diff --git a/Makefile b/Makefile index 9c5c36e645..4093514ab1 100644 --- a/Makefile +++ b/Makefile @@ -108,6 +108,12 @@ cl_import.owl: cl-core.obo uberon.owl imports: pato_import.obo chebi_import.obo pr_import.obo ncbitaxon_import.obo touch $@ +# ---------------------------------------- +# MARKDOWN EXPORT +# ---------------------------------------- +markdown: + owltools ext.owl --merge-imports-closure --ontology-to-markdown md + # ---------------------------------------- # MAIN RELEASE FILES # ---------------------------------------- diff --git a/basic.obo b/basic.obo index 6a23b3842e..eece431b22 100644 --- a/basic.obo +++ b/basic.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: uberon/releases/2013-12-15/basic.owl -date: 15:12:2013 12:33 +data-version: uberon/releases/2014-01-11/basic.owl +date: 11:01:2014 11:07 saved-by: cjm subsetdef: cumbo "CUMBO" subsetdef: cyclostome_subset "cyclostome structures" @@ -4046,10 +4046,10 @@ relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 -name: tibial cartilage +name: tibial cartilage tissue def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] -comment: TODO -synonym: "cartilage of tibia" EXACT [FMA:33923] +comment: This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia +synonym: "cartilage of tibia" RELATED [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue @@ -6120,7 +6120,7 @@ relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0000453 name: decidua basalis -def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MGI:anna] +def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity subset: efo_slim synonym: "basal decidua" RELATED [MGI:anna] @@ -7126,7 +7126,7 @@ relationship: part_of UBERON:0001073 ! ileocecal junction [Term] id: UBERON:0000642 name: suspensory ligament of duodenum -def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] @@ -7650,6 +7650,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string +property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string property_value: has_relational_adjective "stomodeal" xsd:string [Term] @@ -8791,7 +8792,8 @@ xref: Wikipedia:Humerus xref: XAO:0003210 is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone -relationship: develops_from UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +relationship: develops_from UBERON:0006245 ! humerus cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string @@ -8889,7 +8891,8 @@ xref: UMLS:C0040184 {source="ncithesaurus:Tibia"} xref: Wikipedia:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string @@ -8948,7 +8951,8 @@ xref: XAO:0003214 is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +relationship: develops_from UBERON:0010129 ! femur cartilage element relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 ! hindlimb skeleton property_value: external_definition "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string @@ -12015,10 +12019,10 @@ xref: XAO:0003078 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0015010 ! sacral vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column -relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] @@ -16622,7 +16626,8 @@ xref: Wikipedia:Ilium_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +relationship: develops_from UBERON:0010714 ! iliac cartilage element relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: dubious_for_taxon NCBITaxon:8570 @@ -16654,7 +16659,8 @@ xref: Wikipedia:Ischium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: external_definition "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string @@ -16682,7 +16688,8 @@ xref: Wikipedia:Pubis_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: external_definition "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string @@ -20071,7 +20078,8 @@ xref: VSAO:0005012 xref: Wikipedia:Radius_(bone) is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +relationship: develops_from UBERON:0006286 ! radius cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string @@ -20099,7 +20107,8 @@ xref: VSAO:0005013 xref: Wikipedia:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +relationship: develops_from UBERON:0006306 ! ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string property_value: has_relational_adjective "ulnar" xsd:string @@ -20239,6 +20248,9 @@ xref: UMLS:C0223736 {source="ncithesaurus:Trapezial_Bone"} xref: VSAO:0005043 xref: Wikipedia:Trapezium_(bone) is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001431 @@ -20268,6 +20280,9 @@ xref: UMLS:C0223741 {source="ncithesaurus:Trapezoid_Bone"} xref: VSAO:0005044 xref: Wikipedia:Trapezoid_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string @@ -20299,6 +20314,9 @@ xref: UMLS:C0223733 {source="ncithesaurus:Capitate_Bone"} xref: VSAO:0005045 xref: Wikipedia:Capitate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -20330,6 +20348,9 @@ xref: UMLS:C0560737 {source="ncithesaurus:Hamate_Bone"} xref: VSAO:0005046 xref: Wikipedia:Hamate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -20390,9 +20411,10 @@ xref: UMLS:C0007285 {source="ncithesaurus:Carpal_Bone"} xref: Wikipedia:Carpus is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004452 ! carpal region -relationship: develops_from UBERON:0006213 ! carpus cartilage condensation +relationship: develops_from UBERON:0006213 ! carpus cartilage element relationship: part_of UBERON:0004452 ! carpal region relationship: part_of UBERON:0009880 ! carpal skeleton @@ -20427,9 +20449,10 @@ xref: Wikipedia:Phalanges_of_the_hand is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002389 ! manual digit -relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage condensation +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO]" xsd:string @@ -20697,7 +20720,8 @@ xref: UMLS:C0016068 {source="ncithesaurus:Fibula"} xref: Wikipedia:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string property_value: has_relational_adjective "fibular" xsd:string @@ -20729,9 +20753,10 @@ xref: SCTID:108372004 xref: UMLS:C0039316 {source="ncithesaurus:Tarsal_Bone"} is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004454 ! tarsal region -relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation +relationship: develops_from UBERON:0010541 ! tarsus cartilage element relationship: part_of UBERON:0004454 ! tarsal region relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -20757,6 +20782,7 @@ xref: Wikipedia:Metatarsal_bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0000983 ! metatarsus region @@ -20792,9 +20818,10 @@ xref: Wikipedia:Phalanges_of_the_foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002387 ! pes -relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage condensation +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0002387 ! pes relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium @@ -20828,7 +20855,8 @@ xref: UMLS:C0006655 {source="ncithesaurus:Calcaneum"} xref: VSAO:0005016 xref: Wikipedia:Calcaneus is_a: UBERON:0011679 ! proximal tarsal bone -relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element property_value: has_relational_adjective "calcaneal" xsd:string [Term] @@ -20897,6 +20925,9 @@ xref: UMLS:C1512869 {source="ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005052 xref: Wikipedia:Medial_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string [Term] @@ -20933,6 +20964,9 @@ xref: UMLS:C1513292 {source="ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005053 xref: Wikipedia:Intermediate_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string [Term] @@ -20968,6 +21002,9 @@ xref: UMLS:C1517036 {source="ncithesaurus:External_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005054 xref: Wikipedia:Lateral_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string @@ -21662,6 +21699,9 @@ xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001481 @@ -21673,6 +21713,8 @@ xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +relationship: develops_from UBERON:0015069 ! distal carpal cartilage relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string @@ -26391,7 +26433,8 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008193 ! pneumatized bone -relationship: develops_from UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0015060 ! sphenoid endochondral element +relationship: develops_from UBERON:0009193 ! sphenoid cartilage element relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -26713,9 +26756,9 @@ property_value: homology_notes "Additional structural analysis within a phylogen [Term] id: UBERON:0001687 -name: stapes +name: stapes bone def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [doi:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes] -comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] +comment: Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] @@ -26746,16 +26789,18 @@ xref: Wikipedia:Stapes is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0004368 ! Reichert's cartilage -relationship: develops_from UBERON:0010055 ! stapes cartilage condensation +relationship: develops_from UBERON:0010055 ! stapes cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string [Term] id: UBERON:0001688 -name: incus +name: incus bone def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: uberon_slim +synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 @@ -26772,16 +26817,19 @@ xref: VHOG:0000689 xref: Wikipedia:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone -relationship: develops_from UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0015017 ! incus endochondral element +relationship: develops_from UBERON:0007374 ! incus cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string [Term] id: UBERON:0001689 -name: malleus +name: malleus bone def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus] +synonym: "malleus" BROAD [MA:0001216] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 @@ -26796,8 +26844,9 @@ xref: VHOG:0000690 xref: Wikipedia:Malleus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0003107 ! Meckel's cartilage -relationship: develops_from UBERON:0010054 ! malleus cartilage condensation +relationship: develops_from UBERON:0010054 ! malleus cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string @@ -26913,8 +26962,10 @@ xref: VHOG:0001152 xref: Wikipedia:Basilar_part_of_occipital_bone xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region @@ -26954,9 +27005,11 @@ xref: VHOG:0001151 xref: Wikipedia:Lateral_parts_of_occipital_bone xref: ZFA:0000661 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0009635 ! parachordal cartilage -relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -32904,12 +32957,10 @@ property_value: homology_notes "Classical anatomical studies subdivided the vert id: UBERON:0001897 name: dorsal plus ventral thalamus def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] -comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: efo_slim subset: uberon_slim subset: vertebrate_core -synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954] -synonym: "Th" BROAD ABBREVIATION [PMID:23375746] +synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954, PMID:23375746] synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] synonym: "thalami" RELATED PLURAL [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] @@ -33059,11 +33110,12 @@ comment: Some sources treat the subthalamus as distinct from the thalamus, separ subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] -synonym: "prethalamus" EXACT DEVELOPMENTAL [] +synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] synonym: "SbTh" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_708] -synonym: "subthalamic region" EXACT [] -synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamic region" EXACT [FMA:62010, NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [NIF_GrossAnatomy:birnlex_708] +synonym: "ventral thalamus" EXACT [GO:0021539] synonym: "ventral thalamus" EXACT [MA:0000181] xref: BAMS:SbTh xref: BAMS:Ventral_thalamus @@ -33087,7 +33139,6 @@ xref: Wikipedia:Subthalamus xref: ZFA:0000458 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus -property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string property_value: has_relational_adjective "subthalamic" xsd:string [Term] @@ -34667,7 +34718,7 @@ synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] -synonym: "isocortex" EXACT [] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] @@ -41844,7 +41895,7 @@ property_value: homology_notes "There are more than 50,000 extant vertebrate spe [Term] id: UBERON:0002205 name: manubrium of sternum -def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: uberon_slim synonym: "manubrium" BROAD [] @@ -42408,7 +42459,8 @@ xref: ZFA:0000538 is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: develops_from UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +relationship: develops_from UBERON:0006288 ! rib cartilage element relationship: part_of UBERON:0014478 ! rib skeletal system property_value: external_definition "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO]" xsd:string property_value: external_definition "Endochondral, rodlike element that articulates with the transverse process and parapophysis (double-headed rib), or with the transverse process only (single-headed rib); it extends into the body wall and provides a site for muscle attachment.[AAO]" xsd:string @@ -43469,7 +43521,7 @@ def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. subset: uberon_slim subset: vertebrate_core -synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery] +synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] @@ -45404,9 +45456,10 @@ xref: Wikipedia:Thoracic_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column -relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage condensation +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0006073 ! thoracic region of vertebral column @@ -46300,6 +46353,7 @@ xref: Wikipedia:Metacarpal_bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0004453 ! metacarpus region @@ -46766,8 +46820,7 @@ property_value: external_definition "One of the fingers of the manus.[AAO]" xsd: [Term] id: UBERON:0002390 name: hematopoietic system -def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system] -comment: This class was created automatically from a combination of ontologies +def: "Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes." [Wikipedia:Haematopoiesis] subset: efo_slim subset: uberon_slim subset: vertebrate_core @@ -46795,7 +46848,7 @@ xref: SCTID:362587009 xref: TAO:0005023 xref: UMLS:C0018957 {source="ncithesaurus:Hematopoietic_System"} xref: VHOG:0001624 -xref: Wikipedia:Hematopoietic_system +xref: Wikipedia:Haematopoiesis xref: XAO:0000122 xref: ZFA:0005023 is_a: UBERON:0000467 ! anatomical system @@ -47470,7 +47523,8 @@ xref: ZFA:0001189 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: develops_from UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element +relationship: develops_from UBERON:0011094 ! vertebra cartilage element relationship: part_of UBERON:0001130 ! vertebral column property_value: external_definition "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string property_value: external_definition "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string @@ -47500,9 +47554,10 @@ xref: XAO:0003076 is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0004451 ! trunk or cervical vertebra +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column -relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage condensation +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element relationship: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -47528,9 +47583,10 @@ xref: Wikipedia:Lumbar_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column -relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage condensation +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] @@ -47928,9 +47984,10 @@ xref: SCTID:304149004 xref: UMLS:C0582791 {source="ncithesaurus:Bone_of_the_Extremity"} is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002101 ! limb -relationship: develops_from UBERON:0010881 ! limb bone cartilage condensation +relationship: develops_from UBERON:0010881 ! limb cartilage element relationship: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0004381 ! skeleton of limb @@ -49224,6 +49281,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbito-sphénocïde@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [UBERON:cjm] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -49237,7 +49295,8 @@ xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0002517 ! basicranium @@ -49638,7 +49697,7 @@ xref: SCTID:279685009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001687 ! stapes +relationship: part_of UBERON:0001687 ! stapes bone [Term] id: UBERON:0002497 @@ -53803,12 +53862,11 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0002689 name: supraoptic crest def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis] -comment: AO notes: NIF has two classes here +comment: AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] -synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] -synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "OVLT" EXACT ABBREVIATION [] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] @@ -61454,7 +61512,7 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0003054 name: roof plate -def: "a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +def: "a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim subset: vertebrate_core @@ -61464,8 +61522,9 @@ xref: AAO:0011097 xref: NeuroNames:1371 xref: TAO:0007058 xref: ZFA:0007058 -is_a: UBERON:0005423 ! developing anatomical structure -relationship: part_of UBERON:0000922 ! embryo +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0001049 ! neural tube property_value: external_definition "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string @@ -62128,7 +62187,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic [Term] id: UBERON:0003079 name: floor plate -def: "A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: efo_slim subset: uberon_slim @@ -62147,11 +62206,14 @@ xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: Wikipedia:Floor_plate xref: ZFA:0000022 -is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002328 ! notochord relationship: develops_from UBERON:0007286 ! presumptive floor plate -relationship: part_of UBERON:0000922 ! embryo -relationship: part_of UBERON:0001016 ! nervous system +relationship: part_of UBERON:0001049 ! neural tube +property_value: dc-description " A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." xsd:string property_value: external_definition "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string [Term] @@ -64394,9 +64456,10 @@ xref: VSAO:0000199 xref: Wikipedia:Phalanx_bones is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002544 ! digit -relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation +relationship: develops_from UBERON:0010701 ! phalanx cartilage element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0010543 ! acropodial skeleton property_value: has_relational_adjective "phalangeal" xsd:string @@ -64973,6 +65036,7 @@ xref: FMA:7480 xref: galen:RibCage xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png xref: SCTID:361741004 +xref: Wikipedia:Human_rib_cage xref: Wikipedia:Rib_cage is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton @@ -66000,9 +66064,8 @@ xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002950 ! regional part of midbrain -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0003079 ! floor plate @@ -66031,9 +66094,8 @@ xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002791 ! regional part of telencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -66074,9 +66136,8 @@ xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002784 ! regional part of diencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -66104,9 +66165,8 @@ xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -66140,9 +66200,8 @@ xref: EHDAA:7590 xref: EHDAA2:0001097 xref: EMAPA:17551 xref: VHOG:0000786 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002678 ! regional part of medulla oblongata -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate @@ -68731,9 +68790,10 @@ xref: SCTID:361370006 xref: UMLS:C0448188 {source="ncithesaurus:Bone_of_the_Lower_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002103 ! hindlimb -relationship: develops_from UBERON:0010885 ! hindlimb bone cartilage condensation +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002103 ! hindlimb @@ -71991,9 +72051,10 @@ xref: ncithesaurus:Hand_Digit_1_Phalanx xref: SCTID:181975002 xref: UMLS:C1711344 {source="ncithesaurus:Hand_Digit_1_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! manual digit 1 -relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element relationship: part_of UBERON:0001463 ! manual digit 1 [Term] @@ -72371,9 +72432,10 @@ xref: ncithesaurus:Hand_Digit_2_Phalanx xref: SCTID:361783009 xref: UMLS:C1708312 {source="ncithesaurus:Hand_Digit_2_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! manual digit 2 -relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element relationship: part_of UBERON:0003622 ! manual digit 2 [Term] @@ -72415,9 +72477,10 @@ xref: ncithesaurus:Hand_Digit_3_Phalanx xref: SCTID:361785002 xref: UMLS:C1708314 {source="ncithesaurus:Hand_Digit_3_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! manual digit 3 -relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element relationship: part_of UBERON:0003623 ! manual digit 3 [Term] @@ -72459,9 +72522,10 @@ xref: ncithesaurus:Hand_Digit_4_Phalanx xref: SCTID:361787005 xref: UMLS:C1708316 {source="ncithesaurus:Hand_Digit_4_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! manual digit 4 -relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element relationship: part_of UBERON:0003624 ! manual digit 4 [Term] @@ -72506,9 +72570,10 @@ xref: ncithesaurus:Hand_Digit_5_Phalanx xref: SCTID:361789008 xref: UMLS:C1708317 {source="ncithesaurus:Hand_Digit_5_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! manual digit 5 -relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element relationship: part_of UBERON:0003625 ! manual digit 5 [Term] @@ -72540,9 +72605,10 @@ xref: ncithesaurus:Foot_Digit_1_Phalanx xref: SCTID:361798006 xref: UMLS:C1708080 {source="ncithesaurus:Foot_Digit_1_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! pedal digit 1 -relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] @@ -72566,9 +72632,10 @@ xref: ncithesaurus:Foot_Digit_2_Phalanx xref: SCTID:361800004 xref: UMLS:C1708082 {source="ncithesaurus:Foot_Digit_2_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! pedal digit 2 -relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element relationship: part_of UBERON:0003632 ! pedal digit 2 [Term] @@ -72592,9 +72659,10 @@ xref: ncithesaurus:Foot_Digit_3_Phalanx xref: SCTID:361802007 xref: UMLS:C1708084 {source="ncithesaurus:Foot_Digit_3_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! pedal digit 3 -relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element relationship: part_of UBERON:0003633 ! pedal digit 3 [Term] @@ -72654,7 +72722,8 @@ xref: SCTID:181973009 xref: UMLS:C1708987 {source="ncithesaurus:Metacarpal_Bone_Digit_1"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element property_value: external_definition "The first metacarpal bone or the metacarpal bone of the thumb is the first bone of the thumb. It is connected to the trapezium of the carpus at the first carpometacarpal joint and to the proximal thumb phalanx at the first metacarpophalangeal joint[Wikipedia:First_metacarpal_bone]." xsd:string property_value: ray_number "1" xsd:nonNegativeInteger @@ -72693,7 +72762,8 @@ xref: SCTID:263399007 xref: UMLS:C1708988 {source="ncithesaurus:Metacarpal_Bone_Digit_2"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -72734,7 +72804,8 @@ xref: UMLS:C1708989 {source="ncithesaurus:Metacarpal_Bone_Digit_3"} xref: Wikipedia:Third_metacarpal_bone is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO]" xsd:string property_value: external_definition "The third metacarpal bone (metacarpal bone of the middle finger) is a little smaller than the second. The dorsal aspect of its base presents on its radial side a pyramidal eminence, the styloid process, which extends upward behind the capitate; immediately distal to this is a rough surface for the attachment of the extensor carpi radialis brevis muscle. The carpal articular facet is concave behind, flat in front, and articulates with the capitate. On the radial side is a smooth, concave facet for articulation with the second metacarpal, and on the ulnar side two small oval facets for the fourth metacarpal[Wikipedia:Third_metacarpal_bone]." xsd:string property_value: ray_number "3" xsd:nonNegativeInteger @@ -72774,7 +72845,8 @@ xref: SCTID:263401001 xref: UMLS:C1708990 {source="ncithesaurus:Metacarpal_Bone_Digit_4"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element property_value: external_definition "The fourth metacarpal bone (metacarpal bone of the ring finger) is shorter and smaller than the third. The base is small and quadrilateral; its superior surface presents two facets, a large one medially for articulation with the hamate, and a small one laterally for the capitate. On the radial side are two oval facets, for articulation with the third metacarpal; and on the ulnar side a single concave facet, for the fifth metacarpal[Wikipedia:Fourth_metacarpal_bone]." xsd:string property_value: ray_number "4" xsd:nonNegativeInteger @@ -72814,7 +72886,8 @@ xref: SCTID:263402008 xref: UMLS:C1711224 {source="ncithesaurus:Metacarpal_Bone_Digit_5"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO]" xsd:string property_value: external_definition "The fifth metacarpal bone (metacarpal bone of the little finger or pinky finger) is the most lateral metacarpal[Wikipedia:Fifth_metacarpal_bone]." xsd:string property_value: ray_number "5" xsd:nonNegativeInteger @@ -72842,7 +72915,8 @@ xref: SCTID:182121005 xref: UMLS:C1708999 {source="ncithesaurus:Metatarsal_Bone_Digit_1"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO]" xsd:string property_value: external_definition "The first metatarsal bone is the bone in the body of the foot just behind the big toe. It is remarkable for its great thickness, and is the shortest of the metatarsal bones. The body is strong, and of well-marked prismoid form. The base presents, as a rule, no articular facets on its sides, but occasionally on the lateral side there is an oval facet, by which it articulates with the second metatarsal. Its proximal articular surface is of large size and kidney-shaped; its circumference is grooved, for the tarsometatarsal ligaments, and medially gives insertion to part of the tendon of the Tibialis anterior; its plantar angle presents a rough oval prominence for the insertion of the tendon of the Peronæus longus. The head is large; on its plantar surface are two grooved facets, on which glide sesamoid bones; the facets are separated by a smooth elevation[Wikipedia:First_metatarsal_bone]." xsd:string property_value: ray_number "1" xsd:nonNegativeInteger @@ -72868,7 +72942,8 @@ xref: SCTID:182128004 xref: UMLS:C1709000 {source="ncithesaurus:Metatarsal_Bone_Digit_2"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -72895,7 +72970,8 @@ xref: UMLS:C1709001 {source="ncithesaurus:Metatarsal_Bone_Digit_3"} xref: Wikipedia:Third_metatarsal_bone is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO]" xsd:string property_value: external_definition "The third metatarsal bone articulates proximally, by means of a triangular smooth surface, with the third cuneiform; medially, by two facets, with the second metatarsal; and laterally, by a single facet, with the fourth metatarsal. This last facet is situated at the dorsal angle of the base[Wikipedia:Third_metatarsal_bone]." xsd:string property_value: ray_number "3" xsd:nonNegativeInteger @@ -72921,7 +72997,8 @@ xref: SCTID:182139001 xref: UMLS:C1709002 {source="ncithesaurus:Metatarsal_Bone_Digit_4"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO]" xsd:string property_value: external_definition "The fourth metatarsal bone is smaller in size than the third; its base presents an oblique quadrilateral surface for articulation with the cuboid; a smooth facet on the medial side, divided by a ridge into an anterior portion for articulation with the third metatarsal, and a posterior portion for articulation with the third cuneiform; on the lateral side a single facet, for articulation with the fifth metatarsal[Wikipedia:Fourth_metatarsal_bone]." xsd:string property_value: ray_number "4" xsd:nonNegativeInteger @@ -72947,7 +73024,8 @@ xref: SCTID:182144008 xref: UMLS:C1709003 {source="ncithesaurus:Metatarsal_Bone_Digit_5"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO]" xsd:string property_value: external_definition "The fifth metatarsal bone is recognized by a rough eminence, the tuberosity, on the lateral side of its base. The base articulates behind, by a triangular surface cut obliquely in a transverse direction, with the cuboid; and medially, with the fourth metatarsal. On the medial part of its dorsal surface is inserted the tendon of the Peronæus tertius and on the dorsal surface of the tuberosity that of the Peronæus brevis. A strong band of the plantar aponeurosis connects the projecting part of the tuberosity with the lateral process of the tuberosity of the calcaneus. The plantar surface of the base is grooved for the tendon of the Abductor digiti quinti, and gives origin to the Flexor digiti quinti brevis. The base of the metatarsal is often injured and a particularly notorious fracture is the Jones fracture. When the tuberosity is broken, it is called a pseudo-Jones fracture or a dancer's fracture. This is a common fracture of the fifth metatarsal. Stress fractures are common in the fifth metatarsal among athletes[Wikipedia:Fifth_metatarsal_bone]." xsd:string property_value: ray_number "5" xsd:nonNegativeInteger @@ -75395,9 +75473,10 @@ xref: ncithesaurus:Foot_Digit_4_Phalanx xref: SCTID:361804008 xref: UMLS:C1708086 {source="ncithesaurus:Foot_Digit_4_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! pedal digit 4 -relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element relationship: part_of UBERON:0003634 ! pedal digit 4 [Term] @@ -75423,9 +75502,10 @@ xref: ncithesaurus:Foot_Digit_5_Phalanx xref: SCTID:361806005 xref: UMLS:C1708088 {source="ncithesaurus:Foot_Digit_5_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! pedal digit 5 -relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element relationship: part_of UBERON:0003635 ! pedal digit 5 [Term] @@ -76777,7 +76857,6 @@ relationship: part_of UBERON:0001768 ! uvea id: UBERON:0003957 name: Bruch's membrane def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] -comment: TODO - see also subset: vertebrate_core synonym: "basal lamina of choroid" EXACT [FMA:58438] synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] @@ -76929,7 +77008,7 @@ synonym: "gonium" EXACT [MP:0008380] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0003967 @@ -85853,7 +85932,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone [Term] id: UBERON:0004547 name: decidua capsularis -def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] xref: FMA:86478 xref: MA:0002906 xref: ncithesaurus:Decidua_Capsularis @@ -86122,8 +86201,9 @@ name: rib 1 def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa I" EXACT LATIN [] synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib] -synonym: "Costa prima (I)" EXACT [FMA:7597] +synonym: "costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png @@ -86142,8 +86222,9 @@ name: rib 2 def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa II" EXACT LATIN [] synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib] -synonym: "Costa secunda (II)" EXACT [FMA:7620] +synonym: "costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray125.png @@ -86161,6 +86242,7 @@ id: UBERON:0004603 name: rib 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa III" EXACT LATIN [] synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 @@ -86175,6 +86257,7 @@ id: UBERON:0004604 name: rib 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IV" EXACT LATIN [] synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 @@ -86189,6 +86272,7 @@ id: UBERON:0004605 name: rib 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa V" EXACT LATIN [] synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 @@ -86203,6 +86287,7 @@ id: UBERON:0004606 name: rib 6 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VI" EXACT LATIN [] synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 @@ -86217,6 +86302,7 @@ id: UBERON:0004607 name: rib 7 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VII" EXACT LATIN [] synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 @@ -86231,6 +86317,7 @@ id: UBERON:0004608 name: rib 9 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IX" EXACT LATIN [] synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 @@ -86246,6 +86333,7 @@ name: rib 10 def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa X" EXACT LATIN [] synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray126.png @@ -86264,6 +86352,7 @@ name: rib 11 def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XI" EXACT LATIN [] synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Gray127.png @@ -86281,6 +86370,7 @@ name: rib 12 def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XII" EXACT LATIN [] synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png @@ -86712,10 +86802,11 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: SCTID:361515007 xref: VHOG:0000854 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010363 ! endochondral element -relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015020 ! otic capsule endochondral element +relationship: develops_from UBERON:0010351 ! otic capsule cartilage element relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -87831,7 +87922,7 @@ relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004703 name: dorsal thalamus -comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 +comment: TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] @@ -87850,6 +87941,7 @@ xref: TAO:0000653 xref: ZFA:0000653 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +property_value: present_in_taxon NCBITaxon:7776 [Term] id: UBERON:0004704 @@ -88688,7 +88780,7 @@ xref: Wikipedia:Articular xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone -relationship: develops_from UBERON:0011002 ! articular cartilage condensation +relationship: develops_from UBERON:0011002 ! articular cartilage element property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string property_value: external_comment "The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO]" xsd:string @@ -88764,8 +88856,10 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -94017,8 +94111,7 @@ relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005070 name: anterior neuropore -def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] -comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube +def: "The neuropore at the anterior (rostral) end of the neural tube." [UBERON:cjm] synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "rostral neuropore" EXACT [EMAPA:16523] @@ -94034,7 +94127,7 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0005071 name: posterior neuropore -def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] +def: "The neuropore at the posterior (caudal) end of the neural tube." [UBERON:cjm] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA:900 xref: EHDAA2:0000676 @@ -94078,29 +94171,32 @@ is_a: UBERON:0000015 ! anatomical boundary [Term] id: UBERON:0005077 name: neuropore -def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] xref: SCTID:360408007 +is_a: UBERON:0000161 ! orifice is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005078 -name: lamina terminalis of forebrain vesicle -def: "The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development." [Wikipedia:Lamina_terminalis] -synonym: "lamina terminalis" EXACT [FMA:61975] -xref: BAMS:LT +name: lamina terminalis of neural tube +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT +xref: EHDAA:1983 +xref: EHDAA:2661 xref: EHDAA2:0000903 xref: EMAPA:16649 xref: EMAPA:16904 -xref: FMA:61975 xref: NeuroNames:208 -xref: SCTID:361483008 xref: VHOG:0001547 -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: part_of UBERON:0006222 ! future diencephalon property_value: homologous_in NCBITaxon:7742 @@ -97287,7 +97383,7 @@ xref: MA:0002987 xref: SCTID:368926004 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005343 @@ -97484,7 +97580,7 @@ name: malleus processus brevis def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 @@ -97500,7 +97596,7 @@ xref: SCTID:368927008 xref: Wikipedia:Neck_of_malleus is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005356 @@ -98531,8 +98627,10 @@ synonym: "auditory capsule" EXACT [ZFA:0001500] xref: EMAPA:18803 xref: TAO:0001500 xref: ZFA:0001500 -is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004637 ! otic capsule +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010351 ! otic capsule cartilage element +is_a: UBERON:0014387 ! mesenchyme derived from neural crest property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: external_definition "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string @@ -98966,7 +99064,7 @@ relationship: part_of UBERON:0004571 ! systemic arterial system [Term] id: UBERON:0005432 name: aortic sac -def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac] +def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] xref: EHDAA:9826 xref: EHDAA2:0004145 xref: FMA:71008 @@ -98979,6 +99077,7 @@ is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004363 ! aortic arch relationship: part_of UBERON:0004145 ! outflow tract +property_value: external_definition "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string [Term] id: UBERON:0005433 @@ -102140,15 +102239,17 @@ relationship: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0005687 -name: orbitosphenoid cartilage condensation -synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329] +name: orbitosphenoid cartilage element +synonym: "sphenoid lesser wing cartilage element" RELATED [EHDAA2:0001329] xref: EHDAA:9554 xref: EHDAA2:0001329 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element relationship: develops_from UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0005688 @@ -102581,8 +102682,7 @@ xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002240 ! spinal cord intersection_of: part_of UBERON:0003079 ! floor plate @@ -103692,7 +103792,7 @@ is_a: UBERON:0005856 ! developing mesenchymal condensation [Term] id: UBERON:0005866 name: pre-cartilage condensation -def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage] +def: "A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts." [AEO:0000150, AEO:JB] synonym: "pre-chondrogenic condensation" EXACT [] synonym: "precartilage condensation" EXACT [] synonym: "precartilagenous condensation" EXACT [] @@ -103702,6 +103802,7 @@ xref: EHDAA2:0003150 xref: EMAPA:32736 is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: part_of UBERON:0004288 ! skeleton +property_value: external_definition "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." xsd:string [Term] id: UBERON:0005867 @@ -105626,9 +105727,10 @@ xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: SCTID:361774004 xref: UMLS:C0223616 {source="ncithesaurus:Coccygeal_Vertebra"} is_a: UBERON:0001095 ! caudal vertebra +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx -relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage condensation +relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage element relationship: part_of UBERON:0001350 ! coccyx [Term] @@ -107088,13 +107190,16 @@ property_value: homology_notes "Mammals have a third type of tympanic ear. An ex [Term] id: UBERON:0006209 -name: basioccipital cartilage condensation +name: basioccipital cartilage element subset: emapa_ehdaa2 xref: EHDAA:7141 xref: EHDAA2:0000164 xref: EMAPA:18337 xref: VHOG:0001124 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015048 ! basioccipital endochondral element relationship: develops_from UBERON:0009197 ! basioccipital pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 @@ -107110,9 +107215,12 @@ is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0006211 name: buccopharyngeal membrane -def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] +def: "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." [MP:0012521] subset: emapa_ehdaa2 +synonym: "oral membrane" RELATED [MP:0012521] +synonym: "oral plate" RELATED [MP:0012521] synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] +synonym: "pharyngeal membrane" RELATED INCONSISTENT [MP:0012521] xref: EHDAA:536 xref: EHDAA2:0000189 xref: EMAPA:16259 @@ -107147,14 +107255,16 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006213 -name: carpus cartilage condensation +name: carpus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a carpal bone." [OBOL:automatic] xref: EHDAA:8544 xref: EHDAA2:0000221 xref: EMAPA:18102 xref: VHOG:0001123 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0010377 ! mesenchyme from somatopleure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 @@ -107166,8 +107276,11 @@ xref: EHDAA:6324 xref: EHDAA2:0000222 xref: EMAPA:17724 xref: VHOG:0000955 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0009523 ! mesenchyme of handplate +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region relationship: part_of UBERON:0009523 ! mesenchyme of handplate property_value: homologous_in NCBITaxon:7742 @@ -107358,6 +107471,7 @@ xref: EHDAA2:0000457 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -107428,7 +107542,10 @@ subset: emapa_ehdaa2 xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element property_value: homologous_in NCBITaxon:7742 [Term] @@ -107576,14 +107693,16 @@ relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 -name: humerus cartilage condensation +name: humerus cartilage element subset: emapa_ehdaa2 xref: EHDAA:6240 xref: EHDAA2:0000787 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005258 ! upper arm mesenchyme -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015053 ! humerus endochondral element relationship: develops_from UBERON:0006246 ! humerus pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme @@ -107598,7 +107717,9 @@ xref: EHDAA2:0000788 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005258 ! upper arm mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -107611,8 +107732,8 @@ xref: EHDAA:9568 xref: EHDAA2:0000809 xref: EMAPA:18029 xref: VHOG:0000964 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -107627,7 +107748,7 @@ xref: EHDAA2:0000813 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015017 ! incus endochondral element relationship: develops_from UBERON:0010042 ! 1st arch mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -107701,13 +107822,14 @@ property_value: homology_notes " (...) an essentially similar sequence of events [Term] id: UBERON:0006254 -name: ischial cartilage condensation +name: ischial cartilage element subset: emapa_ehdaa2 xref: EHDAA:9570 xref: EHDAA2:0000890 xref: EMAPA:26930 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015056 ! ischial endochondral element relationship: develops_from UBERON:0006255 ! ischial pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -107719,8 +107841,8 @@ xref: EHDAA:7153 xref: EHDAA2:0000891 xref: EMAPA:18348 xref: VHOG:0000962 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -107827,6 +107949,7 @@ xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: homologous_in NCBITaxon:7742 @@ -108204,21 +108327,21 @@ xref: EHDAA2:0001574 xref: EMAPA:18349 xref: EMAPA:26928 xref: VHOG:0000965 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006286 -name: radius cartilage condensation +name: radius cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a radius bone." [OBOL:automatic] xref: EHDAA:7267 xref: EHDAA2:0001585 xref: EMAPA:18054 xref: VHOG:0001318 -is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0010846 ! radius pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -108233,20 +108356,24 @@ xref: EHDAA2:0001587 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element relationship: part_of UBERON:0003327 ! mesenchyme of forearm property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006288 -name: rib cartilage condensation +name: rib cartilage element subset: emapa_ehdaa2 xref: EHDAA:8347 xref: EHDAA2:0001716 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015019 ! rib endochondral element relationship: develops_from UBERON:0006289 ! rib pre-cartilage condensation relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: homologous_in NCBITaxon:7742 @@ -108260,14 +108387,16 @@ xref: EHDAA2:0001717 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006290 -name: scapula cartilage condensation +name: scapula cartilage element subset: emapa_ehdaa2 xref: EHDAA:8368 xref: EHDAA2:0001777 @@ -108275,6 +108404,8 @@ xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0006291 ! scapula pre-cartilage condensation relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -108291,6 +108422,7 @@ xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -108344,6 +108476,7 @@ xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001686 ! auditory ossicle property_value: homologous_in NCBITaxon:7742 @@ -108469,15 +108602,15 @@ property_value: homology_notes "Soon after it forms, the mammalian lens becomes [Term] id: UBERON:0006306 -name: ulna cartilage condensation +name: ulna cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a ulna." [OBOL:automatic] xref: EHDAA:7269 xref: EHDAA2:0002098 xref: EMAPA:18055 xref: VHOG:0001155 -is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0010847 ! ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -112463,7 +112596,8 @@ synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0003466 ! forelimb zeugopod bone -relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] @@ -112588,8 +112722,9 @@ xref: Wikipedia:Greater_wing_of_sphenoid_bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0009637 ! alisphenoid ossification center -relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation +relationship: develops_from UBERON:0010733 ! alisphenoid cartilage element relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0008895 ! splanchnocranium @@ -112610,7 +112745,7 @@ xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0006723 @@ -113508,6 +113643,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png xref: Wikipedia:Exoccipital_condyle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -113556,7 +113692,7 @@ property_value: external_definition "Also known as loose connective tissue. A pl [Term] id: UBERON:0006820 name: body of sternum -def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MGI:anna, Wikipedia:Body_of_sternum] +def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum] @@ -113925,8 +114061,9 @@ xref: Wikipedia:Scapula xref: ZFA:0000583 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: develops_from UBERON:0006290 ! scapula cartilage condensation +relationship: develops_from UBERON:0006290 ! scapula cartilage element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string @@ -118087,10 +118224,11 @@ is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 -name: incus cartilage condensation +name: incus cartilage element xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015017 ! incus endochondral element relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation [Term] @@ -120944,7 +121082,8 @@ name: tibiotarsus def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] xref: Wikipedia:Tibiotarsus is_a: UBERON:0003464 ! hindlimb bone -relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] @@ -120954,7 +121093,8 @@ def: "The tarsometatarsus is a bone that is found in the lower leg of certain te comment: Taxon notes: found in birds[VSAO] xref: Wikipedia:Tarsometatarsus is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element relationship: part_of UBERON:0001445 ! skeleton of pes [Term] @@ -121219,8 +121359,7 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:0008254 name: styliform cartilage def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] @@ -125328,9 +125467,10 @@ xref: SCTID:368532003 xref: UMLS:C0003793 {source="ncithesaurus:Bone_of_the_Upper_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0002428 ! limb bone intersection_of: part_of UBERON:0002102 ! forelimb -relationship: develops_from UBERON:0010883 ! forelimb bone cartilage condensation +relationship: develops_from UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002102 ! forelimb @@ -126735,6 +126875,9 @@ xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -126753,11 +126896,15 @@ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 -name: sphenoid bone cartilage condensation +name: sphenoid cartilage element +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -126771,8 +126918,9 @@ xref: VHOG:0001338 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 ! basisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element property_value: homologous_in NCBITaxon:7742 [Term] @@ -126804,6 +126952,7 @@ xref: EHDAA2:0000165 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -126917,11 +127066,12 @@ relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: pharyngeal membrane -def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: ncithesaurus:Pharyngeal_Membrane xref: UMLS:C1519040 {source="ncithesaurus:Pharyngeal_Membrane"} is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009213 @@ -128413,7 +128563,7 @@ is_a: UBERON:0010355 ! ossification center [Term] id: UBERON:0009638 name: orbitosphenoid ossification center -comment: merge with sphenoid lesser wing cartilage condensation? +comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -129552,6 +129702,7 @@ id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain @@ -129565,6 +129716,7 @@ synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 @@ -129644,9 +129796,14 @@ relationship: part_of UBERON:0004902 ! urogenital sinus epithelium id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "ZLI" EXACT [GO:0022006] +comment: Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 +synonym: "MDO" RELATED ABBREVIATION [https://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica +xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line property_value: external_definition "The border between the dorsal and ventral thalamus.[TAO]" xsd:string @@ -131546,21 +131703,22 @@ is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 -name: malleus cartilage condensation +name: malleus cartilage element xref: EMAPA:18229 is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation [Term] id: UBERON:0010055 -name: stapes cartilage condensation +name: stapes cartilage element comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. xref: EMAPA:18230 -is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011607 ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle @@ -131779,7 +131937,7 @@ is_a: UBERON:0000483 ! epithelium id: UBERON:0010078 name: optic choroid vascular plexus alt_id: ZFA:0005228 -comment: Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex +comment: Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] @@ -131794,7 +131952,7 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0002200 ! vasculature of head -property_value: external_definition "A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]." xsd:string +property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]." xsd:string property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string @@ -131925,12 +132083,14 @@ relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0010129 -name: femur cartilage condensation +name: femur cartilage element comment: TODO - request EHDAA2 synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: part_of UBERON:0005254 ! upper leg mesenchyme @@ -134157,23 +134317,20 @@ id: UBERON:0010349 name: otic capsule pre-cartilage condensation synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0010351 -name: otic capsule cartilage condensation +name: otic capsule cartilage element xref: EHDAA:4704 xref: EHDAA2:0001333 xref: EMAPA:17596 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element relationship: develops_from UBERON:0010349 ! otic capsule pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region @@ -135504,7 +135661,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsal b xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0003328 ! mesenchyme of footplate @@ -135512,12 +135671,13 @@ relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0010541 -name: tarsus cartilage condensation +name: tarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010540 ! tarsus pre-cartilage condensation relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0003328 ! mesenchyme of footplate @@ -135568,7 +135728,8 @@ xref: VSAO:0005026 xref: Wikipedia:Metacarpus xref: XAO:0003208 is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium property_value: external_definition "Segment of the forearm corresponding to the metacarpus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string @@ -135597,7 +135758,8 @@ xref: VSAO:0005027 xref: Wikipedia:Metatarsus xref: XAO:0003212 is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium property_value: external_definition "Segment of the leg corresponding to the metatarsus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string @@ -135632,6 +135794,7 @@ xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -135647,6 +135810,7 @@ xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -135662,6 +135826,7 @@ xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -135677,6 +135842,7 @@ xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -135692,81 +135858,87 @@ xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010557 -name: pedal digit 1 metatarsal cartilage condensation +name: pedal digit 1 metatarsal cartilage element def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010558 -name: pedal digit 2 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 2 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 2 metatarsal cartilage condensation" EXACT [] +synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010559 -name: pedal digit 3 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 3 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 3 metatarsal cartilage condensation" EXACT [] +synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010560 -name: pedal digit 4 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 4 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 4 metatarsal cartilage condensation" EXACT [] +synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010561 -name: pedal digit 5 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "hind limb digit 5 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 5 metatarsal cartilage condensation" EXACT [] +name: pedal digit 5 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -135809,6 +135981,7 @@ xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -135825,6 +135998,7 @@ xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -135841,6 +136015,7 @@ xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -135857,6 +136032,7 @@ xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -135873,91 +136049,97 @@ xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010570 -name: manual digit 1 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] -synonym: "finger 1 metacarpus cartilage condensation" EXACT [EHDAA2:0000514] -synonym: "fore limb digit 1 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 1 cartilage condensation" EXACT [] +name: manual digit 1 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010571 -name: manual digit 2 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] -synonym: "finger 2 metacarpus cartilage condensation" EXACT [EHDAA2:0000520] -synonym: "fore limb digit 2 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 2 cartilage condensation" EXACT [] +name: manual digit 2 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010572 -name: manual digit 3 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] -synonym: "finger 3 metacarpus cartilage condensation" EXACT [EHDAA2:0000526] -synonym: "fore limb digit 3 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 3 cartilage condensation" EXACT [] +name: manual digit 3 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010573 -name: manual digit 4 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +name: manual digit 4 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] -synonym: "fore limb digit 4 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 4 cartilage condensation" EXACT [] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010574 -name: manual digit 5 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +name: manual digit 5 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] -synonym: "fore limb digit 5 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 5 cartilage condensation" EXACT [] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -135972,6 +136154,7 @@ xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010564 ! manual digit 1 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -135986,6 +136169,7 @@ xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0005692 ! manual digit 2 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -136000,6 +136184,7 @@ xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0005693 ! manual digit 3 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -136014,6 +136199,7 @@ xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0005694 ! manual digit 4 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -136028,6 +136214,7 @@ xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0005695 ! manual digit 5 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -136042,6 +136229,7 @@ xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -136056,6 +136244,7 @@ xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -136070,6 +136259,7 @@ xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -136084,6 +136274,7 @@ xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -136098,6 +136289,7 @@ xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -136115,6 +136307,8 @@ xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0005255 ! pedal digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: part_of UBERON:0005255 ! pedal digit mesenchyme @@ -136133,6 +136327,8 @@ xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0005257 ! manual digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -136140,13 +136336,14 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010675 -name: manual digit 1 phalanx cartilage condensation +name: manual digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18066 is_a: UBERON:0010564 ! manual digit 1 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation @@ -136154,13 +136351,14 @@ relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010676 -name: manual digit 2 phalanx cartilage condensation +name: manual digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18071 is_a: UBERON:0005692 ! manual digit 2 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation @@ -136168,13 +136366,14 @@ relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010677 -name: manual digit 3 phalanx cartilage condensation +name: manual digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18076 is_a: UBERON:0005693 ! manual digit 3 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation @@ -136182,13 +136381,14 @@ relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010678 -name: manual digit 4 phalanx cartilage condensation +name: manual digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18081 is_a: UBERON:0005694 ! manual digit 4 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation @@ -136196,13 +136396,14 @@ relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010679 -name: manual digit 5 phalanx cartilage condensation +name: manual digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18086 is_a: UBERON:0005695 ! manual digit 5 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation @@ -136210,13 +136411,14 @@ relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010680 -name: pedal digit 1 phalanx cartilage condensation +name: pedal digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18107 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation @@ -136224,13 +136426,14 @@ relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010681 -name: pedal digit 2 phalanx cartilage condensation +name: pedal digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18112 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation @@ -136238,13 +136441,14 @@ relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010682 -name: pedal digit 3 phalanx cartilage condensation +name: pedal digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18117 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation @@ -136252,13 +136456,14 @@ relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010683 -name: pedal digit 4 phalanx cartilage condensation +name: pedal digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18122 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation @@ -136266,13 +136471,14 @@ relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010684 -name: pedal digit 5 phalanx cartilage condensation +name: pedal digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18127 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation @@ -136280,13 +136486,14 @@ relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010685 -name: pedal digit phalanx cartilage condensation +name: pedal digit phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] -synonym: "foot digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0005255 ! pedal digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation @@ -136294,13 +136501,14 @@ relationship: part_of UBERON:0005255 ! pedal digit mesenchyme [Term] id: UBERON:0010686 -name: manual digit phalanx cartilage condensation +name: manual digit phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0005257 ! manual digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation @@ -136316,6 +136524,7 @@ synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: VHOG:0000948 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:0005255 ! pedal digit mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -136404,13 +136613,16 @@ relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium [Term] id: UBERON:0010697 -name: pedal digit metatarsal cartilage condensation +name: pedal digit metatarsal cartilage element comment: Editor note: EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32951 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation [Term] @@ -136424,19 +136636,23 @@ synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:0005257 ! manual digit mesenchyme property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010699 -name: manual digit metacarpus cartilage condensation -synonym: "finger metacarpus cartilage condensation" EXACT [] -synonym: "fore limb digit metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpal cartilage condensation" EXACT [] -synonym: "metacarpus cartilage condensation" EXACT [] +name: manual digit metacarpus cartilage element +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -136445,9 +136661,9 @@ id: UBERON:0010700 name: phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32720 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: part_of UBERON:0006717 ! autopodial skeleton @@ -136455,12 +136671,12 @@ relationship: part_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0010701 -name: phalanx cartilage condensation +name: phalanx cartilage element def: "A cartilaginous condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32721 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation @@ -136632,22 +136848,24 @@ property_value: external_definition "Skeletal system that consists of the paired [Term] id: UBERON:0010714 -name: iliac cartilage condensation +name: iliac cartilage element xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element relationship: develops_from UBERON:0006247 ! iliac pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010718 -name: pubic cartilage condensation +name: pubic cartilage element xref: EHDAA2:0001573 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element relationship: develops_from UBERON:0006285 ! pubic pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -136699,6 +136917,8 @@ xref: SCTID:182102002 xref: UMLS:C1511560 {source="ncithesaurus:Cuneiform_Bone_of_the_Foot"} xref: Wikipedia:Cuneiform_%28anatomy%29 is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string @@ -136767,8 +136987,10 @@ relationship: part_of UBERON:0003685 ! cranial suture id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation xref: EHDAA2:0003449 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -136780,21 +137002,27 @@ xref: EHDAA2:0003448 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010733 -name: alisphenoid cartilage condensation +name: alisphenoid cartilage element synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0010732 ! alisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0010737 @@ -136807,6 +137035,9 @@ synonym: "tarsal 4" EXACT [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -136820,6 +137051,9 @@ synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -136836,6 +137070,9 @@ synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string [Term] @@ -136903,18 +137140,19 @@ synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:00017 xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0010745 -name: sacral vertebra cartilage condensation +name: sacral vertebra cartilage element synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0005179 ! pelvic region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0010744 ! sacral vertebra pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column @@ -137015,9 +137253,12 @@ relationship: part_of UBERON:0004339 ! vault of skull [Term] id: UBERON:0010752 -name: exoccipital cartilage condensation +name: exoccipital cartilage element xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -137087,6 +137328,7 @@ id: UBERON:0010757 name: rib 8 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VIII" EXACT LATIN [] synonym: "eighth rib" EXACT [FMA:8120] xref: FMA:8120 xref: MA:0001408 @@ -137138,25 +137380,29 @@ id: UBERON:0010801 name: calcaneum pre-cartilage condensation synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010842 -name: calcaneum cartilage condensation -synonym: "calcaneous cartilage condensation" EXACT [] +name: calcaneum cartilage element +synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010843 -name: clavicle cartilage condensation +name: clavicle cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a clavicle." [OBOL:automatic] comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] xref: EMAPA:18342 @@ -137180,7 +137426,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a radius b comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -137192,31 +137440,34 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a ulna." [ xref: EHDAA:6226 xref: EHDAA2:0002100 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010848 -name: radius-ulna cartilage condensation +name: radius-ulna cartilage element comment: AO notes: note that this is not represented as a single unit in EHDAA2 synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010849 -name: tibia cartilage condensation +name: tibia cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EMAPA:18155 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton @@ -137227,19 +137478,21 @@ name: tibia pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0010851 -name: fibula cartilage condensation +name: fibula cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] xref: EMAPA:18154 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -137253,7 +137506,9 @@ synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA:6196 xref: EHDAA2:0000509 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -137417,9 +137672,11 @@ property_value: present_in_taxon NCBITaxon:9590 [Term] id: UBERON:0010881 -name: limb bone cartilage condensation +name: limb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation relationship: part_of UBERON:0002091 ! appendicular skeleton @@ -137428,19 +137685,23 @@ id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0010883 -name: forelimb bone cartilage condensation +name: forelimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a forelimb bone." [OBOL:automatic] subset: grouping_class -synonym: "wing bone cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] -is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002102 ! forelimb relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010884 @@ -137449,28 +137710,36 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a forelimb subset: grouping_class synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010885 -name: hindlimb bone cartilage condensation +name: hindlimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] -is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010886 name: hindlimb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010887 @@ -137636,9 +137905,11 @@ is_a: UBERON:0007197 ! hermaphroditic organism [Term] id: UBERON:0010900 -name: tarsometatarsus cartilage condensation +name: tarsometatarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation relationship: part_of UBERON:0001445 ! skeleton of pes @@ -137646,14 +137917,17 @@ relationship: part_of UBERON:0001445 ! skeleton of pes id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010902 -name: tibiotarsus cartilage condensation +name: tibiotarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -137661,7 +137935,9 @@ relationship: part_of UBERON:0001441 ! hindlimb skeleton id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] @@ -138417,7 +138693,7 @@ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0011002 -name: articular cartilage condensation +name: articular cartilage element synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 @@ -138827,7 +139103,7 @@ is_a: UBERON:0001271 ! pelvic girdle region [Term] id: UBERON:0011094 -name: vertebra cartilage condensation +name: vertebra cartilage element def: "A cartilaginous condensation that is part of a vertebral column." [OBOL:automatic] comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] @@ -138835,6 +139111,7 @@ xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010913 ! vertebral element +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation @@ -138848,8 +139125,8 @@ def: "A pre-cartilage condensation that is part of a vertebral column." [OBOL:au synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0003089 ! sclerotome @@ -139502,14 +139779,15 @@ is_a: UBERON:0001725 ! cranial synchondrosis [Term] id: UBERON:0011162 -name: supraoccipital cartilage condensation +name: supraoccipital cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -139520,8 +139798,8 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a supraocc synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA:9534 xref: EHDAA2:0001963 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0009617 ! head paraxial mesoderm relationship: part_of UBERON:0002241 ! chondrocranium @@ -140475,10 +140753,8 @@ id: UBERON:0011250 name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone -intersection_of: UBERON:0001474 ! bone element -intersection_of: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0006717 ! autopodial skeleton +is_a: UBERON:0015063 ! autopod endochondral element +relationship: develops_from UBERON:0015064 ! autopod cartilage property_value: implements_design_pattern http://purl.obolibrary.org/obo/uberon/references/reference_0000015 xsd:anyURI [Term] @@ -142239,7 +142515,7 @@ is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme -relationship: part_of UBERON:0001688 ! incus +relationship: part_of UBERON:0001688 ! incus bone [Term] id: UBERON:0011601 @@ -142351,12 +142627,13 @@ id: UBERON:0011608 name: hyomandibular element def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010522 ! replacement element +is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string @@ -143049,6 +143326,8 @@ name: proximal tarsal bone def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:automatic] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0014395 ! proximal mesopodial bone +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0011683 @@ -143809,6 +144088,8 @@ relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0011820 name: atrioventricular region +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [GO:0003294] xref: EHDAA2:0004149 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -145575,11 +145856,13 @@ is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012080 -name: patella cartilage condensation +name: patella cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a patella." [OBOL:automatic] comment: Note some sources have this as intramembranous xref: EMAPA:19140 -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: develops_from UBERON:0012081 ! patella pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -145590,6 +145873,7 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a patella. xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0006256 ! knee joint primordium @@ -145967,8 +146251,8 @@ synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED PLURAL [] synonym: "os centrale" EXACT [FMA:77232] xref: FMA:77232 -is_a: UBERON:0003656 ! mesopodium bone -relationship: part_of UBERON:0009878 ! mesopodial skeleton +is_a: UBERON:0015067 ! centrale endochondral element +relationship: develops_from UBERON:0015077 ! centrale cartilage [Term] id: UBERON:0012132 @@ -148152,6 +148436,7 @@ id: UBERON:0012429 name: hemopoietic tissue def: "Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue" [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] comment: Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] @@ -151196,25 +151481,26 @@ relationship: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 -name: caudal vertebra cartilage condensation +name: caudal vertebra cartilage element is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation +is_a: UBERON:0005174 ! dorsal region organ is_a: UBERON:0011095 ! vertebra pre-cartilage condensation relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013505 -name: cervical vertebra cartilage condensation +name: cervical vertebra cartilage element synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -151222,31 +151508,33 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0013507 -name: thoracic vertebra cartilage condensation +name: thoracic vertebra cartilage element synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013509 -name: lumbar vertebra cartilage condensation +name: lumbar vertebra cartilage element synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 -is_a: UBERON:0005173 ! abdominal segment organ -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation relationship: part_of UBERON:0006074 ! lumbar region of vertebral column @@ -151254,6 +151542,7 @@ relationship: part_of UBERON:0006074 ! lumbar region of vertebral column id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] @@ -151309,16 +151598,18 @@ is_a: UBERON:0013515 ! subdivision of uterine tube [Term] id: UBERON:0013517 -name: coccygeal vertebra cartilage condensation +name: coccygeal vertebra cartilage element synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] xref: EHDAA2:0000260 -is_a: UBERON:0013503 ! caudal vertebra cartilage condensation +is_a: UBERON:0013503 ! caudal vertebra cartilage element +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element relationship: develops_from UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation [Term] id: UBERON:0013518 name: coccygeal vertebra pre-cartilage condensation is_a: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element [Term] id: UBERON:0013519 @@ -152692,14 +152983,14 @@ property_value: external_definition "Anatomical region comprising the peripheral [Term] id: UBERON:0013683 name: left dorsal thalamus -synonym: "left thalamus" EXACT [FMA:258716] +synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus [Term] id: UBERON:0013684 name: right dorsal thalamus -synonym: "right thalamus" EXACT [FMA:258714] +synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus @@ -154077,7 +154368,7 @@ xref: FMA:52770 xref: SCTID:368921009 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0014398 @@ -157028,6 +157319,7 @@ property_value: present_in_taxon NCBITaxon:8782 id: UBERON:0014734 name: allocortex def: "The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -157059,9 +157351,11 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014736 name: periallocortex -synonym: "periallocortex" RELATED [NeuroNames:2315] +def: "agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] xref: NeuroNames:2315 -is_a: UBERON:0014734 ! allocortex +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 @@ -158439,6 +158733,1180 @@ name: layer of developing cerebral cortex is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 ! cerebral cortex +[Term] +id: UBERON:0014951 +name: proisocortex +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: NeuroNames:2311 +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +def: "A radius bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius element" EXACT [UBERON:endochondral] +synonym: "radius skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius-ulna element" EXACT [UBERON:endochondral] +synonym: "radius-ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +def: "A ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ulna element" EXACT [UBERON:endochondral] +synonym: "ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +def: "A tibia bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibia element" EXACT [UBERON:endochondral] +synonym: "tibia skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015005 +name: vertebra endochondral element +def: "A vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "vertebra element" EXACT [UBERON:endochondral] +synonym: "vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002412 ! vertebra +union_of: UBERON:0011094 ! vertebra cartilage element +union_of: UBERON:0011095 ! vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015006 +name: coccygeal vertebra endochondral element +def: "A coccygeal vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "coccygeal vertebra element" EXACT [UBERON:endochondral] +synonym: "coccygeal vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006070 ! coccygeal vertebra +union_of: UBERON:0013517 ! coccygeal vertebra cartilage element +union_of: UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +def: "A cervical vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "cervical vertebra element" EXACT [UBERON:endochondral] +synonym: "cervical vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation +relationship: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +def: "A thoracic vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "thoracic vertebra element" EXACT [UBERON:endochondral] +synonym: "thoracic vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "lumbar vertebra element" EXACT [UBERON:endochondral] +synonym: "lumbar vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005173 ! abdominal segment organ +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +def: "A sacral vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sacral vertebra element" EXACT [UBERON:endochondral] +synonym: "sacral vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibiotarsus element" EXACT [UBERON:endochondral] +synonym: "tibiotarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsometatarsus element" EXACT [UBERON:endochondral] +synonym: "tarsometatarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation +relationship: part_of UBERON:0001445 ! skeleton of pes + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +def: "A fibula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "fibula element" EXACT [UBERON:endochondral] +synonym: "fibula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "calcaneum element" EXACT [UBERON:endochondral] +synonym: "calcaneum skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "supraoccipital element" EXACT [UBERON:endochondral] +synonym: "supraoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +def: "A stapes bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "stapes element" EXACT [UBERON:endochondral] +synonym: "stapes skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015017 +name: incus endochondral element +def: "A incus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "incus element" EXACT [UBERON:endochondral] +synonym: "incus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +def: "A malleus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "malleus" RELATED [UBERON:endochondral] +synonym: "malleus element" EXACT [UBERON:endochondral] +synonym: "malleus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015019 +name: rib endochondral element +def: "A rib bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "rib element" EXACT [UBERON:endochondral] +synonym: "rib skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation +relationship: part_of UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0015020 +name: otic capsule endochondral element +def: "A otic capsule bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "otic capsule element" EXACT [UBERON:endochondral] +synonym: "otic capsule skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004637 ! otic capsule +union_of: UBERON:0010349 ! otic capsule pre-cartilage condensation +union_of: UBERON:0010351 ! otic capsule cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "forelimb skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "hindlimb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "phalanx element" EXACT [UBERON:endochondral] +synonym: "phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element +relationship: part_of UBERON:0010543 ! acropodial skeleton + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element +relationship: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element +relationship: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element +relationship: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element +relationship: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +relationship: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +relationship: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +relationship: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +relationship: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "basioccipital element" EXACT [UBERON:endochondral] +synonym: "basioccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +def: "A carpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "carpus element" EXACT [UBERON:endochondral] +synonym: "carpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation +relationship: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsus element" EXACT [UBERON:endochondral] +synonym: "tarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element +relationship: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "exoccipital element" EXACT [UBERON:endochondral] +synonym: "exoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015052 +name: femur endochondral element +def: "A femur bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "femur element" EXACT [UBERON:endochondral] +synonym: "femur skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +def: "A humerus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "humerus element" EXACT [UBERON:endochondral] +synonym: "humerus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +def: "A iliac bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "iliac element" EXACT [UBERON:endochondral] +synonym: "iliac skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +def: "A pubic bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pubic element" EXACT [UBERON:endochondral] +synonym: "pubic skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +def: "A ischial bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ischial element" EXACT [UBERON:endochondral] +synonym: "ischial skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +def: "A scapula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "scapula element" EXACT [UBERON:endochondral] +synonym: "scapula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "alisphenoid element" EXACT [UBERON:endochondral] +synonym: "alisphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "orbitosphenoid element" EXACT [UBERON:endochondral] +synonym: "orbitosphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sphenoid bone skeletal element" BROAD [UBERON:endochondral] +synonym: "sphenoid element" EXACT [UBERON:endochondral] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0015061 +name: limb endochondral element +def: "A limb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "limb bone endochondral element" EXACT [UBERON:endochondral] +synonym: "limb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation +relationship: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0004381 ! skeleton of limb + +[Term] +id: UBERON:0015062 +name: bone condensation +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0006717 ! autopodial skeleton +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015064 +name: autopod cartilage +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +comment: Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015068 ! distal carpal endochondral element + +[Term] +id: UBERON:0015077 +name: centrale cartilage +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015081 +name: proximal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015099 +name: distal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +def: "The remnant of the lamina terminalis in the developed brain." [UBERON:cjm] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: SCTID:361483008 +xref: VHOG:0001547 +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0014532 ! lamina of cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter + [Term] id: UBERON:1000000 name: chin ventral margin @@ -158734,7 +160202,7 @@ namespace: none def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -160417,6 +161885,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -160477,6 +161946,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -170687,6 +172157,7 @@ comment: The supraoccipital crest may be small and restricted to the dorsal part synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -173656,6 +175127,7 @@ name: spina occipitalis namespace: uberon/phenoscape-anatomy def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -183110,8 +184582,7 @@ id: UBERON:3000921 name: element Y of hind mesopodium namespace: uberon/phenoscape-anatomy def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -183740,8 +185211,8 @@ id: UBERON:3010045 name: centrale 1 namespace: uberon/phenoscape-anatomy def: "Distal-most centrale when two are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -183777,8 +185248,8 @@ id: UBERON:3010060 name: centrale (fore) namespace: uberon/phenoscape-anatomy def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] -is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -183864,8 +185335,8 @@ id: UBERON:3010073 name: centrale 2 namespace: uberon/phenoscape-anatomy def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -184636,8 +186107,9 @@ name: postminimus namespace: uberon/phenoscape-anatomy def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -189833,8 +191305,7 @@ id: UBERON:4200140 name: prepollical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] @@ -189842,8 +191313,7 @@ id: UBERON:4200141 name: prehallical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:3000922 ! prehallux skeleton created_by: DB @@ -190488,6 +191958,24 @@ is_a: UBERON:0006984 ! anatomical surface relationship: part_of UBERON:0004765 ! skeletal element created_by: WD +[Term] +id: UBERON:4300081 +name: mesopterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300082 +name: metapterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300083 +name: propterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + [Term] id: UBERON:4400000 name: metapterygium diff --git a/bridge/cl-bridge-to-aao.obo b/bridge/cl-bridge-to-aao.obo index c5b5c35031..fda74032a0 100644 --- a/bridge/cl-bridge-to-aao.obo +++ b/bridge/cl-bridge-to-aao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-aao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to aao" xsd:string property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/bridge/cl-bridge-to-aao.owl b/bridge/cl-bridge-to-aao.owl index dfad3388d3..b09d39a92f 100644 --- a/bridge/cl-bridge-to-aao.owl +++ b/bridge/cl-bridge-to-aao.owl @@ -21,7 +21,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-bila.obo b/bridge/cl-bridge-to-bila.obo index 38d1288891..556f66c7d3 100644 --- a/bridge/cl-bridge-to-bila.obo +++ b/bridge/cl-bridge-to-bila.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-bila -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/cl-bridge-to-bila.owl b/bridge/cl-bridge-to-bila.owl index 8eb129519b..d74f4c013f 100644 --- a/bridge/cl-bridge-to-bila.owl +++ b/bridge/cl-bridge-to-bila.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-bspo.obo b/bridge/cl-bridge-to-bspo.obo index 43706e8e6b..d9704f506c 100644 --- a/bridge/cl-bridge-to-bspo.obo +++ b/bridge/cl-bridge-to-bspo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-bspo -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/cl-bridge-to-bspo.owl b/bridge/cl-bridge-to-bspo.owl index f3367bdee7..91fb6c8d67 100644 --- a/bridge/cl-bridge-to-bspo.owl +++ b/bridge/cl-bridge-to-bspo.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-caro.obo b/bridge/cl-bridge-to-caro.obo index 2208cff1c4..32a81d4d1b 100644 --- a/bridge/cl-bridge-to-caro.obo +++ b/bridge/cl-bridge-to-caro.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-caro -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-caro.owl b/bridge/cl-bridge-to-caro.owl index f240c8e9c4..67531b3260 100644 --- a/bridge/cl-bridge-to-caro.owl +++ b/bridge/cl-bridge-to-caro.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-ehdaa.obo b/bridge/cl-bridge-to-ehdaa.obo index 47932bde72..bb7a7e381c 100644 --- a/bridge/cl-bridge-to-ehdaa.obo +++ b/bridge/cl-bridge-to-ehdaa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ehdaa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/cl-bridge-to-ehdaa.owl b/bridge/cl-bridge-to-ehdaa.owl index 1b8225cd44..8d7391d149 100644 --- a/bridge/cl-bridge-to-ehdaa.owl +++ b/bridge/cl-bridge-to-ehdaa.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-ehdaa2.obo b/bridge/cl-bridge-to-ehdaa2.obo index ca961f2266..5aa6c7b60f 100644 --- a/bridge/cl-bridge-to-ehdaa2.obo +++ b/bridge/cl-bridge-to-ehdaa2.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ehdaa2 -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to ehdaa2" xsd:string property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string diff --git a/bridge/cl-bridge-to-ehdaa2.owl b/bridge/cl-bridge-to-ehdaa2.owl index 17d9b03e8c..be6261eb79 100644 --- a/bridge/cl-bridge-to-ehdaa2.owl +++ b/bridge/cl-bridge-to-ehdaa2.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-emapa.obo b/bridge/cl-bridge-to-emapa.obo index 5cfd09f839..220b7716b2 100644 --- a/bridge/cl-bridge-to-emapa.obo +++ b/bridge/cl-bridge-to-emapa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-emapa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to emapa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string diff --git a/bridge/cl-bridge-to-emapa.owl b/bridge/cl-bridge-to-emapa.owl index 09f1e43f7b..52fe0fd9a0 100644 --- a/bridge/cl-bridge-to-emapa.owl +++ b/bridge/cl-bridge-to-emapa.owl @@ -21,7 +21,7 @@ vHOG editors - + diff --git a/bridge/cl-bridge-to-fbbt.obo b/bridge/cl-bridge-to-fbbt.obo index 0b81de73c7..bba9bb2954 100644 --- a/bridge/cl-bridge-to-fbbt.obo +++ b/bridge/cl-bridge-to-fbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-fbbt -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to fbbt" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string diff --git a/bridge/cl-bridge-to-fbbt.owl b/bridge/cl-bridge-to-fbbt.owl index 502b64dfdb..48d0bab8ab 100644 --- a/bridge/cl-bridge-to-fbbt.owl +++ b/bridge/cl-bridge-to-fbbt.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-fma.obo b/bridge/cl-bridge-to-fma.obo index 4381dcf749..bbe232ba8c 100644 --- a/bridge/cl-bridge-to-fma.obo +++ b/bridge/cl-bridge-to-fma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-fma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to fma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the FMA and CL" xsd:string diff --git a/bridge/cl-bridge-to-fma.owl b/bridge/cl-bridge-to-fma.owl index fd8bcf39c5..fb57c15296 100644 --- a/bridge/cl-bridge-to-fma.owl +++ b/bridge/cl-bridge-to-fma.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-go.obo b/bridge/cl-bridge-to-go.obo index 55e1c1334f..71a4742729 100644 --- a/bridge/cl-bridge-to-go.obo +++ b/bridge/cl-bridge-to-go.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-go -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-go.owl b/bridge/cl-bridge-to-go.owl index 09f239dbb0..992eddf350 100644 --- a/bridge/cl-bridge-to-go.owl +++ b/bridge/cl-bridge-to-go.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-hao.obo b/bridge/cl-bridge-to-hao.obo index 34380d3681..85e62cd9d4 100644 --- a/bridge/cl-bridge-to-hao.obo +++ b/bridge/cl-bridge-to-hao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-hao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-hao.owl b/bridge/cl-bridge-to-hao.owl index 44a69255a7..8b8d84b5ef 100644 --- a/bridge/cl-bridge-to-hao.owl +++ b/bridge/cl-bridge-to-hao.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-ma.obo b/bridge/cl-bridge-to-ma.obo index 6fa502bae8..618aaf9ff8 100644 --- a/bridge/cl-bridge-to-ma.obo +++ b/bridge/cl-bridge-to-ma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to ma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and CL" xsd:string diff --git a/bridge/cl-bridge-to-ma.owl b/bridge/cl-bridge-to-ma.owl index 5134061576..910ca73e4d 100644 --- a/bridge/cl-bridge-to-ma.owl +++ b/bridge/cl-bridge-to-ma.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-mfo.obo b/bridge/cl-bridge-to-mfo.obo index 026ae1039e..4abc9548cb 100644 --- a/bridge/cl-bridge-to-mfo.obo +++ b/bridge/cl-bridge-to-mfo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-mfo -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-mfo.owl b/bridge/cl-bridge-to-mfo.owl index bc9a4f8d1d..8a0c37fd0e 100644 --- a/bridge/cl-bridge-to-mfo.owl +++ b/bridge/cl-bridge-to-mfo.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-ncithesaurus.obo b/bridge/cl-bridge-to-ncithesaurus.obo index df7a0d4c39..530e37be89 100644 --- a/bridge/cl-bridge-to-ncithesaurus.obo +++ b/bridge/cl-bridge-to-ncithesaurus.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-ncithesaurus -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-ncithesaurus.owl b/bridge/cl-bridge-to-ncithesaurus.owl index 84c8ecddb4..b300f974e7 100644 --- a/bridge/cl-bridge-to-ncithesaurus.owl +++ b/bridge/cl-bridge-to-ncithesaurus.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-nif_grossanatomy.obo b/bridge/cl-bridge-to-nif_grossanatomy.obo index f183fba16f..610e7bd4b0 100644 --- a/bridge/cl-bridge-to-nif_grossanatomy.obo +++ b/bridge/cl-bridge-to-nif_grossanatomy.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-nif_grossanatomy -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/cl-bridge-to-nif_grossanatomy.owl b/bridge/cl-bridge-to-nif_grossanatomy.owl index ebaa0af499..c78cff11c4 100644 --- a/bridge/cl-bridge-to-nif_grossanatomy.owl +++ b/bridge/cl-bridge-to-nif_grossanatomy.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-og.obo b/bridge/cl-bridge-to-og.obo index b1685116ef..c9c120c19f 100644 --- a/bridge/cl-bridge-to-og.obo +++ b/bridge/cl-bridge-to-og.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-og -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/cl-bridge-to-og.owl b/bridge/cl-bridge-to-og.owl index 9d4aee76e9..834c4bfcb5 100644 --- a/bridge/cl-bridge-to-og.owl +++ b/bridge/cl-bridge-to-og.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-spd.obo b/bridge/cl-bridge-to-spd.obo index 20242f3422..4b0b2a72a6 100644 --- a/bridge/cl-bridge-to-spd.obo +++ b/bridge/cl-bridge-to-spd.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-spd -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-spd.owl b/bridge/cl-bridge-to-spd.owl index 1b5b4bf58d..059c40c559 100644 --- a/bridge/cl-bridge-to-spd.owl +++ b/bridge/cl-bridge-to-spd.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-tads.obo b/bridge/cl-bridge-to-tads.obo index 893d3ad602..4c3a150073 100644 --- a/bridge/cl-bridge-to-tads.obo +++ b/bridge/cl-bridge-to-tads.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tads -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-tads.owl b/bridge/cl-bridge-to-tads.owl index ce6dab9ad6..a7053f3859 100644 --- a/bridge/cl-bridge-to-tads.owl +++ b/bridge/cl-bridge-to-tads.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-tao.obo b/bridge/cl-bridge-to-tao.obo index a336afb1e2..c5c1761b7f 100644 --- a/bridge/cl-bridge-to-tao.obo +++ b/bridge/cl-bridge-to-tao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to tao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between TAO and CL. Note that TAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/bridge/cl-bridge-to-tao.owl b/bridge/cl-bridge-to-tao.owl index 99b145c420..d32433cf69 100644 --- a/bridge/cl-bridge-to-tao.owl +++ b/bridge/cl-bridge-to-tao.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-tgma.obo b/bridge/cl-bridge-to-tgma.obo index 277ea5e715..7a3187add6 100644 --- a/bridge/cl-bridge-to-tgma.obo +++ b/bridge/cl-bridge-to-tgma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-tgma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-tgma.owl b/bridge/cl-bridge-to-tgma.owl index d60df0d436..2f61d24d91 100644 --- a/bridge/cl-bridge-to-tgma.owl +++ b/bridge/cl-bridge-to-tgma.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-vsao.obo b/bridge/cl-bridge-to-vsao.obo index 30a5c545d0..8708442752 100644 --- a/bridge/cl-bridge-to-vsao.obo +++ b/bridge/cl-bridge-to-vsao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-vsao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to vsao" xsd:string property_value: dc-description "Equivalence axioms between VSAO and CL. Note that VSAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string diff --git a/bridge/cl-bridge-to-vsao.owl b/bridge/cl-bridge-to-vsao.owl index 6a2af5962c..2b01ccd425 100644 --- a/bridge/cl-bridge-to-vsao.owl +++ b/bridge/cl-bridge-to-vsao.owl @@ -22,7 +22,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-wbbt.obo b/bridge/cl-bridge-to-wbbt.obo index 25bb94f7d7..0f38db82f8 100644 --- a/bridge/cl-bridge-to-wbbt.obo +++ b/bridge/cl-bridge-to-wbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-wbbt -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/cl-bridge-to-wbbt.owl b/bridge/cl-bridge-to-wbbt.owl index 362ba683c6..f93b4d9840 100644 --- a/bridge/cl-bridge-to-wbbt.owl +++ b/bridge/cl-bridge-to-wbbt.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-xao.obo b/bridge/cl-bridge-to-xao.obo index 4efbb8d60f..c6c385ed70 100644 --- a/bridge/cl-bridge-to-xao.obo +++ b/bridge/cl-bridge-to-xao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-xao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to xao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between XAO and CL" xsd:string diff --git a/bridge/cl-bridge-to-xao.owl b/bridge/cl-bridge-to-xao.owl index d96f4f4886..5d094bd77c 100644 --- a/bridge/cl-bridge-to-xao.owl +++ b/bridge/cl-bridge-to-xao.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/cl-bridge-to-zfa.obo b/bridge/cl-bridge-to-zfa.obo index feb6196f56..bca775be84 100644 --- a/bridge/cl-bridge-to-zfa.obo +++ b/bridge/cl-bridge-to-zfa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/cl-bridge-to-zfa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "CL bridge to zfa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between ZFA and CL" xsd:string @@ -24,2504 +24,2497 @@ intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009222 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000495 ! +property_value: IAO:0000589 "blue sensitive photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000495 ! blue sensitive photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009181 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000359 ! +property_value: IAO:0000589 "vascular associated smooth muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000359 ! vascular associated smooth muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009005 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000017 ! +property_value: IAO:0000589 "spermatocyte (zebrafish)" xsd:string +intersection_of: CL:0000017 ! spermatocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009364 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000853 ! +property_value: IAO:0000589 "olfactory epithelial support cell (zebrafish)" xsd:string +intersection_of: CL:0000853 ! olfactory epithelial support cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009250 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000542 ! +property_value: IAO:0000589 "lymphocyte (zebrafish)" xsd:string +intersection_of: CL:0000542 ! lymphocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009100 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000167 ! +property_value: IAO:0000589 "peptide hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000167 ! peptide hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009116 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000189 ! +property_value: IAO:0000589 "slow muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000189 ! slow muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009290 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000679 ! +property_value: IAO:0000589 "glutamatergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000679 ! glutamatergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009273 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000598 ! +property_value: IAO:0000589 "pyramidal cell (zebrafish)" xsd:string +intersection_of: CL:0000598 ! pyramidal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009365 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000854 ! +property_value: IAO:0000589 "interneuromast cell (zebrafish)" xsd:string +intersection_of: CL:0000854 ! interneuromast cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009359 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000848 ! +property_value: IAO:0000589 "microvillous olfactory receptor neuron (zebrafish)" xsd:string +intersection_of: CL:0000848 ! microvillous olfactory receptor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009139 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000223 ! +property_value: IAO:0000589 "endodermal cell (zebrafish)" xsd:string +intersection_of: CL:0000223 ! endodermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009050 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000098 ! +property_value: IAO:0000589 "sensory epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000098 ! sensory epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009352 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000834 ! +property_value: IAO:0000589 "neutrophil progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000834 ! neutrophil progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009131 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000214 ! +property_value: IAO:0000589 "synovial cell (zebrafish)" xsd:string +intersection_of: CL:0000214 ! synovial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009172 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000344 ! +property_value: IAO:0000589 "obsolete non-visual cell (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000344 ! obsolete non-visual cell (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009331 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000785 ! +property_value: IAO:0000589 "mature B cell (zebrafish)" xsd:string +intersection_of: CL:0000785 ! mature B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009064 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000113 ! +property_value: IAO:0000589 "mononuclear phagocyte (zebrafish)" xsd:string +intersection_of: CL:0000113 ! mononuclear phagocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009044 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000081 ! +property_value: IAO:0000589 "blood cell (zebrafish)" xsd:string +intersection_of: CL:0000081 ! blood cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009392 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002320 ! +property_value: IAO:0000589 "connective tissue cell (zebrafish)" xsd:string +intersection_of: CL:0002320 ! connective tissue cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009066 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000116 ! +property_value: IAO:0000589 "pioneer neuron (zebrafish)" xsd:string +intersection_of: CL:0000116 ! pioneer neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009226 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000499 ! +property_value: IAO:0000589 "stromal cell (zebrafish)" xsd:string +intersection_of: CL:0000499 ! stromal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009094 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000160 ! +property_value: IAO:0000589 "goblet cell (zebrafish)" xsd:string +intersection_of: CL:0000160 ! goblet cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009054 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000102 ! +property_value: IAO:0000589 "polymodal neuron (zebrafish)" xsd:string +intersection_of: CL:0000102 ! polymodal neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009146 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000242 ! +property_value: IAO:0000589 "Merkel cell (zebrafish)" xsd:string +intersection_of: CL:0000242 ! Merkel cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009040 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000077 ! +property_value: IAO:0000589 "mesothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000077 ! mesothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009049 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000096 ! +property_value: IAO:0000589 "mature neutrophil (zebrafish)" xsd:string +intersection_of: CL:0000096 ! mature neutrophil intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009288 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000670 ! +property_value: IAO:0000589 "primordial germ cell (zebrafish)" xsd:string +intersection_of: CL:0000670 ! primordial germ cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009037 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000073 ! +property_value: IAO:0000589 "barrier epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000073 ! barrier epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009021 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000049 ! +property_value: IAO:0000589 "common myeloid progenitor (zebrafish)" xsd:string +intersection_of: CL:0000049 ! common myeloid progenitor intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009007 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000020 ! +property_value: IAO:0000589 "spermatogonium (zebrafish)" xsd:string +intersection_of: CL:0000020 ! spermatogonium intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009141 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000235 ! +property_value: IAO:0000589 "macrophage (zebrafish)" xsd:string +intersection_of: CL:0000235 ! macrophage intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009184 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000375 ! +property_value: IAO:0000589 "obsolete osteoprogenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000375 ! obsolete osteoprogenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009176 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000349 ! +property_value: IAO:0000589 "extraembryonic cell (zebrafish)" xsd:string +intersection_of: CL:0000349 ! extraembryonic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009321 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000751 ! +property_value: IAO:0000589 "rod bipolar cell (zebrafish)" xsd:string +intersection_of: CL:0000751 ! rod bipolar cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009241 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000529 ! +property_value: IAO:0000589 "pigmented epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000529 ! pigmented epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009073 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000125 ! +property_value: IAO:0000589 "glial cell (zebrafish)" xsd:string +intersection_of: CL:0000125 ! glial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009160 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000321 ! +property_value: IAO:0000589 "seminal fluid secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000321 ! seminal fluid secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005238 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000648 ! +property_value: IAO:0000589 "kidney granular cell (zebrafish)" xsd:string +intersection_of: CL:0000648 ! kidney granular cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009179 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000355 ! +property_value: IAO:0000589 "skeletal muscle stem cell (zebrafish)" xsd:string +intersection_of: CL:0000355 ! skeletal muscle stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009271 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000593 ! +property_value: IAO:0000589 "androgen secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000593 ! androgen secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009006 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000019 ! +property_value: IAO:0000589 "sperm (zebrafish)" xsd:string +intersection_of: CL:0000019 ! sperm intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009389 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1000497 ! +property_value: IAO:0000589 "kidney cell (zebrafish)" xsd:string +intersection_of: CL:1000497 ! kidney cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009124 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000206 ! +property_value: IAO:0000589 "chemoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000206 ! chemoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009330 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000781 ! +property_value: IAO:0000589 "mononuclear odontoclast (zebrafish)" xsd:string +intersection_of: CL:0000781 ! mononuclear odontoclast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009182 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000361 ! +property_value: IAO:0000589 "gastrula cell (zebrafish)" xsd:string +intersection_of: CL:0000361 ! gastrula cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009228 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000502 ! +property_value: IAO:0000589 "type D enteroendocrine cell (zebrafish)" xsd:string +intersection_of: CL:0000502 ! type D enteroendocrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009024 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000052 ! +property_value: IAO:0000589 "totipotent stem cell (zebrafish)" xsd:string +intersection_of: CL:0000052 ! totipotent stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009328 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000776 ! +property_value: IAO:0000589 "immature neutrophil (zebrafish)" xsd:string +intersection_of: CL:0000776 ! immature neutrophil intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009303 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000704 ! +property_value: IAO:0000589 "endothelial tip cell (zebrafish)" xsd:string +intersection_of: CL:0000704 ! endothelial tip cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009032 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000064 ! +property_value: IAO:0000589 "ciliated cell (zebrafish)" xsd:string +intersection_of: CL:0000064 ! ciliated cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005565 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002450 ! +property_value: IAO:0000589 "tether cell (zebrafish)" xsd:string +intersection_of: CL:0002450 ! tether cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009096 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000163 ! +property_value: IAO:0000589 "endocrine cell (zebrafish)" xsd:string +intersection_of: CL:0000163 ! endocrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009285 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000653 ! +property_value: IAO:0000589 "glomerular visceral epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000653 ! glomerular visceral epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009277 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000622 ! +property_value: IAO:0000589 "acinar cell (zebrafish)" xsd:string +intersection_of: CL:0000622 ! acinar cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009121 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000202 ! +property_value: IAO:0000589 "auditory hair cell (zebrafish)" xsd:string +intersection_of: CL:0000202 ! auditory hair cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009078 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000131 ! +property_value: IAO:0000589 "gut endothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000131 ! gut endothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009258 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000566 ! +property_value: IAO:0000589 "angioblastic mesenchymal cell (zebrafish)" xsd:string +intersection_of: CL:0000566 ! angioblastic mesenchymal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009216 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000467 ! +property_value: IAO:0000589 "adrenocorticotropic hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000467 ! adrenocorticotropic hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009093 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000153 ! +property_value: IAO:0000589 "GAG secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000153 ! GAG secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009294 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000683 ! +property_value: IAO:0000589 "ependymoglial cell (zebrafish)" xsd:string +intersection_of: CL:0000683 ! ependymoglial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009255 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000561 ! +property_value: IAO:0000589 "amacrine cell (zebrafish)" xsd:string +intersection_of: CL:0000561 ! amacrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009191 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000402 ! +property_value: IAO:0000589 "CNS interneuron (zebrafish)" xsd:string +intersection_of: CL:0000402 ! CNS interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005329 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005003 ! +property_value: IAO:0000589 "leucoblast (zebrafish)" xsd:string +intersection_of: CL:0005003 ! leucoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009247 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000536 ! +property_value: IAO:0000589 "secondary motor neuron (zebrafish)" xsd:string +intersection_of: CL:0000536 ! secondary motor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009154 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000287 ! +property_value: IAO:0000589 "eye photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000287 ! eye photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009329 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000778 ! +property_value: IAO:0000589 "mononuclear osteoclast (zebrafish)" xsd:string +intersection_of: CL:0000778 ! mononuclear osteoclast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009211 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000454 ! +property_value: IAO:0000589 "epinephrine secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000454 ! epinephrine secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009086 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000140 ! +property_value: IAO:0000589 "odontocyte (zebrafish)" xsd:string +intersection_of: CL:0000140 ! odontocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009062 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000110 ! +property_value: IAO:0000589 "peptidergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000110 ! peptidergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009342 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000813 ! +property_value: IAO:0000589 "memory T cell (zebrafish)" xsd:string +intersection_of: CL:0000813 ! memory T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009292 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000681 ! +property_value: IAO:0000589 "radial glial cell (zebrafish)" xsd:string +intersection_of: CL:0000681 ! radial glial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009046 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000804 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009332 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000786 ! +property_value: IAO:0000589 "plasma cell (zebrafish)" xsd:string +intersection_of: CL:0000786 ! plasma cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009156 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000300 ! +property_value: IAO:0000589 "gamete (zebrafish)" xsd:string +intersection_of: CL:0000300 ! gamete intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009267 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000581 ! +property_value: IAO:0000589 "peritoneal macrophage (zebrafish)" xsd:string +intersection_of: CL:0000581 ! peritoneal macrophage intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009151 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000249 ! +property_value: IAO:0000589 "hatching gland cell (zebrafish)" xsd:string +intersection_of: CL:0000249 ! hatching gland cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009299 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000693 ! +property_value: IAO:0000589 "neuroglioform cell (zebrafish)" xsd:string +intersection_of: CL:0000693 ! neuroglioform cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009354 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000837 ! +property_value: IAO:0000589 "hematopoietic multipotent progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000837 ! hematopoietic multipotent progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009295 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000686 ! +property_value: IAO:0000589 "cerebrospinal fluid secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000686 ! cerebrospinal fluid secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009057 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000105 ! +property_value: IAO:0000589 "pseudounipolar neuron (zebrafish)" xsd:string +intersection_of: CL:0000105 ! pseudounipolar neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009323 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000762 ! +property_value: IAO:0000589 "nucleated thrombocyte (zebrafish)" xsd:string +intersection_of: CL:0000762 ! nucleated thrombocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009162 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000327 ! +property_value: IAO:0000589 "extracellular matrix secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000327 ! extracellular matrix secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009079 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000132 ! +property_value: IAO:0000589 "corneal endothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000132 ! corneal endothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009169 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000339 ! +property_value: IAO:0000589 "glioblast (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000339 ! glioblast (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009391 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1000504 ! +property_value: IAO:0000589 "kidney medulla cell (zebrafish)" xsd:string +intersection_of: CL:1000504 ! kidney medulla cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009345 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000818 ! +property_value: IAO:0000589 "transitional stage B cell (zebrafish)" xsd:string +intersection_of: CL:0000818 ! transitional stage B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009261 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000571 ! +property_value: IAO:0000589 "leucophore (zebrafish)" xsd:string +intersection_of: CL:0000571 ! leucophore intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009276 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000617 ! +property_value: IAO:0000589 "GABAergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000617 ! GABAergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009121 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000201 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009085 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000139 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009002 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000007 ! +property_value: IAO:0000589 "early embryonic cell (zebrafish)" xsd:string +intersection_of: CL:0000007 ! early embryonic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009203 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000438 ! +property_value: IAO:0000589 "luteinizing hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000438 ! luteinizing hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009070 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000120 ! +property_value: IAO:0000589 "granule cell (zebrafish)" xsd:string +intersection_of: CL:0000120 ! granule cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009166 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000335 ! +property_value: IAO:0000589 "mesenchyme condensation cell (zebrafish)" xsd:string +intersection_of: CL:0000335 ! mesenchyme condensation cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009133 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000216 ! +property_value: IAO:0000589 "Sertoli cell (zebrafish)" xsd:string +intersection_of: CL:0000216 ! Sertoli cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009165 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000333 ! +property_value: IAO:0000589 "migratory neural crest cell (zebrafish)" xsd:string +intersection_of: CL:0000333 ! migratory neural crest cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005323 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005006 ! +property_value: IAO:0000589 "ionocyte (zebrafish)" xsd:string +intersection_of: CL:0005006 ! ionocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009396 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1001509 ! +property_value: IAO:0000589 "glycinergic neuron (zebrafish)" xsd:string +intersection_of: CL:1001509 ! glycinergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009240 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000528 ! +property_value: IAO:0000589 "nitrergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000528 ! nitrergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009149 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000246 ! +property_value: IAO:0000589 "Mauthner neuron (zebrafish)" xsd:string +intersection_of: CL:0000246 ! Mauthner neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009009 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000029 ! +property_value: IAO:0000589 "neuron neural crest derived (zebrafish)" xsd:string +intersection_of: CL:0000029 ! neuron neural crest derived intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009305 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000708 ! +property_value: IAO:0000589 "leptomeningeal cell (zebrafish)" xsd:string +intersection_of: CL:0000708 ! leptomeningeal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009143 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000239 ! +property_value: IAO:0000589 "brush border epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000239 ! brush border epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0000778 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005000 ! +property_value: IAO:0000589 "spinal cord interneuron (zebrafish)" xsd:string +intersection_of: CL:0005000 ! spinal cord interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009071 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000121 ! +property_value: IAO:0000589 "Purkinje cell (zebrafish)" xsd:string +intersection_of: CL:0000121 ! Purkinje cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009127 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000210 ! +property_value: IAO:0000589 "photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000210 ! photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009013 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000035 ! +property_value: IAO:0000589 "single fate stem cell (zebrafish)" xsd:string +intersection_of: CL:0000035 ! single fate stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009026 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000057 ! +property_value: IAO:0000589 "fibroblast (zebrafish)" xsd:string +intersection_of: CL:0000057 ! fibroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009137 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000221 ! +property_value: IAO:0000589 "ectodermal cell (zebrafish)" xsd:string +intersection_of: CL:0000221 ! ectodermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009263 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000574 ! +property_value: IAO:0000589 "erythrophore (zebrafish)" xsd:string +intersection_of: CL:0000574 ! erythrophore intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009107 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000177 ! +property_value: IAO:0000589 "testosterone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000177 ! testosterone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009322 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000752 ! +property_value: IAO:0000589 "cone retinal bipolar cell (zebrafish)" xsd:string +intersection_of: CL:0000752 ! cone retinal bipolar cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009103 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000170 ! +property_value: IAO:0000589 "glucagon secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000170 ! glucagon secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009315 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000745 ! +property_value: IAO:0000589 "horizontal cell (zebrafish)" xsd:string +intersection_of: CL:0000745 ! horizontal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009370 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1000082 ! +property_value: IAO:0000589 "stretch receptor cell (zebrafish)" xsd:string +intersection_of: CL:1000082 ! stretch receptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009301 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000700 ! +property_value: IAO:0000589 "dopaminergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000700 ! dopaminergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009302 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000703 ! +property_value: IAO:0000589 "sustentacular cell (zebrafish)" xsd:string +intersection_of: CL:0000703 ! sustentacular cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009106 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000174 ! +property_value: IAO:0000589 "steroid hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000174 ! steroid hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009388 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002078 ! +property_value: IAO:0000589 "meso-epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0002078 ! meso-epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009132 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000215 ! +property_value: IAO:0000589 "barrier cell (zebrafish)" xsd:string +intersection_of: CL:0000215 ! barrier cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009346 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000823 ! +property_value: IAO:0000589 "immature natural killer cell (zebrafish)" xsd:string +intersection_of: CL:0000823 ! immature natural killer cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009029 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000060 ! +property_value: IAO:0000589 "odontoblast (zebrafish)" xsd:string +intersection_of: CL:0000060 ! odontoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009134 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000217 ! +property_value: IAO:0000589 "insulating cell (zebrafish)" xsd:string +intersection_of: CL:0000217 ! insulating cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009311 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000741 ! +property_value: IAO:0000589 "spinal accessory motor neuron (zebrafish)" xsd:string +intersection_of: CL:0000741 ! spinal accessory motor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009174 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000347 ! +property_value: IAO:0000589 "scleral cell (zebrafish)" xsd:string +intersection_of: CL:0000347 ! scleral cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009033 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000065 ! +property_value: IAO:0000589 "ependymal cell (zebrafish)" xsd:string +intersection_of: CL:0000065 ! ependymal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009099 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000166 ! +property_value: IAO:0000589 "chromaffin cell (zebrafish)" xsd:string +intersection_of: CL:0000166 ! chromaffin cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009376 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005011 ! +property_value: IAO:0000589 "renal alpha-intercalated cell (zebrafish)" xsd:string +intersection_of: CL:0005011 ! renal alpha-intercalated cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009140 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000234 ! +property_value: IAO:0000589 "phagocyte (zebrafish)" xsd:string +intersection_of: CL:0000234 ! phagocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005599 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005018 ! +property_value: IAO:0000589 "ghrelin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0005018 ! ghrelin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009381 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005018 ! +property_value: IAO:0000589 "ghrelin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0005018 ! ghrelin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009198 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000430 ! +property_value: IAO:0000589 "xanthophore (zebrafish)" xsd:string +intersection_of: CL:0000430 ! xanthophore intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009113 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000185 ! +property_value: IAO:0000589 "myoepithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000185 ! myoepithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009180 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000357 ! +property_value: IAO:0000589 "stratified epithelial stem cell (zebrafish)" xsd:string +intersection_of: CL:0000357 ! stratified epithelial stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009358 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000847 ! +property_value: IAO:0000589 "ciliated olfactory receptor neuron (zebrafish)" xsd:string +intersection_of: CL:0000847 ! ciliated olfactory receptor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009272 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000594 ! +property_value: IAO:0000589 "skeletal muscle satellite cell (zebrafish)" xsd:string +intersection_of: CL:0000594 ! skeletal muscle satellite cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009004 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000011 ! +property_value: IAO:0000589 "migratory trunk neural crest cell (zebrafish)" xsd:string +intersection_of: CL:0000011 ! migratory trunk neural crest cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009028 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000059 ! +property_value: IAO:0000589 "ameloblast (zebrafish)" xsd:string +intersection_of: CL:0000059 ! ameloblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009016 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000039 ! +property_value: IAO:0000589 "germ line cell (zebrafish)" xsd:string +intersection_of: CL:0000039 ! germ line cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009243 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000532 ! +property_value: IAO:0000589 "CAP motoneuron (zebrafish)" xsd:string +intersection_of: CL:0000532 ! CAP motoneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005241 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000550 ! +property_value: IAO:0000589 "polychromatophilic erythroblast (zebrafish)" xsd:string +intersection_of: CL:0000550 ! polychromatophilic erythroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009083 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000137 ! +property_value: IAO:0000589 "osteocyte (zebrafish)" xsd:string +intersection_of: CL:0000137 ! osteocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009097 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000164 ! +property_value: IAO:0000589 "enteroendocrine cell (zebrafish)" xsd:string +intersection_of: CL:0000164 ! enteroendocrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009186 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000381 ! +property_value: IAO:0000589 "neurosecretory neuron (zebrafish)" xsd:string +intersection_of: CL:0000381 ! neurosecretory neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009039 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000076 ! +property_value: IAO:0000589 "squamous epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000076 ! squamous epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009316 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000746 ! +property_value: IAO:0000589 "cardiac muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000746 ! cardiac muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009220 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000490 ! +property_value: IAO:0000589 "photopic photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000490 ! photopic photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009335 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000789 ! +property_value: IAO:0000589 "alpha-beta T cell (zebrafish)" xsd:string +intersection_of: CL:0000789 ! alpha-beta T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009209 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000451 ! +property_value: IAO:0000589 "dendritic cell (zebrafish)" xsd:string +intersection_of: CL:0000451 ! dendritic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009375 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005010 ! +property_value: IAO:0000589 "renal intercalated cell (zebrafish)" xsd:string +intersection_of: CL:0005010 ! renal intercalated cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009393 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005020 ! +property_value: IAO:0000589 "lymphangioblast (zebrafish)" xsd:string +intersection_of: CL:0005020 ! lymphangioblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009339 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000801 ! +property_value: IAO:0000589 "gamma-delta intraepithelial T cell (zebrafish)" xsd:string +intersection_of: CL:0000801 ! gamma-delta intraepithelial T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009293 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000682 ! +property_value: IAO:0000589 "M cell of gut (zebrafish)" xsd:string +intersection_of: CL:0000682 ! M cell of gut intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009199 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000431 ! +property_value: IAO:0000589 "iridophore (zebrafish)" xsd:string +intersection_of: CL:0000431 ! iridophore intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009259 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000569 ! +property_value: IAO:0000589 "cardiac mesenchymal cell (zebrafish)" xsd:string +intersection_of: CL:0000569 ! cardiac mesenchymal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009309 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000738 ! +property_value: IAO:0000589 "leukocyte (zebrafish)" xsd:string +intersection_of: CL:0000738 ! leukocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009027 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000058 ! +property_value: IAO:0000589 "chondroblast (zebrafish)" xsd:string +intersection_of: CL:0000058 ! chondroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009082 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000136 ! +property_value: IAO:0000589 "fat cell (zebrafish)" xsd:string +intersection_of: CL:0000136 ! fat cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009059 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000107 ! +property_value: IAO:0000589 "autonomic neuron (zebrafish)" xsd:string +intersection_of: CL:0000107 ! autonomic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009150 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000247 ! +property_value: IAO:0000589 "Rohon-Beard neuron (zebrafish)" xsd:string +intersection_of: CL:0000247 ! Rohon-Beard neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009368 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000857 ! +property_value: IAO:0000589 "slow muscle myoblast (zebrafish)" xsd:string +intersection_of: CL:0000857 ! slow muscle myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009159 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000319 ! +property_value: IAO:0000589 "mucus secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000319 ! mucus secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009090 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000147 ! +property_value: IAO:0000589 "pigment cell (zebrafish)" xsd:string +intersection_of: CL:0000147 ! pigment cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009201 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000435 ! +property_value: IAO:0000589 "alkali secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000435 ! alkali secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005328 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005001 ! +property_value: IAO:0000589 "iridoblast (zebrafish)" xsd:string +intersection_of: CL:0005001 ! iridoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009194 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000406 ! +property_value: IAO:0000589 "CNS short range interneuron (zebrafish)" xsd:string +intersection_of: CL:0000406 ! CNS short range interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009317 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000747 ! +property_value: IAO:0000589 "cyanophore (zebrafish)" xsd:string +intersection_of: CL:0000747 ! cyanophore intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009212 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000457 ! +property_value: IAO:0000589 "biogenic amine secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000457 ! biogenic amine secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009017 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000040 ! +property_value: IAO:0000589 "monoblast (zebrafish)" xsd:string +intersection_of: CL:0000040 ! monoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009284 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000652 ! +property_value: IAO:0000589 "pinealocyte (zebrafish)" xsd:string +intersection_of: CL:0000652 ! pinealocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009291 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000680 ! +property_value: IAO:0000589 "muscle precursor cell (zebrafish)" xsd:string +intersection_of: CL:0000680 ! muscle precursor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009001 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000006 ! +property_value: IAO:0000589 "neuronal receptor cell (zebrafish)" xsd:string +intersection_of: CL:0000006 ! neuronal receptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009324 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000763 ! +property_value: IAO:0000589 "myeloid cell (zebrafish)" xsd:string +intersection_of: CL:0000763 ! myeloid cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009111 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000182 ! +property_value: IAO:0000589 "hepatocyte (zebrafish)" xsd:string +intersection_of: CL:0000182 ! hepatocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009336 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000798 ! +property_value: IAO:0000589 "gamma-delta T cell (zebrafish)" xsd:string +intersection_of: CL:0000798 ! gamma-delta T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009015 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000038 ! +property_value: IAO:0000589 "erythroid progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000038 ! erythroid progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005598 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005019 ! +property_value: IAO:0000589 "pancreatic epsilon cell (zebrafish)" xsd:string +intersection_of: CL:0005019 ! pancreatic epsilon cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009382 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005019 ! +property_value: IAO:0000589 "pancreatic epsilon cell (zebrafish)" xsd:string +intersection_of: CL:0005019 ! pancreatic epsilon cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009223 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000496 ! +property_value: IAO:0000589 "green sensitive photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000496 ! green sensitive photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009055 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000103 ! +property_value: IAO:0000589 "bipolar neuron (zebrafish)" xsd:string +intersection_of: CL:0000103 ! bipolar neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009312 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000742 ! +property_value: IAO:0000589 "periarticular chondrocyte (zebrafish)" xsd:string +intersection_of: CL:0000742 ! periarticular chondrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009048 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000094 ! +property_value: IAO:0000589 "granulocyte (zebrafish)" xsd:string +intersection_of: CL:0000094 ! granulocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009147 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000243 ! +property_value: IAO:0000589 "glial cell (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000243 ! glial cell (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009080 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000133 ! +property_value: IAO:0000589 "neurectodermal cell (zebrafish)" xsd:string +intersection_of: CL:0000133 ! neurectodermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009361 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000403 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009153 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000253 ! +property_value: IAO:0000589 "eurydendroid cell (zebrafish)" xsd:string +intersection_of: CL:0000253 ! eurydendroid cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009138 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000222 ! +property_value: IAO:0000589 "mesodermal cell (zebrafish)" xsd:string +intersection_of: CL:0000222 ! mesodermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009306 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000710 ! +property_value: IAO:0000589 "neurecto-epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000710 ! neurecto-epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009384 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000710 ! +property_value: IAO:0000589 "neurecto-epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000710 ! neurecto-epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009256 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000562 ! +property_value: IAO:0000589 "nucleate erythrocyte (zebrafish)" xsd:string +intersection_of: CL:0000562 ! nucleate erythrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001694 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000626 ! +property_value: IAO:0000589 "olfactory granule cell (zebrafish)" xsd:string +intersection_of: CL:0000626 ! olfactory granule cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009281 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000642 ! +property_value: IAO:0000589 "folliculostellate cell (zebrafish)" xsd:string +intersection_of: CL:0000642 ! folliculostellate cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009275 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000604 ! +property_value: IAO:0000589 "retinal rod cell (zebrafish)" xsd:string +intersection_of: CL:0000604 ! retinal rod cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009196 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000411 ! +property_value: IAO:0000589 "flatworm hypodermal cell (zebrafish)" xsd:string +intersection_of: CL:0000411 ! flatworm hypodermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009118 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000192 ! +property_value: IAO:0000589 "smooth muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005332 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005005 ! +property_value: IAO:0000589 "cyanoblast (zebrafish)" xsd:string +intersection_of: CL:0005005 ! cyanoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005240 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005007 ! +property_value: IAO:0000589 "Kolmer-Agduhr neuron (zebrafish)" xsd:string +intersection_of: CL:0005007 ! Kolmer-Agduhr neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009387 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000630 ! +property_value: IAO:0000589 "supportive cell (zebrafish)" xsd:string +intersection_of: CL:0000630 ! supportive cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009270 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000588 ! +property_value: IAO:0000589 "odontoclast (zebrafish)" xsd:string +intersection_of: CL:0000588 ! odontoclast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009189 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000388 ! +property_value: IAO:0000589 "tendon cell (zebrafish)" xsd:string +intersection_of: CL:0000388 ! tendon cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009177 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000353 ! +property_value: IAO:0000589 "blastoderm cell (zebrafish)" xsd:string +intersection_of: CL:0000353 ! blastoderm cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009128 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000211 ! +property_value: IAO:0000589 "electrically active cell (zebrafish)" xsd:string +intersection_of: CL:0000211 ! electrically active cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009012 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000032 ! +property_value: IAO:0000589 "neuroplacodal cell (zebrafish)" xsd:string +intersection_of: CL:0000032 ! neuroplacodal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009351 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000828 ! +property_value: IAO:0000589 "thromboblast (zebrafish)" xsd:string +intersection_of: CL:0000828 ! thromboblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009058 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000106 ! +property_value: IAO:0000589 "unipolar neuron (zebrafish)" xsd:string +intersection_of: CL:0000106 ! unipolar neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009119 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000198 ! +property_value: IAO:0000589 "pain receptor cell (zebrafish)" xsd:string +intersection_of: CL:0000198 ! pain receptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009230 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000505 ! +property_value: IAO:0000589 "substance P secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000505 ! substance P secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009246 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000535 ! +property_value: IAO:0000589 "secondary neuron (zebrafish)" xsd:string +intersection_of: CL:0000535 ! secondary neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009318 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000748 ! +property_value: IAO:0000589 "retinal bipolar neuron (zebrafish)" xsd:string +intersection_of: CL:0000748 ! retinal bipolar neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009327 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000775 ! +property_value: IAO:0000589 "neutrophil (zebrafish)" xsd:string +intersection_of: CL:0000775 ! neutrophil intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009171 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000343 ! +property_value: IAO:0000589 "visual pigment cell (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000343 ! visual pigment cell (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009114 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000187 ! +property_value: IAO:0000589 "muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000187 ! muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009155 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000295 ! +property_value: IAO:0000589 "somatotropin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000295 ! somatotropin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009167 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000336 ! +property_value: IAO:0000589 "adrenal medulla chromaffin cell (zebrafish)" xsd:string +intersection_of: CL:0000336 ! adrenal medulla chromaffin cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009297 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000691 ! +property_value: IAO:0000589 "stellate interneuron (zebrafish)" xsd:string +intersection_of: CL:0000691 ! stellate interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009245 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000534 ! +property_value: IAO:0000589 "primary interneuron (zebrafish)" xsd:string +intersection_of: CL:0000534 ! primary interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009334 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000788 ! +property_value: IAO:0000589 "naive B cell (zebrafish)" xsd:string +intersection_of: CL:0000788 ! naive B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009356 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000839 ! +property_value: IAO:0000589 "myeloid lineage restricted progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000839 ! myeloid lineage restricted progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009304 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000706 ! +property_value: IAO:0000589 "choroid plexus epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000706 ! choroid plexus epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009019 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000047 ! +property_value: IAO:0000589 "neuronal stem cell (zebrafish)" xsd:string +intersection_of: CL:0000047 ! neuronal stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009046 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000084 ! +property_value: IAO:0000589 "T cell (zebrafish)" xsd:string +intersection_of: CL:0000084 ! T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009252 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000558 ! +property_value: IAO:0000589 "reticulocyte (zebrafish)" xsd:string +intersection_of: CL:0000558 ! reticulocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005244 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005014 ! +property_value: IAO:0000589 "auditory epithelial support cell (zebrafish)" xsd:string +intersection_of: CL:0005014 ! auditory epithelial support cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009190 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000393 ! +property_value: IAO:0000589 "electrically responsive cell (zebrafish)" xsd:string +intersection_of: CL:0000393 ! electrically responsive cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009362 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000851 ! +property_value: IAO:0000589 "neuromast mantle cell (zebrafish)" xsd:string +intersection_of: CL:0000851 ! neuromast mantle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009266 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000580 ! +property_value: IAO:0000589 "neutrophilic myelocyte (zebrafish)" xsd:string +intersection_of: CL:0000580 ! neutrophilic myelocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009035 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000067 ! +property_value: IAO:0000589 "ciliated epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000067 ! ciliated epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009045 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000083 ! +property_value: IAO:0000589 "epithelial cell of pancreas (zebrafish)" xsd:string +intersection_of: CL:0000083 ! epithelial cell of pancreas intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009109 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000179 ! +property_value: IAO:0000589 "progesterone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000179 ! progesterone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009102 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000169 ! +property_value: IAO:0000589 "type B pancreatic cell (zebrafish)" xsd:string +intersection_of: CL:0000169 ! type B pancreatic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009239 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000527 ! +property_value: IAO:0000589 "efferent neuron (zebrafish)" xsd:string +intersection_of: CL:0000527 ! efferent neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009091 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000148 ! +property_value: IAO:0000589 "melanocyte (zebrafish)" xsd:string +intersection_of: CL:0000148 ! melanocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009298 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000692 ! +property_value: IAO:0000589 "terminal Schwann cell (zebrafish)" xsd:string +intersection_of: CL:0000692 ! terminal Schwann cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009280 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000636 ! +property_value: IAO:0000589 "Mueller cell (zebrafish)" xsd:string +intersection_of: CL:0000636 ! Mueller cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009287 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000667 ! +property_value: IAO:0000589 "collagen secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000667 ! collagen secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009234 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000513 ! +property_value: IAO:0000589 "cardiac muscle myoblast (zebrafish)" xsd:string +intersection_of: CL:0000513 ! cardiac muscle myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001725 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002377 ! +property_value: IAO:0000589 "immature Schwann cell (zebrafish)" xsd:string +intersection_of: CL:0002377 ! immature Schwann cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009206 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000443 ! +property_value: IAO:0000589 "calcitonin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000443 ! calcitonin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009152 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000251 ! +property_value: IAO:0000589 "extramedullary cell (zebrafish)" xsd:string +intersection_of: CL:0000251 ! extramedullary cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009269 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000584 ! +property_value: IAO:0000589 "enterocyte (zebrafish)" xsd:string +intersection_of: CL:0000584 ! enterocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009098 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000165 ! +property_value: IAO:0000589 "neuroendocrine cell (zebrafish)" xsd:string +intersection_of: CL:0000165 ! neuroendocrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009308 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000731 ! +property_value: IAO:0000589 "urothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000731 ! urothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009060 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000108 ! +property_value: IAO:0000589 "cholinergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000108 ! cholinergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009395 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005022 ! +property_value: IAO:0000589 "vascular lymphangioblast (zebrafish)" xsd:string +intersection_of: CL:0005022 ! vascular lymphangioblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009355 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000838 ! +property_value: IAO:0000589 "lymphoid lineage restricted progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000838 ! lymphoid lineage restricted progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009204 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000439 ! +property_value: IAO:0000589 "prolactin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000439 ! prolactin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005236 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000549 ! +property_value: IAO:0000589 "basophilic erythroblast (zebrafish)" xsd:string +intersection_of: CL:0000549 ! basophilic erythroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009357 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000842 ! +property_value: IAO:0000589 "mononuclear cell (zebrafish)" xsd:string +intersection_of: CL:0000842 ! mononuclear cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009168 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000337 ! +property_value: IAO:0000589 "neuroblast (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000337 ! neuroblast (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009229 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000503 ! +property_value: IAO:0000589 "theca cell (zebrafish)" xsd:string +intersection_of: CL:0000503 ! theca cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009310 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000740 ! +property_value: IAO:0000589 "retinal ganglion cell (zebrafish)" xsd:string +intersection_of: CL:0000740 ! retinal ganglion cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009210 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000452 ! +property_value: IAO:0000589 "thyroid hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000452 ! thyroid hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009257 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000564 ! +property_value: IAO:0000589 "neutrophilic promyelocyte (zebrafish)" xsd:string +intersection_of: CL:0000564 ! neutrophilic promyelocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009347 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000824 ! +property_value: IAO:0000589 "mature natural killer cell (zebrafish)" xsd:string +intersection_of: CL:0000824 ! mature natural killer cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009157 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000311 ! +property_value: IAO:0000589 "keratin accumulating cell (zebrafish)" xsd:string +intersection_of: CL:0000311 ! keratin accumulating cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0000084 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000428 ! +property_value: IAO:0000589 "yolk cell (zebrafish)" xsd:string +intersection_of: CL:0000428 ! yolk cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009248 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000540 ! +property_value: IAO:0000589 "neuron (zebrafish)" xsd:string +intersection_of: CL:0000540 ! neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009022 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000050 ! +property_value: IAO:0000589 "megakaryocyte-erythroid progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000050 ! megakaryocyte-erythroid progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009274 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000602 ! +property_value: IAO:0000589 "pressoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000602 ! pressoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009145 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000241 ! +property_value: IAO:0000589 "stratified cuboidal epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000241 ! stratified cuboidal epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009300 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000695 ! +property_value: IAO:0000589 "Cajal-Retzius cell (zebrafish)" xsd:string +intersection_of: CL:0000695 ! Cajal-Retzius cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009237 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000516 ! +property_value: IAO:0000589 "perineuronal satellite cell (zebrafish)" xsd:string +intersection_of: CL:0000516 ! perineuronal satellite cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009231 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000506 ! +property_value: IAO:0000589 "enkephalin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000506 ! enkephalin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009348 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000825 ! +property_value: IAO:0000589 "pro-NK cell (zebrafish)" xsd:string +intersection_of: CL:0000825 ! pro-NK cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009082 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000450 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009289 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000677 ! +property_value: IAO:0000589 "gut absorptive cell (zebrafish)" xsd:string +intersection_of: CL:0000677 ! gut absorptive cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009148 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000244 ! +property_value: IAO:0000589 "transitional epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000244 ! transitional epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009313 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000743 ! +property_value: IAO:0000589 "hypertrophic chondrocyte (zebrafish)" xsd:string +intersection_of: CL:0000743 ! hypertrophic chondrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009215 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000460 ! +property_value: IAO:0000589 "glucocorticoid secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000460 ! glucocorticoid secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009394 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005021 ! +property_value: IAO:0000589 "mesenchymal lymphangioblast (zebrafish)" xsd:string +intersection_of: CL:0005021 ! mesenchymal lymphangioblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009063 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000111 ! +property_value: IAO:0000589 "peripheral neuron (zebrafish)" xsd:string +intersection_of: CL:0000111 ! peripheral neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009213 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000458 ! +property_value: IAO:0000589 "serotonin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000458 ! serotonin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009232 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000507 ! +property_value: IAO:0000589 "endorphin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000507 ! endorphin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009126 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000209 ! +property_value: IAO:0000589 "taste receptor cell (zebrafish)" xsd:string +intersection_of: CL:0000209 ! taste receptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009217 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000470 ! +property_value: IAO:0000589 "digestive enzyme secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000470 ! digestive enzyme secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009052 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000100 ! +property_value: IAO:0000589 "motor neuron (zebrafish)" xsd:string +intersection_of: CL:0000100 ! motor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005331 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005004 ! +property_value: IAO:0000589 "pigment erythroblast (zebrafish)" xsd:string +intersection_of: CL:0005004 ! pigment erythroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009325 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000764 ! +property_value: IAO:0000589 "erythroid lineage cell (zebrafish)" xsd:string +intersection_of: CL:0000764 ! erythroid lineage cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009081 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000134 ! +property_value: IAO:0000589 "mesenchymal cell (zebrafish)" xsd:string +intersection_of: CL:0000134 ! mesenchymal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009163 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000328 ! +property_value: IAO:0000589 "myelin accumulating cell (zebrafish)" xsd:string +intersection_of: CL:0000328 ! myelin accumulating cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009238 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000526 ! +property_value: IAO:0000589 "afferent neuron (zebrafish)" xsd:string +intersection_of: CL:0000526 ! afferent neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009135 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000218 ! +property_value: IAO:0000589 "myelinating Schwann cell (zebrafish)" xsd:string +intersection_of: CL:0000218 ! myelinating Schwann cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009187 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000383 ! +property_value: IAO:0000589 "nephrogenic mesenchyme stem cell (zebrafish)" xsd:string +intersection_of: CL:0000383 ! nephrogenic mesenchyme stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009088 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000145 ! +property_value: IAO:0000589 "professional antigen presenting cell (zebrafish)" xsd:string +intersection_of: CL:0000145 ! professional antigen presenting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009296 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000688 ! +property_value: IAO:0000589 "perijunctional fibroblast (zebrafish)" xsd:string +intersection_of: CL:0000688 ! perijunctional fibroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009120 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000199 ! +property_value: IAO:0000589 "mechanoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000199 ! mechanoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009343 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000816 ! +property_value: IAO:0000589 "immature B cell (zebrafish)" xsd:string +intersection_of: CL:0000816 ! immature B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009056 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000104 ! +property_value: IAO:0000589 "multipolar neuron (zebrafish)" xsd:string +intersection_of: CL:0000104 ! multipolar neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009195 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000410 ! +property_value: IAO:0000589 "CNS long range interneuron (zebrafish)" xsd:string +intersection_of: CL:0000410 ! CNS long range interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009200 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000432 ! +property_value: IAO:0000589 "reticular cell (zebrafish)" xsd:string +intersection_of: CL:0000432 ! reticular cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009251 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000557 ! +property_value: IAO:0000589 "granulocyte monocyte progenitor cell (zebrafish)" xsd:string +intersection_of: CL:0000557 ! granulocyte monocyte progenitor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009042 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000079 ! +property_value: IAO:0000589 "stratified epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000079 ! stratified epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009219 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000488 ! +property_value: IAO:0000589 "visible light photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000488 ! visible light photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009371 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1000083 ! +property_value: IAO:0000589 "stratified keratinized epithelial stem cell (zebrafish)" xsd:string +intersection_of: CL:1000083 ! stratified keratinized epithelial stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009036 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000071 ! +property_value: IAO:0000589 "blood vessel endothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000071 ! blood vessel endothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009193 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000404 ! +property_value: IAO:0000589 "electrically signaling cell (zebrafish)" xsd:string +intersection_of: CL:0000404 ! electrically signaling cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009338 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000800 ! +property_value: IAO:0000589 "mature gamma-delta T cell (zebrafish)" xsd:string +intersection_of: CL:0000800 ! mature gamma-delta T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009326 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000766 ! +property_value: IAO:0000589 "myeloid leukocyte (zebrafish)" xsd:string +intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009065 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000115 ! +property_value: IAO:0000589 "endothelial cell (zebrafish)" xsd:string +intersection_of: CL:0000115 ! endothelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009279 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000632 ! +property_value: IAO:0000589 "hepatic stellate cell (zebrafish)" xsd:string +intersection_of: CL:0000632 ! hepatic stellate cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009173 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000345 ! +property_value: IAO:0000589 "dental papilla cell (zebrafish)" xsd:string +intersection_of: CL:0000345 ! dental papilla cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009129 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000212 ! +property_value: IAO:0000589 "absorptive cell (zebrafish)" xsd:string +intersection_of: CL:0000212 ! absorptive cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009224 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000497 ! +property_value: IAO:0000589 "red sensitive photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000497 ! red sensitive photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009183 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000362 ! +property_value: IAO:0000589 "epidermal cell (zebrafish)" xsd:string +intersection_of: CL:0000362 ! epidermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009123 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000205 ! +property_value: IAO:0000589 "thermoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000205 ! thermoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009337 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000799 ! +property_value: IAO:0000589 "immature gamma-delta T cell (zebrafish)" xsd:string +intersection_of: CL:0000799 ! immature gamma-delta T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009386 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002371 ! +property_value: IAO:0000589 "somatic cell (zebrafish)" xsd:string +intersection_of: CL:0002371 ! somatic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009242 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000530 ! +property_value: IAO:0000589 "primary neuron (zebrafish)" xsd:string +intersection_of: CL:0000530 ! primary neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009095 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000161 ! +property_value: IAO:0000589 "acid secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000161 ! acid secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009069 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000119 ! +property_value: IAO:0000589 "Golgi cell (zebrafish)" xsd:string +intersection_of: CL:0000119 ! Golgi cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005245 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005002 ! +property_value: IAO:0000589 "xanthoblast (zebrafish)" xsd:string +intersection_of: CL:0005002 ! xanthoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009367 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000856 ! +property_value: IAO:0000589 "neuromast hair cell (zebrafish)" xsd:string +intersection_of: CL:0000856 ! neuromast hair cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009011 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000031 ! +property_value: IAO:0000589 "neuroblast (zebrafish)" xsd:string +intersection_of: CL:0000031 ! neuroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009104 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000171 ! +property_value: IAO:0000589 "pancreatic A cell (zebrafish)" xsd:string +intersection_of: CL:0000171 ! pancreatic A cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009076 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000128 ! +property_value: IAO:0000589 "oligodendrocyte (zebrafish)" xsd:string +intersection_of: CL:0000128 ! oligodendrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009144 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000240 ! +property_value: IAO:0000589 "stratified squamous epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000240 ! stratified squamous epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009020 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000048 ! +property_value: IAO:0000589 "multi fate stem cell (zebrafish)" xsd:string +intersection_of: CL:0000048 ! multi fate stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009047 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000092 ! +property_value: IAO:0000589 "osteoclast (zebrafish)" xsd:string +intersection_of: CL:0000092 ! osteoclast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009170 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000342 ! +property_value: IAO:0000589 "pigment cell (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000342 ! pigment cell (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009233 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000512 ! +property_value: IAO:0000589 "paracrine cell (zebrafish)" xsd:string +intersection_of: CL:0000512 ! paracrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009043 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000080 ! +property_value: IAO:0000589 "circulating cell (zebrafish)" xsd:string +intersection_of: CL:0000080 ! circulating cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009320 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000750 ! +property_value: IAO:0000589 "OFF-bipolar cell (zebrafish)" xsd:string +intersection_of: CL:0000750 ! OFF-bipolar cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009207 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000446 ! +property_value: IAO:0000589 "chief cell of parathyroid gland (zebrafish)" xsd:string +intersection_of: CL:0000446 ! chief cell of parathyroid gland intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009053 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000101 ! +property_value: IAO:0000589 "sensory neuron (zebrafish)" xsd:string +intersection_of: CL:0000101 ! sensory neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009117 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000190 ! +property_value: IAO:0000589 "fast muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000190 ! fast muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009178 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000354 ! +property_value: IAO:0000589 "blastemal cell (zebrafish)" xsd:string +intersection_of: CL:0000354 ! blastemal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009221 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000494 ! +property_value: IAO:0000589 "UV sensitive photoreceptor cell (zebrafish)" xsd:string +intersection_of: CL:0000494 ! UV sensitive photoreceptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009214 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000459 ! +property_value: IAO:0000589 "norepinephrin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000459 ! norepinephrin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009369 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000858 ! +property_value: IAO:0000589 "fast muscle myoblast (zebrafish)" xsd:string +intersection_of: CL:0000858 ! fast muscle myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009307 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000723 ! +property_value: IAO:0000589 "somatic stem cell (zebrafish)" xsd:string +intersection_of: CL:0000723 ! somatic stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009158 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000312 ! +property_value: IAO:0000589 "keratinocyte (zebrafish)" xsd:string +intersection_of: CL:0000312 ! keratinocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009061 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000109 ! +property_value: IAO:0000589 "adrenergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000109 ! adrenergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009253 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000559 ! +property_value: IAO:0000589 "promonocyte (zebrafish)" xsd:string +intersection_of: CL:0000559 ! promonocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009350 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000827 ! +property_value: IAO:0000589 "pro-T cell (zebrafish)" xsd:string +intersection_of: CL:0000827 ! pro-T cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009385 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002077 ! +property_value: IAO:0000589 "ecto-epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0002077 ! ecto-epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009278 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000623 ! +property_value: IAO:0000589 "natural killer cell (zebrafish)" xsd:string +intersection_of: CL:0000623 ! natural killer cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005237 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000765 ! +property_value: IAO:0000589 "erythroblast (zebrafish)" xsd:string +intersection_of: CL:0000765 ! erythroblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009205 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000440 ! +property_value: IAO:0000589 "melanocyte stimulating hormone secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000440 ! melanocyte stimulating hormone secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009225 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000498 ! +property_value: IAO:0000589 "inhibitory interneuron (zebrafish)" xsd:string +intersection_of: CL:0000498 ! inhibitory interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009101 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000168 ! +property_value: IAO:0000589 "insulin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000168 ! insulin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009087 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000141 ! +property_value: IAO:0000589 "cementocyte (zebrafish)" xsd:string +intersection_of: CL:0000141 ! cementocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009105 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000172 ! +property_value: IAO:0000589 "somatostatin secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000172 ! somatostatin secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009164 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000329 ! +property_value: IAO:0000589 "oxygen accumulating cell (zebrafish)" xsd:string +intersection_of: CL:0000329 ! oxygen accumulating cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009202 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000437 ! +property_value: IAO:0000589 "gonadtroph (zebrafish)" xsd:string +intersection_of: CL:0000437 ! gonadtroph intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009068 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000118 ! +property_value: IAO:0000589 "basket cell (zebrafish)" xsd:string +intersection_of: CL:0000118 ! basket cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009051 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000099 ! +property_value: IAO:0000589 "interneuron (zebrafish)" xsd:string +intersection_of: CL:0000099 ! interneuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005243 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005013 ! +property_value: IAO:0000589 "single ciliated epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0005013 ! single ciliated epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009378 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005013 ! +property_value: IAO:0000589 "single ciliated epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0005013 ! single ciliated epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009031 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000062 ! +property_value: IAO:0000589 "osteoblast (zebrafish)" xsd:string +intersection_of: CL:0000062 ! osteoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009244 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000533 ! +property_value: IAO:0000589 "primary motor neuron (zebrafish)" xsd:string +intersection_of: CL:0000533 ! primary motor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009218 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000476 ! +property_value: IAO:0000589 "thyrotroph (zebrafish)" xsd:string +intersection_of: CL:0000476 ! thyrotroph intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009363 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000852 ! +property_value: IAO:0000589 "neuromast support cell (zebrafish)" xsd:string +intersection_of: CL:0000852 ! neuromast support cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009249 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000541 ! +property_value: IAO:0000589 "melanoblast (zebrafish)" xsd:string +intersection_of: CL:0000541 ! melanoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009283 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000650 ! +property_value: IAO:0000589 "mesangial cell (zebrafish)" xsd:string +intersection_of: CL:0000650 ! mesangial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009235 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000514 ! +property_value: IAO:0000589 "smooth muscle myoblast (zebrafish)" xsd:string +intersection_of: CL:0000514 ! smooth muscle myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009314 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000744 ! +property_value: IAO:0000589 "columnar chondrocyte (zebrafish)" xsd:string +intersection_of: CL:0000744 ! columnar chondrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009333 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000787 ! +property_value: IAO:0000589 "memory B cell (zebrafish)" xsd:string +intersection_of: CL:0000787 ! memory B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009286 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000666 ! +property_value: IAO:0000589 "fenestrated cell (zebrafish)" xsd:string +intersection_of: CL:0000666 ! fenestrated cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009067 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000117 ! +property_value: IAO:0000589 "CNS neuron (sensu Vertebrata) (zebrafish)" xsd:string +intersection_of: CL:0000117 ! CNS neuron (sensu Vertebrata) intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009014 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000037 ! +property_value: IAO:0000589 "hematopoietic stem cell (zebrafish)" xsd:string +intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009161 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000324 ! +property_value: IAO:0000589 "metanephric mesenchyme stem cell (zebrafish)" xsd:string +intersection_of: CL:0000324 ! metanephric mesenchyme stem cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009077 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000129 ! +property_value: IAO:0000589 "microglial cell (zebrafish)" xsd:string +intersection_of: CL:0000129 ! microglial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009074 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000126 ! +property_value: IAO:0000589 "macroglial cell (zebrafish)" xsd:string +intersection_of: CL:0000126 ! macroglial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009115 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000188 ! +property_value: IAO:0000589 "skeletal muscle cell (zebrafish)" xsd:string +intersection_of: CL:0000188 ! skeletal muscle cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009125 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000207 ! +property_value: IAO:0000589 "olfactory receptor cell (zebrafish)" xsd:string +intersection_of: CL:0000207 ! olfactory receptor cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009175 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000348 ! +property_value: IAO:0000589 "choroidal cell of the eye (zebrafish)" xsd:string +intersection_of: CL:0000348 ! choroidal cell of the eye intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009110 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000180 ! +property_value: IAO:0000589 "estradiol secreting cell (zebrafish)" xsd:string +intersection_of: CL:0000180 ! estradiol secreting cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009319 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000749 ! +property_value: IAO:0000589 "ON-bipolar cell (zebrafish)" xsd:string +intersection_of: CL:0000749 ! ON-bipolar cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009010 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000030 ! +property_value: IAO:0000589 "glioblast (zebrafish)" xsd:string +intersection_of: CL:0000030 ! glioblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005322 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005009 ! +property_value: IAO:0000589 "renal principal cell (zebrafish)" xsd:string +intersection_of: CL:0005009 ! renal principal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009373 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005009 ! +property_value: IAO:0000589 "renal principal cell (zebrafish)" xsd:string +intersection_of: CL:0005009 ! renal principal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009000 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000000 ! +property_value: IAO:0000589 "cell (zebrafish)" xsd:string +intersection_of: CL:0000000 ! cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009262 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000573 ! +property_value: IAO:0000589 "retinal cone cell (zebrafish)" xsd:string +intersection_of: CL:0000573 ! retinal cone cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009260 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000570 ! +property_value: IAO:0000589 "parafollicular cell (zebrafish)" xsd:string +intersection_of: CL:0000570 ! parafollicular cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009374 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0002518 ! +property_value: IAO:0000589 "kidney epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0002518 ! kidney epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009254 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000560 ! +property_value: IAO:0000589 "band form neutrophil (zebrafish)" xsd:string +intersection_of: CL:0000560 ! band form neutrophil intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009236 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000515 ! +property_value: IAO:0000589 "skeletal muscle myoblast (zebrafish)" xsd:string +intersection_of: CL:0000515 ! skeletal muscle myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001691 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000989 ! +property_value: IAO:0000589 "CD11c-low plasmacytoid dendritic cell (zebrafish)" xsd:string +intersection_of: CL:0000989 ! CD11c-low plasmacytoid dendritic cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009038 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000075 ! +property_value: IAO:0000589 "columnar/cuboidal epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000075 ! columnar/cuboidal epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009112 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000184 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009268 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000582 ! +property_value: IAO:0000589 "neutrophilic metamyelocyte (zebrafish)" xsd:string +intersection_of: CL:0000582 ! neutrophilic metamyelocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009025 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000056 ! +property_value: IAO:0000589 "myoblast (zebrafish)" xsd:string +intersection_of: CL:0000056 ! myoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009089 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000146 ! +property_value: IAO:0000589 "simple columnar epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000146 ! simple columnar epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001691 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0001031 ! +property_value: IAO:0000589 "cerebellar granule cell (zebrafish)" xsd:string +intersection_of: CL:0001031 ! cerebellar granule cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009349 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000826 ! +property_value: IAO:0000589 "pro-B cell (zebrafish)" xsd:string +intersection_of: CL:0000826 ! pro-B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009344 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000817 ! +property_value: IAO:0000589 "precursor B cell (zebrafish)" xsd:string +intersection_of: CL:0000817 ! precursor B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009390 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:1000500 ! +property_value: IAO:0000589 "kidney interstitial cell (zebrafish)" xsd:string +intersection_of: CL:1000500 ! kidney interstitial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009072 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000122 ! +property_value: IAO:0000589 "stellate cell (zebrafish)" xsd:string +intersection_of: CL:0000122 ! stellate cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001109 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000023 ! +property_value: IAO:0000589 "oocyte (zebrafish)" xsd:string +intersection_of: CL:0000023 ! oocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009130 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000213 ! +property_value: IAO:0000589 "lining cell (zebrafish)" xsd:string +intersection_of: CL:0000213 ! lining cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0005242 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005012 ! +property_value: IAO:0000589 "multi-ciliated epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0005012 ! multi-ciliated epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009377 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0005012 ! +property_value: IAO:0000589 "multi-ciliated epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0005012 ! multi-ciliated epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009034 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000066 ! +property_value: IAO:0000589 "epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009360 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000849 ! +property_value: IAO:0000589 "crypt olfactory receptor neuron (zebrafish)" xsd:string +intersection_of: CL:0000849 ! crypt olfactory receptor neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009361 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000850 ! +property_value: IAO:0000589 "serotonergic neuron (zebrafish)" xsd:string +intersection_of: CL:0000850 ! serotonergic neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009084 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000138 ! +property_value: IAO:0000589 "chondrocyte (zebrafish)" xsd:string +intersection_of: CL:0000138 ! chondrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009136 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000219 ! +property_value: IAO:0000589 "motile cell (zebrafish)" xsd:string +intersection_of: CL:0000219 ! motile cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009092 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000152 ! +property_value: IAO:0000589 "exocrine cell (zebrafish)" xsd:string +intersection_of: CL:0000152 ! exocrine cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009030 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000061 ! +property_value: IAO:0000589 "cementoblast (zebrafish)" xsd:string +intersection_of: CL:0000061 ! cementoblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009366 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000855 ! +property_value: IAO:0000589 "sensory hair cell (zebrafish)" xsd:string +intersection_of: CL:0000855 ! sensory hair cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009046 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string intersection_of: CL:0000812 ! intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009003 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000008 ! +property_value: IAO:0000589 "migratory cranial neural crest cell (zebrafish)" xsd:string +intersection_of: CL:0000008 ! migratory cranial neural crest cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009112 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000669 ! +property_value: IAO:0000589 "pericyte cell (zebrafish)" xsd:string +intersection_of: CL:0000669 ! pericyte cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009282 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000644 ! +property_value: IAO:0000589 "Bergmann glial cell (zebrafish)" xsd:string +intersection_of: CL:0000644 ! Bergmann glial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009188 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000384 ! +property_value: IAO:0000589 "ligament cell (zebrafish)" xsd:string +intersection_of: CL:0000384 ! ligament cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009018 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000042 ! +property_value: IAO:0000589 "neutrophilic myeloblast (zebrafish)" xsd:string +intersection_of: CL:0000042 ! neutrophilic myeloblast intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009185 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000379 ! +property_value: IAO:0000589 "sensory processing neuron (zebrafish)" xsd:string +intersection_of: CL:0000379 ! sensory processing neuron intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009264 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000575 ! +property_value: IAO:0000589 "corneal epithelial cell (zebrafish)" xsd:string +intersection_of: CL:0000575 ! corneal epithelial cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009041 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000078 ! +property_value: IAO:0000589 "peridermal cell (zebrafish)" xsd:string +intersection_of: CL:0000078 ! peridermal cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009227 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000501 ! +property_value: IAO:0000589 "granulosa cell (zebrafish)" xsd:string +intersection_of: CL:0000501 ! granulosa cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009023 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000051 ! +property_value: IAO:0000589 "common lymphoid progenitor (zebrafish)" xsd:string +intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009265 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000576 ! +property_value: IAO:0000589 "monocyte (zebrafish)" xsd:string +intersection_of: CL:0000576 ! monocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009075 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000127 ! +property_value: IAO:0000589 "astrocyte (zebrafish)" xsd:string +intersection_of: CL:0000127 ! astrocyte intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009108 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000178 ! +property_value: IAO:0000589 "Leydig cell (zebrafish)" xsd:string +intersection_of: CL:0000178 ! Leydig cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009142 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000236 ! +property_value: IAO:0000589 "B cell (zebrafish)" xsd:string +intersection_of: CL:0000236 ! B cell intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0009353 ! -property_value: IAO:0000589 " (zebrafish)" xsd:string -intersection_of: CL:0000835 ! +property_value: IAO:0000589 "myeloblast (zebrafish)" xsd:string +intersection_of: CL:0000835 ! myeloblast intersection_of: part_of NCBITaxon:7954 [Term] diff --git a/bridge/cl-bridge-to-zfa.owl b/bridge/cl-bridge-to-zfa.owl index 84c6cd1351..2b6fb93aea 100644 --- a/bridge/cl-bridge-to-zfa.owl +++ b/bridge/cl-bridge-to-zfa.owl @@ -21,7 +21,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -2829,8 +2829,8 @@ - (zebrafish) ZFA:0000084 + yolk cell (zebrafish) @@ -2869,8 +2869,8 @@ - (zebrafish) ZFA:0000778 + spinal cord interneuron (zebrafish) @@ -2889,8 +2889,8 @@ - (zebrafish) ZFA:0001109 + oocyte (zebrafish) @@ -2910,8 +2910,9 @@ - (zebrafish) + CD11c-low plasmacytoid dendritic cell (zebrafish) ZFA:0001691 + cerebellar granule cell (zebrafish) @@ -2930,8 +2931,8 @@ - (zebrafish) ZFA:0001694 + olfactory granule cell (zebrafish) @@ -2950,7 +2951,6 @@ - (zebrafish) ZFA:0001725 immature Schwann cell (zebrafish) @@ -2971,8 +2971,8 @@ - (zebrafish) ZFA:0005236 + basophilic erythroblast (zebrafish) @@ -2991,8 +2991,8 @@ - (zebrafish) ZFA:0005237 + erythroblast (zebrafish) @@ -3011,8 +3011,8 @@ - (zebrafish) ZFA:0005238 + kidney granular cell (zebrafish) @@ -3031,7 +3031,7 @@ - (zebrafish) + Kolmer-Agduhr neuron (zebrafish) ZFA:0005240 @@ -3051,8 +3051,8 @@ - (zebrafish) ZFA:0005241 + polychromatophilic erythroblast (zebrafish) @@ -3071,8 +3071,8 @@ - (zebrafish) ZFA:0005242 + multi-ciliated epithelial cell (zebrafish) @@ -3091,8 +3091,8 @@ - (zebrafish) ZFA:0005243 + single ciliated epithelial cell (zebrafish) @@ -3111,8 +3111,8 @@ - (zebrafish) ZFA:0005244 + auditory epithelial support cell (zebrafish) @@ -3131,8 +3131,8 @@ - (zebrafish) ZFA:0005245 + xanthoblast (zebrafish) @@ -3151,8 +3151,8 @@ - (zebrafish) ZFA:0005322 + renal principal cell (zebrafish) @@ -3171,8 +3171,8 @@ - (zebrafish) ZFA:0005323 + ionocyte (zebrafish) @@ -3191,8 +3191,8 @@ - (zebrafish) ZFA:0005328 + iridoblast (zebrafish) @@ -3211,8 +3211,8 @@ - (zebrafish) ZFA:0005329 + leucoblast (zebrafish) @@ -3231,8 +3231,8 @@ - (zebrafish) ZFA:0005331 + pigment erythroblast (zebrafish) @@ -3251,8 +3251,8 @@ - (zebrafish) ZFA:0005332 + cyanoblast (zebrafish) @@ -3271,8 +3271,8 @@ - (zebrafish) ZFA:0005565 + tether cell (zebrafish) @@ -3291,8 +3291,8 @@ - (zebrafish) ZFA:0005598 + pancreatic epsilon cell (zebrafish) @@ -3311,8 +3311,8 @@ - (zebrafish) ZFA:0005599 + ghrelin secreting cell (zebrafish) @@ -3331,8 +3331,8 @@ - (zebrafish) ZFA:0009000 + cell (zebrafish) @@ -3351,8 +3351,8 @@ - (zebrafish) ZFA:0009001 + neuronal receptor cell (zebrafish) @@ -3371,8 +3371,8 @@ - (zebrafish) ZFA:0009002 + early embryonic cell (zebrafish) @@ -3391,8 +3391,8 @@ - (zebrafish) ZFA:0009003 + migratory cranial neural crest cell (zebrafish) @@ -3411,8 +3411,8 @@ - (zebrafish) ZFA:0009004 + migratory trunk neural crest cell (zebrafish) @@ -3431,8 +3431,8 @@ - (zebrafish) ZFA:0009005 + spermatocyte (zebrafish) @@ -3451,8 +3451,8 @@ - (zebrafish) ZFA:0009006 + sperm (zebrafish) @@ -3471,8 +3471,8 @@ - (zebrafish) ZFA:0009007 + spermatogonium (zebrafish) @@ -3491,8 +3491,8 @@ - (zebrafish) ZFA:0009009 + neuron neural crest derived (zebrafish) @@ -3511,8 +3511,8 @@ - (zebrafish) ZFA:0009010 + glioblast (zebrafish) @@ -3531,8 +3531,8 @@ - (zebrafish) ZFA:0009011 + neuroblast (zebrafish) @@ -3551,8 +3551,8 @@ - (zebrafish) ZFA:0009012 + neuroplacodal cell (zebrafish) @@ -3571,8 +3571,8 @@ - (zebrafish) ZFA:0009013 + single fate stem cell (zebrafish) @@ -3591,8 +3591,8 @@ - (zebrafish) ZFA:0009014 + hematopoietic stem cell (zebrafish) @@ -3611,8 +3611,8 @@ - (zebrafish) ZFA:0009015 + erythroid progenitor cell (zebrafish) @@ -3631,8 +3631,8 @@ - (zebrafish) ZFA:0009016 + germ line cell (zebrafish) @@ -3651,8 +3651,8 @@ - (zebrafish) ZFA:0009017 + monoblast (zebrafish) @@ -3671,8 +3671,8 @@ - (zebrafish) ZFA:0009018 + neutrophilic myeloblast (zebrafish) @@ -3691,8 +3691,8 @@ - (zebrafish) ZFA:0009019 + neuronal stem cell (zebrafish) @@ -3711,8 +3711,8 @@ - (zebrafish) ZFA:0009020 + multi fate stem cell (zebrafish) @@ -3731,8 +3731,8 @@ - (zebrafish) ZFA:0009021 + common myeloid progenitor (zebrafish) @@ -3751,8 +3751,8 @@ - (zebrafish) ZFA:0009022 + megakaryocyte-erythroid progenitor cell (zebrafish) @@ -3771,8 +3771,8 @@ - (zebrafish) ZFA:0009023 + common lymphoid progenitor (zebrafish) @@ -3791,8 +3791,8 @@ - (zebrafish) ZFA:0009024 + totipotent stem cell (zebrafish) @@ -3811,8 +3811,8 @@ - (zebrafish) ZFA:0009025 + myoblast (zebrafish) @@ -3831,8 +3831,8 @@ - (zebrafish) ZFA:0009026 + fibroblast (zebrafish) @@ -3851,8 +3851,8 @@ - (zebrafish) ZFA:0009027 + chondroblast (zebrafish) @@ -3871,8 +3871,8 @@ - (zebrafish) ZFA:0009028 + ameloblast (zebrafish) @@ -3891,8 +3891,8 @@ - (zebrafish) ZFA:0009029 + odontoblast (zebrafish) @@ -3911,8 +3911,8 @@ - (zebrafish) ZFA:0009030 + cementoblast (zebrafish) @@ -3931,8 +3931,8 @@ - (zebrafish) ZFA:0009031 + osteoblast (zebrafish) @@ -3951,8 +3951,8 @@ - (zebrafish) ZFA:0009032 + ciliated cell (zebrafish) @@ -3971,8 +3971,8 @@ - (zebrafish) ZFA:0009033 + ependymal cell (zebrafish) @@ -3991,8 +3991,8 @@ - (zebrafish) ZFA:0009034 + epithelial cell (zebrafish) @@ -4011,8 +4011,8 @@ - (zebrafish) ZFA:0009035 + ciliated epithelial cell (zebrafish) @@ -4031,8 +4031,8 @@ - (zebrafish) ZFA:0009036 + blood vessel endothelial cell (zebrafish) @@ -4051,8 +4051,8 @@ - (zebrafish) ZFA:0009037 + barrier epithelial cell (zebrafish) @@ -4071,8 +4071,8 @@ - (zebrafish) ZFA:0009038 + columnar/cuboidal epithelial cell (zebrafish) @@ -4091,8 +4091,8 @@ - (zebrafish) ZFA:0009039 + squamous epithelial cell (zebrafish) @@ -4111,8 +4111,8 @@ - (zebrafish) ZFA:0009040 + mesothelial cell (zebrafish) @@ -4131,8 +4131,8 @@ - (zebrafish) ZFA:0009041 + peridermal cell (zebrafish) @@ -4151,8 +4151,8 @@ - (zebrafish) ZFA:0009042 + stratified epithelial cell (zebrafish) @@ -4171,8 +4171,8 @@ - (zebrafish) ZFA:0009043 + circulating cell (zebrafish) @@ -4191,8 +4191,8 @@ - (zebrafish) ZFA:0009044 + blood cell (zebrafish) @@ -4211,8 +4211,8 @@ - (zebrafish) ZFA:0009045 + epithelial cell of pancreas (zebrafish) @@ -4233,7 +4233,7 @@ - (zebrafish) + T cell (zebrafish) ZFA:0009046 @@ -4253,8 +4253,8 @@ - (zebrafish) ZFA:0009047 + osteoclast (zebrafish) @@ -4273,8 +4273,8 @@ - (zebrafish) ZFA:0009048 + granulocyte (zebrafish) @@ -4293,8 +4293,8 @@ - (zebrafish) ZFA:0009049 + mature neutrophil (zebrafish) @@ -4313,8 +4313,8 @@ - (zebrafish) ZFA:0009050 + sensory epithelial cell (zebrafish) @@ -4333,8 +4333,8 @@ - (zebrafish) ZFA:0009051 + interneuron (zebrafish) @@ -4353,8 +4353,8 @@ - (zebrafish) ZFA:0009052 + motor neuron (zebrafish) @@ -4373,8 +4373,8 @@ - (zebrafish) ZFA:0009053 + sensory neuron (zebrafish) @@ -4393,8 +4393,8 @@ - (zebrafish) ZFA:0009054 + polymodal neuron (zebrafish) @@ -4413,8 +4413,8 @@ - (zebrafish) ZFA:0009055 + bipolar neuron (zebrafish) @@ -4433,8 +4433,8 @@ - (zebrafish) ZFA:0009056 + multipolar neuron (zebrafish) @@ -4453,8 +4453,8 @@ - (zebrafish) ZFA:0009057 + pseudounipolar neuron (zebrafish) @@ -4473,8 +4473,8 @@ - (zebrafish) ZFA:0009058 + unipolar neuron (zebrafish) @@ -4493,8 +4493,8 @@ - (zebrafish) ZFA:0009059 + autonomic neuron (zebrafish) @@ -4513,8 +4513,8 @@ - (zebrafish) ZFA:0009060 + cholinergic neuron (zebrafish) @@ -4533,8 +4533,8 @@ - (zebrafish) ZFA:0009061 + adrenergic neuron (zebrafish) @@ -4553,8 +4553,8 @@ - (zebrafish) ZFA:0009062 + peptidergic neuron (zebrafish) @@ -4573,8 +4573,8 @@ - (zebrafish) ZFA:0009063 + peripheral neuron (zebrafish) @@ -4593,8 +4593,8 @@ - (zebrafish) ZFA:0009064 + mononuclear phagocyte (zebrafish) @@ -4613,8 +4613,8 @@ - (zebrafish) ZFA:0009065 + endothelial cell (zebrafish) @@ -4633,8 +4633,8 @@ - (zebrafish) ZFA:0009066 + pioneer neuron (zebrafish) @@ -4653,7 +4653,7 @@ - (zebrafish) + CNS neuron (sensu Vertebrata) (zebrafish) ZFA:0009067 @@ -4673,8 +4673,8 @@ - (zebrafish) ZFA:0009068 + basket cell (zebrafish) @@ -4693,7 +4693,7 @@ - (zebrafish) + Golgi cell (zebrafish) ZFA:0009069 @@ -4713,8 +4713,8 @@ - (zebrafish) ZFA:0009070 + granule cell (zebrafish) @@ -4733,7 +4733,7 @@ - (zebrafish) + Purkinje cell (zebrafish) ZFA:0009071 @@ -4753,8 +4753,8 @@ - (zebrafish) ZFA:0009072 + stellate cell (zebrafish) @@ -4773,8 +4773,8 @@ - (zebrafish) ZFA:0009073 + glial cell (zebrafish) @@ -4793,8 +4793,8 @@ - (zebrafish) ZFA:0009074 + macroglial cell (zebrafish) @@ -4813,8 +4813,8 @@ - (zebrafish) ZFA:0009075 + astrocyte (zebrafish) @@ -4833,8 +4833,8 @@ - (zebrafish) ZFA:0009076 + oligodendrocyte (zebrafish) @@ -4853,8 +4853,8 @@ - (zebrafish) ZFA:0009077 + microglial cell (zebrafish) @@ -4873,8 +4873,8 @@ - (zebrafish) ZFA:0009078 + gut endothelial cell (zebrafish) @@ -4893,8 +4893,8 @@ - (zebrafish) ZFA:0009079 + corneal endothelial cell (zebrafish) @@ -4913,8 +4913,8 @@ - (zebrafish) ZFA:0009080 + neurectodermal cell (zebrafish) @@ -4933,8 +4933,8 @@ - (zebrafish) ZFA:0009081 + mesenchymal cell (zebrafish) @@ -4954,8 +4954,8 @@ - (zebrafish) ZFA:0009082 + fat cell (zebrafish) @@ -4974,8 +4974,8 @@ - (zebrafish) ZFA:0009083 + osteocyte (zebrafish) @@ -4994,8 +4994,8 @@ - (zebrafish) ZFA:0009084 + chondrocyte (zebrafish) @@ -5014,7 +5014,6 @@ - (zebrafish) ZFA:0009085 @@ -5034,8 +5033,8 @@ - (zebrafish) ZFA:0009086 + odontocyte (zebrafish) @@ -5054,8 +5053,8 @@ - (zebrafish) ZFA:0009087 + cementocyte (zebrafish) @@ -5074,8 +5073,8 @@ - (zebrafish) ZFA:0009088 + professional antigen presenting cell (zebrafish) @@ -5094,8 +5093,8 @@ - (zebrafish) ZFA:0009089 + simple columnar epithelial cell (zebrafish) @@ -5114,8 +5113,8 @@ - (zebrafish) ZFA:0009090 + pigment cell (zebrafish) @@ -5134,8 +5133,8 @@ - (zebrafish) ZFA:0009091 + melanocyte (zebrafish) @@ -5154,8 +5153,8 @@ - (zebrafish) ZFA:0009092 + exocrine cell (zebrafish) @@ -5174,7 +5173,7 @@ - (zebrafish) + GAG secreting cell (zebrafish) ZFA:0009093 @@ -5194,8 +5193,8 @@ - (zebrafish) ZFA:0009094 + goblet cell (zebrafish) @@ -5214,8 +5213,8 @@ - (zebrafish) ZFA:0009095 + acid secreting cell (zebrafish) @@ -5234,8 +5233,8 @@ - (zebrafish) ZFA:0009096 + endocrine cell (zebrafish) @@ -5254,8 +5253,8 @@ - (zebrafish) ZFA:0009097 + enteroendocrine cell (zebrafish) @@ -5274,8 +5273,8 @@ - (zebrafish) ZFA:0009098 + neuroendocrine cell (zebrafish) @@ -5294,8 +5293,8 @@ - (zebrafish) ZFA:0009099 + chromaffin cell (zebrafish) @@ -5314,8 +5313,8 @@ - (zebrafish) ZFA:0009100 + peptide hormone secreting cell (zebrafish) @@ -5334,8 +5333,8 @@ - (zebrafish) ZFA:0009101 + insulin secreting cell (zebrafish) @@ -5354,8 +5353,8 @@ - (zebrafish) ZFA:0009102 + type B pancreatic cell (zebrafish) @@ -5374,8 +5373,8 @@ - (zebrafish) ZFA:0009103 + glucagon secreting cell (zebrafish) @@ -5394,8 +5393,8 @@ - (zebrafish) ZFA:0009104 + pancreatic A cell (zebrafish) @@ -5414,8 +5413,8 @@ - (zebrafish) ZFA:0009105 + somatostatin secreting cell (zebrafish) @@ -5434,8 +5433,8 @@ - (zebrafish) ZFA:0009106 + steroid hormone secreting cell (zebrafish) @@ -5454,8 +5453,8 @@ - (zebrafish) ZFA:0009107 + testosterone secreting cell (zebrafish) @@ -5474,7 +5473,7 @@ - (zebrafish) + Leydig cell (zebrafish) ZFA:0009108 @@ -5494,8 +5493,8 @@ - (zebrafish) ZFA:0009109 + progesterone secreting cell (zebrafish) @@ -5514,8 +5513,8 @@ - (zebrafish) ZFA:0009110 + estradiol secreting cell (zebrafish) @@ -5534,8 +5533,8 @@ - (zebrafish) ZFA:0009111 + hepatocyte (zebrafish) @@ -5555,8 +5554,8 @@ - (zebrafish) ZFA:0009112 + pericyte cell (zebrafish) @@ -5575,8 +5574,8 @@ - (zebrafish) ZFA:0009113 + myoepithelial cell (zebrafish) @@ -5595,8 +5594,8 @@ - (zebrafish) ZFA:0009114 + muscle cell (zebrafish) @@ -5615,8 +5614,8 @@ - (zebrafish) ZFA:0009115 + skeletal muscle cell (zebrafish) @@ -5635,8 +5634,8 @@ - (zebrafish) ZFA:0009116 + slow muscle cell (zebrafish) @@ -5655,8 +5654,8 @@ - (zebrafish) ZFA:0009117 + fast muscle cell (zebrafish) @@ -5675,8 +5674,8 @@ - (zebrafish) ZFA:0009118 + smooth muscle cell (zebrafish) @@ -5695,8 +5694,8 @@ - (zebrafish) ZFA:0009119 + pain receptor cell (zebrafish) @@ -5715,8 +5714,8 @@ - (zebrafish) ZFA:0009120 + mechanoreceptor cell (zebrafish) @@ -5736,8 +5735,8 @@ - (zebrafish) ZFA:0009121 + auditory hair cell (zebrafish) @@ -5756,8 +5755,8 @@ - (zebrafish) ZFA:0009123 + thermoreceptor cell (zebrafish) @@ -5776,8 +5775,8 @@ - (zebrafish) ZFA:0009124 + chemoreceptor cell (zebrafish) @@ -5796,8 +5795,8 @@ - (zebrafish) ZFA:0009125 + olfactory receptor cell (zebrafish) @@ -5816,8 +5815,8 @@ - (zebrafish) ZFA:0009126 + taste receptor cell (zebrafish) @@ -5836,8 +5835,8 @@ - (zebrafish) ZFA:0009127 + photoreceptor cell (zebrafish) @@ -5856,8 +5855,8 @@ - (zebrafish) ZFA:0009128 + electrically active cell (zebrafish) @@ -5876,8 +5875,8 @@ - (zebrafish) ZFA:0009129 + absorptive cell (zebrafish) @@ -5896,8 +5895,8 @@ - (zebrafish) ZFA:0009130 + lining cell (zebrafish) @@ -5916,8 +5915,8 @@ - (zebrafish) ZFA:0009131 + synovial cell (zebrafish) @@ -5936,8 +5935,8 @@ - (zebrafish) ZFA:0009132 + barrier cell (zebrafish) @@ -5956,7 +5955,7 @@ - (zebrafish) + Sertoli cell (zebrafish) ZFA:0009133 @@ -5976,8 +5975,8 @@ - (zebrafish) ZFA:0009134 + insulating cell (zebrafish) @@ -5996,8 +5995,8 @@ - (zebrafish) ZFA:0009135 + myelinating Schwann cell (zebrafish) @@ -6016,8 +6015,8 @@ - (zebrafish) ZFA:0009136 + motile cell (zebrafish) @@ -6036,8 +6035,8 @@ - (zebrafish) ZFA:0009137 + ectodermal cell (zebrafish) @@ -6056,8 +6055,8 @@ - (zebrafish) ZFA:0009138 + mesodermal cell (zebrafish) @@ -6076,8 +6075,8 @@ - (zebrafish) ZFA:0009139 + endodermal cell (zebrafish) @@ -6096,8 +6095,8 @@ - (zebrafish) ZFA:0009140 + phagocyte (zebrafish) @@ -6116,8 +6115,8 @@ - (zebrafish) ZFA:0009141 + macrophage (zebrafish) @@ -6136,7 +6135,7 @@ - (zebrafish) + B cell (zebrafish) ZFA:0009142 @@ -6156,8 +6155,8 @@ - (zebrafish) ZFA:0009143 + brush border epithelial cell (zebrafish) @@ -6176,8 +6175,8 @@ - (zebrafish) ZFA:0009144 + stratified squamous epithelial cell (zebrafish) @@ -6196,8 +6195,8 @@ - (zebrafish) ZFA:0009145 + stratified cuboidal epithelial cell (zebrafish) @@ -6216,7 +6215,7 @@ - (zebrafish) + Merkel cell (zebrafish) ZFA:0009146 @@ -6236,8 +6235,8 @@ - (zebrafish) ZFA:0009147 + glial cell (sensu Vertebrata) (zebrafish) @@ -6256,8 +6255,8 @@ - (zebrafish) ZFA:0009148 + transitional epithelial cell (zebrafish) @@ -6276,7 +6275,7 @@ - (zebrafish) + Mauthner neuron (zebrafish) ZFA:0009149 @@ -6296,7 +6295,7 @@ - (zebrafish) + Rohon-Beard neuron (zebrafish) ZFA:0009150 @@ -6316,8 +6315,8 @@ - (zebrafish) ZFA:0009151 + hatching gland cell (zebrafish) @@ -6336,8 +6335,8 @@ - (zebrafish) ZFA:0009152 + extramedullary cell (zebrafish) @@ -6356,8 +6355,8 @@ - (zebrafish) ZFA:0009153 + eurydendroid cell (zebrafish) @@ -6376,8 +6375,8 @@ - (zebrafish) ZFA:0009154 + eye photoreceptor cell (zebrafish) @@ -6396,8 +6395,8 @@ - (zebrafish) ZFA:0009155 + somatotropin secreting cell (zebrafish) @@ -6416,8 +6415,8 @@ - (zebrafish) ZFA:0009156 + gamete (zebrafish) @@ -6436,8 +6435,8 @@ - (zebrafish) ZFA:0009157 + keratin accumulating cell (zebrafish) @@ -6456,8 +6455,8 @@ - (zebrafish) ZFA:0009158 + keratinocyte (zebrafish) @@ -6476,8 +6475,8 @@ - (zebrafish) ZFA:0009159 + mucus secreting cell (zebrafish) @@ -6496,8 +6495,8 @@ - (zebrafish) ZFA:0009160 + seminal fluid secreting cell (zebrafish) @@ -6516,8 +6515,8 @@ - (zebrafish) ZFA:0009161 + metanephric mesenchyme stem cell (zebrafish) @@ -6536,8 +6535,8 @@ - (zebrafish) ZFA:0009162 + extracellular matrix secreting cell (zebrafish) @@ -6556,8 +6555,8 @@ - (zebrafish) ZFA:0009163 + myelin accumulating cell (zebrafish) @@ -6576,8 +6575,8 @@ - (zebrafish) ZFA:0009164 + oxygen accumulating cell (zebrafish) @@ -6596,8 +6595,8 @@ - (zebrafish) ZFA:0009165 + migratory neural crest cell (zebrafish) @@ -6616,8 +6615,8 @@ - (zebrafish) ZFA:0009166 + mesenchyme condensation cell (zebrafish) @@ -6636,8 +6635,8 @@ - (zebrafish) ZFA:0009167 + adrenal medulla chromaffin cell (zebrafish) @@ -6656,8 +6655,8 @@ - (zebrafish) ZFA:0009168 + neuroblast (sensu Vertebrata) (zebrafish) @@ -6676,8 +6675,8 @@ - (zebrafish) ZFA:0009169 + glioblast (sensu Vertebrata) (zebrafish) @@ -6696,8 +6695,8 @@ - (zebrafish) ZFA:0009170 + pigment cell (sensu Vertebrata) (zebrafish) @@ -6716,8 +6715,8 @@ - (zebrafish) ZFA:0009171 + visual pigment cell (sensu Vertebrata) (zebrafish) @@ -6736,8 +6735,8 @@ - (zebrafish) ZFA:0009172 + obsolete non-visual cell (sensu Vertebrata) (zebrafish) @@ -6756,8 +6755,8 @@ - (zebrafish) ZFA:0009173 + dental papilla cell (zebrafish) @@ -6776,8 +6775,8 @@ - (zebrafish) ZFA:0009174 + scleral cell (zebrafish) @@ -6796,8 +6795,8 @@ - (zebrafish) ZFA:0009175 + choroidal cell of the eye (zebrafish) @@ -6816,8 +6815,8 @@ - (zebrafish) ZFA:0009176 + extraembryonic cell (zebrafish) @@ -6836,8 +6835,8 @@ - (zebrafish) ZFA:0009177 + blastoderm cell (zebrafish) @@ -6856,8 +6855,8 @@ - (zebrafish) ZFA:0009178 + blastemal cell (zebrafish) @@ -6876,8 +6875,8 @@ - (zebrafish) ZFA:0009179 + skeletal muscle stem cell (zebrafish) @@ -6896,8 +6895,8 @@ - (zebrafish) ZFA:0009180 + stratified epithelial stem cell (zebrafish) @@ -6916,8 +6915,8 @@ - (zebrafish) ZFA:0009181 + vascular associated smooth muscle cell (zebrafish) @@ -6936,8 +6935,8 @@ - (zebrafish) ZFA:0009182 + gastrula cell (zebrafish) @@ -6956,8 +6955,8 @@ - (zebrafish) ZFA:0009183 + epidermal cell (zebrafish) @@ -6976,8 +6975,8 @@ - (zebrafish) ZFA:0009184 + obsolete osteoprogenitor cell (zebrafish) @@ -6996,8 +6995,8 @@ - (zebrafish) ZFA:0009185 + sensory processing neuron (zebrafish) @@ -7016,8 +7015,8 @@ - (zebrafish) ZFA:0009186 + neurosecretory neuron (zebrafish) @@ -7036,8 +7035,8 @@ - (zebrafish) ZFA:0009187 + nephrogenic mesenchyme stem cell (zebrafish) @@ -7056,8 +7055,8 @@ - (zebrafish) ZFA:0009188 + ligament cell (zebrafish) @@ -7076,8 +7075,8 @@ - (zebrafish) ZFA:0009189 + tendon cell (zebrafish) @@ -7096,8 +7095,8 @@ - (zebrafish) ZFA:0009190 + electrically responsive cell (zebrafish) @@ -7116,7 +7115,7 @@ - (zebrafish) + CNS interneuron (zebrafish) ZFA:0009191 @@ -7136,8 +7135,8 @@ - (zebrafish) ZFA:0009193 + electrically signaling cell (zebrafish) @@ -7156,7 +7155,7 @@ - (zebrafish) + CNS short range interneuron (zebrafish) ZFA:0009194 @@ -7176,7 +7175,7 @@ - (zebrafish) + CNS long range interneuron (zebrafish) ZFA:0009195 @@ -7196,8 +7195,8 @@ - (zebrafish) ZFA:0009196 + flatworm hypodermal cell (zebrafish) @@ -7216,8 +7215,8 @@ - (zebrafish) ZFA:0009198 + xanthophore (zebrafish) @@ -7236,8 +7235,8 @@ - (zebrafish) ZFA:0009199 + iridophore (zebrafish) @@ -7256,8 +7255,8 @@ - (zebrafish) ZFA:0009200 + reticular cell (zebrafish) @@ -7276,8 +7275,8 @@ - (zebrafish) ZFA:0009201 + alkali secreting cell (zebrafish) @@ -7296,8 +7295,8 @@ - (zebrafish) ZFA:0009202 + gonadtroph (zebrafish) @@ -7316,8 +7315,8 @@ - (zebrafish) ZFA:0009203 + luteinizing hormone secreting cell (zebrafish) @@ -7336,8 +7335,8 @@ - (zebrafish) ZFA:0009204 + prolactin secreting cell (zebrafish) @@ -7356,8 +7355,8 @@ - (zebrafish) ZFA:0009205 + melanocyte stimulating hormone secreting cell (zebrafish) @@ -7376,8 +7375,8 @@ - (zebrafish) ZFA:0009206 + calcitonin secreting cell (zebrafish) @@ -7396,8 +7395,8 @@ - (zebrafish) ZFA:0009207 + chief cell of parathyroid gland (zebrafish) @@ -7416,8 +7415,8 @@ - (zebrafish) ZFA:0009209 + dendritic cell (zebrafish) @@ -7436,8 +7435,8 @@ - (zebrafish) ZFA:0009210 + thyroid hormone secreting cell (zebrafish) @@ -7456,8 +7455,8 @@ - (zebrafish) ZFA:0009211 + epinephrine secreting cell (zebrafish) @@ -7476,8 +7475,8 @@ - (zebrafish) ZFA:0009212 + biogenic amine secreting cell (zebrafish) @@ -7496,8 +7495,8 @@ - (zebrafish) ZFA:0009213 + serotonin secreting cell (zebrafish) @@ -7516,8 +7515,8 @@ - (zebrafish) ZFA:0009214 + norepinephrin secreting cell (zebrafish) @@ -7536,8 +7535,8 @@ - (zebrafish) ZFA:0009215 + glucocorticoid secreting cell (zebrafish) @@ -7556,8 +7555,8 @@ - (zebrafish) ZFA:0009216 + adrenocorticotropic hormone secreting cell (zebrafish) @@ -7576,8 +7575,8 @@ - (zebrafish) ZFA:0009217 + digestive enzyme secreting cell (zebrafish) @@ -7596,8 +7595,8 @@ - (zebrafish) ZFA:0009218 + thyrotroph (zebrafish) @@ -7616,8 +7615,8 @@ - (zebrafish) ZFA:0009219 + visible light photoreceptor cell (zebrafish) @@ -7636,8 +7635,8 @@ - (zebrafish) ZFA:0009220 + photopic photoreceptor cell (zebrafish) @@ -7656,7 +7655,7 @@ - (zebrafish) + UV sensitive photoreceptor cell (zebrafish) ZFA:0009221 @@ -7676,8 +7675,8 @@ - (zebrafish) ZFA:0009222 + blue sensitive photoreceptor cell (zebrafish) @@ -7696,8 +7695,8 @@ - (zebrafish) ZFA:0009223 + green sensitive photoreceptor cell (zebrafish) @@ -7716,8 +7715,8 @@ - (zebrafish) ZFA:0009224 + red sensitive photoreceptor cell (zebrafish) @@ -7736,8 +7735,8 @@ - (zebrafish) ZFA:0009225 + inhibitory interneuron (zebrafish) @@ -7756,8 +7755,8 @@ - (zebrafish) ZFA:0009226 + stromal cell (zebrafish) @@ -7776,8 +7775,8 @@ - (zebrafish) ZFA:0009227 + granulosa cell (zebrafish) @@ -7796,8 +7795,8 @@ - (zebrafish) ZFA:0009228 + type D enteroendocrine cell (zebrafish) @@ -7816,8 +7815,8 @@ - (zebrafish) ZFA:0009229 + theca cell (zebrafish) @@ -7836,8 +7835,8 @@ - (zebrafish) ZFA:0009230 + substance P secreting cell (zebrafish) @@ -7856,8 +7855,8 @@ - (zebrafish) ZFA:0009231 + enkephalin secreting cell (zebrafish) @@ -7876,8 +7875,8 @@ - (zebrafish) ZFA:0009232 + endorphin secreting cell (zebrafish) @@ -7896,8 +7895,8 @@ - (zebrafish) ZFA:0009233 + paracrine cell (zebrafish) @@ -7916,8 +7915,8 @@ - (zebrafish) ZFA:0009234 + cardiac muscle myoblast (zebrafish) @@ -7936,8 +7935,8 @@ - (zebrafish) ZFA:0009235 + smooth muscle myoblast (zebrafish) @@ -7956,8 +7955,8 @@ - (zebrafish) ZFA:0009236 + skeletal muscle myoblast (zebrafish) @@ -7976,8 +7975,8 @@ - (zebrafish) ZFA:0009237 + perineuronal satellite cell (zebrafish) @@ -7996,8 +7995,8 @@ - (zebrafish) ZFA:0009238 + afferent neuron (zebrafish) @@ -8016,8 +8015,8 @@ - (zebrafish) ZFA:0009239 + efferent neuron (zebrafish) @@ -8036,8 +8035,8 @@ - (zebrafish) ZFA:0009240 + nitrergic neuron (zebrafish) @@ -8056,8 +8055,8 @@ - (zebrafish) ZFA:0009241 + pigmented epithelial cell (zebrafish) @@ -8076,8 +8075,8 @@ - (zebrafish) ZFA:0009242 + primary neuron (zebrafish) @@ -8096,7 +8095,7 @@ - (zebrafish) + CAP motoneuron (zebrafish) ZFA:0009243 @@ -8116,8 +8115,8 @@ - (zebrafish) ZFA:0009244 + primary motor neuron (zebrafish) @@ -8136,8 +8135,8 @@ - (zebrafish) ZFA:0009245 + primary interneuron (zebrafish) @@ -8156,8 +8155,8 @@ - (zebrafish) ZFA:0009246 + secondary neuron (zebrafish) @@ -8176,8 +8175,8 @@ - (zebrafish) ZFA:0009247 + secondary motor neuron (zebrafish) @@ -8196,8 +8195,8 @@ - (zebrafish) ZFA:0009248 + neuron (zebrafish) @@ -8216,8 +8215,8 @@ - (zebrafish) ZFA:0009249 + melanoblast (zebrafish) @@ -8236,8 +8235,8 @@ - (zebrafish) ZFA:0009250 + lymphocyte (zebrafish) @@ -8256,8 +8255,8 @@ - (zebrafish) ZFA:0009251 + granulocyte monocyte progenitor cell (zebrafish) @@ -8276,8 +8275,8 @@ - (zebrafish) ZFA:0009252 + reticulocyte (zebrafish) @@ -8296,8 +8295,8 @@ - (zebrafish) ZFA:0009253 + promonocyte (zebrafish) @@ -8316,8 +8315,8 @@ - (zebrafish) ZFA:0009254 + band form neutrophil (zebrafish) @@ -8336,8 +8335,8 @@ - (zebrafish) ZFA:0009255 + amacrine cell (zebrafish) @@ -8356,8 +8355,8 @@ - (zebrafish) ZFA:0009256 + nucleate erythrocyte (zebrafish) @@ -8376,8 +8375,8 @@ - (zebrafish) ZFA:0009257 + neutrophilic promyelocyte (zebrafish) @@ -8396,8 +8395,8 @@ - (zebrafish) ZFA:0009258 + angioblastic mesenchymal cell (zebrafish) @@ -8416,8 +8415,8 @@ - (zebrafish) ZFA:0009259 + cardiac mesenchymal cell (zebrafish) @@ -8436,8 +8435,8 @@ - (zebrafish) ZFA:0009260 + parafollicular cell (zebrafish) @@ -8456,8 +8455,8 @@ - (zebrafish) ZFA:0009261 + leucophore (zebrafish) @@ -8476,8 +8475,8 @@ - (zebrafish) ZFA:0009262 + retinal cone cell (zebrafish) @@ -8496,8 +8495,8 @@ - (zebrafish) ZFA:0009263 + erythrophore (zebrafish) @@ -8516,8 +8515,8 @@ - (zebrafish) ZFA:0009264 + corneal epithelial cell (zebrafish) @@ -8536,8 +8535,8 @@ - (zebrafish) ZFA:0009265 + monocyte (zebrafish) @@ -8556,8 +8555,8 @@ - (zebrafish) ZFA:0009266 + neutrophilic myelocyte (zebrafish) @@ -8576,8 +8575,8 @@ - (zebrafish) ZFA:0009267 + peritoneal macrophage (zebrafish) @@ -8596,8 +8595,8 @@ - (zebrafish) ZFA:0009268 + neutrophilic metamyelocyte (zebrafish) @@ -8616,8 +8615,8 @@ - (zebrafish) ZFA:0009269 + enterocyte (zebrafish) @@ -8636,8 +8635,8 @@ - (zebrafish) ZFA:0009270 + odontoclast (zebrafish) @@ -8656,8 +8655,8 @@ - (zebrafish) ZFA:0009271 + androgen secreting cell (zebrafish) @@ -8676,8 +8675,8 @@ - (zebrafish) ZFA:0009272 + skeletal muscle satellite cell (zebrafish) @@ -8696,8 +8695,8 @@ - (zebrafish) ZFA:0009273 + pyramidal cell (zebrafish) @@ -8716,8 +8715,8 @@ - (zebrafish) ZFA:0009274 + pressoreceptor cell (zebrafish) @@ -8736,8 +8735,8 @@ - (zebrafish) ZFA:0009275 + retinal rod cell (zebrafish) @@ -8756,7 +8755,7 @@ - (zebrafish) + GABAergic neuron (zebrafish) ZFA:0009276 @@ -8776,8 +8775,8 @@ - (zebrafish) ZFA:0009277 + acinar cell (zebrafish) @@ -8796,8 +8795,8 @@ - (zebrafish) ZFA:0009278 + natural killer cell (zebrafish) @@ -8816,8 +8815,8 @@ - (zebrafish) ZFA:0009279 + hepatic stellate cell (zebrafish) @@ -8836,7 +8835,7 @@ - (zebrafish) + Mueller cell (zebrafish) ZFA:0009280 @@ -8856,8 +8855,8 @@ - (zebrafish) ZFA:0009281 + folliculostellate cell (zebrafish) @@ -8876,7 +8875,7 @@ - (zebrafish) + Bergmann glial cell (zebrafish) ZFA:0009282 @@ -8896,8 +8895,8 @@ - (zebrafish) ZFA:0009283 + mesangial cell (zebrafish) @@ -8916,8 +8915,8 @@ - (zebrafish) ZFA:0009284 + pinealocyte (zebrafish) @@ -8936,8 +8935,8 @@ - (zebrafish) ZFA:0009285 + glomerular visceral epithelial cell (zebrafish) @@ -8956,8 +8955,8 @@ - (zebrafish) ZFA:0009286 + fenestrated cell (zebrafish) @@ -8976,8 +8975,8 @@ - (zebrafish) ZFA:0009287 + collagen secreting cell (zebrafish) @@ -8996,8 +8995,8 @@ - (zebrafish) ZFA:0009288 + primordial germ cell (zebrafish) @@ -9016,8 +9015,8 @@ - (zebrafish) ZFA:0009289 + gut absorptive cell (zebrafish) @@ -9036,8 +9035,8 @@ - (zebrafish) ZFA:0009290 + glutamatergic neuron (zebrafish) @@ -9056,8 +9055,8 @@ - (zebrafish) ZFA:0009291 + muscle precursor cell (zebrafish) @@ -9076,8 +9075,8 @@ - (zebrafish) ZFA:0009292 + radial glial cell (zebrafish) @@ -9096,7 +9095,7 @@ - (zebrafish) + M cell of gut (zebrafish) ZFA:0009293 @@ -9116,8 +9115,8 @@ - (zebrafish) ZFA:0009294 + ependymoglial cell (zebrafish) @@ -9136,8 +9135,8 @@ - (zebrafish) ZFA:0009295 + cerebrospinal fluid secreting cell (zebrafish) @@ -9156,8 +9155,8 @@ - (zebrafish) ZFA:0009296 + perijunctional fibroblast (zebrafish) @@ -9176,8 +9175,8 @@ - (zebrafish) ZFA:0009297 + stellate interneuron (zebrafish) @@ -9196,8 +9195,8 @@ - (zebrafish) ZFA:0009298 + terminal Schwann cell (zebrafish) @@ -9216,8 +9215,8 @@ - (zebrafish) ZFA:0009299 + neuroglioform cell (zebrafish) @@ -9236,7 +9235,7 @@ - (zebrafish) + Cajal-Retzius cell (zebrafish) ZFA:0009300 @@ -9256,8 +9255,8 @@ - (zebrafish) ZFA:0009301 + dopaminergic neuron (zebrafish) @@ -9276,8 +9275,8 @@ - (zebrafish) ZFA:0009302 + sustentacular cell (zebrafish) @@ -9296,8 +9295,8 @@ - (zebrafish) ZFA:0009303 + endothelial tip cell (zebrafish) @@ -9316,8 +9315,8 @@ - (zebrafish) ZFA:0009304 + choroid plexus epithelial cell (zebrafish) @@ -9336,8 +9335,8 @@ - (zebrafish) ZFA:0009305 + leptomeningeal cell (zebrafish) @@ -9356,8 +9355,8 @@ - (zebrafish) ZFA:0009306 + neurecto-epithelial cell (zebrafish) @@ -9376,8 +9375,8 @@ - (zebrafish) ZFA:0009307 + somatic stem cell (zebrafish) @@ -9396,8 +9395,8 @@ - (zebrafish) ZFA:0009308 + urothelial cell (zebrafish) @@ -9416,8 +9415,8 @@ - (zebrafish) ZFA:0009309 + leukocyte (zebrafish) @@ -9436,8 +9435,8 @@ - (zebrafish) ZFA:0009310 + retinal ganglion cell (zebrafish) @@ -9456,8 +9455,8 @@ - (zebrafish) ZFA:0009311 + spinal accessory motor neuron (zebrafish) @@ -9476,8 +9475,8 @@ - (zebrafish) ZFA:0009312 + periarticular chondrocyte (zebrafish) @@ -9496,8 +9495,8 @@ - (zebrafish) ZFA:0009313 + hypertrophic chondrocyte (zebrafish) @@ -9516,8 +9515,8 @@ - (zebrafish) ZFA:0009314 + columnar chondrocyte (zebrafish) @@ -9536,8 +9535,8 @@ - (zebrafish) ZFA:0009315 + horizontal cell (zebrafish) @@ -9556,8 +9555,8 @@ - (zebrafish) ZFA:0009316 + cardiac muscle cell (zebrafish) @@ -9576,8 +9575,8 @@ - (zebrafish) ZFA:0009317 + cyanophore (zebrafish) @@ -9596,8 +9595,8 @@ - (zebrafish) ZFA:0009318 + retinal bipolar neuron (zebrafish) @@ -9616,7 +9615,7 @@ - (zebrafish) + ON-bipolar cell (zebrafish) ZFA:0009319 @@ -9636,7 +9635,7 @@ - (zebrafish) + OFF-bipolar cell (zebrafish) ZFA:0009320 @@ -9656,8 +9655,8 @@ - (zebrafish) ZFA:0009321 + rod bipolar cell (zebrafish) @@ -9676,8 +9675,8 @@ - (zebrafish) ZFA:0009322 + cone retinal bipolar cell (zebrafish) @@ -9696,8 +9695,8 @@ - (zebrafish) ZFA:0009323 + nucleated thrombocyte (zebrafish) @@ -9716,8 +9715,8 @@ - (zebrafish) ZFA:0009324 + myeloid cell (zebrafish) @@ -9736,8 +9735,8 @@ - (zebrafish) ZFA:0009325 + erythroid lineage cell (zebrafish) @@ -9756,8 +9755,8 @@ - (zebrafish) ZFA:0009326 + myeloid leukocyte (zebrafish) @@ -9776,8 +9775,8 @@ - (zebrafish) ZFA:0009327 + neutrophil (zebrafish) @@ -9796,8 +9795,8 @@ - (zebrafish) ZFA:0009328 + immature neutrophil (zebrafish) @@ -9816,8 +9815,8 @@ - (zebrafish) ZFA:0009329 + mononuclear osteoclast (zebrafish) @@ -9836,8 +9835,8 @@ - (zebrafish) ZFA:0009330 + mononuclear odontoclast (zebrafish) @@ -9856,8 +9855,8 @@ - (zebrafish) ZFA:0009331 + mature B cell (zebrafish) @@ -9876,8 +9875,8 @@ - (zebrafish) ZFA:0009332 + plasma cell (zebrafish) @@ -9896,8 +9895,8 @@ - (zebrafish) ZFA:0009333 + memory B cell (zebrafish) @@ -9916,8 +9915,8 @@ - (zebrafish) ZFA:0009334 + naive B cell (zebrafish) @@ -9936,8 +9935,8 @@ - (zebrafish) ZFA:0009335 + alpha-beta T cell (zebrafish) @@ -9956,8 +9955,8 @@ - (zebrafish) ZFA:0009336 + gamma-delta T cell (zebrafish) @@ -9976,8 +9975,8 @@ - (zebrafish) ZFA:0009337 + immature gamma-delta T cell (zebrafish) @@ -9996,8 +9995,8 @@ - (zebrafish) ZFA:0009338 + mature gamma-delta T cell (zebrafish) @@ -10016,8 +10015,8 @@ - (zebrafish) ZFA:0009339 + gamma-delta intraepithelial T cell (zebrafish) @@ -10036,8 +10035,8 @@ - (zebrafish) ZFA:0009342 + memory T cell (zebrafish) @@ -10056,8 +10055,8 @@ - (zebrafish) ZFA:0009343 + immature B cell (zebrafish) @@ -10076,8 +10075,8 @@ - (zebrafish) ZFA:0009344 + precursor B cell (zebrafish) @@ -10096,8 +10095,8 @@ - (zebrafish) ZFA:0009345 + transitional stage B cell (zebrafish) @@ -10116,8 +10115,8 @@ - (zebrafish) ZFA:0009346 + immature natural killer cell (zebrafish) @@ -10136,8 +10135,8 @@ - (zebrafish) ZFA:0009347 + mature natural killer cell (zebrafish) @@ -10156,8 +10155,8 @@ - (zebrafish) ZFA:0009348 + pro-NK cell (zebrafish) @@ -10176,8 +10175,8 @@ - (zebrafish) ZFA:0009349 + pro-B cell (zebrafish) @@ -10196,8 +10195,8 @@ - (zebrafish) ZFA:0009350 + pro-T cell (zebrafish) @@ -10216,8 +10215,8 @@ - (zebrafish) ZFA:0009351 + thromboblast (zebrafish) @@ -10236,8 +10235,8 @@ - (zebrafish) ZFA:0009352 + neutrophil progenitor cell (zebrafish) @@ -10256,8 +10255,8 @@ - (zebrafish) ZFA:0009353 + myeloblast (zebrafish) @@ -10276,8 +10275,8 @@ - (zebrafish) ZFA:0009354 + hematopoietic multipotent progenitor cell (zebrafish) @@ -10296,8 +10295,8 @@ - (zebrafish) ZFA:0009355 + lymphoid lineage restricted progenitor cell (zebrafish) @@ -10316,8 +10315,8 @@ - (zebrafish) ZFA:0009356 + myeloid lineage restricted progenitor cell (zebrafish) @@ -10336,8 +10335,8 @@ - (zebrafish) ZFA:0009357 + mononuclear cell (zebrafish) @@ -10356,8 +10355,8 @@ - (zebrafish) ZFA:0009358 + ciliated olfactory receptor neuron (zebrafish) @@ -10376,8 +10375,8 @@ - (zebrafish) ZFA:0009359 + microvillous olfactory receptor neuron (zebrafish) @@ -10396,8 +10395,8 @@ - (zebrafish) ZFA:0009360 + crypt olfactory receptor neuron (zebrafish) @@ -10417,8 +10416,8 @@ - (zebrafish) ZFA:0009361 + serotonergic neuron (zebrafish) @@ -10437,8 +10436,8 @@ - (zebrafish) ZFA:0009362 + neuromast mantle cell (zebrafish) @@ -10457,8 +10456,8 @@ - (zebrafish) ZFA:0009363 + neuromast support cell (zebrafish) @@ -10477,8 +10476,8 @@ - (zebrafish) ZFA:0009364 + olfactory epithelial support cell (zebrafish) @@ -10497,8 +10496,8 @@ - (zebrafish) ZFA:0009365 + interneuromast cell (zebrafish) @@ -10517,8 +10516,8 @@ - (zebrafish) ZFA:0009366 + sensory hair cell (zebrafish) @@ -10537,8 +10536,8 @@ - (zebrafish) ZFA:0009367 + neuromast hair cell (zebrafish) @@ -10557,8 +10556,8 @@ - (zebrafish) ZFA:0009368 + slow muscle myoblast (zebrafish) @@ -10577,8 +10576,8 @@ - (zebrafish) ZFA:0009369 + fast muscle myoblast (zebrafish) @@ -10597,8 +10596,8 @@ - (zebrafish) ZFA:0009370 + stretch receptor cell (zebrafish) @@ -10617,8 +10616,8 @@ - (zebrafish) ZFA:0009371 + stratified keratinized epithelial stem cell (zebrafish) @@ -10637,8 +10636,8 @@ - (zebrafish) ZFA:0009373 + renal principal cell (zebrafish) @@ -10657,8 +10656,8 @@ - (zebrafish) ZFA:0009374 + kidney epithelial cell (zebrafish) @@ -10677,8 +10676,8 @@ - (zebrafish) ZFA:0009375 + renal intercalated cell (zebrafish) @@ -10697,8 +10696,8 @@ - (zebrafish) ZFA:0009376 + renal alpha-intercalated cell (zebrafish) @@ -10717,8 +10716,8 @@ - (zebrafish) ZFA:0009377 + multi-ciliated epithelial cell (zebrafish) @@ -10737,8 +10736,8 @@ - (zebrafish) ZFA:0009378 + single ciliated epithelial cell (zebrafish) @@ -10757,8 +10756,8 @@ - (zebrafish) ZFA:0009381 + ghrelin secreting cell (zebrafish) @@ -10777,8 +10776,8 @@ - (zebrafish) ZFA:0009382 + pancreatic epsilon cell (zebrafish) @@ -10797,8 +10796,8 @@ - (zebrafish) ZFA:0009384 + neurecto-epithelial cell (zebrafish) @@ -10817,8 +10816,8 @@ - (zebrafish) ZFA:0009385 + ecto-epithelial cell (zebrafish) @@ -10837,8 +10836,8 @@ - (zebrafish) ZFA:0009386 + somatic cell (zebrafish) @@ -10857,8 +10856,8 @@ - (zebrafish) ZFA:0009387 + supportive cell (zebrafish) @@ -10877,8 +10876,8 @@ - (zebrafish) ZFA:0009388 + meso-epithelial cell (zebrafish) @@ -10897,8 +10896,8 @@ - (zebrafish) ZFA:0009389 + kidney cell (zebrafish) @@ -10917,8 +10916,8 @@ - (zebrafish) ZFA:0009390 + kidney interstitial cell (zebrafish) @@ -10937,8 +10936,8 @@ - (zebrafish) ZFA:0009391 + kidney medulla cell (zebrafish) @@ -10957,8 +10956,8 @@ - (zebrafish) ZFA:0009392 + connective tissue cell (zebrafish) @@ -10977,8 +10976,8 @@ - (zebrafish) ZFA:0009393 + lymphangioblast (zebrafish) @@ -10997,8 +10996,8 @@ - (zebrafish) ZFA:0009394 + mesenchymal lymphangioblast (zebrafish) @@ -11017,8 +11016,8 @@ - (zebrafish) ZFA:0009395 + vascular lymphangioblast (zebrafish) @@ -11037,8 +11036,8 @@ - (zebrafish) ZFA:0009396 + glycinergic neuron (zebrafish) diff --git a/bridge/uberon-bridge-to-aao.obo b/bridge/uberon-bridge-to-aao.obo index 02332f922c..53fac72a29 100644 --- a/bridge/uberon-bridge-to-aao.obo +++ b/bridge/uberon-bridge-to-aao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-aao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to aao" xsd:string property_value: dc-description "Equivalence axioms between AAO and Uberon. Note that AAO is in the process of being merged into the core Uberon, so this mapping will become deprecated" xsd:string diff --git a/bridge/uberon-bridge-to-aao.owl b/bridge/uberon-bridge-to-aao.owl index 3c5aafcf91..343ce8822b 100644 --- a/bridge/uberon-bridge-to-aao.owl +++ b/bridge/uberon-bridge-to-aao.owl @@ -21,7 +21,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-bila.obo b/bridge/uberon-bridge-to-bila.obo index a6f89fbf11..3f4a073aa5 100644 --- a/bridge/uberon-bridge-to-bila.obo +++ b/bridge/uberon-bridge-to-bila.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-bila -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-bila.owl b/bridge/uberon-bridge-to-bila.owl index c472d555b8..15141eacad 100644 --- a/bridge/uberon-bridge-to-bila.owl +++ b/bridge/uberon-bridge-to-bila.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-caro.obo b/bridge/uberon-bridge-to-caro.obo index d838d51f1b..082cbbebff 100644 --- a/bridge/uberon-bridge-to-caro.obo +++ b/bridge/uberon-bridge-to-caro.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-caro -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-caro.owl b/bridge/uberon-bridge-to-caro.owl index 4b50d58475..bd1cde03de 100644 --- a/bridge/uberon-bridge-to-caro.owl +++ b/bridge/uberon-bridge-to-caro.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-ehdaa.obo b/bridge/uberon-bridge-to-ehdaa.obo index a2e2306993..b0c45d784b 100644 --- a/bridge/uberon-bridge-to-ehdaa.obo +++ b/bridge/uberon-bridge-to-ehdaa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ehdaa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] @@ -3322,6 +3322,16 @@ id: EHDAA:900 ! property_value: IAO:0000589 "posterior neuropore (EHDAA)" xsd:string is_a: UBERON:0005071 ! posterior neuropore +[Term] +id: EHDAA:1983 ! +property_value: IAO:0000589 "lamina terminalis of neural tube (EHDAA)" xsd:string +is_a: UBERON:0005078 ! lamina terminalis of neural tube + +[Term] +id: EHDAA:2661 ! +property_value: IAO:0000589 "lamina terminalis of neural tube (EHDAA)" xsd:string +is_a: UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: EHDAA:482 ! property_value: IAO:0000589 "left horn of sinus venosus (EHDAA)" xsd:string @@ -3824,8 +3834,8 @@ is_a: UBERON:0005676 ! right lung accessory lobe endothelium [Term] id: EHDAA:9554 ! -property_value: IAO:0000589 "orbitosphenoid cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0005687 ! orbitosphenoid cartilage condensation +property_value: IAO:0000589 "orbitosphenoid cartilage element (EHDAA)" xsd:string +is_a: UBERON:0005687 ! orbitosphenoid cartilage element [Term] id: EHDAA:625 ! @@ -4029,8 +4039,8 @@ is_a: UBERON:0006208 ! auditory hillocks [Term] id: EHDAA:7141 ! -property_value: IAO:0000589 "basioccipital cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006209 ! basioccipital cartilage condensation +property_value: IAO:0000589 "basioccipital cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: EHDAA:3217 ! @@ -4049,8 +4059,8 @@ is_a: UBERON:0006212 ! bulbo-ventricular groove [Term] id: EHDAA:8544 ! -property_value: IAO:0000589 "carpus cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006213 ! carpus cartilage condensation +property_value: IAO:0000589 "carpus cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: EHDAA:6324 ! @@ -4189,8 +4199,8 @@ is_a: UBERON:0006244 ! hip joint primordium [Term] id: EHDAA:6240 ! -property_value: IAO:0000589 "humerus cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006245 ! humerus cartilage condensation +property_value: IAO:0000589 "humerus cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: EHDAA:4192 ! @@ -4224,8 +4234,8 @@ is_a: UBERON:0006253 ! embryonic intraretinal space [Term] id: EHDAA:9570 ! -property_value: IAO:0000589 "ischial cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006254 ! ischial cartilage condensation +property_value: IAO:0000589 "ischial cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006254 ! ischial cartilage element [Term] id: EHDAA:7153 ! @@ -4359,8 +4369,8 @@ is_a: UBERON:0006285 ! pubic pre-cartilage condensation [Term] id: EHDAA:7267 ! -property_value: IAO:0000589 "radius cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006286 ! radius cartilage condensation +property_value: IAO:0000589 "radius cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006286 ! radius cartilage element [Term] id: EHDAA:4178 ! @@ -4369,8 +4379,8 @@ is_a: UBERON:0006287 ! radius-ulna pre-cartilage condensation [Term] id: EHDAA:8347 ! -property_value: IAO:0000589 "rib cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006288 ! rib cartilage condensation +property_value: IAO:0000589 "rib cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006288 ! rib cartilage element [Term] id: EHDAA:6026 ! @@ -4379,8 +4389,8 @@ is_a: UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EHDAA:8368 ! -property_value: IAO:0000589 "scapula cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006290 ! scapula cartilage condensation +property_value: IAO:0000589 "scapula cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: EHDAA:6041 ! @@ -4444,8 +4454,8 @@ is_a: UBERON:0006305 ! tunica vasculosa lentis [Term] id: EHDAA:7269 ! -property_value: IAO:0000589 "ulna cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0006306 ! ulna cartilage condensation +property_value: IAO:0000589 "ulna cartilage element (EHDAA)" xsd:string +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: EHDAA:7011 ! @@ -4759,8 +4769,8 @@ is_a: UBERON:0010132 ! gastroduodenal artery [Term] id: EHDAA:4704 ! -property_value: IAO:0000589 "otic capsule cartilage condensation (EHDAA)" xsd:string -is_a: UBERON:0010351 ! otic capsule cartilage condensation +property_value: IAO:0000589 "otic capsule cartilage element (EHDAA)" xsd:string +is_a: UBERON:0010351 ! otic capsule cartilage element [Term] id: EHDAA:7007 ! @@ -4882,6 +4892,16 @@ id: EHDAA:5984 ! property_value: IAO:0000589 "skeletal muscle organ (EHDAA)" xsd:string is_a: UBERON:0014892 ! skeletal muscle organ +[Term] +id: EHDAA:3500 ! +property_value: IAO:0000589 "lamina terminalis of cerebral hemisphere (EHDAA)" xsd:string +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere + +[Term] +id: EHDAA:4498 ! +property_value: IAO:0000589 "lamina terminalis of cerebral hemisphere (EHDAA)" xsd:string +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere + [Typedef] id: http://purl.obolibrary.org/obo/ehdaa#part_of equivalent_to: BFO:0000050 diff --git a/bridge/uberon-bridge-to-ehdaa.owl b/bridge/uberon-bridge-to-ehdaa.owl index 1ae06f9f3c..0538acb0f1 100644 --- a/bridge/uberon-bridge-to-ehdaa.owl +++ b/bridge/uberon-bridge-to-ehdaa.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -1431,6 +1431,16 @@ + + + + + EHDAA:1983 + lamina terminalis of neural tube (EHDAA) + + + + @@ -1921,6 +1931,16 @@ + + + + + EHDAA:2661 + lamina terminalis of neural tube (EHDAA) + + + + @@ -2703,6 +2723,16 @@ + + + + + EHDAA:3500 + lamina terminalis of cerebral hemisphere (EHDAA) + + + + @@ -3877,6 +3907,16 @@ + + + + + EHDAA:4498 + lamina terminalis of cerebral hemisphere (EHDAA) + + + + @@ -4032,7 +4072,7 @@ EHDAA:4704 - otic capsule cartilage condensation (EHDAA) + otic capsule cartilage element (EHDAA) @@ -6404,7 +6444,7 @@ EHDAA:6240 - humerus cartilage condensation (EHDAA) + humerus cartilage element (EHDAA) @@ -7146,7 +7186,7 @@ EHDAA:7141 - basioccipital cartilage condensation (EHDAA) + basioccipital cartilage element (EHDAA) @@ -7176,7 +7216,7 @@ EHDAA:7267 - radius cartilage condensation (EHDAA) + radius cartilage element (EHDAA) @@ -7186,7 +7226,7 @@ EHDAA:7269 - ulna cartilage condensation (EHDAA) + ulna cartilage element (EHDAA) @@ -8496,7 +8536,7 @@ EHDAA:8347 - rib cartilage condensation (EHDAA) + rib cartilage element (EHDAA) @@ -8536,7 +8576,7 @@ EHDAA:8368 - scapula cartilage condensation (EHDAA) + scapula cartilage element (EHDAA) @@ -8596,7 +8636,7 @@ EHDAA:8544 - carpus cartilage condensation (EHDAA) + carpus cartilage element (EHDAA) @@ -9768,7 +9808,7 @@ EHDAA:9554 - orbitosphenoid cartilage condensation (EHDAA) + orbitosphenoid cartilage element (EHDAA) @@ -9828,7 +9868,7 @@ EHDAA:9570 - ischial cartilage condensation (EHDAA) + ischial cartilage element (EHDAA) @@ -12985,6 +13025,12 @@ + + + + + + @@ -14728,6 +14774,12 @@ + + + + + + diff --git a/bridge/uberon-bridge-to-ehdaa2.obo b/bridge/uberon-bridge-to-ehdaa2.obo index bb6d868255..10b85cb0d1 100644 --- a/bridge/uberon-bridge-to-ehdaa2.obo +++ b/bridge/uberon-bridge-to-ehdaa2.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ehdaa2 -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to ehdaa2" xsd:string property_value: dc-description "Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA" xsd:string @@ -4276,8 +4276,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000903 ! -property_value: IAO:0000589 "lamina terminalis of forebrain vesicle (embryonic human)" xsd:string -intersection_of: UBERON:0005078 ! lamina terminalis of forebrain vesicle +property_value: IAO:0000589 "lamina terminalis of neural tube (embryonic human)" xsd:string +intersection_of: UBERON:0005078 ! lamina terminalis of neural tube intersection_of: part_of NCBITaxon:9606 [Term] @@ -5536,8 +5536,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001329 ! -property_value: IAO:0000589 "orbitosphenoid cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0005687 ! orbitosphenoid cartilage condensation +property_value: IAO:0000589 "orbitosphenoid cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0005687 ! orbitosphenoid cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -5872,8 +5872,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000164 ! -property_value: IAO:0000589 "basioccipital cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006209 ! basioccipital cartilage condensation +property_value: IAO:0000589 "basioccipital cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006209 ! basioccipital cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -5896,8 +5896,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000221 ! -property_value: IAO:0000589 "carpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006213 ! carpus cartilage condensation +property_value: IAO:0000589 "carpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006213 ! carpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6028,8 +6028,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000787 ! -property_value: IAO:0000589 "humerus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006245 ! humerus cartilage condensation +property_value: IAO:0000589 "humerus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006245 ! humerus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6076,8 +6076,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000890 ! -property_value: IAO:0000589 "ischial cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006254 ! ischial cartilage condensation +property_value: IAO:0000589 "ischial cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006254 ! ischial cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6238,8 +6238,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001585 ! -property_value: IAO:0000589 "radius cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006286 ! radius cartilage condensation +property_value: IAO:0000589 "radius cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006286 ! radius cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6250,8 +6250,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001716 ! -property_value: IAO:0000589 "rib cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006288 ! rib cartilage condensation +property_value: IAO:0000589 "rib cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006288 ! rib cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6262,8 +6262,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001777 ! -property_value: IAO:0000589 "scapula cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006290 ! scapula cartilage condensation +property_value: IAO:0000589 "scapula cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006290 ! scapula cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6328,8 +6328,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0002098 ! -property_value: IAO:0000589 "ulna cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0006306 ! ulna cartilage condensation +property_value: IAO:0000589 "ulna cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0006306 ! ulna cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -6910,8 +6910,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001888 ! -property_value: IAO:0000589 "sphenoid bone cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0009193 ! sphenoid bone cartilage condensation +property_value: IAO:0000589 "sphenoid cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0009193 ! sphenoid cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -7894,8 +7894,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001333 ! -property_value: IAO:0000589 "otic capsule cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010351 ! otic capsule cartilage condensation +property_value: IAO:0000589 "otic capsule cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010351 ! otic capsule cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -7942,8 +7942,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001977 ! -property_value: IAO:0000589 "tarsus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010541 ! tarsus cartilage condensation +property_value: IAO:0000589 "tarsus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010541 ! tarsus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -8020,32 +8020,32 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000514 ! -property_value: IAO:0000589 "manual digit 1 metacarpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 1 metacarpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000520 ! -property_value: IAO:0000589 "manual digit 2 metacarpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 2 metacarpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000526 ! -property_value: IAO:0000589 "manual digit 3 metacarpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 3 metacarpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000532 ! -property_value: IAO:0000589 "manual digit 4 metacarpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 4 metacarpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000538 ! -property_value: IAO:0000589 "manual digit 5 metacarpus cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 5 metacarpus cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -8134,14 +8134,14 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000808 ! -property_value: IAO:0000589 "iliac cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010714 ! iliac cartilage condensation +property_value: IAO:0000589 "iliac cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010714 ! iliac cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001573 ! -property_value: IAO:0000589 "pubic cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010718 ! pubic cartilage condensation +property_value: IAO:0000589 "pubic cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010718 ! pubic cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -8158,8 +8158,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0003450 ! -property_value: IAO:0000589 "alisphenoid cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010733 ! alisphenoid cartilage condensation +property_value: IAO:0000589 "alisphenoid cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010733 ! alisphenoid cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -8176,8 +8176,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001773 ! -property_value: IAO:0000589 "sacral vertebra cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0010745 ! sacral vertebra cartilage condensation +property_value: IAO:0000589 "sacral vertebra cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0010745 ! sacral vertebra cartilage element intersection_of: part_of NCBITaxon:9606 [Term] @@ -8692,26 +8692,26 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000240 ! -property_value: IAO:0000589 "cervical vertebra cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0013505 ! cervical vertebra cartilage condensation +property_value: IAO:0000589 "cervical vertebra cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0013505 ! cervical vertebra cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0002014 ! -property_value: IAO:0000589 "thoracic vertebra cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0013507 ! thoracic vertebra cartilage condensation +property_value: IAO:0000589 "thoracic vertebra cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0013507 ! thoracic vertebra cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0001038 ! -property_value: IAO:0000589 "lumbar vertebra cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0013509 ! lumbar vertebra cartilage condensation +property_value: IAO:0000589 "lumbar vertebra cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0013509 ! lumbar vertebra cartilage element intersection_of: part_of NCBITaxon:9606 [Term] id: EHDAA2:0000260 ! -property_value: IAO:0000589 "coccygeal vertebra cartilage condensation (embryonic human)" xsd:string -intersection_of: UBERON:0013517 ! coccygeal vertebra cartilage condensation +property_value: IAO:0000589 "coccygeal vertebra cartilage element (embryonic human)" xsd:string +intersection_of: UBERON:0013517 ! coccygeal vertebra cartilage element intersection_of: part_of NCBITaxon:9606 [Term] diff --git a/bridge/uberon-bridge-to-ehdaa2.owl b/bridge/uberon-bridge-to-ehdaa2.owl index a947154662..275b03ed93 100644 --- a/bridge/uberon-bridge-to-ehdaa2.owl +++ b/bridge/uberon-bridge-to-ehdaa2.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -2168,7 +2168,7 @@ EHDAA2:0000164 - basioccipital cartilage condensation (embryonic human) + basioccipital cartilage element (embryonic human) @@ -2890,7 +2890,7 @@ EHDAA2:0000221 - carpus cartilage condensation (embryonic human) + carpus cartilage element (embryonic human) @@ -3110,7 +3110,7 @@ EHDAA2:0000240 - cervical vertebra cartilage condensation (embryonic human) + cervical vertebra cartilage element (embryonic human) @@ -3392,7 +3392,7 @@ EHDAA2:0000260 - coccygeal vertebra cartilage condensation (embryonic human) + coccygeal vertebra cartilage element (embryonic human) @@ -5674,7 +5674,7 @@ EHDAA2:0000514 - manual digit 1 metacarpus cartilage condensation (embryonic human) + manual digit 1 metacarpus cartilage element (embryonic human) @@ -5794,7 +5794,7 @@ EHDAA2:0000520 - manual digit 2 metacarpus cartilage condensation (embryonic human) + manual digit 2 metacarpus cartilage element (embryonic human) @@ -5914,7 +5914,7 @@ EHDAA2:0000526 - manual digit 3 metacarpus cartilage condensation (embryonic human) + manual digit 3 metacarpus cartilage element (embryonic human) @@ -6034,7 +6034,7 @@ EHDAA2:0000532 - manual digit 4 metacarpus cartilage condensation (embryonic human) + manual digit 4 metacarpus cartilage element (embryonic human) @@ -6154,7 +6154,7 @@ EHDAA2:0000538 - manual digit 5 metacarpus cartilage condensation (embryonic human) + manual digit 5 metacarpus cartilage element (embryonic human) @@ -8196,7 +8196,7 @@ EHDAA2:0000787 - humerus cartilage condensation (embryonic human) + humerus cartilage element (embryonic human) @@ -8436,7 +8436,7 @@ EHDAA2:0000808 - iliac cartilage condensation (embryonic human) + iliac cartilage element (embryonic human) @@ -9596,7 +9596,7 @@ EHDAA2:0000890 - ischial cartilage condensation (embryonic human) + ischial cartilage element (embryonic human) @@ -9756,7 +9756,7 @@ EHDAA2:0000903 - lamina terminalis of forebrain vesicle (embryonic human) + lamina terminalis of neural tube (embryonic human) @@ -11420,7 +11420,7 @@ EHDAA2:0001038 - lumbar vertebra cartilage condensation (embryonic human) + lumbar vertebra cartilage element (embryonic human) @@ -14300,7 +14300,7 @@ EHDAA2:0001329 - orbitosphenoid cartilage condensation (embryonic human) + orbitosphenoid cartilage element (embryonic human) @@ -14340,7 +14340,7 @@ EHDAA2:0001333 - otic capsule cartilage condensation (embryonic human) + otic capsule cartilage element (embryonic human) @@ -16462,7 +16462,7 @@ EHDAA2:0001573 - pubic cartilage condensation (embryonic human) + pubic cartilage element (embryonic human) @@ -16662,7 +16662,7 @@ EHDAA2:0001585 - radius cartilage condensation (embryonic human) + radius cartilage element (embryonic human) @@ -17642,7 +17642,7 @@ EHDAA2:0001716 - rib cartilage condensation (embryonic human) + rib cartilage element (embryonic human) @@ -18302,7 +18302,7 @@ EHDAA2:0001773 - sacral vertebra cartilage condensation (embryonic human) + sacral vertebra cartilage element (embryonic human) @@ -18382,7 +18382,7 @@ EHDAA2:0001777 - scapula cartilage condensation (embryonic human) + scapula cartilage element (embryonic human) @@ -18946,7 +18946,7 @@ EHDAA2:0001888 - sphenoid bone cartilage condensation (embryonic human) + sphenoid cartilage element (embryonic human) @@ -20086,7 +20086,7 @@ EHDAA2:0001977 - tarsus cartilage condensation (embryonic human) + tarsus cartilage element (embryonic human) @@ -20488,7 +20488,7 @@ EHDAA2:0002014 - thoracic vertebra cartilage condensation (embryonic human) + thoracic vertebra cartilage element (embryonic human) @@ -21768,7 +21768,7 @@ EHDAA2:0002098 - ulna cartilage condensation (embryonic human) + ulna cartilage element (embryonic human) @@ -25408,7 +25408,7 @@ EHDAA2:0003450 - alisphenoid cartilage condensation (embryonic human) + alisphenoid cartilage element (embryonic human) diff --git a/bridge/uberon-bridge-to-emapa.obo b/bridge/uberon-bridge-to-emapa.obo index 9f3c15b0ce..06c27cfe6f 100644 --- a/bridge/uberon-bridge-to-emapa.obo +++ b/bridge/uberon-bridge-to-emapa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-emapa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to emapa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and Uberon" xsd:string @@ -2467,18 +2467,18 @@ is_a: UBERON:0001686 ! auditory ossicle [Term] id: EMAPA:18585 ! -property_value: IAO:0000589 "stapes (embryonic mouse)" xsd:string -is_a: UBERON:0001687 ! stapes +property_value: IAO:0000589 "stapes bone (embryonic mouse)" xsd:string +is_a: UBERON:0001687 ! stapes bone [Term] id: EMAPA:18583 ! -property_value: IAO:0000589 "incus (embryonic mouse)" xsd:string -is_a: UBERON:0001688 ! incus +property_value: IAO:0000589 "incus bone (embryonic mouse)" xsd:string +is_a: UBERON:0001688 ! incus bone [Term] id: EMAPA:18584 ! -property_value: IAO:0000589 "malleus (embryonic mouse)" xsd:string -is_a: UBERON:0001689 ! malleus +property_value: IAO:0000589 "malleus bone (embryonic mouse)" xsd:string +is_a: UBERON:0001689 ! malleus bone [Term] id: EMAPA:16193 ! @@ -7697,13 +7697,13 @@ is_a: UBERON:0005071 ! posterior neuropore [Term] id: EMAPA:16649 ! -property_value: IAO:0000589 "lamina terminalis of forebrain vesicle (embryonic mouse)" xsd:string -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +property_value: IAO:0000589 "lamina terminalis of neural tube (embryonic mouse)" xsd:string +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: EMAPA:16904 ! -property_value: IAO:0000589 "lamina terminalis of forebrain vesicle (embryonic mouse)" xsd:string -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +property_value: IAO:0000589 "lamina terminalis of neural tube (embryonic mouse)" xsd:string +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: EMAPA:32715 ! @@ -9947,8 +9947,8 @@ is_a: UBERON:0006208 ! auditory hillocks [Term] id: EMAPA:18337 ! -property_value: IAO:0000589 "basioccipital cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006209 ! basioccipital cartilage condensation +property_value: IAO:0000589 "basioccipital cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: EMAPA:16893 ! @@ -9967,8 +9967,8 @@ is_a: UBERON:0006212 ! bulbo-ventricular groove [Term] id: EMAPA:18102 ! -property_value: IAO:0000589 "carpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006213 ! carpus cartilage condensation +property_value: IAO:0000589 "carpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: EMAPA:17724 ! @@ -10157,8 +10157,8 @@ is_a: UBERON:0006244 ! hip joint primordium [Term] id: EMAPA:17713 ! -property_value: IAO:0000589 "humerus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006245 ! humerus cartilage condensation +property_value: IAO:0000589 "humerus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: EMAPA:17427 ! @@ -10207,8 +10207,8 @@ is_a: UBERON:0006253 ! embryonic intraretinal space [Term] id: EMAPA:26930 ! -property_value: IAO:0000589 "ischial cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006254 ! ischial cartilage condensation +property_value: IAO:0000589 "ischial cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006254 ! ischial cartilage element [Term] id: EMAPA:18348 ! @@ -10377,8 +10377,8 @@ is_a: UBERON:0006285 ! pubic pre-cartilage condensation [Term] id: EMAPA:18054 ! -property_value: IAO:0000589 "radius cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006286 ! radius cartilage condensation +property_value: IAO:0000589 "radius cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006286 ! radius cartilage element [Term] id: EMAPA:17420 ! @@ -10387,8 +10387,8 @@ is_a: UBERON:0006287 ! radius-ulna pre-cartilage condensation [Term] id: EMAPA:17678 ! -property_value: IAO:0000589 "rib cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006288 ! rib cartilage condensation +property_value: IAO:0000589 "rib cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006288 ! rib cartilage element [Term] id: EMAPA:17397 ! @@ -10397,8 +10397,8 @@ is_a: UBERON:0006289 ! rib pre-cartilage condensation [Term] id: EMAPA:18343 ! -property_value: IAO:0000589 "scapula cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006290 ! scapula cartilage condensation +property_value: IAO:0000589 "scapula cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: EMAPA:18027 ! @@ -10477,8 +10477,8 @@ is_a: UBERON:0006305 ! tunica vasculosa lentis [Term] id: EMAPA:18055 ! -property_value: IAO:0000589 "ulna cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0006306 ! ulna cartilage condensation +property_value: IAO:0000589 "ulna cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: EMAPA:17210 ! @@ -11807,8 +11807,8 @@ is_a: UBERON:0007329 ! pancreatic duct [Term] id: EMAPA:18228 ! -property_value: IAO:0000589 "incus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0007374 ! incus cartilage condensation +property_value: IAO:0000589 "incus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0007374 ! incus cartilage element [Term] id: EMAPA:29836 ! @@ -12682,13 +12682,13 @@ is_a: UBERON:0010047 ! oral gland [Term] id: EMAPA:18229 ! -property_value: IAO:0000589 "malleus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010054 ! malleus cartilage condensation +property_value: IAO:0000589 "malleus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010054 ! malleus cartilage element [Term] id: EMAPA:18230 ! -property_value: IAO:0000589 "stapes cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010055 ! stapes cartilage condensation +property_value: IAO:0000589 "stapes cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010055 ! stapes cartilage element [Term] id: EMAPA:17352 ! @@ -12702,8 +12702,8 @@ is_a: UBERON:0010062 ! pharyngotympanic tube epithelium [Term] id: EMAPA:17742 ! -property_value: IAO:0000589 "femur cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010129 ! femur cartilage condensation +property_value: IAO:0000589 "femur cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010129 ! femur cartilage element [Term] id: EMAPA:32737 ! @@ -12802,8 +12802,8 @@ is_a: UBERON:0010345 ! 4th arch mesenchyme from head mesenchyme [Term] id: EMAPA:17596 ! -property_value: IAO:0000589 "otic capsule cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010351 ! otic capsule cartilage condensation +property_value: IAO:0000589 "otic capsule cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010351 ! otic capsule cartilage element [Term] id: EMAPA:17351 ! @@ -12867,28 +12867,28 @@ is_a: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation [Term] id: EMAPA:18106 ! -property_value: IAO:0000589 "pedal digit 1 metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit 1 metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element [Term] id: EMAPA:18111 ! -property_value: IAO:0000589 "pedal digit 2 metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit 2 metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element [Term] id: EMAPA:18116 ! -property_value: IAO:0000589 "pedal digit 3 metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit 3 metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element [Term] id: EMAPA:18121 ! -property_value: IAO:0000589 "pedal digit 4 metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit 4 metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element [Term] id: EMAPA:18126 ! -property_value: IAO:0000589 "pedal digit 5 metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit 5 metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element [Term] id: EMAPA:17462 ! @@ -12927,28 +12927,28 @@ is_a: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation [Term] id: EMAPA:18065 ! -property_value: IAO:0000589 "manual digit 1 metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 1 metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage element [Term] id: EMAPA:18070 ! -property_value: IAO:0000589 "manual digit 2 metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 2 metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage element [Term] id: EMAPA:18075 ! -property_value: IAO:0000589 "manual digit 3 metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 3 metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage element [Term] id: EMAPA:18080 ! -property_value: IAO:0000589 "manual digit 4 metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 4 metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage element [Term] id: EMAPA:18085 ! -property_value: IAO:0000589 "manual digit 5 metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit 5 metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage element [Term] id: EMAPA:17715 ! @@ -13012,63 +13012,63 @@ is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation [Term] id: EMAPA:18066 ! -property_value: IAO:0000589 "manual digit 1 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +property_value: IAO:0000589 "manual digit 1 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element [Term] id: EMAPA:18071 ! -property_value: IAO:0000589 "manual digit 2 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +property_value: IAO:0000589 "manual digit 2 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element [Term] id: EMAPA:18076 ! -property_value: IAO:0000589 "manual digit 3 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +property_value: IAO:0000589 "manual digit 3 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element [Term] id: EMAPA:18081 ! -property_value: IAO:0000589 "manual digit 4 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +property_value: IAO:0000589 "manual digit 4 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element [Term] id: EMAPA:18086 ! -property_value: IAO:0000589 "manual digit 5 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +property_value: IAO:0000589 "manual digit 5 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element [Term] id: EMAPA:18107 ! -property_value: IAO:0000589 "pedal digit 1 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit 1 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element [Term] id: EMAPA:18112 ! -property_value: IAO:0000589 "pedal digit 2 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit 2 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element [Term] id: EMAPA:18117 ! -property_value: IAO:0000589 "pedal digit 3 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit 3 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element [Term] id: EMAPA:18122 ! -property_value: IAO:0000589 "pedal digit 4 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit 4 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element [Term] id: EMAPA:18127 ! -property_value: IAO:0000589 "pedal digit 5 phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit 5 phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element [Term] id: EMAPA:32948 ! -property_value: IAO:0000589 "pedal digit phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +property_value: IAO:0000589 "pedal digit phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element [Term] id: EMAPA:32658 ! -property_value: IAO:0000589 "manual digit phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +property_value: IAO:0000589 "manual digit phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010686 ! manual digit phalanx cartilage element [Term] id: EMAPA:32956 ! @@ -13092,8 +13092,8 @@ is_a: UBERON:0010695 ! mesenchyme of tarsal region [Term] id: EMAPA:32951 ! -property_value: IAO:0000589 "pedal digit metatarsal cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +property_value: IAO:0000589 "pedal digit metatarsal cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element [Term] id: EMAPA:32850 ! @@ -13102,8 +13102,8 @@ is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation [Term] id: EMAPA:32849 ! -property_value: IAO:0000589 "manual digit metacarpus cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +property_value: IAO:0000589 "manual digit metacarpus cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element [Term] id: EMAPA:32720 ! @@ -13112,8 +13112,8 @@ is_a: UBERON:0010700 ! phalanx pre-cartilage condensation [Term] id: EMAPA:32721 ! -property_value: IAO:0000589 "phalanx cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010701 ! phalanx cartilage condensation +property_value: IAO:0000589 "phalanx cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010701 ! phalanx cartilage element [Term] id: EMAPA:32719 ! @@ -13132,8 +13132,8 @@ is_a: UBERON:0010706 ! parenchyma of caudate lobe of liver [Term] id: EMAPA:18347 ! -property_value: IAO:0000589 "iliac cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010714 ! iliac cartilage condensation +property_value: IAO:0000589 "iliac cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010714 ! iliac cartilage element [Term] id: EMAPA:32660 ! @@ -13147,13 +13147,13 @@ is_a: UBERON:0010744 ! sacral vertebra pre-cartilage condensation [Term] id: EMAPA:18009 ! -property_value: IAO:0000589 "sacral vertebra cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010745 ! sacral vertebra cartilage condensation +property_value: IAO:0000589 "sacral vertebra cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010745 ! sacral vertebra cartilage element [Term] id: EMAPA:18339 ! -property_value: IAO:0000589 "exoccipital cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010752 ! exoccipital cartilage condensation +property_value: IAO:0000589 "exoccipital cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010752 ! exoccipital cartilage element [Term] id: EMAPA:17736 ! @@ -13162,13 +13162,13 @@ is_a: UBERON:0010801 ! calcaneum pre-cartilage condensation [Term] id: EMAPA:18143 ! -property_value: IAO:0000589 "calcaneum cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010842 ! calcaneum cartilage condensation +property_value: IAO:0000589 "calcaneum cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010842 ! calcaneum cartilage element [Term] id: EMAPA:18342 ! -property_value: IAO:0000589 "clavicle cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010843 ! clavicle cartilage condensation +property_value: IAO:0000589 "clavicle cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010843 ! clavicle cartilage element [Term] id: EMAPA:18026 ! @@ -13177,18 +13177,18 @@ is_a: UBERON:0010844 ! clavicle pre-cartilage condensation [Term] id: EMAPA:17711 ! -property_value: IAO:0000589 "radius-ulna cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010848 ! radius-ulna cartilage condensation +property_value: IAO:0000589 "radius-ulna cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010848 ! radius-ulna cartilage element [Term] id: EMAPA:18155 ! -property_value: IAO:0000589 "tibia cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010849 ! tibia cartilage condensation +property_value: IAO:0000589 "tibia cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010849 ! tibia cartilage element [Term] id: EMAPA:18154 ! -property_value: IAO:0000589 "fibula cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0010851 ! fibula cartilage condensation +property_value: IAO:0000589 "fibula cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0010851 ! fibula cartilage element [Term] id: EMAPA:18189 ! @@ -13207,8 +13207,8 @@ is_a: UBERON:0011050 ! thoracic vertebra 8 [Term] id: EMAPA:32669 ! -property_value: IAO:0000589 "vertebra cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0011094 ! vertebra cartilage condensation +property_value: IAO:0000589 "vertebra cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0011094 ! vertebra cartilage element [Term] id: EMAPA:32671 ! @@ -13232,8 +13232,8 @@ is_a: UBERON:0011156 ! facial skeleton [Term] id: EMAPA:18341 ! -property_value: IAO:0000589 "supraoccipital cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0011162 ! supraoccipital cartilage condensation +property_value: IAO:0000589 "supraoccipital cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0011162 ! supraoccipital cartilage element [Term] id: EMAPA:29850 ! @@ -13762,8 +13762,8 @@ is_a: UBERON:0012068 ! right lung middle lobe bronchiole [Term] id: EMAPA:19140 ! -property_value: IAO:0000589 "patella cartilage condensation (embryonic mouse)" xsd:string -is_a: UBERON:0012080 ! patella cartilage condensation +property_value: IAO:0000589 "patella cartilage element (embryonic mouse)" xsd:string +is_a: UBERON:0012080 ! patella cartilage element [Term] id: EMAPA:18510 ! diff --git a/bridge/uberon-bridge-to-emapa.owl b/bridge/uberon-bridge-to-emapa.owl index 7cbfce844a..2e6d18cb55 100644 --- a/bridge/uberon-bridge-to-emapa.owl +++ b/bridge/uberon-bridge-to-emapa.owl @@ -21,7 +21,7 @@ vHOG editors - + @@ -4210,7 +4210,7 @@ EMAPA:16649 - lamina terminalis of forebrain vesicle (embryonic mouse) + lamina terminalis of neural tube (embryonic mouse) @@ -5842,7 +5842,7 @@ EMAPA:16904 - lamina terminalis of forebrain vesicle (embryonic mouse) + lamina terminalis of neural tube (embryonic mouse) @@ -10350,7 +10350,7 @@ EMAPA:17596 - otic capsule cartilage condensation (embryonic mouse) + otic capsule cartilage element (embryonic mouse) @@ -10870,7 +10870,7 @@ EMAPA:17678 - rib cartilage condensation (embryonic mouse) + rib cartilage element (embryonic mouse) @@ -11050,7 +11050,7 @@ EMAPA:17711 - radius-ulna cartilage condensation (embryonic mouse) + radius-ulna cartilage element (embryonic mouse) @@ -11070,7 +11070,7 @@ EMAPA:17713 - humerus cartilage condensation (embryonic mouse) + humerus cartilage element (embryonic mouse) @@ -11320,7 +11320,7 @@ EMAPA:17742 - femur cartilage condensation (embryonic mouse) + femur cartilage element (embryonic mouse) @@ -13178,7 +13178,7 @@ EMAPA:18009 - sacral vertebra cartilage condensation (embryonic mouse) + sacral vertebra cartilage element (embryonic mouse) @@ -13490,7 +13490,7 @@ EMAPA:18054 - radius cartilage condensation (embryonic mouse) + radius cartilage element (embryonic mouse) @@ -13500,7 +13500,7 @@ EMAPA:18055 - ulna cartilage condensation (embryonic mouse) + ulna cartilage element (embryonic mouse) @@ -13542,7 +13542,7 @@ EMAPA:18065 - manual digit 1 metacarpus cartilage condensation (embryonic mouse) + manual digit 1 metacarpus cartilage element (embryonic mouse) @@ -13552,7 +13552,7 @@ EMAPA:18066 - manual digit 1 phalanx cartilage condensation (embryonic mouse) + manual digit 1 phalanx cartilage element (embryonic mouse) @@ -13562,7 +13562,7 @@ EMAPA:18070 - manual digit 2 metacarpus cartilage condensation (embryonic mouse) + manual digit 2 metacarpus cartilage element (embryonic mouse) @@ -13572,7 +13572,7 @@ EMAPA:18071 - manual digit 2 phalanx cartilage condensation (embryonic mouse) + manual digit 2 phalanx cartilage element (embryonic mouse) @@ -13582,7 +13582,7 @@ EMAPA:18075 - manual digit 3 metacarpus cartilage condensation (embryonic mouse) + manual digit 3 metacarpus cartilage element (embryonic mouse) @@ -13592,7 +13592,7 @@ EMAPA:18076 - manual digit 3 phalanx cartilage condensation (embryonic mouse) + manual digit 3 phalanx cartilage element (embryonic mouse) @@ -13602,7 +13602,7 @@ EMAPA:18080 - manual digit 4 metacarpus cartilage condensation (embryonic mouse) + manual digit 4 metacarpus cartilage element (embryonic mouse) @@ -13612,7 +13612,7 @@ EMAPA:18081 - manual digit 4 phalanx cartilage condensation (embryonic mouse) + manual digit 4 phalanx cartilage element (embryonic mouse) @@ -13622,7 +13622,7 @@ EMAPA:18085 - manual digit 5 metacarpus cartilage condensation (embryonic mouse) + manual digit 5 metacarpus cartilage element (embryonic mouse) @@ -13632,7 +13632,7 @@ EMAPA:18086 - manual digit 5 phalanx cartilage condensation (embryonic mouse) + manual digit 5 phalanx cartilage element (embryonic mouse) @@ -13642,7 +13642,7 @@ EMAPA:18102 - carpus cartilage condensation (embryonic mouse) + carpus cartilage element (embryonic mouse) @@ -13652,7 +13652,7 @@ EMAPA:18106 - pedal digit 1 metatarsal cartilage condensation (embryonic mouse) + pedal digit 1 metatarsal cartilage element (embryonic mouse) @@ -13662,7 +13662,7 @@ EMAPA:18107 - pedal digit 1 phalanx cartilage condensation (embryonic mouse) + pedal digit 1 phalanx cartilage element (embryonic mouse) @@ -13672,7 +13672,7 @@ EMAPA:18111 - pedal digit 2 metatarsal cartilage condensation (embryonic mouse) + pedal digit 2 metatarsal cartilage element (embryonic mouse) @@ -13682,7 +13682,7 @@ EMAPA:18112 - pedal digit 2 phalanx cartilage condensation (embryonic mouse) + pedal digit 2 phalanx cartilage element (embryonic mouse) @@ -13692,7 +13692,7 @@ EMAPA:18116 - pedal digit 3 metatarsal cartilage condensation (embryonic mouse) + pedal digit 3 metatarsal cartilage element (embryonic mouse) @@ -13702,7 +13702,7 @@ EMAPA:18117 - pedal digit 3 phalanx cartilage condensation (embryonic mouse) + pedal digit 3 phalanx cartilage element (embryonic mouse) @@ -13712,7 +13712,7 @@ EMAPA:18121 - pedal digit 4 metatarsal cartilage condensation (embryonic mouse) + pedal digit 4 metatarsal cartilage element (embryonic mouse) @@ -13722,7 +13722,7 @@ EMAPA:18122 - pedal digit 4 phalanx cartilage condensation (embryonic mouse) + pedal digit 4 phalanx cartilage element (embryonic mouse) @@ -13732,7 +13732,7 @@ EMAPA:18126 - pedal digit 5 metatarsal cartilage condensation (embryonic mouse) + pedal digit 5 metatarsal cartilage element (embryonic mouse) @@ -13742,7 +13742,7 @@ EMAPA:18127 - pedal digit 5 phalanx cartilage condensation (embryonic mouse) + pedal digit 5 phalanx cartilage element (embryonic mouse) @@ -13752,7 +13752,7 @@ EMAPA:18143 - calcaneum cartilage condensation (embryonic mouse) + calcaneum cartilage element (embryonic mouse) @@ -13782,7 +13782,7 @@ EMAPA:18154 - fibula cartilage condensation (embryonic mouse) + fibula cartilage element (embryonic mouse) @@ -13792,7 +13792,7 @@ EMAPA:18155 - tibia cartilage condensation (embryonic mouse) + tibia cartilage element (embryonic mouse) @@ -14280,7 +14280,7 @@ EMAPA:18228 - incus cartilage condensation (embryonic mouse) + incus cartilage element (embryonic mouse) @@ -14290,7 +14290,7 @@ EMAPA:18229 - malleus cartilage condensation (embryonic mouse) + malleus cartilage element (embryonic mouse) @@ -14300,7 +14300,7 @@ EMAPA:18230 - stapes cartilage condensation (embryonic mouse) + stapes cartilage element (embryonic mouse) @@ -15032,7 +15032,7 @@ EMAPA:18337 - basioccipital cartilage condensation (embryonic mouse) + basioccipital cartilage element (embryonic mouse) @@ -15052,7 +15052,7 @@ EMAPA:18339 - exoccipital cartilage condensation (embryonic mouse) + exoccipital cartilage element (embryonic mouse) @@ -15072,7 +15072,7 @@ EMAPA:18341 - supraoccipital cartilage condensation (embryonic mouse) + supraoccipital cartilage element (embryonic mouse) @@ -15082,7 +15082,7 @@ EMAPA:18342 - clavicle cartilage condensation (embryonic mouse) + clavicle cartilage element (embryonic mouse) @@ -15092,7 +15092,7 @@ EMAPA:18343 - scapula cartilage condensation (embryonic mouse) + scapula cartilage element (embryonic mouse) @@ -15132,7 +15132,7 @@ EMAPA:18347 - iliac cartilage condensation (embryonic mouse) + iliac cartilage element (embryonic mouse) @@ -16056,7 +16056,7 @@ EMAPA:18583 - incus (embryonic mouse) + incus bone (embryonic mouse) @@ -16066,7 +16066,7 @@ EMAPA:18584 - malleus (embryonic mouse) + malleus bone (embryonic mouse) @@ -16076,7 +16076,7 @@ EMAPA:18585 - stapes (embryonic mouse) + stapes bone (embryonic mouse) @@ -19608,7 +19608,7 @@ EMAPA:19140 - patella cartilage condensation (embryonic mouse) + patella cartilage element (embryonic mouse) @@ -23094,7 +23094,7 @@ EMAPA:26930 - ischial cartilage condensation (embryonic mouse) + ischial cartilage element (embryonic mouse) @@ -26308,7 +26308,7 @@ EMAPA:32658 - manual digit phalanx cartilage condensation (embryonic mouse) + manual digit phalanx cartilage element (embryonic mouse) @@ -26388,7 +26388,7 @@ EMAPA:32669 - vertebra cartilage condensation (embryonic mouse) + vertebra cartilage element (embryonic mouse) @@ -26714,7 +26714,7 @@ EMAPA:32721 - phalanx cartilage condensation (embryonic mouse) + phalanx cartilage element (embryonic mouse) @@ -27508,7 +27508,7 @@ EMAPA:32849 - manual digit metacarpus cartilage condensation (embryonic mouse) + manual digit metacarpus cartilage element (embryonic mouse) @@ -27878,7 +27878,7 @@ EMAPA:32948 - pedal digit phalanx cartilage condensation (embryonic mouse) + pedal digit phalanx cartilage element (embryonic mouse) @@ -27898,7 +27898,7 @@ EMAPA:32951 - pedal digit metatarsal cartilage condensation (embryonic mouse) + pedal digit metatarsal cartilage element (embryonic mouse) diff --git a/bridge/uberon-bridge-to-fbbt.obo b/bridge/uberon-bridge-to-fbbt.obo index 2c5cca2c89..205d4f3db8 100644 --- a/bridge/uberon-bridge-to-fbbt.obo +++ b/bridge/uberon-bridge-to-fbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-fbbt -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to fbbt" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and Uberon. Note that currently Uberon focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future Uberon may bridge via the arthropod anatomy ontology" xsd:string diff --git a/bridge/uberon-bridge-to-fbbt.owl b/bridge/uberon-bridge-to-fbbt.owl index 9a0b693893..4159edfbd0 100644 --- a/bridge/uberon-bridge-to-fbbt.owl +++ b/bridge/uberon-bridge-to-fbbt.owl @@ -19,7 +19,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-fma.obo b/bridge/uberon-bridge-to-fma.obo index 31485cf2d2..ade3db6f36 100644 --- a/bridge/uberon-bridge-to-fma.obo +++ b/bridge/uberon-bridge-to-fma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-fma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to fma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between the FMA and Uberon" xsd:string @@ -4847,8 +4847,8 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: FMA:33923 ! -property_value: IAO:0000589 "tibial cartilage (post-embryonic human)" xsd:string -intersection_of: UBERON:0000313 ! tibial cartilage +property_value: IAO:0000589 "tibial cartilage tissue (post-embryonic human)" xsd:string +intersection_of: UBERON:0000313 ! tibial cartilage tissue intersection_of: part_of NCBITaxon:9606 [Term] @@ -9845,20 +9845,20 @@ intersection_of: part_of NCBITaxon:9606 [Term] id: FMA:52751 ! -property_value: IAO:0000589 "stapes (post-embryonic human)" xsd:string -intersection_of: UBERON:0001687 ! stapes +property_value: IAO:0000589 "stapes bone (post-embryonic human)" xsd:string +intersection_of: UBERON:0001687 ! stapes bone intersection_of: part_of NCBITaxon:9606 [Term] id: FMA:52752 ! -property_value: IAO:0000589 "incus (post-embryonic human)" xsd:string -intersection_of: UBERON:0001688 ! incus +property_value: IAO:0000589 "incus bone (post-embryonic human)" xsd:string +intersection_of: UBERON:0001688 ! incus bone intersection_of: part_of NCBITaxon:9606 [Term] id: FMA:52753 ! -property_value: IAO:0000589 "malleus (post-embryonic human)" xsd:string -intersection_of: UBERON:0001689 ! malleus +property_value: IAO:0000589 "malleus bone (post-embryonic human)" xsd:string +intersection_of: UBERON:0001689 ! malleus bone intersection_of: part_of NCBITaxon:9606 [Term] @@ -22029,12 +22029,6 @@ property_value: IAO:0000589 "external female genitalia (post-embryonic human)" x intersection_of: UBERON:0005056 ! external female genitalia intersection_of: part_of NCBITaxon:9606 -[Term] -id: FMA:61975 ! -property_value: IAO:0000589 "lamina terminalis of forebrain vesicle (post-embryonic human)" xsd:string -intersection_of: UBERON:0005078 ! lamina terminalis of forebrain vesicle -intersection_of: part_of NCBITaxon:9606 - [Term] id: FMA:70321 ! property_value: IAO:0000589 "left horn of sinus venosus (post-embryonic human)" xsd:string @@ -32853,6 +32847,12 @@ property_value: IAO:0000589 "genu of facial nerve (post-embryonic human)" xsd:st intersection_of: UBERON:0014915 ! genu of facial nerve intersection_of: part_of NCBITaxon:9606 +[Term] +id: FMA:61975 ! +property_value: IAO:0000589 "lamina terminalis of cerebral hemisphere (post-embryonic human)" xsd:string +intersection_of: UBERON:0015117 ! lamina terminalis of cerebral hemisphere +intersection_of: part_of NCBITaxon:9606 + [Term] id: FMA:46484 ! property_value: IAO:0000589 "top of head (post-embryonic human)" xsd:string diff --git a/bridge/uberon-bridge-to-fma.owl b/bridge/uberon-bridge-to-fma.owl index 8feed3f989..109f78cfa3 100644 --- a/bridge/uberon-bridge-to-fma.owl +++ b/bridge/uberon-bridge-to-fma.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -35231,7 +35231,7 @@ FMA:33923 - tibial cartilage (post-embryonic human) + tibial cartilage tissue (post-embryonic human) @@ -47693,7 +47693,7 @@ FMA:52751 - stapes (post-embryonic human) + stapes bone (post-embryonic human) @@ -47713,7 +47713,7 @@ FMA:52752 - incus (post-embryonic human) + incus bone (post-embryonic human) @@ -47733,7 +47733,7 @@ FMA:52753 - malleus (post-embryonic human) + malleus bone (post-embryonic human) @@ -62134,7 +62134,7 @@ - + @@ -62143,7 +62143,7 @@ FMA:61975 - lamina terminalis of forebrain vesicle (post-embryonic human) + lamina terminalis of cerebral hemisphere (post-embryonic human) @@ -131130,12 +131130,6 @@ - - - - - - @@ -141888,6 +141882,12 @@ + + + + + + diff --git a/bridge/uberon-bridge-to-go.obo b/bridge/uberon-bridge-to-go.obo index feefbfea2b..abe05b8083 100644 --- a/bridge/uberon-bridge-to-go.obo +++ b/bridge/uberon-bridge-to-go.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-go -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-go.owl b/bridge/uberon-bridge-to-go.owl index 737e5406c7..30cdd43760 100644 --- a/bridge/uberon-bridge-to-go.owl +++ b/bridge/uberon-bridge-to-go.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-hao.obo b/bridge/uberon-bridge-to-hao.obo index 397a5297fb..b566067ed0 100644 --- a/bridge/uberon-bridge-to-hao.obo +++ b/bridge/uberon-bridge-to-hao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-hao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-hao.owl b/bridge/uberon-bridge-to-hao.owl index fdf1fdbd8e..edb091f7ac 100644 --- a/bridge/uberon-bridge-to-hao.owl +++ b/bridge/uberon-bridge-to-hao.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-ma.obo b/bridge/uberon-bridge-to-ma.obo index cefdc3b7cc..1912402483 100644 --- a/bridge/uberon-bridge-to-ma.obo +++ b/bridge/uberon-bridge-to-ma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to ma" xsd:string property_value: dc-description "Taxonomic equivalence axioms between adult moouse anatomy and Uberon" xsd:string @@ -4433,20 +4433,20 @@ intersection_of: part_of NCBITaxon:10088 [Term] id: MA:0001217 ! -property_value: IAO:0000589 "stapes (post-embryonic mouse)" xsd:string -intersection_of: UBERON:0001687 ! stapes +property_value: IAO:0000589 "stapes bone (post-embryonic mouse)" xsd:string +intersection_of: UBERON:0001687 ! stapes bone intersection_of: part_of NCBITaxon:10088 [Term] id: MA:0001215 ! -property_value: IAO:0000589 "incus (post-embryonic mouse)" xsd:string -intersection_of: UBERON:0001688 ! incus +property_value: IAO:0000589 "incus bone (post-embryonic mouse)" xsd:string +intersection_of: UBERON:0001688 ! incus bone intersection_of: part_of NCBITaxon:10088 [Term] id: MA:0001216 ! -property_value: IAO:0000589 "malleus (post-embryonic mouse)" xsd:string -intersection_of: UBERON:0001689 ! malleus +property_value: IAO:0000589 "malleus bone (post-embryonic mouse)" xsd:string +intersection_of: UBERON:0001689 ! malleus bone intersection_of: part_of NCBITaxon:10088 [Term] diff --git a/bridge/uberon-bridge-to-ma.owl b/bridge/uberon-bridge-to-ma.owl index 58b8ae228e..4d5aa9345a 100644 --- a/bridge/uberon-bridge-to-ma.owl +++ b/bridge/uberon-bridge-to-ma.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -23517,7 +23517,7 @@ MA:0001215 - incus (post-embryonic mouse) + incus bone (post-embryonic mouse) @@ -23537,7 +23537,7 @@ MA:0001216 - malleus (post-embryonic mouse) + malleus bone (post-embryonic mouse) @@ -23557,7 +23557,7 @@ MA:0001217 - stapes (post-embryonic mouse) + stapes bone (post-embryonic mouse) diff --git a/bridge/uberon-bridge-to-mfo.obo b/bridge/uberon-bridge-to-mfo.obo index 1f23ff73d7..216087a9a5 100644 --- a/bridge/uberon-bridge-to-mfo.obo +++ b/bridge/uberon-bridge-to-mfo.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-mfo -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-mfo.owl b/bridge/uberon-bridge-to-mfo.owl index ac2e16e169..6683773792 100644 --- a/bridge/uberon-bridge-to-mfo.owl +++ b/bridge/uberon-bridge-to-mfo.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-ncithesaurus.obo b/bridge/uberon-bridge-to-ncithesaurus.obo index 9c5e52a4b8..b2d56f8b3b 100644 --- a/bridge/uberon-bridge-to-ncithesaurus.obo +++ b/bridge/uberon-bridge-to-ncithesaurus.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-ncithesaurus -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] @@ -3569,18 +3569,18 @@ is_a: UBERON:0001686 ! auditory ossicle [Term] id: ncithesaurus:Stapes ! -property_value: IAO:0000589 "stapes (ncithesaurus)" xsd:string -is_a: UBERON:0001687 ! stapes +property_value: IAO:0000589 "stapes bone (ncithesaurus)" xsd:string +is_a: UBERON:0001687 ! stapes bone [Term] id: ncithesaurus:Incus ! -property_value: IAO:0000589 "incus (ncithesaurus)" xsd:string -is_a: UBERON:0001688 ! incus +property_value: IAO:0000589 "incus bone (ncithesaurus)" xsd:string +is_a: UBERON:0001688 ! incus bone [Term] id: ncithesaurus:Malleus ! -property_value: IAO:0000589 "malleus (ncithesaurus)" xsd:string -is_a: UBERON:0001689 ! malleus +property_value: IAO:0000589 "malleus bone (ncithesaurus)" xsd:string +is_a: UBERON:0001689 ! malleus bone [Term] id: ncithesaurus:Ear ! diff --git a/bridge/uberon-bridge-to-ncithesaurus.owl b/bridge/uberon-bridge-to-ncithesaurus.owl index 393f33090b..76b5809539 100644 --- a/bridge/uberon-bridge-to-ncithesaurus.owl +++ b/bridge/uberon-bridge-to-ncithesaurus.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -16005,7 +16005,7 @@ - incus (ncithesaurus) + incus bone (ncithesaurus) ncithesaurus:Incus @@ -16275,7 +16275,7 @@ - malleus (ncithesaurus) + malleus bone (ncithesaurus) ncithesaurus:Malleus @@ -17546,7 +17546,7 @@ ncithesaurus:Stapes - stapes (ncithesaurus) + stapes bone (ncithesaurus) diff --git a/bridge/uberon-bridge-to-nif_grossanatomy.obo b/bridge/uberon-bridge-to-nif_grossanatomy.obo index 389535f276..d9235cf801 100644 --- a/bridge/uberon-bridge-to-nif_grossanatomy.obo +++ b/bridge/uberon-bridge-to-nif_grossanatomy.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-nif_grossanatomy -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-nif_grossanatomy.owl b/bridge/uberon-bridge-to-nif_grossanatomy.owl index 29e705b01e..9b9072433b 100644 --- a/bridge/uberon-bridge-to-nif_grossanatomy.owl +++ b/bridge/uberon-bridge-to-nif_grossanatomy.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-og.obo b/bridge/uberon-bridge-to-og.obo index c32d264197..0473ec16e5 100644 --- a/bridge/uberon-bridge-to-og.obo +++ b/bridge/uberon-bridge-to-og.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-og -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Typedef] diff --git a/bridge/uberon-bridge-to-og.owl b/bridge/uberon-bridge-to-og.owl index dab52e605e..e261b70c9c 100644 --- a/bridge/uberon-bridge-to-og.owl +++ b/bridge/uberon-bridge-to-og.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-spd.obo b/bridge/uberon-bridge-to-spd.obo index 800e450f86..15baf68abf 100644 --- a/bridge/uberon-bridge-to-spd.obo +++ b/bridge/uberon-bridge-to-spd.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-spd -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-spd.owl b/bridge/uberon-bridge-to-spd.owl index 316d836b2b..dea4b835a4 100644 --- a/bridge/uberon-bridge-to-spd.owl +++ b/bridge/uberon-bridge-to-spd.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-tads.obo b/bridge/uberon-bridge-to-tads.obo index 88f19a47cd..6f0848d086 100644 --- a/bridge/uberon-bridge-to-tads.obo +++ b/bridge/uberon-bridge-to-tads.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-tads -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-tads.owl b/bridge/uberon-bridge-to-tads.owl index 5bcf2913e7..93e9347270 100644 --- a/bridge/uberon-bridge-to-tads.owl +++ b/bridge/uberon-bridge-to-tads.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-tao.owl b/bridge/uberon-bridge-to-tao.owl index 7b091f770c..8d02d575bd 100644 --- a/bridge/uberon-bridge-to-tao.owl +++ b/bridge/uberon-bridge-to-tao.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -14447,7 +14447,7 @@ TAO:0001670 - articular cartilage condensation (teleost) + articular cartilage element (teleost) diff --git a/bridge/uberon-bridge-to-tgma.obo b/bridge/uberon-bridge-to-tgma.obo index 49bb1d759f..a920204346 100644 --- a/bridge/uberon-bridge-to-tgma.obo +++ b/bridge/uberon-bridge-to-tgma.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-tgma -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-tgma.owl b/bridge/uberon-bridge-to-tgma.owl index 1fe88c8252..4e3ffcf372 100644 --- a/bridge/uberon-bridge-to-tgma.owl +++ b/bridge/uberon-bridge-to-tgma.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-wbbt.obo b/bridge/uberon-bridge-to-wbbt.obo index f428217c15..210d6cc783 100644 --- a/bridge/uberon-bridge-to-wbbt.obo +++ b/bridge/uberon-bridge-to-wbbt.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-wbbt -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI [Term] diff --git a/bridge/uberon-bridge-to-wbbt.owl b/bridge/uberon-bridge-to-wbbt.owl index 6da1b62baa..291d884d70 100644 --- a/bridge/uberon-bridge-to-wbbt.owl +++ b/bridge/uberon-bridge-to-wbbt.owl @@ -13,7 +13,7 @@ xmlns:doap="http://usefulinc.com/ns/doap#"> http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + diff --git a/bridge/uberon-bridge-to-xao.obo b/bridge/uberon-bridge-to-xao.obo index 1f1c9717c9..00bb1c23e2 100644 --- a/bridge/uberon-bridge-to-xao.obo +++ b/bridge/uberon-bridge-to-xao.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-xao -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to xao" xsd:string property_value: dc-description "Taxonomic equivalence axioms between XAO and Uberon" xsd:string @@ -3309,6 +3309,12 @@ property_value: IAO:0000589 "tailbud stage (xenopus)" xsd:string intersection_of: UBERON:0009741 ! tailbud stage intersection_of: part_of NCBITaxon:8353 +[Term] +id: XAO:0004305 ! +property_value: IAO:0000589 "zona limitans intrathalamica (xenopus)" xsd:string +intersection_of: UBERON:0009848 ! zona limitans intrathalamica +intersection_of: part_of NCBITaxon:8353 + [Term] id: XAO:1000008 ! property_value: IAO:0000589 "tadpole stage (xenopus)" xsd:string diff --git a/bridge/uberon-bridge-to-xao.owl b/bridge/uberon-bridge-to-xao.owl index 381086a76f..6dafe5bd1f 100644 --- a/bridge/uberon-bridge-to-xao.owl +++ b/bridge/uberon-bridge-to-xao.owl @@ -20,7 +20,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -3606,6 +3606,12 @@ + + + + + + @@ -15262,6 +15268,26 @@ + + + + + + + + + + + + + + + XAO:0004305 + zona limitans intrathalamica (xenopus) + + + + diff --git a/bridge/uberon-bridge-to-zfa.obo b/bridge/uberon-bridge-to-zfa.obo index bce9c8824a..d780f1f0e4 100644 --- a/bridge/uberon-bridge-to-zfa.obo +++ b/bridge/uberon-bridge-to-zfa.obo @@ -1,5 +1,5 @@ ontology: uberon/bridge/uberon-bridge-to-zfa -data-version: 2013-12-15 +data-version: 2014-01-11 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI property_value: dc-title "Uberon bridge to zfa" xsd:string property_value: dc-description "Taxonomic equivalence axioms between ZFA and Uberon" xsd:string @@ -5520,8 +5520,8 @@ intersection_of: part_of NCBITaxon:7954 [Term] id: ZFA:0001644 ! -property_value: IAO:0000589 "articular cartilage condensation (zebrafish)" xsd:string -intersection_of: UBERON:0011002 ! articular cartilage condensation +property_value: IAO:0000589 "articular cartilage element (zebrafish)" xsd:string +intersection_of: UBERON:0011002 ! articular cartilage element intersection_of: part_of NCBITaxon:7954 [Term] diff --git a/bridge/uberon-bridge-to-zfa.owl b/bridge/uberon-bridge-to-zfa.owl index c88ca9a730..c7e2838737 100644 --- a/bridge/uberon-bridge-to-zfa.owl +++ b/bridge/uberon-bridge-to-zfa.owl @@ -21,7 +21,7 @@ http://purl.obolibrary.org/obo/uberon/references/reference_0000026 - + @@ -45090,7 +45090,7 @@ ZFA:0001644 - articular cartilage condensation (zebrafish) + articular cartilage element (zebrafish) diff --git a/chebi_import.owl b/chebi_import.owl index fb68b2742d..30f1d2a575 100644 --- a/chebi_import.owl +++ b/chebi_import.owl @@ -7,7 +7,7 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -380,13 +380,13 @@ - + - + diff --git a/diffs/def_diffs.rss b/diffs/def_diffs.rss index 299b477771..303fa3339a 100644 --- a/diffs/def_diffs.rss +++ b/diffs/def_diffs.rss @@ -6,203 +6,219 @@ http://geneontology.org/ RSS feed of definition changes in the uberon en - Sun, 15 Dec 2013 12:26:00 +0000 - Sun, 15 Dec 2013 12:26:00 +0000 + Sat, 11 Jan 2014 11:00:00 +0000 + Sat, 11 Jan 2014 11:00:00 +0000 webmaster@geneontology.org - UBERON:0000076 ; external ectoderm - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000076 + UBERON:0000642 ; suspensory ligament of duodenum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000642

OLD: The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]. -
NEW: the surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm.

-

AmiGO | QuickGO

]]> +

OLD: Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. +
NEW: A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery

+

AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000076 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000642
- UBERON:0000453 ; decidua basalis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000453 + UBERON:0002205 ; manubrium of sternum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002205

OLD: Region between the blastocyst and the myometrium. -
NEW: area of uterine endometrium found between the implanted chorionic vesicle and the myometrium.

-

AmiGO | QuickGO

]]> +

OLD: broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]. +
NEW: The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP].

+

AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000453 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002205
- UBERON:0007383 ; enveloping layer of ectoderm - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007383 + UBERON:0002390 ; hematopoietic system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002390

OLD: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. -
NEW: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm.

-

AmiGO | QuickGO

]]> +

OLD: The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]. +
NEW: Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes.

+

AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007383 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002390
- - UBERON:0007124 ; pharyngeal pouch 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007124 + + UBERON:0003054 ; roof plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003054

OLD: The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP]. The third pouch lies between the third and fourth arches[PMID]. -
NEW: A pharyngeal pouch that between pharyngeal arches 3 and 4.

-

AmiGO | QuickGO

]]> +

OLD: a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. +
NEW: a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells.

+

AmiGO | QuickGO

]]>
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007124 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003054
- - UBERON:0001835 ; lower lip - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001835 + UBERON:0003079 ; floor plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003079

OLD: Lip that covers the upper portion of the mouth.[TAO]. -
NEW: Lip that covers the lower portion of the mouth.[TAO].

-

AmiGO | QuickGO

]]> +

OLD: A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]. +
NEW: The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube.

+

AmiGO | QuickGO

]]>
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001835 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003079
- - UBERON:2002029 ; pectoral fin proximal radial bone 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002029 + UBERON:0004547 ; decidua capsularis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004547 (was pectoral fin proximal radial 4)

-

OLD: Pectoral fin proximal radial that is the fourth most anterior or dorsal pectoral fin radial. -
NEW: pectoral fin proximal radial 4 element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: Endometrium that covers the implanted blastocyst. +
NEW: The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002029 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004547
- - UBERON:2000268 ; anal fin proximal radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000268 + UBERON:0005070 ; anterior neuropore + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005070 (was anal fin proximal radial)

-

OLD: Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials. -
NEW: anal fin proximal radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: The anterior neuropore appears before the process of neural tube closure is complete[GO]. +
NEW: The neuropore at the anterior (rostral) end of the neural tube.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000268 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005070
- - UBERON:2000947 ; dorsal fin proximal radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000947 + UBERON:0005071 ; posterior neuropore + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005071 (was dorsal fin proximal radial)

-

OLD: Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials. -
NEW: dorsal fin proximal radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: The posterior neuropore appears before the process of neural tube closure is complete[GO]. +
NEW: The neuropore at the posterior (caudal) end of the neural tube.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000947 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005071
- - UBERON:0001155 ; colon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001155 + UBERON:0005077 ; neuropore + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005077

OLD: Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a> -
NEW: Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN].

-

AmiGO | QuickGO

]]> +

OLD: Joined neural folds at either end of the neural tube.[GO]. +
NEW: A temporary opening leading from the central canal of the embryonic neural tube to the exterior.

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001155 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005077
+ + UBERON:0005078 ; lamina terminalis of neural tube + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005078 + + (was lamina terminalis of forebrain vesicle)

+

OLD: The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development. +
NEW: The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon.

+

AmiGO | QuickGO

]]> +
+ Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005078 +
- UBERON:0001843 ; lateral semicircular canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001843 + UBERON:0005432 ; aortic sac + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005432

OLD: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) -
NEW: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration.

-

AmiGO | QuickGO

]]> +

OLD: the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]. +
NEW: The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001843 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005432
- - UBERON:0001840 ; semicircular canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001840 + UBERON:0006211 ; buccopharyngeal membrane + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006211

OLD: One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) -
NEW: One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations[ZFIN].

-

AmiGO | QuickGO

]]> +

OLD: The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area. +
NEW: The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx.

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001840 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006211
- - UBERON:0010901 ; tarsometatarsus pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010901 + UBERON:0009210 ; pharyngeal membrane + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009210

OLD: A pre-cartilage condensation that develops_into a tarsometatarsus. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus.

-

AmiGO | QuickGO

]]> +

OLD: a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo. +
NEW: a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010901 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009210 +
+ + UBERON:0010570 ; manual digit 1 metacarpus cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010570 + + (was manual digit 1 metacarpus cartilage condensation)

+

OLD: A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme. +
NEW: A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme.

+

AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010570
- UBERON:0005340 ; dorsal telencephalic commissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005340 + UBERON:0005866 ; pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005866

OLD: the fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP]. -
NEW: A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP].

-

AmiGO | QuickGO

]]> +

OLD: A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage. +
NEW: A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts.

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005340 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005866
- - UBERON:0008583 ; transverse muscle of tongue - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008583 + + UBERON:0000076 ; external ectoderm + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000076

OLD: The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. -
NEW: A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue.

-

AmiGO | QuickGO

]]> +

OLD: The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]. +
NEW: the surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008583 + Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000076
- UBERON:0004731 ; neuromere - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004731 + UBERON:0001155 ; colon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001155

OLD: A segment of the developing neural tube[MP]. A metameric segment of the central nervous system[ZFA]. morphologically or molecularly defined transient segments of the early developing brain. Rhombomeres are such segments that make up the rhombencephalon or hindbrain. [WP]. -
NEW: A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres).

-

AmiGO | QuickGO

]]> +

OLD: Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050120-6'>Wallace et al, 2005.</a> +
NEW: Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN].

+

AmiGO | QuickGO

]]>
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004731 + Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001155
@@ -218,19 +234,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004859 - - UBERON:0010850 ; tibia pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010850 - -

OLD: A pre-cartilage condensation that develops_into a tibia. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tibia.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010850 -
- UBERON:0006539 ; mammary gland fluid/secretion http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006539 @@ -258,16 +261,16 @@ - UBERON:0005904 ; duct of male reproductive system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005904 + UBERON:0010850 ; tibia pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010850

OLD: A duct that is part of a male reproductive system. -
NEW: Any of the ducts that are part of a male reproductive system.

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a tibia. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tibia.

+

AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005904 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010850
@@ -283,6 +286,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010541 + + UBERON:0005904 ; duct of male reproductive system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005904 + +

OLD: A duct that is part of a male reproductive system. +
NEW: Any of the ducts that are part of a male reproductive system.

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005904 +
+ UBERON:0003886 ; body cavity precursor http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003886 @@ -296,6 +312,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003886 + + UBERON:0001791 ; inner nuclear layer of retina + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001791 + +

OLD: The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells. +
NEW: Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia).

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001791 +
+ UBERON:0007286 ; presumptive floor plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007286 @@ -310,16 +339,16 @@ - UBERON:0001791 ; inner nuclear layer of retina - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001791 + UBERON:0005349 ; paramedian lobule + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005349

OLD: The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells. -
NEW: Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia).

-

AmiGO | QuickGO

]]> +

OLD: .[MP]. +
NEW: the anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001791 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005349
@@ -336,16 +365,43 @@ - UBERON:0005349 ; paramedian lobule - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005349 + UBERON:2002029 ; pectoral fin proximal radial bone 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002029

OLD: .[MP]. -
NEW: the anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis.

-

AmiGO | QuickGO

]]> +

(was pectoral fin proximal radial 4)

+

OLD: Pectoral fin proximal radial that is the fourth most anterior or dorsal pectoral fin radial. +
NEW: pectoral fin proximal radial 4 element that is composed of bone tissue.

+

AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005349 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002029 +
+ + + UBERON:0008583 ; transverse muscle of tongue + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008583 + +

OLD: The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. +
NEW: A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue.

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008583 +
+ + + UBERON:0004731 ; neuromere + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004731 + +

OLD: A segment of the developing neural tube[MP]. A metameric segment of the central nervous system[ZFA]. morphologically or molecularly defined transient segments of the early developing brain. Rhombomeres are such segments that make up the rhombencephalon or hindbrain. [WP]. +
NEW: A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres).

+

AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004731
@@ -414,42 +470,29 @@ - UBERON:0001396 ; lateral thoracic artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001396 + UBERON:0002473 ; intercerebral commissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002473

OLD: In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]. -
NEW: In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001396 -
- - - UBERON:0001873 ; caudate nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001873 - -

OLD: Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent. -
NEW: Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species.

-

AmiGO | QuickGO

]]> +

OLD: Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]. +
NEW: A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001873 + Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002473
- UBERON:0002473 ; intercerebral commissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002473 + UBERON:0001396 ; lateral thoracic artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001396

OLD: Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]. -
NEW: A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum.

-

AmiGO | QuickGO

]]> +

OLD: In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]. +
NEW: In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted].

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002473 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001396
@@ -465,6 +508,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007255 + + UBERON:0001873 ; caudate nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001873 + +

OLD: Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent. +
NEW: Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001873 +
+ UBERON:0002413 ; cervical vertebra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002413 @@ -491,6 +547,33 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003614 + + UBERON:2000268 ; anal fin proximal radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000268 + + (was anal fin proximal radial)

+

OLD: Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials. +
NEW: anal fin proximal radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000268 +
+ + + UBERON:0001843 ; lateral semicircular canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001843 + +

OLD: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) +
NEW: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration.

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001843 +
+ UBERON:0001617 ; mental artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001617 @@ -517,6 +600,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001893 + + UBERON:0001840 ; semicircular canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001840 + +

OLD: One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) +
NEW: One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations[ZFIN].

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001840 +
+ + + UBERON:0010901 ; tarsometatarsus pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010901 + +

OLD: A pre-cartilage condensation that develops_into a tarsometatarsus. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010901 +
+ UBERON:0002289 ; midbrain cerebral aqueduct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002289 @@ -531,16 +640,43 @@ - UBERON:0010851 ; fibula cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010851 + UBERON:2000947 ; dorsal fin proximal radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000947

OLD: A cartilaginous condensation that develops_into a fibula. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a fibula.

-

AmiGO | QuickGO

]]> +

(was dorsal fin proximal radial)

+

OLD: Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials. +
NEW: dorsal fin proximal radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000947 +
+ + + UBERON:0005340 ; dorsal telencephalic commissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005340 + +

OLD: the fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP]. +
NEW: A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP].

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005340 +
+ + + UBERON:0010124 ; future inferior salivatory nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010124 + +

OLD: A gray matter of neuraxis that develops_into a inferior salivatory nucleus. +
NEW: A gray matter of neuraxis that has_potential_to_develop_into a inferior salivatory nucleus.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010851 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010124
@@ -570,6 +706,59 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001082 + + UBERON:0010851 ; fibula cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010851 + +

OLD: A cartilaginous condensation that develops_into a fibula. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a fibula.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010851 +
+ + + UBERON:0010574 ; manual digit 5 metacarpus cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010574 + + (was manual digit 5 metacarpus cartilage condensation)

+

OLD: A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme. +
NEW: A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme.

+

AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010574 +
+ + + UBERON:0007124 ; pharyngeal pouch 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007124 + +

OLD: The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP]. The third pouch lies between the third and fourth arches[PMID]. +
NEW: A pharyngeal pouch that between pharyngeal arches 3 and 4.

+

AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007124 +
+ + + UBERON:0001835 ; lower lip + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001835 + +

OLD: Lip that covers the upper portion of the mouth.[TAO]. +
NEW: Lip that covers the lower portion of the mouth.[TAO].

+

AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001835 +
+ UBERON:0002336 ; corpus callosum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002336 @@ -583,19 +772,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002336 - - UBERON:0010124 ; future inferior salivatory nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010124 - -

OLD: A gray matter of neuraxis that develops_into a inferior salivatory nucleus. -
NEW: A gray matter of neuraxis that has_potential_to_develop_into a inferior salivatory nucleus.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010124 -
- UBERON:0006871 ; footplate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006871 @@ -610,19 +786,19 @@ - UBERON:0003856 ; odontogenic mesenchyme - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003856 + UBERON:4200062 ; epichordal lepidotrichium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200062

OLD: Mesenchyme that gives rise to an odontogenic papilla. -
NEW: Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla.

-

AmiGO | QuickGO

]]> +

OLD: lepidotrichium located upon or above the notochord. +
NEW: Caudal fin lepidotrichium located upon or above the notochord.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003856 + Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200062
- + UBERON:0001377 ; quadriceps femoris http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001377 @@ -636,19 +812,6 @@ - UBERON:4200062 ; epichordal lepidotrichium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200062 - -

OLD: lepidotrichium located upon or above the notochord. -
NEW: Caudal fin lepidotrichium located upon or above the notochord.

-

AmiGO | QuickGO

]]> -
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200062 -
- - UBERON:0002261 ; dorsal root of spinal cord http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002261 @@ -662,29 +825,16 @@ - UBERON:0008278 ; nematocyst - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008278 - -

OLD: One of the stinging organelles of coelenterates used in catching prey. -
NEW: A cnida that is harpoon-like in structure and is capable of penetrating prey.

-

AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008278 -
- - - UBERON:0010115 ; future dura mater - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010115 + UBERON:0003856 ; odontogenic mesenchyme + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003856

OLD: A meninx that develops_into a dura mater. -
NEW: A meninx that has_potential_to_develop_into a dura mater.

-

AmiGO | QuickGO

]]> +

OLD: Mesenchyme that gives rise to an odontogenic papilla. +
NEW: Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010115 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003856
@@ -701,16 +851,16 @@ - UBERON:0002363 ; dura mater - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002363 - + UBERON:0008278 ; nematocyst + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008278 +

OLD: the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid. -
NEW: Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections.

-

AmiGO | QuickGO

]]> +

OLD: One of the stinging organelles of coelenterates used in catching prey. +
NEW: A cnida that is harpoon-like in structure and is capable of penetrating prey.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002363 + Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008278
@@ -728,29 +878,17 @@ - UBERON:0000478 ; extraembryonic structure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000478 - -

OLD: Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. -
NEW: A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis.

-

AmiGO | QuickGO

]]> -
- Wed, 28 Aug 2013 15:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000478 -
- - - UBERON:0001966 ; substantia nigra pars reticulata - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001966 + UBERON:0010559 ; pedal digit 3 metatarsal cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010559

OLD: Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]. -
NEW: Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM).

-

AmiGO | QuickGO

]]> +

(was pedal digit 3 metatarsal cartilage condensation)

+

OLD: A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme. +
NEW: A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001966 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010559
@@ -766,6 +904,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004534 + + UBERON:0007125 ; pharyngeal pouch 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007125 + +

OLD: A pouch that is situated between the 4th and 5th pharyngeal arch[Bard]. Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP] +
NEW: A pharyngeal pouch between pharyngeal arches 4 and 5

+

AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007125 +
+ UBERON:0002133 ; atrioventricular valve http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002133 @@ -779,6 +930,58 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002133 + + UBERON:0010115 ; future dura mater + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010115 + +

OLD: A meninx that develops_into a dura mater. +
NEW: A meninx that has_potential_to_develop_into a dura mater.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010115 +
+ + + UBERON:0002363 ; dura mater + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002363 + +

OLD: the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid. +
NEW: Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002363 +
+ + + UBERON:0000478 ; extraembryonic structure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000478 + +

OLD: Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. +
NEW: A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis.

+

AmiGO | QuickGO

]]> +
+ Wed, 28 Aug 2013 15:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000478 +
+ + + UBERON:0001966 ; substantia nigra pars reticulata + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001966 + +

OLD: Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]. +
NEW: Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM).

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001966 +
+ UBERON:0011118 ; tarsometatarsal joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011118 @@ -858,19 +1061,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004480 - - UBERON:0007125 ; pharyngeal pouch 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007125 - -

OLD: A pouch that is situated between the 4th and 5th pharyngeal arch[Bard]. Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP] -
NEW: A pharyngeal pouch between pharyngeal arches 4 and 5

-

AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007125 -
- UBERON:0002196 ; adenohypophysis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002196 @@ -884,19 +1074,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002196 - - UBERON:0010882 ; limb bone pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010882 - -

OLD: A pre-cartilage condensation that develops_into a limb bone. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a limb bone.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010882 -
- UBERON:0002613 ; globose nucleus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002613 @@ -910,6 +1087,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002613 + + UBERON:0010882 ; limb bone pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010882 + +

OLD: A pre-cartilage condensation that develops_into a limb bone. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a limb bone.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010882 +
+ UBERON:0009643 ; central tegmental tract http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009643 @@ -936,19 +1126,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011172 - - UBERON:0005480 ; superior orbital fissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005480 - -

OLD: The superior orbital fissure is a foramen in the skull, although strictly it is more of a cleft, lying between the lesser and greater wings of the sphenoid bone. -
NEW: The orbital fissure that is situated superiorly between the greater wing and the lesser wing of the sphenoid bone

-

AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005480 -
- UBERON:0004469 ; musculature of back http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004469 @@ -962,19 +1139,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004469 - - UBERON:0004489 ; musculature of manus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004489 - -

OLD: A musculature that is part of a manus [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a manus [Automatically generated definition].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004489 -
- UBERON:0003986 ; minor sublingual duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003986 @@ -1028,6 +1192,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002741 + + UBERON:0002314 ; midbrain tectum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002314 + +

OLD: Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]. +
NEW: Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002314 +
+ UBERON:0008427 ; transverse foramen of axis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008427 @@ -1042,16 +1219,16 @@ - UBERON:0002314 ; midbrain tectum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002314 + UBERON:0004489 ; musculature of manus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004489

OLD: Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]. -
NEW: Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM).

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a manus [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a manus [Automatically generated definition].

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002314 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004489
@@ -1067,6 +1244,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001882 + + UBERON:0001578 ; orbicularis oculi + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001578 + +

OLD: The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. +
NEW: A circumorbital muscle in the face that closes the eyelid[HP]. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted].

+

AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001578 +
+ + + UBERON:0005480 ; superior orbital fissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005480 + +

OLD: The superior orbital fissure is a foramen in the skull, although strictly it is more of a cleft, lying between the lesser and greater wings of the sphenoid bone. +
NEW: The orbital fissure that is situated superiorly between the greater wing and the lesser wing of the sphenoid bone

+

AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005480 +
+ UBERON:0007282 ; presumptive segmental plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007282 @@ -1093,19 +1296,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004141 - - UBERON:0001578 ; orbicularis oculi - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001578 - -

OLD: The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. -
NEW: A circumorbital muscle in the face that closes the eyelid[HP]. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted].

-

AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001578 -
- UBERON:0000936 ; posterior commissure http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000936 @@ -1119,19 +1309,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000936 - - UBERON:0012081 ; patella pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012081 - -

OLD: A pre-cartilage condensation that develops_into a patella. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a patella.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012081 -
- UBERON:0004461 ; musculature of head http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004461 @@ -1146,16 +1323,16 @@ - UBERON:0003852 ; rhombencephalon neural crest - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003852 + UBERON:0012081 ; patella pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012081

OLD: A neural crest that developmentally_contributes_to a hindbrain. -
NEW: A neural crest that has_potential_to_developmentally_contribute_to a hindbrain.

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a patella. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a patella.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003852 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012081
@@ -1173,8 +1350,34 @@ - UBERON:0002368 ; endocrine gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002368 + UBERON:0000317 ; colonic mucosa + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000317 + +

OLD: A mucosa that is part of a colon [Automatically generated definition]. +
NEW: Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells.

+

AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000317 +
+ + + UBERON:0003852 ; rhombencephalon neural crest + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003852 + +

OLD: A neural crest that developmentally_contributes_to a hindbrain. +
NEW: A neural crest that has_potential_to_developmentally_contribute_to a hindbrain.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003852 +
+ + + UBERON:0002368 ; endocrine gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002368

OLD: Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]. @@ -1199,16 +1402,16 @@ - UBERON:0000317 ; colonic mucosa - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000317 + UBERON:0004479 ; musculature of trunk + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004479

OLD: A mucosa that is part of a colon [Automatically generated definition]. -
NEW: Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a trunk [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a trunk [Automatically generated definition].

+

AmiGO | QuickGO

]]>
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000317 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004479
@@ -1225,32 +1428,19 @@ - UBERON:0004479 ; musculature of trunk - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004479 - -

OLD: A musculature that is part of a trunk [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a trunk [Automatically generated definition].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004479 -
- - - UBERON:0011370 ; transverse process of atlas - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011370 + UBERON:0009889 ; secondary heart field + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009889

OLD: A transverse process of vertebra that is part of a cervical vertebra 1. -
NEW: A transverse process of vertebra that is part of a vertebral bone 1.

-

AmiGO | QuickGO

]]> +

OLD: extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract. +
NEW: A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract).

+

AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011370 + Tue, 19 Nov 2013 19:49:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009889
- + UBERON:1500006 ; paired fin radial bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500006 @@ -1278,29 +1468,16 @@ - UBERON:0009889 ; secondary heart field - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009889 - -

OLD: extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract. -
NEW: A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract).

-

AmiGO | QuickGO

]]> -
- Tue, 19 Nov 2013 19:49:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009889 -
- - - UBERON:0001795 ; inner plexiform layer of retina - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001795 + UBERON:0011370 ; transverse process of atlas + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011370

OLD: The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]. -
NEW: Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)

-

AmiGO | QuickGO

]]> +

OLD: A transverse process of vertebra that is part of a cervical vertebra 1. +
NEW: A transverse process of vertebra that is part of a vertebral bone 1.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001795 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011370
@@ -1317,29 +1494,29 @@ - UBERON:0010883 ; forelimb bone cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010883 + UBERON:0001795 ; inner plexiform layer of retina + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001795

OLD: A cartilaginous condensation that develops_into a forelimb bone. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a forelimb bone.

-

AmiGO | QuickGO

]]> +

OLD: The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]. +
NEW: Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia)

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010883 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001795
- UBERON:0007288 ; presumptive forebrain midbrain boundary - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007288 + UBERON:0010883 ; forelimb bone cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010883

OLD: A presumptive structure that develops_into a forebrain-midbrain boundary. -
NEW: A presumptive structure that has_potential_to_develop_into a forebrain-midbrain boundary.

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a forelimb bone. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a forelimb bone.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007288 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010883
@@ -1356,29 +1533,16 @@ - UBERON:0004466 ; musculature of leg - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004466 - -

OLD: A musculature that is part of a lower leg or upper leg [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004466 -
- - - UBERON:0000955 ; brain - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000955 + UBERON:0007288 ; presumptive forebrain midbrain boundary + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007288

OLD: The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. -
NEW: The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP].

-

AmiGO | QuickGO

]]> +

OLD: A presumptive structure that develops_into a forebrain-midbrain boundary. +
NEW: A presumptive structure that has_potential_to_develop_into a forebrain-midbrain boundary.

+

AmiGO | QuickGO

]]>
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000955 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007288
@@ -1394,6 +1558,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001895 + + UBERON:0000955 ; brain + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000955 + +

OLD: The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. +
NEW: The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP].

+

AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000955 +
+ UBERON:0005174 ; dorsal region organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005174 @@ -1409,69 +1586,17 @@ - UBERON:0008426 ; transverse foramen of atlas - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008426 - -

OLD: A transverse foramen that is part of a cervical vertebra 1. -
NEW: A transverse foramen that is part of a vertebral bone 1.

-

AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008426 -
- - - UBERON:0004714 ; septum pellucidum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004714 - -

OLD: The septum pellucidum is made up of two thin sheets of mostly glial-like elements that abut each other in the midline and have a potential space between them. Those sheets also separate the left and right lateral ventricles from each other. At the base of the sheets rostrally, however, are the septal nuclei, which are important components of the limbic system.a thin, triangular, vertical membrane separating the lateral ventricles of the brain. It separates the anterior horn of the left and right lateral ventricles. It runs as a sheet from the corpus callosum down to the fornix. When the hemispheres are cut apart, the septum remains on one hemisphere, usually the left. The septum pellucidum is implicated in pleasure, mood, rage, sexual gratification and more. Lesions of the septum lead to sham rage. Stimulation of the medial forebrain bundle (primary efferent of the septum) restores normal behavior. -
NEW: A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004714 -
- - - UBERON:0007123 ; pharyngeal pouch 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007123 - -

OLD: The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP] -
NEW: A pharyngeal puch that is between the pharyngeal arches 2 and 3.

-

AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007123 -
- - - UBERON:0002420 ; basal ganglion - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002420 - -

OLD: one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]. -
NEW: An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified].

-

AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002420 -
- - - UBERON:0004140 ; primary heart field - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004140 + UBERON:0010571 ; manual digit 2 metacarpus cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010571 (was heart field)

-

OLD: a specific region of the lateral mesoderm in which the heart will develop. -
NEW: A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle.

-

AmiGO | QuickGO

]]> +

(was manual digit 2 metacarpus cartilage condensation)

+

OLD: A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme. +
NEW: A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme.

+

AmiGO | QuickGO

]]>
- Tue, 19 Nov 2013 19:49:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004140 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010571
@@ -1489,17 +1614,16 @@ - UBERON:2001587 ; pectoral fin proximal radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001587 + UBERON:4200110 ; prepectoral spine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200110 (was pectoral fin proximal radial)

-

OLD: Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid). -
NEW: pectoral fin proximal radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: Fin spine located anterior to the pectoral fin +
NEW: Spine located anterior to the pectoral fin

+

AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001587 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200110
@@ -1516,42 +1640,81 @@ - UBERON:0006213 ; carpus cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006213 + UBERON:0014778 ; cell group + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778

OLD: A cartilaginous condensation that develops_into a carpal bone. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a carpal bone.

-

AmiGO | QuickGO

]]> +

OLD: A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala +
NEW: A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO)

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006213 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778
- UBERON:0008777 ; hypaxial musclulature - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008777 + UBERON:0004466 ; musculature of leg + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004466

OLD: trunk muscles that lie ventral to the horizontal septum of the vertebrae. -
NEW: Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a lower leg or upper leg [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004466 +
+ + + UBERON:0004714 ; septum pellucidum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004714 + +

OLD: The septum pellucidum is made up of two thin sheets of mostly glial-like elements that abut each other in the midline and have a potential space between them. Those sheets also separate the left and right lateral ventricles from each other. At the base of the sheets rostrally, however, are the septal nuclei, which are important components of the limbic system.a thin, triangular, vertical membrane separating the lateral ventricles of the brain. It separates the anterior horn of the left and right lateral ventricles. It runs as a sheet from the corpus callosum down to the fornix. When the hemispheres are cut apart, the septum remains on one hemisphere, usually the left. The septum pellucidum is implicated in pleasure, mood, rage, sexual gratification and more. Lesions of the septum lead to sham rage. Stimulation of the medial forebrain bundle (primary efferent of the septum) restores normal behavior. +
NEW: A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004714 +
+ + + UBERON:0008426 ; transverse foramen of atlas + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008426 + +

OLD: A transverse foramen that is part of a cervical vertebra 1. +
NEW: A transverse foramen that is part of a vertebral bone 1.

+

AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008426 +
+ + + UBERON:0008777 ; hypaxial musclulature + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008777 + +

OLD: trunk muscles that lie ventral to the horizontal septum of the vertebrae. +
NEW: Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles.

+

AmiGO | QuickGO

]]>
Wed, 22 May 2013 21:07:08 +0000 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008777
- UBERON:4200110 ; prepectoral spine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200110 + UBERON:0006213 ; carpus cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006213

OLD: Fin spine located anterior to the pectoral fin -
NEW: Spine located anterior to the pectoral fin

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a carpal bone. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a carpal bone.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200110 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006213
@@ -1567,19 +1730,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005413 - - UBERON:0014778 ; cell group - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 - -

OLD: A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala -
NEW: A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO)

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 -
- UBERON:0001792 ; ganglionic layer of retina http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001792 @@ -1593,20 +1743,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001792 - - UBERON:2000271 ; radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000271 - - (was radial)

-

OLD: Radials are the internal skeletal supports of the median and paired fins. -
NEW: radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000271 -
- UBERON:0000930 ; stomodeum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000930 @@ -1633,6 +1769,47 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000475 + + UBERON:0002420 ; basal ganglion + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002420 + +

OLD: one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]. +
NEW: An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified].

+

AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002420 +
+ + + UBERON:2000271 ; radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000271 + + (was radial)

+

OLD: Radials are the internal skeletal supports of the median and paired fins. +
NEW: radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000271 +
+ + + UBERON:2001587 ; pectoral fin proximal radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001587 + + (was pectoral fin proximal radial)

+

OLD: Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid). +
NEW: pectoral fin proximal radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001587 +
+ UBERON:0002072 ; hypodermis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002072 @@ -1699,32 +1876,6 @@ - UBERON:0006239 ; future central tendon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006239 - -

OLD: A tendon that develops_into a central tendon. -
NEW: A tendon that has_potential_to_develop_into a central tendon.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006239 -
- - - UBERON:0003980 ; cerebellum fissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003980 - -

OLD: the deep furrows which divide the lobules of the cerebellum, including the postcentral, primary and secondary furrows -
NEW: One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows

-

AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003980 -
- - UBERON:2005225 ; median fin radial bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005225 @@ -1739,16 +1890,16 @@ - UBERON:0010846 ; radius pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010846 + UBERON:0006239 ; future central tendon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006239

OLD: A pre-cartilage condensation that develops_into a radius bone. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a radius bone.

-

AmiGO | QuickGO

]]> +

OLD: A tendon that develops_into a central tendon. +
NEW: A tendon that has_potential_to_develop_into a central tendon.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010846 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006239
@@ -1765,42 +1916,42 @@ - UBERON:0000451 ; prefrontal cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000451 + UBERON:0010846 ; radius pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010846

OLD: The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]. -
NEW: The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a radius bone. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a radius bone.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000451 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010846
- UBERON:0004463 ; musculature of hindlimb stylopod - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004463 + UBERON:0003980 ; cerebellum fissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003980

OLD: A musculature that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]. -
NEW: Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition].

-

AmiGO | QuickGO

]]> +

OLD: the deep furrows which divide the lobules of the cerebellum, including the postcentral, primary and secondary furrows +
NEW: One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004463 + Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003980
- UBERON:0005181 ; thoracic segment organ - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005181 + UBERON:0000451 ; prefrontal cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000451

OLD: An organ that is part of a thoracic segment of trunk. -
NEW: An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions.

-

AmiGO | QuickGO

]]> +

OLD: The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]. +
NEW: The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia

+

AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005181 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000451
@@ -1829,6 +1980,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005731 + + UBERON:0006875 ; handplate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006875 + +

OLD: An autopod plate that develops_into a manus. +
NEW: An autopod plate that has_potential_to_develop_into a manus.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006875 +
+ + + UBERON:0004463 ; musculature of hindlimb stylopod + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004463 + +

OLD: A musculature that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]. +
NEW: Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004463 +
+ UBERON:0008776 ; inner cell mass derived hypoblast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008776 @@ -1842,6 +2019,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008776 + + UBERON:0005181 ; thoracic segment organ + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005181 + +

OLD: An organ that is part of a thoracic segment of trunk. +
NEW: An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions.

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005181 +
+ + + UBERON:0008881 ; rostral migratory stream + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008881 + +

OLD: Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb[NIF]. In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO]. the transient structure formed by neurons migrating from the subventricular zone into the olfactory bulbs[MP] The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP] +
NEW: Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008881 +
+ UBERON:0002190 ; subcutaneous adipose tissue http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002190 @@ -1856,29 +2059,29 @@ - UBERON:0006875 ; handplate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006875 + UBERON:0006286 ; radius cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006286

OLD: An autopod plate that develops_into a manus. -
NEW: An autopod plate that has_potential_to_develop_into a manus.

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a radius bone. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a radius bone.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006875 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006286
- UBERON:0008881 ; rostral migratory stream - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008881 + UBERON:0002459 ; inferior palpebral vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002459

OLD: Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb[NIF]. In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO]. the transient structure formed by neurons migrating from the subventricular zone into the olfactory bulbs[MP] The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP] -
NEW: Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb.

-

AmiGO | QuickGO

]]> +

OLD: The blood vessels that drain blood from the inferior eyelid into the angular vein. +
NEW: A blood vessel that drains from from an lower eyelid.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008881 + Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002459
@@ -1907,32 +2110,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002549 - - UBERON:0006286 ; radius cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006286 - -

OLD: A cartilaginous condensation that develops_into a radius bone. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a radius bone.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006286 -
- - - UBERON:0002459 ; inferior palpebral vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002459 - -

OLD: The blood vessels that drain blood from the inferior eyelid into the angular vein. -
NEW: A blood vessel that drains from from an lower eyelid.

-

AmiGO | QuickGO

]]> -
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002459 -
- UBERON:0010125 ; future superior salivatory nucleus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010125 @@ -1960,6 +2137,19 @@ + UBERON:0002538 ; hatching gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002538 + +

OLD: The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a> +
NEW: The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland.

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002538 +
+ + UBERON:0004481 ; musculature of upper limb http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004481 @@ -1972,6 +2162,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004481 + + UBERON:0004164 ; branchiomeric muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004164 + +

OLD: The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]. +
NEW: A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves.

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004164 +
+ UBERON:0006696 ; mammillothalamic axonal tract http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006696 @@ -1985,19 +2188,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006696 - - UBERON:0002538 ; hatching gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002538 - -

OLD: The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a> -
NEW: The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland.

-

AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002538 -
- UBERON:0002266 ; anterior olfactory nucleus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002266 @@ -2011,19 +2201,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002266 - - UBERON:0001945 ; superior colliculus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001945 - -

OLD: Part of the midbrain tectum consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of superior colliculus [Wikipedia.org and Neuronames (MM)]. -
NEW: Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001945 -
- UBERON:0009553 ; distal segment of pedal digit http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009553 @@ -2051,29 +2228,16 @@ - UBERON:0004164 ; branchiomeric muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004164 - -

OLD: The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]. -
NEW: A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves.

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004164 -
- - - UBERON:0010092 ; future metencephalon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010092 + UBERON:0001945 ; superior colliculus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001945

OLD: A developing anatomical structure that develops_into a metencephalon. -
NEW: A developing anatomical structure that has_potential_to_develop_into a metencephalon.

-

AmiGO | QuickGO

]]> +

OLD: Part of the midbrain tectum consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of superior colliculus [Wikipedia.org and Neuronames (MM)]. +
NEW: Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010092 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001945
@@ -2102,6 +2266,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002439 + + UBERON:0010092 ; future metencephalon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010092 + +

OLD: A developing anatomical structure that develops_into a metencephalon. +
NEW: A developing anatomical structure that has_potential_to_develop_into a metencephalon.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010092 +
+ UBERON:0000124 ; epineurium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000124 @@ -2116,29 +2293,57 @@ - UBERON:0011163 ; supraoccipital pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011163 + UBERON:0010558 ; pedal digit 2 metatarsal cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010558

OLD: A pre-cartilage condensation that develops_into a supraoccipital bone. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a supraoccipital bone.

-

AmiGO | QuickGO

]]> +

(was pedal digit 2 metatarsal cartilage condensation)

+

OLD: A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme. +
NEW: A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011163 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010558
- UBERON:0004474 ; musculature of arm - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004474 + UBERON:0007383 ; enveloping layer of ectoderm + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007383

OLD: A musculature that is part of an arm [Automatically generated definition]. -
NEW: Any collection of muscles that is part of an arm [Automatically generated definition].

-

AmiGO | QuickGO

]]> +

OLD: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. +
NEW: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004474 + Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007383 +
+ + + UBERON:0006820 ; body of sternum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006820 + +

OLD: The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end. +
NEW: The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end.

+

AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006820 +
+ + + UBERON:0004140 ; primary heart field + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004140 + + (was heart field)

+

OLD: a specific region of the lateral mesoderm in which the heart will develop. +
NEW: A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle.

+

AmiGO | QuickGO

]]> +
+ Tue, 19 Nov 2013 19:49:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004140
@@ -2169,111 +2374,137 @@ - UBERON:0007279 ; presumptive atrioventricular canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007279 + UBERON:0001271 ; pelvic girdle region + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001271

OLD: A presumptive structure that develops_into a atrioventricular canal. -
NEW: A presumptive structure that has_potential_to_develop_into a atrioventricular canal.

-

AmiGO | QuickGO

]]> +

OLD: Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions. +
NEW: Subdivision of lower limb or fin which links the paired limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007279 + Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001271
- UBERON:0011914 ; pubioischiotibialis muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011914 + UBERON:0002298 ; brainstem + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002298

OLD: A muscle of lower tetrapods that covers musch of the lower thing and retracts it. Homologous to mammalian gracilis -
NEW: A muscle of lower tetrapods that covers much of the lower leg and retracts it. Homologous to mammalian gracilis

-

AmiGO | QuickGO

]]> +

OLD: Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted]. +
NEW: Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011914 + Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002298
- - UBERON:0006846 ; surface groove - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006846 + + UBERON:0001675 ; trigeminal ganglion + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001675 (was groove)

-

OLD: Anatomical line that delineates a furrow or depression in an organ or tissue. -
NEW: A furrow or an incomplete tube.

-

AmiGO | QuickGO

]]> +

OLD: A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a> +
NEW: A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear.

+

AmiGO | QuickGO

]]>
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006846 + Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001675
- - UBERON:0002476 ; lateral globus pallidus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002476 + + UBERON:0011163 ; supraoccipital pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011163

OLD: The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]. -
NEW: The more lateral of the two segments of the globus pallidus, abutting the putamen

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a supraoccipital bone. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a supraoccipital bone.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002476 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011163
- UBERON:0011827 ; areolar gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011827 - + UBERON:0007279 ; presumptive atrioventricular canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007279 +

OLD: Lobular organ the parenchyma of which consists of acini connected to the surface of the areola or to a lactiferous duct by the duct of areolar gland. Examples: There are variable numbers of areolar glands. -
NEW: A sebaceous glands in the areola surrounding the nipple.

-

AmiGO | QuickGO

]]> +

OLD: A presumptive structure that develops_into a atrioventricular canal. +
NEW: A presumptive structure that has_potential_to_develop_into a atrioventricular canal.

+

AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:36 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011827 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007279
- - UBERON:0001271 ; pelvic girdle region - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001271 + + UBERON:0004474 ; musculature of arm + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004474

OLD: Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions. -
NEW: Subdivision of lower limb or fin which links the paired limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of an arm [Automatically generated definition]. +
NEW: Any collection of muscles that is part of an arm [Automatically generated definition].

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001271 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004474
- UBERON:0002298 ; brainstem - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002298 + UBERON:0011914 ; pubioischiotibialis muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011914

OLD: Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted]. -
NEW: Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].

-

AmiGO | QuickGO

]]> +

OLD: A muscle of lower tetrapods that covers musch of the lower thing and retracts it. Homologous to mammalian gracilis +
NEW: A muscle of lower tetrapods that covers much of the lower leg and retracts it. Homologous to mammalian gracilis

+

AmiGO | QuickGO

]]>
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002298 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011914
- - UBERON:0001675 ; trigeminal ganglion - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001675 + + UBERON:0006846 ; surface groove + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006846

OLD: A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-961014-576'>Kimmel et al, 1995.</a> -
NEW: A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear.

-

AmiGO | QuickGO

]]> +

(was groove)

+

OLD: Anatomical line that delineates a furrow or depression in an organ or tissue. +
NEW: A furrow or an incomplete tube.

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001675 + Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006846 +
+ + + UBERON:0002476 ; lateral globus pallidus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002476 + +

OLD: The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]. +
NEW: The more lateral of the two segments of the globus pallidus, abutting the putamen

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002476
+ UBERON:0011827 ; areolar gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011827 + +

OLD: Lobular organ the parenchyma of which consists of acini connected to the surface of the areola or to a lactiferous duct by the duct of areolar gland. Examples: There are variable numbers of areolar glands. +
NEW: A sebaceous glands in the areola surrounding the nipple.

+

AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:36 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011827 +
+ + UBERON:0002342 ; neural crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002342 @@ -2299,6 +2530,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003090 + + UBERON:0004470 ; musculature of pelvic girdle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004470 + +

OLD: A musculature that is part of a pelvic girdle [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a pelvic girdle [Automatically generated definition].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004470 +
+ UBERON:0001965 ; substantia nigra pars compacta http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001965 @@ -2312,6 +2556,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001965 + + UBERON:0007123 ; pharyngeal pouch 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007123 + +

OLD: The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP] +
NEW: A pharyngeal puch that is between the pharyngeal arches 2 and 3.

+

AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007123 +
+ UBERON:0006238 ; future brain http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006238 @@ -2338,19 +2595,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009002 - - UBERON:0004470 ; musculature of pelvic girdle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004470 - -

OLD: A musculature that is part of a pelvic girdle [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a pelvic girdle [Automatically generated definition].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004470 -
- UBERON:0000012 ; somatic nervous system http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000012 @@ -2364,19 +2608,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000012 - - UBERON:0009767 ; proximal interphalangeal joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009767 - -

OLD: An inter-phalangeal joint that connects a proximal phalanx. -
NEW: An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009767 -
- UBERON:0006334 ; posterior lateral line http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006334 @@ -2403,6 +2634,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003851 + + UBERON:0006306 ; ulna cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006306 + +

OLD: A cartilaginous condensation that develops_into a ulna. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a ulna.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006306 +
+ UBERON:0000409 ; serous gland http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000409 @@ -2417,16 +2661,16 @@ - UBERON:0006306 ; ulna cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006306 + UBERON:0009767 ; proximal interphalangeal joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009767

OLD: A cartilaginous condensation that develops_into a ulna. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a ulna.

-

AmiGO | QuickGO

]]> +

OLD: An inter-phalangeal joint that connects a proximal phalanx. +
NEW: An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006306 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009767
@@ -2443,55 +2687,55 @@ - UBERON:0009558 ; pastern bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009558 + UBERON:0010881 ; limb bone cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010881

OLD: A bone that is part of the pastern region of a horse limb. -
NEW: A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3.

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a limb bone. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a limb bone.

+

AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009558 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010881
- UBERON:0007122 ; pharyngeal pouch 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007122 + UBERON:0005729 ; pectoral appendage field + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005729

OLD: The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID] -
NEW: A pharyngeal pouch that is between pharyngeal arches 1 and 2.

-

AmiGO | QuickGO

]]> +

OLD: A limb/fin field that develops_into a pectoral appendage bud mesenchyme. +
NEW: A limb/fin field that has_potential_to_develop_into a pectoral appendage bud mesenchyme.

+

AmiGO | QuickGO

]]>
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007122 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005729
- UBERON:0006820 ; body of sternum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006820 + UBERON:0010011 ; collection of basal ganglia + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010011

OLD: The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end. -
NEW: The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end.

-

AmiGO | QuickGO

]]> +

OLD: Clusters of neurons comprising the globus pallidus, putamen, caudate, nucleus accumbens, substantia nigra and subthalamic nucleus. They are involved with high level aspects of inhibitory motor activity in coordination with the excitation commands issued from the cerebellum. +
NEW: Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum.

+

AmiGO | QuickGO

]]>
Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006820 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010011
- - UBERON:0010881 ; limb bone cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010881 + + UBERON:0007270 ; pelvic appendage musculature + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007270

OLD: A cartilaginous condensation that develops_into a limb bone. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a limb bone.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a pelvic appendage. +
NEW: Any collection of muscles that is part of a pelvic appendage.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010881 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007270
@@ -2521,58 +2765,58 @@ - UBERON:0010011 ; collection of basal ganglia - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010011 + UBERON:0009558 ; pastern bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009558

OLD: Clusters of neurons comprising the globus pallidus, putamen, caudate, nucleus accumbens, substantia nigra and subthalamic nucleus. They are involved with high level aspects of inhibitory motor activity in coordination with the excitation commands issued from the cerebellum. -
NEW: Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum.

-

AmiGO | QuickGO

]]> +

OLD: A bone that is part of the pastern region of a horse limb. +
NEW: A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3.

+

AmiGO | QuickGO

]]>
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010011 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009558
- - UBERON:0007270 ; pelvic appendage musculature - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007270 + + UBERON:0012349 ; digital pad + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012349

OLD: A musculature that is part of a pelvic appendage. -
NEW: Any collection of muscles that is part of a pelvic appendage.

-

AmiGO | QuickGO

]]> +

OLD: A thick spongy structure at the base of the paw, centred over the flexor surfaces of the distal interphalangeal joints. +
NEW: A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007270 + Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012349
- - UBERON:0005729 ; pectoral appendage field - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005729 - -

OLD: A limb/fin field that develops_into a pectoral appendage bud mesenchyme. -
NEW: A limb/fin field that has_potential_to_develop_into a pectoral appendage bud mesenchyme.

-

AmiGO | QuickGO

]]> + + UBERON:0001833 ; lip + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001833 + +

OLD: One of the two fleshy folds which surround the opening of the mouth. +
NEW: One of the two fleshy folds which surround the opening of the mouth.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005729 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001833
- UBERON:0012349 ; digital pad - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012349 + UBERON:0002894 ; olfactory cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002894

OLD: A thick spongy structure at the base of the paw, centred over the flexor surfaces of the distal interphalangeal joints. -
NEW: A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints.

-

AmiGO | QuickGO

]]> +

OLD: The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]. +
NEW: Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas.

+

AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012349 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002894
- + UBERON:2001672 ; dorsal fin radial bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001672 @@ -2600,29 +2844,17 @@ - UBERON:0001833 ; lip - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001833 - -

OLD: One of the two fleshy folds which surround the opening of the mouth. -
NEW: One of the two fleshy folds which surround the opening of the mouth.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001833 -
- - - UBERON:0002894 ; olfactory cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002894 + UBERON:0010572 ; manual digit 3 metacarpus cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010572

OLD: The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]. -
NEW: Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas.

-

AmiGO | QuickGO

]]> +

(was manual digit 3 metacarpus cartilage condensation)

+

OLD: A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme. +
NEW: A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002894 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010572
@@ -2651,6 +2883,58 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006214 + + UBERON:0002460 ; vesical vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002460 + +

OLD: The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]. +
NEW: The vesical veins are veins in the pelvis that drain blood from the urinary bladder. The vesical veins receive blood from the vesical venous plexus and are tributaries of the internal iliac veins. [WP].

+

AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002460 +
+ + + UBERON:0001142 ; left renal vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001142 + +

OLD: The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]. +
NEW: A renal vein that drains the left kidney

+

AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001142 +
+ + + UBERON:0000414 ; mucous gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000414 + +

OLD: A gland that secretes mucus[cjm]. In humans, these are found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,modified]. +
NEW: A gland in which the principal secretory cells are mucus secreting cells.

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000414 +
+ + + UBERON:0006098 ; basal nuclear complex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006098 + +

OLD: The deep nuclei found in the basal forebrain. +
NEW: The deep nuclei of telencephalic origin found in the basal region of the forebrain

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006098 +
+ UBERON:0010128 ; future pterygopalatine ganglion http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010128 @@ -2720,81 +3004,30 @@ - UBERON:0008835 ; hepatic diverticulum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008835 - -

OLD: The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct. -
NEW: An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts.

-

AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008835 -
- - - UBERON:0013511 ; ambiens muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013511 - -

OLD: The tendon of the ambiens muscle passes obliquely over the knee joint. It assists in the control of the bird’s toes. This muscle is present in some reptiles but not mammals. It is present in caiques and some other South American genera, but missing in most parrot genera. This was first noted by Garrod (1874) who proposed using this and other anatomical differences to classify parrots. For other anatomical differences among parrots see carotid arteries, furcula, and uropygial gland. -
NEW: A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia.

-

AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013511 -
- - - UBERON:0002460 ; vesical vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002460 - -

OLD: The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]. -
NEW: The vesical veins are veins in the pelvis that drain blood from the urinary bladder. The vesical veins receive blood from the vesical venous plexus and are tributaries of the internal iliac veins. [WP].

-

AmiGO | QuickGO

]]> -
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002460 -
- - - UBERON:0000414 ; mucous gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000414 - -

OLD: A gland that secretes mucus[cjm]. In humans, these are found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,modified]. -
NEW: A gland in which the principal secretory cells are mucus secreting cells.

-

AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000414 -
- - - UBERON:0001142 ; left renal vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001142 + UBERON:0010560 ; pedal digit 4 metatarsal cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010560

OLD: The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]. -
NEW: A renal vein that drains the left kidney

-

AmiGO | QuickGO

]]> +

(was pedal digit 4 metatarsal cartilage condensation)

+

OLD: A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme. +
NEW: A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme.

+

AmiGO | QuickGO

]]>
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001142 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010560
- UBERON:0006098 ; basal nuclear complex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006098 + UBERON:0007122 ; pharyngeal pouch 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007122

OLD: The deep nuclei found in the basal forebrain. -
NEW: The deep nuclei of telencephalic origin found in the basal region of the forebrain

-

AmiGO | QuickGO

]]> +

OLD: The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID] +
NEW: A pharyngeal pouch that is between pharyngeal arches 1 and 2.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006098 + Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007122
@@ -2810,33 +3043,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007126 - - UBERON:0013739 ; base of crypt of lieberkuhn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013739 - -

OLD: The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. -
NEW: The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell.

-

AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013739 -
- - - UBERON:0007679 ; intersomitic vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007679 - - (was intersegmental vein)

-

OLD: a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein[web]. Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel[ZFA]. -
NEW: The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel.

-

AmiGO | QuickGO

]]> -
- Tue, 19 Nov 2013 19:49:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007679 -
- UBERON:2001588 ; pectoral fin distal radial bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001588 @@ -2865,16 +3071,43 @@ - UBERON:0003096 ; middle lateral line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003096 + UBERON:0013511 ; ambiens muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013511

OLD: One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) -
NEW: One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.

-

AmiGO | QuickGO

]]> +

OLD: The tendon of the ambiens muscle passes obliquely over the knee joint. It assists in the control of the bird’s toes. This muscle is present in some reptiles but not mammals. It is present in caiques and some other South American genera, but missing in most parrot genera. This was first noted by Garrod (1874) who proposed using this and other anatomical differences to classify parrots. For other anatomical differences among parrots see carotid arteries, furcula, and uropygial gland. +
NEW: A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia.

+

AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003096 + Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013511 +
+ + + UBERON:0007679 ; intersomitic vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007679 + + (was intersegmental vein)

+

OLD: a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein[web]. Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel[ZFA]. +
NEW: The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel.

+

AmiGO | QuickGO

]]> +
+ Tue, 19 Nov 2013 19:49:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007679 +
+ + + UBERON:0008835 ; hepatic diverticulum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008835 + +

OLD: The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct. +
NEW: An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008835
@@ -2917,30 +3150,30 @@ - UBERON:2001671 ; anal fin radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001671 + UBERON:0004467 ; musculature of pharynx + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004467 (was anal fin radial)

-

OLD: Anal fin radials are internal skeletal supports of the anal fin. -
NEW: anal fin radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a pharynx [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a pharynx [Automatically generated definition].

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001671 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004467
- UBERON:0004467 ; musculature of pharynx - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004467 + UBERON:2001671 ; anal fin radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001671

OLD: A musculature that is part of a pharynx [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a pharynx [Automatically generated definition].

-

AmiGO | QuickGO

]]> +

(was anal fin radial)

+

OLD: Anal fin radials are internal skeletal supports of the anal fin. +
NEW: anal fin radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004467 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001671
@@ -2957,32 +3190,6 @@ - UBERON:0011509 ; sphincter colli profundus muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011509 - -

OLD: The sphincter colli profundus of lie below the platysma in the area of the parotid gland (gland regions). -
NEW: The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions).

-

AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:08 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011509 -
- - - UBERON:0005820 ; pontine flexure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005820 - -

OLD: a bend in the axis of the embryological central nervous system (the neuraxis). This flexure marks the junction between the metencephalon and the myelencephalon. The division of the rhombencephalon (the early hindbrain) into the metencephalon and the myelencephalon occurs at the 7th week of development. In the mature brain, the metencephalon forms the pons and cerebellum, whilst the myelencephalon forms the medulla oblongata[WP]. -
NEW: A dorsally concave bend of the embryonic rhombencephalon that produces a thinning of the roof of the pons and medulla oblongata and defines the boundary between the metencephalon and myelencephalon in the embryo[MP].

-

AmiGO | QuickGO

]]> -
- Thu, 07 Nov 2013 14:10:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005820 -
- - UBERON:0008904 ; neuromast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008904 @@ -2996,6 +3203,19 @@ + UBERON:0011509 ; sphincter colli profundus muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011509 + +

OLD: The sphincter colli profundus of lie below the platysma in the area of the parotid gland (gland regions). +
NEW: The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions).

+

AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:08 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011509 +
+ + UBERON:0000052 ; fornix of brain http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000052 @@ -3022,19 +3242,32 @@ - UBERON:0000446 ; septum of telencephalon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000446 + UBERON:4200111 ; prepelvic fin spine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111

OLD: Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]. -
NEW: Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996).

-

AmiGO | QuickGO

]]> +

OLD: Fin spine located anterior to the pelvic fin and posterior to the pectoral fin. +
NEW: Spine located anterior to the pelvic fin and posterior to the pectoral fin.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000446 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111
- + + UBERON:0005820 ; pontine flexure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005820 + +

OLD: a bend in the axis of the embryological central nervous system (the neuraxis). This flexure marks the junction between the metencephalon and the myelencephalon. The division of the rhombencephalon (the early hindbrain) into the metencephalon and the myelencephalon occurs at the 7th week of development. In the mature brain, the metencephalon forms the pons and cerebellum, whilst the myelencephalon forms the medulla oblongata[WP]. +
NEW: A dorsally concave bend of the embryonic rhombencephalon that produces a thinning of the roof of the pons and medulla oblongata and defines the boundary between the metencephalon and myelencephalon in the embryo[MP].

+

AmiGO | QuickGO

]]> +
+ Thu, 07 Nov 2013 14:10:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005820 +
+ + UBERON:0007295 ; presumptive rhombomere 8 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007295 @@ -3048,19 +3281,32 @@ - UBERON:4200111 ; prepelvic fin spine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 + UBERON:0005173 ; abdominal segment organ + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005173

OLD: Fin spine located anterior to the pelvic fin and posterior to the pectoral fin. -
NEW: Spine located anterior to the pelvic fin and posterior to the pectoral fin.

-

AmiGO | QuickGO

]]> +

OLD: An organ that is part of a abdominal segment of trunk. +
NEW: An organ that part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005173
- + + UBERON:0000446 ; septum of telencephalon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000446 + +

OLD: Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]. +
NEW: Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996).

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000446 +
+ + UBERON:0007143 ; right internal carotid artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007143 @@ -3074,16 +3320,16 @@ - UBERON:0007290 ; presumptive rhombomere 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007290 + UBERON:0000121 ; perineurium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000121

OLD: A presumptive structure that develops_into a rhombomere 3. -
NEW: A presumptive structure that has_potential_to_develop_into a rhombomere 3.

-

AmiGO | QuickGO

]]> +

OLD: Connective tissue surrounding a fascicle. +
NEW: A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007290 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000121
@@ -3100,81 +3346,55 @@ - UBERON:0006067 ; musculature of hindlimb zeugopod - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006067 - -

OLD: A musculature that is part of a hindlimb zeugopod. -
NEW: Any collection of muscles that is part of a hindlimb zeugopod.

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006067 -
- - - UBERON:0001016 ; nervous system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001016 + UBERON:0006235 ; foregut-midgut junction + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006235

OLD: a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]. -
NEW: The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO].

-

AmiGO | QuickGO

]]> +

OLD: An anatomical boundary that adjacent_to a foregut and adjacent_to a midgut. +
NEW: An anatomical junctions that overlaps the foregut and midgut.

+

AmiGO | QuickGO

]]>
Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001016 -
- - - UBERON:0005173 ; abdominal segment organ - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005173 - -

OLD: An organ that is part of a abdominal segment of trunk. -
NEW: An organ that part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region.

-

AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005173 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006235
- UBERON:0002778 ; ventral pallidum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002778 + UBERON:0007290 ; presumptive rhombomere 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007290

OLD: Part of the globus pallidus, consistingo of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). -
NEW: Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM).

-

AmiGO | QuickGO

]]> +

OLD: A presumptive structure that develops_into a rhombomere 3. +
NEW: A presumptive structure that has_potential_to_develop_into a rhombomere 3.

+

AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002778 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007290
- UBERON:0000121 ; perineurium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000121 + UBERON:0006067 ; musculature of hindlimb zeugopod + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006067

OLD: Connective tissue surrounding a fascicle. -
NEW: A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition)

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a hindlimb zeugopod. +
NEW: Any collection of muscles that is part of a hindlimb zeugopod.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000121 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006067
- UBERON:0006235 ; foregut-midgut junction - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006235 + UBERON:0001016 ; nervous system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001016

OLD: An anatomical boundary that adjacent_to a foregut and adjacent_to a midgut. -
NEW: An anatomical junctions that overlaps the foregut and midgut.

-

AmiGO | QuickGO

]]> +

OLD: a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]. +
NEW: The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO].

+

AmiGO | QuickGO

]]>
Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006235 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001016
@@ -3203,6 +3423,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000117 + + UBERON:0002778 ; ventral pallidum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002778 + +

OLD: Part of the globus pallidus, consistingo of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). +
NEW: Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM).

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002778 +
+ UBERON:0000200 ; gyrus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000200 @@ -3216,6 +3449,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000200 + + UBERON:0003096 ; middle lateral line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003096 + +

OLD: One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/lat_line/lat_line.html'>lateral line</a> by T. Whitfield.) +
NEW: One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003096 +
+ UBERON:0007252 ; intervertebral disk of cervical vertebra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007252 @@ -3243,20 +3489,19 @@ - UBERON:2000936 ; dorsal fin distal radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000936 + UBERON:0013739 ; base of crypt of lieberkuhn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013739 (was dorsal fin distal radial)

-

OLD: Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally. -
NEW: dorsal fin distal radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. +
NEW: The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000936 + Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013739
- + UBERON:0005730 ; pelvic appendage field http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005730 @@ -3296,30 +3541,30 @@ - UBERON:0010091 ; future hindbrain meninges - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010091 + UBERON:2000936 ; dorsal fin distal radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000936

OLD: A multi-tissue structure that develops_into a meninx of hindbrain. -
NEW: A multi-tissue structure that has_potential_to_develop_into a meninx of hindbrain.

-

AmiGO | QuickGO

]]> +

(was dorsal fin distal radial)

+

OLD: Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally. +
NEW: dorsal fin distal radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010091 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000936
- UBERON:0001734 ; palatine uvula - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001734 + UBERON:0010091 ; future hindbrain meninges + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010091 (was uvula)

-

OLD: Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people. -
NEW: Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers.

-

AmiGO | QuickGO

]]> +

OLD: A multi-tissue structure that develops_into a meninx of hindbrain. +
NEW: A multi-tissue structure that has_potential_to_develop_into a meninx of hindbrain.

+

AmiGO | QuickGO

]]>
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001734 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010091
@@ -3336,6 +3581,20 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002027 + + UBERON:0001734 ; palatine uvula + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001734 + + (was uvula)

+

OLD: Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people. +
NEW: Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers.

+

AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001734 +
+ UBERON:0001817 ; lacrimal gland http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001817 @@ -3375,46 +3634,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004681 - - UBERON:0007287 ; presumptive bulbus arteriosus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007287 - -

OLD: A presumptive structure that develops_into a bulbus arteriosus. -
NEW: A presumptive structure that has_potential_to_develop_into a bulbus arteriosus.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007287 -
- - - UBERON:0000091 ; bilaminar disc - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000091 - -

OLD: the epiblast and the hypoblast, evolved from the embryoblast -
NEW: A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc.

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000091 -
- - - UBERON:2000508 ; pelvic fin radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000508 - - (was pelvic fin radial)

-

OLD: Pelvic fin radials are internal skeletal supports of the pelvic fin. -
NEW: pelvic fin radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000508 -
- UBERON:0002474 ; cerebellar peduncular complex http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002474 @@ -3441,6 +3660,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200013 + + UBERON:0007287 ; presumptive bulbus arteriosus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007287 + +

OLD: A presumptive structure that develops_into a bulbus arteriosus. +
NEW: A presumptive structure that has_potential_to_develop_into a bulbus arteriosus.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007287 +
+ UBERON:0003338 ; ganglion of peripheral nervous system http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003338 @@ -3454,6 +3686,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003338 + + UBERON:0000091 ; bilaminar disc + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000091 + +

OLD: the epiblast and the hypoblast, evolved from the embryoblast +
NEW: A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc.

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000091 +
+ UBERON:0002521 ; elastic tissue http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002521 @@ -3467,19 +3712,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002521 - - UBERON:0007257 ; intervertebral disk of sacral vertebra - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007257 - -

OLD: An intervertebral disk that is part of a sacral region of vertebral column. -
NEW: An intervertebral disk that is part of a sacral region of vertebral column. A sacral intervertebral disk connects at least one sacral vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra

-

AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007257 -
- UBERON:0004533 ; left testicle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004533 @@ -3493,6 +3725,33 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004533 + + UBERON:2000508 ; pelvic fin radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000508 + + (was pelvic fin radial)

+

OLD: Pelvic fin radials are internal skeletal supports of the pelvic fin. +
NEW: pelvic fin radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000508 +
+ + + UBERON:0007257 ; intervertebral disk of sacral vertebra + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007257 + +

OLD: An intervertebral disk that is part of a sacral region of vertebral column. +
NEW: An intervertebral disk that is part of a sacral region of vertebral column. A sacral intervertebral disk connects at least one sacral vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007257 +
+ UBERON:0006264 ; mouth-foregut junction http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006264 @@ -3559,45 +3818,6 @@ - UBERON:0001808 ; parasympathetic ganglion - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001808 - -

OLD: Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]. -
NEW: Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001808 -
- - - UBERON:0002287 ; optic recess of third ventricle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002287 - -

OLD: At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]. -
NEW: Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis

-

AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002287 -
- - - UBERON:0005819 ; cervical flexure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005819 - -

OLD: ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP]. In humans develops by the 5th week of gestation[WP]. -
NEW: A ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP].

-

AmiGO | QuickGO

]]> -
- Thu, 07 Nov 2013 14:10:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005819 -
- - UBERON:0007271 ; appendage musculature http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007271 @@ -3637,6 +3857,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008584 + + UBERON:0001808 ; parasympathetic ganglion + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001808 + +

OLD: Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]. +
NEW: Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001808 +
+ + + UBERON:0002287 ; optic recess of third ventricle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002287 + +

OLD: At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]. +
NEW: Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis

+

AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002287 +
+ UBERON:0003278 ; skeleton of lower jaw http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003278 @@ -3650,6 +3896,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003278 + + UBERON:0005819 ; cervical flexure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005819 + +

OLD: ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP]. In humans develops by the 5th week of gestation[WP]. +
NEW: A ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP].

+

AmiGO | QuickGO

]]> +
+ Thu, 07 Nov 2013 14:10:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005819 +
+ UBERON:0011011 ; brachioradialis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011011 @@ -3663,32 +3922,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011011 - - UBERON:0001841 ; anterior semicircular canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001841 - -

OLD: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) -
NEW: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration.

-

AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001841 -
- - - UBERON:0010126 ; future nucleus ambiguus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010126 - -

OLD: A gray matter of neuraxis that develops_into a nucleus ambiguus. -
NEW: A gray matter of neuraxis that has_potential_to_develop_into a nucleus ambiguus.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010126 -
- UBERON:0000084 ; ureteric bud http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000084 @@ -3716,14 +3949,40 @@ - UBERON:0003065 ; ciliary marginal zone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003065 + UBERON:0001841 ; anterior semicircular canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001841

OLD: Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050427-5'>Wehman et al, 2005.</a> -
NEW: Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]

-

AmiGO | QuickGO

]]> -
+

OLD: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for <a href='http://zfin.org/zf_info/anatomy/dict/semi_canal/semi.html'>semicircular canals</a> by T. Whitfield.) +
NEW: One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration.

+

AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001841 +
+ + + UBERON:0010126 ; future nucleus ambiguus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010126 + +

OLD: A gray matter of neuraxis that develops_into a nucleus ambiguus. +
NEW: A gray matter of neuraxis that has_potential_to_develop_into a nucleus ambiguus.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010126 +
+ + + UBERON:0003065 ; ciliary marginal zone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003065 + +

OLD: Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. <a href='http://zfin.org/cgi-bin/ZFIN_jump?record=ZDB-PUB-050427-5'>Wehman et al, 2005.</a> +
NEW: Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005]

+

AmiGO | QuickGO

]]> +
Tue, 05 Nov 2013 19:58:00 +0000 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003065
@@ -3767,32 +4026,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001946
- - UBERON:0002129 ; cerebellar cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002129 - -

OLD: The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]. -
NEW: The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002129 -
- - - UBERON:0002663 ; septal nuclear complex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002663 - -

OLD: The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds &amp; Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]. -
NEW: Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone).

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002663 -
- UBERON:0003849 ; mesencephalic neural crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003849 @@ -3806,6 +4039,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003849 + + UBERON:0002129 ; cerebellar cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002129 + +

OLD: The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]. +
NEW: The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002129 +
+ UBERON:0004464 ; musculature of thorax http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004464 @@ -3819,6 +4065,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004464 + + UBERON:0002663 ; septal nuclear complex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002663 + +

OLD: The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds &amp; Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]. +
NEW: Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone).

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002663 +
+ UBERON:0001041 ; foregut http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001041 @@ -3858,20 +4117,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007254 - - UBERON:2001614 ; anal fin middle radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001614 - - (was anal fin middle radial)

-

OLD: Anal fin radial that is the rod-like internal median skeletal support bone of the anal fin located between the anal fin proximal radial and anal fin distal radial. -
NEW: anal fin middle radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001614 -
- UBERON:0002953 ; lateral lemniscus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002953 @@ -3912,6 +4157,19 @@ + UBERON:0002753 ; posterior spinocerebellar tract + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002753 + +

OLD: The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]. +
NEW: It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002753 +
+ + UBERON:0002448 ; fungiform papilla http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002448 @@ -3924,6 +4182,20 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002448 + + UBERON:2001614 ; anal fin middle radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001614 + + (was anal fin middle radial)

+

OLD: Anal fin radial that is the rod-like internal median skeletal support bone of the anal fin located between the anal fin proximal radial and anal fin distal radial. +
NEW: anal fin middle radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001614 +
+ UBERON:0004488 ; musculature of pes http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004488 @@ -3938,16 +4210,29 @@ - UBERON:0002753 ; posterior spinocerebellar tract - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002753 + UBERON:0002691 ; ventral tegmental area + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002691

OLD: The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]. -
NEW: It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum.

-

AmiGO | QuickGO

]]> +

OLD: The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]. +
NEW: A group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted].

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002753 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002691 +
+ + + UBERON:0004667 ; interventricular septum muscular part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004667 + +

OLD: A portion of muscle tissue that is part of a interventricular septum [Automatically generated definition]. +
NEW: The muscular portion of the wall between the two lower chambers of the heart

+

AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004667
@@ -3963,19 +4248,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004477 - - UBERON:0002691 ; ventral tegmental area - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002691 - -

OLD: The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]. -
NEW: A group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted].

-

AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002691 -
- UBERON:0003484 ; eye sebaceous gland http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003484 @@ -3989,19 +4261,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003484 - - UBERON:0004667 ; interventricular septum muscular part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004667 - -

OLD: A portion of muscle tissue that is part of a interventricular septum [Automatically generated definition]. -
NEW: The muscular portion of the wall between the two lower chambers of the heart

-

AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004667 -
- UBERON:2000623 ; basipterygium bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000623 @@ -4069,17 +4328,16 @@ - UBERON:0001125 ; serratus ventralis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001125 + UBERON:0004684 ; raphe nuclei + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004684 (was serratus anterior)

-

OLD: The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. -
NEW: The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted].

-

AmiGO | QuickGO

]]> +

OLD: Thin plates of cells in and immediately adjacent to the sagittal plane[NIF]. A moderate-size cluster of nuclei found in the brain stem. Their main function is to release serotonin to the rest of the brain. Selective serotonin reuptake inhibitor (SSRI) antidepressants are believed to act in these nuclei, as well as at their targets. The raphe nuclei are traditionally considered to be the medial portion of the reticular formation, and they appear as a ridge of cells in the center and most medial portion of the brain stem. +
NEW: The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001125 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004684
@@ -4096,16 +4354,17 @@ - UBERON:0008918 ; ampulla of Lorenzini - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008918 + UBERON:0001125 ; serratus ventralis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001125

OLD: The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores... Each ampulla consists of a jelly-filled canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]. -
NEW: The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP].

-

AmiGO | QuickGO

]]> +

(was serratus anterior)

+

OLD: The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. +
NEW: The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted].

+

AmiGO | QuickGO

]]>
Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008918 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001125
@@ -4121,6 +4380,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000166 + + UBERON:0008918 ; ampulla of Lorenzini + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008918 + +

OLD: The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores... Each ampulla consists of a jelly-filled canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]. +
NEW: The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008918 +
+ UBERON:0006134 ; nerve fiber http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006134 @@ -4135,19 +4407,6 @@ - UBERON:0004684 ; raphe nuclei - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004684 - -

OLD: Thin plates of cells in and immediately adjacent to the sagittal plane[NIF]. A moderate-size cluster of nuclei found in the brain stem. Their main function is to release serotonin to the rest of the brain. Selective serotonin reuptake inhibitor (SSRI) antidepressants are believed to act in these nuclei, as well as at their targets. The raphe nuclei are traditionally considered to be the medial portion of the reticular formation, and they appear as a ridge of cells in the center and most medial portion of the brain stem. -
NEW: The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004684 -
- - UBERON:0001904 ; habenula http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001904 @@ -4160,6 +4419,20 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001904 + + UBERON:0010573 ; manual digit 4 metacarpus cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010573 + + (was manual digit 4 metacarpus cartilage condensation)

+

OLD: A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme. +
NEW: A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme.

+

AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010573 +
+ UBERON:0001190 ; ovarian artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001190 @@ -4174,47 +4447,21 @@ - UBERON:0001401 ; longissimus thoracis muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001401 + UBERON:0002240 ; spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002240

OLD: The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. -
NEW: The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans].

-

AmiGO | QuickGO

]]> +

OLD: Part of the central nervous system which is lodged in the vertebral canal; it is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate; it is enclosed in three protective membranes, the meninges. +
NEW: Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO)

+

AmiGO | QuickGO

]]>
- Wed, 22 May 2013 21:07:08 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001401 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002240
- UBERON:0010902 ; tibiotarsus cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010902 - -

OLD: A cartilaginous condensation that develops_into a tibiotarsus. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010902 -
- - - UBERON:0009568 ; trunk region of vertebral column - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009568 - -

OLD: Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. -
NEW: Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions.

-

AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:08 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009568 -
- - - UBERON:0007127 ; pharyngeal pouch 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007127 + UBERON:0007127 ; pharyngeal pouch 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007127

OLD: Along with the fourth pouch, contributes to the formation of the musculature and cartilage of the larynx[WP]. @@ -4226,45 +4473,58 @@ - UBERON:0002240 ; spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002240 + UBERON:0011622 ; thyrohyoid bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011622

OLD: Part of the central nervous system which is lodged in the vertebral canal; it is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate; it is enclosed in three protective membranes, the meninges. -
NEW: Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO)

-

AmiGO | QuickGO

]]> +

OLD: Is a laterally bowed, sagitally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx. +
NEW: Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx.

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002240 + Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011622
- UBERON:0004486 ; musculature of perineum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004486 + UBERON:0001401 ; longissimus thoracis muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001401

OLD: A musculature that is part of a perineum [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a perineum [Automatically generated definition].

-

AmiGO | QuickGO

]]> +

OLD: The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. +
NEW: The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans].

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004486 + Wed, 22 May 2013 21:07:08 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001401
- UBERON:0011622 ; thyrohyoid bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011622 + UBERON:0010902 ; tibiotarsus cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010902

OLD: Is a laterally bowed, sagitally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx. -
NEW: Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx.

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a tibiotarsus. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus.

+

AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011622 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010902
+ UBERON:0009568 ; trunk region of vertebral column + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009568 + +

OLD: Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. +
NEW: Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions.

+

AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:08 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009568 +
+ + UBERON:0004066 ; frontonasal prominence http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004066 @@ -4277,6 +4537,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004066 + + UBERON:0004486 ; musculature of perineum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004486 + +

OLD: A musculature that is part of a perineum [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a perineum [Automatically generated definition].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004486 +
+ UBERON:0010843 ; clavicle cartilage condensation http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010843 @@ -4330,19 +4603,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001954 - - UBERON:0005382 ; dorsal striatum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005382 - -

OLD: Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins. -
NEW: Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't.

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005382 -
- UBERON:0011810 ; collection of feathers http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011810 @@ -4369,19 +4629,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001842 - - UBERON:0014406 ; nauplius stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 - -

OLD: The nauplius stage is characterised by the use of the appendages of the head (the antennae) for swimming. The nauplius is also the stage at which a simple, unpaired eye first appears. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca. -
NEW: The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca.

-

AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 -
- UBERON:0010090 ; future falx cerebri http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010090 @@ -4395,6 +4642,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010090 + + UBERON:0005382 ; dorsal striatum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005382 + +

OLD: Those portions of the caudate nucleus and especially the putamen located generally superior to a plane representing the anterior commissure; also called the dorsal basal ganglia; may function in motor activities with cognitive origins. +
NEW: Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005382 +
+ UBERON:0007297 ; presumptive pronephric mesoderm http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007297 @@ -4422,16 +4682,16 @@ - UBERON:0005172 ; abdomen organ - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005172 + UBERON:0010852 ; fibula pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010852

OLD: An organ that is part of an abdomen [Automatically generated definition]. -
NEW: An organ that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland.

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a fibula. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a fibula.

+

AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005172 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010852
@@ -4447,6 +4707,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004601 + + UBERON:0005172 ; abdomen organ + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005172 + +

OLD: An organ that is part of an abdomen [Automatically generated definition]. +
NEW: An organ that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland.

+

AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005172 +
+ UBERON:0008838 ; metapodial pad http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008838 @@ -4460,19 +4733,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0008838 - - UBERON:0010852 ; fibula pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010852 - -

OLD: A pre-cartilage condensation that develops_into a fibula. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a fibula.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010852 -
- UBERON:0001874 ; putamen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001874 @@ -4512,6 +4772,33 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006215 + + UBERON:0014406 ; nauplius stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 + +

OLD: The nauplius stage is characterised by the use of the appendages of the head (the antennae) for swimming. The nauplius is also the stage at which a simple, unpaired eye first appears. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca. +
NEW: The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca.

+

AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 +
+ + + UBERON:0010561 ; pedal digit 5 metatarsal cartilage element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010561 + + (was pedal digit 5 metatarsal cartilage condensation)

+

OLD: A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme. +
NEW: A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme.

+

AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010561 +
+ UBERON:0006222 ; future diencephalon http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006222 @@ -4525,6 +4812,32 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006222 + + UBERON:0010885 ; hindlimb bone cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010885 + +

OLD: A cartilaginous condensation that develops_into a hindlimb bone. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010885 +
+ + + UBERON:0004478 ; musculature of larynx + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004478 + +

OLD: A musculature that is part of a larynx [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a larynx [Automatically generated definition].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004478 +
+ UBERON:0005178 ; thoracic cavity organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005178 @@ -4551,19 +4864,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000123 - - UBERON:0010885 ; hindlimb bone cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010885 - -

OLD: A cartilaginous condensation that develops_into a hindlimb bone. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010885 -
- UBERON:0001870 ; frontal cortex http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001870 @@ -4577,6 +4877,33 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001870 + + UBERON:0002270 ; hyaloid artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002270 + +

OLD: The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla. +
NEW: The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. . Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla.

+

AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002270 +
+ + + UBERON:2001586 ; pectoral fin radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001586 + + (was pectoral fin radial)

+

OLD: Pectoral fin radials are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. +
NEW: pectoral fin radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001586 +
+ UBERON:0010056 ; future tongue http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010056 @@ -4591,30 +4918,30 @@ - UBERON:0004478 ; musculature of larynx - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004478 + UBERON:0001384 ; primary motor cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001384

OLD: A musculature that is part of a larynx [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a larynx [Automatically generated definition].

-

AmiGO | QuickGO

]]> +

OLD: a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule. +
NEW: The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004478 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001384
- UBERON:2001586 ; pectoral fin radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001586 + UBERON:0006497 ; interosseous muscle of pes + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006497 (was pectoral fin radial)

-

OLD: Pectoral fin radials are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. -
NEW: pectoral fin radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

(was pes interosseus muscle)

+

OLD: An interosseus muscle that is part of a pes. +
NEW: An interosseous muscle that is part of a pes.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001586 + Wed, 22 May 2013 21:07:08 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006497
@@ -4631,19 +4958,6 @@ - UBERON:0005177 ; trunk organ - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005177 - -

OLD: An organ that is part of a trunk [Automatically generated definition]. -
NEW: An organ that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions.

-

AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005177 -
- - UBERON:0002477 ; medial globus pallidus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002477 @@ -4656,33 +4970,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002477 - - UBERON:0002270 ; hyaloid artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002270 - -

OLD: The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla. -
NEW: The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. . Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla.

-

AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002270 -
- - - UBERON:0006497 ; interosseous muscle of pes - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006497 - - (was pes interosseus muscle)

-

OLD: An interosseus muscle that is part of a pes. -
NEW: An interosseous muscle that is part of a pes.

-

AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:08 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006497 -
- UBERON:0006440 ; os clitoris http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006440 @@ -4724,16 +5011,16 @@ - UBERON:0005721 ; pronephric mesoderm - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005721 + UBERON:0010123 ; future facial nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010123

OLD: A mesoderm that develops_into a pronephros. -
NEW: A mesoderm that has_potential_to_develop_into a pronephros.

-

AmiGO | QuickGO

]]> +

OLD: A gray matter of neuraxis that develops_into a facial nucleus. +
NEW: A gray matter of neuraxis that has_potential_to_develop_into a facial nucleus.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005721 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010123
@@ -4750,29 +5037,16 @@ - UBERON:0001384 ; primary motor cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001384 - -

OLD: a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule. -
NEW: The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html

-

AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001384 -
- - - UBERON:0004602 ; rib 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004602 + UBERON:0005177 ; trunk organ + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005177

OLD: The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]. -
NEW: The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted].

-

AmiGO | QuickGO

]]> +

OLD: An organ that is part of a trunk [Automatically generated definition]. +
NEW: An organ that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions.

+

AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004602 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005177
@@ -4789,16 +5063,29 @@ - UBERON:0010123 ; future facial nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010123 + UBERON:0005721 ; pronephric mesoderm + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005721

OLD: A gray matter of neuraxis that develops_into a facial nucleus. -
NEW: A gray matter of neuraxis that has_potential_to_develop_into a facial nucleus.

-

AmiGO | QuickGO

]]> +

OLD: A mesoderm that develops_into a pronephros. +
NEW: A mesoderm that has_potential_to_develop_into a pronephros.

+

AmiGO | QuickGO

]]>
Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010123 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005721 +
+ + + UBERON:0004602 ; rib 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004602 + +

OLD: The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]. +
NEW: The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted].

+

AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004602
@@ -4832,26 +5119,117 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002361

OLD: delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative. -
NEW: The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals.

-

AmiGO | QuickGO

]]> +

OLD: delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative. +
NEW: The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals.

+

AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002361 +
+ + + UBERON:0000453 ; decidua basalis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000453 + +

OLD: Region between the blastocyst and the myometrium. +
NEW: area of uterine endometrium found between the implanted chorionic vesicle and the myometrium.

+

AmiGO | QuickGO

]]> +
+ Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000453 +
+ + + UBERON:2001613 ; dorsal fin middle radial bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001613 + + (was dorsal fin middle radial)

+

OLD: Dorsal fin radial that is the rod-like internal median skeletal support bone of the dorsal fin located between the dorsal fin proximal radial and dorsal fin distal radial. +
NEW: dorsal fin middle radial element that is composed of bone tissue.

+

AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001613 +
+ + + UBERON:0010540 ; tarsus pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010540 + +

OLD: A pre-cartilage condensation that develops_into a tarsal bone. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tarsal bone.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010540 +
+ + + UBERON:0000085 ; morula + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000085 + +

OLD: An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida[WP] The compacted embryo before cavity formation. +
NEW: A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000085 +
+ + + UBERON:0003869 ; presumptive ganglion + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003869 + +

OLD: A presumptive structure that develops_into a ganglion. +
NEW: A presumptive structure that has_potential_to_develop_into a ganglion.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003869 +
+ + + UBERON:0003853 ; spinal cord neural crest + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003853 + +

OLD: A neural crest that developmentally_contributes_to a spinal cord. +
NEW: A neural crest that has_potential_to_developmentally_contribute_to a spinal cord.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003853 +
+ + + UBERON:0007291 ; presumptive rhombomere 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007291 + +

OLD: A presumptive structure that develops_into a rhombomere 4. +
NEW: A presumptive structure that has_potential_to_develop_into a rhombomere 4.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002361 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007291
- UBERON:2001613 ; dorsal fin middle radial bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001613 + UBERON:0010903 ; tibiotarsus pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010903 (was dorsal fin middle radial)

-

OLD: Dorsal fin radial that is the rod-like internal median skeletal support bone of the dorsal fin located between the dorsal fin proximal radial and dorsal fin distal radial. -
NEW: dorsal fin middle radial element that is composed of bone tissue.

-

AmiGO | QuickGO

]]> +

OLD: A pre-cartilage condensation that develops_into a tibiotarsus. +
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus.

+

AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001613 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010903
@@ -5025,6 +5403,20 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0011671 + + UBERON:0003252 ; thoracic rib cage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003252 + + (was rib cage)

+

OLD: Subdivision of skeletal system that consists of all ribs in an organism connected via the sternum. +
NEW: Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case.

+

AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:16 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003252 +
+ UBERON:0005452 ; hepatic cord http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005452 @@ -5039,84 +5431,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0005452 - - UBERON:0010540 ; tarsus pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010540 - -

OLD: A pre-cartilage condensation that develops_into a tarsal bone. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tarsal bone.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010540 -
- - - UBERON:0000085 ; morula - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000085 - -

OLD: An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida[WP] The compacted embryo before cavity formation. -
NEW: A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000085 -
- - - UBERON:0003869 ; presumptive ganglion - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003869 - -

OLD: A presumptive structure that develops_into a ganglion. -
NEW: A presumptive structure that has_potential_to_develop_into a ganglion.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003869 -
- - - UBERON:0003853 ; spinal cord neural crest - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003853 - -

OLD: A neural crest that developmentally_contributes_to a spinal cord. -
NEW: A neural crest that has_potential_to_developmentally_contribute_to a spinal cord.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003853 -
- - - UBERON:0007291 ; presumptive rhombomere 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007291 - -

OLD: A presumptive structure that develops_into a rhombomere 4. -
NEW: A presumptive structure that has_potential_to_develop_into a rhombomere 4.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007291 -
- - - UBERON:0010903 ; tibiotarsus pre-cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010903 - -

OLD: A pre-cartilage condensation that develops_into a tibiotarsus. -
NEW: A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010903 -
- UBERON:0002655 ; body of lateral ventricle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002655 @@ -5131,17 +5445,16 @@ - UBERON:0003252 ; thoracic rib cage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003252 + UBERON:0012080 ; patella cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012080 (was rib cage)

-

OLD: Subdivision of skeletal system that consists of all ribs in an organism connected via the sternum. -
NEW: Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case.

-

AmiGO | QuickGO

]]> +

OLD: A cartilaginous condensation that develops_into a patella. +
NEW: A cartilaginous condensation that has_potential_to_develop_into a patella.

+

AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:16 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0003252 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012080
@@ -5158,16 +5471,16 @@ - UBERON:0012080 ; patella cartilage condensation - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012080 + UBERON:0004462 ; musculature of body wall + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004462

OLD: A cartilaginous condensation that develops_into a patella. -
NEW: A cartilaginous condensation that has_potential_to_develop_into a patella.

-

AmiGO | QuickGO

]]> +

OLD: A musculature that is part of a body wall [Automatically generated definition]. +
NEW: Any collection of muscles that is part of a body wall [Automatically generated definition].

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0012080 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004462
@@ -5210,19 +5523,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010847 - - UBERON:0004462 ; musculature of body wall - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004462 - -

OLD: A musculature that is part of a body wall [Automatically generated definition]. -
NEW: Any collection of muscles that is part of a body wall [Automatically generated definition].

-

AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004462 -
- UBERON:0006482 ; brodmann (1909) area 45 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0006482 @@ -5249,6 +5549,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002468 + + UBERON:0010096 ; future myelencephalon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010096 + +

OLD: A developing anatomical structure that develops_into a myelencephalon. +
NEW: A developing anatomical structure that has_potential_to_develop_into a myelencephalon.

+

AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010096 +
+ UBERON:0007703 ; spinothalamic tract http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0007703 @@ -5301,19 +5614,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001134 - - UBERON:0010096 ; future myelencephalon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010096 - -

OLD: A developing anatomical structure that develops_into a myelencephalon. -
NEW: A developing anatomical structure that has_potential_to_develop_into a myelencephalon.

-

AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010096 -
- UBERON:0002470 ; autopod region http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002470 @@ -5340,6 +5640,19 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001723 + + UBERON:0001140 ; renal vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001140 + +

OLD: The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]. +
NEW: Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava.

+

AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:08 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001140 +
+ UBERON:0004465 ; musculature of neck http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0004465 @@ -5354,16 +5667,16 @@ - UBERON:0001140 ; renal vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001140 + UBERON:0001883 ; olfactory tubercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001883

OLD: The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]. -
NEW: Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava.

-

AmiGO | QuickGO

]]> +

OLD: a multi-sensory processing center in the olfactory cortex that plays a role in reward behaviors. The OT is a composite structure that receives direct input from the olfactory bulb and contains the morphological and histochemical characteristics of the ventral pallidum and the striatum of the forebrain (Heimer & Wilson 1975). +
NEW: Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)

+

AmiGO | QuickGO

]]>
- Wed, 22 May 2013 21:07:08 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001140 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001883
@@ -5393,16 +5706,16 @@ - UBERON:0001883 ; olfactory tubercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001883 + UBERON:0010127 ; future dorsal motor nucleus of vagus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010127

OLD: a multi-sensory processing center in the olfactory cortex that plays a role in reward behaviors. The OT is a composite structure that receives direct input from the olfactory bulb and contains the morphological and histochemical characteristics of the ventral pallidum and the striatum of the forebrain (Heimer & Wilson 1975). -
NEW: Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone)

-

AmiGO | QuickGO

]]> +

OLD: A gray matter of neuraxis that develops_into a dorsal motor nucleus of vagus nerve. +
NEW: A gray matter of neuraxis that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve.

+

AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0001883 + Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010127
@@ -5432,16 +5745,16 @@ - UBERON:0010127 ; future dorsal motor nucleus of vagus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010127 + UBERON:0009551 ; distal segment of digit + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009551

OLD: A gray matter of neuraxis that develops_into a dorsal motor nucleus of vagus nerve. -
NEW: A gray matter of neuraxis that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve.

-

AmiGO | QuickGO

]]> +

OLD: A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium). +
NEW: A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium).

+

AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010127 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009551
@@ -5483,19 +5796,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0002260 - - UBERON:0009551 ; distal segment of digit - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009551 - -

OLD: A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium). -
NEW: A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium).

-

AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0009551 -
- UBERON:0000956 ; cerebral cortex http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0000956 diff --git a/diffs/new_term.rss b/diffs/new_term.rss index 84bf47526e..9884eeb232 100644 --- a/diffs/new_term.rss +++ b/diffs/new_term.rss @@ -6,77 +6,90 @@ http://geneontology.org/ RSS feed of new terms added to the uberon en - Sun, 15 Dec 2013 12:26:00 +0000 - Sun, 15 Dec 2013 12:26:00 +0000 + Sat, 11 Jan 2014 11:00:00 +0000 + Sat, 11 Jan 2014 11:00:00 +0000 webmaster@geneontology.org - UBERON:0014934 ; cerebral cortex mantle layer - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014934 + UBERON:0015117 ; lamina terminalis of cerebral hemisphere + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015117
-
-AmiGO | QuickGO

]]> + The remnant of the lamina terminalis in the developed brain.
+AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014934 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015117
- UBERON:0014935 ; cerebral cortex marginal layer - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014935 + UBERON:4300081 ; mesopterygium element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300081

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014935 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300081
- UBERON:0014936 ; cerebral cortex ventricular layer - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014936 + UBERON:4300082 ; metapterygium element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300082

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014936 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300082
- UBERON:0014940 ; cerebral cortex subventricular zone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014940 + UBERON:4300083 ; propterygium element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300083

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014940 + Sat, 11 Jan 2014 11:00:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300083
- - UBERON:0014950 ; layer of developing cerebral cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014950 + + UBERON:0015116 ; distal tarsal bone 5 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015116

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 15 Dec 2013 12:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014950 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015116
+ - UBERON:0014933 ; periventricular gray matter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014933 + UBERON:0014951 ; proisocortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014951
-
-AmiGO | QuickGO

]]> + The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions.
+AmiGO | QuickGO

]]>
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014933 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014951
- + + UBERON:0015043 ; manual digit 1 metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015043 + +
+ A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015043 +
+ + UBERON:2200646 ; anal fin distal radial cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200646 @@ -88,18 +101,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200646 - - UBERON:0014852 ; chorda tendinea of right ventricle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014852 - -
- Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014852 -
- UBERON:4300013 ; paired fin radial skeleton http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300013 @@ -113,18 +114,6 @@ - UBERON:0014522 ; dorsolateral oculomotor nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014522 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014522 -
- - UBERON:2000870 ; epaxial region somite 26 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000870 @@ -652,18 +641,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000758 - - UBERON:4200189 ; pedal toe disc - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200189 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200189 -
- UBERON:4200099 ; lateral extrascapular http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200099 @@ -676,18 +653,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200099 - - UBERON:2001900 ; ceratobranchial 2 element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001900 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001900 -
- UBERON:2005113 ; dorsal lateral line neuromast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005113 @@ -701,6 +666,30 @@ + UBERON:4200189 ; pedal toe disc + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200189 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200189 +
+ + + UBERON:2001900 ; ceratobranchial 2 element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001900 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001900 +
+ + UBERON:3010804 ; ramus ventral http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010804 @@ -748,6 +737,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001744 + + UBERON:0014608 ; inferior occipital gyrus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014608 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014608 +
+ UBERON:2000772 ; hypaxial region somite 25 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000772 @@ -772,30 +773,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001979 - - UBERON:0014608 ; inferior occipital gyrus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014608 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014608 -
- - - UBERON:2000802 ; myotome somite 15 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000802 - - uberon/phenoscape-anatomy
- Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000802 -
- UBERON:0014372 ; fibroelastic membrane of larynx http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014372 @@ -820,6 +797,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013750 + + UBERON:2000802 ; myotome somite 15 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000802 + + uberon/phenoscape-anatomy
+ Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000802 +
+ UBERON:2002210 ; mossy fiber http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002210 @@ -952,6 +941,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002008 + + UBERON:0015035 ; pedal digit 5 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015035 + +
+ A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015035 +
+ + + UBERON:0014522 ; dorsolateral oculomotor nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014522 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014522 +
+ UBERON:3010449 ; dorsal marginal zone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010449 @@ -1024,18 +1037,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000295 - - UBERON:0014507 ; distal interphalangeal joint of pedal digit 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014507 - -
- A distal inter-phalangeal joint that is part of the 3rd pedal digit.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014507 -
- UBERON:3000477 ; presumptive nervous system http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000477 @@ -1060,6 +1061,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001361 + + UBERON:0014852 ; chorda tendinea of right ventricle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014852 + +
+ Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014852 +
+ + + UBERON:0014507 ; distal interphalangeal joint of pedal digit 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014507 + +
+ A distal inter-phalangeal joint that is part of the 3rd pedal digit.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014507 +
+ UBERON:2002225 ; posterior pronephric duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002225 @@ -1181,6 +1206,18 @@ + UBERON:0014933 ; periventricular gray matter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014933 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014933 +
+ + UBERON:2001062 ; primitive mesencephalic artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001062 @@ -1192,18 +1229,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001062 - - UBERON:0014794 ; pectoral appendage muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014794 - -
- A muscle organ that is part of a pectoral appendage (forelimb or pectoral fin).
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014794 -
- UBERON:2005220 ; larval melanophore stripe http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005220 @@ -1228,6 +1253,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000291 + + UBERON:0014794 ; pectoral appendage muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014794 + +
+ A muscle organ that is part of a pectoral appendage (forelimb or pectoral fin).
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014794 +
+ UBERON:3010759 ; ramus buccal http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010759 @@ -1240,18 +1277,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010759 - - UBERON:2205382 ; dorsal fin proximal radial cartilage 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205382 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 5 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205382 -
- UBERON:3000813 ; sulcus pro cartilagine praecoracoidealis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000813 @@ -1324,6 +1349,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005379 + + UBERON:2205382 ; dorsal fin proximal radial cartilage 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205382 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 5 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205382 +
+ UBERON:2001861 ; epibranchial 3-pharyngobranchial 3 joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001861 @@ -1360,30 +1397,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014438 - - UBERON:1600006 ; paired fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600006 - - none
- "Radial element that is part of a paired fin." []
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600006 -
- - - UBERON:0014851 ; chorda tendinea of left ventricle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014851 - -
- Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014851 -
- UBERON:0014842 ; pubioischiofemoralis muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014842 @@ -1409,27 +1422,27 @@ - UBERON:2007011 ; obsolete vagal root - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007011 + UBERON:3000061 ; obsolete cartilage bridge of nasal skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000061 uberon/phenoscape-anatomy
- Part of cranial nerve X.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007011 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000061
- UBERON:3000061 ; obsolete cartilage bridge of nasal skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000061 + UBERON:2007011 ; obsolete vagal root + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007011 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Part of cranial nerve X.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000061 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007011
@@ -1456,6 +1469,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005276 + + UBERON:0014757 ; hyperpallium apicale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014757 + +
+ .
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014757 +
+ + + UBERON:0014691 ; right gastric vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014691 + +
+ The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014691 +
+ UBERON:2000093 ; obsolete blastomere http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000093 @@ -1480,18 +1517,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000090 - - UBERON:4200166 ; interepipodial space - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200166 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200166 -
- UBERON:2001584 ; caudal procurrent ray http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001584 @@ -1504,6 +1529,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001584 + + UBERON:4200166 ; interepipodial space + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200166 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200166 +
+ UBERON:2001129 ; pharyngeal pouches 2-6 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001129 @@ -1517,15 +1554,15 @@ - UBERON:2000687 ; superficial pretectum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000687 + UBERON:0014851 ; chorda tendinea of left ventricle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014851 - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> +
+ Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000687 + Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014851
@@ -1540,6 +1577,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200151 + + UBERON:2000687 ; superficial pretectum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000687 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000687 +
+ UBERON:2000197 ; obsolete dorsal nucleus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000197 @@ -1589,27 +1638,15 @@ - UBERON:0014757 ; hyperpallium apicale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014757 - -
- .
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014757 -
- - - UBERON:0014691 ; right gastric vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014691 + UBERON:0014440 ; ischiopubic ramus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014440
- The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation.
-AmiGO | QuickGO

]]> + The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin.
+AmiGO | QuickGO

]]>
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014691 + Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014440
@@ -1624,18 +1661,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100003 - - UBERON:0014440 ; ischiopubic ramus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014440 - -
- The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin.
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014440 -
- UBERON:2005346 ; extrapancreatic duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005346 @@ -2069,15 +2094,27 @@ - UBERON:4300017 ; rostrodermethmoid - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300017 + UBERON:3010457 ; upper blastopore lip + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010457 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010457 +
+ + + UBERON:0013772 ; left nipple + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013772
- "Dermal bone formed by the fusion of dermethmoids and rostral bones. [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]" []
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300017 + Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013772
@@ -2092,18 +2129,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014752 - - UBERON:3010457 ; upper blastopore lip - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010457 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010457 -
- UBERON:2002054 ; vertebra 5-vertebra 6 joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002054 @@ -2116,18 +2141,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002054 - - UBERON:0013772 ; left nipple - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013772 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013772 -
- UBERON:2001664 ; basibranchial 2 tooth plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001664 @@ -2152,6 +2165,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000088 + + UBERON:1600006 ; paired fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600006 + + none
+ "Radial element that is part of a paired fin." []
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600006 +
+ + + UBERON:4300020 ; anal fin basal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300020 + +
+ "The large cartilage of the anal fin, on which the radials articulate distally. [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" []
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300020 +
+ + + UBERON:4300017 ; rostrodermethmoid + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300017 + +
+ "Dermal bone formed by the fusion of dermethmoids and rostral bones. [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]" []
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300017 +
+ UBERON:3000180 ; foramen acusticum anterius http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000180 @@ -2212,18 +2261,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002132 - - UBERON:2002208 ; obsolete mesonephric podocyte - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002208 - - uberon/phenoscape-anatomy
- Podocyte that is part of the kidney (mesonephros).
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002208 -
- UBERON:0014388 ; kidney collecting duct epithelium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014388 @@ -2476,6 +2513,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000662 + + UBERON:2002208 ; obsolete mesonephric podocyte + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002208 + + uberon/phenoscape-anatomy
+ Podocyte that is part of the kidney (mesonephros).
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002208 +
+ UBERON:3010071 ; cranial crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010071 @@ -2524,30 +2573,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000006 - - UBERON:4300020 ; anal fin basal cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300020 - -
- "The large cartilage of the anal fin, on which the radials articulate distally. [Compagno 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" []
-AmiGO | QuickGO

]]> -
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300020 -
- - - UBERON:0014791 ; musculature of forelimb stylopod - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014791 - -
- Any collection of muscles that is part of an arm [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014791 -
- UBERON:3010189 ; ulnar protuberances http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010189 @@ -2572,18 +2597,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001165 - - UBERON:4200063 ; ectocondylar tubercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200063 - -
- "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200063 -
- UBERON:0014882 ; distal epiphysis of distal phalanx of manual digit 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014882 @@ -2596,6 +2609,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014882 + + UBERON:0014791 ; musculature of forelimb stylopod + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014791 + +
+ Any collection of muscles that is part of an arm [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014791 +
+ + + UBERON:4200063 ; ectocondylar tubercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200063 + +
+ "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200063 +
+ UBERON:3000038 ; basimandibulare http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000038 @@ -2608,6 +2645,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000038 + + UBERON:0015077 ; centrale cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015077 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015077 +
+ UBERON:3010668 ; ramules cutaneous http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010668 @@ -2633,27 +2682,27 @@ - UBERON:3000717 ; amphicoelous - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000717 + UBERON:3010013 ; larval chondrocranium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010013 uberon/phenoscape-anatomy
- Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord.
-AmiGO | QuickGO

]]> + Cartilaginous larval skull.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000717 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010013
- UBERON:3010013 ; larval chondrocranium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010013 + UBERON:3000717 ; amphicoelous + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000717 uberon/phenoscape-anatomy
- Cartilaginous larval skull.
-AmiGO | QuickGO

]]> + Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010013 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000717
@@ -2693,15 +2742,15 @@ - UBERON:3010669 ; trunk maxillary-mandibularis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010669 + UBERON:2000611 ; visceromotor column + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000611 uberon/phenoscape-anatomy
- Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010669 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000611
@@ -2717,15 +2766,15 @@ - UBERON:2000611 ; visceromotor column - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000611 + UBERON:3010669 ; trunk maxillary-mandibularis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010669 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000611 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010669
@@ -2740,6 +2789,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000157 + + UBERON:0015018 ; malleus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015018 + +
+ A malleus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015018 +
+ UBERON:2001608 ; autopalatine-lateral ethmoid joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001608 @@ -2753,15 +2814,27 @@ - UBERON:2202277 ; pectoral fin distal radial cartilage 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202277 + UBERON:4200111 ; prepelvic fin spine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 - uberon/phenoscape-anatomy
- pectoral fin distal radial 1 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+ "Fin spine located anterior to the pelvic fin and posterior to the pectoral fin. " []
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202277 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 +
+ + + UBERON:4200126 ; supraacetabular rim + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200126 + +
+ "Bony rim that is part of the supraacetabular region." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200126
@@ -2788,30 +2861,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014761 - - UBERON:4200126 ; supraacetabular rim - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200126 - -
- "Bony rim that is part of the supraacetabular region." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200126 -
- - - UBERON:4200111 ; prepelvic fin spine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 - -
- "Fin spine located anterior to the pelvic fin and posterior to the pectoral fin. " []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200111 -
- UBERON:2000178 ; caudal peduncle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000178 @@ -2837,27 +2886,27 @@ - UBERON:2005022 ; opercular artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005022 + UBERON:2002267 ; epineural 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002267 uberon/phenoscape-anatomy
- The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005022 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002267
- UBERON:2002267 ; epineural 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002267 + UBERON:2005022 ; opercular artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005022 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002267 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005022
@@ -2873,51 +2922,39 @@ - UBERON:2101613 ; dorsal fin middle radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101613 + UBERON:0013757 ; capillary blood + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013757 - none
- Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101613 + Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013757
- UBERON:3010722 ; ramus palatinus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010722 + UBERON:0015053 ; humerus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015053 - uberon/phenoscape-anatomy
- Sensory branch of facial nerve from palatal region.
-AmiGO | QuickGO

]]> +
+ A humerus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010722 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015053
- UBERON:2000340 ; dorsal entopeduncular nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000340 + UBERON:2202277 ; pectoral fin distal radial cartilage 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202277 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000340 -
- - - UBERON:0013757 ; capillary blood - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013757 - -
-
-AmiGO | QuickGO

]]> + pectoral fin distal radial 1 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013757 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202277
@@ -2932,6 +2969,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010326 + + UBERON:3010722 ; ramus palatinus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010722 + + uberon/phenoscape-anatomy
+ Sensory branch of facial nerve from palatal region.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010722 +
+ UBERON:2001431 ; primitive olfactory epithelium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001431 @@ -2945,39 +2994,39 @@ - UBERON:2000185 ; commissura rostral, pars ventralis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000185 + UBERON:2101613 ; dorsal fin middle radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101613 - uberon/phenoscape-anatomy
- Part of the anterior commissure which abuts the preoptic region dorsally.
-AmiGO | QuickGO

]]> + none
+ Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000185 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101613
- UBERON:2000847 ; obsolete slow muscle cell somite 30 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000847 + UBERON:2000340 ; dorsal entopeduncular nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000340 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000847 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000340
- UBERON:3000648 ; crista praeopercularis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000648 + UBERON:2000185 ; commissura rostral, pars ventralis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000185 uberon/phenoscape-anatomy
- Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis.
-AmiGO | QuickGO

]]> + Part of the anterior commissure which abuts the preoptic region dorsally.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000648 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000185
@@ -2993,75 +3042,39 @@ - UBERON:0014917 ; pouch sphincter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014917 - -
- A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out.
-AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014917 -
- - - UBERON:2202028 ; pectoral fin proximal radial cartilage 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202028 + UBERON:3000648 ; crista praeopercularis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000648 uberon/phenoscape-anatomy
- pectoral fin proximal radial 3 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> + Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202028 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000648
- UBERON:2205374 ; dorsal fin distal radial cartilage 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205374 + UBERON:2000847 ; obsolete slow muscle cell somite 30 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000847 uberon/phenoscape-anatomy
- dorsal fin distal radial 3 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205374 -
- - - UBERON:0014871 ; distal epiphysis of distal phalanx of pedal digit 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014871 - -

-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014871 -
- - - UBERON:0014800 ; spinotrapezius muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014800 - -
- Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions.
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014800 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000847
- UBERON:4300029 ; dermal neck joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300029 + UBERON:3000935 ; obsolete scapular area + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000935 -
- Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Dorso-lateral portion of the pectoral girdle.
+AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300029 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000935
@@ -3076,30 +3089,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014731 - - UBERON:0014597 ; paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014597 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014597 -
- - - UBERON:3000935 ; obsolete scapular area - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000935 - - uberon/phenoscape-anatomy
- Dorso-lateral portion of the pectoral girdle.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000935 -
- UBERON:2001228 ; pharyngeal arch 3 skeleton http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001228 @@ -3196,18 +3185,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000793 - - UBERON:0014702 ; frontonasal process epithelium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014702 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014702 -
- UBERON:2001139 ; mediodorsal tooth row http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001139 @@ -3220,6 +3197,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001139 + + UBERON:0015063 ; autopod endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015063 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015063 +
+ + + UBERON:0014702 ; frontonasal process epithelium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014702 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014702 +
+ UBERON:4200108 ; outer digit of hand http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200108 @@ -3340,6 +3341,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3011040 + + UBERON:0015061 ; limb endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015061 + +
+ A limb bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015061 +
+ UBERON:0014649 ; white matter of medulla oblongata http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014649 @@ -3424,18 +3437,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000448 - - UBERON:0014447 ; feathered facial disc - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014447 - -
- A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls.
-AmiGO | QuickGO

]]> -
- Mon, 27 May 2013 22:03:39 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014447 -
- UBERON:2001800 ; cephalic rib http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001800 @@ -3448,6 +3449,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001800 + + UBERON:0014447 ; feathered facial disc + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014447 + +
+ A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls.
+AmiGO | QuickGO

]]> +
+ Mon, 27 May 2013 22:03:39 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014447 +
+ UBERON:3010738 ; M. palmaris profundis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010738 @@ -3472,6 +3485,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000588 + + UBERON:0015051 ; exoccipital endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015051 + +
+ A exoccipital bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015051 +
+ + + UBERON:0014597 ; paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014597 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014597 +
+ UBERON:3000405 ; pars inferior of labyrinth http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000405 @@ -3856,6 +3893,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000955 + + UBERON:2202028 ; pectoral fin proximal radial cartilage 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202028 + + uberon/phenoscape-anatomy
+ pectoral fin proximal radial 3 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202028 +
+ UBERON:2000745 ; epaxial region somite 25 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000745 @@ -3916,6 +3965,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200005 + + UBERON:2105377 ; dorsal fin distal radial element 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105377 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105377 +
+ + + UBERON:0014642 ; vestibulocerebellum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014642 + +
+ A phylogenetic subdivision of the cerenellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014642 +
+ + + UBERON:0014640 ; occipital gyrus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014640 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014640 +
+ UBERON:3010819 ; gastrointestinal peritoneum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010819 @@ -3940,18 +4025,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010078 - - UBERON:0014642 ; vestibulocerebellum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014642 - -
- A phylogenetic subdivision of the cerenellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014642 -
- UBERON:2001778 ; pelvic fin lepidotrichium 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001778 @@ -4372,18 +4445,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014392 - - UBERON:2105377 ; dorsal fin distal radial element 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105377 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105377 -
- UBERON:0014589 ; anterior nucleus of hypothalamus anterior part http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014589 @@ -4396,18 +4457,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014589 - - UBERON:0014640 ; occipital gyrus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014640 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014640 -
- UBERON:2001813 ; preopercular sensory canal http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001813 @@ -4612,18 +4661,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001960 - - UBERON:0014631 ; dorsal gray commissure of spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014631 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014631 -
- UBERON:2000933 ; myotome somite 5 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000933 @@ -4672,6 +4709,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500007 + + UBERON:0014631 ; dorsal gray commissure of spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014631 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014631 +
+ UBERON:2001841 ; interhyal-epihyal joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001841 @@ -4780,6 +4829,66 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005000 + + UBERON:0015112 ; distal tarsal bone 4 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015112 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015112 +
+ + + UBERON:0015022 ; hindlimb endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015022 + +
+ A hindlimb bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015022 +
+ + + UBERON:2205374 ; dorsal fin distal radial cartilage 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205374 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 3 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205374 +
+ + + UBERON:0014871 ; distal epiphysis of distal phalanx of pedal digit 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014871 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014871 +
+ + + UBERON:0014800 ; spinotrapezius muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014800 + +
+ Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014800 +
+ UBERON:2000284 ; subopercle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000284 @@ -4996,6 +5105,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005178 + + UBERON:4300029 ; dermal neck joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300029 + +
+ Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300029 +
+ UBERON:0014503 ; proximal phalanx of digit 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014503 @@ -5008,6 +5129,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014503 + + UBERON:0014917 ; pouch sphincter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014917 + +
+ A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out.
+AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014917 +
+ UBERON:3000896 ; foveal depression http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000896 @@ -5057,15 +5190,15 @@ - UBERON:2201588 ; pectoral fin distal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201588 + UBERON:4200140 ; prepollical element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200140 - uberon/phenoscape-anatomy
- pectoral fin distal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+ "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." []
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201588 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200140
@@ -5081,18 +5214,6 @@ - UBERON:4200140 ; prepollical element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200140 - -
- "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200140 -
- - UBERON:3010515 ; lateral vein http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010515 @@ -5140,18 +5261,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010620 - - UBERON:0014803 ; superior nuchal line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014803 - -
- Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014803 -
- UBERON:2001904 ; epibranchial element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001904 @@ -5164,6 +5273,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001904 + + UBERON:2201588 ; pectoral fin distal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201588 + + uberon/phenoscape-anatomy
+ pectoral fin distal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201588 +
+ + + UBERON:0014803 ; superior nuchal line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014803 + +
+ Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014803 +
+ UBERON:2005273 ; intestinal mucosal muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005273 @@ -5248,18 +5381,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000803 - - UBERON:0014558 ; CA2 stratum lacunosum moleculare - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014558 - -
- Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014558 -
- UBERON:2005223 ; lateral larval melanophore stripe http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005223 @@ -5272,6 +5393,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005223 + + UBERON:0014558 ; CA2 stratum lacunosum moleculare + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014558 + +
+ Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014558 +
+ UBERON:3000473 ; obsolete presumptive epidermis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000473 @@ -5296,18 +5429,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001921 - - UBERON:2102279 ; pectoral fin distal radial element 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102279 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102279 -
- UBERON:2000449 ; torus longitudinalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000449 @@ -5332,6 +5453,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005194 + + UBERON:2102279 ; pectoral fin distal radial element 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102279 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102279 +
+ UBERON:2000838 ; obsolete fast muscle cell somite 29 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000838 @@ -5392,6 +5525,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013767 + + UBERON:0015096 ; distal carpal bone 5 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015096 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015096 +
+ + + UBERON:2105372 ; dorsal fin distal radial element 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105372 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105372 +
+ UBERON:2001770 ; anal fin lepidotrichium 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001770 @@ -5416,18 +5573,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001782 - - UBERON:2105372 ; dorsal fin distal radial element 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105372 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105372 -
- UBERON:3010061 ; anterior quadratocranial commissure http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010061 @@ -5500,6 +5645,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002256 + + UBERON:0015089 ; distal carpal bone 2 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015089 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015089 +
+ UBERON:4200037 ; supinator process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200037 @@ -5537,111 +5694,87 @@ - UBERON:0014930 ; perivascular space - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014930 - -
- The space between a blood vessel and the pia mater.
-AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014930 -
- - - UBERON:2100268 ; anal fin proximal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100268 - - none
- Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100268 -
- - - UBERON:0014891 ; brainstem white matter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014891 + UBERON:2001183 ; dermal superficial region + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001183 -
- White matter that is part of a brainstem [Automatically generated definition].
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014891 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001183
- UBERON:0014881 ; distal epiphysis of distal phalanx of manual digit 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014881 + UBERON:2001316 ; anterior lateral line placode + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001316
-
-AmiGO | QuickGO

]]> + Dorsolateral placode that gives rise to the anterior lateral line.
+AmiGO | QuickGO

]]>
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014881 + Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001316
- UBERON:0014799 ; acromiotrapezius muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014799 + UBERON:0014696 ; anterior choroidal artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014696
- Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together.
-AmiGO | QuickGO

]]> + The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery.
+AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014799 + Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014696
- UBERON:4200172 ; neck of humerus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200172 + UBERON:3010742 ; interhyoideus posterior + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010742 -
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200172 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010742
- UBERON:0014696 ; anterior choroidal artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014696 + UBERON:3000956 ; hypobranchial II + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000956 -
- The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV.
+AmiGO | QuickGO

]]>
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014696 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000956
- UBERON:0014650 ; dorsal hypothalamic nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014650 + UBERON:2002164 ; caudal principal ray set + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002164 -
- A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014650 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002164
- UBERON:2001183 ; dermal superficial region - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001183 + UBERON:4200084 ; preaxial centrale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200084 - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> +
+ "Centrale in the preaxial side of the mesopodium." []
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001183 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200084
@@ -5681,15 +5814,15 @@ - UBERON:2001896 ; hypobranchial 3 element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001896 + UBERON:3000519 ; pseudodentary tooth + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000519 uberon/phenoscape-anatomy
- Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001896 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000519
@@ -5705,15 +5838,15 @@ - UBERON:3000519 ; pseudodentary tooth - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000519 + UBERON:2001896 ; hypobranchial 3 element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001896 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000519 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001896
@@ -5752,18 +5885,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001529 - - UBERON:2005076 ; primordial vasculature - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005076 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005076 -
- UBERON:4200061 ; epicercal tail http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200061 @@ -5776,6 +5897,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200061 + + UBERON:2005076 ; primordial vasculature + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005076 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005076 +
+ UBERON:3000701 ; intervertebral space http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000701 @@ -5801,27 +5934,27 @@ - UBERON:2000973 ; obsolete slow muscle cell somite 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000973 + UBERON:3010813 ; vent glands + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010813 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000973 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010813
- UBERON:3010813 ; vent glands - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010813 + UBERON:2000973 ; obsolete slow muscle cell somite 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000973 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010813 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000973
@@ -5873,63 +6006,63 @@ - UBERON:2001316 ; anterior lateral line placode - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001316 + UBERON:0015014 ; calcaneum endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015014
- Dorsolateral placode that gives rise to the anterior lateral line.
-AmiGO | QuickGO

]]> + A calcaneum bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001316 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015014
- UBERON:3010742 ; interhyoideus posterior - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010742 + UBERON:0014799 ; acromiotrapezius muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014799 - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> +
+ Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010742 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014799
- UBERON:3000956 ; hypobranchial II - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000956 + UBERON:4200172 ; neck of humerus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200172 - uberon/phenoscape-anatomy
- Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000956 + Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200172
- UBERON:2002164 ; caudal principal ray set - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002164 + UBERON:0014650 ; dorsal hypothalamic nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014650 - uberon/phenoscape-anatomy
- Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones.
-AmiGO | QuickGO

]]> +
+ A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002164 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014650
- UBERON:4200084 ; preaxial centrale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200084 + UBERON:2000645 ; descending octaval nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000645 -
- "Centrale in the preaxial side of the mesopodium." []
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200084 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000645
@@ -5944,18 +6077,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001126 - - UBERON:2000645 ; descending octaval nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000645 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000645 -
- UBERON:4200032 ; clavicle blade http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200032 @@ -5968,18 +6089,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200032 - - UBERON:4200169 ; process 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200169 - -
- "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)" []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200169 -
- UBERON:0014711 ; carapacial ridge mesenchyme http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014711 @@ -6017,27 +6126,111 @@ - UBERON:2001675 ; mesethmoid cornu - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001675 + UBERON:0015067 ; centrale endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015067 - uberon/phenoscape-anatomy
- Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft.
-AmiGO | QuickGO

]]> +
+ Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE].
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001675 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015067
- UBERON:4000167 ; caudal fin skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000167 + UBERON:0015060 ; sphenoid endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015060 + +
+ A sphenoid bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015060 +
+ + + UBERON:0015012 ; tarsometatarsus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015012 + +
+ A tarsometatarsus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015012 +
+ + + UBERON:0014930 ; perivascular space + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014930 + +
+ The space between a blood vessel and the pia mater.
+AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014930 +
+ + + UBERON:2100268 ; anal fin proximal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100268 + + none
+ Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100268 +
+ + + UBERON:0014891 ; brainstem white matter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014891 + +
+ White matter that is part of a brainstem [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014891 +
+ + + UBERON:0014881 ; distal epiphysis of distal phalanx of manual digit 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014881 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014881 +
+ + + UBERON:4200169 ; process 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200169 + +
+ "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)" []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200169 +
+ + + UBERON:2001675 ; mesethmoid cornu + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001675 uberon/phenoscape-anatomy
- Median fin skeleton supporting the caudal fin.
-AmiGO | QuickGO

]]> + Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000167 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001675
@@ -6053,15 +6246,15 @@ - UBERON:3010651 ; levator bulbi - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010651 + UBERON:4000167 ; caudal fin skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000167 uberon/phenoscape-anatomy
- One of the principal muscles used in swallowing.
-AmiGO | QuickGO

]]> + Median fin skeleton supporting the caudal fin.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010651 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000167
@@ -6076,6 +6269,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000282 + + UBERON:3010651 ; levator bulbi + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010651 + + uberon/phenoscape-anatomy
+ One of the principal muscles used in swallowing.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010651 +
+ UBERON:3000910 ; obsolete hind limb opening http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000910 @@ -6268,6 +6473,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000119 + + UBERON:0014855 ; posterior leaflet of mitral valve + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014855 + +
+ Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014855 +
+ UBERON:2001658 ; upper pharyngeal tooth plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001658 @@ -6304,18 +6521,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000284 - - UBERON:0014855 ; posterior leaflet of mitral valve - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014855 - -
- Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014855 -
- UBERON:3000441 ; planum triangulare http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000441 @@ -6328,6 +6533,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000441 + + UBERON:3000911 ; foramen nutritium exterius + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000911 + + uberon/phenoscape-anatomy
+ Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000911 +
+ UBERON:0014856 ; cysticercus stage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014856 @@ -6341,15 +6558,15 @@ - UBERON:3000911 ; foramen nutritium exterius - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000911 + UBERON:2000058 ; polster + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000058 uberon/phenoscape-anatomy
- Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula.
-AmiGO | QuickGO

]]> + The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000911 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000058
@@ -6364,18 +6581,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014768 - - UBERON:2000058 ; polster - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000058 - - uberon/phenoscape-anatomy
- The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000058 -
- UBERON:0010001 ; cell cluster organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010001 @@ -6413,15 +6618,27 @@ - UBERON:2001943 ; metapterygoid-autopalatine ligament - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001943 + UBERON:0014778 ; cell group + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 - uberon/phenoscape-anatomy
- Ligament that connects the metapterygoid to the autopalatine.
-AmiGO | QuickGO

]]> +
+ A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001943 + Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 +
+ + + UBERON:0014717 ; mucous acinus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014717 + +
+ The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014717
@@ -6437,27 +6654,27 @@ - UBERON:2000865 ; epaxial region somite 12 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000865 + UBERON:2001943 ; metapterygoid-autopalatine ligament + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001943 uberon/phenoscape-anatomy
- Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> + Ligament that connects the metapterygoid to the autopalatine.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000865 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001943
- UBERON:0014717 ; mucous acinus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014717 + UBERON:2000865 ; epaxial region somite 12 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000865 -
- The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014717 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000865
@@ -6497,30 +6714,6 @@ - UBERON:0014788 ; extraembryonic umbilical vein right - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014788 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014788 -
- - - UBERON:0014778 ; cell group - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 - -
- A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala
-AmiGO | QuickGO

]]> -
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014778 -
- - UBERON:2000756 ; obsolete fast muscle cell somite 24 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000756 @@ -6544,6 +6737,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010463 + + UBERON:0014788 ; extraembryonic umbilical vein right + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014788 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014788 +
+ UBERON:0014463 ; cardiac ganglion http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014463 @@ -6592,6 +6797,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001705 + + UBERON:4300014 ; dorsal cleithrum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300014 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300014 +
+ UBERON:3010560 ; anterior process of the palatoquadrate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010560 @@ -6628,18 +6845,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001587 - - UBERON:4300014 ; dorsal cleithrum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300014 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300014 -
- UBERON:3010203 ; dorsal tail fin http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010203 @@ -6664,18 +6869,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007045 - - UBERON:4100007 ; pectoral articular facet - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100007 - -
- "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE: pm]" []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100007 -
- UBERON:0014775 ; prosomere http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014775 @@ -6688,6 +6881,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014775 + + UBERON:4100007 ; pectoral articular facet + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100007 + +
+ "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995). [PHENOSCAPE: pm]" []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100007 +
+ UBERON:2002112 ; preural 3 vertebra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002112 @@ -6808,6 +7013,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000194 + + UBERON:0014742 ; central nucleus of pallium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014742 + +
+ A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline..
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014742 +
+ UBERON:3010784 ; m. oblique internus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010784 @@ -6928,18 +7145,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000246 - - UBERON:0014742 ; central nucleus of pallium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014742 - -
- A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline..
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014742 -
- UBERON:4100009 ; pedal digit 7 phalanx http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100009 @@ -6977,15 +7182,27 @@ - UBERON:2205377 ; dorsal fin distal radial cartilage 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205377 + UBERON:2001169 ; vertebral element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001169 uberon/phenoscape-anatomy
- dorsal fin distal radial 6 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> + Vertebra that is posteriorly adjacent to vertebra 2.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205377 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001169 +
+ + + UBERON:2001236 ; hypobranchial 2 bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001236 + + uberon/phenoscape-anatomy
+ Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001236
@@ -7012,30 +7229,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014550 - - UBERON:2001169 ; vertebral element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001169 - - uberon/phenoscape-anatomy
- Vertebra that is posteriorly adjacent to vertebra 2.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001169 -
- - - UBERON:2001236 ; hypobranchial 2 bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001236 - - uberon/phenoscape-anatomy
- Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001236 -
- UBERON:2000803 ; myotome somite 18 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000803 @@ -7060,6 +7253,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000718 + + UBERON:2205377 ; dorsal fin distal radial cartilage 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205377 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 6 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205377 +
+ UBERON:2000776 ; hypaxial region somite 6 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000776 @@ -7096,66 +7301,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000292 - - UBERON:2101672 ; dorsal fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101672 - - none
- Dorsal fin radial elements are internal skeletal supports of the dorsal fin.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101672 -
- - - UBERON:4200185 ; entepicondyle fossa - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200185 - -
- "A fossa on the distal humerus proximal to the entepicondyle. " []
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200185 -
- - - UBERON:4300018 ; ventral marginal cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300018 - -
- "In the clasper skeleton, a flat semicylindrical cartilage that is partially fused to the lateral edge of the axial cartilage, and forms the lateral wall of the clasper groove. [Compagno, L. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" []
-AmiGO | QuickGO

]]> -
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300018 -
- - - UBERON:0014525 ; subdivision of internal capsule - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014525 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014525 -
- - - UBERON:0014646 ; nucleus K - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014646 - -
- A nucleus present in the ventral tegmentum of skates.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014646 -
- UBERON:3010489 ; muscular artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010489 @@ -7180,6 +7325,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001340 + + UBERON:0014525 ; subdivision of internal capsule + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014525 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014525 +
+ UBERON:2005248 ; trans-choroid plexus branch http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005248 @@ -7348,6 +7505,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000767 + + UBERON:0014646 ; nucleus K + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014646 + +
+ A nucleus present in the ventral tegmentum of skates.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014646 +
+ UBERON:2001567 ; obsolete oocyte stage I http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001567 @@ -7360,6 +7529,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001567 + + UBERON:2101672 ; dorsal fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101672 + + none
+ Dorsal fin radial elements are internal skeletal supports of the dorsal fin.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101672 +
+ + + UBERON:4200185 ; entepicondyle fossa + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200185 + +
+ "A fossa on the distal humerus proximal to the entepicondyle. " []
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200185 +
+ UBERON:0014753 ; P3 area of pallium (Myxiniformes) http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014753 @@ -7384,18 +7577,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014541 - - UBERON:0014526 ; anterior limb of internal capsule - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014526 - -
- The anterior limb of internal capsule (or frontal part) contains: (1) fibers running from the thalamus to the frontal lobe; (2) fibers connecting the lentiform and caudate nuclei; (3) fibers connecting the cortex with the corpus striatum; and (4) fibers passing from the frontal lobe through the medial fifth of the base of the cerebral peduncle to the nuclei pontis.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014526 -
- UBERON:2002069 ; distal cartilage of posterior process of basipterygium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002069 @@ -7456,6 +7637,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001039 + + UBERON:4300018 ; ventral marginal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300018 + +
+ "In the clasper skeleton, a flat semicylindrical cartilage that is partially fused to the lateral edge of the axial cartilage, and forms the lateral wall of the clasper groove. [Compagno, L. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]" []
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300018 +
+ + + UBERON:0014526 ; anterior limb of internal capsule + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014526 + +
+ The anterior limb of internal capsule (or frontal part) contains: (1) fibers running from the thalamus to the frontal lobe; (2) fibers connecting the lentiform and caudate nuclei; (3) fibers connecting the cortex with the corpus striatum; and (4) fibers passing from the frontal lobe through the medial fifth of the base of the cerebral peduncle to the nuclei pontis.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014526 +
+ UBERON:2001990 ; epibranchial arborescent organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001990 @@ -8176,6 +8381,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000232 + + UBERON:0015090 ; distal carpal bone 3 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015090 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015090 +
+ UBERON:4300034 ; antorbital cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300034 @@ -8465,15 +8682,15 @@ - UBERON:4200079 ; dorsal iliac process - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200079 + UBERON:2002200 ; hypobranchial muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002200 -
- "Posteriordorsal process of the ilium." []
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200079 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002200
@@ -8501,15 +8718,15 @@ - UBERON:2002200 ; hypobranchial muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002200 + UBERON:4200079 ; dorsal iliac process + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200079 - uberon/phenoscape-anatomy
- Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape.
-AmiGO | QuickGO

]]> +
+ "Posteriordorsal process of the ilium." []
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002200 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200079
@@ -8704,6 +8921,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000085 + + UBERON:0014444 ; pubic ramus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014444 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014444 +
+ + + UBERON:0015023 ; phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015023 + +
+ A phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015023 +
+ + + UBERON:0014618 ; middle frontal sulcus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014618 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014618 +
+ UBERON:2005084 ; metencephalic artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005084 @@ -8717,15 +8970,15 @@ - UBERON:0014444 ; pubic ramus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014444 + UBERON:0014375 ; intrinsic muscle of manus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014375

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014444 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014375
@@ -8740,18 +8993,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005233 - - UBERON:0014375 ; intrinsic muscle of manus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014375 - -
-
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014375 -
- UBERON:2001953 ; cranial muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001953 @@ -8800,30 +9041,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005051 - - UBERON:0014916 ; velar vocal fold - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014916 - -
- On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas.
-AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014916 -
- - - UBERON:0014618 ; middle frontal sulcus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014618 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014618 -
- UBERON:2000315 ; asteriscus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000315 @@ -8981,6 +9198,30 @@ + UBERON:0015047 ; manual digit 5 metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015047 + +
+ A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015047 +
+ + + UBERON:0014916 ; velar vocal fold + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014916 + +
+ On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas.
+AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014916 +
+ + UBERON:2005114 ; middle lateral line system http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005114 @@ -9064,6 +9305,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014471 + + UBERON:3000694 ; atlantal cotyle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000694 + + uberon/phenoscape-anatomy
+ Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000694 +
+ + + UBERON:0015086 ; distal carpal bone 1 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015086 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015086 +
+ + + UBERON:0015002 ; radius-ulna endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015002 + +
+ A radius-ulna bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015002 +
+ UBERON:0014913 ; ventral pallium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014913 @@ -9100,30 +9377,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014706 - - UBERON:0014668 ; distal interphalangeal joint of manual digit 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014668 - -
-
-AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014668 -
- - - UBERON:3000694 ; atlantal cotyle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000694 - - uberon/phenoscape-anatomy
- Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000694 -
- UBERON:2001826 ; urohyal median process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001826 @@ -9184,6 +9437,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001865 + + UBERON:0014668 ; distal interphalangeal joint of manual digit 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014668 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014668 +
+ UBERON:4000142 ; obsolete metaplastic ossification http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000142 @@ -9208,18 +9473,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000967 - - UBERON:0014406 ; nauplius stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 - -
- The nauplius stage is characterised by the use of the appendages of the head (the antennae) for swimming. The nauplius is also the stage at which a simple, unpaired eye first appears. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca.
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 -
- UBERON:2001982 ; vertebral element 8 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001982 @@ -9232,6 +9485,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001982 + + UBERON:0014406 ; nauplius stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 + +
+ The nauplius stage is characterised by the use of the appendages of the head (the antennae) for swimming. The nauplius is also the stage at which a simple, unpaired eye first appears. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca.
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014406 +
+ UBERON:2002280 ; pectoral fin distal radial 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002280 @@ -9292,30 +9557,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010802 - - UBERON:3000438 ; planum internasale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000438 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000438 -
- - - UBERON:2105226 ; median fin proximal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105226 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105226 -
- UBERON:0014751 ; P1 area of pallium (Myxiniformes) http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014751 @@ -9328,6 +9569,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014751 + + UBERON:3000438 ; planum internasale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000438 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000438 +
+ UBERON:2002195 ; epidermal placode http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002195 @@ -9364,18 +9617,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000759 - - UBERON:2001975 ; suprabranchial artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001975 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001975 -
- UBERON:0014287 ; medial accessory olive http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014287 @@ -9389,27 +9630,39 @@ - UBERON:4300005 ; aphakic space - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300005 + UBERON:2105226 ; median fin proximal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105226 -
- "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision. " []
-AmiGO | QuickGO

]]> + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105226 +
+ + + UBERON:2001975 ; suprabranchial artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001975 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300005 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001975
- UBERON:0013777 ; skin of palm of manus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013777 + UBERON:4300005 ; aphakic space + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300005
-
-AmiGO | QuickGO

]]> + "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision. " []
+AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013777 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300005
@@ -9424,6 +9677,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010627 + + UBERON:0013777 ; skin of palm of manus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013777 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013777 +
+ UBERON:2001798 ; epicentral http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001798 @@ -9472,6 +9737,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000475 + + UBERON:2000689 ; supracommissural nucleus of V + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000689 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000689 +
+ UBERON:3010284 ; obsolete vegetal blastomere http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010284 @@ -9508,18 +9785,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000222 - - UBERON:2000689 ; supracommissural nucleus of V - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000689 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000689 -
- UBERON:2000843 ; obsolete slow muscle cell somite 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000843 @@ -9545,27 +9810,27 @@ - UBERON:4200179 ; manual claw - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200179 + UBERON:0014672 ; distal interphalangeal joint of pedal digit 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014672

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200179 + Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014672
- UBERON:0014672 ; distal interphalangeal joint of pedal digit 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014672 + UBERON:2005183 ; obsolete MiD2i + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005183 -
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014672 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005183
@@ -9580,18 +9845,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014569 - - UBERON:2005183 ; obsolete MiD2i - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005183 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005183 -
- UBERON:2000718 ; epaxial region somite 27 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000718 @@ -9640,6 +9893,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002077 + + UBERON:4200179 ; manual claw + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200179 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200179 +
+ UBERON:4000141 ; obsolete intramembranous ossification http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000141 @@ -9664,18 +9929,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002276 - - UBERON:0014716 ; interlobular duct - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014716 - -
- A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014716 -
- UBERON:2001724 ; caudal principal ray 12 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001724 @@ -9688,6 +9941,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001724 + + UBERON:0015009 ; lumbar vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015009 + +
+ A lumbar vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015009 +
+ UBERON:3010286 ; obsolete chondrocyte {is_obsolete="true"} http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010286 @@ -9700,6 +9965,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010286 + + UBERON:0014716 ; interlobular duct + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014716 + +
+ A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014716 +
+ UBERON:0013753 ; distal epiphysis of metacarpal bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013753 @@ -9736,6 +10013,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014452 + + UBERON:2201417 ; pelvic fin distal radial cartilage 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201417 + + uberon/phenoscape-anatomy
+ pelvic fin distal radial 1 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201417 +
+ + + UBERON:0014861 ; glaucothoe stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014861 + +
+ a developmental stage in a hermit crab that has completed the swimming larval stages.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014861 +
+ + + UBERON:4200173 ; dorsal ridge + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200173 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200173 +
+ UBERON:0014592 ; anterior nucleus of hypothalamus dorsal part http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014592 @@ -9784,42 +10097,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001397 - - UBERON:2201417 ; pelvic fin distal radial cartilage 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201417 - - uberon/phenoscape-anatomy
- pelvic fin distal radial 1 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201417 -
- - - UBERON:0014861 ; glaucothoe stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014861 - -
- a developmental stage in a hermit crab that has completed the swimming larval stages.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014861 -
- - - UBERON:4200173 ; dorsal ridge - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200173 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200173 -
- UBERON:2001546 ; neural spine 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001546 @@ -9952,6 +10229,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000599 + + UBERON:0015105 ; distal tarsal bone 2 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015105 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015105 +
+ UBERON:3010552 ; obsolete gastrula cell http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010552 @@ -10048,18 +10337,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000624 - - UBERON:0014888 ; iliotibialis muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014888 - -
- A muscle in amphibians that connects originates in the ilium and inserts in the tibia.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014888 -
- UBERON:2001016 ; myotome somite 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001016 @@ -10096,6 +10373,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000059 + + UBERON:0015057 ; scapula endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015057 + +
+ A scapula bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015057 +
+ + + UBERON:0014888 ; iliotibialis muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014888 + +
+ A muscle in amphibians that connects originates in the ilium and inserts in the tibia.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014888 +
+ UBERON:2005409 ; pars superior ear http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005409 @@ -10168,18 +10469,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000884 - - UBERON:0014876 ; distal epiphysis of distal phalanx of pedal digit - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014876 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014876 -
- UBERON:2001046 ; sclerotome somite 8 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001046 @@ -10204,6 +10493,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3001000 + + UBERON:0015093 ; distal carpal bone 4 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015093 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015093 +
+ + + UBERON:0015015 ; supraoccipital endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015015 + +
+ A supraoccipital bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015015 +
+ + + UBERON:2202027 ; pectoral fin proximal radial cartilage 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202027 + + uberon/phenoscape-anatomy
+ pectoral fin proximal radial 2 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202027 +
+ + + UBERON:0014876 ; distal epiphysis of distal phalanx of pedal digit + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014876 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014876 +
+ UBERON:2001003 ; obsolete muscle pioneer somite 12 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001003 @@ -10264,6 +10601,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005231 + + UBERON:0014785 ; levator cloacae + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014785 + +
+ a long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus.
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014785 +
+ UBERON:4000134 ; ossified tendon http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000134 @@ -10288,66 +10637,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014457 - - UBERON:2202027 ; pectoral fin proximal radial cartilage 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202027 - - uberon/phenoscape-anatomy
- pectoral fin proximal radial 2 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202027 -
- - - UBERON:4200182 ; lateral tubercle of astragalus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200182 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200182 -
- - - UBERON:4300028 ; posterior ventrolateral plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300028 - -
- Dermal bone that is part of the scapular complex in placoderms.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300028 -
- - - UBERON:0014785 ; levator cloacae - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014785 - -
- a long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus.
-AmiGO | QuickGO

]]> -
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014785 -
- - - UBERON:0014530 ; lamina of neuraxis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014530 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014530 -
- UBERON:4200029 ; adductor crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200029 @@ -10432,6 +10721,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007041 + + UBERON:4200182 ; lateral tubercle of astragalus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200182 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200182 +
+ UBERON:2002131 ; obsolete horizontal septum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002131 @@ -10588,6 +10889,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010295 + + UBERON:0013771 ; intermammary line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013771 + +
+ Line connecting a pair of nipples.
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013771 +
+ + + UBERON:0014530 ; lamina of neuraxis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014530 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014530 +
+ UBERON:2002101 ; branchiostegal ray series http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002101 @@ -10601,15 +10926,27 @@ - UBERON:0013771 ; intermammary line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013771 + UBERON:0015054 ; iliac endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015054
- Line connecting a pair of nipples.
-AmiGO | QuickGO

]]> + A iliac bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013771 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015054 +
+ + + UBERON:4300028 ; posterior ventrolateral plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300028 + +
+ Dermal bone that is part of the scapular complex in placoderms.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300028
@@ -10757,15 +11094,51 @@ - UBERON:2002071 ; distal cartilage of internal anterior process of basipterygium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002071 + UBERON:0015080 ; proximal carpal bone pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015080 - uberon/phenoscape-anatomy
- Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002071 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015080 +
+ + + UBERON:4300038 ; facet + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300038 + +
+ A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300038 +
+ + + UBERON:4200176 ; ascending process of clavicle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200176 + +
+ "A bony dorsal extension of the clavicle." []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200176 +
+ + + UBERON:4300016 ; pelvic cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300016 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300016
@@ -10780,6 +11153,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014692 + + UBERON:2002071 ; distal cartilage of internal anterior process of basipterygium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002071 + + uberon/phenoscape-anatomy
+ Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002071 +
+ UBERON:2001542 ; pelvic radial 1 cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001542 @@ -10816,126 +11201,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001230 - - UBERON:0014912 ; thalamic eminence - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014912 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014912 -
- - - UBERON:2102028 ; pectoral fin proximal radial element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102028 - - none
- Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102028 -
- - - UBERON:2101818 ; dorsal fin proximal radial element 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101818 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101818 -
- - - UBERON:1700006 ; paired fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1700006 - - none
- paired fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1700006 -
- - - UBERON:0014889 ; left hemisphere of cerebellum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014889 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014889 -
- - - UBERON:4300038 ; facet - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300038 - -
- A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300038 -
- - - UBERON:0014844 ; pubioischiofemoralis externus muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014844 - -
- A ventral muscle of lower tetrapods that runs from the pubis and ischium to the femur.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014844 -
- - - UBERON:4200176 ; ascending process of clavicle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200176 - -
- "A bony dorsal extension of the clavicle." []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200176 -
- - - UBERON:4300016 ; pelvic cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300016 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300016 -
- - - UBERON:0014549 ; CA2 stratum pyramidale hippocampi - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014549 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014549 -
- UBERON:3010044 ; dorsal crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010044 @@ -10984,6 +11249,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000517 + + UBERON:0014549 ; CA2 stratum pyramidale hippocampi + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014549 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014549 +
+ UBERON:2001147 ; tooth 2MD http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001147 @@ -11020,30 +11297,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010543 - - UBERON:2000735 ; hemal postzygapophysis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000735 - - uberon/phenoscape-anatomy
- Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000735 -
- - - UBERON:4200150 ; accessory foramina - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200150 - -
- "Foramina found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen \"c\" and \"d\" after Jarvik 1996" []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200150 -
- UBERON:0014502 ; proximal phalanx of digit 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014502 @@ -11056,6 +11309,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014502 + + UBERON:2000735 ; hemal postzygapophysis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000735 + + uberon/phenoscape-anatomy
+ Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000735 +
+ UBERON:0014632 ; apex of lumbar spinal cord dorsal horn http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014632 @@ -11104,6 +11369,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010082 + + UBERON:4200150 ; accessory foramina + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200150 + +
+ "Foramina found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen \"c\" and \"d\" after Jarvik 1996" []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200150 +
+ UBERON:2002264 ; epineural 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002264 @@ -11152,18 +11429,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005078 - - UBERON:0014758 ; interstitial part of hyperpallium apicale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014758 - -
- .
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014758 -
- UBERON:2002053 ; bony plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002053 @@ -11176,6 +11441,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002053 + + UBERON:0014758 ; interstitial part of hyperpallium apicale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014758 + +
+ .
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014758 +
+ UBERON:3000661 ; crista vomeri http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000661 @@ -11344,6 +11621,66 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000174 + + UBERON:0015115 ; distal tarsal bone 5 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015115 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015115 +
+ + + UBERON:0015034 ; pedal digit 4 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015034 + +
+ A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015034 +
+ + + UBERON:2102028 ; pectoral fin proximal radial element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102028 + + none
+ Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102028 +
+ + + UBERON:2101586 ; pectoral fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101586 + + none
+ Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101586 +
+ + + UBERON:0014621 ; cervical spinal cord ventral horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014621 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014621 +
+ UBERON:3000515 ; pseudoangular http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000515 @@ -11404,6 +11741,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000848 + + UBERON:2201415 ; pelvic fin distal radial cartilage 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201415 + + uberon/phenoscape-anatomy
+ pelvic fin distal radial 2 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201415 +
+ UBERON:0014529 ; lenticular fasciculus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014529 @@ -11428,18 +11777,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005378 - - UBERON:2201415 ; pelvic fin distal radial cartilage 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201415 - - uberon/phenoscape-anatomy
- pelvic fin distal radial 2 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201415 -
- UBERON:2002237 ; obsolete pronephric podocyte http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002237 @@ -11500,18 +11837,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000087 - - UBERON:2101586 ; pectoral fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101586 - - none
- Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101586 -
- UBERON:3010683 ; distal-most prepollical element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010683 @@ -11596,18 +11921,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005174 - - UBERON:0014621 ; cervical spinal cord ventral horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014621 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014621 -
- UBERON:2000987 ; hypaxial region somite 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000987 @@ -11633,15 +11946,39 @@ - UBERON:3000565 ; skeletal support for eminentia olfactoria - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000565 + UBERON:4200159 ; ventral ridge system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200159 - uberon/phenoscape-anatomy
- Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria.
-AmiGO | QuickGO

]]> +
+ "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)" []
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000565 + Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200159 +
+ + + UBERON:4300012 ; clavus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300012 + +
+ "A rudder-like lobe formed from extensions of dorsal and anal fin rays." []
+AmiGO | QuickGO

]]> +
+ Wed, 28 Aug 2013 15:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300012 +
+ + + UBERON:0014682 ; tooth whorl + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014682 + +
+ A spirally arranged cluster of teeth
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014682
@@ -11657,27 +11994,39 @@ - UBERON:2001539 ; basipterygium cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001539 + UBERON:0014607 ; thoracic spinal cord lateral horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014607 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014607 +
+ + + UBERON:3000565 ; skeletal support for eminentia olfactoria + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000565 uberon/phenoscape-anatomy
- Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962).
-AmiGO | QuickGO

]]> + Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001539 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000565
- UBERON:4300012 ; clavus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300012 + UBERON:2001539 ; basipterygium cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001539 -
- "A rudder-like lobe formed from extensions of dorsal and anal fin rays." []
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962).
+AmiGO | QuickGO

]]>
- Wed, 28 Aug 2013 15:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300012 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001539
@@ -11788,42 +12137,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000797 - - UBERON:4200159 ; ventral ridge system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200159 - -
- "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)" []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200159 -
- - - UBERON:0014682 ; tooth whorl - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014682 - -
- A spirally arranged cluster of teeth
-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014682 -
- - - UBERON:0014607 ; thoracic spinal cord lateral horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014607 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014607 -
- UBERON:2001172 ; roofing cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001172 @@ -11861,27 +12174,27 @@ - UBERON:3010566 ; prootic foramen - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010566 + UBERON:2002199 ; hindbrain commissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002199 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + CNS white matter that crosses the midline within the hindbrain.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010566 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002199
- UBERON:2002199 ; hindbrain commissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002199 + UBERON:3010566 ; prootic foramen + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010566 uberon/phenoscape-anatomy
- CNS white matter that crosses the midline within the hindbrain.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002199 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010566
@@ -11897,15 +12210,63 @@ - UBERON:2001257 ; medial floor plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001257 + UBERON:0015052 ; femur endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015052 + +
+ A femur bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015052 +
+ + + UBERON:0015029 ; manual digit 5 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015029 + +
+ A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015029 +
+ + + UBERON:2205378 ; dorsal fin distal radial cartilage 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205378 uberon/phenoscape-anatomy
- The medial portion of the spinal cord floor plate, located adjacent to the notochord.
-AmiGO | QuickGO

]]> + dorsal fin distal radial 7 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001257 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205378 +
+ + + UBERON:2205375 ; dorsal fin distal radial cartilage 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205375 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 4 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205375 +
+ + + UBERON:0014804 ; median nuchal line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014804 + +
+ Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014804
@@ -11920,6 +12281,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014779 + + UBERON:0014479 ; elephant trunk + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014479 + +
+ An appendage formed by the fusion of the nose and upper lip.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014479 +
+ + + UBERON:2001257 ; medial floor plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001257 + + uberon/phenoscape-anatomy
+ The medial portion of the spinal cord floor plate, located adjacent to the notochord.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001257 +
+ UBERON:2001971 ; parapophysis 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001971 @@ -11980,18 +12365,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000205 - - UBERON:3010324 ; obsolete zygote - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010324 - - uberon/phenoscape-anatomy
- Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010324 -
- UBERON:0014380 ; flexor digitorum brevis muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014380 @@ -12005,27 +12378,27 @@ - UBERON:3010650 ; cephalodorsosubpharyngeus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010650 + UBERON:3010324 ; obsolete zygote + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010324 uberon/phenoscape-anatomy
- One of the principal muscles used in swallowing.
-AmiGO | QuickGO

]]> + Diploid cell produced by the fusion of sperm cell nucleus and egg cell.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010650 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010324
- UBERON:2002129 ; caudal rod - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002129 + UBERON:3010650 ; cephalodorsosubpharyngeus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010650 uberon/phenoscape-anatomy
- Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage.
-AmiGO | QuickGO

]]> + One of the principal muscles used in swallowing.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002129 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010650
@@ -12041,15 +12414,15 @@ - UBERON:2001821 ; notochord posterior region - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001821 + UBERON:2002129 ; caudal rod + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002129 uberon/phenoscape-anatomy
- Portion of tissue that is part of the caudal fin.
-AmiGO | QuickGO

]]> + Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001821 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002129
@@ -12065,15 +12438,15 @@ - UBERON:3010224 ; vertebral - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010224 + UBERON:2001821 ; notochord posterior region + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001821 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Portion of tissue that is part of the caudal fin.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010224 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001821
@@ -12089,63 +12462,27 @@ - UBERON:3010005 ; obsolete muscular process - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010005 + UBERON:3010224 ; vertebral + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010224 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010005 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010224
- UBERON:2205378 ; dorsal fin distal radial cartilage 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205378 + UBERON:3010005 ; obsolete muscular process + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010005 uberon/phenoscape-anatomy
- dorsal fin distal radial 7 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205378 -
- - - UBERON:0014804 ; median nuchal line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014804 - -
- Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014804 -
- - - UBERON:0014792 ; musculature of pelvic complex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014792 - -
- Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014792 -
- - - UBERON:0014479 ; elephant trunk - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014479 - -
- An appendage formed by the fusion of the nose and upper lip.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014479 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010005
@@ -12185,27 +12522,15 @@ - UBERON:2002009 ; medial cartilage of palatine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002009 - - uberon/phenoscape-anatomy
- Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002009 -
- - - UBERON:2001472 ; anterior lateral line neuromast - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001472 + UBERON:0014792 ; musculature of pelvic complex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014792 - uberon/phenoscape-anatomy
- Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
-AmiGO | QuickGO

]]> +
+ Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001472 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014792
@@ -12221,15 +12546,27 @@ - UBERON:3010587 ; hyoid arch neural crest - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010587 + UBERON:2001472 ; anterior lateral line neuromast + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001472 uberon/phenoscape-anatomy
- Population of cranial neural crest that give rise to hyoid arch elements.
-AmiGO | QuickGO

]]> + Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010587 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001472 +
+ + + UBERON:2002009 ; medial cartilage of palatine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002009 + + uberon/phenoscape-anatomy
+ Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002009
@@ -12245,15 +12582,15 @@ - UBERON:0014637 ; thoracic spinal cord white matter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014637 + UBERON:3010587 ; hyoid arch neural crest + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010587 -
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Population of cranial neural crest that give rise to hyoid arch elements.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014637 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010587
@@ -12268,6 +12605,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010089 + + UBERON:0014637 ; thoracic spinal cord white matter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014637 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014637 +
+ UBERON:2005245 ; inter-parietal joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005245 @@ -12304,18 +12653,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002174 - - UBERON:3000192 ; foramen perilymphaticum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000192 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000192 -
- UBERON:0014506 ; distal interphalangeal joint of digit 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014506 @@ -12328,6 +12665,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014506 + + UBERON:3000192 ; foramen perilymphaticum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000192 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000192 +
+ UBERON:3000041 ; Bidder's organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000041 @@ -12364,18 +12713,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000763 - - UBERON:2205375 ; dorsal fin distal radial cartilage 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205375 - - uberon/phenoscape-anatomy
- dorsal fin distal radial 4 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205375 -
- UBERON:2000384 ; levator arcus palatini http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000384 @@ -12472,18 +12809,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000512 - - UBERON:2001359 ; pineal complex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001359 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001359 -
- UBERON:0014899 ; anterolateral ligament of knee http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014899 @@ -12497,6 +12822,18 @@ + UBERON:2001359 ; pineal complex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001359 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001359 +
+ + UBERON:2001463 ; melanophore stripe http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001463 @@ -12520,6 +12857,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010554 + + UBERON:0014850 ; hemomonochorial placental membrane + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014850 + +
+ A placental membrane that consists of a single layer of syncytiotrophoblast at term.
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014850 +
+ + + UBERON:4200167 ; mesial pelvic ridge + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200167 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200167 +
+ UBERON:2005205 ; obsolete RoM2l http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005205 @@ -12533,15 +12894,15 @@ - UBERON:2002086 ; pelvic axillary process - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002086 + UBERON:3000655 ; processus dorsalis of lamella alaris + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000655 uberon/phenoscape-anatomy
- Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray.
-AmiGO | QuickGO

]]> + Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002086 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000655
@@ -12557,15 +12918,15 @@ - UBERON:0014850 ; hemomonochorial placental membrane - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014850 + UBERON:2002086 ; pelvic axillary process + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002086 -
- A placental membrane that consists of a single layer of syncytiotrophoblast at term.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray.
+AmiGO | QuickGO

]]>
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014850 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002086
@@ -12580,18 +12941,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010818 - - UBERON:3000655 ; processus dorsalis of lamella alaris - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000655 - - uberon/phenoscape-anatomy
- Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000655 -
- UBERON:3001005 ; dorsolateral fold http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3001005 @@ -12604,42 +12953,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3001005 - - UBERON:2105376 ; dorsal fin distal radial element 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105376 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105376 -
- - - UBERON:4200167 ; mesial pelvic ridge - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200167 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200167 -
- - - UBERON:0014760 ; gustatory nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014760 - -
- The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 ).
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014760 -
- UBERON:0014461 ; infratemporal fenestra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014461 @@ -12676,6 +12989,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010274 + + UBERON:0015004 ; tibia endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015004 + +
+ A tibia bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015004 +
+ + + UBERON:0014760 ; gustatory nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014760 + +
+ The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 ).
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014760 +
+ + + UBERON:0014648 ; hemisphere part of cerebellar posterior lobe + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014648 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014648 +
+ UBERON:1500000 ; scapular blade http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500000 @@ -12700,18 +13049,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002083 - - UBERON:0014648 ; hemisphere part of cerebellar posterior lobe - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014648 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014648 -
- UBERON:3000981 ; limb external integument structure http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000981 @@ -12796,6 +13133,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3011081 + + UBERON:0015108 ; distal tarsal bone 3 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015108 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015108 +
+ UBERON:2000508 ; pelvic fin radial http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000508 @@ -12976,6 +13325,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002022 + + UBERON:2105376 ; dorsal fin distal radial element 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105376 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105376 +
+ UBERON:2001846 ; inter-ventral hypohyal joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001846 @@ -13204,18 +13565,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001481 - - UBERON:0014690 ; left gastric vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014690 - -
- The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system.
-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014690 -
- UBERON:2001741 ; trigeminofacial foramen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001741 @@ -13240,6 +13589,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001898 + + UBERON:0014690 ; left gastric vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014690 + +
+ The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014690 +
+ UBERON:2000098 ; proliferative region http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000098 @@ -13348,18 +13709,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001614 - - UBERON:0014539 ; precommissural fornix of forebrain - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014539 - -
- Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014539 -
- UBERON:3010787 ; pars transversalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010787 @@ -13408,6 +13757,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001516 + + UBERON:0014844 ; pubioischiofemoralis externus muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014844 + +
+ A ventral muscle of lower tetrapods that runs from the pubis and ischium to the femur.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014844 +
+ + + UBERON:0014539 ; precommissural fornix of forebrain + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014539 + +
+ Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014539 +
+ UBERON:2000637 ; claustrum cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000637 @@ -13480,18 +13853,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001727 - - UBERON:0014697 ; posterior choroidal artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014697 - -
-
-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014697 -
- UBERON:4200083 ; postaxial centrale http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200083 @@ -13540,6 +13901,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010692 + + UBERON:0014697 ; posterior choroidal artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014697 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014697 +
+ UBERON:4200107 ; obturator process of ischium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200107 @@ -13648,6 +14021,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010712 + + UBERON:0015087 ; distal carpal bone 2 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015087 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015087 +
+ + + UBERON:0015031 ; pedal digit 1 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015031 + +
+ A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015031 +
+ + + UBERON:2101818 ; dorsal fin proximal radial element 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101818 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101818 +
+ + + UBERON:2200947 ; dorsal fin proximal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200947 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200947 +
+ UBERON:2001974 ; subtemporal fossa http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001974 @@ -13756,18 +14177,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000068 - - UBERON:2200947 ; dorsal fin proximal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200947 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200947 -
- UBERON:3000746 ; urostyle ridge http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000746 @@ -13804,6 +14213,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001475 + + UBERON:0015041 ; pedal digit 5 metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015041 + +
+ A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015041 +
+ UBERON:0014732 ; compound cell cluster organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014732 @@ -14092,18 +14513,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000321 - - UBERON:3000647 ; crista interna - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000647 - - uberon/phenoscape-anatomy
- Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000647 -
- UBERON:0013765 ; digestive system organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013765 @@ -14116,6 +14525,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013765 + + UBERON:3000647 ; crista interna + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000647 + + uberon/phenoscape-anatomy
+ Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000647 +
+ UBERON:2001647 ; pharyngeal tooth plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001647 @@ -14141,6 +14562,54 @@ + UBERON:4000007 ; obsolete basihyal bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000007 + + uberon/phenoscape-anatomy
+ Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000007 +
+ + + UBERON:0015078 ; proximal carpal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015078 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015078 +
+ + + UBERON:0015010 ; sacral vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015010 + +
+ A sacral vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015010 +
+ + + UBERON:0014950 ; layer of developing cerebral cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014950 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014950 +
+ + UBERON:0014883 ; distal epiphysis of distal phalanx of manual digit 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014883 @@ -14153,15 +14622,15 @@ - UBERON:4000007 ; obsolete basihyal bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000007 + UBERON:0014762 ; fused metapodial bones 2-4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014762 - uberon/phenoscape-anatomy
- Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch.
-AmiGO | QuickGO

]]> +
+ An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4).
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000007 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014762
@@ -14260,18 +14729,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005189 - - UBERON:0014762 ; fused metapodial bones 2-4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014762 - -
- An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4).
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014762 -
- UBERON:2000922 ; obsolete muscle pioneer somite 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000922 @@ -14332,18 +14789,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001654 - - UBERON:0014286 ; dorsal cap of Kooy - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014286 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014286 -
- UBERON:2001699 ; dorsal-fin stay http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001699 @@ -14356,6 +14801,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001699 + + UBERON:0014286 ; dorsal cap of Kooy + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014286 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014286 +
+ UBERON:3000431 ; pila antoptica http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000431 @@ -14380,18 +14837,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001393 - - UBERON:0014885 ; distal epiphysis of distal phalanx of manual digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014885 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014885 -
- UBERON:2001969 ; inner mental barbel http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001969 @@ -14440,6 +14885,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001265 + + UBERON:0015064 ; autopod cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015064 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015064 +
+ UBERON:3000380 ; palatoquadrate articular process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000380 @@ -14452,6 +14909,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000380 + + UBERON:0014885 ; distal epiphysis of distal phalanx of manual digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014885 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014885 +
+ UBERON:2000120 ; lateral line ganglion http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000120 @@ -14488,18 +14957,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010657 - - UBERON:4200051 ; cotyloid notch - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200051 - -
- "A notch or opening in the ventral part of the acetabular rim." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200051 -
- UBERON:0014719 ; intralobular duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014719 @@ -14512,6 +14969,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014719 + + UBERON:4200051 ; cotyloid notch + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200051 + +
+ "A notch or opening in the ventral part of the acetabular rim." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200051 +
+ UBERON:2005192 ; obsolete RoI2C http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005192 @@ -14561,6 +15030,18 @@ + UBERON:0015062 ; bone condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015062 + +
+ A delimited region of osteoblasts representing the early stages of bone formation.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015062 +
+ + UBERON:2001875 ; opercular series http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001875 @@ -14620,6 +15101,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014436 + + UBERON:1700006 ; paired fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1700006 + + none
+ paired fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1700006 +
+ UBERON:2001171 ; os suspensorium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001171 @@ -14681,15 +15174,15 @@ - UBERON:0010000 ; multicellular anatomical structure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010000 + UBERON:0015046 ; manual digit 4 metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015046
- An anatomical structure that has more than one cell as a part.
-AmiGO | QuickGO

]]> + A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010000 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015046
@@ -14753,27 +15246,15 @@ - UBERON:0014776 ; mesomere - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014776 - -
- "A neuromere that is part of the presumptive midbrain" []
-AmiGO | QuickGO

]]> -
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014776 -
- - - UBERON:0014571 ; CA3 alveus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014571 + UBERON:0010000 ; multicellular anatomical structure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010000
- Part of alveus lying within hippocampal sector CA3
-AmiGO | QuickGO

]]> + An anatomical structure that has more than one cell as a part.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014571 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0010000
@@ -14788,6 +15269,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000263 + + UBERON:0014571 ; CA3 alveus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014571 + +
+ Part of alveus lying within hippocampal sector CA3
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014571 +
+ UBERON:2005068 ; bulbus arteriosus inner layer http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005068 @@ -14824,6 +15317,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001242 + + UBERON:0014776 ; mesomere + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014776 + +
+ "A neuromere that is part of the presumptive midbrain" []
+AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014776 +
+ UBERON:3010240 ; Nobelian rod http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010240 @@ -14932,6 +15437,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001476 + + UBERON:0015068 ; distal carpal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015068 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015068 +
+ + + UBERON:0014912 ; thalamic eminence + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014912 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014912 +
+ + + UBERON:0014889 ; left hemisphere of cerebellum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014889 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014889 +
+ UBERON:3010583 ; basibranchial I http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010583 @@ -15016,18 +15557,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000735 - - UBERON:2101819 ; dorsal fin proximal radial element 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101819 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101819 -
- UBERON:2001857 ; hyoidean artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001857 @@ -15040,6 +15569,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001857 + + UBERON:2101819 ; dorsal fin proximal radial element 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101819 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101819 +
+ UBERON:0014475 ; endostylar duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014475 @@ -15089,15 +15630,15 @@ - UBERON:2100508 ; pelvic fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100508 + UBERON:2002218 ; parallel fiber + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002218 - none
- Pelvic fin radial elements are internal skeletal supports of the pelvic fin.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100508 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002218
@@ -15148,18 +15689,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014600 - - UBERON:2002218 ; parallel fiber - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002218 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002218 -
- UBERON:3010529 ; ovisac http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010529 @@ -15388,6 +15917,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005018 + + UBERON:0014754 ; P4 area of pallium (Myxiniformes) + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014754 + +
+ Area directly deep to the P3 area of pallium in hagfishes.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014754 +
+ UBERON:2000666 ; filamental artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000666 @@ -15472,6 +16013,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001880 + + UBERON:4200026 ; supraglenoid foramen + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200026 + +
+ "Foramen that perforates supraglenoid buttress." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200026 +
+ UBERON:0014437 ; iliac crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014437 @@ -15485,27 +16038,39 @@ - UBERON:0014754 ; P4 area of pallium (Myxiniformes) - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014754 + UBERON:0015058 ; alisphenoid endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015058
- Area directly deep to the P3 area of pallium in hagfishes.
-AmiGO | QuickGO

]]> + A alisphenoid bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014754 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015058
- UBERON:4200026 ; supraglenoid foramen - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200026 + UBERON:2100508 ; pelvic fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100508 + + none
+ Pelvic fin radial elements are internal skeletal supports of the pelvic fin.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100508 +
+ + + UBERON:4300023 ; interolateral plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300023
- "Foramen that perforates supraglenoid buttress." []
-AmiGO | QuickGO

]]> + Dermal bone that is part of the scapular complex in placoderms.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200026 + Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300023
@@ -15520,6 +16085,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014701 + + UBERON:0014729 ; striated duct of salivary gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014729 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014729 +
+ + + UBERON:0014593 ; tuberomammillary nucleus dorsal part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014593 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014593 +
+ UBERON:3000645 ; corpus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000645 @@ -15556,30 +16145,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013759 - - UBERON:0014755 ; P5 area of pallium (Myxiniformes) - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014755 - -
- Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014755 -
- - - UBERON:0014540 ; lamina of cerebellum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014540 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014540 -
- UBERON:4200069 ; sternal keel http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200069 @@ -15604,6 +16169,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001239 + + UBERON:0014755 ; P5 area of pallium (Myxiniformes) + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014755 + +
+ Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014755 +
+ + + UBERON:0014540 ; lamina of cerebellum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014540 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014540 +
+ UBERON:2002110 ; metapterygoid-quadrate fenestra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002110 @@ -15664,18 +16253,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000644 - - UBERON:2201672 ; dorsal fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201672 - - uberon/phenoscape-anatomy
- dorsal fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201672 -
- UBERON:4200154 ; metapodium bone 6 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200154 @@ -15724,6 +16301,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001855 + + UBERON:2201672 ; dorsal fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201672 + + uberon/phenoscape-anatomy
+ dorsal fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201672 +
+ UBERON:4200000 ; medial blade of ilium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200000 @@ -15784,66 +16373,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000615 - - UBERON:1600008 ; pelvic fin distal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600008 - - none
- "Pelvic fin radial element that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radial elements are paired." []
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600008 -
- - - UBERON:0014860 ; copepodite stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014860 - -
- A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014860 -
- - - UBERON:4300023 ; interolateral plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300023 - -
- Dermal bone that is part of the scapular complex in placoderms.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300023 -
- - - UBERON:0014729 ; striated duct of salivary gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014729 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014729 -
- - - UBERON:0014593 ; tuberomammillary nucleus dorsal part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014593 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014593 -
- UBERON:2001917 ; basibranchial 3 element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001917 @@ -16108,6 +16637,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001312 + + UBERON:0015111 ; distal tarsal bone 4 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015111 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015111 +
+ + + UBERON:1600008 ; pelvic fin distal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600008 + + none
+ "Pelvic fin radial element that develops from the pelvic fin endoskeletal disc. Pelvic fin distal radial elements are paired." []
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600008 +
+ + + UBERON:0014860 ; copepodite stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014860 + +
+ A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014860 +
+ UBERON:2000866 ; epaxial region somite 15 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000866 @@ -16576,18 +17141,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000569 - - UBERON:2201587 ; pectoral fin proximal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201587 - - uberon/phenoscape-anatomy
- pectoral fin proximal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201587 -
- UBERON:0014765 ; crus of diaphragm http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014765 @@ -16600,18 +17153,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014765 - - UBERON:0014759 ; entopallium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014759 - -
- The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014759 -
- UBERON:2000757 ; obsolete fast muscle cell somite 27 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000757 @@ -16624,6 +17165,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000757 + + UBERON:2201587 ; pectoral fin proximal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201587 + + uberon/phenoscape-anatomy
+ pectoral fin proximal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201587 +
+ + + UBERON:0014759 ; entopallium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014759 + +
+ The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014759 +
+ UBERON:4200171 ; process 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200171 @@ -16672,6 +17237,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010796 + + UBERON:0015032 ; pedal digit 2 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015032 + +
+ A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015032 +
+ UBERON:2005214 ; obsolete MeLc http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005214 @@ -16804,18 +17381,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002250 - - UBERON:2001697 ; transverse radial - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001697 - - uberon/phenoscape-anatomy
- Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001697 -
- UBERON:0014624 ; basis modioli http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014624 @@ -16828,6 +17393,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014624 + + UBERON:2001697 ; transverse radial + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001697 + + uberon/phenoscape-anatomy
+ Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001697 +
+ UBERON:2001624 ; type 2 odontode http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001624 @@ -16865,51 +17442,15 @@ - UBERON:0014857 ; zoea stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014857 - -
- A crustacean larval stage characterised by the use of the thoracic appendages for swimming.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014857 -
- - - UBERON:0014838 ; xiphihumeralis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014838 - -
- The most deep of pectoral muscles, found in some mammals
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014838 -
- - - UBERON:0014735 ; paleocortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014735 - -
- Paleocortex is a type of cortical tissue that consists of either four or five cortical laminae (layers of neuronal cell bodies). It has fewer laminae than neocortex, which has six, but more than archicortex, which has three. Paleocortex, along with archicortex and periallocortex, is a type of allocortex. Because the number of laminae that compose a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, paleocortex is thought to be an intermediate between neocortex and archicortex in both aspects.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014735 -
- - - UBERON:0014671 ; distal interphalangeal joint of manural digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014671 + UBERON:3010812 ; Dorsal tail tubercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010812 -
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014671 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010812
@@ -16924,18 +17465,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014603 - - UBERON:3010812 ; Dorsal tail tubercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010812 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010812 -
- UBERON:2000874 ; epaxial region somite 7 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000874 @@ -17032,18 +17561,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000281 - - UBERON:0014629 ; terminal part of the cochlear canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014629 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014629 -
- UBERON:2002092 ; rostral cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002092 @@ -17057,27 +17574,15 @@ - UBERON:2001577 ; premaxilla ascending process - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001577 - - uberon/phenoscape-anatomy
- Process of the premaxilla that extends posteriorly and overlays the mesethmoid.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001577 -
- - - UBERON:3000991 ; dorsal folds - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000991 + UBERON:2000872 ; epaxial region somite 29 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000872 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000991 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000872
@@ -17092,18 +17597,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014391 - - UBERON:2000872 ; epaxial region somite 29 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000872 - - uberon/phenoscape-anatomy
- Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000872 -
- UBERON:4000003 ; permanent cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000003 @@ -17152,6 +17645,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000449 + + UBERON:0015026 ; manual digit 2 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015026 + +
+ A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015026 +
+ UBERON:2001716 ; caudal principal ray 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001716 @@ -17164,6 +17669,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001716 + + UBERON:0014629 ; terminal part of the cochlear canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014629 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014629 +
+ + + UBERON:2001577 ; premaxilla ascending process + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001577 + + uberon/phenoscape-anatomy
+ Process of the premaxilla that extends posteriorly and overlays the mesethmoid.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001577 +
+ + + UBERON:3000991 ; dorsal folds + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000991 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000991 +
+ UBERON:0013752 ; diaphysis of metacarpal bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013752 @@ -17176,6 +17717,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013752 + + UBERON:0014838 ; xiphihumeralis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014838 + +
+ The most deep of pectoral muscles, found in some mammals
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014838 +
+ UBERON:2002224 ; pleuroperitoneal cavity http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002224 @@ -17236,6 +17789,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001897 + + UBERON:0014671 ; distal interphalangeal joint of manural digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014671 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014671 +
+ UBERON:2001076 ; intestinal bulb http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001076 @@ -17368,6 +17933,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000821 + + UBERON:0014857 ; zoea stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014857 + +
+ A crustacean larval stage characterised by the use of the thoracic appendages for swimming.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014857 +
+ + + UBERON:0014735 ; paleocortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014735 + +
+ Paleocortex is a type of cortical tissue that consists of either four or five cortical laminae (layers of neuronal cell bodies). It has fewer laminae than neocortex, which has six, but more than archicortex, which has three. Paleocortex, along with archicortex and periallocortex, is a type of allocortex. Because the number of laminae that compose a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, paleocortex is thought to be an intermediate between neocortex and archicortex in both aspects.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014735 +
+ UBERON:2001660 ; basibranchial tooth http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001660 @@ -17416,42 +18005,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000439 - - UBERON:2102027 ; pectoral fin proximal radial element 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102027 - - none
- Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102027 -
- - - UBERON:0014854 ; anterior leaflet of mitral valve - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014854 - -
- Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014854 -
- - - UBERON:4200186 ; distal keel of metacarpal III - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200186 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200186 -
- UBERON:0014598 ; paraventricular nucleus of the hypothalamus descending division - forniceal part http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014598 @@ -17524,6 +18077,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001247 + + UBERON:0014854 ; anterior leaflet of mitral valve + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014854 + +
+ Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014854 +
+ UBERON:4100015 ; obsolete posterior iliac process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100015 @@ -17584,18 +18149,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000841 - - UBERON:0014670 ; distal interphalangeal joint of manual digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014670 - -
-
-AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014670 -
- UBERON:2000476 ; branchiostegal ray http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000476 @@ -17644,6 +18197,90 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005338 + + UBERON:0015104 ; distal tarsal bone 1 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015104 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015104 +
+ + + UBERON:0015001 ; radius endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015001 + +
+ A radius bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015001 +
+ + + UBERON:0015039 ; pedal digit 3 metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015039 + +
+ A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015039 +
+ + + UBERON:2102027 ; pectoral fin proximal radial element 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102027 + + none
+ Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102027 +
+ + + UBERON:2205383 ; dorsal fin proximal radial cartilage 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205383 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 6 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205383 +
+ + + UBERON:4200186 ; distal keel of metacarpal III + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200186 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200186 +
+ + + UBERON:0014670 ; distal interphalangeal joint of manual digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014670 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014670 +
+ UBERON:2002078 ; hypural plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002078 @@ -17776,6 +18413,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001564 + + UBERON:0014725 ; intercalated duct + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014725 + +
+ A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014725 +
+ UBERON:3010227 ; costal protuberances http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010227 @@ -17824,30 +18473,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013748 - - UBERON:2205383 ; dorsal fin proximal radial cartilage 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205383 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 6 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205383 -
- - - UBERON:0014725 ; intercalated duct - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014725 - -
- A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014725 -
- UBERON:2001333 ; sublingual dorsal and ventral fused http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001333 @@ -17944,18 +18569,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002122 - - UBERON:2101417 ; pelvic fin distal radial element 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101417 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101417 -
- UBERON:2002213 ; obsolete optic nerve head http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002213 @@ -18064,6 +18677,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001181 + + UBERON:2101417 ; pelvic fin distal radial element 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101417 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101417 +
+ UBERON:3000540 ; recessus vaginiformis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000540 @@ -18088,6 +18713,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010783 + + UBERON:2000532 ; lateral division + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000532 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000532 +
+ UBERON:0014488 ; middle phalanx of digit 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014488 @@ -18101,27 +18738,27 @@ - UBERON:2000532 ; lateral division - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000532 + UBERON:2007015 ; posterior presumptive neural plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007015 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000532 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007015
- UBERON:2007015 ; posterior presumptive neural plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007015 + UBERON:4440010 ; pelvic fin radial skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440010 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007015 + Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440010
@@ -18136,18 +18773,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000678 - - UBERON:4440010 ; pelvic fin radial skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440010 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440010 -
- UBERON:2000959 ; sclerotome somite 26 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000959 @@ -18172,30 +18797,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000499 - - UBERON:3010778 ; jugal ramule - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010778 - - uberon/phenoscape-anatomy
- This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010778 -
- - - UBERON:0014875 ; distal epiphysis of distal phalanx of pedal digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014875 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014875 -
- UBERON:0014772 ; lateral palpebral artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014772 @@ -18220,6 +18821,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014663 + + UBERON:3010778 ; jugal ramule + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010778 + + uberon/phenoscape-anatomy
+ This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010778 +
+ UBERON:2001545 ; sublingual ventral cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001545 @@ -18244,6 +18857,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001721 + + UBERON:0014875 ; distal epiphysis of distal phalanx of pedal digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014875 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014875 +
+ UBERON:2000657 ; entopterygoid http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000657 @@ -18617,30 +19242,6 @@ - UBERON:2201818 ; dorsal fin proximal radial cartilage 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201818 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 1 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201818 -
- - - UBERON:0014617 ; ventral nerve root of thoracic spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014617 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014617 -
- - UBERON:2002161 ; ural centrum 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002161 @@ -18868,6 +19469,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000083 + + UBERON:0014617 ; ventral nerve root of thoracic spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014617 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014617 +
+ UBERON:2001913 ; pharyngobranchial 4 element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001913 @@ -18904,6 +19517,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002168 + + UBERON:2201818 ; dorsal fin proximal radial cartilage 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201818 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 1 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201818 +
+ UBERON:2000358 ; granular layer corpus cerebelli http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000358 @@ -18940,6 +19565,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001233 + + UBERON:2100271 ; radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100271 + + none
+ Radial elements are the internal skeletal supports of the median and paired fins.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100271 +
+ UBERON:3010130 ; taenia tecti transversalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010130 @@ -18953,15 +19590,39 @@ - UBERON:2100271 ; radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100271 + UBERON:0015083 ; proximal tarsal bone pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015083 - none
- Radial elements are the internal skeletal supports of the median and paired fins.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100271 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015083 +
+ + + UBERON:4300035 ; supraneural element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300035 + +
+ "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." []
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300035 +
+ + + UBERON:0014560 ; CA3 stratum lucidum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014560 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014560
@@ -19288,18 +19949,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002255 - - UBERON:4300035 ; supraneural element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300035 - -
- "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." []
-AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300035 -
- UBERON:3010285 ; obsolete bottle cell http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010285 @@ -19325,15 +19974,15 @@ - UBERON:0014560 ; CA3 stratum lucidum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014560 + UBERON:0013761 ; cervical cavity + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013761
-
-AmiGO | QuickGO

]]> + The cavity formed by the walls of the cervix.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014560 + Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013761
@@ -19348,18 +19997,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001908 - - UBERON:0013761 ; cervical cavity - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013761 - -
- The cavity formed by the walls of the cervix.
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013761 -
- UBERON:3010431 ; archenteron floor http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010431 @@ -19384,6 +20021,66 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000712 + + UBERON:0015091 ; distal carpal bone 3 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015091 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015091 +
+ + + UBERON:2105384 ; dorsal fin proximal radial element 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105384 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105384 +
+ + + UBERON:0014892 ; skeletal muscle organ + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014892 + +
+ A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles).
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014892 +
+ + + UBERON:0014482 ; ischial callosity + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014482 + +
+ An area of hardened, leathery skin on either side of the base of the tail on the rump.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014482 +
+ + + UBERON:0014567 ; layer of hippocampal field + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014567 + +
+ A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1).
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014567 +
+ UBERON:3000065 ; obsolete forelimb opening http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000065 @@ -19432,18 +20129,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014410 - - UBERON:0014482 ; ischial callosity - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014482 - -
- An area of hardened, leathery skin on either side of the base of the tail on the rump.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014482 -
- UBERON:4200038 ; subscapular fossa http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200038 @@ -19936,18 +20621,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001371 - - UBERON:2105384 ; dorsal fin proximal radial element 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105384 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105384 -
- UBERON:3010128 ; taeniae tecti marginalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010128 @@ -19960,30 +20633,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010128 - - UBERON:0014892 ; skeletal muscle organ - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014892 - -
- A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles).
-AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014892 -
- - - UBERON:0014567 ; layer of hippocampal field - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014567 - -
- A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1).
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014567 -
- UBERON:3000433 ; pineal foramen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000433 @@ -20057,39 +20706,27 @@ - UBERON:2202280 ; pectoral fin distal radial cartilage 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202280 + UBERON:2005268 ; preopercle horizontal limb-symplectic joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005268 uberon/phenoscape-anatomy
- pectoral fin distal radial 3 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> + Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202280 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005268
- UBERON:0014679 ; distal interphalangeal joint of digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014679 + UBERON:0014934 ; cerebral cortex mantle layer + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014934

-AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014679 -
- - - UBERON:2005268 ; preopercle horizontal limb-symplectic joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005268 - - uberon/phenoscape-anatomy
- Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic.
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005268 + Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014934
@@ -20129,27 +20766,51 @@ - UBERON:2201819 ; dorsal fin proximal radial cartilage 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201819 + UBERON:2202280 ; pectoral fin distal radial cartilage 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202280 uberon/phenoscape-anatomy
- dorsal fin proximal radial 2 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> + pectoral fin distal radial 3 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201819 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202280
- UBERON:3010118 ; quadrato-orbital commissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010118 + UBERON:0014679 ; distal interphalangeal joint of digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014679 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014679 +
+ + + UBERON:0015008 ; thoracic vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015008 + +
+ A thoracic vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015008 +
+ + + UBERON:2201819 ; dorsal fin proximal radial cartilage 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201819 uberon/phenoscape-anatomy
- Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate.
-AmiGO | QuickGO

]]> + dorsal fin proximal radial 2 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010118 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201819
@@ -20176,6 +20837,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014643 + + UBERON:3010118 ; quadrato-orbital commissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010118 + + uberon/phenoscape-anatomy
+ Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010118 +
+ UBERON:2000371 ; internal pharyngoclavicularis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000371 @@ -20248,18 +20921,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3001008 - - UBERON:0014836 ; levator arcuum muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014836 - -
-
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014836 -
- UBERON:2001864 ; basibranchial 1 cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001864 @@ -20272,6 +20933,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001864 + + UBERON:0015079 ; proximal carpal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015079 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015079 +
+ UBERON:2000957 ; hypaxial region somite 19 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000957 @@ -20308,6 +20981,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000298 + + UBERON:0014836 ; levator arcuum muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014836 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014836 +
+ UBERON:2000895 ; hypaxial region somite 18 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000895 @@ -20560,30 +21245,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000276 - - UBERON:4300030 ; flexor caudalis muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300030 - -
-
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300030 -
- - - UBERON:0014616 ; dorsal nerve root of thoracic spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014616 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014616 -
- UBERON:2001945 ; mesethmoid-premaxillary ligament http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001945 @@ -20597,39 +21258,39 @@ - UBERON:2001843 ; ceratohyal-dorsal hypohyal joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001843 + UBERON:0013755 ; arterial blood + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013755 - uberon/phenoscape-anatomy
- Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001843 + Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013755
- UBERON:2001418 ; obsolete dorsal fin lepidotrichium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001418 + UBERON:0015030 ; pedal digit phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015030 - uberon/phenoscape-anatomy
- Lepidotrichium which is part of the dorsal fin.
-AmiGO | QuickGO

]]> +
+ A pedal digit phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001418 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015030
- UBERON:0013755 ; arterial blood - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013755 + UBERON:0014616 ; dorsal nerve root of thoracic spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014616

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013755 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014616
@@ -20681,18 +21342,42 @@ - UBERON:2105375 ; dorsal fin distal radial element 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105375 + UBERON:2001843 ; ceratohyal-dorsal hypohyal joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001843 - none
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105375 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001843
+ UBERON:2001418 ; obsolete dorsal fin lepidotrichium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001418 + + uberon/phenoscape-anatomy
+ Lepidotrichium which is part of the dorsal fin.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001418 +
+ + + UBERON:4300030 ; flexor caudalis muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300030 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300030 +
+ + UBERON:2001343 ; telencephalon diencephalon boundary http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001343 @@ -20704,6 +21389,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001343 + + UBERON:0015092 ; distal carpal bone 3 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015092 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015092 +
+ + + UBERON:2105375 ; dorsal fin distal radial element 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105375 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105375 +
+ + + UBERON:0014480 ; blood feather + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014480 + +
+ A developing feather
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014480 +
+ UBERON:2000171 ; interhyal bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000171 @@ -20764,18 +21485,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000887 - - UBERON:3000539 ; recessus marsupiatus of premaxilla - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000539 - - uberon/phenoscape-anatomy
- "Is a recess on the surface of the premaxilla near to the base of the pars facialis." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000539 -
- UBERON:0014705 ; median lingual swelling epithelium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014705 @@ -20789,27 +21498,27 @@ - UBERON:3010156 ; middle cavity - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010156 + UBERON:3000539 ; recessus marsupiatus of premaxilla + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000539 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + "Is a recess on the surface of the premaxilla near to the base of the pars facialis." []
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010156 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000539
- UBERON:2205225 ; median fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205225 + UBERON:3010156 ; middle cavity + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010156 uberon/phenoscape-anatomy
- median fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205225 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010156
@@ -20848,6 +21557,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001502 + + UBERON:2205225 ; median fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205225 + + uberon/phenoscape-anatomy
+ median fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205225 +
+ UBERON:2000294 ; torus lateralis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000294 @@ -20896,18 +21617,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002084 - - UBERON:4200158 ; metatarsal bone of digit 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200158 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200158 -
- UBERON:3000796 ; imbricate neural arch http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000796 @@ -20920,18 +21629,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000796 - - UBERON:2205384 ; dorsal fin proximal radial cartilage 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205384 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 7 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205384 -
- UBERON:0014886 ; distal epiphysis of distal phalanx of manual digit http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014886 @@ -20944,6 +21641,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014886 + + UBERON:4200158 ; metatarsal bone of digit 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200158 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200158 +
+ UBERON:2001474 ; sublingual dorsal and ventral separate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001474 @@ -20993,15 +21702,15 @@ - UBERON:2101415 ; pelvic fin distal radial element 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101415 + UBERON:2205384 ; dorsal fin proximal radial cartilage 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205384 - none
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 7 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101415 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205384
@@ -21016,6 +21725,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000868 + + UBERON:2101415 ; pelvic fin distal radial element 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101415 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101415 +
+ UBERON:2001532 ; sublingual dorsal cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001532 @@ -21040,18 +21761,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000712 - - UBERON:0014704 ; pleuroperitoneal canal lumen - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014704 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014704 -
- UBERON:3000260 ; lamina nariochoanalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000260 @@ -21064,6 +21773,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000260 + + UBERON:0014704 ; pleuroperitoneal canal lumen + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014704 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014704 +
+ UBERON:3000193 ; foramen perilymphaticum accessorium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000193 @@ -21124,6 +21845,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002044 + + UBERON:2105381 ; dorsal fin proximal radial element 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105381 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105381 +
+ UBERON:3010781 ; pars convoluta http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010781 @@ -21161,75 +21894,27 @@ - UBERON:0014931 ; periungual skin - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014931 - -
- A zone of skin adjacent to a nail.
-AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014931 -
- - - UBERON:0014915 ; genu of facial nerve - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014915 - -
- the bend in the facial nerve at the lateral end of the internal acoustic meatus.
-AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014915 -
- - - UBERON:2105381 ; dorsal fin proximal radial element 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105381 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105381 -
- - - UBERON:0014858 ; post-larval stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014858 - -
- A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014858 -
- - - UBERON:4200160 ; mesomere (fin) - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200160 + UBERON:3010060 ; centrale (fore) + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010060 -
- "The median series of bones supporting the pectoral fin of sarcopterygian fish. See Dipnomorpha. In the pectoral fin, the first mesomere is the humerus, the second the ulna, and the third probably the intermedium. The radius is the first preaxial radial. All other homologies are suspect. from http://palaeos.com/vertebrates/glossary" []
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Rectangular cartilage or bone between the distal basal commune and the proximal intermedium.
+AmiGO | QuickGO

]]>
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200160 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010060
- UBERON:4200175 ; supraglenoid region - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200175 + UBERON:3010613 ; laryngo-tracheal chamber + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010613 -
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid.
+AmiGO | QuickGO

]]>
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200175 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010613
@@ -21256,30 +21941,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014636 - - UBERON:3010060 ; centrale (fore) - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010060 - - uberon/phenoscape-anatomy
- Rectangular cartilage or bone between the distal basal commune and the proximal intermedium.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010060 -
- - - UBERON:3010613 ; laryngo-tracheal chamber - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010613 - - uberon/phenoscape-anatomy
- Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010613 -
- UBERON:3010705 ; obsolete lateral line receptor http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010705 @@ -21316,18 +21977,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000849 - - UBERON:0014480 ; blood feather - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014480 - -
- A developing feather
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014480 -
- UBERON:2000139 ; immature otolith http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000139 @@ -21653,15 +22302,15 @@ - UBERON:0014644 ; cerebrocerebellum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014644 + UBERON:0015107 ; distal tarsal bone 2 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015107
- A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres).
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014644 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015107
@@ -21676,6 +22325,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014280 + + UBERON:0014644 ; cerebrocerebellum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014644 + +
+ A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres).
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014644 +
+ UBERON:2002279 ; pectoral fin distal radial 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002279 @@ -21701,39 +22362,39 @@ - UBERON:2200508 ; obsolete pelvic fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200508 + UBERON:2001717 ; caudal principal ray 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001717 uberon/phenoscape-anatomy
- pelvic fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> + Caudal principal ray that is ventrally adjacent to caudal principal ray 4.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200508 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001717
- UBERON:0014896 ; transversely striated somatic muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014896 + UBERON:0015028 ; manual digit 4 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015028
- A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures.
-AmiGO | QuickGO

]]> + A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014896 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015028
- UBERON:2001717 ; caudal principal ray 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001717 + UBERON:2200508 ; obsolete pelvic fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200508 uberon/phenoscape-anatomy
- Caudal principal ray that is ventrally adjacent to caudal principal ray 4.
-AmiGO | QuickGO

]]> + pelvic fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001717 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200508
@@ -21748,6 +22409,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000333 + + UBERON:0014896 ; transversely striated somatic muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014896 + +
+ A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures.
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014896 +
+ UBERON:3000454 ; postnasal wall http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000454 @@ -21820,6 +22493,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000636 + + UBERON:0015110 ; distal tarsal bone 3 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015110 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015110 +
+ UBERON:2005122 ; dorsal axial hypoblast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005122 @@ -21928,18 +22613,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005200 - - UBERON:3010671 ; ramule palatonasalis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010671 - - uberon/phenoscape-anatomy
- Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010671 -
- UBERON:4200183 ; bicipital tuberosity http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200183 @@ -21953,15 +22626,15 @@ - UBERON:2000939 ; middle lateral line neuromast - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000939 + UBERON:3010671 ; ramule palatonasalis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010671 -
- Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve.
+AmiGO | QuickGO

]]>
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000939 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010671
@@ -22012,18 +22685,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000960 - - UBERON:0014633 ; substantia gelatinosa of lumbar spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014633 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014633 -
- UBERON:3000907 ; eminentia arcuata http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000907 @@ -22084,6 +22745,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001848 + + UBERON:2000939 ; middle lateral line neuromast + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000939 + +
+ Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000939 +
+ UBERON:4200028 ; adductor blade http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200028 @@ -22108,6 +22781,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000840 + + UBERON:0014633 ; substantia gelatinosa of lumbar spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014633 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014633 +
+ UBERON:2001246 ; epibranchial 2 bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001246 @@ -22216,6 +22901,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010194 + + UBERON:0015094 ; distal carpal bone 4 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015094 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015094 +
+ + + UBERON:4200160 ; mesomere (fin) + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200160 + +
+ "The median series of bones supporting the pectoral fin of sarcopterygian fish. See Dipnomorpha. In the pectoral fin, the first mesomere is the humerus, the second the ulna, and the third probably the intermedium. The radius is the first preaxial radial. All other homologies are suspect. from http://palaeos.com/vertebrates/glossary" []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200160 +
+ + + UBERON:0014639 ; frontal sulcus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014639 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014639 +
+ + + UBERON:0014664 ; nucleus recessus posterioris + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014664 + +
+ The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014664 +
+ UBERON:2002203 ; obsolete immature Schwann cell http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002203 @@ -22252,30 +22985,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000934 - - UBERON:0014639 ; frontal sulcus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014639 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014639 -
- - - UBERON:0014664 ; nucleus recessus posterioris - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014664 - -
- The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014664 -
- UBERON:2001008 ; obsolete muscle pioneer somite 27 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001008 @@ -22300,6 +23009,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000972 + + UBERON:0014505 ; proximal phalanx of digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014505 + +
+ A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014505 +
+ UBERON:1500005 ; ischial cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500005 @@ -22336,18 +23057,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000492 - - UBERON:0014505 ; proximal phalanx of digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014505 - -
- A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014505 -
- UBERON:3010734 ; M. flexor carpi ulnaris http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010734 @@ -22552,6 +23261,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005373 + + UBERON:4200175 ; supraglenoid region + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200175 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200175 +
+ UBERON:2005217 ; obsolete CaV http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005217 @@ -22612,6 +23333,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000715 + + UBERON:0015055 ; pubic endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015055 + +
+ A pubic bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015055 +
+ + + UBERON:0014858 ; post-larval stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014858 + +
+ A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014858 +
+ UBERON:3000898 ; trochanteric crest http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000898 @@ -22708,6 +23453,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000516 + + UBERON:0015088 ; distal carpal bone 2 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015088 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015088 +
+ + + UBERON:0014915 ; genu of facial nerve + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014915 + +
+ the bend in the facial nerve at the lateral end of the internal acoustic meatus.
+AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014915 +
+ + + UBERON:0014683 ; parasymphisial tooth whorl + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014683 + +
+ A tooth whorl located at or near the mandibular symphysis.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014683 +
+ UBERON:2000551 ; nucleus lateralis valvulae http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000551 @@ -22733,39 +23514,63 @@ - UBERON:0014863 ; veliger stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014863 + UBERON:0014450 ; pretectal nucleus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014450
- The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development
-AmiGO | QuickGO

]]> + any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex
+AmiGO | QuickGO

]]>
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014863 + Mon, 27 May 2013 22:03:39 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014450
- UBERON:0014683 ; parasymphisial tooth whorl - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014683 + UBERON:2001831 ; pterosphenoid-orbitosphenoid joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001831 + + uberon/phenoscape-anatomy
+ Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001831 +
+ + + UBERON:3000057 ; canalis semicircularis anterior + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000057 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000057 +
+ + + UBERON:4200018 ; calcaneal tuber + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200018
- A tooth whorl located at or near the mandibular symphysis.
-AmiGO | QuickGO

]]> + "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." []
+AmiGO | QuickGO

]]>
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014683 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200018
- UBERON:2001831 ; pterosphenoid-orbitosphenoid joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001831 + UBERON:2001001 ; epaxial region somite 13 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001001 uberon/phenoscape-anatomy
- Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired.
-AmiGO | QuickGO

]]> + Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001831 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001001
@@ -22781,6 +23586,18 @@ + UBERON:0014394 ; uterine fat pad + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014394 + +
+ Encapsulated adipose tissue associated with the uterus
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014394 +
+ + UBERON:3010516 ; cutaneus magnus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010516 @@ -23069,66 +23886,6 @@ - UBERON:0014450 ; pretectal nucleus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014450 - -
- any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex
-AmiGO | QuickGO

]]> -
- Mon, 27 May 2013 22:03:39 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014450 -
- - - UBERON:3000057 ; canalis semicircularis anterior - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000057 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000057 -
- - - UBERON:4200018 ; calcaneal tuber - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200018 - -
- "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200018 -
- - - UBERON:2001001 ; epaxial region somite 13 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001001 - - uberon/phenoscape-anatomy
- Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001001 -
- - - UBERON:0014394 ; uterine fat pad - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014394 - -
- Encapsulated adipose tissue associated with the uterus
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014394 -
- - UBERON:0014606 ; infundibular stem http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014606 @@ -23200,6 +23957,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010209 + + UBERON:0015098 ; distal carpal bone 5 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015098 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015098 +
+ + + UBERON:0014863 ; veliger stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014863 + +
+ The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014863 +
+ UBERON:2005240 ; obsolete Kolmer-Agduhr neuron http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005240 @@ -23308,18 +24089,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000647 - - UBERON:0014835 ; serratus muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014835 - -
-
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014835 -
- UBERON:2001407 ; infraorbital 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001407 @@ -23332,6 +24101,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001407 + + UBERON:0014835 ; serratus muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014835 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014835 +
+ UBERON:2001923 ; aortic canal http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001923 @@ -23356,18 +24137,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002007 - - UBERON:0014674 ; distal interphalangeal joint of pedal digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014674 - -
-
-AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014674 -
- UBERON:4200039 ; supraacetabular buttress http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200039 @@ -23404,6 +24173,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002115 + + UBERON:0014674 ; distal interphalangeal joint of pedal digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014674 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014674 +
+ UBERON:3010631 ; obsolete Stiftchenzellen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010631 @@ -23440,6 +24221,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007030 + + UBERON:0015100 ; distal tarsal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015100 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015100 +
+ UBERON:3010576 ; prenasal http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010576 @@ -23500,6 +24293,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001779 + + UBERON:0015040 ; pedal digit 4 metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015040 + +
+ A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015040 +
+ UBERON:3010797 ; m. ypsiloideus posterior http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010797 @@ -23560,6 +24365,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010423 + + UBERON:0014931 ; periungual skin + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014931 + +
+ A zone of skin adjacent to a nail.
+AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014931 +
+ UBERON:3010398 ; follicle layer http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010398 @@ -23657,15 +24474,15 @@ - UBERON:4200025 ; ascending process of the astragalus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200025 + UBERON:0014379 ; adductor hallucis muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014379
- "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly. [NI]" []
-AmiGO | QuickGO

]]> + The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200025 + Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014379
@@ -23680,18 +24497,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000095 - - UBERON:0014379 ; adductor hallucis muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014379 - -
- The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable.
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014379 -
- UBERON:0014374 ; embryoid body http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014374 @@ -23705,15 +24510,15 @@ - UBERON:2105374 ; dorsal fin distal radial element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105374 + UBERON:0015025 ; manual digit 1 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015025 - none
-
-AmiGO | QuickGO

]]> +
+ A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105374 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015025
@@ -23728,6 +24533,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014590 + + UBERON:4200025 ; ascending process of the astragalus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200025 + +
+ "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly. [NI]" []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200025 +
+ UBERON:2000136 ; otic lateral line neuromast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000136 @@ -23741,27 +24558,27 @@ - UBERON:2005074 ; central cardiac conduction system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005074 + UBERON:3000562 ; septum semircularium posterior + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000562 uberon/phenoscape-anatomy
- Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods.
-AmiGO | QuickGO

]]> + "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." []
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005074 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000562
- UBERON:3000562 ; septum semircularium posterior - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000562 + UBERON:2005074 ; central cardiac conduction system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005074 uberon/phenoscape-anatomy
- "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." []
-AmiGO | QuickGO

]]> + Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000562 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005074
@@ -23812,6 +24629,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002016 + + UBERON:2105374 ; dorsal fin distal radial element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105374 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105374 +
+ UBERON:3000776 ; glenoid foramen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000776 @@ -23825,15 +24654,15 @@ - UBERON:2001706 ; infraorbital 11 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001706 + UBERON:0015003 ; ulna endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015003 - uberon/phenoscape-anatomy
- Infraorbital that is the eleventh bone of the infraorbital series.
-AmiGO | QuickGO

]]> +
+ A ulna bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001706 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015003
@@ -23849,15 +24678,15 @@ - UBERON:2001235 ; hypobranchial 3 bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001235 + UBERON:2001706 ; infraorbital 11 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001706 uberon/phenoscape-anatomy
- Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage.
-AmiGO | QuickGO

]]> + Infraorbital that is the eleventh bone of the infraorbital series.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001235 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001706
@@ -23873,15 +24702,15 @@ - UBERON:4200168 ; obsolete neck of ilium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200168 + UBERON:2001235 ; hypobranchial 3 bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001235 -
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage.
+AmiGO | QuickGO

]]>
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200168 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001235
@@ -23896,6 +24725,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005191 + + UBERON:2001991 ; lateral bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001991 + + uberon/phenoscape-anatomy
+ Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001991 +
+ UBERON:4000024 ; obsolete intercalar http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000024 @@ -23909,15 +24750,15 @@ - UBERON:2001991 ; lateral bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001991 + UBERON:0015045 ; manual digit 3 metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015045 - uberon/phenoscape-anatomy
- Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired.
-AmiGO | QuickGO

]]> +
+ A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001991 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015045
@@ -23933,15 +24774,15 @@ - UBERON:3000992 ; obsolete principal cavity - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000992 + UBERON:2001759 ; dorsal fin lepidotrichium 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001759 uberon/phenoscape-anatomy
- The largest part of the nasal cavity, containing the olfactory epithelium.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000992 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001759
@@ -23957,15 +24798,15 @@ - UBERON:2001759 ; dorsal fin lepidotrichium 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001759 + UBERON:3000992 ; obsolete principal cavity + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000992 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + The largest part of the nasal cavity, containing the olfactory epithelium.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001759 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000992
@@ -24004,6 +24845,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000166 + + UBERON:0015109 ; distal tarsal bone 3 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015109 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015109 +
+ UBERON:2002166 ; pseudourostyle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002166 @@ -24017,27 +24870,27 @@ - UBERON:2001707 ; infraorbital 12 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001707 + UBERON:3000464 ; obsolete premaxillary tooth + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000464 uberon/phenoscape-anatomy
- Infraorbital that is the twelfth bone of the infraorbital series.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001707 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000464
- UBERON:3000464 ; obsolete premaxillary tooth - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000464 + UBERON:2001707 ; infraorbital 12 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001707 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Infraorbital that is the twelfth bone of the infraorbital series.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000464 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001707
@@ -24064,6 +24917,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005227 + + UBERON:2001903 ; ceratobranchial 5 element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001903 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001903 +
+ UBERON:3010007 ; pit organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010007 @@ -24077,39 +24942,39 @@ - UBERON:2001903 ; ceratobranchial 5 element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001903 + UBERON:3010179 ; web glands + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010179 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001903 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010179
- UBERON:3010179 ; web glands - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010179 + UBERON:2002269 ; interarcual cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002269 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010179 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002269
- UBERON:4000010 ; obsolete notochordal mesodermal cell - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000010 + UBERON:2000335 ; crossed tecto-bulbar tract + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000335 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000010 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000335
@@ -24125,27 +24990,27 @@ - UBERON:2000335 ; crossed tecto-bulbar tract - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000335 + UBERON:0015102 ; distal tarsal bone 1 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015102 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000335 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015102
- UBERON:2002269 ; interarcual cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002269 + UBERON:4000010 ; obsolete notochordal mesodermal cell + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000010 uberon/phenoscape-anatomy
- Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002269 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000010
@@ -24160,18 +25025,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010496 - - UBERON:4100005 ; second phalanx - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100005 - -
- "Second most proximal phalanx in manual or pedal digits." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100005 -
- UBERON:2000837 ; sclerotome somite 6 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000837 @@ -24184,6 +25037,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000837 + + UBERON:4100005 ; second phalanx + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100005 + +
+ "Second most proximal phalanx in manual or pedal digits." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100005 +
+ UBERON:3000155 ; extremitas anterior http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000155 @@ -24196,6 +25061,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000155 + + UBERON:4200168 ; obsolete neck of ilium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200168 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200168 +
+ UBERON:3010586 ; vasa efferentia http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010586 @@ -24209,30 +25086,6 @@ - UBERON:2100947 ; dorsal fin proximal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100947 - - none
- Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100947 -
- - - UBERON:4200178 ; proximal mesomere - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200178 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200178 -
- - UBERON:0014532 ; lamina of cerebral hemisphere http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014532 @@ -24281,30 +25134,18 @@ - UBERON:2001462 ; somite border - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001462 + UBERON:4200178 ; proximal mesomere + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200178 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001462 -
- - - UBERON:2001987 ; centrum 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001987 - - uberon/phenoscape-anatomy
- Centrum that is part of vertebra 5.
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001987 + Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200178
- + UBERON:0014509 ; distal sesamoid impar ligament http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014509 @@ -24328,6 +25169,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002283 + + UBERON:2001987 ; centrum 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001987 + + uberon/phenoscape-anatomy
+ Centrum that is part of vertebra 5.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001987 +
+ + + UBERON:2001462 ; somite border + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001462 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001462 +
+ UBERON:4400007 ; camptotrichium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4400007 @@ -24353,27 +25218,27 @@ - UBERON:3010638 ; obsolete ciliary cell - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010638 + UBERON:2000778 ; obsolete interneuron spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000778 uberon/phenoscape-anatomy
- A type of cell that develops in embryos and functions in embryonic movements.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010638 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000778
- UBERON:2000778 ; obsolete interneuron spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000778 + UBERON:3010638 ; obsolete ciliary cell + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010638 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + A type of cell that develops in embryos and functions in embryonic movements.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000778 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010638
@@ -24401,27 +25266,27 @@ - UBERON:4000005 ; obsolete basihyal element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000005 + UBERON:2005344 ; preopticohypothalamic tract + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005344 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000005 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005344
- UBERON:2005344 ; preopticohypothalamic tract - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005344 + UBERON:4000005 ; obsolete basihyal element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000005 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005344 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000005
@@ -24485,15 +25350,15 @@ - UBERON:3010685 ; distal-most prehallical element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010685 + UBERON:4200156 ; metapodium bone 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200156 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010685 + Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200156
@@ -24508,6 +25373,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000240 + + UBERON:3010685 ; distal-most prehallical element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010685 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010685 +
+ UBERON:3000786 ; fossa cubitalis ventralis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000786 @@ -24556,18 +25433,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014386 - - UBERON:4200156 ; metapodium bone 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200156 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200156 -
- UBERON:2000498 ; dilator operculi http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000498 @@ -24844,6 +25709,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010392 + + UBERON:0015114 ; distal tarsal bone 5 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015114 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015114 +
+ UBERON:4440011 ; paired fin lepidothrichium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440011 @@ -24868,18 +25745,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000814 - - UBERON:3000597 ; symphysis maxillaris - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000597 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000597 -
- UBERON:0013770 ; intermammary cleft http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013770 @@ -24893,15 +25758,27 @@ - UBERON:0014786 ; extraembryonic portion of umbilical vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014786 + UBERON:0014665 ; nucleus preopticus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014665
- Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta.
-AmiGO | QuickGO

]]> + The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals.
+AmiGO | QuickGO

]]>
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014786 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014665 +
+ + + UBERON:3000597 ; symphysis maxillaris + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000597 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000597
@@ -24917,39 +25794,27 @@ - UBERON:0014698 ; lacrimal caruncle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014698 + UBERON:0014611 ; apex of thoracic spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014611

-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014698 -
- - - UBERON:0014665 ; nucleus preopticus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014665 - -
- The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals.
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014665 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014611
- UBERON:0014611 ; apex of thoracic spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014611 + UBERON:0014710 ; carapacial ridge + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014710
-
-AmiGO | QuickGO

]]> + A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014611 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014710
@@ -24964,18 +25829,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010204 - - UBERON:0014710 ; carapacial ridge - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014710 - -
- A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014710 -
- UBERON:2001910 ; pharyngobranchial 1 element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001910 @@ -25000,6 +25853,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002261 + + UBERON:0014786 ; extraembryonic portion of umbilical vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014786 + +
+ Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta.
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014786 +
+ + + UBERON:0014698 ; lacrimal caruncle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014698 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014698 +
+ + + UBERON:0014531 ; lamina of diencephalon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014531 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014531 +
+ UBERON:2002118 ; scale radius http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002118 @@ -25036,18 +25925,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000309 - - UBERON:0014531 ; lamina of diencephalon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014531 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014531 -
- UBERON:3010747 ; submentalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010747 @@ -25120,6 +25997,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000915 + + UBERON:0014940 ; cerebral cortex subventricular zone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014940 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014940 +
+ + + UBERON:2100947 ; dorsal fin proximal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100947 + + none
+ Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100947 +
+ UBERON:3010502 ; duodeno-hepatic artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010502 @@ -25241,15 +26142,15 @@ - UBERON:0014709 ; carapace primordium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014709 + UBERON:0013760 ; external cervical os + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013760
- A primordium that gives rise to a carapace.
-AmiGO | QuickGO

]]> + Opening of uterine cervix into the vagina.
+AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014709 + Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013760
@@ -25264,30 +26165,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010032 - - UBERON:0014442 ; superior ischial ramus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014442 - -
- The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014442 -
- - - UBERON:0013760 ; external cervical os - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013760 - -
- Opening of uterine cervix into the vagina.
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013760 -
- UBERON:2002070 ; internal anterior process of basipterygium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002070 @@ -25384,6 +26261,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001832 + + UBERON:0015113 ; distal tarsal bone 4 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015113 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015113 +
+ + + UBERON:0015050 ; tarsus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015050 + +
+ A tarsus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015050 +
+ + + UBERON:0014508 ; distal interphalangeal joint of manual digit 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014508 + +
+ A distal inter-phalangeal joint that is part of the 3rd manual digit.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014508 +
+ UBERON:2002206 ; macula communis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002206 @@ -25492,6 +26405,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000087 + + UBERON:0014709 ; carapace primordium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014709 + +
+ A primordium that gives rise to a carapace.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014709 +
+ + + UBERON:0014442 ; superior ischial ramus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014442 + +
+ The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014442 +
+ UBERON:3010501 ; duodeno-pancreatic artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010501 @@ -25516,18 +26453,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000462 - - UBERON:0013745 ; zona intermedia of adrenal gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013745 - -
- A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata.
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013745 -
- UBERON:2001578 ; anterior dorsomedial process of autopalatine http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001578 @@ -25540,6 +26465,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001578 + + UBERON:0013745 ; zona intermedia of adrenal gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013745 + +
+ A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata.
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013745 +
+ UBERON:3000348 ; os basale http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000348 @@ -25552,18 +26489,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000348 - - UBERON:0014508 ; distal interphalangeal joint of manual digit 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014508 - -
- A distal inter-phalangeal joint that is part of the 3rd manual digit.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014508 -
- UBERON:2001986 ; centrum 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001986 @@ -25624,6 +26549,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010829 + + UBERON:0015097 ; distal carpal bone 5 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015097 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015097 +
+ UBERON:2001571 ; postovulatory follicle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001571 @@ -25720,18 +26657,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000103 - - UBERON:3000827 ; margo anterior of cleithrum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000827 - - uberon/phenoscape-anatomy
- Anterior margin of the anterior ramus of the cleithrum.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000827 -
- UBERON:0014411 ; greater sciatic notch http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014411 @@ -25744,6 +26669,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014411 + + UBERON:3000827 ; margo anterior of cleithrum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000827 + + uberon/phenoscape-anatomy
+ Anterior margin of the anterior ramus of the cleithrum.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000827 +
+ UBERON:2000487 ; central zone of D http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000487 @@ -25792,42 +26729,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010298 - - UBERON:2200268 ; anal fin proximal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200268 - - uberon/phenoscape-anatomy
- anal fin proximal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200268 -
- - - UBERON:0014847 ; vastus intermedius - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014847 - -
- The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014847 -
- - - UBERON:0014483 ; distal phalanx of digit 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014483 - -
- A distal phalanx that is part of a digit 1 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014483 -
- UBERON:3010277 ; obsolete tip http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010277 @@ -25864,6 +26765,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000038 + + UBERON:0014847 ; vastus intermedius + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014847 + +
+ The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014847 +
+ UBERON:2005235 ; obsoelte UCoD http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005235 @@ -25876,6 +26789,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005235 + + UBERON:0014483 ; distal phalanx of digit 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014483 + +
+ A distal phalanx that is part of a digit 1 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014483 +
+ UBERON:2000564 ; pelvic abductor profundus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000564 @@ -25961,15 +26886,63 @@ - UBERON:2005267 ; erector muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005267 + UBERON:0015038 ; pedal digit 2 metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015038 + +
+ A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015038 +
+ + + UBERON:0014935 ; cerebral cortex marginal layer + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014935 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014935 +
+ + + UBERON:2200268 ; anal fin proximal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200268 uberon/phenoscape-anatomy
- Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle.
-AmiGO | QuickGO

]]> + anal fin proximal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005267 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200268 +
+ + + UBERON:0014708 ; costal plate of carapace + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014708 + +
+ One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014708 +
+ + + UBERON:0014689 ; middle temporal sulcus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014689 + +
+ A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014689
@@ -25984,6 +26957,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014675 + + UBERON:0014599 ; paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014599 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014599 +
+ + + UBERON:2005267 ; erector muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005267 + + uberon/phenoscape-anatomy
+ Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005267 +
+ UBERON:2001710 ; opercle-interopercle joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001710 @@ -26032,18 +27029,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000422 - - UBERON:2000502 ; dorsal motor nucleus trigeminal nerve - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000502 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000502 -
- UBERON:0014612 ; substantia gelatinosa of thoracic spinal cord dorsal horn http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014612 @@ -26056,6 +27041,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014612 + + UBERON:2000502 ; dorsal motor nucleus trigeminal nerve + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000502 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000502 +
+ UBERON:3010100 ; mental glands http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010100 @@ -26224,18 +27221,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000929 - - UBERON:0014599 ; paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014599 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014599 -
- UBERON:2005207 ; obsolete RoM3l http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005207 @@ -26272,18 +27257,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000685 - - UBERON:0014689 ; middle temporal sulcus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014689 - -
- A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus.
-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014689 -
- UBERON:3000132 ; obsolete dorsal plate http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000132 @@ -26368,6 +27341,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010736 + + UBERON:0014609 ; thoracic spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014609 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014609 +
+ UBERON:2000852 ; somite 15 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000852 @@ -26392,66 +27377,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000068 - - UBERON:0014801 ; nuchal line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014801 - -
- The nuchal lines are four curved lines on the external surface of the occipital bone: The upper, often faintly marked, is named the highest nuchal line, and to it the galea aponeurotica is attached. Below the highest nuchal line is the superior nuchal line. To it is attached the Sternocleidomastoid muscle, Occipitalis muscle, and Splenius capitis muscle, and the trapezius muscle. From the external occipital protuberance a ridge or crest, the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchC&. Running from the middle of this line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014801 -
- - - UBERON:4200161 ; mesomere 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200161 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200161 -
- - - UBERON:0014708 ; costal plate of carapace - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014708 - -
- One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014708 -
- - - UBERON:0014740 ; dorsal pallium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014740 - -
- Subdivision of pallium that is located dorsally.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014740 -
- - - UBERON:0014609 ; thoracic spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014609 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014609 -
- UBERON:3000757 ; zonal area http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000757 @@ -26512,6 +27437,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005099 + + UBERON:0015059 ; orbitosphenoid endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015059 + +
+ A orbitosphenoid bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015059 +
+ + + UBERON:0014740 ; dorsal pallium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014740 + +
+ Subdivision of pallium that is located dorsally.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014740 +
+ UBERON:2000993 ; lateral wall neural rod http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000993 @@ -26752,6 +27701,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000443 + + UBERON:0015006 ; coccygeal vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015006 + +
+ A coccygeal vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015006 +
+ + + UBERON:0014801 ; nuchal line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014801 + +
+ The nuchal lines are four curved lines on the external surface of the occipital bone: The upper, often faintly marked, is named the highest nuchal line, and to it the galea aponeurotica is attached. Below the highest nuchal line is the superior nuchal line. To it is attached the Sternocleidomastoid muscle, Occipitalis muscle, and Splenius capitis muscle, and the trapezius muscle. From the external occipital protuberance a ridge or crest, the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchC&. Running from the middle of this line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014801 +
+ + + UBERON:4200161 ; mesomere 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200161 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200161 +
+ UBERON:3010200 ; cutaneous vasculature http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010200 @@ -26932,30 +27917,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100000 - - UBERON:2001879 ; rib of vertebra 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001879 - - uberon/phenoscape-anatomy
- Rib that articulates with the parapophysis of the first centrum.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001879 -
- - - UBERON:0014720 ; interlobar duct - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014720 - -
- A duct that is located etween lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014720 -
- UBERON:0014570 ; CA1 alveus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014570 @@ -26968,6 +27929,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014570 + + UBERON:2001879 ; rib of vertebra 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001879 + + uberon/phenoscape-anatomy
+ Rib that articulates with the parapophysis of the first centrum.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001879 +
+ UBERON:3000844 ; sulcus longitudinalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000844 @@ -26993,51 +27966,51 @@ - UBERON:2001040 ; epaxial region somite 24 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001040 + UBERON:0015069 ; distal carpal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015069 - uberon/phenoscape-anatomy
- Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001040 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015069
- UBERON:0014489 ; middle phalanx of digit 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014489 + UBERON:2105385 ; dorsal fin proximal radial element 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105385 -
- A middle phalanx that is part of a digit 3 [Automatically generated definition].
-AmiGO | QuickGO

]]> + none
+
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014489 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105385
- UBERON:2000924 ; myotome somite 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000924 + UBERON:0014789 ; embryo portion of umbilical vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014789 - uberon/phenoscape-anatomy
- Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000924 + Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014789
- UBERON:3000792 ; anterior ramus of cleithrum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000792 + UBERON:0014720 ; interlobar duct + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014720 - uberon/phenoscape-anatomy
- Subdivision of the cleithrum that extends along the anterior edge of the suprascapula.
-AmiGO | QuickGO

]]> +
+ A duct that is located etween lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000792 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014720
@@ -27053,51 +28026,63 @@ - UBERON:2005015 ; afferent lamellar arteriole - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005015 + UBERON:0014489 ; middle phalanx of digit 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014489 + +
+ A middle phalanx that is part of a digit 3 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014489 +
+ + + UBERON:2001040 ; epaxial region somite 24 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001040 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005015 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001040
- UBERON:0014918 ; retrosplenial granular cortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014918 + UBERON:2000924 ; myotome somite 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000924 -
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014918 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000924
- UBERON:0014907 ; intersomitic vessel - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014907 + UBERON:3000792 ; anterior ramus of cleithrum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000792 -
- One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Subdivision of the cleithrum that extends along the anterior edge of the suprascapula.
+AmiGO | QuickGO

]]>
- Tue, 19 Nov 2013 19:49:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014907 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000792
- - UBERON:2105385 ; dorsal fin proximal radial element 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105385 + + UBERON:2005015 ; afferent lamellar arteriole + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005015 - none
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105385 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005015
@@ -27161,51 +28146,51 @@ - UBERON:0014872 ; distal epiphysis of distal phalanx of pedal digit 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014872 + UBERON:2000070 ; obsolete sensory axons peripheral + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000070 -
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014872 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000070
- UBERON:0014789 ; embryo portion of umbilical vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014789 + UBERON:0015019 ; rib endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015019
-
-AmiGO | QuickGO

]]> + A rib bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014789 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015019
- UBERON:2000070 ; obsolete sensory axons peripheral - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000070 + UBERON:3010721 ; limb villosities + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010721 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000070 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010721
- UBERON:3010721 ; limb villosities - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010721 + UBERON:0014872 ; distal epiphysis of distal phalanx of pedal digit 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014872 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010721 + Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014872
@@ -27268,6 +28253,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010764 + + UBERON:0015020 ; otic capsule endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015020 + +
+ A otic capsule bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015020 +
+ UBERON:2000633 ; caudal tuberculum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000633 @@ -27520,6 +28517,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001162 + + UBERON:0015103 ; distal tarsal bone 1 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015103 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015103 +
+ UBERON:2001895 ; hypobranchial 2 element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001895 @@ -27856,18 +28865,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010700 - - UBERON:2000430 ; secondary gustatory tract - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000430 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000430 -
- UBERON:2001561 ; hypural 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001561 @@ -27892,6 +28889,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001611 + + UBERON:2000430 ; secondary gustatory tract + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000430 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000430 +
+ UBERON:2002075 ; distal cartilage of external anterior process of basipterygium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002075 @@ -27941,18 +28950,18 @@ - UBERON:2102026 ; pectoral fin proximal radial element 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102026 + UBERON:0014907 ; intersomitic vessel + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014907 - none
- Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element.
-AmiGO | QuickGO

]]> +
+ One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102026 + Tue, 19 Nov 2013 19:49:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014907
- + UBERON:2002087 ; pectoral axillary process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002087 @@ -27988,6 +28997,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010205 + + UBERON:0015044 ; manual digit 2 metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015044 + +
+ A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015044 +
+ + + UBERON:2102026 ; pectoral fin proximal radial element 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102026 + + none
+ Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102026 +
+ UBERON:2001583 ; preural centrum 1+ ural centrum 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001583 @@ -28061,51 +29094,75 @@ - UBERON:2205372 ; dorsal fin distal radial cartilage 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205372 + UBERON:2000750 ; obsolete fast muscle cell somite 10 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000750 uberon/phenoscape-anatomy
- dorsal fin distal radial 1 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205372 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000750
- UBERON:0014556 ; CA3 stratum radiatum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014556 + UBERON:2005202 ; obsolete RoM1c + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005202 -
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014556 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005202
- UBERON:2000750 ; obsolete fast muscle cell somite 10 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000750 + UBERON:0015084 ; distal carpal bone 1 endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015084 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000750 + Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015084
- UBERON:2005202 ; obsolete RoM1c - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005202 + UBERON:0015033 ; pedal digit 3 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015033 + +
+ A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015033 +
+ + + UBERON:2205372 ; dorsal fin distal radial cartilage 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205372 uberon/phenoscape-anatomy
+ dorsal fin distal radial 1 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205372 +
+ + + UBERON:0014556 ; CA3 stratum radiatum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014556 + +

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005202 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014556
@@ -28288,6 +29345,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005226 + + UBERON:4300026 ; anterior ventrolateral plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300026 + +
+ Dermal bone that is part of the scapular complex in placoderms.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300026 +
+ UBERON:3000906 ; sulcus pro musculo extensori cruris brevis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000906 @@ -28349,15 +29418,15 @@ - UBERON:4300026 ; anterior ventrolateral plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300026 + UBERON:2102280 ; pectoral fin distal radial element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102280 -
- Dermal bone that is part of the scapular complex in placoderms.
-AmiGO | QuickGO

]]> + none
+
+AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300026 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102280
@@ -28373,15 +29442,15 @@ - UBERON:2102280 ; pectoral fin distal radial element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102280 + UBERON:2201416 ; pelvic fin distal radial cartilage 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201416 - none
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ pelvic fin distal radial 3 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102280 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201416
@@ -28396,18 +29465,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300036 - - UBERON:2201416 ; pelvic fin distal radial cartilage 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201416 - - uberon/phenoscape-anatomy
- pelvic fin distal radial 3 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201416 -
- UBERON:2000936 ; dorsal fin distal radial http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000936 @@ -28493,51 +29550,15 @@ - UBERON:2205379 ; dorsal fin distal radial cartilage 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205379 + UBERON:2002162 ; ural vertebra + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002162 uberon/phenoscape-anatomy
- dorsal fin distal radial 8 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205379 -
- - - UBERON:0014797 ; hypobranchial group muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014797 - -
- A jaw muscle that arises from trunk somites and is innervated by spinal nerves.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014797 -
- - - UBERON:0014805 ; inferior nuchal line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014805 - -
- Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014805 -
- - - UBERON:4440009 ; pectoral fin radial skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440009 - -
-
-AmiGO | QuickGO

]]> + Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone.
+AmiGO | QuickGO

]]>
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440009 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002162
@@ -28553,39 +29574,27 @@ - UBERON:0014620 ; cervical spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014620 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014620 -
- - - UBERON:2002162 ; ural vertebra - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002162 + UBERON:2001607 ; basipterygoid process of parasphenoid + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001607 uberon/phenoscape-anatomy
- Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone.
-AmiGO | QuickGO

]]> + Process that is the paired process of the parasphenoid that articulates with the suspensorium.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002162 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001607
- UBERON:2001607 ; basipterygoid process of parasphenoid - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001607 + UBERON:2005056 ; palatocerebral vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005056 uberon/phenoscape-anatomy
- Process that is the paired process of the parasphenoid that articulates with the suspensorium.
-AmiGO | QuickGO

]]> + Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001607 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005056
@@ -28601,15 +29610,15 @@ - UBERON:2005056 ; palatocerebral vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005056 + UBERON:0014620 ; cervical spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014620 - uberon/phenoscape-anatomy
- Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005056 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014620
@@ -28673,6 +29682,54 @@ + UBERON:0014797 ; hypobranchial group muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014797 + +
+ A jaw muscle that arises from trunk somites and is innervated by spinal nerves.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014797 +
+ + + UBERON:0014805 ; inferior nuchal line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014805 + +
+ Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014805 +
+ + + UBERON:4440009 ; pectoral fin radial skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440009 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440009 +
+ + + UBERON:0014634 ; ventral nerve root of cervical spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014634 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014634 +
+ + UBERON:2000516 ; periventricular grey zone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000516 @@ -28685,15 +29742,111 @@ - UBERON:2000913 ; molecular layer valvula cerebelli - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000913 + UBERON:3000078 ; cartilago prootico-occipitalis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000078 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000913 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000078 +
+ + + UBERON:4200091 ; ethomosphenoid region + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200091 + +
+ "Region consisitng of the ethmoid and sphenoid bones." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200091 +
+ + + UBERON:2002285 ; cycloid scale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002285 + + uberon/phenoscape-anatomy
+ Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm).
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002285 +
+ + + UBERON:2205379 ; dorsal fin distal radial cartilage 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205379 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 8 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205379 +
+ + + UBERON:0014796 ; common tendinous ring + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014796 + +
+ Organ component cluster which consists of the fusion of the tendons of origin of the four rectus muscles of the eye. Examples: There are only two instances, right and left common tendinous rings.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014796 +
+ + + UBERON:2000250 ; opercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000250 + + uberon/phenoscape-anatomy
+ Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000250 +
+ + + UBERON:2002000 ; posterior dentation of pectoral fin spine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002000 + + uberon/phenoscape-anatomy
+ Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002000 +
+ + + UBERON:2000654 ; rostral motor nucleus of abducens + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000654 + + uberon/phenoscape-anatomy
+ "Rostral part of the abducens nucleus that mediates motor function." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000654 +
+ + + UBERON:2005029 ; rostral blood island + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005029 + + uberon/phenoscape-anatomy
+ Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005029
@@ -28732,6 +29885,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000363 + + UBERON:2000913 ; molecular layer valvula cerebelli + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000913 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000913 +
+ UBERON:2000608 ; ventral transverse http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000608 @@ -28768,30 +29933,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000867 - - UBERON:0014390 ; muscle layer of ileum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014390 - -
-
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014390 -
- - - UBERON:0014634 ; ventral nerve root of cervical spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014634 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014634 -
- UBERON:3010329 ; obsolete perivitelline space http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010329 @@ -28805,75 +29946,27 @@ - UBERON:3000078 ; cartilago prootico-occipitalis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000078 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000078 -
- - - UBERON:4200091 ; ethomosphenoid region - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200091 + UBERON:0014390 ; muscle layer of ileum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014390
- "Region consisitng of the ethmoid and sphenoid bones." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200091 -
- - - UBERON:2002285 ; cycloid scale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002285 - - uberon/phenoscape-anatomy
- Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm).
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002285 -
- - - UBERON:2000250 ; opercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000250 - - uberon/phenoscape-anatomy
- Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000250 + Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014390
- UBERON:0014796 ; common tendinous ring - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014796 + UBERON:0015007 ; cervical vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015007
- Organ component cluster which consists of the fusion of the tendons of origin of the four rectus muscles of the eye. Examples: There are only two instances, right and left common tendinous rings.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014796 -
- - - UBERON:2002000 ; posterior dentation of pectoral fin spine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002000 - - uberon/phenoscape-anatomy
- Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine.
-AmiGO | QuickGO

]]> + A cervical vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002000 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015007
@@ -28889,27 +29982,27 @@ - UBERON:2000654 ; rostral motor nucleus of abducens - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000654 + UBERON:0014699 ; extraembryonic venous system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014699 - uberon/phenoscape-anatomy
- "Rostral part of the abducens nucleus that mediates motor function." []
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000654 + Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014699
- UBERON:2005029 ; rostral blood island - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005029 + UBERON:0014490 ; middle phalanx of digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014490 - uberon/phenoscape-anatomy
- Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005.
-AmiGO | QuickGO

]]> +
+ A middle phalanx that is part of a digit 4 [Automatically generated definition].
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005029 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014490
@@ -28972,6 +30065,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001775 + + UBERON:2105379 ; dorsal fin distal radial element 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105379 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105379 +
+ UBERON:2001927 ; anterior myodome http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001927 @@ -28996,18 +30101,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000305 - - UBERON:2105379 ; dorsal fin distal radial element 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105379 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105379 -
- UBERON:2001856 ; gill ray http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001856 @@ -29068,18 +30161,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005089 - - UBERON:0014699 ; extraembryonic venous system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014699 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014699 -
- UBERON:2000975 ; somite 13 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000975 @@ -29116,30 +30197,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100002 - - UBERON:1600009 ; pelvic fin basipterygial radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600009 - - none
- Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600009 -
- - - UBERON:0014490 ; middle phalanx of digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014490 - -
- A middle phalanx that is part of a digit 4 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014490 -
- UBERON:2000774 ; hypaxial region somite 28 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000774 @@ -29237,15 +30294,87 @@ - UBERON:2201586 ; pectoral fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201586 + UBERON:0015106 ; distal tarsal bone 2 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015106 - uberon/phenoscape-anatomy
- pectoral fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015106 +
+ + + UBERON:0015016 ; stapes endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015016 + +
+ A stapes bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015016 +
+ + + UBERON:0015027 ; manual digit 3 phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015027 + +
+ A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015027 +
+ + + UBERON:1600009 ; pelvic fin basipterygial radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600009 + + none
+ Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin.
+AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201586 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600009 +
+ + + UBERON:2105225 ; median fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105225 + + none
+ Radial element that is part of a median fin.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105225 +
+ + + UBERON:0014853 ; commissural leaflet of mitral valve + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014853 + +
+ Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle.
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014853 +
+ + + UBERON:4200153 ; metatarsal bone of digit 6 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200153 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200153
@@ -29284,6 +30413,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001123 + + UBERON:2201586 ; pectoral fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201586 + + uberon/phenoscape-anatomy
+ pectoral fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201586 +
+ UBERON:3010161 ; obsolete olfactory basal cell http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010161 @@ -29356,42 +30497,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200070 - - UBERON:2205380 ; dorsal fin proximal radial cartilage 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205380 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 3 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205380 -
- - - UBERON:0014602 ; paraventricular nucleus of the hypothalamus descending division - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014602 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014602 -
- - - UBERON:0014903 ; primordial vasculature - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014903 - -
- A portion of tissue that will develop into vasculature.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014903 -
- UBERON:3010523 ; M. plantaris longus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010523 @@ -29416,6 +30521,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000819 + + UBERON:2205380 ; dorsal fin proximal radial cartilage 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205380 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 3 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205380 +
+ + + UBERON:0014602 ; paraventricular nucleus of the hypothalamus descending division + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014602 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014602 +
+ UBERON:3010719 ; dilated medial process of metacarpal IV http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010719 @@ -29465,87 +30594,27 @@ - UBERON:2001427 ; anterior naris - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001427 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001427 -
- - - UBERON:2202026 ; pectoral fin proximal radial cartilage 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202026 - - uberon/phenoscape-anatomy
- pectoral fin proximal radial 1 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202026 -
- - - UBERON:2105225 ; median fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105225 + UBERON:0014903 ; primordial vasculature + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014903 - none
- Radial element that is part of a median fin.
-AmiGO | QuickGO

]]> +
+ A portion of tissue that will develop into vasculature.
+AmiGO | QuickGO

]]>
Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105225 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014903
- UBERON:2205373 ; dorsal fin distal radial cartilage 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205373 + UBERON:2001427 ; anterior naris + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001427 uberon/phenoscape-anatomy
- dorsal fin distal radial 2 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205373 -
- - - UBERON:0014895 ; somatic muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014895 - -
- A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures.
-AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014895 -
- - - UBERON:0014782 ; allantois of embryonic urinary system - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014782 - -

-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014782 -
- - - UBERON:0014551 ; CA2 stratum oriens - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014551 - -
-
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014551 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001427
@@ -29596,6 +30665,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002265 + + UBERON:2202026 ; pectoral fin proximal radial cartilage 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202026 + + uberon/phenoscape-anatomy
+ pectoral fin proximal radial 1 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202026 +
+ + + UBERON:0014782 ; allantois of embryonic urinary system + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014782 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014782 +
+ + + UBERON:0014551 ; CA2 stratum oriens + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014551 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014551 +
+ UBERON:2001248 ; dorsal scute series http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001248 @@ -29692,30 +30797,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200139 - - UBERON:2001696 ; gongyloid cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001696 - - uberon/phenoscape-anatomy
- Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001696 -
- - - UBERON:2001049 ; obsolete slow muscle cell somite 16 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001049 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001049 -
- UBERON:0014277 ; piriform cortex layer 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014277 @@ -29777,15 +30858,27 @@ - UBERON:0014766 ; right crus of diaphragm - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014766 + UBERON:2001696 ; gongyloid cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001696 -
+ uberon/phenoscape-anatomy
+ Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001696 +
+ + + UBERON:2001049 ; obsolete slow muscle cell somite 16 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001049 + + uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014766 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001049
@@ -30028,6 +31121,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000836 + + UBERON:2200271 ; radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200271 + + uberon/phenoscape-anatomy
+ radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200271 +
+ + + UBERON:4200187 ; hyperphalangy of manus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200187 + +
+ "Increase the number of phalanges per digit beyond their ancestral digital\nformulas. Modified from Cooper and Dawson 2009" []
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200187 +
+ + + UBERON:0014766 ; right crus of diaphragm + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014766 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014766 +
+ + + UBERON:0014543 ; lumbar spinal cord central canal + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014543 + +
+ Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014543 +
+ UBERON:2005365 ; dorsal fin pterygiophore 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005365 @@ -30208,30 +31349,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010711 - - UBERON:2200271 ; radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200271 - - uberon/phenoscape-anatomy
- radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200271 -
- - - UBERON:4200187 ; hyperphalangy of manus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200187 - -
- "Increase the number of phalanges per digit beyond their ancestral digital\nformulas. Modified from Cooper and Dawson 2009" []
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200187 -
- UBERON:2001167 ; vertebral element 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001167 @@ -30328,18 +31445,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002096 - - UBERON:0014543 ; lumbar spinal cord central canal - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014543 - -
- Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014543 -
- UBERON:2000958 ; sclerotome somite 23 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000958 @@ -30376,6 +31481,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000110 + + UBERON:0014635 ; dorsal nerve root of cervical spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014635 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014635 +
+ UBERON:3010743 ; M. flexor antibrachii lateralis superficialis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010743 @@ -30400,18 +31517,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001037 - - UBERON:0014635 ; dorsal nerve root of cervical spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014635 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014635 -
- UBERON:2002056 ; hypural 6 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002056 @@ -30568,18 +31673,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001234 - - UBERON:4200153 ; metatarsal bone of digit 6 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200153 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200153 -
- UBERON:2001978 ; maxillary tooth row http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001978 @@ -30592,18 +31685,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001978 - - UBERON:0014853 ; commissural leaflet of mitral valve - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014853 - -
- Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle.
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014853 -
- UBERON:4200089 ; fibular facet of the calcaneum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200089 @@ -30640,6 +31721,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002010 + + UBERON:0014641 ; terminal nerve root + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014641 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014641 +
+ UBERON:2001188 ; Weberian apparatus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001188 @@ -30664,18 +31757,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001063 - - UBERON:0014641 ; terminal nerve root - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014641 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014641 -
- UBERON:2000530 ; lapillus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000530 @@ -30712,18 +31793,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000657 - - UBERON:0014610 ; thoracic spinal cord ventral horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014610 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014610 -
- UBERON:2001203 ; obsolete ciliary body http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001203 @@ -30856,18 +31925,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014169 - - UBERON:0014874 ; distal epiphysis of distal phalanx of pedal digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014874 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014874 -
- UBERON:2001876 ; basibranchial 3 cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001876 @@ -31072,6 +32129,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010219 + + UBERON:0014874 ; distal epiphysis of distal phalanx of pedal digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014874 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014874 +
+ UBERON:2001045 ; sclerotome somite 5 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001045 @@ -31108,18 +32177,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000493 - - UBERON:1500010 ; pelvic fin middle radial - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500010 - -
- "Pelvic fin radial in the middle of the pelvic fin." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500010 -
- UBERON:0014504 ; proximal phalanx of digit 4 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014504 @@ -31132,6 +32189,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014504 + + UBERON:1500010 ; pelvic fin middle radial + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500010 + +
+ "Pelvic fin radial in the middle of the pelvic fin." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1500010 +
+ UBERON:2002252 ; epural 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002252 @@ -31360,6 +32429,66 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200019 + + UBERON:2205373 ; dorsal fin distal radial cartilage 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205373 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 2 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205373 +
+ + + UBERON:0014895 ; somatic muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014895 + +
+ A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures.
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014895 +
+ + + UBERON:0014859 ; megalopa stage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014859 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014859 +
+ + + UBERON:0014610 ; thoracic spinal cord ventral horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014610 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014610 +
+ + + UBERON:0014486 ; distal phalanx of digit 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014486 + +
+ A distal phalanx that is part of a digit 4 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014486 +
+ UBERON:2001858 ; suprapharyngobranchial http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001858 @@ -31492,18 +32621,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005021 - - UBERON:0014859 ; megalopa stage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014859 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014859 -
- UBERON:4000013 ; mineralized tissue http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000013 @@ -31564,18 +32681,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010694 - - UBERON:0014486 ; distal phalanx of digit 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014486 - -
- A distal phalanx that is part of a digit 4 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014486 -
- UBERON:2000557 ; preural 1 vertebra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000557 @@ -31588,6 +32693,66 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000557 + + UBERON:0015085 ; distal carpal bone 1 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015085 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015085 +
+ + + UBERON:0015036 ; pedal digit metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015036 + +
+ A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015036 +
+ + + UBERON:4300037 ; bony fin ray + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300037 + +
+ "Fin ray that is composed of bone tissue." []
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300037 +
+ + + UBERON:4300031 ; fin web + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300031 + +
+ "Membrane that connects the lepidotrichia or ceratotrichia of a fin." []
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300031 +
+ + + UBERON:4200165 ; basal scute + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200165 + +
+ "A scute parte of the basal surface of the fin in Sarcopterygian fish" []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200165 +
+ UBERON:2000860 ; obsolete fast muscle cell somite 7 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000860 @@ -31625,27 +32790,15 @@ - UBERON:0014908 ; cerebellopontine angle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014908 - -
- Junction between the cerebellum and the pons.
-AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014908 -
- - - UBERON:0014727 ; intercalated duct of salivary gland - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014727 + UBERON:0014918 ; retrosplenial granular cortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014918
- The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014727 + Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014918
@@ -31661,15 +32814,27 @@ - UBERON:2000940 ; posterior lateral line neuromast - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000940 + UBERON:0014727 ; intercalated duct of salivary gland + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014727 + +
+ The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014727 +
+ + + UBERON:2001615 ; sphenotic spine + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001615 uberon/phenoscape-anatomy
- Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
-AmiGO | QuickGO

]]> + Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000940 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001615
@@ -31685,27 +32850,51 @@ - UBERON:2001615 ; sphenotic spine - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001615 + UBERON:2000602 ; uroneural + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000602 uberon/phenoscape-anatomy
- Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired.
-AmiGO | QuickGO

]]> + Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001615 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000602
- UBERON:2000602 ; uroneural - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000602 + UBERON:2000940 ; posterior lateral line neuromast + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000940 uberon/phenoscape-anatomy
- Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone.
-AmiGO | QuickGO

]]> + Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000602 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000940 +
+ + + UBERON:0014288 ; dorsal accessory olive + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014288 + +
+ Regional part of inferior olivary complex
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014288 +
+ + + UBERON:0015021 ; forelimb endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015021 + +
+ A forelimb bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015021
@@ -31720,6 +32909,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010127 + + UBERON:0014908 ; cerebellopontine angle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014908 + +
+ Junction between the cerebellum and the pons.
+AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014908 +
+ UBERON:3000779 ; pectoral fenestra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000779 @@ -31733,18 +32934,6 @@ - UBERON:0014288 ; dorsal accessory olive - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014288 - -
- Regional part of inferior olivary complex
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014288 -
- - UBERON:0014897 ; obliquely striated somatic muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014897 @@ -31840,6 +33029,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005266 + + UBERON:2105380 ; dorsal fin proximal radial element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105380 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105380 +
+ UBERON:2001620 ; lagenar capsule http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001620 @@ -31864,18 +33065,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000642 - - UBERON:2105380 ; dorsal fin proximal radial element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105380 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105380 -
- UBERON:2001946 ; mesethmoid-maxillary ligament http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001946 @@ -31912,6 +33101,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000465 + + UBERON:2101614 ; anal fin middle radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101614 + + none
+ Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101614 +
+ UBERON:4200127 ; suprascapula foramen http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200127 @@ -31936,18 +33137,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002028 - - UBERON:2101614 ; anal fin middle radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101614 - - none
- Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101614 -
- UBERON:4200085 ; obsolete glenoid head of scapula http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200085 @@ -32104,66 +33293,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000649 - - UBERON:0014932 ; periventricular white matter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014932 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Dec 2013 20:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014932 -
- - - UBERON:2205226 ; median fin proximal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205226 - - uberon/phenoscape-anatomy
- median fin proximal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205226 -
- - - UBERON:4300037 ; bony fin ray - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300037 - -
- "Fin ray that is composed of bone tissue." []
-AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300037 -
- - - UBERON:4300031 ; fin web - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300031 - -
- "Membrane that connects the lepidotrichia or ceratotrichia of a fin." []
-AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300031 -
- - - UBERON:4200165 ; basal scute - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200165 - -
- "A scute parte of the basal surface of the fin in Sarcopterygian fish" []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200165 -
- UBERON:3000547 ; rostral process http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000547 @@ -32404,6 +33533,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000748 + + UBERON:4200041 ; aponeurosis palmaris + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200041 + +
+ "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200041 +
+ UBERON:0014448 ; feathered ear tuft http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014448 @@ -32417,15 +33558,27 @@ - UBERON:4200041 ; aponeurosis palmaris - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200041 + UBERON:0015049 ; carpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015049
- "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." []
-AmiGO | QuickGO

]]> + A carpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200041 + Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015049 +
+ + + UBERON:2205226 ; median fin proximal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205226 + + uberon/phenoscape-anatomy
+ median fin proximal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205226
@@ -32500,18 +33653,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005067 - - UBERON:0013778 ; skin of sole of pes - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013778 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013778 -
- UBERON:3000387 ; subotic alae http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000387 @@ -32524,6 +33665,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000387 + + UBERON:3000832 ; anterior lamina recurvata + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000832 + + uberon/phenoscape-anatomy
+ Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000832 +
+ + + UBERON:0013778 ; skin of sole of pes + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013778 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013778 +
+ UBERON:2001058 ; obsolete caudal fin http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001058 @@ -32548,18 +33713,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000711 - - UBERON:3000832 ; anterior lamina recurvata - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000832 - - uberon/phenoscape-anatomy
- Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000832 -
- UBERON:3000226 ; hyolaryngeal complex http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000226 @@ -32609,27 +33762,15 @@ - UBERON:2001419 ; dorsal fin pterygiophore - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001419 - - uberon/phenoscape-anatomy
- A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001419 -
- - - UBERON:3000823 ; sinus interglenoidalis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000823 + UBERON:2001519 ; ceratobranchial 4 cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001519 uberon/phenoscape-anatomy
- Notch or indentation between the pars glenoidalis and pars acromialis of the scapula.
-AmiGO | QuickGO

]]> + Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000823 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001519
@@ -32645,15 +33786,15 @@ - UBERON:2001519 ; ceratobranchial 4 cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001519 + UBERON:2001816 ; anterior nuchal plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001816 uberon/phenoscape-anatomy
- Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone.
-AmiGO | QuickGO

]]> + Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001519 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001816
@@ -32669,15 +33810,63 @@ - UBERON:2001816 ; anterior nuchal plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001816 + UBERON:2001419 ; dorsal fin pterygiophore + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001419 uberon/phenoscape-anatomy
- Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly.
-AmiGO | QuickGO

]]> + A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001816 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001419 +
+ + + UBERON:0015017 ; incus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015017 + +
+ A incus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015017 +
+ + + UBERON:0014932 ; periventricular white matter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014932 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Dec 2013 20:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014932 +
+ + + UBERON:0014843 ; pubioischiofemoralis internus muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014843 + +
+ A dorsal muscle of lower tetrapods that runs from the lumbar region and girdle to the femur.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014843 +
+ + + UBERON:0014787 ; extraembryonic portion of left umbilical vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014787 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 09 Sep 2013 09:45:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014787
@@ -32692,6 +33881,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000743 + + UBERON:3000823 ; sinus interglenoidalis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000823 + + uberon/phenoscape-anatomy
+ Notch or indentation between the pars glenoidalis and pars acromialis of the scapula.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000823 +
+ UBERON:0013763 ; sensory epithelium of spiral organ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013763 @@ -32705,18 +33906,6 @@ - UBERON:2205385 ; dorsal fin proximal radial cartilage 8 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205385 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 8 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205385 -
- - UBERON:0014615 ; accessory nerve root http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014615 @@ -32741,6 +33930,18 @@ + UBERON:2205385 ; dorsal fin proximal radial cartilage 8 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205385 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 8 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205385 +
+ + UBERON:2000297 ; vagal lobe http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000297 @@ -32992,6 +34193,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010175 + + UBERON:2105382 ; dorsal fin proximal radial element 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105382 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105382 +
+ + + UBERON:0014764 ; anatomical line along groove + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014764 + +
+ Anatomical line that delineates a furrow or depression in an organ or tissue.
+AmiGO | QuickGO

]]> +
+ Fri, 09 Aug 2013 15:21:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014764 +
+ + + UBERON:0014594 ; tuberomammillary nucleus ventral part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014594 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014594 +
+ UBERON:2000106 ; extension http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000106 @@ -33016,18 +34253,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001862 - - UBERON:0014764 ; anatomical line along groove - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014764 - -
- Anatomical line that delineates a furrow or depression in an organ or tissue.
-AmiGO | QuickGO

]]> -
- Fri, 09 Aug 2013 15:21:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014764 -
- UBERON:3010065 ; M. gracilis major http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010065 @@ -33040,30 +34265,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010065 - - UBERON:2105382 ; dorsal fin proximal radial element 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105382 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105382 -
- - - UBERON:0014594 ; tuberomammillary nucleus ventral part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014594 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014594 -
- UBERON:2002109 ; uroneural 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002109 @@ -33136,6 +34337,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200053 + + UBERON:4200177 ; supracondyle tubercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200177 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200177 +
+ UBERON:3010780 ; pars recta http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010780 @@ -33160,18 +34373,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000831 - - UBERON:4200177 ; supracondyle tubercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200177 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200177 -
- UBERON:2001430 ; pneumatic duct http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001430 @@ -33208,6 +34409,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000300 + + UBERON:0014736 ; periallocortex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014736 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014736 +
+ UBERON:0014477 ; thoracic skeleton http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014477 @@ -33232,18 +34445,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001808 - - UBERON:0014736 ; periallocortex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014736 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014736 -
- UBERON:3010503 ; oviduct artery http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010503 @@ -33400,18 +34601,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014393 - - UBERON:0014843 ; pubioischiofemoralis internus muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014843 - -
- A dorsal muscle of lower tetrapods that runs from the lumbar region and girdle to the femur.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014843 -
- UBERON:3010637 ; obsolete mucous surface cell http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010637 @@ -33484,18 +34673,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014756 - - UBERON:0014485 ; distal phalanx of digit 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014485 - -
- A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014485 -
- UBERON:2001324 ; enteric musculature http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001324 @@ -33520,18 +34697,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000003 - - UBERON:2001224 ; basibranchial 2 bone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001224 - - uberon/phenoscape-anatomy
- Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001224 -
- UBERON:0014430 ; sciatic notch http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014430 @@ -33545,15 +34710,27 @@ - UBERON:0014787 ; extraembryonic portion of left umbilical vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014787 + UBERON:0014485 ; distal phalanx of digit 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014485
-
-AmiGO | QuickGO

]]> + A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw.
+AmiGO | QuickGO

]]>
- Mon, 09 Sep 2013 09:45:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014787 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014485 +
+ + + UBERON:2001224 ; basibranchial 2 bone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001224 + + uberon/phenoscape-anatomy
+ Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001224
@@ -33664,6 +34841,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001771 + + UBERON:0013773 ; right nipple + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013773 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013773 +
+ UBERON:4200157 ; metatarsal bone of digit 7 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200157 @@ -33688,30 +34877,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000898 - - UBERON:2000373 ; dorsal fin actinotrichium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000373 - - uberon/phenoscape-anatomy
- Actinotrichium that is part of the dorsal fin skeleton.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000373 -
- - - UBERON:0013773 ; right nipple - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013773 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013773 -
- UBERON:2001544 ; sublingual cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001544 @@ -33736,6 +34901,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001882 + + UBERON:2000373 ; dorsal fin actinotrichium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000373 + + uberon/phenoscape-anatomy
+ Actinotrichium that is part of the dorsal fin skeleton.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000373 +
+ UBERON:2001915 ; basibranchial 1 element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001915 @@ -33748,6 +34925,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001915 + + UBERON:0014630 ; ventral gray commissure of spinal cord + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014630 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014630 +
+ UBERON:3010105 ; anterodorsal lateral line nerve (ADLLN) http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010105 @@ -33761,15 +34950,15 @@ - UBERON:2001993 ; branched pectoral fin ray - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001993 + UBERON:2000000 ; Brachet's cleft + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000000 uberon/phenoscape-anatomy
- Pectoral fin lepidotrichium that is distally branched and segmented.
-AmiGO | QuickGO

]]> + The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001993 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000000
@@ -33785,15 +34974,15 @@ - UBERON:0014630 ; ventral gray commissure of spinal cord - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014630 + UBERON:2001993 ; branched pectoral fin ray + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001993 -
-
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Pectoral fin lepidotrichium that is distally branched and segmented.
+AmiGO | QuickGO

]]>
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014630 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001993
@@ -33808,18 +34997,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010042 - - UBERON:2000000 ; Brachet's cleft - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000000 - - uberon/phenoscape-anatomy
- The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000000 -
- UBERON:3000074 ; cartilago orbitalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000074 @@ -33904,42 +35081,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000755 - - UBERON:4200155 ; metapodium bone 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200155 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200155 -
- - - UBERON:0014623 ; substantia gelatinosa of cervical spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014623 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014623 -
- - - UBERON:0014604 ; paraventricular nucleus of the hypothalamus parvicellular division - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014604 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014604 -
- UBERON:3010235 ; nuchal groove http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010235 @@ -33976,6 +35117,102 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010454 + + UBERON:0015101 ; distal tarsal bone pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015101 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015101 +
+ + + UBERON:2105373 ; dorsal fin distal radial element 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105373 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105373 +
+ + + UBERON:0014793 ; musculature of pectoral complex + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014793 + +
+ Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014793 +
+ + + UBERON:4200155 ; metapodium bone 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200155 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200155 +
+ + + UBERON:4200170 ; process 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200170 + +
+ "Process on the humerus of basal tetrapods, anterior to the entepicondyle (see Coates 1996)" []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200170 +
+ + + UBERON:0014695 ; deep auricular artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014695 + +
+ The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014695 +
+ + + UBERON:0014623 ; substantia gelatinosa of cervical spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014623 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014623 +
+ + + UBERON:0014605 ; fundus striati + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014605 + +
+ The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014605 +
+ UBERON:2000084 ; yolk http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000084 @@ -34012,6 +35249,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002119 + + UBERON:2001396 ; parapophysis + rib of vertebra 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001396 + + uberon/phenoscape-anatomy
+ The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001396 +
+ UBERON:0013751 ; metaphysis of radius http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013751 @@ -34025,15 +35274,15 @@ - UBERON:2001396 ; parapophysis + rib of vertebra 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001396 + UBERON:0014604 ; paraventricular nucleus of the hypothalamus parvicellular division + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014604 - uberon/phenoscape-anatomy
- The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface.
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001396 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014604
@@ -34145,15 +35394,15 @@ - UBERON:0014695 ; deep auricular artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014695 + UBERON:2001698 ; anal-fin stay + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001698 -
- The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint.
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone.
+AmiGO | QuickGO

]]>
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014695 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001698
@@ -34168,30 +35417,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014666 - - UBERON:0014605 ; fundus striati - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014605 - -
- The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia)
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014605 -
- - - UBERON:2001698 ; anal-fin stay - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001698 - - uberon/phenoscape-anatomy
- Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001698 -
- UBERON:2005269 ; hypophyseal fenestra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005269 @@ -34385,135 +35610,87 @@ - UBERON:0014914 ; blood-testis barrier - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014914 - -
- "A barrier between the blood or haemolymphatic fluid and the testes." []
-AmiGO | QuickGO

]]> -
- Tue, 03 Dec 2013 01:15:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014914 -
- - - UBERON:2105373 ; dorsal fin distal radial element 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105373 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105373 -
- - - UBERON:2201613 ; dorsal fin middle radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201613 + UBERON:3000115 ; crista lateralis of premaxilla + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000115 uberon/phenoscape-anatomy
- dorsal fin middle radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201613 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000115
- UBERON:1600010 ; pelvic fin middle radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600010 + UBERON:0014638 ; lumbar spinal cord dorsal horn + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014638 - none
- "Pelvic fin radial element in the middle of the pelvic fin." []
-AmiGO | QuickGO

]]> +
+
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600010 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014638
- UBERON:2200623 ; obsolete basipterygium cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200623 + UBERON:2001053 ; primitive internal carotid artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001053 uberon/phenoscape-anatomy
- basipterygium element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200623 -
- - - UBERON:0014793 ; musculature of pectoral complex - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014793 - -
- Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin.
-AmiGO | QuickGO

]]> +
+AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014793 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001053
- UBERON:4200170 ; process 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200170 + UBERON:4200104 ; metacarpal extensor pit + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200104
- "Process on the humerus of basal tetrapods, anterior to the entepicondyle (see Coates 1996)" []
-AmiGO | QuickGO

]]> + "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments. " []
+AmiGO | QuickGO

]]>
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200170 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200104
- UBERON:3000115 ; crista lateralis of premaxilla - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000115 + UBERON:3000032 ; auditory muscles + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000032 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000115 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000032
- UBERON:2001053 ; primitive internal carotid artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001053 + UBERON:3010538 ; pars nervosa + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010538 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001053 -
- - - UBERON:0014638 ; lumbar spinal cord dorsal horn - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014638 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014638 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010538
- UBERON:4200104 ; metacarpal extensor pit - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200104 + UBERON:2000648 ; dorsal fin musculature + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000648
- "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments. " []
-AmiGO | QuickGO

]]> + Musculature that is part of the dorsal fin.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200104 + Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000648
@@ -34529,15 +35706,15 @@ - UBERON:3000032 ; auditory muscles - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000032 + UBERON:3010164 ; ulnar fold + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010164 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000032 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010164
@@ -34577,39 +35754,15 @@ - UBERON:2000648 ; dorsal fin musculature - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000648 - -
- Musculature that is part of the dorsal fin.
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000648 -
- - - UBERON:3010538 ; pars nervosa - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010538 - - uberon/phenoscape-anatomy
- Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010538 -
- - - UBERON:3010164 ; ulnar fold - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010164 + UBERON:2001010 ; obsolete muscle pioneer somite 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001010 uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010164 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001010
@@ -34625,15 +35778,15 @@ - UBERON:2001010 ; obsolete muscle pioneer somite 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001010 + UBERON:0014614 ; cervical spinal cord white matter + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014614 - uberon/phenoscape-anatomy
+

-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001010 + Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014614
@@ -34684,18 +35837,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002015 - - UBERON:0014614 ; cervical spinal cord white matter - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014614 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014614 -
- UBERON:2002091 ; median caudal cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002091 @@ -34792,18 +35933,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000946 - - UBERON:2001302 ; vagal ganglion 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001302 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001302 -
- UBERON:0014385 ; aryepiglottic fold http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014385 @@ -34816,6 +35945,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014385 + + UBERON:2001302 ; vagal ganglion 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001302 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001302 +
+ UBERON:3010424 ; right channel of ventral aorta http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010424 @@ -34829,15 +35970,15 @@ - UBERON:2005376 ; dorsal fin distal radial 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005376 + UBERON:2202279 ; pectoral fin distal radial cartilage 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202279 uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> + pectoral fin distal radial 2 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]>
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005376 + Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202279
@@ -34876,6 +36017,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014527 + + UBERON:2005376 ; dorsal fin distal radial 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005376 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005376 +
+ UBERON:3000931 ; intercalary element of hind digit http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000931 @@ -34960,18 +36113,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005026 - - UBERON:2202279 ; pectoral fin distal radial cartilage 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202279 - - uberon/phenoscape-anatomy
- pectoral fin distal radial 2 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202279 -
- UBERON:3010074 ; M. ileo-femoralis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010074 @@ -35092,6 +36233,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013758 + + UBERON:0014790 ; lingual septum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014790 + +
+ The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014790 +
+ UBERON:2001922 ; inter-frontal joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001922 @@ -35152,18 +36305,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010465 - - UBERON:0014790 ; lingual septum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014790 - -
- The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014790 -
- UBERON:2000479 ; caudal mesencephalo-cerebellar tract http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000479 @@ -35200,18 +36341,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000668 - - UBERON:2200936 ; dorsal fin distal radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200936 - - uberon/phenoscape-anatomy
- dorsal fin distal radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200936 -
- UBERON:2001594 ; caudal fin lower lobe http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001594 @@ -35284,6 +36413,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002235 + + UBERON:0015099 ; distal tarsal bone endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015099 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015099 +
+ UBERON:4000018 ; obsolete ventral hyoid arch http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000018 @@ -35296,6 +36437,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000018 + + UBERON:2200936 ; dorsal fin distal radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200936 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200936 +
+ UBERON:2000912 ; mesenchyme median fin fold http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000912 @@ -35356,6 +36509,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000211 + + UBERON:0015082 ; proximal tarsal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015082 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015082 +
+ + + UBERON:0014684 ; Helicoprion tooth whorl + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014684 + +
+ A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch.
+AmiGO | QuickGO

]]> +
+ Wed, 17 Jul 2013 22:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014684 +
+ + + UBERON:0014591 ; anterior nucleus of hypothalamus posterior part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014591 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014591 +
+ UBERON:2002204 ; lateral nucleus of ventral telencephalon http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002204 @@ -35392,18 +36581,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000716 - - UBERON:0014591 ; anterior nucleus of hypothalamus posterior part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014591 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014591 -
- UBERON:2000805 ; myotome somite 23 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000805 @@ -35440,18 +36617,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010673 - - UBERON:0014684 ; Helicoprion tooth whorl - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014684 - -
- A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch.
-AmiGO | QuickGO

]]> -
- Wed, 17 Jul 2013 22:26:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014684 -
- UBERON:3000799 ; cartilago paraglenoidalis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000799 @@ -35489,18 +36654,6 @@ - UBERON:0014680 ; distal interphalangeal joint of digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014680 - -
-
-AmiGO | QuickGO

]]> -
- Fri, 12 Jul 2013 00:30:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014680 -
- - UBERON:3010404 ; capillary system of liver http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010404 @@ -35621,6 +36774,30 @@ + UBERON:2201613 ; dorsal fin middle radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201613 + + uberon/phenoscape-anatomy
+ dorsal fin middle radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201613 +
+ + + UBERON:0014680 ; distal interphalangeal joint of digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014680 + +
+
+AmiGO | QuickGO

]]> +
+ Fri, 12 Jul 2013 00:30:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014680 +
+ + UBERON:2001164 ; supraneural 6 bone http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001164 @@ -35764,18 +36941,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010293 - - UBERON:2202029 ; pectoral fin proximal radial cartilage 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202029 - - uberon/phenoscape-anatomy
- pectoral fin proximal radial 4 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202029 -
- UBERON:2007061 ; epibranchial field http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007061 @@ -35824,6 +36989,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010178 + + UBERON:2202029 ; pectoral fin proximal radial cartilage 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202029 + + uberon/phenoscape-anatomy
+ pectoral fin proximal radial 4 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2202029 +
+ UBERON:2001787 ; pectoral fin spine http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001787 @@ -35860,6 +37037,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010558 + + UBERON:1600010 ; pelvic fin middle radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600010 + + none
+ "Pelvic fin radial element in the middle of the pelvic fin." []
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:1600010 +
+ + + UBERON:4200184 ; ulnar tuberosity + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200184 + +
+ "his roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/" []
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200184 +
+ UBERON:3000993 ; otic and occipital http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000993 @@ -35884,18 +37085,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000954 - - UBERON:4200184 ; ulnar tuberosity - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200184 - -
- "his roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/" []
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200184 -
- UBERON:2001259 ; forebrain ventricle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001259 @@ -36136,6 +37325,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000318 + + UBERON:0015081 ; proximal tarsal bone endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015081 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015081 +
+ + + UBERON:0015005 ; vertebra endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015005 + +
+ A vertebra bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015005 +
+ + + UBERON:2105378 ; dorsal fin distal radial element 7 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105378 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105378 +
+ + + UBERON:4300024 ; spinal plate + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300024 + +
+ Dermal bone that is part of the scapular complex in placoderms.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300024 +
+ UBERON:0014501 ; proximal phalanx of digit 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014501 @@ -36340,6 +37577,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000453 + + UBERON:2200623 ; obsolete basipterygium cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200623 + + uberon/phenoscape-anatomy
+ basipterygium element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2200623 +
+ UBERON:3010801 ; ramus lateral http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010801 @@ -36400,6 +37649,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000474 + + UBERON:0015037 ; pedal digit 1 metatarsal endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015037 + +
+ A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015037 +
+ + + UBERON:0014914 ; blood-testis barrier + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014914 + +
+ "A barrier between the blood or haemolymphatic fluid and the testes." []
+AmiGO | QuickGO

]]> +
+ Tue, 03 Dec 2013 01:15:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014914 +
+ UBERON:2001784 ; autopalatine-vomer joint http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001784 @@ -36460,6 +37733,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100013 + + UBERON:0014802 ; highest nuchal line + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014802 + +
+ Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached.
+AmiGO | QuickGO

]]> +
+ Sun, 22 Sep 2013 15:41:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014802 +
+ UBERON:3010116 ; lower eyelid texture http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010116 @@ -36496,66 +37781,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000534 - - UBERON:0014904 ; intersegmental pulmonary vein - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014904 - -
- a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein.
-AmiGO | QuickGO

]]> -
- Tue, 19 Nov 2013 19:49:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014904 -
- - - UBERON:2102029 ; pectoral fin proximal radial element 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102029 - - none
- Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102029 -
- - - UBERON:0014887 ; distal epiphysis of distal phalanx of digit - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014887 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014887 -
- - - UBERON:0014802 ; highest nuchal line - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014802 - -
- Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached.
-AmiGO | QuickGO

]]> -
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014802 -
- - - UBERON:0014559 ; CA3 stratum lacunosum moleculare - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014559 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014559 -
- UBERON:3000393 ; pars amphibiorum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000393 @@ -36640,6 +37865,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010087 + + UBERON:2102029 ; pectoral fin proximal radial element 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102029 + + none
+ Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2102029 +
+ UBERON:2001280 ; branchiostegal ray 3 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001280 @@ -36725,27 +37962,15 @@ - UBERON:2105378 ; dorsal fin distal radial element 7 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105378 + UBERON:3010186 ; outer metatarsal tubercle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010186 - none
+ uberon/phenoscape-anatomy

-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2105378 -
- - - UBERON:4300024 ; spinal plate - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300024 - -
- Dermal bone that is part of the scapular complex in placoderms.
-AmiGO | QuickGO

]]> +AmiGO | QuickGO

]]>
- Sun, 22 Sep 2013 15:41:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300024 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010186
@@ -36760,18 +37985,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014685 - - UBERON:3010186 ; outer metatarsal tubercle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010186 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010186 -
- UBERON:2002061 ; predorsal vertebra http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002061 @@ -36844,18 +38057,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007051 - - UBERON:0014484 ; distal phalanx of digit 2 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014484 - -
- A distal phalanx that is part of a digit 2 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014484 -
- UBERON:2007013 ; preplacodal ectoderm http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007013 @@ -37072,6 +38273,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000080 + + UBERON:0014484 ; distal phalanx of digit 2 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014484 + +
+ A distal phalanx that is part of a digit 2 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014484 +
+ UBERON:2000968 ; hypaxial region somite 21 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000968 @@ -37084,30 +38297,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000968 - - UBERON:2101671 ; anal fin radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101671 - - none
- Anal fin radial elements are internal skeletal supports of the anal fin.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101671 -
- - - UBERON:0014870 ; inferior orbital fissure - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014870 - -
- The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014870 -
- UBERON:2000842 ; obsolete slow muscle cell somite 17 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000842 @@ -37168,6 +38357,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4400005 + + UBERON:2101671 ; anal fin radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101671 + + none
+ Anal fin radial elements are internal skeletal supports of the anal fin.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101671 +
+ + + UBERON:0014870 ; inferior orbital fissure + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014870 + +
+ The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014870 +
+ + + UBERON:0014873 ; distal epiphysis of distal phalanx of pedal digit 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014873 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014873 +
+ UBERON:4200141 ; prehallical element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200141 @@ -37288,18 +38513,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200098 - - UBERON:0014873 ; distal epiphysis of distal phalanx of pedal digit 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014873 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014873 -
- UBERON:2000813 ; infraorbital lateral line neuromast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000813 @@ -37408,6 +38621,54 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000116 + + UBERON:0015042 ; manual digit metacarpus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015042 + +
+ A manual digit metacarpus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015042 +
+ + + UBERON:2100623 ; basipterygium element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100623 + + none
+ Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962).
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100623 +
+ + + UBERON:4200174 ; distal condyle of humerus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200174 + +
+ "The area encompassing the radial and ulnar condyles of the humerus." []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200174 +
+ + + UBERON:0014555 ; CA2 stratum radiatum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014555 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014555 +
+ UBERON:3010031 ; ventral glands http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010031 @@ -37444,18 +38705,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005050 - - UBERON:0014555 ; CA2 stratum radiatum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014555 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014555 -
- UBERON:2000454 ; ventral accessory optic nucleus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000454 @@ -37564,30 +38813,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010231 - - UBERON:2100623 ; basipterygium element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100623 - - none
- Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962).
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100623 -
- - - UBERON:4200174 ; distal condyle of humerus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200174 - -
- "The area encompassing the radial and ulnar condyles of the humerus." []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200174 -
- UBERON:3010837 ; Apical Supplementary Element http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010837 @@ -37601,39 +38826,15 @@ - UBERON:2002012 ; dentary foramen - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002012 - - uberon/phenoscape-anatomy
- Foramen located on the dentary for passage of the mandibular nerve.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002012 -
- - - UBERON:4200081 ; hypocleideum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200081 - -
- "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." []
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200081 -
- - - UBERON:2001554 ; obsolete lepidotrichium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001554 + UBERON:4000168 ; dorsal fin skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000168 uberon/phenoscape-anatomy
- Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials.
-AmiGO | QuickGO

]]> + Median fin skeleton located on the dorsal surface of the organism.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001554 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000168
@@ -37648,18 +38849,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013774 - - UBERON:4000168 ; dorsal fin skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000168 - - uberon/phenoscape-anatomy
- Median fin skeleton located on the dorsal surface of the organism.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000168 -
- UBERON:2002270 ; pelvic fin spine http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002270 @@ -37769,15 +38958,39 @@ - UBERON:0013746 ; basibranchial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013746 + UBERON:2002012 ; dentary foramen + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002012 + + uberon/phenoscape-anatomy
+ Foramen located on the dentary for passage of the mandibular nerve.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002012 +
+ + + UBERON:4200081 ; hypocleideum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200081
- Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton.
-AmiGO | QuickGO

]]> + "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." []
+AmiGO | QuickGO

]]>
- Mon, 06 May 2013 23:33:34 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013746 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200081 +
+ + + UBERON:2001554 ; obsolete lepidotrichium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001554 + + uberon/phenoscape-anatomy
+ Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001554
@@ -37792,6 +39005,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010380 + + UBERON:0013746 ; basibranchial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013746 + +
+ Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton.
+AmiGO | QuickGO

]]> +
+ Mon, 06 May 2013 23:33:34 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013746 +
+ UBERON:2000963 ; obsolete slow muscle cell somite 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000963 @@ -38032,18 +39257,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001335 - - UBERON:0014398 ; respiratory muscle - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014398 - -
- "Muscle that is involved in breathing" []
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014398 -
- UBERON:0014849 ; hemotrichorial placental membrane http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014849 @@ -38056,6 +39269,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014849 + + UBERON:0014398 ; respiratory muscle + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014398 + +
+ "Muscle that is involved in breathing" []
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014398 +
+ UBERON:2002240 ; Purkinje cell layer corpus cerebelli http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002240 @@ -38092,30 +39317,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001713 - - UBERON:2205381 ; dorsal fin proximal radial cartilage 4 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205381 - - uberon/phenoscape-anatomy
- dorsal fin proximal radial 4 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205381 -
- - - UBERON:4300032 ; posterior dorsal fin basal cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300032 - -
- "The large cartilage of the posterior dorsal fin, on which the radials articulate distally." []
-AmiGO | QuickGO

]]> -
- Wed, 09 Oct 2013 08:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300032 -
- UBERON:2001734 ; posterior process of basipterygium http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001734 @@ -38188,6 +39389,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010720 + + UBERON:2205381 ; dorsal fin proximal radial cartilage 4 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205381 + + uberon/phenoscape-anatomy
+ dorsal fin proximal radial 4 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205381 +
+ + + UBERON:4300032 ; posterior dorsal fin basal cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300032 + +
+ "The large cartilage of the posterior dorsal fin, on which the radials articulate distally." []
+AmiGO | QuickGO

]]> +
+ Wed, 09 Oct 2013 08:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4300032 +
+ UBERON:4200045 ; articular surface for the astragalus on the calcaneum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200045 @@ -38212,42 +39437,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000088 - - UBERON:2205376 ; dorsal fin distal radial cartilage 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205376 - - uberon/phenoscape-anatomy
- dorsal fin distal radial 5 element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205376 -
- - - UBERON:0014890 ; right hemisphere of cerebellum - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014890 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 05 Nov 2013 19:58:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014890 -
- - - UBERON:0014780 ; palatine aponeurosis - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014780 - -
- Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate.
-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014780 -
- UBERON:2001483 ; middle lateral line ganglion http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001483 @@ -38272,6 +39461,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000394 + + UBERON:0014936 ; cerebral cortex ventricular layer + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014936 + +
+
+AmiGO | QuickGO

]]> +
+ Sun, 15 Dec 2013 12:26:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014936 +
+ + + UBERON:2205376 ; dorsal fin distal radial cartilage 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205376 + + uberon/phenoscape-anatomy
+ dorsal fin distal radial 5 element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2205376 +
+ UBERON:2000503 ; dorsal oblique branchial muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000503 @@ -38308,6 +39521,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000628 + + UBERON:0014890 ; right hemisphere of cerebellum + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014890 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 05 Nov 2013 19:58:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014890 +
+ + + UBERON:0014780 ; palatine aponeurosis + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014780 + +
+ Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate.
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014780 +
+ UBERON:2001263 ; ovarian follicle stage I http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001263 @@ -38332,18 +39569,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010524 - - UBERON:0014596 ; paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014596 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014596 -
- UBERON:2007005 ; hemal prezygapophysis http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2007005 @@ -38368,18 +39593,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002030 - - UBERON:2000043 ; obsolete muscle pioneer somite 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000043 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000043 -
- UBERON:0013768 ; great vessel of heart http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013768 @@ -38392,6 +39605,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0013768 + + UBERON:0014596 ; paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014596 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014596 +
+ + + UBERON:2000043 ; obsolete muscle pioneer somite 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000043 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000043 +
+ UBERON:2001467 ; pharyngeal mesoderm http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001467 @@ -38416,18 +39653,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200048 - - UBERON:0014443 ; inferior ischial ramus - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014443 - -
- The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen.
-AmiGO | QuickGO

]]> -
- Wed, 22 May 2013 21:07:05 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014443 -
- UBERON:2001547 ; abdominal scute http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001547 @@ -38440,6 +39665,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001547 + + UBERON:0014443 ; inferior ischial ramus + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014443 + +
+ The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen.
+AmiGO | QuickGO

]]> +
+ Wed, 22 May 2013 21:07:05 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014443 +
+ UBERON:2000984 ; superior reticular formation tegmentum http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000984 @@ -38452,30 +39689,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000984 - - UBERON:2100936 ; dorsal fin distal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100936 - - none
- Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100936 -
- - - UBERON:0014707 ; hyoplastron - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014707 - -
- A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014707 -
- UBERON:2000768 ; hypaxial region somite 14 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000768 @@ -38512,6 +39725,102 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010101 + + UBERON:0015095 ; distal carpal bone 4 pre-cartilage condensation + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015095 + +
+
+AmiGO | QuickGO

]]> +
+ Wed, 18 Dec 2013 08:04:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015095 +
+ + + UBERON:0015024 ; manual digit phalanx endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015024 + +
+ A manual digit phalanx bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015024 +
+ + + UBERON:0014904 ; intersegmental pulmonary vein + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014904 + +
+ a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein.
+AmiGO | QuickGO

]]> +
+ Tue, 19 Nov 2013 19:49:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014904 +
+ + + UBERON:2100936 ; dorsal fin distal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100936 + + none
+ Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2100936 +
+ + + UBERON:0014887 ; distal epiphysis of distal phalanx of digit + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014887 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014887 +
+ + + UBERON:0014707 ; hyoplastron + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014707 + +
+ A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014707 +
+ + + UBERON:0014559 ; CA3 stratum lacunosum moleculare + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014559 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014559 +
+ + + UBERON:0014521 ; anterodorsal nucleus of medial geniculate body + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014521 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014521 +
+ UBERON:2000851 ; somite 12 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000851 @@ -38608,18 +39917,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010799 - - UBERON:2001589 ; propterygium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001589 - - uberon/phenoscape-anatomy
- The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001589 -
- UBERON:0014481 ; sex skin http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014481 @@ -38632,6 +39929,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014481 + + UBERON:2001589 ; propterygium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001589 + + uberon/phenoscape-anatomy
+ The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001589 +
+ UBERON:2001036 ; sclerotome somite 10 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001036 @@ -38656,6 +39965,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000767 + + UBERON:4200010 ; ventral humeral ridge + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200010 + +
+ "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." []
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200010 +
+ UBERON:0014439 ; inferior pubic ramus http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014439 @@ -38669,27 +39990,27 @@ - UBERON:4200010 ; ventral humeral ridge - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200010 + UBERON:2001626 ; premaxillary tooth + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001626 -
- "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." []
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Tooth that is attached to the premaxilla.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200010 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001626
- UBERON:2001626 ; premaxillary tooth - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001626 + UBERON:3000237 ; infrarostral cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000237 uberon/phenoscape-anatomy
- Tooth that is attached to the premaxilla.
-AmiGO | QuickGO

]]> + Larval lower jaw lies anterior to Meckels cartilage.
+AmiGO | QuickGO

]]>
Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001626 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000237
@@ -38704,30 +40025,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014409 - - UBERON:0014521 ; anterodorsal nucleus of medial geniculate body - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014521 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014521 -
- - - UBERON:3000237 ; infrarostral cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000237 - - uberon/phenoscape-anatomy
- Larval lower jaw lies anterior to Meckels cartilage.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000237 -
- UBERON:0014601 ; paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014601 @@ -38872,6 +40169,30 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000278 + + UBERON:0015048 ; basioccipital endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015048 + +
+ A basioccipital bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015048 +
+ + + UBERON:2101416 ; pelvic fin distal radial element 3 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101416 + + none
+
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101416 +
+ UBERON:0014777 ; spinal neuromere http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014777 @@ -38884,6 +40205,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014777 + + UBERON:0014548 ; CA1 stratum pyramidale hippocampi + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014548 + +
+ CA1 part of stratum pyramidale hippocampi
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014548 +
+ UBERON:2001102 ; immature anterior otolith http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001102 @@ -38920,18 +40253,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001298 - - UBERON:2101416 ; pelvic fin distal radial element 3 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101416 - - none
-
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101416 -
- UBERON:2001023 ; epaxial region somite 19 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001023 @@ -38968,30 +40289,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001694 - - UBERON:0014548 ; CA1 stratum pyramidale hippocampi - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014548 - -
- CA1 part of stratum pyramidale hippocampi
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014548 -
- - - UBERON:2002055 ; vertebra 6 - vertebra 7 joint - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002055 - - uberon/phenoscape-anatomy
- Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002055 -
- UBERON:0014783 ; cloacal muscle http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014783 @@ -39016,6 +40313,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014767 + + UBERON:2002055 ; vertebra 6 - vertebra 7 joint + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002055 + + uberon/phenoscape-anatomy
+ Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7.
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002055 +
+ UBERON:0014464 ; renal fat pad http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014464 @@ -39041,15 +40350,15 @@ - UBERON:2101587 ; pectoral fin proximal radial element - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101587 + UBERON:2000952 ; sclerotome somite 1 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000952 - none
- Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid).
-AmiGO | QuickGO

]]> + uberon/phenoscape-anatomy
+ Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995.
+AmiGO | QuickGO

]]>
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101587 + Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000952
@@ -39064,18 +40373,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014552 - - UBERON:2000952 ; sclerotome somite 1 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000952 - - uberon/phenoscape-anatomy
- Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995.
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000952 -
- UBERON:4000045 ; obsolete preosteoblast http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4000045 @@ -39292,6 +40589,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000544 + + UBERON:0015011 ; tibiotarsus endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015011 + +
+ A tibiotarsus bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015011 +
+ UBERON:2000864 ; epaxial region somite 1 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000864 @@ -39304,6 +40613,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000864 + + UBERON:2101587 ; pectoral fin proximal radial element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101587 + + none
+ Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid).
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2101587 +
+ UBERON:2001168 ; vertebral element 2 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001168 @@ -39352,66 +40673,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001014 - - UBERON:2201614 ; anal fin middle radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201614 - - uberon/phenoscape-anatomy
- anal fin middle radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201614 -
- - - UBERON:4200152 ; os sesamoides tarsale - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200152 - -
- "Sesamoid bone in the tarsal region." []
-AmiGO | QuickGO

]]> -
- Tue, 10 Sep 2013 12:34:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200152 -
- - - UBERON:0014730 ; osteon - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014730 - -
- A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae.
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014730 -
- - - UBERON:0014595 ; paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014595 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014595 -
- - - UBERON:0014645 ; nucleus H - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014645 - -
- A nucleus present in the ventral tegmentum of squalomorph sharks.
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014645 -
- UBERON:2005303 ; caudal fin lymph vessel http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005303 @@ -39496,6 +40757,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200002 + + UBERON:0015056 ; ischial endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015056 + +
+ A ischial bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015056 +
+ UBERON:3010827 ; anterior prenasal cartilage http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010827 @@ -39556,6 +40829,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001966 + + UBERON:0014730 ; osteon + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014730 + +
+ A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae.
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014730 +
+ UBERON:2001977 ; pad http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001977 @@ -39640,6 +40925,42 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001518 + + UBERON:4200152 ; os sesamoides tarsale + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200152 + +
+ "Sesamoid bone in the tarsal region." []
+AmiGO | QuickGO

]]> +
+ Tue, 10 Sep 2013 12:34:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200152 +
+ + + UBERON:0014595 ; paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014595 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014595 +
+ + + UBERON:0014645 ; nucleus H + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014645 + +
+ A nucleus present in the ventral tegmentum of squalomorph sharks.
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014645 +
+ UBERON:2000876 ; obsolete fast muscle cell somite 11 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000876 @@ -39724,6 +41045,78 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001815 + + UBERON:0015013 ; fibula endochondral element + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015013 + +
+ A fibula bone or its cartilage or pre-cartilage precursor.
+AmiGO | QuickGO

]]> +
+ Tue, 17 Dec 2013 20:23:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0015013 +
+ + + UBERON:2201614 ; anal fin middle radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201614 + + uberon/phenoscape-anatomy
+ anal fin middle radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201614 +
+ + + UBERON:2201671 ; anal fin radial cartilage + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201671 + + uberon/phenoscape-anatomy
+ anal fin radial element that is composed of cartilage tissue.
+AmiGO | QuickGO

]]> +
+ Wed, 13 Nov 2013 00:14:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201671 +
+ + + UBERON:4440008 ; fin radial skeleton + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440008 + +
+
+AmiGO | QuickGO

]]> +
+ Tue, 03 Sep 2013 17:59:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440008 +
+ + + UBERON:0014733 ; dorsal ventricular ridge of pallium + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014733 + +
+ Central region of the telencephalon, located in the pallium. Found in reptiles and birds
+AmiGO | QuickGO

]]> +
+ Tue, 23 Jul 2013 23:27:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014733 +
+ + + UBERON:0014491 ; middle phalanx of digit 5 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014491 + +
+ A middle phalanx that is part of a digit 5 [Automatically generated definition].
+AmiGO | QuickGO

]]> +
+ Mon, 08 Jul 2013 08:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014491 +
+ UBERON:3010109 ; anteroventral lateral line nerve (AVLLN) http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010109 @@ -39952,18 +41345,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4100001 - - UBERON:2201671 ; anal fin radial cartilage - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201671 - - uberon/phenoscape-anatomy
- anal fin radial element that is composed of cartilage tissue.
-AmiGO | QuickGO

]]> -
- Wed, 13 Nov 2013 00:14:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2201671 -
- UBERON:4200181 ; astragalus head http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200181 @@ -39976,18 +41357,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200181 - - UBERON:0014733 ; dorsal ventricular ridge of pallium - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014733 - -
- Central region of the telencephalon, located in the pallium. Found in reptiles and birds
-AmiGO | QuickGO

]]> -
- Tue, 23 Jul 2013 23:27:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014733 -
- UBERON:2001997 ; parietal-supraoccipital http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001997 @@ -40120,6 +41489,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001253 + + UBERON:4200188 ; manual toe disc + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200188 + +
+
+AmiGO | QuickGO

]]> +
+ Mon, 21 Oct 2013 18:43:00 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200188 +
+ UBERON:4200180 ; semilunate carpal http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200180 @@ -40240,18 +41621,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3000177 - - UBERON:4200188 ; manual toe disc - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200188 - -
-
-AmiGO | QuickGO

]]> -
- Mon, 21 Oct 2013 18:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4200188 -
- UBERON:2000167 ; obsolete anal fin skeleton http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000167 @@ -40648,18 +42017,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000404 - - UBERON:0014491 ; middle phalanx of digit 5 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014491 - -
- A middle phalanx that is part of a digit 5 [Automatically generated definition].
-AmiGO | QuickGO

]]> -
- Mon, 08 Jul 2013 08:43:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014491 -
- UBERON:2000500 ; dorsal erector http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000500 @@ -40768,18 +42125,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000857 - - UBERON:4440008 ; fin radial skeleton - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440008 - -
-
-AmiGO | QuickGO

]]> -
- Tue, 03 Sep 2013 17:59:00 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:4440008 -
- UBERON:2001931 ; infranuchal scute http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001931 @@ -40816,18 +42161,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005032 - - UBERON:2005083 ; ventral branch nasal ciliary artery - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005083 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005083 -
- UBERON:0014382 ; collection of hairs on head or neck http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014382 @@ -40840,6 +42173,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:0014382 + + UBERON:2005083 ; ventral branch nasal ciliary artery + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005083 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2005083 +
+ UBERON:2000791 ; obsolete muscle pioneer somite 13 http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2000791 @@ -40888,18 +42233,6 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2002290 - - UBERON:3010303 ; fasciculated network of fibrils - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010303 - - uberon/phenoscape-anatomy
-
-AmiGO | QuickGO

]]> -
- Wed, 03 Jul 2013 23:37:12 +0000 - http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010303 -
- UBERON:2001470 ; anterior lateral line http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001470 @@ -40912,6 +42245,18 @@ http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:2001470 + + UBERON:3010303 ; fasciculated network of fibrils + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010303 + + uberon/phenoscape-anatomy
+
+AmiGO | QuickGO

]]> +
+ Wed, 03 Jul 2013 23:37:12 +0000 + http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010303 +
+ UBERON:3010794 ; oral ramule http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=UBERON:3010794 diff --git a/diffs/uberon-combined-diff.txt b/diffs/uberon-combined-diff.txt index 1f7861c11d..c1f699eb06 100644 --- a/diffs/uberon-combined-diff.txt +++ b/diffs/uberon-combined-diff.txt @@ -1,32 +1,93 @@ -releases/2013-12-15 +releases/2014-01-11 + + Fixing def of hem.poi system. Adding provenance notes on relationships. Starting to address issue #388 + Definition improvements. Endochondral element refactoring continued + * neuropore fixes + * fixed defs + * split lamina terminalis into embryonic and mature + fixed unsatisfiable class, equivalence axioms and naming conventions. Issue #382 + new terms: + UBERON:0015117 lamina terminalis of cerebral hemisphere + UBERON:4300081 mesopterygium element + UBERON:4300082 metapterygium element + UBERON:4300083 propterygium element - * NTs for cerebral cortex precursor layers - * Moved basipterygium element back under endochondral element. Obsoleted pelvic fin basipterygial radial element [wdahdul] ! uberon definition changes ! ! Files used: -! file 1 (old): 10:12:2013 20:58, cvs revision unknown -! file 2 (new): 15:12:2013 12:26, cvs revision unknown +! file 1 (old): 18:12:2013 08:04, cvs revision unknown +! file 2 (new): 11:01:2014 11:00, cvs revision unknown ! ! Format of first line of each entry: ! Term ID : term name ( total # annots / # direct annots) -UBERON:0000076 : external ectoderm -OLD: The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]. -NEW: the surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm. +UBERON:0000642 : suspensory ligament of duodenum +OLD: Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. +NEW: A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery + + +UBERON:0002205 : manubrium of sternum +OLD: broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]. +NEW: The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]. + + +UBERON:0002390 : hematopoietic system +OLD: The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]. +NEW: Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes. + + +UBERON:0003054 : roof plate +OLD: a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. +NEW: a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. + + +UBERON:0003079 : floor plate +OLD: A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]. +NEW: The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube. + + +UBERON:0004547 : decidua capsularis +OLD: Endometrium that covers the implanted blastocyst. +NEW: The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity + +UBERON:0005070 : anterior neuropore +OLD: The anterior neuropore appears before the process of neural tube closure is complete[GO]. +NEW: The neuropore at the anterior (rostral) end of the neural tube. -UBERON:0000453 : decidua basalis -OLD: Region between the blastocyst and the myometrium. -NEW: area of uterine endometrium found between the implanted chorionic vesicle and the myometrium. +UBERON:0005071 : posterior neuropore +OLD: The posterior neuropore appears before the process of neural tube closure is complete[GO]. +NEW: The neuropore at the posterior (caudal) end of the neural tube. -UBERON:0007383 : enveloping layer of ectoderm -OLD: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. -NEW: Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. + +UBERON:0005077 : neuropore +OLD: Joined neural folds at either end of the neural tube.[GO]. +NEW: A temporary opening leading from the central canal of the embryonic neural tube to the exterior. + + +UBERON:0005078 : lamina terminalis of neural tube +(was lamina terminalis of forebrain vesicle) +OLD: The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development. +NEW: The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon. + + +UBERON:0005432 : aortic sac +OLD: the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]. +NEW: The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates + + +UBERON:0006211 : buccopharyngeal membrane +OLD: The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area. +NEW: The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx. + + +UBERON:0009210 : pharyngeal membrane +OLD: a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo. +NEW: a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo. @@ -35,23 +96,23 @@ Ontology Comparison Report ========================== Files used: -- file 1 (old): uberon-lastbuild.obo; data version: releases/2013-12-10; date: 10:12:2013 20:58 -- file 2 (new): uberon.obo; data version: releases/2013-12-15; date: 15:12:2013 12:26 +- file 1 (old): uberon-lastbuild.obo; data version: releases/2013-12-18; date: 18:12:2013 08:04 +- file 2 (new): uberon.obo; data version: releases/2014-01-11; date: 11:01:2014 11:00 NEW TERMS ========= ID name namespace -UBERON:0014934 cerebral cortex mantle layer -UBERON:0014935 cerebral cortex marginal layer -UBERON:0014936 cerebral cortex ventricular layer -UBERON:0014940 cerebral cortex subventricular zone -UBERON:0014950 layer of developing cerebral cortex +UBERON:0015117 lamina terminalis of cerebral hemisphere +UBERON:4300081 mesopterygium element +UBERON:4300082 metapterygium element +UBERON:4300083 propterygium element OBSOLETIONS =========== -UBERON:1600009, obsolete pelvic fin basipterygial radial element (none) + +None TERM MERGES @@ -65,33 +126,78 @@ TERM CHANGES KEY: 'A' : added, 'D' : deleted, 'C' : changed -Term ID name def comment synonym xref is_a relationship is_obsolete -UBERON:0000060 1 D, 1 A -UBERON:0000076 C C 1 A 1 D 1 D, 2 A -UBERON:0000453 C 1 A -UBERON:0001272 1 A -UBERON:0003662 1 A -UBERON:0003663 1 A -UBERON:0004035 2 A 1 A 2 D, 1 A -UBERON:0004040 1 A 2 D, 1 A -UBERON:0005343 A 2 A 2 D, 1 A -UBERON:0005390 1 A -UBERON:0005391 1 A -UBERON:0005392 1 A -UBERON:0005393 1 A -UBERON:0005394 1 A -UBERON:0005395 1 A -UBERON:0005863 2 D, 1 A -UBERON:0006083 C 2 D, 4 A 1 A 1 D, 1 A -UBERON:0007383 C 1 D, 1 A -UBERON:0007721 1 D, 1 A -UBERON:0007722 1 D, 1 A -UBERON:0012132 1 D, 1 A -UBERON:0014734 1 D -UBERON:1600009 C A 1 D A -UBERON:2000623 1 D, 1 A -UBERON:2001539 1 D, 1 A -UBERON:2100623 1 D, 2 A +Term ID name def comment synonym xref is_a intersection_of union_of relationship +UBERON:0000453 +UBERON:0000642 C +UBERON:0000930 +UBERON:0001687 C C +UBERON:0001688 C 1 A +UBERON:0001689 C 2 A +UBERON:0002002 1 D, 1 A +UBERON:0002205 C +UBERON:0002390 C D 1 D, 1 A +UBERON:0002689 C 2 D, 1 A +UBERON:0003054 C 1 D, 3 A 1 D, 1 A +UBERON:0003079 C 1 D, 4 A 2 D, 2 A +UBERON:0003252 1 A +UBERON:0003307 2 D, 1 A +UBERON:0003308 2 D, 1 A +UBERON:0003309 2 D, 1 A +UBERON:0003310 2 D, 1 A +UBERON:0003311 2 D, 1 A +UBERON:0003957 D +UBERON:0004547 C +UBERON:0004601 1 D, 2 A +UBERON:0004602 1 D, 2 A +UBERON:0004603 1 A +UBERON:0004604 1 A +UBERON:0004605 1 A +UBERON:0004606 1 A +UBERON:0004607 1 A +UBERON:0004608 1 A +UBERON:0004609 1 A +UBERON:0004610 1 A +UBERON:0004611 1 A +UBERON:0005070 C D 2 A 1 A +UBERON:0005071 C 2 A 1 A +UBERON:0005077 C 1 A 2 A 1 A +UBERON:0005078 C C 1 D, 1 A 3 D, 3 A 2 D, 2 A +UBERON:0005432 C +UBERON:0005723 2 D, 1 A +UBERON:0006211 C 3 A +UBERON:0006248 1 D +UBERON:0006820 +UBERON:0007374 2 D, 1 A +UBERON:0007722 1 D, 1 A +UBERON:0009210 C 1 A +UBERON:0009840 1 A +UBERON:0009841 1 A +UBERON:0010054 1 D, 1 A +UBERON:0010055 3 D, 1 A +UBERON:0010078 C +UBERON:0010757 1 A +UBERON:0011606 2 A 1 A +UBERON:0011607 2 A 1 A +UBERON:0011608 1 A 1 D, 1 A +UBERON:0011820 2 A +UBERON:0012429 1 A +UBERON:0013220 1 D, 1 A +UBERON:0015016 1 A 1 A +UBERON:0015017 1 A 1 A +UBERON:0015018 1 A 1 A 1 A + + + +OTHER STANZA TYPES +================== + +New Stanzas +==========- + +Stanza type ID Name +Typedef in_dorsal_side_of in_dorsal_side_of +Typedef in_ventral_side_of in_ventral_side_of + @@ -101,19 +207,19 @@ FILE STATS Term counts for the old and new files Ontology Old file New file Change -none 273 272 -1 - (217 defined) (216 defined) -uberon 8825 8830 +5 - (7212 defined) (7212 defined) +none 272 272 + (216 defined) (216 defined) +uberon 8938 8942 +4 + (7277 defined) (7278 defined) uberon/phenoscape-anatomy 2304 2304 (1588 defined) (1588 defined) -Obsolete 620 621 +1 - (5.2% of total) (5.2% of total) (+0.2%) +Obsolete 621 621 0 + (5.1% of total) (5.1% of total) (0.0%) -Totals 11402 11406 +5 (0.0%) - 9017 (79.1%) defined 9016 (79.0%) defined - 12022 inc. obs 12027 inc. obs +Totals 11514 11518 +4 (0.0%) + 9081 (78.9%) defined 9082 (78.9%) defined + 12135 inc. obs 12139 inc. obs diff --git a/make-bridge-ontologies-from-xrefs.pl b/make-bridge-ontologies-from-xrefs.pl index 5a6b475996..9e92c49e40 100755 --- a/make-bridge-ontologies-from-xrefs.pl +++ b/make-bridge-ontologies-from-xrefs.pl @@ -8,11 +8,11 @@ my $n; my $n_xrefs = 0; my $stype; +my %nh = (); my @fns = (); my $base = 'uberon'; - while ($ARGV[0] =~ /^\-/) { my $opt = shift @ARGV; if ($opt eq '-b' || $opt eq '--base') { @@ -46,6 +46,7 @@ } elsif (/^name:\s*(.*)/) { $n = $1; + $nh{$id} = $n; } elsif (/^xref:\s*(\S+)(.*)/) { next unless $stype eq 'Term'; @@ -58,10 +59,13 @@ if ($fh) { $n_xrefs++; my ($t,$rel,$filler) = @{$tmap{$s}}; + $n = $nh{$id}; print $fh "[Term]\n"; print $fh "id: $x ! $cmt\n"; my $unique_label = mk_unique_label($s,$n); - print $fh "property_value: IAO:0000589 \"$unique_label\" xsd:string\n"; + if ($n) { + print $fh "property_value: IAO:0000589 \"$unique_label\" xsd:string\n"; + } if ($t eq 'equivalent') { print $fh "equivalent_to: $id ! $n\n"; } diff --git a/md/BFO/30/BFO_0000030.md b/md/BFO/30/BFO_0000030.md index e51d711a4f..0e61043a9d 100644 --- a/md/BFO/30/BFO_0000030.md +++ b/md/BFO/30/BFO_0000030.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/BFO/40/BFO_0000040.md b/md/BFO/40/BFO_0000040.md index ae709b12c8..b99ab0d088 100644 --- a/md/BFO/40/BFO_0000040.md +++ b/md/BFO/40/BFO_0000040.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/00/CHEBI_33300.md b/md/CHEBI/00/CHEBI_33300.md index e1906305ba..ff1f75d97a 100644 --- a/md/CHEBI/00/CHEBI_33300.md +++ b/md/CHEBI/00/CHEBI_33300.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/00/CHEBI_33700.md b/md/CHEBI/00/CHEBI_33700.md index dd2a1cec5c..3b1fe7e24d 100644 --- a/md/CHEBI/00/CHEBI_33700.md +++ b/md/CHEBI/00/CHEBI_33700.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/02/CHEBI_33302.md b/md/CHEBI/02/CHEBI_33302.md index feefe3f627..532be87f0d 100644 --- a/md/CHEBI/02/CHEBI_33302.md +++ b/md/CHEBI/02/CHEBI_33302.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/03/CHEBI_33303.md b/md/CHEBI/03/CHEBI_33303.md index ca711c48b0..9686b441b4 100644 --- a/md/CHEBI/03/CHEBI_33303.md +++ b/md/CHEBI/03/CHEBI_33303.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/04/CHEBI_23004.md b/md/CHEBI/04/CHEBI_23004.md index 662ca17928..604569725a 100644 --- a/md/CHEBI/04/CHEBI_23004.md +++ b/md/CHEBI/04/CHEBI_23004.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/04/CHEBI_33304.md b/md/CHEBI/04/CHEBI_33304.md index e4e048b9ed..27ea0a8305 100644 --- a/md/CHEBI/04/CHEBI_33304.md +++ b/md/CHEBI/04/CHEBI_33304.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/04/CHEBI_35604.md b/md/CHEBI/04/CHEBI_35604.md index edc508947d..b2e0474d3e 100644 --- a/md/CHEBI/04/CHEBI_35604.md +++ b/md/CHEBI/04/CHEBI_35604.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/04/CHEBI_60004.md b/md/CHEBI/04/CHEBI_60004.md index 762c8e09a4..04eaed7de7 100644 --- a/md/CHEBI/04/CHEBI_60004.md +++ b/md/CHEBI/04/CHEBI_60004.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/05/CHEBI_25805.md b/md/CHEBI/05/CHEBI_25805.md index c6d32966fb..f479192737 100644 --- a/md/CHEBI/05/CHEBI_25805.md +++ b/md/CHEBI/05/CHEBI_25805.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/06/CHEBI_22506.md b/md/CHEBI/06/CHEBI_22506.md index e290002109..bfaf8236ac 100644 --- a/md/CHEBI/06/CHEBI_22506.md +++ b/md/CHEBI/06/CHEBI_22506.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/06/CHEBI_23906.md b/md/CHEBI/06/CHEBI_23906.md index 9f0bad2ed1..ad0fdd3b8e 100644 --- a/md/CHEBI/06/CHEBI_23906.md +++ b/md/CHEBI/06/CHEBI_23906.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/06/CHEBI_25806.md b/md/CHEBI/06/CHEBI_25806.md index db3e71e6c7..c8701eee3c 100644 --- a/md/CHEBI/06/CHEBI_25806.md +++ b/md/CHEBI/06/CHEBI_25806.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/06/CHEBI_33306.md b/md/CHEBI/06/CHEBI_33306.md index 8919f676e4..54b7baee27 100644 --- a/md/CHEBI/06/CHEBI_33306.md +++ b/md/CHEBI/06/CHEBI_33306.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/06/CHEBI_35406.md b/md/CHEBI/06/CHEBI_35406.md index 8e996976f9..686795a76c 100644 --- a/md/CHEBI/06/CHEBI_35406.md +++ b/md/CHEBI/06/CHEBI_35406.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/07/CHEBI_27207.md b/md/CHEBI/07/CHEBI_27207.md index 73364e1805..6c4614c962 100644 --- a/md/CHEBI/07/CHEBI_27207.md +++ b/md/CHEBI/07/CHEBI_27207.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/08/CHEBI_29108.md b/md/CHEBI/08/CHEBI_29108.md index 649bcfdac8..7083285dd3 100644 --- a/md/CHEBI/08/CHEBI_29108.md +++ b/md/CHEBI/08/CHEBI_29108.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/08/CHEBI_33608.md b/md/CHEBI/08/CHEBI_33608.md index 254a287611..ea7815cab8 100644 --- a/md/CHEBI/08/CHEBI_33608.md +++ b/md/CHEBI/08/CHEBI_33608.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/08/CHEBI_33708.md b/md/CHEBI/08/CHEBI_33708.md index 1a1fd1102f..a2e73cb8d2 100644 --- a/md/CHEBI/08/CHEBI_33708.md +++ b/md/CHEBI/08/CHEBI_33708.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/08/CHEBI_64708.md b/md/CHEBI/08/CHEBI_64708.md index 4b99196f07..3afcb497e3 100644 --- a/md/CHEBI/08/CHEBI_64708.md +++ b/md/CHEBI/08/CHEBI_64708.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/09/CHEBI_41609.md b/md/CHEBI/09/CHEBI_41609.md index 7d7c7fdb11..0f14683091 100644 --- a/md/CHEBI/09/CHEBI_41609.md +++ b/md/CHEBI/09/CHEBI_41609.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/10/CHEBI_33710.md b/md/CHEBI/10/CHEBI_33710.md index 79862ebf6b..66b0f5b67e 100644 --- a/md/CHEBI/10/CHEBI_33710.md +++ b/md/CHEBI/10/CHEBI_33710.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/11/CHEBI_3311.md b/md/CHEBI/11/CHEBI_3311.md index e7f1682cc4..a844951ee5 100644 --- a/md/CHEBI/11/CHEBI_3311.md +++ b/md/CHEBI/11/CHEBI_3311.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/12/CHEBI_30412.md b/md/CHEBI/12/CHEBI_30412.md index 1852874cd3..f220271425 100644 --- a/md/CHEBI/12/CHEBI_30412.md +++ b/md/CHEBI/12/CHEBI_30412.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/12/CHEBI_65212.md b/md/CHEBI/12/CHEBI_65212.md index 0691e6a0e0..e16ff7cfd1 100644 --- a/md/CHEBI/12/CHEBI_65212.md +++ b/md/CHEBI/12/CHEBI_65212.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/13/CHEBI_22313.md b/md/CHEBI/13/CHEBI_22313.md index c91dcfd05f..14ade0d5b3 100644 --- a/md/CHEBI/13/CHEBI_22313.md +++ b/md/CHEBI/13/CHEBI_22313.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/13/CHEBI_24913.md b/md/CHEBI/13/CHEBI_24913.md index bc82d63c04..0a3435d37b 100644 --- a/md/CHEBI/13/CHEBI_24913.md +++ b/md/CHEBI/13/CHEBI_24913.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/13/CHEBI_25213.md b/md/CHEBI/13/CHEBI_25213.md index b4ed3e2a7a..5a05ebf715 100644 --- a/md/CHEBI/13/CHEBI_25213.md +++ b/md/CHEBI/13/CHEBI_25213.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/13/CHEBI_33513.md b/md/CHEBI/13/CHEBI_33513.md index bf1cc50ec8..4cb4a4d54a 100644 --- a/md/CHEBI/13/CHEBI_33513.md +++ b/md/CHEBI/13/CHEBI_33513.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/14/CHEBI_36914.md b/md/CHEBI/14/CHEBI_36914.md index 40bacfb3f8..7f47bf6724 100644 --- a/md/CHEBI/14/CHEBI_36914.md +++ b/md/CHEBI/14/CHEBI_36914.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/15/CHEBI_36915.md b/md/CHEBI/15/CHEBI_36915.md index ed409985f8..547915ee32 100644 --- a/md/CHEBI/15/CHEBI_36915.md +++ b/md/CHEBI/15/CHEBI_36915.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/16/CHEBI_23016.md b/md/CHEBI/16/CHEBI_23016.md index 6e1c8eb874..0b21add9ad 100644 --- a/md/CHEBI/16/CHEBI_23016.md +++ b/md/CHEBI/16/CHEBI_23016.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/16/CHEBI_36916.md b/md/CHEBI/16/CHEBI_36916.md index 8183eee75c..24f41cec26 100644 --- a/md/CHEBI/16/CHEBI_36916.md +++ b/md/CHEBI/16/CHEBI_36916.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/18/CHEBI_33318.md b/md/CHEBI/18/CHEBI_33318.md index b18b43128e..b22d0e36da 100644 --- a/md/CHEBI/18/CHEBI_33318.md +++ b/md/CHEBI/18/CHEBI_33318.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/21/CHEBI_22221.md b/md/CHEBI/21/CHEBI_22221.md index e692966e14..c205bbf727 100644 --- a/md/CHEBI/21/CHEBI_22221.md +++ b/md/CHEBI/21/CHEBI_22221.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/21/CHEBI_33521.md b/md/CHEBI/21/CHEBI_33521.md index fbdaf445f2..b8b8ba922f 100644 --- a/md/CHEBI/21/CHEBI_33521.md +++ b/md/CHEBI/21/CHEBI_33521.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/21/CHEBI_46721.md b/md/CHEBI/21/CHEBI_46721.md index afaf628782..1b6402dcdd 100644 --- a/md/CHEBI/21/CHEBI_46721.md +++ b/md/CHEBI/21/CHEBI_46721.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/22/CHEBI_37622.md b/md/CHEBI/22/CHEBI_37622.md index a036c116af..6523a26c3d 100644 --- a/md/CHEBI/22/CHEBI_37622.md +++ b/md/CHEBI/22/CHEBI_37622.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/23/CHEBI_39123.md b/md/CHEBI/23/CHEBI_39123.md index c8b82ef22d..1adb09bbd3 100644 --- a/md/CHEBI/23/CHEBI_39123.md +++ b/md/CHEBI/23/CHEBI_39123.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/23/CHEBI_46723.md b/md/CHEBI/23/CHEBI_46723.md index ecdd18c140..e1edf41ab4 100644 --- a/md/CHEBI/23/CHEBI_46723.md +++ b/md/CHEBI/23/CHEBI_46723.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/24/CHEBI_39124.md b/md/CHEBI/24/CHEBI_39124.md index c08effea5e..ddfc0fcdbd 100644 --- a/md/CHEBI/24/CHEBI_39124.md +++ b/md/CHEBI/24/CHEBI_39124.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/26/CHEBI_60926.md b/md/CHEBI/26/CHEBI_60926.md index 6648e11e51..13b2bd1cae 100644 --- a/md/CHEBI/26/CHEBI_60926.md +++ b/md/CHEBI/26/CHEBI_60926.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/29/CHEBI_17029.md b/md/CHEBI/29/CHEBI_17029.md index 8b5f1ec546..8cfdb35fdb 100644 --- a/md/CHEBI/29/CHEBI_17029.md +++ b/md/CHEBI/29/CHEBI_17029.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/31/CHEBI_24431.md b/md/CHEBI/31/CHEBI_24431.md index 77bbd6e965..08f460b6a5 100644 --- a/md/CHEBI/31/CHEBI_24431.md +++ b/md/CHEBI/31/CHEBI_24431.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/32/CHEBI_24632.md b/md/CHEBI/32/CHEBI_24632.md index 91100f6f17..1a4249c5d7 100644 --- a/md/CHEBI/32/CHEBI_24632.md +++ b/md/CHEBI/32/CHEBI_24632.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/33/CHEBI_24433.md b/md/CHEBI/33/CHEBI_24433.md index 8b4eceda03..fc251761be 100644 --- a/md/CHEBI/33/CHEBI_24433.md +++ b/md/CHEBI/33/CHEBI_24433.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/33/CHEBI_33233.md b/md/CHEBI/33/CHEBI_33233.md index 18c8b3c0d6..44511feec9 100644 --- a/md/CHEBI/33/CHEBI_33233.md +++ b/md/CHEBI/33/CHEBI_33233.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/35/CHEBI_24835.md b/md/CHEBI/35/CHEBI_24835.md index 467042b5a7..7e8a0a807b 100644 --- a/md/CHEBI/35/CHEBI_24835.md +++ b/md/CHEBI/35/CHEBI_24835.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/37/CHEBI_33837.md b/md/CHEBI/37/CHEBI_33837.md index 6baa523180..0bc81f3a1d 100644 --- a/md/CHEBI/37/CHEBI_33837.md +++ b/md/CHEBI/37/CHEBI_33837.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/37/CHEBI_49637.md b/md/CHEBI/37/CHEBI_49637.md index 0e06804905..7068af8c48 100644 --- a/md/CHEBI/37/CHEBI_49637.md +++ b/md/CHEBI/37/CHEBI_49637.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/38/CHEBI_21638.md b/md/CHEBI/38/CHEBI_21638.md index a2990f8a61..86f48c489e 100644 --- a/md/CHEBI/38/CHEBI_21638.md +++ b/md/CHEBI/38/CHEBI_21638.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/38/CHEBI_33238.md b/md/CHEBI/38/CHEBI_33238.md index 2625dcfc3c..36bae2c24f 100644 --- a/md/CHEBI/38/CHEBI_33238.md +++ b/md/CHEBI/38/CHEBI_33238.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/38/CHEBI_36338.md b/md/CHEBI/38/CHEBI_36338.md index e8fec00a0c..9cc56fd287 100644 --- a/md/CHEBI/38/CHEBI_36338.md +++ b/md/CHEBI/38/CHEBI_36338.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/38/CHEBI_37838.md b/md/CHEBI/38/CHEBI_37838.md index b6922c10cf..bdf412d7a4 100644 --- a/md/CHEBI/38/CHEBI_37838.md +++ b/md/CHEBI/38/CHEBI_37838.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/39/CHEBI_33839.md b/md/CHEBI/39/CHEBI_33839.md index 12ca3bb2ca..3c5bf27aea 100644 --- a/md/CHEBI/39/CHEBI_33839.md +++ b/md/CHEBI/39/CHEBI_33839.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/39/CHEBI_36339.md b/md/CHEBI/39/CHEBI_36339.md index b928d7e235..2ca5529725 100644 --- a/md/CHEBI/39/CHEBI_36339.md +++ b/md/CHEBI/39/CHEBI_36339.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/40/CHEBI_15440.md b/md/CHEBI/40/CHEBI_15440.md index d136cf2b17..7965e7a709 100644 --- a/md/CHEBI/40/CHEBI_15440.md +++ b/md/CHEBI/40/CHEBI_15440.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/40/CHEBI_36340.md b/md/CHEBI/40/CHEBI_36340.md index 8f39366ae2..248611416a 100644 --- a/md/CHEBI/40/CHEBI_36340.md +++ b/md/CHEBI/40/CHEBI_36340.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/40/CHEBI_60240.md b/md/CHEBI/40/CHEBI_60240.md index 622f0306f4..6559244566 100644 --- a/md/CHEBI/40/CHEBI_60240.md +++ b/md/CHEBI/40/CHEBI_60240.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/41/CHEBI_15841.md b/md/CHEBI/41/CHEBI_15841.md index fd7041259f..9fd92a04be 100644 --- a/md/CHEBI/41/CHEBI_15841.md +++ b/md/CHEBI/41/CHEBI_15841.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/41/CHEBI_16541.md b/md/CHEBI/41/CHEBI_16541.md index 569eeb4ed9..714609a59c 100644 --- a/md/CHEBI/41/CHEBI_16541.md +++ b/md/CHEBI/41/CHEBI_16541.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/41/CHEBI_25741.md b/md/CHEBI/41/CHEBI_25741.md index ffdf77d3bd..cf5008fef5 100644 --- a/md/CHEBI/41/CHEBI_25741.md +++ b/md/CHEBI/41/CHEBI_25741.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/41/CHEBI_64641.md b/md/CHEBI/41/CHEBI_64641.md index 9fa2eb8324..a9b848abbe 100644 --- a/md/CHEBI/41/CHEBI_64641.md +++ b/md/CHEBI/41/CHEBI_64641.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/42/CHEBI_36342.md b/md/CHEBI/42/CHEBI_36342.md index 4b1359754c..06a294ae04 100644 --- a/md/CHEBI/42/CHEBI_36342.md +++ b/md/CHEBI/42/CHEBI_36342.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/43/CHEBI_36343.md b/md/CHEBI/43/CHEBI_36343.md index 0565fb1627..c61c6ba1db 100644 --- a/md/CHEBI/43/CHEBI_36343.md +++ b/md/CHEBI/43/CHEBI_36343.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/43/CHEBI_51143.md b/md/CHEBI/43/CHEBI_51143.md index 5454117b34..9c0e721152 100644 --- a/md/CHEBI/43/CHEBI_51143.md +++ b/md/CHEBI/43/CHEBI_51143.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/44/CHEBI_36344.md b/md/CHEBI/44/CHEBI_36344.md index 7cd594f025..fe9d170b41 100644 --- a/md/CHEBI/44/CHEBI_36344.md +++ b/md/CHEBI/44/CHEBI_36344.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/45/CHEBI_10545.md b/md/CHEBI/45/CHEBI_10545.md index 98c337ac80..e6db0a4917 100644 --- a/md/CHEBI/45/CHEBI_10545.md +++ b/md/CHEBI/45/CHEBI_10545.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/45/CHEBI_33245.md b/md/CHEBI/45/CHEBI_33245.md index d84545fcb7..3c5314eb1f 100644 --- a/md/CHEBI/45/CHEBI_33245.md +++ b/md/CHEBI/45/CHEBI_33245.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/46/CHEBI_16646.md b/md/CHEBI/46/CHEBI_16646.md index 176aed2891..7871c40b7b 100644 --- a/md/CHEBI/46/CHEBI_16646.md +++ b/md/CHEBI/46/CHEBI_16646.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/46/CHEBI_18246.md b/md/CHEBI/46/CHEBI_18246.md index dfe261b84d..2f021a9fb8 100644 --- a/md/CHEBI/46/CHEBI_18246.md +++ b/md/CHEBI/46/CHEBI_18246.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/47/CHEBI_33247.md b/md/CHEBI/47/CHEBI_33247.md index b428046b28..47448a8fe2 100644 --- a/md/CHEBI/47/CHEBI_33247.md +++ b/md/CHEBI/47/CHEBI_33247.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/47/CHEBI_36347.md b/md/CHEBI/47/CHEBI_36347.md index d76962c1f0..490f987615 100644 --- a/md/CHEBI/47/CHEBI_36347.md +++ b/md/CHEBI/47/CHEBI_36347.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/47/CHEBI_50047.md b/md/CHEBI/47/CHEBI_50047.md index 219fc9d9bd..28067bd7fc 100644 --- a/md/CHEBI/47/CHEBI_50047.md +++ b/md/CHEBI/47/CHEBI_50047.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/50/CHEBI_33250.md b/md/CHEBI/50/CHEBI_33250.md index 333fae7c4b..fbcfe894c0 100644 --- a/md/CHEBI/50/CHEBI_33250.md +++ b/md/CHEBI/50/CHEBI_33250.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/52/CHEBI_33252.md b/md/CHEBI/52/CHEBI_33252.md index 7fad61af12..2670928919 100644 --- a/md/CHEBI/52/CHEBI_33252.md +++ b/md/CHEBI/52/CHEBI_33252.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/52/CHEBI_35352.md b/md/CHEBI/52/CHEBI_35352.md index 7ca1fdfc76..bda3e5856e 100644 --- a/md/CHEBI/52/CHEBI_35352.md +++ b/md/CHEBI/52/CHEBI_35352.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/53/CHEBI_33253.md b/md/CHEBI/53/CHEBI_33253.md index 1afbb8c40f..74bfa659e6 100644 --- a/md/CHEBI/53/CHEBI_33253.md +++ b/md/CHEBI/53/CHEBI_33253.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/54/CHEBI_18154.md b/md/CHEBI/54/CHEBI_18154.md index e744ac67a1..2e3078b856 100644 --- a/md/CHEBI/54/CHEBI_18154.md +++ b/md/CHEBI/54/CHEBI_18154.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/54/CHEBI_52254.md b/md/CHEBI/54/CHEBI_52254.md index 8b2c192e36..b1018a409d 100644 --- a/md/CHEBI/54/CHEBI_52254.md +++ b/md/CHEBI/54/CHEBI_52254.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/55/CHEBI_25555.md b/md/CHEBI/55/CHEBI_25555.md index 44f7ee8cb2..17943a31da 100644 --- a/md/CHEBI/55/CHEBI_25555.md +++ b/md/CHEBI/55/CHEBI_25555.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/55/CHEBI_35155.md b/md/CHEBI/55/CHEBI_35155.md index e777876730..8c4eacad7b 100644 --- a/md/CHEBI/55/CHEBI_35155.md +++ b/md/CHEBI/55/CHEBI_35155.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/55/CHEBI_52255.md b/md/CHEBI/55/CHEBI_52255.md index 41fd714ba6..5c0524b3df 100644 --- a/md/CHEBI/55/CHEBI_52255.md +++ b/md/CHEBI/55/CHEBI_52255.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/56/CHEBI_21656.md b/md/CHEBI/56/CHEBI_21656.md index c0b7487b11..d9d86e7dca 100644 --- a/md/CHEBI/56/CHEBI_21656.md +++ b/md/CHEBI/56/CHEBI_21656.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/56/CHEBI_33256.md b/md/CHEBI/56/CHEBI_33256.md index 0a5e87ce61..144e58dee4 100644 --- a/md/CHEBI/56/CHEBI_33256.md +++ b/md/CHEBI/56/CHEBI_33256.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/56/CHEBI_35156.md b/md/CHEBI/56/CHEBI_35156.md index d7ce78adfc..f43668f616 100644 --- a/md/CHEBI/56/CHEBI_35156.md +++ b/md/CHEBI/56/CHEBI_35156.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/57/CHEBI_36357.md b/md/CHEBI/57/CHEBI_36357.md index e2112cb4d1..98e002c7ec 100644 --- a/md/CHEBI/57/CHEBI_36357.md +++ b/md/CHEBI/57/CHEBI_36357.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/58/CHEBI_36358.md b/md/CHEBI/58/CHEBI_36358.md index d214281ec5..b66539b7ec 100644 --- a/md/CHEBI/58/CHEBI_36358.md +++ b/md/CHEBI/58/CHEBI_36358.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/59/CHEBI_18059.md b/md/CHEBI/59/CHEBI_18059.md index 862acbf296..4c6cf161d3 100644 --- a/md/CHEBI/59/CHEBI_18059.md +++ b/md/CHEBI/59/CHEBI_18059.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/59/CHEBI_33259.md b/md/CHEBI/59/CHEBI_33259.md index 4ceaf449e5..bbdcacdcf9 100644 --- a/md/CHEBI/59/CHEBI_33259.md +++ b/md/CHEBI/59/CHEBI_33259.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/59/CHEBI_33559.md b/md/CHEBI/59/CHEBI_33559.md index 7ca66cda65..4b76d96db7 100644 --- a/md/CHEBI/59/CHEBI_33559.md +++ b/md/CHEBI/59/CHEBI_33559.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/60/CHEBI_33560.md b/md/CHEBI/60/CHEBI_33560.md index 4f0d3a35ca..86b1819199 100644 --- a/md/CHEBI/60/CHEBI_33560.md +++ b/md/CHEBI/60/CHEBI_33560.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/60/CHEBI_50860.md b/md/CHEBI/60/CHEBI_50860.md index f1633b5b22..e24b25664f 100644 --- a/md/CHEBI/60/CHEBI_50860.md +++ b/md/CHEBI/60/CHEBI_50860.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/62/CHEBI_36962.md b/md/CHEBI/62/CHEBI_36962.md index 70213a1eb4..0e226d58b8 100644 --- a/md/CHEBI/62/CHEBI_36962.md +++ b/md/CHEBI/62/CHEBI_36962.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/62/CHEBI_46662.md b/md/CHEBI/62/CHEBI_46662.md index 45ff8660e1..0867eb58b3 100644 --- a/md/CHEBI/62/CHEBI_46662.md +++ b/md/CHEBI/62/CHEBI_46662.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/63/CHEBI_22563.md b/md/CHEBI/63/CHEBI_22563.md index 9e5bafb44b..ede0ab3e99 100644 --- a/md/CHEBI/63/CHEBI_22563.md +++ b/md/CHEBI/63/CHEBI_22563.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/63/CHEBI_28963.md b/md/CHEBI/63/CHEBI_28963.md index 81729db6a7..2e8074d755 100644 --- a/md/CHEBI/63/CHEBI_28963.md +++ b/md/CHEBI/63/CHEBI_28963.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/63/CHEBI_36963.md b/md/CHEBI/63/CHEBI_36963.md index ac5ddc1382..77426b538b 100644 --- a/md/CHEBI/63/CHEBI_36963.md +++ b/md/CHEBI/63/CHEBI_36963.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/63/CHEBI_37163.md b/md/CHEBI/63/CHEBI_37163.md index 000ae82ea2..9282b2ca18 100644 --- a/md/CHEBI/63/CHEBI_37163.md +++ b/md/CHEBI/63/CHEBI_37163.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/64/CHEBI_36364.md b/md/CHEBI/64/CHEBI_36364.md index 0a92d5d77b..893c0e97ab 100644 --- a/md/CHEBI/64/CHEBI_36364.md +++ b/md/CHEBI/64/CHEBI_36364.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/64/CHEBI_37164.md b/md/CHEBI/64/CHEBI_37164.md index 94611706b7..afda6196e8 100644 --- a/md/CHEBI/64/CHEBI_37164.md +++ b/md/CHEBI/64/CHEBI_37164.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/66/CHEBI_24866.md b/md/CHEBI/66/CHEBI_24866.md index 60e04f63ae..5b422bf6e9 100644 --- a/md/CHEBI/66/CHEBI_24866.md +++ b/md/CHEBI/66/CHEBI_24866.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/67/CHEBI_23367.md b/md/CHEBI/67/CHEBI_23367.md index d918deb83c..23f403e46a 100644 --- a/md/CHEBI/67/CHEBI_23367.md +++ b/md/CHEBI/67/CHEBI_23367.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/67/CHEBI_24867.md b/md/CHEBI/67/CHEBI_24867.md index 2b2a8bf43b..9d7c58935d 100644 --- a/md/CHEBI/67/CHEBI_24867.md +++ b/md/CHEBI/67/CHEBI_24867.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/70/CHEBI_16670.md b/md/CHEBI/70/CHEBI_16670.md index 1b5199be74..7f6acddaf1 100644 --- a/md/CHEBI/70/CHEBI_16670.md +++ b/md/CHEBI/70/CHEBI_16670.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/70/CHEBI_24870.md b/md/CHEBI/70/CHEBI_24870.md index f3c6e2f25d..cf5267b141 100644 --- a/md/CHEBI/70/CHEBI_24870.md +++ b/md/CHEBI/70/CHEBI_24870.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/71/CHEBI_24271.md b/md/CHEBI/71/CHEBI_24271.md index 18a002a1db..ff7c0fcace 100644 --- a/md/CHEBI/71/CHEBI_24271.md +++ b/md/CHEBI/71/CHEBI_24271.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/73/CHEBI_33273.md b/md/CHEBI/73/CHEBI_33273.md index 51f83c75fa..ec3ec9e90f 100644 --- a/md/CHEBI/73/CHEBI_33273.md +++ b/md/CHEBI/73/CHEBI_33273.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/74/CHEBI_33674.md b/md/CHEBI/74/CHEBI_33674.md index 746c79b24c..75eca7529d 100644 --- a/md/CHEBI/74/CHEBI_33674.md +++ b/md/CHEBI/74/CHEBI_33674.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/75/CHEBI_33675.md b/md/CHEBI/75/CHEBI_33675.md index bf40404032..f82d5ed995 100644 --- a/md/CHEBI/75/CHEBI_33675.md +++ b/md/CHEBI/75/CHEBI_33675.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/75/CHEBI_37175.md b/md/CHEBI/75/CHEBI_37175.md index 0f5815252f..db2c6a3f61 100644 --- a/md/CHEBI/75/CHEBI_37175.md +++ b/md/CHEBI/75/CHEBI_37175.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/77/CHEBI_37577.md b/md/CHEBI/77/CHEBI_37577.md index 44093fa200..5fd7a4a497 100644 --- a/md/CHEBI/77/CHEBI_37577.md +++ b/md/CHEBI/77/CHEBI_37577.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/79/CHEBI_33579.md b/md/CHEBI/79/CHEBI_33579.md index 44dff7acc4..601c8974a8 100644 --- a/md/CHEBI/79/CHEBI_33579.md +++ b/md/CHEBI/79/CHEBI_33579.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/80/CHEBI_36080.md b/md/CHEBI/80/CHEBI_36080.md index 9687e33e8a..0d0625e49c 100644 --- a/md/CHEBI/80/CHEBI_36080.md +++ b/md/CHEBI/80/CHEBI_36080.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/82/CHEBI_33582.md b/md/CHEBI/82/CHEBI_33582.md index d86720accc..5c310b3777 100644 --- a/md/CHEBI/82/CHEBI_33582.md +++ b/md/CHEBI/82/CHEBI_33582.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/84/CHEBI_22984.md b/md/CHEBI/84/CHEBI_22984.md index 4a233aca9e..fa060621cb 100644 --- a/md/CHEBI/84/CHEBI_22984.md +++ b/md/CHEBI/84/CHEBI_22984.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/85/CHEBI_18085.md b/md/CHEBI/85/CHEBI_18085.md index 77e9d8fabf..eac2255f1e 100644 --- a/md/CHEBI/85/CHEBI_18085.md +++ b/md/CHEBI/85/CHEBI_18085.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/85/CHEBI_22985.md b/md/CHEBI/85/CHEBI_22985.md index 3819e61eab..730cc8b5fd 100644 --- a/md/CHEBI/85/CHEBI_22985.md +++ b/md/CHEBI/85/CHEBI_22985.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/85/CHEBI_25585.md b/md/CHEBI/85/CHEBI_25585.md index c6f0db207e..dbd73bf090 100644 --- a/md/CHEBI/85/CHEBI_25585.md +++ b/md/CHEBI/85/CHEBI_25585.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/85/CHEBI_33285.md b/md/CHEBI/85/CHEBI_33285.md index 19be838e91..76d840dfe8 100644 --- a/md/CHEBI/85/CHEBI_33285.md +++ b/md/CHEBI/85/CHEBI_33285.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/86/CHEBI_24586.md b/md/CHEBI/86/CHEBI_24586.md index 40e63ce4f9..f2ea9799ba 100644 --- a/md/CHEBI/86/CHEBI_24586.md +++ b/md/CHEBI/86/CHEBI_24586.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/86/CHEBI_35186.md b/md/CHEBI/86/CHEBI_35186.md index 829f8a8388..409f4e176a 100644 --- a/md/CHEBI/86/CHEBI_35186.md +++ b/md/CHEBI/86/CHEBI_35186.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/88/CHEBI_32988.md b/md/CHEBI/88/CHEBI_32988.md index 9695c4a31b..80542f8f90 100644 --- a/md/CHEBI/88/CHEBI_32988.md +++ b/md/CHEBI/88/CHEBI_32988.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/89/CHEBI_17089.md b/md/CHEBI/89/CHEBI_17089.md index f7b691e0a9..e8bb166822 100644 --- a/md/CHEBI/89/CHEBI_17089.md +++ b/md/CHEBI/89/CHEBI_17089.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/91/CHEBI_35191.md b/md/CHEBI/91/CHEBI_35191.md index b120ed8e02..3d13e89278 100644 --- a/md/CHEBI/91/CHEBI_35191.md +++ b/md/CHEBI/91/CHEBI_35191.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/92/CHEBI_33692.md b/md/CHEBI/92/CHEBI_33692.md index 59c683bc33..b4161f918a 100644 --- a/md/CHEBI/92/CHEBI_33692.md +++ b/md/CHEBI/92/CHEBI_33692.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/93/CHEBI_28793.md b/md/CHEBI/93/CHEBI_28793.md index 0903dbbecf..7713835a52 100644 --- a/md/CHEBI/93/CHEBI_28793.md +++ b/md/CHEBI/93/CHEBI_28793.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/94/CHEBI_27594.md b/md/CHEBI/94/CHEBI_27594.md index 75c538c0d8..668646bdce 100644 --- a/md/CHEBI/94/CHEBI_27594.md +++ b/md/CHEBI/94/CHEBI_27594.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/94/CHEBI_33694.md b/md/CHEBI/94/CHEBI_33694.md index 96d35694af..b5b3a13dce 100644 --- a/md/CHEBI/94/CHEBI_33694.md +++ b/md/CHEBI/94/CHEBI_33694.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/95/CHEBI_33695.md b/md/CHEBI/95/CHEBI_33695.md index d39cc47571..a089699c50 100644 --- a/md/CHEBI/95/CHEBI_33695.md +++ b/md/CHEBI/95/CHEBI_33695.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/95/CHEBI_37395.md b/md/CHEBI/95/CHEBI_37395.md index 0f0183be9e..68f6982721 100644 --- a/md/CHEBI/95/CHEBI_37395.md +++ b/md/CHEBI/95/CHEBI_37395.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/96/CHEBI_25696.md b/md/CHEBI/96/CHEBI_25696.md index db42a27662..6055ec2d1a 100644 --- a/md/CHEBI/96/CHEBI_25696.md +++ b/md/CHEBI/96/CHEBI_25696.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/99/CHEBI_25699.md b/md/CHEBI/99/CHEBI_25699.md index 78dd862273..d3ce16fbfb 100644 --- a/md/CHEBI/99/CHEBI_25699.md +++ b/md/CHEBI/99/CHEBI_25699.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/99/CHEBI_33299.md b/md/CHEBI/99/CHEBI_33299.md index 5b32f49d00..c1dfc7486e 100644 --- a/md/CHEBI/99/CHEBI_33299.md +++ b/md/CHEBI/99/CHEBI_33299.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/99/CHEBI_59999.md b/md/CHEBI/99/CHEBI_59999.md index 7d5ab31f09..15dcfb7856 100644 --- a/md/CHEBI/99/CHEBI_59999.md +++ b/md/CHEBI/99/CHEBI_59999.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CHEBI/99/CHEBI_63299.md b/md/CHEBI/99/CHEBI_63299.md index 892b8c590d..f6ed928b63 100644 --- a/md/CHEBI/99/CHEBI_63299.md +++ b/md/CHEBI/99/CHEBI_63299.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000000.md b/md/CL/00/CL_0000000.md index 930627f1ae..fed5ca7f09 100644 --- a/md/CL/00/CL_0000000.md +++ b/md/CL/00/CL_0000000.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000100.md b/md/CL/00/CL_0000100.md index f51f950758..d3845c8a4c 100644 --- a/md/CL/00/CL_0000100.md +++ b/md/CL/00/CL_0000100.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000200.md b/md/CL/00/CL_0000200.md index 3977594433..0e330a1afc 100644 --- a/md/CL/00/CL_0000200.md +++ b/md/CL/00/CL_0000200.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000300.md b/md/CL/00/CL_0000300.md index 5a5a43370b..ba50349770 100644 --- a/md/CL/00/CL_0000300.md +++ b/md/CL/00/CL_0000300.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000500.md b/md/CL/00/CL_0000500.md index 7a07009d69..67023ee6a5 100644 --- a/md/CL/00/CL_0000500.md +++ b/md/CL/00/CL_0000500.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000600.md b/md/CL/00/CL_0000600.md index 288560f81a..e4a2585ba4 100644 --- a/md/CL/00/CL_0000600.md +++ b/md/CL/00/CL_0000600.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000700.md b/md/CL/00/CL_0000700.md index 28f503ae4c..739299048b 100644 --- a/md/CL/00/CL_0000700.md +++ b/md/CL/00/CL_0000700.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000800.md b/md/CL/00/CL_0000800.md index d2e14cc035..82f289c924 100644 --- a/md/CL/00/CL_0000800.md +++ b/md/CL/00/CL_0000800.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0000900.md b/md/CL/00/CL_0000900.md index 27c4a18c0a..415909e835 100644 --- a/md/CL/00/CL_0000900.md +++ b/md/CL/00/CL_0000900.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0001000.md b/md/CL/00/CL_0001000.md index 92bedba21a..01f6153060 100644 --- a/md/CL/00/CL_0001000.md +++ b/md/CL/00/CL_0001000.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002000.md b/md/CL/00/CL_0002000.md index 5202274b3a..b0a47bf1ed 100644 --- a/md/CL/00/CL_0002000.md +++ b/md/CL/00/CL_0002000.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002100.md b/md/CL/00/CL_0002100.md index 03e54fd874..09a8ada4c2 100644 --- a/md/CL/00/CL_0002100.md +++ b/md/CL/00/CL_0002100.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002200.md b/md/CL/00/CL_0002200.md index 3c8df021e6..464ec972ae 100644 --- a/md/CL/00/CL_0002200.md +++ b/md/CL/00/CL_0002200.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002300.md b/md/CL/00/CL_0002300.md index 10d06bf01b..7c18672069 100644 --- a/md/CL/00/CL_0002300.md +++ b/md/CL/00/CL_0002300.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002400.md b/md/CL/00/CL_0002400.md index c186d2c30e..49cc3b4fe0 100644 --- a/md/CL/00/CL_0002400.md +++ b/md/CL/00/CL_0002400.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002500.md b/md/CL/00/CL_0002500.md index 6be8c11401..237c1beab3 100644 --- a/md/CL/00/CL_0002500.md +++ b/md/CL/00/CL_0002500.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0002600.md b/md/CL/00/CL_0002600.md index 7bae8a97b1..f414daf170 100644 --- a/md/CL/00/CL_0002600.md +++ b/md/CL/00/CL_0002600.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0005000.md b/md/CL/00/CL_0005000.md index 6afa327de2..ba5681ae5e 100644 --- a/md/CL/00/CL_0005000.md +++ b/md/CL/00/CL_0005000.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0007000.md b/md/CL/00/CL_0007000.md index ebe848efdb..6cab851a72 100644 --- a/md/CL/00/CL_0007000.md +++ b/md/CL/00/CL_0007000.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0009000.md b/md/CL/00/CL_0009000.md index 683b7b2468..89ef1f1742 100644 --- a/md/CL/00/CL_0009000.md +++ b/md/CL/00/CL_0009000.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0011000.md b/md/CL/00/CL_0011000.md index 57aaa47304..f6852ec454 100644 --- a/md/CL/00/CL_0011000.md +++ b/md/CL/00/CL_0011000.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0011100.md b/md/CL/00/CL_0011100.md index dc76a76769..58c5d6b047 100644 --- a/md/CL/00/CL_0011100.md +++ b/md/CL/00/CL_0011100.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0012000.md b/md/CL/00/CL_0012000.md index 5d7cf13a93..6458d96b88 100644 --- a/md/CL/00/CL_0012000.md +++ b/md/CL/00/CL_0012000.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0013000.md b/md/CL/00/CL_0013000.md index 5743db200e..06f75a8ff4 100644 --- a/md/CL/00/CL_0013000.md +++ b/md/CL/00/CL_0013000.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_0015000.md b/md/CL/00/CL_0015000.md index 8e5684adbc..d49481dd3c 100644 --- a/md/CL/00/CL_0015000.md +++ b/md/CL/00/CL_0015000.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_1000300.md b/md/CL/00/CL_1000300.md index efdf71241b..f64e49c9bf 100644 --- a/md/CL/00/CL_1000300.md +++ b/md/CL/00/CL_1000300.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_1000500.md b/md/CL/00/CL_1000500.md index d0f79b321c..30b2c98f62 100644 --- a/md/CL/00/CL_1000500.md +++ b/md/CL/00/CL_1000500.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_1000600.md b/md/CL/00/CL_1000600.md index 0254c2a19f..ff69eb2405 100644 --- a/md/CL/00/CL_1000600.md +++ b/md/CL/00/CL_1000600.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/00/CL_1001100.md b/md/CL/00/CL_1001100.md index f6ae695e9f..93bd2caf10 100644 --- a/md/CL/00/CL_1001100.md +++ b/md/CL/00/CL_1001100.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000001.md b/md/CL/01/CL_0000001.md index d096671497..835891a718 100644 --- a/md/CL/01/CL_0000001.md +++ b/md/CL/01/CL_0000001.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000101.md b/md/CL/01/CL_0000101.md index 59c1c433ec..4655822fc7 100644 --- a/md/CL/01/CL_0000101.md +++ b/md/CL/01/CL_0000101.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000301.md b/md/CL/01/CL_0000301.md index 9f4c13e908..a7029d2983 100644 --- a/md/CL/01/CL_0000301.md +++ b/md/CL/01/CL_0000301.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000401.md b/md/CL/01/CL_0000401.md index e206816ba2..343b721582 100644 --- a/md/CL/01/CL_0000401.md +++ b/md/CL/01/CL_0000401.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000501.md b/md/CL/01/CL_0000501.md index 3765bf60fe..422ce9a7f3 100644 --- a/md/CL/01/CL_0000501.md +++ b/md/CL/01/CL_0000501.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000601.md b/md/CL/01/CL_0000601.md index 0071283ba0..b51a3e8e67 100644 --- a/md/CL/01/CL_0000601.md +++ b/md/CL/01/CL_0000601.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000701.md b/md/CL/01/CL_0000701.md index bb9673afcd..954cc2ad79 100644 --- a/md/CL/01/CL_0000701.md +++ b/md/CL/01/CL_0000701.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000801.md b/md/CL/01/CL_0000801.md index 81d8dd9c99..b772d5ea9b 100644 --- a/md/CL/01/CL_0000801.md +++ b/md/CL/01/CL_0000801.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0000901.md b/md/CL/01/CL_0000901.md index 90644fd06e..f94658b9e2 100644 --- a/md/CL/01/CL_0000901.md +++ b/md/CL/01/CL_0000901.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0001001.md b/md/CL/01/CL_0001001.md index 957f14f6ff..2cca60a126 100644 --- a/md/CL/01/CL_0001001.md +++ b/md/CL/01/CL_0001001.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002001.md b/md/CL/01/CL_0002001.md index 903e3e2b11..c4876a6059 100644 --- a/md/CL/01/CL_0002001.md +++ b/md/CL/01/CL_0002001.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002101.md b/md/CL/01/CL_0002101.md index d09e112c7f..4f9adf1480 100644 --- a/md/CL/01/CL_0002101.md +++ b/md/CL/01/CL_0002101.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002201.md b/md/CL/01/CL_0002201.md index b5fda2c416..774fb812d9 100644 --- a/md/CL/01/CL_0002201.md +++ b/md/CL/01/CL_0002201.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002301.md b/md/CL/01/CL_0002301.md index dbc8b1b655..c647f9d8d5 100644 --- a/md/CL/01/CL_0002301.md +++ b/md/CL/01/CL_0002301.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002401.md b/md/CL/01/CL_0002401.md index aa5b0549c2..d30d9eab6d 100644 --- a/md/CL/01/CL_0002401.md +++ b/md/CL/01/CL_0002401.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002501.md b/md/CL/01/CL_0002501.md index 0b8278d8b9..52ee5a5eae 100644 --- a/md/CL/01/CL_0002501.md +++ b/md/CL/01/CL_0002501.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0002601.md b/md/CL/01/CL_0002601.md index 8a0672b260..c090ec55d6 100644 --- a/md/CL/01/CL_0002601.md +++ b/md/CL/01/CL_0002601.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0005001.md b/md/CL/01/CL_0005001.md index 3473f6ec3b..61d06bb9ba 100644 --- a/md/CL/01/CL_0005001.md +++ b/md/CL/01/CL_0005001.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0007001.md b/md/CL/01/CL_0007001.md index d0080f3959..dc91174554 100644 --- a/md/CL/01/CL_0007001.md +++ b/md/CL/01/CL_0007001.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0009001.md b/md/CL/01/CL_0009001.md index c10929a021..c267d08d37 100644 --- a/md/CL/01/CL_0009001.md +++ b/md/CL/01/CL_0009001.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0010001.md b/md/CL/01/CL_0010001.md index 853566fa4e..d34dc2b2f4 100644 --- a/md/CL/01/CL_0010001.md +++ b/md/CL/01/CL_0010001.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0011001.md b/md/CL/01/CL_0011001.md index 5005d90908..2bab5fe973 100644 --- a/md/CL/01/CL_0011001.md +++ b/md/CL/01/CL_0011001.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0011101.md b/md/CL/01/CL_0011101.md index 7211796c2e..53178ff38e 100644 --- a/md/CL/01/CL_0011101.md +++ b/md/CL/01/CL_0011101.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_0012001.md b/md/CL/01/CL_0012001.md index 9aa3a0a77d..a909f87127 100644 --- a/md/CL/01/CL_0012001.md +++ b/md/CL/01/CL_0012001.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_1000301.md b/md/CL/01/CL_1000301.md index 34370e8531..2a22fde234 100644 --- a/md/CL/01/CL_1000301.md +++ b/md/CL/01/CL_1000301.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_1000601.md b/md/CL/01/CL_1000601.md index 6c8d63bf46..7f02b7271a 100644 --- a/md/CL/01/CL_1000601.md +++ b/md/CL/01/CL_1000601.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/01/CL_1001601.md b/md/CL/01/CL_1001601.md index 81232b2f3d..b8e3c4bfc8 100644 --- a/md/CL/01/CL_1001601.md +++ b/md/CL/01/CL_1001601.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000002.md b/md/CL/02/CL_0000002.md index 4c49d450fa..5da2a7a6b9 100644 --- a/md/CL/02/CL_0000002.md +++ b/md/CL/02/CL_0000002.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000102.md b/md/CL/02/CL_0000102.md index 9645d3f5c6..390badaa11 100644 --- a/md/CL/02/CL_0000102.md +++ b/md/CL/02/CL_0000102.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000202.md b/md/CL/02/CL_0000202.md index d8d1f3dfe0..091d60f2e2 100644 --- a/md/CL/02/CL_0000202.md +++ b/md/CL/02/CL_0000202.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000402.md b/md/CL/02/CL_0000402.md index b95b31d895..bf0423ebb1 100644 --- a/md/CL/02/CL_0000402.md +++ b/md/CL/02/CL_0000402.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000502.md b/md/CL/02/CL_0000502.md index aa818dc7ea..d111787db5 100644 --- a/md/CL/02/CL_0000502.md +++ b/md/CL/02/CL_0000502.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000602.md b/md/CL/02/CL_0000602.md index 0b94f24b02..faf6c6eb9b 100644 --- a/md/CL/02/CL_0000602.md +++ b/md/CL/02/CL_0000602.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000702.md b/md/CL/02/CL_0000702.md index 3794caf8c3..5ae8dc06a4 100644 --- a/md/CL/02/CL_0000702.md +++ b/md/CL/02/CL_0000702.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000802.md b/md/CL/02/CL_0000802.md index 2d0e0369c8..06f40b9ab2 100644 --- a/md/CL/02/CL_0000802.md +++ b/md/CL/02/CL_0000802.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0000902.md b/md/CL/02/CL_0000902.md index 269d0fdf8c..3e4e2bb5d8 100644 --- a/md/CL/02/CL_0000902.md +++ b/md/CL/02/CL_0000902.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0001002.md b/md/CL/02/CL_0001002.md index 4db651ebb6..057938ae43 100644 --- a/md/CL/02/CL_0001002.md +++ b/md/CL/02/CL_0001002.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002002.md b/md/CL/02/CL_0002002.md index bbd57368d8..788bfaf611 100644 --- a/md/CL/02/CL_0002002.md +++ b/md/CL/02/CL_0002002.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002102.md b/md/CL/02/CL_0002102.md index 87dbf810ae..6bbc4337e3 100644 --- a/md/CL/02/CL_0002102.md +++ b/md/CL/02/CL_0002102.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002202.md b/md/CL/02/CL_0002202.md index aa27c5213d..a600bc6f5a 100644 --- a/md/CL/02/CL_0002202.md +++ b/md/CL/02/CL_0002202.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002302.md b/md/CL/02/CL_0002302.md index ac928680d7..a616c59f58 100644 --- a/md/CL/02/CL_0002302.md +++ b/md/CL/02/CL_0002302.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002402.md b/md/CL/02/CL_0002402.md index fe030ea48e..3d4f211f15 100644 --- a/md/CL/02/CL_0002402.md +++ b/md/CL/02/CL_0002402.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002502.md b/md/CL/02/CL_0002502.md index ba40b6f5b7..b8d8316c73 100644 --- a/md/CL/02/CL_0002502.md +++ b/md/CL/02/CL_0002502.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0002602.md b/md/CL/02/CL_0002602.md index f1e10aa1dd..687c62fb38 100644 --- a/md/CL/02/CL_0002602.md +++ b/md/CL/02/CL_0002602.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0005002.md b/md/CL/02/CL_0005002.md index a198ddd851..fb6eed7e84 100644 --- a/md/CL/02/CL_0005002.md +++ b/md/CL/02/CL_0005002.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0007002.md b/md/CL/02/CL_0007002.md index 9a59f61b54..68b790f317 100644 --- a/md/CL/02/CL_0007002.md +++ b/md/CL/02/CL_0007002.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0008002.md b/md/CL/02/CL_0008002.md index 48a60040bf..c57a8d8073 100644 --- a/md/CL/02/CL_0008002.md +++ b/md/CL/02/CL_0008002.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0009002.md b/md/CL/02/CL_0009002.md index f5de3bc5e0..9ecba71743 100644 --- a/md/CL/02/CL_0009002.md +++ b/md/CL/02/CL_0009002.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0010002.md b/md/CL/02/CL_0010002.md index 25214a2842..c6e025ef10 100644 --- a/md/CL/02/CL_0010002.md +++ b/md/CL/02/CL_0010002.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0011002.md b/md/CL/02/CL_0011002.md index bf193ab994..7b401fb729 100644 --- a/md/CL/02/CL_0011002.md +++ b/md/CL/02/CL_0011002.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_0011102.md b/md/CL/02/CL_0011102.md index b66a20d467..a3928ad049 100644 --- a/md/CL/02/CL_0011102.md +++ b/md/CL/02/CL_0011102.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_1000302.md b/md/CL/02/CL_1000302.md index 9feed3f9d1..c9abfb4dc3 100644 --- a/md/CL/02/CL_1000302.md +++ b/md/CL/02/CL_1000302.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_1000702.md b/md/CL/02/CL_1000702.md index 35ed2eae06..b154ea77d6 100644 --- a/md/CL/02/CL_1000702.md +++ b/md/CL/02/CL_1000702.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_1001502.md b/md/CL/02/CL_1001502.md index a2a58a9728..87b88dbe16 100644 --- a/md/CL/02/CL_1001502.md +++ b/md/CL/02/CL_1001502.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/02/CL_1001602.md b/md/CL/02/CL_1001602.md index e637eaa866..d904698ccc 100644 --- a/md/CL/02/CL_1001602.md +++ b/md/CL/02/CL_1001602.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000003.md b/md/CL/03/CL_0000003.md index f825d99727..8f87ce0df0 100644 --- a/md/CL/03/CL_0000003.md +++ b/md/CL/03/CL_0000003.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000103.md b/md/CL/03/CL_0000103.md index fe4c954c38..4f078008ca 100644 --- a/md/CL/03/CL_0000103.md +++ b/md/CL/03/CL_0000103.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000203.md b/md/CL/03/CL_0000203.md index 3bfff3c5c2..e97af01c58 100644 --- a/md/CL/03/CL_0000203.md +++ b/md/CL/03/CL_0000203.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000503.md b/md/CL/03/CL_0000503.md index 5cc03e0fd7..71ab6b7ba4 100644 --- a/md/CL/03/CL_0000503.md +++ b/md/CL/03/CL_0000503.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000603.md b/md/CL/03/CL_0000603.md index 03dc955a01..04d4de15f3 100644 --- a/md/CL/03/CL_0000603.md +++ b/md/CL/03/CL_0000603.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000703.md b/md/CL/03/CL_0000703.md index 834900b27d..15605260e1 100644 --- a/md/CL/03/CL_0000703.md +++ b/md/CL/03/CL_0000703.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000803.md b/md/CL/03/CL_0000803.md index dd810056bf..736f9577ee 100644 --- a/md/CL/03/CL_0000803.md +++ b/md/CL/03/CL_0000803.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0000903.md b/md/CL/03/CL_0000903.md index 791ae3c911..da37364383 100644 --- a/md/CL/03/CL_0000903.md +++ b/md/CL/03/CL_0000903.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0001003.md b/md/CL/03/CL_0001003.md index a298dd8d52..45e8fa2686 100644 --- a/md/CL/03/CL_0001003.md +++ b/md/CL/03/CL_0001003.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002003.md b/md/CL/03/CL_0002003.md index 00d0208071..bbfe91e960 100644 --- a/md/CL/03/CL_0002003.md +++ b/md/CL/03/CL_0002003.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002103.md b/md/CL/03/CL_0002103.md index 56665499b9..b4e544b0b8 100644 --- a/md/CL/03/CL_0002103.md +++ b/md/CL/03/CL_0002103.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002203.md b/md/CL/03/CL_0002203.md index 28e6542073..739e2c4ff9 100644 --- a/md/CL/03/CL_0002203.md +++ b/md/CL/03/CL_0002203.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002303.md b/md/CL/03/CL_0002303.md index f6dc7f16f3..f6beb85f4c 100644 --- a/md/CL/03/CL_0002303.md +++ b/md/CL/03/CL_0002303.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002403.md b/md/CL/03/CL_0002403.md index b395efd559..53ed47962d 100644 --- a/md/CL/03/CL_0002403.md +++ b/md/CL/03/CL_0002403.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002503.md b/md/CL/03/CL_0002503.md index 9a43e1247d..3277591fff 100644 --- a/md/CL/03/CL_0002503.md +++ b/md/CL/03/CL_0002503.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0002603.md b/md/CL/03/CL_0002603.md index cf8547960f..193d3b0462 100644 --- a/md/CL/03/CL_0002603.md +++ b/md/CL/03/CL_0002603.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0005003.md b/md/CL/03/CL_0005003.md index c3f6d6b24d..95bfd91b14 100644 --- a/md/CL/03/CL_0005003.md +++ b/md/CL/03/CL_0005003.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0007003.md b/md/CL/03/CL_0007003.md index a0c0d05243..c9e29e3800 100644 --- a/md/CL/03/CL_0007003.md +++ b/md/CL/03/CL_0007003.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0008003.md b/md/CL/03/CL_0008003.md index fd47a6be68..f80159a178 100644 --- a/md/CL/03/CL_0008003.md +++ b/md/CL/03/CL_0008003.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0009003.md b/md/CL/03/CL_0009003.md index e8790c6153..407b519ea2 100644 --- a/md/CL/03/CL_0009003.md +++ b/md/CL/03/CL_0009003.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0010003.md b/md/CL/03/CL_0010003.md index 6f1fcd77c1..23134c7989 100644 --- a/md/CL/03/CL_0010003.md +++ b/md/CL/03/CL_0010003.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0011003.md b/md/CL/03/CL_0011003.md index a05acb3788..03a513d8dd 100644 --- a/md/CL/03/CL_0011003.md +++ b/md/CL/03/CL_0011003.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_0011103.md b/md/CL/03/CL_0011103.md index fd794aa7ba..a0396a3723 100644 --- a/md/CL/03/CL_0011103.md +++ b/md/CL/03/CL_0011103.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_1000303.md b/md/CL/03/CL_1000303.md index 5204ef98fb..33e6a0d058 100644 --- a/md/CL/03/CL_1000303.md +++ b/md/CL/03/CL_1000303.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_1000703.md b/md/CL/03/CL_1000703.md index cfeb670951..66e784251c 100644 --- a/md/CL/03/CL_1000703.md +++ b/md/CL/03/CL_1000703.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_1000803.md b/md/CL/03/CL_1000803.md index f8619e547c..4468291967 100644 --- a/md/CL/03/CL_1000803.md +++ b/md/CL/03/CL_1000803.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_1001503.md b/md/CL/03/CL_1001503.md index 141619dea7..07e13db72a 100644 --- a/md/CL/03/CL_1001503.md +++ b/md/CL/03/CL_1001503.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/03/CL_1001603.md b/md/CL/03/CL_1001603.md index fd1fc9a8aa..4ee32e8bb4 100644 --- a/md/CL/03/CL_1001603.md +++ b/md/CL/03/CL_1001603.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000104.md b/md/CL/04/CL_0000104.md index 5f17df9aa0..88444f5112 100644 --- a/md/CL/04/CL_0000104.md +++ b/md/CL/04/CL_0000104.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000204.md b/md/CL/04/CL_0000204.md index 48215ce112..6f63b905ac 100644 --- a/md/CL/04/CL_0000204.md +++ b/md/CL/04/CL_0000204.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000404.md b/md/CL/04/CL_0000404.md index 5748c41085..94221cd9e9 100644 --- a/md/CL/04/CL_0000404.md +++ b/md/CL/04/CL_0000404.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000504.md b/md/CL/04/CL_0000504.md index fbd8686669..797abbedff 100644 --- a/md/CL/04/CL_0000504.md +++ b/md/CL/04/CL_0000504.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000604.md b/md/CL/04/CL_0000604.md index 6b362dd6ee..79f004b09f 100644 --- a/md/CL/04/CL_0000604.md +++ b/md/CL/04/CL_0000604.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000704.md b/md/CL/04/CL_0000704.md index 2fea8dbfad..f1f2bfab66 100644 --- a/md/CL/04/CL_0000704.md +++ b/md/CL/04/CL_0000704.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0000904.md b/md/CL/04/CL_0000904.md index 1b05084c45..27aa45ceb0 100644 --- a/md/CL/04/CL_0000904.md +++ b/md/CL/04/CL_0000904.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0001004.md b/md/CL/04/CL_0001004.md index ae8df6b99e..4bf2b1ecf6 100644 --- a/md/CL/04/CL_0001004.md +++ b/md/CL/04/CL_0001004.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002004.md b/md/CL/04/CL_0002004.md index cd61d1b5b8..b3cb72ea7a 100644 --- a/md/CL/04/CL_0002004.md +++ b/md/CL/04/CL_0002004.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002104.md b/md/CL/04/CL_0002104.md index e35c90c778..9fc93a9915 100644 --- a/md/CL/04/CL_0002104.md +++ b/md/CL/04/CL_0002104.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002204.md b/md/CL/04/CL_0002204.md index b92d0ad36a..133b21da94 100644 --- a/md/CL/04/CL_0002204.md +++ b/md/CL/04/CL_0002204.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002304.md b/md/CL/04/CL_0002304.md index 310928e344..f21dd9d2cd 100644 --- a/md/CL/04/CL_0002304.md +++ b/md/CL/04/CL_0002304.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002404.md b/md/CL/04/CL_0002404.md index ed6f0eadd8..0b09f0d873 100644 --- a/md/CL/04/CL_0002404.md +++ b/md/CL/04/CL_0002404.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002504.md b/md/CL/04/CL_0002504.md index c3367cea60..f886aa5809 100644 --- a/md/CL/04/CL_0002504.md +++ b/md/CL/04/CL_0002504.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0002604.md b/md/CL/04/CL_0002604.md index 528d1eff37..89caf91d6b 100644 --- a/md/CL/04/CL_0002604.md +++ b/md/CL/04/CL_0002604.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0005004.md b/md/CL/04/CL_0005004.md index 4984347be6..f3373ad957 100644 --- a/md/CL/04/CL_0005004.md +++ b/md/CL/04/CL_0005004.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0007004.md b/md/CL/04/CL_0007004.md index acd416a7a5..c9c0973af7 100644 --- a/md/CL/04/CL_0007004.md +++ b/md/CL/04/CL_0007004.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0009004.md b/md/CL/04/CL_0009004.md index 7dc7134adb..0300e6f425 100644 --- a/md/CL/04/CL_0009004.md +++ b/md/CL/04/CL_0009004.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0010004.md b/md/CL/04/CL_0010004.md index 9fc0b1731c..9995094895 100644 --- a/md/CL/04/CL_0010004.md +++ b/md/CL/04/CL_0010004.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0011004.md b/md/CL/04/CL_0011004.md index 4ae5c128e0..5b31fc90b9 100644 --- a/md/CL/04/CL_0011004.md +++ b/md/CL/04/CL_0011004.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_0011104.md b/md/CL/04/CL_0011104.md index 0fc9a6787f..7f90684da2 100644 --- a/md/CL/04/CL_0011104.md +++ b/md/CL/04/CL_0011104.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_1000304.md b/md/CL/04/CL_1000304.md index 91f7db236b..ae96c6b009 100644 --- a/md/CL/04/CL_1000304.md +++ b/md/CL/04/CL_1000304.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_1000504.md b/md/CL/04/CL_1000504.md index 17a61daa20..c639fd4c94 100644 --- a/md/CL/04/CL_1000504.md +++ b/md/CL/04/CL_1000504.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/04/CL_1000804.md b/md/CL/04/CL_1000804.md index 65e62ebb62..0908e90aa1 100644 --- a/md/CL/04/CL_1000804.md +++ b/md/CL/04/CL_1000804.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000005.md b/md/CL/05/CL_0000005.md index 1213b2ad3e..4115873273 100644 --- a/md/CL/05/CL_0000005.md +++ b/md/CL/05/CL_0000005.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000105.md b/md/CL/05/CL_0000105.md index 61ba8fd50c..e8f5f70abf 100644 --- a/md/CL/05/CL_0000105.md +++ b/md/CL/05/CL_0000105.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000205.md b/md/CL/05/CL_0000205.md index 1a2270650c..034a60eb0c 100644 --- a/md/CL/05/CL_0000205.md +++ b/md/CL/05/CL_0000205.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000405.md b/md/CL/05/CL_0000405.md index 673db82a15..9be86a609b 100644 --- a/md/CL/05/CL_0000405.md +++ b/md/CL/05/CL_0000405.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000505.md b/md/CL/05/CL_0000505.md index 2faca87886..46d41babaf 100644 --- a/md/CL/05/CL_0000505.md +++ b/md/CL/05/CL_0000505.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000605.md b/md/CL/05/CL_0000605.md index 2003510138..d6dda0fc61 100644 --- a/md/CL/05/CL_0000605.md +++ b/md/CL/05/CL_0000605.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000705.md b/md/CL/05/CL_0000705.md index 3ee3766dcc..0f9f8a6b5a 100644 --- a/md/CL/05/CL_0000705.md +++ b/md/CL/05/CL_0000705.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000805.md b/md/CL/05/CL_0000805.md index bd30da1b65..ddfcc4aa2f 100644 --- a/md/CL/05/CL_0000805.md +++ b/md/CL/05/CL_0000805.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0000905.md b/md/CL/05/CL_0000905.md index 8e890d757b..5203d613e0 100644 --- a/md/CL/05/CL_0000905.md +++ b/md/CL/05/CL_0000905.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0001005.md b/md/CL/05/CL_0001005.md index d5b739e4eb..a1a8b0b914 100644 --- a/md/CL/05/CL_0001005.md +++ b/md/CL/05/CL_0001005.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002005.md b/md/CL/05/CL_0002005.md index ba238a820b..336db97595 100644 --- a/md/CL/05/CL_0002005.md +++ b/md/CL/05/CL_0002005.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002105.md b/md/CL/05/CL_0002105.md index 68587e06f3..e5295a5667 100644 --- a/md/CL/05/CL_0002105.md +++ b/md/CL/05/CL_0002105.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002205.md b/md/CL/05/CL_0002205.md index dff30f81d7..e82b3641c0 100644 --- a/md/CL/05/CL_0002205.md +++ b/md/CL/05/CL_0002205.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002305.md b/md/CL/05/CL_0002305.md index 68681bd0d6..946a60d780 100644 --- a/md/CL/05/CL_0002305.md +++ b/md/CL/05/CL_0002305.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002405.md b/md/CL/05/CL_0002405.md index 3baac8c0ea..0ebcb7efd9 100644 --- a/md/CL/05/CL_0002405.md +++ b/md/CL/05/CL_0002405.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002505.md b/md/CL/05/CL_0002505.md index ccecae637d..7c9ae5fec0 100644 --- a/md/CL/05/CL_0002505.md +++ b/md/CL/05/CL_0002505.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0002605.md b/md/CL/05/CL_0002605.md index 8b149ff2d0..bd94ab2cf0 100644 --- a/md/CL/05/CL_0002605.md +++ b/md/CL/05/CL_0002605.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0005005.md b/md/CL/05/CL_0005005.md index 304b39cfaa..d016d64ade 100644 --- a/md/CL/05/CL_0005005.md +++ b/md/CL/05/CL_0005005.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0007005.md b/md/CL/05/CL_0007005.md index 954d5845cd..b77eda3ce7 100644 --- a/md/CL/05/CL_0007005.md +++ b/md/CL/05/CL_0007005.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0008005.md b/md/CL/05/CL_0008005.md index 8fbb0e8596..10def2339c 100644 --- a/md/CL/05/CL_0008005.md +++ b/md/CL/05/CL_0008005.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0009005.md b/md/CL/05/CL_0009005.md index a23e7e6e15..1239dbf7a3 100644 --- a/md/CL/05/CL_0009005.md +++ b/md/CL/05/CL_0009005.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0011005.md b/md/CL/05/CL_0011005.md index dcdca6d247..7ad664b761 100644 --- a/md/CL/05/CL_0011005.md +++ b/md/CL/05/CL_0011005.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_0011105.md b/md/CL/05/CL_0011105.md index 12c2c89a17..c6e6eae270 100644 --- a/md/CL/05/CL_0011105.md +++ b/md/CL/05/CL_0011105.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_1000305.md b/md/CL/05/CL_1000305.md index 4ce1dfdc76..8aa2f9b37e 100644 --- a/md/CL/05/CL_1000305.md +++ b/md/CL/05/CL_1000305.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_1000405.md b/md/CL/05/CL_1000405.md index 92263b5d2f..3f6f80891d 100644 --- a/md/CL/05/CL_1000405.md +++ b/md/CL/05/CL_1000405.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_1000505.md b/md/CL/05/CL_1000505.md index b9eb6abd43..b51edf87b8 100644 --- a/md/CL/05/CL_1000505.md +++ b/md/CL/05/CL_1000505.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_1001005.md b/md/CL/05/CL_1001005.md index 308c37cd5e..0b1beb83f0 100644 --- a/md/CL/05/CL_1001005.md +++ b/md/CL/05/CL_1001005.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/05/CL_1001505.md b/md/CL/05/CL_1001505.md index ffcb7c47b6..15af69df9a 100644 --- a/md/CL/05/CL_1001505.md +++ b/md/CL/05/CL_1001505.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000006.md b/md/CL/06/CL_0000006.md index adbde5b2e0..c45910a9c0 100644 --- a/md/CL/06/CL_0000006.md +++ b/md/CL/06/CL_0000006.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000106.md b/md/CL/06/CL_0000106.md index 67a0d8eac2..40b0b14efb 100644 --- a/md/CL/06/CL_0000106.md +++ b/md/CL/06/CL_0000106.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000206.md b/md/CL/06/CL_0000206.md index 97b682c8cd..69d710a099 100644 --- a/md/CL/06/CL_0000206.md +++ b/md/CL/06/CL_0000206.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000306.md b/md/CL/06/CL_0000306.md index 0da5c2a98d..45e06a2190 100644 --- a/md/CL/06/CL_0000306.md +++ b/md/CL/06/CL_0000306.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000406.md b/md/CL/06/CL_0000406.md index a9bb5e307a..a547c1505f 100644 --- a/md/CL/06/CL_0000406.md +++ b/md/CL/06/CL_0000406.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000506.md b/md/CL/06/CL_0000506.md index dccf13b513..fc706ef018 100644 --- a/md/CL/06/CL_0000506.md +++ b/md/CL/06/CL_0000506.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000606.md b/md/CL/06/CL_0000606.md index 855e709bcd..837e72a885 100644 --- a/md/CL/06/CL_0000606.md +++ b/md/CL/06/CL_0000606.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000706.md b/md/CL/06/CL_0000706.md index 9d8fa919be..857032018f 100644 --- a/md/CL/06/CL_0000706.md +++ b/md/CL/06/CL_0000706.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000806.md b/md/CL/06/CL_0000806.md index ef1427aaef..39c7e1db13 100644 --- a/md/CL/06/CL_0000806.md +++ b/md/CL/06/CL_0000806.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0000906.md b/md/CL/06/CL_0000906.md index 68f3008c08..9ae5120402 100644 --- a/md/CL/06/CL_0000906.md +++ b/md/CL/06/CL_0000906.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0001006.md b/md/CL/06/CL_0001006.md index ed13de1c82..a60b1d077e 100644 --- a/md/CL/06/CL_0001006.md +++ b/md/CL/06/CL_0001006.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002006.md b/md/CL/06/CL_0002006.md index 4fa3990a00..eac3716727 100644 --- a/md/CL/06/CL_0002006.md +++ b/md/CL/06/CL_0002006.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002106.md b/md/CL/06/CL_0002106.md index 4335b58061..ced94e5fb2 100644 --- a/md/CL/06/CL_0002106.md +++ b/md/CL/06/CL_0002106.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002206.md b/md/CL/06/CL_0002206.md index 8b8fe61b11..868e504a32 100644 --- a/md/CL/06/CL_0002206.md +++ b/md/CL/06/CL_0002206.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002306.md b/md/CL/06/CL_0002306.md index 4bbc59b60e..a89d7037b8 100644 --- a/md/CL/06/CL_0002306.md +++ b/md/CL/06/CL_0002306.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002406.md b/md/CL/06/CL_0002406.md index 1fca71e61f..fd98939fca 100644 --- a/md/CL/06/CL_0002406.md +++ b/md/CL/06/CL_0002406.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002506.md b/md/CL/06/CL_0002506.md index 0aa0ff0a40..b117307185 100644 --- a/md/CL/06/CL_0002506.md +++ b/md/CL/06/CL_0002506.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0002606.md b/md/CL/06/CL_0002606.md index 7048c8ff6f..048b1dc68c 100644 --- a/md/CL/06/CL_0002606.md +++ b/md/CL/06/CL_0002606.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0005006.md b/md/CL/06/CL_0005006.md index f1970de27a..6c969c8349 100644 --- a/md/CL/06/CL_0005006.md +++ b/md/CL/06/CL_0005006.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0007006.md b/md/CL/06/CL_0007006.md index 77a824ca6c..1b89afaf39 100644 --- a/md/CL/06/CL_0007006.md +++ b/md/CL/06/CL_0007006.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0011006.md b/md/CL/06/CL_0011006.md index 020e8e296b..fed6253053 100644 --- a/md/CL/06/CL_0011006.md +++ b/md/CL/06/CL_0011006.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_0011106.md b/md/CL/06/CL_0011106.md index b799481afd..8ce04da503 100644 --- a/md/CL/06/CL_0011106.md +++ b/md/CL/06/CL_0011106.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1000306.md b/md/CL/06/CL_1000306.md index 7c1b01fe76..ab3fc440cb 100644 --- a/md/CL/06/CL_1000306.md +++ b/md/CL/06/CL_1000306.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1000606.md b/md/CL/06/CL_1000606.md index 230ae7c18b..6c8925c3f3 100644 --- a/md/CL/06/CL_1000606.md +++ b/md/CL/06/CL_1000606.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1000706.md b/md/CL/06/CL_1000706.md index 65b2401b0a..fce9d2e424 100644 --- a/md/CL/06/CL_1000706.md +++ b/md/CL/06/CL_1000706.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1001006.md b/md/CL/06/CL_1001006.md index 46156f8c3c..6518775e38 100644 --- a/md/CL/06/CL_1001006.md +++ b/md/CL/06/CL_1001006.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1001106.md b/md/CL/06/CL_1001106.md index 37b6866bc8..7a2d1a0e73 100644 --- a/md/CL/06/CL_1001106.md +++ b/md/CL/06/CL_1001106.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/06/CL_1001606.md b/md/CL/06/CL_1001606.md index 92571542f2..7c57231844 100644 --- a/md/CL/06/CL_1001606.md +++ b/md/CL/06/CL_1001606.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000007.md b/md/CL/07/CL_0000007.md index 9fc491631a..441b0ec75f 100644 --- a/md/CL/07/CL_0000007.md +++ b/md/CL/07/CL_0000007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000107.md b/md/CL/07/CL_0000107.md index 4c635558c7..d4b92320dc 100644 --- a/md/CL/07/CL_0000107.md +++ b/md/CL/07/CL_0000107.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000207.md b/md/CL/07/CL_0000207.md index 50a6b6f91d..72511a82ff 100644 --- a/md/CL/07/CL_0000207.md +++ b/md/CL/07/CL_0000207.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000307.md b/md/CL/07/CL_0000307.md index a07858d380..7568ad7141 100644 --- a/md/CL/07/CL_0000307.md +++ b/md/CL/07/CL_0000307.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000407.md b/md/CL/07/CL_0000407.md index a9f2f26a3f..e417d70cca 100644 --- a/md/CL/07/CL_0000407.md +++ b/md/CL/07/CL_0000407.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000507.md b/md/CL/07/CL_0000507.md index 39106043da..ab3932a25a 100644 --- a/md/CL/07/CL_0000507.md +++ b/md/CL/07/CL_0000507.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000607.md b/md/CL/07/CL_0000607.md index 6b73e0e668..de7e5c6c46 100644 --- a/md/CL/07/CL_0000607.md +++ b/md/CL/07/CL_0000607.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000707.md b/md/CL/07/CL_0000707.md index 9c5855b6a3..562e0a0ff1 100644 --- a/md/CL/07/CL_0000707.md +++ b/md/CL/07/CL_0000707.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000807.md b/md/CL/07/CL_0000807.md index c44cb67a22..f2fb12f00b 100644 --- a/md/CL/07/CL_0000807.md +++ b/md/CL/07/CL_0000807.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0000907.md b/md/CL/07/CL_0000907.md index 1e8b36b465..4e5a679eda 100644 --- a/md/CL/07/CL_0000907.md +++ b/md/CL/07/CL_0000907.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0001007.md b/md/CL/07/CL_0001007.md index f4dd5e7614..6043565c19 100644 --- a/md/CL/07/CL_0001007.md +++ b/md/CL/07/CL_0001007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002007.md b/md/CL/07/CL_0002007.md index c81ea4004b..efd26e9531 100644 --- a/md/CL/07/CL_0002007.md +++ b/md/CL/07/CL_0002007.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002107.md b/md/CL/07/CL_0002107.md index 43d18f150e..3cf8bab100 100644 --- a/md/CL/07/CL_0002107.md +++ b/md/CL/07/CL_0002107.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002207.md b/md/CL/07/CL_0002207.md index 884313b556..56c1efea25 100644 --- a/md/CL/07/CL_0002207.md +++ b/md/CL/07/CL_0002207.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002307.md b/md/CL/07/CL_0002307.md index 39783b9fb3..8a05ea91dc 100644 --- a/md/CL/07/CL_0002307.md +++ b/md/CL/07/CL_0002307.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002407.md b/md/CL/07/CL_0002407.md index 75a475a4a9..77018be6ae 100644 --- a/md/CL/07/CL_0002407.md +++ b/md/CL/07/CL_0002407.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002507.md b/md/CL/07/CL_0002507.md index cb7ea2003c..1b05511959 100644 --- a/md/CL/07/CL_0002507.md +++ b/md/CL/07/CL_0002507.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0002607.md b/md/CL/07/CL_0002607.md index f3f7626c32..3748288c0e 100644 --- a/md/CL/07/CL_0002607.md +++ b/md/CL/07/CL_0002607.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0005007.md b/md/CL/07/CL_0005007.md index 79dba79424..46d2b90c80 100644 --- a/md/CL/07/CL_0005007.md +++ b/md/CL/07/CL_0005007.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0007007.md b/md/CL/07/CL_0007007.md index b241ef3ec2..ee728c4bdc 100644 --- a/md/CL/07/CL_0007007.md +++ b/md/CL/07/CL_0007007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_0011107.md b/md/CL/07/CL_0011107.md index 76d176cca9..d253e9d84c 100644 --- a/md/CL/07/CL_0011107.md +++ b/md/CL/07/CL_0011107.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_1000307.md b/md/CL/07/CL_1000307.md index a0b5de5a69..8fb2c8c438 100644 --- a/md/CL/07/CL_1000307.md +++ b/md/CL/07/CL_1000307.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_1000507.md b/md/CL/07/CL_1000507.md index 8f70c9ce8a..f17e7e6ae1 100644 --- a/md/CL/07/CL_1000507.md +++ b/md/CL/07/CL_1000507.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_1001107.md b/md/CL/07/CL_1001107.md index c4eaf4062a..c5e90d994f 100644 --- a/md/CL/07/CL_1001107.md +++ b/md/CL/07/CL_1001107.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/07/CL_1001607.md b/md/CL/07/CL_1001607.md index 60b08d77f9..c038055d39 100644 --- a/md/CL/07/CL_1001607.md +++ b/md/CL/07/CL_1001607.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000008.md b/md/CL/08/CL_0000008.md index dc26e11c66..4521962947 100644 --- a/md/CL/08/CL_0000008.md +++ b/md/CL/08/CL_0000008.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000108.md b/md/CL/08/CL_0000108.md index 3265e09b47..a6a868f2ac 100644 --- a/md/CL/08/CL_0000108.md +++ b/md/CL/08/CL_0000108.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectSomeValuesFrom( ) + * [capable_of](../../RO/15/RO_0002215.md) some [GO_0007271](../../GO/71/GO_0007271.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000208.md b/md/CL/08/CL_0000208.md index 6476592ef9..8b76d3ff67 100644 --- a/md/CL/08/CL_0000208.md +++ b/md/CL/08/CL_0000208.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000308.md b/md/CL/08/CL_0000308.md index 0ab6d4611b..bc4a96c466 100644 --- a/md/CL/08/CL_0000308.md +++ b/md/CL/08/CL_0000308.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000408.md b/md/CL/08/CL_0000408.md index 2258ce72ca..ef2133532a 100644 --- a/md/CL/08/CL_0000408.md +++ b/md/CL/08/CL_0000408.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000508.md b/md/CL/08/CL_0000508.md index e935674663..0a8e202d0a 100644 --- a/md/CL/08/CL_0000508.md +++ b/md/CL/08/CL_0000508.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000608.md b/md/CL/08/CL_0000608.md index b42dca5036..c700a709ea 100644 --- a/md/CL/08/CL_0000608.md +++ b/md/CL/08/CL_0000608.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000708.md b/md/CL/08/CL_0000708.md index 913e9c3e2e..6435f664f8 100644 --- a/md/CL/08/CL_0000708.md +++ b/md/CL/08/CL_0000708.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000808.md b/md/CL/08/CL_0000808.md index 7bb9877dd9..07a7b4a5ca 100644 --- a/md/CL/08/CL_0000808.md +++ b/md/CL/08/CL_0000808.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0000908.md b/md/CL/08/CL_0000908.md index b331506142..6f3333899b 100644 --- a/md/CL/08/CL_0000908.md +++ b/md/CL/08/CL_0000908.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0001008.md b/md/CL/08/CL_0001008.md index 81a3b4c8fb..a36d6d7b65 100644 --- a/md/CL/08/CL_0001008.md +++ b/md/CL/08/CL_0001008.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002008.md b/md/CL/08/CL_0002008.md index a5241eeacf..75c77b6b66 100644 --- a/md/CL/08/CL_0002008.md +++ b/md/CL/08/CL_0002008.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002108.md b/md/CL/08/CL_0002108.md index 27d2617223..97d576614b 100644 --- a/md/CL/08/CL_0002108.md +++ b/md/CL/08/CL_0002108.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002208.md b/md/CL/08/CL_0002208.md index f1d9fda240..eae50ac5f3 100644 --- a/md/CL/08/CL_0002208.md +++ b/md/CL/08/CL_0002208.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002308.md b/md/CL/08/CL_0002308.md index c6b591d65e..5db098d85d 100644 --- a/md/CL/08/CL_0002308.md +++ b/md/CL/08/CL_0002308.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002408.md b/md/CL/08/CL_0002408.md index c2286b8a1c..d911f43ae9 100644 --- a/md/CL/08/CL_0002408.md +++ b/md/CL/08/CL_0002408.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002508.md b/md/CL/08/CL_0002508.md index faea4dd1bd..ac24035bd7 100644 --- a/md/CL/08/CL_0002508.md +++ b/md/CL/08/CL_0002508.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0002608.md b/md/CL/08/CL_0002608.md index 2cc4c79e2d..b2c17f18af 100644 --- a/md/CL/08/CL_0002608.md +++ b/md/CL/08/CL_0002608.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0005008.md b/md/CL/08/CL_0005008.md index bc76618dec..abe3d51274 100644 --- a/md/CL/08/CL_0005008.md +++ b/md/CL/08/CL_0005008.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0007008.md b/md/CL/08/CL_0007008.md index f15cb84961..f5a60ac0e1 100644 --- a/md/CL/08/CL_0007008.md +++ b/md/CL/08/CL_0007008.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_0011108.md b/md/CL/08/CL_0011108.md index b2d53abb0c..bddaa14c93 100644 --- a/md/CL/08/CL_0011108.md +++ b/md/CL/08/CL_0011108.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_1000308.md b/md/CL/08/CL_1000308.md index 3f4dc2f770..ea99f02748 100644 --- a/md/CL/08/CL_1000308.md +++ b/md/CL/08/CL_1000308.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_1000708.md b/md/CL/08/CL_1000708.md index 8401e85554..94a8064464 100644 --- a/md/CL/08/CL_1000708.md +++ b/md/CL/08/CL_1000708.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_1001108.md b/md/CL/08/CL_1001108.md index c8a181c787..574d36aca8 100644 --- a/md/CL/08/CL_1001108.md +++ b/md/CL/08/CL_1001108.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/08/CL_1001608.md b/md/CL/08/CL_1001608.md index 9e4eff13d5..856c237ad0 100644 --- a/md/CL/08/CL_1001608.md +++ b/md/CL/08/CL_1001608.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000109.md b/md/CL/09/CL_0000109.md index 170231ec51..5fe93c282b 100644 --- a/md/CL/09/CL_0000109.md +++ b/md/CL/09/CL_0000109.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000209.md b/md/CL/09/CL_0000209.md index 4baef24407..7b567669e7 100644 --- a/md/CL/09/CL_0000209.md +++ b/md/CL/09/CL_0000209.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000309.md b/md/CL/09/CL_0000309.md index 2de8a6e108..394d6e2b9c 100644 --- a/md/CL/09/CL_0000309.md +++ b/md/CL/09/CL_0000309.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000409.md b/md/CL/09/CL_0000409.md index 17e087aac2..b765fee603 100644 --- a/md/CL/09/CL_0000409.md +++ b/md/CL/09/CL_0000409.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000509.md b/md/CL/09/CL_0000509.md index 3e788fb03c..2c2a1fe72d 100644 --- a/md/CL/09/CL_0000509.md +++ b/md/CL/09/CL_0000509.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000609.md b/md/CL/09/CL_0000609.md index d304d92cb3..4ff2d92618 100644 --- a/md/CL/09/CL_0000609.md +++ b/md/CL/09/CL_0000609.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000709.md b/md/CL/09/CL_0000709.md index 9a61430cf1..2fb79a2d4d 100644 --- a/md/CL/09/CL_0000709.md +++ b/md/CL/09/CL_0000709.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000809.md b/md/CL/09/CL_0000809.md index d84e2c169c..9305d3d88f 100644 --- a/md/CL/09/CL_0000809.md +++ b/md/CL/09/CL_0000809.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0000909.md b/md/CL/09/CL_0000909.md index 9029ba3adc..d8acec09a4 100644 --- a/md/CL/09/CL_0000909.md +++ b/md/CL/09/CL_0000909.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0001009.md b/md/CL/09/CL_0001009.md index 3ee53c43d5..b095f9bd7f 100644 --- a/md/CL/09/CL_0001009.md +++ b/md/CL/09/CL_0001009.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002009.md b/md/CL/09/CL_0002009.md index 36db71aeb3..93e00b0862 100644 --- a/md/CL/09/CL_0002009.md +++ b/md/CL/09/CL_0002009.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002109.md b/md/CL/09/CL_0002109.md index e47fb3c143..9b60e2a404 100644 --- a/md/CL/09/CL_0002109.md +++ b/md/CL/09/CL_0002109.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002209.md b/md/CL/09/CL_0002209.md index 0b5ae253ac..c4c8339d4a 100644 --- a/md/CL/09/CL_0002209.md +++ b/md/CL/09/CL_0002209.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002309.md b/md/CL/09/CL_0002309.md index 2a4c222bf8..5ca2d0908d 100644 --- a/md/CL/09/CL_0002309.md +++ b/md/CL/09/CL_0002309.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002409.md b/md/CL/09/CL_0002409.md index 07b61223d9..9e3f527c60 100644 --- a/md/CL/09/CL_0002409.md +++ b/md/CL/09/CL_0002409.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002509.md b/md/CL/09/CL_0002509.md index 08231f8712..3060091348 100644 --- a/md/CL/09/CL_0002509.md +++ b/md/CL/09/CL_0002509.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0002609.md b/md/CL/09/CL_0002609.md index 7e345106aa..436950eacf 100644 --- a/md/CL/09/CL_0002609.md +++ b/md/CL/09/CL_0002609.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0005009.md b/md/CL/09/CL_0005009.md index f7ad3d110c..b39a3eadad 100644 --- a/md/CL/09/CL_0005009.md +++ b/md/CL/09/CL_0005009.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_0007009.md b/md/CL/09/CL_0007009.md index 9537edabb8..ef7ab00096 100644 --- a/md/CL/09/CL_0007009.md +++ b/md/CL/09/CL_0007009.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1000309.md b/md/CL/09/CL_1000309.md index 217401464a..93a474063e 100644 --- a/md/CL/09/CL_1000309.md +++ b/md/CL/09/CL_1000309.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1000409.md b/md/CL/09/CL_1000409.md index 6e124c8745..56f1400266 100644 --- a/md/CL/09/CL_1000409.md +++ b/md/CL/09/CL_1000409.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1000909.md b/md/CL/09/CL_1000909.md index ae3b74cd6b..9b74822840 100644 --- a/md/CL/09/CL_1000909.md +++ b/md/CL/09/CL_1000909.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1001009.md b/md/CL/09/CL_1001009.md index 5f0b290b84..b51a7800ee 100644 --- a/md/CL/09/CL_1001009.md +++ b/md/CL/09/CL_1001009.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1001109.md b/md/CL/09/CL_1001109.md index 058252b69b..d0668b20e3 100644 --- a/md/CL/09/CL_1001109.md +++ b/md/CL/09/CL_1001109.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1001209.md b/md/CL/09/CL_1001209.md index 2c1babe95b..259204bbb6 100644 --- a/md/CL/09/CL_1001209.md +++ b/md/CL/09/CL_1001209.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1001509.md b/md/CL/09/CL_1001509.md index 0806925882..bc74208e0f 100644 --- a/md/CL/09/CL_1001509.md +++ b/md/CL/09/CL_1001509.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/09/CL_1001609.md b/md/CL/09/CL_1001609.md index 868e10e8fc..bffbbd833c 100644 --- a/md/CL/09/CL_1001609.md +++ b/md/CL/09/CL_1001609.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000010.md b/md/CL/10/CL_0000010.md index a95f484793..b699027e3e 100644 --- a/md/CL/10/CL_0000010.md +++ b/md/CL/10/CL_0000010.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000110.md b/md/CL/10/CL_0000110.md index b4b5cd5b02..3c99c50260 100644 --- a/md/CL/10/CL_0000110.md +++ b/md/CL/10/CL_0000110.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000210.md b/md/CL/10/CL_0000210.md index d457cab73a..0fc31ace02 100644 --- a/md/CL/10/CL_0000210.md +++ b/md/CL/10/CL_0000210.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000310.md b/md/CL/10/CL_0000310.md index 8ab8b6f1b2..d41fbb4d0e 100644 --- a/md/CL/10/CL_0000310.md +++ b/md/CL/10/CL_0000310.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000410.md b/md/CL/10/CL_0000410.md index 3b73c5f854..9597b793bc 100644 --- a/md/CL/10/CL_0000410.md +++ b/md/CL/10/CL_0000410.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000510.md b/md/CL/10/CL_0000510.md index f638feb9e3..bf0890f5f7 100644 --- a/md/CL/10/CL_0000510.md +++ b/md/CL/10/CL_0000510.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000710.md b/md/CL/10/CL_0000710.md index 61e81b1f0c..95b0fe8ced 100644 --- a/md/CL/10/CL_0000710.md +++ b/md/CL/10/CL_0000710.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000810.md b/md/CL/10/CL_0000810.md index 8483741a05..b516a76088 100644 --- a/md/CL/10/CL_0000810.md +++ b/md/CL/10/CL_0000810.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0000910.md b/md/CL/10/CL_0000910.md index 3bbd72a6b3..ede428ca77 100644 --- a/md/CL/10/CL_0000910.md +++ b/md/CL/10/CL_0000910.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0001010.md b/md/CL/10/CL_0001010.md index a892d15086..7b7020bf98 100644 --- a/md/CL/10/CL_0001010.md +++ b/md/CL/10/CL_0001010.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002010.md b/md/CL/10/CL_0002010.md index ad0d844e47..2f3cc03160 100644 --- a/md/CL/10/CL_0002010.md +++ b/md/CL/10/CL_0002010.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002110.md b/md/CL/10/CL_0002110.md index 022217b966..48524e4ae8 100644 --- a/md/CL/10/CL_0002110.md +++ b/md/CL/10/CL_0002110.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002210.md b/md/CL/10/CL_0002210.md index f152a765e2..3989979e8a 100644 --- a/md/CL/10/CL_0002210.md +++ b/md/CL/10/CL_0002210.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002310.md b/md/CL/10/CL_0002310.md index 38dee4f989..4863ceda82 100644 --- a/md/CL/10/CL_0002310.md +++ b/md/CL/10/CL_0002310.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002410.md b/md/CL/10/CL_0002410.md index 900a3699da..aa30612b56 100644 --- a/md/CL/10/CL_0002410.md +++ b/md/CL/10/CL_0002410.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002510.md b/md/CL/10/CL_0002510.md index 9821d61bad..9dbfde687c 100644 --- a/md/CL/10/CL_0002510.md +++ b/md/CL/10/CL_0002510.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0002610.md b/md/CL/10/CL_0002610.md index f9c0fee8e0..f91f00053b 100644 --- a/md/CL/10/CL_0002610.md +++ b/md/CL/10/CL_0002610.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0005010.md b/md/CL/10/CL_0005010.md index 7b8f5d24e2..a2a52d05d3 100644 --- a/md/CL/10/CL_0005010.md +++ b/md/CL/10/CL_0005010.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_0007010.md b/md/CL/10/CL_0007010.md index f0ed589056..4161752630 100644 --- a/md/CL/10/CL_0007010.md +++ b/md/CL/10/CL_0007010.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_1000310.md b/md/CL/10/CL_1000310.md index 3dfee3df9d..e2eebe095f 100644 --- a/md/CL/10/CL_1000310.md +++ b/md/CL/10/CL_1000310.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_1000410.md b/md/CL/10/CL_1000410.md index 8fa5326bd4..02ee38f358 100644 --- a/md/CL/10/CL_1000410.md +++ b/md/CL/10/CL_1000410.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_1000510.md b/md/CL/10/CL_1000510.md index 005e92f2e6..3e1bdeb031 100644 --- a/md/CL/10/CL_1000510.md +++ b/md/CL/10/CL_1000510.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_1001210.md b/md/CL/10/CL_1001210.md index 4cb98b8a28..12792350ab 100644 --- a/md/CL/10/CL_1001210.md +++ b/md/CL/10/CL_1001210.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/10/CL_1001610.md b/md/CL/10/CL_1001610.md index 154913e9c3..0fa00e2555 100644 --- a/md/CL/10/CL_1001610.md +++ b/md/CL/10/CL_1001610.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000011.md b/md/CL/11/CL_0000011.md index 02b66a1349..24e3d2a8e5 100644 --- a/md/CL/11/CL_0000011.md +++ b/md/CL/11/CL_0000011.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000111.md b/md/CL/11/CL_0000111.md index 0140dcd74a..f24c152dec 100644 --- a/md/CL/11/CL_0000111.md +++ b/md/CL/11/CL_0000111.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000211.md b/md/CL/11/CL_0000211.md index 51c6b468a1..75e3d81a19 100644 --- a/md/CL/11/CL_0000211.md +++ b/md/CL/11/CL_0000211.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000311.md b/md/CL/11/CL_0000311.md index c1043c0c73..18678b37c7 100644 --- a/md/CL/11/CL_0000311.md +++ b/md/CL/11/CL_0000311.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000411.md b/md/CL/11/CL_0000411.md index 41a9c92e9c..ead07c3f34 100644 --- a/md/CL/11/CL_0000411.md +++ b/md/CL/11/CL_0000411.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000511.md b/md/CL/11/CL_0000511.md index 6c0db2b69d..075c580d3e 100644 --- a/md/CL/11/CL_0000511.md +++ b/md/CL/11/CL_0000511.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000611.md b/md/CL/11/CL_0000611.md index c0b0c290f4..a6725211a9 100644 --- a/md/CL/11/CL_0000611.md +++ b/md/CL/11/CL_0000611.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000711.md b/md/CL/11/CL_0000711.md index 6b720e5675..3b5f40ef74 100644 --- a/md/CL/11/CL_0000711.md +++ b/md/CL/11/CL_0000711.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000811.md b/md/CL/11/CL_0000811.md index 6d986c1ee4..9829544e1d 100644 --- a/md/CL/11/CL_0000811.md +++ b/md/CL/11/CL_0000811.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0000911.md b/md/CL/11/CL_0000911.md index a71ec22c48..59cb01447a 100644 --- a/md/CL/11/CL_0000911.md +++ b/md/CL/11/CL_0000911.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0001011.md b/md/CL/11/CL_0001011.md index 856ce880f2..974300d69f 100644 --- a/md/CL/11/CL_0001011.md +++ b/md/CL/11/CL_0001011.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002011.md b/md/CL/11/CL_0002011.md index 76ad8e0540..e9eeaaed9d 100644 --- a/md/CL/11/CL_0002011.md +++ b/md/CL/11/CL_0002011.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002111.md b/md/CL/11/CL_0002111.md index 0ed6dc77a3..fc71f1feee 100644 --- a/md/CL/11/CL_0002111.md +++ b/md/CL/11/CL_0002111.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002211.md b/md/CL/11/CL_0002211.md index e16ab6850a..8fc5f066ee 100644 --- a/md/CL/11/CL_0002211.md +++ b/md/CL/11/CL_0002211.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002311.md b/md/CL/11/CL_0002311.md index d229379bc9..0f6284a5b8 100644 --- a/md/CL/11/CL_0002311.md +++ b/md/CL/11/CL_0002311.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002411.md b/md/CL/11/CL_0002411.md index a374847236..a66a2bff0d 100644 --- a/md/CL/11/CL_0002411.md +++ b/md/CL/11/CL_0002411.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002511.md b/md/CL/11/CL_0002511.md index a271e2a4b8..ad92a1b170 100644 --- a/md/CL/11/CL_0002511.md +++ b/md/CL/11/CL_0002511.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0002611.md b/md/CL/11/CL_0002611.md index 784dd7de0f..25307ae634 100644 --- a/md/CL/11/CL_0002611.md +++ b/md/CL/11/CL_0002611.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0005011.md b/md/CL/11/CL_0005011.md index 28a8f99e5b..52fc9b3192 100644 --- a/md/CL/11/CL_0005011.md +++ b/md/CL/11/CL_0005011.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_0007011.md b/md/CL/11/CL_0007011.md index b850561b30..c8d4668e0e 100644 --- a/md/CL/11/CL_0007011.md +++ b/md/CL/11/CL_0007011.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_1000311.md b/md/CL/11/CL_1000311.md index a0abeb3f73..449d81773d 100644 --- a/md/CL/11/CL_1000311.md +++ b/md/CL/11/CL_1000311.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_1000411.md b/md/CL/11/CL_1000411.md index 7e0442db3e..1d30741d56 100644 --- a/md/CL/11/CL_1000411.md +++ b/md/CL/11/CL_1000411.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_1001111.md b/md/CL/11/CL_1001111.md index 47faea9463..e84b518254 100644 --- a/md/CL/11/CL_1001111.md +++ b/md/CL/11/CL_1001111.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/11/CL_1001611.md b/md/CL/11/CL_1001611.md index ba62ff4523..e04605bdfa 100644 --- a/md/CL/11/CL_1001611.md +++ b/md/CL/11/CL_1001611.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000112.md b/md/CL/12/CL_0000112.md index d775ab3909..4025ff9632 100644 --- a/md/CL/12/CL_0000112.md +++ b/md/CL/12/CL_0000112.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000212.md b/md/CL/12/CL_0000212.md index 0bb8d9c3f5..5d6bd34e91 100644 --- a/md/CL/12/CL_0000212.md +++ b/md/CL/12/CL_0000212.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000312.md b/md/CL/12/CL_0000312.md index a973dc7e11..9844754285 100644 --- a/md/CL/12/CL_0000312.md +++ b/md/CL/12/CL_0000312.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000412.md b/md/CL/12/CL_0000412.md index 30d62f1863..fd31599987 100644 --- a/md/CL/12/CL_0000412.md +++ b/md/CL/12/CL_0000412.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000512.md b/md/CL/12/CL_0000512.md index cfdf9fb56b..8cef81c863 100644 --- a/md/CL/12/CL_0000512.md +++ b/md/CL/12/CL_0000512.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000612.md b/md/CL/12/CL_0000612.md index 7036b4ddc2..f6b3509f69 100644 --- a/md/CL/12/CL_0000612.md +++ b/md/CL/12/CL_0000612.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000712.md b/md/CL/12/CL_0000712.md index 176c018f5b..95b14df0c5 100644 --- a/md/CL/12/CL_0000712.md +++ b/md/CL/12/CL_0000712.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0000912.md b/md/CL/12/CL_0000912.md index 5027665f74..a5e55de511 100644 --- a/md/CL/12/CL_0000912.md +++ b/md/CL/12/CL_0000912.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0001012.md b/md/CL/12/CL_0001012.md index 960aad96e8..89cd9ab675 100644 --- a/md/CL/12/CL_0001012.md +++ b/md/CL/12/CL_0001012.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [CD7-negative lymphoid progenitor cell](../../CL/27/CL_0001027.md)or[granulocyte monocyte progenitor cell](../../CL/57/CL_0000557.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002012.md b/md/CL/12/CL_0002012.md index 4665eb2e73..796f68b61f 100644 --- a/md/CL/12/CL_0002012.md +++ b/md/CL/12/CL_0002012.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002112.md b/md/CL/12/CL_0002112.md index 4dcd1573cf..21abd5d34d 100644 --- a/md/CL/12/CL_0002112.md +++ b/md/CL/12/CL_0002112.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002212.md b/md/CL/12/CL_0002212.md index f57b9ca8e0..86e2062bd7 100644 --- a/md/CL/12/CL_0002212.md +++ b/md/CL/12/CL_0002212.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002312.md b/md/CL/12/CL_0002312.md index c8d68125c8..d0bf7a5c85 100644 --- a/md/CL/12/CL_0002312.md +++ b/md/CL/12/CL_0002312.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002412.md b/md/CL/12/CL_0002412.md index 1910f1a81c..3cd36a5722 100644 --- a/md/CL/12/CL_0002412.md +++ b/md/CL/12/CL_0002412.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002512.md b/md/CL/12/CL_0002512.md index bfbf7b9e86..57f3527cee 100644 --- a/md/CL/12/CL_0002512.md +++ b/md/CL/12/CL_0002512.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0002612.md b/md/CL/12/CL_0002612.md index 80aa463cb8..136d8e22b8 100644 --- a/md/CL/12/CL_0002612.md +++ b/md/CL/12/CL_0002612.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0005012.md b/md/CL/12/CL_0005012.md index d97bb82e2d..b5480fa16e 100644 --- a/md/CL/12/CL_0005012.md +++ b/md/CL/12/CL_0005012.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_0007012.md b/md/CL/12/CL_0007012.md index 6e1512621b..5c7e18ea1b 100644 --- a/md/CL/12/CL_0007012.md +++ b/md/CL/12/CL_0007012.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_1000312.md b/md/CL/12/CL_1000312.md index 7923fa6ca2..4b39d33eac 100644 --- a/md/CL/12/CL_1000312.md +++ b/md/CL/12/CL_1000312.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_1000412.md b/md/CL/12/CL_1000412.md index 3f80129677..6058ccc902 100644 --- a/md/CL/12/CL_1000412.md +++ b/md/CL/12/CL_1000412.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/12/CL_1000612.md b/md/CL/12/CL_1000612.md index 21f66b4888..fae37fef93 100644 --- a/md/CL/12/CL_1000612.md +++ b/md/CL/12/CL_1000612.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000113.md b/md/CL/13/CL_0000113.md index ae1ee94340..007da1f08f 100644 --- a/md/CL/13/CL_0000113.md +++ b/md/CL/13/CL_0000113.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000213.md b/md/CL/13/CL_0000213.md index b415a62533..8b32a17024 100644 --- a/md/CL/13/CL_0000213.md +++ b/md/CL/13/CL_0000213.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000313.md b/md/CL/13/CL_0000313.md index 2305a45792..a6a3d21719 100644 --- a/md/CL/13/CL_0000313.md +++ b/md/CL/13/CL_0000313.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000413.md b/md/CL/13/CL_0000413.md index e052c4b57e..16b73568b0 100644 --- a/md/CL/13/CL_0000413.md +++ b/md/CL/13/CL_0000413.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000513.md b/md/CL/13/CL_0000513.md index c2272221bb..a48a8745e1 100644 --- a/md/CL/13/CL_0000513.md +++ b/md/CL/13/CL_0000513.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000613.md b/md/CL/13/CL_0000613.md index 5f258f0d9b..3ff9bd25f9 100644 --- a/md/CL/13/CL_0000613.md +++ b/md/CL/13/CL_0000613.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000713.md b/md/CL/13/CL_0000713.md index 2169a85720..4893f1c0b1 100644 --- a/md/CL/13/CL_0000713.md +++ b/md/CL/13/CL_0000713.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000813.md b/md/CL/13/CL_0000813.md index b2dfe0a0bb..d98ac1d32b 100644 --- a/md/CL/13/CL_0000813.md +++ b/md/CL/13/CL_0000813.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0000913.md b/md/CL/13/CL_0000913.md index 3514b0b1f2..78a789f1c3 100644 --- a/md/CL/13/CL_0000913.md +++ b/md/CL/13/CL_0000913.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0001013.md b/md/CL/13/CL_0001013.md index 1158fa4751..ee4ef21ac4 100644 --- a/md/CL/13/CL_0001013.md +++ b/md/CL/13/CL_0001013.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002013.md b/md/CL/13/CL_0002013.md index 129707888a..e175788f13 100644 --- a/md/CL/13/CL_0002013.md +++ b/md/CL/13/CL_0002013.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002113.md b/md/CL/13/CL_0002113.md index 4542c63640..b786e99c37 100644 --- a/md/CL/13/CL_0002113.md +++ b/md/CL/13/CL_0002113.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002213.md b/md/CL/13/CL_0002213.md index 205cf66a83..a4ee3e4b8e 100644 --- a/md/CL/13/CL_0002213.md +++ b/md/CL/13/CL_0002213.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002313.md b/md/CL/13/CL_0002313.md index 19ed2dca33..efec6b8cad 100644 --- a/md/CL/13/CL_0002313.md +++ b/md/CL/13/CL_0002313.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002413.md b/md/CL/13/CL_0002413.md index 73784af985..e25e36f613 100644 --- a/md/CL/13/CL_0002413.md +++ b/md/CL/13/CL_0002413.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002513.md b/md/CL/13/CL_0002513.md index a936cc71ee..e0fafaaa9b 100644 --- a/md/CL/13/CL_0002513.md +++ b/md/CL/13/CL_0002513.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0002613.md b/md/CL/13/CL_0002613.md index 13d5446de8..fcc57a7cf3 100644 --- a/md/CL/13/CL_0002613.md +++ b/md/CL/13/CL_0002613.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0005013.md b/md/CL/13/CL_0005013.md index 861b1226c0..409e46619c 100644 --- a/md/CL/13/CL_0005013.md +++ b/md/CL/13/CL_0005013.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_0007013.md b/md/CL/13/CL_0007013.md index 56fd34a253..f4268eb14a 100644 --- a/md/CL/13/CL_0007013.md +++ b/md/CL/13/CL_0007013.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_1000313.md b/md/CL/13/CL_1000313.md index 78f422bdec..25806012bc 100644 --- a/md/CL/13/CL_1000313.md +++ b/md/CL/13/CL_1000313.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_1000413.md b/md/CL/13/CL_1000413.md index 06a990c0b9..c46aee91f0 100644 --- a/md/CL/13/CL_1000413.md +++ b/md/CL/13/CL_1000413.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/13/CL_1001213.md b/md/CL/13/CL_1001213.md index cf2a68041b..dfc01740bc 100644 --- a/md/CL/13/CL_1001213.md +++ b/md/CL/13/CL_1001213.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000014.md b/md/CL/14/CL_0000014.md index 0ee6d700b8..285d4e5574 100644 --- a/md/CL/14/CL_0000014.md +++ b/md/CL/14/CL_0000014.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000114.md b/md/CL/14/CL_0000114.md index 1f40004b7e..00832a664a 100644 --- a/md/CL/14/CL_0000114.md +++ b/md/CL/14/CL_0000114.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000214.md b/md/CL/14/CL_0000214.md index b520ce1aa6..5b6da73082 100644 --- a/md/CL/14/CL_0000214.md +++ b/md/CL/14/CL_0000214.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000314.md b/md/CL/14/CL_0000314.md index a5e95a97a7..f67b62cfd1 100644 --- a/md/CL/14/CL_0000314.md +++ b/md/CL/14/CL_0000314.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000514.md b/md/CL/14/CL_0000514.md index 7b0b0f909c..5966d1de74 100644 --- a/md/CL/14/CL_0000514.md +++ b/md/CL/14/CL_0000514.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000614.md b/md/CL/14/CL_0000614.md index fb3a1f5bf7..38dcdcc488 100644 --- a/md/CL/14/CL_0000614.md +++ b/md/CL/14/CL_0000614.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000814.md b/md/CL/14/CL_0000814.md index b88b0929fc..da075f97f6 100644 --- a/md/CL/14/CL_0000814.md +++ b/md/CL/14/CL_0000814.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0000914.md b/md/CL/14/CL_0000914.md index a7d619277c..e79fb8d45a 100644 --- a/md/CL/14/CL_0000914.md +++ b/md/CL/14/CL_0000914.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0001014.md b/md/CL/14/CL_0001014.md index 699ffa525b..d0056479d2 100644 --- a/md/CL/14/CL_0001014.md +++ b/md/CL/14/CL_0001014.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002014.md b/md/CL/14/CL_0002014.md index a0ec333e16..6fa36dd416 100644 --- a/md/CL/14/CL_0002014.md +++ b/md/CL/14/CL_0002014.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002114.md b/md/CL/14/CL_0002114.md index 85edbf1c38..eeb9eb4ca9 100644 --- a/md/CL/14/CL_0002114.md +++ b/md/CL/14/CL_0002114.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002214.md b/md/CL/14/CL_0002214.md index 10edeb9ba2..59e64c9efa 100644 --- a/md/CL/14/CL_0002214.md +++ b/md/CL/14/CL_0002214.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002314.md b/md/CL/14/CL_0002314.md index c0513d2f0f..16500e2d22 100644 --- a/md/CL/14/CL_0002314.md +++ b/md/CL/14/CL_0002314.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002414.md b/md/CL/14/CL_0002414.md index 8d61550e63..d675e2ebf0 100644 --- a/md/CL/14/CL_0002414.md +++ b/md/CL/14/CL_0002414.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002514.md b/md/CL/14/CL_0002514.md index 6feb6498b5..f268c7b72a 100644 --- a/md/CL/14/CL_0002514.md +++ b/md/CL/14/CL_0002514.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0002614.md b/md/CL/14/CL_0002614.md index 5c9cc91b9b..60d856987b 100644 --- a/md/CL/14/CL_0002614.md +++ b/md/CL/14/CL_0002614.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0005014.md b/md/CL/14/CL_0005014.md index 76aeade243..80b6aa42bb 100644 --- a/md/CL/14/CL_0005014.md +++ b/md/CL/14/CL_0005014.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_0007014.md b/md/CL/14/CL_0007014.md index ccb39f0a11..6c2db64927 100644 --- a/md/CL/14/CL_0007014.md +++ b/md/CL/14/CL_0007014.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_1000314.md b/md/CL/14/CL_1000314.md index fdf23a0842..3be16bdd14 100644 --- a/md/CL/14/CL_1000314.md +++ b/md/CL/14/CL_1000314.md @@ -17,7 +17,7 @@ * [gastric goblet cell](../../CL/13/CL_1000313.md) * [part_of](../../BFO/50/BFO_0000050.md) some [cardiac gastric gland](../../UBERON/59/UBERON_0008859.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac gastric gland](../../UBERON/59/UBERON_0008859.md) ## Equivalencies @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_1000414.md b/md/CL/14/CL_1000414.md index 3087ab7b21..51f1535e6c 100644 --- a/md/CL/14/CL_1000414.md +++ b/md/CL/14/CL_1000414.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_1000714.md b/md/CL/14/CL_1000714.md index 47cc63da98..e10c18056d 100644 --- a/md/CL/14/CL_1000714.md +++ b/md/CL/14/CL_1000714.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/14/CL_1001214.md b/md/CL/14/CL_1001214.md index 69bf858ba0..1bc5c5d051 100644 --- a/md/CL/14/CL_1001214.md +++ b/md/CL/14/CL_1001214.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000015.md b/md/CL/15/CL_0000015.md index 1a154c3cb7..a192ffd48b 100644 --- a/md/CL/15/CL_0000015.md +++ b/md/CL/15/CL_0000015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000115.md b/md/CL/15/CL_0000115.md index 2ed1354594..b004125790 100644 --- a/md/CL/15/CL_0000115.md +++ b/md/CL/15/CL_0000115.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000215.md b/md/CL/15/CL_0000215.md index 9bdd45a8b4..9f62361f8b 100644 --- a/md/CL/15/CL_0000215.md +++ b/md/CL/15/CL_0000215.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000315.md b/md/CL/15/CL_0000315.md index a8a5e0a39a..068588e679 100644 --- a/md/CL/15/CL_0000315.md +++ b/md/CL/15/CL_0000315.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000415.md b/md/CL/15/CL_0000415.md index eb41cad849..538aeb4bea 100644 --- a/md/CL/15/CL_0000415.md +++ b/md/CL/15/CL_0000415.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000515.md b/md/CL/15/CL_0000515.md index 0893b91262..bf5b7bd087 100644 --- a/md/CL/15/CL_0000515.md +++ b/md/CL/15/CL_0000515.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000615.md b/md/CL/15/CL_0000615.md index e9a419f3e0..f347664ede 100644 --- a/md/CL/15/CL_0000615.md +++ b/md/CL/15/CL_0000615.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000715.md b/md/CL/15/CL_0000715.md index 71c85c577a..8e6f9f5e19 100644 --- a/md/CL/15/CL_0000715.md +++ b/md/CL/15/CL_0000715.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000815.md b/md/CL/15/CL_0000815.md index 8a1489abcb..dc0e2b6491 100644 --- a/md/CL/15/CL_0000815.md +++ b/md/CL/15/CL_0000815.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0000915.md b/md/CL/15/CL_0000915.md index da46194e19..bf9023310b 100644 --- a/md/CL/15/CL_0000915.md +++ b/md/CL/15/CL_0000915.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0001015.md b/md/CL/15/CL_0001015.md index 2d84f34e55..c41314736c 100644 --- a/md/CL/15/CL_0001015.md +++ b/md/CL/15/CL_0001015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002015.md b/md/CL/15/CL_0002015.md index ac6fbdd3ad..411f18c05b 100644 --- a/md/CL/15/CL_0002015.md +++ b/md/CL/15/CL_0002015.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002115.md b/md/CL/15/CL_0002115.md index 0b48e4140b..858b9ff233 100644 --- a/md/CL/15/CL_0002115.md +++ b/md/CL/15/CL_0002115.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002215.md b/md/CL/15/CL_0002215.md index 32569ef560..3f445f3666 100644 --- a/md/CL/15/CL_0002215.md +++ b/md/CL/15/CL_0002215.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002315.md b/md/CL/15/CL_0002315.md index 8144f5410b..489e8f7fc9 100644 --- a/md/CL/15/CL_0002315.md +++ b/md/CL/15/CL_0002315.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002415.md b/md/CL/15/CL_0002415.md index caa82724f0..73868c1642 100644 --- a/md/CL/15/CL_0002415.md +++ b/md/CL/15/CL_0002415.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002515.md b/md/CL/15/CL_0002515.md index b4df7edc90..1649807e1a 100644 --- a/md/CL/15/CL_0002515.md +++ b/md/CL/15/CL_0002515.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0002615.md b/md/CL/15/CL_0002615.md index 27530ef5dd..0bd3294c0e 100644 --- a/md/CL/15/CL_0002615.md +++ b/md/CL/15/CL_0002615.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0005015.md b/md/CL/15/CL_0005015.md index 9b046aa7a5..8139341886 100644 --- a/md/CL/15/CL_0005015.md +++ b/md/CL/15/CL_0005015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_0007015.md b/md/CL/15/CL_0007015.md index 07a7c3ebaa..75848912eb 100644 --- a/md/CL/15/CL_0007015.md +++ b/md/CL/15/CL_0007015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_1000315.md b/md/CL/15/CL_1000315.md index 00016efa07..c1eba251bb 100644 --- a/md/CL/15/CL_1000315.md +++ b/md/CL/15/CL_1000315.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_1000415.md b/md/CL/15/CL_1000415.md index ebc2684de7..80b761e2bb 100644 --- a/md/CL/15/CL_1000415.md +++ b/md/CL/15/CL_1000415.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_1000615.md b/md/CL/15/CL_1000615.md index 292a50d947..038696eb14 100644 --- a/md/CL/15/CL_1000615.md +++ b/md/CL/15/CL_1000615.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/15/CL_1000715.md b/md/CL/15/CL_1000715.md index 8c9ea640b2..eb38ad546c 100644 --- a/md/CL/15/CL_1000715.md +++ b/md/CL/15/CL_1000715.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000016.md b/md/CL/16/CL_0000016.md index c0a9bbb1b9..efb4c5f491 100644 --- a/md/CL/16/CL_0000016.md +++ b/md/CL/16/CL_0000016.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000116.md b/md/CL/16/CL_0000116.md index 32a2e679f4..eba4008cae 100644 --- a/md/CL/16/CL_0000116.md +++ b/md/CL/16/CL_0000116.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000216.md b/md/CL/16/CL_0000216.md index f38cffb71b..70f5956cdc 100644 --- a/md/CL/16/CL_0000216.md +++ b/md/CL/16/CL_0000216.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000416.md b/md/CL/16/CL_0000416.md index e316f9fecd..a13ad0f6e4 100644 --- a/md/CL/16/CL_0000416.md +++ b/md/CL/16/CL_0000416.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000516.md b/md/CL/16/CL_0000516.md index eadace55ec..d2c46acd94 100644 --- a/md/CL/16/CL_0000516.md +++ b/md/CL/16/CL_0000516.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000716.md b/md/CL/16/CL_0000716.md index ac3eb2797a..4d40305886 100644 --- a/md/CL/16/CL_0000716.md +++ b/md/CL/16/CL_0000716.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000816.md b/md/CL/16/CL_0000816.md index 774e3965c8..c63a255384 100644 --- a/md/CL/16/CL_0000816.md +++ b/md/CL/16/CL_0000816.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0000916.md b/md/CL/16/CL_0000916.md index 92a6bc2317..c27ff5f3fb 100644 --- a/md/CL/16/CL_0000916.md +++ b/md/CL/16/CL_0000916.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0001016.md b/md/CL/16/CL_0001016.md index 3fcd95a3ca..c01ebf7e94 100644 --- a/md/CL/16/CL_0001016.md +++ b/md/CL/16/CL_0001016.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002016.md b/md/CL/16/CL_0002016.md index 93e69d1191..91070e5437 100644 --- a/md/CL/16/CL_0002016.md +++ b/md/CL/16/CL_0002016.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002116.md b/md/CL/16/CL_0002116.md index 03fc710115..5c95e959e3 100644 --- a/md/CL/16/CL_0002116.md +++ b/md/CL/16/CL_0002116.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002216.md b/md/CL/16/CL_0002216.md index 997ad97e9a..dde5b54f00 100644 --- a/md/CL/16/CL_0002216.md +++ b/md/CL/16/CL_0002216.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002316.md b/md/CL/16/CL_0002316.md index 29dc1d4c6c..015fb1526c 100644 --- a/md/CL/16/CL_0002316.md +++ b/md/CL/16/CL_0002316.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002416.md b/md/CL/16/CL_0002416.md index 30285bf6ed..4b54ddf566 100644 --- a/md/CL/16/CL_0002416.md +++ b/md/CL/16/CL_0002416.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002516.md b/md/CL/16/CL_0002516.md index 648593ccae..8d781114d5 100644 --- a/md/CL/16/CL_0002516.md +++ b/md/CL/16/CL_0002516.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0002616.md b/md/CL/16/CL_0002616.md index c4e8136fc9..38af904659 100644 --- a/md/CL/16/CL_0002616.md +++ b/md/CL/16/CL_0002616.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_0007016.md b/md/CL/16/CL_0007016.md index 58e3ac8c61..a97ebb8e04 100644 --- a/md/CL/16/CL_0007016.md +++ b/md/CL/16/CL_0007016.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1000416.md b/md/CL/16/CL_1000416.md index 1d8d66d5ba..bee18a7695 100644 --- a/md/CL/16/CL_1000416.md +++ b/md/CL/16/CL_1000416.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1000616.md b/md/CL/16/CL_1000616.md index 4a0ec14e91..5e29169b06 100644 --- a/md/CL/16/CL_1000616.md +++ b/md/CL/16/CL_1000616.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1000716.md b/md/CL/16/CL_1000716.md index 52587608dd..153282cf58 100644 --- a/md/CL/16/CL_1000716.md +++ b/md/CL/16/CL_1000716.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1001016.md b/md/CL/16/CL_1001016.md index 02ddb411d4..676a1e1f24 100644 --- a/md/CL/16/CL_1001016.md +++ b/md/CL/16/CL_1001016.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1001216.md b/md/CL/16/CL_1001216.md index 4efee2cab5..d722de09a0 100644 --- a/md/CL/16/CL_1001216.md +++ b/md/CL/16/CL_1001216.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/16/CL_1001516.md b/md/CL/16/CL_1001516.md index dd9adb99eb..151f88b317 100644 --- a/md/CL/16/CL_1001516.md +++ b/md/CL/16/CL_1001516.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000017.md b/md/CL/17/CL_0000017.md index b15440a78d..b3df19e941 100644 --- a/md/CL/17/CL_0000017.md +++ b/md/CL/17/CL_0000017.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000117.md b/md/CL/17/CL_0000117.md index 8d3159ba3c..8d336864ce 100644 --- a/md/CL/17/CL_0000117.md +++ b/md/CL/17/CL_0000117.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000217.md b/md/CL/17/CL_0000217.md index 8c1b95a32e..0f60690f5c 100644 --- a/md/CL/17/CL_0000217.md +++ b/md/CL/17/CL_0000217.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000317.md b/md/CL/17/CL_0000317.md index 49c70d3b77..51645b600a 100644 --- a/md/CL/17/CL_0000317.md +++ b/md/CL/17/CL_0000317.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000417.md b/md/CL/17/CL_0000417.md index 22ccb36202..5e5402b99f 100644 --- a/md/CL/17/CL_0000417.md +++ b/md/CL/17/CL_0000417.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000517.md b/md/CL/17/CL_0000517.md index 6a9a18b4bf..89ac4bfe75 100644 --- a/md/CL/17/CL_0000517.md +++ b/md/CL/17/CL_0000517.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000617.md b/md/CL/17/CL_0000617.md index c11fa19cf1..f6654b4585 100644 --- a/md/CL/17/CL_0000617.md +++ b/md/CL/17/CL_0000617.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000717.md b/md/CL/17/CL_0000717.md index 7c6267adcf..38e7dbd69b 100644 --- a/md/CL/17/CL_0000717.md +++ b/md/CL/17/CL_0000717.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000817.md b/md/CL/17/CL_0000817.md index cc74be8898..b8ad5dc51f 100644 --- a/md/CL/17/CL_0000817.md +++ b/md/CL/17/CL_0000817.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0000917.md b/md/CL/17/CL_0000917.md index 10e5b4bc88..10bb1a7da1 100644 --- a/md/CL/17/CL_0000917.md +++ b/md/CL/17/CL_0000917.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0001017.md b/md/CL/17/CL_0001017.md index aefe10d0e7..e6e8b71d8a 100644 --- a/md/CL/17/CL_0001017.md +++ b/md/CL/17/CL_0001017.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002017.md b/md/CL/17/CL_0002017.md index aab82c26b8..4b779860d0 100644 --- a/md/CL/17/CL_0002017.md +++ b/md/CL/17/CL_0002017.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002117.md b/md/CL/17/CL_0002117.md index c77bc0a0d7..93901579e9 100644 --- a/md/CL/17/CL_0002117.md +++ b/md/CL/17/CL_0002117.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002217.md b/md/CL/17/CL_0002217.md index 66d99dc996..9513a9b903 100644 --- a/md/CL/17/CL_0002217.md +++ b/md/CL/17/CL_0002217.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002317.md b/md/CL/17/CL_0002317.md index 67c8a5f713..023674a436 100644 --- a/md/CL/17/CL_0002317.md +++ b/md/CL/17/CL_0002317.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002417.md b/md/CL/17/CL_0002417.md index 96aaefc8ea..f67d5307be 100644 --- a/md/CL/17/CL_0002417.md +++ b/md/CL/17/CL_0002417.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002517.md b/md/CL/17/CL_0002517.md index 7bbd53d502..b19fef20ef 100644 --- a/md/CL/17/CL_0002517.md +++ b/md/CL/17/CL_0002517.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0002617.md b/md/CL/17/CL_0002617.md index aea6d86ac2..02010cc79b 100644 --- a/md/CL/17/CL_0002617.md +++ b/md/CL/17/CL_0002617.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_0007017.md b/md/CL/17/CL_0007017.md index 6d27f90b93..9749e61506 100644 --- a/md/CL/17/CL_0007017.md +++ b/md/CL/17/CL_0007017.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1000317.md b/md/CL/17/CL_1000317.md index d6863e32c3..d082fe17d5 100644 --- a/md/CL/17/CL_1000317.md +++ b/md/CL/17/CL_1000317.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1000417.md b/md/CL/17/CL_1000417.md index 496a506545..b9bc43017d 100644 --- a/md/CL/17/CL_1000417.md +++ b/md/CL/17/CL_1000417.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1000617.md b/md/CL/17/CL_1000617.md index 563ce0e072..4168628877 100644 --- a/md/CL/17/CL_1000617.md +++ b/md/CL/17/CL_1000617.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1000717.md b/md/CL/17/CL_1000717.md index 93ab18a2b9..6b8e7ab874 100644 --- a/md/CL/17/CL_1000717.md +++ b/md/CL/17/CL_1000717.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1001217.md b/md/CL/17/CL_1001217.md index 6a05de7c40..484555b033 100644 --- a/md/CL/17/CL_1001217.md +++ b/md/CL/17/CL_1001217.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/17/CL_1001517.md b/md/CL/17/CL_1001517.md index 723745dcc5..ec9e466df0 100644 --- a/md/CL/17/CL_1001517.md +++ b/md/CL/17/CL_1001517.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000018.md b/md/CL/18/CL_0000018.md index 6432baaf69..3e31b0c89a 100644 --- a/md/CL/18/CL_0000018.md +++ b/md/CL/18/CL_0000018.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000118.md b/md/CL/18/CL_0000118.md index 03542830f1..a1366233bd 100644 --- a/md/CL/18/CL_0000118.md +++ b/md/CL/18/CL_0000118.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000218.md b/md/CL/18/CL_0000218.md index a121538b7e..8f214c1c1a 100644 --- a/md/CL/18/CL_0000218.md +++ b/md/CL/18/CL_0000218.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000318.md b/md/CL/18/CL_0000318.md index 710e7f5039..5a300c69d6 100644 --- a/md/CL/18/CL_0000318.md +++ b/md/CL/18/CL_0000318.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000418.md b/md/CL/18/CL_0000418.md index 4667d2eebd..a23b07b213 100644 --- a/md/CL/18/CL_0000418.md +++ b/md/CL/18/CL_0000418.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000518.md b/md/CL/18/CL_0000518.md index bde5e68c40..7fe76bbf5b 100644 --- a/md/CL/18/CL_0000518.md +++ b/md/CL/18/CL_0000518.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000618.md b/md/CL/18/CL_0000618.md index 89e14d3095..53eb963fe7 100644 --- a/md/CL/18/CL_0000618.md +++ b/md/CL/18/CL_0000618.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000718.md b/md/CL/18/CL_0000718.md index 04c068101d..2f106b5add 100644 --- a/md/CL/18/CL_0000718.md +++ b/md/CL/18/CL_0000718.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000818.md b/md/CL/18/CL_0000818.md index 4255c02dea..0a463faf82 100644 --- a/md/CL/18/CL_0000818.md +++ b/md/CL/18/CL_0000818.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0000918.md b/md/CL/18/CL_0000918.md index 631b8c34ed..d02db65be6 100644 --- a/md/CL/18/CL_0000918.md +++ b/md/CL/18/CL_0000918.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0001018.md b/md/CL/18/CL_0001018.md index e4a8a3de81..a506b362c5 100644 --- a/md/CL/18/CL_0001018.md +++ b/md/CL/18/CL_0001018.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002018.md b/md/CL/18/CL_0002018.md index 3699c433eb..bab7cbc54a 100644 --- a/md/CL/18/CL_0002018.md +++ b/md/CL/18/CL_0002018.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002118.md b/md/CL/18/CL_0002118.md index 25d87de884..5b67aa8e2a 100644 --- a/md/CL/18/CL_0002118.md +++ b/md/CL/18/CL_0002118.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002218.md b/md/CL/18/CL_0002218.md index 27a20db50f..fb772ab50a 100644 --- a/md/CL/18/CL_0002218.md +++ b/md/CL/18/CL_0002218.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002318.md b/md/CL/18/CL_0002318.md index a68acdf33b..03f024f74b 100644 --- a/md/CL/18/CL_0002318.md +++ b/md/CL/18/CL_0002318.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002418.md b/md/CL/18/CL_0002418.md index 575a25e2de..371db31c22 100644 --- a/md/CL/18/CL_0002418.md +++ b/md/CL/18/CL_0002418.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002518.md b/md/CL/18/CL_0002518.md index 225be081cc..e2260937b0 100644 --- a/md/CL/18/CL_0002518.md +++ b/md/CL/18/CL_0002518.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0002618.md b/md/CL/18/CL_0002618.md index ee353ff658..e77b90637c 100644 --- a/md/CL/18/CL_0002618.md +++ b/md/CL/18/CL_0002618.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0005018.md b/md/CL/18/CL_0005018.md index 74ad5438f4..b2d3aaa42d 100644 --- a/md/CL/18/CL_0005018.md +++ b/md/CL/18/CL_0005018.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_0007018.md b/md/CL/18/CL_0007018.md index 89587f0e4e..7c5d803b62 100644 --- a/md/CL/18/CL_0007018.md +++ b/md/CL/18/CL_0007018.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_1000318.md b/md/CL/18/CL_1000318.md index 97a9d671e9..0612a13b31 100644 --- a/md/CL/18/CL_1000318.md +++ b/md/CL/18/CL_1000318.md @@ -16,12 +16,12 @@ ## Superclasses * [small intestine goblet cell](../../CL/95/CL_1000495.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) + * [goblet cell](../../CL/60/CL_0000160.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_1000418.md b/md/CL/18/CL_1000418.md index 7ad68a63c1..734210d143 100644 --- a/md/CL/18/CL_1000418.md +++ b/md/CL/18/CL_1000418.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_1000618.md b/md/CL/18/CL_1000618.md index b64bb59247..f8dc2be08f 100644 --- a/md/CL/18/CL_1000618.md +++ b/md/CL/18/CL_1000618.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_1000718.md b/md/CL/18/CL_1000718.md index a847ae1009..5235ec7e89 100644 --- a/md/CL/18/CL_1000718.md +++ b/md/CL/18/CL_1000718.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/18/CL_1001318.md b/md/CL/18/CL_1001318.md index 41000e3b8f..3989108a70 100644 --- a/md/CL/18/CL_1001318.md +++ b/md/CL/18/CL_1001318.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000019.md b/md/CL/19/CL_0000019.md index f4e8e191a0..aa698cb9e7 100644 --- a/md/CL/19/CL_0000019.md +++ b/md/CL/19/CL_0000019.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000119.md b/md/CL/19/CL_0000119.md index 75cdf08d83..074dde4cff 100644 --- a/md/CL/19/CL_0000119.md +++ b/md/CL/19/CL_0000119.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000219.md b/md/CL/19/CL_0000219.md index 9a1fec82b5..f137ec288b 100644 --- a/md/CL/19/CL_0000219.md +++ b/md/CL/19/CL_0000219.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000319.md b/md/CL/19/CL_0000319.md index 1e30a7524b..917d914a38 100644 --- a/md/CL/19/CL_0000319.md +++ b/md/CL/19/CL_0000319.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000419.md b/md/CL/19/CL_0000419.md index 80fd3a286f..1d048d5243 100644 --- a/md/CL/19/CL_0000419.md +++ b/md/CL/19/CL_0000419.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000519.md b/md/CL/19/CL_0000519.md index 3a4966a430..3caa4bf08f 100644 --- a/md/CL/19/CL_0000519.md +++ b/md/CL/19/CL_0000519.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000619.md b/md/CL/19/CL_0000619.md index d0c102354c..08428fff51 100644 --- a/md/CL/19/CL_0000619.md +++ b/md/CL/19/CL_0000619.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000719.md b/md/CL/19/CL_0000719.md index 12c900e432..a671592ef6 100644 --- a/md/CL/19/CL_0000719.md +++ b/md/CL/19/CL_0000719.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000819.md b/md/CL/19/CL_0000819.md index ccb8b2628a..3b855bdc60 100644 --- a/md/CL/19/CL_0000819.md +++ b/md/CL/19/CL_0000819.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0000919.md b/md/CL/19/CL_0000919.md index 1e54ff8cf2..a361f0c030 100644 --- a/md/CL/19/CL_0000919.md +++ b/md/CL/19/CL_0000919.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0001019.md b/md/CL/19/CL_0001019.md index 4cbc48bade..8c8f749a3c 100644 --- a/md/CL/19/CL_0001019.md +++ b/md/CL/19/CL_0001019.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [CD115-positive monocyte](../../CL/22/CL_0001022.md)or[common dendritic progenitor](../../CL/29/CL_0001029.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002019.md b/md/CL/19/CL_0002019.md index 170c403c47..a5ce305f8a 100644 --- a/md/CL/19/CL_0002019.md +++ b/md/CL/19/CL_0002019.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002119.md b/md/CL/19/CL_0002119.md index e4a5d3620d..72a62a7e46 100644 --- a/md/CL/19/CL_0002119.md +++ b/md/CL/19/CL_0002119.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002219.md b/md/CL/19/CL_0002219.md index e8ff54b7ec..2f512e32fc 100644 --- a/md/CL/19/CL_0002219.md +++ b/md/CL/19/CL_0002219.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002319.md b/md/CL/19/CL_0002319.md index 76b6ff4377..f1225c3281 100644 --- a/md/CL/19/CL_0002319.md +++ b/md/CL/19/CL_0002319.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002419.md b/md/CL/19/CL_0002419.md index 72e609c832..29ac01c6db 100644 --- a/md/CL/19/CL_0002419.md +++ b/md/CL/19/CL_0002419.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002519.md b/md/CL/19/CL_0002519.md index 0078f0ccfd..1060915967 100644 --- a/md/CL/19/CL_0002519.md +++ b/md/CL/19/CL_0002519.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0002619.md b/md/CL/19/CL_0002619.md index cb8f1e2bb4..a19c6d1898 100644 --- a/md/CL/19/CL_0002619.md +++ b/md/CL/19/CL_0002619.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0005019.md b/md/CL/19/CL_0005019.md index d7ad353b09..e280f43232 100644 --- a/md/CL/19/CL_0005019.md +++ b/md/CL/19/CL_0005019.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_0007019.md b/md/CL/19/CL_0007019.md index ec666953af..d53f6d79c9 100644 --- a/md/CL/19/CL_0007019.md +++ b/md/CL/19/CL_0007019.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_1000419.md b/md/CL/19/CL_1000419.md index bde3ac2102..05f9e62517 100644 --- a/md/CL/19/CL_1000419.md +++ b/md/CL/19/CL_1000419.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_1000719.md b/md/CL/19/CL_1000719.md index 18005966f0..5ef542b59c 100644 --- a/md/CL/19/CL_1000719.md +++ b/md/CL/19/CL_1000719.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/19/CL_1001319.md b/md/CL/19/CL_1001319.md index d535dffe64..d56406f72e 100644 --- a/md/CL/19/CL_1001319.md +++ b/md/CL/19/CL_1001319.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000020.md b/md/CL/20/CL_0000020.md index d9c0f18708..bd24410e0c 100644 --- a/md/CL/20/CL_0000020.md +++ b/md/CL/20/CL_0000020.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000120.md b/md/CL/20/CL_0000120.md index b242a6a3b2..09f0426fa7 100644 --- a/md/CL/20/CL_0000120.md +++ b/md/CL/20/CL_0000120.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000420.md b/md/CL/20/CL_0000420.md index ff12f8154e..54c993a32d 100644 --- a/md/CL/20/CL_0000420.md +++ b/md/CL/20/CL_0000420.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000520.md b/md/CL/20/CL_0000520.md index 3273d24c3f..643e3b93af 100644 --- a/md/CL/20/CL_0000520.md +++ b/md/CL/20/CL_0000520.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000720.md b/md/CL/20/CL_0000720.md index 694ad2a09b..9f3a8b11eb 100644 --- a/md/CL/20/CL_0000720.md +++ b/md/CL/20/CL_0000720.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000820.md b/md/CL/20/CL_0000820.md index e88ec2c5ce..4d61ce4e05 100644 --- a/md/CL/20/CL_0000820.md +++ b/md/CL/20/CL_0000820.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0000920.md b/md/CL/20/CL_0000920.md index 24cdf3d124..3337aa1545 100644 --- a/md/CL/20/CL_0000920.md +++ b/md/CL/20/CL_0000920.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0001020.md b/md/CL/20/CL_0001020.md index 0a4c57f2c7..8ca57de0b7 100644 --- a/md/CL/20/CL_0001020.md +++ b/md/CL/20/CL_0001020.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002020.md b/md/CL/20/CL_0002020.md index 4f687b891b..dcca218dd8 100644 --- a/md/CL/20/CL_0002020.md +++ b/md/CL/20/CL_0002020.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002120.md b/md/CL/20/CL_0002120.md index 3a1744629a..5866833acf 100644 --- a/md/CL/20/CL_0002120.md +++ b/md/CL/20/CL_0002120.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002220.md b/md/CL/20/CL_0002220.md index a111e31434..54dd77658f 100644 --- a/md/CL/20/CL_0002220.md +++ b/md/CL/20/CL_0002220.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002320.md b/md/CL/20/CL_0002320.md index 97946ab541..1082b54049 100644 --- a/md/CL/20/CL_0002320.md +++ b/md/CL/20/CL_0002320.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002420.md b/md/CL/20/CL_0002420.md index a9b7737455..a3f0e6f959 100644 --- a/md/CL/20/CL_0002420.md +++ b/md/CL/20/CL_0002420.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002520.md b/md/CL/20/CL_0002520.md index be47996c1c..de31a06631 100644 --- a/md/CL/20/CL_0002520.md +++ b/md/CL/20/CL_0002520.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0002620.md b/md/CL/20/CL_0002620.md index 1fadc17e85..279d7f186e 100644 --- a/md/CL/20/CL_0002620.md +++ b/md/CL/20/CL_0002620.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0005020.md b/md/CL/20/CL_0005020.md index 802894595c..dc53aba1f1 100644 --- a/md/CL/20/CL_0005020.md +++ b/md/CL/20/CL_0005020.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_0007020.md b/md/CL/20/CL_0007020.md index 41bd4e0083..9950f90f6b 100644 --- a/md/CL/20/CL_0007020.md +++ b/md/CL/20/CL_0007020.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_1000320.md b/md/CL/20/CL_1000320.md index 845f67aa01..a84656be14 100644 --- a/md/CL/20/CL_1000320.md +++ b/md/CL/20/CL_1000320.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_1000420.md b/md/CL/20/CL_1000420.md index 6c72c002da..22d634d8bb 100644 --- a/md/CL/20/CL_1000420.md +++ b/md/CL/20/CL_1000420.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_1000720.md b/md/CL/20/CL_1000720.md index a5f40cd03e..cdc1626295 100644 --- a/md/CL/20/CL_1000720.md +++ b/md/CL/20/CL_1000720.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_1001220.md b/md/CL/20/CL_1001220.md index 15aaf3a783..2641c09af5 100644 --- a/md/CL/20/CL_1001220.md +++ b/md/CL/20/CL_1001220.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/20/CL_1001320.md b/md/CL/20/CL_1001320.md index a4a2c060f8..46d7e51d6d 100644 --- a/md/CL/20/CL_1001320.md +++ b/md/CL/20/CL_1001320.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000021.md b/md/CL/21/CL_0000021.md index 945eb44b3d..897c87e1ed 100644 --- a/md/CL/21/CL_0000021.md +++ b/md/CL/21/CL_0000021.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000121.md b/md/CL/21/CL_0000121.md index b608ad26fe..4bf5949e90 100644 --- a/md/CL/21/CL_0000121.md +++ b/md/CL/21/CL_0000121.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000221.md b/md/CL/21/CL_0000221.md index f327885dce..f0fb9a7108 100644 --- a/md/CL/21/CL_0000221.md +++ b/md/CL/21/CL_0000221.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000321.md b/md/CL/21/CL_0000321.md index e55b239fd4..815ca3f543 100644 --- a/md/CL/21/CL_0000321.md +++ b/md/CL/21/CL_0000321.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000421.md b/md/CL/21/CL_0000421.md index 606014bf21..1a1a6b9670 100644 --- a/md/CL/21/CL_0000421.md +++ b/md/CL/21/CL_0000421.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000521.md b/md/CL/21/CL_0000521.md index 1d32974003..9be52849f7 100644 --- a/md/CL/21/CL_0000521.md +++ b/md/CL/21/CL_0000521.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000621.md b/md/CL/21/CL_0000621.md index 6efd824dd1..b8ba4e08fb 100644 --- a/md/CL/21/CL_0000621.md +++ b/md/CL/21/CL_0000621.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000721.md b/md/CL/21/CL_0000721.md index 9ac6487dbc..ce9e47d52e 100644 --- a/md/CL/21/CL_0000721.md +++ b/md/CL/21/CL_0000721.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000821.md b/md/CL/21/CL_0000821.md index ec6ac946e7..8efdd2368f 100644 --- a/md/CL/21/CL_0000821.md +++ b/md/CL/21/CL_0000821.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0000921.md b/md/CL/21/CL_0000921.md index daba025923..9364dbcb58 100644 --- a/md/CL/21/CL_0000921.md +++ b/md/CL/21/CL_0000921.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0001021.md b/md/CL/21/CL_0001021.md index 094ffdb6dd..c46eb0b59f 100644 --- a/md/CL/21/CL_0001021.md +++ b/md/CL/21/CL_0001021.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002021.md b/md/CL/21/CL_0002021.md index 2a95f048bc..d7cc49fa2a 100644 --- a/md/CL/21/CL_0002021.md +++ b/md/CL/21/CL_0002021.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002121.md b/md/CL/21/CL_0002121.md index 7285f7aa92..aff06f26dc 100644 --- a/md/CL/21/CL_0002121.md +++ b/md/CL/21/CL_0002121.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002221.md b/md/CL/21/CL_0002221.md index 6bd33295f4..c68a5c0bf3 100644 --- a/md/CL/21/CL_0002221.md +++ b/md/CL/21/CL_0002221.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002321.md b/md/CL/21/CL_0002321.md index 8230894091..96558bc150 100644 --- a/md/CL/21/CL_0002321.md +++ b/md/CL/21/CL_0002321.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002421.md b/md/CL/21/CL_0002421.md index 4ba7ff3232..4e381f4e40 100644 --- a/md/CL/21/CL_0002421.md +++ b/md/CL/21/CL_0002421.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002521.md b/md/CL/21/CL_0002521.md index 305aac1a84..3aa23a0eb3 100644 --- a/md/CL/21/CL_0002521.md +++ b/md/CL/21/CL_0002521.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0002621.md b/md/CL/21/CL_0002621.md index 98ab89bec0..2f4bf5aa71 100644 --- a/md/CL/21/CL_0002621.md +++ b/md/CL/21/CL_0002621.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0005021.md b/md/CL/21/CL_0005021.md index 6b46b44dfb..4bea940fac 100644 --- a/md/CL/21/CL_0005021.md +++ b/md/CL/21/CL_0005021.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_0007021.md b/md/CL/21/CL_0007021.md index b3ffb129dd..dcecd5a87b 100644 --- a/md/CL/21/CL_0007021.md +++ b/md/CL/21/CL_0007021.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_1000321.md b/md/CL/21/CL_1000321.md index a820ef8ffa..1b80d9af7d 100644 --- a/md/CL/21/CL_1000321.md +++ b/md/CL/21/CL_1000321.md @@ -16,12 +16,12 @@ ## Superclasses * [large intestine goblet cell](../../CL/20/CL_1000320.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))) + * [goblet cell](../../CL/60/CL_0000160.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_1000721.md b/md/CL/21/CL_1000721.md index 3fc0de866b..b9aae5c705 100644 --- a/md/CL/21/CL_1000721.md +++ b/md/CL/21/CL_1000721.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_1001021.md b/md/CL/21/CL_1001021.md index 6c251086da..959f682a6f 100644 --- a/md/CL/21/CL_1001021.md +++ b/md/CL/21/CL_1001021.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/21/CL_1001221.md b/md/CL/21/CL_1001221.md index ad709bc397..a77b92008d 100644 --- a/md/CL/21/CL_1001221.md +++ b/md/CL/21/CL_1001221.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000022.md b/md/CL/22/CL_0000022.md index 9075960e6e..8f007b7187 100644 --- a/md/CL/22/CL_0000022.md +++ b/md/CL/22/CL_0000022.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000122.md b/md/CL/22/CL_0000122.md index 2a22be15e9..35d487ac8d 100644 --- a/md/CL/22/CL_0000122.md +++ b/md/CL/22/CL_0000122.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000222.md b/md/CL/22/CL_0000222.md index c431ffe55f..bde2bc02ca 100644 --- a/md/CL/22/CL_0000222.md +++ b/md/CL/22/CL_0000222.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000322.md b/md/CL/22/CL_0000322.md index 726dea62c9..0a6af3de75 100644 --- a/md/CL/22/CL_0000322.md +++ b/md/CL/22/CL_0000322.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000422.md b/md/CL/22/CL_0000422.md index 74219a59c7..794ab279b7 100644 --- a/md/CL/22/CL_0000422.md +++ b/md/CL/22/CL_0000422.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000622.md b/md/CL/22/CL_0000622.md index 8574c8ba78..c2a26507b5 100644 --- a/md/CL/22/CL_0000622.md +++ b/md/CL/22/CL_0000622.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000722.md b/md/CL/22/CL_0000722.md index 8c4462b2fc..cf9d99366b 100644 --- a/md/CL/22/CL_0000722.md +++ b/md/CL/22/CL_0000722.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000822.md b/md/CL/22/CL_0000822.md index 414770e3be..ab12ee5a91 100644 --- a/md/CL/22/CL_0000822.md +++ b/md/CL/22/CL_0000822.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0000922.md b/md/CL/22/CL_0000922.md index 336fc2b0e0..e71d337184 100644 --- a/md/CL/22/CL_0000922.md +++ b/md/CL/22/CL_0000922.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0001022.md b/md/CL/22/CL_0001022.md index d87166d1ba..ba05cb38da 100644 --- a/md/CL/22/CL_0001022.md +++ b/md/CL/22/CL_0001022.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002022.md b/md/CL/22/CL_0002022.md index c022b12eaf..153d585ad2 100644 --- a/md/CL/22/CL_0002022.md +++ b/md/CL/22/CL_0002022.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002122.md b/md/CL/22/CL_0002122.md index 967c75fbb9..3916c0c3f1 100644 --- a/md/CL/22/CL_0002122.md +++ b/md/CL/22/CL_0002122.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002222.md b/md/CL/22/CL_0002222.md index ab70e7b717..71429498f5 100644 --- a/md/CL/22/CL_0002222.md +++ b/md/CL/22/CL_0002222.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002322.md b/md/CL/22/CL_0002322.md index 1cc4c4d7ff..aa96fab168 100644 --- a/md/CL/22/CL_0002322.md +++ b/md/CL/22/CL_0002322.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002422.md b/md/CL/22/CL_0002422.md index 21c9040a51..cc8e032482 100644 --- a/md/CL/22/CL_0002422.md +++ b/md/CL/22/CL_0002422.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002522.md b/md/CL/22/CL_0002522.md index f87a848d78..c617e5db01 100644 --- a/md/CL/22/CL_0002522.md +++ b/md/CL/22/CL_0002522.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0002622.md b/md/CL/22/CL_0002622.md index ef0414f927..da024dda56 100644 --- a/md/CL/22/CL_0002622.md +++ b/md/CL/22/CL_0002622.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0005022.md b/md/CL/22/CL_0005022.md index 74387554d8..17b4ddc757 100644 --- a/md/CL/22/CL_0005022.md +++ b/md/CL/22/CL_0005022.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_0007022.md b/md/CL/22/CL_0007022.md index 192781dc6a..e3b272f361 100644 --- a/md/CL/22/CL_0007022.md +++ b/md/CL/22/CL_0007022.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/22/CL_1000322.md b/md/CL/22/CL_1000322.md index c1a8f94ea4..876e8754ff 100644 --- a/md/CL/22/CL_1000322.md +++ b/md/CL/22/CL_1000322.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000023.md b/md/CL/23/CL_0000023.md index 9ffab88452..e4e5fb5ac0 100644 --- a/md/CL/23/CL_0000023.md +++ b/md/CL/23/CL_0000023.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000123.md b/md/CL/23/CL_0000123.md index 013531e93c..2df178f89c 100644 --- a/md/CL/23/CL_0000123.md +++ b/md/CL/23/CL_0000123.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000223.md b/md/CL/23/CL_0000223.md index 9b32ee34aa..8c98944afe 100644 --- a/md/CL/23/CL_0000223.md +++ b/md/CL/23/CL_0000223.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000323.md b/md/CL/23/CL_0000323.md index d71f58e673..5e004bcb99 100644 --- a/md/CL/23/CL_0000323.md +++ b/md/CL/23/CL_0000323.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000423.md b/md/CL/23/CL_0000423.md index b2046f3eaf..b98eadc2ab 100644 --- a/md/CL/23/CL_0000423.md +++ b/md/CL/23/CL_0000423.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000523.md b/md/CL/23/CL_0000523.md index df38501dc9..1ec1d4421d 100644 --- a/md/CL/23/CL_0000523.md +++ b/md/CL/23/CL_0000523.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000623.md b/md/CL/23/CL_0000623.md index bee7bc88dd..7157adfd95 100644 --- a/md/CL/23/CL_0000623.md +++ b/md/CL/23/CL_0000623.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000723.md b/md/CL/23/CL_0000723.md index a80202983f..ac2c4f3179 100644 --- a/md/CL/23/CL_0000723.md +++ b/md/CL/23/CL_0000723.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000823.md b/md/CL/23/CL_0000823.md index 3fde40debd..46db0aba2c 100644 --- a/md/CL/23/CL_0000823.md +++ b/md/CL/23/CL_0000823.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0000923.md b/md/CL/23/CL_0000923.md index 77b9e716e0..8d3c6b03dc 100644 --- a/md/CL/23/CL_0000923.md +++ b/md/CL/23/CL_0000923.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0001023.md b/md/CL/23/CL_0001023.md index 08933dcf8c..fb2249e962 100644 --- a/md/CL/23/CL_0001023.md +++ b/md/CL/23/CL_0001023.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002023.md b/md/CL/23/CL_0002023.md index cf605be095..3632df2ad1 100644 --- a/md/CL/23/CL_0002023.md +++ b/md/CL/23/CL_0002023.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002123.md b/md/CL/23/CL_0002123.md index a8b6edfa4e..41c5caac4d 100644 --- a/md/CL/23/CL_0002123.md +++ b/md/CL/23/CL_0002123.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002223.md b/md/CL/23/CL_0002223.md index ba2dd9b84c..2aed448e0a 100644 --- a/md/CL/23/CL_0002223.md +++ b/md/CL/23/CL_0002223.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002323.md b/md/CL/23/CL_0002323.md index f8dad9cfa1..1ff2f5169d 100644 --- a/md/CL/23/CL_0002323.md +++ b/md/CL/23/CL_0002323.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002423.md b/md/CL/23/CL_0002423.md index f603fe6ac8..ec5c2b0dea 100644 --- a/md/CL/23/CL_0002423.md +++ b/md/CL/23/CL_0002423.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002523.md b/md/CL/23/CL_0002523.md index ab9e92bc98..118b5b7f40 100644 --- a/md/CL/23/CL_0002523.md +++ b/md/CL/23/CL_0002523.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0002623.md b/md/CL/23/CL_0002623.md index 1030359ab7..82b870214a 100644 --- a/md/CL/23/CL_0002623.md +++ b/md/CL/23/CL_0002623.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0005023.md b/md/CL/23/CL_0005023.md index 129e8f9578..475553fcd8 100644 --- a/md/CL/23/CL_0005023.md +++ b/md/CL/23/CL_0005023.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_0007023.md b/md/CL/23/CL_0007023.md index d91319e578..5722369bef 100644 --- a/md/CL/23/CL_0007023.md +++ b/md/CL/23/CL_0007023.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_1000323.md b/md/CL/23/CL_1000323.md index 25532fb9ad..66877be999 100644 --- a/md/CL/23/CL_1000323.md +++ b/md/CL/23/CL_1000323.md @@ -17,7 +17,7 @@ * [gastric goblet cell](../../CL/13/CL_1000313.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pyloric gastric gland](../../UBERON/61/UBERON_0008861.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pyloric gastric gland](../../UBERON/61/UBERON_0008861.md) ## Equivalencies @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_1001123.md b/md/CL/23/CL_1001123.md index 53dc49bcb3..402b7704af 100644 --- a/md/CL/23/CL_1001123.md +++ b/md/CL/23/CL_1001123.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/23/CL_1001223.md b/md/CL/23/CL_1001223.md index fed1d512d1..5431ac6f0c 100644 --- a/md/CL/23/CL_1001223.md +++ b/md/CL/23/CL_1001223.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000024.md b/md/CL/24/CL_0000024.md index 3d8249856c..eafd0f6cdc 100644 --- a/md/CL/24/CL_0000024.md +++ b/md/CL/24/CL_0000024.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000124.md b/md/CL/24/CL_0000124.md index 617310d552..17d08b6355 100644 --- a/md/CL/24/CL_0000124.md +++ b/md/CL/24/CL_0000124.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000324.md b/md/CL/24/CL_0000324.md index 4e39254804..c3fd0f220f 100644 --- a/md/CL/24/CL_0000324.md +++ b/md/CL/24/CL_0000324.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000424.md b/md/CL/24/CL_0000424.md index 031e622810..87970a0993 100644 --- a/md/CL/24/CL_0000424.md +++ b/md/CL/24/CL_0000424.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000524.md b/md/CL/24/CL_0000524.md index ab00b306f5..444f21f289 100644 --- a/md/CL/24/CL_0000524.md +++ b/md/CL/24/CL_0000524.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000624.md b/md/CL/24/CL_0000624.md index 0d8ab6b40d..c1ac28a2f0 100644 --- a/md/CL/24/CL_0000624.md +++ b/md/CL/24/CL_0000624.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000724.md b/md/CL/24/CL_0000724.md index 2dc0ec1d9b..81e7cd3a4a 100644 --- a/md/CL/24/CL_0000724.md +++ b/md/CL/24/CL_0000724.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000824.md b/md/CL/24/CL_0000824.md index d78d9a5d61..d1f8c73f9f 100644 --- a/md/CL/24/CL_0000824.md +++ b/md/CL/24/CL_0000824.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0000924.md b/md/CL/24/CL_0000924.md index 9d4b1c1c2c..a16da82e63 100644 --- a/md/CL/24/CL_0000924.md +++ b/md/CL/24/CL_0000924.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0001024.md b/md/CL/24/CL_0001024.md index 882bb76d56..ffec963fe0 100644 --- a/md/CL/24/CL_0001024.md +++ b/md/CL/24/CL_0001024.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002024.md b/md/CL/24/CL_0002024.md index 33ad50d74e..685b3436fd 100644 --- a/md/CL/24/CL_0002024.md +++ b/md/CL/24/CL_0002024.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002124.md b/md/CL/24/CL_0002124.md index bb99ed6f35..45d4347351 100644 --- a/md/CL/24/CL_0002124.md +++ b/md/CL/24/CL_0002124.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002224.md b/md/CL/24/CL_0002224.md index d4688e7ac6..762353a015 100644 --- a/md/CL/24/CL_0002224.md +++ b/md/CL/24/CL_0002224.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002324.md b/md/CL/24/CL_0002324.md index 6c82c23795..61ee5ce73b 100644 --- a/md/CL/24/CL_0002324.md +++ b/md/CL/24/CL_0002324.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002424.md b/md/CL/24/CL_0002424.md index 4502befa8b..8a68c51664 100644 --- a/md/CL/24/CL_0002424.md +++ b/md/CL/24/CL_0002424.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002524.md b/md/CL/24/CL_0002524.md index d772f44655..6c5df0f896 100644 --- a/md/CL/24/CL_0002524.md +++ b/md/CL/24/CL_0002524.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0002624.md b/md/CL/24/CL_0002624.md index 5b30f9271e..c0f7c39602 100644 --- a/md/CL/24/CL_0002624.md +++ b/md/CL/24/CL_0002624.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_0005024.md b/md/CL/24/CL_0005024.md index 8954e5b4ff..f87c566fa6 100644 --- a/md/CL/24/CL_0005024.md +++ b/md/CL/24/CL_0005024.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_1000324.md b/md/CL/24/CL_1000324.md index b407ba0b58..bbae4e471f 100644 --- a/md/CL/24/CL_1000324.md +++ b/md/CL/24/CL_1000324.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_1000424.md b/md/CL/24/CL_1000424.md index cefa067ebe..90197ffebf 100644 --- a/md/CL/24/CL_1000424.md +++ b/md/CL/24/CL_1000424.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_1001124.md b/md/CL/24/CL_1001124.md index 036cf3afc4..f2abb18e2a 100644 --- a/md/CL/24/CL_1001124.md +++ b/md/CL/24/CL_1001124.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/24/CL_1001224.md b/md/CL/24/CL_1001224.md index 9523d1b382..66f01d0ec6 100644 --- a/md/CL/24/CL_1001224.md +++ b/md/CL/24/CL_1001224.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000025.md b/md/CL/25/CL_0000025.md index 5812076672..833bb6e457 100644 --- a/md/CL/25/CL_0000025.md +++ b/md/CL/25/CL_0000025.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000125.md b/md/CL/25/CL_0000125.md index 338baf16f4..f2c4f49996 100644 --- a/md/CL/25/CL_0000125.md +++ b/md/CL/25/CL_0000125.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000225.md b/md/CL/25/CL_0000225.md index abb7cdd3dd..498c6b8706 100644 --- a/md/CL/25/CL_0000225.md +++ b/md/CL/25/CL_0000225.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000325.md b/md/CL/25/CL_0000325.md index a9eae53a20..15faba7226 100644 --- a/md/CL/25/CL_0000325.md +++ b/md/CL/25/CL_0000325.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000425.md b/md/CL/25/CL_0000425.md index 971187e067..ff7bb09886 100644 --- a/md/CL/25/CL_0000425.md +++ b/md/CL/25/CL_0000425.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000525.md b/md/CL/25/CL_0000525.md index b5999f7826..12b7150c3b 100644 --- a/md/CL/25/CL_0000525.md +++ b/md/CL/25/CL_0000525.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000625.md b/md/CL/25/CL_0000625.md index edf1faad72..7b0a790e51 100644 --- a/md/CL/25/CL_0000625.md +++ b/md/CL/25/CL_0000625.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000725.md b/md/CL/25/CL_0000725.md index 3da88cf26b..adc05c1c61 100644 --- a/md/CL/25/CL_0000725.md +++ b/md/CL/25/CL_0000725.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000825.md b/md/CL/25/CL_0000825.md index 99f6d9f088..125b0a5ed1 100644 --- a/md/CL/25/CL_0000825.md +++ b/md/CL/25/CL_0000825.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0000925.md b/md/CL/25/CL_0000925.md index fe0140d4a6..c6d2751c13 100644 --- a/md/CL/25/CL_0000925.md +++ b/md/CL/25/CL_0000925.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0001025.md b/md/CL/25/CL_0001025.md index 1c34d533c8..b7eb821d9f 100644 --- a/md/CL/25/CL_0001025.md +++ b/md/CL/25/CL_0001025.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002025.md b/md/CL/25/CL_0002025.md index d1559dcf93..3083277518 100644 --- a/md/CL/25/CL_0002025.md +++ b/md/CL/25/CL_0002025.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002125.md b/md/CL/25/CL_0002125.md index 174a7f7ccc..4414ef9d9a 100644 --- a/md/CL/25/CL_0002125.md +++ b/md/CL/25/CL_0002125.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002225.md b/md/CL/25/CL_0002225.md index ab47bf5747..1b6d31f112 100644 --- a/md/CL/25/CL_0002225.md +++ b/md/CL/25/CL_0002225.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002325.md b/md/CL/25/CL_0002325.md index 57924ec1bd..809b788d57 100644 --- a/md/CL/25/CL_0002325.md +++ b/md/CL/25/CL_0002325.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002425.md b/md/CL/25/CL_0002425.md index a670bcd8c1..c52d200e94 100644 --- a/md/CL/25/CL_0002425.md +++ b/md/CL/25/CL_0002425.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002525.md b/md/CL/25/CL_0002525.md index c1d998a295..d116028249 100644 --- a/md/CL/25/CL_0002525.md +++ b/md/CL/25/CL_0002525.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0002625.md b/md/CL/25/CL_0002625.md index 6e3dc34438..8c4213ca9e 100644 --- a/md/CL/25/CL_0002625.md +++ b/md/CL/25/CL_0002625.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_0005025.md b/md/CL/25/CL_0005025.md index 9f9beea65b..8384427edc 100644 --- a/md/CL/25/CL_0005025.md +++ b/md/CL/25/CL_0005025.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_1000325.md b/md/CL/25/CL_1000325.md index 47f9e5df40..e5b91e80f7 100644 --- a/md/CL/25/CL_1000325.md +++ b/md/CL/25/CL_1000325.md @@ -17,7 +17,7 @@ * [small intestine goblet cell](../../CL/95/CL_1000495.md) * [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Equivalencies @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_1000425.md b/md/CL/25/CL_1000425.md index 454d4af3ac..4ffb9dd916 100644 --- a/md/CL/25/CL_1000425.md +++ b/md/CL/25/CL_1000425.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/25/CL_1001225.md b/md/CL/25/CL_1001225.md index 855f3dc4bf..fe2131fec2 100644 --- a/md/CL/25/CL_1001225.md +++ b/md/CL/25/CL_1001225.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000026.md b/md/CL/26/CL_0000026.md index ce2f2aa20f..2f87365133 100644 --- a/md/CL/26/CL_0000026.md +++ b/md/CL/26/CL_0000026.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000126.md b/md/CL/26/CL_0000126.md index 005601c575..29184e5e54 100644 --- a/md/CL/26/CL_0000126.md +++ b/md/CL/26/CL_0000126.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000226.md b/md/CL/26/CL_0000226.md index de3574e7f7..307ee13f9a 100644 --- a/md/CL/26/CL_0000226.md +++ b/md/CL/26/CL_0000226.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000326.md b/md/CL/26/CL_0000326.md index 13368c77a0..3be5749c7b 100644 --- a/md/CL/26/CL_0000326.md +++ b/md/CL/26/CL_0000326.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000426.md b/md/CL/26/CL_0000426.md index 74cc681617..a3a3885639 100644 --- a/md/CL/26/CL_0000426.md +++ b/md/CL/26/CL_0000426.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000526.md b/md/CL/26/CL_0000526.md index ad144b2bd1..0204e5874d 100644 --- a/md/CL/26/CL_0000526.md +++ b/md/CL/26/CL_0000526.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000626.md b/md/CL/26/CL_0000626.md index 7ffe9f189a..bedfd5f8ab 100644 --- a/md/CL/26/CL_0000626.md +++ b/md/CL/26/CL_0000626.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000726.md b/md/CL/26/CL_0000726.md index 93bce5cf18..c45b7ebf28 100644 --- a/md/CL/26/CL_0000726.md +++ b/md/CL/26/CL_0000726.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000826.md b/md/CL/26/CL_0000826.md index 3c6f67bc4b..17412ecd93 100644 --- a/md/CL/26/CL_0000826.md +++ b/md/CL/26/CL_0000826.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0000926.md b/md/CL/26/CL_0000926.md index d541af4422..018946f7c3 100644 --- a/md/CL/26/CL_0000926.md +++ b/md/CL/26/CL_0000926.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0001026.md b/md/CL/26/CL_0001026.md index 2e542e73ad..e2d95ba546 100644 --- a/md/CL/26/CL_0001026.md +++ b/md/CL/26/CL_0001026.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002026.md b/md/CL/26/CL_0002026.md index 52ece003ab..501aea2006 100644 --- a/md/CL/26/CL_0002026.md +++ b/md/CL/26/CL_0002026.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002126.md b/md/CL/26/CL_0002126.md index 083a228ef2..e8dfaec5a4 100644 --- a/md/CL/26/CL_0002126.md +++ b/md/CL/26/CL_0002126.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002226.md b/md/CL/26/CL_0002226.md index 013733c560..f20db00aef 100644 --- a/md/CL/26/CL_0002226.md +++ b/md/CL/26/CL_0002226.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002326.md b/md/CL/26/CL_0002326.md index fc6299c21d..1ab058caff 100644 --- a/md/CL/26/CL_0002326.md +++ b/md/CL/26/CL_0002326.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002426.md b/md/CL/26/CL_0002426.md index 51f92dd119..6e3805bdee 100644 --- a/md/CL/26/CL_0002426.md +++ b/md/CL/26/CL_0002426.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002526.md b/md/CL/26/CL_0002526.md index 71c06cd255..d14296b9c6 100644 --- a/md/CL/26/CL_0002526.md +++ b/md/CL/26/CL_0002526.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_0002626.md b/md/CL/26/CL_0002626.md index 98dc7a46c2..ad421277b0 100644 --- a/md/CL/26/CL_0002626.md +++ b/md/CL/26/CL_0002626.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_1000326.md b/md/CL/26/CL_1000326.md index fc0a9899f7..4cbe7cc76d 100644 --- a/md/CL/26/CL_1000326.md +++ b/md/CL/26/CL_1000326.md @@ -17,7 +17,7 @@ * [small intestine goblet cell](../../CL/95/CL_1000495.md) * [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Equivalencies @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_1000426.md b/md/CL/26/CL_1000426.md index d48a28bd1e..85e3149f54 100644 --- a/md/CL/26/CL_1000426.md +++ b/md/CL/26/CL_1000426.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/26/CL_1001126.md b/md/CL/26/CL_1001126.md index 9fb96ead75..652f49475f 100644 --- a/md/CL/26/CL_1001126.md +++ b/md/CL/26/CL_1001126.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000027.md b/md/CL/27/CL_0000027.md index e35132d6ac..9667e901f8 100644 --- a/md/CL/27/CL_0000027.md +++ b/md/CL/27/CL_0000027.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000127.md b/md/CL/27/CL_0000127.md index cfc98e5aa1..ff86df5609 100644 --- a/md/CL/27/CL_0000127.md +++ b/md/CL/27/CL_0000127.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000227.md b/md/CL/27/CL_0000227.md index 85e84dadbd..8b35134547 100644 --- a/md/CL/27/CL_0000227.md +++ b/md/CL/27/CL_0000227.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000327.md b/md/CL/27/CL_0000327.md index 362d49e77c..c8da8851ad 100644 --- a/md/CL/27/CL_0000327.md +++ b/md/CL/27/CL_0000327.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000427.md b/md/CL/27/CL_0000427.md index 0635c993aa..56caa40e30 100644 --- a/md/CL/27/CL_0000427.md +++ b/md/CL/27/CL_0000427.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000527.md b/md/CL/27/CL_0000527.md index 7a7fca3b14..888def394a 100644 --- a/md/CL/27/CL_0000527.md +++ b/md/CL/27/CL_0000527.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000627.md b/md/CL/27/CL_0000627.md index 71d1b46acf..92d4947b96 100644 --- a/md/CL/27/CL_0000627.md +++ b/md/CL/27/CL_0000627.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000727.md b/md/CL/27/CL_0000727.md index 3f73046530..34cf9153a2 100644 --- a/md/CL/27/CL_0000727.md +++ b/md/CL/27/CL_0000727.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000827.md b/md/CL/27/CL_0000827.md index 43ddcd4570..05d4ac4c8b 100644 --- a/md/CL/27/CL_0000827.md +++ b/md/CL/27/CL_0000827.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0000927.md b/md/CL/27/CL_0000927.md index e883b02dce..ddd2203c76 100644 --- a/md/CL/27/CL_0000927.md +++ b/md/CL/27/CL_0000927.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0001027.md b/md/CL/27/CL_0001027.md index ffbf9730e7..5e04100674 100644 --- a/md/CL/27/CL_0001027.md +++ b/md/CL/27/CL_0001027.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002027.md b/md/CL/27/CL_0002027.md index 43ec3e9c5c..bb865569a6 100644 --- a/md/CL/27/CL_0002027.md +++ b/md/CL/27/CL_0002027.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002127.md b/md/CL/27/CL_0002127.md index ca7e0fa671..a4eae7a2cd 100644 --- a/md/CL/27/CL_0002127.md +++ b/md/CL/27/CL_0002127.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002227.md b/md/CL/27/CL_0002227.md index 611a8590ae..67d82437b9 100644 --- a/md/CL/27/CL_0002227.md +++ b/md/CL/27/CL_0002227.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002327.md b/md/CL/27/CL_0002327.md index 986edac418..ab4eb2f828 100644 --- a/md/CL/27/CL_0002327.md +++ b/md/CL/27/CL_0002327.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002427.md b/md/CL/27/CL_0002427.md index c9b6d18534..3066fc2b4a 100644 --- a/md/CL/27/CL_0002427.md +++ b/md/CL/27/CL_0002427.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002527.md b/md/CL/27/CL_0002527.md index 51a12fb8af..1e5570846e 100644 --- a/md/CL/27/CL_0002527.md +++ b/md/CL/27/CL_0002527.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_0002627.md b/md/CL/27/CL_0002627.md index 65e3803818..4a51673d43 100644 --- a/md/CL/27/CL_0002627.md +++ b/md/CL/27/CL_0002627.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_1000327.md b/md/CL/27/CL_1000327.md index 611d110ae0..9e610fde44 100644 --- a/md/CL/27/CL_1000327.md +++ b/md/CL/27/CL_1000327.md @@ -18,7 +18,7 @@ * [large intestine goblet cell](../../CL/20/CL_1000320.md) * [appendix glandular cell](../../CL/85/CL_1001585.md) * [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) - * [part_of](../../BFO/50/BFO_0000050.md) some ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) ## Equivalencies @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_1000427.md b/md/CL/27/CL_1000427.md index d48f808686..b044a6f1de 100644 --- a/md/CL/27/CL_1000427.md +++ b/md/CL/27/CL_1000427.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/27/CL_1001127.md b/md/CL/27/CL_1001127.md index 495152fc87..9592b7c5db 100644 --- a/md/CL/27/CL_1001127.md +++ b/md/CL/27/CL_1001127.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000028.md b/md/CL/28/CL_0000028.md index acaaee4aae..9329d372b2 100644 --- a/md/CL/28/CL_0000028.md +++ b/md/CL/28/CL_0000028.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000128.md b/md/CL/28/CL_0000128.md index 8d7bb56626..3a960bcf02 100644 --- a/md/CL/28/CL_0000128.md +++ b/md/CL/28/CL_0000128.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000228.md b/md/CL/28/CL_0000228.md index c0b02d7ce1..0b20bc5527 100644 --- a/md/CL/28/CL_0000228.md +++ b/md/CL/28/CL_0000228.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000328.md b/md/CL/28/CL_0000328.md index 193abbe55e..1f865768fc 100644 --- a/md/CL/28/CL_0000328.md +++ b/md/CL/28/CL_0000328.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000428.md b/md/CL/28/CL_0000428.md index c282804bc2..0d3878f475 100644 --- a/md/CL/28/CL_0000428.md +++ b/md/CL/28/CL_0000428.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000528.md b/md/CL/28/CL_0000528.md index fe66082f86..0a134fdc31 100644 --- a/md/CL/28/CL_0000528.md +++ b/md/CL/28/CL_0000528.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000628.md b/md/CL/28/CL_0000628.md index 2d8f1ac67e..e2dd35e838 100644 --- a/md/CL/28/CL_0000628.md +++ b/md/CL/28/CL_0000628.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000728.md b/md/CL/28/CL_0000728.md index 79c95d8b9d..1d76b210d3 100644 --- a/md/CL/28/CL_0000728.md +++ b/md/CL/28/CL_0000728.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000828.md b/md/CL/28/CL_0000828.md index ad91232182..32bb231f8a 100644 --- a/md/CL/28/CL_0000828.md +++ b/md/CL/28/CL_0000828.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0000928.md b/md/CL/28/CL_0000928.md index cdfc9be1ea..528a76af0d 100644 --- a/md/CL/28/CL_0000928.md +++ b/md/CL/28/CL_0000928.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0001028.md b/md/CL/28/CL_0001028.md index 8ad9d92660..0148cae941 100644 --- a/md/CL/28/CL_0001028.md +++ b/md/CL/28/CL_0001028.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002028.md b/md/CL/28/CL_0002028.md index 9c09642bfd..e30c01b4af 100644 --- a/md/CL/28/CL_0002028.md +++ b/md/CL/28/CL_0002028.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002128.md b/md/CL/28/CL_0002128.md index d2b0e842af..0a49bf82a1 100644 --- a/md/CL/28/CL_0002128.md +++ b/md/CL/28/CL_0002128.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002228.md b/md/CL/28/CL_0002228.md index a7282c1c0e..c7252f396f 100644 --- a/md/CL/28/CL_0002228.md +++ b/md/CL/28/CL_0002228.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002328.md b/md/CL/28/CL_0002328.md index 065699da0f..85b32d61f5 100644 --- a/md/CL/28/CL_0002328.md +++ b/md/CL/28/CL_0002328.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002428.md b/md/CL/28/CL_0002428.md index c9a5f4f212..6f34f9f097 100644 --- a/md/CL/28/CL_0002428.md +++ b/md/CL/28/CL_0002428.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002528.md b/md/CL/28/CL_0002528.md index f2cf17d979..2c81ebb031 100644 --- a/md/CL/28/CL_0002528.md +++ b/md/CL/28/CL_0002528.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_0002628.md b/md/CL/28/CL_0002628.md index 730aa083f5..fb9beaa4e0 100644 --- a/md/CL/28/CL_0002628.md +++ b/md/CL/28/CL_0002628.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_1000428.md b/md/CL/28/CL_1000428.md index aee16ae770..2bf2847681 100644 --- a/md/CL/28/CL_1000428.md +++ b/md/CL/28/CL_1000428.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/28/CL_1001428.md b/md/CL/28/CL_1001428.md index 9723f7b25e..29309e5bd6 100644 --- a/md/CL/28/CL_1001428.md +++ b/md/CL/28/CL_1001428.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000029.md b/md/CL/29/CL_0000029.md index be4a31ac04..0fb088304a 100644 --- a/md/CL/29/CL_0000029.md +++ b/md/CL/29/CL_0000029.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000129.md b/md/CL/29/CL_0000129.md index 3ba0f7f539..2c5d56e3e9 100644 --- a/md/CL/29/CL_0000129.md +++ b/md/CL/29/CL_0000129.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000329.md b/md/CL/29/CL_0000329.md index 55d2a4d4cd..d8c2d2f76b 100644 --- a/md/CL/29/CL_0000329.md +++ b/md/CL/29/CL_0000329.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000429.md b/md/CL/29/CL_0000429.md index 5696b2a8c6..1ca83460e6 100644 --- a/md/CL/29/CL_0000429.md +++ b/md/CL/29/CL_0000429.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000529.md b/md/CL/29/CL_0000529.md index 9ae3b606d6..65e6859aca 100644 --- a/md/CL/29/CL_0000529.md +++ b/md/CL/29/CL_0000529.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000629.md b/md/CL/29/CL_0000629.md index 0ed8d5a967..2cff5e5ce3 100644 --- a/md/CL/29/CL_0000629.md +++ b/md/CL/29/CL_0000629.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000729.md b/md/CL/29/CL_0000729.md index 42021c6aae..0e708205de 100644 --- a/md/CL/29/CL_0000729.md +++ b/md/CL/29/CL_0000729.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000829.md b/md/CL/29/CL_0000829.md index 1e63da31ec..e9ab6b0f1a 100644 --- a/md/CL/29/CL_0000829.md +++ b/md/CL/29/CL_0000829.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0000929.md b/md/CL/29/CL_0000929.md index 17ba98526f..504e9e33db 100644 --- a/md/CL/29/CL_0000929.md +++ b/md/CL/29/CL_0000929.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0001029.md b/md/CL/29/CL_0001029.md index b4b85a0776..8efc1fc6fc 100644 --- a/md/CL/29/CL_0001029.md +++ b/md/CL/29/CL_0001029.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002029.md b/md/CL/29/CL_0002029.md index 7cb29a0118..777cca1c9d 100644 --- a/md/CL/29/CL_0002029.md +++ b/md/CL/29/CL_0002029.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002129.md b/md/CL/29/CL_0002129.md index 4545322fa3..52b479de32 100644 --- a/md/CL/29/CL_0002129.md +++ b/md/CL/29/CL_0002129.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002229.md b/md/CL/29/CL_0002229.md index fd68723bed..7bb86c7560 100644 --- a/md/CL/29/CL_0002229.md +++ b/md/CL/29/CL_0002229.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002329.md b/md/CL/29/CL_0002329.md index 44c51684ed..7bf874fa8c 100644 --- a/md/CL/29/CL_0002329.md +++ b/md/CL/29/CL_0002329.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002429.md b/md/CL/29/CL_0002429.md index bf7b80ee97..541fb8b982 100644 --- a/md/CL/29/CL_0002429.md +++ b/md/CL/29/CL_0002429.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002529.md b/md/CL/29/CL_0002529.md index 0d95b6b86a..01565d86f0 100644 --- a/md/CL/29/CL_0002529.md +++ b/md/CL/29/CL_0002529.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_0002629.md b/md/CL/29/CL_0002629.md index af18687bc6..572dac4226 100644 --- a/md/CL/29/CL_0002629.md +++ b/md/CL/29/CL_0002629.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/29/CL_1000329.md b/md/CL/29/CL_1000329.md index f69248a7ad..66b9424d98 100644 --- a/md/CL/29/CL_1000329.md +++ b/md/CL/29/CL_1000329.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000030.md b/md/CL/30/CL_0000030.md index c70708e5ed..c03f9e5f4e 100644 --- a/md/CL/30/CL_0000030.md +++ b/md/CL/30/CL_0000030.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000130.md b/md/CL/30/CL_0000130.md index b9968c44ee..8d5a97e00f 100644 --- a/md/CL/30/CL_0000130.md +++ b/md/CL/30/CL_0000130.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000430.md b/md/CL/30/CL_0000430.md index 7408231bc9..5bd1b71258 100644 --- a/md/CL/30/CL_0000430.md +++ b/md/CL/30/CL_0000430.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000530.md b/md/CL/30/CL_0000530.md index 66c723972c..26e566829a 100644 --- a/md/CL/30/CL_0000530.md +++ b/md/CL/30/CL_0000530.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000630.md b/md/CL/30/CL_0000630.md index c40c352c3a..10201f704b 100644 --- a/md/CL/30/CL_0000630.md +++ b/md/CL/30/CL_0000630.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000730.md b/md/CL/30/CL_0000730.md index c7ad45cea3..f331dabae3 100644 --- a/md/CL/30/CL_0000730.md +++ b/md/CL/30/CL_0000730.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000830.md b/md/CL/30/CL_0000830.md index 188e9548a7..b0bcb7d6d2 100644 --- a/md/CL/30/CL_0000830.md +++ b/md/CL/30/CL_0000830.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0000930.md b/md/CL/30/CL_0000930.md index 01aaa6235c..f77b7f7260 100644 --- a/md/CL/30/CL_0000930.md +++ b/md/CL/30/CL_0000930.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0001030.md b/md/CL/30/CL_0001030.md index 71ba0a87f3..5dbdaa9383 100644 --- a/md/CL/30/CL_0001030.md +++ b/md/CL/30/CL_0001030.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [Kit-positive, CD34-positive common myeloid progenitor](../../CL/23/CL_0001023.md)or[Kit-positive, Sca1-positive common lymphoid progenitor](../../CL/25/CL_0001025.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002030.md b/md/CL/30/CL_0002030.md index ba5aa4855d..a78d99b702 100644 --- a/md/CL/30/CL_0002030.md +++ b/md/CL/30/CL_0002030.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002130.md b/md/CL/30/CL_0002130.md index 5138b91e03..e0da3ff8dc 100644 --- a/md/CL/30/CL_0002130.md +++ b/md/CL/30/CL_0002130.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002330.md b/md/CL/30/CL_0002330.md index db9b6de7cc..62064dcb9f 100644 --- a/md/CL/30/CL_0002330.md +++ b/md/CL/30/CL_0002330.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002430.md b/md/CL/30/CL_0002430.md index 3f72dbc495..dd5affe1a3 100644 --- a/md/CL/30/CL_0002430.md +++ b/md/CL/30/CL_0002430.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002530.md b/md/CL/30/CL_0002530.md index 26b30c8d47..0f329db625 100644 --- a/md/CL/30/CL_0002530.md +++ b/md/CL/30/CL_0002530.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_0002630.md b/md/CL/30/CL_0002630.md index bfd8abb29a..9273c5c3d3 100644 --- a/md/CL/30/CL_0002630.md +++ b/md/CL/30/CL_0002630.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_1000330.md b/md/CL/30/CL_1000330.md index d47deee83f..c00caedefd 100644 --- a/md/CL/30/CL_1000330.md +++ b/md/CL/30/CL_1000330.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/30/CL_1001430.md b/md/CL/30/CL_1001430.md index 9c0ef4e6e3..c6aec0c769 100644 --- a/md/CL/30/CL_1001430.md +++ b/md/CL/30/CL_1001430.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000031.md b/md/CL/31/CL_0000031.md index a9214b6698..9ae3ab65cf 100644 --- a/md/CL/31/CL_0000031.md +++ b/md/CL/31/CL_0000031.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000131.md b/md/CL/31/CL_0000131.md index dbb12b8479..097ac9b2ff 100644 --- a/md/CL/31/CL_0000131.md +++ b/md/CL/31/CL_0000131.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000431.md b/md/CL/31/CL_0000431.md index 34d021fc40..c9a4f9ad0f 100644 --- a/md/CL/31/CL_0000431.md +++ b/md/CL/31/CL_0000431.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000531.md b/md/CL/31/CL_0000531.md index caed02806b..eb27f0ed2d 100644 --- a/md/CL/31/CL_0000531.md +++ b/md/CL/31/CL_0000531.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000631.md b/md/CL/31/CL_0000631.md index 97b0e43897..778b033106 100644 --- a/md/CL/31/CL_0000631.md +++ b/md/CL/31/CL_0000631.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000731.md b/md/CL/31/CL_0000731.md index a6278e523f..a283b25075 100644 --- a/md/CL/31/CL_0000731.md +++ b/md/CL/31/CL_0000731.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000831.md b/md/CL/31/CL_0000831.md index 10a1a98a45..b24571e668 100644 --- a/md/CL/31/CL_0000831.md +++ b/md/CL/31/CL_0000831.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0000931.md b/md/CL/31/CL_0000931.md index cc3eae994e..f61e82eeb5 100644 --- a/md/CL/31/CL_0000931.md +++ b/md/CL/31/CL_0000931.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0001031.md b/md/CL/31/CL_0001031.md index ab89dd91e6..fc052f8aa4 100644 --- a/md/CL/31/CL_0001031.md +++ b/md/CL/31/CL_0001031.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002031.md b/md/CL/31/CL_0002031.md index 00858d8bc9..3516822fd1 100644 --- a/md/CL/31/CL_0002031.md +++ b/md/CL/31/CL_0002031.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002131.md b/md/CL/31/CL_0002131.md index 9e400abee0..fa24b81ebc 100644 --- a/md/CL/31/CL_0002131.md +++ b/md/CL/31/CL_0002131.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002231.md b/md/CL/31/CL_0002231.md index 300865729a..5f2ab0c752 100644 --- a/md/CL/31/CL_0002231.md +++ b/md/CL/31/CL_0002231.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002431.md b/md/CL/31/CL_0002431.md index 44be33ce0c..d16b056634 100644 --- a/md/CL/31/CL_0002431.md +++ b/md/CL/31/CL_0002431.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002531.md b/md/CL/31/CL_0002531.md index 2107a75aa6..f1905ca094 100644 --- a/md/CL/31/CL_0002531.md +++ b/md/CL/31/CL_0002531.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_0002631.md b/md/CL/31/CL_0002631.md index 7be41065f0..017daa4e9c 100644 --- a/md/CL/31/CL_0002631.md +++ b/md/CL/31/CL_0002631.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_1000331.md b/md/CL/31/CL_1000331.md index f308653f0a..e645952bb4 100644 --- a/md/CL/31/CL_1000331.md +++ b/md/CL/31/CL_1000331.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_1001131.md b/md/CL/31/CL_1001131.md index 26b89c8a9c..0be3678c85 100644 --- a/md/CL/31/CL_1001131.md +++ b/md/CL/31/CL_1001131.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/31/CL_1001431.md b/md/CL/31/CL_1001431.md index d9ad52071a..1df61a8806 100644 --- a/md/CL/31/CL_1001431.md +++ b/md/CL/31/CL_1001431.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000032.md b/md/CL/32/CL_0000032.md index 6ce56b34c2..d463d1f4f3 100644 --- a/md/CL/32/CL_0000032.md +++ b/md/CL/32/CL_0000032.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000132.md b/md/CL/32/CL_0000132.md index bbefb08a6f..293991aada 100644 --- a/md/CL/32/CL_0000132.md +++ b/md/CL/32/CL_0000132.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000232.md b/md/CL/32/CL_0000232.md index 4ff0a309b5..2cc192987e 100644 --- a/md/CL/32/CL_0000232.md +++ b/md/CL/32/CL_0000232.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000432.md b/md/CL/32/CL_0000432.md index 8c43f668b9..b69f72260a 100644 --- a/md/CL/32/CL_0000432.md +++ b/md/CL/32/CL_0000432.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000532.md b/md/CL/32/CL_0000532.md index 806f5f2499..c3f6abb4fc 100644 --- a/md/CL/32/CL_0000532.md +++ b/md/CL/32/CL_0000532.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000632.md b/md/CL/32/CL_0000632.md index 1dde6ae2f0..b68d961538 100644 --- a/md/CL/32/CL_0000632.md +++ b/md/CL/32/CL_0000632.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000732.md b/md/CL/32/CL_0000732.md index 336845b2ba..feac2a7469 100644 --- a/md/CL/32/CL_0000732.md +++ b/md/CL/32/CL_0000732.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000832.md b/md/CL/32/CL_0000832.md index 75a37b9761..ce6bcbd066 100644 --- a/md/CL/32/CL_0000832.md +++ b/md/CL/32/CL_0000832.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0000932.md b/md/CL/32/CL_0000932.md index 896be7323e..1e04212f6b 100644 --- a/md/CL/32/CL_0000932.md +++ b/md/CL/32/CL_0000932.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0001032.md b/md/CL/32/CL_0001032.md index dc37329ea3..140985b028 100644 --- a/md/CL/32/CL_0001032.md +++ b/md/CL/32/CL_0001032.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002032.md b/md/CL/32/CL_0002032.md index 16d7371428..49c3dfa8a9 100644 --- a/md/CL/32/CL_0002032.md +++ b/md/CL/32/CL_0002032.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002132.md b/md/CL/32/CL_0002132.md index 9e6dee70c4..bd29f1dba0 100644 --- a/md/CL/32/CL_0002132.md +++ b/md/CL/32/CL_0002132.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002232.md b/md/CL/32/CL_0002232.md index 5bf0490e25..6e6d6e4f26 100644 --- a/md/CL/32/CL_0002232.md +++ b/md/CL/32/CL_0002232.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002332.md b/md/CL/32/CL_0002332.md index e4706528a4..0244179887 100644 --- a/md/CL/32/CL_0002332.md +++ b/md/CL/32/CL_0002332.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002432.md b/md/CL/32/CL_0002432.md index fc34ed14a9..07bbb68b77 100644 --- a/md/CL/32/CL_0002432.md +++ b/md/CL/32/CL_0002432.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002532.md b/md/CL/32/CL_0002532.md index b8d9895e58..7bd8fb2d88 100644 --- a/md/CL/32/CL_0002532.md +++ b/md/CL/32/CL_0002532.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_0002632.md b/md/CL/32/CL_0002632.md index a16824bad8..cdca6e3a1e 100644 --- a/md/CL/32/CL_0002632.md +++ b/md/CL/32/CL_0002632.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_1000332.md b/md/CL/32/CL_1000332.md index a2c71f5c95..6fdb01d886 100644 --- a/md/CL/32/CL_1000332.md +++ b/md/CL/32/CL_1000332.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_1000432.md b/md/CL/32/CL_1000432.md index 093d739d34..3a615ebeba 100644 --- a/md/CL/32/CL_1000432.md +++ b/md/CL/32/CL_1000432.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/32/CL_1001432.md b/md/CL/32/CL_1001432.md index 4d5d28d79d..7ce7bac873 100644 --- a/md/CL/32/CL_1001432.md +++ b/md/CL/32/CL_1001432.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000033.md b/md/CL/33/CL_0000033.md index 2188c14f73..8549058cad 100644 --- a/md/CL/33/CL_0000033.md +++ b/md/CL/33/CL_0000033.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000133.md b/md/CL/33/CL_0000133.md index f83359c138..d4ea5ffe07 100644 --- a/md/CL/33/CL_0000133.md +++ b/md/CL/33/CL_0000133.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000233.md b/md/CL/33/CL_0000233.md index ef7c156066..f49b99057d 100644 --- a/md/CL/33/CL_0000233.md +++ b/md/CL/33/CL_0000233.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000333.md b/md/CL/33/CL_0000333.md index 0cc00d6548..1e95221e22 100644 --- a/md/CL/33/CL_0000333.md +++ b/md/CL/33/CL_0000333.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000533.md b/md/CL/33/CL_0000533.md index 02471376ce..3d61040472 100644 --- a/md/CL/33/CL_0000533.md +++ b/md/CL/33/CL_0000533.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000633.md b/md/CL/33/CL_0000633.md index 581e494752..2a40eb720e 100644 --- a/md/CL/33/CL_0000633.md +++ b/md/CL/33/CL_0000633.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000733.md b/md/CL/33/CL_0000733.md index 4a8668aebf..1eaa369522 100644 --- a/md/CL/33/CL_0000733.md +++ b/md/CL/33/CL_0000733.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000833.md b/md/CL/33/CL_0000833.md index 86a33e4b6f..90b4fb3455 100644 --- a/md/CL/33/CL_0000833.md +++ b/md/CL/33/CL_0000833.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0000933.md b/md/CL/33/CL_0000933.md index b9c06041cd..01303624c4 100644 --- a/md/CL/33/CL_0000933.md +++ b/md/CL/33/CL_0000933.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0001033.md b/md/CL/33/CL_0001033.md index af271e62a2..5fbe72b447 100644 --- a/md/CL/33/CL_0001033.md +++ b/md/CL/33/CL_0001033.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002033.md b/md/CL/33/CL_0002033.md index 14f3603cbb..2b2ad17dc4 100644 --- a/md/CL/33/CL_0002033.md +++ b/md/CL/33/CL_0002033.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002133.md b/md/CL/33/CL_0002133.md index 28a25476e1..5bcb1bd44e 100644 --- a/md/CL/33/CL_0002133.md +++ b/md/CL/33/CL_0002133.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002233.md b/md/CL/33/CL_0002233.md index 65ec9526bc..615825d226 100644 --- a/md/CL/33/CL_0002233.md +++ b/md/CL/33/CL_0002233.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002333.md b/md/CL/33/CL_0002333.md index f1dabd9ca4..1739c39f9b 100644 --- a/md/CL/33/CL_0002333.md +++ b/md/CL/33/CL_0002333.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002433.md b/md/CL/33/CL_0002433.md index 901ac1033f..01e06fe245 100644 --- a/md/CL/33/CL_0002433.md +++ b/md/CL/33/CL_0002433.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002533.md b/md/CL/33/CL_0002533.md index 93cbc51a86..c720f63740 100644 --- a/md/CL/33/CL_0002533.md +++ b/md/CL/33/CL_0002533.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_0002633.md b/md/CL/33/CL_0002633.md index af3ccd3766..23345b02e8 100644 --- a/md/CL/33/CL_0002633.md +++ b/md/CL/33/CL_0002633.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_1000333.md b/md/CL/33/CL_1000333.md index f57329479b..f06e8f8393 100644 --- a/md/CL/33/CL_1000333.md +++ b/md/CL/33/CL_1000333.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_1000433.md b/md/CL/33/CL_1000433.md index 08f7e2d063..3580a852d8 100644 --- a/md/CL/33/CL_1000433.md +++ b/md/CL/33/CL_1000433.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_1001033.md b/md/CL/33/CL_1001033.md index 332fb42766..8556e674f3 100644 --- a/md/CL/33/CL_1001033.md +++ b/md/CL/33/CL_1001033.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/33/CL_1001433.md b/md/CL/33/CL_1001433.md index 871f2b29e0..885ed891b0 100644 --- a/md/CL/33/CL_1001433.md +++ b/md/CL/33/CL_1001433.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000034.md b/md/CL/34/CL_0000034.md index cf4b53744f..c34e813e4d 100644 --- a/md/CL/34/CL_0000034.md +++ b/md/CL/34/CL_0000034.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000134.md b/md/CL/34/CL_0000134.md index 868cec35db..d4935d4798 100644 --- a/md/CL/34/CL_0000134.md +++ b/md/CL/34/CL_0000134.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000234.md b/md/CL/34/CL_0000234.md index 6e4e9dbc8f..e9c931bd5b 100644 --- a/md/CL/34/CL_0000234.md +++ b/md/CL/34/CL_0000234.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000334.md b/md/CL/34/CL_0000334.md index 4d176555e6..2b4d82fa44 100644 --- a/md/CL/34/CL_0000334.md +++ b/md/CL/34/CL_0000334.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000434.md b/md/CL/34/CL_0000434.md index ee25260ff2..d0ed93a0bc 100644 --- a/md/CL/34/CL_0000434.md +++ b/md/CL/34/CL_0000434.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000534.md b/md/CL/34/CL_0000534.md index bd8dd554ca..a840dc91bf 100644 --- a/md/CL/34/CL_0000534.md +++ b/md/CL/34/CL_0000534.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000634.md b/md/CL/34/CL_0000634.md index 2fc4574ae0..4d9ec6efe1 100644 --- a/md/CL/34/CL_0000634.md +++ b/md/CL/34/CL_0000634.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000734.md b/md/CL/34/CL_0000734.md index 5506dd5259..df92bd433b 100644 --- a/md/CL/34/CL_0000734.md +++ b/md/CL/34/CL_0000734.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000834.md b/md/CL/34/CL_0000834.md index 5523d2fed5..d4aa229a2a 100644 --- a/md/CL/34/CL_0000834.md +++ b/md/CL/34/CL_0000834.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0000934.md b/md/CL/34/CL_0000934.md index 205ef6320a..8dfa2ec601 100644 --- a/md/CL/34/CL_0000934.md +++ b/md/CL/34/CL_0000934.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0001034.md b/md/CL/34/CL_0001034.md index 3785e1e388..af681d1475 100644 --- a/md/CL/34/CL_0001034.md +++ b/md/CL/34/CL_0001034.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002034.md b/md/CL/34/CL_0002034.md index 0b4b6e4110..c237502068 100644 --- a/md/CL/34/CL_0002034.md +++ b/md/CL/34/CL_0002034.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002134.md b/md/CL/34/CL_0002134.md index 6e9871d901..75cc5eda9d 100644 --- a/md/CL/34/CL_0002134.md +++ b/md/CL/34/CL_0002134.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002234.md b/md/CL/34/CL_0002234.md index 06a2e6b58f..324cf85ca3 100644 --- a/md/CL/34/CL_0002234.md +++ b/md/CL/34/CL_0002234.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002334.md b/md/CL/34/CL_0002334.md index 6fee3a6396..c1890db36e 100644 --- a/md/CL/34/CL_0002334.md +++ b/md/CL/34/CL_0002334.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002434.md b/md/CL/34/CL_0002434.md index fa42a45f9f..cca6ddbbc4 100644 --- a/md/CL/34/CL_0002434.md +++ b/md/CL/34/CL_0002434.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002534.md b/md/CL/34/CL_0002534.md index 403c4ce987..bec0c903fe 100644 --- a/md/CL/34/CL_0002534.md +++ b/md/CL/34/CL_0002534.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_0002634.md b/md/CL/34/CL_0002634.md index ece403a898..88b065598e 100644 --- a/md/CL/34/CL_0002634.md +++ b/md/CL/34/CL_0002634.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_1000334.md b/md/CL/34/CL_1000334.md index 23283a9b86..651876737a 100644 --- a/md/CL/34/CL_1000334.md +++ b/md/CL/34/CL_1000334.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_1000434.md b/md/CL/34/CL_1000434.md index ccf71a03db..04e9c3d1c7 100644 --- a/md/CL/34/CL_1000434.md +++ b/md/CL/34/CL_1000434.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/34/CL_1001434.md b/md/CL/34/CL_1001434.md index 01d3c7291e..eb668abede 100644 --- a/md/CL/34/CL_1001434.md +++ b/md/CL/34/CL_1001434.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000035.md b/md/CL/35/CL_0000035.md index 8be1642aa6..5993287f01 100644 --- a/md/CL/35/CL_0000035.md +++ b/md/CL/35/CL_0000035.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000135.md b/md/CL/35/CL_0000135.md index fc080dac79..5a270887e2 100644 --- a/md/CL/35/CL_0000135.md +++ b/md/CL/35/CL_0000135.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000235.md b/md/CL/35/CL_0000235.md index dd0a42bf09..5a970faca6 100644 --- a/md/CL/35/CL_0000235.md +++ b/md/CL/35/CL_0000235.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000335.md b/md/CL/35/CL_0000335.md index a96d264a11..640bafd91b 100644 --- a/md/CL/35/CL_0000335.md +++ b/md/CL/35/CL_0000335.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000435.md b/md/CL/35/CL_0000435.md index 4cb39f798f..6fad9849f7 100644 --- a/md/CL/35/CL_0000435.md +++ b/md/CL/35/CL_0000435.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000535.md b/md/CL/35/CL_0000535.md index c19efb1607..194d063f51 100644 --- a/md/CL/35/CL_0000535.md +++ b/md/CL/35/CL_0000535.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000635.md b/md/CL/35/CL_0000635.md index 79af910f87..d6cc586234 100644 --- a/md/CL/35/CL_0000635.md +++ b/md/CL/35/CL_0000635.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000735.md b/md/CL/35/CL_0000735.md index 6c14909219..a48844739f 100644 --- a/md/CL/35/CL_0000735.md +++ b/md/CL/35/CL_0000735.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000835.md b/md/CL/35/CL_0000835.md index c999f90b81..f13bacaf33 100644 --- a/md/CL/35/CL_0000835.md +++ b/md/CL/35/CL_0000835.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0000935.md b/md/CL/35/CL_0000935.md index 1e4d20c3b5..49efdd36c0 100644 --- a/md/CL/35/CL_0000935.md +++ b/md/CL/35/CL_0000935.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0001035.md b/md/CL/35/CL_0001035.md index ba7c2185fd..4ba691bdc6 100644 --- a/md/CL/35/CL_0001035.md +++ b/md/CL/35/CL_0001035.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002035.md b/md/CL/35/CL_0002035.md index 118fad16e2..e6d9f0d4b4 100644 --- a/md/CL/35/CL_0002035.md +++ b/md/CL/35/CL_0002035.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002135.md b/md/CL/35/CL_0002135.md index 8d3bd82dc0..57bbac4731 100644 --- a/md/CL/35/CL_0002135.md +++ b/md/CL/35/CL_0002135.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002235.md b/md/CL/35/CL_0002235.md index 95e0c71390..b27ea2bb59 100644 --- a/md/CL/35/CL_0002235.md +++ b/md/CL/35/CL_0002235.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002335.md b/md/CL/35/CL_0002335.md index 0a33b67567..a38f0aa1d6 100644 --- a/md/CL/35/CL_0002335.md +++ b/md/CL/35/CL_0002335.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002435.md b/md/CL/35/CL_0002435.md index bb8304c8cc..7836e9a4a7 100644 --- a/md/CL/35/CL_0002435.md +++ b/md/CL/35/CL_0002435.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002535.md b/md/CL/35/CL_0002535.md index 2c3484b623..ab67d1d6c4 100644 --- a/md/CL/35/CL_0002535.md +++ b/md/CL/35/CL_0002535.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_0002635.md b/md/CL/35/CL_0002635.md index 6f648d49bb..e880169c24 100644 --- a/md/CL/35/CL_0002635.md +++ b/md/CL/35/CL_0002635.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_1000335.md b/md/CL/35/CL_1000335.md index f4ef6c6e56..af9b3836f2 100644 --- a/md/CL/35/CL_1000335.md +++ b/md/CL/35/CL_1000335.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_1000435.md b/md/CL/35/CL_1000435.md index 4682d60997..cda812b3f6 100644 --- a/md/CL/35/CL_1000435.md +++ b/md/CL/35/CL_1000435.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_1001135.md b/md/CL/35/CL_1001135.md index 20c21fa8c0..143f5d72b0 100644 --- a/md/CL/35/CL_1001135.md +++ b/md/CL/35/CL_1001135.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/35/CL_1001435.md b/md/CL/35/CL_1001435.md index 676a9e8199..0303e12723 100644 --- a/md/CL/35/CL_1001435.md +++ b/md/CL/35/CL_1001435.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000036.md b/md/CL/36/CL_0000036.md index 84f0984117..22c31d835b 100644 --- a/md/CL/36/CL_0000036.md +++ b/md/CL/36/CL_0000036.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000136.md b/md/CL/36/CL_0000136.md index 5812878dd0..1d1a5d1ed1 100644 --- a/md/CL/36/CL_0000136.md +++ b/md/CL/36/CL_0000136.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000236.md b/md/CL/36/CL_0000236.md index aa3129fb9c..9b428cf8cf 100644 --- a/md/CL/36/CL_0000236.md +++ b/md/CL/36/CL_0000236.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000336.md b/md/CL/36/CL_0000336.md index 70eeb37dfb..d47770738b 100644 --- a/md/CL/36/CL_0000336.md +++ b/md/CL/36/CL_0000336.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000436.md b/md/CL/36/CL_0000436.md index 5f56601b81..7b67d95ad1 100644 --- a/md/CL/36/CL_0000436.md +++ b/md/CL/36/CL_0000436.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000536.md b/md/CL/36/CL_0000536.md index cb46a4a11f..ead83766a7 100644 --- a/md/CL/36/CL_0000536.md +++ b/md/CL/36/CL_0000536.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000636.md b/md/CL/36/CL_0000636.md index f4d25a89b4..84846ba513 100644 --- a/md/CL/36/CL_0000636.md +++ b/md/CL/36/CL_0000636.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000736.md b/md/CL/36/CL_0000736.md index bde080df18..d86de2afb7 100644 --- a/md/CL/36/CL_0000736.md +++ b/md/CL/36/CL_0000736.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000836.md b/md/CL/36/CL_0000836.md index b229636b4f..d3b13a8be0 100644 --- a/md/CL/36/CL_0000836.md +++ b/md/CL/36/CL_0000836.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0000936.md b/md/CL/36/CL_0000936.md index 9a1dff9504..99dc5ba16f 100644 --- a/md/CL/36/CL_0000936.md +++ b/md/CL/36/CL_0000936.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002036.md b/md/CL/36/CL_0002036.md index 636838e013..3ba4527b71 100644 --- a/md/CL/36/CL_0002036.md +++ b/md/CL/36/CL_0002036.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002136.md b/md/CL/36/CL_0002136.md index a77026d7ad..b665e4d42b 100644 --- a/md/CL/36/CL_0002136.md +++ b/md/CL/36/CL_0002136.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002236.md b/md/CL/36/CL_0002236.md index 14a14c008a..b5aa6b7db3 100644 --- a/md/CL/36/CL_0002236.md +++ b/md/CL/36/CL_0002236.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002336.md b/md/CL/36/CL_0002336.md index a49b76ff8e..42593637c6 100644 --- a/md/CL/36/CL_0002336.md +++ b/md/CL/36/CL_0002336.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002436.md b/md/CL/36/CL_0002436.md index 7f450cc22b..2472d2a2b6 100644 --- a/md/CL/36/CL_0002436.md +++ b/md/CL/36/CL_0002436.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002536.md b/md/CL/36/CL_0002536.md index 511afab7f1..97d1df69ad 100644 --- a/md/CL/36/CL_0002536.md +++ b/md/CL/36/CL_0002536.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_0002636.md b/md/CL/36/CL_0002636.md index 82bf2ac59e..19cd12abf7 100644 --- a/md/CL/36/CL_0002636.md +++ b/md/CL/36/CL_0002636.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_1000436.md b/md/CL/36/CL_1000436.md index 54e0652e59..183cf8baee 100644 --- a/md/CL/36/CL_1000436.md +++ b/md/CL/36/CL_1000436.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_1001036.md b/md/CL/36/CL_1001036.md index f000139815..e1d1b82d7a 100644 --- a/md/CL/36/CL_1001036.md +++ b/md/CL/36/CL_1001036.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/36/CL_1001436.md b/md/CL/36/CL_1001436.md index a92d9f144a..51620de54a 100644 --- a/md/CL/36/CL_1001436.md +++ b/md/CL/36/CL_1001436.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000037.md b/md/CL/37/CL_0000037.md index f611b30538..7614d98f88 100644 --- a/md/CL/37/CL_0000037.md +++ b/md/CL/37/CL_0000037.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000137.md b/md/CL/37/CL_0000137.md index 23fcac3bcb..32faf5bccb 100644 --- a/md/CL/37/CL_0000137.md +++ b/md/CL/37/CL_0000137.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000237.md b/md/CL/37/CL_0000237.md index 93703383b0..abcb0f7be1 100644 --- a/md/CL/37/CL_0000237.md +++ b/md/CL/37/CL_0000237.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000337.md b/md/CL/37/CL_0000337.md index 70502dc0b3..b1c8a7efa1 100644 --- a/md/CL/37/CL_0000337.md +++ b/md/CL/37/CL_0000337.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000437.md b/md/CL/37/CL_0000437.md index 5ba4416eb6..af322b4122 100644 --- a/md/CL/37/CL_0000437.md +++ b/md/CL/37/CL_0000437.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000637.md b/md/CL/37/CL_0000637.md index 958d418010..9fa954155e 100644 --- a/md/CL/37/CL_0000637.md +++ b/md/CL/37/CL_0000637.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000737.md b/md/CL/37/CL_0000737.md index fc8a5cfe25..4f7ce7c9c0 100644 --- a/md/CL/37/CL_0000737.md +++ b/md/CL/37/CL_0000737.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000837.md b/md/CL/37/CL_0000837.md index 0a9bba2036..e1fde95d71 100644 --- a/md/CL/37/CL_0000837.md +++ b/md/CL/37/CL_0000837.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0000937.md b/md/CL/37/CL_0000937.md index 44baeaf9b2..5aca1d192d 100644 --- a/md/CL/37/CL_0000937.md +++ b/md/CL/37/CL_0000937.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002037.md b/md/CL/37/CL_0002037.md index 2a34fcf6da..c707eb9340 100644 --- a/md/CL/37/CL_0002037.md +++ b/md/CL/37/CL_0002037.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002137.md b/md/CL/37/CL_0002137.md index 34e28d6e41..b5445936f9 100644 --- a/md/CL/37/CL_0002137.md +++ b/md/CL/37/CL_0002137.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002237.md b/md/CL/37/CL_0002237.md index bda3c8ad7f..ebc66223b6 100644 --- a/md/CL/37/CL_0002237.md +++ b/md/CL/37/CL_0002237.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002337.md b/md/CL/37/CL_0002337.md index 128a624763..89bfffa7f2 100644 --- a/md/CL/37/CL_0002337.md +++ b/md/CL/37/CL_0002337.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002437.md b/md/CL/37/CL_0002437.md index ce4653b784..b4d6e25871 100644 --- a/md/CL/37/CL_0002437.md +++ b/md/CL/37/CL_0002437.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002537.md b/md/CL/37/CL_0002537.md index 26d92f2dce..fd80956ff8 100644 --- a/md/CL/37/CL_0002537.md +++ b/md/CL/37/CL_0002537.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_0002637.md b/md/CL/37/CL_0002637.md index a45dfde9a1..4f1ef58fcd 100644 --- a/md/CL/37/CL_0002637.md +++ b/md/CL/37/CL_0002637.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_1000337.md b/md/CL/37/CL_1000337.md index 06c4472305..d21c05837c 100644 --- a/md/CL/37/CL_1000337.md +++ b/md/CL/37/CL_1000337.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_1000437.md b/md/CL/37/CL_1000437.md index 4190d54efe..762eb20469 100644 --- a/md/CL/37/CL_1000437.md +++ b/md/CL/37/CL_1000437.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/37/CL_1001437.md b/md/CL/37/CL_1001437.md index f07397ac4a..bb23d79529 100644 --- a/md/CL/37/CL_1001437.md +++ b/md/CL/37/CL_1001437.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000038.md b/md/CL/38/CL_0000038.md index 09f7cc850d..28f021084f 100644 --- a/md/CL/38/CL_0000038.md +++ b/md/CL/38/CL_0000038.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000138.md b/md/CL/38/CL_0000138.md index 84405a347d..2203242347 100644 --- a/md/CL/38/CL_0000138.md +++ b/md/CL/38/CL_0000138.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000238.md b/md/CL/38/CL_0000238.md index 686654e5d9..26bfc934bc 100644 --- a/md/CL/38/CL_0000238.md +++ b/md/CL/38/CL_0000238.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000338.md b/md/CL/38/CL_0000338.md index d0352d09f7..e9d870824d 100644 --- a/md/CL/38/CL_0000338.md +++ b/md/CL/38/CL_0000338.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000438.md b/md/CL/38/CL_0000438.md index 530c8f1289..c280261093 100644 --- a/md/CL/38/CL_0000438.md +++ b/md/CL/38/CL_0000438.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000638.md b/md/CL/38/CL_0000638.md index 75440f913b..f52ca428f9 100644 --- a/md/CL/38/CL_0000638.md +++ b/md/CL/38/CL_0000638.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000738.md b/md/CL/38/CL_0000738.md index 4a28c9b952..9acc561874 100644 --- a/md/CL/38/CL_0000738.md +++ b/md/CL/38/CL_0000738.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000838.md b/md/CL/38/CL_0000838.md index a3f7738971..ad83cdde1f 100644 --- a/md/CL/38/CL_0000838.md +++ b/md/CL/38/CL_0000838.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0000938.md b/md/CL/38/CL_0000938.md index a6184cf3e8..4c86ddd1ca 100644 --- a/md/CL/38/CL_0000938.md +++ b/md/CL/38/CL_0000938.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002038.md b/md/CL/38/CL_0002038.md index 36dcff3850..9dc7ffb510 100644 --- a/md/CL/38/CL_0002038.md +++ b/md/CL/38/CL_0002038.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002138.md b/md/CL/38/CL_0002138.md index ac96a06f71..110908c573 100644 --- a/md/CL/38/CL_0002138.md +++ b/md/CL/38/CL_0002138.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002238.md b/md/CL/38/CL_0002238.md index 3c63b449b1..1ab53dbab7 100644 --- a/md/CL/38/CL_0002238.md +++ b/md/CL/38/CL_0002238.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002338.md b/md/CL/38/CL_0002338.md index 3d4f57ff0e..a8240e2e83 100644 --- a/md/CL/38/CL_0002338.md +++ b/md/CL/38/CL_0002338.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002438.md b/md/CL/38/CL_0002438.md index 8f17335d4d..9b5f098118 100644 --- a/md/CL/38/CL_0002438.md +++ b/md/CL/38/CL_0002438.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002538.md b/md/CL/38/CL_0002538.md index b7f8ad835a..0036351876 100644 --- a/md/CL/38/CL_0002538.md +++ b/md/CL/38/CL_0002538.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_0002638.md b/md/CL/38/CL_0002638.md index 0a75925573..08efa7baa5 100644 --- a/md/CL/38/CL_0002638.md +++ b/md/CL/38/CL_0002638.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_1000338.md b/md/CL/38/CL_1000338.md index ab060303ac..40170ccedf 100644 --- a/md/CL/38/CL_1000338.md +++ b/md/CL/38/CL_1000338.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_1000438.md b/md/CL/38/CL_1000438.md index 3b5b59ad72..f13578dde7 100644 --- a/md/CL/38/CL_1000438.md +++ b/md/CL/38/CL_1000438.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_1000838.md b/md/CL/38/CL_1000838.md index 24a6f40590..6a1eb27947 100644 --- a/md/CL/38/CL_1000838.md +++ b/md/CL/38/CL_1000838.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/38/CL_1001138.md b/md/CL/38/CL_1001138.md index 02c9b5f3d3..2836f26795 100644 --- a/md/CL/38/CL_1001138.md +++ b/md/CL/38/CL_1001138.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000039.md b/md/CL/39/CL_0000039.md index 107e15d1af..4d5c2adf85 100644 --- a/md/CL/39/CL_0000039.md +++ b/md/CL/39/CL_0000039.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000239.md b/md/CL/39/CL_0000239.md index 5ceecd7cae..d063aa6671 100644 --- a/md/CL/39/CL_0000239.md +++ b/md/CL/39/CL_0000239.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000339.md b/md/CL/39/CL_0000339.md index 495a2f8d7d..1e5aa102d8 100644 --- a/md/CL/39/CL_0000339.md +++ b/md/CL/39/CL_0000339.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000439.md b/md/CL/39/CL_0000439.md index 8cb33903e5..71cbe29d61 100644 --- a/md/CL/39/CL_0000439.md +++ b/md/CL/39/CL_0000439.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000639.md b/md/CL/39/CL_0000639.md index 90d45bdd14..4cfcac6e31 100644 --- a/md/CL/39/CL_0000639.md +++ b/md/CL/39/CL_0000639.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000839.md b/md/CL/39/CL_0000839.md index b0b58f8882..856c14e4f3 100644 --- a/md/CL/39/CL_0000839.md +++ b/md/CL/39/CL_0000839.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0000939.md b/md/CL/39/CL_0000939.md index 5673ba5d83..a0aaf73be5 100644 --- a/md/CL/39/CL_0000939.md +++ b/md/CL/39/CL_0000939.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0001039.md b/md/CL/39/CL_0001039.md index e0805653b9..01a2f1d326 100644 --- a/md/CL/39/CL_0001039.md +++ b/md/CL/39/CL_0001039.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002039.md b/md/CL/39/CL_0002039.md index acd82d9ce8..e2d7d5fb66 100644 --- a/md/CL/39/CL_0002039.md +++ b/md/CL/39/CL_0002039.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002139.md b/md/CL/39/CL_0002139.md index e1efebb353..e2b610770d 100644 --- a/md/CL/39/CL_0002139.md +++ b/md/CL/39/CL_0002139.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002239.md b/md/CL/39/CL_0002239.md index 93d0d1be8e..893c23ccbd 100644 --- a/md/CL/39/CL_0002239.md +++ b/md/CL/39/CL_0002239.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002339.md b/md/CL/39/CL_0002339.md index b2b61ee2f3..63cdb2323a 100644 --- a/md/CL/39/CL_0002339.md +++ b/md/CL/39/CL_0002339.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002439.md b/md/CL/39/CL_0002439.md index a62d1aabe4..64871b35a5 100644 --- a/md/CL/39/CL_0002439.md +++ b/md/CL/39/CL_0002439.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002539.md b/md/CL/39/CL_0002539.md index 55a315a104..73ba06e737 100644 --- a/md/CL/39/CL_0002539.md +++ b/md/CL/39/CL_0002539.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_0002639.md b/md/CL/39/CL_0002639.md index 4ae93348af..2688c0a563 100644 --- a/md/CL/39/CL_0002639.md +++ b/md/CL/39/CL_0002639.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_1000339.md b/md/CL/39/CL_1000339.md index cbda962459..84b31956bd 100644 --- a/md/CL/39/CL_1000339.md +++ b/md/CL/39/CL_1000339.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/39/CL_1000839.md b/md/CL/39/CL_1000839.md index b875f9fdb6..fff8152cd8 100644 --- a/md/CL/39/CL_1000839.md +++ b/md/CL/39/CL_1000839.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000040.md b/md/CL/40/CL_0000040.md index 6bdbce1131..78ccfb6ca5 100644 --- a/md/CL/40/CL_0000040.md +++ b/md/CL/40/CL_0000040.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000140.md b/md/CL/40/CL_0000140.md index c3e68cedd6..d7d3242de5 100644 --- a/md/CL/40/CL_0000140.md +++ b/md/CL/40/CL_0000140.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000240.md b/md/CL/40/CL_0000240.md index 6ce846a60b..d4ec2f641d 100644 --- a/md/CL/40/CL_0000240.md +++ b/md/CL/40/CL_0000240.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000340.md b/md/CL/40/CL_0000340.md index 4ba20ba7cd..0dfa73cf95 100644 --- a/md/CL/40/CL_0000340.md +++ b/md/CL/40/CL_0000340.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000440.md b/md/CL/40/CL_0000440.md index 21d0109d0f..7b563d005b 100644 --- a/md/CL/40/CL_0000440.md +++ b/md/CL/40/CL_0000440.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000540.md b/md/CL/40/CL_0000540.md index e2c74bde4b..3dd6c31e82 100644 --- a/md/CL/40/CL_0000540.md +++ b/md/CL/40/CL_0000540.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000740.md b/md/CL/40/CL_0000740.md index 170b4e5efa..33e656dcad 100644 --- a/md/CL/40/CL_0000740.md +++ b/md/CL/40/CL_0000740.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000840.md b/md/CL/40/CL_0000840.md index 9ef8b0edde..7365a9a2ed 100644 --- a/md/CL/40/CL_0000840.md +++ b/md/CL/40/CL_0000840.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0000940.md b/md/CL/40/CL_0000940.md index e1649dab1a..3313c6b342 100644 --- a/md/CL/40/CL_0000940.md +++ b/md/CL/40/CL_0000940.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0001040.md b/md/CL/40/CL_0001040.md index 1fba7b0a0c..5e96fbf619 100644 --- a/md/CL/40/CL_0001040.md +++ b/md/CL/40/CL_0001040.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002040.md b/md/CL/40/CL_0002040.md index bceda46a2b..59f9d0934e 100644 --- a/md/CL/40/CL_0002040.md +++ b/md/CL/40/CL_0002040.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002140.md b/md/CL/40/CL_0002140.md index ccb1bba85a..8c75662d02 100644 --- a/md/CL/40/CL_0002140.md +++ b/md/CL/40/CL_0002140.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002240.md b/md/CL/40/CL_0002240.md index 4c08ff8403..6d094597ce 100644 --- a/md/CL/40/CL_0002240.md +++ b/md/CL/40/CL_0002240.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002340.md b/md/CL/40/CL_0002340.md index 0f14999cab..491c6ce1eb 100644 --- a/md/CL/40/CL_0002340.md +++ b/md/CL/40/CL_0002340.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002440.md b/md/CL/40/CL_0002440.md index b3dbe99a96..901807417c 100644 --- a/md/CL/40/CL_0002440.md +++ b/md/CL/40/CL_0002440.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002540.md b/md/CL/40/CL_0002540.md index b1db794b54..5111db3d4c 100644 --- a/md/CL/40/CL_0002540.md +++ b/md/CL/40/CL_0002540.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_0002640.md b/md/CL/40/CL_0002640.md index d09ab325c1..772e0ba83a 100644 --- a/md/CL/40/CL_0002640.md +++ b/md/CL/40/CL_0002640.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/40/CL_1000340.md b/md/CL/40/CL_1000340.md index a6e88bc856..c6c75912d2 100644 --- a/md/CL/40/CL_1000340.md +++ b/md/CL/40/CL_1000340.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000041.md b/md/CL/41/CL_0000041.md index 7c6c0a84ed..1b957cffcb 100644 --- a/md/CL/41/CL_0000041.md +++ b/md/CL/41/CL_0000041.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000141.md b/md/CL/41/CL_0000141.md index c09c51c3d9..fb0de5c72e 100644 --- a/md/CL/41/CL_0000141.md +++ b/md/CL/41/CL_0000141.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000241.md b/md/CL/41/CL_0000241.md index 34362810b8..f3beaa5190 100644 --- a/md/CL/41/CL_0000241.md +++ b/md/CL/41/CL_0000241.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000341.md b/md/CL/41/CL_0000341.md index 586d80dceb..18c6282dbb 100644 --- a/md/CL/41/CL_0000341.md +++ b/md/CL/41/CL_0000341.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000441.md b/md/CL/41/CL_0000441.md index f0f4069206..7aa040c334 100644 --- a/md/CL/41/CL_0000441.md +++ b/md/CL/41/CL_0000441.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000541.md b/md/CL/41/CL_0000541.md index 1e6b0269b0..ff93ac29ea 100644 --- a/md/CL/41/CL_0000541.md +++ b/md/CL/41/CL_0000541.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000641.md b/md/CL/41/CL_0000641.md index a400eae232..3bbfb9a972 100644 --- a/md/CL/41/CL_0000641.md +++ b/md/CL/41/CL_0000641.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000741.md b/md/CL/41/CL_0000741.md index d84de9e4b1..8fa92047cf 100644 --- a/md/CL/41/CL_0000741.md +++ b/md/CL/41/CL_0000741.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000841.md b/md/CL/41/CL_0000841.md index ec99f21de4..125b7d9925 100644 --- a/md/CL/41/CL_0000841.md +++ b/md/CL/41/CL_0000841.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0000941.md b/md/CL/41/CL_0000941.md index 641c6b07e3..a5f1d2dce3 100644 --- a/md/CL/41/CL_0000941.md +++ b/md/CL/41/CL_0000941.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0001041.md b/md/CL/41/CL_0001041.md index 0880cfc074..a2f04087a2 100644 --- a/md/CL/41/CL_0001041.md +++ b/md/CL/41/CL_0001041.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002041.md b/md/CL/41/CL_0002041.md index ade412767e..c6b7a4760d 100644 --- a/md/CL/41/CL_0002041.md +++ b/md/CL/41/CL_0002041.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002141.md b/md/CL/41/CL_0002141.md index e4f5d9fd5f..ac96b74fe1 100644 --- a/md/CL/41/CL_0002141.md +++ b/md/CL/41/CL_0002141.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002241.md b/md/CL/41/CL_0002241.md index b40b774d6b..c72f7e0544 100644 --- a/md/CL/41/CL_0002241.md +++ b/md/CL/41/CL_0002241.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002341.md b/md/CL/41/CL_0002341.md index 62d99f6fc1..b54a94d001 100644 --- a/md/CL/41/CL_0002341.md +++ b/md/CL/41/CL_0002341.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002441.md b/md/CL/41/CL_0002441.md index 0b1f19edcc..845c4d0e04 100644 --- a/md/CL/41/CL_0002441.md +++ b/md/CL/41/CL_0002441.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002541.md b/md/CL/41/CL_0002541.md index d98a3ebddb..4426e878f4 100644 --- a/md/CL/41/CL_0002541.md +++ b/md/CL/41/CL_0002541.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_0002641.md b/md/CL/41/CL_0002641.md index 05889d2d9d..f688aef969 100644 --- a/md/CL/41/CL_0002641.md +++ b/md/CL/41/CL_0002641.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_1000341.md b/md/CL/41/CL_1000341.md index 9464780f3a..0967d2fd4b 100644 --- a/md/CL/41/CL_1000341.md +++ b/md/CL/41/CL_1000341.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/41/CL_1000441.md b/md/CL/41/CL_1000441.md index ecf5df1b05..ace4178d53 100644 --- a/md/CL/41/CL_1000441.md +++ b/md/CL/41/CL_1000441.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000042.md b/md/CL/42/CL_0000042.md index 4a7cc66ea8..4f5541988c 100644 --- a/md/CL/42/CL_0000042.md +++ b/md/CL/42/CL_0000042.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000142.md b/md/CL/42/CL_0000142.md index facd150a6d..a715740e7e 100644 --- a/md/CL/42/CL_0000142.md +++ b/md/CL/42/CL_0000142.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000242.md b/md/CL/42/CL_0000242.md index 83ed9d35ea..09b08a1c3f 100644 --- a/md/CL/42/CL_0000242.md +++ b/md/CL/42/CL_0000242.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000342.md b/md/CL/42/CL_0000342.md index dfa07b6bc0..c137bf9f72 100644 --- a/md/CL/42/CL_0000342.md +++ b/md/CL/42/CL_0000342.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000442.md b/md/CL/42/CL_0000442.md index 792002a2bd..394fdf225b 100644 --- a/md/CL/42/CL_0000442.md +++ b/md/CL/42/CL_0000442.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000542.md b/md/CL/42/CL_0000542.md index db81cffada..d83720797a 100644 --- a/md/CL/42/CL_0000542.md +++ b/md/CL/42/CL_0000542.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000642.md b/md/CL/42/CL_0000642.md index ab56802970..8013a13067 100644 --- a/md/CL/42/CL_0000642.md +++ b/md/CL/42/CL_0000642.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000742.md b/md/CL/42/CL_0000742.md index 4e63b6dc56..c45bad7708 100644 --- a/md/CL/42/CL_0000742.md +++ b/md/CL/42/CL_0000742.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000842.md b/md/CL/42/CL_0000842.md index 7c5a8e531a..2a3187f0d2 100644 --- a/md/CL/42/CL_0000842.md +++ b/md/CL/42/CL_0000842.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0000942.md b/md/CL/42/CL_0000942.md index ee7377fc18..6a384a5f07 100644 --- a/md/CL/42/CL_0000942.md +++ b/md/CL/42/CL_0000942.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0001042.md b/md/CL/42/CL_0001042.md index c92806b936..f10927ea42 100644 --- a/md/CL/42/CL_0001042.md +++ b/md/CL/42/CL_0001042.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002042.md b/md/CL/42/CL_0002042.md index 5ef26b604d..6ac38d13f5 100644 --- a/md/CL/42/CL_0002042.md +++ b/md/CL/42/CL_0002042.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002142.md b/md/CL/42/CL_0002142.md index b46156d985..fc85351441 100644 --- a/md/CL/42/CL_0002142.md +++ b/md/CL/42/CL_0002142.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002242.md b/md/CL/42/CL_0002242.md index 850c42b1d1..d4dd273c82 100644 --- a/md/CL/42/CL_0002242.md +++ b/md/CL/42/CL_0002242.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002342.md b/md/CL/42/CL_0002342.md index b887d46735..299e41ecdc 100644 --- a/md/CL/42/CL_0002342.md +++ b/md/CL/42/CL_0002342.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002442.md b/md/CL/42/CL_0002442.md index 0a76514762..449f027ff4 100644 --- a/md/CL/42/CL_0002442.md +++ b/md/CL/42/CL_0002442.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_0002642.md b/md/CL/42/CL_0002642.md index 5e6f5a1d6c..f6a126a4fc 100644 --- a/md/CL/42/CL_0002642.md +++ b/md/CL/42/CL_0002642.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_1000342.md b/md/CL/42/CL_1000342.md index f9c6b210c8..f6660a26bd 100644 --- a/md/CL/42/CL_1000342.md +++ b/md/CL/42/CL_1000342.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_1000442.md b/md/CL/42/CL_1000442.md index 048ed9bbba..0a03059d15 100644 --- a/md/CL/42/CL_1000442.md +++ b/md/CL/42/CL_1000442.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_1000742.md b/md/CL/42/CL_1000742.md index 52c9294b19..22e06a8872 100644 --- a/md/CL/42/CL_1000742.md +++ b/md/CL/42/CL_1000742.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/42/CL_1001142.md b/md/CL/42/CL_1001142.md index ce2715a298..0f76a5dbd5 100644 --- a/md/CL/42/CL_1001142.md +++ b/md/CL/42/CL_1001142.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000043.md b/md/CL/43/CL_0000043.md index 3fee5bda28..98350322aa 100644 --- a/md/CL/43/CL_0000043.md +++ b/md/CL/43/CL_0000043.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000143.md b/md/CL/43/CL_0000143.md index 513567695a..0878d586a1 100644 --- a/md/CL/43/CL_0000143.md +++ b/md/CL/43/CL_0000143.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000243.md b/md/CL/43/CL_0000243.md index e1755075e1..411e1cdde5 100644 --- a/md/CL/43/CL_0000243.md +++ b/md/CL/43/CL_0000243.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000343.md b/md/CL/43/CL_0000343.md index 88d453ee29..031d8ab417 100644 --- a/md/CL/43/CL_0000343.md +++ b/md/CL/43/CL_0000343.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000443.md b/md/CL/43/CL_0000443.md index c5eb10d1de..e219596841 100644 --- a/md/CL/43/CL_0000443.md +++ b/md/CL/43/CL_0000443.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000743.md b/md/CL/43/CL_0000743.md index 63fbb75469..62e7ec476b 100644 --- a/md/CL/43/CL_0000743.md +++ b/md/CL/43/CL_0000743.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000843.md b/md/CL/43/CL_0000843.md index 4042723205..d5bad687a8 100644 --- a/md/CL/43/CL_0000843.md +++ b/md/CL/43/CL_0000843.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0000943.md b/md/CL/43/CL_0000943.md index 8e5432173b..da48c0483e 100644 --- a/md/CL/43/CL_0000943.md +++ b/md/CL/43/CL_0000943.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002043.md b/md/CL/43/CL_0002043.md index 70c010dd73..bdac19ec7b 100644 --- a/md/CL/43/CL_0002043.md +++ b/md/CL/43/CL_0002043.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002143.md b/md/CL/43/CL_0002143.md index cffd971fdd..af4cc1e5ef 100644 --- a/md/CL/43/CL_0002143.md +++ b/md/CL/43/CL_0002143.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002243.md b/md/CL/43/CL_0002243.md index e18445cf32..768e555303 100644 --- a/md/CL/43/CL_0002243.md +++ b/md/CL/43/CL_0002243.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002343.md b/md/CL/43/CL_0002343.md index d5532413dc..e1ced1d739 100644 --- a/md/CL/43/CL_0002343.md +++ b/md/CL/43/CL_0002343.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002443.md b/md/CL/43/CL_0002443.md index fcd99a9faa..013c8c92c4 100644 --- a/md/CL/43/CL_0002443.md +++ b/md/CL/43/CL_0002443.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002543.md b/md/CL/43/CL_0002543.md index b73ea933dc..d657d69979 100644 --- a/md/CL/43/CL_0002543.md +++ b/md/CL/43/CL_0002543.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_0002643.md b/md/CL/43/CL_0002643.md index 8bdfe469a5..581324afb9 100644 --- a/md/CL/43/CL_0002643.md +++ b/md/CL/43/CL_0002643.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_1000343.md b/md/CL/43/CL_1000343.md index 9a0bdfc03f..345f03dd52 100644 --- a/md/CL/43/CL_1000343.md +++ b/md/CL/43/CL_1000343.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/43/CL_1000443.md b/md/CL/43/CL_1000443.md index 4e7b602ff1..8481b6fddf 100644 --- a/md/CL/43/CL_1000443.md +++ b/md/CL/43/CL_1000443.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000244.md b/md/CL/44/CL_0000244.md index ac242ad114..ab80df1e58 100644 --- a/md/CL/44/CL_0000244.md +++ b/md/CL/44/CL_0000244.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000444.md b/md/CL/44/CL_0000444.md index 72959ae80a..211639803c 100644 --- a/md/CL/44/CL_0000444.md +++ b/md/CL/44/CL_0000444.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000544.md b/md/CL/44/CL_0000544.md index 8580745c73..a6d650cb06 100644 --- a/md/CL/44/CL_0000544.md +++ b/md/CL/44/CL_0000544.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000644.md b/md/CL/44/CL_0000644.md index 407bee9b62..b7563534be 100644 --- a/md/CL/44/CL_0000644.md +++ b/md/CL/44/CL_0000644.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000744.md b/md/CL/44/CL_0000744.md index 7856b45fb5..1ed4752a43 100644 --- a/md/CL/44/CL_0000744.md +++ b/md/CL/44/CL_0000744.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000844.md b/md/CL/44/CL_0000844.md index 4be233f3f7..2bd128abf7 100644 --- a/md/CL/44/CL_0000844.md +++ b/md/CL/44/CL_0000844.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0000944.md b/md/CL/44/CL_0000944.md index 26b9dac183..9337f84770 100644 --- a/md/CL/44/CL_0000944.md +++ b/md/CL/44/CL_0000944.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002044.md b/md/CL/44/CL_0002044.md index fb86339e93..b631b6dfce 100644 --- a/md/CL/44/CL_0002044.md +++ b/md/CL/44/CL_0002044.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002144.md b/md/CL/44/CL_0002144.md index ef75c6eaab..cb2df038ea 100644 --- a/md/CL/44/CL_0002144.md +++ b/md/CL/44/CL_0002144.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002244.md b/md/CL/44/CL_0002244.md index ed54a8bf3c..61fb3cd09e 100644 --- a/md/CL/44/CL_0002244.md +++ b/md/CL/44/CL_0002244.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002344.md b/md/CL/44/CL_0002344.md index e0045ca10f..ce6e255d06 100644 --- a/md/CL/44/CL_0002344.md +++ b/md/CL/44/CL_0002344.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002444.md b/md/CL/44/CL_0002444.md index fa8ce1b146..626d5e6cc4 100644 --- a/md/CL/44/CL_0002444.md +++ b/md/CL/44/CL_0002444.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002544.md b/md/CL/44/CL_0002544.md index 3eae7d6855..94b18daa5b 100644 --- a/md/CL/44/CL_0002544.md +++ b/md/CL/44/CL_0002544.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_0002644.md b/md/CL/44/CL_0002644.md index 912af555e0..348f4b542b 100644 --- a/md/CL/44/CL_0002644.md +++ b/md/CL/44/CL_0002644.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_1000344.md b/md/CL/44/CL_1000344.md index 458c3d19fe..1c98a34a43 100644 --- a/md/CL/44/CL_1000344.md +++ b/md/CL/44/CL_1000344.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/44/CL_1000444.md b/md/CL/44/CL_1000444.md index de6aff2222..1ceee0d201 100644 --- a/md/CL/44/CL_1000444.md +++ b/md/CL/44/CL_1000444.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000145.md b/md/CL/45/CL_0000145.md index 32e1c34574..027d0115ea 100644 --- a/md/CL/45/CL_0000145.md +++ b/md/CL/45/CL_0000145.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000345.md b/md/CL/45/CL_0000345.md index 828cd64499..dd24acc240 100644 --- a/md/CL/45/CL_0000345.md +++ b/md/CL/45/CL_0000345.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000445.md b/md/CL/45/CL_0000445.md index f81225201c..b48cc79a7d 100644 --- a/md/CL/45/CL_0000445.md +++ b/md/CL/45/CL_0000445.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000545.md b/md/CL/45/CL_0000545.md index d6e3683010..4d82481e63 100644 --- a/md/CL/45/CL_0000545.md +++ b/md/CL/45/CL_0000545.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000645.md b/md/CL/45/CL_0000645.md index 2719531e35..37560503d2 100644 --- a/md/CL/45/CL_0000645.md +++ b/md/CL/45/CL_0000645.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000745.md b/md/CL/45/CL_0000745.md index 92a5cbb10c..b9c2aba6a5 100644 --- a/md/CL/45/CL_0000745.md +++ b/md/CL/45/CL_0000745.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000845.md b/md/CL/45/CL_0000845.md index 7715883469..eacfeed418 100644 --- a/md/CL/45/CL_0000845.md +++ b/md/CL/45/CL_0000845.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0000945.md b/md/CL/45/CL_0000945.md index 397c6b5853..9bacbaafe8 100644 --- a/md/CL/45/CL_0000945.md +++ b/md/CL/45/CL_0000945.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002045.md b/md/CL/45/CL_0002045.md index 468b626185..5bd87dc33c 100644 --- a/md/CL/45/CL_0002045.md +++ b/md/CL/45/CL_0002045.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002145.md b/md/CL/45/CL_0002145.md index 2660195786..0f5392aa72 100644 --- a/md/CL/45/CL_0002145.md +++ b/md/CL/45/CL_0002145.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002345.md b/md/CL/45/CL_0002345.md index 18ec89c5b2..db851f172c 100644 --- a/md/CL/45/CL_0002345.md +++ b/md/CL/45/CL_0002345.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002445.md b/md/CL/45/CL_0002445.md index b2c8217214..3ce1844e59 100644 --- a/md/CL/45/CL_0002445.md +++ b/md/CL/45/CL_0002445.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002545.md b/md/CL/45/CL_0002545.md index 03fc8ee04d..ae24cbad1a 100644 --- a/md/CL/45/CL_0002545.md +++ b/md/CL/45/CL_0002545.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_0002645.md b/md/CL/45/CL_0002645.md index 3e1db96ea2..29e6691937 100644 --- a/md/CL/45/CL_0002645.md +++ b/md/CL/45/CL_0002645.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_1000345.md b/md/CL/45/CL_1000345.md index 7518c2fdc4..e0eb17a242 100644 --- a/md/CL/45/CL_1000345.md +++ b/md/CL/45/CL_1000345.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_1000445.md b/md/CL/45/CL_1000445.md index a1828bbbc0..8fe170e244 100644 --- a/md/CL/45/CL_1000445.md +++ b/md/CL/45/CL_1000445.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_1001045.md b/md/CL/45/CL_1001045.md index 44452867f6..bd0d5e262b 100644 --- a/md/CL/45/CL_1001045.md +++ b/md/CL/45/CL_1001045.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/45/CL_1001145.md b/md/CL/45/CL_1001145.md index ca4da2b63d..b7f71ac8f2 100644 --- a/md/CL/45/CL_1001145.md +++ b/md/CL/45/CL_1001145.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000146.md b/md/CL/46/CL_0000146.md index 6ddbf6c564..48b73d83f1 100644 --- a/md/CL/46/CL_0000146.md +++ b/md/CL/46/CL_0000146.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000246.md b/md/CL/46/CL_0000246.md index 9b8ece01f9..22615955e7 100644 --- a/md/CL/46/CL_0000246.md +++ b/md/CL/46/CL_0000246.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000346.md b/md/CL/46/CL_0000346.md index 75cb7f96d9..03457bd00c 100644 --- a/md/CL/46/CL_0000346.md +++ b/md/CL/46/CL_0000346.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000446.md b/md/CL/46/CL_0000446.md index 0bdc3fa9a1..14ab3ad46e 100644 --- a/md/CL/46/CL_0000446.md +++ b/md/CL/46/CL_0000446.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000546.md b/md/CL/46/CL_0000546.md index 4f1bcaa1fb..d48f6c2781 100644 --- a/md/CL/46/CL_0000546.md +++ b/md/CL/46/CL_0000546.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000646.md b/md/CL/46/CL_0000646.md index e55a1c6182..d21dbd569b 100644 --- a/md/CL/46/CL_0000646.md +++ b/md/CL/46/CL_0000646.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000746.md b/md/CL/46/CL_0000746.md index 2482f0a6b8..b5377cd947 100644 --- a/md/CL/46/CL_0000746.md +++ b/md/CL/46/CL_0000746.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000846.md b/md/CL/46/CL_0000846.md index 77b903f1c0..cff0643b04 100644 --- a/md/CL/46/CL_0000846.md +++ b/md/CL/46/CL_0000846.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0000946.md b/md/CL/46/CL_0000946.md index 7567b70391..ccf30613db 100644 --- a/md/CL/46/CL_0000946.md +++ b/md/CL/46/CL_0000946.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002046.md b/md/CL/46/CL_0002046.md index 4904af6a21..4fe9cc35f1 100644 --- a/md/CL/46/CL_0002046.md +++ b/md/CL/46/CL_0002046.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002146.md b/md/CL/46/CL_0002146.md index 8c5394724e..4bdfd37b40 100644 --- a/md/CL/46/CL_0002146.md +++ b/md/CL/46/CL_0002146.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002246.md b/md/CL/46/CL_0002246.md index ed8d692cb9..54ef900eb2 100644 --- a/md/CL/46/CL_0002246.md +++ b/md/CL/46/CL_0002246.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002346.md b/md/CL/46/CL_0002346.md index 2f69e1d0cd..812a266f93 100644 --- a/md/CL/46/CL_0002346.md +++ b/md/CL/46/CL_0002346.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002446.md b/md/CL/46/CL_0002446.md index eca45112f5..51df60576b 100644 --- a/md/CL/46/CL_0002446.md +++ b/md/CL/46/CL_0002446.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002546.md b/md/CL/46/CL_0002546.md index 1743f6c9c5..7eb8a11e0f 100644 --- a/md/CL/46/CL_0002546.md +++ b/md/CL/46/CL_0002546.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_0002646.md b/md/CL/46/CL_0002646.md index 2471930d70..4197e0a1f0 100644 --- a/md/CL/46/CL_0002646.md +++ b/md/CL/46/CL_0002646.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_1000346.md b/md/CL/46/CL_1000346.md index 49c18cff81..5ff55ad0d4 100644 --- a/md/CL/46/CL_1000346.md +++ b/md/CL/46/CL_1000346.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_1000546.md b/md/CL/46/CL_1000546.md index 56194ce4b1..f08c89058f 100644 --- a/md/CL/46/CL_1000546.md +++ b/md/CL/46/CL_1000546.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/46/CL_1000746.md b/md/CL/46/CL_1000746.md index cd0fad21f1..b87c23bda2 100644 --- a/md/CL/46/CL_1000746.md +++ b/md/CL/46/CL_1000746.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000047.md b/md/CL/47/CL_0000047.md index 5d2cc9a049..932b46c235 100644 --- a/md/CL/47/CL_0000047.md +++ b/md/CL/47/CL_0000047.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000147.md b/md/CL/47/CL_0000147.md index d1a0aadff5..fa68465e73 100644 --- a/md/CL/47/CL_0000147.md +++ b/md/CL/47/CL_0000147.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000247.md b/md/CL/47/CL_0000247.md index c45dfcda39..fa6528cd9f 100644 --- a/md/CL/47/CL_0000247.md +++ b/md/CL/47/CL_0000247.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000347.md b/md/CL/47/CL_0000347.md index c6e8ee7c22..ba00e22930 100644 --- a/md/CL/47/CL_0000347.md +++ b/md/CL/47/CL_0000347.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000447.md b/md/CL/47/CL_0000447.md index f585a7badb..cac5ebaa89 100644 --- a/md/CL/47/CL_0000447.md +++ b/md/CL/47/CL_0000447.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000547.md b/md/CL/47/CL_0000547.md index 15c9077dd3..a3f15861ec 100644 --- a/md/CL/47/CL_0000547.md +++ b/md/CL/47/CL_0000547.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000647.md b/md/CL/47/CL_0000647.md index 01cb2f802b..70abeac1c1 100644 --- a/md/CL/47/CL_0000647.md +++ b/md/CL/47/CL_0000647.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000747.md b/md/CL/47/CL_0000747.md index 6bdbc1dd76..4fded6b981 100644 --- a/md/CL/47/CL_0000747.md +++ b/md/CL/47/CL_0000747.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000847.md b/md/CL/47/CL_0000847.md index 5dd011f39f..d7045dbcad 100644 --- a/md/CL/47/CL_0000847.md +++ b/md/CL/47/CL_0000847.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0000947.md b/md/CL/47/CL_0000947.md index e1af582e90..8707deee49 100644 --- a/md/CL/47/CL_0000947.md +++ b/md/CL/47/CL_0000947.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002047.md b/md/CL/47/CL_0002047.md index 9b5d09d336..9405c0676b 100644 --- a/md/CL/47/CL_0002047.md +++ b/md/CL/47/CL_0002047.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002147.md b/md/CL/47/CL_0002147.md index 47a8a1ed41..561c16d773 100644 --- a/md/CL/47/CL_0002147.md +++ b/md/CL/47/CL_0002147.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002247.md b/md/CL/47/CL_0002247.md index 8ad09da54c..d69667bf79 100644 --- a/md/CL/47/CL_0002247.md +++ b/md/CL/47/CL_0002247.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002347.md b/md/CL/47/CL_0002347.md index 5499cf9447..167f872ebf 100644 --- a/md/CL/47/CL_0002347.md +++ b/md/CL/47/CL_0002347.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002447.md b/md/CL/47/CL_0002447.md index 8a89cf35c3..3501fb1fa2 100644 --- a/md/CL/47/CL_0002447.md +++ b/md/CL/47/CL_0002447.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002547.md b/md/CL/47/CL_0002547.md index 8d62473f5c..c3a476ea75 100644 --- a/md/CL/47/CL_0002547.md +++ b/md/CL/47/CL_0002547.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_0002647.md b/md/CL/47/CL_0002647.md index 5833d7593f..e1dd024efe 100644 --- a/md/CL/47/CL_0002647.md +++ b/md/CL/47/CL_0002647.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_1000347.md b/md/CL/47/CL_1000347.md index 0a2c15d19d..53ab70224f 100644 --- a/md/CL/47/CL_1000347.md +++ b/md/CL/47/CL_1000347.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_1000447.md b/md/CL/47/CL_1000447.md index b47c03e92d..4ae952be79 100644 --- a/md/CL/47/CL_1000447.md +++ b/md/CL/47/CL_1000447.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/47/CL_1000547.md b/md/CL/47/CL_1000547.md index bff3c83955..a25e9368e0 100644 --- a/md/CL/47/CL_1000547.md +++ b/md/CL/47/CL_1000547.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000048.md b/md/CL/48/CL_0000048.md index e3db64e5dc..2e24afad6d 100644 --- a/md/CL/48/CL_0000048.md +++ b/md/CL/48/CL_0000048.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000148.md b/md/CL/48/CL_0000148.md index ad570df939..54157b9ea5 100644 --- a/md/CL/48/CL_0000148.md +++ b/md/CL/48/CL_0000148.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000348.md b/md/CL/48/CL_0000348.md index 0859f090a2..fe19129f0f 100644 --- a/md/CL/48/CL_0000348.md +++ b/md/CL/48/CL_0000348.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000448.md b/md/CL/48/CL_0000448.md index 636ef9a40f..62b9a55a14 100644 --- a/md/CL/48/CL_0000448.md +++ b/md/CL/48/CL_0000448.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000548.md b/md/CL/48/CL_0000548.md index d6c9c8308b..44009c8956 100644 --- a/md/CL/48/CL_0000548.md +++ b/md/CL/48/CL_0000548.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000648.md b/md/CL/48/CL_0000648.md index 60264e15ea..7336e3033a 100644 --- a/md/CL/48/CL_0000648.md +++ b/md/CL/48/CL_0000648.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000748.md b/md/CL/48/CL_0000748.md index e9df9faa8f..3db5b04fc2 100644 --- a/md/CL/48/CL_0000748.md +++ b/md/CL/48/CL_0000748.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000848.md b/md/CL/48/CL_0000848.md index 3880816552..acfe26d296 100644 --- a/md/CL/48/CL_0000848.md +++ b/md/CL/48/CL_0000848.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0000948.md b/md/CL/48/CL_0000948.md index 7ff694b6aa..5afb758306 100644 --- a/md/CL/48/CL_0000948.md +++ b/md/CL/48/CL_0000948.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002048.md b/md/CL/48/CL_0002048.md index d03f98c6a1..2e1b8f1e22 100644 --- a/md/CL/48/CL_0002048.md +++ b/md/CL/48/CL_0002048.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002148.md b/md/CL/48/CL_0002148.md index 9bc2d7fd9d..f06a74e537 100644 --- a/md/CL/48/CL_0002148.md +++ b/md/CL/48/CL_0002148.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002248.md b/md/CL/48/CL_0002248.md index 165270747d..8de9aab276 100644 --- a/md/CL/48/CL_0002248.md +++ b/md/CL/48/CL_0002248.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002348.md b/md/CL/48/CL_0002348.md index 89c3348b1d..03529b6f4f 100644 --- a/md/CL/48/CL_0002348.md +++ b/md/CL/48/CL_0002348.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002448.md b/md/CL/48/CL_0002448.md index 6fed92c846..b58fd4b4fb 100644 --- a/md/CL/48/CL_0002448.md +++ b/md/CL/48/CL_0002448.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002548.md b/md/CL/48/CL_0002548.md index abfe4b69b2..71ba43a8e5 100644 --- a/md/CL/48/CL_0002548.md +++ b/md/CL/48/CL_0002548.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_0002648.md b/md/CL/48/CL_0002648.md index 293cdca3a5..aded10a302 100644 --- a/md/CL/48/CL_0002648.md +++ b/md/CL/48/CL_0002648.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_1000348.md b/md/CL/48/CL_1000348.md index 25bd53e362..03ac1d7925 100644 --- a/md/CL/48/CL_1000348.md +++ b/md/CL/48/CL_1000348.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_1000448.md b/md/CL/48/CL_1000448.md index 0f05923896..a398371235 100644 --- a/md/CL/48/CL_1000448.md +++ b/md/CL/48/CL_1000448.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/48/CL_1000548.md b/md/CL/48/CL_1000548.md index d1d519a7aa..e950ec1620 100644 --- a/md/CL/48/CL_1000548.md +++ b/md/CL/48/CL_1000548.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000049.md b/md/CL/49/CL_0000049.md index 28e0bf1192..f6a466571b 100644 --- a/md/CL/49/CL_0000049.md +++ b/md/CL/49/CL_0000049.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000149.md b/md/CL/49/CL_0000149.md index 993c0557c2..89f4712bec 100644 --- a/md/CL/49/CL_0000149.md +++ b/md/CL/49/CL_0000149.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000249.md b/md/CL/49/CL_0000249.md index ebfab2cc36..0c2f5f9ef1 100644 --- a/md/CL/49/CL_0000249.md +++ b/md/CL/49/CL_0000249.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000349.md b/md/CL/49/CL_0000349.md index 8450581b45..a0b6b0803c 100644 --- a/md/CL/49/CL_0000349.md +++ b/md/CL/49/CL_0000349.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000449.md b/md/CL/49/CL_0000449.md index 4f63c9dc70..9f4df69364 100644 --- a/md/CL/49/CL_0000449.md +++ b/md/CL/49/CL_0000449.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000549.md b/md/CL/49/CL_0000549.md index 3351491346..93121f5515 100644 --- a/md/CL/49/CL_0000549.md +++ b/md/CL/49/CL_0000549.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000649.md b/md/CL/49/CL_0000649.md index 6c275695ac..9259426ca1 100644 --- a/md/CL/49/CL_0000649.md +++ b/md/CL/49/CL_0000649.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000749.md b/md/CL/49/CL_0000749.md index e8d7684115..bbc372df46 100644 --- a/md/CL/49/CL_0000749.md +++ b/md/CL/49/CL_0000749.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000849.md b/md/CL/49/CL_0000849.md index c2970673de..38d2b97552 100644 --- a/md/CL/49/CL_0000849.md +++ b/md/CL/49/CL_0000849.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0000949.md b/md/CL/49/CL_0000949.md index 62f0dbb37c..245adf48a4 100644 --- a/md/CL/49/CL_0000949.md +++ b/md/CL/49/CL_0000949.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002049.md b/md/CL/49/CL_0002049.md index ded7243430..8d5043d6f1 100644 --- a/md/CL/49/CL_0002049.md +++ b/md/CL/49/CL_0002049.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002149.md b/md/CL/49/CL_0002149.md index 3e9c6d7773..a3436d5199 100644 --- a/md/CL/49/CL_0002149.md +++ b/md/CL/49/CL_0002149.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002249.md b/md/CL/49/CL_0002249.md index 6f4098cce7..7ce09b85db 100644 --- a/md/CL/49/CL_0002249.md +++ b/md/CL/49/CL_0002249.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002349.md b/md/CL/49/CL_0002349.md index 23fcd154a9..4c60656fb6 100644 --- a/md/CL/49/CL_0002349.md +++ b/md/CL/49/CL_0002349.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002449.md b/md/CL/49/CL_0002449.md index 5af35a6aef..69bc060d9b 100644 --- a/md/CL/49/CL_0002449.md +++ b/md/CL/49/CL_0002449.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002549.md b/md/CL/49/CL_0002549.md index 3025b06bf3..fb4258b6fd 100644 --- a/md/CL/49/CL_0002549.md +++ b/md/CL/49/CL_0002549.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_0002649.md b/md/CL/49/CL_0002649.md index 814c003253..5b2545d030 100644 --- a/md/CL/49/CL_0002649.md +++ b/md/CL/49/CL_0002649.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_1000349.md b/md/CL/49/CL_1000349.md index c7445fbae1..3ff7b75e53 100644 --- a/md/CL/49/CL_1000349.md +++ b/md/CL/49/CL_1000349.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_1000449.md b/md/CL/49/CL_1000449.md index f877c9e0fa..2a550c345e 100644 --- a/md/CL/49/CL_1000449.md +++ b/md/CL/49/CL_1000449.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_1000549.md b/md/CL/49/CL_1000549.md index d3de93dadc..1d78b10493 100644 --- a/md/CL/49/CL_1000549.md +++ b/md/CL/49/CL_1000549.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/49/CL_1000849.md b/md/CL/49/CL_1000849.md index b6178cf986..3ccd23870b 100644 --- a/md/CL/49/CL_1000849.md +++ b/md/CL/49/CL_1000849.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000050.md b/md/CL/50/CL_0000050.md index 3bdad17a4a..01324d1ffe 100644 --- a/md/CL/50/CL_0000050.md +++ b/md/CL/50/CL_0000050.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000150.md b/md/CL/50/CL_0000150.md index a2eca9df03..21006557af 100644 --- a/md/CL/50/CL_0000150.md +++ b/md/CL/50/CL_0000150.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000350.md b/md/CL/50/CL_0000350.md index 24fa5e186c..9bcb85110e 100644 --- a/md/CL/50/CL_0000350.md +++ b/md/CL/50/CL_0000350.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000550.md b/md/CL/50/CL_0000550.md index 7f23664cfc..0468998978 100644 --- a/md/CL/50/CL_0000550.md +++ b/md/CL/50/CL_0000550.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000650.md b/md/CL/50/CL_0000650.md index c6072a4445..7f2c1b1bc7 100644 --- a/md/CL/50/CL_0000650.md +++ b/md/CL/50/CL_0000650.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000750.md b/md/CL/50/CL_0000750.md index e8523d92c9..9374e29803 100644 --- a/md/CL/50/CL_0000750.md +++ b/md/CL/50/CL_0000750.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000850.md b/md/CL/50/CL_0000850.md index f4cf143e2b..a1ccc68fa9 100644 --- a/md/CL/50/CL_0000850.md +++ b/md/CL/50/CL_0000850.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0000950.md b/md/CL/50/CL_0000950.md index 19daefbd3e..38106656a6 100644 --- a/md/CL/50/CL_0000950.md +++ b/md/CL/50/CL_0000950.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002050.md b/md/CL/50/CL_0002050.md index 1e728dbb4b..aa8f182ed7 100644 --- a/md/CL/50/CL_0002050.md +++ b/md/CL/50/CL_0002050.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002150.md b/md/CL/50/CL_0002150.md index 9ceac5e02b..1e6e9c7757 100644 --- a/md/CL/50/CL_0002150.md +++ b/md/CL/50/CL_0002150.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002250.md b/md/CL/50/CL_0002250.md index 0d4db0890e..9629676af8 100644 --- a/md/CL/50/CL_0002250.md +++ b/md/CL/50/CL_0002250.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002350.md b/md/CL/50/CL_0002350.md index dc14c2caf3..16cf320986 100644 --- a/md/CL/50/CL_0002350.md +++ b/md/CL/50/CL_0002350.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002450.md b/md/CL/50/CL_0002450.md index 738ec5c6cd..b498c11cf7 100644 --- a/md/CL/50/CL_0002450.md +++ b/md/CL/50/CL_0002450.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002550.md b/md/CL/50/CL_0002550.md index 0e797393f0..b0b9fdbf08 100644 --- a/md/CL/50/CL_0002550.md +++ b/md/CL/50/CL_0002550.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_0002650.md b/md/CL/50/CL_0002650.md index 5440e5e591..8aadc8c9f8 100644 --- a/md/CL/50/CL_0002650.md +++ b/md/CL/50/CL_0002650.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_1000350.md b/md/CL/50/CL_1000350.md index 1c7c33925f..5d063148ee 100644 --- a/md/CL/50/CL_1000350.md +++ b/md/CL/50/CL_1000350.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_1000450.md b/md/CL/50/CL_1000450.md index 4fd946f017..7c7a14166f 100644 --- a/md/CL/50/CL_1000450.md +++ b/md/CL/50/CL_1000450.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_1000550.md b/md/CL/50/CL_1000550.md index 2762868bde..53878cdeca 100644 --- a/md/CL/50/CL_1000550.md +++ b/md/CL/50/CL_1000550.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/50/CL_1000850.md b/md/CL/50/CL_1000850.md index 7f9f9d504c..d9dea8abe4 100644 --- a/md/CL/50/CL_1000850.md +++ b/md/CL/50/CL_1000850.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000051.md b/md/CL/51/CL_0000051.md index b1df133805..452b810b94 100644 --- a/md/CL/51/CL_0000051.md +++ b/md/CL/51/CL_0000051.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000151.md b/md/CL/51/CL_0000151.md index 34cd12a55f..c2dab2e448 100644 --- a/md/CL/51/CL_0000151.md +++ b/md/CL/51/CL_0000151.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000251.md b/md/CL/51/CL_0000251.md index b6e79fb273..abc4277373 100644 --- a/md/CL/51/CL_0000251.md +++ b/md/CL/51/CL_0000251.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000351.md b/md/CL/51/CL_0000351.md index 059c0fe02a..504a71df9e 100644 --- a/md/CL/51/CL_0000351.md +++ b/md/CL/51/CL_0000351.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000451.md b/md/CL/51/CL_0000451.md index 792002e6d6..2ed6aa7268 100644 --- a/md/CL/51/CL_0000451.md +++ b/md/CL/51/CL_0000451.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000551.md b/md/CL/51/CL_0000551.md index 5102794490..11b340f84d 100644 --- a/md/CL/51/CL_0000551.md +++ b/md/CL/51/CL_0000551.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000651.md b/md/CL/51/CL_0000651.md index 379d460dd3..4b844f7237 100644 --- a/md/CL/51/CL_0000651.md +++ b/md/CL/51/CL_0000651.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000751.md b/md/CL/51/CL_0000751.md index 7b8c2d9ab5..51b5a8981a 100644 --- a/md/CL/51/CL_0000751.md +++ b/md/CL/51/CL_0000751.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000851.md b/md/CL/51/CL_0000851.md index 7a0506736e..7fe957966a 100644 --- a/md/CL/51/CL_0000851.md +++ b/md/CL/51/CL_0000851.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0000951.md b/md/CL/51/CL_0000951.md index 7dc91035db..7b15fb73ba 100644 --- a/md/CL/51/CL_0000951.md +++ b/md/CL/51/CL_0000951.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002051.md b/md/CL/51/CL_0002051.md index a52a06c43b..8f9ec924d4 100644 --- a/md/CL/51/CL_0002051.md +++ b/md/CL/51/CL_0002051.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002151.md b/md/CL/51/CL_0002151.md index b8ec386037..16434dfa2b 100644 --- a/md/CL/51/CL_0002151.md +++ b/md/CL/51/CL_0002151.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002251.md b/md/CL/51/CL_0002251.md index 78ecc5dca1..23e62b473e 100644 --- a/md/CL/51/CL_0002251.md +++ b/md/CL/51/CL_0002251.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002351.md b/md/CL/51/CL_0002351.md index 3507e654f6..d9f1e2c7e1 100644 --- a/md/CL/51/CL_0002351.md +++ b/md/CL/51/CL_0002351.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002451.md b/md/CL/51/CL_0002451.md index 1dc4b907ab..6a60167193 100644 --- a/md/CL/51/CL_0002451.md +++ b/md/CL/51/CL_0002451.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002551.md b/md/CL/51/CL_0002551.md index e80e7dcde1..ed3bfaec06 100644 --- a/md/CL/51/CL_0002551.md +++ b/md/CL/51/CL_0002551.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_0002651.md b/md/CL/51/CL_0002651.md index 7add85caf3..b80ca48200 100644 --- a/md/CL/51/CL_0002651.md +++ b/md/CL/51/CL_0002651.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_1000351.md b/md/CL/51/CL_1000351.md index 96e53a5381..c3c74679dc 100644 --- a/md/CL/51/CL_1000351.md +++ b/md/CL/51/CL_1000351.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_1000451.md b/md/CL/51/CL_1000451.md index 45219e258f..8827795ef5 100644 --- a/md/CL/51/CL_1000451.md +++ b/md/CL/51/CL_1000451.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/51/CL_1001451.md b/md/CL/51/CL_1001451.md index 2bc3438a89..8744d9b5fd 100644 --- a/md/CL/51/CL_1001451.md +++ b/md/CL/51/CL_1001451.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000052.md b/md/CL/52/CL_0000052.md index 8e9e99f8c7..cb1814827b 100644 --- a/md/CL/52/CL_0000052.md +++ b/md/CL/52/CL_0000052.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000152.md b/md/CL/52/CL_0000152.md index 7f5d78b85e..3b81f64418 100644 --- a/md/CL/52/CL_0000152.md +++ b/md/CL/52/CL_0000152.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000352.md b/md/CL/52/CL_0000352.md index 9716108e40..75d4070089 100644 --- a/md/CL/52/CL_0000352.md +++ b/md/CL/52/CL_0000352.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000452.md b/md/CL/52/CL_0000452.md index f9b097e21c..b64a9c2d82 100644 --- a/md/CL/52/CL_0000452.md +++ b/md/CL/52/CL_0000452.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000552.md b/md/CL/52/CL_0000552.md index 03f096e7d0..2ac90b291a 100644 --- a/md/CL/52/CL_0000552.md +++ b/md/CL/52/CL_0000552.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000652.md b/md/CL/52/CL_0000652.md index bfa2eb257d..8d1b81a841 100644 --- a/md/CL/52/CL_0000652.md +++ b/md/CL/52/CL_0000652.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000752.md b/md/CL/52/CL_0000752.md index e33127c600..892b8b9772 100644 --- a/md/CL/52/CL_0000752.md +++ b/md/CL/52/CL_0000752.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000852.md b/md/CL/52/CL_0000852.md index 8aa06babd6..093f53bc24 100644 --- a/md/CL/52/CL_0000852.md +++ b/md/CL/52/CL_0000852.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0000952.md b/md/CL/52/CL_0000952.md index e2bbb25394..667a0abe50 100644 --- a/md/CL/52/CL_0000952.md +++ b/md/CL/52/CL_0000952.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002052.md b/md/CL/52/CL_0002052.md index 76b1f2e615..4e0bef5a9e 100644 --- a/md/CL/52/CL_0002052.md +++ b/md/CL/52/CL_0002052.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002152.md b/md/CL/52/CL_0002152.md index 69efa790a4..76b2aede4a 100644 --- a/md/CL/52/CL_0002152.md +++ b/md/CL/52/CL_0002152.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002252.md b/md/CL/52/CL_0002252.md index cabf4cd440..0a3c153100 100644 --- a/md/CL/52/CL_0002252.md +++ b/md/CL/52/CL_0002252.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002352.md b/md/CL/52/CL_0002352.md index 47a6ddb220..a4ecfd2f4e 100644 --- a/md/CL/52/CL_0002352.md +++ b/md/CL/52/CL_0002352.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002552.md b/md/CL/52/CL_0002552.md index 74880ae47d..ceb3309203 100644 --- a/md/CL/52/CL_0002552.md +++ b/md/CL/52/CL_0002552.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_0002652.md b/md/CL/52/CL_0002652.md index ae97e0b0ae..19b9b766e8 100644 --- a/md/CL/52/CL_0002652.md +++ b/md/CL/52/CL_0002652.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_1000352.md b/md/CL/52/CL_1000352.md index 9336eb7356..f418b71984 100644 --- a/md/CL/52/CL_1000352.md +++ b/md/CL/52/CL_1000352.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_1000452.md b/md/CL/52/CL_1000452.md index 561eb9ab22..60f2076a7d 100644 --- a/md/CL/52/CL_1000452.md +++ b/md/CL/52/CL_1000452.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/52/CL_1001052.md b/md/CL/52/CL_1001052.md index a43dd792b4..15118732dc 100644 --- a/md/CL/52/CL_1001052.md +++ b/md/CL/52/CL_1001052.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000153.md b/md/CL/53/CL_0000153.md index 6588712cbe..2a95e7bf8b 100644 --- a/md/CL/53/CL_0000153.md +++ b/md/CL/53/CL_0000153.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000253.md b/md/CL/53/CL_0000253.md index 72e8111314..b5799143f5 100644 --- a/md/CL/53/CL_0000253.md +++ b/md/CL/53/CL_0000253.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000353.md b/md/CL/53/CL_0000353.md index 698e1fa7ad..0f9af8decc 100644 --- a/md/CL/53/CL_0000353.md +++ b/md/CL/53/CL_0000353.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000453.md b/md/CL/53/CL_0000453.md index da545c0e2c..42a8973a25 100644 --- a/md/CL/53/CL_0000453.md +++ b/md/CL/53/CL_0000453.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000553.md b/md/CL/53/CL_0000553.md index f6d14ad216..e48ff8b1c3 100644 --- a/md/CL/53/CL_0000553.md +++ b/md/CL/53/CL_0000553.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000653.md b/md/CL/53/CL_0000653.md index 9432c9fef6..05293470ae 100644 --- a/md/CL/53/CL_0000653.md +++ b/md/CL/53/CL_0000653.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000753.md b/md/CL/53/CL_0000753.md index 6edfa29c1a..6cfe62bf03 100644 --- a/md/CL/53/CL_0000753.md +++ b/md/CL/53/CL_0000753.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000853.md b/md/CL/53/CL_0000853.md index 5ffabc0573..e2690adb3f 100644 --- a/md/CL/53/CL_0000853.md +++ b/md/CL/53/CL_0000853.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0000953.md b/md/CL/53/CL_0000953.md index e3c86cee6d..febf962d97 100644 --- a/md/CL/53/CL_0000953.md +++ b/md/CL/53/CL_0000953.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002053.md b/md/CL/53/CL_0002053.md index 3951b43577..e1a1af917c 100644 --- a/md/CL/53/CL_0002053.md +++ b/md/CL/53/CL_0002053.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002153.md b/md/CL/53/CL_0002153.md index 2a06f0c584..63ab1575bc 100644 --- a/md/CL/53/CL_0002153.md +++ b/md/CL/53/CL_0002153.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002253.md b/md/CL/53/CL_0002253.md index c59acba00c..a3e42789f2 100644 --- a/md/CL/53/CL_0002253.md +++ b/md/CL/53/CL_0002253.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002353.md b/md/CL/53/CL_0002353.md index 29ea05cfbc..f47892531e 100644 --- a/md/CL/53/CL_0002353.md +++ b/md/CL/53/CL_0002353.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002453.md b/md/CL/53/CL_0002453.md index d01c6d4ad7..a169cda4e5 100644 --- a/md/CL/53/CL_0002453.md +++ b/md/CL/53/CL_0002453.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002553.md b/md/CL/53/CL_0002553.md index dab18e04d1..9c6ca75c70 100644 --- a/md/CL/53/CL_0002553.md +++ b/md/CL/53/CL_0002553.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_0002653.md b/md/CL/53/CL_0002653.md index ee6ab5d125..07e8cf3d86 100644 --- a/md/CL/53/CL_0002653.md +++ b/md/CL/53/CL_0002653.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_1000353.md b/md/CL/53/CL_1000353.md index 07e40efd96..9ceb4c3642 100644 --- a/md/CL/53/CL_1000353.md +++ b/md/CL/53/CL_1000353.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/53/CL_1000453.md b/md/CL/53/CL_1000453.md index fd6f2db765..a3b11b73b9 100644 --- a/md/CL/53/CL_1000453.md +++ b/md/CL/53/CL_1000453.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000054.md b/md/CL/54/CL_0000054.md index 1c5978aa28..ea195926e7 100644 --- a/md/CL/54/CL_0000054.md +++ b/md/CL/54/CL_0000054.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000154.md b/md/CL/54/CL_0000154.md index 93d5e10404..71e04e40fe 100644 --- a/md/CL/54/CL_0000154.md +++ b/md/CL/54/CL_0000154.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000354.md b/md/CL/54/CL_0000354.md index 70aa7282e0..dcb78484a1 100644 --- a/md/CL/54/CL_0000354.md +++ b/md/CL/54/CL_0000354.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000454.md b/md/CL/54/CL_0000454.md index 07ff74a95f..769959a435 100644 --- a/md/CL/54/CL_0000454.md +++ b/md/CL/54/CL_0000454.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000554.md b/md/CL/54/CL_0000554.md index 3963296b21..dcef68667e 100644 --- a/md/CL/54/CL_0000554.md +++ b/md/CL/54/CL_0000554.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000654.md b/md/CL/54/CL_0000654.md index a1a0321ade..2957ba4632 100644 --- a/md/CL/54/CL_0000654.md +++ b/md/CL/54/CL_0000654.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000754.md b/md/CL/54/CL_0000754.md index 2d8287b677..41cf20c17b 100644 --- a/md/CL/54/CL_0000754.md +++ b/md/CL/54/CL_0000754.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000854.md b/md/CL/54/CL_0000854.md index 868333408b..a19f777a20 100644 --- a/md/CL/54/CL_0000854.md +++ b/md/CL/54/CL_0000854.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0000954.md b/md/CL/54/CL_0000954.md index 4336a1fc59..17543791c9 100644 --- a/md/CL/54/CL_0000954.md +++ b/md/CL/54/CL_0000954.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002054.md b/md/CL/54/CL_0002054.md index 757597382c..571ef2f200 100644 --- a/md/CL/54/CL_0002054.md +++ b/md/CL/54/CL_0002054.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002154.md b/md/CL/54/CL_0002154.md index 4fca33e1a6..a315543178 100644 --- a/md/CL/54/CL_0002154.md +++ b/md/CL/54/CL_0002154.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002254.md b/md/CL/54/CL_0002254.md index 895a3a3722..53a0120b61 100644 --- a/md/CL/54/CL_0002254.md +++ b/md/CL/54/CL_0002254.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002354.md b/md/CL/54/CL_0002354.md index 71f5750480..a116617f58 100644 --- a/md/CL/54/CL_0002354.md +++ b/md/CL/54/CL_0002354.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002454.md b/md/CL/54/CL_0002454.md index ce610e185f..089aec626d 100644 --- a/md/CL/54/CL_0002454.md +++ b/md/CL/54/CL_0002454.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002554.md b/md/CL/54/CL_0002554.md index a911048705..92eee2b4bf 100644 --- a/md/CL/54/CL_0002554.md +++ b/md/CL/54/CL_0002554.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_0002654.md b/md/CL/54/CL_0002654.md index 8fd82d6f36..afe929cc0e 100644 --- a/md/CL/54/CL_0002654.md +++ b/md/CL/54/CL_0002654.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_1000354.md b/md/CL/54/CL_1000354.md index b579ea767f..1bac54f109 100644 --- a/md/CL/54/CL_1000354.md +++ b/md/CL/54/CL_1000354.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_1000454.md b/md/CL/54/CL_1000454.md index a9f801cc78..cdd185a0a0 100644 --- a/md/CL/54/CL_1000454.md +++ b/md/CL/54/CL_1000454.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/54/CL_1000854.md b/md/CL/54/CL_1000854.md index e3b6de4d4c..4d7fcd8f5c 100644 --- a/md/CL/54/CL_1000854.md +++ b/md/CL/54/CL_1000854.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000055.md b/md/CL/55/CL_0000055.md index 3f6f85b8d3..448ea61d8e 100644 --- a/md/CL/55/CL_0000055.md +++ b/md/CL/55/CL_0000055.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000155.md b/md/CL/55/CL_0000155.md index 7532f6b6dd..55648a64e7 100644 --- a/md/CL/55/CL_0000155.md +++ b/md/CL/55/CL_0000155.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000255.md b/md/CL/55/CL_0000255.md index a189fe85da..ec43ed431b 100644 --- a/md/CL/55/CL_0000255.md +++ b/md/CL/55/CL_0000255.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000355.md b/md/CL/55/CL_0000355.md index aa003eeabe..e6ee8fa697 100644 --- a/md/CL/55/CL_0000355.md +++ b/md/CL/55/CL_0000355.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000555.md b/md/CL/55/CL_0000555.md index ce2fcb8341..98d7215526 100644 --- a/md/CL/55/CL_0000555.md +++ b/md/CL/55/CL_0000555.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000655.md b/md/CL/55/CL_0000655.md index 5595a3cd39..1e2a7df0a6 100644 --- a/md/CL/55/CL_0000655.md +++ b/md/CL/55/CL_0000655.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000755.md b/md/CL/55/CL_0000755.md index e4d9dd77de..9315ac1665 100644 --- a/md/CL/55/CL_0000755.md +++ b/md/CL/55/CL_0000755.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000855.md b/md/CL/55/CL_0000855.md index fa62850a27..c2a53ffc1c 100644 --- a/md/CL/55/CL_0000855.md +++ b/md/CL/55/CL_0000855.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0000955.md b/md/CL/55/CL_0000955.md index eddf58641f..4efcbd7fa4 100644 --- a/md/CL/55/CL_0000955.md +++ b/md/CL/55/CL_0000955.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002055.md b/md/CL/55/CL_0002055.md index dd77d7f955..18b06d1900 100644 --- a/md/CL/55/CL_0002055.md +++ b/md/CL/55/CL_0002055.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002155.md b/md/CL/55/CL_0002155.md index 86f6da0c4d..0e47a3103d 100644 --- a/md/CL/55/CL_0002155.md +++ b/md/CL/55/CL_0002155.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002255.md b/md/CL/55/CL_0002255.md index 6380ba1626..929e40d13d 100644 --- a/md/CL/55/CL_0002255.md +++ b/md/CL/55/CL_0002255.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002355.md b/md/CL/55/CL_0002355.md index 5dbebbbf06..ab6398ac00 100644 --- a/md/CL/55/CL_0002355.md +++ b/md/CL/55/CL_0002355.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002455.md b/md/CL/55/CL_0002455.md index e3472db05a..7fbfb7eceb 100644 --- a/md/CL/55/CL_0002455.md +++ b/md/CL/55/CL_0002455.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002555.md b/md/CL/55/CL_0002555.md index 9caa6da510..94dd3c7774 100644 --- a/md/CL/55/CL_0002555.md +++ b/md/CL/55/CL_0002555.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_0002655.md b/md/CL/55/CL_0002655.md index 8fa88dcd18..34499034ba 100644 --- a/md/CL/55/CL_0002655.md +++ b/md/CL/55/CL_0002655.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/55/CL_1000355.md b/md/CL/55/CL_1000355.md index 7d27707779..7fe4526b81 100644 --- a/md/CL/55/CL_1000355.md +++ b/md/CL/55/CL_1000355.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000056.md b/md/CL/56/CL_0000056.md index 199738ec70..e25257b07e 100644 --- a/md/CL/56/CL_0000056.md +++ b/md/CL/56/CL_0000056.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000256.md b/md/CL/56/CL_0000256.md index 3c8752f7b3..4d00f9c853 100644 --- a/md/CL/56/CL_0000256.md +++ b/md/CL/56/CL_0000256.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000356.md b/md/CL/56/CL_0000356.md index 3ef58d9ff8..2d0d8f966d 100644 --- a/md/CL/56/CL_0000356.md +++ b/md/CL/56/CL_0000356.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000456.md b/md/CL/56/CL_0000456.md index 2e2f83b6fc..b78be7cf18 100644 --- a/md/CL/56/CL_0000456.md +++ b/md/CL/56/CL_0000456.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000556.md b/md/CL/56/CL_0000556.md index 06863e5809..8c7e89585c 100644 --- a/md/CL/56/CL_0000556.md +++ b/md/CL/56/CL_0000556.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000656.md b/md/CL/56/CL_0000656.md index 70ade3d929..482fc3ac0b 100644 --- a/md/CL/56/CL_0000656.md +++ b/md/CL/56/CL_0000656.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000756.md b/md/CL/56/CL_0000756.md index 8f2d3a836b..5a5383258a 100644 --- a/md/CL/56/CL_0000756.md +++ b/md/CL/56/CL_0000756.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000856.md b/md/CL/56/CL_0000856.md index 9d40e65fd1..ab32e11f4e 100644 --- a/md/CL/56/CL_0000856.md +++ b/md/CL/56/CL_0000856.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0000956.md b/md/CL/56/CL_0000956.md index 2313ffd148..53383783a7 100644 --- a/md/CL/56/CL_0000956.md +++ b/md/CL/56/CL_0000956.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002056.md b/md/CL/56/CL_0002056.md index 29409d4d20..309fc841b6 100644 --- a/md/CL/56/CL_0002056.md +++ b/md/CL/56/CL_0002056.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002256.md b/md/CL/56/CL_0002256.md index 167730fe94..a46ad2de0c 100644 --- a/md/CL/56/CL_0002256.md +++ b/md/CL/56/CL_0002256.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002356.md b/md/CL/56/CL_0002356.md index 14f8b85e55..22815ba412 100644 --- a/md/CL/56/CL_0002356.md +++ b/md/CL/56/CL_0002356.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002456.md b/md/CL/56/CL_0002456.md index 1d78602510..cf64718b12 100644 --- a/md/CL/56/CL_0002456.md +++ b/md/CL/56/CL_0002456.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002556.md b/md/CL/56/CL_0002556.md index bd484d7911..1261fa668c 100644 --- a/md/CL/56/CL_0002556.md +++ b/md/CL/56/CL_0002556.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_0002656.md b/md/CL/56/CL_0002656.md index 2ffa46b71d..91ffa70a86 100644 --- a/md/CL/56/CL_0002656.md +++ b/md/CL/56/CL_0002656.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_1000356.md b/md/CL/56/CL_1000356.md index 786e2315ff..64b2896095 100644 --- a/md/CL/56/CL_1000356.md +++ b/md/CL/56/CL_1000356.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/56/CL_1000456.md b/md/CL/56/CL_1000456.md index 4a3aee23b8..39e9942776 100644 --- a/md/CL/56/CL_1000456.md +++ b/md/CL/56/CL_1000456.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000057.md b/md/CL/57/CL_0000057.md index e27864fc4d..abf9562771 100644 --- a/md/CL/57/CL_0000057.md +++ b/md/CL/57/CL_0000057.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000157.md b/md/CL/57/CL_0000157.md index aecb6c2bfb..9755912878 100644 --- a/md/CL/57/CL_0000157.md +++ b/md/CL/57/CL_0000157.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000257.md b/md/CL/57/CL_0000257.md index dbc561ea60..fc99d22e7d 100644 --- a/md/CL/57/CL_0000257.md +++ b/md/CL/57/CL_0000257.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000357.md b/md/CL/57/CL_0000357.md index 42d8f8e7d1..0ab9468bcf 100644 --- a/md/CL/57/CL_0000357.md +++ b/md/CL/57/CL_0000357.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000457.md b/md/CL/57/CL_0000457.md index 3118fb3cb6..dfdfd79887 100644 --- a/md/CL/57/CL_0000457.md +++ b/md/CL/57/CL_0000457.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000557.md b/md/CL/57/CL_0000557.md index 231ec9de5c..61f42fc4f2 100644 --- a/md/CL/57/CL_0000557.md +++ b/md/CL/57/CL_0000557.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000657.md b/md/CL/57/CL_0000657.md index f585cefdd9..6c871c54e8 100644 --- a/md/CL/57/CL_0000657.md +++ b/md/CL/57/CL_0000657.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000757.md b/md/CL/57/CL_0000757.md index f5ae11eadc..ec6e5ffca2 100644 --- a/md/CL/57/CL_0000757.md +++ b/md/CL/57/CL_0000757.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000857.md b/md/CL/57/CL_0000857.md index 1fa6183ab7..1f2f69113e 100644 --- a/md/CL/57/CL_0000857.md +++ b/md/CL/57/CL_0000857.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0000957.md b/md/CL/57/CL_0000957.md index 64f85d067c..ff38f9b3d9 100644 --- a/md/CL/57/CL_0000957.md +++ b/md/CL/57/CL_0000957.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002057.md b/md/CL/57/CL_0002057.md index 66124c0007..6ff65a6719 100644 --- a/md/CL/57/CL_0002057.md +++ b/md/CL/57/CL_0002057.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002157.md b/md/CL/57/CL_0002157.md index b4a195915c..7f0cc29ce8 100644 --- a/md/CL/57/CL_0002157.md +++ b/md/CL/57/CL_0002157.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002257.md b/md/CL/57/CL_0002257.md index d1cc96d03e..50115b7224 100644 --- a/md/CL/57/CL_0002257.md +++ b/md/CL/57/CL_0002257.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002357.md b/md/CL/57/CL_0002357.md index 873744fedb..d9b56055ba 100644 --- a/md/CL/57/CL_0002357.md +++ b/md/CL/57/CL_0002357.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002457.md b/md/CL/57/CL_0002457.md index 93616bd9d1..e3c0431103 100644 --- a/md/CL/57/CL_0002457.md +++ b/md/CL/57/CL_0002457.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002557.md b/md/CL/57/CL_0002557.md index 564f80f75b..e5e4ebdd2d 100644 --- a/md/CL/57/CL_0002557.md +++ b/md/CL/57/CL_0002557.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_0002657.md b/md/CL/57/CL_0002657.md index 0c8a930235..fa568f740e 100644 --- a/md/CL/57/CL_0002657.md +++ b/md/CL/57/CL_0002657.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_1000357.md b/md/CL/57/CL_1000357.md index a4d3a46bf2..27f27fd204 100644 --- a/md/CL/57/CL_1000357.md +++ b/md/CL/57/CL_1000357.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/57/CL_1000457.md b/md/CL/57/CL_1000457.md index 615af4a78c..47c3f3b149 100644 --- a/md/CL/57/CL_1000457.md +++ b/md/CL/57/CL_1000457.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000058.md b/md/CL/58/CL_0000058.md index 99f4d28ed0..006e55b32d 100644 --- a/md/CL/58/CL_0000058.md +++ b/md/CL/58/CL_0000058.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000158.md b/md/CL/58/CL_0000158.md index a7e3edfe5d..c0a98a70f8 100644 --- a/md/CL/58/CL_0000158.md +++ b/md/CL/58/CL_0000158.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000358.md b/md/CL/58/CL_0000358.md index 225ccf8981..ee92863329 100644 --- a/md/CL/58/CL_0000358.md +++ b/md/CL/58/CL_0000358.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000458.md b/md/CL/58/CL_0000458.md index 3dba0c20ce..5231e65eed 100644 --- a/md/CL/58/CL_0000458.md +++ b/md/CL/58/CL_0000458.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000558.md b/md/CL/58/CL_0000558.md index 90aad14110..628576def9 100644 --- a/md/CL/58/CL_0000558.md +++ b/md/CL/58/CL_0000558.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000658.md b/md/CL/58/CL_0000658.md index fc7dda5b29..e0dc259f26 100644 --- a/md/CL/58/CL_0000658.md +++ b/md/CL/58/CL_0000658.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000758.md b/md/CL/58/CL_0000758.md index 7bbd00dd95..bd98a99157 100644 --- a/md/CL/58/CL_0000758.md +++ b/md/CL/58/CL_0000758.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000858.md b/md/CL/58/CL_0000858.md index 5d8b979900..b11f71990f 100644 --- a/md/CL/58/CL_0000858.md +++ b/md/CL/58/CL_0000858.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0000958.md b/md/CL/58/CL_0000958.md index 5ed578b94e..3f83e889c8 100644 --- a/md/CL/58/CL_0000958.md +++ b/md/CL/58/CL_0000958.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0001658.md b/md/CL/58/CL_0001658.md index 6e5ba04882..5c01bbac3a 100644 --- a/md/CL/58/CL_0001658.md +++ b/md/CL/58/CL_0001658.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002058.md b/md/CL/58/CL_0002058.md index 381f97166b..86c373da10 100644 --- a/md/CL/58/CL_0002058.md +++ b/md/CL/58/CL_0002058.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002158.md b/md/CL/58/CL_0002158.md index 8099b291aa..95cf0d420c 100644 --- a/md/CL/58/CL_0002158.md +++ b/md/CL/58/CL_0002158.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002258.md b/md/CL/58/CL_0002258.md index 3c655dfd61..cbcd07b34d 100644 --- a/md/CL/58/CL_0002258.md +++ b/md/CL/58/CL_0002258.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002358.md b/md/CL/58/CL_0002358.md index 9f070c40b7..0a05e0ce70 100644 --- a/md/CL/58/CL_0002358.md +++ b/md/CL/58/CL_0002358.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002458.md b/md/CL/58/CL_0002458.md index 549a029314..d302cb2530 100644 --- a/md/CL/58/CL_0002458.md +++ b/md/CL/58/CL_0002458.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002558.md b/md/CL/58/CL_0002558.md index c74a83ad69..08bcf3361b 100644 --- a/md/CL/58/CL_0002558.md +++ b/md/CL/58/CL_0002558.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_0002658.md b/md/CL/58/CL_0002658.md index 5e7d84102a..c35f2495b9 100644 --- a/md/CL/58/CL_0002658.md +++ b/md/CL/58/CL_0002658.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_1000358.md b/md/CL/58/CL_1000358.md index 0015060be6..7d0a31d534 100644 --- a/md/CL/58/CL_1000358.md +++ b/md/CL/58/CL_1000358.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/58/CL_1000458.md b/md/CL/58/CL_1000458.md index 42d4ec3094..05099c7302 100644 --- a/md/CL/58/CL_1000458.md +++ b/md/CL/58/CL_1000458.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000059.md b/md/CL/59/CL_0000059.md index 5feea3f690..df537dbeed 100644 --- a/md/CL/59/CL_0000059.md +++ b/md/CL/59/CL_0000059.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000159.md b/md/CL/59/CL_0000159.md index 409a69370b..2ab51eb258 100644 --- a/md/CL/59/CL_0000159.md +++ b/md/CL/59/CL_0000159.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000259.md b/md/CL/59/CL_0000259.md index cd58e61626..c5791a9bc4 100644 --- a/md/CL/59/CL_0000259.md +++ b/md/CL/59/CL_0000259.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000359.md b/md/CL/59/CL_0000359.md index e0ca06e2f9..dcc796c070 100644 --- a/md/CL/59/CL_0000359.md +++ b/md/CL/59/CL_0000359.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000459.md b/md/CL/59/CL_0000459.md index 1b1d832701..df5d86e904 100644 --- a/md/CL/59/CL_0000459.md +++ b/md/CL/59/CL_0000459.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000559.md b/md/CL/59/CL_0000559.md index 63a1ac02c6..75162821aa 100644 --- a/md/CL/59/CL_0000559.md +++ b/md/CL/59/CL_0000559.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000659.md b/md/CL/59/CL_0000659.md index ee6c241cc5..20b103d131 100644 --- a/md/CL/59/CL_0000659.md +++ b/md/CL/59/CL_0000659.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000759.md b/md/CL/59/CL_0000759.md index 25479f8c4a..87e1d59953 100644 --- a/md/CL/59/CL_0000759.md +++ b/md/CL/59/CL_0000759.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0000959.md b/md/CL/59/CL_0000959.md index d8efa04a14..b7c9eacb28 100644 --- a/md/CL/59/CL_0000959.md +++ b/md/CL/59/CL_0000959.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002059.md b/md/CL/59/CL_0002059.md index 3f788fcbbe..1186d0cf52 100644 --- a/md/CL/59/CL_0002059.md +++ b/md/CL/59/CL_0002059.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002159.md b/md/CL/59/CL_0002159.md index 0ea670bfd5..ffc67bb9ad 100644 --- a/md/CL/59/CL_0002159.md +++ b/md/CL/59/CL_0002159.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002259.md b/md/CL/59/CL_0002259.md index 36d915a65a..045edf4c0c 100644 --- a/md/CL/59/CL_0002259.md +++ b/md/CL/59/CL_0002259.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002359.md b/md/CL/59/CL_0002359.md index faf41a1010..b620477479 100644 --- a/md/CL/59/CL_0002359.md +++ b/md/CL/59/CL_0002359.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002459.md b/md/CL/59/CL_0002459.md index c7857fe82e..7197fa372a 100644 --- a/md/CL/59/CL_0002459.md +++ b/md/CL/59/CL_0002459.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002559.md b/md/CL/59/CL_0002559.md index d80836933d..537b882d03 100644 --- a/md/CL/59/CL_0002559.md +++ b/md/CL/59/CL_0002559.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_0002659.md b/md/CL/59/CL_0002659.md index 8ce34153bf..f4d90d1edc 100644 --- a/md/CL/59/CL_0002659.md +++ b/md/CL/59/CL_0002659.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/59/CL_1000359.md b/md/CL/59/CL_1000359.md index 0226535ba3..9032bd7158 100644 --- a/md/CL/59/CL_1000359.md +++ b/md/CL/59/CL_1000359.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000060.md b/md/CL/60/CL_0000060.md index 39b0d7773e..e9489d8dd7 100644 --- a/md/CL/60/CL_0000060.md +++ b/md/CL/60/CL_0000060.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000160.md b/md/CL/60/CL_0000160.md index 34bf74468f..aba9afa195 100644 --- a/md/CL/60/CL_0000160.md +++ b/md/CL/60/CL_0000160.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000360.md b/md/CL/60/CL_0000360.md index 1249ab9231..64a50d1be3 100644 --- a/md/CL/60/CL_0000360.md +++ b/md/CL/60/CL_0000360.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000460.md b/md/CL/60/CL_0000460.md index e972cef71b..7770ab504f 100644 --- a/md/CL/60/CL_0000460.md +++ b/md/CL/60/CL_0000460.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000560.md b/md/CL/60/CL_0000560.md index 27df4f24a9..7be6afca09 100644 --- a/md/CL/60/CL_0000560.md +++ b/md/CL/60/CL_0000560.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000660.md b/md/CL/60/CL_0000660.md index e56eef0796..ec09e73231 100644 --- a/md/CL/60/CL_0000660.md +++ b/md/CL/60/CL_0000660.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000760.md b/md/CL/60/CL_0000760.md index 1086940b4d..a3f5741e8b 100644 --- a/md/CL/60/CL_0000760.md +++ b/md/CL/60/CL_0000760.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000860.md b/md/CL/60/CL_0000860.md index c2925cf275..2e83cea8d6 100644 --- a/md/CL/60/CL_0000860.md +++ b/md/CL/60/CL_0000860.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0000960.md b/md/CL/60/CL_0000960.md index 82921cae55..73ffa9cbc5 100644 --- a/md/CL/60/CL_0000960.md +++ b/md/CL/60/CL_0000960.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002060.md b/md/CL/60/CL_0002060.md index c70c5597ac..f5a651f8b5 100644 --- a/md/CL/60/CL_0002060.md +++ b/md/CL/60/CL_0002060.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002160.md b/md/CL/60/CL_0002160.md index a223e7aa45..2572a58378 100644 --- a/md/CL/60/CL_0002160.md +++ b/md/CL/60/CL_0002160.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002260.md b/md/CL/60/CL_0002260.md index e40df29350..67da5a7009 100644 --- a/md/CL/60/CL_0002260.md +++ b/md/CL/60/CL_0002260.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002360.md b/md/CL/60/CL_0002360.md index ef04069a28..f4c2867aeb 100644 --- a/md/CL/60/CL_0002360.md +++ b/md/CL/60/CL_0002360.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002460.md b/md/CL/60/CL_0002460.md index 44adaa6fdf..3e3bfc2d0d 100644 --- a/md/CL/60/CL_0002460.md +++ b/md/CL/60/CL_0002460.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002560.md b/md/CL/60/CL_0002560.md index 7cb2bb055e..4972346867 100644 --- a/md/CL/60/CL_0002560.md +++ b/md/CL/60/CL_0002560.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_0002660.md b/md/CL/60/CL_0002660.md index 02c8b78d1d..15edf1b31d 100644 --- a/md/CL/60/CL_0002660.md +++ b/md/CL/60/CL_0002660.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/60/CL_1000360.md b/md/CL/60/CL_1000360.md index 4a48d2ad95..0dd301d27c 100644 --- a/md/CL/60/CL_1000360.md +++ b/md/CL/60/CL_1000360.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000061.md b/md/CL/61/CL_0000061.md index 0075d4c1c2..a869c43d5e 100644 --- a/md/CL/61/CL_0000061.md +++ b/md/CL/61/CL_0000061.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000161.md b/md/CL/61/CL_0000161.md index 1e0da0ca49..fb43a9991a 100644 --- a/md/CL/61/CL_0000161.md +++ b/md/CL/61/CL_0000161.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000261.md b/md/CL/61/CL_0000261.md index efa50bed2a..afebb0a3b9 100644 --- a/md/CL/61/CL_0000261.md +++ b/md/CL/61/CL_0000261.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000361.md b/md/CL/61/CL_0000361.md index 5b059d4f56..8290ee34d8 100644 --- a/md/CL/61/CL_0000361.md +++ b/md/CL/61/CL_0000361.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000561.md b/md/CL/61/CL_0000561.md index 7ed41bc3d5..d9846d9cee 100644 --- a/md/CL/61/CL_0000561.md +++ b/md/CL/61/CL_0000561.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000661.md b/md/CL/61/CL_0000661.md index d05b7d23b8..d785efcc40 100644 --- a/md/CL/61/CL_0000661.md +++ b/md/CL/61/CL_0000661.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000761.md b/md/CL/61/CL_0000761.md index 8287350509..56acb44bed 100644 --- a/md/CL/61/CL_0000761.md +++ b/md/CL/61/CL_0000761.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000861.md b/md/CL/61/CL_0000861.md index e959e0fb95..7beb17a8f2 100644 --- a/md/CL/61/CL_0000861.md +++ b/md/CL/61/CL_0000861.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0000961.md b/md/CL/61/CL_0000961.md index 17959e2f13..16d1999094 100644 --- a/md/CL/61/CL_0000961.md +++ b/md/CL/61/CL_0000961.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002061.md b/md/CL/61/CL_0002061.md index e9eedba5b1..d9ef0e5850 100644 --- a/md/CL/61/CL_0002061.md +++ b/md/CL/61/CL_0002061.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002161.md b/md/CL/61/CL_0002161.md index 47bc23c6ee..566769c286 100644 --- a/md/CL/61/CL_0002161.md +++ b/md/CL/61/CL_0002161.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002261.md b/md/CL/61/CL_0002261.md index 5c45d4dc9e..bb3003107e 100644 --- a/md/CL/61/CL_0002261.md +++ b/md/CL/61/CL_0002261.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002361.md b/md/CL/61/CL_0002361.md index 29654bd5e0..365ddcd562 100644 --- a/md/CL/61/CL_0002361.md +++ b/md/CL/61/CL_0002361.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002461.md b/md/CL/61/CL_0002461.md index b06af9baea..2f986f7c37 100644 --- a/md/CL/61/CL_0002461.md +++ b/md/CL/61/CL_0002461.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002561.md b/md/CL/61/CL_0002561.md index 103b5f8b27..8f25e1a27c 100644 --- a/md/CL/61/CL_0002561.md +++ b/md/CL/61/CL_0002561.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_0002661.md b/md/CL/61/CL_0002661.md index 4982cbe265..fe5f2969e4 100644 --- a/md/CL/61/CL_0002661.md +++ b/md/CL/61/CL_0002661.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_1000361.md b/md/CL/61/CL_1000361.md index 005ac2ef5f..21978bec82 100644 --- a/md/CL/61/CL_1000361.md +++ b/md/CL/61/CL_1000361.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/61/CL_1001561.md b/md/CL/61/CL_1001561.md index fc6b9b6ade..b8afbc201b 100644 --- a/md/CL/61/CL_1001561.md +++ b/md/CL/61/CL_1001561.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000062.md b/md/CL/62/CL_0000062.md index a0cd5f1958..3c09223152 100644 --- a/md/CL/62/CL_0000062.md +++ b/md/CL/62/CL_0000062.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000162.md b/md/CL/62/CL_0000162.md index da7225eeb7..f94f750409 100644 --- a/md/CL/62/CL_0000162.md +++ b/md/CL/62/CL_0000162.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000362.md b/md/CL/62/CL_0000362.md index ef9520ae00..076311cdec 100644 --- a/md/CL/62/CL_0000362.md +++ b/md/CL/62/CL_0000362.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000462.md b/md/CL/62/CL_0000462.md index c29eb7047c..22af4cd986 100644 --- a/md/CL/62/CL_0000462.md +++ b/md/CL/62/CL_0000462.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000562.md b/md/CL/62/CL_0000562.md index b961676f6a..7493a0a61b 100644 --- a/md/CL/62/CL_0000562.md +++ b/md/CL/62/CL_0000562.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000662.md b/md/CL/62/CL_0000662.md index 3f796799e8..1259f51c61 100644 --- a/md/CL/62/CL_0000662.md +++ b/md/CL/62/CL_0000662.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000762.md b/md/CL/62/CL_0000762.md index e1e8f406f3..2231cb40b7 100644 --- a/md/CL/62/CL_0000762.md +++ b/md/CL/62/CL_0000762.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000862.md b/md/CL/62/CL_0000862.md index 22f69a902c..ffc4706ad0 100644 --- a/md/CL/62/CL_0000862.md +++ b/md/CL/62/CL_0000862.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0000962.md b/md/CL/62/CL_0000962.md index 8f9bf11269..75828e4b6d 100644 --- a/md/CL/62/CL_0000962.md +++ b/md/CL/62/CL_0000962.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002062.md b/md/CL/62/CL_0002062.md index 478f6f02b7..4cc11da16f 100644 --- a/md/CL/62/CL_0002062.md +++ b/md/CL/62/CL_0002062.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002162.md b/md/CL/62/CL_0002162.md index 6351a0fe5e..aa48d3644d 100644 --- a/md/CL/62/CL_0002162.md +++ b/md/CL/62/CL_0002162.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002262.md b/md/CL/62/CL_0002262.md index ae10647e63..76d0854ff3 100644 --- a/md/CL/62/CL_0002262.md +++ b/md/CL/62/CL_0002262.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002362.md b/md/CL/62/CL_0002362.md index dfbe4ee5e8..db3d1afc28 100644 --- a/md/CL/62/CL_0002362.md +++ b/md/CL/62/CL_0002362.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002462.md b/md/CL/62/CL_0002462.md index 93a50f3f0f..1cca3ea7d2 100644 --- a/md/CL/62/CL_0002462.md +++ b/md/CL/62/CL_0002462.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002562.md b/md/CL/62/CL_0002562.md index 26310cd8df..5cc08966f2 100644 --- a/md/CL/62/CL_0002562.md +++ b/md/CL/62/CL_0002562.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_0002662.md b/md/CL/62/CL_0002662.md index d72a8128c1..3fd500f17f 100644 --- a/md/CL/62/CL_0002662.md +++ b/md/CL/62/CL_0002662.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/62/CL_1000362.md b/md/CL/62/CL_1000362.md index 0820ef0109..c06fdb4f13 100644 --- a/md/CL/62/CL_1000362.md +++ b/md/CL/62/CL_1000362.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000163.md b/md/CL/63/CL_0000163.md index 49ac434f5d..2c642224b1 100644 --- a/md/CL/63/CL_0000163.md +++ b/md/CL/63/CL_0000163.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000263.md b/md/CL/63/CL_0000263.md index dc5fd6edaa..f4d3398998 100644 --- a/md/CL/63/CL_0000263.md +++ b/md/CL/63/CL_0000263.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000463.md b/md/CL/63/CL_0000463.md index a54078ad8c..6c30922480 100644 --- a/md/CL/63/CL_0000463.md +++ b/md/CL/63/CL_0000463.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000563.md b/md/CL/63/CL_0000563.md index 7d86074355..da20b57c6a 100644 --- a/md/CL/63/CL_0000563.md +++ b/md/CL/63/CL_0000563.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000663.md b/md/CL/63/CL_0000663.md index 3d7db39f6b..5c0308142c 100644 --- a/md/CL/63/CL_0000663.md +++ b/md/CL/63/CL_0000663.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000763.md b/md/CL/63/CL_0000763.md index d5cf2bf2b8..03c0a25990 100644 --- a/md/CL/63/CL_0000763.md +++ b/md/CL/63/CL_0000763.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000863.md b/md/CL/63/CL_0000863.md index 1ca97d0e2b..7689e7e7b0 100644 --- a/md/CL/63/CL_0000863.md +++ b/md/CL/63/CL_0000863.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0000963.md b/md/CL/63/CL_0000963.md index e7a5cace54..6a0060beb0 100644 --- a/md/CL/63/CL_0000963.md +++ b/md/CL/63/CL_0000963.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002063.md b/md/CL/63/CL_0002063.md index 50705d8638..254592f893 100644 --- a/md/CL/63/CL_0002063.md +++ b/md/CL/63/CL_0002063.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002163.md b/md/CL/63/CL_0002163.md index 639acc6241..01f40365f6 100644 --- a/md/CL/63/CL_0002163.md +++ b/md/CL/63/CL_0002163.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002263.md b/md/CL/63/CL_0002263.md index f40ac513c8..4664c5490f 100644 --- a/md/CL/63/CL_0002263.md +++ b/md/CL/63/CL_0002263.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002363.md b/md/CL/63/CL_0002363.md index cca5c89852..f5b39ac259 100644 --- a/md/CL/63/CL_0002363.md +++ b/md/CL/63/CL_0002363.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002463.md b/md/CL/63/CL_0002463.md index 7f0656fd78..59a8f09601 100644 --- a/md/CL/63/CL_0002463.md +++ b/md/CL/63/CL_0002463.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002563.md b/md/CL/63/CL_0002563.md index c5ff11f668..a756adcfbe 100644 --- a/md/CL/63/CL_0002563.md +++ b/md/CL/63/CL_0002563.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_0002663.md b/md/CL/63/CL_0002663.md index 4bca8431ea..2f94e7ae75 100644 --- a/md/CL/63/CL_0002663.md +++ b/md/CL/63/CL_0002663.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/63/CL_1000363.md b/md/CL/63/CL_1000363.md index d3be2ab4ad..95dd12dce4 100644 --- a/md/CL/63/CL_1000363.md +++ b/md/CL/63/CL_1000363.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000064.md b/md/CL/64/CL_0000064.md index 9739965e37..0a74e6e3c1 100644 --- a/md/CL/64/CL_0000064.md +++ b/md/CL/64/CL_0000064.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000164.md b/md/CL/64/CL_0000164.md index b3032cb318..a295b6cecb 100644 --- a/md/CL/64/CL_0000164.md +++ b/md/CL/64/CL_0000164.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000464.md b/md/CL/64/CL_0000464.md index ab37dbd885..1a471b5c4b 100644 --- a/md/CL/64/CL_0000464.md +++ b/md/CL/64/CL_0000464.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000564.md b/md/CL/64/CL_0000564.md index 4c2359a6c7..f36f3df83c 100644 --- a/md/CL/64/CL_0000564.md +++ b/md/CL/64/CL_0000564.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000664.md b/md/CL/64/CL_0000664.md index 6a53e3bdbe..cf03cf5b64 100644 --- a/md/CL/64/CL_0000664.md +++ b/md/CL/64/CL_0000664.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000764.md b/md/CL/64/CL_0000764.md index 7fa92ef93e..83a858d638 100644 --- a/md/CL/64/CL_0000764.md +++ b/md/CL/64/CL_0000764.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000864.md b/md/CL/64/CL_0000864.md index f258a01af4..de2699b878 100644 --- a/md/CL/64/CL_0000864.md +++ b/md/CL/64/CL_0000864.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0000964.md b/md/CL/64/CL_0000964.md index 4ecba34a72..2ecff13c53 100644 --- a/md/CL/64/CL_0000964.md +++ b/md/CL/64/CL_0000964.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002064.md b/md/CL/64/CL_0002064.md index 6fec1f460b..e26d013ce0 100644 --- a/md/CL/64/CL_0002064.md +++ b/md/CL/64/CL_0002064.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002164.md b/md/CL/64/CL_0002164.md index 9aa63d639f..b8615591bb 100644 --- a/md/CL/64/CL_0002164.md +++ b/md/CL/64/CL_0002164.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002264.md b/md/CL/64/CL_0002264.md index 0e9512751c..2157b75ec0 100644 --- a/md/CL/64/CL_0002264.md +++ b/md/CL/64/CL_0002264.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002364.md b/md/CL/64/CL_0002364.md index 5f7fe119e7..0d66fe0332 100644 --- a/md/CL/64/CL_0002364.md +++ b/md/CL/64/CL_0002364.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002464.md b/md/CL/64/CL_0002464.md index 18bc9b8863..e4e5379d2b 100644 --- a/md/CL/64/CL_0002464.md +++ b/md/CL/64/CL_0002464.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002564.md b/md/CL/64/CL_0002564.md index 5a94854887..a7a1084f12 100644 --- a/md/CL/64/CL_0002564.md +++ b/md/CL/64/CL_0002564.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_0002664.md b/md/CL/64/CL_0002664.md index 8f04ded573..0516e49959 100644 --- a/md/CL/64/CL_0002664.md +++ b/md/CL/64/CL_0002664.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_1000364.md b/md/CL/64/CL_1000364.md index 4674a5e4ce..bb421a4dfa 100644 --- a/md/CL/64/CL_1000364.md +++ b/md/CL/64/CL_1000364.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/64/CL_1001064.md b/md/CL/64/CL_1001064.md index a0bf46b81d..6ce42a14f2 100644 --- a/md/CL/64/CL_1001064.md +++ b/md/CL/64/CL_1001064.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000065.md b/md/CL/65/CL_0000065.md index 1ac67541c7..567e649d2a 100644 --- a/md/CL/65/CL_0000065.md +++ b/md/CL/65/CL_0000065.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000165.md b/md/CL/65/CL_0000165.md index bae410cac5..25c3f6fab6 100644 --- a/md/CL/65/CL_0000165.md +++ b/md/CL/65/CL_0000165.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000265.md b/md/CL/65/CL_0000265.md index 1a4b285419..5cd557f244 100644 --- a/md/CL/65/CL_0000265.md +++ b/md/CL/65/CL_0000265.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000365.md b/md/CL/65/CL_0000365.md index e0fe99f236..0fc00efbc0 100644 --- a/md/CL/65/CL_0000365.md +++ b/md/CL/65/CL_0000365.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000465.md b/md/CL/65/CL_0000465.md index 9058acd2e4..7d70dfd872 100644 --- a/md/CL/65/CL_0000465.md +++ b/md/CL/65/CL_0000465.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000565.md b/md/CL/65/CL_0000565.md index 496aa06d83..31a84935b4 100644 --- a/md/CL/65/CL_0000565.md +++ b/md/CL/65/CL_0000565.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000665.md b/md/CL/65/CL_0000665.md index 6ef946fbd1..cbda7af669 100644 --- a/md/CL/65/CL_0000665.md +++ b/md/CL/65/CL_0000665.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000765.md b/md/CL/65/CL_0000765.md index 3ca8ae13e8..913f269a05 100644 --- a/md/CL/65/CL_0000765.md +++ b/md/CL/65/CL_0000765.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000865.md b/md/CL/65/CL_0000865.md index 4d1e7bc11a..addc3d2e3c 100644 --- a/md/CL/65/CL_0000865.md +++ b/md/CL/65/CL_0000865.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0000965.md b/md/CL/65/CL_0000965.md index a5a50d9ecb..084cb655c3 100644 --- a/md/CL/65/CL_0000965.md +++ b/md/CL/65/CL_0000965.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002165.md b/md/CL/65/CL_0002165.md index 549951bbce..42a1ea6719 100644 --- a/md/CL/65/CL_0002165.md +++ b/md/CL/65/CL_0002165.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002265.md b/md/CL/65/CL_0002265.md index 323d8cd1f5..891cb69b76 100644 --- a/md/CL/65/CL_0002265.md +++ b/md/CL/65/CL_0002265.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002365.md b/md/CL/65/CL_0002365.md index 1797b92efd..997803834a 100644 --- a/md/CL/65/CL_0002365.md +++ b/md/CL/65/CL_0002365.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002465.md b/md/CL/65/CL_0002465.md index e335778b1d..29256f1bcb 100644 --- a/md/CL/65/CL_0002465.md +++ b/md/CL/65/CL_0002465.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002565.md b/md/CL/65/CL_0002565.md index 962fcf4c8d..9c8351a12e 100644 --- a/md/CL/65/CL_0002565.md +++ b/md/CL/65/CL_0002565.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_0002665.md b/md/CL/65/CL_0002665.md index 1e9075ca90..f8fa5301dd 100644 --- a/md/CL/65/CL_0002665.md +++ b/md/CL/65/CL_0002665.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_1000365.md b/md/CL/65/CL_1000365.md index fe91a90ce6..8d8edf3a31 100644 --- a/md/CL/65/CL_1000365.md +++ b/md/CL/65/CL_1000365.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/65/CL_1000465.md b/md/CL/65/CL_1000465.md index 27bf6a880b..56126db1a5 100644 --- a/md/CL/65/CL_1000465.md +++ b/md/CL/65/CL_1000465.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000066.md b/md/CL/66/CL_0000066.md index e954fd1848..cfd75a81a6 100644 --- a/md/CL/66/CL_0000066.md +++ b/md/CL/66/CL_0000066.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000166.md b/md/CL/66/CL_0000166.md index 38eddbbab3..faa3ba69ab 100644 --- a/md/CL/66/CL_0000166.md +++ b/md/CL/66/CL_0000166.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000566.md b/md/CL/66/CL_0000566.md index 53dab4af53..aaf5dd0c2f 100644 --- a/md/CL/66/CL_0000566.md +++ b/md/CL/66/CL_0000566.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000666.md b/md/CL/66/CL_0000666.md index 468a911992..cbc5e024de 100644 --- a/md/CL/66/CL_0000666.md +++ b/md/CL/66/CL_0000666.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000766.md b/md/CL/66/CL_0000766.md index efb9ca31d0..487ba531b0 100644 --- a/md/CL/66/CL_0000766.md +++ b/md/CL/66/CL_0000766.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000866.md b/md/CL/66/CL_0000866.md index 5eb0c61f5a..7446027136 100644 --- a/md/CL/66/CL_0000866.md +++ b/md/CL/66/CL_0000866.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0000966.md b/md/CL/66/CL_0000966.md index 81a1fab777..c4b57226cb 100644 --- a/md/CL/66/CL_0000966.md +++ b/md/CL/66/CL_0000966.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002066.md b/md/CL/66/CL_0002066.md index fb3c6055dd..0af772bc4e 100644 --- a/md/CL/66/CL_0002066.md +++ b/md/CL/66/CL_0002066.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002166.md b/md/CL/66/CL_0002166.md index a9dd9102af..81ace79f96 100644 --- a/md/CL/66/CL_0002166.md +++ b/md/CL/66/CL_0002166.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002266.md b/md/CL/66/CL_0002266.md index ffeee9555b..0e626a35db 100644 --- a/md/CL/66/CL_0002266.md +++ b/md/CL/66/CL_0002266.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002366.md b/md/CL/66/CL_0002366.md index 4ed3e5437f..2667c78595 100644 --- a/md/CL/66/CL_0002366.md +++ b/md/CL/66/CL_0002366.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002466.md b/md/CL/66/CL_0002466.md index 817684e7eb..970c4759a8 100644 --- a/md/CL/66/CL_0002466.md +++ b/md/CL/66/CL_0002466.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002566.md b/md/CL/66/CL_0002566.md index 549976fb8f..73d34ead8f 100644 --- a/md/CL/66/CL_0002566.md +++ b/md/CL/66/CL_0002566.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_0002666.md b/md/CL/66/CL_0002666.md index ca5fe63eea..bbe1f8cd21 100644 --- a/md/CL/66/CL_0002666.md +++ b/md/CL/66/CL_0002666.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_1000366.md b/md/CL/66/CL_1000366.md index 433109664d..d6cb089b27 100644 --- a/md/CL/66/CL_1000366.md +++ b/md/CL/66/CL_1000366.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_1000466.md b/md/CL/66/CL_1000466.md index 4d4030b213..8650833828 100644 --- a/md/CL/66/CL_1000466.md +++ b/md/CL/66/CL_1000466.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_1001066.md b/md/CL/66/CL_1001066.md index c442c07c4a..563405ef19 100644 --- a/md/CL/66/CL_1001066.md +++ b/md/CL/66/CL_1001066.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/66/CL_1001566.md b/md/CL/66/CL_1001566.md index 7a63e95c1e..6d5042c027 100644 --- a/md/CL/66/CL_1001566.md +++ b/md/CL/66/CL_1001566.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000067.md b/md/CL/67/CL_0000067.md index e403995a51..f99d93c278 100644 --- a/md/CL/67/CL_0000067.md +++ b/md/CL/67/CL_0000067.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000167.md b/md/CL/67/CL_0000167.md index d8fdca4251..8069fca9e5 100644 --- a/md/CL/67/CL_0000167.md +++ b/md/CL/67/CL_0000167.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000267.md b/md/CL/67/CL_0000267.md index ed6e16b416..1a30b02d47 100644 --- a/md/CL/67/CL_0000267.md +++ b/md/CL/67/CL_0000267.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000367.md b/md/CL/67/CL_0000367.md index 3e19c2b5ea..7fdfcdc1fc 100644 --- a/md/CL/67/CL_0000367.md +++ b/md/CL/67/CL_0000367.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000467.md b/md/CL/67/CL_0000467.md index 887db913a2..62ff8236ca 100644 --- a/md/CL/67/CL_0000467.md +++ b/md/CL/67/CL_0000467.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000567.md b/md/CL/67/CL_0000567.md index 9649c87a82..0612d685b0 100644 --- a/md/CL/67/CL_0000567.md +++ b/md/CL/67/CL_0000567.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000667.md b/md/CL/67/CL_0000667.md index ebec9a6e73..6f60cc3c1b 100644 --- a/md/CL/67/CL_0000667.md +++ b/md/CL/67/CL_0000667.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000767.md b/md/CL/67/CL_0000767.md index c575b2324b..72002cd1d7 100644 --- a/md/CL/67/CL_0000767.md +++ b/md/CL/67/CL_0000767.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000867.md b/md/CL/67/CL_0000867.md index 0a058fd2fe..5d6e887ef9 100644 --- a/md/CL/67/CL_0000867.md +++ b/md/CL/67/CL_0000867.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0000967.md b/md/CL/67/CL_0000967.md index 9e5ee11ea9..b7754cf610 100644 --- a/md/CL/67/CL_0000967.md +++ b/md/CL/67/CL_0000967.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002067.md b/md/CL/67/CL_0002067.md index 6b1295039c..b2682f1176 100644 --- a/md/CL/67/CL_0002067.md +++ b/md/CL/67/CL_0002067.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002167.md b/md/CL/67/CL_0002167.md index 174f41b378..fbc7d456dd 100644 --- a/md/CL/67/CL_0002167.md +++ b/md/CL/67/CL_0002167.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002267.md b/md/CL/67/CL_0002267.md index 6e136ae978..7821863742 100644 --- a/md/CL/67/CL_0002267.md +++ b/md/CL/67/CL_0002267.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002367.md b/md/CL/67/CL_0002367.md index 1131593c2e..216b17d2ed 100644 --- a/md/CL/67/CL_0002367.md +++ b/md/CL/67/CL_0002367.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002467.md b/md/CL/67/CL_0002467.md index 0b9c302b1e..7c9d8f1484 100644 --- a/md/CL/67/CL_0002467.md +++ b/md/CL/67/CL_0002467.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002567.md b/md/CL/67/CL_0002567.md index 44baf9cd06..1bdadf459d 100644 --- a/md/CL/67/CL_0002567.md +++ b/md/CL/67/CL_0002567.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_0002667.md b/md/CL/67/CL_0002667.md index f261a06559..654a15cbc4 100644 --- a/md/CL/67/CL_0002667.md +++ b/md/CL/67/CL_0002667.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_1000367.md b/md/CL/67/CL_1000367.md index a1588b6c9f..96b11f82e3 100644 --- a/md/CL/67/CL_1000367.md +++ b/md/CL/67/CL_1000367.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_1000467.md b/md/CL/67/CL_1000467.md index 471e627b73..cc26935f1d 100644 --- a/md/CL/67/CL_1000467.md +++ b/md/CL/67/CL_1000467.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/67/CL_1001567.md b/md/CL/67/CL_1001567.md index c624931af0..08df5b70eb 100644 --- a/md/CL/67/CL_1001567.md +++ b/md/CL/67/CL_1001567.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000068.md b/md/CL/68/CL_0000068.md index 68ea1ff41b..1d8e948133 100644 --- a/md/CL/68/CL_0000068.md +++ b/md/CL/68/CL_0000068.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000168.md b/md/CL/68/CL_0000168.md index b77a4e78a1..d23255c16a 100644 --- a/md/CL/68/CL_0000168.md +++ b/md/CL/68/CL_0000168.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000468.md b/md/CL/68/CL_0000468.md index 47662e17cc..4440ac9a0a 100644 --- a/md/CL/68/CL_0000468.md +++ b/md/CL/68/CL_0000468.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000568.md b/md/CL/68/CL_0000568.md index c058118ae4..3c394ebe82 100644 --- a/md/CL/68/CL_0000568.md +++ b/md/CL/68/CL_0000568.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000768.md b/md/CL/68/CL_0000768.md index 44e9ab5232..de372425e4 100644 --- a/md/CL/68/CL_0000768.md +++ b/md/CL/68/CL_0000768.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000868.md b/md/CL/68/CL_0000868.md index 29c514f3fa..3687c3f67e 100644 --- a/md/CL/68/CL_0000868.md +++ b/md/CL/68/CL_0000868.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0000968.md b/md/CL/68/CL_0000968.md index 00132f9536..6d314c3867 100644 --- a/md/CL/68/CL_0000968.md +++ b/md/CL/68/CL_0000968.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002068.md b/md/CL/68/CL_0002068.md index 13ab47070b..a50fad00d5 100644 --- a/md/CL/68/CL_0002068.md +++ b/md/CL/68/CL_0002068.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002168.md b/md/CL/68/CL_0002168.md index b6a77e96f3..873d848013 100644 --- a/md/CL/68/CL_0002168.md +++ b/md/CL/68/CL_0002168.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002268.md b/md/CL/68/CL_0002268.md index 0551ac6f6b..ff0ffe5715 100644 --- a/md/CL/68/CL_0002268.md +++ b/md/CL/68/CL_0002268.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002368.md b/md/CL/68/CL_0002368.md index 4dfaa54090..2e0fb1a537 100644 --- a/md/CL/68/CL_0002368.md +++ b/md/CL/68/CL_0002368.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002468.md b/md/CL/68/CL_0002468.md index 8002ba4961..97e3772135 100644 --- a/md/CL/68/CL_0002468.md +++ b/md/CL/68/CL_0002468.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002568.md b/md/CL/68/CL_0002568.md index d104324be5..9c7d483263 100644 --- a/md/CL/68/CL_0002568.md +++ b/md/CL/68/CL_0002568.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_0002668.md b/md/CL/68/CL_0002668.md index 7371ae8653..3c95c18823 100644 --- a/md/CL/68/CL_0002668.md +++ b/md/CL/68/CL_0002668.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_1000368.md b/md/CL/68/CL_1000368.md index 572eaef98d..df7dc1a7bd 100644 --- a/md/CL/68/CL_1000368.md +++ b/md/CL/68/CL_1000368.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_1000468.md b/md/CL/68/CL_1000468.md index 38e298d99d..cebd6bf877 100644 --- a/md/CL/68/CL_1000468.md +++ b/md/CL/68/CL_1000468.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_1000768.md b/md/CL/68/CL_1000768.md index f2963291fe..3f817e19fc 100644 --- a/md/CL/68/CL_1000768.md +++ b/md/CL/68/CL_1000768.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_1001068.md b/md/CL/68/CL_1001068.md index 717876d765..6b49d53600 100644 --- a/md/CL/68/CL_1001068.md +++ b/md/CL/68/CL_1001068.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/68/CL_1001568.md b/md/CL/68/CL_1001568.md index 3a9fa2fa60..5b2483f4dd 100644 --- a/md/CL/68/CL_1001568.md +++ b/md/CL/68/CL_1001568.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000069.md b/md/CL/69/CL_0000069.md index 560dc9cf9b..52d9786f08 100644 --- a/md/CL/69/CL_0000069.md +++ b/md/CL/69/CL_0000069.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000169.md b/md/CL/69/CL_0000169.md index 6fbf04e6de..5959456f4f 100644 --- a/md/CL/69/CL_0000169.md +++ b/md/CL/69/CL_0000169.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000269.md b/md/CL/69/CL_0000269.md index c9e5ef01b8..66d1474c85 100644 --- a/md/CL/69/CL_0000269.md +++ b/md/CL/69/CL_0000269.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000469.md b/md/CL/69/CL_0000469.md index 6dba09c782..6566618ae7 100644 --- a/md/CL/69/CL_0000469.md +++ b/md/CL/69/CL_0000469.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000569.md b/md/CL/69/CL_0000569.md index 1e53af84c1..25bd405b42 100644 --- a/md/CL/69/CL_0000569.md +++ b/md/CL/69/CL_0000569.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000669.md b/md/CL/69/CL_0000669.md index d55462a0ea..0be0783ce8 100644 --- a/md/CL/69/CL_0000669.md +++ b/md/CL/69/CL_0000669.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000769.md b/md/CL/69/CL_0000769.md index 3e9241cb85..8211f9bf44 100644 --- a/md/CL/69/CL_0000769.md +++ b/md/CL/69/CL_0000769.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000869.md b/md/CL/69/CL_0000869.md index 7f7ee6b429..bf6ad1f889 100644 --- a/md/CL/69/CL_0000869.md +++ b/md/CL/69/CL_0000869.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0000969.md b/md/CL/69/CL_0000969.md index 0d104ad482..e543c468ce 100644 --- a/md/CL/69/CL_0000969.md +++ b/md/CL/69/CL_0000969.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002069.md b/md/CL/69/CL_0002069.md index f4f89273aa..2e3ba651e9 100644 --- a/md/CL/69/CL_0002069.md +++ b/md/CL/69/CL_0002069.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002169.md b/md/CL/69/CL_0002169.md index e02d81b730..a12eab6ec5 100644 --- a/md/CL/69/CL_0002169.md +++ b/md/CL/69/CL_0002169.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002269.md b/md/CL/69/CL_0002269.md index cb998ffe92..e1961a0d1c 100644 --- a/md/CL/69/CL_0002269.md +++ b/md/CL/69/CL_0002269.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002369.md b/md/CL/69/CL_0002369.md index fb980fd0b7..26164b02a2 100644 --- a/md/CL/69/CL_0002369.md +++ b/md/CL/69/CL_0002369.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002469.md b/md/CL/69/CL_0002469.md index f5405e02d7..44bf2f7d3d 100644 --- a/md/CL/69/CL_0002469.md +++ b/md/CL/69/CL_0002469.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002569.md b/md/CL/69/CL_0002569.md index 5b54fe82f5..6e68d40178 100644 --- a/md/CL/69/CL_0002569.md +++ b/md/CL/69/CL_0002569.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_0002669.md b/md/CL/69/CL_0002669.md index edf9c3885a..7fc309d6f1 100644 --- a/md/CL/69/CL_0002669.md +++ b/md/CL/69/CL_0002669.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_1000369.md b/md/CL/69/CL_1000369.md index 957eff2923..88a3c97b3e 100644 --- a/md/CL/69/CL_1000369.md +++ b/md/CL/69/CL_1000369.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_1000469.md b/md/CL/69/CL_1000469.md index 4a3dda0768..d14ef1e1ed 100644 --- a/md/CL/69/CL_1000469.md +++ b/md/CL/69/CL_1000469.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/69/CL_1001569.md b/md/CL/69/CL_1001569.md index 6c88b8b536..fe0dc1b5be 100644 --- a/md/CL/69/CL_1001569.md +++ b/md/CL/69/CL_1001569.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000170.md b/md/CL/70/CL_0000170.md index 55df8c013d..596cd65851 100644 --- a/md/CL/70/CL_0000170.md +++ b/md/CL/70/CL_0000170.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000470.md b/md/CL/70/CL_0000470.md index 1470ec092d..01a33ed793 100644 --- a/md/CL/70/CL_0000470.md +++ b/md/CL/70/CL_0000470.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000570.md b/md/CL/70/CL_0000570.md index 6d6f17e8f6..b9799f769a 100644 --- a/md/CL/70/CL_0000570.md +++ b/md/CL/70/CL_0000570.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000670.md b/md/CL/70/CL_0000670.md index 08c79270c9..bdeef82c48 100644 --- a/md/CL/70/CL_0000670.md +++ b/md/CL/70/CL_0000670.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000770.md b/md/CL/70/CL_0000770.md index d4958cd942..27be31bcbe 100644 --- a/md/CL/70/CL_0000770.md +++ b/md/CL/70/CL_0000770.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000870.md b/md/CL/70/CL_0000870.md index 94528876fa..a08d98585d 100644 --- a/md/CL/70/CL_0000870.md +++ b/md/CL/70/CL_0000870.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0000970.md b/md/CL/70/CL_0000970.md index ff17ca66da..d05673b1aa 100644 --- a/md/CL/70/CL_0000970.md +++ b/md/CL/70/CL_0000970.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002070.md b/md/CL/70/CL_0002070.md index 5b23db6b8f..af0f1c92ed 100644 --- a/md/CL/70/CL_0002070.md +++ b/md/CL/70/CL_0002070.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002170.md b/md/CL/70/CL_0002170.md index c9291d39f4..cf458d4201 100644 --- a/md/CL/70/CL_0002170.md +++ b/md/CL/70/CL_0002170.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002270.md b/md/CL/70/CL_0002270.md index ac9ce93633..d353dd6051 100644 --- a/md/CL/70/CL_0002270.md +++ b/md/CL/70/CL_0002270.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002370.md b/md/CL/70/CL_0002370.md index fdc21efff9..e92e829e12 100644 --- a/md/CL/70/CL_0002370.md +++ b/md/CL/70/CL_0002370.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002470.md b/md/CL/70/CL_0002470.md index fc7f18f21c..2df89f3cce 100644 --- a/md/CL/70/CL_0002470.md +++ b/md/CL/70/CL_0002470.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002570.md b/md/CL/70/CL_0002570.md index a60dbe938c..ed5de856fb 100644 --- a/md/CL/70/CL_0002570.md +++ b/md/CL/70/CL_0002570.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_0002670.md b/md/CL/70/CL_0002670.md index aa3b1da9cb..b718538888 100644 --- a/md/CL/70/CL_0002670.md +++ b/md/CL/70/CL_0002670.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_1000370.md b/md/CL/70/CL_1000370.md index 66d3e95a96..1976d02330 100644 --- a/md/CL/70/CL_1000370.md +++ b/md/CL/70/CL_1000370.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/70/CL_1000470.md b/md/CL/70/CL_1000470.md index 6f623f4585..2587be2774 100644 --- a/md/CL/70/CL_1000470.md +++ b/md/CL/70/CL_1000470.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000071.md b/md/CL/71/CL_0000071.md index b0d01b872e..7fc3b4a618 100644 --- a/md/CL/71/CL_0000071.md +++ b/md/CL/71/CL_0000071.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000171.md b/md/CL/71/CL_0000171.md index 01e590f10e..008640b527 100644 --- a/md/CL/71/CL_0000171.md +++ b/md/CL/71/CL_0000171.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000271.md b/md/CL/71/CL_0000271.md index f7930abcfb..0654e055d9 100644 --- a/md/CL/71/CL_0000271.md +++ b/md/CL/71/CL_0000271.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000371.md b/md/CL/71/CL_0000371.md index 761d96d3c1..dcdafc0690 100644 --- a/md/CL/71/CL_0000371.md +++ b/md/CL/71/CL_0000371.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000571.md b/md/CL/71/CL_0000571.md index c2a08d59b4..475cbed7c7 100644 --- a/md/CL/71/CL_0000571.md +++ b/md/CL/71/CL_0000571.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000671.md b/md/CL/71/CL_0000671.md index 7fc9b564e8..c7c355f613 100644 --- a/md/CL/71/CL_0000671.md +++ b/md/CL/71/CL_0000671.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000771.md b/md/CL/71/CL_0000771.md index 50dfd337e8..532240c410 100644 --- a/md/CL/71/CL_0000771.md +++ b/md/CL/71/CL_0000771.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000871.md b/md/CL/71/CL_0000871.md index a424c87da5..f07c7b8d5d 100644 --- a/md/CL/71/CL_0000871.md +++ b/md/CL/71/CL_0000871.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0000971.md b/md/CL/71/CL_0000971.md index 0568f8eb4e..7b36a160f4 100644 --- a/md/CL/71/CL_0000971.md +++ b/md/CL/71/CL_0000971.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002071.md b/md/CL/71/CL_0002071.md index 7fcd5a6dcc..0e4d10b38f 100644 --- a/md/CL/71/CL_0002071.md +++ b/md/CL/71/CL_0002071.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002171.md b/md/CL/71/CL_0002171.md index 05a611542f..807bdaed3d 100644 --- a/md/CL/71/CL_0002171.md +++ b/md/CL/71/CL_0002171.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002271.md b/md/CL/71/CL_0002271.md index b045092383..47a8fe4bfb 100644 --- a/md/CL/71/CL_0002271.md +++ b/md/CL/71/CL_0002271.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002371.md b/md/CL/71/CL_0002371.md index 8c4399f60d..52c2d2ae3f 100644 --- a/md/CL/71/CL_0002371.md +++ b/md/CL/71/CL_0002371.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002471.md b/md/CL/71/CL_0002471.md index 7613d8d04f..28f0ac9935 100644 --- a/md/CL/71/CL_0002471.md +++ b/md/CL/71/CL_0002471.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002571.md b/md/CL/71/CL_0002571.md index 23f9253e98..ab3f2e8a24 100644 --- a/md/CL/71/CL_0002571.md +++ b/md/CL/71/CL_0002571.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_0002671.md b/md/CL/71/CL_0002671.md index c7828081f4..c8770906c6 100644 --- a/md/CL/71/CL_0002671.md +++ b/md/CL/71/CL_0002671.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_1000371.md b/md/CL/71/CL_1000371.md index 6815a2e3f6..ccf6eb285f 100644 --- a/md/CL/71/CL_1000371.md +++ b/md/CL/71/CL_1000371.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_1000471.md b/md/CL/71/CL_1000471.md index 1978f8ecca..10a8898ce9 100644 --- a/md/CL/71/CL_1000471.md +++ b/md/CL/71/CL_1000471.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/71/CL_1001571.md b/md/CL/71/CL_1001571.md index b6a8e2afaa..41f25c09ae 100644 --- a/md/CL/71/CL_1001571.md +++ b/md/CL/71/CL_1001571.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000072.md b/md/CL/72/CL_0000072.md index 1967ffd623..0b41700888 100644 --- a/md/CL/72/CL_0000072.md +++ b/md/CL/72/CL_0000072.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000172.md b/md/CL/72/CL_0000172.md index 6f5c8b3f89..dedc005c36 100644 --- a/md/CL/72/CL_0000172.md +++ b/md/CL/72/CL_0000172.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000372.md b/md/CL/72/CL_0000372.md index 121051b15d..b309b2810b 100644 --- a/md/CL/72/CL_0000372.md +++ b/md/CL/72/CL_0000372.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000772.md b/md/CL/72/CL_0000772.md index 60f68d386a..d631b024cc 100644 --- a/md/CL/72/CL_0000772.md +++ b/md/CL/72/CL_0000772.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000872.md b/md/CL/72/CL_0000872.md index ec8d8c1d7c..4a77f65a9e 100644 --- a/md/CL/72/CL_0000872.md +++ b/md/CL/72/CL_0000872.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0000972.md b/md/CL/72/CL_0000972.md index 30423d4e53..c92691e96b 100644 --- a/md/CL/72/CL_0000972.md +++ b/md/CL/72/CL_0000972.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002072.md b/md/CL/72/CL_0002072.md index 2fb5b6636d..cd9cf39c0e 100644 --- a/md/CL/72/CL_0002072.md +++ b/md/CL/72/CL_0002072.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002172.md b/md/CL/72/CL_0002172.md index c5dc859037..59594bc5c7 100644 --- a/md/CL/72/CL_0002172.md +++ b/md/CL/72/CL_0002172.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002272.md b/md/CL/72/CL_0002272.md index 44af4be576..bb216b3dd3 100644 --- a/md/CL/72/CL_0002272.md +++ b/md/CL/72/CL_0002272.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002372.md b/md/CL/72/CL_0002372.md index 84c515caad..535aac4554 100644 --- a/md/CL/72/CL_0002372.md +++ b/md/CL/72/CL_0002372.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002472.md b/md/CL/72/CL_0002472.md index 79c8509857..6b9f5f4574 100644 --- a/md/CL/72/CL_0002472.md +++ b/md/CL/72/CL_0002472.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002572.md b/md/CL/72/CL_0002572.md index 7956b46f10..c5dbd2b440 100644 --- a/md/CL/72/CL_0002572.md +++ b/md/CL/72/CL_0002572.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_0002672.md b/md/CL/72/CL_0002672.md index a134e6d7dc..0211ad3ae5 100644 --- a/md/CL/72/CL_0002672.md +++ b/md/CL/72/CL_0002672.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_1000372.md b/md/CL/72/CL_1000372.md index 3d2b785fe0..abe2b9ec08 100644 --- a/md/CL/72/CL_1000372.md +++ b/md/CL/72/CL_1000372.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_1000472.md b/md/CL/72/CL_1000472.md index 7d36b59f07..365ab05b1f 100644 --- a/md/CL/72/CL_1000472.md +++ b/md/CL/72/CL_1000472.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/72/CL_1001572.md b/md/CL/72/CL_1001572.md index f8f6781d60..75f38e5fad 100644 --- a/md/CL/72/CL_1001572.md +++ b/md/CL/72/CL_1001572.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000073.md b/md/CL/73/CL_0000073.md index 304656e884..d1e3a20dd7 100644 --- a/md/CL/73/CL_0000073.md +++ b/md/CL/73/CL_0000073.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000173.md b/md/CL/73/CL_0000173.md index c1c3d72e8c..e88ac0db43 100644 --- a/md/CL/73/CL_0000173.md +++ b/md/CL/73/CL_0000173.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000273.md b/md/CL/73/CL_0000273.md index 31c9931a56..93ad10fc1b 100644 --- a/md/CL/73/CL_0000273.md +++ b/md/CL/73/CL_0000273.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000373.md b/md/CL/73/CL_0000373.md index a209ed8930..632bf1b0a2 100644 --- a/md/CL/73/CL_0000373.md +++ b/md/CL/73/CL_0000373.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000473.md b/md/CL/73/CL_0000473.md index 4cdeceaae9..a23de6564e 100644 --- a/md/CL/73/CL_0000473.md +++ b/md/CL/73/CL_0000473.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000573.md b/md/CL/73/CL_0000573.md index af1afe5e9b..2174ae28db 100644 --- a/md/CL/73/CL_0000573.md +++ b/md/CL/73/CL_0000573.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000673.md b/md/CL/73/CL_0000673.md index d50e48c440..003acde4ea 100644 --- a/md/CL/73/CL_0000673.md +++ b/md/CL/73/CL_0000673.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000773.md b/md/CL/73/CL_0000773.md index 1c71c75ea6..f346abd6ec 100644 --- a/md/CL/73/CL_0000773.md +++ b/md/CL/73/CL_0000773.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000873.md b/md/CL/73/CL_0000873.md index b6d61c8090..027cfcbafa 100644 --- a/md/CL/73/CL_0000873.md +++ b/md/CL/73/CL_0000873.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0000973.md b/md/CL/73/CL_0000973.md index 70e8a453ac..1b0974ab98 100644 --- a/md/CL/73/CL_0000973.md +++ b/md/CL/73/CL_0000973.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002073.md b/md/CL/73/CL_0002073.md index 45cd664dec..0bdcf7b8ce 100644 --- a/md/CL/73/CL_0002073.md +++ b/md/CL/73/CL_0002073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002173.md b/md/CL/73/CL_0002173.md index ec146cb5b2..4f3f63b6bd 100644 --- a/md/CL/73/CL_0002173.md +++ b/md/CL/73/CL_0002173.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002273.md b/md/CL/73/CL_0002273.md index fc5748a267..2b15d32405 100644 --- a/md/CL/73/CL_0002273.md +++ b/md/CL/73/CL_0002273.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002373.md b/md/CL/73/CL_0002373.md index ecebecb6e6..c710ad4d4d 100644 --- a/md/CL/73/CL_0002373.md +++ b/md/CL/73/CL_0002373.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002473.md b/md/CL/73/CL_0002473.md index 8a968933e9..29f0f6f4d2 100644 --- a/md/CL/73/CL_0002473.md +++ b/md/CL/73/CL_0002473.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002573.md b/md/CL/73/CL_0002573.md index 5a12cc4175..90e5d18250 100644 --- a/md/CL/73/CL_0002573.md +++ b/md/CL/73/CL_0002573.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_0002673.md b/md/CL/73/CL_0002673.md index 651d3eb8ce..f39330b33e 100644 --- a/md/CL/73/CL_0002673.md +++ b/md/CL/73/CL_0002673.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_1000373.md b/md/CL/73/CL_1000373.md index c80855eb90..6897647ff8 100644 --- a/md/CL/73/CL_1000373.md +++ b/md/CL/73/CL_1000373.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_1000473.md b/md/CL/73/CL_1000473.md index 31a704cef0..181d852034 100644 --- a/md/CL/73/CL_1000473.md +++ b/md/CL/73/CL_1000473.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/73/CL_1001573.md b/md/CL/73/CL_1001573.md index 4583f5bc8b..3759d35140 100644 --- a/md/CL/73/CL_1001573.md +++ b/md/CL/73/CL_1001573.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000174.md b/md/CL/74/CL_0000174.md index d18edc2ddd..cebced3be3 100644 --- a/md/CL/74/CL_0000174.md +++ b/md/CL/74/CL_0000174.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000374.md b/md/CL/74/CL_0000374.md index 88b37ff2dc..852cc5a164 100644 --- a/md/CL/74/CL_0000374.md +++ b/md/CL/74/CL_0000374.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000474.md b/md/CL/74/CL_0000474.md index 996427fd6f..9890a09af2 100644 --- a/md/CL/74/CL_0000474.md +++ b/md/CL/74/CL_0000474.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000574.md b/md/CL/74/CL_0000574.md index 97df36220a..0d8507a669 100644 --- a/md/CL/74/CL_0000574.md +++ b/md/CL/74/CL_0000574.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000674.md b/md/CL/74/CL_0000674.md index 722360c235..752d2e1098 100644 --- a/md/CL/74/CL_0000674.md +++ b/md/CL/74/CL_0000674.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000774.md b/md/CL/74/CL_0000774.md index ae438d2f9e..61bfe550d7 100644 --- a/md/CL/74/CL_0000774.md +++ b/md/CL/74/CL_0000774.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000874.md b/md/CL/74/CL_0000874.md index d210e2d95f..e93fdb1415 100644 --- a/md/CL/74/CL_0000874.md +++ b/md/CL/74/CL_0000874.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0000974.md b/md/CL/74/CL_0000974.md index b0e69e1b2e..964b736855 100644 --- a/md/CL/74/CL_0000974.md +++ b/md/CL/74/CL_0000974.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002074.md b/md/CL/74/CL_0002074.md index fc94ec6668..5de2ce7e19 100644 --- a/md/CL/74/CL_0002074.md +++ b/md/CL/74/CL_0002074.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002174.md b/md/CL/74/CL_0002174.md index cfd5a613f1..e41fdb41b8 100644 --- a/md/CL/74/CL_0002174.md +++ b/md/CL/74/CL_0002174.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002274.md b/md/CL/74/CL_0002274.md index 71d957b1af..9840feb1b4 100644 --- a/md/CL/74/CL_0002274.md +++ b/md/CL/74/CL_0002274.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002374.md b/md/CL/74/CL_0002374.md index 51f49cddab..36e40550b7 100644 --- a/md/CL/74/CL_0002374.md +++ b/md/CL/74/CL_0002374.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002474.md b/md/CL/74/CL_0002474.md index 9aa3a77fdc..ed83804755 100644 --- a/md/CL/74/CL_0002474.md +++ b/md/CL/74/CL_0002474.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002574.md b/md/CL/74/CL_0002574.md index 20e234e854..72735be639 100644 --- a/md/CL/74/CL_0002574.md +++ b/md/CL/74/CL_0002574.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_0002674.md b/md/CL/74/CL_0002674.md index 054eb8b5d0..8a6a925c54 100644 --- a/md/CL/74/CL_0002674.md +++ b/md/CL/74/CL_0002674.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_1000274.md b/md/CL/74/CL_1000274.md index 5187bd7b8c..1b73abbabf 100644 --- a/md/CL/74/CL_1000274.md +++ b/md/CL/74/CL_1000274.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_1000374.md b/md/CL/74/CL_1000374.md index f8eeafe6bf..10233f9dbb 100644 --- a/md/CL/74/CL_1000374.md +++ b/md/CL/74/CL_1000374.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/74/CL_1001474.md b/md/CL/74/CL_1001474.md index 1c76219e75..ed2e5dbe28 100644 --- a/md/CL/74/CL_1001474.md +++ b/md/CL/74/CL_1001474.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000075.md b/md/CL/75/CL_0000075.md index 917af55358..4d61abe75e 100644 --- a/md/CL/75/CL_0000075.md +++ b/md/CL/75/CL_0000075.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000175.md b/md/CL/75/CL_0000175.md index 0c13f03387..cc33464505 100644 --- a/md/CL/75/CL_0000175.md +++ b/md/CL/75/CL_0000175.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000275.md b/md/CL/75/CL_0000275.md index d853441976..18a064251e 100644 --- a/md/CL/75/CL_0000275.md +++ b/md/CL/75/CL_0000275.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000575.md b/md/CL/75/CL_0000575.md index 6991b38af4..f6ae091bf2 100644 --- a/md/CL/75/CL_0000575.md +++ b/md/CL/75/CL_0000575.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000675.md b/md/CL/75/CL_0000675.md index b896364c3e..96087a54e5 100644 --- a/md/CL/75/CL_0000675.md +++ b/md/CL/75/CL_0000675.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000775.md b/md/CL/75/CL_0000775.md index 130e607874..da412fc2a1 100644 --- a/md/CL/75/CL_0000775.md +++ b/md/CL/75/CL_0000775.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000875.md b/md/CL/75/CL_0000875.md index 2371f478f2..503c36c56a 100644 --- a/md/CL/75/CL_0000875.md +++ b/md/CL/75/CL_0000875.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0000975.md b/md/CL/75/CL_0000975.md index ee2d32b877..a08a2df406 100644 --- a/md/CL/75/CL_0000975.md +++ b/md/CL/75/CL_0000975.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002075.md b/md/CL/75/CL_0002075.md index f7e2de0756..08c5380d71 100644 --- a/md/CL/75/CL_0002075.md +++ b/md/CL/75/CL_0002075.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002175.md b/md/CL/75/CL_0002175.md index cc28083b5d..171ec876ac 100644 --- a/md/CL/75/CL_0002175.md +++ b/md/CL/75/CL_0002175.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002275.md b/md/CL/75/CL_0002275.md index 71f70d56e3..c4902a841d 100644 --- a/md/CL/75/CL_0002275.md +++ b/md/CL/75/CL_0002275.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002375.md b/md/CL/75/CL_0002375.md index a8743eb940..4ba7c4e1b2 100644 --- a/md/CL/75/CL_0002375.md +++ b/md/CL/75/CL_0002375.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002475.md b/md/CL/75/CL_0002475.md index 4ed17a8115..35d42e37e8 100644 --- a/md/CL/75/CL_0002475.md +++ b/md/CL/75/CL_0002475.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002575.md b/md/CL/75/CL_0002575.md index 6b08a51964..87ac455ac9 100644 --- a/md/CL/75/CL_0002575.md +++ b/md/CL/75/CL_0002575.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_0002675.md b/md/CL/75/CL_0002675.md index fd74191e8c..d1b0374dae 100644 --- a/md/CL/75/CL_0002675.md +++ b/md/CL/75/CL_0002675.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_1000275.md b/md/CL/75/CL_1000275.md index 8c42c396f7..68eaa2e671 100644 --- a/md/CL/75/CL_1000275.md +++ b/md/CL/75/CL_1000275.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_1000375.md b/md/CL/75/CL_1000375.md index 23f6d1cdf5..e6dac5336b 100644 --- a/md/CL/75/CL_1000375.md +++ b/md/CL/75/CL_1000375.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/75/CL_1001575.md b/md/CL/75/CL_1001575.md index 6094335b47..2bdea7c45f 100644 --- a/md/CL/75/CL_1001575.md +++ b/md/CL/75/CL_1001575.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000076.md b/md/CL/76/CL_0000076.md index 4de89a867e..2d9a88c5c8 100644 --- a/md/CL/76/CL_0000076.md +++ b/md/CL/76/CL_0000076.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000176.md b/md/CL/76/CL_0000176.md index fc61cb092f..7416ba9b6b 100644 --- a/md/CL/76/CL_0000176.md +++ b/md/CL/76/CL_0000176.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000376.md b/md/CL/76/CL_0000376.md index e9096c64a6..8982e2818f 100644 --- a/md/CL/76/CL_0000376.md +++ b/md/CL/76/CL_0000376.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000476.md b/md/CL/76/CL_0000476.md index 33e1d28ffd..53dac7d7a3 100644 --- a/md/CL/76/CL_0000476.md +++ b/md/CL/76/CL_0000476.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000576.md b/md/CL/76/CL_0000576.md index eaa454ccd2..5a95dfcf12 100644 --- a/md/CL/76/CL_0000576.md +++ b/md/CL/76/CL_0000576.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000676.md b/md/CL/76/CL_0000676.md index d979c6f840..cc2beb7803 100644 --- a/md/CL/76/CL_0000676.md +++ b/md/CL/76/CL_0000676.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000776.md b/md/CL/76/CL_0000776.md index 5a65251ed4..5d9f767dca 100644 --- a/md/CL/76/CL_0000776.md +++ b/md/CL/76/CL_0000776.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000876.md b/md/CL/76/CL_0000876.md index 16a147b5b3..667774380d 100644 --- a/md/CL/76/CL_0000876.md +++ b/md/CL/76/CL_0000876.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0000976.md b/md/CL/76/CL_0000976.md index 55cb9616c1..b9ce9b14e3 100644 --- a/md/CL/76/CL_0000976.md +++ b/md/CL/76/CL_0000976.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002076.md b/md/CL/76/CL_0002076.md index e9a9adc93d..2708305aad 100644 --- a/md/CL/76/CL_0002076.md +++ b/md/CL/76/CL_0002076.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002176.md b/md/CL/76/CL_0002176.md index acfe4ecd5f..1a894490c6 100644 --- a/md/CL/76/CL_0002176.md +++ b/md/CL/76/CL_0002176.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002376.md b/md/CL/76/CL_0002376.md index cf122fd83b..e0047768de 100644 --- a/md/CL/76/CL_0002376.md +++ b/md/CL/76/CL_0002376.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002476.md b/md/CL/76/CL_0002476.md index 897e2a0f15..acfbb89e64 100644 --- a/md/CL/76/CL_0002476.md +++ b/md/CL/76/CL_0002476.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002576.md b/md/CL/76/CL_0002576.md index d8188e5676..07c054a4a6 100644 --- a/md/CL/76/CL_0002576.md +++ b/md/CL/76/CL_0002576.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_0002676.md b/md/CL/76/CL_0002676.md index 0408f04ec1..564cafc74b 100644 --- a/md/CL/76/CL_0002676.md +++ b/md/CL/76/CL_0002676.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_1000276.md b/md/CL/76/CL_1000276.md index 2e9d95b395..7d435e5f70 100644 --- a/md/CL/76/CL_1000276.md +++ b/md/CL/76/CL_1000276.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_1000376.md b/md/CL/76/CL_1000376.md index 5a45c2a2c0..f9cbd63e0b 100644 --- a/md/CL/76/CL_1000376.md +++ b/md/CL/76/CL_1000376.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/76/CL_1001576.md b/md/CL/76/CL_1001576.md index f93a8ffebe..9a74b5b30b 100644 --- a/md/CL/76/CL_1001576.md +++ b/md/CL/76/CL_1001576.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000077.md b/md/CL/77/CL_0000077.md index e375100a90..4ba5ab86d3 100644 --- a/md/CL/77/CL_0000077.md +++ b/md/CL/77/CL_0000077.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000177.md b/md/CL/77/CL_0000177.md index 741e339cad..6be8a02869 100644 --- a/md/CL/77/CL_0000177.md +++ b/md/CL/77/CL_0000177.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000377.md b/md/CL/77/CL_0000377.md index dc5d80fddb..55c1ff21d9 100644 --- a/md/CL/77/CL_0000377.md +++ b/md/CL/77/CL_0000377.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000477.md b/md/CL/77/CL_0000477.md index 01ce42fca7..80aff1d4c3 100644 --- a/md/CL/77/CL_0000477.md +++ b/md/CL/77/CL_0000477.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000577.md b/md/CL/77/CL_0000577.md index e917d0b4a3..148facf585 100644 --- a/md/CL/77/CL_0000577.md +++ b/md/CL/77/CL_0000577.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000677.md b/md/CL/77/CL_0000677.md index dcfe19e214..665fe40294 100644 --- a/md/CL/77/CL_0000677.md +++ b/md/CL/77/CL_0000677.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000777.md b/md/CL/77/CL_0000777.md index c613f405f2..f443e61f11 100644 --- a/md/CL/77/CL_0000777.md +++ b/md/CL/77/CL_0000777.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000877.md b/md/CL/77/CL_0000877.md index 3fed750009..7948e6291c 100644 --- a/md/CL/77/CL_0000877.md +++ b/md/CL/77/CL_0000877.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0000977.md b/md/CL/77/CL_0000977.md index e24dc87d05..4355f42c69 100644 --- a/md/CL/77/CL_0000977.md +++ b/md/CL/77/CL_0000977.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002077.md b/md/CL/77/CL_0002077.md index a68c47472a..6a63ad7a35 100644 --- a/md/CL/77/CL_0002077.md +++ b/md/CL/77/CL_0002077.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002177.md b/md/CL/77/CL_0002177.md index 1d9b8bdbf9..85fd6638a2 100644 --- a/md/CL/77/CL_0002177.md +++ b/md/CL/77/CL_0002177.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002277.md b/md/CL/77/CL_0002277.md index 8fd2fe32e7..eeac1aafa4 100644 --- a/md/CL/77/CL_0002277.md +++ b/md/CL/77/CL_0002277.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002377.md b/md/CL/77/CL_0002377.md index 55a6fca701..9e31b344a3 100644 --- a/md/CL/77/CL_0002377.md +++ b/md/CL/77/CL_0002377.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002477.md b/md/CL/77/CL_0002477.md index 19946e1021..61b0cb4ac4 100644 --- a/md/CL/77/CL_0002477.md +++ b/md/CL/77/CL_0002477.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002577.md b/md/CL/77/CL_0002577.md index 0c2721fbac..32f703a7e6 100644 --- a/md/CL/77/CL_0002577.md +++ b/md/CL/77/CL_0002577.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_0002677.md b/md/CL/77/CL_0002677.md index 9145a38f24..6e61a24a31 100644 --- a/md/CL/77/CL_0002677.md +++ b/md/CL/77/CL_0002677.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_1000277.md b/md/CL/77/CL_1000277.md index bd452f1460..fc6efa3952 100644 --- a/md/CL/77/CL_1000277.md +++ b/md/CL/77/CL_1000277.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_1000377.md b/md/CL/77/CL_1000377.md index b0407d60e9..2856173780 100644 --- a/md/CL/77/CL_1000377.md +++ b/md/CL/77/CL_1000377.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_1000477.md b/md/CL/77/CL_1000477.md index 4569f896f1..ec74541a09 100644 --- a/md/CL/77/CL_1000477.md +++ b/md/CL/77/CL_1000477.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/77/CL_1001577.md b/md/CL/77/CL_1001577.md index c681e40394..1dcc612af6 100644 --- a/md/CL/77/CL_1001577.md +++ b/md/CL/77/CL_1001577.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000078.md b/md/CL/78/CL_0000078.md index d15989dd05..b6397ec85b 100644 --- a/md/CL/78/CL_0000078.md +++ b/md/CL/78/CL_0000078.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000178.md b/md/CL/78/CL_0000178.md index fc163161f0..fb38f92d0b 100644 --- a/md/CL/78/CL_0000178.md +++ b/md/CL/78/CL_0000178.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000378.md b/md/CL/78/CL_0000378.md index cc73a8917d..6eb90849ea 100644 --- a/md/CL/78/CL_0000378.md +++ b/md/CL/78/CL_0000378.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000478.md b/md/CL/78/CL_0000478.md index b9bcecb0c7..271e4488c0 100644 --- a/md/CL/78/CL_0000478.md +++ b/md/CL/78/CL_0000478.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000578.md b/md/CL/78/CL_0000578.md index 888dc5e644..f239e03256 100644 --- a/md/CL/78/CL_0000578.md +++ b/md/CL/78/CL_0000578.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000678.md b/md/CL/78/CL_0000678.md index 6cbd4184c3..831f8d754f 100644 --- a/md/CL/78/CL_0000678.md +++ b/md/CL/78/CL_0000678.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000778.md b/md/CL/78/CL_0000778.md index f5dbd600c3..22811f3734 100644 --- a/md/CL/78/CL_0000778.md +++ b/md/CL/78/CL_0000778.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000878.md b/md/CL/78/CL_0000878.md index 4daa3c4077..ab6973d48a 100644 --- a/md/CL/78/CL_0000878.md +++ b/md/CL/78/CL_0000878.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0000978.md b/md/CL/78/CL_0000978.md index 43fdd39421..690ee88612 100644 --- a/md/CL/78/CL_0000978.md +++ b/md/CL/78/CL_0000978.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002078.md b/md/CL/78/CL_0002078.md index 891658453f..79cf03deb2 100644 --- a/md/CL/78/CL_0002078.md +++ b/md/CL/78/CL_0002078.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002178.md b/md/CL/78/CL_0002178.md index f3e1a42aba..eff1767936 100644 --- a/md/CL/78/CL_0002178.md +++ b/md/CL/78/CL_0002178.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002278.md b/md/CL/78/CL_0002278.md index 90c35906d5..67d398b5e8 100644 --- a/md/CL/78/CL_0002278.md +++ b/md/CL/78/CL_0002278.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002378.md b/md/CL/78/CL_0002378.md index f730649a26..160f916a2d 100644 --- a/md/CL/78/CL_0002378.md +++ b/md/CL/78/CL_0002378.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002478.md b/md/CL/78/CL_0002478.md index 5afd29b267..7cb3e72cfd 100644 --- a/md/CL/78/CL_0002478.md +++ b/md/CL/78/CL_0002478.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002578.md b/md/CL/78/CL_0002578.md index fa2f2867f8..bd5e8887c3 100644 --- a/md/CL/78/CL_0002578.md +++ b/md/CL/78/CL_0002578.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_0002678.md b/md/CL/78/CL_0002678.md index 7a5046cb01..da8965705f 100644 --- a/md/CL/78/CL_0002678.md +++ b/md/CL/78/CL_0002678.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_1000278.md b/md/CL/78/CL_1000278.md index 663fd09e88..bbbc29e3a8 100644 --- a/md/CL/78/CL_1000278.md +++ b/md/CL/78/CL_1000278.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_1000378.md b/md/CL/78/CL_1000378.md index 4154a95a61..738bf028f5 100644 --- a/md/CL/78/CL_1000378.md +++ b/md/CL/78/CL_1000378.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_1000478.md b/md/CL/78/CL_1000478.md index 6f7b3fcd84..e73d13c890 100644 --- a/md/CL/78/CL_1000478.md +++ b/md/CL/78/CL_1000478.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/78/CL_1001578.md b/md/CL/78/CL_1001578.md index 60ab09e34b..0e177cb2f4 100644 --- a/md/CL/78/CL_1001578.md +++ b/md/CL/78/CL_1001578.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000079.md b/md/CL/79/CL_0000079.md index 5966dc7b1e..4954ca6f5e 100644 --- a/md/CL/79/CL_0000079.md +++ b/md/CL/79/CL_0000079.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000179.md b/md/CL/79/CL_0000179.md index 3b4a731a48..b48d894b87 100644 --- a/md/CL/79/CL_0000179.md +++ b/md/CL/79/CL_0000179.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000279.md b/md/CL/79/CL_0000279.md index fa65ae07f0..d572788c30 100644 --- a/md/CL/79/CL_0000279.md +++ b/md/CL/79/CL_0000279.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000379.md b/md/CL/79/CL_0000379.md index b4cd7d8e35..51b3235165 100644 --- a/md/CL/79/CL_0000379.md +++ b/md/CL/79/CL_0000379.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000479.md b/md/CL/79/CL_0000479.md index 1125461d14..035bd5de8c 100644 --- a/md/CL/79/CL_0000479.md +++ b/md/CL/79/CL_0000479.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000579.md b/md/CL/79/CL_0000579.md index 5ece419e0a..c33bce5a9b 100644 --- a/md/CL/79/CL_0000579.md +++ b/md/CL/79/CL_0000579.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000679.md b/md/CL/79/CL_0000679.md index 5e089b8c6f..9f04157a18 100644 --- a/md/CL/79/CL_0000679.md +++ b/md/CL/79/CL_0000679.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000779.md b/md/CL/79/CL_0000779.md index 9ac1ec9330..f571f82f5a 100644 --- a/md/CL/79/CL_0000779.md +++ b/md/CL/79/CL_0000779.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000879.md b/md/CL/79/CL_0000879.md index 7289524611..dda70c3837 100644 --- a/md/CL/79/CL_0000879.md +++ b/md/CL/79/CL_0000879.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0000979.md b/md/CL/79/CL_0000979.md index 71762e2b64..34bcb45a04 100644 --- a/md/CL/79/CL_0000979.md +++ b/md/CL/79/CL_0000979.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002079.md b/md/CL/79/CL_0002079.md index 8e4d6ad344..91adabf3d5 100644 --- a/md/CL/79/CL_0002079.md +++ b/md/CL/79/CL_0002079.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002179.md b/md/CL/79/CL_0002179.md index 7bfb693665..c5054bd7f5 100644 --- a/md/CL/79/CL_0002179.md +++ b/md/CL/79/CL_0002179.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002279.md b/md/CL/79/CL_0002279.md index ed35b86b8c..8c69e58bac 100644 --- a/md/CL/79/CL_0002279.md +++ b/md/CL/79/CL_0002279.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002379.md b/md/CL/79/CL_0002379.md index 3e1bc04817..f1c358d8ad 100644 --- a/md/CL/79/CL_0002379.md +++ b/md/CL/79/CL_0002379.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002479.md b/md/CL/79/CL_0002479.md index e13cae4057..4a8c05803e 100644 --- a/md/CL/79/CL_0002479.md +++ b/md/CL/79/CL_0002479.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002579.md b/md/CL/79/CL_0002579.md index 0be8ceb536..70f335f948 100644 --- a/md/CL/79/CL_0002579.md +++ b/md/CL/79/CL_0002579.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_0002679.md b/md/CL/79/CL_0002679.md index c257901a79..efd9b99199 100644 --- a/md/CL/79/CL_0002679.md +++ b/md/CL/79/CL_0002679.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_1000279.md b/md/CL/79/CL_1000279.md index 1c70bace45..ff39dedbc2 100644 --- a/md/CL/79/CL_1000279.md +++ b/md/CL/79/CL_1000279.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_1000379.md b/md/CL/79/CL_1000379.md index 1fda5a0992..4a9696749a 100644 --- a/md/CL/79/CL_1000379.md +++ b/md/CL/79/CL_1000379.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_1000479.md b/md/CL/79/CL_1000479.md index d9b91af8a9..a9a115859b 100644 --- a/md/CL/79/CL_1000479.md +++ b/md/CL/79/CL_1000479.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_1000979.md b/md/CL/79/CL_1000979.md index 006a9e0b63..016992f882 100644 --- a/md/CL/79/CL_1000979.md +++ b/md/CL/79/CL_1000979.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/79/CL_1001579.md b/md/CL/79/CL_1001579.md index 7b63249d3d..7502c79970 100644 --- a/md/CL/79/CL_1001579.md +++ b/md/CL/79/CL_1001579.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000080.md b/md/CL/80/CL_0000080.md index d2552a9389..daefd1452b 100644 --- a/md/CL/80/CL_0000080.md +++ b/md/CL/80/CL_0000080.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000180.md b/md/CL/80/CL_0000180.md index f8ec841d7b..eea4a12024 100644 --- a/md/CL/80/CL_0000180.md +++ b/md/CL/80/CL_0000180.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000380.md b/md/CL/80/CL_0000380.md index 3ed0fa06f1..71290cc632 100644 --- a/md/CL/80/CL_0000380.md +++ b/md/CL/80/CL_0000380.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000480.md b/md/CL/80/CL_0000480.md index b69ae3ca96..2517552501 100644 --- a/md/CL/80/CL_0000480.md +++ b/md/CL/80/CL_0000480.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000580.md b/md/CL/80/CL_0000580.md index bfc9500f9b..88a64e8c95 100644 --- a/md/CL/80/CL_0000580.md +++ b/md/CL/80/CL_0000580.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000680.md b/md/CL/80/CL_0000680.md index c53b33575e..367c9215b0 100644 --- a/md/CL/80/CL_0000680.md +++ b/md/CL/80/CL_0000680.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000780.md b/md/CL/80/CL_0000780.md index 67001abafc..914e6ec5b7 100644 --- a/md/CL/80/CL_0000780.md +++ b/md/CL/80/CL_0000780.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000880.md b/md/CL/80/CL_0000880.md index 20631da9cc..8ffe35b658 100644 --- a/md/CL/80/CL_0000880.md +++ b/md/CL/80/CL_0000880.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0000980.md b/md/CL/80/CL_0000980.md index d2ebb4812d..fb51991350 100644 --- a/md/CL/80/CL_0000980.md +++ b/md/CL/80/CL_0000980.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002080.md b/md/CL/80/CL_0002080.md index 2b8912d737..1c0623737b 100644 --- a/md/CL/80/CL_0002080.md +++ b/md/CL/80/CL_0002080.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002180.md b/md/CL/80/CL_0002180.md index f13a3b81d0..b42b2d5ffd 100644 --- a/md/CL/80/CL_0002180.md +++ b/md/CL/80/CL_0002180.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002280.md b/md/CL/80/CL_0002280.md index 6af5aa33d8..1f42601e3a 100644 --- a/md/CL/80/CL_0002280.md +++ b/md/CL/80/CL_0002280.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002380.md b/md/CL/80/CL_0002380.md index 1bba0b3f91..a637146bb0 100644 --- a/md/CL/80/CL_0002380.md +++ b/md/CL/80/CL_0002380.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002480.md b/md/CL/80/CL_0002480.md index 03991a4373..c2d69c8007 100644 --- a/md/CL/80/CL_0002480.md +++ b/md/CL/80/CL_0002480.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002580.md b/md/CL/80/CL_0002580.md index d27c31b3ba..d61decb8b0 100644 --- a/md/CL/80/CL_0002580.md +++ b/md/CL/80/CL_0002580.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_0002680.md b/md/CL/80/CL_0002680.md index fa918a1272..e162f9d712 100644 --- a/md/CL/80/CL_0002680.md +++ b/md/CL/80/CL_0002680.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_1000280.md b/md/CL/80/CL_1000280.md index 5fb7ceb20b..365794cc39 100644 --- a/md/CL/80/CL_1000280.md +++ b/md/CL/80/CL_1000280.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_1000380.md b/md/CL/80/CL_1000380.md index 2f9627e467..69bd157dc1 100644 --- a/md/CL/80/CL_1000380.md +++ b/md/CL/80/CL_1000380.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_1000480.md b/md/CL/80/CL_1000480.md index 640037d021..643b9aa783 100644 --- a/md/CL/80/CL_1000480.md +++ b/md/CL/80/CL_1000480.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/80/CL_1001580.md b/md/CL/80/CL_1001580.md index 19ceec6a19..7cf742e36b 100644 --- a/md/CL/80/CL_1001580.md +++ b/md/CL/80/CL_1001580.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000081.md b/md/CL/81/CL_0000081.md index bcb78bc4c9..cb6086d5e5 100644 --- a/md/CL/81/CL_0000081.md +++ b/md/CL/81/CL_0000081.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000181.md b/md/CL/81/CL_0000181.md index 130bb44359..0f1d7c3ea2 100644 --- a/md/CL/81/CL_0000181.md +++ b/md/CL/81/CL_0000181.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000281.md b/md/CL/81/CL_0000281.md index e5b0644559..a921090cb2 100644 --- a/md/CL/81/CL_0000281.md +++ b/md/CL/81/CL_0000281.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000381.md b/md/CL/81/CL_0000381.md index 1180993791..82362b94d3 100644 --- a/md/CL/81/CL_0000381.md +++ b/md/CL/81/CL_0000381.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000481.md b/md/CL/81/CL_0000481.md index ed5ad375bd..9c84e0c88e 100644 --- a/md/CL/81/CL_0000481.md +++ b/md/CL/81/CL_0000481.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000581.md b/md/CL/81/CL_0000581.md index 524f46d651..3da536a9f4 100644 --- a/md/CL/81/CL_0000581.md +++ b/md/CL/81/CL_0000581.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000681.md b/md/CL/81/CL_0000681.md index 12fc799ac4..7c9dc7be91 100644 --- a/md/CL/81/CL_0000681.md +++ b/md/CL/81/CL_0000681.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000781.md b/md/CL/81/CL_0000781.md index 3b9da8d410..248fc3a84d 100644 --- a/md/CL/81/CL_0000781.md +++ b/md/CL/81/CL_0000781.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000881.md b/md/CL/81/CL_0000881.md index e1c93214ce..c3ec9b3514 100644 --- a/md/CL/81/CL_0000881.md +++ b/md/CL/81/CL_0000881.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0000981.md b/md/CL/81/CL_0000981.md index 3522070780..d3405671aa 100644 --- a/md/CL/81/CL_0000981.md +++ b/md/CL/81/CL_0000981.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002081.md b/md/CL/81/CL_0002081.md index 1e11c34f7e..f1bfc200fd 100644 --- a/md/CL/81/CL_0002081.md +++ b/md/CL/81/CL_0002081.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002181.md b/md/CL/81/CL_0002181.md index d5b9375615..043351e19d 100644 --- a/md/CL/81/CL_0002181.md +++ b/md/CL/81/CL_0002181.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002281.md b/md/CL/81/CL_0002281.md index 2496ba3fe4..fe7e319495 100644 --- a/md/CL/81/CL_0002281.md +++ b/md/CL/81/CL_0002281.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002381.md b/md/CL/81/CL_0002381.md index 33ad55e44e..98ab3536b1 100644 --- a/md/CL/81/CL_0002381.md +++ b/md/CL/81/CL_0002381.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002481.md b/md/CL/81/CL_0002481.md index f425ef34b4..59f96ed57c 100644 --- a/md/CL/81/CL_0002481.md +++ b/md/CL/81/CL_0002481.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002581.md b/md/CL/81/CL_0002581.md index 0cda861a29..6e0d0eb296 100644 --- a/md/CL/81/CL_0002581.md +++ b/md/CL/81/CL_0002581.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_0002681.md b/md/CL/81/CL_0002681.md index de01cff3e3..74a91d00f2 100644 --- a/md/CL/81/CL_0002681.md +++ b/md/CL/81/CL_0002681.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_1000281.md b/md/CL/81/CL_1000281.md index 740aca2392..4aed22e1a2 100644 --- a/md/CL/81/CL_1000281.md +++ b/md/CL/81/CL_1000281.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_1000381.md b/md/CL/81/CL_1000381.md index b3fbbad269..4bdf5ef139 100644 --- a/md/CL/81/CL_1000381.md +++ b/md/CL/81/CL_1000381.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_1000481.md b/md/CL/81/CL_1000481.md index f03ecad1c2..3e961efaa0 100644 --- a/md/CL/81/CL_1000481.md +++ b/md/CL/81/CL_1000481.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_1000681.md b/md/CL/81/CL_1000681.md index 3cacad3f32..5cb458eb0e 100644 --- a/md/CL/81/CL_1000681.md +++ b/md/CL/81/CL_1000681.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/81/CL_1001581.md b/md/CL/81/CL_1001581.md index 4517a2be66..827aa2f298 100644 --- a/md/CL/81/CL_1001581.md +++ b/md/CL/81/CL_1001581.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000082.md b/md/CL/82/CL_0000082.md index fa098b811d..faa2e8fd64 100644 --- a/md/CL/82/CL_0000082.md +++ b/md/CL/82/CL_0000082.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000182.md b/md/CL/82/CL_0000182.md index b3383b1040..e34715f69b 100644 --- a/md/CL/82/CL_0000182.md +++ b/md/CL/82/CL_0000182.md @@ -32,5 +32,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000382.md b/md/CL/82/CL_0000382.md index 563c4076f9..695dd10ed8 100644 --- a/md/CL/82/CL_0000382.md +++ b/md/CL/82/CL_0000382.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000482.md b/md/CL/82/CL_0000482.md index 503fc655cc..f46d27552b 100644 --- a/md/CL/82/CL_0000482.md +++ b/md/CL/82/CL_0000482.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000582.md b/md/CL/82/CL_0000582.md index a9b6b90fc7..4abd320f79 100644 --- a/md/CL/82/CL_0000582.md +++ b/md/CL/82/CL_0000582.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000682.md b/md/CL/82/CL_0000682.md index 29dbee065f..66d0533f18 100644 --- a/md/CL/82/CL_0000682.md +++ b/md/CL/82/CL_0000682.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000782.md b/md/CL/82/CL_0000782.md index 9c22d4c846..0631cfaead 100644 --- a/md/CL/82/CL_0000782.md +++ b/md/CL/82/CL_0000782.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000882.md b/md/CL/82/CL_0000882.md index 67c5f28492..af74d78112 100644 --- a/md/CL/82/CL_0000882.md +++ b/md/CL/82/CL_0000882.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0000982.md b/md/CL/82/CL_0000982.md index e4866ebf14..1a6b7a80ee 100644 --- a/md/CL/82/CL_0000982.md +++ b/md/CL/82/CL_0000982.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002082.md b/md/CL/82/CL_0002082.md index 7cac074f12..ebedbb263b 100644 --- a/md/CL/82/CL_0002082.md +++ b/md/CL/82/CL_0002082.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002182.md b/md/CL/82/CL_0002182.md index 7ff9d9c0e8..dc3cfae35a 100644 --- a/md/CL/82/CL_0002182.md +++ b/md/CL/82/CL_0002182.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002282.md b/md/CL/82/CL_0002282.md index f6490c27b4..bce4d2a425 100644 --- a/md/CL/82/CL_0002282.md +++ b/md/CL/82/CL_0002282.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002382.md b/md/CL/82/CL_0002382.md index 2a3a2d15ce..9a853bfa64 100644 --- a/md/CL/82/CL_0002382.md +++ b/md/CL/82/CL_0002382.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002482.md b/md/CL/82/CL_0002482.md index f24fd235ab..69502ddc39 100644 --- a/md/CL/82/CL_0002482.md +++ b/md/CL/82/CL_0002482.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_0002582.md b/md/CL/82/CL_0002582.md index 6f45e526a6..de6d049a1f 100644 --- a/md/CL/82/CL_0002582.md +++ b/md/CL/82/CL_0002582.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1000082.md b/md/CL/82/CL_1000082.md index 5b35fa3f01..450ce678ae 100644 --- a/md/CL/82/CL_1000082.md +++ b/md/CL/82/CL_1000082.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1000282.md b/md/CL/82/CL_1000282.md index cda9be03a5..7eed70497a 100644 --- a/md/CL/82/CL_1000282.md +++ b/md/CL/82/CL_1000282.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1000382.md b/md/CL/82/CL_1000382.md index a5ca024a34..a5e940e810 100644 --- a/md/CL/82/CL_1000382.md +++ b/md/CL/82/CL_1000382.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1000482.md b/md/CL/82/CL_1000482.md index 01ff3e39e2..9445cd5cc0 100644 --- a/md/CL/82/CL_1000482.md +++ b/md/CL/82/CL_1000482.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1000682.md b/md/CL/82/CL_1000682.md index 14fd8ab2d1..49dc1b9631 100644 --- a/md/CL/82/CL_1000682.md +++ b/md/CL/82/CL_1000682.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/82/CL_1001582.md b/md/CL/82/CL_1001582.md index 5b3247387a..82ef5ec818 100644 --- a/md/CL/82/CL_1001582.md +++ b/md/CL/82/CL_1001582.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000083.md b/md/CL/83/CL_0000083.md index 2961dd831f..4453aad76b 100644 --- a/md/CL/83/CL_0000083.md +++ b/md/CL/83/CL_0000083.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000183.md b/md/CL/83/CL_0000183.md index 2172782363..f8a6cd8c67 100644 --- a/md/CL/83/CL_0000183.md +++ b/md/CL/83/CL_0000183.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000283.md b/md/CL/83/CL_0000283.md index 9c87b35a5c..cf944ba9bd 100644 --- a/md/CL/83/CL_0000283.md +++ b/md/CL/83/CL_0000283.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000383.md b/md/CL/83/CL_0000383.md index 356daa8be1..89eb0f1404 100644 --- a/md/CL/83/CL_0000383.md +++ b/md/CL/83/CL_0000383.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000483.md b/md/CL/83/CL_0000483.md index 547ebe58e7..b1272b9097 100644 --- a/md/CL/83/CL_0000483.md +++ b/md/CL/83/CL_0000483.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000583.md b/md/CL/83/CL_0000583.md index 72031ca93d..11ff08fbc4 100644 --- a/md/CL/83/CL_0000583.md +++ b/md/CL/83/CL_0000583.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000683.md b/md/CL/83/CL_0000683.md index 08af70ac1a..97ee840091 100644 --- a/md/CL/83/CL_0000683.md +++ b/md/CL/83/CL_0000683.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000783.md b/md/CL/83/CL_0000783.md index dd8c6b9f4d..aceef60bc8 100644 --- a/md/CL/83/CL_0000783.md +++ b/md/CL/83/CL_0000783.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000883.md b/md/CL/83/CL_0000883.md index 69d0d7f034..4f00af9bc6 100644 --- a/md/CL/83/CL_0000883.md +++ b/md/CL/83/CL_0000883.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0000983.md b/md/CL/83/CL_0000983.md index a01769d1a2..61bdeec986 100644 --- a/md/CL/83/CL_0000983.md +++ b/md/CL/83/CL_0000983.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002083.md b/md/CL/83/CL_0002083.md index 4424573949..53e5b7d878 100644 --- a/md/CL/83/CL_0002083.md +++ b/md/CL/83/CL_0002083.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002183.md b/md/CL/83/CL_0002183.md index df40b3bf51..6e701f0450 100644 --- a/md/CL/83/CL_0002183.md +++ b/md/CL/83/CL_0002183.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002283.md b/md/CL/83/CL_0002283.md index 8d4a28e24b..02d3e1d357 100644 --- a/md/CL/83/CL_0002283.md +++ b/md/CL/83/CL_0002283.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002383.md b/md/CL/83/CL_0002383.md index 802b8b971b..5fa2ce9eb3 100644 --- a/md/CL/83/CL_0002383.md +++ b/md/CL/83/CL_0002383.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002483.md b/md/CL/83/CL_0002483.md index 11276cfc72..4253098595 100644 --- a/md/CL/83/CL_0002483.md +++ b/md/CL/83/CL_0002483.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_0002583.md b/md/CL/83/CL_0002583.md index b751ea952f..0ed3d84f45 100644 --- a/md/CL/83/CL_0002583.md +++ b/md/CL/83/CL_0002583.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_1000083.md b/md/CL/83/CL_1000083.md index b3ad350700..912037a994 100644 --- a/md/CL/83/CL_1000083.md +++ b/md/CL/83/CL_1000083.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_1000283.md b/md/CL/83/CL_1000283.md index 4643f76161..7a5df674f3 100644 --- a/md/CL/83/CL_1000283.md +++ b/md/CL/83/CL_1000283.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_1000383.md b/md/CL/83/CL_1000383.md index 5d559b5dec..cdff618e50 100644 --- a/md/CL/83/CL_1000383.md +++ b/md/CL/83/CL_1000383.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/83/CL_1000483.md b/md/CL/83/CL_1000483.md index db1971cd91..ef400093dc 100644 --- a/md/CL/83/CL_1000483.md +++ b/md/CL/83/CL_1000483.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000084.md b/md/CL/84/CL_0000084.md index 326902e539..9c91809156 100644 --- a/md/CL/84/CL_0000084.md +++ b/md/CL/84/CL_0000084.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000384.md b/md/CL/84/CL_0000384.md index ea6a234860..8837165ee1 100644 --- a/md/CL/84/CL_0000384.md +++ b/md/CL/84/CL_0000384.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000484.md b/md/CL/84/CL_0000484.md index 65953e793f..98869abfa2 100644 --- a/md/CL/84/CL_0000484.md +++ b/md/CL/84/CL_0000484.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000584.md b/md/CL/84/CL_0000584.md index 1be39736e6..6b810725ec 100644 --- a/md/CL/84/CL_0000584.md +++ b/md/CL/84/CL_0000584.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000684.md b/md/CL/84/CL_0000684.md index e40fcc9845..c213710ca5 100644 --- a/md/CL/84/CL_0000684.md +++ b/md/CL/84/CL_0000684.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000784.md b/md/CL/84/CL_0000784.md index c932b1e399..11e354a81e 100644 --- a/md/CL/84/CL_0000784.md +++ b/md/CL/84/CL_0000784.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000884.md b/md/CL/84/CL_0000884.md index 50af9fbbe3..3e947f299d 100644 --- a/md/CL/84/CL_0000884.md +++ b/md/CL/84/CL_0000884.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0000984.md b/md/CL/84/CL_0000984.md index 98f1d61d97..ea281c2ed4 100644 --- a/md/CL/84/CL_0000984.md +++ b/md/CL/84/CL_0000984.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002084.md b/md/CL/84/CL_0002084.md index 65004d36b5..edc7dabdb7 100644 --- a/md/CL/84/CL_0002084.md +++ b/md/CL/84/CL_0002084.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002184.md b/md/CL/84/CL_0002184.md index 8f159036c5..a9ada9e16b 100644 --- a/md/CL/84/CL_0002184.md +++ b/md/CL/84/CL_0002184.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002284.md b/md/CL/84/CL_0002284.md index b7052eb451..1e3d0b2790 100644 --- a/md/CL/84/CL_0002284.md +++ b/md/CL/84/CL_0002284.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002384.md b/md/CL/84/CL_0002384.md index 6565625c5e..0ce727b8b3 100644 --- a/md/CL/84/CL_0002384.md +++ b/md/CL/84/CL_0002384.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002484.md b/md/CL/84/CL_0002484.md index 97440efbf4..e243c94a3d 100644 --- a/md/CL/84/CL_0002484.md +++ b/md/CL/84/CL_0002484.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_0002584.md b/md/CL/84/CL_0002584.md index 733008b975..5794d69574 100644 --- a/md/CL/84/CL_0002584.md +++ b/md/CL/84/CL_0002584.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_1000284.md b/md/CL/84/CL_1000284.md index 0d6eeeba3a..40ddb02845 100644 --- a/md/CL/84/CL_1000284.md +++ b/md/CL/84/CL_1000284.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_1000384.md b/md/CL/84/CL_1000384.md index 0e7f1ca7e9..23f53c9f80 100644 --- a/md/CL/84/CL_1000384.md +++ b/md/CL/84/CL_1000384.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/84/CL_1000484.md b/md/CL/84/CL_1000484.md index dfac22b045..4686e1c233 100644 --- a/md/CL/84/CL_1000484.md +++ b/md/CL/84/CL_1000484.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000085.md b/md/CL/85/CL_0000085.md index fb3f3f1927..4834318c11 100644 --- a/md/CL/85/CL_0000085.md +++ b/md/CL/85/CL_0000085.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000185.md b/md/CL/85/CL_0000185.md index 3c4cfb2f4b..7a0a36fa88 100644 --- a/md/CL/85/CL_0000185.md +++ b/md/CL/85/CL_0000185.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000285.md b/md/CL/85/CL_0000285.md index a6c53fcb19..53cf3e439c 100644 --- a/md/CL/85/CL_0000285.md +++ b/md/CL/85/CL_0000285.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000385.md b/md/CL/85/CL_0000385.md index 0c5f249b16..2d7f5f7334 100644 --- a/md/CL/85/CL_0000385.md +++ b/md/CL/85/CL_0000385.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000485.md b/md/CL/85/CL_0000485.md index 5560655d39..631f65d1cf 100644 --- a/md/CL/85/CL_0000485.md +++ b/md/CL/85/CL_0000485.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000785.md b/md/CL/85/CL_0000785.md index 14efdf999b..8af0bab503 100644 --- a/md/CL/85/CL_0000785.md +++ b/md/CL/85/CL_0000785.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000885.md b/md/CL/85/CL_0000885.md index 08678928f6..13747df7ba 100644 --- a/md/CL/85/CL_0000885.md +++ b/md/CL/85/CL_0000885.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0000985.md b/md/CL/85/CL_0000985.md index 65cd7cc009..39f03820a4 100644 --- a/md/CL/85/CL_0000985.md +++ b/md/CL/85/CL_0000985.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0002085.md b/md/CL/85/CL_0002085.md index 10127f234f..d8e2bc0417 100644 --- a/md/CL/85/CL_0002085.md +++ b/md/CL/85/CL_0002085.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0002285.md b/md/CL/85/CL_0002285.md index e0c2b32073..d06093b371 100644 --- a/md/CL/85/CL_0002285.md +++ b/md/CL/85/CL_0002285.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0002385.md b/md/CL/85/CL_0002385.md index 866567ff70..bf5fa422b9 100644 --- a/md/CL/85/CL_0002385.md +++ b/md/CL/85/CL_0002385.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0002485.md b/md/CL/85/CL_0002485.md index 6c69e5e07a..b256be40e7 100644 --- a/md/CL/85/CL_0002485.md +++ b/md/CL/85/CL_0002485.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_0002585.md b/md/CL/85/CL_0002585.md index 1394bb1f61..13fa544823 100644 --- a/md/CL/85/CL_0002585.md +++ b/md/CL/85/CL_0002585.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_1000085.md b/md/CL/85/CL_1000085.md index bbfeb7b08a..83cea780fb 100644 --- a/md/CL/85/CL_1000085.md +++ b/md/CL/85/CL_1000085.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_1000285.md b/md/CL/85/CL_1000285.md index 8dae11ffb5..66cca82e47 100644 --- a/md/CL/85/CL_1000285.md +++ b/md/CL/85/CL_1000285.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_1000385.md b/md/CL/85/CL_1000385.md index 29c046c796..d4e60f9db3 100644 --- a/md/CL/85/CL_1000385.md +++ b/md/CL/85/CL_1000385.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_1001285.md b/md/CL/85/CL_1001285.md index 4eae3d0ffe..af93a5fcfc 100644 --- a/md/CL/85/CL_1001285.md +++ b/md/CL/85/CL_1001285.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/85/CL_1001585.md b/md/CL/85/CL_1001585.md index 6f7b35d1ff..e3e51d1ba3 100644 --- a/md/CL/85/CL_1001585.md +++ b/md/CL/85/CL_1001585.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000086.md b/md/CL/86/CL_0000086.md index e60cf4add0..83ccf1899d 100644 --- a/md/CL/86/CL_0000086.md +++ b/md/CL/86/CL_0000086.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000186.md b/md/CL/86/CL_0000186.md index e68fb27c0a..2abef40cdc 100644 --- a/md/CL/86/CL_0000186.md +++ b/md/CL/86/CL_0000186.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000286.md b/md/CL/86/CL_0000286.md index 11b45fad02..774c2402f4 100644 --- a/md/CL/86/CL_0000286.md +++ b/md/CL/86/CL_0000286.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000386.md b/md/CL/86/CL_0000386.md index 2217163d7d..bc33efece8 100644 --- a/md/CL/86/CL_0000386.md +++ b/md/CL/86/CL_0000386.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000486.md b/md/CL/86/CL_0000486.md index 8b7db7bfac..f7b9391c2f 100644 --- a/md/CL/86/CL_0000486.md +++ b/md/CL/86/CL_0000486.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000586.md b/md/CL/86/CL_0000586.md index 4fcd197c6a..d8d70536cd 100644 --- a/md/CL/86/CL_0000586.md +++ b/md/CL/86/CL_0000586.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000686.md b/md/CL/86/CL_0000686.md index 801b7ad340..a390fbda2a 100644 --- a/md/CL/86/CL_0000686.md +++ b/md/CL/86/CL_0000686.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000786.md b/md/CL/86/CL_0000786.md index 6fd7439b4f..01d66e6ec1 100644 --- a/md/CL/86/CL_0000786.md +++ b/md/CL/86/CL_0000786.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000886.md b/md/CL/86/CL_0000886.md index cf23e9cfb1..4e49fa4027 100644 --- a/md/CL/86/CL_0000886.md +++ b/md/CL/86/CL_0000886.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0000986.md b/md/CL/86/CL_0000986.md index f27cdb408d..c383a783ac 100644 --- a/md/CL/86/CL_0000986.md +++ b/md/CL/86/CL_0000986.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0002086.md b/md/CL/86/CL_0002086.md index 97574bf610..65aec4a3e8 100644 --- a/md/CL/86/CL_0002086.md +++ b/md/CL/86/CL_0002086.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0002286.md b/md/CL/86/CL_0002286.md index 65cbae5f71..98f99ad7c2 100644 --- a/md/CL/86/CL_0002286.md +++ b/md/CL/86/CL_0002286.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0002386.md b/md/CL/86/CL_0002386.md index 642f7e7bb2..67fafb09c4 100644 --- a/md/CL/86/CL_0002386.md +++ b/md/CL/86/CL_0002386.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0002486.md b/md/CL/86/CL_0002486.md index 80ee66bb32..37d6e99758 100644 --- a/md/CL/86/CL_0002486.md +++ b/md/CL/86/CL_0002486.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_0002586.md b/md/CL/86/CL_0002586.md index 045b6ce66c..446e2fefff 100644 --- a/md/CL/86/CL_0002586.md +++ b/md/CL/86/CL_0002586.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_1000286.md b/md/CL/86/CL_1000286.md index 37fbc755ce..e017f97b39 100644 --- a/md/CL/86/CL_1000286.md +++ b/md/CL/86/CL_1000286.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_1000486.md b/md/CL/86/CL_1000486.md index 4166865a2f..be4f7ad542 100644 --- a/md/CL/86/CL_1000486.md +++ b/md/CL/86/CL_1000486.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_1001286.md b/md/CL/86/CL_1001286.md index 98b7003ad6..dfce378e0c 100644 --- a/md/CL/86/CL_1001286.md +++ b/md/CL/86/CL_1001286.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/86/CL_1001586.md b/md/CL/86/CL_1001586.md index 79926da4aa..65d98b54ea 100644 --- a/md/CL/86/CL_1001586.md +++ b/md/CL/86/CL_1001586.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000087.md b/md/CL/87/CL_0000087.md index d2d1f985e4..b55995d87b 100644 --- a/md/CL/87/CL_0000087.md +++ b/md/CL/87/CL_0000087.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000187.md b/md/CL/87/CL_0000187.md index 4c536fab00..ba87f6e1ae 100644 --- a/md/CL/87/CL_0000187.md +++ b/md/CL/87/CL_0000187.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000287.md b/md/CL/87/CL_0000287.md index e1345036f8..771afc73a5 100644 --- a/md/CL/87/CL_0000287.md +++ b/md/CL/87/CL_0000287.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000387.md b/md/CL/87/CL_0000387.md index 36fdb37ecf..c51f90a92e 100644 --- a/md/CL/87/CL_0000387.md +++ b/md/CL/87/CL_0000387.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000487.md b/md/CL/87/CL_0000487.md index b9398fa15d..d2ecc242a8 100644 --- a/md/CL/87/CL_0000487.md +++ b/md/CL/87/CL_0000487.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000587.md b/md/CL/87/CL_0000587.md index 4061dedd20..d7d8cb177f 100644 --- a/md/CL/87/CL_0000587.md +++ b/md/CL/87/CL_0000587.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000687.md b/md/CL/87/CL_0000687.md index 38f987db1f..e7fffca266 100644 --- a/md/CL/87/CL_0000687.md +++ b/md/CL/87/CL_0000687.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000787.md b/md/CL/87/CL_0000787.md index 342c51546e..fc8c11a57f 100644 --- a/md/CL/87/CL_0000787.md +++ b/md/CL/87/CL_0000787.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000887.md b/md/CL/87/CL_0000887.md index 2dcbf88d59..0e88e7ff1e 100644 --- a/md/CL/87/CL_0000887.md +++ b/md/CL/87/CL_0000887.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0000987.md b/md/CL/87/CL_0000987.md index c23de55df9..c279afbab3 100644 --- a/md/CL/87/CL_0000987.md +++ b/md/CL/87/CL_0000987.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0002087.md b/md/CL/87/CL_0002087.md index c1d39ceb89..1f29cfe318 100644 --- a/md/CL/87/CL_0002087.md +++ b/md/CL/87/CL_0002087.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0002187.md b/md/CL/87/CL_0002187.md index e31e9a09fc..cf8b983027 100644 --- a/md/CL/87/CL_0002187.md +++ b/md/CL/87/CL_0002187.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0002287.md b/md/CL/87/CL_0002287.md index 76cd1ead3c..ef8cda8009 100644 --- a/md/CL/87/CL_0002287.md +++ b/md/CL/87/CL_0002287.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0002387.md b/md/CL/87/CL_0002387.md index d7525feaf7..4e171fa163 100644 --- a/md/CL/87/CL_0002387.md +++ b/md/CL/87/CL_0002387.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_0002487.md b/md/CL/87/CL_0002487.md index 4c71cc4521..596f5c587a 100644 --- a/md/CL/87/CL_0002487.md +++ b/md/CL/87/CL_0002487.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_1000287.md b/md/CL/87/CL_1000287.md index 4dd10d8e2f..569abc8c6b 100644 --- a/md/CL/87/CL_1000287.md +++ b/md/CL/87/CL_1000287.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_1000487.md b/md/CL/87/CL_1000487.md index b8dd0d0c75..dbc7dd82eb 100644 --- a/md/CL/87/CL_1000487.md +++ b/md/CL/87/CL_1000487.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_1001287.md b/md/CL/87/CL_1001287.md index 3c23582b46..6fe2cfa622 100644 --- a/md/CL/87/CL_1001287.md +++ b/md/CL/87/CL_1001287.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/87/CL_1001587.md b/md/CL/87/CL_1001587.md index 5f56d35f3c..f79ad54521 100644 --- a/md/CL/87/CL_1001587.md +++ b/md/CL/87/CL_1001587.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000088.md b/md/CL/88/CL_0000088.md index 8379a0b571..57c76ac5d6 100644 --- a/md/CL/88/CL_0000088.md +++ b/md/CL/88/CL_0000088.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000188.md b/md/CL/88/CL_0000188.md index e174e261f4..fd8dff635b 100644 --- a/md/CL/88/CL_0000188.md +++ b/md/CL/88/CL_0000188.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000388.md b/md/CL/88/CL_0000388.md index 6e76abbd1a..6c21518014 100644 --- a/md/CL/88/CL_0000388.md +++ b/md/CL/88/CL_0000388.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000488.md b/md/CL/88/CL_0000488.md index 89ef9442fe..7a47764e47 100644 --- a/md/CL/88/CL_0000488.md +++ b/md/CL/88/CL_0000488.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000588.md b/md/CL/88/CL_0000588.md index 4589213c89..ce4bc3775b 100644 --- a/md/CL/88/CL_0000588.md +++ b/md/CL/88/CL_0000588.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000688.md b/md/CL/88/CL_0000688.md index 5d20d102c3..ca22f23c44 100644 --- a/md/CL/88/CL_0000688.md +++ b/md/CL/88/CL_0000688.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000788.md b/md/CL/88/CL_0000788.md index 125c680863..ef4b29ee54 100644 --- a/md/CL/88/CL_0000788.md +++ b/md/CL/88/CL_0000788.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000888.md b/md/CL/88/CL_0000888.md index ce706e8828..eba5d25b62 100644 --- a/md/CL/88/CL_0000888.md +++ b/md/CL/88/CL_0000888.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0000988.md b/md/CL/88/CL_0000988.md index 5f741744ed..3000dfca3b 100644 --- a/md/CL/88/CL_0000988.md +++ b/md/CL/88/CL_0000988.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002088.md b/md/CL/88/CL_0002088.md index 31ae31e7e4..bfade15978 100644 --- a/md/CL/88/CL_0002088.md +++ b/md/CL/88/CL_0002088.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002188.md b/md/CL/88/CL_0002188.md index 0c4f169ffa..36d45037a5 100644 --- a/md/CL/88/CL_0002188.md +++ b/md/CL/88/CL_0002188.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002288.md b/md/CL/88/CL_0002288.md index 4a3b6bf8a9..981f5c84eb 100644 --- a/md/CL/88/CL_0002288.md +++ b/md/CL/88/CL_0002288.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002388.md b/md/CL/88/CL_0002388.md index 50b2c74519..17e56e84c6 100644 --- a/md/CL/88/CL_0002388.md +++ b/md/CL/88/CL_0002388.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002488.md b/md/CL/88/CL_0002488.md index 21b7ff87b7..38874a6301 100644 --- a/md/CL/88/CL_0002488.md +++ b/md/CL/88/CL_0002488.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_0002588.md b/md/CL/88/CL_0002588.md index f2257d712f..ab72cfff66 100644 --- a/md/CL/88/CL_0002588.md +++ b/md/CL/88/CL_0002588.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_1000288.md b/md/CL/88/CL_1000288.md index 6b0efddf12..938cf83630 100644 --- a/md/CL/88/CL_1000288.md +++ b/md/CL/88/CL_1000288.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_1000488.md b/md/CL/88/CL_1000488.md index 0d8a25d822..6a5ca37678 100644 --- a/md/CL/88/CL_1000488.md +++ b/md/CL/88/CL_1000488.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/88/CL_1001588.md b/md/CL/88/CL_1001588.md index 817329659b..b41c1820a3 100644 --- a/md/CL/88/CL_1001588.md +++ b/md/CL/88/CL_1001588.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000089.md b/md/CL/89/CL_0000089.md index 4ef613f16b..cb19d3d591 100644 --- a/md/CL/89/CL_0000089.md +++ b/md/CL/89/CL_0000089.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000189.md b/md/CL/89/CL_0000189.md index aaa546f7c2..fb80a6f1aa 100644 --- a/md/CL/89/CL_0000189.md +++ b/md/CL/89/CL_0000189.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000289.md b/md/CL/89/CL_0000289.md index f3dd242ac2..6f43b97477 100644 --- a/md/CL/89/CL_0000289.md +++ b/md/CL/89/CL_0000289.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000389.md b/md/CL/89/CL_0000389.md index 70d1526a87..e03d125bbd 100644 --- a/md/CL/89/CL_0000389.md +++ b/md/CL/89/CL_0000389.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000489.md b/md/CL/89/CL_0000489.md index 767000108a..4a75be2c30 100644 --- a/md/CL/89/CL_0000489.md +++ b/md/CL/89/CL_0000489.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000589.md b/md/CL/89/CL_0000589.md index 949ab5bfe8..cb6966d50d 100644 --- a/md/CL/89/CL_0000589.md +++ b/md/CL/89/CL_0000589.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000689.md b/md/CL/89/CL_0000689.md index 701b0a764a..3579bab565 100644 --- a/md/CL/89/CL_0000689.md +++ b/md/CL/89/CL_0000689.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000789.md b/md/CL/89/CL_0000789.md index 620e3f458c..a56bf9e32f 100644 --- a/md/CL/89/CL_0000789.md +++ b/md/CL/89/CL_0000789.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000889.md b/md/CL/89/CL_0000889.md index 1ceb732512..1f30e06923 100644 --- a/md/CL/89/CL_0000889.md +++ b/md/CL/89/CL_0000889.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0000989.md b/md/CL/89/CL_0000989.md index 52a507fbf2..40e6eabcb3 100644 --- a/md/CL/89/CL_0000989.md +++ b/md/CL/89/CL_0000989.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002089.md b/md/CL/89/CL_0002089.md index 9c0dd50e3e..512700d13c 100644 --- a/md/CL/89/CL_0002089.md +++ b/md/CL/89/CL_0002089.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002189.md b/md/CL/89/CL_0002189.md index cdb5eb823d..9839c39bae 100644 --- a/md/CL/89/CL_0002189.md +++ b/md/CL/89/CL_0002189.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002289.md b/md/CL/89/CL_0002289.md index a1557cc984..d538c817f2 100644 --- a/md/CL/89/CL_0002289.md +++ b/md/CL/89/CL_0002289.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002389.md b/md/CL/89/CL_0002389.md index 4ce0d084ab..0e2741631c 100644 --- a/md/CL/89/CL_0002389.md +++ b/md/CL/89/CL_0002389.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002489.md b/md/CL/89/CL_0002489.md index b4ac89a810..6acbb475c3 100644 --- a/md/CL/89/CL_0002489.md +++ b/md/CL/89/CL_0002489.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_0002589.md b/md/CL/89/CL_0002589.md index 7032a5349b..35140331b5 100644 --- a/md/CL/89/CL_0002589.md +++ b/md/CL/89/CL_0002589.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_1000289.md b/md/CL/89/CL_1000289.md index 52fe8e6622..801dc9ea4b 100644 --- a/md/CL/89/CL_1000289.md +++ b/md/CL/89/CL_1000289.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_1000489.md b/md/CL/89/CL_1000489.md index c2550f5529..3e18e2a224 100644 --- a/md/CL/89/CL_1000489.md +++ b/md/CL/89/CL_1000489.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/89/CL_1001589.md b/md/CL/89/CL_1001589.md index 7b304a3108..f0a45fd275 100644 --- a/md/CL/89/CL_1001589.md +++ b/md/CL/89/CL_1001589.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000090.md b/md/CL/90/CL_0000090.md index b3ecec84b7..e3dceb09d1 100644 --- a/md/CL/90/CL_0000090.md +++ b/md/CL/90/CL_0000090.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000190.md b/md/CL/90/CL_0000190.md index 40d9e4ffcf..3b52e56173 100644 --- a/md/CL/90/CL_0000190.md +++ b/md/CL/90/CL_0000190.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000390.md b/md/CL/90/CL_0000390.md index 989d06778c..093f8de54b 100644 --- a/md/CL/90/CL_0000390.md +++ b/md/CL/90/CL_0000390.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000490.md b/md/CL/90/CL_0000490.md index a7dadd1e52..dbade6e67a 100644 --- a/md/CL/90/CL_0000490.md +++ b/md/CL/90/CL_0000490.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000590.md b/md/CL/90/CL_0000590.md index 66a0e67f6a..7cc96133bc 100644 --- a/md/CL/90/CL_0000590.md +++ b/md/CL/90/CL_0000590.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000690.md b/md/CL/90/CL_0000690.md index 301ea97bed..c9e0228dbd 100644 --- a/md/CL/90/CL_0000690.md +++ b/md/CL/90/CL_0000690.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000790.md b/md/CL/90/CL_0000790.md index 726b42bf6f..180de4bad8 100644 --- a/md/CL/90/CL_0000790.md +++ b/md/CL/90/CL_0000790.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000890.md b/md/CL/90/CL_0000890.md index 99891b542f..0015d61302 100644 --- a/md/CL/90/CL_0000890.md +++ b/md/CL/90/CL_0000890.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0000990.md b/md/CL/90/CL_0000990.md index f63492c6d2..ab4f8e4526 100644 --- a/md/CL/90/CL_0000990.md +++ b/md/CL/90/CL_0000990.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002090.md b/md/CL/90/CL_0002090.md index e8e839a469..10f7e79215 100644 --- a/md/CL/90/CL_0002090.md +++ b/md/CL/90/CL_0002090.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002190.md b/md/CL/90/CL_0002190.md index 42886d3628..6e9704b8eb 100644 --- a/md/CL/90/CL_0002190.md +++ b/md/CL/90/CL_0002190.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002290.md b/md/CL/90/CL_0002290.md index 4391bed278..90691105a8 100644 --- a/md/CL/90/CL_0002290.md +++ b/md/CL/90/CL_0002290.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002390.md b/md/CL/90/CL_0002390.md index 78774a7c6a..ff52473e0c 100644 --- a/md/CL/90/CL_0002390.md +++ b/md/CL/90/CL_0002390.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002490.md b/md/CL/90/CL_0002490.md index 19f05ee335..9ad13ed34a 100644 --- a/md/CL/90/CL_0002490.md +++ b/md/CL/90/CL_0002490.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_0002590.md b/md/CL/90/CL_0002590.md index 433c5670c5..4a02a3103b 100644 --- a/md/CL/90/CL_0002590.md +++ b/md/CL/90/CL_0002590.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_1000290.md b/md/CL/90/CL_1000290.md index 7865268363..becf36e03c 100644 --- a/md/CL/90/CL_1000290.md +++ b/md/CL/90/CL_1000290.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_1000490.md b/md/CL/90/CL_1000490.md index ec9dc9a767..2f3832ef96 100644 --- a/md/CL/90/CL_1000490.md +++ b/md/CL/90/CL_1000490.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/90/CL_1001590.md b/md/CL/90/CL_1001590.md index 50f120b138..219dabbb68 100644 --- a/md/CL/90/CL_1001590.md +++ b/md/CL/90/CL_1001590.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000091.md b/md/CL/91/CL_0000091.md index 83457e7681..605202a51a 100644 --- a/md/CL/91/CL_0000091.md +++ b/md/CL/91/CL_0000091.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000291.md b/md/CL/91/CL_0000291.md index 0ada21146d..23c43ea345 100644 --- a/md/CL/91/CL_0000291.md +++ b/md/CL/91/CL_0000291.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000391.md b/md/CL/91/CL_0000391.md index 58f2c45744..2764792c0c 100644 --- a/md/CL/91/CL_0000391.md +++ b/md/CL/91/CL_0000391.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000591.md b/md/CL/91/CL_0000591.md index d236dc12fd..f269b8cea9 100644 --- a/md/CL/91/CL_0000591.md +++ b/md/CL/91/CL_0000591.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000691.md b/md/CL/91/CL_0000691.md index f3ec1e8af6..1473fea277 100644 --- a/md/CL/91/CL_0000691.md +++ b/md/CL/91/CL_0000691.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000791.md b/md/CL/91/CL_0000791.md index 90072514f8..94f59e36cb 100644 --- a/md/CL/91/CL_0000791.md +++ b/md/CL/91/CL_0000791.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000891.md b/md/CL/91/CL_0000891.md index 05dbd3ae7c..859a446fcb 100644 --- a/md/CL/91/CL_0000891.md +++ b/md/CL/91/CL_0000891.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0000991.md b/md/CL/91/CL_0000991.md index a3cb570f7a..b375a9f97a 100644 --- a/md/CL/91/CL_0000991.md +++ b/md/CL/91/CL_0000991.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002091.md b/md/CL/91/CL_0002091.md index d763b0af9f..c323758a10 100644 --- a/md/CL/91/CL_0002091.md +++ b/md/CL/91/CL_0002091.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002191.md b/md/CL/91/CL_0002191.md index 6e5f0e487d..64605edd81 100644 --- a/md/CL/91/CL_0002191.md +++ b/md/CL/91/CL_0002191.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002291.md b/md/CL/91/CL_0002291.md index d1839da4b3..6e9655c474 100644 --- a/md/CL/91/CL_0002291.md +++ b/md/CL/91/CL_0002291.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002391.md b/md/CL/91/CL_0002391.md index 081e780f1a..c9a994c140 100644 --- a/md/CL/91/CL_0002391.md +++ b/md/CL/91/CL_0002391.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002491.md b/md/CL/91/CL_0002491.md index 30eb54cbaf..154dfda48c 100644 --- a/md/CL/91/CL_0002491.md +++ b/md/CL/91/CL_0002491.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_0002591.md b/md/CL/91/CL_0002591.md index f6040cc55c..750500b627 100644 --- a/md/CL/91/CL_0002591.md +++ b/md/CL/91/CL_0002591.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000191.md b/md/CL/91/CL_1000191.md index 106c4e4912..8c042066bc 100644 --- a/md/CL/91/CL_1000191.md +++ b/md/CL/91/CL_1000191.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000291.md b/md/CL/91/CL_1000291.md index 512c98aa56..d8dad632d7 100644 --- a/md/CL/91/CL_1000291.md +++ b/md/CL/91/CL_1000291.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000391.md b/md/CL/91/CL_1000391.md index 778dccbd1d..acca5b276e 100644 --- a/md/CL/91/CL_1000391.md +++ b/md/CL/91/CL_1000391.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000491.md b/md/CL/91/CL_1000491.md index 759696ef2a..2118b92fe9 100644 --- a/md/CL/91/CL_1000491.md +++ b/md/CL/91/CL_1000491.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000691.md b/md/CL/91/CL_1000691.md index 66e285f961..63e459d001 100644 --- a/md/CL/91/CL_1000691.md +++ b/md/CL/91/CL_1000691.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1000891.md b/md/CL/91/CL_1000891.md index fdf9d81982..fbe4845c03 100644 --- a/md/CL/91/CL_1000891.md +++ b/md/CL/91/CL_1000891.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/91/CL_1001591.md b/md/CL/91/CL_1001591.md index 01db05fc7b..dd03275301 100644 --- a/md/CL/91/CL_1001591.md +++ b/md/CL/91/CL_1001591.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000092.md b/md/CL/92/CL_0000092.md index 9aeca4fad7..15fec5d4ba 100644 --- a/md/CL/92/CL_0000092.md +++ b/md/CL/92/CL_0000092.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000192.md b/md/CL/92/CL_0000192.md index 58dd052bb1..1bc125ee81 100644 --- a/md/CL/92/CL_0000192.md +++ b/md/CL/92/CL_0000192.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000392.md b/md/CL/92/CL_0000392.md index 42af2c0afe..5d1f94a389 100644 --- a/md/CL/92/CL_0000392.md +++ b/md/CL/92/CL_0000392.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000492.md b/md/CL/92/CL_0000492.md index ca7f51fd87..086182afcb 100644 --- a/md/CL/92/CL_0000492.md +++ b/md/CL/92/CL_0000492.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000592.md b/md/CL/92/CL_0000592.md index 32dfb3306a..59b6b6e24a 100644 --- a/md/CL/92/CL_0000592.md +++ b/md/CL/92/CL_0000592.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000692.md b/md/CL/92/CL_0000692.md index 00668d87ba..d0495b63af 100644 --- a/md/CL/92/CL_0000692.md +++ b/md/CL/92/CL_0000692.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000792.md b/md/CL/92/CL_0000792.md index 825e5fd100..c2ed282355 100644 --- a/md/CL/92/CL_0000792.md +++ b/md/CL/92/CL_0000792.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000892.md b/md/CL/92/CL_0000892.md index 9da396f57f..6f93a99c01 100644 --- a/md/CL/92/CL_0000892.md +++ b/md/CL/92/CL_0000892.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0000992.md b/md/CL/92/CL_0000992.md index 0a1148e10a..3870e80843 100644 --- a/md/CL/92/CL_0000992.md +++ b/md/CL/92/CL_0000992.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0002092.md b/md/CL/92/CL_0002092.md index d4fbb7de77..890021aa9c 100644 --- a/md/CL/92/CL_0002092.md +++ b/md/CL/92/CL_0002092.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0002192.md b/md/CL/92/CL_0002192.md index adf6693075..e181a8eac8 100644 --- a/md/CL/92/CL_0002192.md +++ b/md/CL/92/CL_0002192.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0002292.md b/md/CL/92/CL_0002292.md index d4e07e176c..dca7260f1e 100644 --- a/md/CL/92/CL_0002292.md +++ b/md/CL/92/CL_0002292.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0002492.md b/md/CL/92/CL_0002492.md index 8ebb59aabf..cdc187119f 100644 --- a/md/CL/92/CL_0002492.md +++ b/md/CL/92/CL_0002492.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_0002592.md b/md/CL/92/CL_0002592.md index 669ff11cf6..12e9e314c6 100644 --- a/md/CL/92/CL_0002592.md +++ b/md/CL/92/CL_0002592.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_1000492.md b/md/CL/92/CL_1000492.md index b6f77cc2bb..b8a4789678 100644 --- a/md/CL/92/CL_1000492.md +++ b/md/CL/92/CL_1000492.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_1000692.md b/md/CL/92/CL_1000692.md index a10113c74d..d97ad24efe 100644 --- a/md/CL/92/CL_1000692.md +++ b/md/CL/92/CL_1000692.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_1000892.md b/md/CL/92/CL_1000892.md index a0fcff0a6d..a61ee82805 100644 --- a/md/CL/92/CL_1000892.md +++ b/md/CL/92/CL_1000892.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/92/CL_1001592.md b/md/CL/92/CL_1001592.md index 21e14d5f56..b160b9937c 100644 --- a/md/CL/92/CL_1001592.md +++ b/md/CL/92/CL_1001592.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000193.md b/md/CL/93/CL_0000193.md index 31fecfc79b..2842fb229a 100644 --- a/md/CL/93/CL_0000193.md +++ b/md/CL/93/CL_0000193.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000293.md b/md/CL/93/CL_0000293.md index 9da74f0c86..0e341e6d37 100644 --- a/md/CL/93/CL_0000293.md +++ b/md/CL/93/CL_0000293.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000393.md b/md/CL/93/CL_0000393.md index 991f307974..4c77924112 100644 --- a/md/CL/93/CL_0000393.md +++ b/md/CL/93/CL_0000393.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000593.md b/md/CL/93/CL_0000593.md index 0b0ddbc2a0..89031d4b6d 100644 --- a/md/CL/93/CL_0000593.md +++ b/md/CL/93/CL_0000593.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000693.md b/md/CL/93/CL_0000693.md index bff9287360..b2c1d54547 100644 --- a/md/CL/93/CL_0000693.md +++ b/md/CL/93/CL_0000693.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000793.md b/md/CL/93/CL_0000793.md index 5780bcd4ab..bfc38bcf6f 100644 --- a/md/CL/93/CL_0000793.md +++ b/md/CL/93/CL_0000793.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000893.md b/md/CL/93/CL_0000893.md index bdbb33684b..caa193ecf9 100644 --- a/md/CL/93/CL_0000893.md +++ b/md/CL/93/CL_0000893.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0000993.md b/md/CL/93/CL_0000993.md index 46dfddb9f3..3f6bfed1ec 100644 --- a/md/CL/93/CL_0000993.md +++ b/md/CL/93/CL_0000993.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002093.md b/md/CL/93/CL_0002093.md index a72e9237ce..0db2543fbd 100644 --- a/md/CL/93/CL_0002093.md +++ b/md/CL/93/CL_0002093.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002193.md b/md/CL/93/CL_0002193.md index 6ad5bc2208..75b5a37709 100644 --- a/md/CL/93/CL_0002193.md +++ b/md/CL/93/CL_0002193.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002293.md b/md/CL/93/CL_0002293.md index 9b5309cc11..034b899b55 100644 --- a/md/CL/93/CL_0002293.md +++ b/md/CL/93/CL_0002293.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002393.md b/md/CL/93/CL_0002393.md index 309693d6d6..0b58af171d 100644 --- a/md/CL/93/CL_0002393.md +++ b/md/CL/93/CL_0002393.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002493.md b/md/CL/93/CL_0002493.md index 5e43b8b114..e13d1b12da 100644 --- a/md/CL/93/CL_0002493.md +++ b/md/CL/93/CL_0002493.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_0002593.md b/md/CL/93/CL_0002593.md index 74a66ca937..5c80ad0c28 100644 --- a/md/CL/93/CL_0002593.md +++ b/md/CL/93/CL_0002593.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_1000493.md b/md/CL/93/CL_1000493.md index a4b53ba181..b0fc2e1886 100644 --- a/md/CL/93/CL_1000493.md +++ b/md/CL/93/CL_1000493.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_1000693.md b/md/CL/93/CL_1000693.md index 34a181b20b..9b9d701abc 100644 --- a/md/CL/93/CL_1000693.md +++ b/md/CL/93/CL_1000693.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_1000893.md b/md/CL/93/CL_1000893.md index 81229969cb..bf59552d13 100644 --- a/md/CL/93/CL_1000893.md +++ b/md/CL/93/CL_1000893.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/93/CL_1001593.md b/md/CL/93/CL_1001593.md index e1f5de692b..bc5e6762e2 100644 --- a/md/CL/93/CL_1001593.md +++ b/md/CL/93/CL_1001593.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000094.md b/md/CL/94/CL_0000094.md index da7f183683..891df11aba 100644 --- a/md/CL/94/CL_0000094.md +++ b/md/CL/94/CL_0000094.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000394.md b/md/CL/94/CL_0000394.md index 6dae4ff151..409a8e79b3 100644 --- a/md/CL/94/CL_0000394.md +++ b/md/CL/94/CL_0000394.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000494.md b/md/CL/94/CL_0000494.md index aee96785e1..0abc51c748 100644 --- a/md/CL/94/CL_0000494.md +++ b/md/CL/94/CL_0000494.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000594.md b/md/CL/94/CL_0000594.md index 9df4dc3a0c..7584d2abe6 100644 --- a/md/CL/94/CL_0000594.md +++ b/md/CL/94/CL_0000594.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000694.md b/md/CL/94/CL_0000694.md index 8eea3248df..e799abcbc5 100644 --- a/md/CL/94/CL_0000694.md +++ b/md/CL/94/CL_0000694.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000794.md b/md/CL/94/CL_0000794.md index 64968fdc4c..dd809347be 100644 --- a/md/CL/94/CL_0000794.md +++ b/md/CL/94/CL_0000794.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000894.md b/md/CL/94/CL_0000894.md index 91a20de721..169cf596c6 100644 --- a/md/CL/94/CL_0000894.md +++ b/md/CL/94/CL_0000894.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0000994.md b/md/CL/94/CL_0000994.md index 009815b304..eae0c81c0c 100644 --- a/md/CL/94/CL_0000994.md +++ b/md/CL/94/CL_0000994.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002094.md b/md/CL/94/CL_0002094.md index 4f0e2d2ee5..a430151bac 100644 --- a/md/CL/94/CL_0002094.md +++ b/md/CL/94/CL_0002094.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002194.md b/md/CL/94/CL_0002194.md index 29a1acfcf3..3fe340cfea 100644 --- a/md/CL/94/CL_0002194.md +++ b/md/CL/94/CL_0002194.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002294.md b/md/CL/94/CL_0002294.md index 8231901469..f9527c7b99 100644 --- a/md/CL/94/CL_0002294.md +++ b/md/CL/94/CL_0002294.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002394.md b/md/CL/94/CL_0002394.md index 4f809721da..982e56265a 100644 --- a/md/CL/94/CL_0002394.md +++ b/md/CL/94/CL_0002394.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002494.md b/md/CL/94/CL_0002494.md index 29aba7e858..b15717076b 100644 --- a/md/CL/94/CL_0002494.md +++ b/md/CL/94/CL_0002494.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_0002594.md b/md/CL/94/CL_0002594.md index b7eeff6568..fee2ce4152 100644 --- a/md/CL/94/CL_0002594.md +++ b/md/CL/94/CL_0002594.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_1000394.md b/md/CL/94/CL_1000394.md index 989df9ded4..5f8b30df7e 100644 --- a/md/CL/94/CL_1000394.md +++ b/md/CL/94/CL_1000394.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/94/CL_1000494.md b/md/CL/94/CL_1000494.md index e10a2c3b02..6bd1a80c99 100644 --- a/md/CL/94/CL_1000494.md +++ b/md/CL/94/CL_1000494.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000095.md b/md/CL/95/CL_0000095.md index 355163779b..b3a14d9f3d 100644 --- a/md/CL/95/CL_0000095.md +++ b/md/CL/95/CL_0000095.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000295.md b/md/CL/95/CL_0000295.md index 3faffd5d6f..387564d5a9 100644 --- a/md/CL/95/CL_0000295.md +++ b/md/CL/95/CL_0000295.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000395.md b/md/CL/95/CL_0000395.md index 10f7a7fe74..af40610ca9 100644 --- a/md/CL/95/CL_0000395.md +++ b/md/CL/95/CL_0000395.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000495.md b/md/CL/95/CL_0000495.md index 95df10047d..f49c451e14 100644 --- a/md/CL/95/CL_0000495.md +++ b/md/CL/95/CL_0000495.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000595.md b/md/CL/95/CL_0000595.md index 87f05704ee..f6bc63f4d9 100644 --- a/md/CL/95/CL_0000595.md +++ b/md/CL/95/CL_0000595.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000695.md b/md/CL/95/CL_0000695.md index 41e154a216..69cd538572 100644 --- a/md/CL/95/CL_0000695.md +++ b/md/CL/95/CL_0000695.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000795.md b/md/CL/95/CL_0000795.md index 9573d8251b..8ddefc5d65 100644 --- a/md/CL/95/CL_0000795.md +++ b/md/CL/95/CL_0000795.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000895.md b/md/CL/95/CL_0000895.md index 6e2cea127f..a70aa41207 100644 --- a/md/CL/95/CL_0000895.md +++ b/md/CL/95/CL_0000895.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0000995.md b/md/CL/95/CL_0000995.md index 046ba06da4..36cc404e65 100644 --- a/md/CL/95/CL_0000995.md +++ b/md/CL/95/CL_0000995.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [CD34-positive, CD38-positive common lymphoid progenitor](../../CL/21/CL_0001021.md)or[CD34-positive, CD38-positive common myeloid progenitor](../../CL/26/CL_0001026.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002095.md b/md/CL/95/CL_0002095.md index dd99286c5e..ae9b3f4588 100644 --- a/md/CL/95/CL_0002095.md +++ b/md/CL/95/CL_0002095.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002195.md b/md/CL/95/CL_0002195.md index c543ce6cfe..959533dd88 100644 --- a/md/CL/95/CL_0002195.md +++ b/md/CL/95/CL_0002195.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002295.md b/md/CL/95/CL_0002295.md index ab9f9d9e43..230ef42977 100644 --- a/md/CL/95/CL_0002295.md +++ b/md/CL/95/CL_0002295.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002395.md b/md/CL/95/CL_0002395.md index 010353273b..bd809f6aa6 100644 --- a/md/CL/95/CL_0002395.md +++ b/md/CL/95/CL_0002395.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002495.md b/md/CL/95/CL_0002495.md index 74349c7f1e..51e4729379 100644 --- a/md/CL/95/CL_0002495.md +++ b/md/CL/95/CL_0002495.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_0002595.md b/md/CL/95/CL_0002595.md index 66c144eb57..189bb2e93b 100644 --- a/md/CL/95/CL_0002595.md +++ b/md/CL/95/CL_0002595.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_1000495.md b/md/CL/95/CL_1000495.md index 9bbc95859e..3b08a6e52f 100644 --- a/md/CL/95/CL_1000495.md +++ b/md/CL/95/CL_1000495.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_1000695.md b/md/CL/95/CL_1000695.md index 5341971f06..7a58d859b9 100644 --- a/md/CL/95/CL_1000695.md +++ b/md/CL/95/CL_1000695.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/95/CL_1001595.md b/md/CL/95/CL_1001595.md index 0e2d5aa7a8..aec68e188f 100644 --- a/md/CL/95/CL_1001595.md +++ b/md/CL/95/CL_1001595.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000096.md b/md/CL/96/CL_0000096.md index 062fe13111..f9e1e08e8f 100644 --- a/md/CL/96/CL_0000096.md +++ b/md/CL/96/CL_0000096.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000196.md b/md/CL/96/CL_0000196.md index 68968d362b..bcd129b93e 100644 --- a/md/CL/96/CL_0000196.md +++ b/md/CL/96/CL_0000196.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000396.md b/md/CL/96/CL_0000396.md index 07b002e4e3..3db9266a01 100644 --- a/md/CL/96/CL_0000396.md +++ b/md/CL/96/CL_0000396.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000496.md b/md/CL/96/CL_0000496.md index c5ce3ecc65..2ff6731915 100644 --- a/md/CL/96/CL_0000496.md +++ b/md/CL/96/CL_0000496.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000596.md b/md/CL/96/CL_0000596.md index 7daa1729a5..5f3babbb82 100644 --- a/md/CL/96/CL_0000596.md +++ b/md/CL/96/CL_0000596.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000696.md b/md/CL/96/CL_0000696.md index 8bbb798fc6..bff51d4b8a 100644 --- a/md/CL/96/CL_0000696.md +++ b/md/CL/96/CL_0000696.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000796.md b/md/CL/96/CL_0000796.md index 2c214c2098..f201c3551b 100644 --- a/md/CL/96/CL_0000796.md +++ b/md/CL/96/CL_0000796.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000896.md b/md/CL/96/CL_0000896.md index 2838f8c89a..b45385dfc7 100644 --- a/md/CL/96/CL_0000896.md +++ b/md/CL/96/CL_0000896.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0000996.md b/md/CL/96/CL_0000996.md index 4b2b6e9768..1ff90e6367 100644 --- a/md/CL/96/CL_0000996.md +++ b/md/CL/96/CL_0000996.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002096.md b/md/CL/96/CL_0002096.md index 6ffa846dc9..d3b3999e62 100644 --- a/md/CL/96/CL_0002096.md +++ b/md/CL/96/CL_0002096.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002196.md b/md/CL/96/CL_0002196.md index 4f3bc6ce97..f53f9f1c17 100644 --- a/md/CL/96/CL_0002196.md +++ b/md/CL/96/CL_0002196.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002296.md b/md/CL/96/CL_0002296.md index 7be76bd847..295311d1da 100644 --- a/md/CL/96/CL_0002296.md +++ b/md/CL/96/CL_0002296.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002396.md b/md/CL/96/CL_0002396.md index 57d415f70c..3833c18e5d 100644 --- a/md/CL/96/CL_0002396.md +++ b/md/CL/96/CL_0002396.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002496.md b/md/CL/96/CL_0002496.md index f04d5823c9..26983154b7 100644 --- a/md/CL/96/CL_0002496.md +++ b/md/CL/96/CL_0002496.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_0002596.md b/md/CL/96/CL_0002596.md index 80125a4aae..76820a1bfa 100644 --- a/md/CL/96/CL_0002596.md +++ b/md/CL/96/CL_0002596.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_1000296.md b/md/CL/96/CL_1000296.md index c4996a8428..1bd7507ad8 100644 --- a/md/CL/96/CL_1000296.md +++ b/md/CL/96/CL_1000296.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_1000596.md b/md/CL/96/CL_1000596.md index 8ec2da1283..0403d57f99 100644 --- a/md/CL/96/CL_1000596.md +++ b/md/CL/96/CL_1000596.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_1000696.md b/md/CL/96/CL_1000696.md index 08663a8942..8e35c94c34 100644 --- a/md/CL/96/CL_1000696.md +++ b/md/CL/96/CL_1000696.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_1001096.md b/md/CL/96/CL_1001096.md index 9165a33fe0..451f53fd3c 100644 --- a/md/CL/96/CL_1001096.md +++ b/md/CL/96/CL_1001096.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/96/CL_1001596.md b/md/CL/96/CL_1001596.md index 69239e0657..ebc8268468 100644 --- a/md/CL/96/CL_1001596.md +++ b/md/CL/96/CL_1001596.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000097.md b/md/CL/97/CL_0000097.md index 5607f84266..0bc826c610 100644 --- a/md/CL/97/CL_0000097.md +++ b/md/CL/97/CL_0000097.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000197.md b/md/CL/97/CL_0000197.md index f134055a4e..171c141057 100644 --- a/md/CL/97/CL_0000197.md +++ b/md/CL/97/CL_0000197.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000397.md b/md/CL/97/CL_0000397.md index b193c0b8d3..c7794c253c 100644 --- a/md/CL/97/CL_0000397.md +++ b/md/CL/97/CL_0000397.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000497.md b/md/CL/97/CL_0000497.md index 550a9376ba..598940b826 100644 --- a/md/CL/97/CL_0000497.md +++ b/md/CL/97/CL_0000497.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000597.md b/md/CL/97/CL_0000597.md index 04b004765a..af91d8859e 100644 --- a/md/CL/97/CL_0000597.md +++ b/md/CL/97/CL_0000597.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000697.md b/md/CL/97/CL_0000697.md index 68549a63dc..5e5ad79afc 100644 --- a/md/CL/97/CL_0000697.md +++ b/md/CL/97/CL_0000697.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000797.md b/md/CL/97/CL_0000797.md index 804193ede4..8148b78607 100644 --- a/md/CL/97/CL_0000797.md +++ b/md/CL/97/CL_0000797.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000897.md b/md/CL/97/CL_0000897.md index c7adf11daf..4096e9088d 100644 --- a/md/CL/97/CL_0000897.md +++ b/md/CL/97/CL_0000897.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0000997.md b/md/CL/97/CL_0000997.md index f8a5221305..c62668a4a5 100644 --- a/md/CL/97/CL_0000997.md +++ b/md/CL/97/CL_0000997.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002097.md b/md/CL/97/CL_0002097.md index 1de8f3dbc3..1c1e82f171 100644 --- a/md/CL/97/CL_0002097.md +++ b/md/CL/97/CL_0002097.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002197.md b/md/CL/97/CL_0002197.md index bd1ec11e14..85ff2efc48 100644 --- a/md/CL/97/CL_0002197.md +++ b/md/CL/97/CL_0002197.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002297.md b/md/CL/97/CL_0002297.md index 10d2115bdb..cc09eff1d6 100644 --- a/md/CL/97/CL_0002297.md +++ b/md/CL/97/CL_0002297.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002397.md b/md/CL/97/CL_0002397.md index 9e756d979b..f221fdc5e3 100644 --- a/md/CL/97/CL_0002397.md +++ b/md/CL/97/CL_0002397.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002497.md b/md/CL/97/CL_0002497.md index b40eaf5af2..03a26d3b07 100644 --- a/md/CL/97/CL_0002497.md +++ b/md/CL/97/CL_0002497.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_0002597.md b/md/CL/97/CL_0002597.md index 6b09ee9d6a..015cffba80 100644 --- a/md/CL/97/CL_0002597.md +++ b/md/CL/97/CL_0002597.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1000397.md b/md/CL/97/CL_1000397.md index fd255f38f1..7dde171f2f 100644 --- a/md/CL/97/CL_1000397.md +++ b/md/CL/97/CL_1000397.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1000497.md b/md/CL/97/CL_1000497.md index b41a14bb79..18edd34721 100644 --- a/md/CL/97/CL_1000497.md +++ b/md/CL/97/CL_1000497.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1000597.md b/md/CL/97/CL_1000597.md index b48fcb8737..ca490c56fc 100644 --- a/md/CL/97/CL_1000597.md +++ b/md/CL/97/CL_1000597.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1000697.md b/md/CL/97/CL_1000697.md index 24e1af4653..dbb51c6c84 100644 --- a/md/CL/97/CL_1000697.md +++ b/md/CL/97/CL_1000697.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1001097.md b/md/CL/97/CL_1001097.md index 0ac154c49a..3eacb01b3b 100644 --- a/md/CL/97/CL_1001097.md +++ b/md/CL/97/CL_1001097.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/97/CL_1001597.md b/md/CL/97/CL_1001597.md index f2f9c96f56..6ff7fce017 100644 --- a/md/CL/97/CL_1001597.md +++ b/md/CL/97/CL_1001597.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000098.md b/md/CL/98/CL_0000098.md index 149e136e00..cf9e452c10 100644 --- a/md/CL/98/CL_0000098.md +++ b/md/CL/98/CL_0000098.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000198.md b/md/CL/98/CL_0000198.md index 26653e64c9..9ac8ae4d61 100644 --- a/md/CL/98/CL_0000198.md +++ b/md/CL/98/CL_0000198.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000398.md b/md/CL/98/CL_0000398.md index fde0752260..84a33ecf64 100644 --- a/md/CL/98/CL_0000398.md +++ b/md/CL/98/CL_0000398.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000498.md b/md/CL/98/CL_0000498.md index d20f282733..1d3279a726 100644 --- a/md/CL/98/CL_0000498.md +++ b/md/CL/98/CL_0000498.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000598.md b/md/CL/98/CL_0000598.md index 494edd7838..e4e608ae96 100644 --- a/md/CL/98/CL_0000598.md +++ b/md/CL/98/CL_0000598.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000798.md b/md/CL/98/CL_0000798.md index a8e56e9bbe..cc60622272 100644 --- a/md/CL/98/CL_0000798.md +++ b/md/CL/98/CL_0000798.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000898.md b/md/CL/98/CL_0000898.md index cc77245dcf..d5d7455b96 100644 --- a/md/CL/98/CL_0000898.md +++ b/md/CL/98/CL_0000898.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0000998.md b/md/CL/98/CL_0000998.md index 7c0dc2a923..54fbbe9977 100644 --- a/md/CL/98/CL_0000998.md +++ b/md/CL/98/CL_0000998.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002098.md b/md/CL/98/CL_0002098.md index b187b80c94..91bcf6eaf4 100644 --- a/md/CL/98/CL_0002098.md +++ b/md/CL/98/CL_0002098.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002198.md b/md/CL/98/CL_0002198.md index 8f733343de..7db413989f 100644 --- a/md/CL/98/CL_0002198.md +++ b/md/CL/98/CL_0002198.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002298.md b/md/CL/98/CL_0002298.md index f5d7b37d6e..e582e6443e 100644 --- a/md/CL/98/CL_0002298.md +++ b/md/CL/98/CL_0002298.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002398.md b/md/CL/98/CL_0002398.md index 58a50e737f..73aaad66e7 100644 --- a/md/CL/98/CL_0002398.md +++ b/md/CL/98/CL_0002398.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002498.md b/md/CL/98/CL_0002498.md index 8e399f7236..eb985c2cf6 100644 --- a/md/CL/98/CL_0002498.md +++ b/md/CL/98/CL_0002498.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_0002598.md b/md/CL/98/CL_0002598.md index ec002737db..aa2af4b356 100644 --- a/md/CL/98/CL_0002598.md +++ b/md/CL/98/CL_0002598.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_1000298.md b/md/CL/98/CL_1000298.md index 677c165039..08c4e3062f 100644 --- a/md/CL/98/CL_1000298.md +++ b/md/CL/98/CL_1000298.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_1000398.md b/md/CL/98/CL_1000398.md index 86c108352f..edc8359436 100644 --- a/md/CL/98/CL_1000398.md +++ b/md/CL/98/CL_1000398.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_1000698.md b/md/CL/98/CL_1000698.md index 34b79f02c9..7d9e9c5613 100644 --- a/md/CL/98/CL_1000698.md +++ b/md/CL/98/CL_1000698.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/98/CL_1001598.md b/md/CL/98/CL_1001598.md index e9171a28b4..fe1aa38037 100644 --- a/md/CL/98/CL_1001598.md +++ b/md/CL/98/CL_1001598.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000099.md b/md/CL/99/CL_0000099.md index 4e35e36cec..b7f0c55c6d 100644 --- a/md/CL/99/CL_0000099.md +++ b/md/CL/99/CL_0000099.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000199.md b/md/CL/99/CL_0000199.md index 7a48cde5cd..ae8b40d57c 100644 --- a/md/CL/99/CL_0000199.md +++ b/md/CL/99/CL_0000199.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000499.md b/md/CL/99/CL_0000499.md index c09bcb637a..fcd856a16c 100644 --- a/md/CL/99/CL_0000499.md +++ b/md/CL/99/CL_0000499.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000599.md b/md/CL/99/CL_0000599.md index ce89838c98..1d205bdb99 100644 --- a/md/CL/99/CL_0000599.md +++ b/md/CL/99/CL_0000599.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000699.md b/md/CL/99/CL_0000699.md index 501cb02f10..17904750f0 100644 --- a/md/CL/99/CL_0000699.md +++ b/md/CL/99/CL_0000699.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000799.md b/md/CL/99/CL_0000799.md index a405fa1ffb..90ba8cacbe 100644 --- a/md/CL/99/CL_0000799.md +++ b/md/CL/99/CL_0000799.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000899.md b/md/CL/99/CL_0000899.md index 1e3a86d3ae..a2dc6cd4b9 100644 --- a/md/CL/99/CL_0000899.md +++ b/md/CL/99/CL_0000899.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0000999.md b/md/CL/99/CL_0000999.md index bf403e98bb..fd9440a60f 100644 --- a/md/CL/99/CL_0000999.md +++ b/md/CL/99/CL_0000999.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002099.md b/md/CL/99/CL_0002099.md index c074cc86a6..292b359595 100644 --- a/md/CL/99/CL_0002099.md +++ b/md/CL/99/CL_0002099.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002199.md b/md/CL/99/CL_0002199.md index a7fbe047a5..cc6e339e2b 100644 --- a/md/CL/99/CL_0002199.md +++ b/md/CL/99/CL_0002199.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002299.md b/md/CL/99/CL_0002299.md index 518be11a7b..5af45243a2 100644 --- a/md/CL/99/CL_0002299.md +++ b/md/CL/99/CL_0002299.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002399.md b/md/CL/99/CL_0002399.md index 853eb4b800..333434480f 100644 --- a/md/CL/99/CL_0002399.md +++ b/md/CL/99/CL_0002399.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002499.md b/md/CL/99/CL_0002499.md index 5c9876dae6..704cac07cb 100644 --- a/md/CL/99/CL_0002499.md +++ b/md/CL/99/CL_0002499.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_0002599.md b/md/CL/99/CL_0002599.md index 903853b367..551978ad6b 100644 --- a/md/CL/99/CL_0002599.md +++ b/md/CL/99/CL_0002599.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_1000299.md b/md/CL/99/CL_1000299.md index 7e4ef115d1..4e737b811b 100644 --- a/md/CL/99/CL_1000299.md +++ b/md/CL/99/CL_1000299.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_1000699.md b/md/CL/99/CL_1000699.md index 7c5709441a..6920caa534 100644 --- a/md/CL/99/CL_1000699.md +++ b/md/CL/99/CL_1000699.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_1001099.md b/md/CL/99/CL_1001099.md index 9d441cf7c8..325872e593 100644 --- a/md/CL/99/CL_1001099.md +++ b/md/CL/99/CL_1001099.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/CL/99/CL_1001599.md b/md/CL/99/CL_1001599.md index c14b918594..e97b1c5472 100644 --- a/md/CL/99/CL_1001599.md +++ b/md/CL/99/CL_1001599.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/28/ENVO_00000428.md b/md/ENVO/28/ENVO_00000428.md index 75c2ee3419..e9fe1070b4 100644 --- a/md/ENVO/28/ENVO_00000428.md +++ b/md/ENVO/28/ENVO_00000428.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/30/ENVO_00002030.md b/md/ENVO/30/ENVO_00002030.md index dbb86ca125..b972a909a5 100644 --- a/md/ENVO/30/ENVO_00002030.md +++ b/md/ENVO/30/ENVO_00002030.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/36/ENVO_00002036.md b/md/ENVO/36/ENVO_00002036.md index 0a6f270157..f80c639bd3 100644 --- a/md/ENVO/36/ENVO_00002036.md +++ b/md/ENVO/36/ENVO_00002036.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/46/ENVO_00000446.md b/md/ENVO/46/ENVO_00000446.md index d50d530af8..8c843c8716 100644 --- a/md/ENVO/46/ENVO_00000446.md +++ b/md/ENVO/46/ENVO_00000446.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/47/ENVO_00000447.md b/md/ENVO/47/ENVO_00000447.md index 36fee15ee2..06010ddb71 100644 --- a/md/ENVO/47/ENVO_00000447.md +++ b/md/ENVO/47/ENVO_00000447.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/54/ENVO_01000254.md b/md/ENVO/54/ENVO_01000254.md index ce9753a3cb..33b36d36d6 100644 --- a/md/ENVO/54/ENVO_01000254.md +++ b/md/ENVO/54/ENVO_01000254.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/68/ENVO_00000568.md b/md/ENVO/68/ENVO_00000568.md index d8023fb889..0eb770d88a 100644 --- a/md/ENVO/68/ENVO_00000568.md +++ b/md/ENVO/68/ENVO_00000568.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ENVO/72/ENVO_00000572.md b/md/ENVO/72/ENVO_00000572.md index 1a4e9393ac..70769caa14 100644 --- a/md/ENVO/72/ENVO_00000572.md +++ b/md/ENVO/72/ENVO_00000572.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/FBbt/23/FBbt_00000123.md b/md/FBbt/23/FBbt_00000123.md index 28c454a1fd..15d4570cbd 100644 --- a/md/FBbt/23/FBbt_00000123.md +++ b/md/FBbt/23/FBbt_00000123.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0007600.md b/md/GO/00/GO_0007600.md index 3da69e08af..231c27c54d 100644 --- a/md/GO/00/GO_0007600.md +++ b/md/GO/00/GO_0007600.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0010700.md b/md/GO/00/GO_0010700.md index 8ccb1f7527..bdf2f1d2d6 100644 --- a/md/GO/00/GO_0010700.md +++ b/md/GO/00/GO_0010700.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [norepinephrine secretion](../../GO/43/GO_0048243.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0022600.md b/md/GO/00/GO_0022600.md index 1cc5554b35..9087c6dc36 100644 --- a/md/GO/00/GO_0022600.md +++ b/md/GO/00/GO_0022600.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digestion](../../GO/86/GO_0007586.md) and [system process](../../GO/08/GO_0003008.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0030500.md b/md/GO/00/GO_0030500.md index ec76ee9564..d806ae7cba 100644 --- a/md/GO/00/GO_0030500.md +++ b/md/GO/00/GO_0030500.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [bone mineralization](../../GO/82/GO_0030282.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0042100.md b/md/GO/00/GO_0042100.md index f6c5b42d64..7af971f5bc 100644 --- a/md/GO/00/GO_0042100.md +++ b/md/GO/00/GO_0042100.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0043900.md b/md/GO/00/GO_0043900.md index 8a031f1a97..cb80328227 100644 --- a/md/GO/00/GO_0043900.md +++ b/md/GO/00/GO_0043900.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [multi-organism process](../../GO/04/GO_0051704.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_0044700.md b/md/GO/00/GO_0044700.md index 1c594812fe..1d873a4611 100644 --- a/md/GO/00/GO_0044700.md +++ b/md/GO/00/GO_0044700.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/00/GO_1901700.md b/md/GO/00/GO_1901700.md index d3dd2e55fb..b2d68d2e77 100644 --- a/md/GO/00/GO_1901700.md +++ b/md/GO/00/GO_1901700.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0001501.md b/md/GO/01/GO_0001501.md index fa0d570cea..b417f626a8 100644 --- a/md/GO/01/GO_0001501.md +++ b/md/GO/01/GO_0001501.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0003001.md b/md/GO/01/GO_0003001.md index 7d6f12ad4f..01c5f2552b 100644 --- a/md/GO/01/GO_0003001.md +++ b/md/GO/01/GO_0003001.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0007601.md b/md/GO/01/GO_0007601.md index 428e0ea890..8a5dd66af0 100644 --- a/md/GO/01/GO_0007601.md +++ b/md/GO/01/GO_0007601.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0032101.md b/md/GO/01/GO_0032101.md index 79548e3672..9c6a30dee6 100644 --- a/md/GO/01/GO_0032101.md +++ b/md/GO/01/GO_0032101.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [response to external stimulus](../../GO/05/GO_0009605.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0032501.md b/md/GO/01/GO_0032501.md index f5f9686fcd..9c55cfcf43 100644 --- a/md/GO/01/GO_0032501.md +++ b/md/GO/01/GO_0032501.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0042701.md b/md/GO/01/GO_0042701.md index b7e08f1d64..f5149e7cbf 100644 --- a/md/GO/01/GO_0042701.md +++ b/md/GO/01/GO_0042701.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0043901.md b/md/GO/01/GO_0043901.md index 27b3050362..febab8a9f8 100644 --- a/md/GO/01/GO_0043901.md +++ b/md/GO/01/GO_0043901.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [multi-organism process](../../GO/04/GO_0051704.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0050801.md b/md/GO/01/GO_0050801.md index 7d2e11a211..4388a64e97 100644 --- a/md/GO/01/GO_0050801.md +++ b/md/GO/01/GO_0050801.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0051301.md b/md/GO/01/GO_0051301.md index 52a637449e..7540657881 100644 --- a/md/GO/01/GO_0051301.md +++ b/md/GO/01/GO_0051301.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/01/GO_0072201.md b/md/GO/01/GO_0072201.md index a23ec5965e..15752e59b6 100644 --- a/md/GO/01/GO_0072201.md +++ b/md/GO/01/GO_0072201.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [mesenchymal cell proliferation](../../GO/63/GO_0010463.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0005902.md b/md/GO/02/GO_0005902.md index dfb973fe3b..09bca93a98 100644 --- a/md/GO/02/GO_0005902.md +++ b/md/GO/02/GO_0005902.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0008202.md b/md/GO/02/GO_0008202.md index db0dde4130..9ace0feae0 100644 --- a/md/GO/02/GO_0008202.md +++ b/md/GO/02/GO_0008202.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0022402.md b/md/GO/02/GO_0022402.md index 3205eb915d..09b44ac127 100644 --- a/md/GO/02/GO_0022402.md +++ b/md/GO/02/GO_0022402.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cell cycle](../../GO/49/GO_0007049.md) and [single-organism cellular process](../../GO/63/GO_0044763.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0022602.md b/md/GO/02/GO_0022602.md index 93f35ca640..b3fb22bd8e 100644 --- a/md/GO/02/GO_0022602.md +++ b/md/GO/02/GO_0022602.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0030502.md b/md/GO/02/GO_0030502.md index ba7b418bf5..9803964395 100644 --- a/md/GO/02/GO_0030502.md +++ b/md/GO/02/GO_0030502.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [bone mineralization](../../GO/82/GO_0030282.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0032102.md b/md/GO/02/GO_0032102.md index 204b0a9bbd..62fe63cce8 100644 --- a/md/GO/02/GO_0032102.md +++ b/md/GO/02/GO_0032102.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [response to external stimulus](../../GO/05/GO_0009605.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0032502.md b/md/GO/02/GO_0032502.md index 832e1d14ac..8c85412197 100644 --- a/md/GO/02/GO_0032502.md +++ b/md/GO/02/GO_0032502.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0044702.md b/md/GO/02/GO_0044702.md index f101de4208..f15c844fe3 100644 --- a/md/GO/02/GO_0044702.md +++ b/md/GO/02/GO_0044702.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0050802.md b/md/GO/02/GO_0050802.md index 1c55d739a0..ab3cfbdf1a 100644 --- a/md/GO/02/GO_0050802.md +++ b/md/GO/02/GO_0050802.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [circadian sleep/wake cycle](../../GO/45/GO_0042745.md) and [sleep](../../GO/31/GO_0030431.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0051302.md b/md/GO/02/GO_0051302.md index ac0244840e..19164636c9 100644 --- a/md/GO/02/GO_0051302.md +++ b/md/GO/02/GO_0051302.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell division](../../GO/01/GO_0051301.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0051602.md b/md/GO/02/GO_0051602.md index dd9d0636dd..a32067c4eb 100644 --- a/md/GO/02/GO_0051602.md +++ b/md/GO/02/GO_0051602.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/02/GO_0071702.md b/md/GO/02/GO_0071702.md index 69fcb55b70..e6b16902c5 100644 --- a/md/GO/02/GO_0071702.md +++ b/md/GO/02/GO_0071702.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0000003.md b/md/GO/03/GO_0000003.md index 70cdb4a3c8..41077983af 100644 --- a/md/GO/03/GO_0000003.md +++ b/md/GO/03/GO_0000003.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0001503.md b/md/GO/03/GO_0001503.md index b7868cfb09..6a6ea15a32 100644 --- a/md/GO/03/GO_0001503.md +++ b/md/GO/03/GO_0001503.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0008003.md b/md/GO/03/GO_0008003.md index c85350c0ac..d76e66b273 100644 --- a/md/GO/03/GO_0008003.md +++ b/md/GO/03/GO_0008003.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0022603.md b/md/GO/03/GO_0022603.md index 9771843fb3..2e9f3abbc7 100644 --- a/md/GO/03/GO_0022603.md +++ b/md/GO/03/GO_0022603.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [anatomical structure morphogenesis](../../GO/53/GO_0009653.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0030103.md b/md/GO/03/GO_0030103.md index 2df0cd1f2b..eb62a784bf 100644 --- a/md/GO/03/GO_0030103.md +++ b/md/GO/03/GO_0030103.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0030203.md b/md/GO/03/GO_0030203.md index 8ba0e7c919..16842df801 100644 --- a/md/GO/03/GO_0030203.md +++ b/md/GO/03/GO_0030203.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0042403.md b/md/GO/03/GO_0042403.md index 1708150311..99c5aeb86c 100644 --- a/md/GO/03/GO_0042403.md +++ b/md/GO/03/GO_0042403.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0044703.md b/md/GO/03/GO_0044703.md index fc5e8277ec..29ccae7bf8 100644 --- a/md/GO/03/GO_0044703.md +++ b/md/GO/03/GO_0044703.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0046903.md b/md/GO/03/GO_0046903.md index 938f5f6c71..9eb956ab19 100644 --- a/md/GO/03/GO_0046903.md +++ b/md/GO/03/GO_0046903.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/03/GO_0086103.md b/md/GO/03/GO_0086103.md index dc6563b31c..9985b31d5c 100644 --- a/md/GO/03/GO_0086103.md +++ b/md/GO/03/GO_0086103.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [G-protein coupled receptor signaling pathway](../../GO/86/GO_0007186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart process](../../GO/15/GO_0003015.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0005604.md b/md/GO/04/GO_0005604.md index 7316020e2e..5d144afa99 100644 --- a/md/GO/04/GO_0005604.md +++ b/md/GO/04/GO_0005604.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0006704.md b/md/GO/04/GO_0006704.md index 6fc031cbf0..56600967cd 100644 --- a/md/GO/04/GO_0006704.md +++ b/md/GO/04/GO_0006704.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0008004.md b/md/GO/04/GO_0008004.md index b219abfe98..5cf780fd26 100644 --- a/md/GO/04/GO_0008004.md +++ b/md/GO/04/GO_0008004.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0030104.md b/md/GO/04/GO_0030104.md index d1bab870e5..b1bc9bfbb7 100644 --- a/md/GO/04/GO_0030104.md +++ b/md/GO/04/GO_0030104.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0032504.md b/md/GO/04/GO_0032504.md index 4ff2be58cd..fb5cfcd8b2 100644 --- a/md/GO/04/GO_0032504.md +++ b/md/GO/04/GO_0032504.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0033604.md b/md/GO/04/GO_0033604.md index 47b2edeaed..27b7b4c138 100644 --- a/md/GO/04/GO_0033604.md +++ b/md/GO/04/GO_0033604.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [catecholamine secretion](../../GO/32/GO_0050432.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0044704.md b/md/GO/04/GO_0044704.md index e212d1a745..cbf29c3947 100644 --- a/md/GO/04/GO_0044704.md +++ b/md/GO/04/GO_0044704.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0045604.md b/md/GO/04/GO_0045604.md index 14275bb212..975f55ca26 100644 --- a/md/GO/04/GO_0045604.md +++ b/md/GO/04/GO_0045604.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [epidermal cell differentiation](../../GO/13/GO_0009913.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0051704.md b/md/GO/04/GO_0051704.md index 6fc11bc214..85d18920ff 100644 --- a/md/GO/04/GO_0051704.md +++ b/md/GO/04/GO_0051704.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0060004.md b/md/GO/04/GO_0060004.md index 03aafb2cfa..e272cb37f4 100644 --- a/md/GO/04/GO_0060004.md +++ b/md/GO/04/GO_0060004.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/04/GO_0071704.md b/md/GO/04/GO_0071704.md index 52c643c4a3..fc945cf5ab 100644 --- a/md/GO/04/GO_0071704.md +++ b/md/GO/04/GO_0071704.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0003105.md b/md/GO/05/GO_0003105.md index bdc3d170b9..a0aba6a0c1 100644 --- a/md/GO/05/GO_0003105.md +++ b/md/GO/05/GO_0003105.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [glomerular filtration](../../GO/94/GO_0003094.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0005605.md b/md/GO/05/GO_0005605.md index 6c496d2dc8..6cf1b1c078 100644 --- a/md/GO/05/GO_0005605.md +++ b/md/GO/05/GO_0005605.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0006705.md b/md/GO/05/GO_0006705.md index be093adea1..9fc41f9ae6 100644 --- a/md/GO/05/GO_0006705.md +++ b/md/GO/05/GO_0006705.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0007605.md b/md/GO/05/GO_0007605.md index 99cf685bd9..8129a0c695 100644 --- a/md/GO/05/GO_0007605.md +++ b/md/GO/05/GO_0007605.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0009605.md b/md/GO/05/GO_0009605.md index 471705683f..f238430cc9 100644 --- a/md/GO/05/GO_0009605.md +++ b/md/GO/05/GO_0009605.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0010605.md b/md/GO/05/GO_0010605.md index 17e1e57a17..ac54f7eefc 100644 --- a/md/GO/05/GO_0010605.md +++ b/md/GO/05/GO_0010605.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [macromolecule metabolic process](../../GO/70/GO_0043170.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0043005.md b/md/GO/05/GO_0043005.md index ec28dcb0e6..c793bc31de 100644 --- a/md/GO/05/GO_0043005.md +++ b/md/GO/05/GO_0043005.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0045605.md b/md/GO/05/GO_0045605.md index dba8508f9a..db5e08b9e0 100644 --- a/md/GO/05/GO_0045605.md +++ b/md/GO/05/GO_0045605.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [epidermal cell differentiation](../../GO/13/GO_0009913.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0048705.md b/md/GO/05/GO_0048705.md index 0c0309366b..70d899b622 100644 --- a/md/GO/05/GO_0048705.md +++ b/md/GO/05/GO_0048705.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0050905.md b/md/GO/05/GO_0050905.md index addebc5208..35f6caad52 100644 --- a/md/GO/05/GO_0050905.md +++ b/md/GO/05/GO_0050905.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0060005.md b/md/GO/05/GO_0060005.md index 2fd80d874b..191b32f117 100644 --- a/md/GO/05/GO_0060005.md +++ b/md/GO/05/GO_0060005.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0060405.md b/md/GO/05/GO_0060405.md index a51c821afd..186fa09a6f 100644 --- a/md/GO/05/GO_0060405.md +++ b/md/GO/05/GO_0060405.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [penile erection](../../GO/84/GO_0043084.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0071705.md b/md/GO/05/GO_0071705.md index 56041799b4..8089e4b4a3 100644 --- a/md/GO/05/GO_0071705.md +++ b/md/GO/05/GO_0071705.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_0097205.md b/md/GO/05/GO_0097205.md index 30469ef024..3618f53285 100644 --- a/md/GO/05/GO_0097205.md +++ b/md/GO/05/GO_0097205.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/05/GO_1902105.md b/md/GO/05/GO_1902105.md index 06842dd8df..cc0c337142 100644 --- a/md/GO/05/GO_1902105.md +++ b/md/GO/05/GO_1902105.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [leukocyte differentiation](../../GO/21/GO_0002521.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0003006.md b/md/GO/06/GO_0003006.md index 5c0c6a36e3..686dd7b386 100644 --- a/md/GO/06/GO_0003006.md +++ b/md/GO/06/GO_0003006.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developmental process](../../GO/02/GO_0032502.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reproduction](../../GO/03/GO_0000003.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0007606.md b/md/GO/06/GO_0007606.md index d5c79edb12..ed0de15ada 100644 --- a/md/GO/06/GO_0007606.md +++ b/md/GO/06/GO_0007606.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0008306.md b/md/GO/06/GO_0008306.md index d3c5858d1a..b86f040860 100644 --- a/md/GO/06/GO_0008306.md +++ b/md/GO/06/GO_0008306.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0008406.md b/md/GO/06/GO_0008406.md index 2b7194d4ab..021176a23b 100644 --- a/md/GO/06/GO_0008406.md +++ b/md/GO/06/GO_0008406.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0021506.md b/md/GO/06/GO_0021506.md new file mode 100644 index 0000000000..d851ec9332 --- /dev/null +++ b/md/GO/06/GO_0021506.md @@ -0,0 +1,31 @@ + +## Class : null + + * *IRI* = http://purl.obolibrary.org/obo/GO_0021506 + +## Synonyms + + +## Cross-references + + +## Subsets + + +## Superclasses + + +## Equivalencies + + +## Other Logical Axioms + + +## Other Annotations + + +## Usage + + +## External Comments + diff --git a/md/GO/06/GO_0044106.md b/md/GO/06/GO_0044106.md index 94995b88fe..13882e166f 100644 --- a/md/GO/06/GO_0044106.md +++ b/md/GO/06/GO_0044106.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0044706.md b/md/GO/06/GO_0044706.md index 76898a705f..5b2f969773 100644 --- a/md/GO/06/GO_0044706.md +++ b/md/GO/06/GO_0044706.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0050906.md b/md/GO/06/GO_0050906.md index c0f646095d..3effdbb2bb 100644 --- a/md/GO/06/GO_0050906.md +++ b/md/GO/06/GO_0050906.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of stimulus](../../GO/06/GO_0051606.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_0051606.md b/md/GO/06/GO_0051606.md index 97c15551b0..11bf09d14f 100644 --- a/md/GO/06/GO_0051606.md +++ b/md/GO/06/GO_0051606.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/06/GO_1902106.md b/md/GO/06/GO_1902106.md index 27de82f67a..1c8713b139 100644 --- a/md/GO/06/GO_1902106.md +++ b/md/GO/06/GO_1902106.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [leukocyte differentiation](../../GO/21/GO_0002521.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0006807.md b/md/GO/07/GO_0006807.md index fa1edce285..56e6a90614 100644 --- a/md/GO/07/GO_0006807.md +++ b/md/GO/07/GO_0006807.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0040007.md b/md/GO/07/GO_0040007.md index 12c16d7aad..68bff564a8 100644 --- a/md/GO/07/GO_0040007.md +++ b/md/GO/07/GO_0040007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0044707.md b/md/GO/07/GO_0044707.md index 746e8e2449..4023507be2 100644 --- a/md/GO/07/GO_0044707.md +++ b/md/GO/07/GO_0044707.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0046907.md b/md/GO/07/GO_0046907.md index 1aea608365..6873b74340 100644 --- a/md/GO/07/GO_0046907.md +++ b/md/GO/07/GO_0046907.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occurs in](../../BFO/66/BFO_0000066.md) some [intracellular](../../GO/22/GO_0005622.md) and [transport](../../GO/10/GO_0006810.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0050907.md b/md/GO/07/GO_0050907.md index af45e05412..ecbbf8c444 100644 --- a/md/GO/07/GO_0050907.md +++ b/md/GO/07/GO_0050907.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of chemical stimulus](../../GO/93/GO_0009593.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0060007.md b/md/GO/07/GO_0060007.md index 3fa452e8ac..a510250f73 100644 --- a/md/GO/07/GO_0060007.md +++ b/md/GO/07/GO_0060007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0060407.md b/md/GO/07/GO_0060407.md index de52f2e8c0..0c10676e5d 100644 --- a/md/GO/07/GO_0060407.md +++ b/md/GO/07/GO_0060407.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [penile erection](../../GO/84/GO_0043084.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0065007.md b/md/GO/07/GO_0065007.md index eb374f632e..b739c1bf09 100644 --- a/md/GO/07/GO_0065007.md +++ b/md/GO/07/GO_0065007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/07/GO_0072507.md b/md/GO/07/GO_0072507.md index dde64d9fe3..e1527e8a35 100644 --- a/md/GO/07/GO_0072507.md +++ b/md/GO/07/GO_0072507.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0003008.md b/md/GO/08/GO_0003008.md index 1599b144c2..7670f0ef76 100644 --- a/md/GO/08/GO_0003008.md +++ b/md/GO/08/GO_0003008.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0007608.md b/md/GO/08/GO_0007608.md index a3ce6974bb..2e5bfcf20e 100644 --- a/md/GO/08/GO_0007608.md +++ b/md/GO/08/GO_0007608.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0009308.md b/md/GO/08/GO_0009308.md index b83d203c7c..39b9945f15 100644 --- a/md/GO/08/GO_0009308.md +++ b/md/GO/08/GO_0009308.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0022008.md b/md/GO/08/GO_0022008.md index 4f9a45349f..f7307bbfb7 100644 --- a/md/GO/08/GO_0022008.md +++ b/md/GO/08/GO_0022008.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0030308.md b/md/GO/08/GO_0030308.md index 6a3c0e2981..43d47d856c 100644 --- a/md/GO/08/GO_0030308.md +++ b/md/GO/08/GO_0030308.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell growth](../../GO/49/GO_0016049.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0040008.md b/md/GO/08/GO_0040008.md index ab121a6e0c..e53b888ef7 100644 --- a/md/GO/08/GO_0040008.md +++ b/md/GO/08/GO_0040008.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [growth](../../GO/07/GO_0040007.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0044708.md b/md/GO/08/GO_0044708.md index 1c6236db76..917e56055c 100644 --- a/md/GO/08/GO_0044708.md +++ b/md/GO/08/GO_0044708.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0048608.md b/md/GO/08/GO_0048608.md index 72bf8791bb..12ce958e0b 100644 --- a/md/GO/08/GO_0048608.md +++ b/md/GO/08/GO_0048608.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0050908.md b/md/GO/08/GO_0050908.md index 2fb8ffa9e2..cfda041224 100644 --- a/md/GO/08/GO_0050908.md +++ b/md/GO/08/GO_0050908.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of light stimulus](../../GO/83/GO_0009583.md) and [part_of](../../BFO/50/BFO_0000050.md) some [visual perception](../../GO/01/GO_0007601.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/08/GO_0065008.md b/md/GO/08/GO_0065008.md index 7ee5ba8475..0556b2c27a 100644 --- a/md/GO/08/GO_0065008.md +++ b/md/GO/08/GO_0065008.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0002009.md b/md/GO/09/GO_0002009.md index e93e3a3eb3..c1cc0eddf0 100644 --- a/md/GO/09/GO_0002009.md +++ b/md/GO/09/GO_0002009.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0035209.md b/md/GO/09/GO_0035209.md index f94fc76485..1a34258a9f 100644 --- a/md/GO/09/GO_0035209.md +++ b/md/GO/09/GO_0035209.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0043009.md b/md/GO/09/GO_0043009.md index 9c89a2eac3..8ae42c93b6 100644 --- a/md/GO/09/GO_0043009.md +++ b/md/GO/09/GO_0043009.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0043209.md b/md/GO/09/GO_0043209.md index 973f6838cd..82a7052d13 100644 --- a/md/GO/09/GO_0043209.md +++ b/md/GO/09/GO_0043209.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0048609.md b/md/GO/09/GO_0048609.md index 44a7b7c99a..7c197281e1 100644 --- a/md/GO/09/GO_0048609.md +++ b/md/GO/09/GO_0048609.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0050909.md b/md/GO/09/GO_0050909.md index f5bfda87c7..9e87ae60bb 100644 --- a/md/GO/09/GO_0050909.md +++ b/md/GO/09/GO_0050909.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0060209.md b/md/GO/09/GO_0060209.md index 777a71b8d4..de7d536193 100644 --- a/md/GO/09/GO_0060209.md +++ b/md/GO/09/GO_0060209.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_0065009.md b/md/GO/09/GO_0065009.md index a3ac9dc456..b392e17c29 100644 --- a/md/GO/09/GO_0065009.md +++ b/md/GO/09/GO_0065009.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [molecular_function](../../GO/74/GO_0003674.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/09/GO_2000609.md b/md/GO/09/GO_2000609.md index 2aa15cf9c5..c63c16881d 100644 --- a/md/GO/09/GO_2000609.md +++ b/md/GO/09/GO_2000609.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [thyroid hormone generation](../../GO/90/GO_0006590.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0006810.md b/md/GO/10/GO_0006810.md index 0131f64811..7cc25679f6 100644 --- a/md/GO/10/GO_0006810.md +++ b/md/GO/10/GO_0006810.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0007610.md b/md/GO/10/GO_0007610.md index 96fa614d78..adf1273214 100644 --- a/md/GO/10/GO_0007610.md +++ b/md/GO/10/GO_0007610.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0008610.md b/md/GO/10/GO_0008610.md index 2aa09130b4..8698d4d05d 100644 --- a/md/GO/10/GO_0008610.md +++ b/md/GO/10/GO_0008610.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0022410.md b/md/GO/10/GO_0022410.md index 4a57788045..a5e641c91f 100644 --- a/md/GO/10/GO_0022410.md +++ b/md/GO/10/GO_0022410.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0031410.md b/md/GO/10/GO_0031410.md index bc2cd411bb..4ba0aeaa3f 100644 --- a/md/GO/10/GO_0031410.md +++ b/md/GO/10/GO_0031410.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cytoplasm](../../GO/37/GO_0005737.md) and [vesicle](../../GO/82/GO_0031982.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0042110.md b/md/GO/10/GO_0042110.md index a41d650147..5b85aa927a 100644 --- a/md/GO/10/GO_0042110.md +++ b/md/GO/10/GO_0042110.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0044710.md b/md/GO/10/GO_0044710.md index b8f808026c..35b2fe6284 100644 --- a/md/GO/10/GO_0044710.md +++ b/md/GO/10/GO_0044710.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0048610.md b/md/GO/10/GO_0048610.md index 3ccbaf1d68..5872c0988d 100644 --- a/md/GO/10/GO_0048610.md +++ b/md/GO/10/GO_0048610.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular process](../../GO/87/GO_0009987.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reproduction](../../GO/03/GO_0000003.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0050810.md b/md/GO/10/GO_0050810.md index a27faf92a3..32c32dd708 100644 --- a/md/GO/10/GO_0050810.md +++ b/md/GO/10/GO_0050810.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [steroid biosynthetic process](../../GO/94/GO_0006694.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_0050910.md b/md/GO/10/GO_0050910.md index 2a47e4693a..d4471c1f9a 100644 --- a/md/GO/10/GO_0050910.md +++ b/md/GO/10/GO_0050910.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of mechanical stimulus](../../GO/82/GO_0050982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of sound](../../GO/05/GO_0007605.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/10/GO_2000610.md b/md/GO/10/GO_2000610.md index c59c4994c1..ffbd7285b7 100644 --- a/md/GO/10/GO_2000610.md +++ b/md/GO/10/GO_2000610.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [thyroid hormone generation](../../GO/90/GO_0006590.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0005911.md b/md/GO/11/GO_0005911.md index 9bf1955abf..a1372c4cb3 100644 --- a/md/GO/11/GO_0005911.md +++ b/md/GO/11/GO_0005911.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0006811.md b/md/GO/11/GO_0006811.md index 58fd851afa..3272226112 100644 --- a/md/GO/11/GO_0006811.md +++ b/md/GO/11/GO_0006811.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0007611.md b/md/GO/11/GO_0007611.md index b942cc536d..480c260f66 100644 --- a/md/GO/11/GO_0007611.md +++ b/md/GO/11/GO_0007611.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0008211.md b/md/GO/11/GO_0008211.md index f349af44fe..836d7411c3 100644 --- a/md/GO/11/GO_0008211.md +++ b/md/GO/11/GO_0008211.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0009611.md b/md/GO/11/GO_0009611.md index c66f925224..86898ada23 100644 --- a/md/GO/11/GO_0009611.md +++ b/md/GO/11/GO_0009611.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0040011.md b/md/GO/11/GO_0040011.md index d91aac26a6..9ebae5eb61 100644 --- a/md/GO/11/GO_0040011.md +++ b/md/GO/11/GO_0040011.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0045111.md b/md/GO/11/GO_0045111.md index 1c22059ec8..1428f4aa67 100644 --- a/md/GO/11/GO_0045111.md +++ b/md/GO/11/GO_0045111.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0048511.md b/md/GO/11/GO_0048511.md index 1e21408599..df1bfa8e36 100644 --- a/md/GO/11/GO_0048511.md +++ b/md/GO/11/GO_0048511.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/11/GO_0050911.md b/md/GO/11/GO_0050911.md index 769b31258d..fc940e6a44 100644 --- a/md/GO/11/GO_0050911.md +++ b/md/GO/11/GO_0050911.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of chemical stimulus](../../GO/93/GO_0009593.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of smell](../../GO/08/GO_0007608.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0002312.md b/md/GO/12/GO_0002312.md index 3db15c39af..6daca1765b 100644 --- a/md/GO/12/GO_0002312.md +++ b/md/GO/12/GO_0002312.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [B cell activation](../../GO/13/GO_0042113.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0003012.md b/md/GO/12/GO_0003012.md index 760175a0d1..3819907b52 100644 --- a/md/GO/12/GO_0003012.md +++ b/md/GO/12/GO_0003012.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0006812.md b/md/GO/12/GO_0006812.md index 52e6d37072..923bbbaa8a 100644 --- a/md/GO/12/GO_0006812.md +++ b/md/GO/12/GO_0006812.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0007612.md b/md/GO/12/GO_0007612.md index 624537163f..246f8db8c6 100644 --- a/md/GO/12/GO_0007612.md +++ b/md/GO/12/GO_0007612.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0008212.md b/md/GO/12/GO_0008212.md index 3e6d25c20e..04b0bb8dfd 100644 --- a/md/GO/12/GO_0008212.md +++ b/md/GO/12/GO_0008212.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0009612.md b/md/GO/12/GO_0009612.md index 3d38ba7e43..d5721f7b6a 100644 --- a/md/GO/12/GO_0009612.md +++ b/md/GO/12/GO_0009612.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0022412.md b/md/GO/12/GO_0022412.md index 3471294b82..1729d7589f 100644 --- a/md/GO/12/GO_0022412.md +++ b/md/GO/12/GO_0022412.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [multicellular organism reproduction](../../GO/04/GO_0032504.md) and [single-organism cellular process](../../GO/63/GO_0044763.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0031012.md b/md/GO/12/GO_0031012.md index 9f23b56c39..e48966e639 100644 --- a/md/GO/12/GO_0031012.md +++ b/md/GO/12/GO_0031012.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0040012.md b/md/GO/12/GO_0040012.md index 19b61ef01b..50d8ffac29 100644 --- a/md/GO/12/GO_0040012.md +++ b/md/GO/12/GO_0040012.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [locomotion](../../GO/11/GO_0040011.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0048512.md b/md/GO/12/GO_0048512.md index a4f1fef4a2..6385e15dbb 100644 --- a/md/GO/12/GO_0048512.md +++ b/md/GO/12/GO_0048512.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/12/GO_0050912.md b/md/GO/12/GO_0050912.md index c565144e98..11faee9e43 100644 --- a/md/GO/12/GO_0050912.md +++ b/md/GO/12/GO_0050912.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of chemical stimulus](../../GO/93/GO_0009593.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of taste](../../GO/09/GO_0050909.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0002313.md b/md/GO/13/GO_0002313.md index 8f9cc0f4fc..8c38ca412d 100644 --- a/md/GO/13/GO_0002313.md +++ b/md/GO/13/GO_0002313.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mature B cell differentiation](../../GO/35/GO_0002335.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0003013.md b/md/GO/13/GO_0003013.md index e094f7f95b..107e1a27be 100644 --- a/md/GO/13/GO_0003013.md +++ b/md/GO/13/GO_0003013.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0003413.md b/md/GO/13/GO_0003413.md index cdf79b2b79..855bfcc21e 100644 --- a/md/GO/13/GO_0003413.md +++ b/md/GO/13/GO_0003413.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [chondrocyte differentiation](../../GO/62/GO_0002062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endochondral bone morphogenesis](../../GO/50/GO_0060350.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0007613.md b/md/GO/13/GO_0007613.md index 0312af9ccf..22d1f330da 100644 --- a/md/GO/13/GO_0007613.md +++ b/md/GO/13/GO_0007613.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0009913.md b/md/GO/13/GO_0009913.md index b042ad75c6..bafea28192 100644 --- a/md/GO/13/GO_0009913.md +++ b/md/GO/13/GO_0009913.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0031513.md b/md/GO/13/GO_0031513.md index 3885d7f597..37b8b98487 100644 --- a/md/GO/13/GO_0031513.md +++ b/md/GO/13/GO_0031513.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0040013.md b/md/GO/13/GO_0040013.md index 2259f8ad41..c9956b1101 100644 --- a/md/GO/13/GO_0040013.md +++ b/md/GO/13/GO_0040013.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [locomotion](../../GO/11/GO_0040011.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0042113.md b/md/GO/13/GO_0042113.md index 30335ba773..9754d537a2 100644 --- a/md/GO/13/GO_0042113.md +++ b/md/GO/13/GO_0042113.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0042713.md b/md/GO/13/GO_0042713.md index 15f4a729f5..72961abfda 100644 --- a/md/GO/13/GO_0042713.md +++ b/md/GO/13/GO_0042713.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/13/GO_0048513.md b/md/GO/13/GO_0048513.md index 6c08ff04b2..8640e604d9 100644 --- a/md/GO/13/GO_0048513.md +++ b/md/GO/13/GO_0048513.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0003014.md b/md/GO/14/GO_0003014.md index 91eec37ca7..291df18ed9 100644 --- a/md/GO/14/GO_0003014.md +++ b/md/GO/14/GO_0003014.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0009314.md b/md/GO/14/GO_0009314.md index 316c2a8943..0caf0dd7b8 100644 --- a/md/GO/14/GO_0009314.md +++ b/md/GO/14/GO_0009314.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0009414.md b/md/GO/14/GO_0009414.md index 3ebf762945..fc39f06111 100644 --- a/md/GO/14/GO_0009414.md +++ b/md/GO/14/GO_0009414.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0009914.md b/md/GO/14/GO_0009914.md index ebb4af8fed..ec72707ad8 100644 --- a/md/GO/14/GO_0009914.md +++ b/md/GO/14/GO_0009914.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0022414.md b/md/GO/14/GO_0022414.md index 49bc9685c3..11ce093990 100644 --- a/md/GO/14/GO_0022414.md +++ b/md/GO/14/GO_0022414.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0031214.md b/md/GO/14/GO_0031214.md index b2e872923c..1b2963ab87 100644 --- a/md/GO/14/GO_0031214.md +++ b/md/GO/14/GO_0031214.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0031514.md b/md/GO/14/GO_0031514.md index 3a3a35bb0a..5b487e50af 100644 --- a/md/GO/14/GO_0031514.md +++ b/md/GO/14/GO_0031514.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0048514.md b/md/GO/14/GO_0048514.md index b7709d35a5..c12423442f 100644 --- a/md/GO/14/GO_0048514.md +++ b/md/GO/14/GO_0048514.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/14/GO_0097014.md b/md/GO/14/GO_0097014.md index 08c7c02e8a..31712c2d60 100644 --- a/md/GO/14/GO_0097014.md +++ b/md/GO/14/GO_0097014.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cytoplasm](../../GO/37/GO_0005737.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cilium](../../GO/29/GO_0005929.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_0003015.md b/md/GO/15/GO_0003015.md index 310585619c..bcf3e59959 100644 --- a/md/GO/15/GO_0003015.md +++ b/md/GO/15/GO_0003015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_0003415.md b/md/GO/15/GO_0003415.md index 253d4cedc1..c062bbba98 100644 --- a/md/GO/15/GO_0003415.md +++ b/md/GO/15/GO_0003415.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_0008015.md b/md/GO/15/GO_0008015.md index 4f358c4cd4..56be63e568 100644 --- a/md/GO/15/GO_0008015.md +++ b/md/GO/15/GO_0008015.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_0009415.md b/md/GO/15/GO_0009415.md index a2e1fb80b4..877a53dd14 100644 --- a/md/GO/15/GO_0009415.md +++ b/md/GO/15/GO_0009415.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_0021915.md b/md/GO/15/GO_0021915.md index 7675309376..1c55bed873 100644 --- a/md/GO/15/GO_0021915.md +++ b/md/GO/15/GO_0021915.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_1900115.md b/md/GO/15/GO_1900115.md index 107b3dcb41..3f5680c607 100644 --- a/md/GO/15/GO_1900115.md +++ b/md/GO/15/GO_1900115.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occurs in](../../BFO/66/BFO_0000066.md) some [extracellular region](../../GO/76/GO_0005576.md) and [regulation of signal transduction](../../GO/66/GO_0009966.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/15/GO_1901615.md b/md/GO/15/GO_1901615.md index 6aae3a1188..6516909fbe 100644 --- a/md/GO/15/GO_1901615.md +++ b/md/GO/15/GO_1901615.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0008016.md b/md/GO/16/GO_0008016.md index 66a1e5f924..2ac286680f 100644 --- a/md/GO/16/GO_0008016.md +++ b/md/GO/16/GO_0008016.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [heart contraction](../../GO/47/GO_0060047.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0009416.md b/md/GO/16/GO_0009416.md index 317a1e1d66..22274c9d1b 100644 --- a/md/GO/16/GO_0009416.md +++ b/md/GO/16/GO_0009416.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0019216.md b/md/GO/16/GO_0019216.md index 7d96ffb1f8..063ec2a58f 100644 --- a/md/GO/16/GO_0019216.md +++ b/md/GO/16/GO_0019216.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lipid metabolic process](../../GO/29/GO_0006629.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0030216.md b/md/GO/16/GO_0030216.md index d5fc2174e1..34de70a57b 100644 --- a/md/GO/16/GO_0030216.md +++ b/md/GO/16/GO_0030216.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0040016.md b/md/GO/16/GO_0040016.md index 7368229dba..645899af9f 100644 --- a/md/GO/16/GO_0040016.md +++ b/md/GO/16/GO_0040016.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0043616.md b/md/GO/16/GO_0043616.md index 66d0e37758..606346bcf4 100644 --- a/md/GO/16/GO_0043616.md +++ b/md/GO/16/GO_0043616.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0045616.md b/md/GO/16/GO_0045616.md index 331ba36b16..22f4fc922c 100644 --- a/md/GO/16/GO_0045616.md +++ b/md/GO/16/GO_0045616.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [keratinocyte differentiation](../../GO/16/GO_0030216.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0051216.md b/md/GO/16/GO_0051216.md index d2120fc620..538ec2bc68 100644 --- a/md/GO/16/GO_0051216.md +++ b/md/GO/16/GO_0051216.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_0051716.md b/md/GO/16/GO_0051716.md index 68345694b5..d9b0324e2f 100644 --- a/md/GO/16/GO_0051716.md +++ b/md/GO/16/GO_0051716.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/16/GO_1900116.md b/md/GO/16/GO_1900116.md index 6416d53dfd..410a030e29 100644 --- a/md/GO/16/GO_1900116.md +++ b/md/GO/16/GO_1900116.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [negative regulation of signal transduction](../../GO/68/GO_0009968.md) and [occurs in](../../BFO/66/BFO_0000066.md) some [extracellular region](../../GO/76/GO_0005576.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0001917.md b/md/GO/17/GO_0001917.md index 9612c52eb2..5fc72efa76 100644 --- a/md/GO/17/GO_0001917.md +++ b/md/GO/17/GO_0001917.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0002117.md b/md/GO/17/GO_0002117.md index 78784e3953..da4f6bdbaa 100644 --- a/md/GO/17/GO_0002117.md +++ b/md/GO/17/GO_0002117.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0002317.md b/md/GO/17/GO_0002317.md index b60ffbf2d6..ae00d3a46f 100644 --- a/md/GO/17/GO_0002317.md +++ b/md/GO/17/GO_0002317.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0008217.md b/md/GO/17/GO_0008217.md index 853e7bc8ab..7e0bdd2f94 100644 --- a/md/GO/17/GO_0008217.md +++ b/md/GO/17/GO_0008217.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0010817.md b/md/GO/17/GO_0010817.md index 93ba5e711b..c8ef61a648 100644 --- a/md/GO/17/GO_0010817.md +++ b/md/GO/17/GO_0010817.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0030217.md b/md/GO/17/GO_0030217.md index 57da4b3cc3..1f2d89cf70 100644 --- a/md/GO/17/GO_0030217.md +++ b/md/GO/17/GO_0030217.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0045617.md b/md/GO/17/GO_0045617.md index 211aa51209..a930b35b1b 100644 --- a/md/GO/17/GO_0045617.md +++ b/md/GO/17/GO_0045617.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [keratinocyte differentiation](../../GO/16/GO_0030216.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0046717.md b/md/GO/17/GO_0046717.md index b69b2facb9..4eb0e4fc8c 100644 --- a/md/GO/17/GO_0046717.md +++ b/md/GO/17/GO_0046717.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0050817.md b/md/GO/17/GO_0050817.md index aa1548df3b..aa4e663366 100644 --- a/md/GO/17/GO_0050817.md +++ b/md/GO/17/GO_0050817.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/17/GO_0055117.md b/md/GO/17/GO_0055117.md index 682e34fd93..750e1eb505 100644 --- a/md/GO/17/GO_0055117.md +++ b/md/GO/17/GO_0055117.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cardiac muscle contraction](../../GO/48/GO_0060048.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/18/GO_0002818.md b/md/GO/18/GO_0002818.md index d2acaffc26..1704b9bc98 100644 --- a/md/GO/18/GO_0002818.md +++ b/md/GO/18/GO_0002818.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [defense response](../../GO/52/GO_0006952.md) and [occurs in](../../BFO/66/BFO_0000066.md) some [intracellular](../../GO/22/GO_0005622.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/18/GO_0007618.md b/md/GO/18/GO_0007618.md index fdcb902ad3..454b595572 100644 --- a/md/GO/18/GO_0007618.md +++ b/md/GO/18/GO_0007618.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/18/GO_0019218.md b/md/GO/18/GO_0019218.md index 019443a7dc..88f7eebc67 100644 --- a/md/GO/18/GO_0019218.md +++ b/md/GO/18/GO_0019218.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [steroid metabolic process](../../GO/02/GO_0008202.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/18/GO_0050818.md b/md/GO/18/GO_0050818.md index f92be76118..48241532c8 100644 --- a/md/GO/18/GO_0050818.md +++ b/md/GO/18/GO_0050818.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [coagulation](../../GO/17/GO_0050817.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/18/GO_0055118.md b/md/GO/18/GO_0055118.md index cd3ee2eddf..5f1555cfa1 100644 --- a/md/GO/18/GO_0055118.md +++ b/md/GO/18/GO_0055118.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cardiac muscle contraction](../../GO/48/GO_0060048.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0002119.md b/md/GO/19/GO_0002119.md index 1c011f26f6..7cc7ee45cb 100644 --- a/md/GO/19/GO_0002119.md +++ b/md/GO/19/GO_0002119.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0002319.md b/md/GO/19/GO_0002319.md index 90c82be3ae..d5229afa85 100644 --- a/md/GO/19/GO_0002319.md +++ b/md/GO/19/GO_0002319.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0003019.md b/md/GO/19/GO_0003019.md index 605846dba9..b2ea738bc2 100644 --- a/md/GO/19/GO_0003019.md +++ b/md/GO/19/GO_0003019.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0045619.md b/md/GO/19/GO_0045619.md index f577d7ef1f..5c5b0315f7 100644 --- a/md/GO/19/GO_0045619.md +++ b/md/GO/19/GO_0045619.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lymphocyte differentiation](../../GO/98/GO_0030098.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0048519.md b/md/GO/19/GO_0048519.md index 7885e02ea0..a4b66a15f5 100644 --- a/md/GO/19/GO_0048519.md +++ b/md/GO/19/GO_0048519.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [biological_process](../../GO/50/GO_0008150.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/19/GO_0050819.md b/md/GO/19/GO_0050819.md index bb9508b6f2..bfcb538241 100644 --- a/md/GO/19/GO_0050819.md +++ b/md/GO/19/GO_0050819.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [coagulation](../../GO/17/GO_0050817.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0001820.md b/md/GO/20/GO_0001820.md index 8ea7abc13d..74d236c7b0 100644 --- a/md/GO/20/GO_0001820.md +++ b/md/GO/20/GO_0001820.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0002520.md b/md/GO/20/GO_0002520.md index fcfb07abe8..f5096a9276 100644 --- a/md/GO/20/GO_0002520.md +++ b/md/GO/20/GO_0002520.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0006520.md b/md/GO/20/GO_0006520.md index a56829cdb2..9116bbeacf 100644 --- a/md/GO/20/GO_0006520.md +++ b/md/GO/20/GO_0006520.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0007320.md b/md/GO/20/GO_0007320.md index df162acbc8..0beeb05d4f 100644 --- a/md/GO/20/GO_0007320.md +++ b/md/GO/20/GO_0007320.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0007620.md b/md/GO/20/GO_0007620.md index 238ef335ee..c4b53ea9c1 100644 --- a/md/GO/20/GO_0007620.md +++ b/md/GO/20/GO_0007620.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0040020.md b/md/GO/20/GO_0040020.md index df785d6431..b38f27ec25 100644 --- a/md/GO/20/GO_0040020.md +++ b/md/GO/20/GO_0040020.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [meiosis](../../GO/26/GO_0007126.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0044420.md b/md/GO/20/GO_0044420.md index ac566d07be..6d22242eeb 100644 --- a/md/GO/20/GO_0044420.md +++ b/md/GO/20/GO_0044420.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extracellular matrix](../../GO/12/GO_0031012.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0045620.md b/md/GO/20/GO_0045620.md index e3e51f8ed2..41f130f7ba 100644 --- a/md/GO/20/GO_0045620.md +++ b/md/GO/20/GO_0045620.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lymphocyte differentiation](../../GO/98/GO_0030098.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/20/GO_0045920.md b/md/GO/20/GO_0045920.md index e9c881e022..b2eabbd068 100644 --- a/md/GO/20/GO_0045920.md +++ b/md/GO/20/GO_0045920.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [exocytosis](../../GO/87/GO_0006887.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0002521.md b/md/GO/21/GO_0002521.md index 366ce805f2..f19ab9e14a 100644 --- a/md/GO/21/GO_0002521.md +++ b/md/GO/21/GO_0002521.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0006521.md b/md/GO/21/GO_0006521.md index 0ece99a14c..a17e07f46a 100644 --- a/md/GO/21/GO_0006521.md +++ b/md/GO/21/GO_0006521.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular amino acid metabolic process](../../GO/20/GO_0006520.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0010721.md b/md/GO/21/GO_0010721.md index 9f01ff0b2c..0cf41ac90e 100644 --- a/md/GO/21/GO_0010721.md +++ b/md/GO/21/GO_0010721.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell development](../../GO/68/GO_0048468.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0014821.md b/md/GO/21/GO_0014821.md index 382c12f51a..95cae8017b 100644 --- a/md/GO/21/GO_0014821.md +++ b/md/GO/21/GO_0014821.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0030421.md b/md/GO/21/GO_0030421.md index f664d8eca1..a408c3d8ef 100644 --- a/md/GO/21/GO_0030421.md +++ b/md/GO/21/GO_0030421.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0042221.md b/md/GO/21/GO_0042221.md index c64ba64aae..15a468265c 100644 --- a/md/GO/21/GO_0042221.md +++ b/md/GO/21/GO_0042221.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0042321.md b/md/GO/21/GO_0042321.md index c7361a3dda..5dbb2be983 100644 --- a/md/GO/21/GO_0042321.md +++ b/md/GO/21/GO_0042321.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [circadian sleep/wake cycle, sleep](../../GO/02/GO_0050802.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0044421.md b/md/GO/21/GO_0044421.md index 955791cd4c..7fbf27cab6 100644 --- a/md/GO/21/GO_0044421.md +++ b/md/GO/21/GO_0044421.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extracellular region](../../GO/76/GO_0005576.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0045321.md b/md/GO/21/GO_0045321.md index 25a39a7595..4d4c3e87f9 100644 --- a/md/GO/21/GO_0045321.md +++ b/md/GO/21/GO_0045321.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0048521.md b/md/GO/21/GO_0048521.md index aa08f262b7..b964161c51 100644 --- a/md/GO/21/GO_0048521.md +++ b/md/GO/21/GO_0048521.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [behavior](../../GO/10/GO_0007610.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_0051321.md b/md/GO/21/GO_0051321.md index ee77315a26..4ca86636af 100644 --- a/md/GO/21/GO_0051321.md +++ b/md/GO/21/GO_0051321.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_2000021.md b/md/GO/21/GO_2000021.md index 915263b2d2..a204ef61d7 100644 --- a/md/GO/21/GO_2000021.md +++ b/md/GO/21/GO_2000021.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [ion homeostasis](../../GO/01/GO_0050801.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/21/GO_2000821.md b/md/GO/21/GO_2000821.md index e2eb2f3dd2..244d323ccc 100644 --- a/md/GO/21/GO_2000821.md +++ b/md/GO/21/GO_2000821.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [grooming behavior](../../GO/25/GO_0007625.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0002322.md b/md/GO/22/GO_0002322.md index 2f738edd8a..9d2844baea 100644 --- a/md/GO/22/GO_0002322.md +++ b/md/GO/22/GO_0002322.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [B cell proliferation](../../GO/00/GO_0042100.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0005622.md b/md/GO/22/GO_0005622.md index 58638b7c02..f0c4a2de8c 100644 --- a/md/GO/22/GO_0005622.md +++ b/md/GO/22/GO_0005622.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0006022.md b/md/GO/22/GO_0006022.md index 306a4ed283..55212a13dc 100644 --- a/md/GO/22/GO_0006022.md +++ b/md/GO/22/GO_0006022.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0007622.md b/md/GO/22/GO_0007622.md index 4a5166f363..213ca43044 100644 --- a/md/GO/22/GO_0007622.md +++ b/md/GO/22/GO_0007622.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0019222.md b/md/GO/22/GO_0019222.md index e0def72719..0406b71c26 100644 --- a/md/GO/22/GO_0019222.md +++ b/md/GO/22/GO_0019222.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [metabolic process](../../GO/52/GO_0008152.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0044422.md b/md/GO/22/GO_0044422.md index 17b91992c2..be8ad2d41c 100644 --- a/md/GO/22/GO_0044422.md +++ b/md/GO/22/GO_0044422.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [organelle](../../GO/26/GO_0043226.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/22/GO_0045822.md b/md/GO/22/GO_0045822.md index e882c0f419..1671bf5d42 100644 --- a/md/GO/22/GO_0045822.md +++ b/md/GO/22/GO_0045822.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [heart contraction](../../GO/47/GO_0060047.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0005623.md b/md/GO/23/GO_0005623.md index a55181b0bb..8a9a947d2a 100644 --- a/md/GO/23/GO_0005623.md +++ b/md/GO/23/GO_0005623.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0006023.md b/md/GO/23/GO_0006023.md index a69c1f5265..bc1897d751 100644 --- a/md/GO/23/GO_0006023.md +++ b/md/GO/23/GO_0006023.md @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0007623.md b/md/GO/23/GO_0007623.md index 87a5fe3c87..f48b494883 100644 --- a/md/GO/23/GO_0007623.md +++ b/md/GO/23/GO_0007623.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0016023.md b/md/GO/23/GO_0016023.md index 9a050401b1..1117edcc2c 100644 --- a/md/GO/23/GO_0016023.md +++ b/md/GO/23/GO_0016023.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [membrane-bounded vesicle](../../GO/88/GO_0031988.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cytoplasm](../../GO/37/GO_0005737.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0031323.md b/md/GO/23/GO_0031323.md index 5a0ec5e358..f3acd9e9ac 100644 --- a/md/GO/23/GO_0031323.md +++ b/md/GO/23/GO_0031323.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular metabolic process](../../GO/37/GO_0044237.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0038023.md b/md/GO/23/GO_0038023.md index 8bcfaf24fb..16a1ed1815 100644 --- a/md/GO/23/GO_0038023.md +++ b/md/GO/23/GO_0038023.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [signal transduction](../../GO/65/GO_0007165.md) and [receptor activity](../../GO/72/GO_0004872.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0042323.md b/md/GO/23/GO_0042323.md index 39ae49d270..f70b95dd87 100644 --- a/md/GO/23/GO_0042323.md +++ b/md/GO/23/GO_0042323.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [circadian sleep/wake cycle, non-REM sleep](../../GO/48/GO_0042748.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/23/GO_0048523.md b/md/GO/23/GO_0048523.md index a0183f6ea9..f20b864794 100644 --- a/md/GO/23/GO_0048523.md +++ b/md/GO/23/GO_0048523.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular process](../../GO/87/GO_0009987.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/24/GO_0006024.md b/md/GO/24/GO_0006024.md index 3e8f518f8e..54e88d47f8 100644 --- a/md/GO/24/GO_0006024.md +++ b/md/GO/24/GO_0006024.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/24/GO_0030424.md b/md/GO/24/GO_0030424.md index acfb9b0134..9231a7dc5f 100644 --- a/md/GO/24/GO_0030424.md +++ b/md/GO/24/GO_0030424.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/24/GO_0031324.md b/md/GO/24/GO_0031324.md index d08837a764..400aa78f5e 100644 --- a/md/GO/24/GO_0031324.md +++ b/md/GO/24/GO_0031324.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular metabolic process](../../GO/37/GO_0044237.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/24/GO_0031424.md b/md/GO/24/GO_0031424.md index da22254aff..7f08f0fe5d 100644 --- a/md/GO/24/GO_0031424.md +++ b/md/GO/24/GO_0031424.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/24/GO_0044424.md b/md/GO/24/GO_0044424.md index a76f3083a6..5a6f2d737f 100644 --- a/md/GO/24/GO_0044424.md +++ b/md/GO/24/GO_0044424.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intracellular](../../GO/22/GO_0005622.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0001525.md b/md/GO/25/GO_0001525.md index 5d1ee20f0d..15bc9277e9 100644 --- a/md/GO/25/GO_0001525.md +++ b/md/GO/25/GO_0001525.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0003025.md b/md/GO/25/GO_0003025.md index da6821f777..b2bcdb0e74 100644 --- a/md/GO/25/GO_0003025.md +++ b/md/GO/25/GO_0003025.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0006725.md b/md/GO/25/GO_0006725.md index d1c711eca0..6b804f97f2 100644 --- a/md/GO/25/GO_0006725.md +++ b/md/GO/25/GO_0006725.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0007625.md b/md/GO/25/GO_0007625.md index 76a4fcefea..8246dde689 100644 --- a/md/GO/25/GO_0007625.md +++ b/md/GO/25/GO_0007625.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0016525.md b/md/GO/25/GO_0016525.md index 27ddcefe24..3deadfad50 100644 --- a/md/GO/25/GO_0016525.md +++ b/md/GO/25/GO_0016525.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [angiogenesis](../../GO/25/GO_0001525.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0043025.md b/md/GO/25/GO_0043025.md index 2737286e9d..7dd383d4fa 100644 --- a/md/GO/25/GO_0043025.md +++ b/md/GO/25/GO_0043025.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0071625.md b/md/GO/25/GO_0071625.md index 365bc5bab9..60b79abaab 100644 --- a/md/GO/25/GO_0071625.md +++ b/md/GO/25/GO_0071625.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/25/GO_0090325.md b/md/GO/25/GO_0090325.md index 942c98c824..93b71829ad 100644 --- a/md/GO/25/GO_0090325.md +++ b/md/GO/25/GO_0090325.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [locomotion involved in locomotory behavior](../../GO/87/GO_0031987.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0007126.md b/md/GO/26/GO_0007126.md index f4534753de..e334407e90 100644 --- a/md/GO/26/GO_0007126.md +++ b/md/GO/26/GO_0007126.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0007626.md b/md/GO/26/GO_0007626.md index adb1b2c74f..8f0e990278 100644 --- a/md/GO/26/GO_0007626.md +++ b/md/GO/26/GO_0007626.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0031326.md b/md/GO/26/GO_0031326.md index 70f1f03352..d4a058291c 100644 --- a/md/GO/26/GO_0031326.md +++ b/md/GO/26/GO_0031326.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular biosynthetic process](../../GO/49/GO_0044249.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0043226.md b/md/GO/26/GO_0043226.md index 545a30170b..5c241b31de 100644 --- a/md/GO/26/GO_0043226.md +++ b/md/GO/26/GO_0043226.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0045926.md b/md/GO/26/GO_0045926.md index 2fb24a36fe..96ff481cb6 100644 --- a/md/GO/26/GO_0045926.md +++ b/md/GO/26/GO_0045926.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [growth](../../GO/07/GO_0040007.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0051726.md b/md/GO/26/GO_0051726.md index 3f81309f54..882fbbd3fb 100644 --- a/md/GO/26/GO_0051726.md +++ b/md/GO/26/GO_0051726.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell cycle](../../GO/49/GO_0007049.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_0071626.md b/md/GO/26/GO_0071626.md index 3d4a0eaf8d..87c0f7a47b 100644 --- a/md/GO/26/GO_0071626.md +++ b/md/GO/26/GO_0071626.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/26/GO_2000026.md b/md/GO/26/GO_2000026.md index 5e36e239d3..2ad2bba45d 100644 --- a/md/GO/26/GO_2000026.md +++ b/md/GO/26/GO_2000026.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [multicellular organismal development](../../GO/75/GO_0007275.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0002027.md b/md/GO/27/GO_0002027.md index 344842c0be..2003e3c125 100644 --- a/md/GO/27/GO_0002027.md +++ b/md/GO/27/GO_0002027.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0008527.md b/md/GO/27/GO_0008527.md index 822da5ee42..964ac72267 100644 --- a/md/GO/27/GO_0008527.md +++ b/md/GO/27/GO_0008527.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0031327.md b/md/GO/27/GO_0031327.md index 56a357d09f..eee26adc45 100644 --- a/md/GO/27/GO_0031327.md +++ b/md/GO/27/GO_0031327.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular biosynthetic process](../../GO/49/GO_0044249.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0042127.md b/md/GO/27/GO_0042127.md index c849d63cfc..50d2b37b38 100644 --- a/md/GO/27/GO_0042127.md +++ b/md/GO/27/GO_0042127.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell proliferation](../../GO/83/GO_0008283.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0043227.md b/md/GO/27/GO_0043227.md index 619fa3c2a7..ee360c277c 100644 --- a/md/GO/27/GO_0043227.md +++ b/md/GO/27/GO_0043227.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0050727.md b/md/GO/27/GO_0050727.md index b7c9750caa..0f1004327c 100644 --- a/md/GO/27/GO_0050727.md +++ b/md/GO/27/GO_0050727.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [inflammatory response](../../GO/54/GO_0006954.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0055127.md b/md/GO/27/GO_0055127.md index 3d4ff564a9..f3771fedf1 100644 --- a/md/GO/27/GO_0055127.md +++ b/md/GO/27/GO_0055127.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0060627.md b/md/GO/27/GO_0060627.md index 824e7ea333..5724b41864 100644 --- a/md/GO/27/GO_0060627.md +++ b/md/GO/27/GO_0060627.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [vesicle-mediated transport](../../GO/92/GO_0016192.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_0090327.md b/md/GO/27/GO_0090327.md index ae4dda376b..dd2f854cd2 100644 --- a/md/GO/27/GO_0090327.md +++ b/md/GO/27/GO_0090327.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [locomotion involved in locomotory behavior](../../GO/87/GO_0031987.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/27/GO_2000027.md b/md/GO/27/GO_2000027.md index 9a76fa9141..2587cf3077 100644 --- a/md/GO/27/GO_2000027.md +++ b/md/GO/27/GO_2000027.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [organ morphogenesis](../../GO/87/GO_0009887.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0006928.md b/md/GO/28/GO_0006928.md index e3600803ce..7f2f31750e 100644 --- a/md/GO/28/GO_0006928.md +++ b/md/GO/28/GO_0006928.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0009628.md b/md/GO/28/GO_0009628.md index f1b2a26b4d..e5f8909d4c 100644 --- a/md/GO/28/GO_0009628.md +++ b/md/GO/28/GO_0009628.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0043228.md b/md/GO/28/GO_0043228.md index 3c5e233efa..8b746c258a 100644 --- a/md/GO/28/GO_0043228.md +++ b/md/GO/28/GO_0043228.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0050728.md b/md/GO/28/GO_0050728.md index d077b0e079..670f5dcf95 100644 --- a/md/GO/28/GO_0050728.md +++ b/md/GO/28/GO_0050728.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [inflammatory response](../../GO/54/GO_0006954.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0051128.md b/md/GO/28/GO_0051128.md index c447add2a7..a2307203b9 100644 --- a/md/GO/28/GO_0051128.md +++ b/md/GO/28/GO_0051128.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular component organization](../../GO/43/GO_0016043.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_0090328.md b/md/GO/28/GO_0090328.md index b832ca3a3a..62d96e9699 100644 --- a/md/GO/28/GO_0090328.md +++ b/md/GO/28/GO_0090328.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [olfactory learning](../../GO/55/GO_0008355.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/28/GO_2000828.md b/md/GO/28/GO_2000828.md index 74e1153596..0b71801cae 100644 --- a/md/GO/28/GO_2000828.md +++ b/md/GO/28/GO_2000828.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [parathyroid hormone secretion](../../GO/98/GO_0035898.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0005929.md b/md/GO/29/GO_0005929.md index 5a34d4e8c4..9e3537d302 100644 --- a/md/GO/29/GO_0005929.md +++ b/md/GO/29/GO_0005929.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0006629.md b/md/GO/29/GO_0006629.md index 0957cd6ac1..52f778de73 100644 --- a/md/GO/29/GO_0006629.md +++ b/md/GO/29/GO_0006629.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0009629.md b/md/GO/29/GO_0009629.md index e04fdce446..eef1127745 100644 --- a/md/GO/29/GO_0009629.md +++ b/md/GO/29/GO_0009629.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0035929.md b/md/GO/29/GO_0035929.md index 3e2703abf6..66f024b43f 100644 --- a/md/GO/29/GO_0035929.md +++ b/md/GO/29/GO_0035929.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0043229.md b/md/GO/29/GO_0043229.md index 5a1c704dc8..666d837479 100644 --- a/md/GO/29/GO_0043229.md +++ b/md/GO/29/GO_0043229.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0048729.md b/md/GO/29/GO_0048729.md index 83ffa166eb..1a4148b692 100644 --- a/md/GO/29/GO_0048729.md +++ b/md/GO/29/GO_0048729.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0051129.md b/md/GO/29/GO_0051129.md index 8b65131f0e..737a3ca869 100644 --- a/md/GO/29/GO_0051129.md +++ b/md/GO/29/GO_0051129.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular component organization](../../GO/43/GO_0016043.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_0060429.md b/md/GO/29/GO_0060429.md index 2fbc47850a..9f8c889961 100644 --- a/md/GO/29/GO_0060429.md +++ b/md/GO/29/GO_0060429.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/29/GO_2000829.md b/md/GO/29/GO_2000829.md index 9ddbeb8295..819d7b6e99 100644 --- a/md/GO/29/GO_2000829.md +++ b/md/GO/29/GO_2000829.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [parathyroid hormone secretion](../../GO/98/GO_0035898.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0003330.md b/md/GO/30/GO_0003330.md index d46ea65f1b..2d22efc9f7 100644 --- a/md/GO/30/GO_0003330.md +++ b/md/GO/30/GO_0003330.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [extracellular matrix constituent secretion](../../GO/78/GO_0070278.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0004930.md b/md/GO/30/GO_0004930.md index 072b9e2fc7..0bdc6a88ed 100644 --- a/md/GO/30/GO_0004930.md +++ b/md/GO/30/GO_0004930.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0019230.md b/md/GO/30/GO_0019230.md index d288ababff..d516e2da19 100644 --- a/md/GO/30/GO_0019230.md +++ b/md/GO/30/GO_0019230.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0032330.md b/md/GO/30/GO_0032330.md index 2ba65503e6..93ed22760b 100644 --- a/md/GO/30/GO_0032330.md +++ b/md/GO/30/GO_0032330.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [chondrocyte differentiation](../../GO/62/GO_0002062.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0043230.md b/md/GO/30/GO_0043230.md index a462c3f966..d18c10936e 100644 --- a/md/GO/30/GO_0043230.md +++ b/md/GO/30/GO_0043230.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organelle](../../GO/26/GO_0043226.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extracellular region](../../GO/76/GO_0005576.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0044430.md b/md/GO/30/GO_0044430.md index 6c265d8d37..a6aad4ea07 100644 --- a/md/GO/30/GO_0044430.md +++ b/md/GO/30/GO_0044430.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cytoskeleton](../../GO/56/GO_0005856.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0051930.md b/md/GO/30/GO_0051930.md index 41c989a09e..3a623dc812 100644 --- a/md/GO/30/GO_0051930.md +++ b/md/GO/30/GO_0051930.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [sensory perception of pain](../../GO/33/GO_0019233.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/30/GO_0090030.md b/md/GO/30/GO_0090030.md index 60ffa47552..76d705ef8d 100644 --- a/md/GO/30/GO_0090030.md +++ b/md/GO/30/GO_0090030.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0007631.md b/md/GO/31/GO_0007631.md index 4f202111bd..e39209e04f 100644 --- a/md/GO/31/GO_0007631.md +++ b/md/GO/31/GO_0007631.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0016331.md b/md/GO/31/GO_0016331.md index bc5d7dcf5d..1e5d599e85 100644 --- a/md/GO/31/GO_0016331.md +++ b/md/GO/31/GO_0016331.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0030431.md b/md/GO/31/GO_0030431.md index 3b781fcb9f..0286291109 100644 --- a/md/GO/31/GO_0030431.md +++ b/md/GO/31/GO_0030431.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0032331.md b/md/GO/31/GO_0032331.md index 8370f48fd2..c00a6f59cc 100644 --- a/md/GO/31/GO_0032331.md +++ b/md/GO/31/GO_0032331.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [chondrocyte differentiation](../../GO/62/GO_0002062.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0043231.md b/md/GO/31/GO_0043231.md index cdd4b6c399..c938e2758c 100644 --- a/md/GO/31/GO_0043231.md +++ b/md/GO/31/GO_0043231.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0048731.md b/md/GO/31/GO_0048731.md index 50890a5d0d..a74c58a169 100644 --- a/md/GO/31/GO_0048731.md +++ b/md/GO/31/GO_0048731.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_0051931.md b/md/GO/31/GO_0051931.md index c1488f9f55..de2cb9f25f 100644 --- a/md/GO/31/GO_0051931.md +++ b/md/GO/31/GO_0051931.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/31/GO_2000831.md b/md/GO/31/GO_2000831.md index fa3cbc269a..af254302d4 100644 --- a/md/GO/31/GO_2000831.md +++ b/md/GO/31/GO_2000831.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [steroid hormone secretion](../../GO/29/GO_0035929.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0002532.md b/md/GO/32/GO_0002532.md index 23da1bb80e..6767211131 100644 --- a/md/GO/32/GO_0002532.md +++ b/md/GO/32/GO_0002532.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0003332.md b/md/GO/32/GO_0003332.md index e4799a8e3b..ff0276bc43 100644 --- a/md/GO/32/GO_0003332.md +++ b/md/GO/32/GO_0003332.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [extracellular matrix constituent secretion](../../GO/78/GO_0070278.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0014832.md b/md/GO/32/GO_0014832.md index 8d53ea314b..6147ef79c7 100644 --- a/md/GO/32/GO_0014832.md +++ b/md/GO/32/GO_0014832.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0030432.md b/md/GO/32/GO_0030432.md index fabb6b489d..3816f72adf 100644 --- a/md/GO/32/GO_0030432.md +++ b/md/GO/32/GO_0030432.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0043232.md b/md/GO/32/GO_0043232.md index cf988428ff..7fa0b22608 100644 --- a/md/GO/32/GO_0043232.md +++ b/md/GO/32/GO_0043232.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0045932.md b/md/GO/32/GO_0045932.md index 0883a84991..df7ebb4314 100644 --- a/md/GO/32/GO_0045932.md +++ b/md/GO/32/GO_0045932.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [muscle contraction](../../GO/36/GO_0006936.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0048232.md b/md/GO/32/GO_0048232.md index ef7b06954a..20e89d344a 100644 --- a/md/GO/32/GO_0048232.md +++ b/md/GO/32/GO_0048232.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0050432.md b/md/GO/32/GO_0050432.md index f72aee0e90..3d4be95ba0 100644 --- a/md/GO/32/GO_0050432.md +++ b/md/GO/32/GO_0050432.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_0090032.md b/md/GO/32/GO_0090032.md index 191770482e..1aeb8c8636 100644 --- a/md/GO/32/GO_0090032.md +++ b/md/GO/32/GO_0090032.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/32/GO_2000832.md b/md/GO/32/GO_2000832.md index 3767e797e3..79b3a44990 100644 --- a/md/GO/32/GO_2000832.md +++ b/md/GO/32/GO_2000832.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [steroid hormone secretion](../../GO/29/GO_0035929.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0003433.md b/md/GO/33/GO_0003433.md index bde0199a52..818758f113 100644 --- a/md/GO/33/GO_0003433.md +++ b/md/GO/33/GO_0003433.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [chondrocyte development](../../GO/63/GO_0002063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endochondral bone morphogenesis](../../GO/50/GO_0060350.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0006833.md b/md/GO/33/GO_0006833.md index 2f50987a75..ab00fd92cb 100644 --- a/md/GO/33/GO_0006833.md +++ b/md/GO/33/GO_0006833.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0010033.md b/md/GO/33/GO_0010033.md index 58ad7ca610..5404110190 100644 --- a/md/GO/33/GO_0010033.md +++ b/md/GO/33/GO_0010033.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0015833.md b/md/GO/33/GO_0015833.md index 86e9317668..a4ba9f7e6f 100644 --- a/md/GO/33/GO_0015833.md +++ b/md/GO/33/GO_0015833.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0019233.md b/md/GO/33/GO_0019233.md index b78ac02234..2b7f708cc3 100644 --- a/md/GO/33/GO_0019233.md +++ b/md/GO/33/GO_0019233.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0044433.md b/md/GO/33/GO_0044433.md index dbe3f7eea7..b02a3fd0cf 100644 --- a/md/GO/33/GO_0044433.md +++ b/md/GO/33/GO_0044433.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cytoplasmic vesicle](../../GO/10/GO_0031410.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0045833.md b/md/GO/33/GO_0045833.md index 818aee6258..29b3879f09 100644 --- a/md/GO/33/GO_0045833.md +++ b/md/GO/33/GO_0045833.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lipid metabolic process](../../GO/29/GO_0006629.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/33/GO_0050433.md b/md/GO/33/GO_0050433.md index 2a3ed230f6..dd87894686 100644 --- a/md/GO/33/GO_0050433.md +++ b/md/GO/33/GO_0050433.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [catecholamine secretion](../../GO/32/GO_0050432.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/34/GO_0030334.md b/md/GO/34/GO_0030334.md index 75da28d0f5..6e9c8ff799 100644 --- a/md/GO/34/GO_0030334.md +++ b/md/GO/34/GO_0030334.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell migration](../../GO/77/GO_0016477.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/34/GO_0043234.md b/md/GO/34/GO_0043234.md index bec065d12f..65a5fa7d59 100644 --- a/md/GO/34/GO_0043234.md +++ b/md/GO/34/GO_0043234.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/34/GO_0048534.md b/md/GO/34/GO_0048534.md index 6372f59f60..a05e120fef 100644 --- a/md/GO/34/GO_0048534.md +++ b/md/GO/34/GO_0048534.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/34/GO_0051234.md b/md/GO/34/GO_0051234.md index b35475d847..63751c9e21 100644 --- a/md/GO/34/GO_0051234.md +++ b/md/GO/34/GO_0051234.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/34/GO_0080134.md b/md/GO/34/GO_0080134.md index 11ea37af32..3a2362a425 100644 --- a/md/GO/34/GO_0080134.md +++ b/md/GO/34/GO_0080134.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [response to stress](../../GO/50/GO_0006950.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0002335.md b/md/GO/35/GO_0002335.md index f86769b7c2..2ca1cf2156 100644 --- a/md/GO/35/GO_0002335.md +++ b/md/GO/35/GO_0002335.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0007635.md b/md/GO/35/GO_0007635.md index 2470916eb4..f1aff249ae 100644 --- a/md/GO/35/GO_0007635.md +++ b/md/GO/35/GO_0007635.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0010035.md b/md/GO/35/GO_0010035.md index 1444b3fbe8..b5bb86029e 100644 --- a/md/GO/35/GO_0010035.md +++ b/md/GO/35/GO_0010035.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0030935.md b/md/GO/35/GO_0030935.md index 5c26bc4cb9..e2ef51392f 100644 --- a/md/GO/35/GO_0030935.md +++ b/md/GO/35/GO_0030935.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0045835.md b/md/GO/35/GO_0045835.md index 8bb36345f1..c0493c76a2 100644 --- a/md/GO/35/GO_0045835.md +++ b/md/GO/35/GO_0045835.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [meiosis](../../GO/26/GO_0007126.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0061035.md b/md/GO/35/GO_0061035.md index bf19167dd7..ff5d4abc85 100644 --- a/md/GO/35/GO_0061035.md +++ b/md/GO/35/GO_0061035.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cartilage development](../../GO/16/GO_0051216.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_0080135.md b/md/GO/35/GO_0080135.md index 552b1cd32c..af43fa0591 100644 --- a/md/GO/35/GO_0080135.md +++ b/md/GO/35/GO_0080135.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular response to stress](../../GO/54/GO_0033554.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_1901135.md b/md/GO/35/GO_1901135.md index 139059e004..2fffdddd56 100644 --- a/md/GO/35/GO_1901135.md +++ b/md/GO/35/GO_1901135.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/35/GO_2000035.md b/md/GO/35/GO_2000035.md index 526202c5fd..a8bf092636 100644 --- a/md/GO/35/GO_2000035.md +++ b/md/GO/35/GO_2000035.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [stem cell division](../../GO/45/GO_0017145.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0006936.md b/md/GO/36/GO_0006936.md index 8252241085..056894aa19 100644 --- a/md/GO/36/GO_0006936.md +++ b/md/GO/36/GO_0006936.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0019236.md b/md/GO/36/GO_0019236.md index 5de775f583..cd9a9251df 100644 --- a/md/GO/36/GO_0019236.md +++ b/md/GO/36/GO_0019236.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0030336.md b/md/GO/36/GO_0030336.md index b7b6ba3720..5357e0a132 100644 --- a/md/GO/36/GO_0030336.md +++ b/md/GO/36/GO_0030336.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell migration](../../GO/77/GO_0016477.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0033036.md b/md/GO/36/GO_0033036.md index 92968a8127..01af69119b 100644 --- a/md/GO/36/GO_0033036.md +++ b/md/GO/36/GO_0033036.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0035636.md b/md/GO/36/GO_0035636.md index 3eb7b0d4de..97adb4f06c 100644 --- a/md/GO/36/GO_0035636.md +++ b/md/GO/36/GO_0035636.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0043436.md b/md/GO/36/GO_0043436.md index a5e87bdb46..2eda946a4e 100644 --- a/md/GO/36/GO_0043436.md +++ b/md/GO/36/GO_0043436.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/36/GO_0060136.md b/md/GO/36/GO_0060136.md index 35035c32e1..f98d887348 100644 --- a/md/GO/36/GO_0060136.md +++ b/md/GO/36/GO_0060136.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multicellular organismal reproductive process](../../GO/09/GO_0048609.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo development](../../GO/90/GO_0009790.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female pregnancy](../../GO/65/GO_0007565.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0005737.md b/md/GO/37/GO_0005737.md index c1ddb0fac3..423f547c13 100644 --- a/md/GO/37/GO_0005737.md +++ b/md/GO/37/GO_0005737.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0006837.md b/md/GO/37/GO_0006837.md index 959a960e05..931103adc6 100644 --- a/md/GO/37/GO_0006837.md +++ b/md/GO/37/GO_0006837.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0006937.md b/md/GO/37/GO_0006937.md index 49fb52f122..3e36409b24 100644 --- a/md/GO/37/GO_0006937.md +++ b/md/GO/37/GO_0006937.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [muscle contraction](../../GO/36/GO_0006936.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0010837.md b/md/GO/37/GO_0010837.md index 8dda45712d..26004d6ddb 100644 --- a/md/GO/37/GO_0010837.md +++ b/md/GO/37/GO_0010837.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [keratinocyte proliferation](../../GO/16/GO_0043616.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0015837.md b/md/GO/37/GO_0015837.md index 303e7c0aff..adbc5e5137 100644 --- a/md/GO/37/GO_0015837.md +++ b/md/GO/37/GO_0015837.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0044237.md b/md/GO/37/GO_0044237.md index e700fe891b..8e8349dad0 100644 --- a/md/GO/37/GO_0044237.md +++ b/md/GO/37/GO_0044237.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0045137.md b/md/GO/37/GO_0045137.md index 5908a8276a..6bcfd59f22 100644 --- a/md/GO/37/GO_0045137.md +++ b/md/GO/37/GO_0045137.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0051937.md b/md/GO/37/GO_0051937.md index 9c1070d371..05b5d9cbf7 100644 --- a/md/GO/37/GO_0051937.md +++ b/md/GO/37/GO_0051937.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_0061037.md b/md/GO/37/GO_0061037.md index a57b14f30b..6863584260 100644 --- a/md/GO/37/GO_0061037.md +++ b/md/GO/37/GO_0061037.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cartilage development](../../GO/16/GO_0051216.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/37/GO_1901137.md b/md/GO/37/GO_1901137.md index 65651f599f..73f6e98769 100644 --- a/md/GO/37/GO_1901137.md +++ b/md/GO/37/GO_1901137.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0001838.md b/md/GO/38/GO_0001838.md index 4b8d8953fe..fe8777401a 100644 --- a/md/GO/38/GO_0001838.md +++ b/md/GO/38/GO_0001838.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0032838.md b/md/GO/38/GO_0032838.md index 04519dd134..63403a5a7c 100644 --- a/md/GO/38/GO_0032838.md +++ b/md/GO/38/GO_0032838.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0033238.md b/md/GO/38/GO_0033238.md index 13a369aee6..677bdb18f9 100644 --- a/md/GO/38/GO_0033238.md +++ b/md/GO/38/GO_0033238.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular amine metabolic process](../../GO/06/GO_0044106.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0044238.md b/md/GO/38/GO_0044238.md index 0489aac991..bbaff1cbb9 100644 --- a/md/GO/38/GO_0044238.md +++ b/md/GO/38/GO_0044238.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0048638.md b/md/GO/38/GO_0048638.md index 21785f019e..a5202a1fcc 100644 --- a/md/GO/38/GO_0048638.md +++ b/md/GO/38/GO_0048638.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [developmental growth](../../GO/89/GO_0048589.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/38/GO_0061138.md b/md/GO/38/GO_0061138.md index faa3056d7d..efb0fa6e1b 100644 --- a/md/GO/38/GO_0061138.md +++ b/md/GO/38/GO_0061138.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0006939.md b/md/GO/39/GO_0006939.md index 3ce7c45c2f..28de31cb01 100644 --- a/md/GO/39/GO_0006939.md +++ b/md/GO/39/GO_0006939.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0010839.md b/md/GO/39/GO_0010839.md index 61ffb6d69c..b7371c891c 100644 --- a/md/GO/39/GO_0010839.md +++ b/md/GO/39/GO_0010839.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [keratinocyte proliferation](../../GO/16/GO_0043616.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0033239.md b/md/GO/39/GO_0033239.md index 6668d68d81..054c3fc279 100644 --- a/md/GO/39/GO_0033239.md +++ b/md/GO/39/GO_0033239.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular amine metabolic process](../../GO/06/GO_0044106.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0035239.md b/md/GO/39/GO_0035239.md index 17c00abd64..9a19b18cc6 100644 --- a/md/GO/39/GO_0035239.md +++ b/md/GO/39/GO_0035239.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0045939.md b/md/GO/39/GO_0045939.md index 2aa52d8e98..09d77ea50c 100644 --- a/md/GO/39/GO_0045939.md +++ b/md/GO/39/GO_0045939.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [steroid metabolic process](../../GO/02/GO_0008202.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/39/GO_0051239.md b/md/GO/39/GO_0051239.md index 6a2f598455..fa8606a400 100644 --- a/md/GO/39/GO_0051239.md +++ b/md/GO/39/GO_0051239.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [multicellular organismal process](../../GO/01/GO_0032501.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/40/GO_0006940.md b/md/GO/40/GO_0006940.md index 8efa758699..e237cde9c4 100644 --- a/md/GO/40/GO_0006940.md +++ b/md/GO/40/GO_0006940.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [smooth muscle contraction](../../GO/39/GO_0006939.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/40/GO_0032940.md b/md/GO/40/GO_0032940.md index b53f228ed8..edeb4df215 100644 --- a/md/GO/40/GO_0032940.md +++ b/md/GO/40/GO_0032940.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/40/GO_0048640.md b/md/GO/40/GO_0048640.md index edec5d6a4a..343a9ae8c9 100644 --- a/md/GO/40/GO_0048640.md +++ b/md/GO/40/GO_0048640.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [developmental growth](../../GO/89/GO_0048589.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/40/GO_0071840.md b/md/GO/40/GO_0071840.md index 872b21bcbe..ff144c42a1 100644 --- a/md/GO/40/GO_0071840.md +++ b/md/GO/40/GO_0071840.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0001841.md b/md/GO/41/GO_0001841.md index 95de83f5af..7b758db651 100644 --- a/md/GO/41/GO_0001841.md +++ b/md/GO/41/GO_0001841.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0006941.md b/md/GO/41/GO_0006941.md index aa14ff23b8..8de05dd000 100644 --- a/md/GO/41/GO_0006941.md +++ b/md/GO/41/GO_0006941.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0032941.md b/md/GO/41/GO_0032941.md index 7fabd5971a..a8d3c802b1 100644 --- a/md/GO/41/GO_0032941.md +++ b/md/GO/41/GO_0032941.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0034641.md b/md/GO/41/GO_0034641.md index 29bb5f6c3e..11052291f5 100644 --- a/md/GO/41/GO_0034641.md +++ b/md/GO/41/GO_0034641.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0044441.md b/md/GO/41/GO_0044441.md index 17df1e3447..f409f68c5e 100644 --- a/md/GO/41/GO_0044441.md +++ b/md/GO/41/GO_0044441.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cilium](../../GO/29/GO_0005929.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0051241.md b/md/GO/41/GO_0051241.md index cc55d08d71..f8b3b21749 100644 --- a/md/GO/41/GO_0051241.md +++ b/md/GO/41/GO_0051241.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [multicellular organismal process](../../GO/01/GO_0032501.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0051641.md b/md/GO/41/GO_0051641.md index a658746c25..e479cf576c 100644 --- a/md/GO/41/GO_0051641.md +++ b/md/GO/41/GO_0051641.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0060341.md b/md/GO/41/GO_0060341.md index b5a9a158c7..595397c572 100644 --- a/md/GO/41/GO_0060341.md +++ b/md/GO/41/GO_0060341.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular localization](../../GO/41/GO_0051641.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_0061041.md b/md/GO/41/GO_0061041.md index 22fc2a25c1..591921d55c 100644 --- a/md/GO/41/GO_0061041.md +++ b/md/GO/41/GO_0061041.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [wound healing](../../GO/60/GO_0042060.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/41/GO_2000241.md b/md/GO/41/GO_2000241.md index 0d601cf014..0f96b6d76d 100644 --- a/md/GO/41/GO_2000241.md +++ b/md/GO/41/GO_2000241.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [reproductive process](../../GO/14/GO_0022414.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/42/GO_0002442.md b/md/GO/42/GO_0002442.md index 01d47b4230..bbd81fef39 100644 --- a/md/GO/42/GO_0002442.md +++ b/md/GO/42/GO_0002442.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [inflammatory response](../../GO/54/GO_0006954.md) and [serotonin secretion](../../GO/20/GO_0001820.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/42/GO_0006942.md b/md/GO/42/GO_0006942.md index dbd0c00343..62a7b7705a 100644 --- a/md/GO/42/GO_0006942.md +++ b/md/GO/42/GO_0006942.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [striated muscle contraction](../../GO/41/GO_0006941.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/42/GO_1901342.md b/md/GO/42/GO_1901342.md index c8dc1315eb..f1cedd4120 100644 --- a/md/GO/42/GO_1901342.md +++ b/md/GO/42/GO_1901342.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [vasculature development](../../GO/44/GO_0001944.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/42/GO_2000242.md b/md/GO/42/GO_2000242.md index e4743b95bf..7805af2553 100644 --- a/md/GO/42/GO_2000242.md +++ b/md/GO/42/GO_2000242.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [reproductive process](../../GO/14/GO_0022414.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/42/GO_2000542.md b/md/GO/42/GO_2000542.md index f91a1ba79f..48ba82f1e3 100644 --- a/md/GO/42/GO_2000542.md +++ b/md/GO/42/GO_2000542.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [gastrulation](../../GO/69/GO_0007369.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_0016043.md b/md/GO/43/GO_0016043.md index b04ea6beb3..fc42daa4be 100644 --- a/md/GO/43/GO_0016043.md +++ b/md/GO/43/GO_0016043.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_0031943.md b/md/GO/43/GO_0031943.md index 71929703a8..7410d61a54 100644 --- a/md/GO/43/GO_0031943.md +++ b/md/GO/43/GO_0031943.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [glucocorticoid metabolic process](../../GO/11/GO_0008211.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_0032943.md b/md/GO/43/GO_0032943.md index b2abdfe240..dc50d06fba 100644 --- a/md/GO/43/GO_0032943.md +++ b/md/GO/43/GO_0032943.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_0045443.md b/md/GO/43/GO_0045443.md index f4f53195e6..08b06472d1 100644 --- a/md/GO/43/GO_0045443.md +++ b/md/GO/43/GO_0045443.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_0048243.md b/md/GO/43/GO_0048243.md index eab7bc8952..fb6a74f67e 100644 --- a/md/GO/43/GO_0048243.md +++ b/md/GO/43/GO_0048243.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/43/GO_1901343.md b/md/GO/43/GO_1901343.md index da9a53608d..6b13aa5d24 100644 --- a/md/GO/43/GO_1901343.md +++ b/md/GO/43/GO_1901343.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [vasculature development](../../GO/44/GO_0001944.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0001944.md b/md/GO/44/GO_0001944.md index 49dc90ba2b..8162c81b73 100644 --- a/md/GO/44/GO_0001944.md +++ b/md/GO/44/GO_0001944.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0003044.md b/md/GO/44/GO_0003044.md index cf97b5e80e..8c6cde9c61 100644 --- a/md/GO/44/GO_0003044.md +++ b/md/GO/44/GO_0003044.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0008544.md b/md/GO/44/GO_0008544.md index bafe64be25..c0bbd16019 100644 --- a/md/GO/44/GO_0008544.md +++ b/md/GO/44/GO_0008544.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0015844.md b/md/GO/44/GO_0015844.md index 7be51e9e79..eb2ae8e27c 100644 --- a/md/GO/44/GO_0015844.md +++ b/md/GO/44/GO_0015844.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0031644.md b/md/GO/44/GO_0031644.md index edf8b2a645..b2426166ec 100644 --- a/md/GO/44/GO_0031644.md +++ b/md/GO/44/GO_0031644.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [neurological system process](../../GO/77/GO_0050877.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0031944.md b/md/GO/44/GO_0031944.md index bb7c2315c1..0bbb0d1a66 100644 --- a/md/GO/44/GO_0031944.md +++ b/md/GO/44/GO_0031944.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [glucocorticoid metabolic process](../../GO/11/GO_0008211.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0032844.md b/md/GO/44/GO_0032844.md index b04990333b..8efbb33340 100644 --- a/md/GO/44/GO_0032844.md +++ b/md/GO/44/GO_0032844.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [homeostatic process](../../GO/92/GO_0042592.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0032944.md b/md/GO/44/GO_0032944.md index 3b89aa79d6..52fbd275db 100644 --- a/md/GO/44/GO_0032944.md +++ b/md/GO/44/GO_0032944.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [mononuclear cell proliferation](../../GO/43/GO_0032943.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0042044.md b/md/GO/44/GO_0042044.md index 322554e8f8..fad35935f7 100644 --- a/md/GO/44/GO_0042044.md +++ b/md/GO/44/GO_0042044.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0044444.md b/md/GO/44/GO_0044444.md index d01e9a1e06..9039a71de5 100644 --- a/md/GO/44/GO_0044444.md +++ b/md/GO/44/GO_0044444.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cytoplasm](../../GO/37/GO_0005737.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/44/GO_0045744.md b/md/GO/44/GO_0045744.md index 7b3c8fe722..f2dfc8fbd3 100644 --- a/md/GO/44/GO_0045744.md +++ b/md/GO/44/GO_0045744.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [G-protein coupled receptor signaling pathway](../../GO/86/GO_0007186.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0017145.md b/md/GO/45/GO_0017145.md index 6e28174038..2b65ed0f32 100644 --- a/md/GO/45/GO_0017145.md +++ b/md/GO/45/GO_0017145.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0031645.md b/md/GO/45/GO_0031645.md index 46dc87086c..b55773f84b 100644 --- a/md/GO/45/GO_0031645.md +++ b/md/GO/45/GO_0031645.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [neurological system process](../../GO/77/GO_0050877.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0032845.md b/md/GO/45/GO_0032845.md index 69a85aa985..d927a4cbc5 100644 --- a/md/GO/45/GO_0032845.md +++ b/md/GO/45/GO_0032845.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [homeostatic process](../../GO/92/GO_0042592.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0032945.md b/md/GO/45/GO_0032945.md index ac7b87bae6..409cfa3454 100644 --- a/md/GO/45/GO_0032945.md +++ b/md/GO/45/GO_0032945.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [mononuclear cell proliferation](../../GO/43/GO_0032943.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0042445.md b/md/GO/45/GO_0042445.md index 172226fae3..f15eabb7b2 100644 --- a/md/GO/45/GO_0042445.md +++ b/md/GO/45/GO_0042445.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0042745.md b/md/GO/45/GO_0042745.md index e530d6d33c..796a49f649 100644 --- a/md/GO/45/GO_0042745.md +++ b/md/GO/45/GO_0042745.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0046545.md b/md/GO/45/GO_0046545.md index 44a0a970af..d993f79e67 100644 --- a/md/GO/45/GO_0046545.md +++ b/md/GO/45/GO_0046545.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0051245.md b/md/GO/45/GO_0051245.md index b837008aa9..bd59962d30 100644 --- a/md/GO/45/GO_0051245.md +++ b/md/GO/45/GO_0051245.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular defense response](../../GO/68/GO_0006968.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0051445.md b/md/GO/45/GO_0051445.md index 0a66c8946c..e397083127 100644 --- a/md/GO/45/GO_0051445.md +++ b/md/GO/45/GO_0051445.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [meiotic cell cycle](../../GO/21/GO_0051321.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_0061045.md b/md/GO/45/GO_0061045.md index ce6d37ed43..70648cdc51 100644 --- a/md/GO/45/GO_0061045.md +++ b/md/GO/45/GO_0061045.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [wound healing](../../GO/60/GO_0042060.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/45/GO_2000145.md b/md/GO/45/GO_2000145.md index 5b6d846a54..12c76b73dd 100644 --- a/md/GO/45/GO_2000145.md +++ b/md/GO/45/GO_2000145.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell motility](../../GO/70/GO_0048870.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0002246.md b/md/GO/46/GO_0002246.md index dc0a213ed1..62c4523b82 100644 --- a/md/GO/46/GO_0002246.md +++ b/md/GO/46/GO_0002246.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [inflammatory response](../../GO/54/GO_0006954.md) and [wound healing](../../GO/60/GO_0042060.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0010646.md b/md/GO/46/GO_0010646.md index 06735f7ac5..d3e8ffadf8 100644 --- a/md/GO/46/GO_0010646.md +++ b/md/GO/46/GO_0010646.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell communication](../../GO/54/GO_0007154.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0031946.md b/md/GO/46/GO_0031946.md index 13774efb91..1294343e50 100644 --- a/md/GO/46/GO_0031946.md +++ b/md/GO/46/GO_0031946.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [glucocorticoid biosynthetic process](../../GO/04/GO_0006704.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0042446.md b/md/GO/46/GO_0042446.md index c4c71dea09..8b46367bfd 100644 --- a/md/GO/46/GO_0042446.md +++ b/md/GO/46/GO_0042446.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0044446.md b/md/GO/46/GO_0044446.md index 83f561f582..5de476959a 100644 --- a/md/GO/46/GO_0044446.md +++ b/md/GO/46/GO_0044446.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0048646.md b/md/GO/46/GO_0048646.md index e0bb3f58c4..a5e84c5c74 100644 --- a/md/GO/46/GO_0048646.md +++ b/md/GO/46/GO_0048646.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_0051046.md b/md/GO/46/GO_0051046.md index 5e4c8d1fb6..ec781206bd 100644 --- a/md/GO/46/GO_0051046.md +++ b/md/GO/46/GO_0051046.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [secretion](../../GO/03/GO_0046903.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_1900046.md b/md/GO/46/GO_1900046.md index 2b5fb9ff3e..cfd4a382c9 100644 --- a/md/GO/46/GO_1900046.md +++ b/md/GO/46/GO_1900046.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [hemostasis](../../GO/99/GO_0007599.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/46/GO_2000146.md b/md/GO/46/GO_2000146.md index a0055c38e6..0df06767ca 100644 --- a/md/GO/46/GO_2000146.md +++ b/md/GO/46/GO_2000146.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell motility](../../GO/70/GO_0048870.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_0031347.md b/md/GO/47/GO_0031347.md index de3028732a..9ce2402cee 100644 --- a/md/GO/47/GO_0031347.md +++ b/md/GO/47/GO_0031347.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [defense response](../../GO/52/GO_0006952.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_0031947.md b/md/GO/47/GO_0031947.md index 6789f9c3bb..80b92ec1b4 100644 --- a/md/GO/47/GO_0031947.md +++ b/md/GO/47/GO_0031947.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [glucocorticoid biosynthetic process](../../GO/04/GO_0006704.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_0036147.md b/md/GO/47/GO_0036147.md index 17a4b22251..653789631a 100644 --- a/md/GO/47/GO_0036147.md +++ b/md/GO/47/GO_0036147.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_0051447.md b/md/GO/47/GO_0051447.md index ffe96167c2..66f2cff48d 100644 --- a/md/GO/47/GO_0051447.md +++ b/md/GO/47/GO_0051447.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [meiotic cell cycle](../../GO/21/GO_0051321.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_0060047.md b/md/GO/47/GO_0060047.md index 5d0ce97770..ea3ba333a5 100644 --- a/md/GO/47/GO_0060047.md +++ b/md/GO/47/GO_0060047.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_1900047.md b/md/GO/47/GO_1900047.md index 9e58feaaa5..ebee24f525 100644 --- a/md/GO/47/GO_1900047.md +++ b/md/GO/47/GO_1900047.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [hemostasis](../../GO/99/GO_0007599.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/47/GO_2000647.md b/md/GO/47/GO_2000647.md index 50bafa9759..099a138b10 100644 --- a/md/GO/47/GO_2000647.md +++ b/md/GO/47/GO_2000647.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [stem cell proliferation](../../GO/89/GO_0072089.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0007548.md b/md/GO/48/GO_0007548.md index eca4a8a2e1..41974ccdc1 100644 --- a/md/GO/48/GO_0007548.md +++ b/md/GO/48/GO_0007548.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0010648.md b/md/GO/48/GO_0010648.md index c7aafe74c5..013911c344 100644 --- a/md/GO/48/GO_0010648.md +++ b/md/GO/48/GO_0010648.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell communication](../../GO/54/GO_0007154.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0010948.md b/md/GO/48/GO_0010948.md index b5eca79c1e..fda58b0da6 100644 --- a/md/GO/48/GO_0010948.md +++ b/md/GO/48/GO_0010948.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell cycle process](../../GO/02/GO_0022402.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0014848.md b/md/GO/48/GO_0014848.md index c20f817722..7b4d58c47d 100644 --- a/md/GO/48/GO_0014848.md +++ b/md/GO/48/GO_0014848.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0016048.md b/md/GO/48/GO_0016048.md index ed5c8b6027..e832e159c2 100644 --- a/md/GO/48/GO_0016048.md +++ b/md/GO/48/GO_0016048.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0031348.md b/md/GO/48/GO_0031348.md index 2ad9f2ec40..b3a8071686 100644 --- a/md/GO/48/GO_0031348.md +++ b/md/GO/48/GO_0031348.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [defense response](../../GO/52/GO_0006952.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0035148.md b/md/GO/48/GO_0035148.md index e696db1d49..9e01ef63ca 100644 --- a/md/GO/48/GO_0035148.md +++ b/md/GO/48/GO_0035148.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0042048.md b/md/GO/48/GO_0042048.md index 2eb7e0172e..3af441ba04 100644 --- a/md/GO/48/GO_0042048.md +++ b/md/GO/48/GO_0042048.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0042748.md b/md/GO/48/GO_0042748.md index 7991fdc26f..908123c9a3 100644 --- a/md/GO/48/GO_0042748.md +++ b/md/GO/48/GO_0042748.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0051048.md b/md/GO/48/GO_0051048.md index b394b7180a..a6865fd36a 100644 --- a/md/GO/48/GO_0051048.md +++ b/md/GO/48/GO_0051048.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [secretion](../../GO/03/GO_0046903.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0060048.md b/md/GO/48/GO_0060048.md index 224cc41802..92a421d553 100644 --- a/md/GO/48/GO_0060048.md +++ b/md/GO/48/GO_0060048.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0060348.md b/md/GO/48/GO_0060348.md index 5cfb99e3ec..d8be285342 100644 --- a/md/GO/48/GO_0060348.md +++ b/md/GO/48/GO_0060348.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/48/GO_0061448.md b/md/GO/48/GO_0061448.md index b0b9dbbbf0..cc23159495 100644 --- a/md/GO/48/GO_0061448.md +++ b/md/GO/48/GO_0061448.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0007049.md b/md/GO/49/GO_0007049.md index 53e1d0c91f..2af6b324cf 100644 --- a/md/GO/49/GO_0007049.md +++ b/md/GO/49/GO_0007049.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0016049.md b/md/GO/49/GO_0016049.md index fe00741e79..3c65c25d5b 100644 --- a/md/GO/49/GO_0016049.md +++ b/md/GO/49/GO_0016049.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0042749.md b/md/GO/49/GO_0042749.md index 8c43d9efef..8c1358b92c 100644 --- a/md/GO/49/GO_0042749.md +++ b/md/GO/49/GO_0042749.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [circadian sleep/wake cycle](../../GO/45/GO_0042745.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0044249.md b/md/GO/49/GO_0044249.md index e62844b4e6..767655346e 100644 --- a/md/GO/49/GO_0044249.md +++ b/md/GO/49/GO_0044249.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0046649.md b/md/GO/49/GO_0046649.md index 03b1593cec..aeaa02feca 100644 --- a/md/GO/49/GO_0046649.md +++ b/md/GO/49/GO_0046649.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0051049.md b/md/GO/49/GO_0051049.md index 42b9f18e77..7e802d5fec 100644 --- a/md/GO/49/GO_0051049.md +++ b/md/GO/49/GO_0051049.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [transport](../../GO/10/GO_0006810.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0051249.md b/md/GO/49/GO_0051249.md index c312e5f501..f59a8bb39d 100644 --- a/md/GO/49/GO_0051249.md +++ b/md/GO/49/GO_0051249.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lymphocyte activation](../../GO/49/GO_0046649.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0051649.md b/md/GO/49/GO_0051649.md index 97d8f0476e..527f45622e 100644 --- a/md/GO/49/GO_0051649.md +++ b/md/GO/49/GO_0051649.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [establishment of localization](../../GO/34/GO_0051234.md) and [occurs in](../../BFO/66/BFO_0000066.md) some [cell](../../GO/23/GO_0005623.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/49/GO_0060349.md b/md/GO/49/GO_0060349.md index 111a91c5c6..55793b0097 100644 --- a/md/GO/49/GO_0060349.md +++ b/md/GO/49/GO_0060349.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0001750.md b/md/GO/50/GO_0001750.md index df68dec59d..7936d81bb4 100644 --- a/md/GO/50/GO_0001750.md +++ b/md/GO/50/GO_0001750.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0006950.md b/md/GO/50/GO_0006950.md index 6400fa0667..c7983d389b 100644 --- a/md/GO/50/GO_0006950.md +++ b/md/GO/50/GO_0006950.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0008150.md b/md/GO/50/GO_0008150.md index 301d519218..b77da72b93 100644 --- a/md/GO/50/GO_0008150.md +++ b/md/GO/50/GO_0008150.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0015850.md b/md/GO/50/GO_0015850.md index e575d52a49..499092241b 100644 --- a/md/GO/50/GO_0015850.md +++ b/md/GO/50/GO_0015850.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0032350.md b/md/GO/50/GO_0032350.md index 8c2f280893..43498c8c0c 100644 --- a/md/GO/50/GO_0032350.md +++ b/md/GO/50/GO_0032350.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [hormone metabolic process](../../GO/45/GO_0042445.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0051250.md b/md/GO/50/GO_0051250.md index 4995484a4e..36df72aa8b 100644 --- a/md/GO/50/GO_0051250.md +++ b/md/GO/50/GO_0051250.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lymphocyte activation](../../GO/49/GO_0046649.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/50/GO_0060350.md b/md/GO/50/GO_0060350.md index c840e32c7b..85f4227cd5 100644 --- a/md/GO/50/GO_0060350.md +++ b/md/GO/50/GO_0060350.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0002251.md b/md/GO/51/GO_0002251.md index 8eda61e55b..c7882f44d1 100644 --- a/md/GO/51/GO_0002251.md +++ b/md/GO/51/GO_0002251.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0002351.md b/md/GO/51/GO_0002351.md index eb2a903512..cdbced7a4b 100644 --- a/md/GO/51/GO_0002351.md +++ b/md/GO/51/GO_0002351.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0023051.md b/md/GO/51/GO_0023051.md index 43130e905b..7088716f9c 100644 --- a/md/GO/51/GO_0023051.md +++ b/md/GO/51/GO_0023051.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [signaling](../../GO/52/GO_0023052.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0032351.md b/md/GO/51/GO_0032351.md index 2f924a06f0..db077ae073 100644 --- a/md/GO/51/GO_0032351.md +++ b/md/GO/51/GO_0032351.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [hormone metabolic process](../../GO/45/GO_0042445.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0046651.md b/md/GO/51/GO_0046651.md index addc9cb509..54a8391ed6 100644 --- a/md/GO/51/GO_0046651.md +++ b/md/GO/51/GO_0046651.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0050951.md b/md/GO/51/GO_0050951.md index 1739e4afbb..ef685a2109 100644 --- a/md/GO/51/GO_0050951.md +++ b/md/GO/51/GO_0050951.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0051051.md b/md/GO/51/GO_0051051.md index e19e27e5bb..c3fb566cae 100644 --- a/md/GO/51/GO_0051051.md +++ b/md/GO/51/GO_0051051.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [transport](../../GO/10/GO_0006810.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0060351.md b/md/GO/51/GO_0060351.md index a68965883d..05062d3635 100644 --- a/md/GO/51/GO_0060351.md +++ b/md/GO/51/GO_0060351.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage development](../../GO/16/GO_0051216.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endochondral bone morphogenesis](../../GO/50/GO_0060350.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_0070451.md b/md/GO/51/GO_0070451.md index bdcacf02f4..055e8aedf2 100644 --- a/md/GO/51/GO_0070451.md +++ b/md/GO/51/GO_0070451.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/51/GO_2001151.md b/md/GO/51/GO_2001151.md index e6f7f91df1..3a5fef5e8d 100644 --- a/md/GO/51/GO_2001151.md +++ b/md/GO/51/GO_2001151.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [renal water transport](../../GO/97/GO_0003097.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0002252.md b/md/GO/52/GO_0002252.md index 59f00de3c3..ff82f9fa0c 100644 --- a/md/GO/52/GO_0002252.md +++ b/md/GO/52/GO_0002252.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0006952.md b/md/GO/52/GO_0006952.md index 60f92a6e63..a61a7e1cf5 100644 --- a/md/GO/52/GO_0006952.md +++ b/md/GO/52/GO_0006952.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0008152.md b/md/GO/52/GO_0008152.md index aed4aa87a3..0c9128635e 100644 --- a/md/GO/52/GO_0008152.md +++ b/md/GO/52/GO_0008152.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0019752.md b/md/GO/52/GO_0019752.md index 9ffbd0a96a..2e1c2f04bd 100644 --- a/md/GO/52/GO_0019752.md +++ b/md/GO/52/GO_0019752.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0023052.md b/md/GO/52/GO_0023052.md index d881371a94..782d3b7930 100644 --- a/md/GO/52/GO_0023052.md +++ b/md/GO/52/GO_0023052.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0042752.md b/md/GO/52/GO_0042752.md index 80f72f44ea..3f55d1bb10 100644 --- a/md/GO/52/GO_0042752.md +++ b/md/GO/52/GO_0042752.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [circadian rhythm](../../GO/23/GO_0007623.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0050952.md b/md/GO/52/GO_0050952.md index 5ed3ca9522..a2cf008ba3 100644 --- a/md/GO/52/GO_0050952.md +++ b/md/GO/52/GO_0050952.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_0051952.md b/md/GO/52/GO_0051952.md index 6333376c6f..b282c1b16c 100644 --- a/md/GO/52/GO_0051952.md +++ b/md/GO/52/GO_0051952.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [amine transport](../../GO/37/GO_0015837.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_2000252.md b/md/GO/52/GO_2000252.md index 36a01f6deb..e593dc9d3e 100644 --- a/md/GO/52/GO_2000252.md +++ b/md/GO/52/GO_2000252.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [feeding behavior](../../GO/31/GO_0007631.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/52/GO_2001152.md b/md/GO/52/GO_2001152.md index 46d86ac57c..4b7ccd4cc6 100644 --- a/md/GO/52/GO_2001152.md +++ b/md/GO/52/GO_2001152.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [renal water transport](../../GO/97/GO_0003097.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0001553.md b/md/GO/53/GO_0001553.md index f0d4507395..30941e40f7 100644 --- a/md/GO/53/GO_0001553.md +++ b/md/GO/53/GO_0001553.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0009653.md b/md/GO/53/GO_0009653.md index 33f7f3694c..6a1ea03741 100644 --- a/md/GO/53/GO_0009653.md +++ b/md/GO/53/GO_0009653.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0019953.md b/md/GO/53/GO_0019953.md index d45f65740e..21a13ca71c 100644 --- a/md/GO/53/GO_0019953.md +++ b/md/GO/53/GO_0019953.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0032353.md b/md/GO/53/GO_0032353.md index 81a0a016fb..f78682c782 100644 --- a/md/GO/53/GO_0032353.md +++ b/md/GO/53/GO_0032353.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [hormone biosynthetic process](../../GO/46/GO_0042446.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0050953.md b/md/GO/53/GO_0050953.md index 0caf31c929..9b8f1b9c80 100644 --- a/md/GO/53/GO_0050953.md +++ b/md/GO/53/GO_0050953.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0051953.md b/md/GO/53/GO_0051953.md index a98cd84ef0..8fe4537919 100644 --- a/md/GO/53/GO_0051953.md +++ b/md/GO/53/GO_0051953.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [amine transport](../../GO/37/GO_0015837.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0060053.md b/md/GO/53/GO_0060053.md index 6312520280..e0b1827e3c 100644 --- a/md/GO/53/GO_0060053.md +++ b/md/GO/53/GO_0060053.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0060453.md b/md/GO/53/GO_0060453.md index dad25298dd..cbbabd5bfc 100644 --- a/md/GO/53/GO_0060453.md +++ b/md/GO/53/GO_0060453.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [gastric acid secretion](../../GO/96/GO_0001696.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0070253.md b/md/GO/53/GO_0070253.md index 622bb49211..da4c8ae335 100644 --- a/md/GO/53/GO_0070253.md +++ b/md/GO/53/GO_0070253.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/53/GO_0071953.md b/md/GO/53/GO_0071953.md index d6e2fcf8a4..52841824c2 100644 --- a/md/GO/53/GO_0071953.md +++ b/md/GO/53/GO_0071953.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0006954.md b/md/GO/54/GO_0006954.md index 4bb62f5c54..4c07ca95ed 100644 --- a/md/GO/54/GO_0006954.md +++ b/md/GO/54/GO_0006954.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0007154.md b/md/GO/54/GO_0007154.md index c09c898d55..7ee115cff8 100644 --- a/md/GO/54/GO_0007154.md +++ b/md/GO/54/GO_0007154.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0030054.md b/md/GO/54/GO_0030054.md index 4c8bbdb68d..35835625c1 100644 --- a/md/GO/54/GO_0030054.md +++ b/md/GO/54/GO_0030054.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0030154.md b/md/GO/54/GO_0030154.md index 98c4cde2aa..bf356f1524 100644 --- a/md/GO/54/GO_0030154.md +++ b/md/GO/54/GO_0030154.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0033554.md b/md/GO/54/GO_0033554.md index f17f16098d..d7d3c119a3 100644 --- a/md/GO/54/GO_0033554.md +++ b/md/GO/54/GO_0033554.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0034754.md b/md/GO/54/GO_0034754.md index bc4109372e..2da02a3364 100644 --- a/md/GO/54/GO_0034754.md +++ b/md/GO/54/GO_0034754.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0042754.md b/md/GO/54/GO_0042754.md index f966600e5a..71c7135efc 100644 --- a/md/GO/54/GO_0042754.md +++ b/md/GO/54/GO_0042754.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [circadian rhythm](../../GO/23/GO_0007623.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0048754.md b/md/GO/54/GO_0048754.md index 046df2e32f..df3e316973 100644 --- a/md/GO/54/GO_0048754.md +++ b/md/GO/54/GO_0048754.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0050954.md b/md/GO/54/GO_0050954.md index 8a1aa2cf82..f64175bc9b 100644 --- a/md/GO/54/GO_0050954.md +++ b/md/GO/54/GO_0050954.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/54/GO_0070254.md b/md/GO/54/GO_0070254.md index c96bc6fb78..7290a40b8f 100644 --- a/md/GO/54/GO_0070254.md +++ b/md/GO/54/GO_0070254.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0006955.md b/md/GO/55/GO_0006955.md index 8cbda3b2d8..0049f06adf 100644 --- a/md/GO/55/GO_0006955.md +++ b/md/GO/55/GO_0006955.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0008355.md b/md/GO/55/GO_0008355.md index b271674382..457d440ed3 100644 --- a/md/GO/55/GO_0008355.md +++ b/md/GO/55/GO_0008355.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0030855.md b/md/GO/55/GO_0030855.md index 94bea4b1ef..4f8044049c 100644 --- a/md/GO/55/GO_0030855.md +++ b/md/GO/55/GO_0030855.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0051055.md b/md/GO/55/GO_0051055.md index 59c1d7ca82..177cbb225e 100644 --- a/md/GO/55/GO_0051055.md +++ b/md/GO/55/GO_0051055.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lipid biosynthetic process](../../GO/10/GO_0008610.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0051355.md b/md/GO/55/GO_0051355.md index a3c10da02b..b5b91cc3d1 100644 --- a/md/GO/55/GO_0051355.md +++ b/md/GO/55/GO_0051355.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [equilibrioception](../../GO/57/GO_0050957.md) and [proprioception](../../GO/30/GO_0019230.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0060055.md b/md/GO/55/GO_0060055.md index 4c558378c4..be702e716a 100644 --- a/md/GO/55/GO_0060055.md +++ b/md/GO/55/GO_0060055.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [angiogenesis](../../GO/25/GO_0001525.md) and [part_of](../../BFO/50/BFO_0000050.md) some [wound healing](../../GO/60/GO_0042060.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0060255.md b/md/GO/55/GO_0060255.md index 9ff4878d56..d59e0e288d 100644 --- a/md/GO/55/GO_0060255.md +++ b/md/GO/55/GO_0060255.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [macromolecule metabolic process](../../GO/70/GO_0043170.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0060455.md b/md/GO/55/GO_0060455.md index 9bed762aed..c7a39cf30c 100644 --- a/md/GO/55/GO_0060455.md +++ b/md/GO/55/GO_0060455.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [gastric acid secretion](../../GO/96/GO_0001696.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/55/GO_0070255.md b/md/GO/55/GO_0070255.md index e66f3ea143..62ee87648c 100644 --- a/md/GO/55/GO_0070255.md +++ b/md/GO/55/GO_0070255.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [mucus secretion](../../GO/54/GO_0070254.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0005856.md b/md/GO/56/GO_0005856.md index 688ea41f34..16bdbf967f 100644 --- a/md/GO/56/GO_0005856.md +++ b/md/GO/56/GO_0005856.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0010556.md b/md/GO/56/GO_0010556.md index 1ad7417a57..a77fb58100 100644 --- a/md/GO/56/GO_0010556.md +++ b/md/GO/56/GO_0010556.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [macromolecule biosynthetic process](../../GO/59/GO_0009059.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0030856.md b/md/GO/56/GO_0030856.md index 8b3ce50886..7ebcfedb7b 100644 --- a/md/GO/56/GO_0030856.md +++ b/md/GO/56/GO_0030856.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [epithelial cell differentiation](../../GO/55/GO_0030855.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0035556.md b/md/GO/56/GO_0035556.md index fda74ad62d..fb8301e4a0 100644 --- a/md/GO/56/GO_0035556.md +++ b/md/GO/56/GO_0035556.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occurs in](../../BFO/66/BFO_0000066.md) some [intracellular](../../GO/22/GO_0005622.md) and [signal transduction](../../GO/65/GO_0007165.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0048856.md b/md/GO/56/GO_0048856.md index 3905f31276..8d1753461c 100644 --- a/md/GO/56/GO_0048856.md +++ b/md/GO/56/GO_0048856.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0050956.md b/md/GO/56/GO_0050956.md index ccc4cc65ed..c220811b8a 100644 --- a/md/GO/56/GO_0050956.md +++ b/md/GO/56/GO_0050956.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0051356.md b/md/GO/56/GO_0051356.md index f2f538c74a..5d2a9b761e 100644 --- a/md/GO/56/GO_0051356.md +++ b/md/GO/56/GO_0051356.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [equilibrioception](../../GO/57/GO_0050957.md) and [visual perception](../../GO/01/GO_0007601.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/56/GO_0070256.md b/md/GO/56/GO_0070256.md index 386e712b6b..fbf63adc65 100644 --- a/md/GO/56/GO_0070256.md +++ b/md/GO/56/GO_0070256.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [mucus secretion](../../GO/54/GO_0070254.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0001957.md b/md/GO/57/GO_0001957.md index 473a4e96f8..965961f286 100644 --- a/md/GO/57/GO_0001957.md +++ b/md/GO/57/GO_0001957.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0017157.md b/md/GO/57/GO_0017157.md index bccd87f01d..a47e3163c0 100644 --- a/md/GO/57/GO_0017157.md +++ b/md/GO/57/GO_0017157.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [exocytosis](../../GO/87/GO_0006887.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0023057.md b/md/GO/57/GO_0023057.md index d8d01ffc1d..f56058a26f 100644 --- a/md/GO/57/GO_0023057.md +++ b/md/GO/57/GO_0023057.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [signaling](../../GO/52/GO_0023052.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0030857.md b/md/GO/57/GO_0030857.md index dfe76cbb2f..f18db05ac3 100644 --- a/md/GO/57/GO_0030857.md +++ b/md/GO/57/GO_0030857.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [epithelial cell differentiation](../../GO/55/GO_0030855.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0044057.md b/md/GO/57/GO_0044057.md index e19c421fb6..0e5d2f7137 100644 --- a/md/GO/57/GO_0044057.md +++ b/md/GO/57/GO_0044057.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [system process](../../GO/08/GO_0003008.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0050957.md b/md/GO/57/GO_0050957.md index 06f7057a0a..41e697bf5d 100644 --- a/md/GO/57/GO_0050957.md +++ b/md/GO/57/GO_0050957.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0060457.md b/md/GO/57/GO_0060457.md index 0e1589c4c1..f62f9f3062 100644 --- a/md/GO/57/GO_0060457.md +++ b/md/GO/57/GO_0060457.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [digestive system process](../../GO/00/GO_0022600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/57/GO_0090257.md b/md/GO/57/GO_0090257.md index 6a6a16576a..dd82aca3e5 100644 --- a/md/GO/57/GO_0090257.md +++ b/md/GO/57/GO_0090257.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [muscle system process](../../GO/12/GO_0003012.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0001558.md b/md/GO/58/GO_0001558.md index e49e79407f..c4bc23c247 100644 --- a/md/GO/58/GO_0001558.md +++ b/md/GO/58/GO_0001558.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell growth](../../GO/49/GO_0016049.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0001958.md b/md/GO/58/GO_0001958.md index 918e2acc9d..e5ca1824c1 100644 --- a/md/GO/58/GO_0001958.md +++ b/md/GO/58/GO_0001958.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0006858.md b/md/GO/58/GO_0006858.md index aa3c634668..8cf1ab0756 100644 --- a/md/GO/58/GO_0006858.md +++ b/md/GO/58/GO_0006858.md @@ -19,7 +19,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occurs in](../../BFO/66/BFO_0000066.md) some [extracellular region](../../GO/76/GO_0005576.md) and [transport](../../GO/10/GO_0006810.md) ## Other Logical Axioms @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0007558.md b/md/GO/58/GO_0007558.md index da77c32a36..9492c21148 100644 --- a/md/GO/58/GO_0007558.md +++ b/md/GO/58/GO_0007558.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [juvenile hormone secretion](../../GO/43/GO_0045443.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0009058.md b/md/GO/58/GO_0009058.md index 694e4e06d7..b93e1b8092 100644 --- a/md/GO/58/GO_0009058.md +++ b/md/GO/58/GO_0009058.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0010558.md b/md/GO/58/GO_0010558.md index c5a66bf909..0041554014 100644 --- a/md/GO/58/GO_0010558.md +++ b/md/GO/58/GO_0010558.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [macromolecule biosynthetic process](../../GO/59/GO_0009059.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0018958.md b/md/GO/58/GO_0018958.md index 8a68e8b93b..7938296285 100644 --- a/md/GO/58/GO_0018958.md +++ b/md/GO/58/GO_0018958.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0044058.md b/md/GO/58/GO_0044058.md index f5c405b51e..28331934c6 100644 --- a/md/GO/58/GO_0044058.md +++ b/md/GO/58/GO_0044058.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [digestive system process](../../GO/00/GO_0022600.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0045058.md b/md/GO/58/GO_0045058.md index 15adc68a73..b4f1fefe26 100644 --- a/md/GO/58/GO_0045058.md +++ b/md/GO/58/GO_0045058.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0061458.md b/md/GO/58/GO_0061458.md index f72b4b5626..0a701dac61 100644 --- a/md/GO/58/GO_0061458.md +++ b/md/GO/58/GO_0061458.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0072358.md b/md/GO/58/GO_0072358.md index 7bebe49d7a..9ee4c4ff88 100644 --- a/md/GO/58/GO_0072358.md +++ b/md/GO/58/GO_0072358.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/58/GO_0097458.md b/md/GO/58/GO_0097458.md index 8a7bcb4cfa..82c27b7e2e 100644 --- a/md/GO/58/GO_0097458.md +++ b/md/GO/58/GO_0097458.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/59/GO_0001659.md b/md/GO/59/GO_0001659.md index 6152db255e..97941490e3 100644 --- a/md/GO/59/GO_0001659.md +++ b/md/GO/59/GO_0001659.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/59/GO_0009059.md b/md/GO/59/GO_0009059.md index 23a242b684..7fc838fed5 100644 --- a/md/GO/59/GO_0009059.md +++ b/md/GO/59/GO_0009059.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/59/GO_0050959.md b/md/GO/59/GO_0050959.md index 4c08ab2324..91e154bc4e 100644 --- a/md/GO/59/GO_0050959.md +++ b/md/GO/59/GO_0050959.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/59/GO_0060259.md b/md/GO/59/GO_0060259.md index c59efb917f..7881a1c389 100644 --- a/md/GO/59/GO_0060259.md +++ b/md/GO/59/GO_0060259.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [feeding behavior](../../GO/31/GO_0007631.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/59/GO_0072359.md b/md/GO/59/GO_0072359.md index 262426678d..bb43ac1fc5 100644 --- a/md/GO/59/GO_0072359.md +++ b/md/GO/59/GO_0072359.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_0042060.md b/md/GO/60/GO_0042060.md index 41227a3415..6a339cd608 100644 --- a/md/GO/60/GO_0042060.md +++ b/md/GO/60/GO_0042060.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_0044060.md b/md/GO/60/GO_0044060.md index 4300602fd9..623500aa59 100644 --- a/md/GO/60/GO_0044060.md +++ b/md/GO/60/GO_0044060.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [endocrine process](../../GO/86/GO_0050886.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_0046660.md b/md/GO/60/GO_0046660.md index 1a71f003dd..48a19eccc9 100644 --- a/md/GO/60/GO_0046660.md +++ b/md/GO/60/GO_0046660.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_0051960.md b/md/GO/60/GO_0051960.md index 031ded6d14..6163f534f5 100644 --- a/md/GO/60/GO_0051960.md +++ b/md/GO/60/GO_0051960.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [nervous system development](../../GO/99/GO_0007399.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_0060560.md b/md/GO/60/GO_0060560.md index 3b1577088a..a03c871211 100644 --- a/md/GO/60/GO_0060560.md +++ b/md/GO/60/GO_0060560.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developmental growth](../../GO/89/GO_0048589.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anatomical structure morphogenesis](../../GO/53/GO_0009653.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/60/GO_1901360.md b/md/GO/60/GO_1901360.md index 9560490602..ae226f3310 100644 --- a/md/GO/60/GO_1901360.md +++ b/md/GO/60/GO_1901360.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0014061.md b/md/GO/61/GO_0014061.md index 463d32302f..b02956a435 100644 --- a/md/GO/61/GO_0014061.md +++ b/md/GO/61/GO_0014061.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [norepinephrine secretion](../../GO/43/GO_0048243.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0023061.md b/md/GO/61/GO_0023061.md index fcc9e17f56..a5c2c7dc53 100644 --- a/md/GO/61/GO_0023061.md +++ b/md/GO/61/GO_0023061.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0036161.md b/md/GO/61/GO_0036161.md index 3572507a79..26971de02d 100644 --- a/md/GO/61/GO_0036161.md +++ b/md/GO/61/GO_0036161.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0050961.md b/md/GO/61/GO_0050961.md index c7056dc485..08cb88ca49 100644 --- a/md/GO/61/GO_0050961.md +++ b/md/GO/61/GO_0050961.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of temperature stimulus](../../GO/48/GO_0016048.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0051961.md b/md/GO/61/GO_0051961.md index feec0f56f8..ec9e26ce0e 100644 --- a/md/GO/61/GO_0051961.md +++ b/md/GO/61/GO_0051961.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [nervous system development](../../GO/99/GO_0007399.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0060361.md b/md/GO/61/GO_0060361.md index 9e0993ca20..fbcbd03921 100644 --- a/md/GO/61/GO_0060361.md +++ b/md/GO/61/GO_0060361.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/61/GO_0070661.md b/md/GO/61/GO_0070661.md index 4ec1181c6a..ce0cc5561f 100644 --- a/md/GO/61/GO_0070661.md +++ b/md/GO/61/GO_0070661.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0002062.md b/md/GO/62/GO_0002062.md index ab7ade7e6e..c1fd2848fe 100644 --- a/md/GO/62/GO_0002062.md +++ b/md/GO/62/GO_0002062.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0014062.md b/md/GO/62/GO_0014062.md index f156c97041..3314d75ee3 100644 --- a/md/GO/62/GO_0014062.md +++ b/md/GO/62/GO_0014062.md @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [serotonin secretion](../../GO/20/GO_0001820.md) ## Other Logical Axioms @@ -32,5 +32,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0043062.md b/md/GO/62/GO_0043062.md index d495530b7f..96019cc347 100644 --- a/md/GO/62/GO_0043062.md +++ b/md/GO/62/GO_0043062.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0044062.md b/md/GO/62/GO_0044062.md index ba3e79eb70..9971ea02fd 100644 --- a/md/GO/62/GO_0044062.md +++ b/md/GO/62/GO_0044062.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [excretion](../../GO/88/GO_0007588.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0050962.md b/md/GO/62/GO_0050962.md index 327219ec43..fef4b66768 100644 --- a/md/GO/62/GO_0050962.md +++ b/md/GO/62/GO_0050962.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of light stimulus](../../GO/83/GO_0009583.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0060562.md b/md/GO/62/GO_0060562.md index 57e61d64a8..2e96aa5e26 100644 --- a/md/GO/62/GO_0060562.md +++ b/md/GO/62/GO_0060562.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_0061062.md b/md/GO/62/GO_0061062.md index 6ecd4f968d..b0f5a7e742 100644 --- a/md/GO/62/GO_0061062.md +++ b/md/GO/62/GO_0061062.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [nematode larval development](../../GO/19/GO_0002119.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/62/GO_1901362.md b/md/GO/62/GO_1901362.md index 3518c6a836..272cfb06ff 100644 --- a/md/GO/62/GO_1901362.md +++ b/md/GO/62/GO_1901362.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0001763.md b/md/GO/63/GO_0001763.md index 309ca6106a..2351951509 100644 --- a/md/GO/63/GO_0001763.md +++ b/md/GO/63/GO_0001763.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0002063.md b/md/GO/63/GO_0002063.md index 9019784385..ea0d88b967 100644 --- a/md/GO/63/GO_0002063.md +++ b/md/GO/63/GO_0002063.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0002263.md b/md/GO/63/GO_0002263.md index 21cbb5b2bc..f0b937191b 100644 --- a/md/GO/63/GO_0002263.md +++ b/md/GO/63/GO_0002263.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cell activation](../../GO/75/GO_0001775.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0010463.md b/md/GO/63/GO_0010463.md index f23493528d..d128609dec 100644 --- a/md/GO/63/GO_0010463.md +++ b/md/GO/63/GO_0010463.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0014063.md b/md/GO/63/GO_0014063.md index 34e4997c78..7e4e41e898 100644 --- a/md/GO/63/GO_0014063.md +++ b/md/GO/63/GO_0014063.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [serotonin secretion](../../GO/20/GO_0001820.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0044463.md b/md/GO/63/GO_0044463.md index 43c0c7aa04..52851cf020 100644 --- a/md/GO/63/GO_0044463.md +++ b/md/GO/63/GO_0044463.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cell projection](../../GO/95/GO_0042995.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0044763.md b/md/GO/63/GO_0044763.md index 9b37c19899..b7f886c581 100644 --- a/md/GO/63/GO_0044763.md +++ b/md/GO/63/GO_0044763.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0045763.md b/md/GO/63/GO_0045763.md index 8c0aeeded8..71105b3118 100644 --- a/md/GO/63/GO_0045763.md +++ b/md/GO/63/GO_0045763.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular amino acid metabolic process](../../GO/20/GO_0006520.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0050863.md b/md/GO/63/GO_0050863.md index f58d221625..90ac357202 100644 --- a/md/GO/63/GO_0050863.md +++ b/md/GO/63/GO_0050863.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [T cell activation](../../GO/10/GO_0042110.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0050963.md b/md/GO/63/GO_0050963.md index 2666de9027..ff73e4b812 100644 --- a/md/GO/63/GO_0050963.md +++ b/md/GO/63/GO_0050963.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of electrical stimulus](../../GO/81/GO_0050981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/63/GO_0070663.md b/md/GO/63/GO_0070663.md index e0e70ce129..9a8c240193 100644 --- a/md/GO/63/GO_0070663.md +++ b/md/GO/63/GO_0070663.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [leukocyte proliferation](../../GO/61/GO_0070661.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0002164.md b/md/GO/64/GO_0002164.md index bf8bd77132..a11c0b3804 100644 --- a/md/GO/64/GO_0002164.md +++ b/md/GO/64/GO_0002164.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0010464.md b/md/GO/64/GO_0010464.md index b071c79959..611ee09562 100644 --- a/md/GO/64/GO_0010464.md +++ b/md/GO/64/GO_0010464.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [mesenchymal cell proliferation](../../GO/63/GO_0010463.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0010564.md b/md/GO/64/GO_0010564.md index f28ee437bc..bc4b18777c 100644 --- a/md/GO/64/GO_0010564.md +++ b/md/GO/64/GO_0010564.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell cycle process](../../GO/02/GO_0022402.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0044464.md b/md/GO/64/GO_0044464.md index faa3c745af..6bb639a6b2 100644 --- a/md/GO/64/GO_0044464.md +++ b/md/GO/64/GO_0044464.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cell](../../GO/23/GO_0005623.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0046864.md b/md/GO/64/GO_0046864.md index 2b08bcb35e..c8914e6670 100644 --- a/md/GO/64/GO_0046864.md +++ b/md/GO/64/GO_0046864.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0050864.md b/md/GO/64/GO_0050864.md index eeae391848..c453858df7 100644 --- a/md/GO/64/GO_0050864.md +++ b/md/GO/64/GO_0050864.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [B cell activation](../../GO/13/GO_0042113.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0050964.md b/md/GO/64/GO_0050964.md index 8422bbcf96..611812d234 100644 --- a/md/GO/64/GO_0050964.md +++ b/md/GO/64/GO_0050964.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of electrical stimulus](../../GO/81/GO_0050981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [electroception](../../GO/56/GO_0050956.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0061064.md b/md/GO/64/GO_0061064.md index 884aff6912..f21f59a5ff 100644 --- a/md/GO/64/GO_0061064.md +++ b/md/GO/64/GO_0061064.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [nematode larval development](../../GO/19/GO_0002119.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_0070664.md b/md/GO/64/GO_0070664.md index 007ffd77e8..132fef2da9 100644 --- a/md/GO/64/GO_0070664.md +++ b/md/GO/64/GO_0070664.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [leukocyte proliferation](../../GO/61/GO_0070661.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/64/GO_1901564.md b/md/GO/64/GO_1901564.md index 25a586fc47..c210f5b283 100644 --- a/md/GO/64/GO_1901564.md +++ b/md/GO/64/GO_1901564.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0002165.md b/md/GO/65/GO_0002165.md index d1c0e58671..4b71631e82 100644 --- a/md/GO/65/GO_0002165.md +++ b/md/GO/65/GO_0002165.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0007165.md b/md/GO/65/GO_0007165.md index 3016cf5db2..7f0c5a9068 100644 --- a/md/GO/65/GO_0007165.md +++ b/md/GO/65/GO_0007165.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0007565.md b/md/GO/65/GO_0007565.md index f40ce2e5ac..f0ec2d6ffe 100644 --- a/md/GO/65/GO_0007565.md +++ b/md/GO/65/GO_0007565.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0010565.md b/md/GO/65/GO_0010565.md index 90fe046844..f361a76d64 100644 --- a/md/GO/65/GO_0010565.md +++ b/md/GO/65/GO_0010565.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular ketone metabolic process](../../GO/80/GO_0042180.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0016265.md b/md/GO/65/GO_0016265.md index e8c4a5f190..1c10dc2af2 100644 --- a/md/GO/65/GO_0016265.md +++ b/md/GO/65/GO_0016265.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0032365.md b/md/GO/65/GO_0032365.md index 948163a159..502bb6830b 100644 --- a/md/GO/65/GO_0032365.md +++ b/md/GO/65/GO_0032365.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lipid transport](../../GO/69/GO_0006869.md) and [occurs in](../../BFO/66/BFO_0000066.md) some [intracellular](../../GO/22/GO_0005622.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0044765.md b/md/GO/65/GO_0044765.md index dbf5a6a36a..7c17dd7519 100644 --- a/md/GO/65/GO_0044765.md +++ b/md/GO/65/GO_0044765.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0045765.md b/md/GO/65/GO_0045765.md index a0a6489aac..bbfce6cf80 100644 --- a/md/GO/65/GO_0045765.md +++ b/md/GO/65/GO_0045765.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [angiogenesis](../../GO/25/GO_0001525.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0046865.md b/md/GO/65/GO_0046865.md index a9e9154e2c..9f3c44af2e 100644 --- a/md/GO/65/GO_0046865.md +++ b/md/GO/65/GO_0046865.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0050865.md b/md/GO/65/GO_0050865.md index 3abec16eb8..d4bf37ccfb 100644 --- a/md/GO/65/GO_0050865.md +++ b/md/GO/65/GO_0050865.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell activation](../../GO/75/GO_0001775.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0050965.md b/md/GO/65/GO_0050965.md index f480e55ee4..0d8c8dfabe 100644 --- a/md/GO/65/GO_0050965.md +++ b/md/GO/65/GO_0050965.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of temperature stimulus](../../GO/48/GO_0016048.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of pain](../../GO/33/GO_0019233.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/65/GO_0055065.md b/md/GO/65/GO_0055065.md index e979d08dbc..88b1a7eb3e 100644 --- a/md/GO/65/GO_0055065.md +++ b/md/GO/65/GO_0055065.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0002366.md b/md/GO/66/GO_0002366.md index 543bc6bedc..a32190909f 100644 --- a/md/GO/66/GO_0002366.md +++ b/md/GO/66/GO_0002366.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [leukocyte activation](../../GO/21/GO_0045321.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0007166.md b/md/GO/66/GO_0007166.md index ba46f7ae06..48072ed4cd 100644 --- a/md/GO/66/GO_0007166.md +++ b/md/GO/66/GO_0007166.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0009266.md b/md/GO/66/GO_0009266.md index 7b004e02f2..a54961eb05 100644 --- a/md/GO/66/GO_0009266.md +++ b/md/GO/66/GO_0009266.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0009966.md b/md/GO/66/GO_0009966.md index 2f93ba3716..14e3e5e043 100644 --- a/md/GO/66/GO_0009966.md +++ b/md/GO/66/GO_0009966.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [signal transduction](../../GO/65/GO_0007165.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0050866.md b/md/GO/66/GO_0050866.md index a254ca9ba8..8eeb12a355 100644 --- a/md/GO/66/GO_0050866.md +++ b/md/GO/66/GO_0050866.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell activation](../../GO/75/GO_0001775.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_0050966.md b/md/GO/66/GO_0050966.md index 8dfcee5c2c..ff2e2429fc 100644 --- a/md/GO/66/GO_0050966.md +++ b/md/GO/66/GO_0050966.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of mechanical stimulus](../../GO/82/GO_0050982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of pain](../../GO/33/GO_0019233.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/66/GO_1901566.md b/md/GO/66/GO_1901566.md index 81dfbf5625..7f96f9771e 100644 --- a/md/GO/66/GO_1901566.md +++ b/md/GO/66/GO_1901566.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0001667.md b/md/GO/67/GO_0001667.md index 6c0b01d599..eda841ad33 100644 --- a/md/GO/67/GO_0001667.md +++ b/md/GO/67/GO_0001667.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0007267.md b/md/GO/67/GO_0007267.md index 2130a8a81a..7b20b86cf8 100644 --- a/md/GO/67/GO_0007267.md +++ b/md/GO/67/GO_0007267.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0033267.md b/md/GO/67/GO_0033267.md index bf515f2e80..b040b251c4 100644 --- a/md/GO/67/GO_0033267.md +++ b/md/GO/67/GO_0033267.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cellular_component](../../GO/75/GO_0005575.md) and [part_of](../../BFO/50/BFO_0000050.md) some [axon](../../GO/24/GO_0030424.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0044767.md b/md/GO/67/GO_0044767.md index 9bd21dc7c2..b51efa5b50 100644 --- a/md/GO/67/GO_0044767.md +++ b/md/GO/67/GO_0044767.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0050767.md b/md/GO/67/GO_0050767.md index 30dd4d0d37..c6731076be 100644 --- a/md/GO/67/GO_0050767.md +++ b/md/GO/67/GO_0050767.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [neurogenesis](../../GO/08/GO_0022008.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0050967.md b/md/GO/67/GO_0050967.md index b405beca05..a697a0a249 100644 --- a/md/GO/67/GO_0050967.md +++ b/md/GO/67/GO_0050967.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of electrical stimulus](../../GO/81/GO_0050981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of pain](../../GO/33/GO_0019233.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0055067.md b/md/GO/67/GO_0055067.md index 2224002c28..38c85efba1 100644 --- a/md/GO/67/GO_0055067.md +++ b/md/GO/67/GO_0055067.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/67/GO_0070167.md b/md/GO/67/GO_0070167.md index 33983a8412..8b76aa5a23 100644 --- a/md/GO/67/GO_0070167.md +++ b/md/GO/67/GO_0070167.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [biomineral tissue development](../../GO/14/GO_0031214.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0001568.md b/md/GO/68/GO_0001568.md index b28e4a5341..ef4203dd2d 100644 --- a/md/GO/68/GO_0001568.md +++ b/md/GO/68/GO_0001568.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0002168.md b/md/GO/68/GO_0002168.md index 7b56e98f96..8f1249286c 100644 --- a/md/GO/68/GO_0002168.md +++ b/md/GO/68/GO_0002168.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0006968.md b/md/GO/68/GO_0006968.md index 636ad226dd..bb81d6a3f8 100644 --- a/md/GO/68/GO_0006968.md +++ b/md/GO/68/GO_0006968.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0009968.md b/md/GO/68/GO_0009968.md index aa93d3d7d5..f3dd4650aa 100644 --- a/md/GO/68/GO_0009968.md +++ b/md/GO/68/GO_0009968.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [signal transduction](../../GO/65/GO_0007165.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0032368.md b/md/GO/68/GO_0032368.md index cc2c2b953b..4be39f54d4 100644 --- a/md/GO/68/GO_0032368.md +++ b/md/GO/68/GO_0032368.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lipid transport](../../GO/69/GO_0006869.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0048468.md b/md/GO/68/GO_0048468.md index d287315d98..efe5a7742f 100644 --- a/md/GO/68/GO_0048468.md +++ b/md/GO/68/GO_0048468.md @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0050768.md b/md/GO/68/GO_0050768.md index 1c6bd9b99e..55b4a48a8d 100644 --- a/md/GO/68/GO_0050768.md +++ b/md/GO/68/GO_0050768.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [neurogenesis](../../GO/08/GO_0022008.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0050868.md b/md/GO/68/GO_0050868.md index de22b1680c..8be566d8bc 100644 --- a/md/GO/68/GO_0050868.md +++ b/md/GO/68/GO_0050868.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [T cell activation](../../GO/10/GO_0042110.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0050968.md b/md/GO/68/GO_0050968.md index e479048c33..39647f5562 100644 --- a/md/GO/68/GO_0050968.md +++ b/md/GO/68/GO_0050968.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of chemical stimulus](../../GO/93/GO_0009593.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception of pain](../../GO/33/GO_0019233.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/68/GO_0070168.md b/md/GO/68/GO_0070168.md index f0647002a1..60e6dd3957 100644 --- a/md/GO/68/GO_0070168.md +++ b/md/GO/68/GO_0070168.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [biomineral tissue development](../../GO/14/GO_0031214.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0002269.md b/md/GO/69/GO_0002269.md index e7ab91c73f..b905b8b93d 100644 --- a/md/GO/69/GO_0002269.md +++ b/md/GO/69/GO_0002269.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [leukocyte activation](../../GO/21/GO_0045321.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inflammatory response](../../GO/54/GO_0006954.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0006869.md b/md/GO/69/GO_0006869.md index a4cdac36a9..0279f4cd29 100644 --- a/md/GO/69/GO_0006869.md +++ b/md/GO/69/GO_0006869.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0007369.md b/md/GO/69/GO_0007369.md index 7031928c6e..749defcc8b 100644 --- a/md/GO/69/GO_0007369.md +++ b/md/GO/69/GO_0007369.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0010469.md b/md/GO/69/GO_0010469.md index 1530465f5d..4fb890f44c 100644 --- a/md/GO/69/GO_0010469.md +++ b/md/GO/69/GO_0010469.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [receptor activity](../../GO/72/GO_0004872.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0032369.md b/md/GO/69/GO_0032369.md index 67fb0d8b20..5180f6c835 100644 --- a/md/GO/69/GO_0032369.md +++ b/md/GO/69/GO_0032369.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lipid transport](../../GO/69/GO_0006869.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0043269.md b/md/GO/69/GO_0043269.md index 93c84a1fce..e6e8dbab48 100644 --- a/md/GO/69/GO_0043269.md +++ b/md/GO/69/GO_0043269.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [ion transport](../../GO/11/GO_0006811.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0048869.md b/md/GO/69/GO_0048869.md index 84eeabb899..6178529070 100644 --- a/md/GO/69/GO_0048869.md +++ b/md/GO/69/GO_0048869.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/69/GO_0050869.md b/md/GO/69/GO_0050869.md index d2cd39dbe1..105f4bd28d 100644 --- a/md/GO/69/GO_0050869.md +++ b/md/GO/69/GO_0050869.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [B cell activation](../../GO/13/GO_0042113.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0010470.md b/md/GO/70/GO_0010470.md index 39e7c3d6e6..e854b8f0cf 100644 --- a/md/GO/70/GO_0010470.md +++ b/md/GO/70/GO_0010470.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [gastrulation](../../GO/69/GO_0007369.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0043170.md b/md/GO/70/GO_0043170.md index a41a876f97..7241057550 100644 --- a/md/GO/70/GO_0043170.md +++ b/md/GO/70/GO_0043170.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0048770.md b/md/GO/70/GO_0048770.md index 1367bcde92..05617a5382 100644 --- a/md/GO/70/GO_0048770.md +++ b/md/GO/70/GO_0048770.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0048870.md b/md/GO/70/GO_0048870.md index ff5b9e95dc..21abb2456b 100644 --- a/md/GO/70/GO_0048870.md +++ b/md/GO/70/GO_0048870.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0050670.md b/md/GO/70/GO_0050670.md index f81e7384fc..afd377106b 100644 --- a/md/GO/70/GO_0050670.md +++ b/md/GO/70/GO_0050670.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lymphocyte proliferation](../../GO/51/GO_0046651.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_0051270.md b/md/GO/70/GO_0051270.md index 5e7e7dce34..276ccee771 100644 --- a/md/GO/70/GO_0051270.md +++ b/md/GO/70/GO_0051270.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular component movement](../../GO/28/GO_0006928.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_2000070.md b/md/GO/70/GO_2000070.md index b76e8276d9..10d60fed9d 100644 --- a/md/GO/70/GO_2000070.md +++ b/md/GO/70/GO_2000070.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [response to water deprivation](../../GO/14/GO_0009414.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/70/GO_2000870.md b/md/GO/70/GO_2000870.md index ff4fab06c3..8c10e73ffb 100644 --- a/md/GO/70/GO_2000870.md +++ b/md/GO/70/GO_2000870.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [progesterone secretion](../../GO/01/GO_0042701.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0003071.md b/md/GO/71/GO_0003071.md index b83f02a924..a14b8a8519 100644 --- a/md/GO/71/GO_0003071.md +++ b/md/GO/71/GO_0003071.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [regulation of systemic arterial blood pressure](../../GO/73/GO_0003073.md) and [renal system process](../../GO/14/GO_0003014.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0004871.md b/md/GO/71/GO_0004871.md index 0e3d7851d4..ffa6d24d90 100644 --- a/md/GO/71/GO_0004871.md +++ b/md/GO/71/GO_0004871.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0007271.md b/md/GO/71/GO_0007271.md index 85df47ba2c..551a907785 100644 --- a/md/GO/71/GO_0007271.md +++ b/md/GO/71/GO_0007271.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0043271.md b/md/GO/71/GO_0043271.md index 9b5bca1f3e..0c1ea20832 100644 --- a/md/GO/71/GO_0043271.md +++ b/md/GO/71/GO_0043271.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [ion transport](../../GO/11/GO_0006811.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0048871.md b/md/GO/71/GO_0048871.md index d99f783c62..4eb81cc323 100644 --- a/md/GO/71/GO_0048871.md +++ b/md/GO/71/GO_0048871.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0051171.md b/md/GO/71/GO_0051171.md index 121e32ed71..29d81d52d8 100644 --- a/md/GO/71/GO_0051171.md +++ b/md/GO/71/GO_0051171.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [nitrogen compound metabolic process](../../GO/07/GO_0006807.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_0051271.md b/md/GO/71/GO_0051271.md index c69a9da2f6..08e12620a2 100644 --- a/md/GO/71/GO_0051271.md +++ b/md/GO/71/GO_0051271.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cellular component movement](../../GO/28/GO_0006928.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/71/GO_2000871.md b/md/GO/71/GO_2000871.md index 2c44bdafbc..3bd569b60d 100644 --- a/md/GO/71/GO_2000871.md +++ b/md/GO/71/GO_2000871.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [progesterone secretion](../../GO/01/GO_0042701.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0004872.md b/md/GO/72/GO_0004872.md index b7e78f772a..6544bc85d6 100644 --- a/md/GO/72/GO_0004872.md +++ b/md/GO/72/GO_0004872.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0030072.md b/md/GO/72/GO_0030072.md index 25cd77457a..c30d2784d7 100644 --- a/md/GO/72/GO_0030072.md +++ b/md/GO/72/GO_0030072.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0036072.md b/md/GO/72/GO_0036072.md index 5e302cdfa6..c44302f2b4 100644 --- a/md/GO/72/GO_0036072.md +++ b/md/GO/72/GO_0036072.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0045972.md b/md/GO/72/GO_0045972.md index c35d024ee3..dc28602517 100644 --- a/md/GO/72/GO_0045972.md +++ b/md/GO/72/GO_0045972.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [juvenile hormone secretion](../../GO/43/GO_0045443.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0050672.md b/md/GO/72/GO_0050672.md index ece0a49c6c..59a2a51326 100644 --- a/md/GO/72/GO_0050672.md +++ b/md/GO/72/GO_0050672.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [lymphocyte proliferation](../../GO/51/GO_0046651.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0050972.md b/md/GO/72/GO_0050972.md index 6c1fa5240b..e226b058c0 100644 --- a/md/GO/72/GO_0050972.md +++ b/md/GO/72/GO_0050972.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of mechanical stimulus](../../GO/82/GO_0050982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [echolocation](../../GO/59/GO_0050959.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0051172.md b/md/GO/72/GO_0051172.md index 4c5ed3086b..2657432876 100644 --- a/md/GO/72/GO_0051172.md +++ b/md/GO/72/GO_0051172.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [nitrogen compound metabolic process](../../GO/07/GO_0006807.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_0072372.md b/md/GO/72/GO_0072372.md index c6d10f907c..cfd8d72deb 100644 --- a/md/GO/72/GO_0072372.md +++ b/md/GO/72/GO_0072372.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/72/GO_2000272.md b/md/GO/72/GO_2000272.md index c0e83fd385..62616ffa16 100644 --- a/md/GO/72/GO_2000272.md +++ b/md/GO/72/GO_2000272.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [receptor activity](../../GO/72/GO_0004872.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0003073.md b/md/GO/73/GO_0003073.md index 934e5d172b..69e73c33a1 100644 --- a/md/GO/73/GO_0003073.md +++ b/md/GO/73/GO_0003073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0030073.md b/md/GO/73/GO_0030073.md index bf8c80fd80..7d80469453 100644 --- a/md/GO/73/GO_0030073.md +++ b/md/GO/73/GO_0030073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0036073.md b/md/GO/73/GO_0036073.md index 7c538dc395..8bcbe1ed2d 100644 --- a/md/GO/73/GO_0036073.md +++ b/md/GO/73/GO_0036073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0050673.md b/md/GO/73/GO_0050673.md index a1165807df..9708475e93 100644 --- a/md/GO/73/GO_0050673.md +++ b/md/GO/73/GO_0050673.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0050973.md b/md/GO/73/GO_0050973.md index 74b558372c..af4afd49de 100644 --- a/md/GO/73/GO_0050973.md +++ b/md/GO/73/GO_0050973.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of mechanical stimulus](../../GO/82/GO_0050982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [equilibrioception](../../GO/57/GO_0050957.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0060073.md b/md/GO/73/GO_0060073.md index 90cf6af26b..f6fa528e7b 100644 --- a/md/GO/73/GO_0060073.md +++ b/md/GO/73/GO_0060073.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/73/GO_0090273.md b/md/GO/73/GO_0090273.md index c928a0bce7..d337f9d0af 100644 --- a/md/GO/73/GO_0090273.md +++ b/md/GO/73/GO_0090273.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [somatostatin secretion](../../GO/53/GO_0070253.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0003674.md b/md/GO/74/GO_0003674.md index cde32405b3..2abc417ef9 100644 --- a/md/GO/74/GO_0003674.md +++ b/md/GO/74/GO_0003674.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0015874.md b/md/GO/74/GO_0015874.md index 19dc55d1b5..f15e20d8e5 100644 --- a/md/GO/74/GO_0015874.md +++ b/md/GO/74/GO_0015874.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0042074.md b/md/GO/74/GO_0042074.md index 85bf2b61e5..cde3e557f7 100644 --- a/md/GO/74/GO_0042074.md +++ b/md/GO/74/GO_0042074.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cell migration](../../GO/77/GO_0016477.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastrulation](../../GO/69/GO_0007369.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0050974.md b/md/GO/74/GO_0050974.md index 949d77abe1..1c53037fbb 100644 --- a/md/GO/74/GO_0050974.md +++ b/md/GO/74/GO_0050974.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [detection of mechanical stimulus](../../GO/82/GO_0050982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sensory perception](../../GO/00/GO_0007600.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0051674.md b/md/GO/74/GO_0051674.md index af1541d117..c88e5f25f4 100644 --- a/md/GO/74/GO_0051674.md +++ b/md/GO/74/GO_0051674.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/74/GO_0055074.md b/md/GO/74/GO_0055074.md index 33443625d8..60c3d8c455 100644 --- a/md/GO/74/GO_0055074.md +++ b/md/GO/74/GO_0055074.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0001775.md b/md/GO/75/GO_0001775.md index 9fbeb23cd6..9e3fea1c97 100644 --- a/md/GO/75/GO_0001775.md +++ b/md/GO/75/GO_0001775.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0005575.md b/md/GO/75/GO_0005575.md index 3a2c4946df..f4a880c616 100644 --- a/md/GO/75/GO_0005575.md +++ b/md/GO/75/GO_0005575.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0006575.md b/md/GO/75/GO_0006575.md index df4bee8fd4..a4d0e3b6c9 100644 --- a/md/GO/75/GO_0006575.md +++ b/md/GO/75/GO_0006575.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0007275.md b/md/GO/75/GO_0007275.md index 93bda9bb50..d8ceb37cda 100644 --- a/md/GO/75/GO_0007275.md +++ b/md/GO/75/GO_0007275.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0036075.md b/md/GO/75/GO_0036075.md index 21cfd75032..d89617a587 100644 --- a/md/GO/75/GO_0036075.md +++ b/md/GO/75/GO_0036075.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0072175.md b/md/GO/75/GO_0072175.md index 4dce739233..4f095bb052 100644 --- a/md/GO/75/GO_0072175.md +++ b/md/GO/75/GO_0072175.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/75/GO_0090275.md b/md/GO/75/GO_0090275.md index 1cf1b31785..bac92f2efc 100644 --- a/md/GO/75/GO_0090275.md +++ b/md/GO/75/GO_0090275.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [somatostatin secretion](../../GO/53/GO_0070253.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0001976.md b/md/GO/76/GO_0001976.md index 6046b37122..2d8ca5a0f3 100644 --- a/md/GO/76/GO_0001976.md +++ b/md/GO/76/GO_0001976.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neurological system process](../../GO/77/GO_0050877.md) and [part_of](../../BFO/50/BFO_0000050.md) some [regulation of systemic arterial blood pressure](../../GO/73/GO_0003073.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0002376.md b/md/GO/76/GO_0002376.md index af8a3573f1..2311abc0f3 100644 --- a/md/GO/76/GO_0002376.md +++ b/md/GO/76/GO_0002376.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0005576.md b/md/GO/76/GO_0005576.md index 19ef82e5fc..b1216e9116 100644 --- a/md/GO/76/GO_0005576.md +++ b/md/GO/76/GO_0005576.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0007276.md b/md/GO/76/GO_0007276.md index 3de0c8f71e..5b7177be7e 100644 --- a/md/GO/76/GO_0007276.md +++ b/md/GO/76/GO_0007276.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0010876.md b/md/GO/76/GO_0010876.md index affbedc948..a355ebdc97 100644 --- a/md/GO/76/GO_0010876.md +++ b/md/GO/76/GO_0010876.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0043576.md b/md/GO/76/GO_0043576.md index 8a7681a8aa..bf1e91be7b 100644 --- a/md/GO/76/GO_0043576.md +++ b/md/GO/76/GO_0043576.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [respiratory gaseous exchange](../../GO/85/GO_0007585.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0046676.md b/md/GO/76/GO_0046676.md index 2ecfce82ad..3ad68a070f 100644 --- a/md/GO/76/GO_0046676.md +++ b/md/GO/76/GO_0046676.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [insulin secretion](../../GO/73/GO_0030073.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0050776.md b/md/GO/76/GO_0050776.md index 96930352a9..8c79eac855 100644 --- a/md/GO/76/GO_0050776.md +++ b/md/GO/76/GO_0050776.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_0090276.md b/md/GO/76/GO_0090276.md index 5207d407c2..32dd3d70d0 100644 --- a/md/GO/76/GO_0090276.md +++ b/md/GO/76/GO_0090276.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [peptide hormone secretion](../../GO/72/GO_0030072.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/76/GO_1901576.md b/md/GO/76/GO_1901576.md index 138b09080b..24ef887d1b 100644 --- a/md/GO/76/GO_1901576.md +++ b/md/GO/76/GO_1901576.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0001977.md b/md/GO/77/GO_0001977.md index d753fb2117..8cd2ecd3cf 100644 --- a/md/GO/77/GO_0001977.md +++ b/md/GO/77/GO_0001977.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0008277.md b/md/GO/77/GO_0008277.md index 15e966e862..dec2651503 100644 --- a/md/GO/77/GO_0008277.md +++ b/md/GO/77/GO_0008277.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [G-protein coupled receptor signaling pathway](../../GO/86/GO_0007186.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0016477.md b/md/GO/77/GO_0016477.md index 7f98875b84..8451dc5d33 100644 --- a/md/GO/77/GO_0016477.md +++ b/md/GO/77/GO_0016477.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0032377.md b/md/GO/77/GO_0032377.md index 98f67354ed..5866f67dab 100644 --- a/md/GO/77/GO_0032377.md +++ b/md/GO/77/GO_0032377.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [intracellular lipid transport](../../GO/65/GO_0032365.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0045577.md b/md/GO/77/GO_0045577.md index 1cee03f88b..0700d28761 100644 --- a/md/GO/77/GO_0045577.md +++ b/md/GO/77/GO_0045577.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [B cell differentiation](../../GO/83/GO_0030183.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0048477.md b/md/GO/77/GO_0048477.md index 667d17ef84..f18c4043cd 100644 --- a/md/GO/77/GO_0048477.md +++ b/md/GO/77/GO_0048477.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0050777.md b/md/GO/77/GO_0050777.md index 5d03d9ac9e..89d6d4fc93 100644 --- a/md/GO/77/GO_0050777.md +++ b/md/GO/77/GO_0050777.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/77/GO_0050877.md b/md/GO/77/GO_0050877.md index 56d266a703..f170b99190 100644 --- a/md/GO/77/GO_0050877.md +++ b/md/GO/77/GO_0050877.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0001978.md b/md/GO/78/GO_0001978.md index 36ab334ed3..5be874a9b9 100644 --- a/md/GO/78/GO_0001978.md +++ b/md/GO/78/GO_0001978.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0005578.md b/md/GO/78/GO_0005578.md index bc0f670714..bb83f9fe08 100644 --- a/md/GO/78/GO_0005578.md +++ b/md/GO/78/GO_0005578.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0030278.md b/md/GO/78/GO_0030278.md index c2d581106f..bd78aec12c 100644 --- a/md/GO/78/GO_0030278.md +++ b/md/GO/78/GO_0030278.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [ossification](../../GO/03/GO_0001503.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0032378.md b/md/GO/78/GO_0032378.md index 6dc0cad48c..cb45b46f3e 100644 --- a/md/GO/78/GO_0032378.md +++ b/md/GO/78/GO_0032378.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [intracellular lipid transport](../../GO/65/GO_0032365.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0045578.md b/md/GO/78/GO_0045578.md index 410f65ae50..83e125f6eb 100644 --- a/md/GO/78/GO_0045578.md +++ b/md/GO/78/GO_0045578.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [B cell differentiation](../../GO/83/GO_0030183.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0048878.md b/md/GO/78/GO_0048878.md index 4ce838502a..7bbd33c7c3 100644 --- a/md/GO/78/GO_0048878.md +++ b/md/GO/78/GO_0048878.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0050678.md b/md/GO/78/GO_0050678.md index 7c06e51202..65dc9da333 100644 --- a/md/GO/78/GO_0050678.md +++ b/md/GO/78/GO_0050678.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [epithelial cell proliferation](../../GO/73/GO_0050673.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0050878.md b/md/GO/78/GO_0050878.md index ac1243849a..5cb6587c3d 100644 --- a/md/GO/78/GO_0050878.md +++ b/md/GO/78/GO_0050878.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0055078.md b/md/GO/78/GO_0055078.md index f7ed2d4c2c..7a0b47701b 100644 --- a/md/GO/78/GO_0055078.md +++ b/md/GO/78/GO_0055078.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0070278.md b/md/GO/78/GO_0070278.md index 26548662f3..9db7fdddbc 100644 --- a/md/GO/78/GO_0070278.md +++ b/md/GO/78/GO_0070278.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/78/GO_0090278.md b/md/GO/78/GO_0090278.md index 4059d552d5..aa52eb12b8 100644 --- a/md/GO/78/GO_0090278.md +++ b/md/GO/78/GO_0090278.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [peptide hormone secretion](../../GO/72/GO_0030072.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/79/GO_0030279.md b/md/GO/79/GO_0030279.md index 47431cb4ce..3d837549dd 100644 --- a/md/GO/79/GO_0030279.md +++ b/md/GO/79/GO_0030279.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [ossification](../../GO/03/GO_0001503.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/79/GO_0032879.md b/md/GO/79/GO_0032879.md index d02d35b036..0b38ecb725 100644 --- a/md/GO/79/GO_0032879.md +++ b/md/GO/79/GO_0032879.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [localization](../../GO/79/GO_0051179.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/79/GO_0046879.md b/md/GO/79/GO_0046879.md index 4eecfb7eca..029bc853d9 100644 --- a/md/GO/79/GO_0046879.md +++ b/md/GO/79/GO_0046879.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/79/GO_0051179.md b/md/GO/79/GO_0051179.md index 6fc616b3c6..25c62c8225 100644 --- a/md/GO/79/GO_0051179.md +++ b/md/GO/79/GO_0051179.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/80/GO_0042180.md b/md/GO/80/GO_0042180.md index 87da090314..7307f12b19 100644 --- a/md/GO/80/GO_0042180.md +++ b/md/GO/80/GO_0042180.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/80/GO_0045580.md b/md/GO/80/GO_0045580.md index 0fe5fb0cf3..9d7723753a 100644 --- a/md/GO/80/GO_0045580.md +++ b/md/GO/80/GO_0045580.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [T cell differentiation](../../GO/17/GO_0030217.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/80/GO_0048580.md b/md/GO/80/GO_0048580.md index 5e31601c06..9643965de7 100644 --- a/md/GO/80/GO_0048580.md +++ b/md/GO/80/GO_0048580.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [post-embryonic development](../../GO/91/GO_0009791.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/80/GO_0050680.md b/md/GO/80/GO_0050680.md index 6ea7a60824..086e8b2d8d 100644 --- a/md/GO/80/GO_0050680.md +++ b/md/GO/80/GO_0050680.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [epithelial cell proliferation](../../GO/73/GO_0050673.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/80/GO_0055080.md b/md/GO/80/GO_0055080.md index 86b6049059..40a0fefc57 100644 --- a/md/GO/80/GO_0055080.md +++ b/md/GO/80/GO_0055080.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0005581.md b/md/GO/81/GO_0005581.md index 49b20b7366..c33fac22df 100644 --- a/md/GO/81/GO_0005581.md +++ b/md/GO/81/GO_0005581.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0009581.md b/md/GO/81/GO_0009581.md index 02e7921ddb..39d445297b 100644 --- a/md/GO/81/GO_0009581.md +++ b/md/GO/81/GO_0009581.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0044281.md b/md/GO/81/GO_0044281.md index 3141b7155a..7a0a6bc90b 100644 --- a/md/GO/81/GO_0044281.md +++ b/md/GO/81/GO_0044281.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0045581.md b/md/GO/81/GO_0045581.md index 6da76b4c6e..34ee08a719 100644 --- a/md/GO/81/GO_0045581.md +++ b/md/GO/81/GO_0045581.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [T cell differentiation](../../GO/17/GO_0030217.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0048581.md b/md/GO/81/GO_0048581.md index f6d39100ea..763849def7 100644 --- a/md/GO/81/GO_0048581.md +++ b/md/GO/81/GO_0048581.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [post-embryonic development](../../GO/91/GO_0009791.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0050981.md b/md/GO/81/GO_0050981.md index 8390dfa289..9a73e05e56 100644 --- a/md/GO/81/GO_0050981.md +++ b/md/GO/81/GO_0050981.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_0061181.md b/md/GO/81/GO_0061181.md index 25e43084f4..954d9fadac 100644 --- a/md/GO/81/GO_0061181.md +++ b/md/GO/81/GO_0061181.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [chondrocyte development](../../GO/63/GO_0002063.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/81/GO_2000181.md b/md/GO/81/GO_2000181.md index e1c237f68e..5699d4529f 100644 --- a/md/GO/81/GO_2000181.md +++ b/md/GO/81/GO_2000181.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [blood vessel morphogenesis](../../GO/14/GO_0048514.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0002682.md b/md/GO/82/GO_0002682.md index 62fda1fcfb..41579f1e92 100644 --- a/md/GO/82/GO_0002682.md +++ b/md/GO/82/GO_0002682.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [immune system process](../../GO/76/GO_0002376.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0005882.md b/md/GO/82/GO_0005882.md index 964c0ffd87..58ed6bc609 100644 --- a/md/GO/82/GO_0005882.md +++ b/md/GO/82/GO_0005882.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0006082.md b/md/GO/82/GO_0006082.md index a9d815a5b8..fc616bddb1 100644 --- a/md/GO/82/GO_0006082.md +++ b/md/GO/82/GO_0006082.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0009582.md b/md/GO/82/GO_0009582.md index 7da7112ac3..2e827c2d6e 100644 --- a/md/GO/82/GO_0009582.md +++ b/md/GO/82/GO_0009582.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0030282.md b/md/GO/82/GO_0030282.md index c85e71628c..af1d84d53b 100644 --- a/md/GO/82/GO_0030282.md +++ b/md/GO/82/GO_0030282.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0031982.md b/md/GO/82/GO_0031982.md index 4f6cb2131b..48ff46bab5 100644 --- a/md/GO/82/GO_0031982.md +++ b/md/GO/82/GO_0031982.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0045682.md b/md/GO/82/GO_0045682.md index 0a8f9f96d7..e2b20037c0 100644 --- a/md/GO/82/GO_0045682.md +++ b/md/GO/82/GO_0045682.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [epidermis development](../../GO/44/GO_0008544.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0050982.md b/md/GO/82/GO_0050982.md index 37b5dfc230..e6ee829095 100644 --- a/md/GO/82/GO_0050982.md +++ b/md/GO/82/GO_0050982.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0051782.md b/md/GO/82/GO_0051782.md index d97257f8ed..6be9832dba 100644 --- a/md/GO/82/GO_0051782.md +++ b/md/GO/82/GO_0051782.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell division](../../GO/01/GO_0051301.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0060082.md b/md/GO/82/GO_0060082.md index 9b9fe3887d..60cabc0990 100644 --- a/md/GO/82/GO_0060082.md +++ b/md/GO/82/GO_0060082.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/82/GO_0061182.md b/md/GO/82/GO_0061182.md index 89d4ffb49f..888a68e9cc 100644 --- a/md/GO/82/GO_0061182.md +++ b/md/GO/82/GO_0061182.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [chondrocyte development](../../GO/63/GO_0002063.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0002683.md b/md/GO/83/GO_0002683.md index b9c863dbcf..5f22b054a3 100644 --- a/md/GO/83/GO_0002683.md +++ b/md/GO/83/GO_0002683.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [immune system process](../../GO/76/GO_0002376.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0005583.md b/md/GO/83/GO_0005583.md index b2c4f0600f..56c32766a2 100644 --- a/md/GO/83/GO_0005583.md +++ b/md/GO/83/GO_0005583.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0005883.md b/md/GO/83/GO_0005883.md index b19022eac9..9794627b5a 100644 --- a/md/GO/83/GO_0005883.md +++ b/md/GO/83/GO_0005883.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intermediate filament](../../GO/82/GO_0005882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [axon](../../GO/24/GO_0030424.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0007283.md b/md/GO/83/GO_0007283.md index ac05c7b130..7ce7749229 100644 --- a/md/GO/83/GO_0007283.md +++ b/md/GO/83/GO_0007283.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0008283.md b/md/GO/83/GO_0008283.md index dd7f096c6a..7d20c14397 100644 --- a/md/GO/83/GO_0008283.md +++ b/md/GO/83/GO_0008283.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0009583.md b/md/GO/83/GO_0009583.md index 6452657c50..eea4258861 100644 --- a/md/GO/83/GO_0009583.md +++ b/md/GO/83/GO_0009583.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0030183.md b/md/GO/83/GO_0030183.md index aa5d22b0b2..462f259353 100644 --- a/md/GO/83/GO_0030183.md +++ b/md/GO/83/GO_0030183.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0045683.md b/md/GO/83/GO_0045683.md index 97a460ba7b..0252745629 100644 --- a/md/GO/83/GO_0045683.md +++ b/md/GO/83/GO_0045683.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [epidermis development](../../GO/44/GO_0008544.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0046883.md b/md/GO/83/GO_0046883.md index 30f5c051d9..5ebcfca927 100644 --- a/md/GO/83/GO_0046883.md +++ b/md/GO/83/GO_0046883.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [hormone secretion](../../GO/79/GO_0046879.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0048583.md b/md/GO/83/GO_0048583.md index 45206d5432..95997207fc 100644 --- a/md/GO/83/GO_0048583.md +++ b/md/GO/83/GO_0048583.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [response to stimulus](../../GO/96/GO_0050896.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/83/GO_0060083.md b/md/GO/83/GO_0060083.md index 43153f1a40..1cf49aba3f 100644 --- a/md/GO/83/GO_0060083.md +++ b/md/GO/83/GO_0060083.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [micturition](../../GO/73/GO_0060073.md) and [smooth muscle contraction](../../GO/39/GO_0006939.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0002384.md b/md/GO/84/GO_0002384.md index 8406287674..b60b5526a2 100644 --- a/md/GO/84/GO_0002384.md +++ b/md/GO/84/GO_0002384.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0005584.md b/md/GO/84/GO_0005584.md index a1413eaa83..d57387470c 100644 --- a/md/GO/84/GO_0005584.md +++ b/md/GO/84/GO_0005584.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0009584.md b/md/GO/84/GO_0009584.md index fcd0e5bf9e..c1a38009af 100644 --- a/md/GO/84/GO_0009584.md +++ b/md/GO/84/GO_0009584.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0043084.md b/md/GO/84/GO_0043084.md index d6c88303f4..011005ec3f 100644 --- a/md/GO/84/GO_0043084.md +++ b/md/GO/84/GO_0043084.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0050884.md b/md/GO/84/GO_0050884.md index fa74caadc0..582faac2a1 100644 --- a/md/GO/84/GO_0050884.md +++ b/md/GO/84/GO_0050884.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/84/GO_0060284.md b/md/GO/84/GO_0060284.md index bdaf980105..f10d4a1cf3 100644 --- a/md/GO/84/GO_0060284.md +++ b/md/GO/84/GO_0060284.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell development](../../GO/68/GO_0048468.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0002285.md b/md/GO/85/GO_0002285.md index 520c241cf0..f3d5575683 100644 --- a/md/GO/85/GO_0002285.md +++ b/md/GO/85/GO_0002285.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphocyte activation](../../GO/49/GO_0046649.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0005585.md b/md/GO/85/GO_0005585.md index 82cba0643b..30e0d4842a 100644 --- a/md/GO/85/GO_0005585.md +++ b/md/GO/85/GO_0005585.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0007585.md b/md/GO/85/GO_0007585.md index 0628c5b328..7ac5382ea1 100644 --- a/md/GO/85/GO_0007585.md +++ b/md/GO/85/GO_0007585.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0008285.md b/md/GO/85/GO_0008285.md index 0953735b19..8dc1d0fc14 100644 --- a/md/GO/85/GO_0008285.md +++ b/md/GO/85/GO_0008285.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell proliferation](../../GO/83/GO_0008283.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0008585.md b/md/GO/85/GO_0008585.md index 138e3f6e42..3e6ad08d66 100644 --- a/md/GO/85/GO_0008585.md +++ b/md/GO/85/GO_0008585.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0010185.md b/md/GO/85/GO_0010185.md index c2b682a6e6..fcd45a087a 100644 --- a/md/GO/85/GO_0010185.md +++ b/md/GO/85/GO_0010185.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular defense response](../../GO/68/GO_0006968.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0046885.md b/md/GO/85/GO_0046885.md index 0cbb58f3bd..b7ad1edb9b 100644 --- a/md/GO/85/GO_0046885.md +++ b/md/GO/85/GO_0046885.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [hormone biosynthetic process](../../GO/46/GO_0042446.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0048585.md b/md/GO/85/GO_0048585.md index 00df672135..6f9f8a6229 100644 --- a/md/GO/85/GO_0048585.md +++ b/md/GO/85/GO_0048585.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [response to stimulus](../../GO/96/GO_0050896.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/85/GO_0050885.md b/md/GO/85/GO_0050885.md index c70bf8476d..73556cb908 100644 --- a/md/GO/85/GO_0050885.md +++ b/md/GO/85/GO_0050885.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0002286.md b/md/GO/86/GO_0002286.md index 3676bc1ce6..c04bdb62e0 100644 --- a/md/GO/86/GO_0002286.md +++ b/md/GO/86/GO_0002286.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [T cell activation](../../GO/10/GO_0042110.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0005586.md b/md/GO/86/GO_0005586.md index d643ea5396..0aab97e37f 100644 --- a/md/GO/86/GO_0005586.md +++ b/md/GO/86/GO_0005586.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0007186.md b/md/GO/86/GO_0007186.md index 1067c06b4b..6053e5ea25 100644 --- a/md/GO/86/GO_0007186.md +++ b/md/GO/86/GO_0007186.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0007586.md b/md/GO/86/GO_0007586.md index 28b6df04a2..c6152db903 100644 --- a/md/GO/86/GO_0007586.md +++ b/md/GO/86/GO_0007586.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0032386.md b/md/GO/86/GO_0032386.md index e67191babe..0ef7980120 100644 --- a/md/GO/86/GO_0032386.md +++ b/md/GO/86/GO_0032386.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [intracellular transport](../../GO/07/GO_0046907.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0042886.md b/md/GO/86/GO_0042886.md index 9a0c8b5099..f6379ac9c8 100644 --- a/md/GO/86/GO_0042886.md +++ b/md/GO/86/GO_0042886.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0045786.md b/md/GO/86/GO_0045786.md index e4d440b8b4..56e684e058 100644 --- a/md/GO/86/GO_0045786.md +++ b/md/GO/86/GO_0045786.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell cycle](../../GO/49/GO_0007049.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0045986.md b/md/GO/86/GO_0045986.md index bb16a1e028..55a7af9453 100644 --- a/md/GO/86/GO_0045986.md +++ b/md/GO/86/GO_0045986.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [smooth muscle contraction](../../GO/39/GO_0006939.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0050886.md b/md/GO/86/GO_0050886.md index 862cfd3fca..fb69d8bd77 100644 --- a/md/GO/86/GO_0050886.md +++ b/md/GO/86/GO_0050886.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/86/GO_0060986.md b/md/GO/86/GO_0060986.md index ade366a17c..1b5ea26045 100644 --- a/md/GO/86/GO_0060986.md +++ b/md/GO/86/GO_0060986.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0005587.md b/md/GO/87/GO_0005587.md index 7e60b3cae8..47e7313c59 100644 --- a/md/GO/87/GO_0005587.md +++ b/md/GO/87/GO_0005587.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0006887.md b/md/GO/87/GO_0006887.md index f293f131f2..5ed834a95e 100644 --- a/md/GO/87/GO_0006887.md +++ b/md/GO/87/GO_0006887.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0009887.md b/md/GO/87/GO_0009887.md index 34b5d0ce64..327022d66a 100644 --- a/md/GO/87/GO_0009887.md +++ b/md/GO/87/GO_0009887.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0009987.md b/md/GO/87/GO_0009987.md index e793536926..a7f090a47e 100644 --- a/md/GO/87/GO_0009987.md +++ b/md/GO/87/GO_0009987.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0031987.md b/md/GO/87/GO_0031987.md index 767752c629..e4f218325a 100644 --- a/md/GO/87/GO_0031987.md +++ b/md/GO/87/GO_0031987.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [locomotion](../../GO/11/GO_0040011.md) and [part_of](../../BFO/50/BFO_0000050.md) some [locomotory behavior](../../GO/26/GO_0007626.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0032387.md b/md/GO/87/GO_0032387.md index 9407ad2ff0..76f6259dd1 100644 --- a/md/GO/87/GO_0032387.md +++ b/md/GO/87/GO_0032387.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [intracellular transport](../../GO/07/GO_0046907.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0045187.md b/md/GO/87/GO_0045187.md index 4c8235d9c6..2a04b42bc7 100644 --- a/md/GO/87/GO_0045187.md +++ b/md/GO/87/GO_0045187.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [circadian sleep/wake cycle, sleep](../../GO/02/GO_0050802.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/87/GO_0090087.md b/md/GO/87/GO_0090087.md index ce55534d15..637b73e513 100644 --- a/md/GO/87/GO_0090087.md +++ b/md/GO/87/GO_0090087.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [peptide transport](../../GO/33/GO_0015833.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0004888.md b/md/GO/88/GO_0004888.md index 5684207be1..66f9963347 100644 --- a/md/GO/88/GO_0004888.md +++ b/md/GO/88/GO_0004888.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0007588.md b/md/GO/88/GO_0007588.md index 913d3f3e3a..19d1ff0132 100644 --- a/md/GO/88/GO_0007588.md +++ b/md/GO/88/GO_0007588.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0009888.md b/md/GO/88/GO_0009888.md index 7c5fbd4c89..222feee9af 100644 --- a/md/GO/88/GO_0009888.md +++ b/md/GO/88/GO_0009888.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0030888.md b/md/GO/88/GO_0030888.md index 4a3dc80192..9d94b8d612 100644 --- a/md/GO/88/GO_0030888.md +++ b/md/GO/88/GO_0030888.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [B cell proliferation](../../GO/00/GO_0042100.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0031988.md b/md/GO/88/GO_0031988.md index 0a33c0a0ad..ce7029167d 100644 --- a/md/GO/88/GO_0031988.md +++ b/md/GO/88/GO_0031988.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0043588.md b/md/GO/88/GO_0043588.md index e8be25a657..96a6aecc85 100644 --- a/md/GO/88/GO_0043588.md +++ b/md/GO/88/GO_0043588.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0045188.md b/md/GO/88/GO_0045188.md index b633abe96a..302ed2649a 100644 --- a/md/GO/88/GO_0045188.md +++ b/md/GO/88/GO_0045188.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [circadian sleep/wake cycle, non-REM sleep](../../GO/48/GO_0042748.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0045988.md b/md/GO/88/GO_0045988.md index 031a300454..a90d2b9285 100644 --- a/md/GO/88/GO_0045988.md +++ b/md/GO/88/GO_0045988.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [striated muscle contraction](../../GO/41/GO_0006941.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0046888.md b/md/GO/88/GO_0046888.md index dfedea287d..13b78adf82 100644 --- a/md/GO/88/GO_0046888.md +++ b/md/GO/88/GO_0046888.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [hormone secretion](../../GO/79/GO_0046879.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0048588.md b/md/GO/88/GO_0048588.md index 351f2f8120..8da4194705 100644 --- a/md/GO/88/GO_0048588.md +++ b/md/GO/88/GO_0048588.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/88/GO_0060688.md b/md/GO/88/GO_0060688.md index 7e657827f1..d82b999b63 100644 --- a/md/GO/88/GO_0060688.md +++ b/md/GO/88/GO_0060688.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [morphogenesis of a branching structure](../../GO/63/GO_0001763.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0007589.md b/md/GO/89/GO_0007589.md index f67e8e289f..28ef7b3d3e 100644 --- a/md/GO/89/GO_0007589.md +++ b/md/GO/89/GO_0007589.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0009889.md b/md/GO/89/GO_0009889.md index e77ca487a7..5fcab48dff 100644 --- a/md/GO/89/GO_0009889.md +++ b/md/GO/89/GO_0009889.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [biosynthetic process](../../GO/58/GO_0009058.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0030889.md b/md/GO/89/GO_0030889.md index 02c1920e58..42c35da1fa 100644 --- a/md/GO/89/GO_0030889.md +++ b/md/GO/89/GO_0030889.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [B cell proliferation](../../GO/00/GO_0042100.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0048589.md b/md/GO/89/GO_0048589.md index 582b1dd146..a77e348817 100644 --- a/md/GO/89/GO_0048589.md +++ b/md/GO/89/GO_0048589.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0050789.md b/md/GO/89/GO_0050789.md index bcc5e3ef5e..cfbff59498 100644 --- a/md/GO/89/GO_0050789.md +++ b/md/GO/89/GO_0050789.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [biological_process](../../GO/50/GO_0008150.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0060089.md b/md/GO/89/GO_0060089.md index 5521aa7d2a..d8bab1c8a5 100644 --- a/md/GO/89/GO_0060089.md +++ b/md/GO/89/GO_0060089.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/89/GO_0072089.md b/md/GO/89/GO_0072089.md index ba27794c53..51b19e201c 100644 --- a/md/GO/89/GO_0072089.md +++ b/md/GO/89/GO_0072089.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0001990.md b/md/GO/90/GO_0001990.md index 1b668b461b..828b58a7b8 100644 --- a/md/GO/90/GO_0001990.md +++ b/md/GO/90/GO_0001990.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0002790.md b/md/GO/90/GO_0002790.md index 304d7b7c18..52d123c7a2 100644 --- a/md/GO/90/GO_0002790.md +++ b/md/GO/90/GO_0002790.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0006590.md b/md/GO/90/GO_0006590.md index af5209c8b2..e394bf7458 100644 --- a/md/GO/90/GO_0006590.md +++ b/md/GO/90/GO_0006590.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0009590.md b/md/GO/90/GO_0009590.md index e2f8d7e742..2546b435a5 100644 --- a/md/GO/90/GO_0009590.md +++ b/md/GO/90/GO_0009590.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0009790.md b/md/GO/90/GO_0009790.md index 45f5afeb0c..33d0bc7325 100644 --- a/md/GO/90/GO_0009790.md +++ b/md/GO/90/GO_0009790.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0009890.md b/md/GO/90/GO_0009890.md index b6578ecb73..16676e7b61 100644 --- a/md/GO/90/GO_0009890.md +++ b/md/GO/90/GO_0009890.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [biosynthetic process](../../GO/58/GO_0009058.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0046890.md b/md/GO/90/GO_0046890.md index 8eb8a02cb3..02bea572af 100644 --- a/md/GO/90/GO_0046890.md +++ b/md/GO/90/GO_0046890.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [lipid biosynthetic process](../../GO/10/GO_0008610.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0050890.md b/md/GO/90/GO_0050890.md index f2a21960a3..f7c17f2e0e 100644 --- a/md/GO/90/GO_0050890.md +++ b/md/GO/90/GO_0050890.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/90/GO_0080090.md b/md/GO/90/GO_0080090.md index d5685a61c0..8f626674a4 100644 --- a/md/GO/90/GO_0080090.md +++ b/md/GO/90/GO_0080090.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [primary metabolic process](../../GO/38/GO_0044238.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0002791.md b/md/GO/91/GO_0002791.md index c05dc74c0b..9d971f7232 100644 --- a/md/GO/91/GO_0002791.md +++ b/md/GO/91/GO_0002791.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [peptide secretion](../../GO/90/GO_0002790.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0003091.md b/md/GO/91/GO_0003091.md index 6de9dc8bb3..0be6d38afc 100644 --- a/md/GO/91/GO_0003091.md +++ b/md/GO/91/GO_0003091.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0009791.md b/md/GO/91/GO_0009791.md index d2d71b0938..b9b34d0d7e 100644 --- a/md/GO/91/GO_0009791.md +++ b/md/GO/91/GO_0009791.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0032991.md b/md/GO/91/GO_0032991.md index c158d39317..83866972f8 100644 --- a/md/GO/91/GO_0032991.md +++ b/md/GO/91/GO_0032991.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0050891.md b/md/GO/91/GO_0050891.md index b76e748be1..07295a8a8f 100644 --- a/md/GO/91/GO_0050891.md +++ b/md/GO/91/GO_0050891.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0070091.md b/md/GO/91/GO_0070091.md index 97e757ab81..f5f74a3192 100644 --- a/md/GO/91/GO_0070091.md +++ b/md/GO/91/GO_0070091.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/91/GO_0072091.md b/md/GO/91/GO_0072091.md index b3d0a56fe5..01cc87c093 100644 --- a/md/GO/91/GO_0072091.md +++ b/md/GO/91/GO_0072091.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [stem cell proliferation](../../GO/89/GO_0072089.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0001992.md b/md/GO/92/GO_0001992.md index 0675f4375e..a5675f286c 100644 --- a/md/GO/92/GO_0001992.md +++ b/md/GO/92/GO_0001992.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0002292.md b/md/GO/92/GO_0002292.md index 0094914f52..88fd349f7c 100644 --- a/md/GO/92/GO_0002292.md +++ b/md/GO/92/GO_0002292.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [T cell differentiation](../../GO/17/GO_0030217.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune response](../../GO/55/GO_0006955.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0002792.md b/md/GO/92/GO_0002792.md index 8b7ca02578..c8b889cf55 100644 --- a/md/GO/92/GO_0002792.md +++ b/md/GO/92/GO_0002792.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [peptide secretion](../../GO/90/GO_0002790.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0007292.md b/md/GO/92/GO_0007292.md index f2cbce4247..ae44bb6c64 100644 --- a/md/GO/92/GO_0007292.md +++ b/md/GO/92/GO_0007292.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0009792.md b/md/GO/92/GO_0009792.md index 1121cee311..86efe5351e 100644 --- a/md/GO/92/GO_0009792.md +++ b/md/GO/92/GO_0009792.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0009892.md b/md/GO/92/GO_0009892.md index e1e6417a5e..61b7d1f44e 100644 --- a/md/GO/92/GO_0009892.md +++ b/md/GO/92/GO_0009892.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [metabolic process](../../GO/52/GO_0008152.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0016192.md b/md/GO/92/GO_0016192.md index f263b6dde5..f406ce95c7 100644 --- a/md/GO/92/GO_0016192.md +++ b/md/GO/92/GO_0016192.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0042592.md b/md/GO/92/GO_0042592.md index ae638b2d2a..724a98ca76 100644 --- a/md/GO/92/GO_0042592.md +++ b/md/GO/92/GO_0042592.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0044092.md b/md/GO/92/GO_0044092.md index 47b3ecac95..82e202d2da 100644 --- a/md/GO/92/GO_0044092.md +++ b/md/GO/92/GO_0044092.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [molecular_function](../../GO/74/GO_0003674.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0045992.md b/md/GO/92/GO_0045992.md index a07bd60b8e..560656c012 100644 --- a/md/GO/92/GO_0045992.md +++ b/md/GO/92/GO_0045992.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [embryo development](../../GO/90/GO_0009790.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0046692.md b/md/GO/92/GO_0046692.md index 66eab91a43..bdc2758943 100644 --- a/md/GO/92/GO_0046692.md +++ b/md/GO/92/GO_0046692.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_0070092.md b/md/GO/92/GO_0070092.md index 1d71bc1463..b55fcdfb20 100644 --- a/md/GO/92/GO_0070092.md +++ b/md/GO/92/GO_0070092.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [glucagon secretion](../../GO/91/GO_0070091.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/92/GO_2000292.md b/md/GO/92/GO_2000292.md index 21662c71c7..ea4fd3ff06 100644 --- a/md/GO/92/GO_2000292.md +++ b/md/GO/92/GO_2000292.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [defecation](../../GO/21/GO_0030421.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0003093.md b/md/GO/93/GO_0003093.md index 23a9543ad0..8d205197ba 100644 --- a/md/GO/93/GO_0003093.md +++ b/md/GO/93/GO_0003093.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [glomerular filtration](../../GO/94/GO_0003094.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0009593.md b/md/GO/93/GO_0009593.md index b32d0dab6b..b5af644a5a 100644 --- a/md/GO/93/GO_0009593.md +++ b/md/GO/93/GO_0009593.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0030193.md b/md/GO/93/GO_0030193.md index bc4fa38958..59b869fe24 100644 --- a/md/GO/93/GO_0030193.md +++ b/md/GO/93/GO_0030193.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [blood coagulation](../../GO/96/GO_0007596.md) ## Other Logical Axioms @@ -31,5 +31,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0050793.md b/md/GO/93/GO_0050793.md index a780652c79..1442afe97f 100644 --- a/md/GO/93/GO_0050793.md +++ b/md/GO/93/GO_0050793.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [developmental process](../../GO/02/GO_0032502.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0051093.md b/md/GO/93/GO_0051093.md index b9b59b9e70..3ae70c1ff2 100644 --- a/md/GO/93/GO_0051093.md +++ b/md/GO/93/GO_0051093.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [developmental process](../../GO/02/GO_0032502.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0070093.md b/md/GO/93/GO_0070093.md index 4df557b1c8..8f709e10f1 100644 --- a/md/GO/93/GO_0070093.md +++ b/md/GO/93/GO_0070093.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [glucagon secretion](../../GO/91/GO_0070091.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_0070293.md b/md/GO/93/GO_0070293.md index 79c9241f1c..a157c2df67 100644 --- a/md/GO/93/GO_0070293.md +++ b/md/GO/93/GO_0070293.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/93/GO_2000293.md b/md/GO/93/GO_2000293.md index 57015b09a3..4038e0d934 100644 --- a/md/GO/93/GO_2000293.md +++ b/md/GO/93/GO_2000293.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [defecation](../../GO/21/GO_0030421.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_0002694.md b/md/GO/94/GO_0002694.md index d5975869ec..9cfe4cd8b0 100644 --- a/md/GO/94/GO_0002694.md +++ b/md/GO/94/GO_0002694.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [leukocyte activation](../../GO/21/GO_0045321.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_0003094.md b/md/GO/94/GO_0003094.md index f7da8c43f9..9466df5578 100644 --- a/md/GO/94/GO_0003094.md +++ b/md/GO/94/GO_0003094.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_0006694.md b/md/GO/94/GO_0006694.md index 4485986226..28733cdf85 100644 --- a/md/GO/94/GO_0006694.md +++ b/md/GO/94/GO_0006694.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_0010894.md b/md/GO/94/GO_0010894.md index a0dc166fce..981715d56b 100644 --- a/md/GO/94/GO_0010894.md +++ b/md/GO/94/GO_0010894.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [steroid biosynthetic process](../../GO/94/GO_0006694.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_0050794.md b/md/GO/94/GO_0050794.md index 7cdf4cce19..4691ddbc22 100644 --- a/md/GO/94/GO_0050794.md +++ b/md/GO/94/GO_0050794.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cellular process](../../GO/87/GO_0009987.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/94/GO_2000194.md b/md/GO/94/GO_2000194.md index 9dbb759533..ed4e14488a 100644 --- a/md/GO/94/GO_2000194.md +++ b/md/GO/94/GO_2000194.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [female gonad development](../../GO/85/GO_0008585.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0002695.md b/md/GO/95/GO_0002695.md index 1cf1eb314e..f9674333c6 100644 --- a/md/GO/95/GO_0002695.md +++ b/md/GO/95/GO_0002695.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [leukocyte activation](../../GO/21/GO_0045321.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0030195.md b/md/GO/95/GO_0030195.md index 1738f25b42..675196740a 100644 --- a/md/GO/95/GO_0030195.md +++ b/md/GO/95/GO_0030195.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [blood coagulation](../../GO/96/GO_0007596.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0035295.md b/md/GO/95/GO_0035295.md index db064b0b0c..9db74180ae 100644 --- a/md/GO/95/GO_0035295.md +++ b/md/GO/95/GO_0035295.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0042995.md b/md/GO/95/GO_0042995.md index 87f0e2643b..250d102768 100644 --- a/md/GO/95/GO_0042995.md +++ b/md/GO/95/GO_0042995.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0043695.md b/md/GO/95/GO_0043695.md index 493334d1ea..dec8f4ba68 100644 --- a/md/GO/95/GO_0043695.md +++ b/md/GO/95/GO_0043695.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0045095.md b/md/GO/95/GO_0045095.md index df253cc707..8e4e5db425 100644 --- a/md/GO/95/GO_0045095.md +++ b/md/GO/95/GO_0045095.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0045595.md b/md/GO/95/GO_0045595.md index e4484231b7..39d125ad9b 100644 --- a/md/GO/95/GO_0045595.md +++ b/md/GO/95/GO_0045595.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [cell differentiation](../../GO/54/GO_0030154.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0045995.md b/md/GO/95/GO_0045995.md index 6f3fe34bb2..9f8c4ae7d1 100644 --- a/md/GO/95/GO_0045995.md +++ b/md/GO/95/GO_0045995.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [embryo development](../../GO/90/GO_0009790.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0050795.md b/md/GO/95/GO_0050795.md index 9aacefcd30..d2f07cd1f0 100644 --- a/md/GO/95/GO_0050795.md +++ b/md/GO/95/GO_0050795.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [behavior](../../GO/10/GO_0007610.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_0070295.md b/md/GO/95/GO_0070295.md index c5d3e85bba..73c9df7dd0 100644 --- a/md/GO/95/GO_0070295.md +++ b/md/GO/95/GO_0070295.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/95/GO_2000195.md b/md/GO/95/GO_2000195.md index 5711391959..1336b3ccff 100644 --- a/md/GO/95/GO_2000195.md +++ b/md/GO/95/GO_2000195.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [female gonad development](../../GO/85/GO_0008585.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/96/GO_0001696.md b/md/GO/96/GO_0001696.md index 8d6465bbd8..be801a68bb 100644 --- a/md/GO/96/GO_0001696.md +++ b/md/GO/96/GO_0001696.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/96/GO_0007596.md b/md/GO/96/GO_0007596.md index 91b0b9ec6f..e059170083 100644 --- a/md/GO/96/GO_0007596.md +++ b/md/GO/96/GO_0007596.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/96/GO_0045596.md b/md/GO/96/GO_0045596.md index 8b5498f50d..ecf3a2b334 100644 --- a/md/GO/96/GO_0045596.md +++ b/md/GO/96/GO_0045596.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [cell differentiation](../../GO/54/GO_0030154.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/96/GO_0050796.md b/md/GO/96/GO_0050796.md index 7f1faee22d..9f230dc1ba 100644 --- a/md/GO/96/GO_0050796.md +++ b/md/GO/96/GO_0050796.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [insulin secretion](../../GO/73/GO_0030073.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/96/GO_0050896.md b/md/GO/96/GO_0050896.md index be6fea7602..5b3a6829e1 100644 --- a/md/GO/96/GO_0050896.md +++ b/md/GO/96/GO_0050896.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/97/GO_0002697.md b/md/GO/97/GO_0002697.md index 78167cc18a..8d12aca26a 100644 --- a/md/GO/97/GO_0002697.md +++ b/md/GO/97/GO_0002697.md @@ -20,7 +20,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [immune effector process](../../GO/52/GO_0002252.md) ## Other Logical Axioms @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/97/GO_0003097.md b/md/GO/97/GO_0003097.md index 54345f4dc4..ee3ed8019a 100644 --- a/md/GO/97/GO_0003097.md +++ b/md/GO/97/GO_0003097.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/97/GO_0030097.md b/md/GO/97/GO_0030097.md index 086fc92d69..a0f99d6e3f 100644 --- a/md/GO/97/GO_0030097.md +++ b/md/GO/97/GO_0030097.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/97/GO_0044297.md b/md/GO/97/GO_0044297.md index 364ef1095a..9f163d7649 100644 --- a/md/GO/97/GO_0044297.md +++ b/md/GO/97/GO_0044297.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0002698.md b/md/GO/98/GO_0002698.md index 68ee023267..5afeefac5e 100644 --- a/md/GO/98/GO_0002698.md +++ b/md/GO/98/GO_0002698.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [immune effector process](../../GO/52/GO_0002252.md) ## Other Logical Axioms @@ -29,5 +29,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0019098.md b/md/GO/98/GO_0019098.md index deb0619b8e..5d2402e746 100644 --- a/md/GO/98/GO_0019098.md +++ b/md/GO/98/GO_0019098.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0030098.md b/md/GO/98/GO_0030098.md index bb16e2789b..41cd552bc3 100644 --- a/md/GO/98/GO_0030098.md +++ b/md/GO/98/GO_0030098.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0030198.md b/md/GO/98/GO_0030198.md index f037033be2..942a8f3e0a 100644 --- a/md/GO/98/GO_0030198.md +++ b/md/GO/98/GO_0030198.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0035898.md b/md/GO/98/GO_0035898.md index 3627ae5586..14ac2632c1 100644 --- a/md/GO/98/GO_0035898.md +++ b/md/GO/98/GO_0035898.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0042698.md b/md/GO/98/GO_0042698.md index 8068e1ac13..5388afd511 100644 --- a/md/GO/98/GO_0042698.md +++ b/md/GO/98/GO_0042698.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_0048598.md b/md/GO/98/GO_0048598.md index da9ef70c14..ace8ec1a53 100644 --- a/md/GO/98/GO_0048598.md +++ b/md/GO/98/GO_0048598.md @@ -28,5 +28,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/98/GO_1900098.md b/md/GO/98/GO_1900098.md index 4a5cd779aa..30b8dc13ff 100644 --- a/md/GO/98/GO_1900098.md +++ b/md/GO/98/GO_1900098.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [regulates](../../RO/11/RO_0002211.md) some [plasma cell differentiation](../../GO/17/GO_0002317.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_0007399.md b/md/GO/99/GO_0007399.md index d1b18fe831..0cc018a3e0 100644 --- a/md/GO/99/GO_0007399.md +++ b/md/GO/99/GO_0007399.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_0007599.md b/md/GO/99/GO_0007599.md index d278bf2b31..e6d5290ea7 100644 --- a/md/GO/99/GO_0007599.md +++ b/md/GO/99/GO_0007599.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_0031099.md b/md/GO/99/GO_0031099.md index 65b527a0b7..a5bc969d7b 100644 --- a/md/GO/99/GO_0031099.md +++ b/md/GO/99/GO_0031099.md @@ -27,5 +27,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_0044699.md b/md/GO/99/GO_0044699.md index 09c4298952..03cfdee0ac 100644 --- a/md/GO/99/GO_0044699.md +++ b/md/GO/99/GO_0044699.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_0048699.md b/md/GO/99/GO_0048699.md index 75f937f452..07bf9d1ee6 100644 --- a/md/GO/99/GO_0048699.md +++ b/md/GO/99/GO_0048699.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/GO/99/GO_1900099.md b/md/GO/99/GO_1900099.md index b57d7c5608..21c718874b 100644 --- a/md/GO/99/GO_1900099.md +++ b/md/GO/99/GO_1900099.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [biological regulation](../../GO/07/GO_0065007.md) and [negatively_regulates](../../RO/12/RO_0002212.md) some [plasma cell differentiation](../../GO/17/GO_0002317.md) ## Other Logical Axioms @@ -30,5 +30,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/IAO/30/IAO_0000030.md b/md/IAO/30/IAO_0000030.md index 1db9706cbc..278a4bab7a 100644 --- a/md/IAO/30/IAO_0000030.md +++ b/md/IAO/30/IAO_0000030.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/01/NBO_0000001.md b/md/NBO/01/NBO_0000001.md index 48056f84d9..4b0a4b7152 100644 --- a/md/NBO/01/NBO_0000001.md +++ b/md/NBO/01/NBO_0000001.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/03/NBO_0000403.md b/md/NBO/03/NBO_0000403.md index 99d2b5a0af..e811a56df9 100644 --- a/md/NBO/03/NBO_0000403.md +++ b/md/NBO/03/NBO_0000403.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/07/NBO_0000007.md b/md/NBO/07/NBO_0000007.md index 5516c9f01c..a695bb8386 100644 --- a/md/NBO/07/NBO_0000007.md +++ b/md/NBO/07/NBO_0000007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/13/NBO_0000313.md b/md/NBO/13/NBO_0000313.md index 42b5d5f4da..a1cbdd77c1 100644 --- a/md/NBO/13/NBO_0000313.md +++ b/md/NBO/13/NBO_0000313.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/27/NBO_0000027.md b/md/NBO/27/NBO_0000027.md index 70c93128be..571534f1aa 100644 --- a/md/NBO/27/NBO_0000027.md +++ b/md/NBO/27/NBO_0000027.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/38/NBO_0000338.md b/md/NBO/38/NBO_0000338.md index 224382300f..ec3cc58ae7 100644 --- a/md/NBO/38/NBO_0000338.md +++ b/md/NBO/38/NBO_0000338.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/39/NBO_0000339.md b/md/NBO/39/NBO_0000339.md index d54bf7febf..c1eb7f9af6 100644 --- a/md/NBO/39/NBO_0000339.md +++ b/md/NBO/39/NBO_0000339.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/45/NBO_0000445.md b/md/NBO/45/NBO_0000445.md index 8f55e5bd7a..79edd744c1 100644 --- a/md/NBO/45/NBO_0000445.md +++ b/md/NBO/45/NBO_0000445.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/47/NBO_0000747.md b/md/NBO/47/NBO_0000747.md index 3272a33a3e..5cd610e82d 100644 --- a/md/NBO/47/NBO_0000747.md +++ b/md/NBO/47/NBO_0000747.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/51/NBO_0000451.md b/md/NBO/51/NBO_0000451.md index 70b5940a14..4d9704aece 100644 --- a/md/NBO/51/NBO_0000451.md +++ b/md/NBO/51/NBO_0000451.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NBO/73/NBO_0000073.md b/md/NBO/73/NBO_0000073.md index cb9ab31ffc..c8056d05fc 100644 --- a/md/NBO/73/NBO_0000073.md +++ b/md/NBO/73/NBO_0000073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/00/NCBITaxon_35500.md b/md/NCBITaxon/00/NCBITaxon_35500.md index 52ed691a44..f7e05a0d0e 100644 --- a/md/NCBITaxon/00/NCBITaxon_35500.md +++ b/md/NCBITaxon/00/NCBITaxon_35500.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/01/NCBITaxon_6101.md b/md/NCBITaxon/01/NCBITaxon_6101.md index 918c5b3651..f8cd7b1257 100644 --- a/md/NCBITaxon/01/NCBITaxon_6101.md +++ b/md/NCBITaxon/01/NCBITaxon_6101.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/04/NCBITaxon_8504.md b/md/NCBITaxon/04/NCBITaxon_8504.md index af3d4b23f4..3c53b0b6a4 100644 --- a/md/NCBITaxon/04/NCBITaxon_8504.md +++ b/md/NCBITaxon/04/NCBITaxon_8504.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/04/NCBITaxon_85604.md b/md/NCBITaxon/04/NCBITaxon_85604.md index 05771c7522..b18a61c44e 100644 --- a/md/NCBITaxon/04/NCBITaxon_85604.md +++ b/md/NCBITaxon/04/NCBITaxon_85604.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/04/NCBITaxon_9604.md b/md/NCBITaxon/04/NCBITaxon_9604.md index 755520ce39..bfc529971e 100644 --- a/md/NCBITaxon/04/NCBITaxon_9604.md +++ b/md/NCBITaxon/04/NCBITaxon_9604.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/05/NCBITaxon_9005.md b/md/NCBITaxon/05/NCBITaxon_9005.md index 49196677f6..21092607ce 100644 --- a/md/NCBITaxon/05/NCBITaxon_9005.md +++ b/md/NCBITaxon/05/NCBITaxon_9005.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/05/NCBITaxon_9605.md b/md/NCBITaxon/05/NCBITaxon_9605.md index f572b147a8..9a0b62067c 100644 --- a/md/NCBITaxon/05/NCBITaxon_9605.md +++ b/md/NCBITaxon/05/NCBITaxon_9605.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/06/NCBITaxon_9606.md b/md/NCBITaxon/06/NCBITaxon_9606.md index fa53a628c3..1fb2f6d838 100644 --- a/md/NCBITaxon/06/NCBITaxon_9606.md +++ b/md/NCBITaxon/06/NCBITaxon_9606.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/07/NCBITaxon_39107.md b/md/NCBITaxon/07/NCBITaxon_39107.md index 7b7411752d..7bfee6de9e 100644 --- a/md/NCBITaxon/07/NCBITaxon_39107.md +++ b/md/NCBITaxon/07/NCBITaxon_39107.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/07/NCBITaxon_8507.md b/md/NCBITaxon/07/NCBITaxon_8507.md index 246d0d96c4..97a6482cf0 100644 --- a/md/NCBITaxon/07/NCBITaxon_8507.md +++ b/md/NCBITaxon/07/NCBITaxon_8507.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/07/NCBITaxon_9307.md b/md/NCBITaxon/07/NCBITaxon_9307.md index e65d906624..7044aa0617 100644 --- a/md/NCBITaxon/07/NCBITaxon_9307.md +++ b/md/NCBITaxon/07/NCBITaxon_9307.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/08/NCBITaxon_33208.md b/md/NCBITaxon/08/NCBITaxon_33208.md index ede5c68faa..59cb86f7e3 100644 --- a/md/NCBITaxon/08/NCBITaxon_33208.md +++ b/md/NCBITaxon/08/NCBITaxon_33208.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/08/NCBITaxon_9608.md b/md/NCBITaxon/08/NCBITaxon_9608.md index 03bb9c2a84..e6e4e2e389 100644 --- a/md/NCBITaxon/08/NCBITaxon_9608.md +++ b/md/NCBITaxon/08/NCBITaxon_9608.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/09/NCBITaxon_38609.md b/md/NCBITaxon/09/NCBITaxon_38609.md index 2327b2e008..bdaab75585 100644 --- a/md/NCBITaxon/09/NCBITaxon_38609.md +++ b/md/NCBITaxon/09/NCBITaxon_38609.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/09/NCBITaxon_8509.md b/md/NCBITaxon/09/NCBITaxon_8509.md index 3e05d3b00c..c9c9723565 100644 --- a/md/NCBITaxon/09/NCBITaxon_8509.md +++ b/md/NCBITaxon/09/NCBITaxon_8509.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/09/NCBITaxon_9709.md b/md/NCBITaxon/09/NCBITaxon_9709.md index 48b4b83404..cf71972b73 100644 --- a/md/NCBITaxon/09/NCBITaxon_9709.md +++ b/md/NCBITaxon/09/NCBITaxon_9709.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/11/NCBITaxon_33511.md b/md/NCBITaxon/11/NCBITaxon_33511.md index a80e0e91ae..4ab6900c26 100644 --- a/md/NCBITaxon/11/NCBITaxon_33511.md +++ b/md/NCBITaxon/11/NCBITaxon_33511.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/11/NCBITaxon_7711.md b/md/NCBITaxon/11/NCBITaxon_7711.md index d798d54a86..b328e06287 100644 --- a/md/NCBITaxon/11/NCBITaxon_7711.md +++ b/md/NCBITaxon/11/NCBITaxon_7711.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/11/NCBITaxon_9611.md b/md/NCBITaxon/11/NCBITaxon_9611.md index fffe329716..b09b3736eb 100644 --- a/md/NCBITaxon/11/NCBITaxon_9611.md +++ b/md/NCBITaxon/11/NCBITaxon_9611.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/12/NCBITaxon_37512.md b/md/NCBITaxon/12/NCBITaxon_37512.md index 2ba434333e..d4140bea5d 100644 --- a/md/NCBITaxon/12/NCBITaxon_37512.md +++ b/md/NCBITaxon/12/NCBITaxon_37512.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/12/NCBITaxon_7712.md b/md/NCBITaxon/12/NCBITaxon_7712.md index 928971d7cd..c59d1b2d9a 100644 --- a/md/NCBITaxon/12/NCBITaxon_7712.md +++ b/md/NCBITaxon/12/NCBITaxon_7712.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/12/NCBITaxon_85512.md b/md/NCBITaxon/12/NCBITaxon_85512.md index 7116f1a5d2..b857731753 100644 --- a/md/NCBITaxon/12/NCBITaxon_85512.md +++ b/md/NCBITaxon/12/NCBITaxon_85512.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/12/NCBITaxon_9312.md b/md/NCBITaxon/12/NCBITaxon_9312.md index 47cafc38fa..a72722f4fe 100644 --- a/md/NCBITaxon/12/NCBITaxon_9312.md +++ b/md/NCBITaxon/12/NCBITaxon_9312.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/13/NCBITaxon_33213.md b/md/NCBITaxon/13/NCBITaxon_33213.md index 0142603ed2..b5cac470de 100644 --- a/md/NCBITaxon/13/NCBITaxon_33213.md +++ b/md/NCBITaxon/13/NCBITaxon_33213.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/13/NCBITaxon_376913.md b/md/NCBITaxon/13/NCBITaxon_376913.md index 6350f11749..659c7826df 100644 --- a/md/NCBITaxon/13/NCBITaxon_376913.md +++ b/md/NCBITaxon/13/NCBITaxon_376913.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/13/NCBITaxon_7713.md b/md/NCBITaxon/13/NCBITaxon_7713.md index 54d4a873d9..496ea79992 100644 --- a/md/NCBITaxon/13/NCBITaxon_7713.md +++ b/md/NCBITaxon/13/NCBITaxon_7713.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/14/NCBITaxon_10114.md b/md/NCBITaxon/14/NCBITaxon_10114.md index bb308e40eb..277199578e 100644 --- a/md/NCBITaxon/14/NCBITaxon_10114.md +++ b/md/NCBITaxon/14/NCBITaxon_10114.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/15/NCBITaxon_110815.md b/md/NCBITaxon/15/NCBITaxon_110815.md index 4d52d32249..db7fd189c3 100644 --- a/md/NCBITaxon/15/NCBITaxon_110815.md +++ b/md/NCBITaxon/15/NCBITaxon_110815.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/16/NCBITaxon_9816.md b/md/NCBITaxon/16/NCBITaxon_9816.md index 06dc5f0eb4..d29693ccf7 100644 --- a/md/NCBITaxon/16/NCBITaxon_9816.md +++ b/md/NCBITaxon/16/NCBITaxon_9816.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/17/NCBITaxon_32517.md b/md/NCBITaxon/17/NCBITaxon_32517.md index 33160b9339..ee212c8b54 100644 --- a/md/NCBITaxon/17/NCBITaxon_32517.md +++ b/md/NCBITaxon/17/NCBITaxon_32517.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/17/NCBITaxon_33317.md b/md/NCBITaxon/17/NCBITaxon_33317.md index 8fd7a7f145..c1f0099bde 100644 --- a/md/NCBITaxon/17/NCBITaxon_33317.md +++ b/md/NCBITaxon/17/NCBITaxon_33317.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/17/NCBITaxon_6217.md b/md/NCBITaxon/17/NCBITaxon_6217.md index aae38e2cad..68deda8436 100644 --- a/md/NCBITaxon/17/NCBITaxon_6217.md +++ b/md/NCBITaxon/17/NCBITaxon_6217.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/19/NCBITaxon_10219.md b/md/NCBITaxon/19/NCBITaxon_10219.md index 2418fcbcfd..0b1a476ea8 100644 --- a/md/NCBITaxon/19/NCBITaxon_10219.md +++ b/md/NCBITaxon/19/NCBITaxon_10219.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/19/NCBITaxon_32519.md b/md/NCBITaxon/19/NCBITaxon_32519.md index 11e72a7446..553074259c 100644 --- a/md/NCBITaxon/19/NCBITaxon_32519.md +++ b/md/NCBITaxon/19/NCBITaxon_32519.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/21/NCBITaxon_9321.md b/md/NCBITaxon/21/NCBITaxon_9321.md index 27eba5e612..0f994ba560 100644 --- a/md/NCBITaxon/21/NCBITaxon_9321.md +++ b/md/NCBITaxon/21/NCBITaxon_9321.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/21/NCBITaxon_9721.md b/md/NCBITaxon/21/NCBITaxon_9721.md index 4aae4b837c..1610ec1b8a 100644 --- a/md/NCBITaxon/21/NCBITaxon_9721.md +++ b/md/NCBITaxon/21/NCBITaxon_9721.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/21/NCBITaxon_9821.md b/md/NCBITaxon/21/NCBITaxon_9821.md index cb80ba3328..de88dfe564 100644 --- a/md/NCBITaxon/21/NCBITaxon_9821.md +++ b/md/NCBITaxon/21/NCBITaxon_9821.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/22/NCBITaxon_31022.md b/md/NCBITaxon/22/NCBITaxon_31022.md index 5aa2c2a397..c3fbf3cc98 100644 --- a/md/NCBITaxon/22/NCBITaxon_31022.md +++ b/md/NCBITaxon/22/NCBITaxon_31022.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/22/NCBITaxon_9822.md b/md/NCBITaxon/22/NCBITaxon_9822.md index 10ae354cdc..46ce15f564 100644 --- a/md/NCBITaxon/22/NCBITaxon_9822.md +++ b/md/NCBITaxon/22/NCBITaxon_9822.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/23/NCBITaxon_186623.md b/md/NCBITaxon/23/NCBITaxon_186623.md index cbc2a83035..8ff936f4ba 100644 --- a/md/NCBITaxon/23/NCBITaxon_186623.md +++ b/md/NCBITaxon/23/NCBITaxon_186623.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/23/NCBITaxon_32523.md b/md/NCBITaxon/23/NCBITaxon_32523.md index 47cdfaa0cb..ffdef80f94 100644 --- a/md/NCBITaxon/23/NCBITaxon_32523.md +++ b/md/NCBITaxon/23/NCBITaxon_32523.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/24/NCBITaxon_186624.md b/md/NCBITaxon/24/NCBITaxon_186624.md index 0080bf4962..bfd3f90cde 100644 --- a/md/NCBITaxon/24/NCBITaxon_186624.md +++ b/md/NCBITaxon/24/NCBITaxon_186624.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/24/NCBITaxon_32524.md b/md/NCBITaxon/24/NCBITaxon_32524.md index 3050efc768..f75d561bd9 100644 --- a/md/NCBITaxon/24/NCBITaxon_32524.md +++ b/md/NCBITaxon/24/NCBITaxon_32524.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/24/NCBITaxon_41324.md b/md/NCBITaxon/24/NCBITaxon_41324.md index 7c119cf471..73d32ce897 100644 --- a/md/NCBITaxon/24/NCBITaxon_41324.md +++ b/md/NCBITaxon/24/NCBITaxon_41324.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/24/NCBITaxon_7624.md b/md/NCBITaxon/24/NCBITaxon_7624.md index 439019b71d..9379d07738 100644 --- a/md/NCBITaxon/24/NCBITaxon_7624.md +++ b/md/NCBITaxon/24/NCBITaxon_7624.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/25/NCBITaxon_186625.md b/md/NCBITaxon/25/NCBITaxon_186625.md index 5b3817809b..bcf18cca08 100644 --- a/md/NCBITaxon/25/NCBITaxon_186625.md +++ b/md/NCBITaxon/25/NCBITaxon_186625.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/25/NCBITaxon_32525.md b/md/NCBITaxon/25/NCBITaxon_32525.md index ebdce9e96d..851bca415b 100644 --- a/md/NCBITaxon/25/NCBITaxon_32525.md +++ b/md/NCBITaxon/25/NCBITaxon_32525.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/25/NCBITaxon_6425.md b/md/NCBITaxon/25/NCBITaxon_6425.md index e5ef2b45c5..6bbe01df9e 100644 --- a/md/NCBITaxon/25/NCBITaxon_6425.md +++ b/md/NCBITaxon/25/NCBITaxon_6425.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/25/NCBITaxon_7625.md b/md/NCBITaxon/25/NCBITaxon_7625.md index 6eeb8d0e87..ebcfd9a0d6 100644 --- a/md/NCBITaxon/25/NCBITaxon_7625.md +++ b/md/NCBITaxon/25/NCBITaxon_7625.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/25/NCBITaxon_8825.md b/md/NCBITaxon/25/NCBITaxon_8825.md index 45d7f7fb40..02d689cc6f 100644 --- a/md/NCBITaxon/25/NCBITaxon_8825.md +++ b/md/NCBITaxon/25/NCBITaxon_8825.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/26/NCBITaxon_186626.md b/md/NCBITaxon/26/NCBITaxon_186626.md index b66f07bb04..05ac88c1b6 100644 --- a/md/NCBITaxon/26/NCBITaxon_186626.md +++ b/md/NCBITaxon/26/NCBITaxon_186626.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/26/NCBITaxon_9526.md b/md/NCBITaxon/26/NCBITaxon_9526.md index 9aa4de8ceb..0ddbbf4e18 100644 --- a/md/NCBITaxon/26/NCBITaxon_9526.md +++ b/md/NCBITaxon/26/NCBITaxon_9526.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/27/NCBITaxon_186627.md b/md/NCBITaxon/27/NCBITaxon_186627.md index d44f6000e2..8898747a48 100644 --- a/md/NCBITaxon/27/NCBITaxon_186627.md +++ b/md/NCBITaxon/27/NCBITaxon_186627.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/27/NCBITaxon_30727.md b/md/NCBITaxon/27/NCBITaxon_30727.md index 60b63f1b3a..aaf58dd182 100644 --- a/md/NCBITaxon/27/NCBITaxon_30727.md +++ b/md/NCBITaxon/27/NCBITaxon_30727.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/27/NCBITaxon_8827.md b/md/NCBITaxon/27/NCBITaxon_8827.md index 49746a2ef0..1af3186d29 100644 --- a/md/NCBITaxon/27/NCBITaxon_8827.md +++ b/md/NCBITaxon/27/NCBITaxon_8827.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/28/NCBITaxon_31028.md b/md/NCBITaxon/28/NCBITaxon_31028.md index 2d0ae727ce..2720cf23fc 100644 --- a/md/NCBITaxon/28/NCBITaxon_31028.md +++ b/md/NCBITaxon/28/NCBITaxon_31028.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/30/NCBITaxon_6830.md b/md/NCBITaxon/30/NCBITaxon_6830.md index 22e1dbe2f5..be467f2646 100644 --- a/md/NCBITaxon/30/NCBITaxon_6830.md +++ b/md/NCBITaxon/30/NCBITaxon_6830.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/30/NCBITaxon_9030.md b/md/NCBITaxon/30/NCBITaxon_9030.md index e0102c1a17..f6347125d3 100644 --- a/md/NCBITaxon/30/NCBITaxon_9030.md +++ b/md/NCBITaxon/30/NCBITaxon_9030.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/31/NCBITaxon_104431.md b/md/NCBITaxon/31/NCBITaxon_104431.md index 89e9517682..bba8f764e8 100644 --- a/md/NCBITaxon/31/NCBITaxon_104431.md +++ b/md/NCBITaxon/31/NCBITaxon_104431.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/31/NCBITaxon_31031.md b/md/NCBITaxon/31/NCBITaxon_31031.md index f89bb5df7a..04fab9e968 100644 --- a/md/NCBITaxon/31/NCBITaxon_31031.md +++ b/md/NCBITaxon/31/NCBITaxon_31031.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/31/NCBITaxon_6231.md b/md/NCBITaxon/31/NCBITaxon_6231.md index 390ee0af39..6a8dbaa9f6 100644 --- a/md/NCBITaxon/31/NCBITaxon_6231.md +++ b/md/NCBITaxon/31/NCBITaxon_6231.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/31/NCBITaxon_9031.md b/md/NCBITaxon/31/NCBITaxon_9031.md index 503020b99b..ee687e68de 100644 --- a/md/NCBITaxon/31/NCBITaxon_9031.md +++ b/md/NCBITaxon/31/NCBITaxon_9031.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/32/NCBITaxon_31032.md b/md/NCBITaxon/32/NCBITaxon_31032.md index 9c769d93d3..6fe2ef395b 100644 --- a/md/NCBITaxon/32/NCBITaxon_31032.md +++ b/md/NCBITaxon/32/NCBITaxon_31032.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/33/NCBITaxon_31033.md b/md/NCBITaxon/33/NCBITaxon_31033.md index b141b8835f..899d4e2a46 100644 --- a/md/NCBITaxon/33/NCBITaxon_31033.md +++ b/md/NCBITaxon/33/NCBITaxon_31033.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/34/NCBITaxon_186634.md b/md/NCBITaxon/34/NCBITaxon_186634.md index 024013eb19..4b6dd265d6 100644 --- a/md/NCBITaxon/34/NCBITaxon_186634.md +++ b/md/NCBITaxon/34/NCBITaxon_186634.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/34/NCBITaxon_9834.md b/md/NCBITaxon/34/NCBITaxon_9834.md index 00fe643d16..fb24c3b038 100644 --- a/md/NCBITaxon/34/NCBITaxon_9834.md +++ b/md/NCBITaxon/34/NCBITaxon_9834.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/35/NCBITaxon_7735.md b/md/NCBITaxon/35/NCBITaxon_7735.md index 3b4b1e73f2..ff604b229a 100644 --- a/md/NCBITaxon/35/NCBITaxon_7735.md +++ b/md/NCBITaxon/35/NCBITaxon_7735.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/35/NCBITaxon_9835.md b/md/NCBITaxon/35/NCBITaxon_9835.md index 67862fb3bb..70f88efc83 100644 --- a/md/NCBITaxon/35/NCBITaxon_9835.md +++ b/md/NCBITaxon/35/NCBITaxon_9835.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/36/NCBITaxon_7736.md b/md/NCBITaxon/36/NCBITaxon_7736.md index 9ee659e098..6a9ac41121 100644 --- a/md/NCBITaxon/36/NCBITaxon_7736.md +++ b/md/NCBITaxon/36/NCBITaxon_7736.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/36/NCBITaxon_9836.md b/md/NCBITaxon/36/NCBITaxon_9836.md index eea617873d..0fe773586f 100644 --- a/md/NCBITaxon/36/NCBITaxon_9836.md +++ b/md/NCBITaxon/36/NCBITaxon_9836.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/37/NCBITaxon_51337.md b/md/NCBITaxon/37/NCBITaxon_51337.md index 28b02c1433..9a5d78cd5c 100644 --- a/md/NCBITaxon/37/NCBITaxon_51337.md +++ b/md/NCBITaxon/37/NCBITaxon_51337.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/37/NCBITaxon_72037.md b/md/NCBITaxon/37/NCBITaxon_72037.md index 22c39d8dc6..3e97a58bcc 100644 --- a/md/NCBITaxon/37/NCBITaxon_72037.md +++ b/md/NCBITaxon/37/NCBITaxon_72037.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/37/NCBITaxon_7737.md b/md/NCBITaxon/37/NCBITaxon_7737.md index 7be3eeceb6..e084f2e935 100644 --- a/md/NCBITaxon/37/NCBITaxon_7737.md +++ b/md/NCBITaxon/37/NCBITaxon_7737.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/39/NCBITaxon_186839.md b/md/NCBITaxon/39/NCBITaxon_186839.md index 8bbefddcc6..ae167b01a8 100644 --- a/md/NCBITaxon/39/NCBITaxon_186839.md +++ b/md/NCBITaxon/39/NCBITaxon_186839.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/40/NCBITaxon_33340.md b/md/NCBITaxon/40/NCBITaxon_33340.md index ecf048d8da..1575e38686 100644 --- a/md/NCBITaxon/40/NCBITaxon_33340.md +++ b/md/NCBITaxon/40/NCBITaxon_33340.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/40/NCBITaxon_6040.md b/md/NCBITaxon/40/NCBITaxon_6040.md index ad0a7db961..8bd428f627 100644 --- a/md/NCBITaxon/40/NCBITaxon_6040.md +++ b/md/NCBITaxon/40/NCBITaxon_6040.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/40/NCBITaxon_6340.md b/md/NCBITaxon/40/NCBITaxon_6340.md index 514db119c0..71022bcf46 100644 --- a/md/NCBITaxon/40/NCBITaxon_6340.md +++ b/md/NCBITaxon/40/NCBITaxon_6340.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/41/NCBITaxon_6341.md b/md/NCBITaxon/41/NCBITaxon_6341.md index fcc235789d..755d8eb993 100644 --- a/md/NCBITaxon/41/NCBITaxon_6341.md +++ b/md/NCBITaxon/41/NCBITaxon_6341.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/42/NCBITaxon_7742.md b/md/NCBITaxon/42/NCBITaxon_7742.md index 72c66a730c..ac62d85fa3 100644 --- a/md/NCBITaxon/42/NCBITaxon_7742.md +++ b/md/NCBITaxon/42/NCBITaxon_7742.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/42/NCBITaxon_8342.md b/md/NCBITaxon/42/NCBITaxon_8342.md index 1f2f791e24..494d2697bd 100644 --- a/md/NCBITaxon/42/NCBITaxon_8342.md +++ b/md/NCBITaxon/42/NCBITaxon_8342.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/43/NCBITaxon_32443.md b/md/NCBITaxon/43/NCBITaxon_32443.md index 9de787e9a5..e1f1fc99d2 100644 --- a/md/NCBITaxon/43/NCBITaxon_32443.md +++ b/md/NCBITaxon/43/NCBITaxon_32443.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/43/NCBITaxon_6843.md b/md/NCBITaxon/43/NCBITaxon_6843.md index 5c4cd4c69c..13a84f3ad5 100644 --- a/md/NCBITaxon/43/NCBITaxon_6843.md +++ b/md/NCBITaxon/43/NCBITaxon_6843.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/43/NCBITaxon_9443.md b/md/NCBITaxon/43/NCBITaxon_9443.md index 1266490df1..23befe0759 100644 --- a/md/NCBITaxon/43/NCBITaxon_9443.md +++ b/md/NCBITaxon/43/NCBITaxon_9443.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/45/NCBITaxon_314145.md b/md/NCBITaxon/45/NCBITaxon_314145.md index 8913d442b3..f5ff9a2801 100644 --- a/md/NCBITaxon/45/NCBITaxon_314145.md +++ b/md/NCBITaxon/45/NCBITaxon_314145.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/45/NCBITaxon_7745.md b/md/NCBITaxon/45/NCBITaxon_7745.md index ea101ae461..16debabb4f 100644 --- a/md/NCBITaxon/45/NCBITaxon_7745.md +++ b/md/NCBITaxon/45/NCBITaxon_7745.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/45/NCBITaxon_9845.md b/md/NCBITaxon/45/NCBITaxon_9845.md index 9e31f58eb5..9fbfe49343 100644 --- a/md/NCBITaxon/45/NCBITaxon_9845.md +++ b/md/NCBITaxon/45/NCBITaxon_9845.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/46/NCBITaxon_314146.md b/md/NCBITaxon/46/NCBITaxon_314146.md index 49146dbccf..fbe4f6aa05 100644 --- a/md/NCBITaxon/46/NCBITaxon_314146.md +++ b/md/NCBITaxon/46/NCBITaxon_314146.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/46/NCBITaxon_7746.md b/md/NCBITaxon/46/NCBITaxon_7746.md index 4005b08b33..17e3675a08 100644 --- a/md/NCBITaxon/46/NCBITaxon_7746.md +++ b/md/NCBITaxon/46/NCBITaxon_7746.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/47/NCBITaxon_129947.md b/md/NCBITaxon/47/NCBITaxon_129947.md index 96fa630c18..c5d853f74b 100644 --- a/md/NCBITaxon/47/NCBITaxon_129947.md +++ b/md/NCBITaxon/47/NCBITaxon_129947.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/47/NCBITaxon_314147.md b/md/NCBITaxon/47/NCBITaxon_314147.md index 7eb6c2f3ce..219c6a1cef 100644 --- a/md/NCBITaxon/47/NCBITaxon_314147.md +++ b/md/NCBITaxon/47/NCBITaxon_314147.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/47/NCBITaxon_32447.md b/md/NCBITaxon/47/NCBITaxon_32447.md index 7fa31ce377..a9da2b2280 100644 --- a/md/NCBITaxon/47/NCBITaxon_32447.md +++ b/md/NCBITaxon/47/NCBITaxon_32447.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/47/NCBITaxon_6447.md b/md/NCBITaxon/47/NCBITaxon_6447.md index 9e7a2839c4..90e17d680c 100644 --- a/md/NCBITaxon/47/NCBITaxon_6447.md +++ b/md/NCBITaxon/47/NCBITaxon_6447.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/47/NCBITaxon_9347.md b/md/NCBITaxon/47/NCBITaxon_9347.md index 87322deef4..95bc8a1deb 100644 --- a/md/NCBITaxon/47/NCBITaxon_9347.md +++ b/md/NCBITaxon/47/NCBITaxon_9347.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/48/NCBITaxon_6448.md b/md/NCBITaxon/48/NCBITaxon_6448.md index 26ccca2a54..433accd56f 100644 --- a/md/NCBITaxon/48/NCBITaxon_6448.md +++ b/md/NCBITaxon/48/NCBITaxon_6448.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/50/NCBITaxon_9850.md b/md/NCBITaxon/50/NCBITaxon_9850.md index d7be704015..9e5da7d04b 100644 --- a/md/NCBITaxon/50/NCBITaxon_9850.md +++ b/md/NCBITaxon/50/NCBITaxon_9850.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/51/NCBITaxon_110551.md b/md/NCBITaxon/51/NCBITaxon_110551.md index bfd07d820d..2e49da376c 100644 --- a/md/NCBITaxon/51/NCBITaxon_110551.md +++ b/md/NCBITaxon/51/NCBITaxon_110551.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/51/NCBITaxon_133551.md b/md/NCBITaxon/51/NCBITaxon_133551.md index cd9a136000..a15dcc4207 100644 --- a/md/NCBITaxon/51/NCBITaxon_133551.md +++ b/md/NCBITaxon/51/NCBITaxon_133551.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/52/NCBITaxon_7952.md b/md/NCBITaxon/52/NCBITaxon_7952.md index 394b9c7168..c963646296 100644 --- a/md/NCBITaxon/52/NCBITaxon_7952.md +++ b/md/NCBITaxon/52/NCBITaxon_7952.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/53/NCBITaxon_33553.md b/md/NCBITaxon/53/NCBITaxon_33553.md index 451e9a8d2a..ff057be232 100644 --- a/md/NCBITaxon/53/NCBITaxon_33553.md +++ b/md/NCBITaxon/53/NCBITaxon_33553.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/53/NCBITaxon_7953.md b/md/NCBITaxon/53/NCBITaxon_7953.md index 134d3ecfc0..93c15c0520 100644 --- a/md/NCBITaxon/53/NCBITaxon_7953.md +++ b/md/NCBITaxon/53/NCBITaxon_7953.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/53/NCBITaxon_9753.md b/md/NCBITaxon/53/NCBITaxon_9753.md index 92575c083a..3f4a481eaf 100644 --- a/md/NCBITaxon/53/NCBITaxon_9753.md +++ b/md/NCBITaxon/53/NCBITaxon_9753.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/54/NCBITaxon_33154.md b/md/NCBITaxon/54/NCBITaxon_33154.md index 3a069f1408..2ce9c243ad 100644 --- a/md/NCBITaxon/54/NCBITaxon_33154.md +++ b/md/NCBITaxon/54/NCBITaxon_33154.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/54/NCBITaxon_33554.md b/md/NCBITaxon/54/NCBITaxon_33554.md index 61a308f6e5..04c50b6524 100644 --- a/md/NCBITaxon/54/NCBITaxon_33554.md +++ b/md/NCBITaxon/54/NCBITaxon_33554.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/54/NCBITaxon_6854.md b/md/NCBITaxon/54/NCBITaxon_6854.md index 4a1e18cc95..6efbf859c6 100644 --- a/md/NCBITaxon/54/NCBITaxon_6854.md +++ b/md/NCBITaxon/54/NCBITaxon_6854.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/54/NCBITaxon_7954.md b/md/NCBITaxon/54/NCBITaxon_7954.md index 6b63b49609..6f940bdeaf 100644 --- a/md/NCBITaxon/54/NCBITaxon_7954.md +++ b/md/NCBITaxon/54/NCBITaxon_7954.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/54/NCBITaxon_9254.md b/md/NCBITaxon/54/NCBITaxon_9254.md index 93539fb65d..f19ca8bfc9 100644 --- a/md/NCBITaxon/54/NCBITaxon_9254.md +++ b/md/NCBITaxon/54/NCBITaxon_9254.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/55/NCBITaxon_110555.md b/md/NCBITaxon/55/NCBITaxon_110555.md index b8b699e507..87d23082f1 100644 --- a/md/NCBITaxon/55/NCBITaxon_110555.md +++ b/md/NCBITaxon/55/NCBITaxon_110555.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/55/NCBITaxon_32455.md b/md/NCBITaxon/55/NCBITaxon_32455.md index 091ab9fbf9..db678e9145 100644 --- a/md/NCBITaxon/55/NCBITaxon_32455.md +++ b/md/NCBITaxon/55/NCBITaxon_32455.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/55/NCBITaxon_7955.md b/md/NCBITaxon/55/NCBITaxon_7955.md index 1b0a36471f..baac578117 100644 --- a/md/NCBITaxon/55/NCBITaxon_7955.md +++ b/md/NCBITaxon/55/NCBITaxon_7955.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/55/NCBITaxon_9255.md b/md/NCBITaxon/55/NCBITaxon_9255.md index c68b84a503..407c1d1c22 100644 --- a/md/NCBITaxon/55/NCBITaxon_9255.md +++ b/md/NCBITaxon/55/NCBITaxon_9255.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/56/NCBITaxon_6656.md b/md/NCBITaxon/56/NCBITaxon_6656.md index f362e1e0c3..c9956b72a1 100644 --- a/md/NCBITaxon/56/NCBITaxon_6656.md +++ b/md/NCBITaxon/56/NCBITaxon_6656.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/56/NCBITaxon_9256.md b/md/NCBITaxon/56/NCBITaxon_9256.md index 9e5428a9ac..bb30477288 100644 --- a/md/NCBITaxon/56/NCBITaxon_9256.md +++ b/md/NCBITaxon/56/NCBITaxon_9256.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/57/NCBITaxon_50557.md b/md/NCBITaxon/57/NCBITaxon_50557.md index 5f361cc093..514dce5825 100644 --- a/md/NCBITaxon/57/NCBITaxon_50557.md +++ b/md/NCBITaxon/57/NCBITaxon_50557.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/57/NCBITaxon_6157.md b/md/NCBITaxon/57/NCBITaxon_6157.md index 75359b6a9d..80cf2f4d67 100644 --- a/md/NCBITaxon/57/NCBITaxon_6157.md +++ b/md/NCBITaxon/57/NCBITaxon_6157.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/57/NCBITaxon_6657.md b/md/NCBITaxon/57/NCBITaxon_6657.md index 8d29e06aad..e73616d55f 100644 --- a/md/NCBITaxon/57/NCBITaxon_6657.md +++ b/md/NCBITaxon/57/NCBITaxon_6657.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/57/NCBITaxon_8457.md b/md/NCBITaxon/57/NCBITaxon_8457.md index 28e2db15dd..83377bb7c2 100644 --- a/md/NCBITaxon/57/NCBITaxon_8457.md +++ b/md/NCBITaxon/57/NCBITaxon_8457.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/57/NCBITaxon_9257.md b/md/NCBITaxon/57/NCBITaxon_9257.md index b3ba46f588..406f1314ff 100644 --- a/md/NCBITaxon/57/NCBITaxon_9257.md +++ b/md/NCBITaxon/57/NCBITaxon_9257.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/58/NCBITaxon_30458.md b/md/NCBITaxon/58/NCBITaxon_30458.md index fe0ed19f63..469777928c 100644 --- a/md/NCBITaxon/58/NCBITaxon_30458.md +++ b/md/NCBITaxon/58/NCBITaxon_30458.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/58/NCBITaxon_7858.md b/md/NCBITaxon/58/NCBITaxon_7858.md index 1a28f0b382..ed01157f29 100644 --- a/md/NCBITaxon/58/NCBITaxon_7858.md +++ b/md/NCBITaxon/58/NCBITaxon_7858.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/59/NCBITaxon_2759.md b/md/NCBITaxon/59/NCBITaxon_2759.md index f207f11b1f..880e128d55 100644 --- a/md/NCBITaxon/59/NCBITaxon_2759.md +++ b/md/NCBITaxon/59/NCBITaxon_2759.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/59/NCBITaxon_8459.md b/md/NCBITaxon/59/NCBITaxon_8459.md index 7d8e82c031..aae7691521 100644 --- a/md/NCBITaxon/59/NCBITaxon_8459.md +++ b/md/NCBITaxon/59/NCBITaxon_8459.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/59/NCBITaxon_9259.md b/md/NCBITaxon/59/NCBITaxon_9259.md index 230c7619e3..ddb9e9abb6 100644 --- a/md/NCBITaxon/59/NCBITaxon_9259.md +++ b/md/NCBITaxon/59/NCBITaxon_9259.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/59/NCBITaxon_9359.md b/md/NCBITaxon/59/NCBITaxon_9359.md index 09f781f7aa..f078613ce5 100644 --- a/md/NCBITaxon/59/NCBITaxon_9359.md +++ b/md/NCBITaxon/59/NCBITaxon_9359.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/60/NCBITaxon_6960.md b/md/NCBITaxon/60/NCBITaxon_6960.md index c94df9abc7..6726c018b3 100644 --- a/md/NCBITaxon/60/NCBITaxon_6960.md +++ b/md/NCBITaxon/60/NCBITaxon_6960.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/61/NCBITaxon_32561.md b/md/NCBITaxon/61/NCBITaxon_32561.md index e1a231fa28..4e529eef8b 100644 --- a/md/NCBITaxon/61/NCBITaxon_32561.md +++ b/md/NCBITaxon/61/NCBITaxon_32561.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/61/NCBITaxon_7761.md b/md/NCBITaxon/61/NCBITaxon_7761.md index 96c3b03cf0..e184c28dfc 100644 --- a/md/NCBITaxon/61/NCBITaxon_7761.md +++ b/md/NCBITaxon/61/NCBITaxon_7761.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/61/NCBITaxon_91561.md b/md/NCBITaxon/61/NCBITaxon_91561.md index 29a9a08c9e..8e321e043a 100644 --- a/md/NCBITaxon/61/NCBITaxon_91561.md +++ b/md/NCBITaxon/61/NCBITaxon_91561.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/61/NCBITaxon_9761.md b/md/NCBITaxon/61/NCBITaxon_9761.md index e31a48217b..a125bc7a3d 100644 --- a/md/NCBITaxon/61/NCBITaxon_9761.md +++ b/md/NCBITaxon/61/NCBITaxon_9761.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/62/NCBITaxon_197562.md b/md/NCBITaxon/62/NCBITaxon_197562.md index f9f0df091c..a7c115d726 100644 --- a/md/NCBITaxon/62/NCBITaxon_197562.md +++ b/md/NCBITaxon/62/NCBITaxon_197562.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/62/NCBITaxon_7762.md b/md/NCBITaxon/62/NCBITaxon_7762.md index 97ba347cbd..8da0f803ba 100644 --- a/md/NCBITaxon/62/NCBITaxon_7762.md +++ b/md/NCBITaxon/62/NCBITaxon_7762.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/63/NCBITaxon_197563.md b/md/NCBITaxon/63/NCBITaxon_197563.md index 2a9fa918c0..976a955bf2 100644 --- a/md/NCBITaxon/63/NCBITaxon_197563.md +++ b/md/NCBITaxon/63/NCBITaxon_197563.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/63/NCBITaxon_7863.md b/md/NCBITaxon/63/NCBITaxon_7863.md index cb422d8284..ee7c350e3b 100644 --- a/md/NCBITaxon/63/NCBITaxon_7863.md +++ b/md/NCBITaxon/63/NCBITaxon_7863.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/63/NCBITaxon_9263.md b/md/NCBITaxon/63/NCBITaxon_9263.md index 18fae0d904..ff08efbb73 100644 --- a/md/NCBITaxon/63/NCBITaxon_9263.md +++ b/md/NCBITaxon/63/NCBITaxon_9263.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/64/NCBITaxon_7864.md b/md/NCBITaxon/64/NCBITaxon_7864.md index 1d948a1d26..6aee5e1bbe 100644 --- a/md/NCBITaxon/64/NCBITaxon_7864.md +++ b/md/NCBITaxon/64/NCBITaxon_7864.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/65/NCBITaxon_117565.md b/md/NCBITaxon/65/NCBITaxon_117565.md index 445b0d701c..e7328bb65c 100644 --- a/md/NCBITaxon/65/NCBITaxon_117565.md +++ b/md/NCBITaxon/65/NCBITaxon_117565.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/65/NCBITaxon_123365.md b/md/NCBITaxon/65/NCBITaxon_123365.md index 47f921506c..f8a8bde73b 100644 --- a/md/NCBITaxon/65/NCBITaxon_123365.md +++ b/md/NCBITaxon/65/NCBITaxon_123365.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/65/NCBITaxon_41665.md b/md/NCBITaxon/65/NCBITaxon_41665.md index 38323a90d5..97b8c6247e 100644 --- a/md/NCBITaxon/65/NCBITaxon_41665.md +++ b/md/NCBITaxon/65/NCBITaxon_41665.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/66/NCBITaxon_10066.md b/md/NCBITaxon/66/NCBITaxon_10066.md index 414ca49327..fe552bd774 100644 --- a/md/NCBITaxon/66/NCBITaxon_10066.md +++ b/md/NCBITaxon/66/NCBITaxon_10066.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/66/NCBITaxon_123366.md b/md/NCBITaxon/66/NCBITaxon_123366.md index aef679f834..20f4c2043e 100644 --- a/md/NCBITaxon/66/NCBITaxon_123366.md +++ b/md/NCBITaxon/66/NCBITaxon_123366.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/66/NCBITaxon_41666.md b/md/NCBITaxon/66/NCBITaxon_41666.md index d38d0f4ce6..6bc79af692 100644 --- a/md/NCBITaxon/66/NCBITaxon_41666.md +++ b/md/NCBITaxon/66/NCBITaxon_41666.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/67/NCBITaxon_123367.md b/md/NCBITaxon/67/NCBITaxon_123367.md index 3dadbb9013..4f53c31f8a 100644 --- a/md/NCBITaxon/67/NCBITaxon_123367.md +++ b/md/NCBITaxon/67/NCBITaxon_123367.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/67/NCBITaxon_131567.md b/md/NCBITaxon/67/NCBITaxon_131567.md index 8f55743ce7..3bbd7f0f90 100644 --- a/md/NCBITaxon/67/NCBITaxon_131567.md +++ b/md/NCBITaxon/67/NCBITaxon_131567.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/67/NCBITaxon_37567.md b/md/NCBITaxon/67/NCBITaxon_37567.md index 87af424f57..b899dd5ab8 100644 --- a/md/NCBITaxon/67/NCBITaxon_37567.md +++ b/md/NCBITaxon/67/NCBITaxon_37567.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/68/NCBITaxon_123368.md b/md/NCBITaxon/68/NCBITaxon_123368.md index 81aaffe946..2f4ab87e95 100644 --- a/md/NCBITaxon/68/NCBITaxon_123368.md +++ b/md/NCBITaxon/68/NCBITaxon_123368.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/69/NCBITaxon_117569.md b/md/NCBITaxon/69/NCBITaxon_117569.md index 3ed66d64f8..2c13fb60ae 100644 --- a/md/NCBITaxon/69/NCBITaxon_117569.md +++ b/md/NCBITaxon/69/NCBITaxon_117569.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/69/NCBITaxon_123369.md b/md/NCBITaxon/69/NCBITaxon_123369.md index 9a47944a67..24ac532de3 100644 --- a/md/NCBITaxon/69/NCBITaxon_123369.md +++ b/md/NCBITaxon/69/NCBITaxon_123369.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/69/NCBITaxon_7769.md b/md/NCBITaxon/69/NCBITaxon_7769.md index ef51a99d9f..522500e136 100644 --- a/md/NCBITaxon/69/NCBITaxon_7769.md +++ b/md/NCBITaxon/69/NCBITaxon_7769.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/70/NCBITaxon_117570.md b/md/NCBITaxon/70/NCBITaxon_117570.md index 8a12e5c53b..ffe23d39f2 100644 --- a/md/NCBITaxon/70/NCBITaxon_117570.md +++ b/md/NCBITaxon/70/NCBITaxon_117570.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/70/NCBITaxon_123370.md b/md/NCBITaxon/70/NCBITaxon_123370.md index 1c7ac70cd2..d8dbf8304d 100644 --- a/md/NCBITaxon/70/NCBITaxon_123370.md +++ b/md/NCBITaxon/70/NCBITaxon_123370.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/70/NCBITaxon_8570.md b/md/NCBITaxon/70/NCBITaxon_8570.md index 1467973de5..9515004bec 100644 --- a/md/NCBITaxon/70/NCBITaxon_8570.md +++ b/md/NCBITaxon/70/NCBITaxon_8570.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/70/NCBITaxon_88770.md b/md/NCBITaxon/70/NCBITaxon_88770.md index 2cb95eecc7..91479245ed 100644 --- a/md/NCBITaxon/70/NCBITaxon_88770.md +++ b/md/NCBITaxon/70/NCBITaxon_88770.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/71/NCBITaxon_117571.md b/md/NCBITaxon/71/NCBITaxon_117571.md index aabeef3307..ff2879f9c0 100644 --- a/md/NCBITaxon/71/NCBITaxon_117571.md +++ b/md/NCBITaxon/71/NCBITaxon_117571.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/71/NCBITaxon_34971.md b/md/NCBITaxon/71/NCBITaxon_34971.md index 3321e3dee4..e1e98cd73b 100644 --- a/md/NCBITaxon/71/NCBITaxon_34971.md +++ b/md/NCBITaxon/71/NCBITaxon_34971.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/72/NCBITaxon_37572.md b/md/NCBITaxon/72/NCBITaxon_37572.md index 25f3dc838c..806a5ffc97 100644 --- a/md/NCBITaxon/72/NCBITaxon_37572.md +++ b/md/NCBITaxon/72/NCBITaxon_37572.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/72/NCBITaxon_6072.md b/md/NCBITaxon/72/NCBITaxon_6072.md index 900013464d..40051359b6 100644 --- a/md/NCBITaxon/72/NCBITaxon_6072.md +++ b/md/NCBITaxon/72/NCBITaxon_6072.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/72/NCBITaxon_9072.md b/md/NCBITaxon/72/NCBITaxon_9072.md index cc382f8198..0eeb3af1f8 100644 --- a/md/NCBITaxon/72/NCBITaxon_9072.md +++ b/md/NCBITaxon/72/NCBITaxon_9072.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/73/NCBITaxon_6073.md b/md/NCBITaxon/73/NCBITaxon_6073.md index 9782ab6d28..b6db55bad9 100644 --- a/md/NCBITaxon/73/NCBITaxon_6073.md +++ b/md/NCBITaxon/73/NCBITaxon_6073.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/73/NCBITaxon_9373.md b/md/NCBITaxon/73/NCBITaxon_9373.md index f35d0eef64..3d75ff58cf 100644 --- a/md/NCBITaxon/73/NCBITaxon_9373.md +++ b/md/NCBITaxon/73/NCBITaxon_9373.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/74/NCBITaxon_40674.md b/md/NCBITaxon/74/NCBITaxon_40674.md index aae2f0af2f..72c8e4270a 100644 --- a/md/NCBITaxon/74/NCBITaxon_40674.md +++ b/md/NCBITaxon/74/NCBITaxon_40674.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/75/NCBITaxon_8075.md b/md/NCBITaxon/75/NCBITaxon_8075.md index 07994762da..628bada6ac 100644 --- a/md/NCBITaxon/75/NCBITaxon_8075.md +++ b/md/NCBITaxon/75/NCBITaxon_8075.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/76/NCBITaxon_7776.md b/md/NCBITaxon/76/NCBITaxon_7776.md index 07fc39572c..a036a98a76 100644 --- a/md/NCBITaxon/76/NCBITaxon_7776.md +++ b/md/NCBITaxon/76/NCBITaxon_7776.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/76/NCBITaxon_8976.md b/md/NCBITaxon/76/NCBITaxon_8976.md index 56583435d0..f8d62abc94 100644 --- a/md/NCBITaxon/76/NCBITaxon_8976.md +++ b/md/NCBITaxon/76/NCBITaxon_8976.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/77/NCBITaxon_7777.md b/md/NCBITaxon/77/NCBITaxon_7777.md index 465019e646..35d5cb5bac 100644 --- a/md/NCBITaxon/77/NCBITaxon_7777.md +++ b/md/NCBITaxon/77/NCBITaxon_7777.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/78/NCBITaxon_7778.md b/md/NCBITaxon/78/NCBITaxon_7778.md index 97b007621c..f76b0695c3 100644 --- a/md/NCBITaxon/78/NCBITaxon_7778.md +++ b/md/NCBITaxon/78/NCBITaxon_7778.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/78/NCBITaxon_7878.md b/md/NCBITaxon/78/NCBITaxon_7878.md index 51c6610352..ea01affeef 100644 --- a/md/NCBITaxon/78/NCBITaxon_7878.md +++ b/md/NCBITaxon/78/NCBITaxon_7878.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/78/NCBITaxon_8578.md b/md/NCBITaxon/78/NCBITaxon_8578.md index aa6ffa4402..6592871bd7 100644 --- a/md/NCBITaxon/78/NCBITaxon_8578.md +++ b/md/NCBITaxon/78/NCBITaxon_8578.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/82/NCBITaxon_8782.md b/md/NCBITaxon/82/NCBITaxon_8782.md index 29fc8d94b0..ff3122c5fa 100644 --- a/md/NCBITaxon/82/NCBITaxon_8782.md +++ b/md/NCBITaxon/82/NCBITaxon_8782.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/84/NCBITaxon_379584.md b/md/NCBITaxon/84/NCBITaxon_379584.md index 5dffc98e59..b26120efd2 100644 --- a/md/NCBITaxon/84/NCBITaxon_379584.md +++ b/md/NCBITaxon/84/NCBITaxon_379584.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/85/NCBITaxon_32485.md b/md/NCBITaxon/85/NCBITaxon_32485.md index 5a61146906..c00d60bfab 100644 --- a/md/NCBITaxon/85/NCBITaxon_32485.md +++ b/md/NCBITaxon/85/NCBITaxon_32485.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/86/NCBITaxon_436486.md b/md/NCBITaxon/86/NCBITaxon_436486.md index b4e5bd4ab5..ae058a9a89 100644 --- a/md/NCBITaxon/86/NCBITaxon_436486.md +++ b/md/NCBITaxon/86/NCBITaxon_436486.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/86/NCBITaxon_7586.md b/md/NCBITaxon/86/NCBITaxon_7586.md index 08fbe5211f..9c7866e298 100644 --- a/md/NCBITaxon/86/NCBITaxon_7586.md +++ b/md/NCBITaxon/86/NCBITaxon_7586.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/87/NCBITaxon_337687.md b/md/NCBITaxon/87/NCBITaxon_337687.md index f84aa54f50..6ff65a6b9c 100644 --- a/md/NCBITaxon/87/NCBITaxon_337687.md +++ b/md/NCBITaxon/87/NCBITaxon_337687.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/87/NCBITaxon_8287.md b/md/NCBITaxon/87/NCBITaxon_8287.md index d37d2c6513..dde75c84e5 100644 --- a/md/NCBITaxon/87/NCBITaxon_8287.md +++ b/md/NCBITaxon/87/NCBITaxon_8287.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/87/NCBITaxon_9787.md b/md/NCBITaxon/87/NCBITaxon_9787.md index 8a31eb2053..62c33b4a77 100644 --- a/md/NCBITaxon/87/NCBITaxon_9787.md +++ b/md/NCBITaxon/87/NCBITaxon_9787.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/88/NCBITaxon_10088.md b/md/NCBITaxon/88/NCBITaxon_10088.md index 178dcb7a0a..9359ce9084 100644 --- a/md/NCBITaxon/88/NCBITaxon_10088.md +++ b/md/NCBITaxon/88/NCBITaxon_10088.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/88/NCBITaxon_7088.md b/md/NCBITaxon/88/NCBITaxon_7088.md index 3c8cc14fb0..e3a4a26d9f 100644 --- a/md/NCBITaxon/88/NCBITaxon_7088.md +++ b/md/NCBITaxon/88/NCBITaxon_7088.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/88/NCBITaxon_9788.md b/md/NCBITaxon/88/NCBITaxon_9788.md index a5c9bed9fd..92b85cac8e 100644 --- a/md/NCBITaxon/88/NCBITaxon_9788.md +++ b/md/NCBITaxon/88/NCBITaxon_9788.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/89/NCBITaxon_105389.md b/md/NCBITaxon/89/NCBITaxon_105389.md index aea9b39791..0310d80ff7 100644 --- a/md/NCBITaxon/89/NCBITaxon_105389.md +++ b/md/NCBITaxon/89/NCBITaxon_105389.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/89/NCBITaxon_34989.md b/md/NCBITaxon/89/NCBITaxon_34989.md index db6e53c846..2f42fb65a0 100644 --- a/md/NCBITaxon/89/NCBITaxon_34989.md +++ b/md/NCBITaxon/89/NCBITaxon_34989.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/89/NCBITaxon_436489.md b/md/NCBITaxon/89/NCBITaxon_436489.md index 37d70dffea..7718e11a11 100644 --- a/md/NCBITaxon/89/NCBITaxon_436489.md +++ b/md/NCBITaxon/89/NCBITaxon_436489.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/89/NCBITaxon_9989.md b/md/NCBITaxon/89/NCBITaxon_9989.md index 6b5e5bc130..8650550139 100644 --- a/md/NCBITaxon/89/NCBITaxon_9989.md +++ b/md/NCBITaxon/89/NCBITaxon_9989.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/90/NCBITaxon_10090.md b/md/NCBITaxon/90/NCBITaxon_10090.md index 18aa4d1838..fd08e4f2aa 100644 --- a/md/NCBITaxon/90/NCBITaxon_10090.md +++ b/md/NCBITaxon/90/NCBITaxon_10090.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/91/NCBITaxon_105391.md b/md/NCBITaxon/91/NCBITaxon_105391.md index b41363d3bd..258d89e4b6 100644 --- a/md/NCBITaxon/91/NCBITaxon_105391.md +++ b/md/NCBITaxon/91/NCBITaxon_105391.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/91/NCBITaxon_41191.md b/md/NCBITaxon/91/NCBITaxon_41191.md index 43bab4e539..4a85e2cb9e 100644 --- a/md/NCBITaxon/91/NCBITaxon_41191.md +++ b/md/NCBITaxon/91/NCBITaxon_41191.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/91/NCBITaxon_436491.md b/md/NCBITaxon/91/NCBITaxon_436491.md index 9200a373f2..f75bed2cb9 100644 --- a/md/NCBITaxon/91/NCBITaxon_436491.md +++ b/md/NCBITaxon/91/NCBITaxon_436491.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/92/NCBITaxon_33392.md b/md/NCBITaxon/92/NCBITaxon_33392.md index 9545cb8810..b450ddb70f 100644 --- a/md/NCBITaxon/92/NCBITaxon_33392.md +++ b/md/NCBITaxon/92/NCBITaxon_33392.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/92/NCBITaxon_436492.md b/md/NCBITaxon/92/NCBITaxon_436492.md index abb8ce7052..b0085826e3 100644 --- a/md/NCBITaxon/92/NCBITaxon_436492.md +++ b/md/NCBITaxon/92/NCBITaxon_436492.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/92/NCBITaxon_8292.md b/md/NCBITaxon/92/NCBITaxon_8292.md index c424f51df7..952de5cc88 100644 --- a/md/NCBITaxon/92/NCBITaxon_8292.md +++ b/md/NCBITaxon/92/NCBITaxon_8292.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/92/NCBITaxon_8492.md b/md/NCBITaxon/92/NCBITaxon_8492.md index 144caf7a90..8824f4219c 100644 --- a/md/NCBITaxon/92/NCBITaxon_8492.md +++ b/md/NCBITaxon/92/NCBITaxon_8492.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/92/NCBITaxon_9892.md b/md/NCBITaxon/92/NCBITaxon_9892.md index 854bd3ebaa..4412d279c2 100644 --- a/md/NCBITaxon/92/NCBITaxon_9892.md +++ b/md/NCBITaxon/92/NCBITaxon_9892.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/93/NCBITaxon_314293.md b/md/NCBITaxon/93/NCBITaxon_314293.md index d9ac8d30cc..424557c964 100644 --- a/md/NCBITaxon/93/NCBITaxon_314293.md +++ b/md/NCBITaxon/93/NCBITaxon_314293.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/93/NCBITaxon_8293.md b/md/NCBITaxon/93/NCBITaxon_8293.md index 666bbc1638..1e4d7d8d89 100644 --- a/md/NCBITaxon/93/NCBITaxon_8293.md +++ b/md/NCBITaxon/93/NCBITaxon_8293.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/93/NCBITaxon_8493.md b/md/NCBITaxon/93/NCBITaxon_8493.md index 628d605aa2..1bc9afb80d 100644 --- a/md/NCBITaxon/93/NCBITaxon_8493.md +++ b/md/NCBITaxon/93/NCBITaxon_8493.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/93/NCBITaxon_89593.md b/md/NCBITaxon/93/NCBITaxon_89593.md index ae7ec697e0..976e84c4bf 100644 --- a/md/NCBITaxon/93/NCBITaxon_89593.md +++ b/md/NCBITaxon/93/NCBITaxon_89593.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/95/NCBITaxon_314295.md b/md/NCBITaxon/95/NCBITaxon_314295.md index 6b0d196fde..3af3293a99 100644 --- a/md/NCBITaxon/95/NCBITaxon_314295.md +++ b/md/NCBITaxon/95/NCBITaxon_314295.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/96/NCBITaxon_41196.md b/md/NCBITaxon/96/NCBITaxon_41196.md index 8f244a3d45..d7af661e92 100644 --- a/md/NCBITaxon/96/NCBITaxon_41196.md +++ b/md/NCBITaxon/96/NCBITaxon_41196.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/96/NCBITaxon_7496.md b/md/NCBITaxon/96/NCBITaxon_7496.md index 8f0a5cdf38..8236ead519 100644 --- a/md/NCBITaxon/96/NCBITaxon_7496.md +++ b/md/NCBITaxon/96/NCBITaxon_7496.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/97/NCBITaxon_35497.md b/md/NCBITaxon/97/NCBITaxon_35497.md index 64302d37c4..da89860296 100644 --- a/md/NCBITaxon/97/NCBITaxon_35497.md +++ b/md/NCBITaxon/97/NCBITaxon_35497.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/97/NCBITaxon_41197.md b/md/NCBITaxon/97/NCBITaxon_41197.md index 9b0e19aa89..e1ffcc14e5 100644 --- a/md/NCBITaxon/97/NCBITaxon_41197.md +++ b/md/NCBITaxon/97/NCBITaxon_41197.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/98/NCBITaxon_207598.md b/md/NCBITaxon/98/NCBITaxon_207598.md index 2013602834..97a1cf39d9 100644 --- a/md/NCBITaxon/98/NCBITaxon_207598.md +++ b/md/NCBITaxon/98/NCBITaxon_207598.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/98/NCBITaxon_7898.md b/md/NCBITaxon/98/NCBITaxon_7898.md index 946155a8df..384e1e5481 100644 --- a/md/NCBITaxon/98/NCBITaxon_7898.md +++ b/md/NCBITaxon/98/NCBITaxon_7898.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/99/NCBITaxon_147099.md b/md/NCBITaxon/99/NCBITaxon_147099.md index d29ad23db9..6b2fd0de9e 100644 --- a/md/NCBITaxon/99/NCBITaxon_147099.md +++ b/md/NCBITaxon/99/NCBITaxon_147099.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/NCBITaxon/_1/NCBITaxon_1.md b/md/NCBITaxon/_1/NCBITaxon_1.md index 6042dbdeb5..5185852028 100644 --- a/md/NCBITaxon/_1/NCBITaxon_1.md +++ b/md/NCBITaxon/_1/NCBITaxon_1.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/01/PATO_0000001.md b/md/PATO/01/PATO_0000001.md index b79a6f62c1..54216b14a5 100644 --- a/md/PATO/01/PATO_0000001.md +++ b/md/PATO/01/PATO_0000001.md @@ -25,5 +25,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/04/PATO_0000404.md b/md/PATO/04/PATO_0000404.md index 54804f709c..80be8b1bcd 100644 --- a/md/PATO/04/PATO_0000404.md +++ b/md/PATO/04/PATO_0000404.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/04/PATO_0001404.md b/md/PATO/04/PATO_0001404.md index 3fbbfdfba5..f640d926b6 100644 --- a/md/PATO/04/PATO_0001404.md +++ b/md/PATO/04/PATO_0001404.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/05/PATO_0001405.md b/md/PATO/05/PATO_0001405.md index 359fef917e..7896b6e550 100644 --- a/md/PATO/05/PATO_0001405.md +++ b/md/PATO/05/PATO_0001405.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/05/PATO_0002505.md b/md/PATO/05/PATO_0002505.md index 9fa0fd341a..dcbdd35618 100644 --- a/md/PATO/05/PATO_0002505.md +++ b/md/PATO/05/PATO_0002505.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/07/PATO_0001407.md b/md/PATO/07/PATO_0001407.md index e0922e4b2c..613eefd101 100644 --- a/md/PATO/07/PATO_0001407.md +++ b/md/PATO/07/PATO_0001407.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/07/PATO_0002007.md b/md/PATO/07/PATO_0002007.md index f3a31a9f9f..1d5b6a42ed 100644 --- a/md/PATO/07/PATO_0002007.md +++ b/md/PATO/07/PATO_0002007.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/08/PATO_0000608.md b/md/PATO/08/PATO_0000608.md index 766eb6fda9..06cb4c3588 100644 --- a/md/PATO/08/PATO_0000608.md +++ b/md/PATO/08/PATO_0000608.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/08/PATO_0001908.md b/md/PATO/08/PATO_0001908.md index 0d746848a4..d0fad9b1f3 100644 --- a/md/PATO/08/PATO_0001908.md +++ b/md/PATO/08/PATO_0001908.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/10/PATO_0000610.md b/md/PATO/10/PATO_0000610.md index b91ab04c00..4fb4394980 100644 --- a/md/PATO/10/PATO_0000610.md +++ b/md/PATO/10/PATO_0000610.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/14/PATO_0002014.md b/md/PATO/14/PATO_0002014.md index 4a9fbf5cfb..c1840cf6e4 100644 --- a/md/PATO/14/PATO_0002014.md +++ b/md/PATO/14/PATO_0002014.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/15/PATO_0000415.md b/md/PATO/15/PATO_0000415.md index f57cf7bc79..55d634e486 100644 --- a/md/PATO/15/PATO_0000415.md +++ b/md/PATO/15/PATO_0000415.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/18/PATO_0001018.md b/md/PATO/18/PATO_0001018.md index e3a9d38d4a..af9aa975aa 100644 --- a/md/PATO/18/PATO_0001018.md +++ b/md/PATO/18/PATO_0001018.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/22/PATO_0001422.md b/md/PATO/22/PATO_0001422.md index e128648b16..cd111a8b29 100644 --- a/md/PATO/22/PATO_0001422.md +++ b/md/PATO/22/PATO_0001422.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/36/PATO_0000136.md b/md/PATO/36/PATO_0000136.md index f3936a8c50..c7e62c9fed 100644 --- a/md/PATO/36/PATO_0000136.md +++ b/md/PATO/36/PATO_0000136.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/36/PATO_0001736.md b/md/PATO/36/PATO_0001736.md index 4b6cbb3706..f0b5fb06be 100644 --- a/md/PATO/36/PATO_0001736.md +++ b/md/PATO/36/PATO_0001736.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/41/PATO_0000141.md b/md/PATO/41/PATO_0000141.md index d89d342d43..669d36ada7 100644 --- a/md/PATO/41/PATO_0000141.md +++ b/md/PATO/41/PATO_0000141.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/41/PATO_0001241.md b/md/PATO/41/PATO_0001241.md index 97cba8b346..3e513f18fc 100644 --- a/md/PATO/41/PATO_0001241.md +++ b/md/PATO/41/PATO_0001241.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/46/PATO_0001546.md b/md/PATO/46/PATO_0001546.md index d3b3098e78..7fb859a029 100644 --- a/md/PATO/46/PATO_0001546.md +++ b/md/PATO/46/PATO_0001546.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/51/PATO_0000051.md b/md/PATO/51/PATO_0000051.md index 11696d191c..783684b580 100644 --- a/md/PATO/51/PATO_0000051.md +++ b/md/PATO/51/PATO_0000051.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/52/PATO_0000052.md b/md/PATO/52/PATO_0000052.md index 1b09a4ba47..474de3eec7 100644 --- a/md/PATO/52/PATO_0000052.md +++ b/md/PATO/52/PATO_0000052.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/61/PATO_0000261.md b/md/PATO/61/PATO_0000261.md index e1ee0b0459..ff6eb28555 100644 --- a/md/PATO/61/PATO_0000261.md +++ b/md/PATO/61/PATO_0000261.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/66/PATO_0002266.md b/md/PATO/66/PATO_0002266.md index 3d0648ca73..348c98da4b 100644 --- a/md/PATO/66/PATO_0002266.md +++ b/md/PATO/66/PATO_0002266.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/69/PATO_0000169.md b/md/PATO/69/PATO_0000169.md index 2b7d1d2495..81f6563ca5 100644 --- a/md/PATO/69/PATO_0000169.md +++ b/md/PATO/69/PATO_0000169.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/73/PATO_0001873.md b/md/PATO/73/PATO_0001873.md index 68ca71a007..ba14ebcb4d 100644 --- a/md/PATO/73/PATO_0001873.md +++ b/md/PATO/73/PATO_0001873.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/78/PATO_0002078.md b/md/PATO/78/PATO_0002078.md index 9b454c19e7..ec012eff52 100644 --- a/md/PATO/78/PATO_0002078.md +++ b/md/PATO/78/PATO_0002078.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/85/PATO_0001185.md b/md/PATO/85/PATO_0001185.md index e91b0e509f..cff9fa509c 100644 --- a/md/PATO/85/PATO_0001185.md +++ b/md/PATO/85/PATO_0001185.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/87/PATO_0001187.md b/md/PATO/87/PATO_0001187.md index acd48586c6..6895f6ef1d 100644 --- a/md/PATO/87/PATO_0001187.md +++ b/md/PATO/87/PATO_0001187.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/87/PATO_0001987.md b/md/PATO/87/PATO_0001987.md index cf20e752eb..e05c2af3aa 100644 --- a/md/PATO/87/PATO_0001987.md +++ b/md/PATO/87/PATO_0001987.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/88/PATO_0000588.md b/md/PATO/88/PATO_0000588.md index b167892d07..e20f4a3bbb 100644 --- a/md/PATO/88/PATO_0000588.md +++ b/md/PATO/88/PATO_0000588.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/90/PATO_0001190.md b/md/PATO/90/PATO_0001190.md index 7bdae8662c..b347a2de8b 100644 --- a/md/PATO/90/PATO_0001190.md +++ b/md/PATO/90/PATO_0001190.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/94/PATO_0001794.md b/md/PATO/94/PATO_0001794.md index 8f7cba665a..54e522fbb5 100644 --- a/md/PATO/94/PATO_0001794.md +++ b/md/PATO/94/PATO_0001794.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/95/PATO_0001995.md b/md/PATO/95/PATO_0001995.md index f8851630da..6b1bde5ad2 100644 --- a/md/PATO/95/PATO_0001995.md +++ b/md/PATO/95/PATO_0001995.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/96/PATO_0001396.md b/md/PATO/96/PATO_0001396.md index 7ac9230f46..838220f0b0 100644 --- a/md/PATO/96/PATO_0001396.md +++ b/md/PATO/96/PATO_0001396.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PATO/98/PATO_0002198.md b/md/PATO/98/PATO_0002198.md index 940d693624..396f365c44 100644 --- a/md/PATO/98/PATO_0002198.md +++ b/md/PATO/98/PATO_0002198.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/01/PR_000000001.md b/md/PR/01/PR_000000001.md index 9ce0464d4b..9a1321d2a8 100644 --- a/md/PR/01/PR_000000001.md +++ b/md/PR/01/PR_000000001.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/22/PR_000027222.md b/md/PR/22/PR_000027222.md index 070ff4c245..97552c159c 100644 --- a/md/PR/22/PR_000027222.md +++ b/md/PR/22/PR_000027222.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/36/PR_000007636.md b/md/PR/36/PR_000007636.md index 08f9274675..4411f27c86 100644 --- a/md/PR/36/PR_000007636.md +++ b/md/PR/36/PR_000007636.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/41/PR_000014841.md b/md/PR/41/PR_000014841.md index 973a2f73ae..9d3f05f40d 100644 --- a/md/PR/41/PR_000014841.md +++ b/md/PR/41/PR_000014841.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/57/PR_000015557.md b/md/PR/57/PR_000015557.md index a59cb6d978..b41fd44e3a 100644 --- a/md/PR/57/PR_000015557.md +++ b/md/PR/57/PR_000015557.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/58/PR_000015658.md b/md/PR/58/PR_000015658.md index 58798353a0..57abefbc60 100644 --- a/md/PR/58/PR_000015658.md +++ b/md/PR/58/PR_000015658.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/63/PR_000018263.md b/md/PR/63/PR_000018263.md index 8ceca8783a..9515b9bca3 100644 --- a/md/PR/63/PR_000018263.md +++ b/md/PR/63/PR_000018263.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/83/PR_000016283.md b/md/PR/83/PR_000016283.md index 37193c260e..a14381a597 100644 --- a/md/PR/83/PR_000016283.md +++ b/md/PR/83/PR_000016283.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/PR/99/PR_000007499.md b/md/PR/99/PR_000007499.md index 7af285d01c..abf212f22e 100644 --- a/md/PR/99/PR_000007499.md +++ b/md/PR/99/PR_000007499.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_0000000.md b/md/UBERON/00/UBERON_0000000.md index a28159f838..fb6d95de4f 100644 --- a/md/UBERON/00/UBERON_0000000.md +++ b/md/UBERON/00/UBERON_0000000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000000 * *Label* = processual entity - * *Definition* = An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + span:ProcessualEntity] + * *Definition* = An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = span:ProcessualEntity ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0000100.md b/md/UBERON/00/UBERON_0000100.md index 675a33a970..bc1dbe30f8 100644 --- a/md/UBERON/00/UBERON_0000100.md +++ b/md/UBERON/00/UBERON_0000100.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000100 * *Label* = blastopore - * *Definition* = Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastopore] + * *Definition* = Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastopore ] * *Comment* = In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus ## Synonyms @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0000200.md b/md/UBERON/00/UBERON_0000200.md index fc3f76cacb..09e7b92ada 100644 --- a/md/UBERON/00/UBERON_0000200.md +++ b/md/UBERON/00/UBERON_0000200.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000200 * *Label* = gyrus - * *Definition* = A ridge on the cerebral cortex. It is generally surrounded by one or more sulci . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gyrus] + * *Definition* = A ridge on the cerebral cortex. It is generally surrounded by one or more sulci . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gyrus ] ## Synonyms - * cerebral gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002495] - * gyrus of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83874] - * neuraxis gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83874] - * gyri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002495[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * gyri of cerebrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002495[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * gyrus of cerebrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002495] + * cerebral gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002495 ] + * gyrus of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83874 ] + * neuraxis gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83874 ] + * gyri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002495, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * gyri of cerebrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002495, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * gyrus of cerebrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002495 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:83874 * NeuroNames:1211 * SCTID:279165009 - * UMLS:C0458308 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Gyrus] + * UMLS:C0458308 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Gyrus ] * Wikipedia:Gyrus * ncithesaurus:Cerebral_Gyrus @@ -44,8 +44,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_72015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0000400.md b/md/UBERON/00/UBERON_0000400.md index 310f46fcf0..041d25f3a5 100644 --- a/md/UBERON/00/UBERON_0000400.md +++ b/md/UBERON/00/UBERON_0000400.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000400 * *Label* = jejunal epithelium - * *Definition* = An epithelium that is part of a jejunum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a jejunum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001000.md b/md/UBERON/00/UBERON_0001000.md index ab0ffac657..15987213a9 100644 --- a/md/UBERON/00/UBERON_0001000.md +++ b/md/UBERON/00/UBERON_0001000.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001000 * *Label* = vas deferens - * *Definition* = duct that transports sperm from the testis. In mammals this is from the epididymis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vas_deferens] + * *Definition* = duct that transports sperm from the testis. In mammals this is from the epididymis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vas_deferens ] * *Comment* = Taxon notes (from WP): Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall. ## Synonyms * deferent duct - * ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vas_deferens] + * ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vas_deferens ] * vas deferen * sperm duct * vasa deferentia @@ -28,7 +28,7 @@ * MIAA:0000129 * OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA * SCTID:245467009 - * UMLS:C0042360 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vas_Deferens] + * UMLS:C0042360 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vas_Deferens ] * VHOG:0001135 * Wikipedia:Vas_deferens * galen:VasDeferens @@ -62,8 +62,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The continuation of the archinephric duct, now called the deferent duct, extends caudally to the cloaca or to the part of the mammalian urethra that is derived from the cloaca.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001100.md b/md/UBERON/00/UBERON_0001100.md index b6750813cd..eeee43d526 100644 --- a/md/UBERON/00/UBERON_0001100.md +++ b/md/UBERON/00/UBERON_0001100.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001100 * *Label* = pectoralis minor - * *Definition* = The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoralis_minor_muscle] + * *Definition* = The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoralis_minor_muscle ] ## Synonyms * pectoralis minor muscle - * supracoracoideus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * supracoracoideus muscle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * musculus pectoralis minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoralis_minor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * supracoracoideus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * supracoracoideus muscle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * musculus pectoralis minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoralis_minor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:13109 * MA:0002355 * SCTID:181625002 - * UMLS:C0224347 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pectoralis_Minor] + * UMLS:C0224347 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pectoralis_Minor ] * VHOG:0000902 * Wikipedia:Pectoralis_minor_muscle * http://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001200.md b/md/UBERON/00/UBERON_0001200.md index 1645843856..06d10f0849 100644 --- a/md/UBERON/00/UBERON_0001200.md +++ b/md/UBERON/00/UBERON_0001200.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001200 * *Label* = submucosa of stomach - * *Definition* = A submucosa that is part of a stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * gastric submucosa * stomach submucosa - * submucosa of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * submucosa of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tela submucosa (gaster) - * ventriculus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucous layer of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002110] - * tela submucosa ventriculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002110] + * ventriculus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucous layer of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002110 ] + * tela submucosa ventriculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002110 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:14908 * MA:0002685 * SCTID:52459002 - * UMLS:C0227211 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Submucosa] + * UMLS:C0227211 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Submucosa ] * ncithesaurus:Gastric_Submucosa ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001300.md b/md/UBERON/00/UBERON_0001300.md index 79153e6d54..594b979eb3 100644 --- a/md/UBERON/00/UBERON_0001300.md +++ b/md/UBERON/00/UBERON_0001300.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001300 * *Label* = scrotum - * *Definition* = In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scrotum] + * *Definition* = In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scrotum ] ## Synonyms @@ -19,7 +19,7 @@ * MESH:A05.360.444.661 * OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA * SCTID:265794003 - * UMLS:C0036471 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scrotum] + * UMLS:C0036471 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scrotum ] * Wikipedia:Scrotum * galen:Scrotum * http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg @@ -48,8 +48,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = scrotal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001400.md b/md/UBERON/00/UBERON_0001400.md index 6c47e0acff..a2eadf9c52 100644 --- a/md/UBERON/00/UBERON_0001400.md +++ b/md/UBERON/00/UBERON_0001400.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001400 * *Label* = iliocostalis thoracis muscle - * *Definition* = The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis#Iliocostalis_thoracis] + * *Definition* = The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis#Iliocostalis_thoracis ] ## Synonyms - * iliocostalis thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] - * iliocostalis thoracis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] - * musculus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] + * iliocostalis thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] + * iliocostalis thoracis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] + * musculus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001500.md b/md/UBERON/00/UBERON_0001500.md index 4f463ae958..33fc9e7965 100644 --- a/md/UBERON/00/UBERON_0001500.md +++ b/md/UBERON/00/UBERON_0001500.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001500 * *Label* = muscle of manus - * *Definition* = A muscle organ that is part of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arm autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000628] + * arm autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000628 ] * manus muscle - * manus muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37372] - * muscle organ of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * manus muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37372 ] + * muscle organ of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -57,15 +57,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001600.md b/md/UBERON/00/UBERON_0001600.md index 9156318a55..50acff80e1 100644 --- a/md/UBERON/00/UBERON_0001600.md +++ b/md/UBERON/00/UBERON_0001600.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001600 * *Label* = tensor tympani - * *Definition* = the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_tympani_muscle] + * *Definition* = the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_tympani_muscle ] ## Synonyms * eustachian muscle - * tensor tympani muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_tympani_muscle] - * M. tensor tympani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_tympani_muscle] - * musculus tensor tympani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_tympani_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tympanic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_tympani_muscle] + * tensor tympani muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_tympani_muscle ] + * M. tensor tympani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_tympani_muscle ] + * musculus tensor tympani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_tympani_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tympanic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_tympani_muscle ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001221 * MESH:A02.633.567.975 * SCTID:244779001 - * UMLS:C0039529 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tensor_Tympani] + * UMLS:C0039529 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tensor_Tympani ] * VHOG:0000698 * Wikipedia:Tensor_tympani_muscle * http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005238 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001700.md b/md/UBERON/00/UBERON_0001700.md index 79b0f15f2d..821d76bf4b 100644 --- a/md/UBERON/00/UBERON_0001700.md +++ b/md/UBERON/00/UBERON_0001700.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001700 * *Label* = geniculate ganglion - * *Definition* = The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion] + * *Definition* = The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion ] * *Comment* = Editor notes: resolve facial VII vs geniculate (see EHDAA2) ## Synonyms - * facial VII ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001076] - * gVII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001291] - * ganglion genicularum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53414] - * genicular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53414] - * genicular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion] - * geniculate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion] - * facial ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001291] - * ganglion geniculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion] - * ganglion geniculi nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * geniculate ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001076] - * internal genu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniculate_ganglion] + * facial VII ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001076 ] + * gVII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001291 ] + * ganglion genicularum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53414 ] + * genicular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53414 ] + * genicular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion ] + * geniculate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion ] + * facial ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001291 ] + * ganglion geniculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion ] + * ganglion geniculi nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * geniculate ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001076 ] + * internal genu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniculate_ganglion ] ## Cross-references @@ -37,7 +37,7 @@ * NeuroNames:1535 * SCTID:279076005 * TAO:0001291 - * UMLS:C0017406 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Geniculate_Ganglion] + * UMLS:C0017406 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Geniculate_Ganglion ] * VHOG:0000707 * Wikipedia:Geniculate_ganglion * ZFA:0001291 @@ -71,8 +71,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001800.md b/md/UBERON/00/UBERON_0001800.md index 65fd85a82b..c33db3b2fe 100644 --- a/md/UBERON/00/UBERON_0001800.md +++ b/md/UBERON/00/UBERON_0001800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001800 * *Label* = sensory ganglion - * *Definition* = the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000960] + * *Definition* = the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000960 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:5885 * MA:0002566 * MESH:A08.340.390 - * UMLS:C0206429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sensory_Ganglion] + * UMLS:C0206429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sensory_Ganglion ] * ncithesaurus:Sensory_Ganglion ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0001900.md b/md/UBERON/00/UBERON_0001900.md index 03c02bc404..86f00e9956 100644 --- a/md/UBERON/00/UBERON_0001900.md +++ b/md/UBERON/00/UBERON_0001900.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001900 * *Label* = ventral thalamus - * *Definition* = Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021539] + * *Definition* = Anterior part of the diencephalon that lies between the dorsal thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021539 ] * *Comment* = Some sources treat the subthalamus as distinct from the thalamus, separated by the zona limitans intrathalamica. In MA, the ventral thalamus is part of the thalamus. Butler Hodos who identify a dorsal to ventral sequence consisting of epithalamus, dorsal thalamus, ventral thalamus and hypothalamus. We solve this by considering dorsal and ventral thalamus distinct, and the label thalamus as being ambiguous w.r.t thalamus proper (dorsal thalamus) or wider thalamus (dorsal plus ventral) ## Synonyms - * subthalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62010[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_708] - * subthalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_708[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamus] - * thalamus ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_708[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021539] - * ventral thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000181] - * SbTh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_708[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * perithalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamus] - * prethalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL] + * subthalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62010, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_708 ] + * subthalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_708, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamus ] + * thalamus ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_708, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021539 ] + * ventral thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000181 ] + * SbTh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_708, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * perithalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamus ] + * prethalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL ] ## Cross-references @@ -32,11 +32,11 @@ * MA:0000181 * MESH:A08.186.211.730.385.800 * NIF_GrossAnatomy:birnlex_708 - * NeuroNames:434 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_708] + * NeuroNames:434 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_708 ] * SCTID:279332007 * TAO:0000458 - * UMLS:C0152349 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_708] - * UMLS:C0152349 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventral_Thalamus] + * UMLS:C0152349 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_708 ] + * UMLS:C0152349 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventral_Thalamus ] * Wikipedia:Subthalamus * ZFA:0000458 * ncithesaurus:Ventral_Thalamus @@ -60,8 +60,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = subthalamic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002000.md b/md/UBERON/00/UBERON_0002000.md index fe22ee2a5c..2299ffd165 100644 --- a/md/UBERON/00/UBERON_0002000.md +++ b/md/UBERON/00/UBERON_0002000.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002000 * *Label* = gluteal muscle - * *Definition* = The gluteal muscles are the three muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteal_muscles] + * *Definition* = The gluteal muscles are the three muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteal_muscles ] * *Comment* = AO notes: FMA includes tensor fasciae latae and other buttock muscles. BTO def: Any one of three large skeletal muscles that form the buttock and move the thigh. ## Synonyms - * gluteus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000531] + * gluteus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000531 ] * gluteus muscle ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:18186 * FMA:64922 * MA:0000535 - * UMLS:C1744702 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gluteal_Muscle] + * UMLS:C1744702 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gluteal_Muscle ] * VHOG:0001316 * Wikipedia:Gluteal_muscles * ncithesaurus:Gluteal_Muscle @@ -44,8 +44,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gluteal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002100.md b/md/UBERON/00/UBERON_0002100.md index c463c530d0..420ffec6ef 100644 --- a/md/UBERON/00/UBERON_0002100.md +++ b/md/UBERON/00/UBERON_0002100.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002100 * *Label* = trunk - * *Definition* = Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001115[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Torso] + * *Definition* = Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001115, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Torso ] * *Comment* = editor note - check AAO ## Synonyms * thoracolumbar region * torso - * trunk region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000054] - * Rumpf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001493] + * trunk region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000054 ] + * Rumpf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001493 ] ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA * SCTID:262225004 * TAO:0001115 - * UMLS:C0460005 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trunk] + * UMLS:C0460005 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trunk ] * Wikipedia:Torso * XAO:0000054 * XAO:0003025 @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision that is the part of the body posterior to the head and anterior to the tail.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision which is the part of the body posterior to the head and anterior to the tail.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002200.md b/md/UBERON/00/UBERON_0002200.md index ab795a274f..dd422c7741 100644 --- a/md/UBERON/00/UBERON_0002200.md +++ b/md/UBERON/00/UBERON_0002200.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002200 * *Label* = vasculature of head - * *Definition* = Vasculature that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Vasculature that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * adult head vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult head vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult head vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult head vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * cranial vasculature - * head vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular network of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular network of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasculature of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * head vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular network of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular network of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasculature of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * head vasculature ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002300.md b/md/UBERON/00/UBERON_0002300.md index a04537e071..ab6f025b2b 100644 --- a/md/UBERON/00/UBERON_0002300.md +++ b/md/UBERON/00/UBERON_0002300.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002300 * *Label* = obsolete ventricle - * *Definition* = A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricle_of_the_larynx] + * *Definition* = A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricle_of_the_larynx ] ## Synonyms @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:82553 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002300 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_0002400.md b/md/UBERON/00/UBERON_0002400.md index 6250c22d88..094193e902 100644 --- a/md/UBERON/00/UBERON_0002400.md +++ b/md/UBERON/00/UBERON_0002400.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002400 * *Label* = parietal pleura - * *Definition* = Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_pleura] + * *Definition* = Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_pleura ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * pleura parietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_pleura[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pleura parietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_pleura, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002488 * OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA * SCTID:361998003 - * UMLS:C0225777 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parietal_Pleura] + * UMLS:C0225777 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parietal_Pleura ] * VHOG:0001495 * Wikipedia:Parietal_pleura * http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002500.md b/md/UBERON/00/UBERON_0002500.md index 69b8c4276c..0322509c70 100644 --- a/md/UBERON/00/UBERON_0002500.md +++ b/md/UBERON/00/UBERON_0002500.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002500 * *Label* = zygomatic arch - * *Definition* = The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_arch] + * *Definition* = The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_arch ] ## Synonyms * zygoma - * arcus zygomaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arcus zygomaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MESH:A02.835.232.781.324.995 * OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA * SCTID:272682006 - * UMLS:C0162485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zygomatic_Arch] + * UMLS:C0162485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zygomatic_Arch ] * Wikipedia:Zygomatic_arch * galen:Zygoma * http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray188-Sphenozygomatic_suture.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002600.md b/md/UBERON/00/UBERON_0002600.md index 2c355a70b7..453a571a74 100644 --- a/md/UBERON/00/UBERON_0002600.md +++ b/md/UBERON/00/UBERON_0002600.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002600 * *Label* = limbic lobe - * *Definition* = The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limbic_lobe] + * *Definition* = The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limbic_lobe ] ## Synonyms - * fornicate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72719] + * fornicate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72719 ] * grande lobe limbique of broca * limbic lobe (carpenter) - * fornicate convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:834] - * fornicate lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:834] - * gyrus fornicatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:834[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral lemniscus (complex) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LL] - * lobus limbicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limbic_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fornicate convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:834 ] + * fornicate lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:834 ] + * gyrus fornicatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:834, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral lemniscus (complex) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LL ] + * lobus limbicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limbic_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,9 +23,9 @@ * CALOHA:TS-2061 * FMA:72719 * NIF_GrossAnatomy:birnlex_1128 - * NeuroNames:834 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1128] + * NeuroNames:834 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1128 ] * SCTID:279215006 - * UMLS:C0458337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1128] + * UMLS:C0458337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1128 ] * Wikipedia:Limbic_lobe * http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002700.md b/md/UBERON/00/UBERON_0002700.md index 555f48b841..6307b50b2b 100644 --- a/md/UBERON/00/UBERON_0002700.md +++ b/md/UBERON/00/UBERON_0002700.md @@ -6,17 +6,17 @@ ## Synonyms - * subcuneiform area of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72428] - * SubCn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1441[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus subcuneiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:503[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * subcuneiform area of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72428 ] + * SubCn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1441, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus subcuneiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:503, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:SubCn * FMA:72428 * NIF_GrossAnatomy:birnlex_1441 - * NeuroNames:503 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1441] - * UMLS:C0175397 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1441] + * NeuroNames:503 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1441 ] + * UMLS:C0175397 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1441 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002800.md b/md/UBERON/00/UBERON_0002800.md index f23430645a..70df089ba3 100644 --- a/md/UBERON/00/UBERON_0002800.md +++ b/md/UBERON/00/UBERON_0002800.md @@ -6,17 +6,17 @@ ## Synonyms - * spinal trigeminal tract of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:614] - * tractus spinalis nervi trigemini (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:614[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spinal trigeminal tract of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:614 ] + * tractus spinalis nervi trigemini (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:614, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:sp5p * FMA:72507 * NIF_GrossAnatomy:birnlex_1725 - * NeuroNames:614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1725] + * NeuroNames:614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1725 ] * SCTID:369027002 - * UMLS:C0228456 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1725] + * UMLS:C0228456 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1725 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0002900.md b/md/UBERON/00/UBERON_0002900.md index 6c1591e45c..b06777eff3 100644 --- a/md/UBERON/00/UBERON_0002900.md +++ b/md/UBERON/00/UBERON_0002900.md @@ -6,8 +6,8 @@ ## Synonyms - * sulcus occipitalis transversus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4013] - * tocs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4013[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus occipitalis transversus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4013 ] + * tocs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4013, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -15,8 +15,8 @@ * BTO:0003786 * FMA:83786 * NIF_GrossAnatomy:birnlex_4013 - * NeuroNames:145 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4013] - * UMLS:C0262348 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4013] + * NeuroNames:145 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4013 ] + * UMLS:C0262348 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4013 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0003000.md b/md/UBERON/00/UBERON_0003000.md index 04d6d2f643..8c720904e3 100644 --- a/md/UBERON/00/UBERON_0003000.md +++ b/md/UBERON/00/UBERON_0003000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003000 * *Label* = intermediate filament - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_filament] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_filament ] ## Synonyms @@ -35,9 +35,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = NIF_Subcellular:sao952483289 * *[consider](../../er/oboInOwl#consider.md)* = UMLS:C0021770 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Intermediate_Filament - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003000 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_0003100.md b/md/UBERON/00/UBERON_0003100.md index d3be2849ba..9a2e5ef924 100644 --- a/md/UBERON/00/UBERON_0003100.md +++ b/md/UBERON/00/UBERON_0003100.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003100 * *Label* = female organism - * *Definition* = Gonochoristic organism that can produce female gametes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000028] + * *Definition* = Gonochoristic organism that can produce female gametes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000028 ] ## Synonyms - * female human body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67812[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000303] + * female human body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67812, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000303 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0003200.md b/md/UBERON/00/UBERON_0003200.md index 14f4286658..d55eb54ec9 100644 --- a/md/UBERON/00/UBERON_0003200.md +++ b/md/UBERON/00/UBERON_0003200.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004920 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000706 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003200 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_0003300.md b/md/UBERON/00/UBERON_0003300.md index 0bc0e284e7..e8bd5fb5b4 100644 --- a/md/UBERON/00/UBERON_0003300.md +++ b/md/UBERON/00/UBERON_0003300.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003300 * *Label* = roof plate of telencephalon - * *Definition* = A roof plate that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000774] - * roofplate of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * telencephalon roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * telencephalon roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate medulla telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000774] + * roof plate telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000774 ] + * roofplate of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * telencephalon roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * telencephalon roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate medulla telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000774 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the telencephalon. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0003500.md b/md/UBERON/00/UBERON_0003500.md index 749c75815d..76be097f90 100644 --- a/md/UBERON/00/UBERON_0003500.md +++ b/md/UBERON/00/UBERON_0003500.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003500 * *Label* = corneal blood vessel - * *Definition* = A blood vessel that is part of a cornea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764] + * *Definition* = A blood vessel that is part of a cornea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3564332&group_id=36855&atid=440764 ] * *Comment* = Editor notes: follow up on tracker item ## Synonyms - * blood vessel of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cornea blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cornea blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cornea](../../UBERON/64/UBERON_0000964.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9775 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0003700.md b/md/UBERON/00/UBERON_0003700.md index c00079944e..2dbb06c2f1 100644 --- a/md/UBERON/00/UBERON_0003700.md +++ b/md/UBERON/00/UBERON_0003700.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003700 * *Label* = temporomandibular joint - * *Definition* = A joint of the jaw that connects the mandible to a temporal bone. There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] + * *Definition* = A joint of the jaw that connects the mandible to a temporal bone. There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] ## Synonyms - * TMJ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003674[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] - * temperomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0010754] - * articulatio temporomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dentary-squamosal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryT.html] - * squamosal-dentary joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryT.html] - * tempero-mandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] - * temporalmandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] - * temporomandibular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] - * temporomandibular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] - * temporomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint] + * TMJ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003674, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] + * temperomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0010754 ] + * articulatio temporomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dentary-squamosal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryT.html ] + * squamosal-dentary joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryT.html ] + * tempero-mandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] + * temporalmandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] + * temporomandibular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] + * temporomandibular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] + * temporomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0002899 * MESH:A02.835.583.861 * SCTID:181814009 - * UMLS:C0039493 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Jaw_Joint] + * UMLS:C0039493 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Jaw_Joint ] * Wikipedia:Temporomandibular_joint * http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray309.png * ncithesaurus:Jaw_Joint @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [dentary](../../UBERON/42/UBERON_0004742.md) and [connects](../../ts/core#connects.md) some [squamous part of temporal bone](../../UBERON/95/UBERON_0001695.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0003900.md b/md/UBERON/00/UBERON_0003900.md index 7c0465a1d5..6a8ab1b361 100644 --- a/md/UBERON/00/UBERON_0003900.md +++ b/md/UBERON/00/UBERON_0003900.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003900 * *Label* = epaxial myotome region - * *Definition* = Portion of myotome that is dorsal to the horizontal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Portion of myotome that is dorsal to the horizontal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * epaxial myotome regions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001084[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * epaxial myotome regions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001084, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004000.md b/md/UBERON/00/UBERON_0004000.md index b63f9559f7..91d22db77e 100644 --- a/md/UBERON/00/UBERON_0004000.md +++ b/md/UBERON/00/UBERON_0004000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004000 * *Label* = tarsal gland acinus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009935] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009935 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal gland](../../UBERON/18/UBERON_0001818.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004100.md b/md/UBERON/00/UBERON_0004100.md index e32314fc4a..05eb7b7356 100644 --- a/md/UBERON/00/UBERON_0004100.md +++ b/md/UBERON/00/UBERON_0004100.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004100 * *Label* = renal collecting system - * *Definition* = The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0004742[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collecting_duct_system] + * *Definition* = The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0004742, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collecting_duct_system ] ## Synonyms - * collecting duct system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collecting_duct_system] - * kidney collecting duct system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collecting_duct_system] - * tubulus renalis colligens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collecting_duct_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * collecting duct system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collecting_duct_system ] + * kidney collecting duct system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collecting_duct_system ] + * tubulus renalis colligens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collecting_duct_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004200.md b/md/UBERON/00/UBERON_0004200.md index 86df1e217f..0194f1d21d 100644 --- a/md/UBERON/00/UBERON_0004200.md +++ b/md/UBERON/00/UBERON_0004200.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004200 * *Label* = kidney pyramid - * *Definition* = Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts[GO]. One of a number of pyramidal masses seen on longitudinal section of the kidney; collectively, they constitute the renal medulla, and contain part of the secreting tubules and the collecting tubules[BTO]. Renal pyramids (or malpighian pyramids) are cone-shaped tissues of the kidney. The renal medulla is made up of 8 to 18 of these conical subdivisions. The broad base of each pyramid faces the renal cortex, and its apex, or papilla, points internally. The pyramids appear striped because they are formed by straight parallel segments of nephrons. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003926[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072056[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pyramids] + * *Definition* = Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts[GO]. One of a number of pyramidal masses seen on longitudinal section of the kidney; collectively, they constitute the renal medulla, and contain part of the secreting tubules and the collecting tubules[BTO]. Renal pyramids (or malpighian pyramids) are cone-shaped tissues of the kidney. The renal medulla is made up of 8 to 18 of these conical subdivisions. The broad base of each pyramid faces the renal cortex, and its apex, or papilla, points internally. The pyramids appear striped because they are formed by straight parallel segments of nephrons. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003926, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072056, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pyramids ] * *Comment* = not the same as FMA:50609 Pyramid (which is a volume / dimensional entity) ## Synonyms - * malpighian pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pyramids] - * renal pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pyramids] - * pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072056] - * malphigian pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003926] + * malpighian pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pyramids ] + * renal pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pyramids ] + * pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072056 ] + * malphigian pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003926 ] * medullary pyramid - * pyramid of Malphigi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pyramid_of_Malpighi] - * pyramides renales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pyramids[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyramis renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003926] + * pyramid of Malphigi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pyramid_of_Malpighi ] + * pyramides renales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pyramids, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyramis renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003926 ] ## Cross-references @@ -23,8 +23,8 @@ * FMA:258870 * MA:0001654 * SCTID:361328001 - * UMLS:C0227629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Pyramid] - * UMLS:C1514613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pyramid_of_Malpighi] + * UMLS:C0227629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Pyramid ] + * UMLS:C1514613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pyramid_of_Malpighi ] * Wikipedia:Renal_pyramids * http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png @@ -51,8 +51,9 @@ * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_74268 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002449 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005098 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004300.md b/md/UBERON/00/UBERON_0004300.md index dbb1f16ae3..34ae29f63f 100644 --- a/md/UBERON/00/UBERON_0004300.md +++ b/md/UBERON/00/UBERON_0004300.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004300 * *Label* = distal phalanx - * *Definition* = Terminal phalanx located at the tip of the digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_phalanges] + * *Definition* = Terminal phalanx located at the tip of the digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_phalanges ] * *Comment* = Taxon notes: In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans. ## Synonyms - * phalanx distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_phalanges] - * terminal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010676] - * ungual phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=67679] - * phalanx distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_phalanges[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * phalanx distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_phalanges ] + * terminal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010676 ] + * ungual phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=67679 ] + * phalanx distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_phalanges, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [phalanx](../../UBERON/21/UBERON_0003221.md) and [proximally connected to](../../core#proximally/to/core#proximally_connected_to.md) some [middle phalanx](../../UBERON/01/UBERON_0004301.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004400.md b/md/UBERON/00/UBERON_0004400.md index 953917d33d..0de039139e 100644 --- a/md/UBERON/00/UBERON_0004400.md +++ b/md/UBERON/00/UBERON_0004400.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004400 * *Label* = bone tissue of epiphysis - * *Definition* = A portion of bone tissue that is part of a epiphysis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of bone tissue that is part of a epiphysis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epiphysis](../../UBERON/37/UBERON_0001437.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004500.md b/md/UBERON/00/UBERON_0004500.md index 2e8133a8f2..eec96bb4e6 100644 --- a/md/UBERON/00/UBERON_0004500.md +++ b/md/UBERON/00/UBERON_0004500.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004500 * *Label* = skeletal muscle tissue of deltoid - * *Definition* = A portion of skeletal muscle tissue that is part of a deltoid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a deltoid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [deltoid](../../UBERON/76/UBERON_0001476.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004700.md b/md/UBERON/00/UBERON_0004700.md index 9d31711916..062177d5ec 100644 --- a/md/UBERON/00/UBERON_0004700.md +++ b/md/UBERON/00/UBERON_0004700.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004700 * *Label* = arterial system endothelium - * *Definition* = An endothelium that is part of an arterial system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of an arterial system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0000703 - * UMLS:C1706849 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arterial_System_Endothelium] + * UMLS:C1706849 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arterial_System_Endothelium ] * ncithesaurus:Arterial_System_Endothelium ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arterial system](../../UBERON/72/UBERON_0004572.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004800.md b/md/UBERON/00/UBERON_0004800.md index 7ba516bf22..257606e168 100644 --- a/md/UBERON/00/UBERON_0004800.md +++ b/md/UBERON/00/UBERON_0004800.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004800 * *Label* = bronchus basal lamina - * *Definition* = A basal lamina that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basal lamina that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal lamina of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of connective tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of connective tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of connective tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi basal lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk basal lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * basal lamina of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of connective tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of connective tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of connective tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi basal lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk basal lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001833 - * UMLS:C1707050 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Basal_Lamina] + * UMLS:C1707050 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Basal_Lamina ] * ncithesaurus:Bronchus_Basal_Lamina ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basal lamina of epithelium](../../UBERON/82/UBERON_0000482.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0004900.md b/md/UBERON/00/UBERON_0004900.md index 871c2138bf..c911513d9b 100644 --- a/md/UBERON/00/UBERON_0004900.md +++ b/md/UBERON/00/UBERON_0004900.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004900 * *Label* = right lung middle lobe lobar bronchus mesenchyme - * *Definition* = The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012672] + * *Definition* = The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012672 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus of right lung](../../UBERON/04/UBERON_0003404.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle lobe of right lung](../../UBERON/74/UBERON_0002174.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005000.md b/md/UBERON/00/UBERON_0005000.md index 4aa79004fa..51de79883b 100644 --- a/md/UBERON/00/UBERON_0005000.md +++ b/md/UBERON/00/UBERON_0005000.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005000 * *Label* = mucosa of common bile duct - * *Definition* = A mucosa that is part of a common bile duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a common bile duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * common bile duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common bile duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common bile duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common bile duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common bile ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14688] - * ductus choledochus (biliaris) mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus choledochus (biliaris) mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus choledochus (biliaris) mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus choledochus (biliaris) organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of ductus choledochus (biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of common bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ductus choledochus (biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of common bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ductus choledochus (biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of common bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ductus choledochus (biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * common bile duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common bile duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common bile duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common bile duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common bile ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14688 ] + * ductus choledochus (biliaris) mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus choledochus (biliaris) mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus choledochus (biliaris) mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus choledochus (biliaris) organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of ductus choledochus (biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of common bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ductus choledochus (biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of common bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ductus choledochus (biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of common bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ductus choledochus (biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [common bile duct](../../UBERON/74/UBERON_0001174.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005100.md b/md/UBERON/00/UBERON_0005100.md index 45d52a3289..116277691a 100644 --- a/md/UBERON/00/UBERON_0005100.md +++ b/md/UBERON/00/UBERON_0005100.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005100 * *Label* = long descending thin limb - * *Definition* = The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072064] + * *Definition* = The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072064 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005200.md b/md/UBERON/00/UBERON_0005200.md index 98c5b081bc..998eebeaea 100644 --- a/md/UBERON/00/UBERON_0005200.md +++ b/md/UBERON/00/UBERON_0005200.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005200 * *Label* = thoracic mammary gland - * *Definition* = A lactiferous gland that is located in the thoracic region/breast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammary_gland#Other_mammals[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A lactiferous gland that is located in the thoracic region/breast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammary_gland#Other_mammals, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Most primates have one pair of mammary glands, which are thoracic. ## Synonyms * breast mammary gland - * lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62088[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62088[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * anterior mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammary_gland#Other_mammals] + * lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62088, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62088, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * anterior mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammary_gland#Other_mammals ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mammary gland](../../UBERON/11/UBERON_0001911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_57983 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005300.md b/md/UBERON/00/UBERON_0005300.md index a2c17492ea..84ba0729e7 100644 --- a/md/UBERON/00/UBERON_0005300.md +++ b/md/UBERON/00/UBERON_0005300.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003937 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005300 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_0005400.md b/md/UBERON/00/UBERON_0005400.md index 164f800683..816787a307 100644 --- a/md/UBERON/00/UBERON_0005400.md +++ b/md/UBERON/00/UBERON_0005400.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005400 * *Label* = telencephalon arachnoid mater - * *Definition* = An arachnoid mater that is part of a telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * telencephalon arachnoid matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000980] + * telencephalon arachnoid matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000980 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005500.md b/md/UBERON/00/UBERON_0005500.md index 56d7acd984..c43e420995 100644 --- a/md/UBERON/00/UBERON_0005500.md +++ b/md/UBERON/00/UBERON_0005500.md @@ -6,11 +6,11 @@ ## Synonyms - * floor plate hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001019] - * floor plate rhombomere region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001258] - * rhombencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004324] - * floor plate rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001019] - * floorplate hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001019] + * floor plate hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001019 ] + * floor plate rhombomere region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001258 ] + * rhombencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004324 ] + * floor plate rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001019 ] + * floorplate hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001019 ] ## Cross-references @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005600.md b/md/UBERON/00/UBERON_0005600.md index d0e88ce61b..0cbfdf1807 100644 --- a/md/UBERON/00/UBERON_0005600.md +++ b/md/UBERON/00/UBERON_0005600.md @@ -6,7 +6,7 @@ ## Synonyms - * crus commune [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001210] + * crus commune [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001210 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005700.md b/md/UBERON/00/UBERON_0005700.md index 108cb59a82..86bdb7f6a5 100644 --- a/md/UBERON/00/UBERON_0005700.md +++ b/md/UBERON/00/UBERON_0005700.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005700 * *Label* = upper jaw molar odontogenic papilla - * *Definition* = An odontogenic papilla that is part of a upper jaw molar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a upper jaw molar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * upper jaw molar dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002127] + * upper jaw molar dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002127 ] * upper molar mesenchyme ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw molar](../../UBERON/66/UBERON_0003666.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0005800.md b/md/UBERON/00/UBERON_0005800.md index 95fb615e29..994c4049ac 100644 --- a/md/UBERON/00/UBERON_0005800.md +++ b/md/UBERON/00/UBERON_0005800.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005800 * *Label* = segment of aorta - * *Definition* = Any portion of the aorta including the ascending and descending aorta, and aortic arch or a portion of the aortic orifice of the left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Aortic_Segment] + * *Definition* = Any portion of the aorta including the ascending and descending aorta, and aortic arch or a portion of the aortic orifice of the left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Aortic_Segment ] ## Synonyms - * aortic segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13087] + * aortic segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13087 ] ## Cross-references * FMA:13087 * SCTID:119203005 - * UMLS:C0506947 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aortic_Segment] + * UMLS:C0506947 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aortic_Segment ] * ncithesaurus:Aortic_Segment ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0006100.md b/md/UBERON/00/UBERON_0006100.md index 085c3a95e2..c1fb655c0a 100644 --- a/md/UBERON/00/UBERON_0006100.md +++ b/md/UBERON/00/UBERON_0006100.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006100 * *Label* = Brodmann (1909) area 3 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] ## Synonyms - * B09-3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * BA3 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * Brodmann area 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * Brodmann's area 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68599] - * area 3 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68599] - * area 3 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * area postcentralis oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * rostral postcentral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1734] - * rostral postcentral area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68599] - * B09-3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1734[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 3 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1006] + * B09-3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * BA3 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * Brodmann area 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * Brodmann's area 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68599 ] + * area 3 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68599 ] + * area 3 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * area postcentralis oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * rostral postcentral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1734 ] + * rostral postcentral area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68599 ] + * B09-3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1734, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 3 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1006 ] ## Cross-references * FMA:68599 * NIF_GrossAnatomy:birnlex_1734 - * NeuroNames:1006 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1734] - * UMLS:C1272525 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1734] + * NeuroNames:1006 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1734 ] + * UMLS:C1272525 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1734 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0006200.md b/md/UBERON/00/UBERON_0006200.md index 2ab619ba64..d7e949c32c 100644 --- a/md/UBERON/00/UBERON_0006200.md +++ b/md/UBERON/00/UBERON_0006200.md @@ -7,9 +7,9 @@ ## Synonyms - * posterior circumflex humeral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71216] - * posterior humeral circumflex vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71216] - * vena circumflexa humeri posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71216[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior circumflex humeral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71216 ] + * posterior humeral circumflex vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71216 ] + * vena circumflexa humeri posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71216, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0006300.md b/md/UBERON/00/UBERON_0006300.md index 1bde04141c..3977f61a84 100644 --- a/md/UBERON/00/UBERON_0006300.md +++ b/md/UBERON/00/UBERON_0006300.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006300 * *Label* = supracardinal vein - * *Definition* = Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0443065837[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/supracardinal%20vein] + * *Definition* = Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0443065837, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/supracardinal%20vein ] ## Synonyms @@ -14,7 +14,7 @@ * EHDAA:7492 * EMAPA:16830 * SCTID:308829001 - * UMLS:C0231090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Supracardinal_Vein] + * UMLS:C0231090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Supracardinal_Vein ] * ncithesaurus:Supracardinal_Vein ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0006600.md b/md/UBERON/00/UBERON_0006600.md index fb54127652..4e6f749a8e 100644 --- a/md/UBERON/00/UBERON_0006600.md +++ b/md/UBERON/00/UBERON_0006600.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0006800.md b/md/UBERON/00/UBERON_0006800.md index bc739caf89..5181342925 100644 --- a/md/UBERON/00/UBERON_0006800.md +++ b/md/UBERON/00/UBERON_0006800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006800 * *Label* = anatomical line - * *Definition* = Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Non-material anatomical entity of one dimension, whiVSAO forms a boundary of an anatomical surface or is a modulation of an anatomical surface.[CARO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0007100.md b/md/UBERON/00/UBERON_0007100.md index a3f82c4f72..1151c6de14 100644 --- a/md/UBERON/00/UBERON_0007100.md +++ b/md/UBERON/00/UBERON_0007100.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007100 * *Label* = circulatory organ - * *Definition* = A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007507] + * *Definition* = A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007507 ] * *Comment* = editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata ## Synonyms * cardiac pump * heart or heart like organ - * dorsal tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Heart] - * heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007507] - * adult heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00003154] + * dorsal tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Heart ] + * heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007507 ] + * adult heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00003154 ] * cardiac structure ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7718 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0007300.md b/md/UBERON/00/UBERON_0007300.md index eed44f48d6..4bba7cab5b 100644 --- a/md/UBERON/00/UBERON_0007300.md +++ b/md/UBERON/00/UBERON_0007300.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007300 * *Label* = pectoral appendage blood vessel - * *Definition* = A blood vessel that is part of a pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pectoral fin blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005301[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pectoral fin blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005301, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0007500.md b/md/UBERON/00/UBERON_0007500.md index c59b6dba8a..ef784d5e46 100644 --- a/md/UBERON/00/UBERON_0007500.md +++ b/md/UBERON/00/UBERON_0007500.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007500 * *Label* = epithelial tube open at both ends - * *Definition* = An epithelial tube open at both ends that allows fluid flow. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000001] + * *Definition* = An epithelial tube open at both ends that allows fluid flow. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000001 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0007800.md b/md/UBERON/00/UBERON_0007800.md index 7443296932..1091901f9c 100644 --- a/md/UBERON/00/UBERON_0007800.md +++ b/md/UBERON/00/UBERON_0007800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007800 * *Label* = proatlas - * *Definition* = a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://encyclopedia2.thefreedictionary.com/Proatlas] + * *Definition* = a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://encyclopedia2.thefreedictionary.com/Proatlas ] * *Comment* = Variation notes: sometimes seen in humans as an anomaly. ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0008000.md b/md/UBERON/00/UBERON_0008000.md index 606fa9e656..7f97a136a3 100644 --- a/md/UBERON/00/UBERON_0008000.md +++ b/md/UBERON/00/UBERON_0008000.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008000 * *Label* = sesamoid bone of pes - * *Definition* = A sesamoid bone that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sesamoid bone that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sesamoid bone of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45096] + * sesamoid bone of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45096 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [sesamoid bone](../../UBERON/79/UBERON_0001479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0008200.md b/md/UBERON/00/UBERON_0008200.md index 2345f4781c..e45edf9951 100644 --- a/md/UBERON/00/UBERON_0008200.md +++ b/md/UBERON/00/UBERON_0008200.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008200 * *Label* = forehead - * *Definition* = The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.456.505.580[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forehead] + * *Definition* = The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.456.505.580, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forehead ] ## Synonyms - * fore head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forehead] - * sinciput [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forehead[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fore head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forehead ] + * sinciput [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forehead, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * GAID:74 * MESH:A01.456.505.580 * SCTID:362614004 - * UMLS:C0016540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Forehead] + * UMLS:C0016540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Forehead ] * Wikipedia:Forehead * galen:Forehead * http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0008800.md b/md/UBERON/00/UBERON_0008800.md index 5a20136044..4d898987f2 100644 --- a/md/UBERON/00/UBERON_0008800.md +++ b/md/UBERON/00/UBERON_0008800.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008800 * *Label* = parietal endoderm - * *Definition* = primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011187[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19201946] + * *Definition* = primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011187, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19201946 ] ## Synonyms - * distal endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16053] + * distal endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16053 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0009000.md b/md/UBERON/00/UBERON_0009000.md index 34e9df5a83..c0100f75eb 100644 --- a/md/UBERON/00/UBERON_0009000.md +++ b/md/UBERON/00/UBERON_0009000.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009000 * *Label* = ischial spine - * *Definition* = A bony process projecting backward and medialward from the posterior border of the ischium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004149] + * *Definition* = A bony process projecting backward and medialward from the posterior border of the ischium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004149 ] * *Comment* = AO notes: BTO places this in the vertebral column ## Synonyms - * spina ischialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17028] - * spine of ischium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischial_spine] - * spine of the ischium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischial_spine] - * the ischial spines [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischial_spine] + * spina ischialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17028 ] + * spine of ischium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischial_spine ] + * spine of the ischium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischial_spine ] + * the ischial spines [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischial_spine ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone spine](../../UBERON/06/UBERON_0013706.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ischium](../../UBERON/74/UBERON_0001274.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = From the posterior border of the body of the Ischium there extends backward a thin and pointed triangular eminence, the ischial spine, more or less elongated in different subjects. It can serve as a landmark in pudendal anesthesia[Wikipedia:Ischial_spine]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0009100.md b/md/UBERON/00/UBERON_0009100.md index 282f0c4588..431230b4d1 100644 --- a/md/UBERON/00/UBERON_0009100.md +++ b/md/UBERON/00/UBERON_0009100.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009100 * *Label* = nephric fold - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/ ] * *Comment* = Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0009200.md b/md/UBERON/00/UBERON_0009200.md index 532f7add41..ed732fdc70 100644 --- a/md/UBERON/00/UBERON_0009200.md +++ b/md/UBERON/00/UBERON_0009200.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009200 * *Label* = limb epidermis - * *Definition* = The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dph[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:sdb_2009[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tb] + * *Definition* = The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dph, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:sdb_2009, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tb ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epidermis](../../UBERON/03/UBERON_0001003.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0009500.md b/md/UBERON/00/UBERON_0009500.md index 3f34911be0..ac052f4b8b 100644 --- a/md/UBERON/00/UBERON_0009500.md +++ b/md/UBERON/00/UBERON_0009500.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009500 * *Label* = associated mesenchyme of otocyst - * *Definition* = Mesenchyme that is part of a ear vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a ear vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ear vesicle](../../UBERON/51/UBERON_0003051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0009600.md b/md/UBERON/00/UBERON_0009600.md index 9788994c73..9206484e08 100644 --- a/md/UBERON/00/UBERON_0009600.md +++ b/md/UBERON/00/UBERON_0009600.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009600 * *Label* = mesenchyme of interdigital region of manus - * *Definition* = An interdigital region mesenchyme that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0010000.md b/md/UBERON/00/UBERON_0010000.md index ad254defa2..4190e2854c 100644 --- a/md/UBERON/00/UBERON_0010000.md +++ b/md/UBERON/00/UBERON_0010000.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010000 * *Label* = multicellular anatomical structure - * *Definition* = An anatomical structure that has more than one cell as a part. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0010000] + * *Definition* = An anatomical structure that has more than one cell as a part. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0010000 ] ## Synonyms - * multicellular structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00100313] + * multicellular structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00100313 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0010300.md b/md/UBERON/00/UBERON_0010300.md index 4b59c9cc1a..26b1e30b6f 100644 --- a/md/UBERON/00/UBERON_0010300.md +++ b/md/UBERON/00/UBERON_0010300.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0010400.md b/md/UBERON/00/UBERON_0010400.md index 035b8f998d..08230ec7b7 100644 --- a/md/UBERON/00/UBERON_0010400.md +++ b/md/UBERON/00/UBERON_0010400.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010400 * *Label* = spleen trabecular vein - * *Definition* = one of the veins that feed the splenic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002228[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_veins] + * *Definition* = one of the veins that feed the splenic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002228, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_veins ] ## Synonyms - * trabecular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_veins] + * trabecular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_veins ] ## Cross-references * MA:0000760 - * UMLS:C1710160 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Trabecular_Vein] + * UMLS:C1710160 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Trabecular_Vein ] * Wikipedia:Trabecular_veins * ncithesaurus:Splenic_Trabecular_Vein @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trabecula of spleen](../../UBERON/65/UBERON_0001265.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The trabecular veins are the largest veins inside the spleen. It drains the blood collected in the sinuses of the pulp.[Wikipedia] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0010700.md b/md/UBERON/00/UBERON_0010700.md index 26eea9809e..6b63f67eb5 100644 --- a/md/UBERON/00/UBERON_0010700.md +++ b/md/UBERON/00/UBERON_0010700.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010700 * *Label* = phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit mesenchyme](../../UBERON/02/UBERON_0010702.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0010900.md b/md/UBERON/00/UBERON_0010900.md index c8bc794967..cd2174bbf3 100644 --- a/md/UBERON/00/UBERON_0010900.md +++ b/md/UBERON/00/UBERON_0010900.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010900 * *Label* = tarsometatarsus cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [tarsometatarsus endochondral element](../../UBERON/12/UBERON_0015012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0011200.md b/md/UBERON/00/UBERON_0011200.md index 10a6d59d76..e952a123cc 100644 --- a/md/UBERON/00/UBERON_0011200.md +++ b/md/UBERON/00/UBERON_0011200.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011200 * *Label* = sacrococcygeal symphysis - * *Definition* = The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacrococcygeal_symphysis] + * *Definition* = The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacrococcygeal_symphysis ] ## Synonyms - * sacrococcygeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16210] - * sacrococcygeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacrococcygeal_symphysis] + * sacrococcygeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16210 ] + * sacrococcygeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacrococcygeal_symphysis ] ## Cross-references * FMA:16210 - * UMLS:C0224593 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacrococcygeal_Joint] + * UMLS:C0224593 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacrococcygeal_Joint ] * Wikipedia:Sacrococcygeal_symphysis * http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray320.png * ncithesaurus:Sacrococcygeal_Joint @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [coccyx](../../UBERON/50/UBERON_0001350.md) and [connects](../../ts/core#connects.md) some [sacrum](../../UBERON/90/UBERON_0003690.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0011300.md b/md/UBERON/00/UBERON_0011300.md index b829d172ff..4659ad74f4 100644 --- a/md/UBERON/00/UBERON_0011300.md +++ b/md/UBERON/00/UBERON_0011300.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011300 * *Label* = gray matter of telencephalon - * *Definition* = A portion of gray matter of neuraxis that is part of a telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of gray matter of neuraxis that is part of a telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0011800.md b/md/UBERON/00/UBERON_0011800.md index f45a4bbc5c..abcdead4b4 100644 --- a/md/UBERON/00/UBERON_0011800.md +++ b/md/UBERON/00/UBERON_0011800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011800 * *Label* = dermal pulp of feather shaft - * *Definition* = A tissue that is part of a cavity of feather shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tissue that is part of a cavity of feather shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [feather shaft](../../UBERON/84/UBERON_0011784.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0011900.md b/md/UBERON/00/UBERON_0011900.md index 45ec8fcc2e..1236e8ad0f 100644 --- a/md/UBERON/00/UBERON_0011900.md +++ b/md/UBERON/00/UBERON_0011900.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011900 * *Label* = perimysium - * *Definition* = The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perimysium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/perimysium] + * *Definition* = The fibrous sheath enveloping each of the primary bundles of skeletal muscle fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perimysium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/perimysium ] ## Synonyms - * fascia of muscle fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9728] + * fascia of muscle fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9728 ] ## Cross-references * FMA:9728 * SCTID:63406008 - * UMLS:C0224087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perimysium] + * UMLS:C0224087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perimysium ] * Wikipedia:Perimysium * ncithesaurus:Perimysium @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011900 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0012100.md b/md/UBERON/00/UBERON_0012100.md index 9dcca8297e..d45db9fd3b 100644 --- a/md/UBERON/00/UBERON_0012100.md +++ b/md/UBERON/00/UBERON_0012100.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012100 * *Label* = appendicocostalis muscle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15755883] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15755883 ] ## Synonyms - * appendicocostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15755883] + * appendicocostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15755883 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0012200.md b/md/UBERON/00/UBERON_0012200.md index dfa95c4984..3c67057b10 100644 --- a/md/UBERON/00/UBERON_0012200.md +++ b/md/UBERON/00/UBERON_0012200.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012200 * *Label* = anterior intercostal vein - * *Definition* = The anterior intercostal veins are the veins which drain the anterior intercostal space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_intercostal_veins] + * *Definition* = The anterior intercostal veins are the veins which drain the anterior intercostal space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_intercostal_veins ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012200 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0012300.md b/md/UBERON/00/UBERON_0012300.md index 3cfa4dbb11..3019e8eaef 100644 --- a/md/UBERON/00/UBERON_0012300.md +++ b/md/UBERON/00/UBERON_0012300.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012300 * *Label* = limb paddle - * *Definition* = A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011685] + * *Definition* = A transient developing limb structure that develops from the limb bud; it is a dorsoventral flattening of the limb bud structure and develops into the foot plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011685 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012300 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0013500.md b/md/UBERON/00/UBERON_0013500.md index 840458eade..d38ee79a4e 100644 --- a/md/UBERON/00/UBERON_0013500.md +++ b/md/UBERON/00/UBERON_0013500.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013500 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0013600.md b/md/UBERON/00/UBERON_0013600.md index 4dc13b00d6..4c42990c09 100644 --- a/md/UBERON/00/UBERON_0013600.md +++ b/md/UBERON/00/UBERON_0013600.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral terminal nucleus of the accessory optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:LT] + * lateral terminal nucleus of the accessory optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:LT ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0013700.md b/md/UBERON/00/UBERON_0013700.md index 03ed7c3ef2..7389bab67e 100644 --- a/md/UBERON/00/UBERON_0013700.md +++ b/md/UBERON/00/UBERON_0013700.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013700 * *Label* = axial musculature - * *Definition* = Musculature of the head and neck, spine, and ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003327] + * *Definition* = Musculature of the head and neck, spine, and ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003327 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [axial skeleton plus cranial skeleton](../../UBERON/44/UBERON_0005944.md) and [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main body axis](../../UBERON/01/UBERON_0013701.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013700 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0014400.md b/md/UBERON/00/UBERON_0014400.md index 435b7e3fb8..7e7fa43143 100644 --- a/md/UBERON/00/UBERON_0014400.md +++ b/md/UBERON/00/UBERON_0014400.md @@ -6,7 +6,7 @@ ## Synonyms - * lumen of hepatic sinusoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:262090] + * lumen of hepatic sinusoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:262090 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hepatic sinusoid](../../UBERON/81/UBERON_0001281.md) and [sinusoidal space](../../UBERON/99/UBERON_0014399.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014400 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0014600.md b/md/UBERON/00/UBERON_0014600.md index 52dfe9e29e..a4d78d0b79 100644 --- a/md/UBERON/00/UBERON_0014600.md +++ b/md/UBERON/00/UBERON_0014600.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1388[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHmm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1388[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus medial magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmm] - * paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmm] - * paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmm] + * paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1388, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHmm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1388, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus medial magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmm ] + * paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmm ] + * paraventricular nucleus of the hypothalamus, magnocellular division, medial magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmm ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014600 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0014800.md b/md/UBERON/00/UBERON_0014800.md index 044f324474..29c46b7944 100644 --- a/md/UBERON/00/UBERON_0014800.md +++ b/md/UBERON/00/UBERON_0014800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014800 * *Label* = spinotrapezius muscle - * *Definition* = Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cat_anatomy#Spinotrapezius] + * *Definition* = Spinotrapezius, also called thoracic trapezius, is the most posterior of the three trapezius muscles. It is triangular shaped. Posterior to the acromiotrapezius and overlaps latissimus dorsi on the front. Its origin is the neural spines of the thoracic vertebrae and its insertion is the scapular fascia. Its action is to draw the scapula to the dorsal and caudal regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cat_anatomy#Spinotrapezius ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014800 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_0015100.md b/md/UBERON/00/UBERON_0015100.md index d43d24a1b4..6de0e48df5 100644 --- a/md/UBERON/00/UBERON_0015100.md +++ b/md/UBERON/00/UBERON_0015100.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone endochondral element](../../UBERON/99/UBERON_0015099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015100 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_1000000.md b/md/UBERON/00/UBERON_1000000.md index d24ea85ab5..2aa3fc3cd0 100644 --- a/md/UBERON/00/UBERON_1000000.md +++ b/md/UBERON/00/UBERON_1000000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000000 * *Label* = chin ventral margin - * *Definition* = Subdivision of the head consisting of the area along the lower edge of the chin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the area along the lower edge of the chin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000000 + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_1500000.md b/md/UBERON/00/UBERON_1500000.md index 1112683aa8..70828c2874 100644 --- a/md/UBERON/00/UBERON_1500000.md +++ b/md/UBERON/00/UBERON_1500000.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = PERSON: Alex Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2000000.md b/md/UBERON/00/UBERON_2000000.md index d6b15e2cfd..87276b30e6 100644 --- a/md/UBERON/00/UBERON_2000000.md +++ b/md/UBERON/00/UBERON_2000000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000000 * *Label* = Brachet's cleft - * *Definition* = The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2000300.md b/md/UBERON/00/UBERON_2000300.md index a4f0611d50..abf1622d9d 100644 --- a/md/UBERON/00/UBERON_2000300.md +++ b/md/UBERON/00/UBERON_2000300.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000300 * *Label* = ventral hypohyal bone - * *Definition* = Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lower hypohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000300] - * ventral hypohyals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000300[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * ventrohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000300] + * lower hypohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000300 ] + * ventral hypohyals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000300, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * ventrohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000300 ] ## Cross-references @@ -39,7 +39,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2000500.md b/md/UBERON/00/UBERON_2000500.md index b2b0303c06..5be16d3545 100644 --- a/md/UBERON/00/UBERON_2000500.md +++ b/md/UBERON/00/UBERON_2000500.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2000800.md b/md/UBERON/00/UBERON_2000800.md index ee6a87495a..2e067c77a3 100644 --- a/md/UBERON/00/UBERON_2000800.md +++ b/md/UBERON/00/UBERON_2000800.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000800[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000800, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_2000900.md b/md/UBERON/00/UBERON_2000900.md index 1e98d64f94..dde2826518 100644 --- a/md/UBERON/00/UBERON_2000900.md +++ b/md/UBERON/00/UBERON_2000900.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000900 * *Label* = hypaxial region somite 4 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2001200.md b/md/UBERON/00/UBERON_2001200.md index 36475e5a03..d70685da06 100644 --- a/md/UBERON/00/UBERON_2001200.md +++ b/md/UBERON/00/UBERON_2001200.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001200 * *Label* = corpuscles of Stannius - * *Definition* = Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2001300.md b/md/UBERON/00/UBERON_2001300.md index 7573f93bce..d13bb34d5a 100644 --- a/md/UBERON/00/UBERON_2001300.md +++ b/md/UBERON/00/UBERON_2001300.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2001700.md b/md/UBERON/00/UBERON_2001700.md index f04ad818a0..7e2e7260fd 100644 --- a/md/UBERON/00/UBERON_2001700.md +++ b/md/UBERON/00/UBERON_2001700.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001700 * *Label* = caudal-fin stay - * *Definition* = Dermal bone that is located anterior to the caudal fin procurrent rays. Caudal fin stays are unpaired median bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located anterior to the caudal fin procurrent rays. Caudal fin stays are unpaired median bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Development of caudal fin stays appears uncertain according to several authors (e.g., Zanata and Vari 2005, Vari 1995). ## Synonyms - * caudal fin stay [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001700] + * caudal fin stay [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001700 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2001800.md b/md/UBERON/00/UBERON_2001800.md index 911f3c2964..d8964ba6f1 100644 --- a/md/UBERON/00/UBERON_2001800.md +++ b/md/UBERON/00/UBERON_2001800.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001800 * *Label* = cephalic rib - * *Definition* = Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2001900.md b/md/UBERON/00/UBERON_2001900.md index 50d28f1d31..181e8c2a10 100644 --- a/md/UBERON/00/UBERON_2001900.md +++ b/md/UBERON/00/UBERON_2001900.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2002000.md b/md/UBERON/00/UBERON_2002000.md index 29ee906122..6fdbc85ce8 100644 --- a/md/UBERON/00/UBERON_2002000.md +++ b/md/UBERON/00/UBERON_2002000.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002000 * *Label* = posterior dentation of pectoral fin spine - * *Definition* = Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pectoral fin spine posterior dentation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002000] - * posterior denticle of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002000] - * posterior serration of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002000] - * posterior thorn of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002000] - * posterior tooth of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002000] + * pectoral fin spine posterior dentation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002000 ] + * posterior denticle of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002000 ] + * posterior serration of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002000 ] + * posterior thorn of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002000 ] + * posterior tooth of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002000 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2002200.md b/md/UBERON/00/UBERON_2002200.md index 3970dfa1ff..9919998695 100644 --- a/md/UBERON/00/UBERON_2002200.md +++ b/md/UBERON/00/UBERON_2002200.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002200 * *Label* = hypobranchial muscle - * *Definition* = Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-080306-33] + * *Definition* = Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-080306-33 ] ## Synonyms - * sternohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002200] + * sternohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002200 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2005000.md b/md/UBERON/00/UBERON_2005000.md index 7ba6ef3572..b6712f8bd3 100644 --- a/md/UBERON/00/UBERON_2005000.md +++ b/md/UBERON/00/UBERON_2005000.md @@ -6,7 +6,7 @@ ## Synonyms - * BCA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005000] + * BCA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005000 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2005100.md b/md/UBERON/00/UBERON_2005100.md index 90f96db304..998f45d00c 100644 --- a/md/UBERON/00/UBERON_2005100.md +++ b/md/UBERON/00/UBERON_2005100.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005100 * *Label* = intervessel commissure - * *Definition* = Vessels that travel between artery and veins or vein and vein in a single ray. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vessels that travel between artery and veins or vein and vein in a single ray. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * intervessel comisures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005100[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * intervessel comisures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005100, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_2005200.md b/md/UBERON/00/UBERON_2005200.md index 084535fa92..58c096cb88 100644 --- a/md/UBERON/00/UBERON_2005200.md +++ b/md/UBERON/00/UBERON_2005200.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral lateral 2 caudal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005200] + * rostral lateral 2 caudal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005200 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_3000400.md b/md/UBERON/00/UBERON_3000400.md index 957d458323..027af51433 100644 --- a/md/UBERON/00/UBERON_3000400.md +++ b/md/UBERON/00/UBERON_3000400.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3000500.md b/md/UBERON/00/UBERON_3000500.md index efb63e3141..c865e96863 100644 --- a/md/UBERON/00/UBERON_3000500.md +++ b/md/UBERON/00/UBERON_3000500.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000500 * *Label* = processus posterior of maxilla - * *Definition* = Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3000800.md b/md/UBERON/00/UBERON_3000800.md index bd10c8684a..a2e9ff27db 100644 --- a/md/UBERON/00/UBERON_3000800.md +++ b/md/UBERON/00/UBERON_3000800.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000800 * *Label* = intercotylar space - * *Definition* = Space between the atlantal cotyles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Space between the atlantal cotyles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * spatium interglenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000800] + * spatium interglenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000800 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3001000.md b/md/UBERON/00/UBERON_3001000.md index d5f048d977..83f69c028e 100644 --- a/md/UBERON/00/UBERON_3001000.md +++ b/md/UBERON/00/UBERON_3001000.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_3010100.md b/md/UBERON/00/UBERON_3010100.md index 900573f43d..5958cd86d8 100644 --- a/md/UBERON/00/UBERON_3010100.md +++ b/md/UBERON/00/UBERON_3010100.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3010200.md b/md/UBERON/00/UBERON_3010200.md index b9394f95d5..20783a3af2 100644 --- a/md/UBERON/00/UBERON_3010200.md +++ b/md/UBERON/00/UBERON_3010200.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010200 * *Label* = cutaneous vasculature - * *Definition* = Blood vessels in skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Blood vessels in skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3010300.md b/md/UBERON/00/UBERON_3010300.md index 40a2508d01..c32e9de4ed 100644 --- a/md/UBERON/00/UBERON_3010300.md +++ b/md/UBERON/00/UBERON_3010300.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010300 * *Label* = obsolete secondary spermatogonium - * *Definition* = A type of germ cell that results from the mitotic division of a primary spermatogonium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISSN:0289-0003] + * *Definition* = A type of germ cell that results from the mitotic division of a primary spermatogonium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISSN:0289-0003 ] ## Synonyms - * secondary spermatogonia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010300] + * secondary spermatogonia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010300 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000657 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/00/UBERON_3010500.md b/md/UBERON/00/UBERON_3010500.md index bb36be67fb..b6acbe610d 100644 --- a/md/UBERON/00/UBERON_3010500.md +++ b/md/UBERON/00/UBERON_3010500.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010500 * *Label* = gastrico-linealis - * *Definition* = Major branch which supplies blood to the spleen and dorsal wall of the stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Major branch which supplies blood to the spleen and dorsal wall of the stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_3010700.md b/md/UBERON/00/UBERON_3010700.md index bc7126f065..b43786f8f7 100644 --- a/md/UBERON/00/UBERON_3010700.md +++ b/md/UBERON/00/UBERON_3010700.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010700 * *Label* = levator mandibulae externus - * *Definition* = Responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_4100000.md b/md/UBERON/00/UBERON_4100000.md index 1d886e3316..f7dcfa1eff 100644 --- a/md/UBERON/00/UBERON_4100000.md +++ b/md/UBERON/00/UBERON_4100000.md @@ -21,14 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical projection](../../UBERON/29/UBERON_0004529.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_4200000.md b/md/UBERON/00/UBERON_4200000.md index 13f2dff977..9fd1b0c4cc 100644 --- a/md/UBERON/00/UBERON_4200000.md +++ b/md/UBERON/00/UBERON_4200000.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4200000 * *Label* = medial blade of ilium - * *Definition* = The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = TA Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_4200100.md b/md/UBERON/00/UBERON_4200100.md index 5a4039dd8b..eb907d0d2a 100644 --- a/md/UBERON/00/UBERON_4200100.md +++ b/md/UBERON/00/UBERON_4200100.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/00/UBERON_4400000.md b/md/UBERON/00/UBERON_4400000.md index eabd7ff53b..15dc622600 100644 --- a/md/UBERON/00/UBERON_4400000.md +++ b/md/UBERON/00/UBERON_4400000.md @@ -3,8 +3,8 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4400000 * *Label* = metapterygium - * *Definition* = The posterior and innermost of the three principal basal cartilages in the fins of fishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/Metapterygium] - * *Comment* = Relevant to Elasmobranchii and Holocephali. It is usually the longest basal and is exceptionally long in males where it is distally modified into a clasper. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/DicPics/metapterygium.htm] + * *Definition* = The posterior and innermost of the three principal basal cartilages in the fins of fishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/Metapterygium ] + * *Comment* = Relevant to Elasmobranchii and Holocephali. It is usually the longest basal and is exceptionally long in males where it is distally modified into a clasper. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/DicPics/metapterygium.htm ] ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0000101.md b/md/UBERON/01/UBERON_0000101.md index 66545e1f12..cbaff2dd23 100644 --- a/md/UBERON/01/UBERON_0000101.md +++ b/md/UBERON/01/UBERON_0000101.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000101 * *Label* = lobe of lung - * *Definition* = A lung lobe is one of the rounded projections that compose the lung[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:GO] + * *Definition* = A lung lobe is one of the rounded projections that compose the lung[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:GO ] ## Synonyms * lung lobe * pulminory lobe - * pulmonary lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7311] + * pulmonary lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7311 ] ## Cross-references * FMA:7311 * OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA * SCTID:245524004 - * UMLS:C0225752 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lung_Lobe] + * UMLS:C0225752 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lung_Lobe ] * galen:LobeOfLung * ncithesaurus:Lung_Lobe @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0000201.md b/md/UBERON/01/UBERON_0000201.md index 3ca4df349d..a261a4ff00 100644 --- a/md/UBERON/01/UBERON_0000201.md +++ b/md/UBERON/01/UBERON_0000201.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000201 * *Label* = endothelial blood brain barrier - * *Definition* = A blood brain barrier that is composed of endothelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A blood brain barrier that is composed of endothelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood brain barrier](../../UBERON/20/UBERON_0000120.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [endothelial cell](../../CL/15/CL_0000115.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-10T08:15:44Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0000301.md b/md/UBERON/01/UBERON_0000301.md index 25ff3f1240..64721384aa 100644 --- a/md/UBERON/01/UBERON_0000301.md +++ b/md/UBERON/01/UBERON_0000301.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000301 * *Label* = amniotic cavity - * *Definition* = A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011199] + * *Definition* = A closed space between the embryo and the amnion which contains the amniotic fluid and is formed by the fusion of the parts of the anterior and posterior amniotic folds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011199 ] ## Synonyms - * cavitas amniotica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amniotic_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavitas amniotica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amniotic_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:16079 * FMA:63941 * SCTID:280366002 - * UMLS:C0230976 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Amniotic_Cavity] + * UMLS:C0230976 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Amniotic_Cavity ] * VHOG:0000855 * Wikipedia:Amniotic_cavity * http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The closed sac between the embryo and the amnion, containing the amniotic fluid. [Free_Online_Medical_Dictionary] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0000401.md b/md/UBERON/01/UBERON_0000401.md index 1ab33a8907..dc800372c2 100644 --- a/md/UBERON/01/UBERON_0000401.md +++ b/md/UBERON/01/UBERON_0000401.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000401 * *Label* = mandibular ramus - * *Definition* = The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ramus_of_the_mandible] + * *Definition* = The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ramus_of_the_mandible ] ## Synonyms - * mandible ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002815] - * ramus of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52828] - * lower ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ramus_of_the_mandible] - * rami mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ramus_of_the_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ramus mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ramus_of_the_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ramus_of_the_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mandible ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002815 ] + * ramus of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52828 ] + * lower ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ramus_of_the_mandible ] + * rami mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ramus_of_the_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ramus mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ramus_of_the_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ramus_of_the_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001001.md b/md/UBERON/01/UBERON_0001001.md index 36b482316d..90f6cedac6 100644 --- a/md/UBERON/01/UBERON_0001001.md +++ b/md/UBERON/01/UBERON_0001001.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001001 * *Label* = chitin-based cuticle - * *Definition* = The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuticle#Invertebrate_zoology[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764] + * *Definition* = The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuticle#Invertebrate_zoology, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764 ] * *Comment* = TODO - split from exoskeleton? Also: See above sf item to see if this belongs in GO ## Synonyms * exoskeleton - * cuticle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004970] + * cuticle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004970 ] * arthropod cuticle * insect cuticle @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [chitin](../../CHEBI/29/CHEBI_17029.md) and [cuticle](../../UBERON/02/UBERON_0001002.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:FBbt_00004970 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001101.md b/md/UBERON/01/UBERON_0001101.md index 3043224fc1..afe0790417 100644 --- a/md/UBERON/01/UBERON_0001101.md +++ b/md/UBERON/01/UBERON_0001101.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001101 * *Label* = external jugular vein - * *Definition* = The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_jugular_vein] + * *Definition* = The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_jugular_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * external jugular venous tree - * external jugular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000468] - * vena jugularis externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_jugular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * external jugular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000468 ] + * vena jugularis externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_jugular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002156 * OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA * SCTID:181373000 - * UMLS:C0226543 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Jugular_Vein] + * UMLS:C0226543 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Jugular_Vein ] * Wikipedia:External_jugular_vein * XAO:0000379 * galen:ExternalJugularVein @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001201.md b/md/UBERON/01/UBERON_0001201.md index 91aff39a8f..f6e20c1886 100644 --- a/md/UBERON/01/UBERON_0001201.md +++ b/md/UBERON/01/UBERON_0001201.md @@ -3,52 +3,52 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001201 * *Label* = serosa of stomach - * *Definition* = A serous membrane that is part of a wall of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a wall of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check serosa/peritoneum ## Synonyms - * anatomical wall of stomach serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of stomach serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of ventriculus serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of ventriculus serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of anatomical wall of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of anatomical wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of gastric wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of stomach anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of stomach wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of ventriculus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of ventriculus wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of wall of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of stomach serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of stomach serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of ventriculus serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of ventriculus serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of anatomical wall of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of anatomical wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of gastric wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of stomach anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of stomach wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of ventriculus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of ventriculus wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of wall of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serous coat of stomach - * serous membrane of anatomical wall of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of anatomical wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of gastric wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of stomach anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of stomach wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of ventriculus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of ventriculus wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of wall of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach anatomical wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach anatomical wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * serous membrane of anatomical wall of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of anatomical wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of gastric wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of stomach anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of stomach wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of ventriculus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of ventriculus wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of wall of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach anatomical wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach anatomical wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * stomach serosa - * stomach wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * stomach wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica serosa (gaster) - * tunica serosa gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventriculus anatomical wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus anatomical wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * tunica serosa gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventriculus anatomical wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus anatomical wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * visceral peritoneum of stomach - * wall of stomach serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of stomach serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of ventriculus serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of ventriculus serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * wall of stomach serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of stomach serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of ventriculus serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of ventriculus serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * gastric serosa ## Cross-references @@ -56,7 +56,7 @@ * FMA:14914 * MA:0001626 * SCTID:1353004 - * UMLS:C1517453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Serosal_Surface] + * UMLS:C1517453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Serosal_Surface ] * ncithesaurus:Gastric_Serosal_Surface ## Subsets @@ -70,15 +70,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [wall of stomach](../../UBERON/67/UBERON_0001167.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001301.md b/md/UBERON/01/UBERON_0001301.md index bfdb717cc0..3e609f5070 100644 --- a/md/UBERON/01/UBERON_0001301.md +++ b/md/UBERON/01/UBERON_0001301.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001301 * *Label* = epididymis - * *Definition* = A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epididymis] + * *Definition* = A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epididymis ] * *Comment* = Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells. ## Synonyms * epididymus - * Nebenhoden@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000408] + * Nebenhoden@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000408 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A05.360.444.849.286 * MIAA:0000130 * SCTID:181432000 - * UMLS:C0014533 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epididymis] + * UMLS:C0014533 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epididymis ] * VHOG:0001265 * Wikipedia:Epididymis * galen:Epididymis @@ -57,8 +57,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epididymal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001401.md b/md/UBERON/01/UBERON_0001401.md index b4464f8cfe..1596da52e7 100644 --- a/md/UBERON/01/UBERON_0001401.md +++ b/md/UBERON/01/UBERON_0001401.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001401 * *Label* = longissimus thoracis muscle - * *Definition* = The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longissimus#Longissimus_thoracis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29] + * *Definition* = The longissimus thoracis is the intermediate and largest of the continuations of the sacrospinalis.[WP]. intermediate erector spinae muscle of back; origin, with iliocostalis and from transverse processes of lower thoracic vertebrae; insertion, by lateral slips into most or all of the ribs between angles and tubercles and into tips of transverse processes of upper lumbar vertebrae, and by medial slips into accessory processes of upper lumbar and transverse processes of thoracic vertebrae; action, extends vertebral column; nerve supply, dorsal primary rami of thoracic and lumbar spinal nerves[Stedmans]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longissimus#Longissimus_thoracis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29 ] * *Comment* = Editor's note: TODO - add logical definition to determine if AAO class belongs here. Classified as erector spinae in AAO ## Synonyms - * longissimus dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001651] + * longissimus dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001651 ] * longissimus dorsi muscle - * longissimus thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002339] - * musculus longissimus dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus longissimus thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001651[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * longissimus thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002339 ] + * musculus longissimus dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=longissimus+thoracis+%28muscle%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus longissimus thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001651, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:22709 * MA:0002339 * SCTID:244859003 - * UMLS:C0224307 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longissimus_Thoracis] + * UMLS:C0224307 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longissimus_Thoracis ] * Wikipedia:Longissimus#Longissimus_thoracis * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png * ncithesaurus:Longissimus_Thoracis @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epaxial muscle which originates on the antero-lateral urostyle and inserts variably along the neural spines and transverse processes of the presacral vertebrae to the exoccipital bone.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001501.md b/md/UBERON/01/UBERON_0001501.md index a18f644b49..ec2a2bed1b 100644 --- a/md/UBERON/01/UBERON_0001501.md +++ b/md/UBERON/01/UBERON_0001501.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001501 * *Label* = lumbrical muscle of manus - * *Definition* = The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbricals_of_the_hand] + * *Definition* = The lumbricals are intrinsic muscles of the manus that flex the metacarpophalangeal joints and extend the interphalangeal joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbricals_of_the_hand ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * hand lumbrical - * hand lumbrical muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002316] - * lumbrical of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37385] - * musculi lumbricales manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbricals_of_the_hand[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hand lumbrical muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002316 ] + * lumbrical of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37385 ] + * musculi lumbricales manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbricals_of_the_hand, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001601.md b/md/UBERON/01/UBERON_0001601.md index a101ade5ee..d8bdf0684f 100644 --- a/md/UBERON/01/UBERON_0001601.md +++ b/md/UBERON/01/UBERON_0001601.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001601 * *Label* = extra-ocular muscle - * *Definition* = Skeletal muscle derived from cranial mesoderm and controls eye movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002074[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extraocular_muscles] + * *Definition* = Skeletal muscle derived from cranial mesoderm and controls eye movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002074, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extraocular_muscles ] * *Comment* = AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles. ## Synonyms * extra-ocular skeletal muscle - * extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49033] - * extraocular musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000511] - * extraocular skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001271] - * extrinsic eye muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * extrinsic muscle of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49033] - * extrinsic ocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000482] - * musculi externi bulbi oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extraocular_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49033 ] + * extraocular musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000511 ] + * extraocular skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001271 ] + * extrinsic eye muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * extrinsic muscle of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49033 ] + * extrinsic ocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000482 ] + * musculi externi bulbi oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extraocular_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -63,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these (extrinsic ocular) muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006229 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001701.md b/md/UBERON/01/UBERON_0001701.md index c97596e59c..175d72ddc8 100644 --- a/md/UBERON/01/UBERON_0001701.md +++ b/md/UBERON/01/UBERON_0001701.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001701 * *Label* = glossopharyngeal ganglion - * *Definition* = the group of neuron cell bodies associated with the ninth cranial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001096] + * *Definition* = the group of neuron cell bodies associated with the ninth cranial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001096 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ganglion of glossopharyngeal nerve - * ganglion of glosspharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53471] - * glossopharyngeal IX ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001077] - * petrosal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001301] + * ganglion of glosspharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53471 ] + * glossopharyngeal IX ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001077 ] + * petrosal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001301 ] * gIX ## Cross-references @@ -47,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001801.md b/md/UBERON/01/UBERON_0001801.md index a7eeb528cd..c0079147c1 100644 --- a/md/UBERON/01/UBERON_0001801.md +++ b/md/UBERON/01/UBERON_0001801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001801 * *Label* = anterior segment of eyeball - * *Definition* = The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_segment_of_eyeball] + * *Definition* = The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_segment_of_eyeball ] ## Synonyms @@ -12,7 +12,7 @@ * anterior segment of the eye * eye anterior segment * segmentum anterius (bulbus oculi) - * segmentum anterius bulbi oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_segment_of_eyeball[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * segmentum anterius bulbi oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_segment_of_eyeball, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002484 * MESH:A09.371.060 * SCTID:280658001 - * UMLS:C0003153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Eye_Segment] + * UMLS:C0003153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Eye_Segment ] * Wikipedia:Anterior_segment_of_eyeball * ZFA:0005566 * http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0001901.md b/md/UBERON/01/UBERON_0001901.md index a3661ffb50..0453b4a34a 100644 --- a/md/UBERON/01/UBERON_0001901.md +++ b/md/UBERON/01/UBERON_0001901.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001901 * *Label* = epithelium of trachea - * *Definition* = An epithelium that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trachea epithelium * tracheal epithelium - * windpipe epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * windpipe epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ * EMAPA:18409 * FMA:62015 * MA:0001862 - * UMLS:C1179002 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tracheal_Epithelium] + * UMLS:C1179002 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tracheal_Epithelium ] * VHOG:0001045 * ncithesaurus:Tracheal_Epithelium @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003227 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002001.md b/md/UBERON/01/UBERON_0002001.md index eb65d60b25..7409a5169c 100644 --- a/md/UBERON/01/UBERON_0002001.md +++ b/md/UBERON/01/UBERON_0002001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002001 * *Label* = joint of rib - * *Definition* = Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -14,7 +14,7 @@ * FMA_RETIRED:64994 * MA:0001508 * SCTID:263314001 - * UMLS:C1261194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Joint_of_the_Rib] + * UMLS:C1261194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Joint_of_the_Rib ] * ncithesaurus:Joint_of_the_Rib ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [rib](../../UBERON/28/UBERON_0002228.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002101.md b/md/UBERON/01/UBERON_0002101.md index e6d5e02d88..c8a010c2a6 100644 --- a/md/UBERON/01/UBERON_0002101.md +++ b/md/UBERON/01/UBERON_0002101.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002101 * *Label* = limb - * *Definition* = A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * *Definition* = A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] ## Synonyms - * free limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24875] - * limb sensu vertebrata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MAT:0000090] + * free limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24875 ] + * limb sensu vertebrata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MAT:0000090 ] * pentadactyl limb * tetrapod limb - * flipper [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * extremities [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * flipper [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * extremities [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * extremity ## Cross-references @@ -32,7 +32,7 @@ * MIAA:0000090 * OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA * SCTID:243996003 - * UMLS:C0015385 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Limb] + * UMLS:C0015385 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Limb ] * VHOG:0000336 * VSAO:0000121 * Wikipedia:Limb @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002201.md b/md/UBERON/01/UBERON_0002201.md index cc08cbaf99..25a5a59a86 100644 --- a/md/UBERON/01/UBERON_0002201.md +++ b/md/UBERON/01/UBERON_0002201.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002201 * *Label* = vasculature of trunk - * *Definition* = A vasculature that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * torso vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * torso vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trunk vasculature - * vascular network of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular network of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasculature of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * vascular network of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular network of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasculature of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002301.md b/md/UBERON/01/UBERON_0002301.md index daaaeca5d0..3b8b21da58 100644 --- a/md/UBERON/01/UBERON_0002301.md +++ b/md/UBERON/01/UBERON_0002301.md @@ -6,10 +6,10 @@ ## Synonyms - * layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83138] - * neocortex layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000186] + * layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83138 ] + * neocortex layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000186 ] * cortical layer - * cerebral cortex layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000186] + * cerebral cortex layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000186 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002401.md b/md/UBERON/01/UBERON_0002401.md index 3b13e12a05..284a5f65a9 100644 --- a/md/UBERON/01/UBERON_0002401.md +++ b/md/UBERON/01/UBERON_0002401.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002401 * *Label* = visceral pleura - * *Definition* = Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_pleura] + * *Definition* = Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_pleura ] * *Comment* = See comments for pleura ## Synonyms - * pleura pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9734[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pleura pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9734, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pleura visceralis (pulmonalis) - * pleura visceralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_pleura[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pleura visceralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_pleura, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pulmonary pleura - * lung mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002205] + * lung mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002205 ] * lung pleura ## Cross-references @@ -22,7 +22,7 @@ * MA:0002489 * OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA * SCTID:361997008 - * UMLS:C0225776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Visceral_Pleura] + * UMLS:C0225776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Visceral_Pleura ] * VHOG:0001496 * Wikipedia:Visceral_pleura * http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Each lung is invested by an exceedingly delicate serous membrane, the pleura, which is arranged in the form of a closed invaginated sac. A portion of the serous membrane covers the surface of the lung and dips into the fissures between its lobes; it is called the pulmonary pleura (or visceral pleura). The visceral pleura is attached directly to the lungs[Wikipedia:Visceral_pleura]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002501.md b/md/UBERON/01/UBERON_0002501.md index 7fa35dba4d..70bb82a724 100644 --- a/md/UBERON/01/UBERON_0002501.md +++ b/md/UBERON/01/UBERON_0002501.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002501 * *Label* = oval window - * *Definition* = The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oval_window] + * *Definition* = The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oval_window ] ## Synonyms * oval window of petrous part of temporal bone - * fenestra ovalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oval_window[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fenestra vestibuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oval_window[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibular window [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002813] + * fenestra ovalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oval_window, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fenestra vestibuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oval_window, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibular window [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002813 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002601.md b/md/UBERON/01/UBERON_0002601.md index f2839b66c0..0decec03a9 100644 --- a/md/UBERON/01/UBERON_0002601.md +++ b/md/UBERON/01/UBERON_0002601.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002601 * *Label* = fasciolar gyrus - * *Definition* = a small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002497[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Fasciolar_gyrus] + * *Definition* = a small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002497, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Fasciolar_gyrus ] * *Comment* = TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym ## Synonyms - * retrosplenial gyrus of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61921] - * commissure of the fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FG] - * fasciola cinerea (Reil, Arnold) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:176] - * fasciola cinerea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002497] - * fasciola cinereum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:176] - * gyrus fasciolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002497] - * gyrus retrosplenialis hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:176[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * retrosplenial gyrus of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61921 ] + * commissure of the fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FG ] + * fasciola cinerea (Reil, Arnold) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:176 ] + * fasciola cinerea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002497 ] + * fasciola cinereum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:176 ] + * gyrus fasciolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002497 ] + * gyrus retrosplenialis hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:176, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,9 +24,9 @@ * BTO:0002497 * FMA:61921 * NIF_GrossAnatomy:birnlex_1129 - * NeuroNames:176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1129] + * NeuroNames:176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1129 ] * SCTID:279210001 - * UMLS:C0152332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1129] + * UMLS:C0152332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1129 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002701.md b/md/UBERON/01/UBERON_0002701.md index 9cf896b018..e7a21bd037 100644 --- a/md/UBERON/01/UBERON_0002701.md +++ b/md/UBERON/01/UBERON_0002701.md @@ -6,15 +6,15 @@ ## Synonyms - * anterior medial visceral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54524] - * anterior median nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72423] - * anterior median nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * ventral medial nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54524] - * ventral medial visceral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54524] - * AM3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Paxinos-Franklin-mouse-2001_abbrevSource,NIF_GrossAnatomy:birnlex_1445[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus anteromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54524] - * nucleus anteromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54524] - * nucleus nervi oculomotorii medianus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:497[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior medial visceral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54524 ] + * anterior median nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72423 ] + * anterior median nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * ventral medial nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54524 ] + * ventral medial visceral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54524 ] + * AM3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Paxinos-Franklin-mouse-2001_abbrevSource,NIF_GrossAnatomy:birnlex_1445, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus anteromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54524 ] + * nucleus anteromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54524 ] + * nucleus nervi oculomotorii medianus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:497, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:54524 * FMA:72423 * NIF_GrossAnatomy:birnlex_1445 - * NeuroNames:497 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1445] - * UMLS:C0175382 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1445] + * NeuroNames:497 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1445 ] + * UMLS:C0175382 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1445 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002801.md b/md/UBERON/01/UBERON_0002801.md index 138fa81976..e4c49a0987 100644 --- a/md/UBERON/01/UBERON_0002801.md +++ b/md/UBERON/01/UBERON_0002801.md @@ -6,16 +6,16 @@ ## Synonyms - * neuraxis stratum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83905] - * stratum zonale thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1727] - * stratum zonale of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:374] + * neuraxis stratum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83905 ] + * stratum zonale thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1727 ] + * stratum zonale of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:374 ] ## Cross-references * BAMS:SZ * FMA:83905 * NIF_GrossAnatomy:birnlex_1727 - * NeuroNames:374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1727] + * NeuroNames:374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1727 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0002901.md b/md/UBERON/01/UBERON_0002901.md index bc741e511d..dc04c10188 100644 --- a/md/UBERON/01/UBERON_0002901.md +++ b/md/UBERON/01/UBERON_0002901.md @@ -6,19 +6,19 @@ ## Synonyms - * postcalcarine sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83787] - * posterior calcarine fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83787] - * posterior part of calcarine sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83787] - * sulcus calcarinus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4015] - * pccs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4015[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * postcalcarine sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83787 ] + * posterior calcarine fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83787 ] + * posterior part of calcarine sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83787 ] + * sulcus calcarinus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4015 ] + * pccs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4015, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:pccs * FMA:83787 * NIF_GrossAnatomy:birnlex_4015 - * NeuroNames:149 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4015] - * UMLS:C0262311 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4015] + * NeuroNames:149 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4015 ] + * UMLS:C0262311 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4015 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003001.md b/md/UBERON/01/UBERON_0003001.md index 7a9148f62d..a67a8a4852 100644 --- a/md/UBERON/01/UBERON_0003001.md +++ b/md/UBERON/01/UBERON_0003001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003001 * *Label* = lemniscus - * *Definition* = A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_881[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lemniscus_(anatomy)] + * *Definition* = A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_881, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lemniscus_(anatomy) ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003101.md b/md/UBERON/01/UBERON_0003101.md index 5b3efac226..e3e1cc80b0 100644 --- a/md/UBERON/01/UBERON_0003101.md +++ b/md/UBERON/01/UBERON_0003101.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003101 * *Label* = male organism - * *Definition* = Gonochoristic organism that can produce male gametes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000027] + * *Definition* = Gonochoristic organism that can produce male gametes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000027 ] ## Synonyms - * male human body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67811[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000242] + * male human body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67811, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000242 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003201.md b/md/UBERON/01/UBERON_0003201.md index 34fe882e39..427e7131da 100644 --- a/md/UBERON/01/UBERON_0003201.md +++ b/md/UBERON/01/UBERON_0003201.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003201 * *Label* = exocuticle - * *Definition* = The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001602] + * *Definition* = The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001602 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003301.md b/md/UBERON/01/UBERON_0003301.md index 889e105d7d..40a7e4c867 100644 --- a/md/UBERON/01/UBERON_0003301.md +++ b/md/UBERON/01/UBERON_0003301.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003301 * *Label* = roof plate of diencephalon - * *Definition* = A roof plate that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * between brain roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate diencephalic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001358] - * roof plate diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000771] - * roof plate of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate medulla diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000771] + * between brain roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate diencephalic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001358 ] + * roof plate diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000771 ] + * roof plate of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate medulla diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000771 ] ## Cross-references @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the diencephalon. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003501.md b/md/UBERON/01/UBERON_0003501.md index 627bfcadaf..fff604c527 100644 --- a/md/UBERON/01/UBERON_0003501.md +++ b/md/UBERON/01/UBERON_0003501.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003501 * *Label* = retina blood vessel - * *Definition* = A blood vessel that is part of a retina [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a retina [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of inner layer of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of tunica interna of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner layer of eyeball blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * retinal blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica interna of eyeball blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of inner layer of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of tunica interna of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner layer of eyeball blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * retinal blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica interna of eyeball blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [retina](../../UBERON/66/UBERON_0000966.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003601.md b/md/UBERON/01/UBERON_0003601.md index 37db07c993..701baa8c02 100644 --- a/md/UBERON/01/UBERON_0003601.md +++ b/md/UBERON/01/UBERON_0003601.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003601 * *Label* = neck cartilage - * *Definition* = A cartilage that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cartilage of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cartilage of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003701.md b/md/UBERON/01/UBERON_0003701.md index 05edad6655..a3ed0c5d52 100644 --- a/md/UBERON/01/UBERON_0003701.md +++ b/md/UBERON/01/UBERON_0003701.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003701 * *Label* = calcaneal tendon - * *Definition* = The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Achilles_tendon] + * *Definition* = The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Achilles_tendon ] * *Comment* = AO notes: in FMA this is a ligament, and part of the muscle ## Synonyms * Achille's tendon - * Achilles tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002993] + * Achilles tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002993 ] * Achilles' tendon - * calcaneal tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:51061] - * tendo Achillis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Achilles_tendon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tendo calcaneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002993[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * calcaneal tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:51061 ] + * tendo Achillis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Achilles_tendon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tendo calcaneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002993, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A02.880.176 * OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA * SCTID:181705009 - * UMLS:C0001074 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Achilles_Tendon] + * UMLS:C0001074 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Achilles_Tendon ] * Wikipedia:Achilles_tendon * http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg * ncithesaurus:Achilles_Tendon @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [calcaneus](../../UBERON/50/UBERON_0001450.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0003901.md b/md/UBERON/01/UBERON_0003901.md index bae6eed783..b3c76c2976 100644 --- a/md/UBERON/01/UBERON_0003901.md +++ b/md/UBERON/01/UBERON_0003901.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003901 * *Label* = horizontal septum - * *Definition* = A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000671] + * *Definition* = A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000671 ] ## Synonyms - * horizontal myoseptum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000671] + * horizontal myoseptum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000671 ] * horizontal septum of vertebra ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. Kimmel et al, 1995.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass myoseptum (TAO:0001089)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004001.md b/md/UBERON/01/UBERON_0004001.md index 9368d4ae58..b6d7887cc4 100644 --- a/md/UBERON/01/UBERON_0004001.md +++ b/md/UBERON/01/UBERON_0004001.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004001 * *Label* = olfactory bulb layer - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009946] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009946 ] * *Comment* = TODO - check isa parentage ## Synonyms - * cytoarchitectural part of olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090402] + * cytoarchitectural part of olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090402 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004101.md b/md/UBERON/01/UBERON_0004101.md index d5e6c1cb72..5d2020e98a 100644 --- a/md/UBERON/01/UBERON_0004101.md +++ b/md/UBERON/01/UBERON_0004101.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004101 * *Label* = nasolabial region - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0005289] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0005289 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004201.md b/md/UBERON/01/UBERON_0004201.md index 743546e57c..080266877a 100644 --- a/md/UBERON/01/UBERON_0004201.md +++ b/md/UBERON/01/UBERON_0004201.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004201 * *Label* = kidney outer medulla inner stripe - * *Definition* = The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072057] + * *Definition* = The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072057 ] ## Synonyms - * inner stripe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072057] - * inner stripe of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76663] - * inner stripe of outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29675] - * inner stripe of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76663] - * outer medulla inner stripe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002626] - * stria interna medullae renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76663[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inner stripe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072057 ] + * inner stripe of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76663 ] + * inner stripe of outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29675 ] + * inner stripe of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76663 ] + * outer medulla inner stripe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002626 ] + * stria interna medullae renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76663, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004301.md b/md/UBERON/01/UBERON_0004301.md index b9ba0f100b..f6c1b96cc0 100644 --- a/md/UBERON/01/UBERON_0004301.md +++ b/md/UBERON/01/UBERON_0004301.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004301 * *Label* = middle phalanx - * *Definition* = A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_phalanges] + * *Definition* = A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_phalanges ] * *Comment* = Taxon notes: in some groups such as whales, there are multiple intermediate phalanges. Editors note: consider using numbering system, and axioms to the effect that there is a single middle phalanx per finger in humans. This should perhaps be renamed 'intermediate phalanx', leaving the term middle phalanx open for the specific intermediate phalanx of a 3-phalanx digit ## Synonyms * intermediate phalanx * medial phalanx - * penultimate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010677] + * penultimate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010677 ] * phalanx 2 * phalanx II @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [phalanx](../../UBERON/21/UBERON_0003221.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) and [proximally connected to](../../core#proximally/to/core#proximally_connected_to.md) some [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004401.md b/md/UBERON/01/UBERON_0004401.md index cb53abe636..d8060402dd 100644 --- a/md/UBERON/01/UBERON_0004401.md +++ b/md/UBERON/01/UBERON_0004401.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004401 * *Label* = bone tissue of distal epiphysis - * *Definition* = A portion of bone tissue that is part of a distal epiphysis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of bone tissue that is part of a distal epiphysis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal epiphysis](../../UBERON/79/UBERON_0004379.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004501.md b/md/UBERON/01/UBERON_0004501.md index 2d0f8f532a..6ba210ec69 100644 --- a/md/UBERON/01/UBERON_0004501.md +++ b/md/UBERON/01/UBERON_0004501.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004501 * *Label* = skeletal muscle tissue of teres major - * *Definition* = A portion of skeletal muscle tissue that is part of a teres major [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a teres major [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [teres major muscle](../../UBERON/78/UBERON_0001478.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004601.md b/md/UBERON/01/UBERON_0004601.md index 3af0ef0d95..37d31a3322 100644 --- a/md/UBERON/01/UBERON_0004601.md +++ b/md/UBERON/01/UBERON_0004601.md @@ -3,21 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004601 * *Label* = rib 1 - * *Definition* = The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:First_rib] + * *Definition* = The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:First_rib ] * *Comment* = elements are to be defined spatially/topologically ## Synonyms - * Costa prima (I) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7597] - * first rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7597] - * costa prima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:First_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * costa I [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * costa prima (I) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7597 ] + * first rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7597 ] + * costa prima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:First_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7597 * MA:0001401 * SCTID:182016005 - * UMLS:C1709945 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_1] + * UMLS:C1709945 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_1 ] * Wikipedia:First_rib * http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray124.png/200px-Gray124.png @@ -40,8 +41,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004701.md b/md/UBERON/01/UBERON_0004701.md index 7bc703a278..d12a4bcadb 100644 --- a/md/UBERON/01/UBERON_0004701.md +++ b/md/UBERON/01/UBERON_0004701.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004701 * *Label* = venous system endothelium - * *Definition* = An endothelium that is part of a venous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a venous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0000714 - * UMLS:C1710626 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venous_System_Endothelium] + * UMLS:C1710626 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venous_System_Endothelium ] * ncithesaurus:Venous_System_Endothelium ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [venous system](../../UBERON/82/UBERON_0004582.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004801.md b/md/UBERON/01/UBERON_0004801.md index df6baae301..6bab65a999 100644 --- a/md/UBERON/01/UBERON_0004801.md +++ b/md/UBERON/01/UBERON_0004801.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004801 * *Label* = cervix epithelium - * *Definition* = An epithelium that is part of a uterine cervix [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a uterine cervix [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Histology notes: The epithelium of the cervix is varied. The ectocervix (more distal, by the vagina) is composed of nonkeratinized stratified squamous epithelium. The endocervix (more proximal, within the uterus) is composed of simple columnar epithelium[http://en.wikipedia.org/wiki/Cervix#Histology] ## Synonyms - * cervical canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cervical canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cervical epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000241] - * cervix epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cervical canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cervical canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cervical epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000241 ] + * cervix epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * CALOHA:TS-0137 * EFO:0001913 * MA:0001724 - * UMLS:C1711358 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervix_Epithelium] + * UMLS:C1711358 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervix_Epithelium ] * ncithesaurus:Cervix_Epithelium ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0004901.md b/md/UBERON/01/UBERON_0004901.md index 20ae873c71..f2b5513a8c 100644 --- a/md/UBERON/01/UBERON_0004901.md +++ b/md/UBERON/01/UBERON_0004901.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004901 * *Label* = right lung lobar bronchus mesenchyme - * *Definition* = The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012681] + * *Definition* = The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012681 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005001.md b/md/UBERON/01/UBERON_0005001.md index 4740948abc..c90f5efd6f 100644 --- a/md/UBERON/01/UBERON_0005001.md +++ b/md/UBERON/01/UBERON_0005001.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005001 * *Label* = mucosa of common hepatic duct - * *Definition* = A mucosa that is part of a common hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a common hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * common hepatic duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common hepatic duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common hepatic duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common hepatic duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common hepatic ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14691] - * hepatic duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hepatic duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hepatic duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hepatic duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of common hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of common hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of common hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * common hepatic duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common hepatic duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common hepatic duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common hepatic duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common hepatic ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14691 ] + * hepatic duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hepatic duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hepatic duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hepatic duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of common hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of common hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of common hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [common hepatic duct](../../UBERON/75/UBERON_0001175.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005101.md b/md/UBERON/01/UBERON_0005101.md index a0172b910d..e47ee2a283 100644 --- a/md/UBERON/01/UBERON_0005101.md +++ b/md/UBERON/01/UBERON_0005101.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005101 * *Label* = early distal convoluted tubule - * *Definition* = The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072067] + * *Definition* = The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072067 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005201.md b/md/UBERON/01/UBERON_0005201.md index 549a540de4..e18c20880d 100644 --- a/md/UBERON/01/UBERON_0005201.md +++ b/md/UBERON/01/UBERON_0005201.md @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = MA:0001937 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005201 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_0005301.md b/md/UBERON/01/UBERON_0005301.md index 14acdbcc7f..9a8937b336 100644 --- a/md/UBERON/01/UBERON_0005301.md +++ b/md/UBERON/01/UBERON_0005301.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005301 * *Label* = male preputial gland - * *Definition* = One of the sebaceous glands of the corona and neck of the glans penis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002717] + * *Definition* = One of the sebaceous glands of the corona and neck of the glans penis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002717 ] * *Comment* = FMA:19653 was previously placed here, but ISBN10:0123813611 states that no true equivalent in humans. See also https://sourceforge.net/tracker/index.php?func=detail&aid=3588536&group_id=76834&atid=1109502 ## Synonyms * preputial gland of male - * preputial gland of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19653] - * preputial gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001111[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30640] - * gland of Tyson [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001111] + * preputial gland of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19653 ] + * preputial gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001111, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30640 ] + * gland of Tyson [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001111 ] ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:30640 * EMAPA:30659 * MA:0000403 - * UMLS:C0227956 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Preputial_Gland] + * UMLS:C0227956 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Preputial_Gland ] * ncithesaurus:Preputial_Gland ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [preputial gland](../../UBERON/59/UBERON_0000359.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005401.md b/md/UBERON/01/UBERON_0005401.md index b5e6d5d84c..a9cd912232 100644 --- a/md/UBERON/01/UBERON_0005401.md +++ b/md/UBERON/01/UBERON_0005401.md @@ -7,8 +7,8 @@ ## Synonyms - * cerebral gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000823] - * cerebral grey matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000944] + * cerebral gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000823 ] + * cerebral grey matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000944 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005501.md b/md/UBERON/01/UBERON_0005501.md index b2d06a41cb..adb25cca84 100644 --- a/md/UBERON/01/UBERON_0005501.md +++ b/md/UBERON/01/UBERON_0005501.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005501 * *Label* = rhombomere lateral wall - * *Definition* = A neural tube lateral wall that is part of a rhombomere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural tube lateral wall that is part of a rhombomere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural tube lateral wall](../../UBERON/96/UBERON_0005496.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere](../../UBERON/92/UBERON_0001892.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005601.md b/md/UBERON/01/UBERON_0005601.md index b679db0506..bd301540bc 100644 --- a/md/UBERON/01/UBERON_0005601.md +++ b/md/UBERON/01/UBERON_0005601.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005601 * *Label* = dorsal mesocardium - * *Definition* = the part of the mesocardium dorsal to the embryonic heart; it breaks down to form the transverse sinus of the pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * *Definition* = the part of the mesocardium dorsal to the embryonic heart; it breaks down to form the transverse sinus of the pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] ## Synonyms @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mesentery of the embryonic heart. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0005701.md b/md/UBERON/01/UBERON_0005701.md index 3499ec36b8..d94f527a7b 100644 --- a/md/UBERON/01/UBERON_0005701.md +++ b/md/UBERON/01/UBERON_0005701.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005701 * *Label* = lower jaw molar odontogenic papilla - * *Definition* = An odontogenic papilla that is part of a lower jaw molar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a lower jaw molar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lower jaw molar dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001027] + * lower jaw molar dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001027 ] * lower molar mesenchyme ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw molar](../../UBERON/67/UBERON_0003667.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0006101.md b/md/UBERON/01/UBERON_0006101.md index f23abe952c..913e0c74bd 100644 --- a/md/UBERON/01/UBERON_0006101.md +++ b/md/UBERON/01/UBERON_0006101.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006101 * *Label* = Brodmann (1909) area 24 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] ## Synonyms - * B09-24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * BA24 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * Brodmann area 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * area 24 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68621] - * area 24 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * area cingularis anterior ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * ventral anterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1755] - * B09-24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * agranular cingulate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1007] - * anterior cingulate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1007] - * area 24 of Brodmann-1905 (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1007] - * brodmann's area 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1007] - * gyrus limbicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1007[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * BA24 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * Brodmann area 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * area 24 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68621 ] + * area 24 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * area cingularis anterior ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * ventral anterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1755 ] + * B09-24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * agranular cingulate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1007 ] + * anterior cingulate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1007 ] + * area 24 of Brodmann-1905 (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1007 ] + * brodmann's area 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1007 ] + * gyrus limbicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1007, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ACA * FMA:68621 * NIF_GrossAnatomy:birnlex_1755 - * NeuroNames:1007 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1755] - * UMLS:C1272542 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1755] + * NeuroNames:1007 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1755 ] + * UMLS:C1272542 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1755 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0006201.md b/md/UBERON/01/UBERON_0006201.md index dfe1d21bc2..b3dec66300 100644 --- a/md/UBERON/01/UBERON_0006201.md +++ b/md/UBERON/01/UBERON_0006201.md @@ -7,7 +7,7 @@ ## Synonyms - * superior cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50978] + * superior cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50978 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0006301.md b/md/UBERON/01/UBERON_0006301.md index 64a73e535a..3b3fbef689 100644 --- a/md/UBERON/01/UBERON_0006301.md +++ b/md/UBERON/01/UBERON_0006301.md @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0006601.md b/md/UBERON/01/UBERON_0006601.md index 8d2dfb9be5..59a622afc8 100644 --- a/md/UBERON/01/UBERON_0006601.md +++ b/md/UBERON/01/UBERON_0006601.md @@ -7,7 +7,7 @@ ## Synonyms - * presumptive epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001376] + * presumptive epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001376 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0006801.md b/md/UBERON/01/UBERON_0006801.md index 31a14294ea..0beee75b98 100644 --- a/md/UBERON/01/UBERON_0006801.md +++ b/md/UBERON/01/UBERON_0006801.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006801 * *Label* = proximal head of humerus - * *Definition* = Hemispherical structure on proximal epiphysis of humerus that articulates with glenoid cavity[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus#Humeral_head] + * *Definition* = Hemispherical structure on proximal epiphysis of humerus that articulates with glenoid cavity[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus#Humeral_head ] ## Synonyms - * head of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13304] - * caput humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000835[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus#Humeral_head] - * humeral head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13304[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:curators] + * head of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13304 ] + * caput humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000835, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus#Humeral_head ] + * humeral head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13304, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:curators ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:25050 * FMA:13304 * SCTID:181924000 - * UMLS:C0223683 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Humerus] + * UMLS:C0223683 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Humerus ] * Wikipedia:Upper_extremity_of_humerus#Humeral_head * galen:HeadOfHumerus * ncithesaurus:Head_of_the_Humerus @@ -30,7 +30,7 @@ * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) * [zone of long bone](../../UBERON/55/UBERON_0005055.md) * [part_of](../../BFO/50/BFO_0000050.md) some [proximal epiphysis of humerus](../../UBERON/11/UBERON_0004411.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [glenohumeral joint](../../UBERON/70/UBERON_0001470.md) * [connected to](../../UBREL/01/UBREL_0000001.md) some [glenoid fossa](../../UBERON/57/UBERON_0006657.md) ## Equivalencies @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hemispherical ball on the proximal end of the humerus that fits into the glenoid cavity of the pectoral girdle to form the shoulder joint[AAO]. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3000835 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0007301.md b/md/UBERON/01/UBERON_0007301.md index 56f2f30469..e1b1232679 100644 --- a/md/UBERON/01/UBERON_0007301.md +++ b/md/UBERON/01/UBERON_0007301.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007301 * *Label* = appendage blood vessel - * *Definition* = A blood vessel that is part of a limb/fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a limb/fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fin blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005299[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * limb blood vessel [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fin blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005299, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * limb blood vessel [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendage](../../UBERON/26/UBERON_0000026.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0007501.md b/md/UBERON/01/UBERON_0007501.md index be631d937b..2ae58bd9c5 100644 --- a/md/UBERON/01/UBERON_0007501.md +++ b/md/UBERON/01/UBERON_0007501.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007501 * *Label* = arborizing epithelial duct system - * *Definition* = A collection of connected epithelial tubes with a single portal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000001] + * *Definition* = A collection of connected epithelial tubes with a single portal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000001 ] ## Synonyms - * arborising epithelial duct system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000117] + * arborising epithelial duct system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000117 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003117 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0007601.md b/md/UBERON/01/UBERON_0007601.md index b1a9a06053..a665f61348 100644 --- a/md/UBERON/01/UBERON_0007601.md +++ b/md/UBERON/01/UBERON_0007601.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007601 * *Label* = ciliated epithelium - * *Definition* = Epithelium bearing vibratile cilia on the free surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/ciliated+epithelium] + * *Definition* = Epithelium bearing vibratile cilia on the free surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/ciliated+epithelium ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_part](../../BFO/51/BFO_0000051.md) some [ciliated epithelial cell](../../CL/67/CL_0000067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0007801.md b/md/UBERON/01/UBERON_0007801.md index 6aa1c3bb17..4252aaf377 100644 --- a/md/UBERON/01/UBERON_0007801.md +++ b/md/UBERON/01/UBERON_0007801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007801 * *Label* = pygostyle - * *Definition* = Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pygostyle] + * *Definition* = Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pygostyle ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0008001.md b/md/UBERON/01/UBERON_0008001.md index b4b7492227..3d01006b16 100644 --- a/md/UBERON/01/UBERON_0008001.md +++ b/md/UBERON/01/UBERON_0008001.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008001 * *Label* = irregular bone - * *Definition* = The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Irregular_bone] + * *Definition* = The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Irregular_bone ] ## Synonyms * os irregulare - * os irregulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Irregular_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os irregulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Irregular_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7477 * SCTID:421560006 - * UMLS:C0502414 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Irregular_Bone] + * UMLS:C0502414 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Irregular_Bone ] * Wikipedia:Irregular_bone * ncithesaurus:Irregular_Bone @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0008201.md b/md/UBERON/01/UBERON_0008201.md index 44bac1ac5d..d137d594b3 100644 --- a/md/UBERON/01/UBERON_0008201.md +++ b/md/UBERON/01/UBERON_0008201.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008201 * *Label* = scute - * *Definition* = A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scute] + * *Definition* = A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scute ] * *Comment* = Currently being reviewed by PHENOSCAPE:ad ## Synonyms - * scuta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scute[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * scutae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scute[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * scutum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scute] - * osteoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scute] + * scuta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scute, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * scutae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scute, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * scutum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scute ] + * osteoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scute ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0008801.md b/md/UBERON/01/UBERON_0008801.md index 23867a9be2..17f7b5b125 100644 --- a/md/UBERON/01/UBERON_0008801.md +++ b/md/UBERON/01/UBERON_0008801.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0009101.md b/md/UBERON/01/UBERON_0009101.md index bfe598cc33..47003115b3 100644 --- a/md/UBERON/01/UBERON_0009101.md +++ b/md/UBERON/01/UBERON_0009101.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0009201.md b/md/UBERON/01/UBERON_0009201.md index 1841d829a5..f006ed5ac7 100644 --- a/md/UBERON/01/UBERON_0009201.md +++ b/md/UBERON/01/UBERON_0009201.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009201 * *Label* = nephric duct - * *Definition* = A nephric duct is a tube that drains a primitive kidney[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072176] + * *Definition* = A nephric duct is a tube that drains a primitive kidney[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072176 ] * *Comment* = pronephric duct or mesonephric duct ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0009501.md b/md/UBERON/01/UBERON_0009501.md index 875bab07e8..5dacb358cc 100644 --- a/md/UBERON/01/UBERON_0009501.md +++ b/md/UBERON/01/UBERON_0009501.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009501 * *Label* = mesenchyme of fronto-nasal process - * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011266] + * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011266 ] ## Synonyms - * frontonasal mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011266] - * naso-frontal mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011266] + * frontonasal mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011266 ] + * naso-frontal mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011266 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [frontonasal prominence](../../UBERON/66/UBERON_0004066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0009601.md b/md/UBERON/01/UBERON_0009601.md index ebd2e3b4bd..62e1713b11 100644 --- a/md/UBERON/01/UBERON_0009601.md +++ b/md/UBERON/01/UBERON_0009601.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009601 * *Label* = mesenchyme of interdigital region of pes - * *Definition* = An interdigital region mesenchyme that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010001.md b/md/UBERON/01/UBERON_0010001.md index 0e42195794..9fa2c52099 100644 --- a/md/UBERON/01/UBERON_0010001.md +++ b/md/UBERON/01/UBERON_0010001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010001 * *Label* = cell cluster organ - * *Definition* = A multicellular anatomical strucure consisting of a few cells of various types which forms a discrete structure with a largely bona fide boundary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0010001] + * *Definition* = A multicellular anatomical strucure consisting of a few cells of various types which forms a discrete structure with a largely bona fide boundary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0010001 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010401.md b/md/UBERON/01/UBERON_0010401.md index dd0e46b6bd..b5183d4295 100644 --- a/md/UBERON/01/UBERON_0010401.md +++ b/md/UBERON/01/UBERON_0010401.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010401 * *Label* = spleen central arteriole - * *Definition* = A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * follicular arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002361] - * splenic central arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002361] + * follicular arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002361 ] + * splenic central arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002361 ] * central arteriole ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010501.md b/md/UBERON/01/UBERON_0010501.md index 06afb9a026..ce849c27b7 100644 --- a/md/UBERON/01/UBERON_0010501.md +++ b/md/UBERON/01/UBERON_0010501.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010701.md b/md/UBERON/01/UBERON_0010701.md index 155f2ed570..5676a53d99 100644 --- a/md/UBERON/01/UBERON_0010701.md +++ b/md/UBERON/01/UBERON_0010701.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010701 * *Label* = phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit mesenchyme](../../UBERON/02/UBERON_0010702.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010801.md b/md/UBERON/01/UBERON_0010801.md index 37f18d5e8f..8d2b446347 100644 --- a/md/UBERON/01/UBERON_0010801.md +++ b/md/UBERON/01/UBERON_0010801.md @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcaneum endochondral element](../../UBERON/14/UBERON_0015014.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0010901.md b/md/UBERON/01/UBERON_0010901.md index d917c3cc6b..ea3634cc23 100644 --- a/md/UBERON/01/UBERON_0010901.md +++ b/md/UBERON/01/UBERON_0010901.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010901 * *Label* = tarsometatarsus pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [tarsometatarsus](../../UBERON/95/UBERON_0008195.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0011201.md b/md/UBERON/01/UBERON_0011201.md index a67984f87e..18c815cf03 100644 --- a/md/UBERON/01/UBERON_0011201.md +++ b/md/UBERON/01/UBERON_0011201.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011201 * *Label* = muscle layer of small intestine - * *Definition* = A muscle layer that is part of a small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscular coat of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14932] - * muscular layer of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14932] - * muscularis externa of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14932] - * small intestine muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14932] - * tunica muscularis (intestinum tenue) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14932] - * tunica muscularis intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscular coat of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14932 ] + * muscular layer of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14932 ] + * muscularis externa of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14932 ] + * small intestine muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14932 ] + * tunica muscularis (intestinum tenue) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14932 ] + * tunica muscularis intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14932 * SCTID:362145004 - * UMLS:C0227269 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Muscular_Coat] + * UMLS:C0227269 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Muscular_Coat ] * ncithesaurus:Small_Intestinal_Muscular_Coat ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0011301.md b/md/UBERON/01/UBERON_0011301.md index f8cdf6a79f..b2ae4a73c1 100644 --- a/md/UBERON/01/UBERON_0011301.md +++ b/md/UBERON/01/UBERON_0011301.md @@ -6,7 +6,7 @@ ## Synonyms - * manubrium sterni pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001063] + * manubrium sterni pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001063 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0011601.md b/md/UBERON/01/UBERON_0011601.md index 4bae72222f..6bb9f13483 100644 --- a/md/UBERON/01/UBERON_0011601.md +++ b/md/UBERON/01/UBERON_0011601.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011601 * *Label* = gingiva of upper jaw - * *Definition* = A gingiva that is part of a upper jaw region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gingiva that is part of a upper jaw region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * gum of maxilla - * gum of upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18970] - * upper jaw gingiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59763] + * gum of upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18970 ] + * upper jaw gingiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59763 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gingiva](../../UBERON/28/UBERON_0001828.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0011801.md b/md/UBERON/01/UBERON_0011801.md index b8c0e93f41..ef0bf4f61f 100644 --- a/md/UBERON/01/UBERON_0011801.md +++ b/md/UBERON/01/UBERON_0011801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011801 * *Label* = dermal condensation of feather follicle - * *Definition* = A suprabasal cell population which together with the feather follicle placode develops into the feather follicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = A suprabasal cell population which together with the feather follicle placode develops into the feather follicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] * *Comment* = Taxon notes: The development of placodes where dermal condensations occur, an evolutionary novelty, required changes in gene expression and timing. However, such changes are known to be an important mechanism in the origin of morphological innovations in many other organisms (True and Carroll 2002, Prum 2005) ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [feather follicle placode](../../UBERON/83/UBERON_0011783.md) and [cell condensation](../../UBERON/85/UBERON_0011585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dermis](../../UBERON/67/UBERON_0002067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0011901.md b/md/UBERON/01/UBERON_0011901.md index 66409c133b..42cf64dbcc 100644 --- a/md/UBERON/01/UBERON_0011901.md +++ b/md/UBERON/01/UBERON_0011901.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011901 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0012101.md b/md/UBERON/01/UBERON_0012101.md index 7a1c39669c..33032b8431 100644 --- a/md/UBERON/01/UBERON_0012101.md +++ b/md/UBERON/01/UBERON_0012101.md @@ -19,8 +19,8 @@ ## Superclasses * [life cycle stage](../../UBERON/05/UBERON_0000105.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [post-embryonic stage](../../UBERON/92/UBERON_0000092.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0012301.md b/md/UBERON/01/UBERON_0012301.md index 24d0a6b6c8..54f8b0f216 100644 --- a/md/UBERON/01/UBERON_0012301.md +++ b/md/UBERON/01/UBERON_0012301.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [membranous urethra of male or female](../../UBERON/36/UBERON_0001336.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female urethra](../../UBERON/34/UBERON_0001334.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012301 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0012401.md b/md/UBERON/01/UBERON_0012401.md index 9a5a9a4d31..13da251550 100644 --- a/md/UBERON/01/UBERON_0012401.md +++ b/md/UBERON/01/UBERON_0012401.md @@ -6,13 +6,13 @@ ## Synonyms - * circular layer of small intestine muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * circular muscle coat of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * circular muscle layer of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * circular muscle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * short pitch helicoidal muscle layer of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * stratum circulare (tunica muscularis)(intestinum tenue) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14935] - * stratum helicoidale brevis gradus tunicae muscularis intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * circular layer of small intestine muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * circular muscle coat of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * circular muscle layer of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * circular muscle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * short pitch helicoidal muscle layer of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * stratum circulare (tunica muscularis)(intestinum tenue) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14935 ] + * stratum helicoidale brevis gradus tunicae muscularis intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [circular muscle layer](../../UBERON/68/UBERON_0012368.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine smooth muscle](../../UBERON/39/UBERON_0004239.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0013201.md b/md/UBERON/01/UBERON_0013201.md index 3232a06392..d98e98aa4d 100644 --- a/md/UBERON/01/UBERON_0013201.md +++ b/md/UBERON/01/UBERON_0013201.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013201 * *Label* = olfactory pathway - * *Definition* = Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.577.699] + * *Definition* = Set of nerve fibers conducting impulses from olfactory receptors to the cerebral cortex. It includes the olfactory nerve; olfactory bulb; olfactory tract, olfactory tubercle, anterior perforated substance, and olfactory cortex. The term rhinencephalon is restricted to structures in the CNS receiving fibers from the olfactory bulb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.577.699 ] ## Synonyms - * anterior perforated substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.577.699] - * rhinencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.577.699] + * anterior perforated substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.577.699 ] + * rhinencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.577.699 ] ## Cross-references @@ -26,11 +26,11 @@ * [cell part cluster of neuraxis](../../UBERON/15/UBERON_0011215.md) * [part_of](../../BFO/50/BFO_0000050.md) some [limbic system](../../UBERON/49/UBERON_0000349.md) * [part_of](../../BFO/50/BFO_0000050.md) some [olfactory system](../../UBERON/25/UBERON_0005725.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory nerve](../../UBERON/79/UBERON_0001579.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory tubercle](../../UBERON/83/UBERON_0001883.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory tract](../../UBERON/65/UBERON_0002265.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory cortex](../../UBERON/94/UBERON_0002894.md) ## Equivalencies @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013201 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0013501.md b/md/UBERON/01/UBERON_0013501.md index 81b21745b0..9f260559e4 100644 --- a/md/UBERON/01/UBERON_0013501.md +++ b/md/UBERON/01/UBERON_0013501.md @@ -7,11 +7,11 @@ ## Synonyms - * sphincter cloacae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * sphincter cloacae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references - * UMLS:C1516658 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cloacal_Sphincter] + * UMLS:C1516658 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cloacal_Sphincter ] * ncithesaurus:Cloacal_Sphincter ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0013601.md b/md/UBERON/01/UBERON_0013601.md index 911542a900..2920b5cf5c 100644 --- a/md/UBERON/01/UBERON_0013601.md +++ b/md/UBERON/01/UBERON_0013601.md @@ -7,9 +7,9 @@ ## Synonyms - * medial terminal nucleus of the accessory optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:MT] - * mamillothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MT] - * middle temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MT] + * medial terminal nucleus of the accessory optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:MT ] + * mamillothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MT ] + * middle temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MT ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0013701.md b/md/UBERON/01/UBERON_0013701.md index e1aa34e220..136ed1b13b 100644 --- a/md/UBERON/01/UBERON_0013701.md +++ b/md/UBERON/01/UBERON_0013701.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013701 * *Label* = main body axis - * *Definition* = A principle subdivision of an organism that includes all structures along the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A principle subdivision of an organism that includes all structures along the anterior-posterior axis, from head to tail, including structures of the body proper where present (for example, ribs), but excluding appendages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0014401.md b/md/UBERON/01/UBERON_0014401.md index ea2ea93a19..4f5e793dae 100644 --- a/md/UBERON/01/UBERON_0014401.md +++ b/md/UBERON/01/UBERON_0014401.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014401 * *Label* = renal venous blood vessel - * *Definition* = any member of the network of tubes that return blood from the renal tissues to the systemic circulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith] + * *Definition* = any member of the network of tubes that return blood from the renal tissues to the systemic circulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith ] * *Comment* = We follow MA and MP in distinguishing the venous blood vessel from the vein. The kidney cortex vein is not considered a renal vein, nor is the vasa recta ## Synonyms - * kidney venous blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002591] + * kidney venous blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002591 ] * venous blood vessel of kidney ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) and [venous blood vessel](../../UBERON/20/UBERON_0003920.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014401 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0014501.md b/md/UBERON/01/UBERON_0014501.md index c89471fd0b..fdc2e65fe8 100644 --- a/md/UBERON/01/UBERON_0014501.md +++ b/md/UBERON/01/UBERON_0014501.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014501 * *Label* = proximal phalanx of digit 1 - * *Definition* = A proximal phalanx that is part of a autopod digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal phalanx that is part of a autopod digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit 1](../../UBERON/48/UBERON_0006048.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014501 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0014601.md b/md/UBERON/01/UBERON_0014601.md index 487edd5399..5debd0413e 100644 --- a/md/UBERON/01/UBERON_0014601.md +++ b/md/UBERON/01/UBERON_0014601.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1394[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHpm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1394[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus posterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHpm] - * paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHpm] - * paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHpm] + * paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1394, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHpm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1394, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus posterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHpm ] + * paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHpm ] + * paraventricular nucleus of the hypothalamus, magnocellular division, posterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHpm ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014601 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0014701.md b/md/UBERON/01/UBERON_0014701.md index 880cd731ed..5ed1e26a15 100644 --- a/md/UBERON/01/UBERON_0014701.md +++ b/md/UBERON/01/UBERON_0014701.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) and [vascular system](../../UBERON/98/UBERON_0007798.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014701 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0014801.md b/md/UBERON/01/UBERON_0014801.md index 4f7fe2a181..491c48ceb0 100644 --- a/md/UBERON/01/UBERON_0014801.md +++ b/md/UBERON/01/UBERON_0014801.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014801 * *Label* = nuchal line - * *Definition* = The nuchal lines are four curved lines on the external surface of the occipital bone: The upper, often faintly marked, is named the highest nuchal line, and to it the galea aponeurotica is attached. Below the highest nuchal line is the superior nuchal line. To it is attached the Sternocleidomastoid muscle, Occipitalis muscle, and Splenius capitis muscle, and the trapezius muscle. From the external occipital protuberance a ridge or crest, the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchC&. Running from the middle of this line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * *Definition* = The nuchal lines are four curved lines on the external surface of the occipital bone: The upper, often faintly marked, is named the highest nuchal line, and to it the galea aponeurotica is attached. Below the highest nuchal line is the superior nuchal line. To it is attached the Sternocleidomastoid muscle, Occipitalis muscle, and Splenius capitis muscle, and the trapezius muscle. From the external occipital protuberance a ridge or crest, the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchC&. Running from the middle of this line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Synonyms - * inferior nuchal line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] - * inferior nucheal line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] - * linea nuchalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] - * median nuchal line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] - * nuchal line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] - * superior nuchal line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * inferior nuchal line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] + * inferior nucheal line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] + * linea nuchalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] + * median nuchal line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] + * nuchal line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] + * superior nuchal line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014801 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0015001.md b/md/UBERON/01/UBERON_0015001.md index 4eb2583fff..45696b6e22 100644 --- a/md/UBERON/01/UBERON_0015001.md +++ b/md/UBERON/01/UBERON_0015001.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015001 * *Label* = radius endochondral element - * *Definition* = A radius bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A radius bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * radius element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * radius skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * radius element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * radius skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [radius bone](../../UBERON/23/UBERON_0001423.md)or[radius cartilage element](../../UBERON/86/UBERON_0006286.md)or[radius pre-cartilage condensation](../../UBERON/46/UBERON_0010846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_0015101.md b/md/UBERON/01/UBERON_0015101.md index eb52a9684e..2981e10096 100644 --- a/md/UBERON/01/UBERON_0015101.md +++ b/md/UBERON/01/UBERON_0015101.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone endochondral element](../../UBERON/99/UBERON_0015099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015101 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_1000001.md b/md/UBERON/01/UBERON_1000001.md index 7153e46ff0..7e8c8b5400 100644 --- a/md/UBERON/01/UBERON_1000001.md +++ b/md/UBERON/01/UBERON_1000001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000001 * *Label* = collection of hairs on vertex - * *Definition* = A collection of hairs that grows on the vertex (top of head). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A collection of hairs that grows on the vertex (top of head). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000001 + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000001.md b/md/UBERON/01/UBERON_2000001.md index 0e0e3cdbac..53c3647794 100644 --- a/md/UBERON/01/UBERON_2000001.md +++ b/md/UBERON/01/UBERON_2000001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000001 * *Label* = Kupffer's vesicle - * *Definition* = Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000201.md b/md/UBERON/01/UBERON_2000201.md index 2b39182e83..72e543fcb7 100644 --- a/md/UBERON/01/UBERON_2000201.md +++ b/md/UBERON/01/UBERON_2000201.md @@ -6,7 +6,7 @@ ## Synonyms - * transversus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000201] + * transversus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000201 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000401.md b/md/UBERON/01/UBERON_2000401.md index 1a039305ee..3fd3a83364 100644 --- a/md/UBERON/01/UBERON_2000401.md +++ b/md/UBERON/01/UBERON_2000401.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000601.md b/md/UBERON/01/UBERON_2000601.md index b4f1213407..6c75623c7a 100644 --- a/md/UBERON/01/UBERON_2000601.md +++ b/md/UBERON/01/UBERON_2000601.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000701.md b/md/UBERON/01/UBERON_2000701.md index c8b7468654..4d23b9b6e5 100644 --- a/md/UBERON/01/UBERON_2000701.md +++ b/md/UBERON/01/UBERON_2000701.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000801.md b/md/UBERON/01/UBERON_2000801.md index e8a9f504c9..77ba800c23 100644 --- a/md/UBERON/01/UBERON_2000801.md +++ b/md/UBERON/01/UBERON_2000801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000801 * *Label* = myotome somite 11 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2000901.md b/md/UBERON/01/UBERON_2000901.md index db90f73b8e..6dd616f948 100644 --- a/md/UBERON/01/UBERON_2000901.md +++ b/md/UBERON/01/UBERON_2000901.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000901 * *Label* = hypaxial region somite 7 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2001001.md b/md/UBERON/01/UBERON_2001001.md index 35bed4e7f2..e5b6c3431c 100644 --- a/md/UBERON/01/UBERON_2001001.md +++ b/md/UBERON/01/UBERON_2001001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001001 * *Label* = epaxial region somite 13 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2001201.md b/md/UBERON/01/UBERON_2001201.md index 41cb1e96bd..bbef852a63 100644 --- a/md/UBERON/01/UBERON_2001201.md +++ b/md/UBERON/01/UBERON_2001201.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2001701.md b/md/UBERON/01/UBERON_2001701.md index 921d9162a4..a0b98dbec9 100644 --- a/md/UBERON/01/UBERON_2001701.md +++ b/md/UBERON/01/UBERON_2001701.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001701 * *Label* = basibranchial 5 bone - * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 5 element](../../UBERON/19/UBERON_2001919.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2001801.md b/md/UBERON/01/UBERON_2001801.md index cabcf11e8d..7505258fb1 100644 --- a/md/UBERON/01/UBERON_2001801.md +++ b/md/UBERON/01/UBERON_2001801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001801 * *Label* = quadrate-hyomandibula joint - * *Definition* = Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [hyomandibular bone](../../UBERON/06/UBERON_0011606.md) and [core#connects](../../ts/core#connects.md) some [quadrate bone](../../UBERON/97/UBERON_0006597.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2001901.md b/md/UBERON/01/UBERON_2001901.md index 297dc86451..29f2def78e 100644 --- a/md/UBERON/01/UBERON_2001901.md +++ b/md/UBERON/01/UBERON_2001901.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2002001.md b/md/UBERON/01/UBERON_2002001.md index a30c27ff35..a827f7c272 100644 --- a/md/UBERON/01/UBERON_2002001.md +++ b/md/UBERON/01/UBERON_2002001.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002001 * *Label* = anterior dentation of pectoral fin spine - * *Definition* = Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior dentation of pectoral fin spine is usually present on the proximal and/or middle section of the pectoral fin spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior dentation of pectoral fin spine is usually present on the proximal and/or middle section of the pectoral fin spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anterior denticle of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002001] - * anterior serration of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002001] - * anterior thorn of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002001] - * anterior tooth of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002001] - * pectoral fin spine anterior dentation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002001] + * anterior denticle of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002001 ] + * anterior serration of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002001 ] + * anterior thorn of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002001 ] + * anterior tooth of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002001 ] + * pectoral fin spine anterior dentation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002001 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2002101.md b/md/UBERON/01/UBERON_2002101.md index 904b8ba9b3..45c9aa0681 100644 --- a/md/UBERON/01/UBERON_2002101.md +++ b/md/UBERON/01/UBERON_2002101.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002101 * *Label* = branchiostegal ray series - * *Definition* = Anatomical cluster that consists of the branchiostegal rays within an individual. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of the branchiostegal rays within an individual. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * branchiostegals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002101] + * branchiostegals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002101 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2005101.md b/md/UBERON/01/UBERON_2005101.md index 99b898203d..8491cfd1a8 100644 --- a/md/UBERON/01/UBERON_2005101.md +++ b/md/UBERON/01/UBERON_2005101.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005101 * *Label* = interray vessel - * *Definition* = Vessels that travel between veins in adjacent rays. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vessels that travel between veins in adjacent rays. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * interray vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005101[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * interray vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005101, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_2005201.md b/md/UBERON/01/UBERON_2005201.md index aac0a76013..2eade72677 100644 --- a/md/UBERON/01/UBERON_2005201.md +++ b/md/UBERON/01/UBERON_2005201.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral lateral 3 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005201] + * rostral lateral 3 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005201 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_2007001.md b/md/UBERON/01/UBERON_2007001.md index 9e8159dab3..37d2ccc0b2 100644 --- a/md/UBERON/01/UBERON_2007001.md +++ b/md/UBERON/01/UBERON_2007001.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007001 * *Label* = dorso-rostral cluster - * *Definition* = Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsorostral cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007001] - * drc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007001] + * dorsorostral cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007001 ] + * drc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007001 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3000101.md b/md/UBERON/01/UBERON_3000101.md index 947661ad15..50889f36eb 100644 --- a/md/UBERON/01/UBERON_3000101.md +++ b/md/UBERON/01/UBERON_3000101.md @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3000401.md b/md/UBERON/01/UBERON_3000401.md index 3899a28f07..a8f12abfbb 100644 --- a/md/UBERON/01/UBERON_3000401.md +++ b/md/UBERON/01/UBERON_3000401.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3000601.md b/md/UBERON/01/UBERON_3000601.md index 69631e75f4..f859f581ce 100644 --- a/md/UBERON/01/UBERON_3000601.md +++ b/md/UBERON/01/UBERON_3000601.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000601 * *Label* = tectum nasi - * *Definition* = Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * tectum nasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000601] + * tectum nasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000601 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3000701.md b/md/UBERON/01/UBERON_3000701.md index 13400e69f2..96dfb34c62 100644 --- a/md/UBERON/01/UBERON_3000701.md +++ b/md/UBERON/01/UBERON_3000701.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000701 * *Label* = intervertebral space - * *Definition* = Space formed by the anterior and posterior intervertebral notches. The intervertebral spaces accommodate the spinal nerves as they emerge from the spinal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Space formed by the anterior and posterior intervertebral notches. The intervertebral spaces accommodate the spinal nerves as they emerge from the spinal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * intervertebral space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000701] + * intervertebral space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000701 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3000801.md b/md/UBERON/01/UBERON_3000801.md index ab84922c40..5fff17c279 100644 --- a/md/UBERON/01/UBERON_3000801.md +++ b/md/UBERON/01/UBERON_3000801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000801 * *Label* = caput glenoidale - * *Definition* = Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3001001.md b/md/UBERON/01/UBERON_3001001.md index 8343644715..4b152ec1c3 100644 --- a/md/UBERON/01/UBERON_3001001.md +++ b/md/UBERON/01/UBERON_3001001.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0008904 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_3010101.md b/md/UBERON/01/UBERON_3010101.md index 4ab4ddbef2..afe94408c8 100644 --- a/md/UBERON/01/UBERON_3010101.md +++ b/md/UBERON/01/UBERON_3010101.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010101 * *Label* = musculus rectus inferior - * *Definition* = Cranial nerve III innervated; ventral in the rectus group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cranial nerve III innervated; ventral in the rectus group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3010201.md b/md/UBERON/01/UBERON_3010201.md index 0d050ed0cf..7694038aef 100644 --- a/md/UBERON/01/UBERON_3010201.md +++ b/md/UBERON/01/UBERON_3010201.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3010301.md b/md/UBERON/01/UBERON_3010301.md index 7eb61ecee6..70c5b0f29a 100644 --- a/md/UBERON/01/UBERON_3010301.md +++ b/md/UBERON/01/UBERON_3010301.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000018 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_3010501.md b/md/UBERON/01/UBERON_3010501.md index 22f1b97a47..3269f4d22f 100644 --- a/md/UBERON/01/UBERON_3010501.md +++ b/md/UBERON/01/UBERON_3010501.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010501 * *Label* = duodeno-pancreatic artery - * *Definition* = Major branch which supplies blood to pancreas and duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Major branch which supplies blood to pancreas and duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3010701.md b/md/UBERON/01/UBERON_3010701.md index aceb15c3ae..e86b0809b9 100644 --- a/md/UBERON/01/UBERON_3010701.md +++ b/md/UBERON/01/UBERON_3010701.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010701 * *Label* = m. latissimus dorsi - * *Definition* = Muscle which originates from the ventral surface of the dorsal fascia and inserts on the deltoid crest of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the ventral surface of the dorsal fascia and inserts on the deltoid crest of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_3010801.md b/md/UBERON/01/UBERON_3010801.md index 3335ec23f7..acb10066c4 100644 --- a/md/UBERON/01/UBERON_3010801.md +++ b/md/UBERON/01/UBERON_3010801.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010801 * *Label* = ramus lateral - * *Definition* = Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Ventral division of the trunk of the PLLN, this prominent ramus extends over the lateral trunk and caudal musculature innervating the lateral line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_4100001.md b/md/UBERON/01/UBERON_4100001.md index 172960d8dc..e845b0febb 100644 --- a/md/UBERON/01/UBERON_4100001.md +++ b/md/UBERON/01/UBERON_4100001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4100001 * *Label* = obsolete astragalus-calcaneum unit - * *Definition* = Anatomical cluster that is an osteological unit consisting of the astragalus and calcaneum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE: ni] + * *Definition* = Anatomical cluster that is an osteological unit consisting of the astragalus and calcaneum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE: ni ] * *Comment* = TO DO: add astragalus after it has been added. ## Synonyms @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Nizar Ibrahim - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_4200001.md b/md/UBERON/01/UBERON_4200001.md index c13dd6f778..b73eec2df2 100644 --- a/md/UBERON/01/UBERON_4200001.md +++ b/md/UBERON/01/UBERON_4200001.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = phenoscape:ad - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_4200101.md b/md/UBERON/01/UBERON_4200101.md index d7a5109a69..ef1d5267b9 100644 --- a/md/UBERON/01/UBERON_4200101.md +++ b/md/UBERON/01/UBERON_4200101.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/01/UBERON_4300001.md b/md/UBERON/01/UBERON_4300001.md index d57ead456c..4e7c47b680 100644 --- a/md/UBERON/01/UBERON_4300001.md +++ b/md/UBERON/01/UBERON_4300001.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3000652 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/01/UBERON_4400001.md b/md/UBERON/01/UBERON_4400001.md index a4c7596048..3e5c72131e 100644 --- a/md/UBERON/01/UBERON_4400001.md +++ b/md/UBERON/01/UBERON_4400001.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4400001 * *Label* = ceratotrichium - * *Definition* = Elastoidin fin ray that is thickened, generally unbranched and found in the fins of Chondrichthyes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/129] + * *Definition* = Elastoidin fin ray that is thickened, generally unbranched and found in the fins of Chondrichthyes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/129 ] ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0000002.md b/md/UBERON/02/UBERON_0000002.md index 3179d6b525..370008ec60 100644 --- a/md/UBERON/02/UBERON_0000002.md +++ b/md/UBERON/02/UBERON_0000002.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000002 * *Label* = uterine cervix - * *Definition* = Lower, narrow portion of the uterus where it joins with the top end of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervix] + * *Definition* = Lower, narrow portion of the uterus where it joins with the top end of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervix ] ## Synonyms - * canalis cervicis uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17740[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis cervicis uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17740, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * caudal segment of uterus - * cervical canal of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17740] - * cervix uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29927[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neck of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17740] - * uterine cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17740] - * cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0000979] - * cervical canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17740] - * cervix of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001421] + * cervical canal of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17740 ] + * cervix uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29927, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neck of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17740 ] + * uterine cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17740 ] + * cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0000979 ] + * cervical canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17740 ] + * cervix of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001421 ] ## Cross-references @@ -32,7 +32,7 @@ * MESH:A05.360.319.679.256 * OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA * SCTID:245494008 - * UMLS:C0007874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervix] + * UMLS:C0007874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervix ] * VHOG:0001359 * Wikipedia:Cervix * galen:CervixUteri @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [neck of organ](../../UBERON/60/UBERON_0001560.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The evolution of mammals is associated with radical changes in their reproductive biology, particularly the structure and function of the female reproductive organs. These changes include the evolution of the uterus, cervix, vagina, placenta and specialized cell types associated with each of those structures.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cervical * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0000102.md b/md/UBERON/02/UBERON_0000102.md index e50e159511..66c1fe3080 100644 --- a/md/UBERON/02/UBERON_0000102.md +++ b/md/UBERON/02/UBERON_0000102.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000102 * *Label* = lung vasculature - * *Definition* = The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:GO] + * *Definition* = The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:GO ] ## Synonyms - * lung vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pulmonary vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73750] - * vascular network of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasculature of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lung vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pulmonary vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73750 ] + * vascular network of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasculature of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0000202.md b/md/UBERON/02/UBERON_0000202.md index 0bc07d652c..0881a529f3 100644 --- a/md/UBERON/02/UBERON_0000202.md +++ b/md/UBERON/02/UBERON_0000202.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000202 * *Label* = glial blood brain barrier - * *Definition* = A blood brain barrier composed of glial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A blood brain barrier composed of glial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood brain barrier](../../UBERON/20/UBERON_0000120.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [glial cell (sensu Nematoda and Protostomia)](../../CL/24/CL_0000124.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-10T08:42:24Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0000402.md b/md/UBERON/02/UBERON_0000402.md index 15fe72239a..803e5add83 100644 --- a/md/UBERON/02/UBERON_0000402.md +++ b/md/UBERON/02/UBERON_0000402.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000402 * *Label* = nasal vestibule - * *Definition* = The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_vestibule] + * *Definition* = The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_vestibule ] ## Synonyms - * vestibular part of nasal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59644] - * vestibulum nasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001761] - * vestibulum nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001761] - * vestibulum nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_vestibule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vestibular part of nasal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59644 ] + * vestibulum nasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001761 ] + * vestibulum nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001761 ] + * vestibulum nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_vestibule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001002.md b/md/UBERON/02/UBERON_0001002.md index 9aa32ff9ac..47797b7dd2 100644 --- a/md/UBERON/02/UBERON_0001002.md +++ b/md/UBERON/02/UBERON_0001002.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001002 * *Label* = cuticle - * *Definition* = tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuticle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764] + * *Definition* = tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuticle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764 ] * *Comment* = TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part ## Synonyms - * cuticula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001600] + * cuticula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001600 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cuticular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001102.md b/md/UBERON/02/UBERON_0001102.md index 8cf1ce0711..13e7470b55 100644 --- a/md/UBERON/02/UBERON_0001102.md +++ b/md/UBERON/02/UBERON_0001102.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001102 * *Label* = cartilage of main bronchus - * *Definition* = A cartilage that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchus principalis cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous ring of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19092] + * bronchus principalis cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous ring of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19092 ] * main bronchial cartilage * main bronchus cartilage - * primary bronchus cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * primary bronchus cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001202.md b/md/UBERON/02/UBERON_0001202.md index bd37e9ecd2..fbe387eb7b 100644 --- a/md/UBERON/02/UBERON_0001202.md +++ b/md/UBERON/02/UBERON_0001202.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001202 * *Label* = pyloric sphincter - * *Definition* = A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * pyloric valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pylorus] + * pyloric valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pylorus ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002952 * OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA * SCTID:268073008 - * UMLS:C0227238 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pyloric_Sphincter] + * UMLS:C0227238 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pyloric_Sphincter ] * VHOG:0001466 * XAO:0000457 * ncithesaurus:Pyloric_Sphincter @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pylorus](../../UBERON/66/UBERON_0001166.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the adult Xenopus stomach exhibits both glandular and aglandular regions and a distinct pyloric sphincter similar to that of the amniotic vertebrates (...).[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001302.md b/md/UBERON/02/UBERON_0001302.md index b6f5eb7538..a6c21b8696 100644 --- a/md/UBERON/02/UBERON_0001302.md +++ b/md/UBERON/02/UBERON_0001302.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001302 * *Label* = right uterine tube - * *Definition* = A fallopian tube that is part of a right side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fallopian tube that is part of a right side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:18483 * MA:0001717 * SCTID:280106006 - * UMLS:C0227900 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Fallopian_Tube] + * UMLS:C0227900 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Fallopian_Tube ] * ncithesaurus:Right_Fallopian_Tube ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fallopian tube](../../UBERON/89/UBERON_0003889.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001402.md b/md/UBERON/02/UBERON_0001402.md index c382f31291..30f69790f2 100644 --- a/md/UBERON/02/UBERON_0001402.md +++ b/md/UBERON/02/UBERON_0001402.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001402 * *Label* = longissimus cervicis muscle - * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longissimus#Longissimus_cervicis] + * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longissimus#Longissimus_cervicis ] ## Synonyms - * longissimus cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002337] - * musculus longissimus cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001650] + * longissimus cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002337 ] + * musculus longissimus cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001650 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:22711 * MA:0002337 * SCTID:244860008 - * UMLS:C0224308 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longissimus_Cervicis] + * UMLS:C0224308 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longissimus_Cervicis ] * Wikipedia:Longissimus#Longissimus_cervicis * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png * ncithesaurus:Longissimus_Cervicis @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001502.md b/md/UBERON/02/UBERON_0001502.md index eec7465c7e..1c687d0849 100644 --- a/md/UBERON/02/UBERON_0001502.md +++ b/md/UBERON/02/UBERON_0001502.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001502 * *Label* = interosseous muscle of manus - * *Definition* = An interosseous muscle that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interosseous muscle that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand interosseous muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002313] - * interosseous muscle of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37417] + * hand interosseous muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002313 ] + * interosseous muscle of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37417 ] * manus interosseous muscle ## Cross-references @@ -16,7 +16,7 @@ * FMA:37417 * MA:0002313 * SCTID:265804003 - * UMLS:C0224295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Interosseous_Muscle] + * UMLS:C0224295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Interosseous_Muscle ] * ncithesaurus:Hand_Interosseous_Muscle ## Subsets @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interosseous muscle](../../UBERON/08/UBERON_0006508.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The interosseous muscles are flexor muscles of the manus that help support and flex the metacarpophalangeal joints. In some species the muscles are known as the suspensory ligaments. The muscles are found under the deep digital flexor tendon and originate from the base of each metacarpal bone. From its origin each muscle runs a short way down until it divides into two tendons that continue down and insert onto the base of its corresponding proximal phalanx. Each tendon has a sesamoid imbedded within it, that lie over the metacarpophalangeal joint. A small tendon, sometimes known as an extensor branch, continues to proceed from the base of each proximal phalanx and connects to the common extensor tendon. It has a small role to play in the extension of each phalanx. The main innervation of this muscle is via a branch of the ulnaris nerve[MURDOCH:1022]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001602.md b/md/UBERON/02/UBERON_0001602.md index 0d1e150c77..1ba829ffee 100644 --- a/md/UBERON/02/UBERON_0001602.md +++ b/md/UBERON/02/UBERON_0001602.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001602 * *Label* = medial rectus extraocular muscle - * *Definition* = The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_rectus_muscle] + * *Definition* = The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_rectus_muscle ] * *Comment* = Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127] ## Synonyms - * medial rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49037] - * medial rectus extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001281] + * medial rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49037 ] + * medial rectus extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001281 ] * medial rectus muscle - * musculus rectus medialis bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_rectus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus rectus medialis bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_rectus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001281 * SCTID:181151001 * TAO:0000301 - * UMLS:C0582820 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Rectus_Muscle] + * UMLS:C0582820 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Rectus_Muscle ] * VHOG:0001127 * Wikipedia:Medial_rectus_muscle * ZFA:0000301 @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004836 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001702.md b/md/UBERON/02/UBERON_0001702.md index 729ce65b8b..49a7a4fe43 100644 --- a/md/UBERON/02/UBERON_0001702.md +++ b/md/UBERON/02/UBERON_0001702.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001702 * *Label* = eyelash - * *Definition* = An eyelash or simply lash is one of the hairs that grow at the edge of the eyelid. Eyelashes protect the eye from debris and perform some of the same function as whiskers do on a cat or a mouse in the sense that they are sensitive to being touched, thus providing a warning that an object is near the eye (which is then closed reflexively). The greek word for eyelash is 'blepharis'. This word is often used as a root in biological terms [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyelash] + * *Definition* = An eyelash or simply lash is one of the hairs that grow at the edge of the eyelid. Eyelashes protect the eye from debris and perform some of the same function as whiskers do on a cat or a mouse in the sense that they are sensitive to being touched, thus providing a warning that an object is near the eye (which is then closed reflexively). The greek word for eyelash is 'blepharis'. This word is often used as a root in biological terms [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyelash ] ## Synonyms * blepharis - * cilia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyelash[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyelash[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cilia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyelash, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyelash, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hair of eyelid ## Cross-references @@ -20,7 +20,7 @@ * MESH:A01.456.505.420.504.421 * OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA * SCTID:244201001 - * UMLS:C0015422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelash] + * UMLS:C0015422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelash ] * Wikipedia:Eyelash * http://upload.wikimedia.org/wikipedia/commons/9/96/N2_Human_eye.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/N2_Human_eye.jpg/200px-N2_Human_eye.jpg @@ -44,8 +44,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_70742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001802.md b/md/UBERON/02/UBERON_0001802.md index 92642446e2..22b6cab92f 100644 --- a/md/UBERON/02/UBERON_0001802.md +++ b/md/UBERON/02/UBERON_0001802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001802 * *Label* = posterior segment of eyeball - * *Definition* = The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_segment_of_eyeball] + * *Definition* = The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_segment_of_eyeball ] ## Synonyms @@ -12,14 +12,14 @@ * posterior segment of eye * posterior segment of the eye * segmentum posterius (bulbus oculi) - * segmentum posterius bulbi oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_segment_of_eyeball[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * segmentum posterius bulbi oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_segment_of_eyeball, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:58868 * MA:0002485 * SCTID:280659009 - * UMLS:C0278450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Eye_Segment] + * UMLS:C0278450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Eye_Segment ] * Wikipedia:Posterior_segment_of_eyeball * ZFA:0005567 * http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0001902.md b/md/UBERON/02/UBERON_0001902.md index 4252d9ccd9..c4cac1222c 100644 --- a/md/UBERON/02/UBERON_0001902.md +++ b/md/UBERON/02/UBERON_0001902.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001902 * *Label* = epithelium of small intestine - * *Definition* = An epithelium that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mid intestine epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005127] - * small bowel epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mid intestine epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005127 ] + * small bowel epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal epithelium - * small intestine epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestine epithelium ## Cross-references @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Intestinal epithelium which lines the lumen of the mid intestine.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002002.md b/md/UBERON/02/UBERON_0002002.md index 6443e6e268..ba84cd29cf 100644 --- a/md/UBERON/02/UBERON_0002002.md +++ b/md/UBERON/02/UBERON_0002002.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002002 * *Label* = interchondral joint - * *Definition* = Interchondral Articulations (articulations of the cartilages of the ribs with each other). The contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets. Each articulation is enclosed in a thin articular capsule, lined by synovial membrane and strengthened laterally and medially by ligamentous fibers which pass from one cartilage to the other. Sometimes the fifth costal cartilages, more rarely the ninth and tenth, articulate by their lower borders with the adjoining cartilages by small oval facets; more frequently the connection is by a few ligamentous fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interchondral_articulations] + * *Definition* = Interchondral Articulations (articulations of the cartilages of the ribs with each other). The contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets. Each articulation is enclosed in a thin articular capsule, lined by synovial membrane and strengthened laterally and medially by ligamentous fibers which pass from one cartilage to the other. Sometimes the fifth costal cartilages, more rarely the ninth and tenth, articulate by their lower borders with the adjoining cartilages by small oval facets; more frequently the connection is by a few ligamentous fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interchondral_articulations ] * *Comment* = Editor notes: Consider creating logical definition after obo2owl cardinality tests. AO notes: FMA has both synovial and syndesmosis subtypes - consider adding separate class for FMA:7955 Synovial interchondral joint ## Synonyms - * articulatio interchondralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7955] - * articulationes interchondrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71378[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * interchondral articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interchondral_articulations] - * interchondral joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71378] - * interchondral joints set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71378] - * synovial interchondral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7955] - * interchondral joint of 9th and 10th ribs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10425] - * interchondral syndesmosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10425] - * non-synovial interchondral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10425] + * articulatio interchondralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7955 ] + * articulationes interchondrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71378, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * interchondral articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interchondral_articulations ] + * interchondral joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71378 ] + * interchondral joints set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71378 ] + * synovial interchondral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7955 ] + * interchondral joint of 9th and 10th ribs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10425 ] + * interchondral syndesmosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10425 ] + * non-synovial interchondral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10425 ] ## Cross-references @@ -40,11 +40,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002102.md b/md/UBERON/02/UBERON_0002102.md index 0dc4b24d5a..67adbb79aa 100644 --- a/md/UBERON/02/UBERON_0002102.md +++ b/md/UBERON/02/UBERON_0002102.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002102 * *Label* = forelimb - * *Definition* = A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * *Definition* = A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] * *Comment* = AO notes: note that this corresponds to FMA:'free upper limb' (a limb segment), NOT FMA:'upper limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Usage notes: Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm ## Synonyms @@ -11,14 +11,14 @@ * anteriormost limb * fore limb * forelimb - * free part of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24878] - * free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24878[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] - * membrum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7183[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * free part of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24878 ] + * free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24878, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] + * membrum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7183, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pectoral limb * superior member * upper extremity * upper limb - * pectoral flipper [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pectoral flipper [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * foreleg ## Cross-references @@ -40,7 +40,7 @@ * MIAA:0000394 * NIF_GrossAnatomy:UBERON_0002102 * SCTID:182245002 - * UMLS:C1140618 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Extremity] + * UMLS:C1140618 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Extremity ] * VHOG:0000338 * VSAO:0000148 * Wikipedia:Forelimb @@ -65,7 +65,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limb](../../UBERON/01/UBERON_0002101.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Upper limb, which connects the manus with the pectoral girdle.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002202.md b/md/UBERON/02/UBERON_0002202.md index 478e430545..4db46a3312 100644 --- a/md/UBERON/02/UBERON_0002202.md +++ b/md/UBERON/02/UBERON_0002202.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002202 * *Label* = submucosa of trachea - * *Definition* = A submucosa that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * submucosa of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * submucosa of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trachea submucosa * tracheal submucosa - * windpipe submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucous layer of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002115] + * windpipe submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucous layer of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002115 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:7472 * MA:0001860 * SCTID:4419000 - * UMLS:C0225586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Submucosa] + * UMLS:C0225586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Submucosa ] * ncithesaurus:Trachea_Submucosa ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002302.md b/md/UBERON/02/UBERON_0002302.md index 1aa0a863d1..98c7ff1de1 100644 --- a/md/UBERON/02/UBERON_0002302.md +++ b/md/UBERON/02/UBERON_0002302.md @@ -3,54 +3,54 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002302 * *Label* = myocardium of atrium - * *Definition* = A myocardium that is part of a cardiac atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A myocardium that is part of a cardiac atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Cardiac atria cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Cardiac atria heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Cardiac atria heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Cardiac atria muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Cardiac atria myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Cardiac atria cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Cardiac atria heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Cardiac atria heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Cardiac atria muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Cardiac atria myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * atrial myocardium * atrium myocardium - * atrium of heart cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium of heart heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium of heart heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium of heart muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000602] + * atrium of heart cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium of heart heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium of heart heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium of heart muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000602 ] ## Cross-references @@ -75,7 +75,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium](../../UBERON/49/UBERON_0002349.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) ## Other Logical Axioms @@ -84,8 +84,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002402.md b/md/UBERON/02/UBERON_0002402.md index 640fb8adc9..610da0bdaf 100644 --- a/md/UBERON/02/UBERON_0002402.md +++ b/md/UBERON/02/UBERON_0002402.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002402 * *Label* = pleural cavity - * *Definition* = Cavity of serous sac surropunded by the pleura.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pleural_cavity] + * *Definition* = Cavity of serous sac surropunded by the pleura.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pleural_cavity ] * *Comment* = Note the EHDAA2 class is not quite equivalent. See http://purl.obolibrary.org/obo/uberon/tracker/86 ## Synonyms - * cavitas pleurallis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pleural_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavitas pleurallis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pleural_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A01.911.800.650 * OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA * SCTID:361999006 - * UMLS:C0178802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pleural_Cavity] + * UMLS:C0178802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pleural_Cavity ] * VHOG:0000581 * Wikipedia:Pleural_cavity * http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pleural sac](../../UBERON/78/UBERON_0009778.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002502.md b/md/UBERON/02/UBERON_0002502.md index 201f328916..427c2bf70f 100644 --- a/md/UBERON/02/UBERON_0002502.md +++ b/md/UBERON/02/UBERON_0002502.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002502 * *Label* = round window of inner ear - * *Definition* = The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_window] + * *Definition* = The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_window ] ## Synonyms - * round window [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002814] + * round window [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002814 ] * round window of petrous part of temporal bone - * cochlear window [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002814] - * fenestra cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_window[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fenestra rotunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_window[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cochlear window [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002814 ] + * fenestra cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_window, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fenestra rotunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_window, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002602.md b/md/UBERON/02/UBERON_0002602.md index 4131e0bfd6..74aa498f17 100644 --- a/md/UBERON/02/UBERON_0002602.md +++ b/md/UBERON/02/UBERON_0002602.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002602 * *Label* = emboliform nucleus - * *Definition* = The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Emboliform_nucleus] + * *Definition* = The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Emboliform_nucleus ] ## Synonyms - * anterior interposed nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72538] - * anterior interpositus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72538] - * nucleus interpositus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72538[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus emboliformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Emboliform_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus emboliformis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:688[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interpositus anterior cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:688[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior interposed nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72538 ] + * anterior interpositus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72538 ] + * nucleus interpositus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72538, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus emboliformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Emboliform_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus emboliformis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:688, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interpositus anterior cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:688, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,8 +20,8 @@ * BAMS:Emb * FMA:72538 * NIF_GrossAnatomy:birnlex_1135 - * NeuroNames:688 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1135] - * UMLS:C0175488 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1135] + * NeuroNames:688 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1135 ] + * UMLS:C0175488 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1135 ] * Wikipedia:Emboliform_nucleus * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002702.md b/md/UBERON/02/UBERON_0002702.md index 2442ee9700..f4182d4e2f 100644 --- a/md/UBERON/02/UBERON_0002702.md +++ b/md/UBERON/02/UBERON_0002702.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002702 * *Label* = middle frontal gyrus - * *Definition* = The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_frontal_gyrus] + * *Definition* = The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_frontal_gyrus ] ## Synonyms - * gyrus frontalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61859[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * intermediate frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61859] - * medial frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61859] - * gyrus F2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:84[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis medialis (Winters) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:84[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_frontal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis secundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:84[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial frontal gyrus (Mai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:84] - * middle (medial) frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MFG] + * gyrus frontalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61859, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * intermediate frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61859 ] + * medial frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61859 ] + * gyrus F2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:84, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis medialis (Winters) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:84, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_frontal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis secundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:84, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial frontal gyrus (Mai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:84 ] + * middle (medial) frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MFG ] ## Cross-references @@ -23,9 +23,9 @@ * BTO:0004834 * FMA:61859 * NIF_GrossAnatomy:birnlex_1451 - * NeuroNames:84 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1451] + * NeuroNames:84 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1451 ] * SCTID:362332009 - * UMLS:C0152297 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1451] + * UMLS:C0152297 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1451 ] * Wikipedia:Middle_frontal_gyrus * http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Middle_frontal_gyrus.png/200px-Middle_frontal_gyrus.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002802.md b/md/UBERON/02/UBERON_0002802.md index 6d9058d726..f3a9b7519a 100644 --- a/md/UBERON/02/UBERON_0002802.md +++ b/md/UBERON/02/UBERON_0002802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002802 * *Label* = left parietal lobe - * *Definition* = A parietal lobe that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parietal lobe that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:72974 * NIF_GrossAnatomy:birnlex_1728 * SCTID:314147009 - * UMLS:C1281960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1728] + * UMLS:C1281960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1728 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parietal lobe](../../UBERON/72/UBERON_0001872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0002902.md b/md/UBERON/02/UBERON_0002902.md index 36b43cd3a1..34e1b094bb 100644 --- a/md/UBERON/02/UBERON_0002902.md +++ b/md/UBERON/02/UBERON_0002902.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002902 * *Label* = occipital pole - * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_pole] + * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_pole ] ## Synonyms - * polus occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4016[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ocp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4016[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * polus occipitalis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001868] + * polus occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4016, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ocp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4016, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * polus occipitalis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001868 ] ## Cross-references @@ -19,9 +19,9 @@ * BTO:0001868 * FMA:74892 * NIF_GrossAnatomy:birnlex_4016 - * NeuroNames:141 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4016] + * NeuroNames:141 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4016 ] * SCTID:314160003 - * UMLS:C0228217 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4016] + * UMLS:C0228217 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4016 ] * Wikipedia:Occipital_pole * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [occipital lobe](../../UBERON/21/UBERON_0002021.md) and [pole of cerebral hemisphere](../../UBERON/99/UBERON_0009899.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003002.md b/md/UBERON/02/UBERON_0003002.md index c153fe129a..64dcfc309c 100644 --- a/md/UBERON/02/UBERON_0003002.md +++ b/md/UBERON/02/UBERON_0003002.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003002 * *Label* = medial lemniscus - * *Definition* = The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_lemniscus] + * *Definition* = The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_lemniscus ] ## Synonyms - * lemniscus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_lemniscus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lemniscus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_lemniscus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003102.md b/md/UBERON/02/UBERON_0003102.md index cd0bc35aa2..6d61acd8a2 100644 --- a/md/UBERON/02/UBERON_0003102.md +++ b/md/UBERON/02/UBERON_0003102.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003102 * *Label* = surface structure - * *Definition* = Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/24] + * *Definition* = Anatomical structure that overlaps the outer epithelial layer and is adjacent to the space surrounding the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/24 ] ## Synonyms - * anatomical surface feature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003010] + * anatomical surface feature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003010 ] * surface feature * surface region @@ -31,12 +31,12 @@ * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) * [part_of](../../BFO/50/BFO_0000050.md) some [external covering of organism](../../UBERON/29/UBERON_0007029.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [outer epithelial layer](../../UBERON/76/UBERON_0007376.md) * [adjacent to](../../RO/20/RO_0002220.md) some [space surrounding organism](../../UBERON/14/UBERON_0013514.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [space surrounding organism](../../UBERON/14/UBERON_0013514.md) and [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [external covering of organism](../../UBERON/29/UBERON_0007029.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision which is the collection of anatomical structures on the body surface.[ZFA] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003202.md b/md/UBERON/02/UBERON_0003202.md index 9de4728e18..64a7af4386 100644 --- a/md/UBERON/02/UBERON_0003202.md +++ b/md/UBERON/02/UBERON_0003202.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003202 * *Label* = endocuticle - * *Definition* = The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001603] + * *Definition* = The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001603 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003302.md b/md/UBERON/02/UBERON_0003302.md index b328d3452b..833ed01ebc 100644 --- a/md/UBERON/02/UBERON_0003302.md +++ b/md/UBERON/02/UBERON_0003302.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003302 * *Label* = roof plate of metencephalon - * *Definition* = A roof plate that is part of a metencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a metencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epencephalon-2 roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epencephalon-2 roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metencephalon roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metencephalon roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000770] - * roof plate of epencephalon-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of epencephalon-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate medulla metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000770] + * epencephalon-2 roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epencephalon-2 roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metencephalon roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metencephalon roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000770 ] + * roof plate of epencephalon-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of epencephalon-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate medulla metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000770 ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metencephalon](../../UBERON/95/UBERON_0001895.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the metencephalon. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003502.md b/md/UBERON/02/UBERON_0003502.md index 8002ece834..0d6926a174 100644 --- a/md/UBERON/02/UBERON_0003502.md +++ b/md/UBERON/02/UBERON_0003502.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003502 * *Label* = neck blood vessel - * *Definition* = A blood vessel that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003702.md b/md/UBERON/02/UBERON_0003702.md index e7984b763b..a4b97b84a5 100644 --- a/md/UBERON/02/UBERON_0003702.md +++ b/md/UBERON/02/UBERON_0003702.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003702 * *Label* = inguinal canal - * *Definition* = The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord + the ilioinguinal nerve and in women the round ligament + the ilioinguinal nerve. The inguinal canal is larger and more prominent in men. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_canal] + * *Definition* = The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord + the ilioinguinal nerve and in women the round ligament + the ilioinguinal nerve. The inguinal canal is larger and more prominent in men. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_canal ] ## Synonyms - * canalis inguinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis inguinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,7 +15,7 @@ * GAID:28 * MESH:A01.047.412 * SCTID:243966008 - * UMLS:C0021445 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inguinal_Canal] + * UMLS:C0021445 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inguinal_Canal ] * Wikipedia:Inguinal_canal * http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray1227.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray1227.png/200px-Gray1227.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0003902.md b/md/UBERON/02/UBERON_0003902.md index fee47c3ba6..e9b2768f43 100644 --- a/md/UBERON/02/UBERON_0003902.md +++ b/md/UBERON/02/UBERON_0003902.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003902 * *Label* = retinal neural layer - * *Definition* = The part of the retina that contains neurons and photoreceptor cells[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003407] + * *Definition* = The part of the retina that contains neurons and photoreceptor cells[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003407 ] * *Comment* = editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node. ## Synonyms - * neural layer of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58628] - * neural retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003216[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000046] - * neuroretina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000046] - * stratum nervosum (retina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58628] - * neural retinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:000027] + * neural layer of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58628 ] + * neural retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003216, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000046 ] + * neuroretina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000046 ] + * stratum nervosum (retina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58628 ] + * neural retinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:000027 ] ## Cross-references @@ -26,7 +26,7 @@ * FMA:58628 * MA:0000277 * TAO:0000046 - * UMLS:C1518263 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Retina] + * UMLS:C1518263 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Retina ] * VHOG:0000535 * XAO:0003216 * ZFA:0000046 @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [presumptive neural retina](../../UBERON/25/UBERON_0005425.md) and [layer of retina](../../UBERON/81/UBERON_0001781.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004002.md b/md/UBERON/02/UBERON_0004002.md index 67e6bd9460..4d31e88349 100644 --- a/md/UBERON/02/UBERON_0004002.md +++ b/md/UBERON/02/UBERON_0004002.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004002 * *Label* = posterior lobe of cerebellum - * *Definition* = the region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009962] + * *Definition* = the region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009962 ] ## Synonyms * cerebellar posterior lobe * cerebellum posterior lobe - * middle lobe-1 of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72252] - * posterior cerebellar lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72252] + * middle lobe-1 of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72252 ] + * posterior cerebellar lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72252 ] * posterior lobe of cerebellum - * posterior lobe of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_911] - * posterior lobe-1 of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72252] - * cerebrocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72252] + * posterior lobe of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_911 ] + * posterior lobe-1 of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72252 ] + * cerebrocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72252 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004202.md b/md/UBERON/02/UBERON_0004202.md index ac999933d5..3afd0acc66 100644 --- a/md/UBERON/02/UBERON_0004202.md +++ b/md/UBERON/02/UBERON_0004202.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004202 * *Label* = kidney outer medulla outer stripe - * *Definition* = The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072058] + * *Definition* = The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072058 ] ## Synonyms - * outer medulla outer stripe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002629] - * outer stripe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072058] - * outer stripe of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76662] - * outer stripe of outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29663] - * outer stripe of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76662] - * stria externa medullae renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76662[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * outer medulla outer stripe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002629 ] + * outer stripe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072058 ] + * outer stripe of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76662 ] + * outer stripe of outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29663 ] + * outer stripe of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76662 ] + * stria externa medullae renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76662, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004302.md b/md/UBERON/02/UBERON_0004302.md index ece965dc44..5748b6ca67 100644 --- a/md/UBERON/02/UBERON_0004302.md +++ b/md/UBERON/02/UBERON_0004302.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004302 * *Label* = proximal phalanx - * *Definition* = Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proximal_phalanges] + * *Definition* = Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proximal_phalanges ] ## Synonyms * phalanx 1 * phalanx I - * proximal-most phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010680] + * proximal-most phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010680 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [metapodium bone](../../UBERON/21/UBERON_0003821.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[phalanx number](../../UBPROP/05/UBPROP_0000105.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004402.md b/md/UBERON/02/UBERON_0004402.md index af106eb93f..9c61481e48 100644 --- a/md/UBERON/02/UBERON_0004402.md +++ b/md/UBERON/02/UBERON_0004402.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004402 * *Label* = bone tissue of proximal epiphysis - * *Definition* = A portion of bone tissue that is part of a proximal epiphysis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of bone tissue that is part of a proximal epiphysis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004502.md b/md/UBERON/02/UBERON_0004502.md index 61164cc356..1f615202b5 100644 --- a/md/UBERON/02/UBERON_0004502.md +++ b/md/UBERON/02/UBERON_0004502.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004502 * *Label* = skeletal muscle tissue of biceps brachii - * *Definition* = A portion of skeletal muscle tissue that is part of a biceps brachii [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a biceps brachii [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [biceps brachii](../../UBERON/07/UBERON_0001507.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004602.md b/md/UBERON/02/UBERON_0004602.md index 9cae9c6d94..85ba44afab 100644 --- a/md/UBERON/02/UBERON_0004602.md +++ b/md/UBERON/02/UBERON_0004602.md @@ -3,21 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004602 * *Label* = rib 2 - * *Definition* = The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Second_rib] + * *Definition* = The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Second_rib ] * *Comment* = elements are to be defined spatially/topologically ## Synonyms - * Costa secunda (II) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7620] - * second rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7620] - * costa secunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Second_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * costa II [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * costa secunda (II) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7620 ] + * second rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7620 ] + * costa secunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Second_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7620 * MA:0001402 * SCTID:244656007 - * UMLS:C1709949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_2] + * UMLS:C1709949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_2 ] * Wikipedia:Second_rib * http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray125.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray125.png/200px-Gray125.png @@ -40,8 +41,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004702.md b/md/UBERON/02/UBERON_0004702.md index 052ba676c4..feb904e16d 100644 --- a/md/UBERON/02/UBERON_0004702.md +++ b/md/UBERON/02/UBERON_0004702.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004702 * *Label* = respiratory system blood vessel endothelium - * *Definition* = A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel endothelium that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel endothelium](../../UBERON/38/UBERON_0004638.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004802.md b/md/UBERON/02/UBERON_0004802.md index 18a45c41a3..4a41bc2e74 100644 --- a/md/UBERON/02/UBERON_0004802.md +++ b/md/UBERON/02/UBERON_0004802.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004802 * *Label* = respiratory tract epithelium - * *Definition* = An epithelium that is part of a respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory tract epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * airway epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000419] - * respiratory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000419] + * epithelial tissue of respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory tract epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * airway epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000419 ] + * respiratory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000419 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory tract](../../UBERON/65/UBERON_0000065.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0004902.md b/md/UBERON/02/UBERON_0004902.md index c5f0a628bd..8b99f36a92 100644 --- a/md/UBERON/02/UBERON_0004902.md +++ b/md/UBERON/02/UBERON_0004902.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004902 * *Label* = urogenital sinus epithelium - * *Definition* = The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * *Definition* = The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] * *Comment* = we follow EHDAA2 in dividing the UGS into epithelium and lumen ## Synonyms - * UGE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] - * epithelium of urogenital sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * UGE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] + * epithelium of urogenital sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [primitive urogenital sinus](../../UBERON/64/UBERON_0000164.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005002.md b/md/UBERON/02/UBERON_0005002.md index 8001544ac6..3b9d41bb13 100644 --- a/md/UBERON/02/UBERON_0005002.md +++ b/md/UBERON/02/UBERON_0005002.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005002 * *Label* = mucosa of right hepatic duct - * *Definition* = A mucosa that is part of a right hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a right hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of right hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14692] + * mucosa of organ of right hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14692 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right hepatic duct](../../UBERON/76/UBERON_0001176.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005102.md b/md/UBERON/02/UBERON_0005102.md index d88f358a29..a83a20dcc4 100644 --- a/md/UBERON/02/UBERON_0005102.md +++ b/md/UBERON/02/UBERON_0005102.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005102 * *Label* = late distal convoluted tubule - * *Definition* = The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072068] + * *Definition* = The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072068 ] * *Comment* = TODO - CL ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005202.md b/md/UBERON/02/UBERON_0005202.md index 00524ba9d1..d78b6fa643 100644 --- a/md/UBERON/02/UBERON_0005202.md +++ b/md/UBERON/02/UBERON_0005202.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005202 * *Label* = distal straight tubule macula densa - * *Definition* = A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A macula densa that is part of an ascending limb of loop of Henle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - unify terminology - check DST = TAL? Note EMAPA class appears to refer to this segment ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula densa](../../UBERON/35/UBERON_0002335.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thick ascending limb of loop of Henle](../../UBERON/91/UBERON_0001291.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005302.md b/md/UBERON/02/UBERON_0005302.md index ada4ceb144..d46bb705ea 100644 --- a/md/UBERON/02/UBERON_0005302.md +++ b/md/UBERON/02/UBERON_0005302.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005302 * *Label* = female preputial gland - * *Definition* = The paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attractivity; unlike other sebaceous glands, they undergo progressive atrophy of the glandular portion with marked ductal ectasia as rodents age; there is no true anatomical equivalent in humans[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011834[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3588536&group_id=76834&atid=1109502] + * *Definition* = The paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attractivity; unlike other sebaceous glands, they undergo progressive atrophy of the glandular portion with marked ductal ectasia as rodents age; there is no true anatomical equivalent in humans[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011834, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3588536&group_id=76834&atid=1109502 ] ## Synonyms - * clitoral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001702] - * preputial gland of female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30499] + * clitoral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001702 ] + * preputial gland of female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30499 ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:30711 * MA:0001702 * MA:0001703 - * UMLS:C2699356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Clitoral_Gland] + * UMLS:C2699356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Clitoral_Gland ] * ncithesaurus:Clitoral_Gland ## Subsets @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [preputial gland](../../UBERON/59/UBERON_0000359.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = large, lobulated, modified sebaceous glands located on the side of the clitoris in female mice; little is known about their function and, unlike other sebaceous glands, they undergo progressive atrophy of the glandular portion with marked ductal ectasia as mice age; there is no equivalent gland in humans. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005402.md b/md/UBERON/02/UBERON_0005402.md index 6de0e0a03f..0f7c33d587 100644 --- a/md/UBERON/02/UBERON_0005402.md +++ b/md/UBERON/02/UBERON_0005402.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005402 * *Label* = philtrum - * *Definition* = medial cleft extending from the nose to the upper lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Philtrum] + * *Definition* = medial cleft extending from the nose to the upper lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Philtrum ] * *Comment* = Taxon notes: vestigial in humans. In humans, the philtrum is formed where the nasomedial and maxillary processes meet during embryonic development (colloquially known as Hulse lines). When these processes fail to fuse fully in humans, a cleft lip (sometimes called a 'hare lip') can result. A flattened or smooth philtrum can be a symptom of fetal alcohol syndrome or Prader-Willi syndrome ## Synonyms - * lip philtrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001577] - * infranasal depression [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Philtrum] - * medial cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Philtrum] + * lip philtrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001577 ] + * infranasal depression [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Philtrum ] + * medial cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Philtrum ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005502.md b/md/UBERON/02/UBERON_0005502.md index a0912ecbf4..cb9d156cd0 100644 --- a/md/UBERON/02/UBERON_0005502.md +++ b/md/UBERON/02/UBERON_0005502.md @@ -6,9 +6,9 @@ ## Synonyms - * roof plate rhombomere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001311] - * roof plate rhombomere region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001311] - * roof plate rhombomeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001018] + * roof plate rhombomere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001311 ] + * roof plate rhombomere region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001311 ] + * roof plate rhombomeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001018 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005602.md b/md/UBERON/02/UBERON_0005602.md index 4cb51a3c9b..f7a3fe7bd0 100644 --- a/md/UBERON/02/UBERON_0005602.md +++ b/md/UBERON/02/UBERON_0005602.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005602 * *Label* = dorsal mesogastrium - * *Definition* = The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_mesentery] + * *Definition* = The portion of mesentery attached to the greater curvature of the stomach is named the dorsal mesentery (or dorsal mesogastrium, when referring to the portion at the stomach), and the part which suspends the colon is termed the mesocolon. The dorsal mesogastrium develops into the greater omentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_mesentery ] ## Synonyms - * dorsal mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_mesentery] + * dorsal mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_mesentery ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:17025 * EMAPA:18903 * MA:0001618 - * UMLS:C1512038 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Mesogastrium] + * UMLS:C1512038 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Mesogastrium ] * VHOG:0000352 * Wikipedia:Dorsal_mesentery * ncithesaurus:Dorsal_Mesogastrium @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dorsal sheet of the primitive mesentery that encloses the stomach. The greater omentum develops from the dorsal mesogastrium. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005702.md b/md/UBERON/02/UBERON_0005702.md index ca5901a706..20c0c55e40 100644 --- a/md/UBERON/02/UBERON_0005702.md +++ b/md/UBERON/02/UBERON_0005702.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005702 * *Label* = optic eminence mesenchyme - * *Definition* = Mesenchyme that is part of a optic eminence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a optic eminence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [optic eminence](../../UBERON/48/UBERON_0004348.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0005902.md b/md/UBERON/02/UBERON_0005902.md index b49346421f..c49fdf6f99 100644 --- a/md/UBERON/02/UBERON_0005902.md +++ b/md/UBERON/02/UBERON_0005902.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005902 * *Label* = occipital region - * *Definition* = Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001414[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000007] + * *Definition* = Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001414, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000007 ] * *Comment* = TODO - check ## Synonyms - * basicranial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001414] - * occipital part of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49187] - * occipital region of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49187] - * back of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49187] + * basicranial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001414 ] + * occipital part of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49187 ] + * occipital region of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49187 ] + * back of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49187 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An anatomical cluster that is located in the posterior region of the neurocranium and forms the margin of the foramen margin and occipital condyles.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occiptal condyle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0006002.md b/md/UBERON/02/UBERON_0006002.md index 717253ef76..5934984d51 100644 --- a/md/UBERON/02/UBERON_0006002.md +++ b/md/UBERON/02/UBERON_0006002.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006002 * *Label* = vitelline artery - * *Definition* = the paired arteries that carry blood to the yolk sac / gut tube from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010664[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_arteries] + * *Definition* = the paired arteries that carry blood to the yolk sac / gut tube from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010664, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_arteries ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [dorsal aorta](../../UBERON/05/UBERON_0005805.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0006102.md b/md/UBERON/02/UBERON_0006102.md index f759a58a8f..0b566a241a 100644 --- a/md/UBERON/02/UBERON_0006102.md +++ b/md/UBERON/02/UBERON_0006102.md @@ -6,18 +6,18 @@ ## Synonyms - * B09-35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * BA35 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * Brodmann area 35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * Brodmann area 35, perirhinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * Brodmann's area 35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68632] - * Brodmann.35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * area 35 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68632] - * area 35 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * area perirhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1768] - * perirhinal area 35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68632] - * B09-35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1768[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * BA35 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * Brodmann area 35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * Brodmann area 35, perirhinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * Brodmann's area 35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68632 ] + * Brodmann.35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * area 35 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68632 ] + * area 35 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * area perirhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1768 ] + * perirhinal area 35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68632 ] + * B09-35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1768, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:68632 * NIF_GrossAnatomy:birnlex_1768 * SCTID:384790006 - * UMLS:C1272496 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1768] + * UMLS:C1272496 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1768 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0006202.md b/md/UBERON/02/UBERON_0006202.md index 57d6df41fe..ce5c14f529 100644 --- a/md/UBERON/02/UBERON_0006202.md +++ b/md/UBERON/02/UBERON_0006202.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = MA:0002260 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006202 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_0006502.md b/md/UBERON/02/UBERON_0006502.md index 6159c11484..55d37a6578 100644 --- a/md/UBERON/02/UBERON_0006502.md +++ b/md/UBERON/02/UBERON_0006502.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006502 * *Label* = plantar foot interosseous muscle - * *Definition* = The plantar interossei, three in number, lie beneath rather than between the metatarsal bones, and each is connected with but one metatarsal bone. They arise from the bases and medial sides of the bodies of the third, fourth, and fifth metatarsal bones, and are inserted into the medial sides of the bases of the first phalanges of the same toes, and into the aponeuroses of the tendons of the Extensor digitorum longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plantar_interossei_muscles] + * *Definition* = The plantar interossei, three in number, lie beneath rather than between the metatarsal bones, and each is connected with but one metatarsal bone. They arise from the bases and medial sides of the bodies of the third, fourth, and fifth metatarsal bones, and are inserted into the medial sides of the bases of the first phalanges of the same toes, and into the aponeuroses of the tendons of the Extensor digitorum longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plantar_interossei_muscles ] ## Synonyms * musculi interossei plantares - * plantar interosseous of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37458] - * musculi interosseus plantaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plantar_interossei_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plantar interosseous of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37458 ] + * musculi interosseus plantaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plantar_interossei_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:37458 * MA:0002304 - * UMLS:C1744540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Plantar_Foot_Interosseus_Muscle] + * UMLS:C1744540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Plantar_Foot_Interosseus_Muscle ] * Wikipedia:Plantar_interossei_muscles * http://upload.wikimedia.org/wikipedia/commons/2/21/Gray447.png * ncithesaurus:Plantar_Foot_Interosseus_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0006802.md b/md/UBERON/02/UBERON_0006802.md index 4140382160..ff89ec2b8c 100644 --- a/md/UBERON/02/UBERON_0006802.md +++ b/md/UBERON/02/UBERON_0006802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006802 * *Label* = acetabular rim - * *Definition* = A prominent unever rim that bounds the acetabulum, serving as the attachment for the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Acetabulum#Structure] + * *Definition* = A prominent unever rim that bounds the acetabulum, serving as the attachment for the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Acetabulum#Structure ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0007302.md b/md/UBERON/02/UBERON_0007302.md index 461b58a53e..552b3542c3 100644 --- a/md/UBERON/02/UBERON_0007302.md +++ b/md/UBERON/02/UBERON_0007302.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007302 * *Label* = pectoral appendage vasculature - * *Definition* = A vasculature that is part of a pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pectoral fin vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005096[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pectoral fin vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005096, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0007502.md b/md/UBERON/02/UBERON_0007502.md index cd94e42de9..f02a854d4f 100644 --- a/md/UBERON/02/UBERON_0007502.md +++ b/md/UBERON/02/UBERON_0007502.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007502 * *Label* = epithelial plexus - * *Definition* = A complex of interlinking epithelial tubules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A complex of interlinking epithelial tubules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003118 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0007602.md b/md/UBERON/02/UBERON_0007602.md index bc583471ef..22cf390f0c 100644 --- a/md/UBERON/02/UBERON_0007602.md +++ b/md/UBERON/02/UBERON_0007602.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007602 * *Label* = stratified columnar epithelium - * *Definition* = Stratified columnar epithelia is a rare type of epithelial tissue composed of column shaped cells arranged in multiple layers. Stratified columnar epithelia are found in the ocular conjunctiva of the eye, in parts of the pharynx and anus, the female's uterus, the male urethra and vas deferens. Also found in intralobular ducts in salivary glands.[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_columnar_epithelia] + * *Definition* = Stratified columnar epithelia is a rare type of epithelial tissue composed of column shaped cells arranged in multiple layers. Stratified columnar epithelia are found in the ocular conjunctiva of the eye, in parts of the pharynx and anus, the female's uterus, the male urethra and vas deferens. Also found in intralobular ducts in salivary glands.[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_columnar_epithelia ] ## Synonyms - * epithelium stratificatum columnare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45564] + * epithelium stratificatum columnare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45564 ] ## Cross-references * FMA:45564 - * UMLS:C0836132 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratified_Columnar_Epithelium] + * UMLS:C0836132 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratified_Columnar_Epithelium ] * Wikipedia:Stratified_columnar_epithelia * ncithesaurus:Stratified_Columnar_Epithelium @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0007702.md b/md/UBERON/02/UBERON_0007702.md index 65ee656ebf..5c07a81d33 100644 --- a/md/UBERON/02/UBERON_0007702.md +++ b/md/UBERON/02/UBERON_0007702.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007702 * *Label* = tract of brain - * *Definition* = An axon tract that is part of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An axon tract that is part of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: the NIFSTD class 'nerve tract' is classified under 'regional part of brain', so it may seem like it belongs here, but actually includes spinal cord tracts ## Synonyms - * brain tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83848] + * brain tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83848 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [axon tract](../../UBERON/18/UBERON_0001018.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0007802.md b/md/UBERON/02/UBERON_0007802.md index b673c12204..b3b8a2e1e9 100644 --- a/md/UBERON/02/UBERON_0007802.md +++ b/md/UBERON/02/UBERON_0007802.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007802 * *Label* = uropygial gland - * *Definition* = A large gland at the base of a bird's tail dorsal to the cloaca at the end of the pygostyle that secretes an oil used in preening. It opens through a caudally directed nipple. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001420[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uropygial_gland[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikivet.net] + * *Definition* = A large gland at the base of a bird's tail dorsal to the cloaca at the end of the pygostyle that secretes an oil used in preening. It opens through a caudally directed nipple. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001420, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uropygial_gland, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikivet.net ] * *Comment* = The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath ## Synonyms - * oil gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001420] + * oil gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001420 ] * preen gland * preen oil gland @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [produces](../../RO/00/RO_0003000.md) some [preen oil](../../UBERON/03/UBERON_0007803.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0008202.md b/md/UBERON/02/UBERON_0008202.md index 81fccf3bbb..1332afd908 100644 --- a/md/UBERON/02/UBERON_0008202.md +++ b/md/UBERON/02/UBERON_0008202.md @@ -19,7 +19,7 @@ ## Superclasses * [bone element](../../UBERON/74/UBERON_0001474.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Equivalencies @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0008802.md b/md/UBERON/02/UBERON_0008802.md index 6bbfcca2bf..f154c1c743 100644 --- a/md/UBERON/02/UBERON_0008802.md +++ b/md/UBERON/02/UBERON_0008802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008802 * *Label* = cheek pouch - * *Definition* = A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002224] + * *Definition* = A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002224 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0008902.md b/md/UBERON/02/UBERON_0008902.md index 5e403274bc..04dff15d08 100644 --- a/md/UBERON/02/UBERON_0008902.md +++ b/md/UBERON/02/UBERON_0008902.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008902 * *Label* = lateral recess of third vetricle - * *Definition* = Lateral protrusion of the third ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lateral protrusion of the third ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lateral recess of diencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-091221-27] - * lateral recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000231[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral recess of diencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-091221-27 ] + * lateral recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000231, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0009002.md b/md/UBERON/02/UBERON_0009002.md index d516ed7e99..46f443e197 100644 --- a/md/UBERON/02/UBERON_0009002.md +++ b/md/UBERON/02/UBERON_0009002.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009002 * *Label* = placental membrane - * *Definition* = The membrane separating the fetal from the maternal blood in the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004196] + * *Definition* = The membrane separating the fetal from the maternal blood in the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004196 ] ## Synonyms - * placental barrier [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004196] + * placental barrier [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004196 ] ## Cross-references * BTO:0004196 * SCTID:256591004 - * UMLS:C0230984 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Placental_Membrane] + * UMLS:C0230984 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Placental_Membrane ] * ncithesaurus:Placental_Membrane ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0009102.md b/md/UBERON/02/UBERON_0009102.md index 701dec327e..e52e61e7bc 100644 --- a/md/UBERON/02/UBERON_0009102.md +++ b/md/UBERON/02/UBERON_0009102.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009102 * *Label* = supraneural body - * *Definition* = One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge [1315]. The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to bone marrow in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity[16]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823822/#R16] + * *Definition* = One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge [1315]. The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to bone marrow in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity[16]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823822/#R16 ] ## Synonyms - * dorsal fat body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] - * pro-vertebral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] + * dorsal fat body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/ ] + * pro-vertebral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/ ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0009202.md b/md/UBERON/02/UBERON_0009202.md index bb41137727..9cff0ae6dd 100644 --- a/md/UBERON/02/UBERON_0009202.md +++ b/md/UBERON/02/UBERON_0009202.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0009502.md b/md/UBERON/02/UBERON_0009502.md index 87afd8b74c..eb680fa21b 100644 --- a/md/UBERON/02/UBERON_0009502.md +++ b/md/UBERON/02/UBERON_0009502.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0009602.md b/md/UBERON/02/UBERON_0009602.md index ace52441c0..0d2f422e53 100644 --- a/md/UBERON/02/UBERON_0009602.md +++ b/md/UBERON/02/UBERON_0009602.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009602 * *Label* = left lung associated mesenchyme - * *Definition* = Mesenchyme that is part of a left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010002.md b/md/UBERON/02/UBERON_0010002.md index 8181936b95..45f36c2a7e 100644 --- a/md/UBERON/02/UBERON_0010002.md +++ b/md/UBERON/02/UBERON_0010002.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010002 * *Label* = pulmonary neuroendocrine body - * *Definition* = corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010921] + * *Definition* = corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010921 ] ## Synonyms - * NEB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010921] - * pulmonary neuroepithelial body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010921] + * NEB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010921 ] + * pulmonary neuroepithelial body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010921 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010202.md b/md/UBERON/02/UBERON_0010202.md index 79ec2193b4..c232f71e15 100644 --- a/md/UBERON/02/UBERON_0010202.md +++ b/md/UBERON/02/UBERON_0010202.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010202 * *Label* = lateral line - * *Definition* = The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_line[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001469] + * *Definition* = The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_line, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001469 ] ## Synonyms - * lateral lines [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001469[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral lines [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001469, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010302.md b/md/UBERON/02/UBERON_0010302.md index 7653ba5f74..55067ff625 100644 --- a/md/UBERON/02/UBERON_0010302.md +++ b/md/UBERON/02/UBERON_0010302.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010302 * *Label* = amnioserosa - * *Definition* = a single extraembryonic epithelium, which closes the germband dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1073/pnas.0709145105] + * *Definition* = a single extraembryonic epithelium, which closes the germband dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1073/pnas.0709145105 ] * *Comment* = Editor's notes: May be obsoleted once added to insect ontology. Coordinate with cell type in CL ## Synonyms - * amnion-serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004800] + * amnion-serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004800 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010402.md b/md/UBERON/02/UBERON_0010402.md index dbaaff95b5..546850b00e 100644 --- a/md/UBERON/02/UBERON_0010402.md +++ b/md/UBERON/02/UBERON_0010402.md @@ -8,7 +8,7 @@ * suprabasal cell layer of skin * suprabasal layer of epidermis - * suprabasal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001233] + * suprabasal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001233 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010702.md b/md/UBERON/02/UBERON_0010702.md index 2602f213ae..c55edda08d 100644 --- a/md/UBERON/02/UBERON_0010702.md +++ b/md/UBERON/02/UBERON_0010702.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010702 * *Label* = digit mesenchyme - * *Definition* = Mesenchyme that is part of a digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit](../../UBERON/44/UBERON_0002544.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0010902.md b/md/UBERON/02/UBERON_0010902.md index 79f22d3d04..3016f9fe87 100644 --- a/md/UBERON/02/UBERON_0010902.md +++ b/md/UBERON/02/UBERON_0010902.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010902 * *Label* = tibiotarsus cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [tibiotarsus endochondral element](../../UBERON/11/UBERON_0015011.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010902 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0011002.md b/md/UBERON/02/UBERON_0011002.md index df11298985..0787adf8b4 100644 --- a/md/UBERON/02/UBERON_0011002.md +++ b/md/UBERON/02/UBERON_0011002.md @@ -6,7 +6,7 @@ ## Synonyms - * articular cartilages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001644[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * articular cartilages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001644, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0011202.md b/md/UBERON/02/UBERON_0011202.md index 778b397d7f..8fc4dd5ef4 100644 --- a/md/UBERON/02/UBERON_0011202.md +++ b/md/UBERON/02/UBERON_0011202.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011202 * *Label* = urachus epithelium - * *Definition* = An epithelium that is part of a urachus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a urachus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * EHDAA2:0004725 - * UMLS:C1711256 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urachal_Epithelium] + * UMLS:C1711256 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urachal_Epithelium ] * ncithesaurus:Urachal_Epithelium ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urachus](../../UBERON/68/UBERON_0002068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011202 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0011302.md b/md/UBERON/02/UBERON_0011302.md index 1a936f7147..c8ca202430 100644 --- a/md/UBERON/02/UBERON_0011302.md +++ b/md/UBERON/02/UBERON_0011302.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011302 * *Label* = tunicate tunic - * *Definition* = Outer covering of an animal typically consisting primarily of cellulose (tunicin) in addition to varying amounts of water, protein and carbohydrates. The tunicate is a characteristic feature of Tunicata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascidiacea#Anatomy] + * *Definition* = Outer covering of an animal typically consisting primarily of cellulose (tunicin) in addition to varying amounts of water, protein and carbohydrates. The tunicate is a characteristic feature of Tunicata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascidiacea#Anatomy ] * *Comment* = Taxon notes: In some species tunicin occurs in small amounts. Some species calcium salts are deposited as spicules. In ascidians, the tunic is supplied with blood vessels. ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0011602.md b/md/UBERON/02/UBERON_0011602.md index 1a064db3d6..35cdc12689 100644 --- a/md/UBERON/02/UBERON_0011602.md +++ b/md/UBERON/02/UBERON_0011602.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011602 * *Label* = gingiva of lower jaw - * *Definition* = A gingiva that is part of a lower jaw region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gingiva that is part of a lower jaw region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gum of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18967] + * gum of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18967 ] * gum of mandible - * lower jaw gingiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59764] + * lower jaw gingiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59764 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gingiva](../../UBERON/28/UBERON_0001828.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0011802.md b/md/UBERON/02/UBERON_0011802.md index 29e609b2ab..4e3ebdeea2 100644 --- a/md/UBERON/02/UBERON_0011802.md +++ b/md/UBERON/02/UBERON_0011802.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011802 * *Label* = feather bud - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Synonyms - * elongate feather bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * feather papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * elongate feather bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * feather papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0012102.md b/md/UBERON/02/UBERON_0012102.md index bba71a6016..a262c5fd63 100644 --- a/md/UBERON/02/UBERON_0012102.md +++ b/md/UBERON/02/UBERON_0012102.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0012302.md b/md/UBERON/02/UBERON_0012302.md index 3eca3c609e..35eb911715 100644 --- a/md/UBERON/02/UBERON_0012302.md +++ b/md/UBERON/02/UBERON_0012302.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012302 * *Label* = male membranous urethra - * *Definition* = The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasci of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Membranous_urethra] + * *Definition* = The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasci of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Membranous_urethra ] ## Synonyms - * membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19674[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * pars intermedia urethrae masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Membranous_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars membranacea urethrae masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Membranous_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19674, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * pars intermedia urethrae masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Membranous_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars membranacea urethrae masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Membranous_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:19674 * MA:0002641 * SCTID:263343009 - * UMLS:C0458453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Membranous_Urethra] + * UMLS:C0458453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Membranous_Urethra ] * Wikipedia:Membranous_urethra * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [membranous urethra of male or female](../../UBERON/36/UBERON_0001336.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male urethra](../../UBERON/33/UBERON_0001333.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012302 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0012402.md b/md/UBERON/02/UBERON_0012402.md index 17cfcce1ef..a18846bdbb 100644 --- a/md/UBERON/02/UBERON_0012402.md +++ b/md/UBERON/02/UBERON_0012402.md @@ -6,13 +6,13 @@ ## Synonyms - * long pitch helicoidal muscle layer of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] - * longitudinal layer of small intestine muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] - * longitudinal muscle coat of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] - * longitudinal muscle layer of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] - * longitudinal muscle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] - * stratum helicoidale longi gradus tunicae muscularis intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * stratum longitudinale (tunica muscularis) (intestinum tenue) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14936] + * long pitch helicoidal muscle layer of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] + * longitudinal layer of small intestine muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] + * longitudinal muscle coat of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] + * longitudinal muscle layer of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] + * longitudinal muscle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] + * stratum helicoidale longi gradus tunicae muscularis intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * stratum longitudinale (tunica muscularis) (intestinum tenue) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14936 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [longitudinal muscle layer](../../UBERON/69/UBERON_0012369.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine smooth muscle](../../UBERON/39/UBERON_0004239.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0013502.md b/md/UBERON/02/UBERON_0013502.md index 2fcc72c623..2308923a47 100644 --- a/md/UBERON/02/UBERON_0013502.md +++ b/md/UBERON/02/UBERON_0013502.md @@ -6,7 +6,7 @@ ## Synonyms - * 5th pharyngeal arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001052] + * 5th pharyngeal arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001052 ] * 5th branchial arch mesenchyme * pharyngeal arch 5 mesenchyme @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0013702.md b/md/UBERON/02/UBERON_0013702.md index 4a5bf5f696..892d08f803 100644 --- a/md/UBERON/02/UBERON_0013702.md +++ b/md/UBERON/02/UBERON_0013702.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013702 * *Label* = body proper - * *Definition* = The region of the organism associated with the visceral organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000103] + * *Definition* = The region of the organism associated with the visceral organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000103 ] ## Synonyms - * body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000103] - * whole body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001489] + * body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000103 ] + * whole body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001489 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the vertebral column and ribcage. Examples: There is only one body proper[FMA:231424]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0014402.md b/md/UBERON/02/UBERON_0014402.md index c5441fef68..66e6c75860 100644 --- a/md/UBERON/02/UBERON_0014402.md +++ b/md/UBERON/02/UBERON_0014402.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014402 * *Label* = sex-specific anatomical structure - * *Definition* = A part of the body present only in a specific gender. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000174[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A part of the body present only in a specific gender. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000174, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms * gender-specific - * gender-specific anatomical structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000174] + * gender-specific anatomical structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000174 ] * sex-specific ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014402 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0014502.md b/md/UBERON/02/UBERON_0014502.md index 704694ff1e..f67b4a7add 100644 --- a/md/UBERON/02/UBERON_0014502.md +++ b/md/UBERON/02/UBERON_0014502.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014502 * *Label* = proximal phalanx of digit 2 - * *Definition* = A proximal phalanx that is part of a autopod digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal phalanx that is part of a autopod digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014502 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0014602.md b/md/UBERON/02/UBERON_0014602.md index 14ac864b63..5530d2f9b5 100644 --- a/md/UBERON/02/UBERON_0014602.md +++ b/md/UBERON/02/UBERON_0014602.md @@ -6,10 +6,10 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus descending division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1413[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHd [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1413[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus, descending division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHd] - * paraventricular nucleus of the hypothalamus, descending division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHd] + * paraventricular nucleus of the hypothalamus descending division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1413, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHd [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1413, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus, descending division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHd ] + * paraventricular nucleus of the hypothalamus, descending division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHd ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014602 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0014702.md b/md/UBERON/02/UBERON_0014702.md index 33bebfc700..c482f37fb8 100644 --- a/md/UBERON/02/UBERON_0014702.md +++ b/md/UBERON/02/UBERON_0014702.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [frontonasal prominence](../../UBERON/66/UBERON_0004066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014702 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0014802.md b/md/UBERON/02/UBERON_0014802.md index 26137f2a84..5eb1ad2616 100644 --- a/md/UBERON/02/UBERON_0014802.md +++ b/md/UBERON/02/UBERON_0014802.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014802 * *Label* = highest nuchal line - * *Definition* = Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * *Definition* = Of the nuchal lines, the upper, often faintly marked, is named the highest nuchal line, but is sometimes referred to as the Mempin Line, and to it the galea aponeurotica is attached. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Synonyms - * Mempin line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * Mempin line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014802 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0015002.md b/md/UBERON/02/UBERON_0015002.md index 19be0d9448..b698dae514 100644 --- a/md/UBERON/02/UBERON_0015002.md +++ b/md/UBERON/02/UBERON_0015002.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015002 * *Label* = radius-ulna endochondral element - * *Definition* = A radius-ulna bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A radius-ulna bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * radius-ulna element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * radius-ulna skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * radius-ulna element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * radius-ulna skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [radio-ulna](../../UBERON/15/UBERON_0006715.md)or[radius-ulna cartilage element](../../UBERON/48/UBERON_0010848.md)or[radius-ulna pre-cartilage condensation](../../UBERON/87/UBERON_0006287.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_0015102.md b/md/UBERON/02/UBERON_0015102.md index b69a2b9e33..c99d037099 100644 --- a/md/UBERON/02/UBERON_0015102.md +++ b/md/UBERON/02/UBERON_0015102.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015102 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_1000002.md b/md/UBERON/02/UBERON_1000002.md index 90280ebdf3..1113625e9d 100644 --- a/md/UBERON/02/UBERON_1000002.md +++ b/md/UBERON/02/UBERON_1000002.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000002 * *Label* = cranial midline area - * *Definition* = The middle part of the head, located approximately equidistant from the left and the right sides of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = The middle part of the head, located approximately equidistant from the left and the right sides of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000002 + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000102.md b/md/UBERON/02/UBERON_2000102.md index 4ba69e5681..566f2516de 100644 --- a/md/UBERON/02/UBERON_2000102.md +++ b/md/UBERON/02/UBERON_2000102.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000102 * *Label* = dorsal fin fold - * *Definition* = Region of the median fin fold that develops into the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Region of the median fin fold that develops into the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsal fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000102] + * dorsal fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000102 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000202.md b/md/UBERON/02/UBERON_2000202.md index d5ee5b127d..5dad5859cf 100644 --- a/md/UBERON/02/UBERON_2000202.md +++ b/md/UBERON/02/UBERON_2000202.md @@ -6,7 +6,7 @@ ## Synonyms - * EBA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000202] + * EBA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000202 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000302.md b/md/UBERON/02/UBERON_2000302.md index b849fb1f4b..9b45e10762 100644 --- a/md/UBERON/02/UBERON_2000302.md +++ b/md/UBERON/02/UBERON_2000302.md @@ -29,8 +29,10 @@ Obsoleted because this term refererences a teleost specific region of the habenu * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0008993 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_2000502.md b/md/UBERON/02/UBERON_2000502.md index 08e68aad23..74409e8ef4 100644 --- a/md/UBERON/02/UBERON_2000502.md +++ b/md/UBERON/02/UBERON_2000502.md @@ -6,8 +6,8 @@ ## Synonyms - * motor nucleus V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000502] - * nV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000502] + * motor nucleus V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000502 ] + * nV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000502 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000602.md b/md/UBERON/02/UBERON_2000602.md index c580c599ae..4aa48a2d2e 100644 --- a/md/UBERON/02/UBERON_2000602.md +++ b/md/UBERON/02/UBERON_2000602.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000602 * *Label* = uroneural - * *Definition* = Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_Schultze_1992[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Patterson_1968] + * *Definition* = Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_Schultze_1992, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Patterson_1968 ] * *Comment* = The presence of modified ural neural arches or uroneurals is interpreted as a synapomorphy of Teleostei. Uroneurals present some modifications in certain teleost subgroups and such specialized structures are named pleurostyle (e.g., ostarioclupeomorphs) and stegural (e.g., salmonids). ## Synonyms - * uroneurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000602[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * uroneurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000602, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000802.md b/md/UBERON/02/UBERON_2000802.md index 1cfe87758d..86d878dd4c 100644 --- a/md/UBERON/02/UBERON_2000802.md +++ b/md/UBERON/02/UBERON_2000802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000802 * *Label* = myotome somite 15 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2000902.md b/md/UBERON/02/UBERON_2000902.md index 4b2e4de631..a3a40e0a9c 100644 --- a/md/UBERON/02/UBERON_2000902.md +++ b/md/UBERON/02/UBERON_2000902.md @@ -6,7 +6,7 @@ ## Synonyms - * hypural muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000902[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * hypural muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000902, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2001002.md b/md/UBERON/02/UBERON_2001002.md index 49a8d20502..c238f9285f 100644 --- a/md/UBERON/02/UBERON_2001002.md +++ b/md/UBERON/02/UBERON_2001002.md @@ -28,8 +28,10 @@ Seems out of scope for uberon and/or not very useful as a class. ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_2001102.md b/md/UBERON/02/UBERON_2001102.md index 04e4ee8fd8..98066709aa 100644 --- a/md/UBERON/02/UBERON_2001102.md +++ b/md/UBERON/02/UBERON_2001102.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2001302.md b/md/UBERON/02/UBERON_2001302.md index ae93aaa222..61ca24a46e 100644 --- a/md/UBERON/02/UBERON_2001302.md +++ b/md/UBERON/02/UBERON_2001302.md @@ -6,8 +6,8 @@ ## Synonyms - * gX1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001302] - * nodose ganglion 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001302] + * gX1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001302 ] + * nodose ganglion 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001302 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2001502.md b/md/UBERON/02/UBERON_2001502.md index 258f84e867..47fe4b6140 100644 --- a/md/UBERON/02/UBERON_2001502.md +++ b/md/UBERON/02/UBERON_2001502.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001502 * *Label* = epiphyseal bar - * *Definition* = Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2001702.md b/md/UBERON/02/UBERON_2001702.md index c26e5d14c8..88489f6152 100644 --- a/md/UBERON/02/UBERON_2001702.md +++ b/md/UBERON/02/UBERON_2001702.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001702 * *Label* = infraorbital 7 - * *Definition* = Infraorbital that is the seventh bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the seventh bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2001902.md b/md/UBERON/02/UBERON_2001902.md index c4307ffd44..9f5c6746b6 100644 --- a/md/UBERON/02/UBERON_2001902.md +++ b/md/UBERON/02/UBERON_2001902.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2002002.md b/md/UBERON/02/UBERON_2002002.md index edf2040c01..d1707801be 100644 --- a/md/UBERON/02/UBERON_2002002.md +++ b/md/UBERON/02/UBERON_2002002.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002002 * *Label* = anterior distal serration of pectoral fin spine - * *Definition* = Process that is retrorse, thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior distal serration of pectoral fin spine is usually present on the distal section of the pectoral fin spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is retrorse, thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior distal serration of pectoral fin spine is usually present on the distal section of the pectoral fin spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anterior denticle of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002002] - * anterior serration of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002002] - * anterior thorn of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002002] - * anterior tooth of pectoral fin spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002002] - * pectoral fin spine anterior distal serration [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002002] + * anterior denticle of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002002 ] + * anterior serration of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002002 ] + * anterior thorn of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002002 ] + * anterior tooth of pectoral fin spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002002 ] + * pectoral fin spine anterior distal serration [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002002 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2002102.md b/md/UBERON/02/UBERON_2002102.md index 1e2c4ea6fd..71145f2a57 100644 --- a/md/UBERON/02/UBERON_2002102.md +++ b/md/UBERON/02/UBERON_2002102.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002102 * *Label* = epibranchial series - * *Definition* = Anatomical cluster that consists of the epibranchial elements within an individual. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of the epibranchial elements within an individual. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * epibranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002102[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * epibranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002102, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2002202.md b/md/UBERON/02/UBERON_2002202.md index d239dd07bd..a3097c8572 100644 --- a/md/UBERON/02/UBERON_2002202.md +++ b/md/UBERON/02/UBERON_2002202.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002202 * *Label* = intermediate nucleus - * *Definition* = Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-001220-2] + * *Definition* = Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-001220-2 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2005102.md b/md/UBERON/02/UBERON_2005102.md index 20b06f65ef..b9324087c2 100644 --- a/md/UBERON/02/UBERON_2005102.md +++ b/md/UBERON/02/UBERON_2005102.md @@ -6,7 +6,7 @@ ## Synonyms - * presumptive median fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005102] + * presumptive median fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005102 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_2005202.md b/md/UBERON/02/UBERON_2005202.md index 45ee51de62..2f7949fbbb 100644 --- a/md/UBERON/02/UBERON_2005202.md +++ b/md/UBERON/02/UBERON_2005202.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 1 caudal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005202] + * rostral medial 1 caudal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005202 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_2007002.md b/md/UBERON/02/UBERON_2007002.md index 9e721ad02e..85d8804a1a 100644 --- a/md/UBERON/02/UBERON_2007002.md +++ b/md/UBERON/02/UBERON_2007002.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007002 * *Label* = ventro-rostral cluster - * *Definition* = Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ventrorostral cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007002] - * vrc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007002] + * ventrorostral cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007002 ] + * vrc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007002 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3000002.md b/md/UBERON/02/UBERON_3000002.md index f19471011d..70fb74ad19 100644 --- a/md/UBERON/02/UBERON_3000002.md +++ b/md/UBERON/02/UBERON_3000002.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000002 * *Label* = alary cartilage - * *Definition* = Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, cup-shaped cartilage that are dorsal to the septomaxillae and anterior to the oblique cartilage. The anterior, convex face of each alary cartilage is synchondrotically fused to the superior prenasal cartilage and the ventral edge is fused to the superior margin of the crista intermedia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * alinasal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * cartilago alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * cartilago alaris nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * cartilago cupullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * copula anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * naseflngelknorpel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * processus alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] - * second upper labial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000002] + * alinasal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * cartilago alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * cartilago alaris nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * cartilago cupullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * copula anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * naseflngelknorpel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * processus alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] + * second upper labial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000002 ] ## Cross-references @@ -39,7 +39,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3000802.md b/md/UBERON/02/UBERON_3000802.md index faa4c2b5e7..1d815297d3 100644 --- a/md/UBERON/02/UBERON_3000802.md +++ b/md/UBERON/02/UBERON_3000802.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000802 * *Label* = fossa glenoidalis - * *Definition* = Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3001002.md b/md/UBERON/02/UBERON_3001002.md index 5c11c2eb9e..babe4b9c94 100644 --- a/md/UBERON/02/UBERON_3001002.md +++ b/md/UBERON/02/UBERON_3001002.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3001002 * *Label* = basale commune (tarsal) - * *Definition* = Amalgamation of distal tarsals 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Amalgamation of distal tarsals 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3010202.md b/md/UBERON/02/UBERON_3010202.md index 4e4b1e76a0..15c85da71e 100644 --- a/md/UBERON/02/UBERON_3010202.md +++ b/md/UBERON/02/UBERON_3010202.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3010502.md b/md/UBERON/02/UBERON_3010502.md index f31226a97f..6d2f9f073d 100644 --- a/md/UBERON/02/UBERON_3010502.md +++ b/md/UBERON/02/UBERON_3010502.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010502 * *Label* = duodeno-hepatic artery - * *Definition* = Major branch supplying blood via many smaller branches to the liver, duodenum, ventral wall of the stomach, and gall bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Major branch supplying blood via many smaller branches to the liver, duodenum, ventral wall of the stomach, and gall bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3010602.md b/md/UBERON/02/UBERON_3010602.md index 9a29406192..5e77d4fd43 100644 --- a/md/UBERON/02/UBERON_3010602.md +++ b/md/UBERON/02/UBERON_3010602.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010602 * *Label* = granular gland - * *Definition* = A gland that contains toxic secretions within the lumen. In frogs and salamanders, this is the larger of the two types of gland, the other being the mucuous gland[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A gland that contains toxic secretions within the lumen. In frogs and salamanders, this is the larger of the two types of gland, the other being the mucuous gland[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * poison gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * poison gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_3010802.md b/md/UBERON/02/UBERON_3010802.md index e51edbfc39..63f24c1694 100644 --- a/md/UBERON/02/UBERON_3010802.md +++ b/md/UBERON/02/UBERON_3010802.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_4000002.md b/md/UBERON/02/UBERON_4000002.md index 16bde9e203..86dcd64931 100644 --- a/md/UBERON/02/UBERON_4000002.md +++ b/md/UBERON/02/UBERON_4000002.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000002 * *Label* = obsolete mode of ossification - * *Definition* = The formation of bone or of a bony substanc, or the conversion of fibrous tissue or of cartilage into bone or a bony substance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_mpo, PMID:17572649] + * *Definition* = The formation of bone or of a bony substanc, or the conversion of fibrous tissue or of cartilage into bone or a bony substance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_mpo, PMID:17572649 ] ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0001503 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_4000102.md b/md/UBERON/02/UBERON_4000102.md index d595a04f16..fea761fa63 100644 --- a/md/UBERON/02/UBERON_4000102.md +++ b/md/UBERON/02/UBERON_4000102.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_4100002.md b/md/UBERON/02/UBERON_4100002.md index b0b17f4973..924b31bcff 100644 --- a/md/UBERON/02/UBERON_4100002.md +++ b/md/UBERON/02/UBERON_4100002.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4100002 * *Label* = obsolete ectepicondylar flange - * *Definition* = Flange on the dorsal part of the humerus, associated with extensor musculature of the forelimb (manus. carpus). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE: ni] + * *Definition* = Flange on the dorsal part of the humerus, associated with extensor musculature of the forelimb (manus. carpus). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE: ni ] ## Synonyms @@ -26,8 +26,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Nizar Ibrahim - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/02/UBERON_4200002.md b/md/UBERON/02/UBERON_4200002.md index e1519ccd94..40fa762e98 100644 --- a/md/UBERON/02/UBERON_4200002.md +++ b/md/UBERON/02/UBERON_4200002.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = A.Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_4200102.md b/md/UBERON/02/UBERON_4200102.md index b952b8d62c..ce80c163d4 100644 --- a/md/UBERON/02/UBERON_4200102.md +++ b/md/UBERON/02/UBERON_4200102.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/02/UBERON_4300002.md b/md/UBERON/02/UBERON_4300002.md index b08cf3f715..72254b1303 100644 --- a/md/UBERON/02/UBERON_4300002.md +++ b/md/UBERON/02/UBERON_4300002.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0000003.md b/md/UBERON/03/UBERON_0000003.md index 2d7f2c0d04..cd4437fee3 100644 --- a/md/UBERON/03/UBERON_0000003.md +++ b/md/UBERON/03/UBERON_0000003.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000003 * *Label* = naris - * *Definition* = Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:MAH] + * *Definition* = Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:MAH ] * *Comment* = consistency notes: we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure. Taxon notes: in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity ## Synonyms @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory system](../../UBERON/25/UBERON_0005725.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of paired external openings of the nasal chamber.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Naris refer to the external and interior naris (choana) of tetrapods, and to anterior and posterior naris of zebrafish. It seems now accepted that the structure is homologous: The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0000103.md b/md/UBERON/03/UBERON_0000103.md index 5b400313a6..0fa2b8317e 100644 --- a/md/UBERON/03/UBERON_0000103.md +++ b/md/UBERON/03/UBERON_0000103.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000103 * *Label* = life cycle stage boundary - * *Definition* = Instant starting or ending a life cycle stage. These can be arbitrary/fiat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Instant starting or ending a life cycle stage. These can be arbitrary/fiat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0000203.md b/md/UBERON/03/UBERON_0000203.md index ceee73968c..5110258a04 100644 --- a/md/UBERON/03/UBERON_0000203.md +++ b/md/UBERON/03/UBERON_0000203.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000203 * *Label* = pallium - * *Definition* = Dorsal part (roof region) of the telencephalon[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021543[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pallium_(neuroanatomy)] + * *Definition* = Dorsal part (roof region) of the telencephalon[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021543, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pallium_(neuroanatomy) ] * *Comment* = Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP] ## Synonyms - * area dorsalis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000505] - * dorsal part of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * dorsal telencephalic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000505] - * dorsal telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000505] + * area dorsalis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000505 ] + * dorsal part of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * dorsal telencephalic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000505 ] + * dorsal telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000505 ] ## Cross-references @@ -47,9 +47,10 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T12:03:09Z * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007333 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000203 * *[see also](../../so/rdf-schema#seeAlso.md)* = https://sourceforge.net/tracker/?func=detail&aid=3535324&group_id=76834&atid=994726 +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_0000303.md b/md/UBERON/03/UBERON_0000303.md index 94dc3a7ebf..9afec799ca 100644 --- a/md/UBERON/03/UBERON_0000303.md +++ b/md/UBERON/03/UBERON_0000303.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000303 * *Label* = adductor longus - * *Definition* = An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_longus_muscle] + * *Definition* = An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_longus_muscle ] * *Comment* = Definition generalized to accommodate AAO class - "Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus." [AAO:0010034] ## Synonyms * adductor longus muscle - * Musculus adductor longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * long adductor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000029] - * musculus adductor longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000029] + * Musculus adductor longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * long adductor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000029 ] + * musculus adductor longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000029 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0000403.md b/md/UBERON/03/UBERON_0000403.md index 7fa14420d0..b7e4e777aa 100644 --- a/md/UBERON/03/UBERON_0000403.md +++ b/md/UBERON/03/UBERON_0000403.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000403 * *Label* = scalp - * *Definition* = The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.456.810] + * *Definition* = The outer covering of the calvaria. It is composed of several layers: SKIN; subcutaneous connective tissue; the occipitofrontal muscle which includes the tendonous galea aponeurotica; Loose connective tissue; and the pericranium (the PERIOSTEUM of the SKULL). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.456.810 ] ## Synonyms - * scalpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalp[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * scalpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalp, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A01.456.810 * OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA * SCTID:181480002 - * UMLS:C0036270 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scalp] + * UMLS:C0036270 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scalp ] * Wikipedia:Scalp * galen:Scalp * http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png @@ -32,8 +32,8 @@ * [anatomical cluster](../../UBERON/77/UBERON_0000477.md) * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [skin of head](../../UBERON/84/UBERON_0001084.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [epicranial aponeurosis](../../UBERON/61/UBERON_0006661.md) ## Equivalencies @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001003.md b/md/UBERON/03/UBERON_0001003.md index 5f1c4bcc87..5c6aaf5882 100644 --- a/md/UBERON/03/UBERON_0001003.md +++ b/md/UBERON/03/UBERON_0001003.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001003 * *Label* = epidermis - * *Definition* = The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidermis_(skin)] + * *Definition* = The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidermis_(skin) ] * *Comment* = Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes). ## Synonyms @@ -29,7 +29,7 @@ * MIAA:0000154 * SCTID:361694003 * TAO:0000105 - * UMLS:C0014520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epidermis] + * UMLS:C0014520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epidermis ] * VHOG:0000077 * Wikipedia:Epidermis_(skin) * XAO:0000028 @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) outer epithelia in all metazoan animals are homologous. (...) The ancestor of all metazoans likely had an epidermis with a basal extracellular matrix (ECM), an apical extracellular glycocalyx, and one cilium with a striated rootlet per cell.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epidermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001103.md b/md/UBERON/03/UBERON_0001103.md index e577abb8de..d2865148c5 100644 --- a/md/UBERON/03/UBERON_0001103.md +++ b/md/UBERON/03/UBERON_0001103.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001103 * *Label* = diaphragm - * *Definition* = A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002279] + * *Definition* = A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002279 ] * *Comment* = The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution) ## Synonyms - * diaphragm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000341] + * diaphragm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000341 ] * diaphragm of thorax * thoracic diaphragm - * midriff [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000341] - * phren [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000341] + * midriff [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000341 ] + * phren [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000341 ] ## Cross-references @@ -29,7 +29,7 @@ * MESH:A02.633.567.900.300 * OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA * SCTID:181614006 - * UMLS:C0011980 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Diaphragm] + * UMLS:C0011980 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Diaphragm ] * VHOG:0000713 * Wikipedia:Thoracid_diaphragm * ncithesaurus:Diaphragm @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mammals are characterized by a diaphragm, which separates the thoracic portion of the body cavity from the abdominal region and assists in drawing air into the lungs and forcing it out. Modern reptiles lack a muscular diaphragm and it is reasonable to suppose that the diaphragm developed as a new device that made possible a large degree of oxygen intake for active animals. The change may have taken place during the transition from reptile to mammal (...).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = phrenic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001203.md b/md/UBERON/03/UBERON_0001203.md index 09802e6da4..10de102586 100644 --- a/md/UBERON/03/UBERON_0001203.md +++ b/md/UBERON/03/UBERON_0001203.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001203 * *Label* = muscularis mucosae of stomach - * *Definition* = A muscularis mucosa that is part of a mucosa of stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a mucosa of stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,14 +13,14 @@ * lamina muscularis of gastric mucosa * muscular coat of stomach * stomach muscularis mucosa - * tunica muscularis gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14924[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica muscularis gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14924, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14924 * MA:0002684 * SCTID:64551004 - * UMLS:C0227200 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Muscularis_Mucosa] + * UMLS:C0227200 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Muscularis_Mucosa ] * ncithesaurus:Gastric_Muscularis_Mucosa ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mucosa of stomach](../../UBERON/99/UBERON_0001199.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001303.md b/md/UBERON/03/UBERON_0001303.md index 94ece401a7..55a94b6e53 100644 --- a/md/UBERON/03/UBERON_0001303.md +++ b/md/UBERON/03/UBERON_0001303.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001303 * *Label* = left uterine tube - * *Definition* = A fallopian tube that is part of a left side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fallopian tube that is part of a left side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:18484 * MA:0001716 * SCTID:280107002 - * UMLS:C0227902 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Fallopian_Tube] + * UMLS:C0227902 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Fallopian_Tube ] * ncithesaurus:Left_Fallopian_Tube ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fallopian tube](../../UBERON/89/UBERON_0003889.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001403.md b/md/UBERON/03/UBERON_0001403.md index f6e0ec586a..4f1aae7617 100644 --- a/md/UBERON/03/UBERON_0001403.md +++ b/md/UBERON/03/UBERON_0001403.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001403 * *Label* = longissimus capitis - * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longissimus#Longissimus_capitis] + * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longissimus#Longissimus_capitis ] ## Synonyms - * musculus longissimus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001649] - * trachelomastoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001649] + * musculus longissimus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001649 ] + * trachelomastoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001649 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:22714 * MA:0002336 * SCTID:244861007 - * UMLS:C0224309 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longissimus_Capitis] + * UMLS:C0224309 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longissimus_Capitis ] * Wikipedia:Longissimus#Longissimus_capitis * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png * ncithesaurus:Longissimus_Capitis @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001503.md b/md/UBERON/03/UBERON_0001503.md index eaaa983ff5..2f0cae6aff 100644 --- a/md/UBERON/03/UBERON_0001503.md +++ b/md/UBERON/03/UBERON_0001503.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001503 * *Label* = dorsal interosseous of manus - * *Definition* = The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_interossei_muscles_(hand)] + * *Definition* = The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_interossei_muscles_(hand) ] ## Synonyms - * dorsal hand interosseus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002314] - * dorsal interosseous of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37418] + * dorsal hand interosseus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002314 ] + * dorsal interosseous of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37418 ] * dorsal manus interosseous muscle * musculi interossei dorsales manus @@ -17,7 +17,7 @@ * FMA:37418 * MA:0002314 * SCTID:245002007 - * UMLS:C1744530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Hand_Interosseous_Muscle] + * UMLS:C1744530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Hand_Interosseous_Muscle ] * Wikipedia:Dorsal_interossei_muscles_(hand) * ncithesaurus:Dorsal_Hand_Interosseous_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001603.md b/md/UBERON/03/UBERON_0001603.md index ab9a349462..c991a31ca8 100644 --- a/md/UBERON/03/UBERON_0001603.md +++ b/md/UBERON/03/UBERON_0001603.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001603 * *Label* = lateral rectus extra-ocular muscle - * *Definition* = The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_rectus_muscle] + * *Definition* = The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_rectus_muscle ] ## Synonyms * M. rectus lateralis - * lateral rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49038] - * lateral rectus extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001280] + * lateral rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49038 ] + * lateral rectus extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001280 ] * lateral rectus muscle - * musculus rectus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010107] + * musculus rectus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010107 ] * lateral extraocular muscle - * musculus rectus lateralis bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_rectus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus rectus lateralis bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_rectus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0001280 * SCTID:181152008 * TAO:0000383 - * UMLS:C0582821 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Rectus_Muscle] + * UMLS:C0582821 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Rectus_Muscle ] * VHOG:0001129 * Wikipedia:Lateral_rectus_muscle * ZFA:0000383 @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004837 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001703.md b/md/UBERON/03/UBERON_0001703.md index 1e8cdc6d4c..28a530b72a 100644 --- a/md/UBERON/03/UBERON_0001703.md +++ b/md/UBERON/03/UBERON_0001703.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001703 * *Label* = neurocranium - * *Definition* = Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuroranium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001580] + * *Definition* = Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuroranium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001580 ] * *Comment* = Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ... ## Synonyms * brain box - * brain case [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001580] - * brain pan [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/braincase] - * braincase [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001580] + * brain case [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001580 ] + * brain pan [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/braincase ] + * braincase [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001580 ] ## Cross-references @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = neurocranial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001803.md b/md/UBERON/03/UBERON_0001803.md index 6aea361619..96009cd7d9 100644 --- a/md/UBERON/03/UBERON_0001803.md +++ b/md/UBERON/03/UBERON_0001803.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001803 * *Label* = epithelium of lens - * *Definition* = The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_(anatomy)#Lens_Epithelium] + * *Definition* = The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_(anatomy)#Lens_Epithelium ] * *Comment* = Usage notes: this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former ## Synonyms - * epithelial tissue of eye lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium lentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58871[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * epithelium of eye lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eye lens epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eye lens epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lens epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of eye lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium lentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58871, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * epithelium of eye lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eye lens epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eye lens epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lens epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lens epithelium ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lens of camera-type eye](../../UBERON/65/UBERON_0000965.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0001903.md b/md/UBERON/03/UBERON_0001903.md index b68e5ebfd5..07484989f4 100644 --- a/md/UBERON/03/UBERON_0001903.md +++ b/md/UBERON/03/UBERON_0001903.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001903 * *Label* = thalamic reticular nucleus - * *Definition* = The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamic_reticular_nucleus] + * *Definition* = The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamic_reticular_nucleus ] * *Comment* = AO notes: only MA considers this part of a subthalamus; MA also considers a subthalamus part of a thalamus ## Synonyms - * nucleus reticularis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62026[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus reticularis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62026, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * reticular nuclear group * reticular nucleus of thalamus * reticular nucleus of the thalamus * reticular nucleus-2 * reticular thalamic nucleus - * nuclei reticulares (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticularis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamic_reticular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticulatus (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus thalamicus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * reticular nucleus thalamus (Arnold) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365] - * reticulatum thalami (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei reticulares (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticularis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamic_reticular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticulatus (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus thalamicus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * reticular nucleus thalamus (Arnold) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365 ] + * reticulatum thalami (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,7 +32,7 @@ * FMA:62026 * MA:0000876 * NIF_GrossAnatomy:birnlex_1721 - * NeuroNames:365 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1721] + * NeuroNames:365 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1721 ] * SCTID:279164008 * Wikipedia:Thalamic_reticular_nucleus * http://upload.wikimedia.org/wikipedia/commons/a/ab/Constudthal.gif @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002003.md b/md/UBERON/03/UBERON_0002003.md index a1bedec35d..b0e745d79b 100644 --- a/md/UBERON/03/UBERON_0002003.md +++ b/md/UBERON/03/UBERON_0002003.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002003 * *Label* = peripheral nerve - * *Definition* = Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peripheral_nerve] + * *Definition* = Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peripheral_nerve ] * *Comment* = TODO - check definition vs nerve. See notes for cranial nerve II (optic nerve) ## Synonyms - * nerve part of peripheral nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1615] + * nerve part of peripheral nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1615 ] * peripheral nerve tree ## Cross-references @@ -23,7 +23,7 @@ * MESH:A08.800.800 * NIF_GrossAnatomy:birnlex_1615 * SCTID:244457007 - * UMLS:C0031119 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peripheral_Nerve] + * UMLS:C0031119 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peripheral_Nerve ] * VHOG:0000901 * Wikipedia:Peripheral_nerve * XAO:0000204 @@ -53,8 +53,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003377 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002103.md b/md/UBERON/03/UBERON_0002103.md index d747e7a93f..fc3cd35e26 100644 --- a/md/UBERON/03/UBERON_0002103.md +++ b/md/UBERON/03/UBERON_0002103.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002103 * *Label* = hindlimb - * *Definition* = A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hindlimb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_limb] + * *Definition* = A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hindlimb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_limb ] * *Comment* = AO notes: note that this corresponds to FMA:'free lower limb' (a limb segment), NOT 'lower limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Note that AAO class probably refers to skeleton ## Synonyms - * free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24879[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24879, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] * hind limb - * hind-limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000150] + * hind-limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000150 ] * hindlimb * inferior member * lower limb - * membrum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7184[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * free part of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24879] + * membrum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7184, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * free part of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24879 ] * lower extremity - * membrum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_limb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * membrum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_limb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pelvic appendage ## Cross-references @@ -38,8 +38,8 @@ * MESH:A13.473 * MIAA:0000395 * SCTID:182281004 - * UMLS:C0023216 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Extremity] - * UMLS:C1522391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hind_Limb] + * UMLS:C0023216 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Extremity ] + * UMLS:C1522391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hind_Limb ] * VHOG:0000337 * VSAO:0000150 * Wikipedia:Hindlimb @@ -66,7 +66,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limb](../../UBERON/01/UBERON_0002101.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -77,8 +77,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = crural * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002203.md b/md/UBERON/03/UBERON_0002203.md index 778bafc768..0097852d14 100644 --- a/md/UBERON/03/UBERON_0002203.md +++ b/md/UBERON/03/UBERON_0002203.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002203 * *Label* = vasculature of eye - * *Definition* = Vasculature that is part of the eye region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726] + * *Definition* = Vasculature that is part of the eye region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726 ] * *Comment* = not part of the eye in ZFA. Note this changed to a blood vessel in ZFA ## Synonyms - * eye vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ocular blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007057] + * eye vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ocular blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007057 ] * ocular vasculature - * vascular network of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * vascular network of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * eye vasculature * optic vasculature @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002303.md b/md/UBERON/03/UBERON_0002303.md index de9f569662..5df168580e 100644 --- a/md/UBERON/03/UBERON_0002303.md +++ b/md/UBERON/03/UBERON_0002303.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002303 * *Label* = juxtaglomerular apparatus - * *Definition* = An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072206[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Juxtaglomerular_apparatus] + * *Definition* = An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072206, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Juxtaglomerular_apparatus ] ## Synonyms * juxtaglomerular complex - * complexus juxtaglomerularis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * complexus juxtaglomerularis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002546 * MESH:A05.810.453.736.520.520 * SCTID:362219002 - * UMLS:C0022445 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Juxtaglomerular_Apparatus] + * UMLS:C0022445 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Juxtaglomerular_Apparatus ] * Wikipedia:Juxtaglomerular_apparatus * ncithesaurus:Juxtaglomerular_Apparatus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002403.md b/md/UBERON/03/UBERON_0002403.md index 08f7e6256d..d06b10d592 100644 --- a/md/UBERON/03/UBERON_0002403.md +++ b/md/UBERON/03/UBERON_0002403.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002403 * *Label* = internal intercostal muscle - * *Definition* = Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_muscle] + * *Definition* = Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -19,7 +19,7 @@ * MA:0002326 * OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA * SCTID:244890001 - * UMLS:C1744536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Intercostal_Muscle] + * UMLS:C1744536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Intercostal_Muscle ] * VHOG:0000905 * Wikipedia:Intercostal_muscle * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002503.md b/md/UBERON/03/UBERON_0002503.md index 76a7c5054a..72e82a5ce5 100644 --- a/md/UBERON/03/UBERON_0002503.md +++ b/md/UBERON/03/UBERON_0002503.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002503 * *Label* = greater trochanter - * *Definition* = The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_trochanter] + * *Definition* = The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_trochanter ] ## Synonyms * great trochanter * greater trochanter of femur - * trochanter major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_trochanter[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trochanter major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_trochanter, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:32852 * MA:0002822 * SCTID:182050001 - * UMLS:C0223865 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Great_Trochanter] + * UMLS:C0223865 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Great_Trochanter ] * Wikipedia:Greater_trochanter * galen:GreaterTrochanter * http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002603.md b/md/UBERON/03/UBERON_0002603.md index 6ebcc0c6cc..5d4fbd92aa 100644 --- a/md/UBERON/03/UBERON_0002603.md +++ b/md/UBERON/03/UBERON_0002603.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002603 * *Label* = paraterminal gyrus - * *Definition* = The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraterminal_gyrus] + * *Definition* = The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraterminal_gyrus ] ## Synonyms - * precommissural hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61919] - * subcallosal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61919] - * gyrus paraterminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraterminal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus subcallosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraterminal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hippocampus praecommissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:171[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hippocampus precommissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:171[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paraterminal body (Noback) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:171] - * peduncle of the corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:171] + * precommissural hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61919 ] + * subcallosal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61919 ] + * gyrus paraterminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraterminal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus subcallosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraterminal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hippocampus praecommissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:171, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hippocampus precommissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:171, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paraterminal body (Noback) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:171 ] + * peduncle of the corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:171 ] ## Cross-references @@ -22,8 +22,8 @@ * BAMS:SuCG * FMA:61919 * NIF_GrossAnatomy:birnlex_1138 - * NeuroNames:171 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1138] - * UMLS:C0175231 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1138] + * NeuroNames:171 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1138 ] + * UMLS:C0175231 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1138 ] * Wikipedia:Paraterminal_gyrus * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002703.md b/md/UBERON/03/UBERON_0002703.md index 2bd614fb2f..8269268ccb 100644 --- a/md/UBERON/03/UBERON_0002703.md +++ b/md/UBERON/03/UBERON_0002703.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002703 * *Label* = precentral gyrus - * *Definition* = The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Precentral_gyrus] + * *Definition* = The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Precentral_gyrus ] ## Synonyms - * precentral convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61894] - * prerolandic gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61894] - * anterior central gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:89] - * gyrus centralis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:89[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus praecentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:89[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * motor cortex (Noback) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:89] + * precentral convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61894 ] + * prerolandic gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61894 ] + * anterior central gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:89 ] + * gyrus centralis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:89, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus praecentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:89, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * motor cortex (Noback) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:89 ] ## Cross-references @@ -20,9 +20,9 @@ * EFO:0001373 * FMA:61894 * NIF_GrossAnatomy:birnlex_1455 - * NeuroNames:89 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1455] - * UMLS:C0152299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1455] - * UMLS:C0152299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Precentral_Gyrus] + * NeuroNames:89 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1455 ] + * UMLS:C0152299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1455 ] + * UMLS:C0152299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Precentral_Gyrus ] * Wikipedia:Precentral_gyrus * http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png * ncithesaurus:Precentral_Gyrus @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002803.md b/md/UBERON/03/UBERON_0002803.md index cb0293300a..2fd368abe4 100644 --- a/md/UBERON/03/UBERON_0002803.md +++ b/md/UBERON/03/UBERON_0002803.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002803 * *Label* = right parietal lobe - * *Definition* = A parietal lobe that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parietal lobe that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:72973 * NIF_GrossAnatomy:birnlex_1729 * SCTID:314146000 - * UMLS:C1281959 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1729] + * UMLS:C1281959 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1729 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parietal lobe](../../UBERON/72/UBERON_0001872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0002903.md b/md/UBERON/03/UBERON_0002903.md index 409288887e..c4086b1f98 100644 --- a/md/UBERON/03/UBERON_0002903.md +++ b/md/UBERON/03/UBERON_0002903.md @@ -6,10 +6,10 @@ ## Synonyms - * lunate fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83788] - * sulcus lunatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4017] - * sulcus simialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4017] - * lus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4017[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * lunate fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83788 ] + * sulcus lunatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4017 ] + * sulcus simialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4017 ] + * lus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4017, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -17,9 +17,9 @@ * BM:Tel-Cx-LUS * FMA:83788 * NIF_GrossAnatomy:birnlex_4017 - * NeuroNames:150 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4017] - * UMLS:C0262278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4017] - * UMLS:C0262278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lunate_Sulcus] + * NeuroNames:150 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4017 ] + * UMLS:C0262278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4017 ] + * UMLS:C0262278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lunate_Sulcus ] * ncithesaurus:Lunate_Sulcus ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003003.md b/md/UBERON/03/UBERON_0003003.md index eecf5b1459..d3d2239e60 100644 --- a/md/UBERON/03/UBERON_0003003.md +++ b/md/UBERON/03/UBERON_0003003.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003003 * *Label* = microfilament - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Microfilament] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Microfilament ] ## Synonyms - * actin filament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63850] - * microfilament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63850] - * microfilamentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63850] + * actin filament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63850 ] + * microfilament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63850 ] + * microfilamentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63850 ] ## Cross-references @@ -18,7 +18,7 @@ * GO:0005884 * MESH:A11.284.195.190.750.510 * NIF_Subcellular:sao2006047981 - * UMLS:C0025979 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Actin_Filament] + * UMLS:C0025979 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Actin_Filament ] * Wikipedia:Microfilament * ncithesaurus:Actin_Filament @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003103.md b/md/UBERON/03/UBERON_0003103.md index 595fd3dd2a..649fab603f 100644 --- a/md/UBERON/03/UBERON_0003103.md +++ b/md/UBERON/03/UBERON_0003103.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003103 * *Label* = compound organ - * *Definition* = Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000024] + * *Definition* = Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000024 ] ## Synonyms @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003203.md b/md/UBERON/03/UBERON_0003203.md index 95643c9e21..eb8b2f7b82 100644 --- a/md/UBERON/03/UBERON_0003203.md +++ b/md/UBERON/03/UBERON_0003203.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00005091 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000142 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003203 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_0003303.md b/md/UBERON/03/UBERON_0003303.md index 389f28d60e..bb21aa6f8a 100644 --- a/md/UBERON/03/UBERON_0003303.md +++ b/md/UBERON/03/UBERON_0003303.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003303 * *Label* = roof plate of medulla oblongata - * *Definition* = A roof plate that is part of a medulla oblongata [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a medulla oblongata [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bulb roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bulb roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblongata roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblongata roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblonmgata roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblonmgata roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metepencephalon roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metepencephalon roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000776] - * roof plate of bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate of medulla oblonmgata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate of metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of medulla oblonmgata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate of metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roofplate medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000776] + * bulb roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bulb roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblongata roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblongata roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblonmgata roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblonmgata roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metepencephalon roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metepencephalon roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000776 ] + * roof plate of bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate of medulla oblonmgata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate of metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of medulla oblonmgata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate of metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roofplate medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000776 ] ## Cross-references @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the medulla oblongata. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003403.md b/md/UBERON/03/UBERON_0003403.md index dfbf1f8fe4..0cfa84a23d 100644 --- a/md/UBERON/03/UBERON_0003403.md +++ b/md/UBERON/03/UBERON_0003403.md @@ -3,43 +3,43 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003403 * *Label* = skin of forearm - * *Definition* = A zone of skin that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forearm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38265] - * intermediate segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antebrachial region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forearm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38265 ] + * intermediate segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -58,15 +58,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003503.md b/md/UBERON/03/UBERON_0003503.md index 0038629a25..a59a331af1 100644 --- a/md/UBERON/03/UBERON_0003503.md +++ b/md/UBERON/03/UBERON_0003503.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003503 * *Label* = leg blood vessel - * *Definition* = A blood vessel that is part of a leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003603.md b/md/UBERON/03/UBERON_0003603.md index 76ec76c1db..5c8be4aa8c 100644 --- a/md/UBERON/03/UBERON_0003603.md +++ b/md/UBERON/03/UBERON_0003603.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003603 * *Label* = lower respiratory tract cartilage - * *Definition* = A cartilage that is part of a lower respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage that is part of a lower respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cartilage of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cartilage of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001819 - * UMLS:C1708759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Respiratory_Tract_Cartilage] + * UMLS:C1708759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Respiratory_Tract_Cartilage ] * ncithesaurus:Lower_Respiratory_Tract_Cartilage ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower respiratory tract](../../UBERON/58/UBERON_0001558.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003703.md b/md/UBERON/03/UBERON_0003703.md index e6e31e024a..48577435fe 100644 --- a/md/UBERON/03/UBERON_0003703.md +++ b/md/UBERON/03/UBERON_0003703.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003703 * *Label* = extrahepatic bile duct - * *Definition* = Passages external to the liver for the conveyance of bile. These include the common bile duct and the common hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.159.183.079] + * *Definition* = Passages external to the liver for the conveyance of bile. These include the common bile duct and the common hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.159.183.079 ] ## Synonyms - * bile duct extrahepatic part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002659] - * extrahepatic biliary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:281] + * bile duct extrahepatic part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002659 ] + * extrahepatic biliary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:281 ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002659 * MESH:A03.159.183.079 * SCTID:276158002 - * UMLS:C0206187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extrahepatic_Bile_Duct] + * UMLS:C0206187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extrahepatic_Bile_Duct ] * ncithesaurus:Extrahepatic_Bile_Duct ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0003903.md b/md/UBERON/03/UBERON_0003903.md index fe38f79aee..5e551a4d3e 100644 --- a/md/UBERON/03/UBERON_0003903.md +++ b/md/UBERON/03/UBERON_0003903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003903 * *Label* = bursa of Fabricius - * *Definition* = an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctodeal region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048540[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bursa_of_Fabricius] + * *Definition* = an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctodeal region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048540, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bursa_of_Fabricius ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004003.md b/md/UBERON/03/UBERON_0004003.md index 11a414d3bb..1c516a031c 100644 --- a/md/UBERON/03/UBERON_0004003.md +++ b/md/UBERON/03/UBERON_0004003.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004003 * *Label* = cerebellum hemisphere lobule - * *Definition* = the region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009963] + * *Definition* = the region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009963 ] * *Comment* = TODO - define as a region overlapping ## Synonyms * cerebellar hemisphere lobule - * lobule of cerebellar hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83880] - * lobule of hemisphere of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83880] + * lobule of cerebellar hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83880 ] + * lobule of hemisphere of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83880 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellum lobule](../../UBERON/04/UBERON_0004004.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004103.md b/md/UBERON/03/UBERON_0004103.md index 9557887ed4..b6b4d2895f 100644 --- a/md/UBERON/03/UBERON_0004103.md +++ b/md/UBERON/03/UBERON_0004103.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004103 * *Label* = alveolar ridge - * *Definition* = one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0006477[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_ridge] + * *Definition* = one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0006477, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_ridge ] * *Comment* = note that in BTO, this is part of an embryo ## Synonyms - * alveolar body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004189] - * alveolar bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004189] + * alveolar body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004189 ] + * alveolar bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004189 ] * alveolar margin - * alveolar process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:215] + * alveolar process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:215 ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:215 * MESH:A02.835.232.781.324.502.125 * SCTID:245790000 - * UMLS:C0447411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Ridge] + * UMLS:C0447411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Ridge ] * Wikipedia:Alveolar_ridge * ncithesaurus:Alveolar_Ridge @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004203.md b/md/UBERON/03/UBERON_0004203.md index 069497f88d..c2194c54f1 100644 --- a/md/UBERON/03/UBERON_0004203.md +++ b/md/UBERON/03/UBERON_0004203.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004203 * *Label* = cortical collecting duct - * *Definition* = The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072059] + * *Definition* = The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072059 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004403.md b/md/UBERON/03/UBERON_0004403.md index 71fdf80bf9..b0c2cece30 100644 --- a/md/UBERON/03/UBERON_0004403.md +++ b/md/UBERON/03/UBERON_0004403.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004403 * *Label* = periosteum of epiphysis - * *Definition* = A periosteum that is part of a epiphysis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A periosteum that is part of a epiphysis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epiphysis periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32687] + * epiphysis periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32687 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epiphysis](../../UBERON/37/UBERON_0001437.md) and [periosteum](../../UBERON/15/UBERON_0002515.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004503.md b/md/UBERON/03/UBERON_0004503.md index a6ef963ffa..baca1d4ab3 100644 --- a/md/UBERON/03/UBERON_0004503.md +++ b/md/UBERON/03/UBERON_0004503.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004503 * *Label* = skeletal muscle tissue of digastric - * *Definition* = A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digastric muscle](../../UBERON/62/UBERON_0001562.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004603.md b/md/UBERON/03/UBERON_0004603.md index ff383e20d6..8ae50310be 100644 --- a/md/UBERON/03/UBERON_0004603.md +++ b/md/UBERON/03/UBERON_0004603.md @@ -7,14 +7,15 @@ ## Synonyms - * third rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7638] + * costa III [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * third rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7638 ] ## Cross-references * FMA:7638 * MA:0001403 * SCTID:244658008 - * UMLS:C1709950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_3] + * UMLS:C1709950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_3 ] * ncithesaurus:Rib_3 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004703.md b/md/UBERON/03/UBERON_0004703.md index 6bdd7688d3..f3550007c9 100644 --- a/md/UBERON/03/UBERON_0004703.md +++ b/md/UBERON/03/UBERON_0004703.md @@ -7,11 +7,11 @@ ## Synonyms - * dorsal thalamus (Anthoney) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62007] - * dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62007] - * thalamus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thalamus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMC:PMC3345571] - * thalamus, pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000653] + * dorsal thalamus (Anthoney) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62007 ] + * dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62007 ] + * thalamus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thalamus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMC:PMC3345571 ] + * thalamus, pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000653 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7776 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004803.md b/md/UBERON/03/UBERON_0004803.md index 0907c3ed10..2a3e80e568 100644 --- a/md/UBERON/03/UBERON_0004803.md +++ b/md/UBERON/03/UBERON_0004803.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004803 * *Label* = penis epithelium - * *Definition* = An epithelium that is part of a penis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a penis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * penis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * penis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [penis](../../UBERON/89/UBERON_0000989.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0004903.md b/md/UBERON/03/UBERON_0004903.md index 15f3723510..5973ceb1a0 100644 --- a/md/UBERON/03/UBERON_0004903.md +++ b/md/UBERON/03/UBERON_0004903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004903 * *Label* = bronchoalveolar duct junction - * *Definition* = A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004390] + * *Definition* = A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004390 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005003.md b/md/UBERON/03/UBERON_0005003.md index 196f25ca15..8b6473275a 100644 --- a/md/UBERON/03/UBERON_0005003.md +++ b/md/UBERON/03/UBERON_0005003.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005003 * *Label* = mucosa of left hepatic duct - * *Definition* = A mucosa that is part of a left hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a left hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left hepatic duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left hepatic duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left hepatic duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left hepatic duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left hepatic ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14693] - * mucosa of organ of left hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left hepatic duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left hepatic duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left hepatic duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left hepatic duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left hepatic ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14693 ] + * mucosa of organ of left hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left hepatic duct](../../UBERON/77/UBERON_0001177.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005103.md b/md/UBERON/03/UBERON_0005103.md index 15b528016e..c8135f2ec2 100644 --- a/md/UBERON/03/UBERON_0005103.md +++ b/md/UBERON/03/UBERON_0005103.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005103 * *Label* = mesonephric epithelium - * *Definition* = An epithelium that is part of a mesonephros [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a mesonephros [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005203.md b/md/UBERON/03/UBERON_0005203.md index ebe0b51ead..81f24d220d 100644 --- a/md/UBERON/03/UBERON_0005203.md +++ b/md/UBERON/03/UBERON_0005203.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005203 * *Label* = trachea gland - * *Definition* = A gland that is part of a submucosa of trachea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a submucosa of trachea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * glandula trachealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7473] - * tracheal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7473] - * tubular seromucous gland of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7473] + * glandula trachealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7473 ] + * tracheal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7473 ] + * tubular seromucous gland of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7473 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submucosa of trachea](../../UBERON/02/UBERON_0002202.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005303.md b/md/UBERON/03/UBERON_0005303.md index 768e6b8392..410d7a664d 100644 --- a/md/UBERON/03/UBERON_0005303.md +++ b/md/UBERON/03/UBERON_0005303.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005303 * *Label* = hypogastric nerve - * *Definition* = the transition between the superior hypogastric plexus and the inferior hypogastric plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypogastric_nerve] + * *Definition* = the transition between the superior hypogastric plexus and the inferior hypogastric plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypogastric_nerve ] * *Comment* = check plexus vs nerve. WP indicates it is a 'transition' ## Synonyms - * hypogastric nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001140] - * hypogastric plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18225] - * nervus hypogastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypogastric_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hypogastric nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001140 ] + * hypogastric plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18225 ] + * nervus hypogastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypogastric_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001140 * MESH:A08.800.050.050.400 * SCTID:181061006 - * UMLS:C1711378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypogastric_Nerve_Plexus] + * UMLS:C1711378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypogastric_Nerve_Plexus ] * Wikipedia:Hypogastric_nerve * http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005403.md b/md/UBERON/03/UBERON_0005403.md index c218dd1e22..08eee457de 100644 --- a/md/UBERON/03/UBERON_0005403.md +++ b/md/UBERON/03/UBERON_0005403.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005403 * *Label* = ventral striatum - * *Definition* = The ventral striatum is a portion of the striatum. It consists of the nucleus accumbens and the olfactory tubercle. Some sources also include the ventromedial parts of the caudate nucleus and putamen. It is considered a reward center. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_striatum] + * *Definition* = The ventral striatum is a portion of the striatum. It consists of the nucleus accumbens and the olfactory tubercle. Some sources also include the ventromedial parts of the caudate nucleus and putamen. It is considered a reward center. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_striatum ] ## Synonyms - * striatum ventral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:STRv] - * striatum ventrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004702] + * striatum ventral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:STRv ] + * striatum ventrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004702 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The term ventral striatum refers to a composite structure of the endbrain that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes the nucleus accumbens, the most ventral portions of the caudate nucleus and the putamen, the rostrolateral portion of the olfactory tubercle, the islands of Calleja and a rostral subcommissural portion of substantia innominata. The boundary between the ventral striatum and dorsal striatum is indistinct in sections stained for Nissl substance ( Heimer-1995 ). - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0005903.md b/md/UBERON/03/UBERON_0005903.md index e84fade3ee..b223fde8d6 100644 --- a/md/UBERON/03/UBERON_0005903.md +++ b/md/UBERON/03/UBERON_0005903.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005903 * *Label* = duct of seminal vesicle - * *Definition* = Each seminal vesicle consists of a single tube, coiled upon itself, and giving off several irregular cecal diverticula; the separate coils, as well as the diverticula, are connected together by fibrous tissue. When uncoiled, the tube is about the diameter of a quill, and varies in length from 10 to 15 cm.; it ends posteriorly in a cul-de-sac; its anterior extremity becomes constricted into a narrow straight duct called the excretory duct of seminal gland (or duct of the seminal vesicle), which joins with the corresponding ductus deferens to form the ejaculatory duct[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Excretory_duct_of_seminal_gland] + * *Definition* = Each seminal vesicle consists of a single tube, coiled upon itself, and giving off several irregular cecal diverticula; the separate coils, as well as the diverticula, are connected together by fibrous tissue. When uncoiled, the tube is about the diameter of a quill, and varies in length from 10 to 15 cm.; it ends posteriorly in a cul-de-sac; its anterior extremity becomes constricted into a narrow straight duct called the excretory duct of seminal gland (or duct of the seminal vesicle), which joins with the corresponding ductus deferens to form the ejaculatory duct[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Excretory_duct_of_seminal_gland ] ## Synonyms - * ductus excretorius (vesicula seminalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19473] - * ductus excretorius glandulae vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19473[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * excretory duct of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19473] - * seminal vesicle duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19473] - * ductus excretorius glandulae vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Excretory_duct_of_seminal_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus excretorius (vesicula seminalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19473 ] + * ductus excretorius glandulae vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19473, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * excretory duct of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19473 ] + * seminal vesicle duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19473 ] + * ductus excretorius glandulae vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Excretory_duct_of_seminal_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0006003.md b/md/UBERON/03/UBERON_0006003.md index 77d973816d..6fd2edfb73 100644 --- a/md/UBERON/03/UBERON_0006003.md +++ b/md/UBERON/03/UBERON_0006003.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006003 * *Label* = integumentary adnexa - * *Definition* = Anatomical structure embedded in or located in the integument that is part of the integumental system. Examples: hair, follicles, skin glands, claws, nails, feathers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://code.google.com/p/caro2/issues/detail?id=5] + * *Definition* = Anatomical structure embedded in or located in the integument that is part of the integumental system. Examples: hair, follicles, skin glands, claws, nails, feathers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://code.google.com/p/caro2/issues/detail?id=5 ] * *Comment* = editor note - add subclasses based on resolution of CARO tracker item. Also check: adnexal gland. Note that MP implicitly includes hypodermis. ## Synonyms - * adnexae cutis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skin_appendage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * skin adnexa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skin_appendage] - * skin appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skin_appendage] + * adnexae cutis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skin_appendage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * skin adnexa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skin_appendage ] + * skin appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skin_appendage ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails[MP:0010678] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0006203.md b/md/UBERON/03/UBERON_0006203.md index 266171b974..79fa28c308 100644 --- a/md/UBERON/03/UBERON_0006203.md +++ b/md/UBERON/03/UBERON_0006203.md @@ -6,15 +6,15 @@ ## Synonyms - * concha auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * concha of auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61006] - * concha of pinna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61006] - * concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61006] + * concha auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * concha of auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61006 ] + * concha of pinna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61006 ] + * concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61006 ] ## Cross-references * FMA:61006 - * UMLS:C0229316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Concha] + * UMLS:C0229316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Concha ] * ncithesaurus:Concha ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0006303.md b/md/UBERON/03/UBERON_0006303.md index 4f63d8a726..fe44afcf2c 100644 --- a/md/UBERON/03/UBERON_0006303.md +++ b/md/UBERON/03/UBERON_0006303.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0006603.md b/md/UBERON/03/UBERON_0006603.md index 6dab940e6d..943bef9444 100644 --- a/md/UBERON/03/UBERON_0006603.md +++ b/md/UBERON/03/UBERON_0006603.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0006803.md b/md/UBERON/03/UBERON_0006803.md index 27b821d7c3..4348694f3a 100644 --- a/md/UBERON/03/UBERON_0006803.md +++ b/md/UBERON/03/UBERON_0006803.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006803 * *Label* = obturator foramen - * *Definition* = The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_foramen] + * *Definition* = The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_foramen ] ## Synonyms - * foramen obturatorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16999[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen obturatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_foramen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * foramen obturatorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16999, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen obturatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_foramen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0000863 * FMA:16999 * SCTID:361777006 - * UMLS:C0223670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Foramen] + * UMLS:C0223670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Foramen ] * Wikipedia:Obturator_foramen * http://upload.wikimedia.org/wikipedia/commons/f/ff/Skeletpelvis-pubis.jpg * ncithesaurus:Obturator_Foramen @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small opening for the passage of the obturatorius nerve that perforates the pubis.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass pelvic girdle opening (AAO:0000767)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0007303.md b/md/UBERON/03/UBERON_0007303.md index 27adca959b..79ee5c64bc 100644 --- a/md/UBERON/03/UBERON_0007303.md +++ b/md/UBERON/03/UBERON_0007303.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007303 * *Label* = pharyngeal vasculature - * *Definition* = A vasculature that is part of a chordate pharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a chordate pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * branchial vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005003] + * branchial vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005003 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0007503.md b/md/UBERON/03/UBERON_0007503.md index 92db5d4854..6e3f88a905 100644 --- a/md/UBERON/03/UBERON_0007503.md +++ b/md/UBERON/03/UBERON_0007503.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007503 * *Label* = epithelial vesicle - * *Definition* = A closed epithelium with a lumen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A closed epithelium with a lumen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003119 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0007603.md b/md/UBERON/03/UBERON_0007603.md index f013ec9320..d3fdbed4e4 100644 --- a/md/UBERON/03/UBERON_0007603.md +++ b/md/UBERON/03/UBERON_0007603.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007603 * *Label* = stratified cuboidal epithelium - * *Definition* = Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_cuboidal_epithelium] + * *Definition* = Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_cuboidal_epithelium ] ## Synonyms - * epithelium stratificatum cuboideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63912] + * epithelium stratificatum cuboideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63912 ] ## Cross-references * FMA:63912 - * UMLS:C0932055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratified_Cuboidal_Epithelium] + * UMLS:C0932055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratified_Cuboidal_Epithelium ] * Wikipedia:Stratified_cuboidal_epithelium * http://upload.wikimedia.org/wikipedia/commons/1/18/Gray940.png * ncithesaurus:Stratified_Cuboidal_Epithelium @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0007703.md b/md/UBERON/03/UBERON_0007703.md index 1e832cb32a..58f82fccfd 100644 --- a/md/UBERON/03/UBERON_0007703.md +++ b/md/UBERON/03/UBERON_0007703.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007703 * *Label* = spinothalamic tract - * *Definition* = A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010017] + * *Definition* = A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010017 ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO][GO:0021963]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0007803.md b/md/UBERON/03/UBERON_0007803.md index 9672a2ef30..906865b60f 100644 --- a/md/UBERON/03/UBERON_0007803.md +++ b/md/UBERON/03/UBERON_0007803.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0008203.md b/md/UBERON/03/UBERON_0008203.md index 6819910d88..23ee5a8d34 100644 --- a/md/UBERON/03/UBERON_0008203.md +++ b/md/UBERON/03/UBERON_0008203.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008203 * *Label* = pelvic cavity - * *Definition* = The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded "house". It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_cavity] + * *Definition* = The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded "house". It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_cavity ] ## Synonyms - * space of pelvic compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9738] - * cavitas pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * space of pelvic compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9738 ] + * cavitas pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0008603.md b/md/UBERON/03/UBERON_0008603.md index 50c494948d..0b8c1954c2 100644 --- a/md/UBERON/03/UBERON_0008603.md +++ b/md/UBERON/03/UBERON_0008603.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008603 * *Label* = helicis major - * *Definition* = The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helicis_major] + * *Definition* = The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helicis_major ] ## Synonyms - * musculus helicis major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helicis_major[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus helicis major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helicis_major, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * helicis major muscle ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0008803.md b/md/UBERON/03/UBERON_0008803.md index 46279ff14a..967badbc5d 100644 --- a/md/UBERON/03/UBERON_0008803.md +++ b/md/UBERON/03/UBERON_0008803.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008803 * *Label* = skin of cheek - * *Definition* = A zone of skin that is part of a cheek. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a cheek. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cheek skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24759] + * cheek skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24759 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cheek](../../UBERON/67/UBERON_0001567.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0009203.md b/md/UBERON/03/UBERON_0009203.md index fe2c18bd75..04142eeb4d 100644 --- a/md/UBERON/03/UBERON_0009203.md +++ b/md/UBERON/03/UBERON_0009203.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009203 * *Label* = internasal suture - * *Definition* = a suture joining the nasal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internasal_suture] + * *Definition* = a suture joining the nasal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internasal_suture ] ## Synonyms * inter-nasal suture - * internasal suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52959] - * sutura internasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internasal_suture] - * nasal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097097] - * sutura internasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internasal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * internasal suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52959 ] + * sutura internasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internasal_suture ] + * nasal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097097 ] + * sutura internasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internasal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [facial suture](../../UBERON/99/UBERON_0009199.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0009503.md b/md/UBERON/03/UBERON_0009503.md index 28e63fae4f..3e49814488 100644 --- a/md/UBERON/03/UBERON_0009503.md +++ b/md/UBERON/03/UBERON_0009503.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009503 * *Label* = associated mesenchyme of hindgut - * *Definition* = Mesenchyme that is part of a hindgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a hindgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0009603.md b/md/UBERON/03/UBERON_0009603.md index a1ab46a9f9..59c3e8420f 100644 --- a/md/UBERON/03/UBERON_0009603.md +++ b/md/UBERON/03/UBERON_0009603.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009603 * *Label* = right lung associated mesenchyme - * *Definition* = Mesenchyme that is part of a right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0010303.md b/md/UBERON/03/UBERON_0010303.md index 0584aafbe5..87b4f9ced3 100644 --- a/md/UBERON/03/UBERON_0010303.md +++ b/md/UBERON/03/UBERON_0010303.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010303 * *Label* = extraembryonic epithelium - * *Definition* = An epithelium that is part of a extraembryonic structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a extraembryonic structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extraembryonic structure](../../UBERON/78/UBERON_0000478.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0010403.md b/md/UBERON/03/UBERON_0010403.md index 0183c934f9..3eeddf3422 100644 --- a/md/UBERON/03/UBERON_0010403.md +++ b/md/UBERON/03/UBERON_0010403.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010403 * *Label* = cortical marginal zone - * *Definition* = developing superficial cortical layer located just under the pia matter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = developing superficial cortical layer located just under the pia matter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] * *Comment* = TODO; add other marginal zones; determine correct developmental relationships ## Synonyms - * MZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000792] - * cortical marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000792] - * brain marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000812] + * MZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000792 ] + * cortical marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000792 ] + * brain marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000812 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0010703.md b/md/UBERON/03/UBERON_0010703.md index 9b4c4b956a..0da294e31e 100644 --- a/md/UBERON/03/UBERON_0010703.md +++ b/md/UBERON/03/UBERON_0010703.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010703 * *Label* = forelimb zeugopod skeleton - * *Definition* = The collection of all skeletal elements in an forelimb zeugopod region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in an forelimb zeugopod region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: adding proxinally_connected_to humerus causes inconsistencies - requires investigation ## Synonyms * antebrachial skeleton - * antebrachium skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni] - * anterior zeugopodium skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005011[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * antebrachium skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni ] + * anterior zeugopodium skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005011, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * fore epipodium skeleton - * forearm skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71199] - * skeleton of forearm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71199] - * wing zeugopod skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * anterior zeugopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005011[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] - * fore epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000200] - * forelimb epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005011[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * forearm skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71199 ] + * skeleton of forearm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71199 ] + * wing zeugopod skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * anterior zeugopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005011, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] + * fore epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000200 ] + * forelimb epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005011, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * forelimb epipodium skeleton * radius and ulna @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the forearm corresponding to the radius and ulna.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0010903.md b/md/UBERON/03/UBERON_0010903.md index 12543572d6..125e0791d2 100644 --- a/md/UBERON/03/UBERON_0010903.md +++ b/md/UBERON/03/UBERON_0010903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010903 * *Label* = tibiotarsus pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [tibiotarsus](../../UBERON/94/UBERON_0008194.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0011203.md b/md/UBERON/03/UBERON_0011203.md index ee314e6373..c8070af4e4 100644 --- a/md/UBERON/03/UBERON_0011203.md +++ b/md/UBERON/03/UBERON_0011203.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011203 * *Label* = urachus mesenchyme - * *Definition* = Mesenchyme that is part of a urachus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a urachus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urachus](../../UBERON/68/UBERON_0002068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0011303.md b/md/UBERON/03/UBERON_0011303.md index 367da6812d..f33962db8d 100644 --- a/md/UBERON/03/UBERON_0011303.md +++ b/md/UBERON/03/UBERON_0011303.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0011603.md b/md/UBERON/03/UBERON_0011603.md index 78b2019d09..17ee25cf23 100644 --- a/md/UBERON/03/UBERON_0011603.md +++ b/md/UBERON/03/UBERON_0011603.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011603 * *Label* = coronoid tooth - * *Definition* = Tooth that is attached to a coronoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Tooth that is attached to a coronoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * coronoid teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000104[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * coronoid teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000104, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [coronoid bone](../../UBERON/98/UBERON_0011598.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0011803.md b/md/UBERON/03/UBERON_0011803.md index 94ced84a34..efd07fe6e6 100644 --- a/md/UBERON/03/UBERON_0011803.md +++ b/md/UBERON/03/UBERON_0011803.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011803 * *Label* = feather bud, dermal component - * *Definition* = The part of the feather bud formed by a proliferation of dermal cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = The part of the feather bud formed by a proliferation of dermal cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Synonyms * dermal core of feather papilla * dermal papilla of feather bud * dermal papilla of feather papilla - * dermal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * dermal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather bud](../../UBERON/02/UBERON_0011802.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0011903.md b/md/UBERON/03/UBERON_0011903.md index 1b0105f9d2..879b4f4863 100644 --- a/md/UBERON/03/UBERON_0011903.md +++ b/md/UBERON/03/UBERON_0011903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011903 * *Label* = gizzard smooth muscle - * *Definition* = A smooth muscle tissue that is part of a gizzard. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A smooth muscle tissue that is part of a gizzard. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gizzard](../../UBERON/52/UBERON_0005052.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0012103.md b/md/UBERON/03/UBERON_0012103.md index 3ae5292fd7..b87ffd5eb0 100644 --- a/md/UBERON/03/UBERON_0012103.md +++ b/md/UBERON/03/UBERON_0012103.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012103 * *Label* = suspensory ligament of breast - * *Definition* = Cooper's ligaments (also known as the suspensory ligaments of Cooper and the fibrocollagenous septa) are connective tissue in the breast that helps maintain structural integrity. Transmission diffraction tomography can reveal the anatomy. Cooper's Suspensory Ligament should not be confused with the pectineal ligament (sometimes called the inguinal ligament of Cooper) which shares the same eponym. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] + * *Definition* = Cooper's ligaments (also known as the suspensory ligaments of Cooper and the fibrocollagenous septa) are connective tissue in the breast that helps maintain structural integrity. Transmission diffraction tomography can reveal the anatomy. Cooper's Suspensory Ligament should not be confused with the pectineal ligament (sometimes called the inguinal ligament of Cooper) which shares the same eponym. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] * *Comment* = Connects skin of mammary gland with deep fascia ## Synonyms - * retinaculum cutis mammae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * suspensory ligament of cooper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58040] - * suspensory retinaculum of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58040] - * Cooper's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] - * ligament of Cooper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] - * suspensory ligament of the breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] - * suspensory ligaments of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] - * suspensory ligaments of the breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments] + * retinaculum cutis mammae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * suspensory ligament of cooper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58040 ] + * suspensory retinaculum of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58040 ] + * Cooper's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] + * ligament of Cooper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] + * suspensory ligament of the breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] + * suspensory ligaments of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] + * suspensory ligaments of the breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0012303.md b/md/UBERON/03/UBERON_0012303.md index b7a0d7336e..2fe7b2de2b 100644 --- a/md/UBERON/03/UBERON_0012303.md +++ b/md/UBERON/03/UBERON_0012303.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012303 * *Label* = ureteral orifice - * *Definition* = the slit-like opening of either ureter into the bladder; normally, the two ureteral orifices are placed at the posterolateral angles of the urinary bladder trigone while the internal urethral orifice is placed at its anteroinferior angle (apex); wide gaping usually indicates vesicoureteral reflux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orifice_of_ureter] + * *Definition* = the slit-like opening of either ureter into the bladder; normally, the two ureteral orifices are placed at the posterolateral angles of the urinary bladder trigone while the internal urethral orifice is placed at its anteroinferior angle (apex); wide gaping usually indicates vesicoureteral reflux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orifice_of_ureter ] * *Comment* = TODO - add relationship to junction ## Synonyms - * Mercier's bar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77047] - * orifice of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77047] - * orificium ureteris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ostium ureteris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * ostium ureteris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ureteral meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783] - * ureteral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783] - * ureteric orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77047] - * ureteric orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783] - * ureteric ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77047] - * ureterovesical orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77047] - * ureterovesical orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011783] + * Mercier's bar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77047 ] + * orifice of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77047 ] + * orificium ureteris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ostium ureteris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * ostium ureteris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ureteral meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783 ] + * ureteral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783 ] + * ureteric orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77047 ] + * ureteric orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783 ] + * ureteric ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77047 ] + * ureterovesical orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77047 ] + * ureterovesical orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011783 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012303 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0012503.md b/md/UBERON/03/UBERON_0012503.md index 7307fd14a2..cfe600f731 100644 --- a/md/UBERON/03/UBERON_0012503.md +++ b/md/UBERON/03/UBERON_0012503.md @@ -6,7 +6,7 @@ ## Synonyms - * visceral peritoneum of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17073] + * visceral peritoneum of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17073 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fundus of stomach](../../UBERON/60/UBERON_0001160.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0013203.md b/md/UBERON/03/UBERON_0013203.md index 121ed4de65..2849e4ee3b 100644 --- a/md/UBERON/03/UBERON_0013203.md +++ b/md/UBERON/03/UBERON_0013203.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013203 * *Label* = hypogastrium - * *Definition* = The hypogastrium (or hypogastric region, or pubic region) is an area of the human abdomen located below the navel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypogastrium] + * *Definition* = The hypogastrium (or hypogastric region, or pubic region) is an area of the human abdomen located below the navel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypogastrium ] ## Synonyms - * hypogastric part of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14602] - * hypogastric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14602] - * pubic part of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14602] - * pubic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14602] - * regio pubica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * suprapubic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14602] - * hypogastric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypogastrium] - * pubic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypogastrium] + * hypogastric part of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14602 ] + * hypogastric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14602 ] + * pubic part of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14602 ] + * pubic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14602 ] + * regio pubica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * suprapubic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14602 ] + * hypogastric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypogastrium ] + * pubic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypogastrium ] ## Cross-references * CALOHA:TS-2346 * FMA:14602 * SCTID:182348003 - * UMLS:C0230189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypogastric_Region] + * UMLS:C0230189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypogastric_Region ] * Wikipedia:Hypogastrium * ncithesaurus:Hypogastric_Region @@ -43,8 +43,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hypogastric - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013203 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0013403.md b/md/UBERON/03/UBERON_0013403.md index 3401ffb3fb..aecd477ee6 100644 --- a/md/UBERON/03/UBERON_0013403.md +++ b/md/UBERON/03/UBERON_0013403.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013403 * *Label* = asterion of skull - * *Definition* = The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Asterion_(anatomy)] + * *Definition* = The asterion is the point on the skull corresponding to the posterior end of the parietomastoid suture. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Asterion_(anatomy) ] ## Synonyms - * asterion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Asterion_(anatomy)] + * asterion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Asterion_(anatomy) ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0013503.md b/md/UBERON/03/UBERON_0013503.md index 725ff53090..8ba4399e49 100644 --- a/md/UBERON/03/UBERON_0013503.md +++ b/md/UBERON/03/UBERON_0013503.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [caudal vertebra](../../UBERON/95/UBERON_0001095.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0013703.md b/md/UBERON/03/UBERON_0013703.md index df3882161b..51f9a6923b 100644 --- a/md/UBERON/03/UBERON_0013703.md +++ b/md/UBERON/03/UBERON_0013703.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013703 * *Label* = integumentary projection - * *Definition* = Anatomical projection that is part of the integumentl system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Anatomical projection that is part of the integumentl system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical projection](../../UBERON/29/UBERON_0004529.md) and [part_of](../../BFO/50/BFO_0000050.md) some [integumental system](../../UBERON/16/UBERON_0002416.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014403.md b/md/UBERON/03/UBERON_0014403.md index b2e25cdc44..b0c0ab8d2f 100644 --- a/md/UBERON/03/UBERON_0014403.md +++ b/md/UBERON/03/UBERON_0014403.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014403 * *Label* = male anatomical structure - * *Definition* = A part of the body present only in males. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000175[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A part of the body present only in males. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000175, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms - * male-specific [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WBbt:0005757] + * male-specific [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WBbt:0005757 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014403 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014503.md b/md/UBERON/03/UBERON_0014503.md index 138627bd63..5410963e1b 100644 --- a/md/UBERON/03/UBERON_0014503.md +++ b/md/UBERON/03/UBERON_0014503.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014503 * *Label* = proximal phalanx of digit 3 - * *Definition* = A proximal phalanx that is part of a autopod digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal phalanx that is part of a autopod digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014503 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014603.md b/md/UBERON/03/UBERON_0014603.md index 918d7225c6..99455c04d9 100644 --- a/md/UBERON/03/UBERON_0014603.md +++ b/md/UBERON/03/UBERON_0014603.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1419[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1419[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHm] - * paraventricular hypothalamic nucleus, magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHm] - * paraventricular nucleus of the hypothalamus, magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHm] + * paraventricular nucleus of the hypothalamus magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1419, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1419, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHm ] + * paraventricular hypothalamic nucleus, magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHm ] + * paraventricular nucleus of the hypothalamus, magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHm ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014603 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014703.md b/md/UBERON/03/UBERON_0014703.md index 5276e0e490..fbaf59a2f8 100644 --- a/md/UBERON/03/UBERON_0014703.md +++ b/md/UBERON/03/UBERON_0014703.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014703 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014803.md b/md/UBERON/03/UBERON_0014803.md index 828dcb2132..aa60d37bad 100644 --- a/md/UBERON/03/UBERON_0014803.md +++ b/md/UBERON/03/UBERON_0014803.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014803 * *Label* = superior nuchal line - * *Definition* = Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * *Definition* = Of the nuchal lines, the one below the highest nuchal line is the superior nuchal line. To it is attached the Occipitalis muscle, the Splenius capitis muscle, the trapezius muscle, and the Sternocleidomastoid muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014803 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0014903.md b/md/UBERON/03/UBERON_0014903.md index 70f790bfed..ece099a224 100644 --- a/md/UBERON/03/UBERON_0014903.md +++ b/md/UBERON/03/UBERON_0014903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014903 * *Label* = primordial vasculature - * *Definition* = A portion of tissue that will develop into vasculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005076[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = A portion of tissue that will develop into vasculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005076, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [vasculature](../../UBERON/49/UBERON_0002049.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014903 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0015003.md b/md/UBERON/03/UBERON_0015003.md index 2a2a342c2f..a1578ebaee 100644 --- a/md/UBERON/03/UBERON_0015003.md +++ b/md/UBERON/03/UBERON_0015003.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015003 * *Label* = ulna endochondral element - * *Definition* = A ulna bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A ulna bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * ulna element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * ulna skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * ulna element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * ulna skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [ulna cartilage element](../../UBERON/06/UBERON_0006306.md)or[ulna pre-cartilage condensation](../../UBERON/47/UBERON_0010847.md)or[ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_0015103.md b/md/UBERON/03/UBERON_0015103.md index 78358fc2a8..96f7abbb84 100644 --- a/md/UBERON/03/UBERON_0015103.md +++ b/md/UBERON/03/UBERON_0015103.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone 1 endochondral element](../../UBERON/02/UBERON_0015102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015103 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_1000003.md b/md/UBERON/03/UBERON_1000003.md index 77128525ba..6a2014c9a8 100644 --- a/md/UBERON/03/UBERON_1000003.md +++ b/md/UBERON/03/UBERON_1000003.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000003 * *Label* = dewlap - * *Definition* = A longitudinal flap of skin that hangs beneath the lower jaw or neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dewlap] + * *Definition* = A longitudinal flap of skin that hangs beneath the lower jaw or neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dewlap ] * *Comment* = Compare with: comb and wattle ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000003 + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_1500003.md b/md/UBERON/03/UBERON_1500003.md index 28fe0b0de9..01d6786a3d 100644 --- a/md/UBERON/03/UBERON_1500003.md +++ b/md/UBERON/03/UBERON_1500003.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1500003 * *Label* = lateral line canal lumen - * *Definition* = Anatomical space that contains a portion of the lateral line system. [[rdf-schema#comment](../../nt/rdf-schema#comment.md) = + PHENOSCAPE:MAH] + * *Definition* = Anatomical space that contains a portion of the lateral line system. [ [rdf-schema#comment](../../nt/rdf-schema#comment.md) = PHENOSCAPE:MAH ] * *Comment* = TO DO: think about definitions for spaces in bone, in which pass through nerves, muscles, tendons and are defined by them. ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000003.md b/md/UBERON/03/UBERON_2000003.md index f13ffe3100..5af1622fb3 100644 --- a/md/UBERON/03/UBERON_2000003.md +++ b/md/UBERON/03/UBERON_2000003.md @@ -7,7 +7,7 @@ ## Synonyms - * adaxial cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000003[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * adaxial cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000003, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_2000103.md b/md/UBERON/03/UBERON_2000103.md index e0f1144565..d17629dd42 100644 --- a/md/UBERON/03/UBERON_2000103.md +++ b/md/UBERON/03/UBERON_2000103.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000103 * *Label* = supramaxilla - * *Definition* = Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:ga_tg] + * *Definition* = Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:ga_tg ] * *Comment* = The supramaxilla may be present as one or two bones. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000203.md b/md/UBERON/03/UBERON_2000203.md index 0ff4da358d..2ca40dc030 100644 --- a/md/UBERON/03/UBERON_2000203.md +++ b/md/UBERON/03/UBERON_2000203.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000203 * *Label* = rhinosphenoid - * *Definition* = An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000503.md b/md/UBERON/03/UBERON_2000503.md index b702bbf63a..50321e6960 100644 --- a/md/UBERON/03/UBERON_2000503.md +++ b/md/UBERON/03/UBERON_2000503.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal oblique branchial muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000503[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * dorsal oblique branchial muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000503, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000603.md b/md/UBERON/03/UBERON_2000603.md index f181d7814a..3b2e497d06 100644 --- a/md/UBERON/03/UBERON_2000603.md +++ b/md/UBERON/03/UBERON_2000603.md @@ -6,7 +6,7 @@ ## Synonyms - * valvula cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000603] + * valvula cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000603 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000703.md b/md/UBERON/03/UBERON_2000703.md index 1444cc7a0f..edcc473f50 100644 --- a/md/UBERON/03/UBERON_2000703.md +++ b/md/UBERON/03/UBERON_2000703.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2000803.md b/md/UBERON/03/UBERON_2000803.md index 61876872e5..699fb230d5 100644 --- a/md/UBERON/03/UBERON_2000803.md +++ b/md/UBERON/03/UBERON_2000803.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000803 * *Label* = myotome somite 18 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001003.md b/md/UBERON/03/UBERON_2001003.md index bc2069346d..d725fd2b0f 100644 --- a/md/UBERON/03/UBERON_2001003.md +++ b/md/UBERON/03/UBERON_2001003.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001003[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001003, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_2001103.md b/md/UBERON/03/UBERON_2001103.md index 85f1345dc6..f6586413cb 100644 --- a/md/UBERON/03/UBERON_2001103.md +++ b/md/UBERON/03/UBERON_2001103.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001203.md b/md/UBERON/03/UBERON_2001203.md index a8bd976d11..ac252614f1 100644 --- a/md/UBERON/03/UBERON_2001203.md +++ b/md/UBERON/03/UBERON_2001203.md @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001775 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_2001303.md b/md/UBERON/03/UBERON_2001303.md index 758c640f87..ba0e31500d 100644 --- a/md/UBERON/03/UBERON_2001303.md +++ b/md/UBERON/03/UBERON_2001303.md @@ -6,8 +6,8 @@ ## Synonyms - * gX2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001303] - * nodose ganglion 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001303] + * gX2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001303 ] + * nodose ganglion 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001303 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001403.md b/md/UBERON/03/UBERON_2001403.md index 90bc24a042..a72230750b 100644 --- a/md/UBERON/03/UBERON_2001403.md +++ b/md/UBERON/03/UBERON_2001403.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001403 * *Label* = supraethmoid - * *Definition* = Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001603.md b/md/UBERON/03/UBERON_2001603.md index 3dc28c1752..cff56e12c9 100644 --- a/md/UBERON/03/UBERON_2001603.md +++ b/md/UBERON/03/UBERON_2001603.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001603 * *Label* = maxilla ascending process - * *Definition* = Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 ## Synonyms - * maxilla ascending arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001603] - * maxilla upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001603] + * maxilla ascending arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001603 ] + * maxilla upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001603 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001703.md b/md/UBERON/03/UBERON_2001703.md index d212576605..de109c6cf7 100644 --- a/md/UBERON/03/UBERON_2001703.md +++ b/md/UBERON/03/UBERON_2001703.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001703 * *Label* = infraorbital 8 - * *Definition* = Infraorbital that is the eighth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the eighth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001803.md b/md/UBERON/03/UBERON_2001803.md index 7426b49594..0bf5b3c6b4 100644 --- a/md/UBERON/03/UBERON_2001803.md +++ b/md/UBERON/03/UBERON_2001803.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001803 * *Label* = quadrate-metapterygoid joint - * *Definition* = Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [metapterygoid](../../UBERON/40/UBERON_2000240.md) and [core#connects](../../ts/core#connects.md) some [quadrate bone](../../UBERON/97/UBERON_0006597.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2001903.md b/md/UBERON/03/UBERON_2001903.md index 40eb580816..840914d5ca 100644 --- a/md/UBERON/03/UBERON_2001903.md +++ b/md/UBERON/03/UBERON_2001903.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2002003.md b/md/UBERON/03/UBERON_2002003.md index a6914a7586..67cd3294c7 100644 --- a/md/UBERON/03/UBERON_2002003.md +++ b/md/UBERON/03/UBERON_2002003.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002003 * *Label* = posterior dentation of dorsal fin spine 2 - * *Definition* = Process that is tooth or thorn-like and arising from the posteriorly-facing margin of the abducted dorsal-fin spine 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is tooth or thorn-like and arising from the posteriorly-facing margin of the abducted dorsal-fin spine 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal fin spine 2 posterior dentation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002003] - * posterior denticle of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002003] - * posterior serration of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002003] - * posterior thorn of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002003] - * posterior tooth of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002003] + * dorsal fin spine 2 posterior dentation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002003 ] + * posterior denticle of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002003 ] + * posterior serration of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002003 ] + * posterior thorn of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002003 ] + * posterior tooth of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002003 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2002103.md b/md/UBERON/03/UBERON_2002103.md index 1aba532a97..c23bddc056 100644 --- a/md/UBERON/03/UBERON_2002103.md +++ b/md/UBERON/03/UBERON_2002103.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002103 * *Label* = ceratobranchial series - * *Definition* = Anatomical cluster that consists of the ceratobranchial elements within an individual. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of the ceratobranchial elements within an individual. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2002203.md b/md/UBERON/03/UBERON_2002203.md index 36127559fa..b5e12b7518 100644 --- a/md/UBERON/03/UBERON_2002203.md +++ b/md/UBERON/03/UBERON_2002203.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_2005103.md b/md/UBERON/03/UBERON_2005103.md index 757a94d559..06e083e23a 100644 --- a/md/UBERON/03/UBERON_2005103.md +++ b/md/UBERON/03/UBERON_2005103.md @@ -6,7 +6,7 @@ ## Synonyms - * presumptive ventral fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005103] + * presumptive ventral fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005103 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2005203.md b/md/UBERON/03/UBERON_2005203.md index 088e5b4425..e38a9a5dad 100644 --- a/md/UBERON/03/UBERON_2005203.md +++ b/md/UBERON/03/UBERON_2005203.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 1 rostral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005203] + * rostral medial 1 rostral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005203 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/03/UBERON_2005303.md b/md/UBERON/03/UBERON_2005303.md index e3dc44433a..baf44b93d5 100644 --- a/md/UBERON/03/UBERON_2005303.md +++ b/md/UBERON/03/UBERON_2005303.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_2007003.md b/md/UBERON/03/UBERON_2007003.md index b27cc6cde7..2a3098b792 100644 --- a/md/UBERON/03/UBERON_2007003.md +++ b/md/UBERON/03/UBERON_2007003.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007003 * *Label* = ventro-caudal cluster - * *Definition* = Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * vcc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007003] - * ventrocaudal cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007003] + * vcc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007003 ] + * ventrocaudal cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007003 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3000003.md b/md/UBERON/03/UBERON_3000003.md index 66728be9a4..5bf52d4126 100644 --- a/md/UBERON/03/UBERON_3000003.md +++ b/md/UBERON/03/UBERON_3000003.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000003 * *Label* = alary process of premaxilla - * *Definition* = Dorsal process that extends toward the nasal bone. The posterior (inner) face of each alary process is concave and is invested dorsomedially by the superior prenasal cartilage and ventromedially by the inferior prenasal cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal process that extends toward the nasal bone. The posterior (inner) face of each alary process is concave and is invested dorsomedially by the superior prenasal cartilage and ventromedially by the inferior prenasal cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * dorsal process of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * pars dorsalis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * pars facialis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * pars frontalis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * pars prenasalis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * premaxillary spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * processus ascendens of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * processus frontalis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] - * processus nasalis of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000003] + * dorsal process of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * pars dorsalis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * pars facialis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * pars frontalis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * pars prenasalis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * premaxillary spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * processus ascendens of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * processus frontalis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] + * processus nasalis of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000003 ] ## Cross-references @@ -41,7 +41,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3000803.md b/md/UBERON/03/UBERON_3000803.md index e7ea3ef1a1..aa4b74b252 100644 --- a/md/UBERON/03/UBERON_3000803.md +++ b/md/UBERON/03/UBERON_3000803.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000803 * *Label* = sulcus articularis lateralis - * *Definition* = In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3000903.md b/md/UBERON/03/UBERON_3000903.md index 29d1de063d..895ec43692 100644 --- a/md/UBERON/03/UBERON_3000903.md +++ b/md/UBERON/03/UBERON_3000903.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000903 * *Label* = tibial crest - * *Definition* = Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3001003.md b/md/UBERON/03/UBERON_3001003.md index 2a270d699a..a2b8e7dcf0 100644 --- a/md/UBERON/03/UBERON_3001003.md +++ b/md/UBERON/03/UBERON_3001003.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3010103.md b/md/UBERON/03/UBERON_3010103.md index f67a588f65..ddee5c15d7 100644 --- a/md/UBERON/03/UBERON_3010103.md +++ b/md/UBERON/03/UBERON_3010103.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3010203.md b/md/UBERON/03/UBERON_3010203.md index 1cc467771b..2a19a452b9 100644 --- a/md/UBERON/03/UBERON_3010203.md +++ b/md/UBERON/03/UBERON_3010203.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3010303.md b/md/UBERON/03/UBERON_3010303.md index 682500e0a7..2164777f6e 100644 --- a/md/UBERON/03/UBERON_3010303.md +++ b/md/UBERON/03/UBERON_3010303.md @@ -6,7 +6,7 @@ ## Synonyms - * coelomic envelope [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010303] + * coelomic envelope [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010303 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3010503.md b/md/UBERON/03/UBERON_3010503.md index a9c50cd11f..65b01eb799 100644 --- a/md/UBERON/03/UBERON_3010503.md +++ b/md/UBERON/03/UBERON_3010503.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010503 * *Label* = oviduct artery - * *Definition* = One of three arteries which are part of the renal artery supplying blood to the anterior, middle, and posterior parts of the oviduct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = One of three arteries which are part of the renal artery supplying blood to the anterior, middle, and posterior parts of the oviduct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_3010603.md b/md/UBERON/03/UBERON_3010603.md index 53cfe8f08b..126674cc11 100644 --- a/md/UBERON/03/UBERON_3010603.md +++ b/md/UBERON/03/UBERON_3010603.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_4000003.md b/md/UBERON/03/UBERON_4000003.md index 36df655681..0968c424ae 100644 --- a/md/UBERON/03/UBERON_4000003.md +++ b/md/UBERON/03/UBERON_4000003.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000003 * *Label* = permanent cartilage - * *Definition* = Chondrogenic element that is composed of cartilage that is not replaced. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Chondrogenic element that is composed of cartilage that is not replaced. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_4100003.md b/md/UBERON/03/UBERON_4100003.md index 2a6f37bcfd..59c66b2a61 100644 --- a/md/UBERON/03/UBERON_4100003.md +++ b/md/UBERON/03/UBERON_4100003.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Nizar Ibrahim - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_4200003.md b/md/UBERON/03/UBERON_4200003.md index fb8a00e89b..250e809ddf 100644 --- a/md/UBERON/03/UBERON_4200003.md +++ b/md/UBERON/03/UBERON_4200003.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = A.Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_4200103.md b/md/UBERON/03/UBERON_4200103.md index f4f9f575ea..7294cdeb9c 100644 --- a/md/UBERON/03/UBERON_4200103.md +++ b/md/UBERON/03/UBERON_4200103.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/03/UBERON_4300003.md b/md/UBERON/03/UBERON_4300003.md index c0260bea5e..056649390f 100644 --- a/md/UBERON/03/UBERON_4300003.md +++ b/md/UBERON/03/UBERON_4300003.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0000004.md b/md/UBERON/04/UBERON_0000004.md index 03cc14e0a3..169cae5409 100644 --- a/md/UBERON/04/UBERON_0000004.md +++ b/md/UBERON/04/UBERON_0000004.md @@ -7,10 +7,10 @@ ## Synonyms - * nasal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000047[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * nasal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000047, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * nose * peripheral olfactory organ - * nasus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nose[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nasus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nose, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * proboscis ## Cross-references @@ -32,7 +32,7 @@ * OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA * SCTID:181195007 * TAO:0000047 - * UMLS:C0028429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nose] + * UMLS:C0028429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nose ] * Wikipedia:Nose * ZFA:0000047 * galen:Nose @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ that is the specialized structure of the face that contains olfactory neurons. The peripheral olfactory organ is paired[ZFA:0000047]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)[Wikipedia:Nose]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0000104.md b/md/UBERON/04/UBERON_0000104.md index 7a36d062d7..123bfb0d7d 100644 --- a/md/UBERON/04/UBERON_0000104.md +++ b/md/UBERON/04/UBERON_0000104.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000104 * *Label* = life cycle - * *Definition* = An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0000204.md b/md/UBERON/04/UBERON_0000204.md index 664161d2c7..0bd316df8a 100644 --- a/md/UBERON/04/UBERON_0000204.md +++ b/md/UBERON/04/UBERON_0000204.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000204 * *Label* = ventral part of telencephalon - * *Definition* = Dorsal part (base region) of the telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021544[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12626695] + * *Definition* = Dorsal part (base region) of the telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021544, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12626695 ] * *Comment* = AO notes: BTO term refers specifically to the avian structure ## Synonyms - * area ventralis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000304] - * subpallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021544[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000304] - * ventral telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000304] - * subpallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003401[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782] + * area ventralis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000304 ] + * subpallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021544, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000304 ] + * ventral telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000304 ] + * subpallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003401, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782 ] ## Cross-references @@ -41,8 +41,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T12:12:27Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0000304.md b/md/UBERON/04/UBERON_0000304.md index bd8c6801d7..f1c3c49bdf 100644 --- a/md/UBERON/04/UBERON_0000304.md +++ b/md/UBERON/04/UBERON_0000304.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000304 * *Label* = tendon sheath - * *Definition* = A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tendon_sheath] + * *Definition* = A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tendon_sheath ] * *Comment* = TODO: add layer relations. 'tendon sheath' GAT in FMA. ## Synonyms - * synovial tendon sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45087] - * vagina tendinis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tendon_sheath[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * synovial tendon sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45087 ] + * vagina tendinis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tendon_sheath, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:45087 * FMA:76715 * SCTID:361885006 - * UMLS:C0224856 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tendon_Sheath] + * UMLS:C0224856 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tendon_Sheath ] * Wikipedia:Tendon_sheath * ncithesaurus:Tendon_Sheath @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001004.md b/md/UBERON/04/UBERON_0001004.md index 508f2b36a4..6a3ac0e952 100644 --- a/md/UBERON/04/UBERON_0001004.md +++ b/md/UBERON/04/UBERON_0001004.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001004 * *Label* = respiratory system - * *Definition* = Functional system which consists of structures involved in respiration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Respiratory_system] + * *Definition* = Functional system which consists of structures involved in respiration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Respiratory_system ] ## Synonyms * apparatus respiratorius * respiratory system - * Atmungssystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000203] - * apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000203] - * systema respiratorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Respiratory_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Atmungssystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000203 ] + * apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000203 ] + * systema respiratorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Respiratory_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,7 +32,7 @@ * OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA * SCTID:278197002 * TAO:0000272 - * UMLS:C0035237 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_System] + * UMLS:C0035237 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_System ] * VHOG:0000202 * Wikipedia:Respiratory_system * XAO:0000117 @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable_of](../../RO/15/RO_0002215.md) some [respiratory gaseous exchange](../../GO/85/GO_0007585.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001104.md b/md/UBERON/04/UBERON_0001104.md index de181d8679..6aafae79c1 100644 --- a/md/UBERON/04/UBERON_0001104.md +++ b/md/UBERON/04/UBERON_0001104.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001104 * *Label* = anterior jugular vein - * *Definition* = The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_jugular_vein] + * *Definition* = The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_jugular_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * anterior external jugular vein - * vena jugularis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_jugular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena jugularis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_jugular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:13318 * MA:0002155 * SCTID:65478008 - * UMLS:C0226545 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Jugular_Vein] + * UMLS:C0226545 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Jugular_Vein ] * Wikipedia:Anterior_jugular_vein * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001204.md b/md/UBERON/04/UBERON_0001204.md index 53abf72b5f..cc0098c5ec 100644 --- a/md/UBERON/04/UBERON_0001204.md +++ b/md/UBERON/04/UBERON_0001204.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001204 * *Label* = mucosa of small intestine - * *Definition* = A mucosa that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * mucosa of organ of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of small intestine - * organ mucosa of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * organ mucosa of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal mucosa * small intestine mucosa - * small intestine mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestine mucous membrane - * small intestine organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica mucosa (intestinum tenue) - * tunica mucosa intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14933[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica mucosa intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14933, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,7 +34,7 @@ * FMA:14933 * MA:0002686 * SCTID:362144000 - * UMLS:C0227261 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Mucosa] + * UMLS:C0227261 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Mucosa ] * ncithesaurus:Small_Intestinal_Mucosa ## Subsets @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001304.md b/md/UBERON/04/UBERON_0001304.md index d883bb85af..3761245a22 100644 --- a/md/UBERON/04/UBERON_0001304.md +++ b/md/UBERON/04/UBERON_0001304.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001304 * *Label* = germinal epithelium of ovary - * *Definition* = layer of simple cuboidal cells covering surface of ovary[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16923182[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(female)[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Talk:Germinal_epithelium_%28female%29] + * *Definition* = layer of simple cuboidal cells covering surface of ovary[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16923182, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(female), [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Talk:Germinal_epithelium_%28female%29 ] * *Comment* = Controversial - see article. Requires expert input. Also check BTO placement ## Synonyms * epithelium superficiale (ovarium) - * germinal epithelium (female) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(female)] - * ovarian surface epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004483] + * germinal epithelium (female) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(female) ] + * ovarian surface epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004483 ] * ovary germinal epithelium * surface epithelium of ovary - * female coelomic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17384] + * female coelomic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17384 ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001711 * RETIRED_EHDAA2:0001361 * SCTID:258308007 - * UMLS:C0227875 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Surface_Epithelium] + * UMLS:C0227875 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Surface_Epithelium ] * VHOG:0000630 * Wikipedia:Germinal_epithelium_(female) * ncithesaurus:Ovarian_Surface_Epithelium @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [capsule of ovary](../../UBERON/07/UBERON_0001307.md) and [simple cuboidal epithelium](../../UBERON/84/UBERON_0000484.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001404.md b/md/UBERON/04/UBERON_0001404.md index cf3bdff100..8655c74ad0 100644 --- a/md/UBERON/04/UBERON_0001404.md +++ b/md/UBERON/04/UBERON_0001404.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001404 * *Label* = radial artery - * *Definition* = In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Radial_artery] + * *Definition* = In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Radial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * A. Radialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Radial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * A. Radialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Radial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.114.740 * OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA * SCTID:181332001 - * UMLS:C0162857 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Radial_Artery] + * UMLS:C0162857 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Radial_Artery ] * Wikipedia:Radial_artery * galen:RadialArtery * http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001504.md b/md/UBERON/04/UBERON_0001504.md index df3e0b3bbb..e9de487b76 100644 --- a/md/UBERON/04/UBERON_0001504.md +++ b/md/UBERON/04/UBERON_0001504.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001504 * *Label* = lumbrical muscle of pes - * *Definition* = The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the pes; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbricals_of_the_foot] + * *Definition* = The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the pes; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbricals_of_the_foot ] ## Synonyms - * foot lumbrical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37453] - * foot lumbrical muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002305] - * lumbrical of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37453] + * foot lumbrical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37453 ] + * foot lumbrical muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002305 ] + * lumbrical of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37453 ] * pes lumbrical * pes lumbrical muscle @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001604.md b/md/UBERON/04/UBERON_0001604.md index 2fc44e8d0b..0b13962acd 100644 --- a/md/UBERON/04/UBERON_0001604.md +++ b/md/UBERON/04/UBERON_0001604.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001604 * *Label* = levator palpebrae superioris - * *Definition* = The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_palpebrae_superioris] + * *Definition* = The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_palpebrae_superioris ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:49041 * MA:0001272 * SCTID:244774006 - * UMLS:C0224134 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Levator_Palpebrae_Superioris] + * UMLS:C0224134 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Levator_Palpebrae_Superioris ] * Wikipedia:Levator_palpebrae_superioris * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png * ncithesaurus:Levator_Palpebrae_Superioris @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001704.md b/md/UBERON/04/UBERON_0001704.md index d5f743f6e1..a726a69f9a 100644 --- a/md/UBERON/04/UBERON_0001704.md +++ b/md/UBERON/04/UBERON_0001704.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001704 * *Label* = obsolete viscerocranium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_skeleton] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_skeleton ] * *Comment* = This class was made obsolete as it conflated the facial skeleton with the splanchnocranium. The facial skeleton includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it) (See also notes for ethmoid bone). The splanchoncranium is the endoskeleton derived from pharyngeal arches. ## Synonyms @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0008895 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011156 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001704 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_0001804.md b/md/UBERON/04/UBERON_0001804.md index a93d26a431..a425fc9f1f 100644 --- a/md/UBERON/04/UBERON_0001804.md +++ b/md/UBERON/04/UBERON_0001804.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001804 * *Label* = capsule of lens - * *Definition* = a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_lens[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_(anatomy)#Lens_capsule] + * *Definition* = a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_lens, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_(anatomy)#Lens_capsule ] ## Synonyms - * capsula lentis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * capsula lentis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * lens capsule ## Cross-references @@ -17,7 +17,7 @@ * FMA:58881 * MA:0001300 * SCTID:244500004 - * UMLS:C0229232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lens_Capsule] + * UMLS:C0229232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lens_Capsule ] * VHOG:0000550 * Wikipedia:Lens_(anatomy)#Lens_capsule * ZFA:0005574 @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [lens of camera-type eye](../../UBERON/65/UBERON_0000965.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The transparent membrane which surrounds the lens of the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0001904.md b/md/UBERON/04/UBERON_0001904.md index 8c9be05628..79cbeb094f 100644 --- a/md/UBERON/04/UBERON_0001904.md +++ b/md/UBERON/04/UBERON_0001904.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001904 * *Label* = habenula - * *Definition* = A segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Habenula[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Habenula, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - add separate term for nucleus (e.g. BTO:0003685 habenular nucleus) ## Synonyms - * Hb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1611[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ganglion intercrurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion interpedunculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Hb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1611, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ganglion intercrurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion interpedunculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * habenulae * habenular nuclei * habenular nucleus - * nuclei habenulares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus habenularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pineal peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003684] + * nuclei habenulares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus habenularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pineal peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003684 ] ## Cross-references @@ -29,10 +29,10 @@ * MA:0000830 * MESH:A08.186.211.577.200.360 * NIF_GrossAnatomy:birnlex_1611 - * NeuroNames:294 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1611] + * NeuroNames:294 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1611 ] * SCTID:362389008 * TAO:0000213 - * UMLS:C0152362 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1611] + * UMLS:C0152362 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1611 ] * Wikipedia:Habenula * ZFA:0000213 * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = habenular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002004.md b/md/UBERON/04/UBERON_0002004.md index 15b94ada7e..7c5d338315 100644 --- a/md/UBERON/04/UBERON_0002004.md +++ b/md/UBERON/04/UBERON_0002004.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002104.md b/md/UBERON/04/UBERON_0002104.md index cabaf592ad..4365b90ed0 100644 --- a/md/UBERON/04/UBERON_0002104.md +++ b/md/UBERON/04/UBERON_0002104.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002104 * *Label* = visual system - * *Definition* = The sensory system subserving the sense of vision. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:FMAID_7191] + * *Definition* = The sensory system subserving the sense of vision. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:FMAID_7191 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * photosensory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000140] + * photosensory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000140 ] * visual organ system ## Cross-references @@ -21,7 +21,7 @@ * OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA * SCTID:281831001 * TAO:0001127 - * UMLS:C0587900 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Visual_System] + * UMLS:C0587900 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Visual_System ] * Wikipedia:Visual_system * XAO:0003198 * ZFA:0001127 @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory system used for sight.[AAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007036 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002204.md b/md/UBERON/04/UBERON_0002204.md index 519b36461d..f926f4e265 100644 --- a/md/UBERON/04/UBERON_0002204.md +++ b/md/UBERON/04/UBERON_0002204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002204 * *Label* = musculoskeletal system - * *Definition* = Anatomical system that consists of the muscular and skeletal systems. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000031[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Anatomical system that consists of the muscular and skeletal systems. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000031, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -21,7 +21,7 @@ * MESH:A02 * OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g * SCTID:278858007 - * UMLS:C0026860 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Musculoskeletal_System] + * UMLS:C0026860 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Musculoskeletal_System ] * VHOG:0001275 * VSAO:0000031 * Wikipedia:Musculoskeletal_system @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = musculoskeletal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002304.md b/md/UBERON/04/UBERON_0002304.md index 2cb6a42fa4..13ab1c8ea9 100644 --- a/md/UBERON/04/UBERON_0002304.md +++ b/md/UBERON/04/UBERON_0002304.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002404.md b/md/UBERON/04/UBERON_0002404.md index 2f364a9abd..c192f84b5f 100644 --- a/md/UBERON/04/UBERON_0002404.md +++ b/md/UBERON/04/UBERON_0002404.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002404 * *Label* = transversus thoracis - * *Definition* = The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_thoracis] + * *Definition* = The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_thoracis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:9760 * MA:0002397 * SCTID:244933000 - * UMLS:C1744608 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transversus_Thoracis] + * UMLS:C1744608 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transversus_Thoracis ] * Wikipedia:Transversus_thoracis * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png * ncithesaurus:Transversus_Thoracis @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002504.md b/md/UBERON/04/UBERON_0002504.md index 37f6d726d8..1c6a3e8274 100644 --- a/md/UBERON/04/UBERON_0002504.md +++ b/md/UBERON/04/UBERON_0002504.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002504 * *Label* = lesser trochanter - * *Definition* = The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_trochanter] + * *Definition* = The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_trochanter ] ## Synonyms * lesser trochanter of femur - * trochanter minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_trochanter[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trochanter minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_trochanter, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:32853 * MA:0002823 * SCTID:182051002 - * UMLS:C0223866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lesser_Trochanter] + * UMLS:C0223866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lesser_Trochanter ] * Wikipedia:Lesser_trochanter * galen:LesserTrochanter * http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002604.md b/md/UBERON/04/UBERON_0002604.md index 68f03229de..14bcb67208 100644 --- a/md/UBERON/04/UBERON_0002604.md +++ b/md/UBERON/04/UBERON_0002604.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002604 * *Label* = ventral nucleus of lateral lemniscus - * *Definition* = The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] + * *Definition* = The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus ] ## Synonyms - * anterior nucleus of lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72484] - * nucleus anterior lemnisci lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72484[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the lateral lemniscus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:NLLv] - * ventral nucleus of the lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72484] - * nucleus lemnisci lateralis pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:592[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus lemnisci lateralis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:592[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the lateral lemniscus ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NLLv] + * anterior nucleus of lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72484 ] + * nucleus anterior lemnisci lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72484, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the lateral lemniscus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:NLLv ] + * ventral nucleus of the lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72484 ] + * nucleus lemnisci lateralis pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:592, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus lemnisci lateralis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:592, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the lateral lemniscus ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NLLv ] ## Cross-references @@ -23,8 +23,8 @@ * BM:LLV * FMA:72484 * NIF_GrossAnatomy:birnlex_1140 - * NeuroNames:592 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1140] - * UMLS:C0175444 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1140] + * NeuroNames:592 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1140 ] + * UMLS:C0175444 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1140 ] * Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus * http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002704.md b/md/UBERON/04/UBERON_0002704.md index 9326119585..6ff8fbd6b3 100644 --- a/md/UBERON/04/UBERON_0002704.md +++ b/md/UBERON/04/UBERON_0002704.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002704 * *Label* = metathalamus - * *Definition* = The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metathalamus] + * *Definition* = The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metathalamus ] * *Comment* = note we follow FMA in making this a subtype of nucleus, but in fact it is a group containing two nuclei ## Synonyms - * geniculate group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62023] - * geniculate thalamic group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000868] - * nuclei metathalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1461] - * MTh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1461[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Geniculate group of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GENd] - * Geniculate thalamic nuclear group (metathalamus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GENd] - * corpora geniculata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metathalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * geniculate group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62023 ] + * geniculate thalamic group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000868 ] + * nuclei metathalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1461 ] + * MTh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1461, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Geniculate group of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GENd ] + * Geniculate thalamic nuclear group (metathalamus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GENd ] + * corpora geniculata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metathalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * FMA:62023 * MA:0000868 * NIF_GrossAnatomy:birnlex_1461 - * NeuroNames:351 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1461] + * NeuroNames:351 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1461 ] * SCTID:361550004 * Wikipedia:Metathalamus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002804.md b/md/UBERON/04/UBERON_0002804.md index be3726e212..ed35a69fb6 100644 --- a/md/UBERON/04/UBERON_0002804.md +++ b/md/UBERON/04/UBERON_0002804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002804 * *Label* = left limbic lobe - * *Definition* = A limbic lobe that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limbic lobe that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limbic lobe](../../UBERON/00/UBERON_0002600.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0002904.md b/md/UBERON/04/UBERON_0002904.md index e2a4f7b296..5e5c607178 100644 --- a/md/UBERON/04/UBERON_0002904.md +++ b/md/UBERON/04/UBERON_0002904.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002904 * *Label* = lateral occipital sulcus - * *Definition* = In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_occipital_sulcus] + * *Definition* = In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_occipital_sulcus ] ## Synonyms - * sulcus occipitalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4018] - * locs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4018[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral occipital sulcus (H) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:143] + * sulcus occipitalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4018 ] + * locs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4018, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral occipital sulcus (H) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:143 ] ## Cross-references * BAMS:locs * FMA:83785 * NIF_GrossAnatomy:birnlex_4018 - * NeuroNames:143 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4018] + * NeuroNames:143 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4018 ] * SCTID:369219003 - * UMLS:C0228229 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4018] - * UMLS:C0228229 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral-occipital_Sulcus] - * UMLS:C1289641 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4018] + * UMLS:C0228229 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4018 ] + * UMLS:C0228229 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral-occipital_Sulcus ] + * UMLS:C1289641 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4018 ] * Wikipedia:Lateral_occipital_sulcus * http://upload.wikimedia.org/wikipedia/commons/2/2c/Gray727_lateral-occipital_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Gray727_lateral-occipital_sulcus.svg/200px-Gray727_lateral-occipital_sulcus.svg.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003004.md b/md/UBERON/04/UBERON_0003004.md index 88d7c822af..075b161160 100644 --- a/md/UBERON/04/UBERON_0003004.md +++ b/md/UBERON/04/UBERON_0003004.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003004 * *Label* = median raphe nucleus - * *Definition* = The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_raphe_nucleus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855] + * *Definition* = The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_raphe_nucleus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855 ] * *Comment* = TODO: The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 )[http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=h&ID=1391] ## Synonyms @@ -11,14 +11,14 @@ * MRN * cell group b8 * medial raphe nucleus - * median nucleus of the raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72465] - * nucleus raphes medianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72465[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72465] - * superior central nucleus raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72465] - * superior central tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72465] - * central superior nucleus of the raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CS] - * nucleus centralis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_raphe_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior central nucleus raphC) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CS] + * median nucleus of the raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72465 ] + * nucleus raphes medianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72465, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72465 ] + * superior central nucleus raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72465 ] + * superior central tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72465 ] + * central superior nucleus of the raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CS ] + * nucleus centralis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_raphe_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior central nucleus raphC) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CS ] ## Cross-references @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003104.md b/md/UBERON/04/UBERON_0003104.md index ff3c1f54d1..6d03bf40a9 100644 --- a/md/UBERON/04/UBERON_0003104.md +++ b/md/UBERON/04/UBERON_0003104.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003104 * *Label* = mesenchyme - * *Definition* = Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001393[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesenchyme[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001393, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesenchyme, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editors notes: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense ## Synonyms @@ -12,7 +12,7 @@ * mesenchyme tissue * portion of mesenchymal tissue * portion of mesenchyme tissue - * mesenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesenchyme[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mesenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesenchyme, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * EHDAA2:0003145 * EV:0100007 * TAO:0000393 - * UMLS:C0162415 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesenchyme] + * UMLS:C0162415 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesenchyme ] * VHOG:0000170 * Wikipedia:Mesenchyme * XAO:0003046 @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesenchymal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003204.md b/md/UBERON/04/UBERON_0003204.md index 39c97806c5..87f24eae0a 100644 --- a/md/UBERON/04/UBERON_0003204.md +++ b/md/UBERON/04/UBERON_0003204.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00005750 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000301 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003204 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_0003304.md b/md/UBERON/04/UBERON_0003304.md index d249a7bbff..0ea845fdff 100644 --- a/md/UBERON/04/UBERON_0003304.md +++ b/md/UBERON/04/UBERON_0003304.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003304 * *Label* = mesoderm blood island - * *Definition* = A blood island that is part of a mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood island that is part of a mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in EHDAA2, gives rise to blood and dorsal aorta ## Synonyms - * mesoderm blood islands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003241[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * mesenchyme blood island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesoderm blood islands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003241, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * mesenchyme blood island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood island](../../UBERON/61/UBERON_0003061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003305 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003404.md b/md/UBERON/04/UBERON_0003404.md index 72b01bb8bf..283ddfe25a 100644 --- a/md/UBERON/04/UBERON_0003404.md +++ b/md/UBERON/04/UBERON_0003404.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003404 * *Label* = lobar bronchus of right lung - * *Definition* = A lobar bronchus that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * right lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003504.md b/md/UBERON/04/UBERON_0003504.md index deaef481c2..3ef15d3f96 100644 --- a/md/UBERON/04/UBERON_0003504.md +++ b/md/UBERON/04/UBERON_0003504.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003504 * *Label* = respiratory system blood vessel - * *Definition* = A blood vessel that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003604.md b/md/UBERON/04/UBERON_0003604.md index 484bccbab1..4bcaa4988f 100644 --- a/md/UBERON/04/UBERON_0003604.md +++ b/md/UBERON/04/UBERON_0003604.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003604 * *Label* = trachea cartilage - * *Definition* = The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheal_rings] + * *Definition* = The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheal_rings ] * *Comment* = Editor notes: check whether to classify as part of splanchoncranium ## Synonyms - * cartilage of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous ring of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18699] - * cartilaginous trachea cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilago trachealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7434] - * tracheal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7434] - * windpipe cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of the trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheal_rings] - * cartilagines tracheales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheal_rings[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ring of the trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheal_rings] + * cartilage of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous ring of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18699 ] + * cartilaginous trachea cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilago trachealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7434 ] + * tracheal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7434 ] + * windpipe cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of the trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheal_rings ] + * cartilagines tracheales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheal_rings, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ring of the trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheal_rings ] * trachea ring - * tracheal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheal_rings] + * tracheal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheal_rings ] ## Cross-references @@ -27,7 +27,7 @@ * FMA:7434 * MA:0001857 * SCTID:278979006 - * UMLS:C1710456 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Cartilage] + * UMLS:C1710456 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Cartilage ] * Wikipedia:Tracheal_rings * http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png * ncithesaurus:Trachea_Cartilage @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003704.md b/md/UBERON/04/UBERON_0003704.md index ce46967993..672f18ffee 100644 --- a/md/UBERON/04/UBERON_0003704.md +++ b/md/UBERON/04/UBERON_0003704.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003704 * *Label* = intrahepatic bile duct - * *Definition* = Passages within the liver for the conveyance of bile. Includes right and left hepatic ducts even though these may join outside the liver to form the common hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.159.183.158] + * *Definition* = Passages within the liver for the conveyance of bile. Includes right and left hepatic ducts even though these may join outside the liver to form the common hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.159.183.158 ] ## Synonyms - * bile duct intrahepatic part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001630] + * bile duct intrahepatic part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001630 ] * intrahepatic biliary system ## Cross-references @@ -18,7 +18,7 @@ * MESH:A03.159.183.158 * SCTID:362193005 * TAO:0005169 - * UMLS:C0005401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intrahepatic_Bile_Duct] + * UMLS:C0005401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intrahepatic_Bile_Duct ] * ZFA:0005169 * ncithesaurus:Intrahepatic_Bile_Duct @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bile duct](../../UBERON/94/UBERON_0002394.md) and [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0003904.md b/md/UBERON/04/UBERON_0003904.md index 89a716652d..d27c9fd21e 100644 --- a/md/UBERON/04/UBERON_0003904.md +++ b/md/UBERON/04/UBERON_0003904.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003904 * *Label* = bursal plica - * *Definition* = Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * *Definition* = Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] ## Synonyms * bursal fold - * bursal plicae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * bursal plicae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004004.md b/md/UBERON/04/UBERON_0004004.md index e4fa28745f..27f315408e 100644 --- a/md/UBERON/04/UBERON_0004004.md +++ b/md/UBERON/04/UBERON_0004004.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004004 * *Label* = cerebellum lobule - * *Definition* = one of the the ten gyri of the cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009964] + * *Definition* = one of the the ten gyri of the cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009964 ] ## Synonyms - * lobular parts of the cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1084] + * lobular parts of the cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1084 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004104.md b/md/UBERON/04/UBERON_0004104.md index 8ac9a319f7..3dd2e70fad 100644 --- a/md/UBERON/04/UBERON_0004104.md +++ b/md/UBERON/04/UBERON_0004104.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004104 * *Label* = hairline - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0009553] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0009553 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004204.md b/md/UBERON/04/UBERON_0004204.md index 02abe4838d..7201b17e94 100644 --- a/md/UBERON/04/UBERON_0004204.md +++ b/md/UBERON/04/UBERON_0004204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004204 * *Label* = outer medullary collecting duct - * *Definition* = The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072060] + * *Definition* = The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072060 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004404.md b/md/UBERON/04/UBERON_0004404.md index 8e78e3c833..07410fe15e 100644 --- a/md/UBERON/04/UBERON_0004404.md +++ b/md/UBERON/04/UBERON_0004404.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004404 * *Label* = distal epiphysis of humerus - * *Definition* = A distal epiphysis that is part of a humerus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a humerus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32826] - * lower end of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32826] + * distal end of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32826 ] + * lower end of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32826 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [humerus](../../UBERON/76/UBERON_0000976.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004504.md b/md/UBERON/04/UBERON_0004504.md index 571d36326f..456c316f07 100644 --- a/md/UBERON/04/UBERON_0004504.md +++ b/md/UBERON/04/UBERON_0004504.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004504 * *Label* = skeletal muscle tissue of mylohyoid - * *Definition* = A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mylohyoid muscle](../../UBERON/64/UBERON_0001564.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004604.md b/md/UBERON/04/UBERON_0004604.md index aa045b90d8..f8b9719cbc 100644 --- a/md/UBERON/04/UBERON_0004604.md +++ b/md/UBERON/04/UBERON_0004604.md @@ -7,14 +7,15 @@ ## Synonyms - * fourth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7749] + * costa IV [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fourth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7749 ] ## Cross-references * FMA:7749 * MA:0001404 * SCTID:244659000 - * UMLS:C1709951 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_4] + * UMLS:C1709951 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_4 ] * ncithesaurus:Rib_4 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004704.md b/md/UBERON/04/UBERON_0004704.md index 55f5c5fec1..e23bcf28a9 100644 --- a/md/UBERON/04/UBERON_0004704.md +++ b/md/UBERON/04/UBERON_0004704.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004704 * *Label* = bone fossa - * *Definition* = a depression or hollow in a bone[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fossa#Anatomy] + * *Definition* = a depression or hollow in a bone[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fossa#Anatomy ] * *Comment* = AO notes: General Anatomical term in FMA; not restricted to bone in ncit; surface feature in VSAO; note that entities named 'fossa' are cavities in FMA, hence placement here ## Synonyms * fossa - * concavities [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * concavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743] - * depression [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743] - * depressions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fossae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001743] + * concavities [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * concavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743 ] + * depression [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743 ] + * depressions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fossae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001743 ] ## Cross-references * AAO:0010439 * FMA:45791 * TAO:0001743 - * UMLS:C0836913 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fossa] + * UMLS:C0836913 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fossa ] * VSAO:0005069 * Wikipedia:Fossa#Anatomy * ZFA:0005388 @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical space that is a concavity, shallow depression, or groove on a bone.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004804.md b/md/UBERON/04/UBERON_0004804.md index 3c2bbb04f8..700c821e97 100644 --- a/md/UBERON/04/UBERON_0004804.md +++ b/md/UBERON/04/UBERON_0004804.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004804 * *Label* = oviduct epithelium - * *Definition* = An epithelium that is part of a oviduct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a oviduct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label ## Synonyms - * epithelial tissue of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62016] - * oviduct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62016 ] + * oviduct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oviduct](../../UBERON/93/UBERON_0000993.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0004904.md b/md/UBERON/04/UBERON_0004904.md index dcc668f141..0e1e7f03d2 100644 --- a/md/UBERON/04/UBERON_0004904.md +++ b/md/UBERON/04/UBERON_0004904.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004904 * *Label* = nerve connecting eye with brain - * *Definition* = A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000966] + * *Definition* = A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000966 ] * *Comment* = for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) ## Synonyms * optic nerve (generic) - * optic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000966] - * Onuf nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ON] - * olfactory nerve layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ON] + * optic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000966 ] + * Onuf nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ON ] + * olfactory nerve layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ON ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [brain](../../UBERON/55/UBERON_0000955.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [photoreceptor array](../../UBERON/88/UBERON_0005388.md) and [nerve](../../UBERON/21/UBERON_0001021.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005004.md b/md/UBERON/04/UBERON_0005004.md index 6c728e9b6b..bca1587de1 100644 --- a/md/UBERON/04/UBERON_0005004.md +++ b/md/UBERON/04/UBERON_0005004.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005004 * *Label* = mucosa of right ureter - * *Definition* = A mucosa that is part of a right ureter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a right ureter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of right ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right ureter mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right ureter mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right ureter mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right ureter organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right ureteral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17806] + * mucosa of organ of right ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right ureter mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right ureter mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right ureter mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right ureter organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right ureteral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17806 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right ureter](../../UBERON/22/UBERON_0001222.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005104.md b/md/UBERON/04/UBERON_0005104.md index de217d7725..5ea480dfd7 100644 --- a/md/UBERON/04/UBERON_0005104.md +++ b/md/UBERON/04/UBERON_0005104.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005104 * *Label* = anterior mesonephric tubule - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072165] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072165 ] ## Synonyms - * cranial mesonephric tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30562] + * cranial mesonephric tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30562 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005204.md b/md/UBERON/04/UBERON_0005204.md index 6963f51377..6175dbde70 100644 --- a/md/UBERON/04/UBERON_0005204.md +++ b/md/UBERON/04/UBERON_0005204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005204 * *Label* = larynx submucosa gland - * *Definition* = A gland that is part of a larynx submucosa [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a larynx submucosa [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx submucosa](../../UBERON/78/UBERON_0004778.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005304.md b/md/UBERON/04/UBERON_0005304.md index 4f4740d914..2465bed7f9 100644 --- a/md/UBERON/04/UBERON_0005304.md +++ b/md/UBERON/04/UBERON_0005304.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005304 * *Label* = submucous nerve plexus - * *Definition* = The nerves of the small intestines are derived from the plexuses of parasympathetic nerves around the superior mesenteric artery. From this source they run to the myenteric plexus of nerves and ganglia situated between the circular muscular fibers and the mucosal cells. From this a secondary plexus, the plexus of the submucosa (Meissner's plexus, Submucous plexus, submucosal plexus) is derived, and it is formed by branches that have perforated the circular muscular fibers. This plexus lies in the submucous coat of the intestine; it also contains ganglia from which nerve fibers pass to the muscularis mucosae and to the mucous membrane. The nerve bundles of the submucous plexus are finer than those of the myenteric plexus. Its function is to innervate cells in the epithelial layer and the smooth muscle of the[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner's_plexus] + * *Definition* = The nerves of the small intestines are derived from the plexuses of parasympathetic nerves around the superior mesenteric artery. From this source they run to the myenteric plexus of nerves and ganglia situated between the circular muscular fibers and the mucosal cells. From this a secondary plexus, the plexus of the submucosa (Meissner's plexus, Submucous plexus, submucosal plexus) is derived, and it is formed by branches that have perforated the circular muscular fibers. This plexus lies in the submucous coat of the intestine; it also contains ganglia from which nerve fibers pass to the muscularis mucosae and to the mucous membrane. The nerve bundles of the submucous plexus are finer than those of the myenteric plexus. Its function is to innervate cells in the epithelial layer and the smooth muscle of the[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner's_plexus ] * *Comment* = AO notes: in FMA this is part of the esophagus, duodenum and intestine; this violates part-disjointness axioms in uberon ## Synonyms - * submucosal nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21542[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner's_plexus] - * Henle's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001149] - * Meissner's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0002251[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001149] - * meissner's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001149] + * submucosal nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21542, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner's_plexus ] + * Henle's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001149 ] + * Meissner's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0002251, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001149 ] + * meissner's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001149 ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001149 * MESH:A08.800.050.050.850 * SCTID:322349001 - * UMLS:C0038564 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submucous_Nerve_Plexus] + * UMLS:C0038564 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submucous_Nerve_Plexus ] * Wikipedia:Meissner's_plexus * ncithesaurus:Submucous_Nerve_Plexus @@ -30,8 +30,8 @@ ## Superclasses * [enteric plexus](../../UBERON/29/UBERON_0000429.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [submucosa of small intestine](../../UBERON/05/UBERON_0001205.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [lamina propria of esophagus](../../UBERON/74/UBERON_0001974.md) ## Equivalencies @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005404.md b/md/UBERON/04/UBERON_0005404.md index 88372dea8c..3d8d94748c 100644 --- a/md/UBERON/04/UBERON_0005404.md +++ b/md/UBERON/04/UBERON_0005404.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005404 * *Label* = frontonasal suture - * *Definition* = A suture between frontal and nasal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097095[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12416537] + * *Definition* = A suture between frontal and nasal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097095, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12416537 ] ## Synonyms - * frontonasal suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52948] + * frontonasal suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52948 ] * articulation of the nasal bone with frontal bone ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [nasal bone](../../UBERON/81/UBERON_0001681.md) and [connects](../../ts/core#connects.md) some [tetrapod frontal bone](../../UBERON/09/UBERON_0000209.md) and [craniofacial suture](../../UBERON/98/UBERON_0009198.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005604.md b/md/UBERON/04/UBERON_0005604.md index 07b3e2c493..7b3a1e5393 100644 --- a/md/UBERON/04/UBERON_0005604.md +++ b/md/UBERON/04/UBERON_0005604.md @@ -6,7 +6,7 @@ ## Synonyms - * extrahepatic part of the hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000215] + * extrahepatic part of the hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000215 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005704.md b/md/UBERON/04/UBERON_0005704.md index 6d4d592ba7..ec8c37f49e 100644 --- a/md/UBERON/04/UBERON_0005704.md +++ b/md/UBERON/04/UBERON_0005704.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005704 * *Label* = secondary palatal shelf mesenchyme - * *Definition* = Mesenchyme that is part of a secondary palatal shelf. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a secondary palatal shelf. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * palatal shelf mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001063] + * palatal shelf mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001063 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary palatal shelf](../../UBERON/19/UBERON_0005619.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0005904.md b/md/UBERON/04/UBERON_0005904.md index bc15560dc6..5c291a6ddf 100644 --- a/md/UBERON/04/UBERON_0005904.md +++ b/md/UBERON/04/UBERON_0005904.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005904 * *Label* = duct of male reproductive system - * *Definition* = Any of the ducts that are part of a male reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Any of the ducts that are part of a male reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = groups the individual ducts in a variety of species ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006004.md b/md/UBERON/04/UBERON_0006004.md index d45f983214..c0ad255b26 100644 --- a/md/UBERON/04/UBERON_0006004.md +++ b/md/UBERON/04/UBERON_0006004.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006004 * *Label* = hair follicle matrix region - * *Definition* = the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010686] + * *Definition* = the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010686 ] ## Synonyms - * germinal matrix of hair bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70772] - * lower part of bulb of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70772] - * lower zone of bulb of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70772] + * germinal matrix of hair bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70772 ] + * lower part of bulb of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70772 ] + * lower zone of bulb of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70772 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006104.md b/md/UBERON/04/UBERON_0006104.md index 30bb3af9a0..84622dccfb 100644 --- a/md/UBERON/04/UBERON_0006104.md +++ b/md/UBERON/04/UBERON_0006104.md @@ -6,24 +6,24 @@ ## Synonyms - * B09-36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * BA36 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * Brodmann area 36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * Brodmann.36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * area 36 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68633] - * area 36 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * area ectorhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * ectorhinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1769] - * ectorhinal area 36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68633] - * B09-36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1769[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * BA36 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * Brodmann area 36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * Brodmann.36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * area 36 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68633 ] + * area 36 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * area ectorhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * ectorhinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1769 ] + * ectorhinal area 36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68633 ] + * B09-36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1769, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BTO:0004357 * FMA:68633 * NIF_GrossAnatomy:birnlex_1769 - * UMLS:C1272497 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1769] + * UMLS:C1272497 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1769 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006204.md b/md/UBERON/04/UBERON_0006204.md index c8ccb8f1f6..717e8c0cc7 100644 --- a/md/UBERON/04/UBERON_0006204.md +++ b/md/UBERON/04/UBERON_0006204.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006204 * *Label* = inguinal ligament - * *Definition* = a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_ligament] + * *Definition* = a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_ligament ] ## Synonyms - * Poupart's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19855[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DUBIOUS] - * Vesalius' ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19855] - * fallopian ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19855[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DUBIOUS] + * Poupart's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19855, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DUBIOUS ] + * Vesalius' ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19855 ] + * fallopian ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19855, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DUBIOUS ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006304.md b/md/UBERON/04/UBERON_0006304.md index 369fd93726..89f07326a8 100644 --- a/md/UBERON/04/UBERON_0006304.md +++ b/md/UBERON/04/UBERON_0006304.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006604.md b/md/UBERON/04/UBERON_0006604.md index 87ce27407f..035630c0fb 100644 --- a/md/UBERON/04/UBERON_0006604.md +++ b/md/UBERON/04/UBERON_0006604.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006604 * *Label* = lamina orbitonasalis - * *Definition* = Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001503] + * *Definition* = Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001503 ] ## Synonyms - * laminas orbitonasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001503] + * laminas orbitonasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001503 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In the larva, structure that is fused to the wall of the braincase, lateral to the olfactory foramen, and separates the nasal capsule and orbit. In the adult frog it constitutes the ventral part of postnasal wall.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006804.md b/md/UBERON/04/UBERON_0006804.md index decd1d1ed0..065ddde031 100644 --- a/md/UBERON/04/UBERON_0006804.md +++ b/md/UBERON/04/UBERON_0006804.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006804 * *Label* = reticular tissue - * *Definition* = Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20116[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticular_connective_tissue] + * *Definition* = Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20116, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticular_connective_tissue ] * *Comment* = AO notes: in FMA this is asserted as part of smooth muscle tissue ## Synonyms - * reticular connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20116] - * textus connectivus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * reticular connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20116 ] + * textus connectivus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Network of reticular fibres (fine collagen) that form a soft skeleton to support the lymphoid organs (lymph nodes, bone marrow, and spleen).[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass connective tissue proper (AAO:0000099)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0006904.md b/md/UBERON/04/UBERON_0006904.md index 0ec3078a34..88829f679a 100644 --- a/md/UBERON/04/UBERON_0006904.md +++ b/md/UBERON/04/UBERON_0006904.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006904 * *Label* = head mesenchyme from mesoderm - * *Definition* = A head mesenchyme that develops_from a mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A head mesenchyme that develops_from a mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme ## Synonyms * head mesenchyme derived from mesoderm - * head mesenchyme from head mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001118] + * head mesenchyme from head mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001118 ] * head mesenchyme from mesoderm - * mesenchyme derived from head mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:1057] + * mesenchyme derived from head mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:1057 ] * mesenchyme from head mesoderm - * cranial mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0005280] - * head mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0011051[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0005280] + * cranial mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0005280 ] + * head mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0011051, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0005280 ] ## Cross-references @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) and [head mesenchyme](../../UBERON/53/UBERON_0005253.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0007204.md b/md/UBERON/04/UBERON_0007204.md index 6e3e890317..8f23bf8d8c 100644 --- a/md/UBERON/04/UBERON_0007204.md +++ b/md/UBERON/04/UBERON_0007204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007204 * *Label* = brachiocephalic vasculature - * *Definition* = The vasculature consisting of brachiocephalic arteries and veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The vasculature consisting of brachiocephalic arteries and veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0007304.md b/md/UBERON/04/UBERON_0007304.md index 1e12ee1f52..a4c6e12fff 100644 --- a/md/UBERON/04/UBERON_0007304.md +++ b/md/UBERON/04/UBERON_0007304.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007304 * *Label* = appendage vasculature - * *Definition* = A vasculature that is part of a limb/fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a limb/fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fin vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005095[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fin vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005095, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [appendage](../../UBERON/26/UBERON_0000026.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0007804.md b/md/UBERON/04/UBERON_0007804.md index 3df9c49ea0..a07888a82f 100644 --- a/md/UBERON/04/UBERON_0007804.md +++ b/md/UBERON/04/UBERON_0007804.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007804 * *Label* = sclerotic ring - * *Definition* = Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclerotic_ring] + * *Definition* = Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclerotic_ring ] ## Synonyms - * scleral ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclerotic_ring] + * scleral ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclerotic_ring ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0008304.md b/md/UBERON/04/UBERON_0008304.md index 26d8ee4654..ad17689bdc 100644 --- a/md/UBERON/04/UBERON_0008304.md +++ b/md/UBERON/04/UBERON_0008304.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008304 * *Label* = inner chondrogenic layer of perichondrium - * *Definition* = The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:The_Free_Encyclopedia] + * *Definition* = The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:The_Free_Encyclopedia ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0008404.md b/md/UBERON/04/UBERON_0008404.md index 4af75e61f7..688d619983 100644 --- a/md/UBERON/04/UBERON_0008404.md +++ b/md/UBERON/04/UBERON_0008404.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008404 * *Label* = proximale tubular epithelium - * *Definition* = The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Renal_Physiology:Section_7,_Chapter_3] + * *Definition* = The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Renal_Physiology:Section_7,_Chapter_3 ] ## Synonyms - * proximale tubule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003576] + * proximale tubule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003576 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal tubule](../../UBERON/34/UBERON_0004134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0008604.md b/md/UBERON/04/UBERON_0008604.md index f5c1de2627..53563c994f 100644 --- a/md/UBERON/04/UBERON_0008604.md +++ b/md/UBERON/04/UBERON_0008604.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008604 * *Label* = helicis minor - * *Definition* = The Helicis minor is an oblique fasciculus, covering the crus helicis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helicis_minor] + * *Definition* = The Helicis minor is an oblique fasciculus, covering the crus helicis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helicis_minor ] ## Synonyms * helicis minor muscle - * musculus helicis minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helicis_minor[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus helicis minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helicis_minor, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0008804.md b/md/UBERON/04/UBERON_0008804.md index 89bba78bb8..a7ab2830bb 100644 --- a/md/UBERON/04/UBERON_0008804.md +++ b/md/UBERON/04/UBERON_0008804.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008804 * *Label* = stylopharyngeus muscle - * *Definition* = The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylopharyngeus_muscle] + * *Definition* = The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylopharyngeus_muscle ] ## Synonyms - * stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylopharyngeus_muscle] - * M. stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylopharyngeus_muscle] - * musculus stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylopharyngeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylopharyngeus_muscle] + * stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylopharyngeus_muscle ] + * M. stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylopharyngeus_muscle ] + * musculus stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylopharyngeus_muscle ] + * musculus stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylopharyngeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46664 * SCTID:244806000 - * UMLS:C1522014 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stylopharyngeus] + * UMLS:C1522014 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stylopharyngeus ] * Wikipedia:Stylopharyngeus_muscle * http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png * ncithesaurus:Stylopharyngeus @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0008904.md b/md/UBERON/04/UBERON_0008904.md index 14c714c3c2..1a6c75d373 100644 --- a/md/UBERON/04/UBERON_0008904.md +++ b/md/UBERON/04/UBERON_0008904.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008904 * *Label* = neuromast - * *Definition* = Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * *Definition* = Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Synonyms - * cyatocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000243] - * lateral line neuromast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000243] - * lateral line organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000243] - * neuromaste superficiel@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000243] - * neuromasts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000243[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cyatocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000243 ] + * lateral line neuromast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000243 ] + * lateral line organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000243 ] + * neuromaste superficiel@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000243 ] + * neuromasts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000243, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass lateral line receptor (AAO:0010705)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0009204.md b/md/UBERON/04/UBERON_0009204.md index bb3dcd7ab5..9768c999da 100644 --- a/md/UBERON/04/UBERON_0009204.md +++ b/md/UBERON/04/UBERON_0009204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009204 * *Label* = medial nasal process mesenchyme - * *Definition* = Mesenchyme that is part of a medial nasal prominence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a medial nasal prominence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial nasal prominence](../../UBERON/68/UBERON_0004068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0009504.md b/md/UBERON/04/UBERON_0009504.md index 36b83c344e..c0a8e62280 100644 --- a/md/UBERON/04/UBERON_0009504.md +++ b/md/UBERON/04/UBERON_0009504.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009504 * *Label* = associated mesenchyme of main bronchus - * *Definition* = Mesenchyme that is part of a main bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a main bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0010204.md b/md/UBERON/04/UBERON_0010204.md index fdb8eeb8d7..23ac8a2ebc 100644 --- a/md/UBERON/04/UBERON_0010204.md +++ b/md/UBERON/04/UBERON_0010204.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010204 * *Label* = tail vasculature - * *Definition* = A vasculature that is part of a post-anal tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a post-anal tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: isa blood vessel in XAO ## Synonyms - * post-vent vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005037] - * tail vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005037] + * post-vent vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005037 ] + * tail vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005037 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0010304.md b/md/UBERON/04/UBERON_0010304.md index 2e57d58b22..a4cd3ba318 100644 --- a/md/UBERON/04/UBERON_0010304.md +++ b/md/UBERON/04/UBERON_0010304.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010304 * *Label* = non-keratinized stratified squamous epithelium - * *Definition* = Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45569[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_squamous_epithelium#Nonkeratinized] + * *Definition* = Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45569, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_squamous_epithelium#Nonkeratinized ] ## Synonyms - * epithelium stratificatum squamosum noncornificatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45569] - * nonkeratinizing stratified squamous epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45569] + * epithelium stratificatum squamosum noncornificatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45569 ] + * nonkeratinizing stratified squamous epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45569 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0010404.md b/md/UBERON/04/UBERON_0010404.md index f83db8a6b5..280e20e21d 100644 --- a/md/UBERON/04/UBERON_0010404.md +++ b/md/UBERON/04/UBERON_0010404.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010404 * *Label* = lateral ventricle subependymal layer - * *Definition* = A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subependymal_zone] + * *Definition* = A cell layer below the ependyma in the lateral ventricles of the brain. This region contains adult neural stem cells which have the potential to generate new neurons and glial cells via neurogenesis. It is an adult version of the embryonic forebrain germinal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subependymal_zone ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0010504.md b/md/UBERON/04/UBERON_0010504.md index 9546a947d1..38b9a350bb 100644 --- a/md/UBERON/04/UBERON_0010504.md +++ b/md/UBERON/04/UBERON_0010504.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0006588 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0006589 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Round_Ligament - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010504 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_0010704.md b/md/UBERON/04/UBERON_0010704.md index 8f35ee01ff..77046b4909 100644 --- a/md/UBERON/04/UBERON_0010704.md +++ b/md/UBERON/04/UBERON_0010704.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010704 * *Label* = parenchyma of quadrate lobe of liver - * *Definition* = A liver parenchyma that is part of a quadrate lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A liver parenchyma that is part of a quadrate lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * liver right quadrate lobe parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001014] - * parenchyma of quadrate lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18320] + * liver right quadrate lobe parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001014 ] + * parenchyma of quadrate lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18320 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [liver parenchyma](../../UBERON/80/UBERON_0001280.md) and [part_of](../../BFO/50/BFO_0000050.md) some [quadrate lobe of liver](../../UBERON/16/UBERON_0001116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011004.md b/md/UBERON/04/UBERON_0011004.md index a52db7f1bc..90023e27e5 100644 --- a/md/UBERON/04/UBERON_0011004.md +++ b/md/UBERON/04/UBERON_0011004.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011004 * *Label* = pharyngeal arch cartilage - * *Definition* = A cartilage element that is part of a splanchnocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage element that is part of a splanchnocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pharyngeal arch cartilages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001460[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * splanchnocranium cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001460] + * pharyngeal arch cartilages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001460, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * splanchnocranium cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001460 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011104.md b/md/UBERON/04/UBERON_0011104.md index c0c0685252..b8d3466e8a 100644 --- a/md/UBERON/04/UBERON_0011104.md +++ b/md/UBERON/04/UBERON_0011104.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011104 * *Label* = epiphysis of fifth metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone of digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone of digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fifth metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86330] + * fifth metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86330 ] * metacarpal 5 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 5](../../UBERON/49/UBERON_0003649.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011204.md b/md/UBERON/04/UBERON_0011204.md index b2685a1767..d51be0639c 100644 --- a/md/UBERON/04/UBERON_0011204.md +++ b/md/UBERON/04/UBERON_0011204.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011204 * *Label* = rectovesical pouch - * *Definition* = Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] + * *Definition* = Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] ## Synonyms - * excavatio rectovesicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recto-vesical pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14727] - * rectovesical space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14727] - * excavatio rectovesicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] - * rectovesical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] - * rectovesical excavation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] - * rectovesical pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] - * retrovesical excavation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-vesical_pouch] + * excavatio rectovesicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recto-vesical pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14727 ] + * rectovesical space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14727 ] + * excavatio rectovesicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] + * rectovesical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] + * rectovesical excavation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] + * rectovesical pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] + * retrovesical excavation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-vesical_pouch ] ## Cross-references * FMA:14727 * SCTID:261416006 - * UMLS:C0230301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Recto-Vesical_Pouch] + * UMLS:C0230301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Recto-Vesical_Pouch ] * Wikipedia:Recto-vesical_pouch * http://upload.wikimedia.org/wikipedia/commons/4/45/Gray1228.png * ncithesaurus:Recto-Vesical_Pouch @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011304.md b/md/UBERON/04/UBERON_0011304.md index 3cf18811fa..5f61eb2f42 100644 --- a/md/UBERON/04/UBERON_0011304.md +++ b/md/UBERON/04/UBERON_0011304.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011304 * *Label* = tunicate postabdomen - * *Definition* = Basalmost subdivision of a tunicate containing the heart and reproductive organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073] + * *Definition* = Basalmost subdivision of a tunicate containing the heart and reproductive organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073 ] * *Comment* = Taxon notes: Most ascidians lack a postabdomen ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011604.md b/md/UBERON/04/UBERON_0011604.md index e41b179413..0d52a0d8be 100644 --- a/md/UBERON/04/UBERON_0011604.md +++ b/md/UBERON/04/UBERON_0011604.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011604 * *Label* = carina of sternum - * *Definition* = An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Keel_(bird)] + * *Definition* = An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Keel_(bird) ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011804.md b/md/UBERON/04/UBERON_0011804.md index 1676cb5cf8..b7ecd11acf 100644 --- a/md/UBERON/04/UBERON_0011804.md +++ b/md/UBERON/04/UBERON_0011804.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011804 * *Label* = feather bud, epidermal component - * *Definition* = An epithelial bud that is part of a feather bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelial bud that is part of a feather bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * feather bud epithelium - * feather germ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * feather germ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial bud](../../UBERON/53/UBERON_0005153.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather bud](../../UBERON/02/UBERON_0011802.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0011904.md b/md/UBERON/04/UBERON_0011904.md index 9b1605fb56..213d9e68c9 100644 --- a/md/UBERON/04/UBERON_0011904.md +++ b/md/UBERON/04/UBERON_0011904.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011904 * *Label* = gastrolith - * *Definition* = a rock held inside a gastrointestinal tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrolith] + * *Definition* = a rock held inside a gastrointestinal tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrolith ] ## Synonyms - * gizzard stone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrolith] - * stomach stone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrolith] + * gizzard stone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrolith ] + * stomach stone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrolith ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0012104.md b/md/UBERON/04/UBERON_0012104.md index 62a8e97ea6..4ebd4a8db2 100644 --- a/md/UBERON/04/UBERON_0012104.md +++ b/md/UBERON/04/UBERON_0012104.md @@ -7,7 +7,7 @@ ## Synonyms - * os peroneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261702/] + * os peroneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261702/ ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0012304.md b/md/UBERON/04/UBERON_0012304.md index 5007f88aac..e8e54baa84 100644 --- a/md/UBERON/04/UBERON_0012304.md +++ b/md/UBERON/04/UBERON_0012304.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012304 * *Label* = nasal diverticulum - * *Definition* = Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3899930983[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1367] + * *Definition* = Caudally blind-ending cutaneous pouch lined with skin that occupies the nasoincisive notch. It's ventral and medial walls is formed by the alar fold. It's lateral wall is formed by the external nares and it's dorsal wall is formed by the straight fold. Lined by pigmented predominantly hairless skin. It has an external opening located on the dorsolateral aspect of the "true nostril". When the horse is exercising, obliteration of the nasal diverticulum greatly widens the nostrils increasing air intake[MURDOCH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3899930983, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1367 ] ## Synonyms * false nostril - * nasal trumpet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3899930983] - * soft nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3899930983] + * nasal trumpet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3899930983 ] + * soft nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3899930983 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012304 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0012504.md b/md/UBERON/04/UBERON_0012504.md index ff3091363c..939162db31 100644 --- a/md/UBERON/04/UBERON_0012504.md +++ b/md/UBERON/04/UBERON_0012504.md @@ -6,12 +6,12 @@ ## Synonyms - * adventitia of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63006] - * adventitious layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63006] - * esophageal adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63006] - * esophagus adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63006] - * tunica adventitia (esophagus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63006] - * tunica adventitia oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * adventitia of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63006 ] + * adventitious layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63006 ] + * esophageal adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63006 ] + * esophagus adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63006 ] + * tunica adventitia (esophagus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63006 ] + * tunica adventitia oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adventitia](../../UBERON/42/UBERON_0005742.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0013204.md b/md/UBERON/04/UBERON_0013204.md index 53a151a04f..7f84c7626a 100644 --- a/md/UBERON/04/UBERON_0013204.md +++ b/md/UBERON/04/UBERON_0013204.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013204 * *Label* = epipubic bone - * *Definition* = One of a pair of bones running antero-laterally from the centre of the pubis in marsupials and some other mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = One of a pair of bones running antero-laterally from the centre of the pubis in marsupials and some other mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epipubic bones are a pair of bones projecting forward from the pelvic bones of modern marsupials and of some fossil mammals: multituberculates, monotremes, and even basal eutherians (the ancestors of placental mammals). In modern marsupials the epipubic bones are often called "marsupial bones" because they support the mother's pouch ('marsupium' is Latin for 'pouch'), but their presence on other groups of mammals indicates that this was not their original function, which some researchers think was to assist locomotion by supporting some of the muscles that flex the thigh. The epipubic bones were first described in 1698 but their functions have remained unresolved. It has been suggested that they form part of a kinetic linkage stretching from the femur on one side to the ribs on the opposite side. This linkage is formed by a series of muscles: each epipubic bone is connected to the femur by the pectineus muscle, and to the ribs and vertebrae by the pyramidalis, rectus abdominis, and external and internal obliques. According to this hypothesis, the epipubic bones act as levers to stiffen the trunk during locomotion[Wikipedia:Epipubic_bone]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epipubic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013204 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0013504.md b/md/UBERON/04/UBERON_0013504.md index 39d2cd467f..2277897175 100644 --- a/md/UBERON/04/UBERON_0013504.md +++ b/md/UBERON/04/UBERON_0013504.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [caudal vertebra](../../UBERON/95/UBERON_0001095.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0013704.md b/md/UBERON/04/UBERON_0013704.md index 956df65522..204f064512 100644 --- a/md/UBERON/04/UBERON_0013704.md +++ b/md/UBERON/04/UBERON_0013704.md @@ -9,7 +9,7 @@ ## Cross-references - * UMLS:C1518428 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Notochordal_Canal] + * UMLS:C1518428 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Notochordal_Canal ] * ncithesaurus:Notochordal_Canal ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014404.md b/md/UBERON/04/UBERON_0014404.md index 70976698ee..c34295a20a 100644 --- a/md/UBERON/04/UBERON_0014404.md +++ b/md/UBERON/04/UBERON_0014404.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014404 * *Label* = female anatomical structure - * *Definition* = A part of the body present only in females. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000176[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A part of the body present only in females. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000176, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014404 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014504.md b/md/UBERON/04/UBERON_0014504.md index a5f93b85ef..609b45a494 100644 --- a/md/UBERON/04/UBERON_0014504.md +++ b/md/UBERON/04/UBERON_0014504.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014504 * *Label* = proximal phalanx of digit 4 - * *Definition* = A proximal phalanx that is part of a autopod digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal phalanx that is part of a autopod digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014504 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014604.md b/md/UBERON/04/UBERON_0014604.md index 09cc3ea959..ce4b6d8d6f 100644 --- a/md/UBERON/04/UBERON_0014604.md +++ b/md/UBERON/04/UBERON_0014604.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus parvicellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1426[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1426[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus parvicellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHp] - * paraventricular hypothalamic nucleus, parvicellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHp] - * paraventricular nucleus of the hypothalamus, parvicellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHp] + * paraventricular nucleus of the hypothalamus parvicellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1426, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1992_abbrevSource,NIF_GrossAnatomy:birnlex_1426, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus parvicellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHp ] + * paraventricular hypothalamic nucleus, parvicellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHp ] + * paraventricular nucleus of the hypothalamus, parvicellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHp ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014604 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014704.md b/md/UBERON/04/UBERON_0014704.md index 3c388eb037..ffb272eb1c 100644 --- a/md/UBERON/04/UBERON_0014704.md +++ b/md/UBERON/04/UBERON_0014704.md @@ -6,7 +6,7 @@ ## Synonyms - * pleuro-peritoneal canal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25034] + * pleuro-peritoneal canal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25034 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [pleuroperitoneal canal](../../UBERON/79/UBERON_0006279.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014704 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014804.md b/md/UBERON/04/UBERON_0014804.md index 078cb90893..dcc606f547 100644 --- a/md/UBERON/04/UBERON_0014804.md +++ b/md/UBERON/04/UBERON_0014804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014804 * *Label* = median nuchal line - * *Definition* = Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * *Definition* = Of the nuchal lines, the one that runs from the external occipital protuberance a ridge or crest is the median nuchal line, often faintly marked, descends to the foramen magnum, and affords attachment to the ligamentum nuchae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014804 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0014904.md b/md/UBERON/04/UBERON_0014904.md index 492829e540..2836ddc504 100644 --- a/md/UBERON/04/UBERON_0014904.md +++ b/md/UBERON/04/UBERON_0014904.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014904 * *Label* = intersegmental pulmonary vein - * *Definition* = a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=97310] + * *Definition* = a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=97310 ] ## Synonyms - * infrasegmental part of pulmonary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] - * intersegmental part of pulmonary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] - * partes intersegmentales venarum pulmonum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=partes+intersegmentales+venarum+pulmonum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * infrasegmental part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part] - * intersegmental vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein] + * infrasegmental part of pulmonary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part ] + * intersegmental part of pulmonary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein ] + * partes intersegmentales venarum pulmonum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=partes+intersegmentales+venarum+pulmonum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * infrasegmental part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=infrasegmental+part ] + * intersegmental vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=intersegmental+part+of+pulmonary+vein ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014904 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0015004.md b/md/UBERON/04/UBERON_0015004.md index d10957f114..f3825e9539 100644 --- a/md/UBERON/04/UBERON_0015004.md +++ b/md/UBERON/04/UBERON_0015004.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015004 * *Label* = tibia endochondral element - * *Definition* = A tibia bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A tibia bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * tibia element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * tibia skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * tibia element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * tibia skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [tibia cartilage element](../../UBERON/49/UBERON_0010849.md)or[tibia pre-cartilage condensation](../../UBERON/50/UBERON_0010850.md)or[tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_0015104.md b/md/UBERON/04/UBERON_0015104.md index e7e22c340e..9cde706159 100644 --- a/md/UBERON/04/UBERON_0015104.md +++ b/md/UBERON/04/UBERON_0015104.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone 1 endochondral element](../../UBERON/02/UBERON_0015102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015104 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_1000004.md b/md/UBERON/04/UBERON_1000004.md index 9ecb7a7b0c..57612dbb56 100644 --- a/md/UBERON/04/UBERON_1000004.md +++ b/md/UBERON/04/UBERON_1000004.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000004 * *Label* = collection of hair on ear - * *Definition* = A collection of hairs that grows on the external ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A collection of hairs that grows on the external ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hairs](../../UBERON/64/UBERON_0010164.md) and [part_of](../../BFO/50/BFO_0000050.md) some [external ear](../../UBERON/91/UBERON_0001691.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000004 + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000004.md b/md/UBERON/04/UBERON_2000004.md index 20e04cbd24..b7e975634e 100644 --- a/md/UBERON/04/UBERON_2000004.md +++ b/md/UBERON/04/UBERON_2000004.md @@ -6,7 +6,7 @@ ## Synonyms - * pre-polster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-051019-5] + * pre-polster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-051019-5 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000104.md b/md/UBERON/04/UBERON_2000104.md index d57413b6a0..1b9b16904a 100644 --- a/md/UBERON/04/UBERON_2000104.md +++ b/md/UBERON/04/UBERON_2000104.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000104 * *Label* = suprapreopercle - * *Definition* = Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Synonyms: supraopercle (Roberts 1969) supraopercular bone (Buckup 1998) ## Synonyms - * supraopercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000104] - * supraopercular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000104] - * suprapreopercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000104[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * supraopercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000104 ] + * supraopercular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000104 ] + * suprapreopercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000104, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -35,7 +35,9 @@ supraopercular bone (Buckup 1998) * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000404.md b/md/UBERON/04/UBERON_2000404.md index 31c1ce6ced..20f7465e7c 100644 --- a/md/UBERON/04/UBERON_2000404.md +++ b/md/UBERON/04/UBERON_2000404.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000504.md b/md/UBERON/04/UBERON_2000504.md index 3e27471cfb..6902077a63 100644 --- a/md/UBERON/04/UBERON_2000504.md +++ b/md/UBERON/04/UBERON_2000504.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000704.md b/md/UBERON/04/UBERON_2000704.md index d3e113815d..ad6c2fee24 100644 --- a/md/UBERON/04/UBERON_2000704.md +++ b/md/UBERON/04/UBERON_2000704.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2000804.md b/md/UBERON/04/UBERON_2000804.md index 5961b28db1..e6046e2b2b 100644 --- a/md/UBERON/04/UBERON_2000804.md +++ b/md/UBERON/04/UBERON_2000804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000804 * *Label* = myotome somite 20 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001004.md b/md/UBERON/04/UBERON_2001004.md index 3a7c59b027..9fe3b7ed88 100644 --- a/md/UBERON/04/UBERON_2001004.md +++ b/md/UBERON/04/UBERON_2001004.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001004[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001004, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_2001304.md b/md/UBERON/04/UBERON_2001304.md index 53a631aef0..bd6cf62935 100644 --- a/md/UBERON/04/UBERON_2001304.md +++ b/md/UBERON/04/UBERON_2001304.md @@ -6,8 +6,8 @@ ## Synonyms - * gX3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001304] - * nodose ganglion 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001304] + * gX3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001304 ] + * nodose ganglion 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001304 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001404.md b/md/UBERON/04/UBERON_2001404.md index cbf99c63d0..dc08fe5133 100644 --- a/md/UBERON/04/UBERON_2001404.md +++ b/md/UBERON/04/UBERON_2001404.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001404 * *Label* = preethmoid bone - * *Definition* = Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001504.md b/md/UBERON/04/UBERON_2001504.md index af662352b8..4b5120a560 100644 --- a/md/UBERON/04/UBERON_2001504.md +++ b/md/UBERON/04/UBERON_2001504.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001504 * *Label* = occipital arch cartilage - * *Definition* = Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001604.md b/md/UBERON/04/UBERON_2001604.md index fb67ff1495..fd2cd62676 100644 --- a/md/UBERON/04/UBERON_2001604.md +++ b/md/UBERON/04/UBERON_2001604.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001604 * *Label* = lateral ethmoid palatine process - * *Definition* = Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * antorbital process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001604] + * antorbital process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001604 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001704.md b/md/UBERON/04/UBERON_2001704.md index ad121c3f80..af0971818a 100644 --- a/md/UBERON/04/UBERON_2001704.md +++ b/md/UBERON/04/UBERON_2001704.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001704 * *Label* = infraorbital 9 - * *Definition* = Infraorbital that is the ninth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the ninth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001804.md b/md/UBERON/04/UBERON_2001804.md index 1e47644ec0..160336ec34 100644 --- a/md/UBERON/04/UBERON_2001804.md +++ b/md/UBERON/04/UBERON_2001804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001804 * *Label* = olfactory nerve foramen - * *Definition* = Foramen for the passage of the olfactory nerve or cranial nerve 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen for the passage of the olfactory nerve or cranial nerve 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2001904.md b/md/UBERON/04/UBERON_2001904.md index 2bbdfc907b..27489f2f20 100644 --- a/md/UBERON/04/UBERON_2001904.md +++ b/md/UBERON/04/UBERON_2001904.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001904 * *Label* = epibranchial element - * *Definition* = Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * epibranchial elements [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001904[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * epibranchial elements [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001904, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2002004.md b/md/UBERON/04/UBERON_2002004.md index 70979fc60a..33a760a79e 100644 --- a/md/UBERON/04/UBERON_2002004.md +++ b/md/UBERON/04/UBERON_2002004.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002004 * *Label* = anterior dentation of dorsal fin spine 2 - * *Definition* = Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted dorsal-fin spine 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted dorsal-fin spine 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anterior denticle of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002004] - * anterior serration of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002004] - * anterior thorn of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002004] - * anterior tooth of dorsal fin spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002004] - * dorsal fin spine 2 anterior dentation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002004] + * anterior denticle of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002004 ] + * anterior serration of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002004 ] + * anterior thorn of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002004 ] + * anterior tooth of dorsal fin spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002004 ] + * dorsal fin spine 2 anterior dentation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002004 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2002204.md b/md/UBERON/04/UBERON_2002204.md index b6b0c13307..5ec301d140 100644 --- a/md/UBERON/04/UBERON_2002204.md +++ b/md/UBERON/04/UBERON_2002204.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002204 * *Label* = obsolete lateral nucleus of ventral telencephalon - * *Definition* = Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * area ventralis telencephali, nucleus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002204] + * area ventralis telencephali, nucleus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002204 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_2005104.md b/md/UBERON/04/UBERON_2005104.md index cdb0893734..6bd6d8f29d 100644 --- a/md/UBERON/04/UBERON_2005104.md +++ b/md/UBERON/04/UBERON_2005104.md @@ -6,7 +6,7 @@ ## Synonyms - * presumptive dorsal fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005104] + * presumptive dorsal fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005104 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2005204.md b/md/UBERON/04/UBERON_2005204.md index 5a88099aa9..996cf99bc8 100644 --- a/md/UBERON/04/UBERON_2005204.md +++ b/md/UBERON/04/UBERON_2005204.md @@ -6,7 +6,7 @@ ## Synonyms - * RoV3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005204] + * RoV3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005204 ] ## Cross-references @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_2005304.md b/md/UBERON/04/UBERON_2005304.md index d95efe9ca9..d4a8b2bf88 100644 --- a/md/UBERON/04/UBERON_2005304.md +++ b/md/UBERON/04/UBERON_2005304.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_2007004.md b/md/UBERON/04/UBERON_2007004.md index 7d617fd9a9..e98135c4c6 100644 --- a/md/UBERON/04/UBERON_2007004.md +++ b/md/UBERON/04/UBERON_2007004.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007004 * *Label* = epiphysial cluster - * *Definition* = Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ec [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007004] + * ec [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007004 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3000704.md b/md/UBERON/04/UBERON_3000704.md index cba461a932..25627616ec 100644 --- a/md/UBERON/04/UBERON_3000704.md +++ b/md/UBERON/04/UBERON_3000704.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000704 * *Label* = anterior intervertebral notch - * *Definition* = Indentation on the posterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Indentation on the posterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3000804.md b/md/UBERON/04/UBERON_3000804.md index 0180ab7072..d71aa09f34 100644 --- a/md/UBERON/04/UBERON_3000804.md +++ b/md/UBERON/04/UBERON_3000804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000804 * *Label* = sulcus articularis medialis - * *Definition* = In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3000904.md b/md/UBERON/04/UBERON_3000904.md index 9751d54064..cb1ae6c811 100644 --- a/md/UBERON/04/UBERON_3000904.md +++ b/md/UBERON/04/UBERON_3000904.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000904 * *Label* = apophysis distalis of tibiofibula - * *Definition* = Swelling on the extensor surface of the distal head of the tibiofibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Swelling on the extensor surface of the distal head of the tibiofibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010104.md b/md/UBERON/04/UBERON_3010104.md index 779fba535c..b5eb84a15a 100644 --- a/md/UBERON/04/UBERON_3010104.md +++ b/md/UBERON/04/UBERON_3010104.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010204.md b/md/UBERON/04/UBERON_3010204.md index cf3850b8c7..0c0d3d8ae8 100644 --- a/md/UBERON/04/UBERON_3010204.md +++ b/md/UBERON/04/UBERON_3010204.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010404.md b/md/UBERON/04/UBERON_3010404.md index 779989b995..52b671eb97 100644 --- a/md/UBERON/04/UBERON_3010404.md +++ b/md/UBERON/04/UBERON_3010404.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010404 * *Label* = capillary system of liver - * *Definition* = The smallest of the blood vessels, parts of the microcirculation, of the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:curator] + * *Definition* = The smallest of the blood vessels, parts of the microcirculation, of the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:curator ] ## Synonyms - * liver capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010404] + * liver capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010404 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010604.md b/md/UBERON/04/UBERON_3010604.md index 56fb02392a..686f466247 100644 --- a/md/UBERON/04/UBERON_3010604.md +++ b/md/UBERON/04/UBERON_3010604.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010704.md b/md/UBERON/04/UBERON_3010704.md index f81d2c5b00..8b53427734 100644 --- a/md/UBERON/04/UBERON_3010704.md +++ b/md/UBERON/04/UBERON_3010704.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010704 * *Label* = levator mandibulae longus - * *Definition* = Responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_3010804.md b/md/UBERON/04/UBERON_3010804.md index 3908780de5..e2dd723566 100644 --- a/md/UBERON/04/UBERON_3010804.md +++ b/md/UBERON/04/UBERON_3010804.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010804 * *Label* = ramus ventral - * *Definition* = This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = This ramus leaves the postotic ganglionic complex together with the third branchial ramus of X. This ramule innervates the ventral line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_4000004.md b/md/UBERON/04/UBERON_4000004.md index 7c448e286b..a01972c265 100644 --- a/md/UBERON/04/UBERON_4000004.md +++ b/md/UBERON/04/UBERON_4000004.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000004 * *Label* = obsolete opercle bone - * *Definition* = Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Term resides in TAO. ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:2000250 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/04/UBERON_4000104.md b/md/UBERON/04/UBERON_4000104.md index b8921b9ff2..de8f300125 100644 --- a/md/UBERON/04/UBERON_4000104.md +++ b/md/UBERON/04/UBERON_4000104.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000104 * *Label* = ganoine - * *Definition* = Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_4100004.md b/md/UBERON/04/UBERON_4100004.md index 2d8a68c318..6c79952401 100644 --- a/md/UBERON/04/UBERON_4100004.md +++ b/md/UBERON/04/UBERON_4100004.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Nizar Ibrahim - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_4200004.md b/md/UBERON/04/UBERON_4200004.md index 966ab7de47..56b5141293 100644 --- a/md/UBERON/04/UBERON_4200004.md +++ b/md/UBERON/04/UBERON_4200004.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = A.Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_4200104.md b/md/UBERON/04/UBERON_4200104.md index 38dae8d5e1..26e22fba4f 100644 --- a/md/UBERON/04/UBERON_4200104.md +++ b/md/UBERON/04/UBERON_4200104.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/04/UBERON_4300004.md b/md/UBERON/04/UBERON_4300004.md index c8cfebce7d..e3a2d0bb88 100644 --- a/md/UBERON/04/UBERON_4300004.md +++ b/md/UBERON/04/UBERON_4300004.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0000005.md b/md/UBERON/05/UBERON_0000005.md index d3675fd1cc..360fc57863 100644 --- a/md/UBERON/05/UBERON_0000005.md +++ b/md/UBERON/05/UBERON_0000005.md @@ -6,7 +6,7 @@ ## Synonyms - * chemosensory sensory organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005157] + * chemosensory sensory organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005157 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of chemical stimulus](../../GO/06/GO_0007606.md) and [sense organ](../../UBERON/20/UBERON_0000020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0000105.md b/md/UBERON/05/UBERON_0000105.md index 3519dd7648..2d0386e4df 100644 --- a/md/UBERON/05/UBERON_0000105.md +++ b/md/UBERON/05/UBERON_0000105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000105 * *Label* = life cycle stage - * *Definition* = A spatiotemporal region encompassing some part of the life cycle of an organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A spatiotemporal region encompassing some part of the life cycle of an organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage ## Synonyms @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0000205.md b/md/UBERON/05/UBERON_0000205.md index 3f62746f03..ae21460a2e 100644 --- a/md/UBERON/05/UBERON_0000205.md +++ b/md/UBERON/05/UBERON_0000205.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000205 * *Label* = papula - * *Definition* = A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073] + * *Definition* = A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073 ] ## Synonyms - * papulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * papulli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * papulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * papulli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T01:13:57Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0000305.md b/md/UBERON/05/UBERON_0000305.md index a71c991718..9d1b440dd6 100644 --- a/md/UBERON/05/UBERON_0000305.md +++ b/md/UBERON/05/UBERON_0000305.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000305 * *Label* = amnion - * *Definition* = A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 'Amniota'; but not in amphibians and fish (Ichthyopsida), which are consequently termed 'Anamniota'. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amnion] + * *Definition* = A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 'Amniota'; but not in amphibians and fish (Ichthyopsida), which are consequently termed 'Anamniota'. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amnion ] ## Synonyms @@ -20,7 +20,7 @@ * GAID:1298 * MESH:A16.254.403.277 * SCTID:181457005 - * UMLS:C0002630 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Amnion] + * UMLS:C0002630 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Amnion ] * VHOG:0000721 * Wikipedia:Amnion * http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = amniotic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001005.md b/md/UBERON/05/UBERON_0001005.md index f47f3707f1..5c2d090660 100644 --- a/md/UBERON/05/UBERON_0001005.md +++ b/md/UBERON/05/UBERON_0001005.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001005 * *Label* = respiratory airway - * *Definition* = An airway through which respiratory air passes in organisms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trachea] + * *Definition* = An airway through which respiratory air passes in organisms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trachea ] * *Comment* = This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001105.md b/md/UBERON/05/UBERON_0001105.md index 61785ec471..d64a14dda2 100644 --- a/md/UBERON/05/UBERON_0001105.md +++ b/md/UBERON/05/UBERON_0001105.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001105 * *Label* = clavicle - * *Definition* = A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Taxon notes: The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X] AO Notes: FMA and MA differ in whether they consider this part of the shoulder. Development notes: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] ## Synonyms - * clavicle bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005031] - * clavicula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005031] + * clavicle bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005031 ] + * clavicula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005031 ] * collar bone * collarbone @@ -23,7 +23,7 @@ * MESH:A02.835.232.087.227 * OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA * SCTID:181910004 - * UMLS:C0008913 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Clavicle] + * UMLS:C0008913 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Clavicle ] * VHOG:0000849 * VSAO:0005031 * Wikipedia:Clavicle @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In early tetrapods, the connecting skull bone, the posttemporal, and adjoining shoulder bones, supracleithrum and postcleithrum (=anocleithrum), are absent, leaving a dermal shoulder girdle composed of the remaining ventral elements: the paired cleithrum and clavicle, and an unpaired midventral interclavicle that joins both halves of the girdle across the midline. (...) Several dermal elements of the shoulder persist in early synapsids. The clavicle and interclavicle are present in therapsids and monotremes, but in marsupials and placentals, the interclavicle is absent, the clavicle often is reduced in size, and the scapula becomes the predominant shoulder element.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = clavicular * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001205.md b/md/UBERON/05/UBERON_0001205.md index df54d08704..fef1b1ce32 100644 --- a/md/UBERON/05/UBERON_0001205.md +++ b/md/UBERON/05/UBERON_0001205.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001205 * *Label* = submucosa of small intestine - * *Definition* = submucosal tissue in the small intestines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Small_intestinal_submucosa] + * *Definition* = submucosal tissue in the small intestines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Small_intestinal_submucosa ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * small bowel submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small bowel submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal submucosa * small intestine submucosa - * submucosa of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * submucosa of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tela submucosa (intestinum tenue) - * tela submucosa intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002112[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tela submucosa intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002112, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:14934 * MA:0001562 * SCTID:691000 - * UMLS:C0227268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Submucosa] + * UMLS:C0227268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Submucosa ] * Wikipedia:Small_intestinal_submucosa * ncithesaurus:Small_Intestinal_Submucosa @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001305.md b/md/UBERON/05/UBERON_0001305.md index 32f2e8e72c..c79f029dfc 100644 --- a/md/UBERON/05/UBERON_0001305.md +++ b/md/UBERON/05/UBERON_0001305.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001305 * *Label* = ovarian follicle - * *Definition* = Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_follicle] + * *Definition* = Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_follicle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * follicle of ovary - * follicle of ovary viewed macroscopically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18640] + * follicle of ovary viewed macroscopically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18640 ] * ovary follicle * egg follicle - * folliculi ovarici primarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_follicle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * folliculi ovarici vesiculosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_follicle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * folliculi ovarici primarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_follicle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * folliculi ovarici vesiculosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_follicle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A05.360.319.114.630.535 * SCTID:361111009 * TAO:0001110 - * UMLS:C0018120 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Follicle] + * UMLS:C0018120 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Follicle ] * VHOG:0001536 * Wikipedia:Ovarian_follicle * ZFA:0001110 @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. Selman et al, 1993.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001405.md b/md/UBERON/05/UBERON_0001405.md index c0295be27f..b2d8000741 100644 --- a/md/UBERON/05/UBERON_0001405.md +++ b/md/UBERON/05/UBERON_0001405.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001405 * *Label* = spinalis thoracis muscle - * *Definition* = Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002624] + * *Definition* = Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002624 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * spinalis thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002381] - * musculus spinalis dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002624] - * musculus spinalis thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002624] - * spinal muscle of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002624] - * spinalis dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinalis#Spinalis_dorsi] + * spinalis thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002381 ] + * musculus spinalis dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002624 ] + * musculus spinalis thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002624 ] + * spinal muscle of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002624 ] + * spinalis dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinalis#Spinalis_dorsi ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:22765 * MA:0002381 * SCTID:244863005 - * UMLS:C0224311 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinalis_Thoracis] + * UMLS:C0224311 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinalis_Thoracis ] * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png * ncithesaurus:Spinalis_Thoracis @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001505.md b/md/UBERON/05/UBERON_0001505.md index 4618e4be13..622d258430 100644 --- a/md/UBERON/05/UBERON_0001505.md +++ b/md/UBERON/05/UBERON_0001505.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001505 * *Label* = coracobrachialis muscle - * *Definition* = The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracobrachialis_muscle] + * *Definition* = The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracobrachialis_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Pirogoff's aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37664] - * coracobrachial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002282] + * Pirogoff's aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37664 ] + * coracobrachial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002282 ] * coracobrachialis - * coracobrachialis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracobrachialis_muscle] - * musculus coracobrachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracobrachialis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coracobrachialis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracobrachialis_muscle ] + * musculus coracobrachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracobrachialis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:37664 * MA:0002282 * SCTID:244980008 - * UMLS:C0224246 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coracobrachialis] + * UMLS:C0224246 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coracobrachialis ] * Wikipedia:Coracobrachialis_muscle * http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001605.md b/md/UBERON/05/UBERON_0001605.md index fb5ef4ece1..2545f11b55 100644 --- a/md/UBERON/05/UBERON_0001605.md +++ b/md/UBERON/05/UBERON_0001605.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001605 * *Label* = ciliary muscle - * *Definition* = The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_muscle] + * *Definition* = The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_muscle ] ## Synonyms - * musculus ciliarus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000654] - * Bowman`s muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000654] - * musculus ciliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus ciliarus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000654 ] + * Bowman`s muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000654 ] + * musculus ciliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:49151 * MA:0001269 * SCTID:280862009 - * UMLS:C0559230 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ciliary_Muscle] + * UMLS:C0559230 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ciliary_Muscle ] * Wikipedia:Ciliary_muscle * http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001705.md b/md/UBERON/05/UBERON_0001705.md index 1208386444..556348c263 100644 --- a/md/UBERON/05/UBERON_0001705.md +++ b/md/UBERON/05/UBERON_0001705.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001705 * *Label* = nail - * *Definition* = a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nail_(anatomy)] + * *Definition* = a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nail_(anatomy) ] * *Comment* = TODO: check claw vs nail. A primate's nail consists of the unguis alone; the subunguis has disappeared. ## Synonyms - * claw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Claw[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * claw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Claw, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * talon ## Cross-references @@ -25,7 +25,7 @@ * MIAA:0000158 * OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA * SCTID:72651009 - * UMLS:C0027342 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nail] + * UMLS:C0027342 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nail ] * VHOG:0001361 * Wikipedia:Nail_(anatomy) * XAO:0003103 @@ -53,8 +53,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001805.md b/md/UBERON/05/UBERON_0001805.md index 75e1d6a5a8..ebc45d012d 100644 --- a/md/UBERON/05/UBERON_0001805.md +++ b/md/UBERON/05/UBERON_0001805.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001805 * *Label* = autonomic ganglion - * *Definition* = ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Autonomic_ganglion] + * *Definition* = ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Autonomic_ganglion ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * autonomic nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of autonomic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of visceral nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion autonomicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Autonomic_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * autonomic nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of autonomic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of visceral nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion autonomicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Autonomic_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * EMAPA:18221 * FMA:5889 * MA:0000220 - * UMLS:C0017068 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Autonomic_Ganglion] + * UMLS:C0017068 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Autonomic_Ganglion ] * Wikipedia:Autonomic_ganglion * http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png * ncithesaurus:Autonomic_Ganglion @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [autonomic nervous system](../../UBERON/10/UBERON_0002410.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0001905.md b/md/UBERON/05/UBERON_0001905.md index ad303d6324..b92e2946f3 100644 --- a/md/UBERON/05/UBERON_0001905.md +++ b/md/UBERON/05/UBERON_0001905.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001905 * *Label* = pineal body - * *Definition* = The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pineal_gland] + * *Definition* = The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pineal_gland ] ## Synonyms * corpus pineale - * glandula pinealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62033[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandula pinealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pineal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62033] - * pineal organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000019] - * Pi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1184[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * conarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1184] - * epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000019[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * epiphysis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiphysis_cerebri] - * frontal organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000051] - * pineal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000051] - * pineal gland (Galen) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:297] - * stirnorgan [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000051] + * glandula pinealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62033, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandula pinealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pineal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62033 ] + * pineal organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000019 ] + * Pi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1184, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * conarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1184 ] + * epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000019, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * epiphysis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiphysis_cerebri ] + * frontal organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000051 ] + * pineal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000051 ] + * pineal gland (Galen) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:297 ] + * stirnorgan [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000051 ] ## Cross-references @@ -43,12 +43,12 @@ * MESH:A06.407.635 * NIF_GrossAnatomy:birnlex_1184 * NIF_GrossAnatomy:nlx_anat_1010009 - * NeuroNames:297 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1184] + * NeuroNames:297 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1184 ] * OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA * SCTID:181126002 * TAO:0000019 - * UMLS:C0031939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1184] - * UMLS:C0031939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pineal_Gland] + * UMLS:C0031939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1184 ] + * UMLS:C0031939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pineal_Gland ] * VHOG:0000051 * Wikipedia:Pineal_gland * XAO:0000160 @@ -87,8 +87,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epiphyseal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epiphysial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002005.md b/md/UBERON/05/UBERON_0002005.md index 62529204ed..4002c0c309 100644 --- a/md/UBERON/05/UBERON_0002005.md +++ b/md/UBERON/05/UBERON_0002005.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002005 * *Label* = enteric nervous system - * *Definition* = The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Enteric_nervous_system] + * *Definition* = The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Enteric_nervous_system ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -26,7 +26,7 @@ * MIAA:0000102 * NIF_GrossAnatomy:birnlex_1166 * TAO:0001155 - * UMLS:C0206111 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1166] + * UMLS:C0206111 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1166 ] * Wikipedia:Enteric_nervous_system * ZFA:0001155 @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002105.md b/md/UBERON/05/UBERON_0002105.md index 9578440203..537a56fe59 100644 --- a/md/UBERON/05/UBERON_0002105.md +++ b/md/UBERON/05/UBERON_0002105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002105 * *Label* = vestibulo-auditory system - * *Definition* = A sensory system for the sense of hearing[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_system] + * *Definition* = A sensory system for the sense of hearing[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_system ] * *Comment* = Auditory system is general anatomical term in FMA ## Synonyms @@ -24,7 +24,7 @@ * NeuroNames:2888 * OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA * TAO:0001138 - * UMLS:C0587901 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auditory_System] + * UMLS:C0587901 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auditory_System ] * Wikipedia:Auditory_system * XAO:0003195 * ZFA:0001138 @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of sound](../../GO/05/GO_0007605.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory system used for balance and hearing.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002205.md b/md/UBERON/05/UBERON_0002205.md index 4508c76234..2a2661f7c6 100644 --- a/md/UBERON/05/UBERON_0002205.md +++ b/md/UBERON/05/UBERON_0002205.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002205 * *Label* = manubrium of sternum - * *Definition* = broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Manubrium] + * *Definition* = The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012668, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Manubrium ] * *Comment* = May be cartilage in some species. ## Synonyms * manubrium of sternum - * manubrium sterni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18723] - * sternal manubrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001332] + * manubrium sterni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18723 ] + * sternal manubrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001332 ] * manubrium ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.232.904.766.442 * OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA * SCTID:182014008 - * UMLS:C1710195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternal_Manubrium] + * UMLS:C1710195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternal_Manubrium ] * Wikipedia:Manubrium * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002305.md b/md/UBERON/05/UBERON_0002305.md index a1072b9fd2..85b2ed208f 100644 --- a/md/UBERON/05/UBERON_0002305.md +++ b/md/UBERON/05/UBERON_0002305.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002305 * *Label* = layer of hippocampus - * *Definition* = the layers of the laminar structure of the hippocampus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000813[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers] + * *Definition* = the layers of the laminar structure of the hippocampus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000813, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers ] * *Comment* = TODO - check NIF xref ## Synonyms - * cytoarchitectural fields of hippocampal formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1192] + * cytoarchitectural fields of hippocampal formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1192 ] * hippocampus layer ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002405.md b/md/UBERON/05/UBERON_0002405.md index 744fe96447..235fbd0d95 100644 --- a/md/UBERON/05/UBERON_0002405.md +++ b/md/UBERON/05/UBERON_0002405.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002405 * *Label* = immune system - * *Definition* = Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:immune+system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Immune_system] + * *Definition* = Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:immune+system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Immune_system ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -20,7 +20,7 @@ * OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA * SCTID:362590003 * TAO:0001159 - * UMLS:C0020962 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Immune_System] + * UMLS:C0020962 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Immune_System ] * VHOG:0001247 * Wikipedia:Immune_system * XAO:0003152 @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The antibody-based immune system defined by the presence of the major histocompatibility complex (MHC), T cell receptor (TCR), B cell receptor (BCR) or recombination activating genes (RAGs) is known beginning from jawed fishes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002505.md b/md/UBERON/05/UBERON_0002505.md index 7593db2bc3..cccb122c27 100644 --- a/md/UBERON/05/UBERON_0002505.md +++ b/md/UBERON/05/UBERON_0002505.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002505 * *Label* = spiral modiolar artery - * *Definition* = the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004629] + * *Definition* = the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004629 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002605.md b/md/UBERON/05/UBERON_0002605.md index e577062427..0297c0ed19 100644 --- a/md/UBERON/05/UBERON_0002605.md +++ b/md/UBERON/05/UBERON_0002605.md @@ -6,15 +6,15 @@ ## Synonyms - * brodmann's area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2395] + * brodmann's area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2395 ] ## Cross-references * BAMS:pro * FMA:74888 * NIF_GrossAnatomy:birnlex_1141 - * NeuroNames:2395 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1141] - * UMLS:C0694581 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1141] + * NeuroNames:2395 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1141 ] + * UMLS:C0694581 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1141 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002705.md b/md/UBERON/05/UBERON_0002705.md index e3236c7a18..e06e91db5f 100644 --- a/md/UBERON/05/UBERON_0002705.md +++ b/md/UBERON/05/UBERON_0002705.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002705 * *Label* = midline nuclear group - * *Definition* = The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midline_nuclear_group] + * *Definition* = The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midline_nuclear_group ] ## Synonyms - * median nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020] - * midline nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020] - * midline nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020] - * midline nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020] - * midline thalamic group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000864] - * nuclei mediani (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1462] - * nuclei mediani thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periventricular nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62020] - * Motoneuron Groups [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MNG] - * midline group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MTN] - * midline thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MNG] - * midline thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MTN] - * midline thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:306] - * nuclei mediani thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midline_nuclear_group[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus mediani thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002454] + * median nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020 ] + * midline nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020 ] + * midline nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020 ] + * midline nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020 ] + * midline thalamic group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000864 ] + * nuclei mediani (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1462 ] + * nuclei mediani thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periventricular nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62020 ] + * Motoneuron Groups [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MNG ] + * midline group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MTN ] + * midline thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MNG ] + * midline thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MTN ] + * midline thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:306 ] + * nuclei mediani thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midline_nuclear_group, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus mediani thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002454 ] ## Cross-references @@ -33,7 +33,7 @@ * FMA:62020 * MA:0000864 * NIF_GrossAnatomy:birnlex_1462 - * NeuroNames:306 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1462] + * NeuroNames:306 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1462 ] * SCTID:279163002 * Wikipedia:Midline_nuclear_group * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002805.md b/md/UBERON/05/UBERON_0002805.md index 6a61f70876..32980ee723 100644 --- a/md/UBERON/05/UBERON_0002805.md +++ b/md/UBERON/05/UBERON_0002805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002805 * *Label* = right limbic lobe - * *Definition* = A limbic lobe that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limbic lobe that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limbic lobe](../../UBERON/00/UBERON_0002600.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0002905.md b/md/UBERON/05/UBERON_0002905.md index 700ebb77ef..4417f9a211 100644 --- a/md/UBERON/05/UBERON_0002905.md +++ b/md/UBERON/05/UBERON_0002905.md @@ -6,16 +6,16 @@ ## Synonyms - * sulcus intralingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4019] - * ils [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4019[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus intralingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4019 ] + * ils [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4019, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:ils * FMA:83789 * NIF_GrossAnatomy:birnlex_4019 - * NeuroNames:151 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4019] - * UMLS:C0694595 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4019] + * NeuroNames:151 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4019 ] + * UMLS:C0694595 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4019 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003005.md b/md/UBERON/05/UBERON_0003005.md index c356d5570f..82c9294b90 100644 --- a/md/UBERON/05/UBERON_0003005.md +++ b/md/UBERON/05/UBERON_0003005.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003005 * *Label* = dorsal longitudinal fasciculus of midbrain - * *Definition* = A dorsal longitudinal fasciculus that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal longitudinal fasciculus that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bundle of Schutz of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus of Schutz of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain dorsal longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior longitudinal fasciculus of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dlfmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_893[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsal longitudinal fasciculus of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:525] - * fasciculus longitudinalis dorsalis (mesencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:525[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bundle of Schutz of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus of Schutz of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain dorsal longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior longitudinal fasciculus of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dlfmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_893, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsal longitudinal fasciculus of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:525 ] + * fasciculus longitudinalis dorsalis (mesencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:525, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dlfmb * FMA:72453 * NIF_GrossAnatomy:birnlex_893 - * NeuroNames:525 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_893] - * UMLS:C0262222 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_893] + * NeuroNames:525 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_893 ] + * UMLS:C0262222 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_893 ] ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal longitudinal fasciculus](../../UBERON/45/UBERON_0003045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003105.md b/md/UBERON/05/UBERON_0003105.md index a03bf069f2..c4c61d8a35 100644 --- a/md/UBERON/05/UBERON_0003105.md +++ b/md/UBERON/05/UBERON_0003105.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003105 * *Label* = dorsal lateral plate region - * *Definition* = Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9618755[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9618755, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * DA-PCV joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005028] + * DA-PCV joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005028 ] * DLP - * DP joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005028] - * dorsal aorta - posterior cardinal vein joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005028] + * DP joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005028 ] + * dorsal aorta - posterior cardinal vein joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005028 ] * ventral wall of dorsal aorta * AGM * AGM region - * DA roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005028] + * DA roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005028 ] * aorta gonad mesonephros region * aorta-gonads-mesonephros region @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003205.md b/md/UBERON/05/UBERON_0003205.md index 0755c1a703..791fd7a8cf 100644 --- a/md/UBERON/05/UBERON_0003205.md +++ b/md/UBERON/05/UBERON_0003205.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00005811 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000151 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Articulation - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003205 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_0003405.md b/md/UBERON/05/UBERON_0003405.md index 186c3b9291..12928fc18f 100644 --- a/md/UBERON/05/UBERON_0003405.md +++ b/md/UBERON/05/UBERON_0003405.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003405 * *Label* = lobar bronchus of left lung - * *Definition* = A lobar bronchus that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003505.md b/md/UBERON/05/UBERON_0003505.md index 08ae6a6a60..ad0c7d03e5 100644 --- a/md/UBERON/05/UBERON_0003505.md +++ b/md/UBERON/05/UBERON_0003505.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003505 * *Label* = trachea blood vessel - * *Definition* = A blood vessel that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003525 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003605.md b/md/UBERON/05/UBERON_0003605.md index 1edab1d082..571e77965f 100644 --- a/md/UBERON/05/UBERON_0003605.md +++ b/md/UBERON/05/UBERON_0003605.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003605 * *Label* = eye skin gland - * *Definition* = A skin gland that is part of a camera-type eye [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skin gland that is part of a camera-type eye [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * camera-type eye skin gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * camera-type eye skin glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * camera-type eye skin glands set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin gland of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin gland of vertebrate eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin glands of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin glands of vertebrate eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin glands set of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin glands set of vertebrate eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate eye skin gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate eye skin glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate eye skin glands set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * camera-type eye skin gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * camera-type eye skin glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * camera-type eye skin glands set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin gland of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin gland of vertebrate eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin glands of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin glands of vertebrate eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin glands set of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin glands set of vertebrate eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate eye skin gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate eye skin glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate eye skin glands set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [skin gland](../../UBERON/19/UBERON_0002419.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003705.md b/md/UBERON/05/UBERON_0003705.md index 062122751f..21615c96f3 100644 --- a/md/UBERON/05/UBERON_0003705.md +++ b/md/UBERON/05/UBERON_0003705.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003705 * *Label* = Meckel's diverticulum - * *Definition* = a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meckel's_diverticulum] + * *Definition* = a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meckel's_diverticulum ] * *Comment* = AO notes: finding in ncit; GALT in chickens ## Synonyms - * Meckel's diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14967] - * diverticulum of Meckel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14967] - * ileal diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14967] - * Meckels diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:317] - * meckel diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:317] + * Meckel's diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14967 ] + * diverticulum of Meckel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14967 ] + * ileal diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14967 ] + * Meckels diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:317 ] + * meckel diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:317 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0003905.md b/md/UBERON/05/UBERON_0003905.md index 3b68c7493e..6fedf9be25 100644 --- a/md/UBERON/05/UBERON_0003905.md +++ b/md/UBERON/05/UBERON_0003905.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003905 * *Label* = bursal follicle - * *Definition* = Follicle within the plicae of bursa of Fabricius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * *Definition* = Follicle within the plicae of bursa of Fabricius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004105.md b/md/UBERON/05/UBERON_0004105.md index a45f9f9c9b..a52da15021 100644 --- a/md/UBERON/05/UBERON_0004105.md +++ b/md/UBERON/05/UBERON_0004105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004105 * *Label* = subungual region - * *Definition* = Region beneath a nail or claw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Region beneath a nail or claw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Consider merging with nailbed ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = subungual - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004205.md b/md/UBERON/05/UBERON_0004205.md index ea6100834e..34b82ae7cf 100644 --- a/md/UBERON/05/UBERON_0004205.md +++ b/md/UBERON/05/UBERON_0004205.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004205 * *Label* = inner medullary collecting duct - * *Definition* = The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072061] + * *Definition* = The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072061 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004405.md b/md/UBERON/05/UBERON_0004405.md index 3dd88faaeb..b5c7d392db 100644 --- a/md/UBERON/05/UBERON_0004405.md +++ b/md/UBERON/05/UBERON_0004405.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004405 * *Label* = distal epiphysis of tibia - * *Definition* = A distal epiphysis that is part of a tibia [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a tibia [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33116] - * lower end of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33116] + * distal end of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33116 ] + * lower end of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33116 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004505.md b/md/UBERON/05/UBERON_0004505.md index 1d76d238fd..9276387180 100644 --- a/md/UBERON/05/UBERON_0004505.md +++ b/md/UBERON/05/UBERON_0004505.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004505 * *Label* = skeletal muscle tissue of orbicularis oculi - * *Definition* = A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a orbicularis oculi [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [orbicularis oculi](../../UBERON/78/UBERON_0001578.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004605.md b/md/UBERON/05/UBERON_0004605.md index d2f96c3c24..38ac3113d8 100644 --- a/md/UBERON/05/UBERON_0004605.md +++ b/md/UBERON/05/UBERON_0004605.md @@ -7,14 +7,15 @@ ## Synonyms - * fifth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7776] + * costa V [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fifth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7776 ] ## Cross-references * FMA:7776 * MA:0001405 * SCTID:244660005 - * UMLS:C1711376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_5] + * UMLS:C1711376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_5 ] * ncithesaurus:Rib_5 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004705.md b/md/UBERON/05/UBERON_0004705.md index 088743d464..f5c0b49810 100644 --- a/md/UBERON/05/UBERON_0004705.md +++ b/md/UBERON/05/UBERON_0004705.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004705 * *Label* = fenestra - * *Definition* = an opening in the skull or other bones[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fenestra] + * *Definition* = an opening in the skull or other bones[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fenestra ] * *Comment* = TODO check fenestra vs fossa. fenestra = hole, fossa = depression with bottom? ## Synonyms - * fenestrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * fenestrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004805.md b/md/UBERON/05/UBERON_0004805.md index d527d904ba..1c2013b179 100644 --- a/md/UBERON/05/UBERON_0004805.md +++ b/md/UBERON/05/UBERON_0004805.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004805 * *Label* = seminal vesicle epithelium - * *Definition* = An epithelium that is part of a seminal vesicle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a seminal vesicle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal vesicle epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal vesicle epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * CALOHA:TS-2069 * EMAPA:29771 * MA:0001745 - * UMLS:C1710049 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminal_Vesicle_Epithelium] + * UMLS:C1710049 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminal_Vesicle_Epithelium ] * ncithesaurus:Seminal_Vesicle_Epithelium ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0004905.md b/md/UBERON/05/UBERON_0004905.md index 3b6d9e8878..5ee985fc10 100644 --- a/md/UBERON/05/UBERON_0004905.md +++ b/md/UBERON/05/UBERON_0004905.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005005.md b/md/UBERON/05/UBERON_0005005.md index 03fb5f22d1..8820bbd35a 100644 --- a/md/UBERON/05/UBERON_0005005.md +++ b/md/UBERON/05/UBERON_0005005.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005005 * *Label* = mucosa of left ureter - * *Definition* = A mucosa that is part of a left ureter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a left ureter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left ureter mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left ureter mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left ureter mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left ureter organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left ureteral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17807] - * mucosa of organ of left ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left ureter mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left ureter mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left ureter mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left ureter organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left ureteral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17807 ] + * mucosa of organ of left ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left ureter](../../UBERON/23/UBERON_0001223.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005105.md b/md/UBERON/05/UBERON_0005105.md index e37b9e5d0f..343051fe74 100644 --- a/md/UBERON/05/UBERON_0005105.md +++ b/md/UBERON/05/UBERON_0005105.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005105 * *Label* = posterior mesonephric tubule - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072166] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072166 ] ## Synonyms - * caudal mesonephric tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30574] + * caudal mesonephric tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30574 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005205.md b/md/UBERON/05/UBERON_0005205.md index 0fe20e6964..4e427928c7 100644 --- a/md/UBERON/05/UBERON_0005205.md +++ b/md/UBERON/05/UBERON_0005205.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005205 * *Label* = vagina stroma - * *Definition* = A stroma that is part of a vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stroma that is part of a vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005305.md b/md/UBERON/05/UBERON_0005305.md index ecc6a072c8..8ee51ba678 100644 --- a/md/UBERON/05/UBERON_0005305.md +++ b/md/UBERON/05/UBERON_0005305.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005305 * *Label* = thyroid follicle - * *Definition* = Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004708] + * *Definition* = Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004708 ] ## Synonyms @@ -18,7 +18,7 @@ * MA:0000726 * SCTID:176685006 * TAO:0001072 - * UMLS:C0229577 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Gland_Follicle] + * UMLS:C0229577 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Gland_Follicle ] * ZFA:0001072 * ncithesaurus:Thyroid_Gland_Follicle @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005405.md b/md/UBERON/05/UBERON_0005405.md index fd5e23381c..7fb386e700 100644 --- a/md/UBERON/05/UBERON_0005405.md +++ b/md/UBERON/05/UBERON_0005405.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005405 * *Label* = pararenal fat - * *Definition* = The paranephric body (or paranephric fat or pararenal fat) is collection of adipose tissue located superficial to the renal fascia. The perirenal fat, or adipose capsule of kidney, is deep to the renal fascia but superficial to the renal capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paranephric_body] + * *Definition* = The paranephric body (or paranephric fat or pararenal fat) is collection of adipose tissue located superficial to the renal fascia. The perirenal fat, or adipose capsule of kidney, is deep to the renal fascia but superficial to the renal capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paranephric_body ] * *Comment* = TODO - split paranephric / pararenal ## Synonyms - * pararenal fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20503] - * corpus adiposum pararenale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paranephric_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paranephric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paranephric_body] - * paranephric fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002974] - * pararenal fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002974] - * pararenal fat body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002974] + * pararenal fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20503 ] + * corpus adiposum pararenale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paranephric_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paranephric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paranephric_body ] + * paranephric fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002974 ] + * pararenal fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002974 ] + * pararenal fat body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002974 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005605.md b/md/UBERON/05/UBERON_0005605.md index 6daaf2f3ee..8f9773fa88 100644 --- a/md/UBERON/05/UBERON_0005605.md +++ b/md/UBERON/05/UBERON_0005605.md @@ -6,7 +6,7 @@ ## Synonyms - * intrahepatic part of the hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000216] + * intrahepatic part of the hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000216 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005705.md b/md/UBERON/05/UBERON_0005705.md index ab6bbba206..91901fde51 100644 --- a/md/UBERON/05/UBERON_0005705.md +++ b/md/UBERON/05/UBERON_0005705.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005705 * *Label* = primary palate mesenchyme - * *Definition* = Mesenchyme that is part of a primary palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a primary palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [primary palate](../../UBERON/20/UBERON_0005620.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005805.md b/md/UBERON/05/UBERON_0005805.md index 8a6e69caf7..cff510460f 100644 --- a/md/UBERON/05/UBERON_0005805.md +++ b/md/UBERON/05/UBERON_0005805.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005805 * *Label* = dorsal aorta - * *Definition* = The artery in vertebrate embryos that transports blood from the aortic arches to the trunk and limbs. In adult fish it is a major artery that carries oxygenated blood from the efferent branchial arteries to branches that supply the body organ. In adult tetrapods it arises from the systemic arch[BTO]. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]. Each primitive aorta receives anteriorly a vein 'the vitelline vein' from the yolk-sac, and is prolonged backward on the lateral aspect of the notochord under the name of the dorsal aorta. The dorsal aortae give branches to the yolk-sac, and are continued backward through the body-stalk as the umbilical arteries to the villi of the chorion. The two dorsal aortae combine to become the descending aorta in later development[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004673[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035907[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_aorta[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3316981&group_id=36855&atid=440764] + * *Definition* = The artery in vertebrate embryos that transports blood from the aortic arches to the trunk and limbs. In adult fish it is a major artery that carries oxygenated blood from the efferent branchial arteries to branches that supply the body organ. In adult tetrapods it arises from the systemic arch[BTO]. The dorsal aorta is a blood vessel in a single-pass circulatory system that carries oxygenated blood from the gills to the rest of the body. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]. Each primitive aorta receives anteriorly a vein 'the vitelline vein' from the yolk-sac, and is prolonged backward on the lateral aspect of the notochord under the name of the dorsal aorta. The dorsal aortae give branches to the yolk-sac, and are continued backward through the body-stalk as the umbilical arteries to the villi of the chorion. The two dorsal aortae combine to become the descending aorta in later development[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004673, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035907, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_aorta, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3316981&group_id=36855&atid=440764 ] ## Synonyms - * DA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000014] - * aortae dorsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal aorta root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000264] - * dorsal aortic root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000264] - * dorsal aort [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_aorta] + * DA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000014 ] + * aortae dorsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal aorta root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000264 ] + * dorsal aortic root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000264 ] + * dorsal aort [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_aorta ] ## Cross-references @@ -52,8 +52,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of axial vasculature (TAO:0001073)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0005905.md b/md/UBERON/05/UBERON_0005905.md index 30d51860cd..5226856f84 100644 --- a/md/UBERON/05/UBERON_0005905.md +++ b/md/UBERON/05/UBERON_0005905.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005905 * *Label* = insect labrum - * *Definition* = A mouthpart of insects. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Insect_mouthparts#Labrum] + * *Definition* = A mouthpart of insects. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Insect_mouthparts#Labrum ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms - * insect labium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004104] - * labium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004104] - * labrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004104] + * insect labium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004104 ] + * labium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004104 ] + * labrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004104 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006005.md b/md/UBERON/05/UBERON_0006005.md index 36e8574e70..d9cfb35a4e 100644 --- a/md/UBERON/05/UBERON_0006005.md +++ b/md/UBERON/05/UBERON_0006005.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006005 * *Label* = hair follicle isthmus - * *Definition* = the middle part of the hair follicle that extends from the sebaceous duct to the bulge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010694] + * *Definition* = the middle part of the hair follicle that extends from the sebaceous duct to the bulge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010694 ] ## Synonyms - * isthmus of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70723] + * isthmus of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70723 ] ## Cross-references * FMA:70723 - * UMLS:C1182701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair_Follicle_Isthmus] + * UMLS:C1182701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair_Follicle_Isthmus ] * ncithesaurus:Hair_Follicle_Isthmus ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006105.md b/md/UBERON/05/UBERON_0006105.md index 3c8d719da7..a6d7b195cd 100644 --- a/md/UBERON/05/UBERON_0006105.md +++ b/md/UBERON/05/UBERON_0006105.md @@ -6,7 +6,7 @@ ## Synonyms - * basis modioli cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75640[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basis modioli cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75640, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:75640 * *[consider](../../er/oboInOwl#consider.md)* = NIF_GrossAnatomy:birnlex_2522 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006105 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_0006205.md b/md/UBERON/05/UBERON_0006205.md index db90206404..05e1babf9d 100644 --- a/md/UBERON/05/UBERON_0006205.md +++ b/md/UBERON/05/UBERON_0006205.md @@ -7,8 +7,8 @@ ## Synonyms - * cooper's ligament (groin) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20188] - * ligamentum pectineale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20188] + * cooper's ligament (groin) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20188 ] + * ligamentum pectineale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20188 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006305.md b/md/UBERON/05/UBERON_0006305.md index 76f44c91d2..0c7185aab8 100644 --- a/md/UBERON/05/UBERON_0006305.md +++ b/md/UBERON/05/UBERON_0006305.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006305 * *Label* = tunica vasculosa lentis - * *Definition* = an extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vasculosa_lentis] + * *Definition* = an extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vasculosa_lentis ] ## Synonyms @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Soon after it forms, the mammalian lens becomes invested with a network of capillaries. (...) The capillary network on the posterior of the lens is the tunica vasculosa lentis (TVL).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006505.md b/md/UBERON/05/UBERON_0006505.md index 0db443dab8..1613fe1fd6 100644 --- a/md/UBERON/05/UBERON_0006505.md +++ b/md/UBERON/05/UBERON_0006505.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006505 * *Label* = palmar hand interosseous muscle - * *Definition* = The palmar interossei (interossei volares) are small muscles in the hand that lie on the anterior aspect of the metacarpals. They are smaller than the dorsal interossei of the hand, which lie between the metacarpals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_interossei_muscles] + * *Definition* = The palmar interossei (interossei volares) are small muscles in the hand that lie on the anterior aspect of the metacarpals. They are smaller than the dorsal interossei of the hand, which lie between the metacarpals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_interossei_muscles ] ## Synonyms * musculi interossei palmares - * palmar interosseous of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37419] - * musculi interossei palmares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_interossei_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palmar interosseous of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37419 ] + * musculi interossei palmares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_interossei_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:37419 * MA:0002315 - * UMLS:C1709453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palmar_Hand_Interosseus_Muscle] + * UMLS:C1709453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palmar_Hand_Interosseus_Muscle ] * Wikipedia:Palmar_interossei_muscles * http://upload.wikimedia.org/wikipedia/commons/3/39/Gray429.png * ncithesaurus:Palmar_Hand_Interosseus_Muscle @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006605.md b/md/UBERON/05/UBERON_0006605.md index 41c7a2238a..e496fac8cd 100644 --- a/md/UBERON/05/UBERON_0006605.md +++ b/md/UBERON/05/UBERON_0006605.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006605 * *Label* = tectum synoticum - * *Definition* = Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001506] + * *Definition* = Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001506 ] * *Comment* = AAO def - "Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales." [AAO:0010129]. In TAO/ZFA this gives rise to supraoccipital and sphenotic // posterior tectum synoticum in humans - a skull roof element of the chondrocranium - temporarily exists in the territory of the interparietal during fetal life, and may be resposible for the sutura mendosa [PMC1259625] ## Synonyms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of otic and occipital (AAO:0000993)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006805.md b/md/UBERON/05/UBERON_0006805.md index 567658196d..0f476a37ae 100644 --- a/md/UBERON/05/UBERON_0006805.md +++ b/md/UBERON/05/UBERON_0006805.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006805 * *Label* = sternal end of clavicle - * *Definition* = Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000812] + * *Definition* = Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000812 ] ## Synonyms - * extremitas sternalis (Clavicula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23297] - * medial end of clavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23297] - * extremitas medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000812] - * medial end [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000812] + * extremitas sternalis (Clavicula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23297 ] + * medial end of clavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23297 ] + * extremitas medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000812 ] + * medial end [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000812 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0006905.md b/md/UBERON/05/UBERON_0006905.md index 07836fdc4f..21f323b0af 100644 --- a/md/UBERON/05/UBERON_0006905.md +++ b/md/UBERON/05/UBERON_0006905.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006905 * *Label* = mandibular process mesenchyme - * *Definition* = Mesenchyme that is part of a mandibular prominence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a mandibular prominence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of mandibular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17357] - * mesenchyme of mandibular prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * mesenchyme of mandibular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17357 ] + * mesenchyme of mandibular prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mandibular prominence](../../UBERON/67/UBERON_0005867.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0007005.md b/md/UBERON/05/UBERON_0007005.md index 25e7a2a80f..0846407ff2 100644 --- a/md/UBERON/05/UBERON_0007005.md +++ b/md/UBERON/05/UBERON_0007005.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007005 * *Label* = cardiac mesoderm - * *Definition* = the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000235[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/cardiogenic-mesoderm.html] + * *Definition* = the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000235, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/cardiogenic-mesoderm.html ] * *Comment* = consider FBbt:00005541 ## Synonyms - * cardiogenic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/cardiogenic-mesoderm.html] - * heart primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000235] + * cardiogenic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/cardiogenic-mesoderm.html ] + * heart primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000235 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0007105.md b/md/UBERON/05/UBERON_0007105.md index 31c29638ec..a3c56b347c 100644 --- a/md/UBERON/05/UBERON_0007105.md +++ b/md/UBERON/05/UBERON_0007105.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007105 * *Label* = vitelline duct - * *Definition* = In the human embryo, the vitelline duct, also known as the omphalomesenteric duct, is a long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. It appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_duct] + * *Definition* = In the human embryo, the vitelline duct, also known as the omphalomesenteric duct, is a long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. It appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_duct ] ## Synonyms * ductus vitellinus - * embryonic yolk stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_duct] - * omphalomesenteric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A16.254.891] - * omphalomesenteric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_duct] - * yolk duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_duct] - * yolk-stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_duct] + * embryonic yolk stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_duct ] + * omphalomesenteric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A16.254.891 ] + * omphalomesenteric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_duct ] + * yolk duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_duct ] + * yolk-stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_duct ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0007805.md b/md/UBERON/05/UBERON_0007805.md index ba9758c387..9631c3f4a2 100644 --- a/md/UBERON/05/UBERON_0007805.md +++ b/md/UBERON/05/UBERON_0007805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007805 * *Label* = synsacrum - * *Definition* = The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synsacrum] + * *Definition* = The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synsacrum ] * *Comment* = produced by fusion of last thoracics, all lumbars, all sacrals, & first few caudals; ## Synonyms @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass portion of (AAO:0010428)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0008305.md b/md/UBERON/05/UBERON_0008305.md index 7be610777f..3adff43463 100644 --- a/md/UBERON/05/UBERON_0008305.md +++ b/md/UBERON/05/UBERON_0008305.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008305 * *Label* = outer fibrous layer of perichondrium - * *Definition* = The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:The_Free_Encyclopedia] + * *Definition* = The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:The_Free_Encyclopedia ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0008605.md b/md/UBERON/05/UBERON_0008605.md index c9b86ff439..ec76bfd19e 100644 --- a/md/UBERON/05/UBERON_0008605.md +++ b/md/UBERON/05/UBERON_0008605.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008605 * *Label* = tragicus muscle - * *Definition* = The Tragicus is a short, flattened vertical band on the lateral surface of the tragus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tragicus] + * *Definition* = The Tragicus is a short, flattened vertical band on the lateral surface of the tragus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tragicus ] ## Synonyms - * tragicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48974] - * musculus tragicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tragicus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tragicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48974 ] + * musculus tragicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tragicus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tragicus muscle ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0008805.md b/md/UBERON/05/UBERON_0008805.md index e59cead777..5200ccbfce 100644 --- a/md/UBERON/05/UBERON_0008805.md +++ b/md/UBERON/05/UBERON_0008805.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008805 * *Label* = gingival groove - * *Definition* = The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gingival_sulcus] + * *Definition* = The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gingival_sulcus ] ## Synonyms - * gingival sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74580] - * sulcus gingivalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus gingivalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gingival_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gingival sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74580 ] + * sulcus gingivalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus gingivalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gingival_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [adjacent to](../../RO/20/RO_0002220.md) some [gingiva](../../UBERON/28/UBERON_0001828.md) and [anatomical line](../../UBERON/00/UBERON_0006800.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0009005.md b/md/UBERON/05/UBERON_0009005.md index 15eaee6e5e..5c1fde2926 100644 --- a/md/UBERON/05/UBERON_0009005.md +++ b/md/UBERON/05/UBERON_0009005.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009005 * *Label* = femorotibial joint - * *Definition* = One of the two primary bendings of a typical leg, pertains to the femur and the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004396] + * *Definition* = One of the two primary bendings of a typical leg, pertains to the femur and the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004396 ] * *Comment* = Editor notes: proposed OWL definition: skeletal join that connects ONLY tibia and femur ## Synonyms * femoratibial joint - * tibiofemoral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43571] + * tibiofemoral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43571 ] * knee ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0009205.md b/md/UBERON/05/UBERON_0009205.md index 1a213448b1..128149ee14 100644 --- a/md/UBERON/05/UBERON_0009205.md +++ b/md/UBERON/05/UBERON_0009205.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009205 * *Label* = lateral nasal process mesenchyme - * *Definition* = Mesenchyme that is part of a lateral nasal prominence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a lateral nasal prominence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of latero-nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16807] + * mesenchyme of latero-nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16807 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral nasal prominence](../../UBERON/67/UBERON_0004067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0009505.md b/md/UBERON/05/UBERON_0009505.md index 3015f01e0b..04e8e8e76f 100644 --- a/md/UBERON/05/UBERON_0009505.md +++ b/md/UBERON/05/UBERON_0009505.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009505 * *Label* = associated mesenchyme of trachea - * *Definition* = Mesenchyme that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010005.md b/md/UBERON/05/UBERON_0010005.md index b2a2c153b6..cdbe7ba629 100644 --- a/md/UBERON/05/UBERON_0010005.md +++ b/md/UBERON/05/UBERON_0010005.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010005 * *Label* = placental labyrinth villous - * *Definition* = the vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011522] + * *Definition* = the vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011522 ] ## Synonyms * villous of placental labyrinth - * placental labyrinth villi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * placental labyrinth villi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010205.md b/md/UBERON/05/UBERON_0010205.md index 3161979b1d..277cc24a44 100644 --- a/md/UBERON/05/UBERON_0010205.md +++ b/md/UBERON/05/UBERON_0010205.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010205 * *Label* = mesencephalic vein - * *Definition* = One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004174[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=97378] + * *Definition* = One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004174, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=97378 ] * *Comment* = Editor notes: review this term, check taxon scope; note FMA has specific subtypes ## Synonyms - * vena mesencephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] - * venae mesencephalicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * msv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005092] + * vena mesencephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae ] + * venae mesencephalicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * msv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005092 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010305.md b/md/UBERON/05/UBERON_0010305.md index 1026650949..d85d009c87 100644 --- a/md/UBERON/05/UBERON_0010305.md +++ b/md/UBERON/05/UBERON_0010305.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010305 * *Label* = region of conjunctiva - * *Definition* = The conjunctiva is divided into 3 parts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conjunctiva#Gross_anatomy] + * *Definition* = The conjunctiva is divided into 3 parts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conjunctiva#Gross_anatomy ] ## Synonyms - * conjunctiva subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59023] + * conjunctiva subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59023 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ part](../../UBERON/64/UBERON_0000064.md) and [part_of](../../BFO/50/BFO_0000050.md) some [conjunctiva](../../UBERON/11/UBERON_0001811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010405.md b/md/UBERON/05/UBERON_0010405.md index 9081d68f92..21d8c1c7ea 100644 --- a/md/UBERON/05/UBERON_0010405.md +++ b/md/UBERON/05/UBERON_0010405.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010405 * *Label* = spinal cord lateral motor column - * *Definition* = Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010505.md b/md/UBERON/05/UBERON_0010505.md index f865c3e54c..f5b6015a03 100644 --- a/md/UBERON/05/UBERON_0010505.md +++ b/md/UBERON/05/UBERON_0010505.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010505 * *Label* = periosteal dura mater - * *Definition* = The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * outer layer of dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231547] + * outer layer of dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231547 ] * outer periosteal layer of dura mater - * periosteal dura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231547] - * periosteal layer of dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231547] + * periosteal dura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231547 ] + * periosteal layer of dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231547 ] ## Cross-references * FMA:231547 - * UMLS:C1518991 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Periosteal_Layer_of_the_Dura_Mater] + * UMLS:C1518991 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Periosteal_Layer_of_the_Dura_Mater ] * ncithesaurus:Periosteal_Layer_of_the_Dura_Mater ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0010905.md b/md/UBERON/05/UBERON_0010905.md index f6e6eb773d..40d73b4b51 100644 --- a/md/UBERON/05/UBERON_0010905.md +++ b/md/UBERON/05/UBERON_0010905.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011005.md b/md/UBERON/05/UBERON_0011005.md index 19413ae7b1..2715751a4d 100644 --- a/md/UBERON/05/UBERON_0011005.md +++ b/md/UBERON/05/UBERON_0011005.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011005 * *Label* = endocardium of auricle - * *Definition* = An endocardium that is part of a atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocardium that is part of a atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note in EHDAA2 this is an epithelium that is part of the endocardium ## Synonyms - * auricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13234] + * auricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13234 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [atrium auricular region](../../UBERON/18/UBERON_0006618.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011205.md b/md/UBERON/05/UBERON_0011205.md index 9f0713151e..33f5fb8021 100644 --- a/md/UBERON/05/UBERON_0011205.md +++ b/md/UBERON/05/UBERON_0011205.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011205 * *Label* = carpometacarpus - * *Definition* = The carpometacarpus is the fusion of the carpal and metacarpal bone, essentially a single fused bone between the wrist and the knuckles. It is a smallish bone in most birds, generally flattened and with a large hole in the middle. In flightless birds, however, its shape may be slightly different, or it might be absent entirely. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpus] + * *Definition* = The carpometacarpus is the fusion of the carpal and metacarpal bone, essentially a single fused bone between the wrist and the knuckles. It is a smallish bone in most birds, generally flattened and with a large hole in the middle. In flightless birds, however, its shape may be slightly different, or it might be absent entirely. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpus ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011205 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011305.md b/md/UBERON/05/UBERON_0011305.md index 6f3cdbf8d7..cbc8921127 100644 --- a/md/UBERON/05/UBERON_0011305.md +++ b/md/UBERON/05/UBERON_0011305.md @@ -6,7 +6,7 @@ ## Synonyms - * temporalis, superficial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * temporalis, superficial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011605.md b/md/UBERON/05/UBERON_0011605.md index be2fccde63..17b008d1f7 100644 --- a/md/UBERON/05/UBERON_0011605.md +++ b/md/UBERON/05/UBERON_0011605.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011605 * *Label* = supracoracoideus muscle of wing - * *Definition* = 'A muscle in the bird's thorax region that originates from carina of the sternum, furcula, and sternal ribs and inserts onto proximal dorsal surface of the humerus. It acts as a primary elevator of the wing in upstroke. [Manual of Ornithology: Avian Structure and Function, by Proctor and Lynch, 1998]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ID:KFC0000604[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Supracoracoideus#Muscular_system] + * *Definition* = 'A muscle in the bird's thorax region that originates from carina of the sternum, furcula, and sternal ribs and inserts onto proximal dorsal surface of the humerus. It acts as a primary elevator of the wing in upstroke. [Manual of Ornithology: Avian Structure and Function, by Proctor and Lynch, 1998]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ID:KFC0000604, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Supracoracoideus#Muscular_system ] * *Comment* = Action: levator of the wing ## Synonyms - * pectoralis minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ID:KFC0000604] + * pectoralis minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ID:KFC0000604 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011805.md b/md/UBERON/05/UBERON_0011805.md index 40c01dcc7a..4dfbd16d26 100644 --- a/md/UBERON/05/UBERON_0011805.md +++ b/md/UBERON/05/UBERON_0011805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011805 * *Label* = cavity of feather follicle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather follicle](../../UBERON/82/UBERON_0011782.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0011905.md b/md/UBERON/05/UBERON_0011905.md index 6927edff1d..3cf8b291ca 100644 --- a/md/UBERON/05/UBERON_0011905.md +++ b/md/UBERON/05/UBERON_0011905.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011905 * *Label* = plantaris - * *Definition* = Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plantaris_muscle] + * *Definition* = Plantaris is a vestigial structure and one of the superficial muscles of the posterior crural compartment of the leg. It is innervated by the tibial nerve (S1, S2) . It is composed of a thin muscle belly and a long thin tendon. It is approximately 2-4 inches long, and is absent in 7 - 10% of the human population. It is one of the plantar flexors in the superior compartment of the leg along with the gastrocnemius, and soleus. The plantaris is considered an unimportant muscle, it mainly acts with gastrocnemius[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plantaris_muscle ] * *Comment* = Editor notes: todo - coordinate with phenoscape-ext on representation of amphibian plantaris longus and profundus ## Synonyms - * musculus plantaris [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plantaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22543] + * musculus plantaris [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plantaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22543 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011905 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0012105.md b/md/UBERON/05/UBERON_0012105.md index e0bf248b81..4b5bdd45b1 100644 --- a/md/UBERON/05/UBERON_0012105.md +++ b/md/UBERON/05/UBERON_0012105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012105 * *Label* = baleen plate - * *Definition* = a keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:baleen] + * *Definition* = a keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:baleen ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0012305.md b/md/UBERON/05/UBERON_0012305.md index 9cb0b8eed7..165b9bc7bd 100644 --- a/md/UBERON/05/UBERON_0012305.md +++ b/md/UBERON/05/UBERON_0012305.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012305 * *Label* = marginal cutaneous pouch of ear - * *Definition* = A fold of skin at the caudal border of the auricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9783899930993] + * *Definition* = A fold of skin at the caudal border of the auricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9783899930993 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012305 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0013505.md b/md/UBERON/05/UBERON_0013505.md index f5a8a620ee..1fcaaf9899 100644 --- a/md/UBERON/05/UBERON_0013505.md +++ b/md/UBERON/05/UBERON_0013505.md @@ -6,7 +6,7 @@ ## Synonyms - * cervical vertebral cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000240] + * cervical vertebral cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000240 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0013605.md b/md/UBERON/05/UBERON_0013605.md index aefd993ffc..983cbae9fc 100644 --- a/md/UBERON/05/UBERON_0013605.md +++ b/md/UBERON/05/UBERON_0013605.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0013705.md b/md/UBERON/05/UBERON_0013705.md index 7569627339..0561b2f511 100644 --- a/md/UBERON/05/UBERON_0013705.md +++ b/md/UBERON/05/UBERON_0013705.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013705 * *Label* = fascia of Scarpa - * *Definition* = The deep layer (fascia of Scarpa) is a layer of the anterior abdominal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Scarpa] + * *Definition* = The deep layer (fascia of Scarpa) is a layer of the anterior abdominal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Scarpa ] ## Synonyms - * Colles' fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19923] - * Scarpa's fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19923] - * deep layer of superficial fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19923] - * membranous layer of subcutaneous tissue of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19923] - * membranous layer of superficial fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19923] - * stratum membranosum telae subcutaneae abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * Scarpa's fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Scarpa] - * fascia of scarpa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Scarpa] + * Colles' fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19923 ] + * Scarpa's fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19923 ] + * deep layer of superficial fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19923 ] + * membranous layer of subcutaneous tissue of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19923 ] + * membranous layer of superficial fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19923 ] + * stratum membranosum telae subcutaneae abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * Scarpa's fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Scarpa ] + * fascia of scarpa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Scarpa ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0014405.md b/md/UBERON/05/UBERON_0014405.md index 7e5ace4c75..be256913cb 100644 --- a/md/UBERON/05/UBERON_0014405.md +++ b/md/UBERON/05/UBERON_0014405.md @@ -7,7 +7,7 @@ ## Synonyms - * nymph [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000954] + * nymph [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000954 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of various immature insects; especially: a larva of an insect (as a grasshopper, true bug, or mayfly) with incomplete metamorphosis that differs from the imago especially in size and in its incompletely developed wings and genitalia[BTO:0000954]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014405 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0014505.md b/md/UBERON/05/UBERON_0014505.md index 1df8fbe9c5..77447efcef 100644 --- a/md/UBERON/05/UBERON_0014505.md +++ b/md/UBERON/05/UBERON_0014505.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014505 * *Label* = proximal phalanx of digit 5 - * *Definition* = A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal phalanx that is part of a autopod digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digit 5](../../UBERON/52/UBERON_0006052.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014505 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0014605.md b/md/UBERON/05/UBERON_0014605.md index bc2a1e0051..ff66376f13 100644 --- a/md/UBERON/05/UBERON_0014605.md +++ b/md/UBERON/05/UBERON_0014605.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014605 * *Label* = fundus striati - * *Definition* = The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144261] + * *Definition* = The ventral portion of the dorsal striatum, linking the caudate nucleus and the putamen anteriorly (adapted from Wikipedia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144261 ] ## Synonyms - * fundus striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144261] - * fundus of striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FS] - * fundus of the striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144261] - * striatal fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144261] + * fundus striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144261 ] + * fundus of striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FS ] + * fundus of the striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144261 ] + * striatal fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144261 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014605 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0014705.md b/md/UBERON/05/UBERON_0014705.md index 482b3a19d9..269c77e894 100644 --- a/md/UBERON/05/UBERON_0014705.md +++ b/md/UBERON/05/UBERON_0014705.md @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median lingual swelling](../../UBERON/56/UBERON_0006756.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014705 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0014805.md b/md/UBERON/05/UBERON_0014805.md index 31ba8425f2..d7cde69da5 100644 --- a/md/UBERON/05/UBERON_0014805.md +++ b/md/UBERON/05/UBERON_0014805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014805 * *Label* = inferior nuchal line - * *Definition* = Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_lines] + * *Definition* = Of the nuchal lines, the one running from the middle of the median line is the inferior nuchal line. Attached are the Obliquus capitis superior muscle, Rectus capitis posterior major muscle, and Rectus capitis posterior minor muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_lines ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014805 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0015005.md b/md/UBERON/05/UBERON_0015005.md index ccda4cadfe..cea8e4f794 100644 --- a/md/UBERON/05/UBERON_0015005.md +++ b/md/UBERON/05/UBERON_0015005.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015005 * *Label* = vertebra endochondral element - * *Definition* = A vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [vertebra cartilage element](../../UBERON/94/UBERON_0011094.md)or[vertebra pre-cartilage condensation](../../UBERON/95/UBERON_0011095.md)or[vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_0015105.md b/md/UBERON/05/UBERON_0015105.md index a6bd696550..11462f8b7b 100644 --- a/md/UBERON/05/UBERON_0015105.md +++ b/md/UBERON/05/UBERON_0015105.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015105 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_1000005.md b/md/UBERON/05/UBERON_1000005.md index 34faf3249b..78a8decb6d 100644 --- a/md/UBERON/05/UBERON_1000005.md +++ b/md/UBERON/05/UBERON_1000005.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000005 * *Label* = external ear margin - * *Definition* = Subdivision of the head consisting of the area along the edge of the external ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the area along the edge of the external ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000005 + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_1500005.md b/md/UBERON/05/UBERON_1500005.md index ae03a28e1d..15587b8123 100644 --- a/md/UBERON/05/UBERON_1500005.md +++ b/md/UBERON/05/UBERON_1500005.md @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2000205.md b/md/UBERON/05/UBERON_2000205.md index ab97d27455..41b9b78649 100644 --- a/md/UBERON/05/UBERON_2000205.md +++ b/md/UBERON/05/UBERON_2000205.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2000305.md b/md/UBERON/05/UBERON_2000305.md index 048e7dc7bd..5761e512fb 100644 --- a/md/UBERON/05/UBERON_2000305.md +++ b/md/UBERON/05/UBERON_2000305.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2000805.md b/md/UBERON/05/UBERON_2000805.md index 071653164b..588802e980 100644 --- a/md/UBERON/05/UBERON_2000805.md +++ b/md/UBERON/05/UBERON_2000805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000805 * *Label* = myotome somite 23 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001005.md b/md/UBERON/05/UBERON_2001005.md index 148810fb71..56f5b45abe 100644 --- a/md/UBERON/05/UBERON_2001005.md +++ b/md/UBERON/05/UBERON_2001005.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001005[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001005, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_2001305.md b/md/UBERON/05/UBERON_2001305.md index 5c47e4fa4c..2e00cb5fa0 100644 --- a/md/UBERON/05/UBERON_2001305.md +++ b/md/UBERON/05/UBERON_2001305.md @@ -6,8 +6,8 @@ ## Synonyms - * gX4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001305] - * nodose ganglion 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001305] + * gX4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001305 ] + * nodose ganglion 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001305 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001505.md b/md/UBERON/05/UBERON_2001505.md index bcc8841e18..f37a9673ab 100644 --- a/md/UBERON/05/UBERON_2001505.md +++ b/md/UBERON/05/UBERON_2001505.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001505 * *Label* = taenia marginalis anterior - * *Definition* = Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * orbital cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001505] + * orbital cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001505 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001605.md b/md/UBERON/05/UBERON_2001605.md index 10d2bd4f0c..cba2fa494c 100644 --- a/md/UBERON/05/UBERON_2001605.md +++ b/md/UBERON/05/UBERON_2001605.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001705.md b/md/UBERON/05/UBERON_2001705.md index ed40b92bf7..a645a2bf48 100644 --- a/md/UBERON/05/UBERON_2001705.md +++ b/md/UBERON/05/UBERON_2001705.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001705 * *Label* = infraorbital 10 - * *Definition* = Infraorbital that is the tenth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the tenth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001805.md b/md/UBERON/05/UBERON_2001805.md index dc38a5e776..10de3d150b 100644 --- a/md/UBERON/05/UBERON_2001805.md +++ b/md/UBERON/05/UBERON_2001805.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001805 * *Label* = articular bone - * *Definition* = Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The articular fuses with the angular bone in clupeocephalans forming the anguloarticular. ## Synonyms - * articular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001805] + * articular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001805 ] ## Cross-references @@ -35,7 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO] * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2001905.md b/md/UBERON/05/UBERON_2001905.md index ddb14a8943..8721d41630 100644 --- a/md/UBERON/05/UBERON_2001905.md +++ b/md/UBERON/05/UBERON_2001905.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2002005.md b/md/UBERON/05/UBERON_2002005.md index 6b12ff7654..cdd22cd630 100644 --- a/md/UBERON/05/UBERON_2002005.md +++ b/md/UBERON/05/UBERON_2002005.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002005 * *Label* = canal plate - * *Definition* = Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The number of canal plates present can be variable. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2002105.md b/md/UBERON/05/UBERON_2002105.md index b20ff50839..47a6f11f18 100644 --- a/md/UBERON/05/UBERON_2002105.md +++ b/md/UBERON/05/UBERON_2002105.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002105 * *Label* = electrosensory lateral line lobe - * *Definition* = Anatomical structure located in the hindbrain that receives primary electroreceptor input. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical structure located in the hindbrain that receives primary electroreceptor input. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. ## Synonyms - * ELL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002105] + * ELL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002105 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_2005205.md b/md/UBERON/05/UBERON_2005205.md index ce2960056a..d782b8753c 100644 --- a/md/UBERON/05/UBERON_2005205.md +++ b/md/UBERON/05/UBERON_2005205.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 2 lateral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005205] + * rostral medial 2 lateral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005205 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_2007005.md b/md/UBERON/05/UBERON_2007005.md index dc1607028e..03c4b03a05 100644 --- a/md/UBERON/05/UBERON_2007005.md +++ b/md/UBERON/05/UBERON_2007005.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007005 * *Label* = hemal prezygapophysis - * *Definition* = Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * haemal prezygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007005] - * hemal prezygopophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007005] + * haemal prezygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007005 ] + * hemal prezygopophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007005 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2001380 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3000405.md b/md/UBERON/05/UBERON_3000405.md index 44ac16b161..b65fff0b50 100644 --- a/md/UBERON/05/UBERON_3000405.md +++ b/md/UBERON/05/UBERON_3000405.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3000505.md b/md/UBERON/05/UBERON_3000505.md index 459fc18f1c..41acdd5796 100644 --- a/md/UBERON/05/UBERON_3000505.md +++ b/md/UBERON/05/UBERON_3000505.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000505 * *Label* = processus pterygoideus of maxilla - * *Definition* = Posterior end of the pars palatina of the maxilla that is in contact with the anterior ramus of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior end of the pars palatina of the maxilla that is in contact with the anterior ramus of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3000605.md b/md/UBERON/05/UBERON_3000605.md index 07619c3278..09fadebe3b 100644 --- a/md/UBERON/05/UBERON_3000605.md +++ b/md/UBERON/05/UBERON_3000605.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3000805.md b/md/UBERON/05/UBERON_3000805.md index 6a806fc142..e0f5345d1e 100644 --- a/md/UBERON/05/UBERON_3000805.md +++ b/md/UBERON/05/UBERON_3000805.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000805 * *Label* = carina proximalis - * *Definition* = In a zygapophysis that has ridges and sulci, the proximal ridge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a zygapophysis that has ridges and sulci, the proximal ridge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3000905.md b/md/UBERON/05/UBERON_3000905.md index 831d9a308e..3b269afcfe 100644 --- a/md/UBERON/05/UBERON_3000905.md +++ b/md/UBERON/05/UBERON_3000905.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000905 * *Label* = caput ossis cruris - * *Definition* = Proximal head of the tibiofibula that articulates with the distal head of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Proximal head of the tibiofibula that articulates with the distal head of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3001005.md b/md/UBERON/05/UBERON_3001005.md index 2dfa489c06..fab4672c9f 100644 --- a/md/UBERON/05/UBERON_3001005.md +++ b/md/UBERON/05/UBERON_3001005.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3010005.md b/md/UBERON/05/UBERON_3010005.md index 28c0299e6c..e8e8a3cffb 100644 --- a/md/UBERON/05/UBERON_3010005.md +++ b/md/UBERON/05/UBERON_3010005.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_3010105.md b/md/UBERON/05/UBERON_3010105.md index d3c5e10b46..6ae674ffa3 100644 --- a/md/UBERON/05/UBERON_3010105.md +++ b/md/UBERON/05/UBERON_3010105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010105 * *Label* = anterodorsal lateral line nerve (ADLLN) - * *Definition* = Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Sensory nerve of the anterior lateral line component. It develops from the preotic anterodorsal placode. ADLLN branches into two rami innervating orbital lines of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3010205.md b/md/UBERON/05/UBERON_3010205.md index 1a3bc43768..9eee794817 100644 --- a/md/UBERON/05/UBERON_3010205.md +++ b/md/UBERON/05/UBERON_3010205.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010205 * *Label* = postminimus - * *Definition* = A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] * *Comment* = Often consider atavistic when present in extant salamnders (Caudata) ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_3010305.md b/md/UBERON/05/UBERON_3010305.md index f793ab08ed..5827ac96f5 100644 --- a/md/UBERON/05/UBERON_3010305.md +++ b/md/UBERON/05/UBERON_3010305.md @@ -6,7 +6,7 @@ ## Synonyms - * GV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010305] + * GV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010305 ] ## Cross-references @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_3010705.md b/md/UBERON/05/UBERON_3010705.md index acbebd0908..9444342597 100644 --- a/md/UBERON/05/UBERON_3010705.md +++ b/md/UBERON/05/UBERON_3010705.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0008904 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_4000005.md b/md/UBERON/05/UBERON_4000005.md index 8f64262415..cd752a21a5 100644 --- a/md/UBERON/05/UBERON_4000005.md +++ b/md/UBERON/05/UBERON_4000005.md @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011614 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_4000105.md b/md/UBERON/05/UBERON_4000105.md index 6fbd817d2e..47d135b8af 100644 --- a/md/UBERON/05/UBERON_4000105.md +++ b/md/UBERON/05/UBERON_4000105.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000105 * *Label* = limiting layer of elasmoid scale - * *Definition* = Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] * *Comment* = Not clear if this layer is acellular, making a tissue type for now. ## Synonyms @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_4100005.md b/md/UBERON/05/UBERON_4100005.md index f6971728b1..36f6b30b95 100644 --- a/md/UBERON/05/UBERON_4100005.md +++ b/md/UBERON/05/UBERON_4100005.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_4200005.md b/md/UBERON/05/UBERON_4200005.md index b25c1e881b..2891aebcd7 100644 --- a/md/UBERON/05/UBERON_4200005.md +++ b/md/UBERON/05/UBERON_4200005.md @@ -26,8 +26,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = A.Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/05/UBERON_4200105.md b/md/UBERON/05/UBERON_4200105.md index 700f291216..896430791e 100644 --- a/md/UBERON/05/UBERON_4200105.md +++ b/md/UBERON/05/UBERON_4200105.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_4300005.md b/md/UBERON/05/UBERON_4300005.md index 511ea7fb66..e0b18af080 100644 --- a/md/UBERON/05/UBERON_4300005.md +++ b/md/UBERON/05/UBERON_4300005.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/05/UBERON_4400005.md b/md/UBERON/05/UBERON_4400005.md index af88e6c40f..e0ec2a6de2 100644 --- a/md/UBERON/05/UBERON_4400005.md +++ b/md/UBERON/05/UBERON_4400005.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4400005 * *Label* = fin ray - * *Definition* = A rod-like entity that functions in support of fin folds and fins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm[see also](../../so/rdf-schema#seeAlso.md) = + http://purl.obolibrary.org/obo/uberon/tracker/129] + * *Definition* = A rod-like entity that functions in support of fin folds and fins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm, [see also](../../so/rdf-schema#seeAlso.md) = http://purl.obolibrary.org/obo/uberon/tracker/129 ] ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0000006.md b/md/UBERON/06/UBERON_0000006.md index 2c0f05b939..422567c246 100644 --- a/md/UBERON/06/UBERON_0000006.md +++ b/md/UBERON/06/UBERON_0000006.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000006 * *Label* = islet of Langerhans - * *Definition* = Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Islets_of_Langerhans] + * *Definition* = Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Islets_of_Langerhans ] * *Comment* = A primitive exocrine pancreas can be found in holocephalan cartilaginous fish; a pancreatic duct directly ending in the gut lumen is connected to a glandular structure made of exocrine cells and associated with cell islets, which comprises three different hormone-producing cell types: insulin, somatostatin and glucagon (Yui and Fujita, 1986)[PMID:16417468] ## Synonyms * pancreatic insula * pancreatic islet - * island of Langerhans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000991] - * island of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000991] + * island of Langerhans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000991 ] + * island of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000991 ] * islets of langerhans ## Cross-references @@ -30,7 +30,7 @@ * MAT:0000076 * MESH:A03.734.414 * MIAA:0000076 - * UMLS:C0022131 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Islet_of_Langerhans] + * UMLS:C0022131 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Islet_of_Langerhans ] * VHOG:0000646 * Wikipedia:Islets_of_Langerhans * XAO:0000159 @@ -63,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Mammals, birds, reptiles and amphibians have a pancreas with similar histology and mode of development, while in some fish, the islet cells are segregated as Brockmann bodies.[well established][VHOG] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76489 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0000106.md b/md/UBERON/06/UBERON_0000106.md index f5adc79838..54750a23a2 100644 --- a/md/UBERON/06/UBERON_0000106.md +++ b/md/UBERON/06/UBERON_0000106.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000106 * *Label* = zygote stage - * *Definition* = A stage at which the organism is a single cell produced by means of sexual reproduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygote] + * *Definition* = A stage at which the organism is a single cell produced by means of sexual reproduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygote ] ## Synonyms * 1-cell stage - * fertilized egg stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000854] + * fertilized egg stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000854 ] * one cell stage * fertilized egg stage - * one-cell stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000745] - * zygote [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000745] - * zygotum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygote[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * one-cell stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000745 ] + * zygote [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000745 ] + * zygotum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygote, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As in all metazoans, eumetazoan development begins with a fertilized egg, or zygote.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0000206.md b/md/UBERON/06/UBERON_0000206.md index 248f03bcca..2d97d522ba 100644 --- a/md/UBERON/06/UBERON_0000206.md +++ b/md/UBERON/06/UBERON_0000206.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000206 * *Label* = pharyngeal gill - * *Definition* = Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gill#Vertebrate_gills] + * *Definition* = Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gill#Vertebrate_gills ] ## Synonyms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T01:18:17Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001006.md b/md/UBERON/06/UBERON_0001006.md index febf5924d9..4ff4eb0184 100644 --- a/md/UBERON/06/UBERON_0001006.md +++ b/md/UBERON/06/UBERON_0001006.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001006 * *Label* = obsolete spiracle - * *Definition* = OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiracle] + * *Definition* = OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiracle ] * *Comment* = This class was obsoleted as it grouped together disparate classes. For the fish structure, see UBERON:0010019. The arthropod structure will presumably be added to the arthropod anatomy ## Synonyms - * open tracheal system spiracle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035277] - * spiracle of open tracheal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035277] + * open tracheal system spiracle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035277 ] + * spiracle of open tracheal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035277 ] * spiracular gland ## Cross-references @@ -38,9 +38,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000950 * *[consider](../../er/oboInOwl#consider.md)* = TGMA:0000578 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0010019 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001006 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_0001106.md b/md/UBERON/06/UBERON_0001106.md index ae7a63fd06..5657567b68 100644 --- a/md/UBERON/06/UBERON_0001106.md +++ b/md/UBERON/06/UBERON_0001106.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001106 * *Label* = cephalic vein - * *Definition* = In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cephalic_vein] + * *Definition* = In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cephalic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * cephalic vein of forearm - * vena cephalica antebrachii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13324[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena cephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cephalic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena cephalica antebrachii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13324, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena cephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cephalic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002092 * OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA * SCTID:181391005 - * UMLS:C0226802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cephalic_Vein] + * UMLS:C0226802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cephalic_Vein ] * Wikipedia:Cephalic_vein * galen:CephalicVein * http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001206.md b/md/UBERON/06/UBERON_0001206.md index 0932a7b981..a3eaabfd40 100644 --- a/md/UBERON/06/UBERON_0001206.md +++ b/md/UBERON/06/UBERON_0001206.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001206 * *Label* = serosa of small intestine - * *Definition* = A serous membrane that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Histology notes: duodenum, 1st part serosa, 2nd - 4th adventitia ## Synonyms - * serosa of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * serosa of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serous coat of small intestine - * serous membrane of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * serous membrane of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal serosa * small intestine serosa - * small intestine serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica serosa (intestinum tenue) - * tunica serosa intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14938[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica serosa intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14938, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * visceral peritoneum of small intestine ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001306.md b/md/UBERON/06/UBERON_0001306.md index 6da4051411..b4c575a852 100644 --- a/md/UBERON/06/UBERON_0001306.md +++ b/md/UBERON/06/UBERON_0001306.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001306 * *Label* = cumulus oophorus - * *Definition* = At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cumulus_oophorus] + * *Definition* = At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cumulus_oophorus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001406.md b/md/UBERON/06/UBERON_0001406.md index 23601acd6b..9480be4a06 100644 --- a/md/UBERON/06/UBERON_0001406.md +++ b/md/UBERON/06/UBERON_0001406.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001406 * *Label* = ulnar artery - * *Definition* = The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_artery] + * *Definition* = The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * A. Ulnaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * A. Ulnaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.114.920 * OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA * SCTID:181333006 - * UMLS:C0162858 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ulnar_Artery] + * UMLS:C0162858 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ulnar_Artery ] * Wikipedia:Ulnar_artery * galen:UlnarArtery * http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001506.md b/md/UBERON/06/UBERON_0001506.md index 29e7d68542..d0379a3c6d 100644 --- a/md/UBERON/06/UBERON_0001506.md +++ b/md/UBERON/06/UBERON_0001506.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001506 * *Label* = brachialis muscle - * *Definition* = The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachialis_muscle] + * *Definition* = The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachialis_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Casserio's muscle - * brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachialis_muscle] - * brachialis anticus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachialis_muscle] - * musculus brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachialis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachialis_muscle ] + * brachialis anticus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachialis_muscle ] + * musculus brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachialis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:37667 * MA:0002271 * SCTID:244982000 - * UMLS:C0224240 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brachialis] + * UMLS:C0224240 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brachialis ] * VHOG:0001026 * Wikipedia:Brachialis_muscle * http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A muscle of the stylopodium, covering the distal half of the humerus and the anterior part of the elbow joint. It functions to flex the zeugopodium. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001606.md b/md/UBERON/06/UBERON_0001606.md index 64ca6c127c..1d5db39aba 100644 --- a/md/UBERON/06/UBERON_0001606.md +++ b/md/UBERON/06/UBERON_0001606.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001606 * *Label* = muscle of iris - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_muscle] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_muscle ] * *Comment* = Taxon notes: The muscle cells of the iris are smooth muscle in mammals and amphibians, but are striated muscle in birds and reptiles. Many fish have neither, and, as a result, their irides are unable to dilate and contract, so that the pupil always remains of a fixed size[Romer, via WP]. In aves, stromal mesenchymal cells may migrate to the iris and become skeletal. Editor notes: revisit this, see issue #331 ## Synonyms * iris muscle - * iris muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * iris muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001706.md b/md/UBERON/06/UBERON_0001706.md index 3812652347..b45e54e9f3 100644 --- a/md/UBERON/06/UBERON_0001706.md +++ b/md/UBERON/06/UBERON_0001706.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001706 * *Label* = nasal septum - * *Definition* = The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] + * *Definition* = The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] * *Comment* = We follow AAO in making this part of the nasal skeleton ## Synonyms - * columella nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] - * nasi columella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] - * septal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] - * septum mobile nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] - * septum nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septum nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] - * septum of the nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_septum] + * columella nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] + * nasi columella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] + * septal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] + * septum mobile nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] + * septum nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] + * septum nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septum of the nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_septum ] ## Cross-references @@ -30,7 +30,7 @@ * MESH:A02.165.639 * OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA * SCTID:181197004 - * UMLS:C0027432 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Septum] + * UMLS:C0027432 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Septum ] * VHOG:0000017 * Wikipedia:Nasal_septum * http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png @@ -64,8 +64,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Medial, vertical plate that separates the nasal capsules.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Whatever the common ancestor of the lamprey and gnathostomes may have looked like, it most likely possessed a neural-crest-derived premandibular ectomesenchyme closely associated with the NHP. Invention of the jaw subsequently required a space for the nasal septum and maxillary process to develop, which might have been provided by subdivision of the NHP into the nasal placode and the hypophysis (diplorhiny, the state of bilaterally separated nasal openings, would also have been a prerequisite for this).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001806.md b/md/UBERON/06/UBERON_0001806.md index 6877c436c7..b23fd8421c 100644 --- a/md/UBERON/06/UBERON_0001806.md +++ b/md/UBERON/06/UBERON_0001806.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001806 * *Label* = sympathetic ganglion - * *Definition* = Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They are located close to and on either side of the spinal cord in long chains. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_ganglion] + * *Definition* = Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They are located close to and on either side of the spinal cord in long chains. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_ganglion ] ## Synonyms - * ganglion of sympathetic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of sympathetic part of autonomic division of nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ganglion of sympathetic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of sympathetic part of autonomic division of nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ganglion sympatheticum - * sympathetic nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sympathetic part of autonomic division of nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion sympathicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001333] - * ganglion sympathicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sympathetic nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sympathetic part of autonomic division of nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion sympathicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001333 ] + * ganglion sympathicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:5890 * MA:0000226 * SCTID:362485003 - * UMLS:C0017071 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sympathetic_Ganglion] + * UMLS:C0017071 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sympathetic_Ganglion ] * Wikipedia:Sympathetic_ganglion * http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sympathetic nervous system](../../UBERON/13/UBERON_0000013.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0001906.md b/md/UBERON/06/UBERON_0001906.md index 538de783e7..637b1cffa6 100644 --- a/md/UBERON/06/UBERON_0001906.md +++ b/md/UBERON/06/UBERON_0001906.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001906 * *Label* = subthalamic nucleus - * *Definition* = The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021763] + * *Definition* = The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021763 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,15 +11,15 @@ * Luys' nucleus * body of Forel * body of Luys - * nucleus of Luys [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus] + * nucleus of Luys [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus ] * nucleus of corpus luysii - * nucleus subthalamicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002252[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus subthalamicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002252, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * subthalamic nucleus (of Luys) - * Luy's body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus] - * Luys' body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002252] - * corpus Luysi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus] - * corpus subthalamicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subthalamic nucleus of Luys [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subthalamic_nucleus] + * Luy's body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus ] + * Luys' body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002252 ] + * corpus Luysi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus ] + * corpus subthalamicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subthalamic nucleus of Luys [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subthalamic_nucleus ] ## Cross-references @@ -39,7 +39,7 @@ * NIF_GrossAnatomy:nlx_anat_1010002 * NeuroNames:435 * SCTID:361575000 - * UMLS:C0152355 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subthalamic_Nucleus] + * UMLS:C0152355 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subthalamic_Nucleus ] * Wikipedia:Subthalamic_nucleus * http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Basal-ganglia-coronal-sections-large.png/200px-Basal-ganglia-coronal-sections-large.png @@ -65,8 +65,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lens shaped nucleus lying in the subthalamu[NIF_GrossAnatomy:nlx_anat_1010002]s - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002006.md b/md/UBERON/06/UBERON_0002006.md index 8fa7bb77f6..891aa1a0d5 100644 --- a/md/UBERON/06/UBERON_0002006.md +++ b/md/UBERON/06/UBERON_0002006.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002006 * *Label* = cortex of lymph node - * *Definition* = Peripheral portion of the lymph node, underneath the capsule[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortex_of_lymph_node] + * *Definition* = Peripheral portion of the lymph node, underneath the capsule[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortex_of_lymph_node ] ## Synonyms * lymph node cortex - * cortex nodi lymphoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortex_of_lymph_node[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cortex nodi lymphoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortex_of_lymph_node, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:66253 * MA:0000740 - * UMLS:C0933402 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node_Cortex] + * UMLS:C0933402 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node_Cortex ] * Wikipedia:Cortex_of_lymph_node * http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png * ncithesaurus:Lymph_Node_Cortex @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002106.md b/md/UBERON/06/UBERON_0002106.md index 83dc8dce05..e468469313 100644 --- a/md/UBERON/06/UBERON_0002106.md +++ b/md/UBERON/06/UBERON_0002106.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002106 * *Label* = spleen - * *Definition* = Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system. In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron. It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spleen] + * *Definition* = Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system. In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron. It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spleen ] * *Comment* = Taxon notes: Neither hagfish nor lampreys possess what might be considered a discrete and condensed spleen. Hagfish possess dispersed lymphoid tissue within the submucosa of the intestine (96) associated with the portal vein (97), whereas lymphoid tissue is associated with the typhlosole portion of the intestine in lampreys (96) [PMID:20959416] ## Synonyms - * lien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spleen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spleen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA * SCTID:181279003 * TAO:0000436 - * UMLS:C0037993 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spleen] + * UMLS:C0037993 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spleen ] * VHOG:0000120 * Wikipedia:Spleen * XAO:0000328 @@ -72,8 +72,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = lienal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = splenic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002206.md b/md/UBERON/06/UBERON_0002206.md index bd5af9dbca..2948fc3e42 100644 --- a/md/UBERON/06/UBERON_0002206.md +++ b/md/UBERON/06/UBERON_0002206.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002206 * *Label* = mammillary body - * *Definition* = The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillary_body] + * *Definition* = The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillary_body ] ## Synonyms - * corpus mamillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000334] - * mmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_865[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpora mamillaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpora mammillaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus mamillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillary_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus mamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus mammillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus mamillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000334 ] + * mmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_865, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpora mamillaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpora mammillaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus mamillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillary_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus mamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus mammillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,12 +26,12 @@ * MA:0000174 * MESH:A08.186.211.730.385.357.362.500 * NIF_GrossAnatomy:birnlex_865 - * NeuroNames:412 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_865] + * NeuroNames:412 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_865 ] * SCTID:279306001 * TAO:0000334 - * UMLS:C0024670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_865] - * UMLS:C0024670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mamillary_Body] - * UMLS:C1305759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_865] + * UMLS:C0024670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_865 ] + * UMLS:C0024670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mamillary_Body ] + * UMLS:C1305759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_865 ] * Wikipedia:Mammillary_body * ZFA:0000334 * http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002306.md b/md/UBERON/06/UBERON_0002306.md index c45fef6689..bed6f76b1b 100644 --- a/md/UBERON/06/UBERON_0002306.md +++ b/md/UBERON/06/UBERON_0002306.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002306 * *Label* = nasal mucus - * *Definition* = In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_mucus#Respiratory_system] + * *Definition* = In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_mucus#Respiratory_system ] * *Comment* = TODO - split nasal vs respiratory tract? ## Synonyms - * respiratory mucus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003603] + * respiratory mucus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003603 ] ## Cross-references @@ -16,7 +16,7 @@ * CALOHA:TS-0658 * FMA:83688 * MA:0002535 - * UMLS:C0225392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Mucus] + * UMLS:C0225392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Mucus ] * Wikipedia:Nasal_mucus#Respiratory_system * ncithesaurus:Nasal_Mucus @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucus](../../UBERON/12/UBERON_0000912.md) and [produced_by](../../RO/01/RO_0003001.md) some [respiratory system mucosa](../../UBERON/85/UBERON_0004785.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002406.md b/md/UBERON/06/UBERON_0002406.md index 0cfb48380d..7d94e28cd4 100644 --- a/md/UBERON/06/UBERON_0002406.md +++ b/md/UBERON/06/UBERON_0002406.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002406 * *Label* = pericardial sac - * *Definition* = Serous sac, which has as parts the serous pericardium and the pericardial cavity [FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9868] + * *Definition* = Serous sac, which has as parts the serous pericardium and the pericardial cavity [FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9868 ] * *Comment* = We follow FMA in dividing pericardial sac in pericardium and pericardial cavity ## Synonyms @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [pericardial cavity](../../UBERON/74/UBERON_0001074.md) and [has_part](../../BFO/51/BFO_0000051.md) some [serous pericardium](../../UBERON/57/UBERON_0002357.md) and [serous sac](../../UBERON/06/UBERON_0005906.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002506.md b/md/UBERON/06/UBERON_0002506.md index 6ad7d6105b..f09aab778a 100644 --- a/md/UBERON/06/UBERON_0002506.md +++ b/md/UBERON/06/UBERON_0002506.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002506 * *Label* = iris epithelium - * *Definition* = An epithelium that is part of a iris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a iris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium pigmentosum (iris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58517] - * epithelium pigmentosum iridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58517[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * iris epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * iris epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58517] - * pigmented epithelium of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58517] - * iris pigmented epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002826] + * epithelial tissue of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium pigmentosum (iris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58517 ] + * epithelium pigmentosum iridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58517, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * iris epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * iris epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58517 ] + * pigmented epithelium of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58517 ] + * iris pigmented epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002826 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002606.md b/md/UBERON/06/UBERON_0002606.md index 5bd89ca39b..0bc0423c26 100644 --- a/md/UBERON/06/UBERON_0002606.md +++ b/md/UBERON/06/UBERON_0002606.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002606 * *Label* = neuropil - * *Definition* = A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system[MESH] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.637.500[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuropil] + * *Definition* = A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system[MESH] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.637.500, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuropil ] ## Synonyms - * neuropilus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuropil[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * neuropilus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuropil, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * NIF_GrossAnatomy:birnlex_1142 * NIF_Subcellular:sao205380252 * SCTID:67146008 - * UMLS:C0228081 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neuropil] + * UMLS:C0228081 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neuropil ] * Wikipedia:Neuropil * ncithesaurus:Neuropil @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002706.md b/md/UBERON/06/UBERON_0002706.md index 0395002957..271d7d539a 100644 --- a/md/UBERON/06/UBERON_0002706.md +++ b/md/UBERON/06/UBERON_0002706.md @@ -6,16 +6,16 @@ ## Synonyms - * area hypothalamica posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62350[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62350] - * posterior hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62350] - * PH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1463[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area posterior hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:420[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus hypothalamicus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:420[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus posterior hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002461] - * parahippocampal transition area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PHA] - * posterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:420] - * posterior nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:420] + * area hypothalamica posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62350, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62350 ] + * posterior hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62350 ] + * PH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1463, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area posterior hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:420, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus hypothalamicus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:420, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus posterior hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002461 ] + * parahippocampal transition area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PHA ] + * posterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:420 ] + * posterior nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:420 ] ## Cross-references @@ -28,9 +28,9 @@ * EV:0100235 * FMA:62350 * NIF_GrossAnatomy:birnlex_1463 - * NeuroNames:420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1463] + * NeuroNames:420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1463 ] * SCTID:362385002 - * UMLS:C0228385 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1463] + * UMLS:C0228385 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1463 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002806.md b/md/UBERON/06/UBERON_0002806.md index f008a86a08..e2f76bdea5 100644 --- a/md/UBERON/06/UBERON_0002806.md +++ b/md/UBERON/06/UBERON_0002806.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002806 * *Label* = left occipital lobe - * *Definition* = An occipital lobe that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An occipital lobe that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:72976 * NIF_GrossAnatomy:birnlex_1782 * SCTID:314150007 - * UMLS:C1281963 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1782] + * UMLS:C1281963 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1782 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occipital lobe](../../UBERON/21/UBERON_0002021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0002906.md b/md/UBERON/06/UBERON_0002906.md index be3b2c7fcd..d86c467d3e 100644 --- a/md/UBERON/06/UBERON_0002906.md +++ b/md/UBERON/06/UBERON_0002906.md @@ -6,20 +6,20 @@ ## Synonyms - * ascending limb of the inferior temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4023] - * posterior inferior temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4023] - * sulci occipitales superiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4023] - * sulcus annectans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4023] - * sulcus occipitalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4023] - * aocs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4023[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * ascending limb of the inferior temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4023 ] + * posterior inferior temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4023 ] + * sulci occipitales superiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4023 ] + * sulcus annectans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4023 ] + * sulcus occipitalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4023 ] + * aocs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4023, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:aocs * FMA:75758 * NIF_GrossAnatomy:birnlex_4023 - * NeuroNames:142 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4023] - * UMLS:C0262194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4023] + * NeuroNames:142 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4023 ] + * UMLS:C0262194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4023 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003006.md b/md/UBERON/06/UBERON_0003006.md index 3fc48dd1b0..12b3ff3ec4 100644 --- a/md/UBERON/06/UBERON_0003006.md +++ b/md/UBERON/06/UBERON_0003006.md @@ -6,13 +6,13 @@ ## Synonyms - * dorsal nucleus of the lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72483] - * nucleus of the lateral lemniscus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:NLLd] - * nucleus posterior lemnisci lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72483[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior nucleus of lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72483] - * nucleus lemnisci lateralis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:591[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus lemnisci lateralis pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:591[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the lateral lemniscus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NLLd] + * dorsal nucleus of the lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72483 ] + * nucleus of the lateral lemniscus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:NLLd ] + * nucleus posterior lemnisci lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72483, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior nucleus of lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72483 ] + * nucleus lemnisci lateralis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:591, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus lemnisci lateralis pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:591, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the lateral lemniscus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NLLd ] ## Cross-references @@ -22,8 +22,8 @@ * BM:LLD * FMA:72483 * NIF_GrossAnatomy:birnlex_894 - * NeuroNames:591 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_894] - * UMLS:C0175443 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_894] + * NeuroNames:591 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_894 ] + * UMLS:C0175443 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_894 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003106.md b/md/UBERON/06/UBERON_0003106.md index c2b4411f3e..73bdf73900 100644 --- a/md/UBERON/06/UBERON_0003106.md +++ b/md/UBERON/06/UBERON_0003106.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003106 * *Label* = urostyle - * *Definition* = In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000732[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000158] + * *Definition* = In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000732, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000158 ] * *Comment* = In zebrafish, it is composed of preural vertebra 1 and ural centra 1 and 2. The number of ural centra that become fused with preural centrum 1 varies among teleost subgroups. Because of varying developmental origins the urostyle may not be homologous across species.[TAO]. Grouping with AAO dubious ## Synonyms - * compound caudal centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000158] + * compound caudal centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000158 ] * compound centrum - * compound terminal centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000158] - * compound terminal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000158] + * compound terminal centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000158 ] + * compound terminal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000158 ] * last vertebra - * terminal centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000158] + * terminal centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000158 ] * ultimate vertebra ## Cross-references @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of caudal fin skeleton (VSAO:0000167)[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In zebrafish, it is composed of preural vertebra 1 and ural centra 1 and 2. The number of ural centra that become fused with preural centrum 1 varies among teleost subgroups. Because of varying developmental origins the urostyle may not be homologous across species.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003206.md b/md/UBERON/06/UBERON_0003206.md index 92fccea705..df87ba557f 100644 --- a/md/UBERON/06/UBERON_0003206.md +++ b/md/UBERON/06/UBERON_0003206.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00005813 * *[consider](../../er/oboInOwl#consider.md)* = FMA:75428 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000143 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003206 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_0003306.md b/md/UBERON/06/UBERON_0003306.md index 44d0f2cea5..312ee51574 100644 --- a/md/UBERON/06/UBERON_0003306.md +++ b/md/UBERON/06/UBERON_0003306.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003306 * *Label* = floor plate of neural tube - * *Definition* = A floor plate that is part of a neural tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a neural tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that although 'floor plate' is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. We introduce this class for the neural tube specific structure ## Synonyms - * floor plate neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001434] - * floorplate of neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neural tube floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neural tube floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000300] + * floor plate neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001434 ] + * floorplate of neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neural tube floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neural tube floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000300 ] ## Cross-references @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003406.md b/md/UBERON/06/UBERON_0003406.md index 5af7d12a62..e247ea0b18 100644 --- a/md/UBERON/06/UBERON_0003406.md +++ b/md/UBERON/06/UBERON_0003406.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003406 * *Label* = cartilage of respiratory system - * *Definition* = A cartilage element that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage element that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003506.md b/md/UBERON/06/UBERON_0003506.md index 6970e07353..df2a181509 100644 --- a/md/UBERON/06/UBERON_0003506.md +++ b/md/UBERON/06/UBERON_0003506.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003506 * *Label* = chest blood vessel - * *Definition* = A blood vessel that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior thoracic region blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003606.md b/md/UBERON/06/UBERON_0003606.md index 5f3f4a508a..a574782e72 100644 --- a/md/UBERON/06/UBERON_0003606.md +++ b/md/UBERON/06/UBERON_0003606.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003606 * *Label* = limb long bone - * *Definition* = A long bone that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A long bone that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * long bone of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * long bone of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long bone](../../UBERON/95/UBERON_0002495.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003706.md b/md/UBERON/06/UBERON_0003706.md index 6c095bcb8b..9ac14f655a 100644 --- a/md/UBERON/06/UBERON_0003706.md +++ b/md/UBERON/06/UBERON_0003706.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003706 * *Label* = laryngeal vocal fold - * *Definition* = Either of two pairs of folds of mucous membrane projecting into the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] + * *Definition* = Either of two pairs of folds of mucous membrane projecting into the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/ ] ## Synonyms - * true vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55457] - * vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55457] - * Stimmband [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005084] - * Stimmlippe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005084] - * plica vocalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005084] - * vocal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005084] - * vocal chord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005084] - * vocal fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.329.364.737] + * true vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55457 ] + * vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55457 ] + * Stimmband [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005084 ] + * Stimmlippe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005084 ] + * plica vocalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005084 ] + * vocal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005084 ] + * vocal chord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005084 ] + * vocal fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.329.364.737 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A04.329.364.737 * OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA * SCTID:245504003 - * UMLS:C0042930 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vocal_Cord] + * UMLS:C0042930 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vocal_Cord ] * ncithesaurus:Vocal_Cord ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0003906.md b/md/UBERON/06/UBERON_0003906.md index a8ec81130f..4cd9ce74b2 100644 --- a/md/UBERON/06/UBERON_0003906.md +++ b/md/UBERON/06/UBERON_0003906.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003906 * *Label* = cardiac jelly - * *Definition* = Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001318] + * *Definition* = Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001318 ] ## Synonyms - * heart cardiac jelly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000936] + * heart cardiac jelly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000936 ] ## Cross-references @@ -29,7 +29,7 @@ * EMAPA:32687 * RETIRED_EHDAA2:0000212 * TAO:0001318 - * UMLS:C1516293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Jelly] + * UMLS:C1516293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Jelly ] * VHOG:0000936 * XAO:0004120 * ZFA:0001318 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004006.md b/md/UBERON/06/UBERON_0004006.md index 061a2beda1..9fee95bb8d 100644 --- a/md/UBERON/06/UBERON_0004006.md +++ b/md/UBERON/06/UBERON_0004006.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004006 * *Label* = cerebellum intermediate zone - * *Definition* = the paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009966] + * *Definition* = the paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009966 ] ## Synonyms - * cerebellar paravermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009966] - * cerebellar paravermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081236] - * cerebellum intermediate hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009966] - * intermediate part of spinocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009966] - * intermediate zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081236] - * paravermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009966] - * spinocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_hemisphere] + * cerebellar paravermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009966 ] + * cerebellar paravermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081236 ] + * cerebellum intermediate hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009966 ] + * intermediate part of spinocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009966 ] + * intermediate zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081236 ] + * paravermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009966 ] + * spinocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_hemisphere ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0014342 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004106.md b/md/UBERON/06/UBERON_0004106.md index fd4da19af4..2dcc63b159 100644 --- a/md/UBERON/06/UBERON_0004106.md +++ b/md/UBERON/06/UBERON_0004106.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004106 * *Label* = crus of ear - * *Definition* = horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0009895] + * *Definition* = horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0009895 ] ## Synonyms - * crus helicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61024[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * crus helicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61024, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * crus of helical part of auricular cartilage - * crus of helix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61024] + * crus of helix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61024 ] ## Cross-references * FMA:61024 * SCTID:362547004 - * UMLS:C0229319 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Crus_Helicis] + * UMLS:C0229319 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Crus_Helicis ] * ncithesaurus:Crus_Helicis ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004206.md b/md/UBERON/06/UBERON_0004206.md index 8c73bc179c..7a0cf95438 100644 --- a/md/UBERON/06/UBERON_0004206.md +++ b/md/UBERON/06/UBERON_0004206.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004206 * *Label* = long descending thin limb bend - * *Definition* = The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072065] + * *Definition* = The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072065 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004406.md b/md/UBERON/06/UBERON_0004406.md index edb9969cea..eb4a408a8c 100644 --- a/md/UBERON/06/UBERON_0004406.md +++ b/md/UBERON/06/UBERON_0004406.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004406 * *Label* = distal epiphysis of femur - * *Definition* = A distal epiphysis that is part of a femur [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a femur [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal femoral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * distal head of femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000893] + * distal femoral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * distal head of femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000893 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Head of the femur that articulates with the tibia and fibula.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004506.md b/md/UBERON/06/UBERON_0004506.md index e2a078be47..8a5629a352 100644 --- a/md/UBERON/06/UBERON_0004506.md +++ b/md/UBERON/06/UBERON_0004506.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004506 * *Label* = skeletal muscle tissue of masseter - * *Definition* = A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [masseter muscle](../../UBERON/97/UBERON_0001597.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004606.md b/md/UBERON/06/UBERON_0004606.md index 3ba6f3640a..99c5ff68bb 100644 --- a/md/UBERON/06/UBERON_0004606.md +++ b/md/UBERON/06/UBERON_0004606.md @@ -7,14 +7,15 @@ ## Synonyms - * sixth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8147] + * costa VI [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sixth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8147 ] ## Cross-references * FMA:8147 * MA:0001406 * SCTID:244661009 - * UMLS:C1709952 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_6] + * UMLS:C1709952 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_6 ] * ncithesaurus:Rib_6 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 6 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004706.md b/md/UBERON/06/UBERON_0004706.md index ca18ba376b..2377f41433 100644 --- a/md/UBERON/06/UBERON_0004706.md +++ b/md/UBERON/06/UBERON_0004706.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004706 * *Label* = bulbus cordis - * *Definition* = The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbus_cordis] + * *Definition* = The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbus_cordis ] * *Comment* = todo - check ZFA ## Synonyms - * primitive right ventricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000197[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + JB:def] + * primitive right ventricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000197, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = JB:def ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:70300 * SCTID:361525002 * TAO:0000173 - * UMLS:C1284055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bulbus_Cordis] + * UMLS:C1284055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bulbus_Cordis ] * Wikipedia:Bulbus_cordis * ZFA:0000173 * http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004806.md b/md/UBERON/06/UBERON_0004806.md index da68120aa2..70b337832f 100644 --- a/md/UBERON/06/UBERON_0004806.md +++ b/md/UBERON/06/UBERON_0004806.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004806 * *Label* = vas deferens epithelium - * *Definition* = An epithelium that is part of a vas deferens [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a vas deferens [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * deferent duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deferent duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus deferens epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus deferens epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferen epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferen epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferens epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * deferent duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deferent duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus deferens epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus deferens epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferen epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferen epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferens epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:29274 * FMA:225317 * MA:0001749 - * UMLS:C1710617 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vas_Deferens_Epithelium] + * UMLS:C1710617 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vas_Deferens_Epithelium ] * ncithesaurus:Vas_Deferens_Epithelium ## Subsets @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0004906.md b/md/UBERON/06/UBERON_0004906.md index 291f15c21e..ce0e579efe 100644 --- a/md/UBERON/06/UBERON_0004906.md +++ b/md/UBERON/06/UBERON_0004906.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004906 * *Label* = ectodermal part of digestive tract - * *Definition* = A portion of the gut that is derived from ectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007439] + * *Definition* = A portion of the gut that is derived from ectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007439 ] ## Synonyms * ectodermal gut - * gut ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:32930] + * gut ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:32930 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) and [subdivision of digestive tract](../../UBERON/21/UBERON_0004921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005006.md b/md/UBERON/06/UBERON_0005006.md index d05f14d96b..b133138883 100644 --- a/md/UBERON/06/UBERON_0005006.md +++ b/md/UBERON/06/UBERON_0005006.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005006 * *Label* = mucosa of renal pelvis - * *Definition* = A mucosa that is part of a renal pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a renal pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney pelvis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvic mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17931] - * renal pelvis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa pelvis renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17931[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * kidney pelvis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvic mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17931 ] + * renal pelvis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa pelvis renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17931, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal pelvis](../../UBERON/24/UBERON_0001224.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005106.md b/md/UBERON/06/UBERON_0005106.md index af73247c34..7aad30108a 100644 --- a/md/UBERON/06/UBERON_0005106.md +++ b/md/UBERON/06/UBERON_0005106.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005106 * *Label* = metanephric tubule - * *Definition* = A metanephric tubule is an epithelial tube that is part of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072173] + * *Definition* = A metanephric tubule is an epithelial tube that is part of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072173 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial tube](../../UBERON/14/UBERON_0003914.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005206.md b/md/UBERON/06/UBERON_0005206.md index ee97740852..51c623ef91 100644 --- a/md/UBERON/06/UBERON_0005206.md +++ b/md/UBERON/06/UBERON_0005206.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005206 * *Label* = choroid plexus stroma - * *Definition* = A stroma that is part of a choroid plexus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stroma that is part of a choroid plexus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [choroid plexus](../../UBERON/86/UBERON_0001886.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005306.md b/md/UBERON/06/UBERON_0005306.md index b381edbad0..cf8b413267 100644 --- a/md/UBERON/06/UBERON_0005306.md +++ b/md/UBERON/06/UBERON_0005306.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005306 * *Label* = blastema - * *Definition* = A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastema[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001270[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-061108-12] + * *Definition* = A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastema, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001270, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-061108-12 ] * *Comment* = Note the ZFA class called 'blastema' belongs with the subclass, blastema of regenerating fin/limb ## Synonyms - * blastemata [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * regeneration blastema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-061108-12] + * blastemata [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * regeneration blastema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-061108-12 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005406.md b/md/UBERON/06/UBERON_0005406.md index 0888bcee2d..6bd9d78ad7 100644 --- a/md/UBERON/06/UBERON_0005406.md +++ b/md/UBERON/06/UBERON_0005406.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005406 * *Label* = perirenal fat - * *Definition* = The adipose capsule of kidney (or perinephric fat or perirenal fat) is a structure between the renal fascia and renal capsule, and may be regarded as a part of the latter. A different structure, the pararenal fat, is the adipose tissue superficial to the renal fascia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adipose_capsule_of_kidney] + * *Definition* = The adipose capsule of kidney (or perinephric fat or perirenal fat) is a structure between the renal fascia and renal capsule, and may be regarded as a part of the latter. A different structure, the pararenal fat, is the adipose tissue superficial to the renal fascia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adipose_capsule_of_kidney ] * *Comment* = TODO - split perinephric / perirenal ## Synonyms - * perirenal fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20502] - * adipose capsule of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975] - * capsula adiposa renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adipose_capsule_of_kidney[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fatty capsule of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975] - * perinephric fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975] - * periphrenic fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975] - * perirenal fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975] - * perirenal fat capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002975[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW] - * perirenal fat pad [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW] + * perirenal fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20502 ] + * adipose capsule of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975 ] + * capsula adiposa renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adipose_capsule_of_kidney, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fatty capsule of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975 ] + * perinephric fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975 ] + * periphrenic fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975 ] + * perirenal fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975 ] + * perirenal fat capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002975, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW ] + * perirenal fat pad [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005606.md b/md/UBERON/06/UBERON_0005606.md index 7f76700d79..f2892df0f6 100644 --- a/md/UBERON/06/UBERON_0005606.md +++ b/md/UBERON/06/UBERON_0005606.md @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A depression in the front of the vitreous body, lodging the lens. [adapted_from_the_definition_of_the_hyaloid_fossa] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005706.md b/md/UBERON/06/UBERON_0005706.md index f6d7bb6562..6ef8fda69e 100644 --- a/md/UBERON/06/UBERON_0005706.md +++ b/md/UBERON/06/UBERON_0005706.md @@ -27,9 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001714 * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0000226 * *[consider](../../er/oboInOwl#consider.md)* = EHDAA:920 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005706 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_0005806.md b/md/UBERON/06/UBERON_0005806.md index e838b7da8d..fb00b39974 100644 --- a/md/UBERON/06/UBERON_0005806.md +++ b/md/UBERON/06/UBERON_0005806.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005806 * *Label* = portal system - * *Definition* = In the circulatory system of animals, a portal venous system occurs when a capillary bed drains into another capillary bed through veins, without first going through the heart. Both capillary beds and the blood vessels that connect them are considered part of the portal venous system. They are relatively uncommon as the majority of capillary beds drain into veins which then drain into the heart, not into another capillary bed. Portal venous systems are considered venous because the blood vessels that join the two capillary beds are either veins or venules. Examples of such systems include the hepatic portal system and the hypophyseal portal system. Unqualified, 'portal venous system' often refers to the hepatic portal system. For this reason, 'portal vein' most commonly refers to the hepatic portal vein[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Portal_venous_system] + * *Definition* = In the circulatory system of animals, a portal venous system occurs when a capillary bed drains into another capillary bed through veins, without first going through the heart. Both capillary beds and the blood vessels that connect them are considered part of the portal venous system. They are relatively uncommon as the majority of capillary beds drain into veins which then drain into the heart, not into another capillary bed. Portal venous systems are considered venous because the blood vessels that join the two capillary beds are either veins or venules. Examples of such systems include the hepatic portal system and the hypophyseal portal system. Unqualified, 'portal venous system' often refers to the hepatic portal system. For this reason, 'portal vein' most commonly refers to the hepatic portal vein[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Portal_venous_system ] ## Synonyms - * portal venous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45628] + * portal venous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45628 ] ## Cross-references * FMA:45628 * MESH:A07.231.908.670 * SCTID:362063001 - * UMLS:C0226727 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Portal_Venous_System] + * UMLS:C0226727 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Portal_Venous_System ] * Wikipedia:Portal_venous_system * ncithesaurus:Portal_Venous_System @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0005906.md b/md/UBERON/06/UBERON_0005906.md index fccfc77484..0737d3e3e3 100644 --- a/md/UBERON/06/UBERON_0005906.md +++ b/md/UBERON/06/UBERON_0005906.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005906 * *Label* = serous sac - * *Definition* = Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9689] + * *Definition* = Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9689 ] * *Comment* = See notes for serous membrane ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006006.md b/md/UBERON/06/UBERON_0006006.md index 88e66c719e..3a8fb2d5f2 100644 --- a/md/UBERON/06/UBERON_0006006.md +++ b/md/UBERON/06/UBERON_0006006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006006 * *Label* = metoptic pilar - * *Definition* = posterior border of the optic nerve foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010705] + * *Definition* = posterior border of the optic nerve foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010705 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006106.md b/md/UBERON/06/UBERON_0006106.md index 7e01e9d25e..8389a7b68f 100644 --- a/md/UBERON/06/UBERON_0006106.md +++ b/md/UBERON/06/UBERON_0006106.md @@ -6,17 +6,17 @@ ## Synonyms - * cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2553] - * spiral canal of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2553] - * wall of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75371] + * cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2553 ] + * spiral canal of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2553 ] + * wall of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75371 ] ## Cross-references * FMA:75371 * NIF_GrossAnatomy:birnlex_2553 * SCTID:279779009 - * UMLS:C0009198 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2553] - * UMLS:C0458767 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2553] + * UMLS:C0009198 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2553 ] + * UMLS:C0458767 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2553 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006206.md b/md/UBERON/06/UBERON_0006206.md index 7b05929790..7eac958f7f 100644 --- a/md/UBERON/06/UBERON_0006206.md +++ b/md/UBERON/06/UBERON_0006206.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006206 * *Label* = iridocorneal angle - * *Definition* = acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004221] + * *Definition* = acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004221 ] ## Synonyms - * anterior chamber angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58577] + * anterior chamber angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58577 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006306.md b/md/UBERON/06/UBERON_0006306.md index dece28c5ef..12aa5fab5e 100644 --- a/md/UBERON/06/UBERON_0006306.md +++ b/md/UBERON/06/UBERON_0006306.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006306 * *Label* = ulna cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [ulna endochondral element](../../UBERON/03/UBERON_0015003.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006606.md b/md/UBERON/06/UBERON_0006606.md index f456d8ec1c..0d7e4fe9d4 100644 --- a/md/UBERON/06/UBERON_0006606.md +++ b/md/UBERON/06/UBERON_0006606.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006606 * *Label* = mandibular symphysis - * *Definition* = A cartilaginous joint that connects left and right mandibles/dentary bones. Mandibular symphysis is unpaired[TAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Symphysis_menti[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005488] + * *Definition* = A cartilaginous joint that connects left and right mandibles/dentary bones. Mandibular symphysis is unpaired[TAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Symphysis_menti, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005488 ] * *Comment* = Taxon notes: in snakes, the mandibular symphysis is composed of soft tissues, allowing independent movement of each mandible[Kardong] Editor notes: this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints ## Synonyms - * dentary symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001851] - * inter-dentary joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001851] - * inter-mandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001851] - * symphysis menti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001490] - * mental symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Symphysis_menti] - * symphysis mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Symphysis_menti[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dentary symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001851 ] + * inter-dentary joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001851 ] + * inter-mandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001851 ] + * symphysis menti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001490 ] + * mental symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Symphysis_menti ] + * symphysis mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Symphysis_menti, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [cartilaginous joint](../../UBERON/13/UBERON_0002213.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006806.md b/md/UBERON/06/UBERON_0006806.md index cf303129dd..1d7381099d 100644 --- a/md/UBERON/06/UBERON_0006806.md +++ b/md/UBERON/06/UBERON_0006806.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006806 * *Label* = entepicondyle of humerus - * *Definition* = A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryE.html] + * *Definition* = A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryE.html ] ## Synonyms - * entepicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm] - * medial epicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000782] - * e. medialis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * elbow pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_humerus] - * epicondylus medialis (humerus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23441] - * epicondylus medialis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000782] - * medial epicondyle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23441[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * ulnar condyle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.termiumplus.gc.ca] - * ventral epicondyle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * entepicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm ] + * medial epicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000782 ] + * e. medialis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * elbow pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_humerus ] + * epicondylus medialis (humerus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23441 ] + * epicondylus medialis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000782 ] + * medial epicondyle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23441, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * ulnar condyle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.termiumplus.gc.ca ] + * ventral epicondyle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = entepicondylar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0006906.md b/md/UBERON/06/UBERON_0006906.md index 9cb2365564..06cd436d77 100644 --- a/md/UBERON/06/UBERON_0006906.md +++ b/md/UBERON/06/UBERON_0006906.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006906 * *Label* = ala of nose - * *Definition* = The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] + * *Definition* = The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full ] ## Synonyms - * nasal ala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59519] - * ala nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ala nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose] - * ala of the nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose] - * wing of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose] - * wing of the nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose] - * wings of the nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ala_of_nose] + * nasal ala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59519 ] + * ala nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose ] + * ala nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ala of the nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose ] + * wing of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose ] + * wing of the nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose ] + * wings of the nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ala_of_nose ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0007006.md b/md/UBERON/06/UBERON_0007006.md index 535c3baa3f..1369dc214f 100644 --- a/md/UBERON/06/UBERON_0007006.md +++ b/md/UBERON/06/UBERON_0007006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007006 * *Label* = obsolete blastomere - * *Definition* = a type of cell produced by division of the egg after fertilization. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastomere] + * *Definition* = a type of cell produced by division of the egg after fertilization. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastomere ] ## Synonyms @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0001221 * *[consider](../../er/oboInOwl#consider.md)* = XAO:0003016 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000093 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007006 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_0007106.md b/md/UBERON/06/UBERON_0007106.md index 5cdd15e4dc..d79157b18d 100644 --- a/md/UBERON/06/UBERON_0007106.md +++ b/md/UBERON/06/UBERON_0007106.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007106 * *Label* = chorionic villus - * *Definition* = One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001161[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorionic_villi] + * *Definition* = One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001161, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorionic_villi ] * *Comment* = Taxon notes: The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively. Histology notes: The bulk of the villi consist of connective tissues in which blood vessels are found. Most of the cells in the connective tissue core of the villi are fibroblasts. Macrophages known as Hofbauer cells are also present. ## Synonyms - * chorionic villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A16.254.403.473.200[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * chorionic villous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorionic_villi] - * chorionic villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1300] - * placental villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1300[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * chorionic villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A16.254.403.473.200, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * chorionic villous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorionic_villi ] + * chorionic villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1300 ] + * placental villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1300, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * placental villous - * placental villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1300] + * placental villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1300 ] * villous of placenta ## Cross-references @@ -22,7 +22,7 @@ * EHDAA2:0004717 * MESH:A16.254.403.473.200 * SCTID:360403003 - * UMLS:C0008508 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chorionic_Villus] + * UMLS:C0008508 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chorionic_Villus ] * Wikipedia:Chorionic_villi * http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png * ncithesaurus:Chorionic_Villus @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0007306.md b/md/UBERON/06/UBERON_0007306.md index b5a86fa019..c2f0f68222 100644 --- a/md/UBERON/06/UBERON_0007306.md +++ b/md/UBERON/06/UBERON_0007306.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007306 * *Label* = pronephric glomerular capillary - * *Definition* = A glomerular capillary that is part of a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A glomerular capillary that is part of a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular capillary](../../UBERON/12/UBERON_0004212.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0007606.md b/md/UBERON/06/UBERON_0007606.md index ff5583331a..170f803d65 100644 --- a/md/UBERON/06/UBERON_0007606.md +++ b/md/UBERON/06/UBERON_0007606.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [ciliated epithelial cell](../../CL/67/CL_0000067.md) and [stratified columnar epithelium](../../UBERON/02/UBERON_0007602.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0007806.md b/md/UBERON/06/UBERON_0007806.md index c3a6c8771c..4f80db71d8 100644 --- a/md/UBERON/06/UBERON_0007806.md +++ b/md/UBERON/06/UBERON_0007806.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007806 * *Label* = connecting stalk - * *Definition* = A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] + * *Definition* = A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/ ] * *Comment* = todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * BTO:0004705 - * UMLS:C1516792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Connecting_Stalk] + * UMLS:C1516792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Connecting_Stalk ] * ncithesaurus:Connecting_Stalk ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0008606.md b/md/UBERON/06/UBERON_0008606.md index 6ddfa2ffa5..029ffd1cf3 100644 --- a/md/UBERON/06/UBERON_0008606.md +++ b/md/UBERON/06/UBERON_0008606.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008606 * *Label* = antitragicus muscle - * *Definition* = The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antitragicus] + * *Definition* = The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antitragicus ] ## Synonyms - * antitragicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48980] + * antitragicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48980 ] * antitragicus muscle - * musculus antitragicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antitragicus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus antitragicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antitragicus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0008806.md b/md/UBERON/06/UBERON_0008806.md index b48a08ff92..fef4d9799a 100644 --- a/md/UBERON/06/UBERON_0008806.md +++ b/md/UBERON/06/UBERON_0008806.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0008906.md b/md/UBERON/06/UBERON_0008906.md index d8667b4e4a..bc5c90184d 100644 --- a/md/UBERON/06/UBERON_0008906.md +++ b/md/UBERON/06/UBERON_0008906.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008906 * *Label* = lateral line nerve - * *Definition* = Cranial nerves that carry afferent and efferent fibers for the lateral line system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial nerves that carry afferent and efferent fibers for the lateral line system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lateral line nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001479[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral line nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001479, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral line system](../../UBERON/40/UBERON_0002540.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0009006.md b/md/UBERON/06/UBERON_0009006.md index e8c9471dad..16436dedcf 100644 --- a/md/UBERON/06/UBERON_0009006.md +++ b/md/UBERON/06/UBERON_0009006.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009006 * *Label* = deep inguinal lymph node - * *Definition* = One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004548] + * *Definition* = One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004548 ] ## Synonyms - * deep inguinal node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44225] - * nodus lymphaticus inguinalis profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44225[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nodi lymphatici inguinales profundi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004548[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * deep inguinal node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44225 ] + * nodus lymphaticus inguinalis profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44225, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nodi lymphatici inguinales profundi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004548, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0009206.md b/md/UBERON/06/UBERON_0009206.md index b120918cbb..2a371708de 100644 --- a/md/UBERON/06/UBERON_0009206.md +++ b/md/UBERON/06/UBERON_0009206.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009206 * *Label* = lateral nasal process surface ectoderm - * *Definition* = An ectoderm that is part of a lateral nasal prominence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a lateral nasal prominence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ectoderm of latero-nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16806] + * ectoderm of latero-nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16806 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral nasal prominence](../../UBERON/67/UBERON_0004067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0009506.md b/md/UBERON/06/UBERON_0009506.md index 4bb99a861d..c74fdbe1c1 100644 --- a/md/UBERON/06/UBERON_0009506.md +++ b/md/UBERON/06/UBERON_0009506.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009506 * *Label* = associated mesenchyme of middle ear - * *Definition* = Mesenchyme that is part of a middle ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a middle ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Also 1st arch maxillary mesenchyme in EHDAA2 ## Synonyms - * middle ear associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001182] + * middle ear associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001182 ] * otic mesenchyme ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle ear](../../UBERON/56/UBERON_0001756.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0009906.md b/md/UBERON/06/UBERON_0009906.md index 43323fa41b..26645f3331 100644 --- a/md/UBERON/06/UBERON_0009906.md +++ b/md/UBERON/06/UBERON_0009906.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009906 * *Label* = root of optic nerve - * *Definition* = A nerve root that continuous_with a nerve connecting eye with brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve root that continuous_with a nerve connecting eye with brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check. See comments for optic tract. FMA also has medial root. ## Synonyms - * optic nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1328] - * optic tract root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84573] - * root of optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84573] + * optic nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1328 ] + * optic tract root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84573 ] + * root of optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84573 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [nerve connecting eye with brain](../../UBERON/04/UBERON_0004904.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0010006.md b/md/UBERON/06/UBERON_0010006.md index 46b3fce17d..429b6c10e9 100644 --- a/md/UBERON/06/UBERON_0010006.md +++ b/md/UBERON/06/UBERON_0010006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010006 * *Label* = placenta intervillous maternal lacunae - * *Definition* = the spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011525] + * *Definition* = the spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011525 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0010306.md b/md/UBERON/06/UBERON_0010306.md index 3d96466d4c..a153da5c78 100644 --- a/md/UBERON/06/UBERON_0010306.md +++ b/md/UBERON/06/UBERON_0010306.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010306 * *Label* = bulbar conjunctiva - * *Definition* = The part of the conjunctiva, a thin transparent mucous membrane, that is loosely attached the orbital septum and covers the anterior surface of the sclera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Bulbar_Conjunctiva] + * *Definition* = The part of the conjunctiva, a thin transparent mucous membrane, that is loosely attached the orbital septum and covers the anterior surface of the sclera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Bulbar_Conjunctiva ] * *Comment* = covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements. ## Synonyms - * ocular conjunctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conjunctiva] + * ocular conjunctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conjunctiva ] ## Cross-references * FMA:59024 * SCTID:264509009 - * UMLS:C0229275 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bulbar_Conjunctiva] + * UMLS:C0229275 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bulbar_Conjunctiva ] * ncithesaurus:Bulbar_Conjunctiva ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0010406.md b/md/UBERON/06/UBERON_0010406.md index c69fea1cee..9fe6454d7d 100644 --- a/md/UBERON/06/UBERON_0010406.md +++ b/md/UBERON/06/UBERON_0010406.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010406 * *Label* = cholinergic enteric nerve - * *Definition* = nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001049] + * *Definition* = nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001049 ] ## Synonyms @@ -18,7 +18,7 @@ ## Superclasses * [enteric nerve](../../UBERON/80/UBERON_0010380.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cholinergic neuron](../../CL/08/CL_0000108.md) ## Equivalencies @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0010506.md b/md/UBERON/06/UBERON_0010506.md index c724874797..5160e23f77 100644 --- a/md/UBERON/06/UBERON_0010506.md +++ b/md/UBERON/06/UBERON_0010506.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010506 * *Label* = meningeal dura mater - * *Definition* = The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] + * *Definition* = The inner layer of the dura mater surrounding the brain. It is mostly fused with the outer layer, the endocranium that is adherent to the inner aspect of the cranial bones. These two layers form the dura mater. The latter covers and protects the brain and the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Meningeal_Layer_of_the_Dura_Mater ] * *Comment* = Editors note: not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area ## Synonyms - * inner layer of dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231549] - * meningeal dura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231549] - * meningeal layer of dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231549] + * inner layer of dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231549 ] + * meningeal dura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231549 ] + * meningeal layer of dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231549 ] ## Cross-references * FMA:231549 - * UMLS:C1513121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Meningeal_Layer_of_the_Dura_Mater] + * UMLS:C1513121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Meningeal_Layer_of_the_Dura_Mater ] * ncithesaurus:Meningeal_Layer_of_the_Dura_Mater ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0010706.md b/md/UBERON/06/UBERON_0010706.md index c84e33f3b8..4e142de9dc 100644 --- a/md/UBERON/06/UBERON_0010706.md +++ b/md/UBERON/06/UBERON_0010706.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010706 * *Label* = parenchyma of caudate lobe of liver - * *Definition* = A liver parenchyma that is part of a caudate lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A liver parenchyma that is part of a caudate lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * liver right caudate lobe parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001007] - * parenchyma of caudate lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18315] + * liver right caudate lobe parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001007 ] + * parenchyma of caudate lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18315 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [liver parenchyma](../../UBERON/80/UBERON_0001280.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudate lobe of liver](../../UBERON/17/UBERON_0001117.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011006.md b/md/UBERON/06/UBERON_0011006.md index e02f9a5b1f..3101f2817d 100644 --- a/md/UBERON/06/UBERON_0011006.md +++ b/md/UBERON/06/UBERON_0011006.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011006 * *Label* = endocardium of left auricle - * *Definition* = An endocardium that is part of a left atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocardium that is part of a left atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left atrium auricular region endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000277] - * left auricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13236] - * left auricle endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001231] + * left atrium auricular region endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000277 ] + * left auricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13236 ] + * left auricle endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001231 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left atrium auricular region](../../UBERON/30/UBERON_0006630.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011106.md b/md/UBERON/06/UBERON_0011106.md index e7094b55ef..e7a84cb508 100644 --- a/md/UBERON/06/UBERON_0011106.md +++ b/md/UBERON/06/UBERON_0011106.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011106 * *Label* = cruciate ligament of atlas - * *Definition* = a cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament_of_the_dens] + * *Definition* = a cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament_of_the_dens ] ## Synonyms - * cruciate ligament of dens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament_of_the_dens] - * cruciform ligament of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25018] - * cruciform ligament of dens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament_of_the_dens] - * ligamentum cruciforme atlantis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament_of_the_dens[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triradiate ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19010] + * cruciate ligament of dens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament_of_the_dens ] + * cruciform ligament of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25018 ] + * cruciform ligament of dens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament_of_the_dens ] + * ligamentum cruciforme atlantis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament_of_the_dens, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triradiate ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19010 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011206.md b/md/UBERON/06/UBERON_0011206.md index fcde9c5117..330b619440 100644 --- a/md/UBERON/06/UBERON_0011206.md +++ b/md/UBERON/06/UBERON_0011206.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011206 * *Label* = hinge joint - * *Definition* = A joint that allows motion around an axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004707[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hinge_joint] + * *Definition* = A joint that allows motion around an axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004707, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hinge_joint ] ## Synonyms - * ginglymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004707] + * ginglymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004707 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011306.md b/md/UBERON/06/UBERON_0011306.md index 9e70ef855d..264b8de8d5 100644 --- a/md/UBERON/06/UBERON_0011306.md +++ b/md/UBERON/06/UBERON_0011306.md @@ -6,7 +6,7 @@ ## Synonyms - * temporalis, deep [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * temporalis, deep [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011606.md b/md/UBERON/06/UBERON_0011606.md index 88167d5ac2..e2bc8c2cb9 100644 --- a/md/UBERON/06/UBERON_0011606.md +++ b/md/UBERON/06/UBERON_0011606.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011606 * *Label* = hyomandibular bone - * *Definition* = Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000672[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyomandibula] + * *Definition* = Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000672, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyomandibula ] * *Comment* = In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally. ## Synonyms - * hyomandibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000672] - * hyomandibular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000672[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyomandibula] + * hyomandibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000672 ] + * hyomandibular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000672, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyomandibula ] ## Cross-references @@ -28,9 +28,11 @@ * [endochondral bone](../../UBERON/13/UBERON_0002513.md) * [hyomandibular element](../../UBERON/08/UBERON_0011608.md) * [develops from](../../RO/02/RO_0002202.md) some [hyomandibular cartilage](../../UBERON/07/UBERON_0011607.md) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Equivalencies + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [hyomandibular element](../../UBERON/08/UBERON_0011608.md) ## Other Logical Axioms @@ -45,8 +47,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011806.md b/md/UBERON/06/UBERON_0011806.md index 890e6feb55..833bfd0da7 100644 --- a/md/UBERON/06/UBERON_0011806.md +++ b/md/UBERON/06/UBERON_0011806.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011806 * *Label* = dermis of feather follicle - * *Definition* = A tissue that is part of a dermis and is part of a feather follicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tissue that is part of a dermis and is part of a feather follicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [dermis](../../UBERON/67/UBERON_0002067.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather follicle](../../UBERON/82/UBERON_0011782.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011806 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0011906.md b/md/UBERON/06/UBERON_0011906.md index 5d94b6e679..e997925046 100644 --- a/md/UBERON/06/UBERON_0011906.md +++ b/md/UBERON/06/UBERON_0011906.md @@ -6,10 +6,10 @@ ## Synonyms - * caput (musculus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85453] - * caput musculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85453] - * head of muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85453] - * muscular organ head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85453] + * caput (musculus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85453 ] + * caput musculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85453 ] + * head of muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85453 ] + * muscular organ head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85453 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011906 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0012106.md b/md/UBERON/06/UBERON_0012106.md index dd5a5eb4ae..81b3f76d60 100644 --- a/md/UBERON/06/UBERON_0012106.md +++ b/md/UBERON/06/UBERON_0012106.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012106 * *Label* = baleen plate bristle - * *Definition* = A keratinous bristle that enables filter feeding in the mouth of mysticete whales. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:baleen] + * *Definition* = A keratinous bristle that enables filter feeding in the mouth of mysticete whales. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:baleen ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0012306.md b/md/UBERON/06/UBERON_0012306.md index 4ecb95c065..7fbf7dadb8 100644 --- a/md/UBERON/06/UBERON_0012306.md +++ b/md/UBERON/06/UBERON_0012306.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral cervical node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61232] + * lateral cervical node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61232 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012306 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013106.md b/md/UBERON/06/UBERON_0013106.md index 565a00bf68..9b66b69386 100644 --- a/md/UBERON/06/UBERON_0013106.md +++ b/md/UBERON/06/UBERON_0013106.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013106 * *Label* = elapid venom - * *Definition* = Venoms from snakes of the family Elapidae, including cobras, kraits, mambas, coral, tiger, and Australian snakes. The venoms contain polypeptide toxins of various kinds, cytolytic, hemolytic, and neurotoxic factors, but fewer enzymes than viper or crotalid venoms. Many of the toxins have been characterized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.325] + * *Definition* = Venoms from snakes of the family Elapidae, including cobras, kraits, mambas, coral, tiger, and Australian snakes. The venoms contain polypeptide toxins of various kinds, cytolytic, hemolytic, and neurotoxic factors, but fewer enzymes than viper or crotalid venoms. Many of the toxins have been characterized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.325 ] ## Synonyms - * elapid venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.325] + * elapid venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.325 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013206.md b/md/UBERON/06/UBERON_0013206.md index e675ea9fb0..b8f97b92a5 100644 --- a/md/UBERON/06/UBERON_0013206.md +++ b/md/UBERON/06/UBERON_0013206.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013206 * *Label* = nasal tentacle - * *Definition* = A fleshy appendage ringing the snout of a Star-nosed mole. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Star-nosed_mole] + * *Definition* = A fleshy appendage ringing the snout of a Star-nosed mole. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Star-nosed_mole ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013206 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013406.md b/md/UBERON/06/UBERON_0013406.md index 070ed3126b..3f6227f115 100644 --- a/md/UBERON/06/UBERON_0013406.md +++ b/md/UBERON/06/UBERON_0013406.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013406 * *Label* = bregma - * *Definition* = The bregma is the anatomical point on the skull at which the coronal suture is intersected perpendicularly by the sagittal suture. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bregma] + * *Definition* = The bregma is the anatomical point on the skull at which the coronal suture is intersected perpendicularly by the sagittal suture. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bregma ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cranial point where the coronal and sagittal suture lines intersect[FMA:264776]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013506.md b/md/UBERON/06/UBERON_0013506.md index e6e46f0e95..7ca9be2b5c 100644 --- a/md/UBERON/06/UBERON_0013506.md +++ b/md/UBERON/06/UBERON_0013506.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013606.md b/md/UBERON/06/UBERON_0013606.md index fe916c2cda..a9b91db5d3 100644 --- a/md/UBERON/06/UBERON_0013606.md +++ b/md/UBERON/06/UBERON_0013606.md @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [magnocellular neurosecretory cell](../../CL/03/CL_0011003.md) and [layer of lateral geniculate body](../../UBERON/05/UBERON_0013605.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0013706.md b/md/UBERON/06/UBERON_0013706.md index 8900fac4e2..2edec82932 100644 --- a/md/UBERON/06/UBERON_0013706.md +++ b/md/UBERON/06/UBERON_0013706.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0014406.md b/md/UBERON/06/UBERON_0014406.md index 125c5f95b2..0f8c5dc737 100644 --- a/md/UBERON/06/UBERON_0014406.md +++ b/md/UBERON/06/UBERON_0014406.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014406 * *Label* = nauplius stage - * *Definition* = The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Crustacean_larvae#Nauplius] + * *Definition* = The free-swimming first stage of the larva of certain crustaceans, having an unsegmented body with three pairs of appendages and a single median eye. The eye is known for that reason as the 'naupliar eye', and is often absent in later developmental stages, although it is retained into the adult form in some groups, such as the Notostraca. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Crustacean_larvae#Nauplius ] ## Synonyms - * nauplius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000915] + * nauplius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000915 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A crustacean larva in usually the first stage after leaving the egg and with three pairs of appendages, a median eye, and little or no segmentation[BTO:0000915]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014406 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0014506.md b/md/UBERON/06/UBERON_0014506.md index ec7e3f7195..bfbea76d44 100644 --- a/md/UBERON/06/UBERON_0014506.md +++ b/md/UBERON/06/UBERON_0014506.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014506 * *Label* = distal interphalangeal joint of digit 3 - * *Definition* = A distal inter-phalangeal joint that is part of the 3rd digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal inter-phalangeal joint that is part of the 3rd digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = in Equidae, this is known as the coffin joint, and is the articulation between the short pastern bone (P2) and the coffin bone (P3 / distal phalanx) ## Synonyms - * coffin joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine distal interphalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine second interphalangeal joint of limb digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * coffin joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine distal interphalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine second interphalangeal joint of limb digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * distal interphalangeal joint 3 ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014506 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0014606.md b/md/UBERON/06/UBERON_0014606.md index 4a1485d327..7b82e0e3fc 100644 --- a/md/UBERON/06/UBERON_0014606.md +++ b/md/UBERON/06/UBERON_0014606.md @@ -6,21 +6,21 @@ ## Synonyms - * infundibular stem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1248[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * InfS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1248[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * hypophyseal infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1248] - * infundibular stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1248] - * infundibular stem of neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1248] - * infundibulum of posterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1248] + * infundibular stem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1248, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * InfS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1248, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * hypophyseal infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1248 ] + * infundibular stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1248 ] + * infundibular stem of neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1248 ] + * infundibulum of posterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1248 ] ## Cross-references * BAMS:InfS * NIF_GrossAnatomy:birnlex_1248 - * NeuroNames:405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1248] + * NeuroNames:405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1248 ] * SCTID:425300001 - * UMLS:C0175325 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1248] - * UMLS:C0447641 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1248] + * UMLS:C0175325 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1248 ] + * UMLS:C0447641 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1248 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014606 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0014706.md b/md/UBERON/06/UBERON_0014706.md index 94ef6b5b2c..fdfcb354f2 100644 --- a/md/UBERON/06/UBERON_0014706.md +++ b/md/UBERON/06/UBERON_0014706.md @@ -6,8 +6,8 @@ ## Synonyms - * metanephros primitive collecting ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001147] - * primitive collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17646] + * metanephros primitive collecting ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001147 ] + * primitive collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17646 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014706 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0015006.md b/md/UBERON/06/UBERON_0015006.md index 4471de8511..ae765c7294 100644 --- a/md/UBERON/06/UBERON_0015006.md +++ b/md/UBERON/06/UBERON_0015006.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015006 * *Label* = coccygeal vertebra endochondral element - * *Definition* = A coccygeal vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A coccygeal vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * coccygeal vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * coccygeal vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * coccygeal vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * coccygeal vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [coccygeal vertebra cartilage element](../../UBERON/17/UBERON_0013517.md)or[coccygeal vertebra pre-cartilage condensation](../../UBERON/18/UBERON_0013518.md)or[coccygeal vertebra](../../UBERON/70/UBERON_0006070.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_0015106.md b/md/UBERON/06/UBERON_0015106.md index d2c7b3ff14..957dcb95d8 100644 --- a/md/UBERON/06/UBERON_0015106.md +++ b/md/UBERON/06/UBERON_0015106.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone 2 endochondral element](../../UBERON/05/UBERON_0015105.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015106 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_1000006.md b/md/UBERON/06/UBERON_1000006.md index bd56e3a4ee..a1bce34427 100644 --- a/md/UBERON/06/UBERON_1000006.md +++ b/md/UBERON/06/UBERON_1000006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000006 * *Label* = collection of hair on forehead - * *Definition* = A collection of hairs that grows on the forehead. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A collection of hairs that grows on the forehead. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hairs](../../UBERON/64/UBERON_0010164.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forehead](../../UBERON/00/UBERON_0008200.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000006 + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_1500006.md b/md/UBERON/06/UBERON_1500006.md index 957539676d..55f2b7637c 100644 --- a/md/UBERON/06/UBERON_1500006.md +++ b/md/UBERON/06/UBERON_1500006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1500006 * *Label* = paired fin radial bone - * *Definition* = paired fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = paired fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [paired fin radial element](../../UBERON/06/UBERON_1600006.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) and [radial bone](../../UBERON/71/UBERON_2000271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_1600006.md b/md/UBERON/06/UBERON_1600006.md index b328c6bdb0..366692d3b6 100644 --- a/md/UBERON/06/UBERON_1600006.md +++ b/md/UBERON/06/UBERON_1600006.md @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_1700006.md b/md/UBERON/06/UBERON_1700006.md index 6a26af6e70..748c3b4949 100644 --- a/md/UBERON/06/UBERON_1700006.md +++ b/md/UBERON/06/UBERON_1700006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1700006 * *Label* = paired fin radial cartilage - * *Definition* = paired fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = paired fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [paired fin radial element](../../UBERON/06/UBERON_1600006.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2000006.md b/md/UBERON/06/UBERON_2000006.md index dbf7ecf141..02906cbc9b 100644 --- a/md/UBERON/06/UBERON_2000006.md +++ b/md/UBERON/06/UBERON_2000006.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000006 * *Label* = ball - * *Definition* = The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * yolk ball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * yolk ball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2000106.md b/md/UBERON/06/UBERON_2000106.md index 4564d8415f..74c23a586a 100644 --- a/md/UBERON/06/UBERON_2000106.md +++ b/md/UBERON/06/UBERON_2000106.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000106 * *Label* = extension - * *Definition* = The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * yolk extension [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * yolk extension [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2000406.md b/md/UBERON/06/UBERON_2000406.md index f05415e48a..4b4b4580b5 100644 --- a/md/UBERON/06/UBERON_2000406.md +++ b/md/UBERON/06/UBERON_2000406.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2000506.md b/md/UBERON/06/UBERON_2000506.md index 25ced9e543..5fcdc76dcb 100644 --- a/md/UBERON/06/UBERON_2000506.md +++ b/md/UBERON/06/UBERON_2000506.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_2000606.md b/md/UBERON/06/UBERON_2000606.md index 2dec23b4a2..569d033c69 100644 --- a/md/UBERON/06/UBERON_2000606.md +++ b/md/UBERON/06/UBERON_2000606.md @@ -8,7 +8,7 @@ no information about this class, may be zebrafish specific nomenclature. ## Synonyms - * ventral oblique branchial muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ventral oblique branchial muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,8 +30,10 @@ no information about this class, may be zebrafish specific nomenclature. * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_2000806.md b/md/UBERON/06/UBERON_2000806.md index 42645211c4..eccefff0bd 100644 --- a/md/UBERON/06/UBERON_2000806.md +++ b/md/UBERON/06/UBERON_2000806.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000806[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000806, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_2001006.md b/md/UBERON/06/UBERON_2001006.md index 5cb915ce40..18c9b87e36 100644 --- a/md/UBERON/06/UBERON_2001006.md +++ b/md/UBERON/06/UBERON_2001006.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001006[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001006, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_2001406.md b/md/UBERON/06/UBERON_2001406.md index d734f20498..1af37686f5 100644 --- a/md/UBERON/06/UBERON_2001406.md +++ b/md/UBERON/06/UBERON_2001406.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001406 * *Label* = kinethmoid bone - * *Definition* = Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The kinethmoid is part of the protrusion mechanism of the upper jaw and is restricted to cypriniform fishes. ## Synonyms - * kinethmoideum bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001406] + * kinethmoideum bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001406 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2001606.md b/md/UBERON/06/UBERON_2001606.md index f91384b400..832c8510f7 100644 --- a/md/UBERON/06/UBERON_2001606.md +++ b/md/UBERON/06/UBERON_2001606.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001606 * *Label* = caudal scute - * *Definition* = Scute that is a median bony plate forming anterior to procurrent caudal fin rays. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scute that is a median bony plate forming anterior to procurrent caudal fin rays. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2001706.md b/md/UBERON/06/UBERON_2001706.md index 6db9389ab1..d8775b6e01 100644 --- a/md/UBERON/06/UBERON_2001706.md +++ b/md/UBERON/06/UBERON_2001706.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001706 * *Label* = infraorbital 11 - * *Definition* = Infraorbital that is the eleventh bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the eleventh bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2001806.md b/md/UBERON/06/UBERON_2001806.md index 74fcb16d6a..af2d3611be 100644 --- a/md/UBERON/06/UBERON_2001806.md +++ b/md/UBERON/06/UBERON_2001806.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001806 * *Label* = intracranial diverticulum of swimbladder - * *Definition* = An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2001906.md b/md/UBERON/06/UBERON_2001906.md index e84e45506b..0c0597281c 100644 --- a/md/UBERON/06/UBERON_2001906.md +++ b/md/UBERON/06/UBERON_2001906.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2002006.md b/md/UBERON/06/UBERON_2002006.md index 800d87ef5e..7e071b9e3c 100644 --- a/md/UBERON/06/UBERON_2002006.md +++ b/md/UBERON/06/UBERON_2002006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002006 * *Label* = axillary pore - * *Definition* = Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2002106.md b/md/UBERON/06/UBERON_2002106.md index cd2a3e19ec..88e24dc38c 100644 --- a/md/UBERON/06/UBERON_2002106.md +++ b/md/UBERON/06/UBERON_2002106.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002106 * *Label* = eminentia granularis - * *Definition* = Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] ## Synonyms - * EG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002106] + * EG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002106 ] ## Cross-references @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2002206.md b/md/UBERON/06/UBERON_2002206.md index 53dbd5c427..ed69a03425 100644 --- a/md/UBERON/06/UBERON_2002206.md +++ b/md/UBERON/06/UBERON_2002206.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2005106.md b/md/UBERON/06/UBERON_2005106.md index d0d01e1cb5..7a96832992 100644 --- a/md/UBERON/06/UBERON_2005106.md +++ b/md/UBERON/06/UBERON_2005106.md @@ -6,7 +6,7 @@ ## Synonyms - * LLL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005106] + * LLL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005106 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_2005206.md b/md/UBERON/06/UBERON_2005206.md index e2e8d232e4..0380810875 100644 --- a/md/UBERON/06/UBERON_2005206.md +++ b/md/UBERON/06/UBERON_2005206.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 2 medial interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005206] + * rostral medial 2 medial interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005206 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/06/UBERON_3000006.md b/md/UBERON/06/UBERON_3000006.md index 04400bfc68..5bc98f4199 100644 --- a/md/UBERON/06/UBERON_3000006.md +++ b/md/UBERON/06/UBERON_3000006.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000006 * *Label* = alveolar foramen - * *Definition* = Foramen for the R. alveolaris of Nerve VII and the alveolar artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Foramen for the R. alveolaris of Nerve VII and the alveolar artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * inferior dental foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000006] + * inferior dental foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000006 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3000406.md b/md/UBERON/06/UBERON_3000406.md index 462ea913a5..eaf783ac41 100644 --- a/md/UBERON/06/UBERON_3000406.md +++ b/md/UBERON/06/UBERON_3000406.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000406 * *Label* = pars interna plectri - * *Definition* = Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AOO:LAP] + * *Definition* = Plate-like structure that lies in the fenestra ovalis. It arises within the membrana opercularis in the posterior part of the fenestra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AOO:LAP ] ## Synonyms - * operculum auris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000406] - * operculum fenestrae ovalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000406] + * operculum auris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000406 ] + * operculum fenestrae ovalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000406 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3000806.md b/md/UBERON/06/UBERON_3000806.md index 88536fc4ea..072fc5b9d2 100644 --- a/md/UBERON/06/UBERON_3000806.md +++ b/md/UBERON/06/UBERON_3000806.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000806 * *Label* = carina medialis - * *Definition* = In a zygapophysis that has ridges and sulci, the medial ridge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a zygapophysis that has ridges and sulci, the medial ridge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3000906.md b/md/UBERON/06/UBERON_3000906.md index ad12da5ee5..278307c787 100644 --- a/md/UBERON/06/UBERON_3000906.md +++ b/md/UBERON/06/UBERON_3000906.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000906 * *Label* = sulcus pro musculo extensori cruris brevis - * *Definition* = Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010006.md b/md/UBERON/06/UBERON_3010006.md index d6394212a3..218f18f164 100644 --- a/md/UBERON/06/UBERON_3010006.md +++ b/md/UBERON/06/UBERON_3010006.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010106.md b/md/UBERON/06/UBERON_3010106.md index 3b4fa9a6e8..e5ad5f92e7 100644 --- a/md/UBERON/06/UBERON_3010106.md +++ b/md/UBERON/06/UBERON_3010106.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010306.md b/md/UBERON/06/UBERON_3010306.md index c69a997f04..0b85b2f955 100644 --- a/md/UBERON/06/UBERON_3010306.md +++ b/md/UBERON/06/UBERON_3010306.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010506.md b/md/UBERON/06/UBERON_3010506.md index 92eb9c7757..bfffd1d8b1 100644 --- a/md/UBERON/06/UBERON_3010506.md +++ b/md/UBERON/06/UBERON_3010506.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010506 * *Label* = postcaval vein - * *Definition* = One of three major veins which enter the sinus venosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = One of three major veins which enter the sinus venosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010606.md b/md/UBERON/06/UBERON_3010606.md index e1cb0b6622..c4c2b01258 100644 --- a/md/UBERON/06/UBERON_3010606.md +++ b/md/UBERON/06/UBERON_3010606.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_3010706.md b/md/UBERON/06/UBERON_3010706.md index 2ff285b005..10e7733f82 100644 --- a/md/UBERON/06/UBERON_3010706.md +++ b/md/UBERON/06/UBERON_3010706.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4000106.md b/md/UBERON/06/UBERON_4000106.md index 5576b87159..a625ff5eca 100644 --- a/md/UBERON/06/UBERON_4000106.md +++ b/md/UBERON/06/UBERON_4000106.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000106 * *Label* = vasodentine - * *Definition* = Dentine tissue that lacks dentine tubules and that is penetrated by blood capillaries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Dentine tissue that lacks dentine tubules and that is penetrated by blood capillaries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * vascular dentine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * vascular dentine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4100006.md b/md/UBERON/06/UBERON_4100006.md index b4566cd158..d7c46ed208 100644 --- a/md/UBERON/06/UBERON_4100006.md +++ b/md/UBERON/06/UBERON_4100006.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4200006.md b/md/UBERON/06/UBERON_4200006.md index 023a3fbd3c..e983af48a9 100644 --- a/md/UBERON/06/UBERON_4200006.md +++ b/md/UBERON/06/UBERON_4200006.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = A.Dececchi - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4200106.md b/md/UBERON/06/UBERON_4200106.md index c02949cff3..38b90d2f52 100644 --- a/md/UBERON/06/UBERON_4200106.md +++ b/md/UBERON/06/UBERON_4200106.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4300006.md b/md/UBERON/06/UBERON_4300006.md index ee1eb78c96..987ac7e54c 100644 --- a/md/UBERON/06/UBERON_4300006.md +++ b/md/UBERON/06/UBERON_4300006.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/06/UBERON_4400006.md b/md/UBERON/06/UBERON_4400006.md index 318e92f450..83edc68205 100644 --- a/md/UBERON/06/UBERON_4400006.md +++ b/md/UBERON/06/UBERON_4400006.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4400006 * *Label* = elastoidin fin ray - * *Definition* = Fin ray that is composed of elastoidin, unmineralized, and unsegmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/129] + * *Definition* = Fin ray that is composed of elastoidin, unmineralized, and unsegmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/129 ] ## Synonyms @@ -26,7 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0000007.md b/md/UBERON/07/UBERON_0000007.md index 8dd8db9887..75453e53b9 100644 --- a/md/UBERON/07/UBERON_0000007.md +++ b/md/UBERON/07/UBERON_0000007.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000007 * *Label* = pituitary gland - * *Definition* = The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pituitary_gland[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pituitary_gland, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamicpituitarygonadal (HPG) and hypothalamicpituitarythyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9] ## Synonyms - * pituitary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001073] - * pituitary body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001073] - * Hp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1353[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * glandula pituitaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001073] - * glandula pituitaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pituitary_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000118] - * hypophysis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000176] - * posterior inferotemporal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PIT] + * pituitary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001073 ] + * pituitary body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001073 ] + * Hp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1353, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * glandula pituitaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001073 ] + * glandula pituitaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pituitary_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000118 ] + * hypophysis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000176 ] + * posterior inferotemporal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PIT ] ## Cross-references @@ -39,12 +39,12 @@ * MESH:A06.407.747 * MIAA:0000077 * NIF_GrossAnatomy:birnlex_1353 - * NeuroNames:399 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1353] + * NeuroNames:399 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1353 ] * OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA * SCTID:181125003 * TAO:0000118 - * UMLS:C0032005 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1353] - * UMLS:C0032005 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pituitary_Gland] + * UMLS:C0032005 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1353 ] + * UMLS:C0032005 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pituitary_Gland ] * VHOG:0000143 * Wikipedia:Pituitary_gland * XAO:0000017 @@ -86,8 +86,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0000107.md b/md/UBERON/07/UBERON_0000107.md index 8c71d244e5..4a5e071a7f 100644 --- a/md/UBERON/07/UBERON_0000107.md +++ b/md/UBERON/07/UBERON_0000107.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000107 * *Label* = cleavage stage - * *Definition* = The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0040016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cleavage_(embryo)] + * *Definition* = The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0040016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cleavage_(embryo) ] ## Synonyms @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [life cycle stage](../../UBERON/05/UBERON_0000105.md) and [simultaneous_with](../../RO/82/RO_0002082.md) some [embryonic cleavage](../../GO/16/GO_0040016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0000207.md b/md/UBERON/07/UBERON_0000207.md index af8a909080..90484913ce 100644 --- a/md/UBERON/07/UBERON_0000207.md +++ b/md/UBERON/07/UBERON_0000207.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000207 * *Label* = compound eye corneal lens - * *Definition* = A chitinous extracellular secretion of the four underlying cone cells and the pigment cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048058] + * *Definition* = A chitinous extracellular secretion of the four underlying cone cells and the pigment cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048058 ] ## Synonyms @@ -33,8 +33,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T01:35:32Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0000307.md b/md/UBERON/07/UBERON_0000307.md index 61445e8319..70c832ffe5 100644 --- a/md/UBERON/07/UBERON_0000307.md +++ b/md/UBERON/07/UBERON_0000307.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000307 * *Label* = blastula - * *Definition* = Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastula] + * *Definition* = Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastula ] * *Comment* = TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula ## Synonyms - * blastula embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000059] - * blastosphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastula] + * blastula embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000059 ] + * blastosphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastula ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [blastula stage](../../UBERON/08/UBERON_0000108.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007011 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0000407.md b/md/UBERON/07/UBERON_0000407.md index 43836f9a11..7fd4e16242 100644 --- a/md/UBERON/07/UBERON_0000407.md +++ b/md/UBERON/07/UBERON_0000407.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000407 * *Label* = sympathetic trunk - * *Definition* = One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_trunk] + * *Definition* = One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_trunk ] ## Synonyms - * gangliated cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_trunk] - * sympathetic chain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6258] - * sympathetic ganglionic chain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_trunk] - * truncus sympathicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_trunk[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gangliated cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_trunk ] + * sympathetic chain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6258 ] + * sympathetic ganglionic chain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_trunk ] + * truncus sympathicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_trunk, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001007.md b/md/UBERON/07/UBERON_0001007.md index eec1be4772..a872856f3b 100644 --- a/md/UBERON/07/UBERON_0001007.md +++ b/md/UBERON/07/UBERON_0001007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001007 * *Label* = digestive system - * *Definition* = Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:alimentary+system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digestive_system,] + * *Definition* = Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:alimentary+system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digestive_system, ] * *Comment* = note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class ## Synonyms @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable_of](../../RO/15/RO_0002215.md) some [digestion](../../GO/86/GO_0007586.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = digestive - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001107.md b/md/UBERON/07/UBERON_0001107.md index 479e776e09..91d1def520 100644 --- a/md/UBERON/07/UBERON_0001107.md +++ b/md/UBERON/07/UBERON_0001107.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001107 * *Label* = sternohyoid muscle - * *Definition* = The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle] + * *Definition* = The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle ] * *Comment* = Action: draws hyoid posteriorly . AO notes: Note that as defined here, this structure attaches to the sternum, which is a tetrapod structure. TAO has class 'sternohyoid' as part of mandibular muscle, but no sternum, so excluded here. The TAO/ZFA class has no definition, but the dictionary of icthyology states: "a large muscle originating on the ventral spine of the postcleithrum and inserting on the sides of the urohyal. It functions in rapid opening of the jaw and expanding the buccal cavity" - a generic way of grouping these is via a hyoid - girdle connection ## Synonyms - * sternohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle] - * sternohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle] - * sternohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle] - * musculus sternohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sternohyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * sternohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle ] + * sternohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle ] + * sternohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle ] + * musculus sternohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sternohyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:13341 * MA:0002383 * SCTID:244830003 - * UMLS:C0224162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternohyoid] + * UMLS:C0224162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternohyoid ] * Wikipedia:Sternohyoid_muscle * http://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001207.md b/md/UBERON/07/UBERON_0001207.md index 22d15f04c7..99db96c31b 100644 --- a/md/UBERON/07/UBERON_0001207.md +++ b/md/UBERON/07/UBERON_0001207.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001207 * *Label* = mucosa of large intestine - * *Definition* = A mucosa that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * large intestinal mucosa * large intestine mucosa - * large intestine mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * large intestine mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of large intestine - * organ mucosa of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa intestini crassi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14969[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organ mucosa of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa intestini crassi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14969, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * CALOHA:TS-2106 * FMA:14969 * MA:0002688 - * UMLS:C0734203 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Mucosa] + * UMLS:C0734203 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Mucosa ] * ncithesaurus:Large_Intestinal_Mucosa ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001307.md b/md/UBERON/07/UBERON_0001307.md index 4fec31926f..61d7c02c61 100644 --- a/md/UBERON/07/UBERON_0001307.md +++ b/md/UBERON/07/UBERON_0001307.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001307 * *Label* = capsule of ovary - * *Definition* = A capsule that surrounds a female gonad. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capsule that surrounds a female gonad. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:18662 * MA:0001706 * SCTID:258491008 - * UMLS:C0227877 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Capsule] + * UMLS:C0227877 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Capsule ] * ncithesaurus:Ovarian_Capsule ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001407.md b/md/UBERON/07/UBERON_0001407.md index d4f20fefd0..79a38f08b2 100644 --- a/md/UBERON/07/UBERON_0001407.md +++ b/md/UBERON/07/UBERON_0001407.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001407 * *Label* = semispinalis thoracis - * *Definition* = The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebr, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_dorsi] + * *Definition* = The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebr, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_dorsi ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * semispinalis dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_dorsi] - * semispinalis dorsi muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_dorsi] - * musculus semispinalis dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_dorsi[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus semispinalis thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_dorsi[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * semispinalis dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_dorsi ] + * semispinalis dorsi muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_dorsi ] + * musculus semispinalis dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_dorsi, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus semispinalis thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_dorsi, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:22828 * MA:0002374 * SCTID:244868001 - * UMLS:C0224316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semispinalis_Thoracis] + * UMLS:C0224316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semispinalis_Thoracis ] * Wikipedia:Semispinalis_dorsi * http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001507.md b/md/UBERON/07/UBERON_0001507.md index 22c3765d4f..ef0bd942b6 100644 --- a/md/UBERON/07/UBERON_0001507.md +++ b/md/UBERON/07/UBERON_0001507.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001507 * *Label* = biceps brachii - * *Definition* = A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle] + * *Definition* = A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle ] ## Synonyms - * biceps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000167] - * biceps brachii %26 brachialis muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle] - * biceps brachii muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle] - * biceps cubiti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle] - * biceps muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle] - * musculus biceps brachii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * biceps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000167 ] + * biceps brachii %26 brachialis muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle ] + * biceps brachii muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle ] + * biceps cubiti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle ] + * biceps muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle ] + * musculus biceps brachii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:37670 * MA:0002269 * SCTID:265802004 - * UMLS:C0559499 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Biceps] + * UMLS:C0559499 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Biceps ] * VHOG:0000861 * Wikipedia:Biceps_brachii_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c2/Biceps_brachii.png @@ -54,8 +54,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001607.md b/md/UBERON/07/UBERON_0001607.md index 6744a6699c..49da8063d0 100644 --- a/md/UBERON/07/UBERON_0001607.md +++ b/md/UBERON/07/UBERON_0001607.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001607 * *Label* = sphincter pupillae - * *Definition* = The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] + * *Definition* = The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] * *Comment* = Taxon notes: WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure. Function notes: constricts iris ## Synonyms * M. sphincter pupillae - * iris sphincter muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000656] - * musculus sphincter pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000656] - * sphincter muscle of pupil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000656] - * circular fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * constrictor pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] + * iris sphincter muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000656 ] + * musculus sphincter pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000656 ] + * sphincter muscle of pupil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000656 ] + * circular fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * constrictor pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] * iris constrictor - * iris constrictor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * iris sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * m. sphincter pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pupillary constrictor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * pupillary sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * pupillary sphincter muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * sphincter pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * sphincter pupillae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] - * spincter pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_sphincter_muscle] + * iris constrictor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * iris sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * m. sphincter pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pupillary constrictor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * pupillary sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * pupillary sphincter muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * sphincter pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * sphincter pupillae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] + * spincter pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_sphincter_muscle ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:49157 * MA:0001289 * SCTID:280889004 - * UMLS:C0229189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphincter_Pupillae_Muscle] + * UMLS:C0229189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphincter_Pupillae_Muscle ] * Wikipedia:Iris_sphincter_muscle * http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png @@ -53,15 +53,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001707.md b/md/UBERON/07/UBERON_0001707.md index 05972a9a3f..18395b577d 100644 --- a/md/UBERON/07/UBERON_0001707.md +++ b/md/UBERON/07/UBERON_0001707.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001707 * *Label* = nasal cavity - * *Definition* = An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An anatomical cavity that is part of the olfactory apparatus. This includes the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP]. Editor note: defne the boundaries of this cavity for a variety of species and check that parthood relations are not too strong. ## Synonyms * cavity of nose - * nasal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000130] - * nasal fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_cavity] - * cavitas nasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002096] - * cavitas nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002096] - * cavitas nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavum nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nasal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000130 ] + * nasal fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_cavity ] + * cavitas nasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002096 ] + * cavitas nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002096 ] + * cavitas nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavum nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nasal pit * olfactory cavity - * olfactory pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000130[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * olfactory pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000130, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -32,7 +32,7 @@ * MESH:A04.531.449 * SCTID:263481003 * TAO:0000130 - * UMLS:C0027423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Cavity] + * UMLS:C0027423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Cavity ] * VHOG:0000271 * Wikipedia:Nasal_cavity * ZFA:0000130 @@ -64,8 +64,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a large air filled space above and behind the nose in the middle of the face[WP][Wikipedia:Nasal_cavity]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Despite significant modification to the nasal cavity within Archosauria and its extreme hypertrophy and supraorbital development in Lambeosaurinae, the neural olfactory system and the olfactory region of the nasal cavity proper retain their plesiomorphic positions and associations, suggesting that this system is highly conserved in vertebrate evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001807.md b/md/UBERON/07/UBERON_0001807.md index de8d0a98e8..f82b0b6b40 100644 --- a/md/UBERON/07/UBERON_0001807.md +++ b/md/UBERON/07/UBERON_0001807.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001807 * *Label* = paravertebral ganglion - * *Definition* = Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglion[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglion, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ganglion of sympathetic trunk * ganglion trunci sympathetici - * ganglion trunci sympathici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5891[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion trunci sympathici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5891, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sympathetic chain ganglion ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0001907.md b/md/UBERON/07/UBERON_0001907.md index 649b4be8e5..4e1020769c 100644 --- a/md/UBERON/07/UBERON_0001907.md +++ b/md/UBERON/07/UBERON_0001907.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001907 * *Label* = zona incerta - * *Definition* = The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbicmotor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschnes of Universit Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_incerta] + * *Definition* = The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to 'limbicmotor integration' such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a 'region of which nothing certain can be said'. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschnes of Universit Laval noted that the 'zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ' [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_incerta ] ## Synonyms - * nucleus of the zona incerta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ZI] - * zona incerta proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ZI] + * nucleus of the zona incerta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ZI ] + * zona incerta proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ZI ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002007.md b/md/UBERON/07/UBERON_0002007.md index df3b816346..852fc69616 100644 --- a/md/UBERON/07/UBERON_0002007.md +++ b/md/UBERON/07/UBERON_0002007.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002007 * *Label* = medulla of lymph node - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovary_of_lymph_node] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovary_of_lymph_node ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lymph node medulla - * medulla nodi lymphoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medulla_of_lymph_node[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medulla nodi lymphoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medulla_of_lymph_node, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002107.md b/md/UBERON/07/UBERON_0002107.md index 16898ad93c..5913bb3a1d 100644 --- a/md/UBERON/07/UBERON_0002107.md +++ b/md/UBERON/07/UBERON_0002107.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002107 * *Label* = liver - * *Definition* = An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000759[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Liver] + * *Definition* = An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000759, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Liver ] * *Comment* = AO notes: Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function. Taxon notes: WP: The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.[7] An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver. // The zebrafish liver differs from the mammalian liver in that the hepatocytes are not clearly organized in cords or lobules and the typical portal triads are not apparent. In addition, the zebrafish liver does not have Kuppfer cells. Furthermore, a clear distinction can be made between the male and female liver in the adult zebrafish. The female hepatocytes are very basophilic (Figure 15c) as a result of the production of vitellogenin (Van der Ven et al. 2003). ## Synonyms - * iecur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * jecur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * iecur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * jecur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA * SCTID:181268008 * TAO:0000123 - * UMLS:C0023884 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Liver] + * UMLS:C0023884 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Liver ] * VHOG:0000257 * Wikipedia:Liver * XAO:0000133 @@ -60,7 +60,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [exocrine system](../../UBERON/30/UBERON_0002330.md) * [part_of](../../BFO/50/BFO_0000050.md) some [hepatobiliary system](../../UBERON/23/UBERON_0002423.md) * [has_part](../../BFO/51/BFO_0000051.md) some [hepatocyte](../../CL/82/CL_0000182.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [immune system](../../UBERON/05/UBERON_0002405.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) * [develops from](../../RO/02/RO_0002202.md) some [liver primordium](../../UBERON/94/UBERON_0003894.md) * [develops from](../../RO/02/RO_0002202.md) some [septum transversum](../../UBERON/61/UBERON_0004161.md) @@ -80,8 +80,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All vertebrates possess a liver (reference 1); Later in craniate evolution, an anterior gill arch was transformed into jaws, and many new types of feeding subsequently evolved.(...) A liver evolved that, among its many functions, stores considerable energy as glycogen or lipid (reference 2).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hepatic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002207.md b/md/UBERON/07/UBERON_0002207.md index 5408595fc1..122c0f470e 100644 --- a/md/UBERON/07/UBERON_0002207.md +++ b/md/UBERON/07/UBERON_0002207.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002207 * *Label* = xiphoid process - * *Definition* = A cartilaginous extension to the distal part of the sternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376] + * *Definition* = A cartilaginous extension to the distal part of the sternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376 ] * *Comment* = this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements. Taxon notes: usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted] ## Synonyms - * xiphisternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xiphoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7488] + * xiphisternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * xiphoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7488 ] * xiphoid process of sternum - * metasternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * processus xiphoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus xiphoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xiphoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xiphoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xiphoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xiphosternal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] - * xyphoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] + * metasternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * processus xiphoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * processus xiphoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * xiphoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * xiphoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * xiphoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * xiphosternal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] + * xyphoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] ## Cross-references * FMA:7488 * MA:0001334 * SCTID:272711000 - * UMLS:C0043356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Xiphoid_Process] + * UMLS:C0043356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Xiphoid_Process ] * Wikipedia:Xiphoid_process * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002307.md b/md/UBERON/07/UBERON_0002307.md index 3967d12e06..5c1f1d896d 100644 --- a/md/UBERON/07/UBERON_0002307.md +++ b/md/UBERON/07/UBERON_0002307.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002307 * *Label* = choroid plexus of lateral ventricle - * *Definition* = A choroid plexus that is part of a lateral ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus that is part of a lateral ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * chorioid plexus of cerebral hemisphere of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * chorioid plexus of lateral ventricle - * choroid plexus telencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001447] - * lateral ventricle chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * choroid plexus telencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001447 ] + * lateral ventricle chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lateral ventricle choroid plexus ## Cross-references @@ -24,7 +24,7 @@ * NeuroNames:218 * SCTID:70064002 * TAO:0001447 - * UMLS:C0152289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle] + * UMLS:C0152289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle ] * VHOG:0001376 * ZFA:0001447 * ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus](../../UBERON/86/UBERON_0001886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002407.md b/md/UBERON/07/UBERON_0002407.md index 856c0de0da..9ea4f64262 100644 --- a/md/UBERON/07/UBERON_0002407.md +++ b/md/UBERON/07/UBERON_0002407.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002407 * *Label* = pericardium - * *Definition* = The outer membrane/wall of the developing heart, surrounding the myocardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardium] + * *Definition* = The outer membrane/wall of the developing heart, surrounding the myocardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardium ] * *Comment* = We follow FMA in dividing pericardial sac in pericardium and pericardial cavity ## Synonyms @@ -28,7 +28,7 @@ * RETIRED_EHDAA2:0001443 * SCTID:181295003 * TAO:0000054 - * UMLS:C0031050 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pericardium] + * UMLS:C0031050 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pericardium ] * VHOG:0001280 * Wikipedia:Pericardium * XAO:0004182 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Peritoneum that surrounds the heart.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pericardial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002507.md b/md/UBERON/07/UBERON_0002507.md index 7fbac8d6ad..6c06196c47 100644 --- a/md/UBERON/07/UBERON_0002507.md +++ b/md/UBERON/07/UBERON_0002507.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002507 * *Label* = abdominal lymph node - * *Definition* = A lymph node that is part of an abdomen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymph node that is part of an abdomen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdomen lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lymph node of abdomen ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002607.md b/md/UBERON/07/UBERON_0002607.md index f7e42fa434..1eeb44471c 100644 --- a/md/UBERON/07/UBERON_0002607.md +++ b/md/UBERON/07/UBERON_0002607.md @@ -6,16 +6,16 @@ ## Synonyms - * sulcus rostralis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1143] - * sros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1143[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus rostralis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1143 ] + * sros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1143, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:sros * FMA:83766 * NIF_GrossAnatomy:birnlex_1143 - * NeuroNames:74 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1143] - * UMLS:C0694583 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1143] + * NeuroNames:74 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1143 ] + * UMLS:C0694583 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1143 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002707.md b/md/UBERON/07/UBERON_0002707.md index 7b0c957fbc..f4c8b32227 100644 --- a/md/UBERON/07/UBERON_0002707.md +++ b/md/UBERON/07/UBERON_0002707.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002707 * *Label* = pyramidal tract - * *Definition* = The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramidal_tract] + * *Definition* = The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramidal_tract ] ## Synonyms - * tractus corticospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corticospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Pyramidal tract, crossed [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:py] - * corticospinal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320] - * corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1464] - * corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320] - * fasciculus cerebro-spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:800[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae corticospinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyramid (Willis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:800] - * tractus cortico-spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus corticospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1320[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:800[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus corticospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corticospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Pyramidal tract, crossed [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:py ] + * corticospinal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320 ] + * corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1464 ] + * corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320 ] + * fasciculus cerebro-spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:800, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae corticospinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyramid (Willis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:800 ] + * tractus cortico-spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus corticospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1320, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:800, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,9 +30,9 @@ * GAID:702 * MESH:A08.186.854.633 * NIF_GrossAnatomy:birnlex_1464 - * NeuroNames:800 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1464] + * NeuroNames:800 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1464 ] * SCTID:362325000 - * UMLS:C0034229 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1464] + * UMLS:C0034229 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1464 ] * Wikipedia:Pyramidal_tracts * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png @@ -54,8 +54,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004095 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002807.md b/md/UBERON/07/UBERON_0002807.md index 81ef7f7ade..66c155e839 100644 --- a/md/UBERON/07/UBERON_0002807.md +++ b/md/UBERON/07/UBERON_0002807.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002807 * *Label* = right occipital lobe - * *Definition* = An occipital lobe that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An occipital lobe that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * NIF_GrossAnatomy:birnlex_1783 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA * SCTID:314149007 - * UMLS:C1281962 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1783] + * UMLS:C1281962 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1783 ] ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [occipital lobe](../../UBERON/21/UBERON_0002021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0002907.md b/md/UBERON/07/UBERON_0002907.md index ea27336b4c..588a6ca2cc 100644 --- a/md/UBERON/07/UBERON_0002907.md +++ b/md/UBERON/07/UBERON_0002907.md @@ -6,18 +6,18 @@ ## Synonyms - * postcentral dimple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83775] - * sulcus postcentralis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4025] - * spcs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4025[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * postcentral sulcus (Peele) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:100] + * postcentral dimple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83775 ] + * sulcus postcentralis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4025 ] + * spcs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4025, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * postcentral sulcus (Peele) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:100 ] ## Cross-references * BAMS:spcs * FMA:83775 * NIF_GrossAnatomy:birnlex_4025 - * NeuroNames:100 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4025] - * UMLS:C0262337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4025] + * NeuroNames:100 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4025 ] + * UMLS:C0262337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4025 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003007.md b/md/UBERON/07/UBERON_0003007.md index 51f7abf8e8..8a5bf236f2 100644 --- a/md/UBERON/07/UBERON_0003007.md +++ b/md/UBERON/07/UBERON_0003007.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003007 * *Label* = lateral parabrachial nucleus - * *Definition* = The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_parabrachial_nucleus] + * *Definition* = The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_parabrachial_nucleus ] ## Synonyms - * nucleus parabrachialis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:588[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parabrachial nucleus, lateral division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:588] + * nucleus parabrachialis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:588, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parabrachial nucleus, lateral division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:588 ] ## Cross-references * BAMS:LPB * FMA:72481 * NIF_GrossAnatomy:birnlex_897 - * NeuroNames:588 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_897] - * UMLS:C0175445 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_897] + * NeuroNames:588 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_897 ] + * UMLS:C0175445 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_897 ] * Wikipedia:Lateral_parabrachial_nucleus ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003107.md b/md/UBERON/07/UBERON_0003107.md index 2d86834d77..8af898866d 100644 --- a/md/UBERON/07/UBERON_0003107.md +++ b/md/UBERON/07/UBERON_0003107.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003107 * *Label* = Meckel's cartilage - * *Definition* = Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:3693112[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meckel's_cartilage] + * *Definition* = Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:3693112, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meckel's_cartilage ] * *Comment* = Taxon notes: functional lower jaw of Elasmobranchii and Holocephali, the embryonic lower jaw of other gnathostomous vertebrates[http://www.briancoad.com] ## Synonyms * Meckels cartilage - * cartilago arcus pharyngei primi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primary mandinle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com] - * ventral mandibular cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001205] + * cartilago arcus pharyngei primi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primary mandinle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com ] + * ventral mandibular cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001205 ] ## Cross-references @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch cartilage that is the cartilaginous embryonic component of the lower jaw, or ventral mandibular arch. It develops into the endochondral articular and retroarticular bones. Meckel's cartilage is paired.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all jawed vertebrates, including fish, the first pharyngeal arch generates the jaw apparatus. The neural crest cells of this arch migrate to form Meckel's cartilage, the precursor of the jaw.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003207.md b/md/UBERON/07/UBERON_0003207.md index aa213b34c7..779616109b 100644 --- a/md/UBERON/07/UBERON_0003207.md +++ b/md/UBERON/07/UBERON_0003207.md @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0010758 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003207 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/07/UBERON_0003307.md b/md/UBERON/07/UBERON_0003307.md index 393864e3ed..919c578b1f 100644 --- a/md/UBERON/07/UBERON_0003307.md +++ b/md/UBERON/07/UBERON_0003307.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003307 * *Label* = floor plate of midbrain - * *Definition* = A floor plate that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000780] - * floor plate midbrain region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001677] - * floorplate of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000780] - * floorplate midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000780] + * floor plate midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000780 ] + * floor plate midbrain region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001677 ] + * floorplate of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000780 ] + * floorplate midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000780 ] ## Cross-references @@ -32,15 +32,14 @@ ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [regional part of midbrain](../../UBERON/50/UBERON_0002950.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms @@ -52,8 +51,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass multi-tissue structure (CARO:0000055) CHANGED TO: part_of multi-tissue structure (UBERON:0000481)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003407.md b/md/UBERON/07/UBERON_0003407.md index 317b4327c5..9e12060a8a 100644 --- a/md/UBERON/07/UBERON_0003407.md +++ b/md/UBERON/07/UBERON_0003407.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003407 * *Label* = cartilage of nasal septum - * *Definition* = A cartilage that is part of a nasal septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage that is part of a nasal septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cartilago septal nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59503] - * nasal septum cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * septal nasal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59503] + * cartilago septal nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59503 ] + * nasal septum cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * septal nasal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59503 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasal septum](../../UBERON/06/UBERON_0001706.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003507.md b/md/UBERON/07/UBERON_0003507.md index 9bacf8edd5..e3a0c1cce2 100644 --- a/md/UBERON/07/UBERON_0003507.md +++ b/md/UBERON/07/UBERON_0003507.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003507 * *Label* = arm blood vessel - * *Definition* = A blood vessel that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003607.md b/md/UBERON/07/UBERON_0003607.md index 516ff83442..7ec9228ea9 100644 --- a/md/UBERON/07/UBERON_0003607.md +++ b/md/UBERON/07/UBERON_0003607.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003607 * *Label* = forelimb long bone - * *Definition* = A long bone that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A long bone that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long bone](../../UBERON/95/UBERON_0002495.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003707.md b/md/UBERON/07/UBERON_0003707.md index db07797b7e..8eb42522cb 100644 --- a/md/UBERON/07/UBERON_0003707.md +++ b/md/UBERON/07/UBERON_0003707.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003707 * *Label* = sinus of Valsalva - * *Definition* = one of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] + * *Definition* = one of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] ## Synonyms - * Petit's sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] - * Valsalva sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:472] - * aortic sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:472] - * sinus aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] - * sinus aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sinus aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] - * sinus of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] - * sinus of Otto [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_sinus] + * Petit's sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] + * Valsalva sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:472 ] + * aortic sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:472 ] + * sinus aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] + * sinus aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] + * sinus aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sinus of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] + * sinus of Otto [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_sinus ] ## Cross-references @@ -23,7 +23,7 @@ * GAID:472 * MESH:A07.231.114.056.847 * SCTID:277732004 - * UMLS:C0503361 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sinus_of_Valsava] + * UMLS:C0503361 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sinus_of_Valsava ] * Wikipedia:Aortic_sinus * http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png * ncithesaurus:Sinus_of_Valsava @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0003907.md b/md/UBERON/07/UBERON_0003907.md index 1a3b216c63..fe515a326c 100644 --- a/md/UBERON/07/UBERON_0003907.md +++ b/md/UBERON/07/UBERON_0003907.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003907 * *Label* = left atrioventricular canal - * *Definition* = An atrioventricular canal that is in the left side of a atrioventricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An atrioventricular canal that is in the left side of a atrioventricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: EHDAA2 represents lumen ## Synonyms * left AVC - * left atrio-ventricular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000935] + * left atrio-ventricular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000935 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrioventricular canal](../../UBERON/87/UBERON_0002087.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [atrioventricular region](../../UBERON/20/UBERON_0011820.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004207.md b/md/UBERON/07/UBERON_0004207.md index aba4ed8987..e428bc6408 100644 --- a/md/UBERON/07/UBERON_0004207.md +++ b/md/UBERON/07/UBERON_0004207.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004207 * *Label* = prebend segment - * *Definition* = The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072066] + * *Definition* = The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072066 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004407.md b/md/UBERON/07/UBERON_0004407.md index 280c55e968..ab784894cb 100644 --- a/md/UBERON/07/UBERON_0004407.md +++ b/md/UBERON/07/UBERON_0004407.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004407 * *Label* = distal epiphysis of radius - * *Definition* = A distal epiphysis that is part of a radius [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a radius [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33776] - * lower end of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33776] + * distal end of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33776 ] + * lower end of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33776 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004507.md b/md/UBERON/07/UBERON_0004507.md index cd2767165a..741ecec18b 100644 --- a/md/UBERON/07/UBERON_0004507.md +++ b/md/UBERON/07/UBERON_0004507.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004507 * *Label* = skeletal muscle tissue of temporalis - * *Definition* = A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [temporalis muscle](../../UBERON/98/UBERON_0001598.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004607.md b/md/UBERON/07/UBERON_0004607.md index e645651a43..c857869098 100644 --- a/md/UBERON/07/UBERON_0004607.md +++ b/md/UBERON/07/UBERON_0004607.md @@ -7,14 +7,15 @@ ## Synonyms - * seventh rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7830] + * costa VII [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * seventh rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7830 ] ## Cross-references * FMA:7830 * MA:0001407 * SCTID:244662002 - * UMLS:C1709953 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_7] + * UMLS:C1709953 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_7 ] * ncithesaurus:Rib_7 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004707.md b/md/UBERON/07/UBERON_0004707.md index bac78c02fc..576856c701 100644 --- a/md/UBERON/07/UBERON_0004707.md +++ b/md/UBERON/07/UBERON_0004707.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004707 * *Label* = pharyngula stage - * *Definition* = A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngula] + * *Definition* = A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngula ] * *Comment* = Corresponds to E7-E11 in Mouse (Galis et al, TREE, 2001) ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004807.md b/md/UBERON/07/UBERON_0004807.md index 6a9a38efe5..a53a1eaea4 100644 --- a/md/UBERON/07/UBERON_0004807.md +++ b/md/UBERON/07/UBERON_0004807.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004807 * *Label* = respiratory system epithelium - * *Definition* = An epithelium that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0004907.md b/md/UBERON/07/UBERON_0004907.md index aef0c8358f..c017c5a935 100644 --- a/md/UBERON/07/UBERON_0004907.md +++ b/md/UBERON/07/UBERON_0004907.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004907 * *Label* = lower digestive tract - * *Definition* = the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] + * *Definition* = the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract ] * *Comment* = WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L ## Synonyms * lower GI tract * lower gastrointestinal tract - * gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048565] + * gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048565 ] ## Cross-references * FMA:49179 * MA:0000917 * SCTID:279973004 - * UMLS:C0226875 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Gastrointestinal_Tract] + * UMLS:C0226875 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Gastrointestinal_Tract ] * Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract * galen:LowerGastrointestinalTract * ncithesaurus:Lower_Gastrointestinal_Tract @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005007.md b/md/UBERON/07/UBERON_0005007.md index 58b98515d9..44b84af92e 100644 --- a/md/UBERON/07/UBERON_0005007.md +++ b/md/UBERON/07/UBERON_0005007.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005007 * *Label* = mucosa of major calyx - * *Definition* = A mucosa that is part of a major calyx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a major calyx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * major calix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calyx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calyx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calyx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * major calyx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of major calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of major calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of major calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of major calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of major calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of major calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of major calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * major calix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calyx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calyx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calyx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * major calyx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of major calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of major calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of major calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of major calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of major calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of major calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of major calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [major calyx](../../UBERON/26/UBERON_0001226.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005107.md b/md/UBERON/07/UBERON_0005107.md index b251ac9a26..e983bf4d09 100644 --- a/md/UBERON/07/UBERON_0005107.md +++ b/md/UBERON/07/UBERON_0005107.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005107 * *Label* = metanephric cap - * *Definition* = The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072185[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] + * *Definition* = The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072185, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] * *Comment* = TODO - check EMAPA ## Synonyms - * cap mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:27621] + * cap mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:27621 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005207.md b/md/UBERON/07/UBERON_0005207.md index 5f43ce5e3c..0a4b2f8238 100644 --- a/md/UBERON/07/UBERON_0005207.md +++ b/md/UBERON/07/UBERON_0005207.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005207 * *Label* = tonsil capsule - * *Definition* = A capsule that is part of a tonsil [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capsule that is part of a tonsil [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tonsil](../../UBERON/72/UBERON_0002372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005307.md b/md/UBERON/07/UBERON_0005307.md index f983de491e..e8b40ee1ec 100644 --- a/md/UBERON/07/UBERON_0005307.md +++ b/md/UBERON/07/UBERON_0005307.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005307 * *Label* = chorion-containing eggshell - * *Definition* = An eggshell that contains chorion. An example of this is found in Drosophila melanogaster. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007304] + * *Definition* = An eggshell that contains chorion. An example of this is found in Drosophila melanogaster. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007304 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005407.md b/md/UBERON/07/UBERON_0005407.md index e2ac307a43..f95b17f00d 100644 --- a/md/UBERON/07/UBERON_0005407.md +++ b/md/UBERON/07/UBERON_0005407.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005407 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005507.md b/md/UBERON/07/UBERON_0005507.md index 29f6d09214..bbb3affe70 100644 --- a/md/UBERON/07/UBERON_0005507.md +++ b/md/UBERON/07/UBERON_0005507.md @@ -6,7 +6,7 @@ ## Synonyms - * r3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000948] + * r3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000948 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005607.md b/md/UBERON/07/UBERON_0005607.md index f645a05154..96188507b7 100644 --- a/md/UBERON/07/UBERON_0005607.md +++ b/md/UBERON/07/UBERON_0005607.md @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005707.md b/md/UBERON/07/UBERON_0005707.md index a0fab77553..7a69d10210 100644 --- a/md/UBERON/07/UBERON_0005707.md +++ b/md/UBERON/07/UBERON_0005707.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005707 * *Label* = upper jaw incisor odontogenic papilla - * *Definition* = An odontogenic papilla that is part of a upper jaw incisor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a upper jaw incisor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * upper incisor mesenchyme - * upper jaw incisor dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002123] + * upper jaw incisor dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002123 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw incisor](../../UBERON/50/UBERON_0003450.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0005807.md b/md/UBERON/07/UBERON_0005807.md index 39e962c4be..53b438779e 100644 --- a/md/UBERON/07/UBERON_0005807.md +++ b/md/UBERON/07/UBERON_0005807.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005807 * *Label* = rostral ventrolateral medulla - * *Definition* = Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_ventrolateral_medulla] + * *Definition* = Control of blood pressure is crucially dependent on the integrity of a small region of the brainstem called the ventrolateral medulla. Within this part of the brain are the cells that control the heart, blood vessels, swallowing, breathing and many other functions of the body that are not noticed at a conscious level; such unconscious activities are known as 'Autonomic'. One of these regions is the Rostral Ventrolateral Medulla (RVLM) is also known as the pressor area of the medulla (medulla pressor). It receives inhibitory GABAergic input from the caudal ventrolateral medulla (CVLM). The RVLM is the primary regulator of the sympathetic nervous system, sending excitatory fibers (catecholaminergic) to the sympathetic preganglionic neurons in the spinal cord, via reticulospinal tract[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_ventrolateral_medulla ] ## Synonyms * RVLM - * medulla pressor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_ventrolateral_medulla] + * medulla pressor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_ventrolateral_medulla ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006007.md b/md/UBERON/07/UBERON_0006007.md index f2c7ce0856..1963ebf02a 100644 --- a/md/UBERON/07/UBERON_0006007.md +++ b/md/UBERON/07/UBERON_0006007.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006007 * *Label* = pre-Botzinger complex - * *Definition* = the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]. The Pre-Btzinger Complex (preBtC) is a cluster of interneurons in the ventrolateral medulla of the brainstem, which is essential to the generation of respiratory rhythm in mammals[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010745[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pre-botzinger_complex] + * *Definition* = the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]. The Pre-Btzinger Complex (preBtC) is a cluster of interneurons in the ventrolateral medulla of the brainstem, which is essential to the generation of respiratory rhythm in mammals[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010745, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pre-botzinger_complex ] * *Comment* = the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here. ## Synonyms - * Pre-Btzinger Complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pre-botzinger_complex] - * preBtC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pre-botzinger_complex] - * pre-botzinger respiratory control center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002577] + * Pre-Btzinger Complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pre-botzinger_complex ] + * preBtC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pre-botzinger_complex ] + * pre-botzinger respiratory control center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002577 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006107.md b/md/UBERON/07/UBERON_0006107.md index 0cd20cd100..3085277b4a 100644 --- a/md/UBERON/07/UBERON_0006107.md +++ b/md/UBERON/07/UBERON_0006107.md @@ -6,21 +6,21 @@ ## Synonyms - * BL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * Basolateral nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * amygdalar basolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * amygdaloid basolateral complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84016] - * amygdaloid basolateral complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * basolateral amygdaloid nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * basolateral nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84016] - * basolateral nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * basolateral nuclei of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84016] - * pars basolateralis (Corpus amygdaloideum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * vicarious cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84016] - * vicarious cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2679] - * basolateral amygdaloid nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLA] - * basolateral amygdaloid nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLA] - * set of basolateral nuclei of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84016] + * BL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * Basolateral nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * amygdalar basolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * amygdaloid basolateral complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84016 ] + * amygdaloid basolateral complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * basolateral amygdaloid nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * basolateral nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84016 ] + * basolateral nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * basolateral nuclei of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84016 ] + * pars basolateralis (Corpus amygdaloideum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * vicarious cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84016 ] + * vicarious cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2679 ] + * basolateral amygdaloid nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLA ] + * basolateral amygdaloid nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLA ] + * set of basolateral nuclei of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84016 ] ## Cross-references @@ -28,8 +28,8 @@ * BAMS:BLA * FMA:84016 * NIF_GrossAnatomy:birnlex_2679 - * NeuroNames:244 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2679] - * UMLS:C0175220 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2679] + * NeuroNames:244 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2679 ] + * UMLS:C0175220 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2679 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006207.md b/md/UBERON/07/UBERON_0006207.md index adf69798ad..4a6816515d 100644 --- a/md/UBERON/07/UBERON_0006207.md +++ b/md/UBERON/07/UBERON_0006207.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006207 * *Label* = aortico-pulmonary spiral septum - * *Definition* = the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta[MP]. The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010650[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum] + * *Definition* = the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta[MP]. The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010650, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum ] ## Synonyms - * aortico-pulmonary septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum] - * aorticopulmonary septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum] - * septum aorticopulmonale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aortic septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum] - * spiral septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorticopulmonary_septum] + * aortico-pulmonary septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum ] + * aorticopulmonary septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum ] + * septum aorticopulmonale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aortic septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum ] + * spiral septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorticopulmonary_septum ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [dorsal aorta](../../UBERON/05/UBERON_0005805.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pulmonary trunk](../../UBERON/33/UBERON_0002333.md) and [cardiac septum](../../UBERON/99/UBERON_0002099.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005999 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006307.md b/md/UBERON/07/UBERON_0006307.md index 40232d3760..ddbbe7ae9f 100644 --- a/md/UBERON/07/UBERON_0006307.md +++ b/md/UBERON/07/UBERON_0006307.md @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ventral part of the cloacal membrane separating the gut from the fetus external environment. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006607.md b/md/UBERON/07/UBERON_0006607.md index f6558180e3..a50172e032 100644 --- a/md/UBERON/07/UBERON_0006607.md +++ b/md/UBERON/07/UBERON_0006607.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006607 * *Label* = medial umbilical ligament - * *Definition* = The medial umbilical ligament is a paired structure found in human anatomy. It is on the deep surface of the anterior abdominal wall, and is covered by the medial umbilical folds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament] + * *Definition* = The medial umbilical ligament is a paired structure found in human anatomy. It is on the deep surface of the anterior abdominal wall, and is covered by the medial umbilical folds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament ] ## Synonyms - * ligamentum umbilicale mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14077] - * chorda arteria umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cord of umbilical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament] - * ligamentum umbilicale mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial umbilical fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament] - * medial umbilical ligaments [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_umbilical_ligament] + * ligamentum umbilicale mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14077 ] + * chorda arteria umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cord of umbilical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament ] + * ligamentum umbilicale mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial umbilical fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament ] + * medial umbilical ligaments [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_umbilical_ligament ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006807.md b/md/UBERON/07/UBERON_0006807.md index 09550e253d..6a220f9239 100644 --- a/md/UBERON/07/UBERON_0006807.md +++ b/md/UBERON/07/UBERON_0006807.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006807 * *Label* = ectepicondyle of humerus - * *Definition* = A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15064415[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryE.html] + * *Definition* = A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15064415, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryE.html ] ## Synonyms - * epicondylus lateralis (humerus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23442] - * ectepicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15064415] - * lateral epicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000758] - * dorsal epicondyle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_humerus] - * dorsal epicondyle of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * e. lateralis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * epicondylus lateralis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000758] - * lateral epicondyle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23442[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * epicondylus lateralis (humerus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23442 ] + * ectepicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15064415 ] + * lateral epicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000758 ] + * dorsal epicondyle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_humerus ] + * dorsal epicondyle of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * e. lateralis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * epicondylus lateralis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000758 ] + * lateral epicondyle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23442, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0006907.md b/md/UBERON/07/UBERON_0006907.md index c2bd65ecf8..bc593834f2 100644 --- a/md/UBERON/07/UBERON_0006907.md +++ b/md/UBERON/07/UBERON_0006907.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006907 * *Label* = slow muscle tissue - * *Definition* = The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002317] + * *Definition* = The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002317 ] * *Comment* = Notes: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992). AO notes: check if CALOHA term is for fiber or tissue. Editor notes: check if relationship to cell types should be more specific type I cells ## Synonyms - * slow muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002317] + * slow muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002317 ] * slow skeletal muscle tissue - * slow-twitch skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0940] - * red muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002317] + * slow-twitch skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0940 ] + * red muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002317 ] ## Cross-references * BTO:0002317 * CALOHA:TS-0940 - * UMLS:C0242874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_Fibers_Slow-Twitch] + * UMLS:C0242874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_Fibers_Slow-Twitch ] * ncithesaurus:Muscle_Fibers_Slow-Twitch ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [slow muscle cell](../../CL/89/CL_0000189.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0007307.md b/md/UBERON/07/UBERON_0007307.md index f7baae6372..5f46cce425 100644 --- a/md/UBERON/07/UBERON_0007307.md +++ b/md/UBERON/07/UBERON_0007307.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007307 * *Label* = pronephric glomerular basement membrane - * *Definition* = A glomerular basement membrane that is part of a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A glomerular basement membrane that is part of a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular basement membrane](../../UBERON/77/UBERON_0005777.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0007707.md b/md/UBERON/07/UBERON_0007707.md index 9a18879043..149317f7f0 100644 --- a/md/UBERON/07/UBERON_0007707.md +++ b/md/UBERON/07/UBERON_0007707.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007707 * *Label* = superior cerebellar peduncle of midbrain - * *Definition* = Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1162] + * *Definition* = Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1162 ] ## Synonyms - * SCPMB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1162] - * superior cerebellar peduncle of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1162] - * scpmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1162[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * pedunculus cerebellaris superior (mesencephalon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:820[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior cerebellar peduncle of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:820] + * SCPMB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1162 ] + * superior cerebellar peduncle of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1162 ] + * scpmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1162, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * pedunculus cerebellaris superior (mesencephalon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:820, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior cerebellar peduncle of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:820 ] ## Cross-references * BAMS:scpmb * NIF_GrossAnatomy:birnlex_1162 - * NeuroNames:820 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1162] + * NeuroNames:820 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1162 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0007807.md b/md/UBERON/07/UBERON_0007807.md index 62c942f456..ed2548333e 100644 --- a/md/UBERON/07/UBERON_0007807.md +++ b/md/UBERON/07/UBERON_0007807.md @@ -6,7 +6,7 @@ ## Synonyms - * connecting stalk blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000313[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * connecting stalk blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000313, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0008307.md b/md/UBERON/07/UBERON_0008307.md index 233f9b57cc..8cce6166dd 100644 --- a/md/UBERON/07/UBERON_0008307.md +++ b/md/UBERON/07/UBERON_0008307.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008307 * *Label* = heart endothelium - * *Definition* = An endothelium that is part of a heart [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a heart [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class includes any endothelia that are part of the heart. This might include the endocardial epithelia, as well as endothelia of vessels that are considered strictly part of the heart (e.g. outflow tract). As a grouping class, this may lack utility, and pending review this class may be obsoleted. For annotation consider a more specific class. ## Synonyms - * cardiac endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004293] + * cardiac endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004293 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0008607.md b/md/UBERON/07/UBERON_0008607.md index 8d0dc33d5d..08e044ac3e 100644 --- a/md/UBERON/07/UBERON_0008607.md +++ b/md/UBERON/07/UBERON_0008607.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008607 * *Label* = transverse muscle of auricle - * *Definition* = The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_auricle] + * *Definition* = The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_auricle ] ## Synonyms - * transverse muscle of pinna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48983] - * transversus auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_auricle] - * transversus auricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48983] - * musculus transversus auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_auricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * transverse muscle of pinna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48983 ] + * transversus auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_auricle ] + * transversus auricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48983 ] + * musculus transversus auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_auricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0008807.md b/md/UBERON/07/UBERON_0008807.md index 684bc45a8b..8b6e5ebf83 100644 --- a/md/UBERON/07/UBERON_0008807.md +++ b/md/UBERON/07/UBERON_0008807.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008807 * *Label* = coagulating gland - * *Definition* = The anterior lobe of the prostate gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Coagulating_Gland] + * *Definition* = The anterior lobe of the prostate gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Coagulating_Gland ] ## Synonyms - * anterior prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29794] - * prostate gland anterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000402] + * anterior prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29794 ] + * prostate gland anterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000402 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0008907.md b/md/UBERON/07/UBERON_0008907.md index d42f6841ac..f4913336e0 100644 --- a/md/UBERON/07/UBERON_0008907.md +++ b/md/UBERON/07/UBERON_0008907.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008907 * *Label* = dermal bone - * *Definition* = Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000130[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000130, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Note that other AOs are not yet in sync with this classification ## Synonyms @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dermal skeleton](../../UBERON/64/UBERON_0010364.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Intramembranous bone that forms superficially in the organism.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0009007.md b/md/UBERON/07/UBERON_0009007.md index 409826a758..3f073a83e3 100644 --- a/md/UBERON/07/UBERON_0009007.md +++ b/md/UBERON/07/UBERON_0009007.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009007 * *Label* = superficial inguinal lymph node - * *Definition* = A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004549] + * *Definition* = A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004549 ] ## Synonyms - * lymph node of Cloquet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5036] - * lymph node of Rosenmuller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5036] - * nodus lymphaticus inguinalis superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5036[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superficial inguinal node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5036] - * nodi lymphatici inguinales superficiali [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lymph node of Cloquet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5036 ] + * lymph node of Rosenmuller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5036 ] + * nodus lymphaticus inguinalis superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5036, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superficial inguinal node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5036 ] + * nodi lymphatici inguinales superficiali [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0009207.md b/md/UBERON/07/UBERON_0009207.md index 306d4d9130..3fd072d8fd 100644 --- a/md/UBERON/07/UBERON_0009207.md +++ b/md/UBERON/07/UBERON_0009207.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009207 * *Label* = geschmacksstreifen - * *Definition* = Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19295142] + * *Definition* = Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19295142 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0009907.md b/md/UBERON/07/UBERON_0009907.md index 4f0952fff9..df6c357289 100644 --- a/md/UBERON/07/UBERON_0009907.md +++ b/md/UBERON/07/UBERON_0009907.md @@ -6,10 +6,10 @@ ## Synonyms - * radix sensoria (nervus trigeminus [v]) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52611] - * Sensory root of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sV] - * sensory root of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:s5] - * sensory root of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sV] + * radix sensoria (nervus trigeminus [v]) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52611 ] + * Sensory root of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sV ] + * sensory root of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:s5 ] + * sensory root of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sV ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010007.md b/md/UBERON/07/UBERON_0010007.md index 79e791a9ce..37d9b15e3f 100644 --- a/md/UBERON/07/UBERON_0010007.md +++ b/md/UBERON/07/UBERON_0010007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010007 * *Label* = placenta fetal blood space - * *Definition* = the spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011526] + * *Definition* = the spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011526 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010207.md b/md/UBERON/07/UBERON_0010207.md index 68358d8909..30e157ee33 100644 --- a/md/UBERON/07/UBERON_0010207.md +++ b/md/UBERON/07/UBERON_0010207.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010207 * *Label* = nictitating membrane - * *Definition* = A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.660[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nictitating_membrane] + * *Definition* = A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.660, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nictitating_membrane ] * *Comment* = Taxon notes: Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes[WP]. Editor notes: We exclude the shark structure for this via a taxon constraint. ## Synonyms - * nictitans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/Amniota] - * third eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.660] + * nictitans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/Amniota ] + * third eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.660 ] ## Cross-references * MESH:A13.660 * SCTID:113326005 - * UMLS:C0028058 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nictitating_Membrane] + * UMLS:C0028058 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nictitating_Membrane ] * Wikipedia:Nictitating_membrane * http://en.wikipedia.org/wiki/File:Chickenblinking.jpg * ncithesaurus:Nictitating_Membrane @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010307.md b/md/UBERON/07/UBERON_0010307.md index 13ef22aae8..ad4c168fe1 100644 --- a/md/UBERON/07/UBERON_0010307.md +++ b/md/UBERON/07/UBERON_0010307.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010307 * *Label* = conjunctival fornix - * *Definition* = line of reflexion of the conjunctiva from the eyelid to the eyeball. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/conjunctival+fornix] + * *Definition* = line of reflexion of the conjunctiva from the eyelid to the eyeball. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/conjunctival+fornix ] * *Comment* = Forms the junction between the bulbar and palpebral conjunctivas. It is loose and flexible, allowing the free movement of the lids and eyeball ## Synonyms - * fornix conjunctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conjunctiva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fornix conjunctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conjunctiva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010507.md b/md/UBERON/07/UBERON_0010507.md index bf01c27ed2..3202c6a846 100644 --- a/md/UBERON/07/UBERON_0010507.md +++ b/md/UBERON/07/UBERON_0010507.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010507 * *Label* = layer of dura mater - * *Definition* = The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] + * *Definition* = The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater ] * *Comment* = Editors note: not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010707.md b/md/UBERON/07/UBERON_0010707.md index 483862b21c..b1ec5f865b 100644 --- a/md/UBERON/07/UBERON_0010707.md +++ b/md/UBERON/07/UBERON_0010707.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010707 * *Label* = appendage girdle complex - * *Definition* = An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region) ## Synonyms - * appendage complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * appendage-girdle complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * appendage/girdle complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000214] - * girdle plus limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7182[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * appendage complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * appendage-girdle complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * appendage/girdle complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000214 ] + * girdle plus limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7182, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-23T10:46:51Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0010907.md b/md/UBERON/07/UBERON_0010907.md index acb2bd0165..626978e30f 100644 --- a/md/UBERON/07/UBERON_0010907.md +++ b/md/UBERON/07/UBERON_0010907.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010907 * *Label* = parafibula - * *Definition* = third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryP.html#P] + * *Definition* = third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryP.html#P ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011007.md b/md/UBERON/07/UBERON_0011007.md index 572d654791..fc4636b148 100644 --- a/md/UBERON/07/UBERON_0011007.md +++ b/md/UBERON/07/UBERON_0011007.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011007 * *Label* = endocardium of right auricle - * *Definition* = An endocardium that is part of a right atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocardium that is part of a right atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right auricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13235] + * right auricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13235 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right atrium auricular region](../../UBERON/31/UBERON_0006631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011107.md b/md/UBERON/07/UBERON_0011107.md index af074cb7dd..6f48950596 100644 --- a/md/UBERON/07/UBERON_0011107.md +++ b/md/UBERON/07/UBERON_0011107.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011107 * *Label* = synovial joint of pelvic girdle - * *Definition* = A synovial joint that is part of a pelvic girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A synovial joint that is part of a pelvic girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * joint of pelvic girdle - * pelvic girdle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35173] + * pelvic girdle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35173 ] ## Cross-references * FMA:35173 - * UMLS:C0827002 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Joint_of_the_Pelvic_Girdle] + * UMLS:C0827002 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Joint_of_the_Pelvic_Girdle ] * ncithesaurus:Joint_of_the_Pelvic_Girdle ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) and [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011207.md b/md/UBERON/07/UBERON_0011207.md index 7c182c370b..4f43ffe693 100644 --- a/md/UBERON/07/UBERON_0011207.md +++ b/md/UBERON/07/UBERON_0011207.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011207 * *Label* = iliocostalis lumborum - * *Definition* = The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis#Iliocostalis_lumborum] + * *Definition* = The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis#Iliocostalis_lumborum ] ## Synonyms - * sacrolumbalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] - * sacrolumbalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] + * sacrolumbalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] + * sacrolumbalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011307.md b/md/UBERON/07/UBERON_0011307.md index bca301b3af..c99489c528 100644 --- a/md/UBERON/07/UBERON_0011307.md +++ b/md/UBERON/07/UBERON_0011307.md @@ -6,7 +6,7 @@ ## Synonyms - * temporalis, suprazygomatic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * temporalis, suprazygomatic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011607.md b/md/UBERON/07/UBERON_0011607.md index 8ec8aa45ac..53ce5c9dc0 100644 --- a/md/UBERON/07/UBERON_0011607.md +++ b/md/UBERON/07/UBERON_0011607.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011607 * *Label* = hyomandibular cartilage - * *Definition* = Cartilage form of the hyomandibular element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Cartilage form of the hyomandibular element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. ## Synonyms - * hyosymplectic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001422] - * symplectic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001422] + * hyosymplectic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001422 ] + * symplectic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001422 ] ## Cross-references @@ -26,9 +26,11 @@ * [pharyngeal arch cartilage](../../UBERON/04/UBERON_0011004.md) * [hyomandibular element](../../UBERON/08/UBERON_0011608.md) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Equivalencies + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [hyomandibular element](../../UBERON/08/UBERON_0011608.md) ## Other Logical Axioms @@ -38,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011807.md b/md/UBERON/07/UBERON_0011807.md index 490593adb6..78a38fe2ef 100644 --- a/md/UBERON/07/UBERON_0011807.md +++ b/md/UBERON/07/UBERON_0011807.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011807 * *Label* = epidermis of feather follicle - * *Definition* = A tissue that is part of a epidermis and is part of a feather follicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tissue that is part of a epidermis and is part of a feather follicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epidermis](../../UBERON/03/UBERON_0001003.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather follicle](../../UBERON/82/UBERON_0011782.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011807 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0011907.md b/md/UBERON/07/UBERON_0011907.md index 28a36d4cef..708b659af0 100644 --- a/md/UBERON/07/UBERON_0011907.md +++ b/md/UBERON/07/UBERON_0011907.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011907 * *Label* = gastrocnemius medialis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Mammalian gastrocnemius medialis and flexor hallucis longus arise from reptilian gastrocnemius internus[Kardong] ## Synonyms - * caput mediale (musculus gastrocnemius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45956] - * medial head of gastrocnemius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45956] + * caput mediale (musculus gastrocnemius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45956 ] + * medial head of gastrocnemius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45956 ] * medial head of gastrocnemius muscle ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0012307.md b/md/UBERON/07/UBERON_0012307.md index 18f15f97cf..ade64c434e 100644 --- a/md/UBERON/07/UBERON_0012307.md +++ b/md/UBERON/07/UBERON_0012307.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012307 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0013207.md b/md/UBERON/07/UBERON_0013207.md index 89c8696511..0de0bbcdf2 100644 --- a/md/UBERON/07/UBERON_0013207.md +++ b/md/UBERON/07/UBERON_0013207.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013207 * *Label* = entepicondylar foramen - * *Definition* = The entepicondylar foramen is an opening in the distal (far) end of the humerus (upper arm bone) present in some mammals. It is often present in primitive placentals, such as the enigmatic Madagascan Plesiorycteropus. In most Neotominae and all Tylomyinae among cricetid rodents, it is located above the medial epicondyle of the humerus, but it is absent in all Sigmodontinae and Arvicolinae and this trait has been suggested as a synapomorphy for the former subfamily. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Entepicondylar_foramen] + * *Definition* = The entepicondylar foramen is an opening in the distal (far) end of the humerus (upper arm bone) present in some mammals. It is often present in primitive placentals, such as the enigmatic Madagascan Plesiorycteropus. In most Neotominae and all Tylomyinae among cricetid rodents, it is located above the medial epicondyle of the humerus, but it is absent in all Sigmodontinae and Arvicolinae and this trait has been suggested as a synapomorphy for the former subfamily. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Entepicondylar_foramen ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013207 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0013507.md b/md/UBERON/07/UBERON_0013507.md index 4bcc3ba271..d13cc842df 100644 --- a/md/UBERON/07/UBERON_0013507.md +++ b/md/UBERON/07/UBERON_0013507.md @@ -6,7 +6,7 @@ ## Synonyms - * thoracic vertebral cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002014] + * thoracic vertebral cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002014 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0013607.md b/md/UBERON/07/UBERON_0013607.md index 001e8cb74b..d6009e03b7 100644 --- a/md/UBERON/07/UBERON_0013607.md +++ b/md/UBERON/07/UBERON_0013607.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [parvocellular neurosecretory cell](../../CL/05/CL_1001505.md) and [layer of lateral geniculate body](../../UBERON/05/UBERON_0013605.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0013707.md b/md/UBERON/07/UBERON_0013707.md index c318d74f5a..d946189f37 100644 --- a/md/UBERON/07/UBERON_0013707.md +++ b/md/UBERON/07/UBERON_0013707.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone spine](../../UBERON/06/UBERON_0013706.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ilium](../../UBERON/73/UBERON_0001273.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0014507.md b/md/UBERON/07/UBERON_0014507.md index 62855a74bd..72e6f3ad60 100644 --- a/md/UBERON/07/UBERON_0014507.md +++ b/md/UBERON/07/UBERON_0014507.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014507 * *Label* = distal interphalangeal joint of pedal digit 3 - * *Definition* = A distal inter-phalangeal joint that is part of the 3rd pedal digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal inter-phalangeal joint that is part of the 3rd pedal digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * distal interphalangeal joint of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35375] - * distal interphalangeal joint of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35375] - * equine distal interphalangeal joint of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * hindlimb coffin joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * distal interphalangeal joint of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35375 ] + * distal interphalangeal joint of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35375 ] + * equine distal interphalangeal joint of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * hindlimb coffin joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014507 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0014607.md b/md/UBERON/07/UBERON_0014607.md index 3b93316d6e..d39feadc37 100644 --- a/md/UBERON/07/UBERON_0014607.md +++ b/md/UBERON/07/UBERON_0014607.md @@ -6,15 +6,15 @@ ## Synonyms - * thoracic spinal cord lateral horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1397[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * thoracic spinal cord intermediate horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1397] + * thoracic spinal cord lateral horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1397, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * thoracic spinal cord intermediate horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1397 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1397 * SCTID:367875001 - * UMLS:C0228631 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1397] - * UMLS:C1288551 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1397] + * UMLS:C0228631 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1397 ] + * UMLS:C1288551 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1397 ] ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [spinal cord lateral horn](../../UBERON/76/UBERON_0004676.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014607 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0014707.md b/md/UBERON/07/UBERON_0014707.md index a05a40b776..e58c44cb82 100644 --- a/md/UBERON/07/UBERON_0014707.md +++ b/md/UBERON/07/UBERON_0014707.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014707 * *Label* = hyoplastron - * *Definition* = A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A paired plastron element that is in the anterior part of the plastron, anterior to the hypoplastron, posterior to the epiplastron and adjacent to the median entoplastron. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014707 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0014907.md b/md/UBERON/07/UBERON_0014907.md index d6833cbbb8..be526ac6ee 100644 --- a/md/UBERON/07/UBERON_0014907.md +++ b/md/UBERON/07/UBERON_0014907.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014907 * *Label* = intersomitic vessel - * *Definition* = One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] + * *Definition* = One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Synonyms - * intersegmental vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001285] - * intersegmental vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * intersomitic vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * segmental vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001285] + * intersegmental vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001285 ] + * intersegmental vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * intersomitic vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * segmental vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001285 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Blood vessels that connect the dorsal aorta or the posterior cardinal vein and the dorsal longitudinal anastomotic vessel. They run along the vertical myotomal boundaries. At early stages these don't have venous or arterial markers[ZFA:0001285, ZFIN:ZDB-PUB-030908-4]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014907 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0015007.md b/md/UBERON/07/UBERON_0015007.md index ec271b9d39..70edeb5d9e 100644 --- a/md/UBERON/07/UBERON_0015007.md +++ b/md/UBERON/07/UBERON_0015007.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015007 * *Label* = cervical vertebra endochondral element - * *Definition* = A cervical vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A cervical vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * cervical vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * cervical vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * cervical vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * cervical vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [cervical vertebra cartilage element](../../UBERON/05/UBERON_0013505.md)or[cervical vertebra pre-cartilage condensation](../../UBERON/06/UBERON_0013506.md)or[cervical vertebra](../../UBERON/13/UBERON_0002413.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_0015107.md b/md/UBERON/07/UBERON_0015107.md index 22d20182cd..b5db6e81a8 100644 --- a/md/UBERON/07/UBERON_0015107.md +++ b/md/UBERON/07/UBERON_0015107.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone 2 endochondral element](../../UBERON/05/UBERON_0015105.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015107 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_1000007.md b/md/UBERON/07/UBERON_1000007.md index b96262d452..132b011fe1 100644 --- a/md/UBERON/07/UBERON_1000007.md +++ b/md/UBERON/07/UBERON_1000007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000007 * *Label* = forehead protuberance - * *Definition* = A bulge, knob, or swelling that protrudes from the forehead. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A bulge, knob, or swelling that protrudes from the forehead. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000007 + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_1500007.md b/md/UBERON/07/UBERON_1500007.md index bdac7a87bf..ea5664fa6a 100644 --- a/md/UBERON/07/UBERON_1500007.md +++ b/md/UBERON/07/UBERON_1500007.md @@ -4,7 +4,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1500007 * *Label* = mesopterygium * *Definition* = The median, elongated basal cartilage of the pectoral fin. - * *Comment* = Relevant for Elasmobranchii, Holocephali and primitive Teleostomi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/DicPics/mesopterygium.htm] + * *Comment* = Relevant for Elasmobranchii, Holocephali and primitive Teleostomi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/DicPics/mesopterygium.htm ] ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2000307.md b/md/UBERON/07/UBERON_2000307.md index 5d0466befe..574ccd110b 100644 --- a/md/UBERON/07/UBERON_2000307.md +++ b/md/UBERON/07/UBERON_2000307.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2000507.md b/md/UBERON/07/UBERON_2000507.md index d06ba127c8..645853458a 100644 --- a/md/UBERON/07/UBERON_2000507.md +++ b/md/UBERON/07/UBERON_2000507.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000507 * *Label* = epineural - * *Definition* = Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2000607.md b/md/UBERON/07/UBERON_2000607.md index 63aee1b509..431c3ba64d 100644 --- a/md/UBERON/07/UBERON_2000607.md +++ b/md/UBERON/07/UBERON_2000607.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2000707.md b/md/UBERON/07/UBERON_2000707.md index c045cb6381..590c706208 100644 --- a/md/UBERON/07/UBERON_2000707.md +++ b/md/UBERON/07/UBERON_2000707.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2000807.md b/md/UBERON/07/UBERON_2000807.md index abc2c30841..0222a0f9b7 100644 --- a/md/UBERON/07/UBERON_2000807.md +++ b/md/UBERON/07/UBERON_2000807.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000807 * *Label* = myotome somite 26 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2001007.md b/md/UBERON/07/UBERON_2001007.md index 1d3812a797..10d318575d 100644 --- a/md/UBERON/07/UBERON_2001007.md +++ b/md/UBERON/07/UBERON_2001007.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001007[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001007, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/07/UBERON_2001407.md b/md/UBERON/07/UBERON_2001407.md index 76d14e6b27..708c8e5fd0 100644 --- a/md/UBERON/07/UBERON_2001407.md +++ b/md/UBERON/07/UBERON_2001407.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001407 * *Label* = infraorbital 2 - * *Definition* = Infraorbital that is the second bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Infraorbital that is the second bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2001607.md b/md/UBERON/07/UBERON_2001607.md index cf0a787e4f..e4e9acae52 100644 --- a/md/UBERON/07/UBERON_2001607.md +++ b/md/UBERON/07/UBERON_2001607.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001607 * *Label* = basipterygoid process of parasphenoid - * *Definition* = Process that is the paired process of the parasphenoid that articulates with the suspensorium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the paired process of the parasphenoid that articulates with the suspensorium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basipterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001607] + * basipterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001607 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2001707.md b/md/UBERON/07/UBERON_2001707.md index df60dcbd2a..05281bc65f 100644 --- a/md/UBERON/07/UBERON_2001707.md +++ b/md/UBERON/07/UBERON_2001707.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001707 * *Label* = infraorbital 12 - * *Definition* = Infraorbital that is the twelfth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the twelfth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2001807.md b/md/UBERON/07/UBERON_2001807.md index 8a9d0212b4..8354047b96 100644 --- a/md/UBERON/07/UBERON_2001807.md +++ b/md/UBERON/07/UBERON_2001807.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001807 * *Label* = preepiotic fossa - * *Definition* = Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * preepioccipital fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001807] + * preepioccipital fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001807 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2001907.md b/md/UBERON/07/UBERON_2001907.md index 8d40a0ffed..4141a50cd5 100644 --- a/md/UBERON/07/UBERON_2001907.md +++ b/md/UBERON/07/UBERON_2001907.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2002007.md b/md/UBERON/07/UBERON_2002007.md index 5491dac4d2..8802066087 100644 --- a/md/UBERON/07/UBERON_2002007.md +++ b/md/UBERON/07/UBERON_2002007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002007 * *Label* = supraneural 4 bone - * *Definition* = Supraneural dorsal to neural spine 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Supraneural dorsal to neural spine 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2002107.md b/md/UBERON/07/UBERON_2002107.md index 1c9338f7a0..eb2b501931 100644 --- a/md/UBERON/07/UBERON_2002107.md +++ b/md/UBERON/07/UBERON_2002107.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002107 * *Label* = medullary command nucleus - * *Definition* = Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. ## Synonyms - * MCN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002107] - * medullary pacemaker nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002107] - * pacemaker nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002107] + * MCN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002107 ] + * medullary pacemaker nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002107 ] + * pacemaker nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002107 ] ## Cross-references @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2002207.md b/md/UBERON/07/UBERON_2002207.md index 6b2fb7be5c..c76746401c 100644 --- a/md/UBERON/07/UBERON_2002207.md +++ b/md/UBERON/07/UBERON_2002207.md @@ -6,7 +6,7 @@ ## Synonyms - * mmX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002207] + * mmX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002207 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_2005207.md b/md/UBERON/07/UBERON_2005207.md index 034c856818..127f01620f 100644 --- a/md/UBERON/07/UBERON_2005207.md +++ b/md/UBERON/07/UBERON_2005207.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 3 lateral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005207] + * rostral medial 3 lateral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005207 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/07/UBERON_3000707.md b/md/UBERON/07/UBERON_3000707.md index 5acf894191..7c91bf8c7b 100644 --- a/md/UBERON/07/UBERON_3000707.md +++ b/md/UBERON/07/UBERON_3000707.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000707 * *Label* = pleurapophysis - * *Definition* = Paired processes that represent the rib attachments to the vertebra plus the ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Duellman_and_Trueb_1994] + * *Definition* = Paired processes that represent the rib attachments to the vertebra plus the ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Duellman_and_Trueb_1994 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3000807.md b/md/UBERON/07/UBERON_3000807.md index 920ab49249..4d76ae8db3 100644 --- a/md/UBERON/07/UBERON_3000807.md +++ b/md/UBERON/07/UBERON_3000807.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000807 * *Label* = carina distalis - * *Definition* = In a zygapophysis that has ridges and sulci, the distal ridge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a zygapophysis that has ridges and sulci, the distal ridge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3000907.md b/md/UBERON/07/UBERON_3000907.md index f8cce82117..c0eda0a2ad 100644 --- a/md/UBERON/07/UBERON_3000907.md +++ b/md/UBERON/07/UBERON_3000907.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000907 * *Label* = eminentia arcuata - * *Definition* = Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3001007.md b/md/UBERON/07/UBERON_3001007.md index b6de935ed4..3a3d3a18bb 100644 --- a/md/UBERON/07/UBERON_3001007.md +++ b/md/UBERON/07/UBERON_3001007.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3010007.md b/md/UBERON/07/UBERON_3010007.md index 1be27eeba3..0074f9af67 100644 --- a/md/UBERON/07/UBERON_3010007.md +++ b/md/UBERON/07/UBERON_3010007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010007 * *Label* = pit organ - * *Definition* = Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Mechanoreceptive organ of the lateral line, smaller than neuromasts, they are located on the surface of the epidermis. These receptors receive afferent and efferent innervation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010823 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3010307.md b/md/UBERON/07/UBERON_3010307.md index 3a6d6214b0..0c2a4636df 100644 --- a/md/UBERON/07/UBERON_3010307.md +++ b/md/UBERON/07/UBERON_3010307.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0002090 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/07/UBERON_3010507.md b/md/UBERON/07/UBERON_3010507.md index 0d8d5a7d15..4f97855feb 100644 --- a/md/UBERON/07/UBERON_3010507.md +++ b/md/UBERON/07/UBERON_3010507.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010507 * *Label* = precaval vein - * *Definition* = Either of a pair of veins which enter on either side of the sinus venosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Either of a pair of veins which enter on either side of the sinus venosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_3010707.md b/md/UBERON/07/UBERON_3010707.md index 346bd72adc..5ecc7e4b12 100644 --- a/md/UBERON/07/UBERON_3010707.md +++ b/md/UBERON/07/UBERON_3010707.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010707 * *Label* = m. dorsalis scapulae - * *Definition* = Muscle which originates on the lateral surface of the suprascapulae and inserts on the deltoid crest of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates on the lateral surface of the suprascapulae and inserts on the deltoid crest of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4000007.md b/md/UBERON/07/UBERON_4000007.md index d377d07635..dacb2cd393 100644 --- a/md/UBERON/07/UBERON_4000007.md +++ b/md/UBERON/07/UBERON_4000007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000007 * *Label* = obsolete basihyal bone - * *Definition* = Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Term resides in TAO. ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011618 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/07/UBERON_4000107.md b/md/UBERON/07/UBERON_4000107.md index 23e0d895f6..bcd5075738 100644 --- a/md/UBERON/07/UBERON_4000107.md +++ b/md/UBERON/07/UBERON_4000107.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000107 * *Label* = elasmodine - * *Definition* = Odontogenic tissue that consists of multiple layers of collagen fibers organized in orthogonal or twisted arrangements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontogenic tissue that consists of multiple layers of collagen fibers organized in orthogonal or twisted arrangements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4100007.md b/md/UBERON/07/UBERON_4100007.md index b6e5819c52..a007ca2206 100644 --- a/md/UBERON/07/UBERON_4100007.md +++ b/md/UBERON/07/UBERON_4100007.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4200007.md b/md/UBERON/07/UBERON_4200007.md index 07030d6976..cb014b868a 100644 --- a/md/UBERON/07/UBERON_4200007.md +++ b/md/UBERON/07/UBERON_4200007.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4200107.md b/md/UBERON/07/UBERON_4200107.md index 923707e41f..710091d5dc 100644 --- a/md/UBERON/07/UBERON_4200107.md +++ b/md/UBERON/07/UBERON_4200107.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4300007.md b/md/UBERON/07/UBERON_4300007.md index 52d5be7c24..db88e0ffeb 100644 --- a/md/UBERON/07/UBERON_4300007.md +++ b/md/UBERON/07/UBERON_4300007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300007 * *Label* = medial pelvic process - * *Definition* = Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://hdl.handle.net/10088/11710] + * *Definition* = Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://hdl.handle.net/10088/11710 ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/07/UBERON_4400007.md b/md/UBERON/07/UBERON_4400007.md index 62233b9eb6..2e38fdb738 100644 --- a/md/UBERON/07/UBERON_4400007.md +++ b/md/UBERON/07/UBERON_4400007.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4400007 * *Label* = camptotrichium - * *Definition* = Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G?raudie and Meunier 1982) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/129] + * *Definition* = Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G?raudie and Meunier 1982) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/129 ] * *Comment* = From Witten & Huysseune (2007): "Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G?raudie and Meunier 1982)." ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0000108.md b/md/UBERON/08/UBERON_0000108.md index 189e1350ff..a330fbdaf7 100644 --- a/md/UBERON/08/UBERON_0000108.md +++ b/md/UBERON/08/UBERON_0000108.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000108 * *Label* = blastula stage - * *Definition* = An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastula] + * *Definition* = An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastula ] * *Comment* = Editor note: consider adding a preceding stage 'morula stage' as part of cleavage ## Synonyms @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0000208.md b/md/UBERON/08/UBERON_0000208.md index f4728d871a..0322430869 100644 --- a/md/UBERON/08/UBERON_0000208.md +++ b/md/UBERON/08/UBERON_0000208.md @@ -27,9 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0000965 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-18T01:37:39Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000208 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_0000408.md b/md/UBERON/08/UBERON_0000408.md index 5f8a08d8c0..03166293a8 100644 --- a/md/UBERON/08/UBERON_0000408.md +++ b/md/UBERON/08/UBERON_0000408.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000408 * *Label* = vertebral ganglion - * *Definition* = Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001835] + * *Definition* = Any of a group of sympathetic ganglia which form two chains extending from the base of the skull to the coccyx along the sides of the spinal column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001835 ] ## Synonyms - * intermediate ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6572] + * intermediate ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6572 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0000908.md b/md/UBERON/08/UBERON_0000908.md index 9f7591bd4e..a64528afcb 100644 --- a/md/UBERON/08/UBERON_0000908.md +++ b/md/UBERON/08/UBERON_0000908.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000908 * *Label* = hippocampal commissure - * *Definition* = A commissure that connects the two hippocampi across the middle line. The fibers emanate from the lateral portions of the body of the fornix[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Commissure_of_fornix] + * *Definition* = A commissure that connects the two hippocampi across the middle line. The fibers emanate from the lateral portions of the body of the fornix[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Commissure_of_fornix ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * commissura hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61970[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissure of fornix of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61970] - * delta fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008221] - * dorsal hippocampal commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61970] - * fornical commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61970] - * fornix commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61970] - * hippocampus commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008221] - * commissure of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Commissure_of_fornix] - * commissure of the fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FC] - * commissure of the fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FG] - * hippocampal commissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:hc] + * commissura hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61970, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissure of fornix of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61970 ] + * delta fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008221 ] + * dorsal hippocampal commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61970 ] + * fornical commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61970 ] + * fornix commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61970 ] + * hippocampus commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008221 ] + * commissure of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Commissure_of_fornix ] + * commissure of the fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FC ] + * commissure of the fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FG ] + * hippocampal commissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:hc ] ## Cross-references @@ -32,7 +32,7 @@ * NIF_GrossAnatomy:birnlex_746 * NeuroNames:273 * SCTID:369115003 - * UMLS:C0228287 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_746] + * UMLS:C0228287 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_746 ] * Wikipedia:Commissure_of_fornix * http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png @@ -45,7 +45,7 @@ * [dorsal telencephalic commissure](../../UBERON/40/UBERON_0005340.md) * [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere white matter](../../UBERON/37/UBERON_0002437.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [body of fornix](../../UBERON/80/UBERON_0004680.md) * [connects](../../ts/core#connects.md) some [Ammon's horn](../../UBERON/54/UBERON_0001954.md) ## Equivalencies @@ -57,8 +57,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:Commissure-MA_0002723 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001008.md b/md/UBERON/08/UBERON_0001008.md index cce8a10b5a..dd1c31334b 100644 --- a/md/UBERON/08/UBERON_0001008.md +++ b/md/UBERON/08/UBERON_0001008.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001008 * *Label* = renal system - * *Definition* = The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072001] + * *Definition* = The renal system in an anatomical system that maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072001 ] * *Comment* = In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here ## Synonyms * excretory system - * renal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001977] - * systema urinaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7159] - * systema urinarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003092] + * renal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001977 ] + * systema urinaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7159 ] + * systema urinarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003092 ] * urinary system * urinary tract - * renal or urinary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:5901] + * renal or urinary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:5901 ] * renal/urinary system ## Cross-references @@ -39,7 +39,7 @@ * SCTID:362204003 * TADS:0000162 * TAO:0000163 - * UMLS:C1508753 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urinary_System] + * UMLS:C1508753 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urinary_System ] * VHOG:0000723 * WBbt:0005736 * Wikipedia:Excretory_system @@ -61,7 +61,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable_of](../../RO/15/RO_0002215.md) some [excretion](../../GO/88/GO_0007588.md) ## Other Logical Axioms @@ -71,8 +71,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Evolution of vertebrate renal anatomy appears quite conservative when compared, for example, to evolution of respiratory and cardiovascular systems in vertebrates. Major anatomical changes in vertebrates kidneys separate those of birds and mammals from kidneys of lower vertebrates. General increase in animal size from fish to mammals is reflected by an increase in total number of nephrons per kidney, rather than by constant change in tubular dimensions.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001108.md b/md/UBERON/08/UBERON_0001108.md index 4ad5420532..8e9bebc8bf 100644 --- a/md/UBERON/08/UBERON_0001108.md +++ b/md/UBERON/08/UBERON_0001108.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001108 * *Label* = omohyoid muscle - * *Definition* = The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omohyoid_muscle] + * *Definition* = The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omohyoid_muscle ] * *Comment* = interior and superior belly ## Synonyms * omohyoid - * omohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omohyoid_muscle] - * omohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omohyoid_muscle] - * musculus omohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * omohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omohyoid_muscle ] + * omohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omohyoid_muscle ] + * musculus omohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:13342 * MA:0002348 * SCTID:244833001 - * UMLS:C0224163 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Omohyoid] + * UMLS:C0224163 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Omohyoid ] * Wikipedia:Omohyoid_muscle * http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001208.md b/md/UBERON/08/UBERON_0001208.md index 733c375d55..4a5e3075ea 100644 --- a/md/UBERON/08/UBERON_0001208.md +++ b/md/UBERON/08/UBERON_0001208.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001208 * *Label* = submucosa of large intestine - * *Definition* = A submucosa that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * large intestinal submucosa * large intestine submucosa - * submucous layer of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002111] + * submucous layer of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002111 ] ## Cross-references * BTO:0002111 * FMA:14970 * MA:0002690 - * UMLS:C0734204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Submucosa] + * UMLS:C0734204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Submucosa ] * ncithesaurus:Large_Intestinal_Submucosa ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001308.md b/md/UBERON/08/UBERON_0001308.md index 8fe9124b4a..e244f5b2fd 100644 --- a/md/UBERON/08/UBERON_0001308.md +++ b/md/UBERON/08/UBERON_0001308.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001308 * *Label* = external iliac artery - * *Definition* = The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_iliac_artery] + * *Definition* = The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_iliac_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria iliaca externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_iliac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria iliaca externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_iliac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001973 * OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA * SCTID:181352000 - * UMLS:C0226398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Iliac_Artery] + * UMLS:C0226398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Iliac_Artery ] * Wikipedia:External_iliac_artery * galen:ExternalIliacArtery * http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001408.md b/md/UBERON/08/UBERON_0001408.md index 1ae2497f8c..2df602665f 100644 --- a/md/UBERON/08/UBERON_0001408.md +++ b/md/UBERON/08/UBERON_0001408.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001408 * *Label* = semispinalis cervicis - * *Definition* = The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebr, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_cervicis] + * *Definition* = The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebr, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_cervicis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * musculus semispinalis cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_cervicis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus semispinalis cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_cervicis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:22829 * MA:0002373 * SCTID:244869009 - * UMLS:C0224317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semispinalis_Cervicis] + * UMLS:C0224317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semispinalis_Cervicis ] * Wikipedia:Semispinalis_cervicis * http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001508.md b/md/UBERON/08/UBERON_0001508.md index 5ee994b91a..421e161626 100644 --- a/md/UBERON/08/UBERON_0001508.md +++ b/md/UBERON/08/UBERON_0001508.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001508 * *Label* = arch of aorta - * *Definition* = begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arch_of_aorta] + * *Definition* = begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arch_of_aorta ] * *Comment* = Usage notes: Do not confuse with aortic arch; check EHDAA2. Taxon notes: birds have right aortic arch, mammals left. ## Synonyms - * arcus aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3768[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3768] - * thoracic aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:471] + * arcus aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3768, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3768 ] + * thoracic aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:471 ] ## Cross-references @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The curving portion between the ascending aorta and the descending aorta, giving rise to the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The double systemic arch arches (left and right) present in amphibians and reptiles become reduced to a single systemic arch - the right in birds, the left in mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001608.md b/md/UBERON/08/UBERON_0001608.md index bc9df9137f..cafcb6b750 100644 --- a/md/UBERON/08/UBERON_0001608.md +++ b/md/UBERON/08/UBERON_0001608.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001608 * *Label* = dilatator pupillae - * *Definition* = The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on ?1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] + * *Definition* = The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on ?1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] ## Synonyms * dilator muscle of pupil * dilator of pupil * dilator pupillae - * dilator pupillae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * iris dilator muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001371] - * musculus dilatator pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49158[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pupillary dilator muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * radial muscle of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * dilator pupillae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001371] - * iris dilator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * musculus dilatator pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus dilator pupillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001371] - * pupil dilator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * pupil dilator muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * pupillary dilator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * pupillary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * radial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] - * radiating fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_dilator_muscle] + * dilator pupillae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * iris dilator muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001371 ] + * musculus dilatator pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49158, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pupillary dilator muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * radial muscle of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * dilator pupillae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001371 ] + * iris dilator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * musculus dilatator pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus dilator pupillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001371 ] + * pupil dilator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * pupil dilator muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * pupillary dilator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * pupillary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * radial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] + * radiating fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_dilator_muscle ] ## Cross-references @@ -32,7 +32,7 @@ * FMA:49158 * MA:0001288 * SCTID:280890008 - * UMLS:C0229190 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dilator_Pupillae_Muscle] + * UMLS:C0229190 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dilator_Pupillae_Muscle ] * Wikipedia:Iris_dilator_muscle * http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001708.md b/md/UBERON/08/UBERON_0001708.md index 36290631b3..6d5a2e99a4 100644 --- a/md/UBERON/08/UBERON_0001708.md +++ b/md/UBERON/08/UBERON_0001708.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001708 * *Label* = jaw skeleton - * *Definition* = Subdivision of skeleton which includes upper and lower jaw skeletons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jaw[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton which includes upper and lower jaw skeletons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jaw, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = TODO: move ZFA:0001227 (it is the entire jaw skeleton). Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983). ## Synonyms - * jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001905] - * jaw cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001227] - * mandibular arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001227] + * jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001905 ] + * jaw cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001227 ] + * mandibular arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001227 ] * anterior splanchnocranium * jaws - * mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001227] + * mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001227 ] * oral jaw skeleton * pharyngeal arch 1 skeleton * visceral arch 1 @@ -29,7 +29,7 @@ * OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA * SCTID:181811001 * TAO:0001227 - * UMLS:C0022359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Jaw] + * UMLS:C0022359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Jaw ] * Wikipedia:Jaw * ZFA:0001227 * galen:Jaw @@ -46,7 +46,7 @@ * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) * [part_of](../../BFO/50/BFO_0000050.md) some [jaw region](../../UBERON/95/UBERON_0011595.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Gnathostomata ](../../NCBITaxon/76/NCBITaxon_7776.md) * [capable_of](../../RO/15/RO_0002215.md) some [chewing](../../NBO/73/NBO_0000073.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) @@ -60,8 +60,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal and cartilage elements of the first pharyngeal arch.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001808.md b/md/UBERON/08/UBERON_0001808.md index e9991c7649..f2e8ddff26 100644 --- a/md/UBERON/08/UBERON_0001808.md +++ b/md/UBERON/08/UBERON_0001808.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001808 * *Label* = parasympathetic ganglion - * *Definition* = Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100303] + * *Definition* = Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100303 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * ganglion parasympathicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001256] - * ganglion parasympathicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parasympathetic_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion parasympathicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001256 ] + * ganglion parasympathicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parasympathetic_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002469 * NIF_GrossAnatomy:nlx_anat_100303 * SCTID:279284004 - * UMLS:C0017069 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parasympathetic_Ganglion] + * UMLS:C0017069 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parasympathetic_Ganglion ] * Wikipedia:Parasympathetic_ganglion * http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autonomic ganglion](../../UBERON/05/UBERON_0001805.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasympathetic nervous system](../../UBERON/11/UBERON_0000011.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0001908.md b/md/UBERON/08/UBERON_0001908.md index b10f1c82b9..962bcdf5c9 100644 --- a/md/UBERON/08/UBERON_0001908.md +++ b/md/UBERON/08/UBERON_0001908.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001908 * *Label* = optic tract - * *Definition* = Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_tract[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_tract, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = editor note: relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with' ## Synonyms * optic lemniscus - * tractus optici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:460[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus opticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visual pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:735] + * tractus optici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:460, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus opticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visual pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:735 ] ## Cross-references @@ -23,11 +23,11 @@ * MA:0001099 * MESH:A08.612.220.860 * NIF_GrossAnatomy:birnlex_1684 - * NeuroNames:460 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1684] + * NeuroNames:460 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1684 ] * SCTID:280952003 * TAO:0000252 - * UMLS:C0152405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1684] - * UMLS:C0152405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Tract] + * UMLS:C0152405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1684 ] + * UMLS:C0152405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Tract ] * VHOG:0001164 * Wikipedia:Optic_tract * XAO:0004101 @@ -58,8 +58,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002008.md b/md/UBERON/08/UBERON_0002008.md index fd15dc7378..f312878c8f 100644 --- a/md/UBERON/08/UBERON_0002008.md +++ b/md/UBERON/08/UBERON_0002008.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002008 * *Label* = cardiac nerve plexus - * *Definition* = a plexus of nerves situated at the base of the heart that innervate the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_plexus] + * *Definition* = a plexus of nerves situated at the base of the heart that innervate the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * autonomic nerve plexus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autonomic plexus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autonomic nerve plexus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autonomic plexus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * cardiac plexus - * heart autonomic nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart autonomic plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart visceral nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart visceral plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * plexus cardiacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6628[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visceral nerve plexus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral plexus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * plexus cardiacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * heart autonomic nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart autonomic plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart visceral nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart visceral plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * plexus cardiacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6628, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visceral nerve plexus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral plexus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * plexus cardiacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:6628 * MA:0001138 * SCTID:280511002 - * UMLS:C0459528 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Nerve_Plexus] + * UMLS:C0459528 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Nerve_Plexus ] * Wikipedia:Cardiac_plexus * http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autonomic nerve plexus](../../UBERON/16/UBERON_0001816.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002108.md b/md/UBERON/08/UBERON_0002108.md index f1a716fe08..80b08fa7e2 100644 --- a/md/UBERON/08/UBERON_0002108.md +++ b/md/UBERON/08/UBERON_0002108.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002108 * *Label* = small intestine - * *Definition* = Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Small_intestine] + * *Definition* = Subdivision of digestive tract that connects the stomach to the large intestine and is where much of the digestion and absorption of food takes place (with the exception of ruminants). The mammalian small intestine is long and coiled and can be differentiated histologically into: duodenum, jejunem, ileum[WP,cjm,Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Small_intestine ] ## Synonyms * small bowel * small intestine * anterior intestine - * intestinum tenue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000651] - * intestinum tenue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Small_intestine[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intestinum tenue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000651 ] + * intestinum tenue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Small_intestine, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * mid intestine ## Cross-references @@ -31,7 +31,7 @@ * OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA * SCTID:181250005 * TAO:0001323 - * UMLS:C0021852 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestine] + * UMLS:C0021852 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestine ] * VHOG:0000055 * Wikipedia:Small_intestine * XAO:0000130 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002208.md b/md/UBERON/08/UBERON_0002208.md index 91e7604cb4..0a9b162e40 100644 --- a/md/UBERON/08/UBERON_0002208.md +++ b/md/UBERON/08/UBERON_0002208.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002208 * *Label* = sternebra - * *Definition* = one of the bony segments of the sternum[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternebra[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/sternebra] + * *Definition* = one of the bony segments of the sternum[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternebra, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/sternebra ] * *Comment* = Note that some definitions state that this a segment of the primordial sternum. ## Synonyms - * sternebral bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18724] + * sternebral bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18724 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002308.md b/md/UBERON/08/UBERON_0002308.md index e6927341e8..05fd8971f8 100644 --- a/md/UBERON/08/UBERON_0002308.md +++ b/md/UBERON/08/UBERON_0002308.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002308 * *Label* = nucleus of brain - * *Definition* = Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83840[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_(neuroanatomy)] + * *Definition* = Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83840, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_(neuroanatomy) ] * *Comment* = We considered merging with 'neural nucleus' ## Synonyms @@ -15,7 +15,7 @@ * FMA:83840 * MA:0000811 * SCTID:426465002 - * UMLS:C1706993 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain_Nucleus] + * UMLS:C1706993 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain_Nucleus ] * Wikipedia:Nucleus_(neuroanatomy) * ZFA:0005575 * ncithesaurus:Brain_Nucleus @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural nucleus](../../UBERON/25/UBERON_0000125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002408.md b/md/UBERON/08/UBERON_0002408.md index 3f2566010c..9a81c1ae6a 100644 --- a/md/UBERON/08/UBERON_0002408.md +++ b/md/UBERON/08/UBERON_0002408.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002408 * *Label* = parietal serous pericardium - * *Definition* = Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_pericardium] + * *Definition* = Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_pericardium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lamina parietalis (pericardii serosum) - * lamina parietalis pericardii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9870[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina parietalis pericardii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9870, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * parietal layer of serous pericardium * parietal pericardium @@ -22,7 +22,7 @@ * FMA:9870 * MA:0000483 * SCTID:243956000 - * UMLS:C0225969 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parietal_Pericardium] + * UMLS:C0225969 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parietal_Pericardium ] * VHOG:0000537 * Wikipedia:Parietal_pericardium * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002508.md b/md/UBERON/08/UBERON_0002508.md index 2fcb97debb..e7613031cf 100644 --- a/md/UBERON/08/UBERON_0002508.md +++ b/md/UBERON/08/UBERON_0002508.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002508 * *Label* = celiac lymph node - * *Definition* = The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes, hepatic lymph nodes, splenic lymph nodes [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_lymph_node] + * *Definition* = The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes, hepatic lymph nodes, splenic lymph nodes [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_lymph_node ] ## Synonyms @@ -17,7 +17,7 @@ * FMA:12792 * MA:0002828 * SCTID:245343000 - * UMLS:C0229766 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Celiac_Lymph_Node] + * UMLS:C0229766 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Celiac_Lymph_Node ] * Wikipedia:Celiac_lymph_node * http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray613.png/200px-Gray613.png * ncithesaurus:Celiac_Lymph_Node @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002608.md b/md/UBERON/08/UBERON_0002608.md index d5b4d49304..2a2582d9bf 100644 --- a/md/UBERON/08/UBERON_0002608.md +++ b/md/UBERON/08/UBERON_0002608.md @@ -7,21 +7,21 @@ ## Synonyms * dorsal part of ventral lateral posterior nucleus (jones) - * nucleus dorsooralis (van buren) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1144] - * nucleus lateralis intermedius mediodorsalis situs dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1144] - * nucleus ventralis lateralis, pars caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1144] - * ventral lateral nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62194] - * ventral lateral thalamic nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62194] - * VLC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1144[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * caudal part of the ventral lateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:339] + * nucleus dorsooralis (van buren) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1144 ] + * nucleus lateralis intermedius mediodorsalis situs dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1144 ] + * nucleus ventralis lateralis, pars caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1144 ] + * ventral lateral nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62194 ] + * ventral lateral thalamic nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62194 ] + * VLC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1144, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * caudal part of the ventral lateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:339 ] ## Cross-references * BAMS:VLC * FMA:62194 * NIF_GrossAnatomy:birnlex_1144 - * NeuroNames:339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1144] - * UMLS:C0175281 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1144] + * NeuroNames:339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1144 ] + * UMLS:C0175281 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1144 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002708.md b/md/UBERON/08/UBERON_0002708.md index 7e6844d456..633880b16b 100644 --- a/md/UBERON/08/UBERON_0002708.md +++ b/md/UBERON/08/UBERON_0002708.md @@ -6,16 +6,16 @@ ## Synonyms - * periventricular nucleus, posterior subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62349] - * posterior periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1466] - * posterior periventricular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62349] - * posterior periventricular nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62349] - * PPe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1466[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * griseum periventriculare hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:419[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus periventricularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002479] - * periventricular hypothalamic nucleus, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:419] - * posterior paraventricular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVp] - * posterior periventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVp] + * periventricular nucleus, posterior subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62349 ] + * posterior periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1466 ] + * posterior periventricular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62349 ] + * posterior periventricular nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62349 ] + * PPe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1466, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * griseum periventriculare hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:419, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus periventricularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002479 ] + * periventricular hypothalamic nucleus, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:419 ] + * posterior paraventricular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVp ] + * posterior periventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVp ] ## Cross-references @@ -24,8 +24,8 @@ * BTO:0002479 * FMA:62349 * NIF_GrossAnatomy:birnlex_1466 - * NeuroNames:419 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1466] - * UMLS:C0262317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1466] + * NeuroNames:419 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1466 ] + * UMLS:C0262317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1466 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002808.md b/md/UBERON/08/UBERON_0002808.md index 4a4c6cfb85..c45e4224f7 100644 --- a/md/UBERON/08/UBERON_0002808.md +++ b/md/UBERON/08/UBERON_0002808.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002808 * *Label* = left temporal lobe - * *Definition* = A temporal lobe that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A temporal lobe that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * NIF_GrossAnatomy:birnlex_1784 * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA * SCTID:314158000 - * UMLS:C1281971 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1784] + * UMLS:C1281971 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1784 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) and [temporal lobe](../../UBERON/71/UBERON_0001871.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0002908.md b/md/UBERON/08/UBERON_0002908.md index 4cf543a02d..26c559be9c 100644 --- a/md/UBERON/08/UBERON_0002908.md +++ b/md/UBERON/08/UBERON_0002908.md @@ -6,10 +6,10 @@ ## Synonyms - * splenial sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83777] - * sulcus subparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4026] - * suprasplenial sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83777] - * sbps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4026[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * splenial sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83777 ] + * sulcus subparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4026 ] + * suprasplenial sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83777 ] + * sbps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4026, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -17,10 +17,10 @@ * BM:Tel-Cx-SPS * FMA:83777 * NIF_GrossAnatomy:birnlex_4026 - * NeuroNames:102 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4026] + * NeuroNames:102 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4026 ] * SCTID:279352008 - * UMLS:C0228216 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4026] - * UMLS:C1281079 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4026] + * UMLS:C0228216 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4026 ] + * UMLS:C1281079 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4026 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003008.md b/md/UBERON/08/UBERON_0003008.md index 365d11350a..d2b7fb0e89 100644 --- a/md/UBERON/08/UBERON_0003008.md +++ b/md/UBERON/08/UBERON_0003008.md @@ -3,44 +3,44 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003008 * *Label* = dorsal longitudinal fasciculus of hypothalamus - * *Definition* = A dorsal longitudinal fasciculus that is part of a hypothalamus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal longitudinal fasciculus that is part of a hypothalamus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bundle of Schutz of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bundle of Schutz of preoptico-hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bundle of Schutz of preoptico-hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal longitudinal fasciculus of preoptico-hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal longitudinal fasciculus of preoptico-hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus of Schutz of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus of Schutz of preoptico-hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus of Schutz of preoptico-hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypothalamus bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypothalamus dorsal longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypothalamus fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypothalamus posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior longitudinal fasciculus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior longitudinal fasciculus of preoptico-hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior longitudinal fasciculus of preoptico-hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic area bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic area dorsal longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic area fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic area posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic region bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic region dorsal longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic region fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * preoptico-hypothalamic region posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dlfh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_898[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsal longitudinal fasciculus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:432] - * fasciculus longitudinalis dorsalis (hypothalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:432[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bundle of Schutz of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bundle of Schutz of preoptico-hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bundle of Schutz of preoptico-hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal longitudinal fasciculus of preoptico-hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal longitudinal fasciculus of preoptico-hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus of Schutz of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus of Schutz of preoptico-hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus of Schutz of preoptico-hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypothalamus bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypothalamus dorsal longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypothalamus fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypothalamus posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior longitudinal fasciculus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior longitudinal fasciculus of preoptico-hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior longitudinal fasciculus of preoptico-hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic area bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic area dorsal longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic area fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic area posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic region bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic region dorsal longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic region fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * preoptico-hypothalamic region posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dlfh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_898, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsal longitudinal fasciculus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:432 ] + * fasciculus longitudinalis dorsalis (hypothalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:432, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dlfh * FMA:62063 * NIF_GrossAnatomy:birnlex_898 - * NeuroNames:432 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_898] - * UMLS:C0262221 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_898] + * NeuroNames:432 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_898 ] + * UMLS:C0262221 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_898 ] ## Subsets @@ -54,15 +54,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal longitudinal fasciculus](../../UBERON/45/UBERON_0003045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypothalamus](../../UBERON/98/UBERON_0001898.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003108.md b/md/UBERON/08/UBERON_0003108.md index 46ab260b82..b837a125be 100644 --- a/md/UBERON/08/UBERON_0003108.md +++ b/md/UBERON/08/UBERON_0003108.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003108 * *Label* = suspensorium - * *Definition* = (1) the arrangement of bones which supports the jaw from the braincase; (2) in teleost fish, a large, usually triangular, bone which supports the jaw. The teleost suspensorium is formed by fusion of various elements which vary among different taxa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossarySq.html] + * *Definition* = (1) the arrangement of bones which supports the jaw from the braincase; (2) in teleost fish, a large, usually triangular, bone which supports the jaw. The teleost suspensorium is formed by fusion of various elements which vary among different taxa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossarySq.html ] * *Comment* = Editor notes: requires review, possible split; TAO/ZFA structure is splanchoncranium (but includes some dermal bones as parts). Note AAO also includes 'palatoquadrate and suspensorium' as a class ## Synonyms - * hyopalatine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000444] - * suspensoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000444] + * hyopalatine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000444 ] + * suspensoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000444 ] * mandibular suspensorium ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003308.md b/md/UBERON/08/UBERON_0003308.md index 98b937e2eb..dae920e2ac 100644 --- a/md/UBERON/08/UBERON_0003308.md +++ b/md/UBERON/08/UBERON_0003308.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003308 * *Label* = floor plate of telencephalon - * *Definition* = A floor plate that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate telencephalic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000914] - * floor plate telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000783] - * floorplate of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000914] - * telencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * telencephalon floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * floor plate telencephalic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000914 ] + * floor plate telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000783 ] + * floorplate of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000914 ] + * telencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * telencephalon floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,14 @@ ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [regional part of telencephalon](../../UBERON/91/UBERON_0002791.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms @@ -46,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003408.md b/md/UBERON/08/UBERON_0003408.md index dedba22d35..8134bc3921 100644 --- a/md/UBERON/08/UBERON_0003408.md +++ b/md/UBERON/08/UBERON_0003408.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003408 * *Label* = gland of gut - * *Definition* = A gland that is part of a digestive tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a digestive tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive tract gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of digestive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of lower gastrointestinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gut gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower gastrointestinal tract gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive tract gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of digestive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of lower gastrointestinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gut gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower gastrointestinal tract gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003508.md b/md/UBERON/08/UBERON_0003508.md index cf2d42857f..6053687f18 100644 --- a/md/UBERON/08/UBERON_0003508.md +++ b/md/UBERON/08/UBERON_0003508.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003508 * *Label* = pedal digit blood vessel - * *Definition* = A blood vessel that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of foot blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000645] - * hind limb digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * terminal segment of free lower limb digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * blood vessel of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of foot blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000645 ] + * hind limb digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * terminal segment of free lower limb digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003608.md b/md/UBERON/08/UBERON_0003608.md index 052119616c..23a7924c6a 100644 --- a/md/UBERON/08/UBERON_0003608.md +++ b/md/UBERON/08/UBERON_0003608.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003608 * *Label* = hindlimb long bone - * *Definition* = A long bone that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A long bone that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long bone](../../UBERON/95/UBERON_0002495.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003708.md b/md/UBERON/08/UBERON_0003708.md index 10a3c51b76..0660632ea9 100644 --- a/md/UBERON/08/UBERON_0003708.md +++ b/md/UBERON/08/UBERON_0003708.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003708 * *Label* = carotid sinus - * *Definition* = In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_sinus] + * *Definition* = In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_sinus ] ## Synonyms - * sinus caroticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus caroticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0003908.md b/md/UBERON/08/UBERON_0003908.md index 07526bbed5..c2e5a0477c 100644 --- a/md/UBERON/08/UBERON_0003908.md +++ b/md/UBERON/08/UBERON_0003908.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003908 * *Label* = right atrioventricular canal - * *Definition* = An atrioventricular canal that is in the right side of a atrioventricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An atrioventricular canal that is in the right side of a atrioventricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: EHDAA2 represents lumen ## Synonyms * right AVC - * right atrio-ventricular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001719] + * right atrio-ventricular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001719 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrioventricular canal](../../UBERON/87/UBERON_0002087.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [atrioventricular region](../../UBERON/20/UBERON_0011820.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004008.md b/md/UBERON/08/UBERON_0004008.md index e4d3da81a6..4beb509286 100644 --- a/md/UBERON/08/UBERON_0004008.md +++ b/md/UBERON/08/UBERON_0004008.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004008 * *Label* = cerebellar plate - * *Definition* = the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000856] + * *Definition* = the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000856 ] ## Synonyms * cerebellum plate - * cerebellum roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004401] + * cerebellum roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004401 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004108.md b/md/UBERON/08/UBERON_0004108.md index 251014d277..f7eea37c16 100644 --- a/md/UBERON/08/UBERON_0004108.md +++ b/md/UBERON/08/UBERON_0004108.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004108 * *Label* = clivus of occipital bone - * *Definition* = Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0010558[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clivus_%28anatomy%29] + * *Definition* = Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0010558, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clivus_%28anatomy%29 ] * *Comment* = The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. Editor note: check relationships. ## Synonyms - * clivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0010558] - * occipital bone clivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75747] - * Wackenheim's clivus line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clivus_%28anatomy%29] + * clivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0010558 ] + * occipital bone clivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75747 ] + * Wackenheim's clivus line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clivus_%28anatomy%29 ] ## Cross-references * FMA:75747 * NeuroNames:674 * SCTID:361736007 - * UMLS:C0222724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Clivus] + * UMLS:C0222724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Clivus ] * Wikipedia:Clivus_%28anatomy%29 * http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png * ncithesaurus:Clivus @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004208.md b/md/UBERON/08/UBERON_0004208.md index f7b807961f..30b19571da 100644 --- a/md/UBERON/08/UBERON_0004208.md +++ b/md/UBERON/08/UBERON_0004208.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004208 * *Label* = nephrogenic mesenchyme - * *Definition* = Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072076] + * *Definition* = Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072076 ] * *Comment* = The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowmans capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowmans capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] ## Synonyms - * mesenchyme of nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nephron mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nephron mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [nephron](../../UBERON/85/UBERON_0001285.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004408.md b/md/UBERON/08/UBERON_0004408.md index e6c297c528..19a43f93cb 100644 --- a/md/UBERON/08/UBERON_0004408.md +++ b/md/UBERON/08/UBERON_0004408.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004408 * *Label* = distal epiphysis of ulna - * *Definition* = A distal epiphysis that is part of a ulna [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a ulna [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33754] - * lower end of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33754] + * distal end of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33754 ] + * lower end of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33754 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004508.md b/md/UBERON/08/UBERON_0004508.md index b0d1d45412..779185163a 100644 --- a/md/UBERON/08/UBERON_0004508.md +++ b/md/UBERON/08/UBERON_0004508.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004508 * *Label* = skeletal muscle tissue of levator palpebrae superioris - * *Definition* = A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [levator palpebrae superioris](../../UBERON/04/UBERON_0001604.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004608.md b/md/UBERON/08/UBERON_0004608.md index b6f515533e..66333573ac 100644 --- a/md/UBERON/08/UBERON_0004608.md +++ b/md/UBERON/08/UBERON_0004608.md @@ -7,14 +7,15 @@ ## Synonyms - * ninth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8337] + * costa IX [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ninth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8337 ] ## Cross-references * FMA:8337 * MA:0001409 * SCTID:244664001 - * UMLS:C1709955 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_9] + * UMLS:C1709955 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_9 ] * ncithesaurus:Rib_9 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 9 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004708.md b/md/UBERON/08/UBERON_0004708.md index 33f5c34df9..42ca111431 100644 --- a/md/UBERON/08/UBERON_0004708.md +++ b/md/UBERON/08/UBERON_0004708.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004708 * *Label* = paired limb/fin - * *Definition* = An appendage that is part of a appendage girdle complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/p/geneontology/ontology-requests/8818/] + * *Definition* = An appendage that is part of a appendage girdle complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/p/geneontology/ontology-requests/8818/ ] * *Comment* = this class is the union of the classes limb, pectoral fin and pelvic fin. ## Synonyms - * girdle-associated appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * limb/fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pectoral or pelvic appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pelvic/pectoral appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * jointed paired lateral appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * paired appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000067] + * girdle-associated appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * limb/fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pectoral or pelvic appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pelvic/pectoral appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * jointed paired lateral appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * paired appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000067 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage](../../UBERON/26/UBERON_0000026.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendage girdle complex](../../UBERON/07/UBERON_0010707.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009872 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004808.md b/md/UBERON/08/UBERON_0004808.md index 0ce23f858e..9cb2d5af37 100644 --- a/md/UBERON/08/UBERON_0004808.md +++ b/md/UBERON/08/UBERON_0004808.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004808 * *Label* = gastrointestinal system epithelium - * *Definition* = An epithelium that is part of a digestive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a digestive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive system epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive system epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive system epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive system epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0004908.md b/md/UBERON/08/UBERON_0004908.md index a4e7a13599..f1ef5cfe16 100644 --- a/md/UBERON/08/UBERON_0004908.md +++ b/md/UBERON/08/UBERON_0004908.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004908 * *Label* = upper digestive tract - * *Definition* = the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] + * *Definition* = the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract ] * *Comment* = WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L. In Galen, entire GI tract excludes esophagus ## Synonyms @@ -15,7 +15,7 @@ * FMA:49177 * SCTID:181244000 - * UMLS:C0226874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Gastrointestinal_Tract] + * UMLS:C0226874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Gastrointestinal_Tract ] * Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract * galen:UpperGastrointestinalTract * ncithesaurus:Upper_Gastrointestinal_Tract @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005008.md b/md/UBERON/08/UBERON_0005008.md index 19902ba900..5416d01e38 100644 --- a/md/UBERON/08/UBERON_0005008.md +++ b/md/UBERON/08/UBERON_0005008.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005008 * *Label* = mucosa of minor calyx - * *Definition* = A mucosa that is part of a minor calyx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a minor calyx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * minor calix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calyx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calyx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calyx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * minor calyx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of minor calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of minor calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of minor calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of minor calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of minor calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of minor calix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of minor calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * minor calix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calyx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calyx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calyx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * minor calyx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of minor calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of minor calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of minor calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of minor calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of minor calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of minor calix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of minor calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [minor calyx](../../UBERON/27/UBERON_0001227.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005108.md b/md/UBERON/08/UBERON_0005108.md index 3295995083..23fbea22ed 100644 --- a/md/UBERON/08/UBERON_0005108.md +++ b/md/UBERON/08/UBERON_0005108.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005108 * *Label* = metanephric epithelium - * *Definition* = An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072207] + * *Definition* = An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072207 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005208.md b/md/UBERON/08/UBERON_0005208.md index 36ef709cc0..7e9c2e3ce3 100644 --- a/md/UBERON/08/UBERON_0005208.md +++ b/md/UBERON/08/UBERON_0005208.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005208 * *Label* = right atrium valve - * *Definition* = A valve that is part of a right atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A valve that is part of a right atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * valve of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17327] - * right atrium valves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000302[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * valve of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17327 ] + * right atrium valves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000302, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) and [valve](../../UBERON/78/UBERON_0003978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005308.md b/md/UBERON/08/UBERON_0005308.md index a1b003a6af..d32683ea8a 100644 --- a/md/UBERON/08/UBERON_0005308.md +++ b/md/UBERON/08/UBERON_0005308.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005308 * *Label* = nephrostome - * *Definition* = The nephrostome is the opening of the pronephros into the body cavity[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039018] + * *Definition* = The nephrostome is the opening of the pronephros into the body cavity[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039018 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005408.md b/md/UBERON/08/UBERON_0005408.md index 71b790c322..607dbdd8bf 100644 --- a/md/UBERON/08/UBERON_0005408.md +++ b/md/UBERON/08/UBERON_0005408.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005408 * *Label* = circumventricular organ - * *Definition* = Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090312[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circumventricular_organs] + * *Definition* = Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090312, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circumventricular_organs ] * *Comment* = AO notes: MA subdivides into sensory and secretory ## Synonyms - * CVO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090312] - * circumventricular organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090312] - * circumventricular organ of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84081] + * CVO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090312 ] + * circumventricular organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090312 ] + * circumventricular organ of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84081 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005608.md b/md/UBERON/08/UBERON_0005608.md index 91d8673d6e..a23921d8d8 100644 --- a/md/UBERON/08/UBERON_0005608.md +++ b/md/UBERON/08/UBERON_0005608.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005608 * *Label* = hyoid artery - * *Definition* = The second arch becomes the hyoid artery, which is prominent in early development and normally persists as the caroticotympanic branch of the ICA[Padget] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ajnr.org/cgi/content/full/21/3/572] + * *Definition* = The second arch becomes the hyoid artery, which is prominent in early development and normally persists as the caroticotympanic branch of the ICA[Padget] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ajnr.org/cgi/content/full/21/3/572 ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005708.md b/md/UBERON/08/UBERON_0005708.md index 9ee21f1d7f..e376951f33 100644 --- a/md/UBERON/08/UBERON_0005708.md +++ b/md/UBERON/08/UBERON_0005708.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005708 * *Label* = lower jaw incisor odontogenic papilla - * *Definition* = An odontogenic papilla that is part of a lower jaw incisor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a lower jaw incisor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * lower incisor mesenchyme - * lower jaw incisor dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001023] + * lower jaw incisor dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001023 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw incisor](../../UBERON/51/UBERON_0003451.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005808.md b/md/UBERON/08/UBERON_0005808.md index 8279dfbe98..e3a1d5af92 100644 --- a/md/UBERON/08/UBERON_0005808.md +++ b/md/UBERON/08/UBERON_0005808.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005808 * *Label* = bone tissue of long bone - * *Definition* = A bone tissue that is part of a long bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone tissue that is part of a long bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [long bone](../../UBERON/95/UBERON_0002495.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0005908.md b/md/UBERON/08/UBERON_0005908.md index b13dc2a912..b3f46fadb3 100644 --- a/md/UBERON/08/UBERON_0005908.md +++ b/md/UBERON/08/UBERON_0005908.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005908 * *Label* = conjunctival sac - * *Definition* = Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20291] + * *Definition* = Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20291 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006008.md b/md/UBERON/08/UBERON_0006008.md index b32ebdeaf8..f3a6c7df8b 100644 --- a/md/UBERON/08/UBERON_0006008.md +++ b/md/UBERON/08/UBERON_0006008.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006008 * *Label* = fibrous ring of heart - * *Definition* = The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_rings_of_heart] + * *Definition* = The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_rings_of_heart ] * *Comment* = todo - compare with ZFA atrioventricular ring, part of the conduction system ## Synonyms - * anulus fibrosus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9497] - * Lower's ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003628] - * annulus fibrosus cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_rings_of_heart[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anulus fibrosus cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_rings_of_heart] - * aortic annulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_rings_of_heart] - * atrioventricular ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003628] - * coronary tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003628] - * fibrous ring of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_rings_of_heart] + * anulus fibrosus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9497 ] + * Lower's ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003628 ] + * annulus fibrosus cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_rings_of_heart, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anulus fibrosus cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_rings_of_heart ] + * aortic annulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_rings_of_heart ] + * atrioventricular ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003628 ] + * coronary tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003628 ] + * fibrous ring of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_rings_of_heart ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [annulus fibrosus](../../UBERON/44/UBERON_0006444.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006108.md b/md/UBERON/08/UBERON_0006108.md index a7ff3c10f0..6f02c29ce3 100644 --- a/md/UBERON/08/UBERON_0006108.md +++ b/md/UBERON/08/UBERON_0006108.md @@ -6,24 +6,24 @@ ## Synonyms - * CMA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2680] - * amygdalar corticomedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2680] - * corticomedial nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2680] - * corticomedial nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84015] - * corticomedial nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2680] - * corticomedial nuclei of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84015] - * pars corticomedialis (Corpus amygdaloideum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2680] - * set of corticomedial nuclei of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84015] - * corpus amygdaloideum pars corticomedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:238[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus amygdaloideum pars olfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:238[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * CMA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2680 ] + * amygdalar corticomedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2680 ] + * corticomedial nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2680 ] + * corticomedial nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84015 ] + * corticomedial nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2680 ] + * corticomedial nuclei of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84015 ] + * pars corticomedialis (Corpus amygdaloideum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2680 ] + * set of corticomedial nuclei of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84015 ] + * corpus amygdaloideum pars corticomedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:238, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus amygdaloideum pars olfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:238, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:CMA * FMA:84015 * NIF_GrossAnatomy:birnlex_2680 - * NeuroNames:238 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2680] - * UMLS:C0175214 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2680] + * NeuroNames:238 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2680 ] + * UMLS:C0175214 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2680 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006208.md b/md/UBERON/08/UBERON_0006208.md index 3cc4266e03..f7ae756ac9 100644 --- a/md/UBERON/08/UBERON_0006208.md +++ b/md/UBERON/08/UBERON_0006208.md @@ -6,7 +6,7 @@ ## Synonyms - * auditory tubercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001364[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * auditory tubercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001364, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * auricular hillock ## Cross-references @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[inferred][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006308.md b/md/UBERON/08/UBERON_0006308.md index abc33f2e58..9f11a6eb9a 100644 --- a/md/UBERON/08/UBERON_0006308.md +++ b/md/UBERON/08/UBERON_0006308.md @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006508.md b/md/UBERON/08/UBERON_0006508.md index 4153b41d2f..c57480d96f 100644 --- a/md/UBERON/08/UBERON_0006508.md +++ b/md/UBERON/08/UBERON_0006508.md @@ -6,10 +6,10 @@ ## Synonyms - * interosseus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002302] + * interosseus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002302 ] * m. interosseous * interosseous - * interossei [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * interossei [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006608.md b/md/UBERON/08/UBERON_0006608.md index cbda46947c..aef64ae4d9 100644 --- a/md/UBERON/08/UBERON_0006608.md +++ b/md/UBERON/08/UBERON_0006608.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006608 * *Label* = corpus cavernosum clitoridis - * *Definition* = The corpus cavernosum clitoridis is one of a pair of sponge-like regions of erectile tissue which contain most of the blood in the clitoris during clitoral erection. This is homologous to the corpus cavernosum penis in the male; the body of the clitoris contains erectile tissue in a pair of corpora cavernosa (literally 'cave-like bodies'), with a recognisably similar structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_cavernosum_of_clitoris] + * *Definition* = The corpus cavernosum clitoridis is one of a pair of sponge-like regions of erectile tissue which contain most of the blood in the clitoris during clitoral erection. This is homologous to the corpus cavernosum penis in the male; the body of the clitoris contains erectile tissue in a pair of corpora cavernosa (literally 'cave-like bodies'), with a recognisably similar structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_cavernosum_of_clitoris ] ## Synonyms - * corpus cavernosum of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20172] - * cavernous body of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002018] - * clitoral corpus cavernosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002018] - * corpus cavernosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002018] - * corpus cavernosum clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_cavernosum_of_clitoris[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus cavernosum of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20172 ] + * cavernous body of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002018 ] + * clitoral corpus cavernosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002018 ] + * corpus cavernosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002018 ] + * corpus cavernosum clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_cavernosum_of_clitoris, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [corpus cavernosum](../../UBERON/09/UBERON_0006609.md) and [part_of](../../BFO/50/BFO_0000050.md) some [clitoris](../../UBERON/11/UBERON_0002411.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0006908.md b/md/UBERON/08/UBERON_0006908.md index c3678c7234..7cc44aa147 100644 --- a/md/UBERON/08/UBERON_0006908.md +++ b/md/UBERON/08/UBERON_0006908.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006908 * *Label* = fast muscle tissue - * *Definition* = The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002318] + * *Definition* = The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002318 ] * *Comment* = The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992) ## Synonyms - * fast muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002318] + * fast muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002318 ] * fast skeletal muscle tissue - * white muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002318] + * white muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002318 ] ## Cross-references * BTO:0002318 - * UMLS:C0242873 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_Fibers_Fast-Twitch] + * UMLS:C0242873 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_Fibers_Fast-Twitch ] * ncithesaurus:Muscle_Fibers_Fast-Twitch ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [fast muscle cell](../../CL/90/CL_0000190.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0007108.md b/md/UBERON/08/UBERON_0007108.md index dac9c730b3..08f3274f75 100644 --- a/md/UBERON/08/UBERON_0007108.md +++ b/md/UBERON/08/UBERON_0007108.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007108 * *Label* = vernix caseosa - * *Definition* = An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.200.946[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vernix_caseosa] + * *Definition* = An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.200.946, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vernix_caseosa ] ## Synonyms * vernix - * vernix caseosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.200.946] + * vernix caseosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.200.946 ] ## Cross-references * GAID:1174 * MESH:A12.200.946 - * UMLS:C0042541 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vernix_Caseosa] + * UMLS:C0042541 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vernix_Caseosa ] * Wikipedia:Vernix_caseosa * ncithesaurus:Vernix_Caseosa @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0007308.md b/md/UBERON/08/UBERON_0007308.md index 7c81b78bb3..781ea8dac2 100644 --- a/md/UBERON/08/UBERON_0007308.md +++ b/md/UBERON/08/UBERON_0007308.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007308 * *Label* = pronephric distal early tubule - * *Definition* = A distal early tubule that is part of a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal early tubule that is part of a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal early tubule](../../UBERON/37/UBERON_0006337.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0007808.md b/md/UBERON/08/UBERON_0007808.md index 470ffb83c2..b1748e76ea 100644 --- a/md/UBERON/08/UBERON_0007808.md +++ b/md/UBERON/08/UBERON_0007808.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007808 * *Label* = adipose tissue of abdominal region - * *Definition* = Adipose tissue that is located in the abdominal region. This includes any subcutaneous fat, visceral fat or encapsulated adipose tissue depots. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:paula[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/259] + * *Definition* = Adipose tissue that is located in the abdominal region. This includes any subcutaneous fat, visceral fat or encapsulated adipose tissue depots. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:paula, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/259 ] ## Synonyms - * abdominal adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] - * abdominal fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] - * intra-abdominal fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] + * abdominal adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] + * abdominal fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] + * intra-abdominal fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0008408.md b/md/UBERON/08/UBERON_0008408.md index 3a52a699c1..64b24578b9 100644 --- a/md/UBERON/08/UBERON_0008408.md +++ b/md/UBERON/08/UBERON_0008408.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008408 * *Label* = distal tubular epithelium - * *Definition* = An epithelium that is part of a distal tubule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a distal tubule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal tubule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003948] + * distal tubule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003948 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal tubule](../../UBERON/35/UBERON_0004135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0008608.md b/md/UBERON/08/UBERON_0008608.md index 350ff554ce..1816c0079e 100644 --- a/md/UBERON/08/UBERON_0008608.md +++ b/md/UBERON/08/UBERON_0008608.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008608 * *Label* = oblique muscle of auricle - * *Definition* = The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_muscle_of_auricle] + * *Definition* = The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_muscle_of_auricle ] ## Synonyms - * oblique muscle of pinna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48986] - * obliquus auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_muscle_of_auricle] - * obliquus auricularis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:48986] - * musculus obliquus auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_muscle_of_auricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * obliquus auricul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_muscle_of_auricle] + * oblique muscle of pinna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48986 ] + * obliquus auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_muscle_of_auricle ] + * obliquus auricularis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:48986 ] + * musculus obliquus auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_muscle_of_auricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * obliquus auricul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_muscle_of_auricle ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0008808.md b/md/UBERON/08/UBERON_0008808.md index 58600313b8..04bd383a70 100644 --- a/md/UBERON/08/UBERON_0008808.md +++ b/md/UBERON/08/UBERON_0008808.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0009708.md b/md/UBERON/08/UBERON_0009708.md index e3a24fbf3f..0bb16f6a9c 100644 --- a/md/UBERON/08/UBERON_0009708.md +++ b/md/UBERON/08/UBERON_0009708.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0009908.md b/md/UBERON/08/UBERON_0009908.md index 6ba3aafc22..248efb5f2e 100644 --- a/md/UBERON/08/UBERON_0009908.md +++ b/md/UBERON/08/UBERON_0009908.md @@ -6,7 +6,7 @@ ## Synonyms - * radix caudalis nervi abducentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000179] + * radix caudalis nervi abducentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000179 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0010008.md b/md/UBERON/08/UBERON_0010008.md index 0f75df6107..ca1ab4efb2 100644 --- a/md/UBERON/08/UBERON_0010008.md +++ b/md/UBERON/08/UBERON_0010008.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010008 * *Label* = mammalian cotyledon - * *Definition* = Round structure consisting of chorionic villi[PMID]. A separations of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19829370[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Placental_cotyledon] + * *Definition* = Round structure consisting of chorionic villi[PMID]. A separations of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19829370, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Placental_cotyledon ] * *Comment* = Rodents have a single cotyledon (called a discoid placenta), whereas humans have multiple cotyledons, although they are consolidated into a cluster that resembles a single disc[PMID:19829370] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references - * UMLS:C0242769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cotyledon] + * UMLS:C0242769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cotyledon ] * Wikipedia:Placental_cotyledon * http://upload.wikimedia.org/wikipedia/commons/3/30/Placental_cotyledon.png * ncithesaurus:Cotyledon @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0010308.md b/md/UBERON/08/UBERON_0010308.md index f04b35376b..4a17a6a3ed 100644 --- a/md/UBERON/08/UBERON_0010308.md +++ b/md/UBERON/08/UBERON_0010308.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010308 * *Label* = os opticus - * *Definition* = Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * *Definition* = Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] * *Comment* = Taxon notes: At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus ## Synonyms - * Gemminger's ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] - * os nervi optici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * Gemminger's ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] + * os nervi optici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0010408.md b/md/UBERON/08/UBERON_0010408.md index 7d61f2a15b..662feb2eb7 100644 --- a/md/UBERON/08/UBERON_0010408.md +++ b/md/UBERON/08/UBERON_0010408.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010408 * *Label* = ocular angle artery - * *Definition* = The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * angular artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49583] + * angular artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49583 ] ## Cross-references * FMA:49583 * MA:0002010 * SCTID:145238006 - * UMLS:C0226116 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Angular_Artery] + * UMLS:C0226116 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Angular_Artery ] * ncithesaurus:Angular_Artery ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010408 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0010708.md b/md/UBERON/08/UBERON_0010708.md index 2ca66462e8..1699783b51 100644 --- a/md/UBERON/08/UBERON_0010708.md +++ b/md/UBERON/08/UBERON_0010708.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010708 * *Label* = pectoral complex - * *Definition* = Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000213] + * *Definition* = Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000213 ] * *Comment* = AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region) ## Synonyms - * pectoral appendage/girdle complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000213] - * pectoral girdle plus anterior limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pectoral girdle plus pectoral limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7183[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pectoral appendage/girdle complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000213 ] + * pectoral girdle plus anterior limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pectoral girdle plus pectoral limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7183, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage girdle complex](../../UBERON/07/UBERON_0010707.md) and [has_part](../../BFO/51/BFO_0000051.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Appendage girdle complex that when present, encompasses the pectoral appendage and half of the pectoral girdle.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0010908.md b/md/UBERON/08/UBERON_0010908.md index 00ff012e43..14ef995484 100644 --- a/md/UBERON/08/UBERON_0010908.md +++ b/md/UBERON/08/UBERON_0010908.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010908 * *Label* = paraglossale - * *Definition* = in the avian hyoid apparatus, the arrowhead-shaped bone which forms the base of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryP.html#P] + * *Definition* = in the avian hyoid apparatus, the arrowhead-shaped bone which forms the base of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryP.html#P ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011108.md b/md/UBERON/08/UBERON_0011108.md index 7bc613f0e0..fb875b4264 100644 --- a/md/UBERON/08/UBERON_0011108.md +++ b/md/UBERON/08/UBERON_0011108.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011108 * *Label* = synovial joint of pectoral girdle - * *Definition* = A synovial joint that is part of a pectoral girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A synovial joint that is part of a pectoral girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: in FMA, these are part of the bony pectoral girdle ## Synonyms - * pectoral girdle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35243] + * pectoral girdle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35243 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) and [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011208.md b/md/UBERON/08/UBERON_0011208.md index ded92e83cf..bbbeabe946 100644 --- a/md/UBERON/08/UBERON_0011208.md +++ b/md/UBERON/08/UBERON_0011208.md @@ -6,7 +6,7 @@ ## Synonyms - * medial migration pathway mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000786] + * medial migration pathway mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000786 ] * medial migration pathway ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011308.md b/md/UBERON/08/UBERON_0011308.md index 2fc85025ed..c87f553fe0 100644 --- a/md/UBERON/08/UBERON_0011308.md +++ b/md/UBERON/08/UBERON_0011308.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011308 * *Label* = pars reflexa of masseter - * *Definition* = The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * *Definition* = The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Synonyms - * masseter, pars reflexa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * pars reflexa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * masseter, pars reflexa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * pars reflexa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011508.md b/md/UBERON/08/UBERON_0011508.md index 4462f5575c..e880ae6f87 100644 --- a/md/UBERON/08/UBERON_0011508.md +++ b/md/UBERON/08/UBERON_0011508.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011508 * *Label* = sphincter colli superficialis muscle - * *Definition* = The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://de.wikipedia.org/wiki/Platysma] + * *Definition* = The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://de.wikipedia.org/wiki/Platysma ] ## Synonyms * M. sphincter colli superficialis - * sphincter colli superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002380] + * sphincter colli superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002380 ] ## Cross-references @@ -33,8 +33,9 @@ * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9989 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9975 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011608.md b/md/UBERON/08/UBERON_0011608.md index 283de8c7c9..341e815acd 100644 --- a/md/UBERON/08/UBERON_0011608.md +++ b/md/UBERON/08/UBERON_0011608.md @@ -3,13 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011608 * *Label* = hyomandibular element - * *Definition* = the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] + * *Definition* = the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula ] ## Synonyms - * hyomandibula - stapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000688] + * hyomandibula - stapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000688 ] * hyomandibula element - * epihyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * epihyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * hyomandibula ## Cross-references @@ -22,7 +23,7 @@ ## Superclasses * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [replacement element](../../UBERON/22/UBERON_0010522.md) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal hyoid arch skeleton](../../UBERON/52/UBERON_0011152.md) ## Equivalencies @@ -42,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011808.md b/md/UBERON/08/UBERON_0011808.md index 665e88c40f..2be2db8fc4 100644 --- a/md/UBERON/08/UBERON_0011808.md +++ b/md/UBERON/08/UBERON_0011808.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011808 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0011908.md b/md/UBERON/08/UBERON_0011908.md index 0a838fcd98..79e0d3fc76 100644 --- a/md/UBERON/08/UBERON_0011908.md +++ b/md/UBERON/08/UBERON_0011908.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011908 * *Label* = gastrocnemius lateralis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Mammalian gastrocnemius lateralis, soleus and plantaris arise from reptilian gastrocnemius externus[Kardong] ## Synonyms - * caput laterale (musculus gastrocnemius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45959] - * lateral head of gastrocnemius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45959] + * caput laterale (musculus gastrocnemius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45959 ] + * lateral head of gastrocnemius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45959 ] * lateral head of gastrocnemius muscle ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0012108.md b/md/UBERON/08/UBERON_0012108.md index 4318fb36a7..b0dfdfd7be 100644 --- a/md/UBERON/08/UBERON_0012108.md +++ b/md/UBERON/08/UBERON_0012108.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012108 * *Label* = postorbital bar - * *Definition* = A strut formed from the union of the zygomatic process of the frontal bone with the frontal process of the zygomatic bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1580[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postorbital_Bar] + * *Definition* = A strut formed from the union of the zygomatic process of the frontal bone with the frontal process of the zygomatic bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1580, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postorbital_Bar ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0012308.md b/md/UBERON/08/UBERON_0012308.md index ee1a9534e2..e291dbd5d2 100644 --- a/md/UBERON/08/UBERON_0012308.md +++ b/md/UBERON/08/UBERON_0012308.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012308 * *Label* = superficial lateral cervical lymph node - * *Definition* = The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_lateral_cervical_lymph_nodes] + * *Definition* = The superficial lateral cervical lymph nodes are found in proximity to the external jugular vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_lateral_cervical_lymph_nodes ] ## Synonyms - * superficial lateral cervical node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12769] + * superficial lateral cervical node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12769 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012308 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0013208.md b/md/UBERON/08/UBERON_0013208.md index aa01333dca..6fa58f537f 100644 --- a/md/UBERON/08/UBERON_0013208.md +++ b/md/UBERON/08/UBERON_0013208.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013208 * *Label* = Grueneberg ganglion - * *Definition* = An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gr%C3%BCneberg_ganglion] + * *Definition* = An olfactory ganglion at the entrance of the nose of mammals that is involved in the detection of alarm pheromones and cold temperatures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gr%C3%BCneberg_ganglion ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013208 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0013508.md b/md/UBERON/08/UBERON_0013508.md index 30379c5c82..eb9a281fe8 100644 --- a/md/UBERON/08/UBERON_0013508.md +++ b/md/UBERON/08/UBERON_0013508.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0013608.md b/md/UBERON/08/UBERON_0013608.md index 20f32d1621..c4cc668d0d 100644 --- a/md/UBERON/08/UBERON_0013608.md +++ b/md/UBERON/08/UBERON_0013608.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0013708.md b/md/UBERON/08/UBERON_0013708.md index 0161d46bea..767c15c911 100644 --- a/md/UBERON/08/UBERON_0013708.md +++ b/md/UBERON/08/UBERON_0013708.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013708 * *Label* = anterior superior iliac spine - * *Definition* = The anterior superior iliac spine (ASIS) is an important landmark of surface anatomy. It refers to the anterior extremity of the iliac crest of the pelvis, which provides attachment for the inguinal ligament, the sartorius muscle, and the tensor fasciae latae. ASIS provides a clue in identifying some other clinical landmarks, including: McBurney's point Gardner's line Roser-NC)laton line A - Anterior (front, like the face) S - Superior (towards the head, opposite to feet) I - Iliac S - Spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_superior_iliac_spine] + * *Definition* = The anterior superior iliac spine (ASIS) is an important landmark of surface anatomy. It refers to the anterior extremity of the iliac crest of the pelvis, which provides attachment for the inguinal ligament, the sartorius muscle, and the tensor fasciae latae. ASIS provides a clue in identifying some other clinical landmarks, including: McBurney's point Gardner's line Roser-NC)laton line A - Anterior (front, like the face) S - Superior (towards the head, opposite to feet) I - Iliac S - Spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_superior_iliac_spine ] ## Synonyms - * anterior superior iliac spine (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49465] - * anterior superior iliac spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_superior_iliac_spine] - * anterior superior spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_superior_iliac_spine] + * anterior superior iliac spine (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49465 ] + * anterior superior iliac spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_superior_iliac_spine ] + * anterior superior spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_superior_iliac_spine ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0014508.md b/md/UBERON/08/UBERON_0014508.md index f784618132..0e5a7f09f0 100644 --- a/md/UBERON/08/UBERON_0014508.md +++ b/md/UBERON/08/UBERON_0014508.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014508 * *Label* = distal interphalangeal joint of manual digit 3 - * *Definition* = A distal inter-phalangeal joint that is part of the 3rd manual digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal inter-phalangeal joint that is part of the 3rd manual digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * distal interphalangeal joint of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35337] - * equine distal interphalangeal joint of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine second interphalangeal joint of forelimb digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * forelimb coffin joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * distal interphalangeal joint of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35337 ] + * equine distal interphalangeal joint of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine second interphalangeal joint of forelimb digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * forelimb coffin joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014508 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0014608.md b/md/UBERON/08/UBERON_0014608.md index c25ed5b188..70e9ad5d8e 100644 --- a/md/UBERON/08/UBERON_0014608.md +++ b/md/UBERON/08/UBERON_0014608.md @@ -6,18 +6,18 @@ ## Synonyms - * inferior occipital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1399[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * gyrus occipitalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:156[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus occipitalis tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:156[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior occipital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1399, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * gyrus occipitalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:156, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus occipitalis tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:156, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:IOG * BAMS:O3 * NIF_GrossAnatomy:birnlex_1399 - * NeuroNames:156 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1399] + * NeuroNames:156 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1399 ] * SCTID:279183001 - * UMLS:C1110643 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1399] + * UMLS:C1110643 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1399 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014608 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0014708.md b/md/UBERON/08/UBERON_0014708.md index dce916f1f4..c6ebc0763e 100644 --- a/md/UBERON/08/UBERON_0014708.md +++ b/md/UBERON/08/UBERON_0014708.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014708 * *Label* = costal plate of carapace - * *Definition* = One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = One of a series of plates on each side of the carapace, forming two rows between the peripheral plates and the median neural plates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014708 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0014908.md b/md/UBERON/08/UBERON_0014908.md index 34c46be0b8..593b830aa3 100644 --- a/md/UBERON/08/UBERON_0014908.md +++ b/md/UBERON/08/UBERON_0014908.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014908 * *Label* = cerebellopontine angle - * *Definition* = Junction between the cerebellum and the pons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.132.810.428.200.462] + * *Definition* = Junction between the cerebellum and the pons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.132.810.428.200.462 ] ## Synonyms - * angulus cerebellopontinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:544[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebellopontile angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.132.810.428.200.462] - * cerebellopontine angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.132.810.428.200.462] - * cerebellopontine angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:544] + * angulus cerebellopontinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:544, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebellopontile angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.132.810.428.200.462 ] + * cerebellopontine angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.132.810.428.200.462 ] + * cerebellopontine angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:544 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014908 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0015008.md b/md/UBERON/08/UBERON_0015008.md index 7a498fe85c..8c48cb7fbc 100644 --- a/md/UBERON/08/UBERON_0015008.md +++ b/md/UBERON/08/UBERON_0015008.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015008 * *Label* = thoracic vertebra endochondral element - * *Definition* = A thoracic vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A thoracic vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * thoracic vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * thoracic vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * thoracic vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * thoracic vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [thoracic vertebra cartilage element](../../UBERON/07/UBERON_0013507.md)or[thoracic vertebra pre-cartilage condensation](../../UBERON/08/UBERON_0013508.md)or[thoracic vertebra](../../UBERON/47/UBERON_0002347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_0015108.md b/md/UBERON/08/UBERON_0015108.md index 09d79cdad3..919b6440b5 100644 --- a/md/UBERON/08/UBERON_0015108.md +++ b/md/UBERON/08/UBERON_0015108.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015108 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_1000008.md b/md/UBERON/08/UBERON_1000008.md index 4e41b75ac1..c44cafce3c 100644 --- a/md/UBERON/08/UBERON_1000008.md +++ b/md/UBERON/08/UBERON_1000008.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000008 * *Label* = left part of face - * *Definition* = Subdivision of the head consisting of the left half of the face, vertically divided. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the left half of the face, vertically divided. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000008 + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_1500008.md b/md/UBERON/08/UBERON_1500008.md index d52d4aa3df..7648332e44 100644 --- a/md/UBERON/08/UBERON_1500008.md +++ b/md/UBERON/08/UBERON_1500008.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pelvic fin distal radial element](../../UBERON/08/UBERON_1600008.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_1600008.md b/md/UBERON/08/UBERON_1600008.md index 422418d56f..9728ad6912 100644 --- a/md/UBERON/08/UBERON_1600008.md +++ b/md/UBERON/08/UBERON_1600008.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2000408.md b/md/UBERON/08/UBERON_2000408.md index 011f8e5a95..18e10ae94e 100644 --- a/md/UBERON/08/UBERON_2000408.md +++ b/md/UBERON/08/UBERON_2000408.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2000508.md b/md/UBERON/08/UBERON_2000508.md index e8a4ac164b..8600d4cde7 100644 --- a/md/UBERON/08/UBERON_2000508.md +++ b/md/UBERON/08/UBERON_2000508.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000508 * *Label* = pelvic fin radial bone - * *Definition* = pelvic fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pelvic actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] - * pelvic radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] + * pelvic actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] + * pelvic radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] ## Cross-references @@ -27,14 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pelvic fin radial element](../../UBERON/08/UBERON_2100508.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2000608.md b/md/UBERON/08/UBERON_2000608.md index 8a400c93f8..fb28cc582f 100644 --- a/md/UBERON/08/UBERON_2000608.md +++ b/md/UBERON/08/UBERON_2000608.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2000708.md b/md/UBERON/08/UBERON_2000708.md index b129b93e8b..b3328f2216 100644 --- a/md/UBERON/08/UBERON_2000708.md +++ b/md/UBERON/08/UBERON_2000708.md @@ -28,8 +28,10 @@ Not clear that directional labels for optic tract parts are consistent across ta ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_2000808.md b/md/UBERON/08/UBERON_2000808.md index 14911db668..8d29426e9b 100644 --- a/md/UBERON/08/UBERON_2000808.md +++ b/md/UBERON/08/UBERON_2000808.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000808 * *Label* = myotome somite 29 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001008.md b/md/UBERON/08/UBERON_2001008.md index 90dcde1700..7bb55ccecd 100644 --- a/md/UBERON/08/UBERON_2001008.md +++ b/md/UBERON/08/UBERON_2001008.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001008[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001008, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_2001408.md b/md/UBERON/08/UBERON_2001408.md index f6533f14d1..72d6ec8125 100644 --- a/md/UBERON/08/UBERON_2001408.md +++ b/md/UBERON/08/UBERON_2001408.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001408 * *Label* = infraorbital 3 - * *Definition* = Infraorbital that is the third bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Infraorbital that is the third bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001508.md b/md/UBERON/08/UBERON_2001508.md index 3f9ea42d1d..5719c0595b 100644 --- a/md/UBERON/08/UBERON_2001508.md +++ b/md/UBERON/08/UBERON_2001508.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001508 * *Label* = trabecula communis - * *Definition* = Cartilage formed via medial fusion between bilaterally paired trabecula crani. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cartilage formed via medial fusion between bilaterally paired trabecula crani. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001608.md b/md/UBERON/08/UBERON_2001608.md index c24d0276b5..e6cbee2000 100644 --- a/md/UBERON/08/UBERON_2001608.md +++ b/md/UBERON/08/UBERON_2001608.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001608 * *Label* = autopalatine-lateral ethmoid joint - * *Definition* = Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [autopalatine](../../UBERON/20/UBERON_2000620.md) and [core#connects](../../ts/core#connects.md) some [lateral ethmoid](../../UBERON/26/UBERON_2000226.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001708.md b/md/UBERON/08/UBERON_2001708.md index edb41cc535..f9a2e5f2d4 100644 --- a/md/UBERON/08/UBERON_2001708.md +++ b/md/UBERON/08/UBERON_2001708.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001708 * *Label* = dermosphenotic - * *Definition* = Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infraorbital 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001708] - * infraorbital 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001708] - * infraorbital 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001708] - * infraorbital 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001708] + * infraorbital 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001708 ] + * infraorbital 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001708 ] + * infraorbital 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001708 ] + * infraorbital 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001708 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001808.md b/md/UBERON/08/UBERON_2001808.md index 59a67a3581..a8ac226ecf 100644 --- a/md/UBERON/08/UBERON_2001808.md +++ b/md/UBERON/08/UBERON_2001808.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001808 * *Label* = facial foramen - * *Definition* = Foramen through which cranial nerve VII (facial) exits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen through which cranial nerve VII (facial) exits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = This is the anterior opening of the trigeminofacialis (or trigeminal-facialis) chamber. ## Synonyms - * anterior opening trigeminofacialis chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001808] + * anterior opening trigeminofacialis chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001808 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2001908.md b/md/UBERON/08/UBERON_2001908.md index 8c28b65494..b80ecae37d 100644 --- a/md/UBERON/08/UBERON_2001908.md +++ b/md/UBERON/08/UBERON_2001908.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2002008.md b/md/UBERON/08/UBERON_2002008.md index 552c2b1fd7..34a35c6f26 100644 --- a/md/UBERON/08/UBERON_2002008.md +++ b/md/UBERON/08/UBERON_2002008.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002008 * *Label* = neural lamina - * *Definition* = Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2002108.md b/md/UBERON/08/UBERON_2002108.md index 69fd8f905a..cdbba2a075 100644 --- a/md/UBERON/08/UBERON_2002108.md +++ b/md/UBERON/08/UBERON_2002108.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002108 * *Label* = buccal papilla - * *Definition* = Papilla that is part of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Papilla that is part of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2002208.md b/md/UBERON/08/UBERON_2002208.md index 63752a0a1f..3312be974e 100644 --- a/md/UBERON/08/UBERON_2002208.md +++ b/md/UBERON/08/UBERON_2002208.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002208 * *Label* = obsolete mesonephric podocyte - * *Definition* = Podocyte that is part of the kidney (mesonephros). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Podocyte that is part of the kidney (mesonephros). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_2005208.md b/md/UBERON/08/UBERON_2005208.md index 56f8c99e12..6e806f4e91 100644 --- a/md/UBERON/08/UBERON_2005208.md +++ b/md/UBERON/08/UBERON_2005208.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral medial 3 medial interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005208] + * rostral medial 3 medial interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005208 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_2007008.md b/md/UBERON/08/UBERON_2007008.md index bae03b0ea7..9aaeacbf1b 100644 --- a/md/UBERON/08/UBERON_2007008.md +++ b/md/UBERON/08/UBERON_2007008.md @@ -6,7 +6,7 @@ ## Synonyms - * ventral intermandibulari anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007008[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ventral intermandibulari anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007008, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2100508.md b/md/UBERON/08/UBERON_2100508.md index 25d6a5593a..b0cacbcf80 100644 --- a/md/UBERON/08/UBERON_2100508.md +++ b/md/UBERON/08/UBERON_2100508.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100508 * *Label* = pelvic fin radial element - * *Definition* = Pelvic fin radial elements are internal skeletal supports of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pelvic fin radial elements are internal skeletal supports of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pelvic actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] - * pelvic radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] + * pelvic actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] + * pelvic radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_2200508.md b/md/UBERON/08/UBERON_2200508.md index 674abbe11b..6ad27ec98f 100644 --- a/md/UBERON/08/UBERON_2200508.md +++ b/md/UBERON/08/UBERON_2200508.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200508 * *Label* = obsolete pelvic fin radial cartilage - * *Definition* = pelvic fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pelvic actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] - * pelvic radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000508] + * pelvic actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] + * pelvic radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000508 ] ## Cross-references @@ -27,8 +27,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_3000208.md b/md/UBERON/08/UBERON_3000208.md index 69b725e8c2..ddf1b70ec1 100644 --- a/md/UBERON/08/UBERON_3000208.md +++ b/md/UBERON/08/UBERON_3000208.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_3000408.md b/md/UBERON/08/UBERON_3000408.md index 0d41013fe0..e716ac9de1 100644 --- a/md/UBERON/08/UBERON_3000408.md +++ b/md/UBERON/08/UBERON_3000408.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_3000808.md b/md/UBERON/08/UBERON_3000808.md index 1ea814f469..a5ec2c818c 100644 --- a/md/UBERON/08/UBERON_3000808.md +++ b/md/UBERON/08/UBERON_3000808.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000808 * *Label* = parasagittal processes - * *Definition* = Paired, posteriorly directed process at the posterior margin of each neural arch lamina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Cannatella_1985] + * *Definition* = Paired, posteriorly directed process at the posterior margin of each neural arch lamina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Cannatella_1985 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_3000908.md b/md/UBERON/08/UBERON_3000908.md index eb77bb5e27..d921945e22 100644 --- a/md/UBERON/08/UBERON_3000908.md +++ b/md/UBERON/08/UBERON_3000908.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000908 * *Label* = sulcus distalis ossis cruris - * *Definition* = In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_3001008.md b/md/UBERON/08/UBERON_3001008.md index ae524a1487..be09e75442 100644 --- a/md/UBERON/08/UBERON_3001008.md +++ b/md/UBERON/08/UBERON_3001008.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_3010308.md b/md/UBERON/08/UBERON_3010308.md index 559f296695..b1357a2011 100644 --- a/md/UBERON/08/UBERON_3010308.md +++ b/md/UBERON/08/UBERON_3010308.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010308 * *Label* = obsolete lymphocyte - * *Definition* = A cell of the B cell, T cell, or natural killer cell lineage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A cell of the B cell, T cell, or natural killer cell lineage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000542 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_3010708.md b/md/UBERON/08/UBERON_3010708.md index ff4d423ed2..e1468573b6 100644 --- a/md/UBERON/08/UBERON_3010708.md +++ b/md/UBERON/08/UBERON_3010708.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010708 * *Label* = levator mandibulae articularis - * *Definition* = Muscle which is responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Muscle which is responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms - * m. adductor mandibulae anterior articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010708] - * m. adductor mandibulae externus minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010708] - * m. adductor mandibulae posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010708] - * m. adductor mandibulae posterior articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010708] + * m. adductor mandibulae anterior articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010708 ] + * m. adductor mandibulae externus minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010708 ] + * m. adductor mandibulae posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010708 ] + * m. adductor mandibulae posterior articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010708 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_3011108.md b/md/UBERON/08/UBERON_3011108.md index 3c4e6ca13b..d594447c51 100644 --- a/md/UBERON/08/UBERON_3011108.md +++ b/md/UBERON/08/UBERON_3011108.md @@ -6,7 +6,7 @@ ## Synonyms - * tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3011108] + * tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3011108 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002364 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/08/UBERON_4000108.md b/md/UBERON/08/UBERON_4000108.md index dfb15f0635..b6964b011f 100644 --- a/md/UBERON/08/UBERON_4000108.md +++ b/md/UBERON/08/UBERON_4000108.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000108 * *Label* = non-mineralized hyaline cartilage tissue - * *Definition* = Hyaline cartilage tissue that is not mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Hyaline cartilage tissue that is not mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_4100008.md b/md/UBERON/08/UBERON_4100008.md index f81327dc81..f872c8f626 100644 --- a/md/UBERON/08/UBERON_4100008.md +++ b/md/UBERON/08/UBERON_4100008.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_4200008.md b/md/UBERON/08/UBERON_4200008.md index 7e44c14a26..914cc755fe 100644 --- a/md/UBERON/08/UBERON_4200008.md +++ b/md/UBERON/08/UBERON_4200008.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_4200108.md b/md/UBERON/08/UBERON_4200108.md index e75cb9cdb2..fe2965b164 100644 --- a/md/UBERON/08/UBERON_4200108.md +++ b/md/UBERON/08/UBERON_4200108.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_4300008.md b/md/UBERON/08/UBERON_4300008.md index b63b56fed3..19dfb0b80e 100644 --- a/md/UBERON/08/UBERON_4300008.md +++ b/md/UBERON/08/UBERON_4300008.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/08/UBERON_4440008.md b/md/UBERON/08/UBERON_4440008.md index f9e4869631..c920cfb8ed 100644 --- a/md/UBERON/08/UBERON_4440008.md +++ b/md/UBERON/08/UBERON_4440008.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0000009.md b/md/UBERON/09/UBERON_0000009.md index a0199c74a3..a000bc94f4 100644 --- a/md/UBERON/09/UBERON_0000009.md +++ b/md/UBERON/09/UBERON_0000009.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000009 * *Label* = submucosa - * *Definition* = A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submucosa] + * *Definition* = A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submucosa ] ## Synonyms - * organ submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85391] - * region of submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85392] - * submucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85391] - * submucosa of region of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85392] - * submucous layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002107] - * tela submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002107] + * organ submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85391 ] + * region of submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85392 ] + * submucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85391 ] + * submucosa of region of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85392 ] + * submucous layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002107 ] + * tela submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002107 ] * tunica submucosa ## Cross-references @@ -21,7 +21,7 @@ * FMA:85391 * FMA:85392 * SCTID:68439008 - * UMLS:C0225344 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submucosa] + * UMLS:C0225344 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submucosa ] * Wikipedia:Submucosa * http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png * http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png @@ -45,8 +45,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = submucosal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0000109.md b/md/UBERON/09/UBERON_0000109.md index 5fa9d6d983..68689f478f 100644 --- a/md/UBERON/09/UBERON_0000109.md +++ b/md/UBERON/09/UBERON_0000109.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000109 * *Label* = gastrula stage - * *Definition* = A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007369] + * *Definition* = A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007369 ] ## Synonyms - * blastocystis trilaminaris stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar blastocyst stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar blastoderm stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar disk stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar germ stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * blastocystis trilaminaris stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar blastocyst stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar blastoderm stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar disk stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar germ stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0000209.md b/md/UBERON/09/UBERON_0000209.md index 12599a4320..3c8ef70fa1 100644 --- a/md/UBERON/09/UBERON_0000209.md +++ b/md/UBERON/09/UBERON_0000209.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000209 * *Label* = tetrapod frontal bone - * *Definition* = In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_bone] + * *Definition* = In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_bone ] * *Comment* = Taxon notes: fused in humans, paired in other animals Development notes: In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993). ## Synonyms - * frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000206] - * frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52734[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001466[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * os frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * os frontale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000206 ] + * frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52734, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001466, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * os frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * os frontale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0001466 * MESH:A02.835.232.781.375 * SCTID:181793006 - * UMLS:C0016732 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Bone] + * UMLS:C0016732 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Bone ] * VHOG:0001324 * VSAO:0000208 * Wikipedia:Frontal_bone @@ -41,7 +41,7 @@ * [neurocranium bone](../../UBERON/64/UBERON_0011164.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Equivalencies @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0000309.md b/md/UBERON/09/UBERON_0000309.md index 0956018fb1..eaf7a2499d 100644 --- a/md/UBERON/09/UBERON_0000309.md +++ b/md/UBERON/09/UBERON_0000309.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000309 * *Label* = body wall - * *Definition* = the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003385] + * *Definition* = the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003385 ] ## Synonyms - * trunk wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10427] - * wall of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10427] - * Koerperwand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000139] + * trunk wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10427 ] + * wall of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10427 ] + * Koerperwand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000139 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0000409.md b/md/UBERON/09/UBERON_0000409.md index adba6d2a13..63cde9094c 100644 --- a/md/UBERON/09/UBERON_0000409.md +++ b/md/UBERON/09/UBERON_0000409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000409 * *Label* = serous gland - * *Definition* = A gland in which the principal secretory cells are serous secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = A gland in which the principal secretory cells are serous secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [has_part](../../BFO/51/BFO_0000051.md) some [serous secreting cell](../../CL/13/CL_0000313.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = glands that secrete watery albuminous material that often contains enzymes[MP:0008052]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001009.md b/md/UBERON/09/UBERON_0001009.md index b28840dfe5..56dab8e403 100644 --- a/md/UBERON/09/UBERON_0001009.md +++ b/md/UBERON/09/UBERON_0001009.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001009 * *Label* = circulatory system - * *Definition* = organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circulatory_system] + * *Definition* = organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circulatory_system ] * *Comment* = the cardiovascular system and the lymphatic system are parts of the circulatory system ## Synonyms - * systema cardiovasculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circulatory_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * systema cardiovasculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circulatory_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We should divest ourselves of the view that earlier vertebrate groups were 'on their way' to becoming mammals, as clearly they were not such visionaries. Neither were their systems 'imperfect' as earlier anatomists thought. Instead, their circulatory systems served them well to address the ecological demands arising from their lifestyles.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001109.md b/md/UBERON/09/UBERON_0001109.md index 17c3c228e6..5fd4310604 100644 --- a/md/UBERON/09/UBERON_0001109.md +++ b/md/UBERON/09/UBERON_0001109.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001109 * *Label* = sternothyroid muscle - * *Definition* = The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle] + * *Definition* = The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle ] * *Comment* = Action: draws larynx caudally ## Synonyms * sternothyroid - * musculus sternothyroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sterno-thyroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle] - * sternothyreoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sternothyreoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle] - * sternothyroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternothyroid_muscle] + * musculus sternothyroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sterno-thyroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle ] + * sternothyreoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sternothyreoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle ] + * sternothyroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternothyroid_muscle ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:13343 * MA:0002386 * SCTID:244831004 - * UMLS:C0224166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternothyroid] + * UMLS:C0224166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternothyroid ] * Wikipedia:Sternothyroid_muscle * http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001209.md b/md/UBERON/09/UBERON_0001209.md index 3854e283e3..b2d6f1f877 100644 --- a/md/UBERON/09/UBERON_0001209.md +++ b/md/UBERON/09/UBERON_0001209.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001209 * *Label* = serosa of large intestine - * *Definition* = A serous membrane that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check serosa/peritoneum ## Synonyms * large intestinal serosa * large intestine serosa - * large intestine serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * large intestine serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serous coat of large intestine - * serous membrane of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica serosa intestini crassi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14975[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * serous membrane of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica serosa intestini crassi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14975, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * visceral peritoneum of large intestine ## Cross-references * FMA:14975 * MA:0001546 - * UMLS:C1517727 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Serosal_Surface] + * UMLS:C1517727 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Serosal_Surface ] * ncithesaurus:Large_Intestinal_Serosal_Surface ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001309.md b/md/UBERON/09/UBERON_0001309.md index bb3cafa0c6..19a826fb0f 100644 --- a/md/UBERON/09/UBERON_0001309.md +++ b/md/UBERON/09/UBERON_0001309.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001309 * *Label* = internal iliac artery - * *Definition* = The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_iliac_artery] + * *Definition* = The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_iliac_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria iliaca interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_iliac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hypogastric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004667] + * arteria iliaca interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_iliac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hypogastric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004667 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:18808 * MA:0001974 * SCTID:181346001 - * UMLS:C0226364 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Iliac_Artery] + * UMLS:C0226364 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Iliac_Artery ] * Wikipedia:Internal_iliac_artery * galen:InternalIliacArtery * http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001409.md b/md/UBERON/09/UBERON_0001409.md index b048c3f0dc..99cbbe2d79 100644 --- a/md/UBERON/09/UBERON_0001409.md +++ b/md/UBERON/09/UBERON_0001409.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001409 * *Label* = semispinalis capitis - * *Definition* = The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebr, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] + * *Definition* = The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebr, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * biventer cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] - * complexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] - * complexus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] - * musculus semispinalis capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semispinales capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] - * semispinalis capitis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_capitis] + * biventer cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] + * complexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] + * complexus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] + * musculus semispinalis capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semispinales capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] + * semispinalis capitis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_capitis ] ## Cross-references * FMA:22830 * MA:0002372 * SCTID:244870005 - * UMLS:C0224318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semispinalis_Capitis] + * UMLS:C0224318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semispinalis_Capitis ] * Wikipedia:Semispinalis_capitis * http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001509.md b/md/UBERON/09/UBERON_0001509.md index 178e904774..927dcd4536 100644 --- a/md/UBERON/09/UBERON_0001509.md +++ b/md/UBERON/09/UBERON_0001509.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001509 * *Label* = triceps brachii - * *Definition* = The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_brachii_muscle] + * *Definition* = The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_brachii_muscle ] * *Comment* = Dorsal group derivative that acts on the forearm[Kardong] ## Synonyms - * triceps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002080] - * triceps brachii muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_brachii_muscle] - * musculus triceps brachii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_brachii_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triceps muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_brachii_muscle] + * triceps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002080 ] + * triceps brachii muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_brachii_muscle ] + * musculus triceps brachii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_brachii_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triceps muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_brachii_muscle ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:37688 * MA:0002399 * SCTID:181623009 - * UMLS:C0559502 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Triceps_Brachii] + * UMLS:C0559502 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Triceps_Brachii ] * VHOG:0000851 * Wikipedia:Triceps_brachii_muscle * http://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png @@ -53,8 +53,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001609.md b/md/UBERON/09/UBERON_0001609.md index 983c153e18..8a7ef0871c 100644 --- a/md/UBERON/09/UBERON_0001609.md +++ b/md/UBERON/09/UBERON_0001609.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001609 * *Label* = isthmus of thyroid gland - * *Definition* = The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_isthmus] + * *Definition* = The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_isthmus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,8 +11,8 @@ * isthmus glandulae thyroideae * thyroid gland isthmus * thyroid isthmus - * isthmus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000739] - * isthmus glandulae thyroideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_isthmus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * isthmus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000739 ] + * isthmus glandulae thyroideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_isthmus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0000727 * NeuroNames:2643 * SCTID:245539003 - * UMLS:C0229583 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Gland_Isthmus] + * UMLS:C0229583 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Gland_Isthmus ] * VHOG:0000739 * Wikipedia:Thyroid_isthmus * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals and in some reptiles, the thyroid is composed of two lobes connected by an isthmus; in birds and amphibians, the thyroid consists of two isolated lobes. (...) Despite these morphological differences, the ontogeny of the thyroid follows the same pattern in all vertebrates (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001709.md b/md/UBERON/09/UBERON_0001709.md index b52938b6c9..6816ac259e 100644 --- a/md/UBERON/09/UBERON_0001709.md +++ b/md/UBERON/09/UBERON_0001709.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001709 * *Label* = upper jaw region - * *Definition* = Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_jaw] + * *Definition* = Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_jaw ] * *Comment* = AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head. ## Synonyms - * maxillary part of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59399] + * maxillary part of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59399 ] * dorsal mandibular arch - * dorsal pharyngeal arch 1 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * palatoquadrate arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * dorsal pharyngeal arch 1 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * palatoquadrate arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * upper pharyngeal jaws ## Cross-references @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001809.md b/md/UBERON/09/UBERON_0001809.md index 8178c7ec83..e436b95912 100644 --- a/md/UBERON/09/UBERON_0001809.md +++ b/md/UBERON/09/UBERON_0001809.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001809 * *Label* = enteric ganglion - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Enteric_ganglia] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Enteric_ganglia ] ## Synonyms - * intramural ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5896] + * intramural ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5896 ] ## Cross-references * FMA:5896 * MA:0001144 - * UMLS:C0501399 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Enteric_Ganglion] + * UMLS:C0501399 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Enteric_Ganglion ] * Wikipedia:Enteric_ganglia * ncithesaurus:Enteric_Ganglion @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parasympathetic ganglion](../../UBERON/08/UBERON_0001808.md) and [part_of](../../BFO/50/BFO_0000050.md) some [enteric nervous system](../../UBERON/05/UBERON_0002005.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0001909.md b/md/UBERON/09/UBERON_0001909.md index c89a5e460a..5849fc6202 100644 --- a/md/UBERON/09/UBERON_0001909.md +++ b/md/UBERON/09/UBERON_0001909.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001909 * *Label* = habenular commissure - * *Definition* = The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenul (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tnia thalami). The trigonum habenul also contains groups of nerve cells termed the ganglion habenul. Fibers enter the trigonum habenul from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenul's fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenul from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Habenular_commissure] + * *Definition* = The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenul (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tnia thalami). The trigonum habenul also contains groups of nerve cells termed the ganglion habenul. Fibers enter the trigonum habenul from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenul's fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenul from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Habenular_commissure ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * commissura habenularum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Habenular_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura habenularum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000359] - * commissure habenularum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008231] - * hbc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1609[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Habenular commisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:hbc] - * commissura habenularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:299[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * habenular commissure (Haller) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:299] - * habenular commisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:hbc] + * commissura habenularum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Habenular_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura habenularum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000359 ] + * commissure habenularum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008231 ] + * hbc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1609, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Habenular commisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:hbc ] + * commissura habenularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:299, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * habenular commissure (Haller) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:299 ] + * habenular commisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:hbc ] ## Cross-references @@ -25,10 +25,10 @@ * BM:Die-Epi-HC * FMA:62048 * NIF_GrossAnatomy:birnlex_1609 - * NeuroNames:299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1609] + * NeuroNames:299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1609 ] * SCTID:279335009 * TAO:0000359 - * UMLS:C0152363 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1609] + * UMLS:C0152363 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1609 ] * Wikipedia:Habenular_commissure * ZFA:0000359 * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [habenular nucleus](../../UBERON/93/UBERON_0008993.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002009.md b/md/UBERON/09/UBERON_0002009.md index c2e4da6f01..7b5753f414 100644 --- a/md/UBERON/09/UBERON_0002009.md +++ b/md/UBERON/09/UBERON_0002009.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002009 * *Label* = pulmonary nerve plexus - * *Definition* = The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_plexus] + * *Definition* = The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_plexus ] ## Synonyms - * plexus pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6629[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pulmonary plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6629] - * plexus pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6629, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pulmonary plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6629 ] + * plexus pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002109.md b/md/UBERON/09/UBERON_0002109.md index 55aa998b31..01258192cf 100644 --- a/md/UBERON/09/UBERON_0002109.md +++ b/md/UBERON/09/UBERON_0002109.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002109 * *Label* = pair of nares - * *Definition* = Pair of nostrils. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nares] + * *Definition* = Pair of nostrils. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nares ] * *Comment* = Note this is a "set of anatomical planes" in FMA ## Synonyms @@ -12,7 +12,7 @@ * nostrils * pair of nostrils * nares - * set of nares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72005] + * set of nares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72005 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002209.md b/md/UBERON/09/UBERON_0002209.md index 337b384ea4..01ac452c2d 100644 --- a/md/UBERON/09/UBERON_0002209.md +++ b/md/UBERON/09/UBERON_0002209.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002209 * *Label* = fibrous joint - * *Definition* = Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_joint] + * *Definition* = Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_joint ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * articulatio fibrosa - * junctura fibrosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * junctura fibrosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A joint where fibrous tissue such as ligament connects two calcified tissues.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002309.md b/md/UBERON/09/UBERON_0002309.md index e1b13e4c63..6b3732cc91 100644 --- a/md/UBERON/09/UBERON_0002309.md +++ b/md/UBERON/09/UBERON_0002309.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002309 * *Label* = medial longitudinal fasciculus - * *Definition* = The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_longitudinal_fasciculus] + * *Definition* = The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_longitudinal_fasciculus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * MLF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000543] - * fasciculus longitudinalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_longitudinal_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial longitudinal fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mlf] + * MLF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000543 ] + * fasciculus longitudinalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_longitudinal_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial longitudinal fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mlf ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts (group of axons), that begin with in the nucleus of the MLF and run ventral to the rhombencephalic ventricle, towards the caudal end of the medulla oblongata. The dorsal portion of the MLF including the Mauthner axon continues into the spinal chord while the ventral portion of the MLF associates with other fiber systems in the funiculus ventralis prior to reaching the spinal chord. Throughout the most of its rhombencephalic extent the MLF is intersected by the ventral rhombencephalic commissure[ZFA]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002409.md b/md/UBERON/09/UBERON_0002409.md index 3afab0dcb8..b8fb8d9676 100644 --- a/md/UBERON/09/UBERON_0002409.md +++ b/md/UBERON/09/UBERON_0002409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002409 * *Label* = pericardial fluid - * *Definition* = Transudate contained in the pericardial cavity.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9887[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_fluid] + * *Definition* = Transudate contained in the pericardial cavity.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9887, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_fluid ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [visceral serous pericardium](../../UBERON/25/UBERON_0002425.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002509.md b/md/UBERON/09/UBERON_0002509.md index be30339021..546d025119 100644 --- a/md/UBERON/09/UBERON_0002509.md +++ b/md/UBERON/09/UBERON_0002509.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002509 * *Label* = mesenteric lymph node - * *Definition* = the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005232] + * *Definition* = the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005232 ] ## Synonyms * mesenteric node - * nodi lymphoidei mesenterici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000767] + * nodi lymphoidei mesenterici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000767 ] ## Cross-references * BTO:0000767 * FMA:12795 * MA:0002829 - * UMLS:C0229792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesenteric_Lymph_Node] + * UMLS:C0229792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesenteric_Lymph_Node ] * ncithesaurus:Mesenteric_Lymph_Node ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [abdominal lymph node](../../UBERON/07/UBERON_0002507.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesentery](../../UBERON/95/UBERON_0002095.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002609.md b/md/UBERON/09/UBERON_0002609.md index b97430209c..451f622b28 100644 --- a/md/UBERON/09/UBERON_0002609.md +++ b/md/UBERON/09/UBERON_0002609.md @@ -6,18 +6,18 @@ ## Synonyms - * stmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1150[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * spinothalamic tract of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:535] - * tractus spinothalamicus (mesencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:535[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1150, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * spinothalamic tract of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:535 ] + * tractus spinothalamicus (mesencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:535, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:stmb * FMA:72463 * NIF_GrossAnatomy:birnlex_1150 - * NeuroNames:535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1150] + * NeuroNames:535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1150 ] * SCTID:369090006 - * UMLS:C0152376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1150] + * UMLS:C0152376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1150 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002709.md b/md/UBERON/09/UBERON_0002709.md index b13d9ca6b2..70389e96ea 100644 --- a/md/UBERON/09/UBERON_0002709.md +++ b/md/UBERON/09/UBERON_0002709.md @@ -7,18 +7,18 @@ ## Synonyms - * nuclei posteriores thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1467] - * posterior complex of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62024] - * posterior nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62024] - * posterior nuclear complex of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62024] - * posterior nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62024] - * posterior thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62024] - * PNC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1467[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Parieto-occipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PO] - * caudal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000325] - * posterior complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PO] - * posterior nucleus of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Po] - * posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002462] + * nuclei posteriores thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1467 ] + * posterior complex of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62024 ] + * posterior nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62024 ] + * posterior nuclear complex of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62024 ] + * posterior nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62024 ] + * posterior thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62024 ] + * PNC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1467, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Parieto-occipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PO ] + * caudal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000325 ] + * posterior complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PO ] + * posterior nucleus of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Po ] + * posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002462 ] ## Cross-references @@ -29,10 +29,10 @@ * BTO:0002462 * FMA:62024 * NIF_GrossAnatomy:birnlex_1467 - * NeuroNames:360 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1467] + * NeuroNames:360 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1467 ] * SCTID:424395006 * TAO:0000325 - * UMLS:C0175298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1467] + * UMLS:C0175298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1467 ] * ZFA:0000325 ## Subsets @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002809.md b/md/UBERON/09/UBERON_0002809.md index 60b3be2178..b343d8a0ab 100644 --- a/md/UBERON/09/UBERON_0002809.md +++ b/md/UBERON/09/UBERON_0002809.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002809 * *Label* = right temporal lobe - * *Definition* = A temporal lobe that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A temporal lobe that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * NIF_GrossAnatomy:birnlex_1785 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA * SCTID:314157005 - * UMLS:C1281970 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1785] + * UMLS:C1281970 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1785 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) and [temporal lobe](../../UBERON/71/UBERON_0001871.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0002909.md b/md/UBERON/09/UBERON_0002909.md index 88b5e180f8..6212d1ca4e 100644 --- a/md/UBERON/09/UBERON_0002909.md +++ b/md/UBERON/09/UBERON_0002909.md @@ -6,16 +6,16 @@ ## Synonyms - * sulcus subcentralis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4027] - * pscs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4027[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus subcentralis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4027 ] + * pscs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4027, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:pscs * FMA:83778 * NIF_GrossAnatomy:birnlex_4027 - * NeuroNames:103 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4027] - * UMLS:C0262318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4027] + * NeuroNames:103 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4027 ] + * UMLS:C0262318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4027 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003009.md b/md/UBERON/09/UBERON_0003009.md index 1c253fcf47..f923d1c09d 100644 --- a/md/UBERON/09/UBERON_0003009.md +++ b/md/UBERON/09/UBERON_0003009.md @@ -6,19 +6,19 @@ ## Synonyms - * Meynert's decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72451] - * decussatio tegmentalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72451[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal fountain decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72451] + * Meynert's decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72451 ] + * decussatio tegmentalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72451, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal fountain decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72451 ] * fountain decussation of Meynert - * posterior tegmental decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72451] - * dtgx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_901[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * chiasma fibrorum proprium tecti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio dorsalis tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio fibrorum medialium tecti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio tegmentalis dorsalis (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussationes tegmentales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussationes tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal tegmental decussation (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:523] + * posterior tegmental decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72451 ] + * dtgx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_901, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * chiasma fibrorum proprium tecti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio dorsalis tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio fibrorum medialium tecti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio tegmentalis dorsalis (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussationes tegmentales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussationes tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal tegmental decussation (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:523 ] ## Cross-references @@ -26,9 +26,9 @@ * BAMS:dtgx * FMA:72451 * NIF_GrossAnatomy:birnlex_901 - * NeuroNames:523 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_901] + * NeuroNames:523 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_901 ] * SCTID:369248009 - * UMLS:C0152370 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_901] + * UMLS:C0152370 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_901 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003109.md b/md/UBERON/09/UBERON_0003109.md index 319aa55df4..759e967f24 100644 --- a/md/UBERON/09/UBERON_0003109.md +++ b/md/UBERON/09/UBERON_0003109.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003109 * *Label* = parapophysis - * *Definition* = Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - check ## Synonyms - * lateral process of basiventral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001362] - * parapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001362[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * transverse apophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001362[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * transverse apophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001362] + * lateral process of basiventral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001362 ] + * parapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001362, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * transverse apophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001362, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * transverse apophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001362 ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Projections on each side of the vertebra from the point where the neural arch lamina joins the pedicel for the articulation with the head of a single-headed rib or the upper head of a double-headed rib. Also called diapophyses. They provide surfaces for the attachment of muscles. In anurans, the term transverse process is used in reference to the processes associated with the presacral and postsacral vertebrae.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from basiventral (TAO:0001361)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of non-Weberian precaudal vertebra (TAO:0001582)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003209.md b/md/UBERON/09/UBERON_0003209.md index d8ac6b6b15..49fff5380c 100644 --- a/md/UBERON/09/UBERON_0003209.md +++ b/md/UBERON/09/UBERON_0003209.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003209 * *Label* = blood nerve barrier - * *Definition* = barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0008065[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood-nerve_barrier] + * *Definition* = barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0008065, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood-nerve_barrier ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003309.md b/md/UBERON/09/UBERON_0003309.md index 13ee78f4d5..71322d1efd 100644 --- a/md/UBERON/09/UBERON_0003309.md +++ b/md/UBERON/09/UBERON_0003309.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003309 * *Label* = floor plate of diencephalon - * *Definition* = A floor plate that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * between brain floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate diencephalic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000871] - * floor plate diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000782] - * floor plate of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000871] - * floorplate of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * between brain floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate diencephalic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000871 ] + * floor plate diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000782 ] + * floor plate of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000871 ] + * floorplate of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -44,15 +44,14 @@ ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [regional part of diencephalon](../../UBERON/84/UBERON_0002784.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Other Logical Axioms @@ -61,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003409.md b/md/UBERON/09/UBERON_0003409.md index c9297d9b7f..ba1f54d0d2 100644 --- a/md/UBERON/09/UBERON_0003409.md +++ b/md/UBERON/09/UBERON_0003409.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003409 * *Label* = gland of tongue - * *Definition* = A gland that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tongue gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * tongue gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003509.md b/md/UBERON/09/UBERON_0003509.md index 07319747e9..ed449652a0 100644 --- a/md/UBERON/09/UBERON_0003509.md +++ b/md/UBERON/09/UBERON_0003509.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003509 * *Label* = arterial blood vessel - * *Definition* = A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = only in MA - supertype of artery, arteriole, aorta. ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arterial system](../../UBERON/72/UBERON_0004572.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003609.md b/md/UBERON/09/UBERON_0003609.md index f8adcc4311..123ae9face 100644 --- a/md/UBERON/09/UBERON_0003609.md +++ b/md/UBERON/09/UBERON_0003609.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003609 * *Label* = aorta elastic tissue - * *Definition* = the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009862] + * *Definition* = the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009862 ] ## Synonyms - * adult aorta elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult aorta elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult aorta textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aorta elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aorta elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009862] - * aorta elastic laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009862[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * aorta textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult aorta elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult aorta elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult aorta textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aorta elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aorta elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009862 ] + * aorta elastic laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009862, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * aorta textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003709.md b/md/UBERON/09/UBERON_0003709.md index 574cb73399..e4995efbfd 100644 --- a/md/UBERON/09/UBERON_0003709.md +++ b/md/UBERON/09/UBERON_0003709.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003709 * *Label* = circle of Willis - * *Definition* = a circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circle_of_Willis] + * *Definition* = a circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circle_of_Willis ] * *Comment* = In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis[http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html]. Editor note: ## Synonyms * arterial circle of Willis - * cerebral arterial circle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:486] - * arterial circle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circle_of_Willis] - * Willis circle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:486] - * circulus arteriosus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Circle_of_Willis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cerebral arterial circle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:486 ] + * arterial circle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circle_of_Willis ] + * Willis circle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:486 ] + * circulus arteriosus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Circle_of_Willis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,8 @@ * [systemic artery](../../UBERON/73/UBERON_0004573.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [left internal carotid artery](../../UBERON/42/UBERON_0007142.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [right internal carotid artery](../../UBERON/43/UBERON_0007143.md) ## Equivalencies @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0003909.md b/md/UBERON/09/UBERON_0003909.md index 195eeab33c..632ef8e34b 100644 --- a/md/UBERON/09/UBERON_0003909.md +++ b/md/UBERON/09/UBERON_0003909.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003909 * *Label* = sinusoid - * *Definition* = small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinusoid_(blood_vessel)] + * *Definition* = small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinusoid_(blood_vessel) ] * *Comment* = AO notes - some sources give discontinuous capillary as synonym but this may be a subtype - see FMA:63198 discontinuous sinusoid (undefined). ## Synonyms * sinusoidal blood vessel - * sinusoidal blood vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005261] + * sinusoidal blood vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005261 ] * endothelium of irregular blood filled space - * sinusoidal capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=13986] + * sinusoidal capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=13986 ] * sinusoidal endothelium ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = sinusoidal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004009.md b/md/UBERON/09/UBERON_0004009.md index eeee2af158..40d35a1a09 100644 --- a/md/UBERON/09/UBERON_0004009.md +++ b/md/UBERON/09/UBERON_0004009.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004009 * *Label* = cerebellum posterior vermis - * *Definition* = the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000869] + * *Definition* = the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000869 ] ## Synonyms * posterior cerebellum vermis - * vermis of posterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72259] + * vermis of posterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72259 ] * vermis of posterior lobe of cerebellum - * vermis of the posterior lobe of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081240] + * vermis of the posterior lobe of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081240 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellar vermis](../../UBERON/20/UBERON_0004720.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior lobe of cerebellum](../../UBERON/02/UBERON_0004002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004109.md b/md/UBERON/09/UBERON_0004109.md index 7c8ca7d095..75366b1394 100644 --- a/md/UBERON/09/UBERON_0004109.md +++ b/md/UBERON/09/UBERON_0004109.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004109 * *Label* = cortex of humerus - * *Definition* = The outer or sperficial part of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = The outer or sperficial part of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] ## Synonyms - * compact bone of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:31542] + * compact bone of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:31542 ] * cortex of the humerus * humerus compact bone * humerus cortical bone @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compact bone](../../UBERON/39/UBERON_0001439.md) and [part_of](../../BFO/50/BFO_0000050.md) some [humerus](../../UBERON/76/UBERON_0000976.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004209.md b/md/UBERON/09/UBERON_0004209.md index a5a2983877..c829c039a3 100644 --- a/md/UBERON/09/UBERON_0004209.md +++ b/md/UBERON/09/UBERON_0004209.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004209 * *Label* = renal vesicle - * *Definition* = The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072077] + * *Definition* = The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072077 ] * *Comment* = Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107 ## Synonyms - * stage I nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005586[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] + * stage I nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005586, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004409.md b/md/UBERON/09/UBERON_0004409.md index 3ac60b3c34..894dbd4a16 100644 --- a/md/UBERON/09/UBERON_0004409.md +++ b/md/UBERON/09/UBERON_0004409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004409 * *Label* = distal epiphysis of phalanx of manus - * *Definition* = A distal epiphysis that is part of a phalanx of manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a phalanx of manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [phalanx of manus](../../UBERON/36/UBERON_0001436.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004509.md b/md/UBERON/09/UBERON_0004509.md index fa28caf918..623bd789df 100644 --- a/md/UBERON/09/UBERON_0004509.md +++ b/md/UBERON/09/UBERON_0004509.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004509 * *Label* = skeletal muscle tissue of trapezius - * *Definition* = A portion of skeletal muscle tissue that is part of a trapezius [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a trapezius [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trapezius muscle](../../UBERON/80/UBERON_0002380.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004609.md b/md/UBERON/09/UBERON_0004609.md index 12193d7a24..324dbf4b55 100644 --- a/md/UBERON/09/UBERON_0004609.md +++ b/md/UBERON/09/UBERON_0004609.md @@ -3,19 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004609 * *Label* = rib 10 - * *Definition* = The tenth rib has only a single articular facet on its head. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tenth_rib] + * *Definition* = The tenth rib has only a single articular facet on its head. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tenth_rib ] * *Comment* = elements are to be defined spatially/topologically ## Synonyms - * tenth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8418] + * costa X [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tenth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8418 ] ## Cross-references * FMA:8418 * MA:0001410 * SCTID:244665000 - * UMLS:C1709946 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_10] + * UMLS:C1709946 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_10 ] * Wikipedia:Tenth_rib * http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray126.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray126.png/200px-Gray126.png @@ -38,8 +39,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 10 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004709.md b/md/UBERON/09/UBERON_0004709.md index 5ef81b7041..3fc952c7f3 100644 --- a/md/UBERON/09/UBERON_0004709.md +++ b/md/UBERON/09/UBERON_0004709.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004709 * *Label* = pelvic appendage - * *Definition* = Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000150] + * *Definition* = Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000150 ] * *Comment* = VSAO notes - in contrast to VSAO, we include separate subclasses for limbs and fins ## Synonyms - * hindlimb/pelvic fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pelvic appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000126] - * pelvic limb/fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * posterior paired appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000126] + * hindlimb/pelvic fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pelvic appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000126 ] + * pelvic limb/fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * posterior paired appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000126 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [paired limb/fin](../../UBERON/08/UBERON_0004708.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009876 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004809.md b/md/UBERON/09/UBERON_0004809.md index d22a876801..610a0c1a96 100644 --- a/md/UBERON/09/UBERON_0004809.md +++ b/md/UBERON/09/UBERON_0004809.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004809 * *Label* = salivary gland epithelium - * *Definition* = An epithelium that is part of a salivary gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a salivary gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of salivary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of salivary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * salivary gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of salivary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of salivary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * salivary gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [salivary gland](../../UBERON/44/UBERON_0001044.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0004909.md b/md/UBERON/09/UBERON_0004909.md index be5a129cf9..21e42b18c5 100644 --- a/md/UBERON/09/UBERON_0004909.md +++ b/md/UBERON/09/UBERON_0004909.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004909 * *Label* = epithelium of gonad - * *Definition* = An epithelium surrounding a gonad. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium surrounding a gonad. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts ## Synonyms - * gonad epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonadal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gonad epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonadal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EHDAA:4032 * EHDAA:5931 * FBbt:00004859 - * UMLS:C1517534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Germinal_Epithelium] + * UMLS:C1517534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Germinal_Epithelium ] * ncithesaurus:Germinal_Epithelium ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gonad](../../UBERON/91/UBERON_0000991.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005009.md b/md/UBERON/09/UBERON_0005009.md index 5157ae7baa..afc71d551b 100644 --- a/md/UBERON/09/UBERON_0005009.md +++ b/md/UBERON/09/UBERON_0005009.md @@ -3,57 +3,57 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005009 * *Label* = mucosa of trigone of urinary bladder - * *Definition* = A mucosa that is part of a trigone of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a trigone of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Lieutaud ' s trigone mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud ' s trigone mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud ' s trigone mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud ' s trigone organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of Lieutaud ' s trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of Lieutaud ' s trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of Lieutaud ' s trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of Lieutaud ' s trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Lieutaud ' s trigone mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud ' s trigone mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud ' s trigone mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud ' s trigone organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of Lieutaud ' s trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of Lieutaud ' s trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of Lieutaud ' s trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of Lieutaud ' s trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -69,15 +69,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trigone of urinary bladder](../../UBERON/57/UBERON_0001257.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005109.md b/md/UBERON/09/UBERON_0005109.md index 637f6a68f8..065f89f47a 100644 --- a/md/UBERON/09/UBERON_0005109.md +++ b/md/UBERON/09/UBERON_0005109.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005109 * *Label* = metanephric smooth muscle tissue - * *Definition* = Any smooth muscle tissue that is part of a metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072208[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any smooth muscle tissue that is part of a metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072208, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005309.md b/md/UBERON/09/UBERON_0005309.md index c266fec911..e4f2114836 100644 --- a/md/UBERON/09/UBERON_0005309.md +++ b/md/UBERON/09/UBERON_0005309.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005309 * *Label* = pronephric nephron - * *Definition* = A pronephric nephron is the functional unit of the pronephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039019] + * *Definition* = A pronephric nephron is the functional unit of the pronephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039019 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron](../../UBERON/85/UBERON_0001285.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The structure that is the basic functional unit of the pronephros.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005409.md b/md/UBERON/09/UBERON_0005409.md index 970558fede..8680fe25d0 100644 --- a/md/UBERON/09/UBERON_0005409.md +++ b/md/UBERON/09/UBERON_0005409.md @@ -7,13 +7,13 @@ ## Synonyms - * GI tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:294] - * alimentary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000323] - * alimentary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000323] - * gastro-intestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71132] - * gastrointestinal (GI) tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:294] - * gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71132] - * gastrointestinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71132[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * GI tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:294 ] + * alimentary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000323 ] + * alimentary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000323 ] + * gastro-intestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71132 ] + * gastrointestinal (GI) tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:294 ] + * gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71132 ] + * gastrointestinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71132, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0000323 * MESH:A03.492 * SCTID:373871007 - * UMLS:C0012240 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrointestinal_System] + * UMLS:C0012240 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrointestinal_System ] * VHOG:0000412 * galen:GastrointestinalTract * ncithesaurus:Gastrointestinal_System @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The system that includes the esophagus, stomach, small and large intestine, anus, liver, biliary tract, and pancreas[ncithesaurus:Gastrointestinal_System]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All metazoans (with degenerate exceptions) have some sort of digestive cavity with a means of entrance to and exit from it.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005609.md b/md/UBERON/09/UBERON_0005609.md index 7ad197e463..1dcdd089b0 100644 --- a/md/UBERON/09/UBERON_0005609.md +++ b/md/UBERON/09/UBERON_0005609.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005609 * *Label* = iliac artery - * *Definition* = Any of the arteries that arise from a bifurcation of the aorta supplying the pelvic or abdomen. Examples: Common iliac artery, External iliac artery, Internal iliac artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliac_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any of the arteries that arise from a bifurcation of the aorta supplying the pelvic or abdomen. Examples: Common iliac artery, External iliac artery, Internal iliac artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliac_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: this is an extremely loose and flexible grouping class that is the superclass of the mammalian common iliac and its main brahces, together with analagous structures in other tetrapods. AO notes: we place the XAO structure here for now. In terms of analagy, it is more closely related to common iliac, but the relationships currently attached to this class are mammal specific ## Synonyms @@ -18,7 +18,7 @@ * MESH:A07.231.114.444 * RETIRED_EHDAA2:0000807 * SCTID:244330006 - * UMLS:C0020887 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliac_Artery] + * UMLS:C0020887 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliac_Artery ] * Wikipedia:Iliac_artery * XAO:0000361 * galen:IliacArtery @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005709.md b/md/UBERON/09/UBERON_0005709.md index f58ac43dbc..eb3de1530a 100644 --- a/md/UBERON/09/UBERON_0005709.md +++ b/md/UBERON/09/UBERON_0005709.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005709 * *Label* = upper jaw incisor epithelium - * *Definition* = A dental epithelium that is part of a upper jaw incisor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dental epithelium that is part of a upper jaw incisor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dental epithelium](../../UBERON/43/UBERON_0003843.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw incisor](../../UBERON/50/UBERON_0003450.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0005809.md b/md/UBERON/09/UBERON_0005809.md index 87d50728dc..e536c7a52a 100644 --- a/md/UBERON/09/UBERON_0005809.md +++ b/md/UBERON/09/UBERON_0005809.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005809 * *Label* = cortex of manus bone - * *Definition* = The outer or sperficial part of a bone of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = The outer or sperficial part of a bone of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compact bone](../../UBERON/39/UBERON_0001439.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus bone](../../UBERON/97/UBERON_0005897.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0006009.md b/md/UBERON/09/UBERON_0006009.md index a752b72647..7925f2987a 100644 --- a/md/UBERON/09/UBERON_0006009.md +++ b/md/UBERON/09/UBERON_0006009.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006009 * *Label* = cusp of cardiac valve - * *Definition* = Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, 'bicuspid valve'). 'Nodules' are located at the tip of the valve, to form a tighter seal[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7232[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cusps_of_heart_valves] + * *Definition* = Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, 'bicuspid valve'). 'Nodules' are located at the tip of the valve, to form a tighter seal[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7232, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cusps_of_heart_valves ] ## Synonyms - * cardiac valve cusp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7232] - * cardiac valvular cusp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7232] - * cardiac valvule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7232] + * cardiac valve cusp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7232 ] + * cardiac valvular cusp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7232 ] + * cardiac valvule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7232 ] * cardial valve cusp - * semilunar valvule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7232] + * semilunar valvule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7232 ] ## Cross-references * FMA:7232 * SCTID:30822008 - * UMLS:C0225923 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Valve_Cusp] + * UMLS:C0225923 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Valve_Cusp ] * Wikipedia:Cusps_of_heart_valves * http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png * ncithesaurus:Cardiac_Valve_Cusp @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0006209.md b/md/UBERON/09/UBERON_0006209.md index a8e4afad0d..aa94e2aece 100644 --- a/md/UBERON/09/UBERON_0006209.md +++ b/md/UBERON/09/UBERON_0006209.md @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basioccipital endochondral element](../../UBERON/48/UBERON_0015048.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0006309.md b/md/UBERON/09/UBERON_0006309.md index 8c32547d07..653d25ca21 100644 --- a/md/UBERON/09/UBERON_0006309.md +++ b/md/UBERON/09/UBERON_0006309.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0006609.md b/md/UBERON/09/UBERON_0006609.md index aca991a7ba..79cc2aa491 100644 --- a/md/UBERON/09/UBERON_0006609.md +++ b/md/UBERON/09/UBERON_0006609.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006609 * *Label* = corpus cavernosum - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_cavernosum] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_cavernosum ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0006809.md b/md/UBERON/09/UBERON_0006809.md index 591a1f3a31..8879ce01bd 100644 --- a/md/UBERON/09/UBERON_0006809.md +++ b/md/UBERON/09/UBERON_0006809.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006809 * *Label* = obsolete supporting connective tissue - * *Definition* = Specialized connective tissue is a connective tissue, which consists of osteocytes and chondrocytes, the intercellular matrix of which is chondrified or calcified.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37374[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Specialized connective tissue is a connective tissue, which consists of osteocytes and chondrocytes, the intercellular matrix of which is chondrified or calcified.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37374, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] * *Comment* = made obsolete because FMA:37374 is a General anatomical term rather than a true class in the FMA ## Synonyms - * specialized connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37374] + * specialized connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37374 ] ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = AAO:0000571 * *[consider](../../er/oboInOwl#consider.md)* = FMA:37374 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006809 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_0006909.md b/md/UBERON/09/UBERON_0006909.md index 66acaaf7ed..10e0db5d70 100644 --- a/md/UBERON/09/UBERON_0006909.md +++ b/md/UBERON/09/UBERON_0006909.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006909 * *Label* = lumen of digestive tract - * *Definition* = An anatomical space that surrounded_by a digestive tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a digestive tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive tract lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * gut cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000349] - * gut lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45677] - * lumen of alimentary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lumen of digestive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lumen of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45677] + * digestive tract lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * gut cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000349 ] + * gut lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45677 ] + * lumen of alimentary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lumen of digestive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lumen of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45677 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0007109.md b/md/UBERON/09/UBERON_0007109.md index 14a24d3dca..3cfa1ca8f3 100644 --- a/md/UBERON/09/UBERON_0007109.md +++ b/md/UBERON/09/UBERON_0007109.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007109 * *Label* = meconium - * *Definition* = A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000838] + * *Definition* = A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000838 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0007709.md b/md/UBERON/09/UBERON_0007709.md index 9616ff09c9..c1c816fdbe 100644 --- a/md/UBERON/09/UBERON_0007709.md +++ b/md/UBERON/09/UBERON_0007709.md @@ -7,11 +7,11 @@ ## Synonyms - * SCPP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1726] - * superior cerebellar peduncle of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1726] - * scpp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1726[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * pedunculus cerebellaris superior (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:833[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior cerebellar peduncle of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:833] + * SCPP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1726 ] + * superior cerebellar peduncle of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1726 ] + * scpp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1726, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * pedunculus cerebellaris superior (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:833, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior cerebellar peduncle of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:833 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:72495 * NIF_GrossAnatomy:birnlex_1726 * NeuroNames:1007150190 - * NeuroNames:833 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1726] + * NeuroNames:833 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1726 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0007809.md b/md/UBERON/09/UBERON_0007809.md index 833f825ea7..75179592b4 100644 --- a/md/UBERON/09/UBERON_0007809.md +++ b/md/UBERON/09/UBERON_0007809.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007809 * *Label* = fascia of Camper - * *Definition* = The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Camper] + * *Definition* = The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Camper ] ## Synonyms - * Camper's fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Camper] - * adipose layer of superficial fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * camper's fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * fascia investiens intermedia abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fatty layer of subcutaneous tissue of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * fatty layer of superficial fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * intermediate investing fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * panniculus adiposus telae subcutaneae abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superficial layer of superficial fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19922] - * panniculus adiposus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_of_Camper[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Camper's fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Camper ] + * adipose layer of superficial fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * camper's fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * fascia investiens intermedia abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fatty layer of subcutaneous tissue of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * fatty layer of superficial fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * intermediate investing fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * panniculus adiposus telae subcutaneae abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superficial layer of superficial fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19922 ] + * panniculus adiposus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_of_Camper, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0008609.md b/md/UBERON/09/UBERON_0008609.md index b2c06f35fd..d8b54fe13b 100644 --- a/md/UBERON/09/UBERON_0008609.md +++ b/md/UBERON/09/UBERON_0008609.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008609 * *Label* = transversus menti muscle - * *Definition* = The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_the_chin] + * *Definition* = The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_the_chin ] ## Synonyms - * transverse menti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49080] - * musculus transversus menti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_the_chin[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transversus menti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_the_chin] + * transverse menti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49080 ] + * musculus transversus menti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_the_chin, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transversus menti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_the_chin ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0008809.md b/md/UBERON/09/UBERON_0008809.md index 1699a99000..c563a6328c 100644 --- a/md/UBERON/09/UBERON_0008809.md +++ b/md/UBERON/09/UBERON_0008809.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008809 * *Label* = foramina of scarpa - * *Definition* = In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramina_of_Scarpa] + * *Definition* = In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramina_of_Scarpa ] ## Synonyms - * foramina of scarpa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramina_of_Scarpa] + * foramina of scarpa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramina_of_Scarpa ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0008909.md b/md/UBERON/09/UBERON_0008909.md index bd4fc8ca83..56567d7791 100644 --- a/md/UBERON/09/UBERON_0008909.md +++ b/md/UBERON/09/UBERON_0008909.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008909 * *Label* = perichordal bone - * *Definition* = Bone element that is adjacent to the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000307[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Bone element that is adjacent to the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000307, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Editor notes: We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO. We also include the subtyping under 'replacement bone', for consistency with ZFA ## Synonyms - * perichordal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001629[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * perichordal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001629] + * perichordal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001629, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * perichordal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001629 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [notochord](../../UBERON/28/UBERON_0002328.md) and [bone element](../../UBERON/74/UBERON_0001474.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Replacement bone that forms within the connective tissue surrounding the notochord.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0009009.md b/md/UBERON/09/UBERON_0009009.md index 742841fe11..b7137d47d8 100644 --- a/md/UBERON/09/UBERON_0009009.md +++ b/md/UBERON/09/UBERON_0009009.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009009 * *Label* = carotid sinus nerve - * *Definition* = Carotid branch of glossopharyngeal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004978] + * *Definition* = Carotid branch of glossopharyngeal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004978 ] ## Synonyms - * carotid branch of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53488] - * ramus sinus carotici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53488] + * carotid branch of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53488 ] + * ramus sinus carotici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53488 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0009709.md b/md/UBERON/09/UBERON_0009709.md index 49b3f07718..9212401ad8 100644 --- a/md/UBERON/09/UBERON_0009709.md +++ b/md/UBERON/09/UBERON_0009709.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0009909.md b/md/UBERON/09/UBERON_0009909.md index 0d23a0b29d..b67222f64d 100644 --- a/md/UBERON/09/UBERON_0009909.md +++ b/md/UBERON/09/UBERON_0009909.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010009.md b/md/UBERON/09/UBERON_0010009.md index 735190f4e6..5740fc2c01 100644 --- a/md/UBERON/09/UBERON_0010009.md +++ b/md/UBERON/09/UBERON_0010009.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010009 * *Label* = aggregate regional part of brain - * *Definition* = A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090509] + * *Definition* = A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090509 ] ## Synonyms - * set of nuclei of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256381] + * set of nuclei of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256381 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010209.md b/md/UBERON/09/UBERON_0010209.md index 373c351341..9badc90a6f 100644 --- a/md/UBERON/09/UBERON_0010209.md +++ b/md/UBERON/09/UBERON_0010209.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010209 * *Label* = plica semilunaris of conjunctiva - * *Definition* = The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is considered a vestigial organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plica_semilunaris_of_conjunctiva] + * *Definition* = The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is considered a vestigial organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plica_semilunaris_of_conjunctiva ] ## Synonyms - * plica semilunaris (conjunctiva) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59045] - * semilunar fold of conjunctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59045] - * plica semilunaris conjunctivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plica_semilunaris_of_conjunctiva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plica semilunaris of the conjunctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plica_semilunaris_of_conjunctiva] + * plica semilunaris (conjunctiva) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59045 ] + * semilunar fold of conjunctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59045 ] + * plica semilunaris conjunctivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plica_semilunaris_of_conjunctiva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plica semilunaris of the conjunctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plica_semilunaris_of_conjunctiva ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010309.md b/md/UBERON/09/UBERON_0010309.md index 2bfa9eb559..7833acf906 100644 --- a/md/UBERON/09/UBERON_0010309.md +++ b/md/UBERON/09/UBERON_0010309.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010309 * *Label* = palpebral bone - * *Definition* = An ossified element investing the upper eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palpebral_(bone)] + * *Definition* = An ossified element investing the upper eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palpebral_(bone) ] * *Comment* = Taxon notes: The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988). Editor notes PMID:16496288 says 'invests' the eyelid, is this consistent across taxa? ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010409.md b/md/UBERON/09/UBERON_0010409.md index 48e890f202..3cc875f1f0 100644 --- a/md/UBERON/09/UBERON_0010409.md +++ b/md/UBERON/09/UBERON_0010409.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010509.md b/md/UBERON/09/UBERON_0010509.md index 26686b6e89..b114ce1b67 100644 --- a/md/UBERON/09/UBERON_0010509.md +++ b/md/UBERON/09/UBERON_0010509.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010509 * *Label* = strand of pelage hair - * *Definition* = A strand of hair that is part of a coat of hair. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A strand of hair that is part of a coat of hair. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pelage hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001897] + * pelage hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001897 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [coat of hair](../../UBERON/66/UBERON_0010166.md) and [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0010709.md b/md/UBERON/09/UBERON_0010709.md index 6f9498d1e1..df6ff013c4 100644 --- a/md/UBERON/09/UBERON_0010709.md +++ b/md/UBERON/09/UBERON_0010709.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010709 * *Label* = pelvic complex - * *Definition* = Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000215] + * *Definition* = Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000215 ] * *Comment* = AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here ## Synonyms - * pelvic appendage/girdle complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000215] - * pelvic girdle plus pelvic limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pelvic girdle plus posterior limb or fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7184[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pelvic appendage/girdle complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000215 ] + * pelvic girdle plus pelvic limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pelvic girdle plus posterior limb or fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7184, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage girdle complex](../../UBERON/07/UBERON_0010707.md) and [has_part](../../BFO/51/BFO_0000051.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Appendage girdle complex that when present, encompasses the pelvic appendage and the pelvic girdle.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011209.md b/md/UBERON/09/UBERON_0011209.md index 0a072fe764..37550f0c8e 100644 --- a/md/UBERON/09/UBERON_0011209.md +++ b/md/UBERON/09/UBERON_0011209.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral migration pathway mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000992] + * lateral migration pathway mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000992 ] * lateral migration pathway ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011209 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011309.md b/md/UBERON/09/UBERON_0011309.md index 31a12f3a35..ddfaf625fa 100644 --- a/md/UBERON/09/UBERON_0011309.md +++ b/md/UBERON/09/UBERON_0011309.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011309 * *Label* = body of mandible - * *Definition* = The body of the mandible is curved somewhat like a horseshoe and has two surfaces and two borders. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_mandible] + * *Definition* = The body of the mandible is curved somewhat like a horseshoe and has two surfaces and two borders. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_mandible ] ## Synonyms - * mandibular body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52827] - * body of the mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_mandible] + * mandibular body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52827 ] + * body of the mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_mandible ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011509.md b/md/UBERON/09/UBERON_0011509.md index a103ad4ac0..6f6bcd1322 100644 --- a/md/UBERON/09/UBERON_0011509.md +++ b/md/UBERON/09/UBERON_0011509.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011509 * *Label* = sphincter colli profundus muscle - * *Definition* = The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://de.wikipedia.org/wiki/Platysma] + * *Definition* = The sphincter colli profundus lies below the platysma in the area of the parotid gland (gland regions). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://de.wikipedia.org/wiki/Platysma ] * *Comment* = The muscles of the mid and upper face derive from the embryonic sphincter colli profundus muscle ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011609.md b/md/UBERON/09/UBERON_0011609.md index 09c39fd283..f56da297f4 100644 --- a/md/UBERON/09/UBERON_0011609.md +++ b/md/UBERON/09/UBERON_0011609.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011809.md b/md/UBERON/09/UBERON_0011809.md index fcd0b44131..2d82a6bb05 100644 --- a/md/UBERON/09/UBERON_0011809.md +++ b/md/UBERON/09/UBERON_0011809.md @@ -7,10 +7,10 @@ ## Synonyms - * epidermal collar of feather follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * follicle collar of feather follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * epidermal collar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * follicle collar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * epidermal collar of feather follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * follicle collar of feather follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * epidermal collar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * follicle collar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011809 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0011909.md b/md/UBERON/09/UBERON_0011909.md index 2de2dac488..b8576a23f2 100644 --- a/md/UBERON/09/UBERON_0011909.md +++ b/md/UBERON/09/UBERON_0011909.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011909 * *Label* = gastrocnemius internus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011909 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0012109.md b/md/UBERON/09/UBERON_0012109.md index 450646b107..9d3bccb848 100644 --- a/md/UBERON/09/UBERON_0012109.md +++ b/md/UBERON/09/UBERON_0012109.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012109 * *Label* = zygomatic process of frontal bone - * *Definition* = The part of the zygomatic process consisting of the frontal bone[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_process_of_frontal_bone] + * *Definition* = The part of the zygomatic process consisting of the frontal bone[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_process_of_frontal_bone ] ## Synonyms * frontal bone - zygomatic process - * processus zygomaticus (os frontale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54389] - * processus zygomaticus ossis frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_process_of_frontal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus zygomaticus (os frontale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54389 ] + * processus zygomaticus ossis frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_process_of_frontal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0012309.md b/md/UBERON/09/UBERON_0012309.md index df2a93149b..f74e1d3781 100644 --- a/md/UBERON/09/UBERON_0012309.md +++ b/md/UBERON/09/UBERON_0012309.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012309 * *Label* = superficial anterior cervical lymph node - * *Definition* = The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_anterior_cervical_lymph_nodes] + * *Definition* = The superficial anterior cervical lymph nodes are found in proximity to the anterior jugular vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_anterior_cervical_lymph_nodes ] ## Synonyms - * anterior jugular lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12776] + * anterior jugular lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12776 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012309 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0013509.md b/md/UBERON/09/UBERON_0013509.md index f1d3cb6f3f..979dbcdc3f 100644 --- a/md/UBERON/09/UBERON_0013509.md +++ b/md/UBERON/09/UBERON_0013509.md @@ -6,7 +6,7 @@ ## Synonyms - * lumbar vertebral cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001038] + * lumbar vertebral cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001038 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0013609.md b/md/UBERON/09/UBERON_0013609.md index 774502ad6c..1728a9ceb0 100644 --- a/md/UBERON/09/UBERON_0013609.md +++ b/md/UBERON/09/UBERON_0013609.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0013709.md b/md/UBERON/09/UBERON_0013709.md index 51576523e9..2f77fbae1b 100644 --- a/md/UBERON/09/UBERON_0013709.md +++ b/md/UBERON/09/UBERON_0013709.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013709 * *Label* = anterior inferior iliac spine - * *Definition* = The anterior inferior iliac spine (AIIS) is a bony eminence on the anterior border of the hip bone, or, more precisely, the wing of the ilium (i.e. the upper lateral parts of the pelvis). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_inferior_iliac_spine] + * *Definition* = The anterior inferior iliac spine (AIIS) is a bony eminence on the anterior border of the hip bone, or, more precisely, the wing of the ilium (i.e. the upper lateral parts of the pelvis). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_inferior_iliac_spine ] ## Synonyms - * anterior inferior iliac spine (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63614] - * anterior inferior spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_inferior_iliac_spine] + * anterior inferior iliac spine (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63614 ] + * anterior inferior spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_inferior_iliac_spine ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0014409.md b/md/UBERON/09/UBERON_0014409.md index 38dc4fdc04..5638867513 100644 --- a/md/UBERON/09/UBERON_0014409.md +++ b/md/UBERON/09/UBERON_0014409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014409 * *Label* = metacromion - * *Definition* = A process projecting backward and downward from the acromion of the scapula of some mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/Metacromion] + * *Definition* = A process projecting backward and downward from the acromion of the scapula of some mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/Metacromion ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014409 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0014509.md b/md/UBERON/09/UBERON_0014509.md index 50b12c1fe3..ac8202cee6 100644 --- a/md/UBERON/09/UBERON_0014509.md +++ b/md/UBERON/09/UBERON_0014509.md @@ -7,7 +7,7 @@ ## Synonyms - * DSIL [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * DSIL [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * distal sesamoidean impar ligament * impar ligament of distal equine limb @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014509 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0014609.md b/md/UBERON/09/UBERON_0014609.md index 56587f9363..5f4e3d9193 100644 --- a/md/UBERON/09/UBERON_0014609.md +++ b/md/UBERON/09/UBERON_0014609.md @@ -6,14 +6,14 @@ ## Synonyms - * thoracic spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1404[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * thoracic spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1404] + * thoracic spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1404, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * thoracic spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1404 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1404 * SCTID:362442007 - * UMLS:C0228628 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1404] + * UMLS:C0228628 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1404 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal horn of spinal cord](../../UBERON/56/UBERON_0002256.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014609 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0014709.md b/md/UBERON/09/UBERON_0014709.md index e4e6a0fee9..be28c8f6c4 100644 --- a/md/UBERON/09/UBERON_0014709.md +++ b/md/UBERON/09/UBERON_0014709.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014709 * *Label* = carapace primordium - * *Definition* = A primordium that gives rise to a carapace. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A primordium that gives rise to a carapace. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014709 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0015009.md b/md/UBERON/09/UBERON_0015009.md index 5e96c8bf5e..a8c1caf814 100644 --- a/md/UBERON/09/UBERON_0015009.md +++ b/md/UBERON/09/UBERON_0015009.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015009 * *Label* = lumbar vertebra endochondral element - * *Definition* = A lumbar vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A lumbar vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * lumbar vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * lumbar vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * lumbar vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * lumbar vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [lumbar vertebra cartilage element](../../UBERON/09/UBERON_0013509.md)or[lumbar vertebra pre-cartilage condensation](../../UBERON/10/UBERON_0013510.md)or[lumbar vertebra](../../UBERON/14/UBERON_0002414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_0015109.md b/md/UBERON/09/UBERON_0015109.md index 71d45d6ec6..cfef70b14b 100644 --- a/md/UBERON/09/UBERON_0015109.md +++ b/md/UBERON/09/UBERON_0015109.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone 3 endochondral element](../../UBERON/08/UBERON_0015108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015109 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_1000009.md b/md/UBERON/09/UBERON_1000009.md index 6c988a973a..48fc12c67e 100644 --- a/md/UBERON/09/UBERON_1000009.md +++ b/md/UBERON/09/UBERON_1000009.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000009 * *Label* = midline crest - * *Definition* = A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000009 + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_1500009.md b/md/UBERON/09/UBERON_1500009.md index 3edc5fb0bd..6a057342e5 100644 --- a/md/UBERON/09/UBERON_1500009.md +++ b/md/UBERON/09/UBERON_1500009.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1500009 * *Label* = pelvic fin basipterygial radial - * *Definition* = Pelvic fin radial that is an endochondral fused radials or pterygiophores at the base of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/complete%20dictionary.htm] + * *Definition* = Pelvic fin radial that is an endochondral fused radials or pterygiophores at the base of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/complete%20dictionary.htm ] ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_1600009.md b/md/UBERON/09/UBERON_1600009.md index b41b4e2d14..eb7487a555 100644 --- a/md/UBERON/09/UBERON_1600009.md +++ b/md/UBERON/09/UBERON_1600009.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1600009 * *Label* = obsolete pelvic fin basipterygial radial element - * *Definition* = Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/complete%20dictionary.htm] + * *Definition* = Pelvic fin radial element that is an endochondral fused radial elements or pterygiophores at the base of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/complete%20dictionary.htm ] * *Comment* = Obsoleted because basipterygium is not a type of radial. ## Synonyms @@ -26,8 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_2000209.md b/md/UBERON/09/UBERON_2000209.md index c1edb743ce..3aaf3cbea9 100644 --- a/md/UBERON/09/UBERON_2000209.md +++ b/md/UBERON/09/UBERON_2000209.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2000309.md b/md/UBERON/09/UBERON_2000309.md index 320658e7d3..8e31a5a8d2 100644 --- a/md/UBERON/09/UBERON_2000309.md +++ b/md/UBERON/09/UBERON_2000309.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000309 * *Label* = E-YSL - * *Definition* = The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * external yolk syncytial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * external yolk syncytial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2000609.md b/md/UBERON/09/UBERON_2000609.md index c498d6a0e2..4e6aacf841 100644 --- a/md/UBERON/09/UBERON_2000609.md +++ b/md/UBERON/09/UBERON_2000609.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2000809.md b/md/UBERON/09/UBERON_2000809.md index 45a69d921e..fb7dfcc4ba 100644 --- a/md/UBERON/09/UBERON_2000809.md +++ b/md/UBERON/09/UBERON_2000809.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000809 * *Label* = myotome somite 4 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2001009.md b/md/UBERON/09/UBERON_2001009.md index 44fcba7670..0ceefd7e33 100644 --- a/md/UBERON/09/UBERON_2001009.md +++ b/md/UBERON/09/UBERON_2001009.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001009[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001009, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_2001109.md b/md/UBERON/09/UBERON_2001109.md index 54ffdf857a..a15a4609a8 100644 --- a/md/UBERON/09/UBERON_2001109.md +++ b/md/UBERON/09/UBERON_2001109.md @@ -6,7 +6,7 @@ ## Synonyms - * egg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001109] + * egg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001109 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_2001409.md b/md/UBERON/09/UBERON_2001409.md index ab05398346..343d65ea5b 100644 --- a/md/UBERON/09/UBERON_2001409.md +++ b/md/UBERON/09/UBERON_2001409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001409 * *Label* = infraorbital 4 - * *Definition* = Infraorbital that is the fourth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Infraorbital that is the fourth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2001609.md b/md/UBERON/09/UBERON_2001609.md index b979e1a9b3..b16b9f1070 100644 --- a/md/UBERON/09/UBERON_2001609.md +++ b/md/UBERON/09/UBERON_2001609.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001609 * *Label* = pharyngobranchial 2 bone uncinate process - * *Definition* = Bony projection that is part of the pharyngobranchial 2 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bony projection that is part of the pharyngobranchial 2 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2001709.md b/md/UBERON/09/UBERON_2001709.md index a369e6c791..8a83c2f36f 100644 --- a/md/UBERON/09/UBERON_2001709.md +++ b/md/UBERON/09/UBERON_2001709.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001709 * *Label* = infraorbital series - * *Definition* = Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. ## Synonyms - * circumorbital series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001709] + * circumorbital series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001709 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2001809.md b/md/UBERON/09/UBERON_2001809.md index 9aed0d1310..3a4d0731fd 100644 --- a/md/UBERON/09/UBERON_2001809.md +++ b/md/UBERON/09/UBERON_2001809.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001809 * *Label* = trigeminal foramen - * *Definition* = Foramen through which cranial nerve V (trigeminal) exits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen through which cranial nerve V (trigeminal) exits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = This is the posterior opening of trigeminofacialis (or trigeminal-facialis) chamber. ## Synonyms - * posterior opening of trigeminofacialis chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001809] + * posterior opening of trigeminofacialis chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001809 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2001909.md b/md/UBERON/09/UBERON_2001909.md index 3aeb26d189..3322776751 100644 --- a/md/UBERON/09/UBERON_2001909.md +++ b/md/UBERON/09/UBERON_2001909.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001909 * *Label* = pharyngobranchial element - * *Definition* = Skeletal element of the branchial arches located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element of the branchial arches located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2002009.md b/md/UBERON/09/UBERON_2002009.md index dbaf33274c..679e161740 100644 --- a/md/UBERON/09/UBERON_2002009.md +++ b/md/UBERON/09/UBERON_2002009.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002009 * *Label* = medial cartilage of palatine - * *Definition* = Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2002109.md b/md/UBERON/09/UBERON_2002109.md index a523c2a08c..b30e8421bf 100644 --- a/md/UBERON/09/UBERON_2002109.md +++ b/md/UBERON/09/UBERON_2002109.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_2005209.md b/md/UBERON/09/UBERON_2005209.md index 434d10e499..5f2a445f0a 100644 --- a/md/UBERON/09/UBERON_2005209.md +++ b/md/UBERON/09/UBERON_2005209.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_2005409.md b/md/UBERON/09/UBERON_2005409.md index ca871f5e8a..8f3ff6e49c 100644 --- a/md/UBERON/09/UBERON_2005409.md +++ b/md/UBERON/09/UBERON_2005409.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005409 * *Label* = pars superior ear - * *Definition* = The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3000209.md b/md/UBERON/09/UBERON_3000209.md index d50c487b66..8c97eaab79 100644 --- a/md/UBERON/09/UBERON_3000209.md +++ b/md/UBERON/09/UBERON_3000209.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000209 * *Label* = frontoparietal fontanelle - * *Definition* = Dorsal opening of the neurocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal opening of the neurocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3000309.md b/md/UBERON/09/UBERON_3000309.md index 44253ee227..d6aa7c5315 100644 --- a/md/UBERON/09/UBERON_3000309.md +++ b/md/UBERON/09/UBERON_3000309.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3000509.md b/md/UBERON/09/UBERON_3000509.md index e1f0fc34a8..266279bd99 100644 --- a/md/UBERON/09/UBERON_3000509.md +++ b/md/UBERON/09/UBERON_3000509.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3000809.md b/md/UBERON/09/UBERON_3000809.md index 1df8afcb18..0672832e80 100644 --- a/md/UBERON/09/UBERON_3000809.md +++ b/md/UBERON/09/UBERON_3000809.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000809 * *Label* = accessory articulation - * *Definition* = Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Cannatella_1985] + * *Definition* = Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Cannatella_1985 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3000909.md b/md/UBERON/09/UBERON_3000909.md index 0f4ed5b92a..2b1c1e3710 100644 --- a/md/UBERON/09/UBERON_3000909.md +++ b/md/UBERON/09/UBERON_3000909.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000909 * *Label* = sulcus proximalis ossis cruris - * *Definition* = In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3001009.md b/md/UBERON/09/UBERON_3001009.md index d144b4bd2b..11cf22ca39 100644 --- a/md/UBERON/09/UBERON_3001009.md +++ b/md/UBERON/09/UBERON_3001009.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3010109.md b/md/UBERON/09/UBERON_3010109.md index 384fd6e202..88c9c6627c 100644 --- a/md/UBERON/09/UBERON_3010109.md +++ b/md/UBERON/09/UBERON_3010109.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010109 * *Label* = anteroventral lateral line nerve (AVLLN) - * *Definition* = Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Sensory nerve of the anterior lateral line component. It develops from preotic anteroventral placode. AVLLN innervates lower jaw lines of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3010209.md b/md/UBERON/09/UBERON_3010209.md index 17a3e1de1c..dbb0f96c43 100644 --- a/md/UBERON/09/UBERON_3010209.md +++ b/md/UBERON/09/UBERON_3010209.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_3010309.md b/md/UBERON/09/UBERON_3010309.md index 21959a40f2..921e4fedde 100644 --- a/md/UBERON/09/UBERON_3010309.md +++ b/md/UBERON/09/UBERON_3010309.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010309 * *Label* = obsolete B cell - * *Definition* = A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000236 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_3010709.md b/md/UBERON/09/UBERON_3010709.md index cf4916566d..eaf88269f9 100644 --- a/md/UBERON/09/UBERON_3010709.md +++ b/md/UBERON/09/UBERON_3010709.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010709 * *Label* = levator mandibulae lateralis - * *Definition* = Responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms - * m. adductor mandibulae posterior articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010709] + * m. adductor mandibulae posterior articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010709 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_4000009.md b/md/UBERON/09/UBERON_4000009.md index c1e8013a13..88acdc2521 100644 --- a/md/UBERON/09/UBERON_4000009.md +++ b/md/UBERON/09/UBERON_4000009.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000009 * *Label* = obsolete notochordal cell - * *Definition* = Cell of the notochord, often vacuolated or resembles a chondrocyte. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Cell of the notochord, often vacuolated or resembles a chondrocyte. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007005 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_4000109.md b/md/UBERON/09/UBERON_4000109.md index 4a85ad1495..d72f71a684 100644 --- a/md/UBERON/09/UBERON_4000109.md +++ b/md/UBERON/09/UBERON_4000109.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000109 * *Label* = mineralized hyaline cartilage tissue - * *Definition* = Hyaline cartilage tissue that is mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Hyaline cartilage tissue that is mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_4100009.md b/md/UBERON/09/UBERON_4100009.md index e6d13e0894..9a5504d6bc 100644 --- a/md/UBERON/09/UBERON_4100009.md +++ b/md/UBERON/09/UBERON_4100009.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 7](../../UBERON/37/UBERON_0012137.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_4200009.md b/md/UBERON/09/UBERON_4200009.md index a79407b37f..151928dd77 100644 --- a/md/UBERON/09/UBERON_4200009.md +++ b/md/UBERON/09/UBERON_4200009.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_4200109.md b/md/UBERON/09/UBERON_4200109.md index e9eb323b08..1a4f77241a 100644 --- a/md/UBERON/09/UBERON_4200109.md +++ b/md/UBERON/09/UBERON_4200109.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/09/UBERON_4400009.md b/md/UBERON/09/UBERON_4400009.md index 98d5e6a555..17f7422d00 100644 --- a/md/UBERON/09/UBERON_4400009.md +++ b/md/UBERON/09/UBERON_4400009.md @@ -26,8 +26,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:1500006 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/09/UBERON_4440009.md b/md/UBERON/09/UBERON_4440009.md index 4960c3e312..57ed136bae 100644 --- a/md/UBERON/09/UBERON_4440009.md +++ b/md/UBERON/09/UBERON_4440009.md @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fin radial skeleton](../../UBERON/08/UBERON_4440008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000010.md b/md/UBERON/10/UBERON_0000010.md index 86f19d4b79..6f74c4c7e2 100644 --- a/md/UBERON/10/UBERON_0000010.md +++ b/md/UBERON/10/UBERON_0000010.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000010 * *Label* = peripheral nervous system - * *Definition* = Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OMD:peripheral+nervous+system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peripheral_nervous_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OMD:peripheral+nervous+system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peripheral_nervous_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms * PNS - * lateral part of the basal amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247] - * lateral part of the basolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247] - * nucleus amygdalae basalis, pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis, pars lateralis magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis lateralis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars peripherica; systema nervosum periphericum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peripheral_nervous_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral part of the basal amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247 ] + * lateral part of the basolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247 ] + * nucleus amygdalae basalis, pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis, pars lateralis magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis lateralis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars peripherica; systema nervosum periphericum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peripheral_nervous_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,12 +36,12 @@ * MESH:A08.800 * MIAA:0000338 * NIF_GrossAnatomy:birnlex_1111 - * NeuroNames:247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1111] + * NeuroNames:247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1111 ] * SCTID:362292005 * TAO:0000142 - * UMLS:C0206417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1111] - * UMLS:C0206417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peripheral_Nervous_System] - * UMLS:C1305921 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1111] + * UMLS:C0206417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1111 ] + * UMLS:C0206417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peripheral_Nervous_System ] + * UMLS:C1305921 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1111 ] * VHOG:0000399 * Wikipedia:Peripheral_nervous_system * XAO:0000178 @@ -75,8 +75,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The peripheral nervous system (PNS) is the part of the nervous system connected to the CNS which contains cranial nerves III - XII, spinal, peripheral and autonomic nerves. (CUMBO) * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) specific vertebrate traits within the chordate phylum such as skeletal tissues, PNS, and spectacular head and brain development, are linked to the NC (neural crest) and its derivatives.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000110.md b/md/UBERON/10/UBERON_0000110.md index cb9b98d0f6..94ff8f1c53 100644 --- a/md/UBERON/10/UBERON_0000110.md +++ b/md/UBERON/10/UBERON_0000110.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000110 * *Label* = neurula stage - * *Definition* = Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001841] + * *Definition* = Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001841 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000210.md b/md/UBERON/10/UBERON_0000210.md index 8b48ecd7a9..5cc8ccbf65 100644 --- a/md/UBERON/10/UBERON_0000210.md +++ b/md/UBERON/10/UBERON_0000210.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000210 * *Label* = tetrapod parietal bone - * *Definition* = In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000514] + * *Definition* = In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000514 ] * *Comment* = Taxon notes: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods[various]. In many non-mammalian tetrapods, they are bordered to the rear by a pair of postparietal bones that may be solely in the roof of the skull, or slope downwards to contribute to the back of the skull, depending on the species. In the living tuatara, and many fossil species, a small opening, the parietal foramen, lies between the two parietal bones. This opening is the location of a third eye in the midline of the skull, which is much smaller than the two main eyes[WP] ## Synonyms - * actinopterygian frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] - * frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] - * parietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000390[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * parietal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9613[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * os parietale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os parietale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_bone] + * actinopterygian frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] + * frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] + * parietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000390, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * parietal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9613, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * os parietale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_bone ] + * os parietale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001469 * MESH:A02.835.232.781.651 * SCTID:181794000 - * UMLS:C0030558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parietal_Bone] + * UMLS:C0030558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parietal_Bone ] * VHOG:0001324 * VHOG:0001326 * Wikipedia:Parietal_bone @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The homologization of cranial bones of actinopterygians with those of sarcopterygians based on the bone names established in human anatomy is favored in order to permit the building of phylogenetic relationship schemes beyond the taxonomic boundaries of osteichthyans (including tetrapods). (...) In actinopterygians, the terms parietal and postparietal bones have to replace the commonly used terms 'frontal' and 'parietal' bones for the two paired bones on the skull roof.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000310.md b/md/UBERON/10/UBERON_0000310.md index fd5c08716a..1abf01d989 100644 --- a/md/UBERON/10/UBERON_0000310.md +++ b/md/UBERON/10/UBERON_0000310.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000310 * *Label* = breast - * *Definition* = The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primates body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Breast] + * *Definition* = The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primates body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Breast ] ## Synonyms - * mammary part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9601] - * mammary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9601] - * mamma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Breast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mammary part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9601 ] + * mammary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9601 ] + * mamma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Breast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A01.236 * OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA * SCTID:181131000 - * UMLS:C0006141 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Breast] + * UMLS:C0006141 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Breast ] * Wikipedia:Breast * galen:Breast * http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000410.md b/md/UBERON/10/UBERON_0000410.md index 6e9af0cc94..4ed4ff2967 100644 --- a/md/UBERON/10/UBERON_0000410.md +++ b/md/UBERON/10/UBERON_0000410.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000410 * *Label* = bronchial mucosa - * *Definition* = A mucosa that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Mucous membrane of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62652] - * bronchi mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62652[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Mucous membrane of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62652 ] + * bronchi mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62652, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -51,15 +51,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0000910.md b/md/UBERON/10/UBERON_0000910.md index fd17141f10..4d2ce94e19 100644 --- a/md/UBERON/10/UBERON_0000910.md +++ b/md/UBERON/10/UBERON_0000910.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000910 * *Label* = chyme - * *Definition* = Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chyme] + * *Definition* = Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chyme ] ## Synonyms - * chymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000026] + * chymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000026 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001010.md b/md/UBERON/10/UBERON_0001010.md index 844b50b5a2..cbfd153bfe 100644 --- a/md/UBERON/10/UBERON_0001010.md +++ b/md/UBERON/10/UBERON_0001010.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001010 * *Label* = diaphysis of ulna - * *Definition* = The body of the ulna at its upper part is prismatic in form, and curved so as to be convex behind and lateralward; its central part is straight; its lower part is rounded, smooth, and bent a little lateralward. It tapers gradually from above downward, and has three borders and three surfaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_ulna] + * *Definition* = The body of the ulna at its upper part is prismatic in form, and curved so as to be convex behind and lateralward; its central part is straight; its lower part is rounded, smooth, and bent a little lateralward. It tapers gradually from above downward, and has three borders and three surfaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_ulna ] ## Synonyms - * body of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33760] - * corpus ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33760] - * shaft of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33760] - * ulnar diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33760] - * shaft of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_ulna] - * supinator crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_ulna] + * body of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33760 ] + * corpus ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33760 ] + * shaft of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33760 ] + * ulnar diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33760 ] + * shaft of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_ulna ] + * supinator crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_ulna ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001110.md b/md/UBERON/10/UBERON_0001110.md index c54dc9fc98..a35ba98b72 100644 --- a/md/UBERON/10/UBERON_0001110.md +++ b/md/UBERON/10/UBERON_0001110.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001110 * *Label* = thyrohyoid muscle - * *Definition* = The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle] + * *Definition* = The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle ] ## Synonyms - * thyrohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle] - * musculus thyrohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thyreohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle] - * thyreohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle] - * thyrohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyrohyoid_muscle] + * thyrohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle ] + * musculus thyrohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thyreohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle ] + * thyreohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle ] + * thyrohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyrohyoid_muscle ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:13344 * MA:0002393 * SCTID:244832006 - * UMLS:C0224167 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyrohyoid] + * UMLS:C0224167 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyrohyoid ] * Wikipedia:Thyrohyoid_muscle * http://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001210.md b/md/UBERON/10/UBERON_0001210.md index 4682872ef1..11ae3ff5e6 100644 --- a/md/UBERON/10/UBERON_0001210.md +++ b/md/UBERON/10/UBERON_0001210.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001210 * *Label* = muscularis mucosae of small intestine - * *Definition* = A muscularis mucosa that is part of a small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -17,7 +17,7 @@ * FMA:15051 * MA:0002687 * SCTID:36401004 - * UMLS:C0227262 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Muscularis_Mucosa] + * UMLS:C0227262 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Muscularis_Mucosa ] * ncithesaurus:Small_Intestinal_Muscularis_Mucosa ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001310.md b/md/UBERON/10/UBERON_0001310.md index 6b3688fe7d..dd5ca75ed9 100644 --- a/md/UBERON/10/UBERON_0001310.md +++ b/md/UBERON/10/UBERON_0001310.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001310 * *Label* = umbilical artery - * *Definition* = The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_artery] + * *Definition* = The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_artery ] * *Comment* = Editor notes: todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships ## Synonyms - * a. umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * a. umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g * RETIRED_EHDAA2:0002106 * SCTID:261404000 - * UMLS:C0041632 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Umbilical_Artery] + * UMLS:C0041632 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Umbilical_Artery ] * Wikipedia:Umbilical_artery * http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png @@ -39,7 +39,7 @@ * [artery](../../UBERON/37/UBERON_0001637.md) * [umbilical blood vessel](../../UBERON/60/UBERON_0010260.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) ## Equivalencies @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001410.md b/md/UBERON/10/UBERON_0001410.md index 12f3be459b..56a176b99e 100644 --- a/md/UBERON/10/UBERON_0001410.md +++ b/md/UBERON/10/UBERON_0001410.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001410 * *Label* = common palmar digital artery - * *Definition* = Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_palmar_digital_artery] + * *Definition* = Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_palmar_digital_artery ] * *Comment* = the MA term, even though plural, represents the singular, as it is an isa child of artery ## Synonyms @@ -15,7 +15,7 @@ * FMA:22852 * MA:0001957 * SCTID:38396009 - * UMLS:C0226446 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Palmar_Digital_Artery] + * UMLS:C0226446 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Palmar_Digital_Artery ] * Wikipedia:Common_palmar_digital_artery * ncithesaurus:Common_Palmar_Digital_Artery @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001510.md b/md/UBERON/10/UBERON_0001510.md index 99bcb8c9d2..796b06e37b 100644 --- a/md/UBERON/10/UBERON_0001510.md +++ b/md/UBERON/10/UBERON_0001510.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001510 * *Label* = skin of knee - * *Definition* = A zone of skin that is part of a knee [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a knee [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * knee skin - * knee zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * knee zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:37800 * MA:0000668 * SCTID:181552001 - * UMLS:C0222275 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Knee_Skin] + * UMLS:C0222275 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Knee_Skin ] * ncithesaurus:Knee_Skin ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001610.md b/md/UBERON/10/UBERON_0001610.md index 1ccb4e007a..a3e87d2e91 100644 --- a/md/UBERON/10/UBERON_0001610.md +++ b/md/UBERON/10/UBERON_0001610.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001610 * *Label* = lingual artery - * *Definition* = The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_artery] + * *Definition* = The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lingual branch of external carotid artery - * arteria lingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria lingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0001992 * OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA * SCTID:181327002 - * UMLS:C0226104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lingual_Artery] + * UMLS:C0226104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lingual_Artery ] * Wikipedia:Lingual_artery * http://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Lingual_artery.PNG/200px-Lingual_artery.PNG @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the external carotid which supplies blood to the tongue.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of external carotid (AAO:0010218)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001710.md b/md/UBERON/10/UBERON_0001710.md index 7203261a04..c7a6d0e442 100644 --- a/md/UBERON/10/UBERON_0001710.md +++ b/md/UBERON/10/UBERON_0001710.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001710 * *Label* = lower jaw region - * *Definition* = Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_jaw] + * *Definition* = Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_jaw ] * *Comment* = AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head ## Synonyms - * mandibular part of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59398] + * mandibular part of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59398 ] * lower part of mouth * mandibular series @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Inferior mandibular arch located on the anterior and lateral sides of the skull.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001810.md b/md/UBERON/10/UBERON_0001810.md index b65f5ede1b..b1da18d5f4 100644 --- a/md/UBERON/10/UBERON_0001810.md +++ b/md/UBERON/10/UBERON_0001810.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001810 * *Label* = nerve plexus - * *Definition* = Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5901[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system_plexus] + * *Definition* = Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5901, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system_plexus ] * *Comment* = in FMA this is a subtype of junction rather than tissue ## Synonyms @@ -18,7 +18,7 @@ * FMA:5901 * MA:0002407 * SCTID:122455009 - * UMLS:C0501403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nerve_Plexus] + * UMLS:C0501403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nerve_Plexus ] * Wikipedia:Nervous_system_plexus * ncithesaurus:Nerve_Plexus @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0001910.md b/md/UBERON/10/UBERON_0001910.md index a2a0547664..1780bd4f86 100644 --- a/md/UBERON/10/UBERON_0001910.md +++ b/md/UBERON/10/UBERON_0001910.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001910 * *Label* = medial forebrain bundle - * *Definition* = The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_forebrain_bundle] + * *Definition* = The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_forebrain_bundle ] * *Comment* = AO notes: a pathway in NCIT ## Synonyms * medial forebrain fasciculus * telencephalic medial fasciculus - * mfb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_908[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus longitudinalis telencephali medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:433[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus medialis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_forebrain_bundle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus medialis telencephalicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:433[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus prosencephalicus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:433[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * median forebrain bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:433] + * mfb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_908, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus longitudinalis telencephali medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:433, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus medialis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_forebrain_bundle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus medialis telencephalicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:433, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus prosencephalicus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:433, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * median forebrain bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:433 ] ## Cross-references @@ -24,10 +24,10 @@ * GAID:736 * MESH:A08.612.492 * NIF_GrossAnatomy:birnlex_908 - * NeuroNames:433 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_908] + * NeuroNames:433 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_908 ] * TAO:0005111 - * UMLS:C0025055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_908] - * UMLS:C0025055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Forebrain_Bundle] + * UMLS:C0025055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_908 ] + * UMLS:C0025055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Forebrain_Bundle ] * Wikipedia:Medial_forebrain_bundle * ZFA:0005111 * ncithesaurus:Medial_Forebrain_Bundle @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002010.md b/md/UBERON/10/UBERON_0002010.md index 4e1f1e052f..e48a9aaa0c 100644 --- a/md/UBERON/10/UBERON_0002010.md +++ b/md/UBERON/10/UBERON_0002010.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002010 * *Label* = celiac nerve plexus - * *Definition* = The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_plexus] + * *Definition* = The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * celiac plexus * coeliac plexus - * plexus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6630[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus nervosus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6630[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6630, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus nervosus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6630, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * coeliac nerve plexus - * plexus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * solar plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.050.050.150] + * plexus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * solar plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.050.050.150 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002110.md b/md/UBERON/10/UBERON_0002110.md index cb98e30a9f..3c2aa63d75 100644 --- a/md/UBERON/10/UBERON_0002110.md +++ b/md/UBERON/10/UBERON_0002110.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002110 * *Label* = gallbladder - * *Definition* = a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7202[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gallbladder] + * *Definition* = a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7202, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gallbladder ] * *Comment* = Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988) ## Synonyms * gall bladder - * vesica fellea; vesica biliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gallbladder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vesica fellea; vesica biliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gallbladder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA * SCTID:181269000 * TAO:0000208 - * UMLS:C0016976 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gallbladder] + * UMLS:C0016976 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gallbladder ] * VHOG:0000221 * Wikipedia:Gallbladder * XAO:0000135 @@ -71,8 +71,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The presence of a gallbladder appears to be a primitive trait. It is found in most fish and all adult reptiles and amphibians and has been well conserved in mammals, for the most part.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002210.md b/md/UBERON/10/UBERON_0002210.md index 7674a9ec30..090f45aeef 100644 --- a/md/UBERON/10/UBERON_0002210.md +++ b/md/UBERON/10/UBERON_0002210.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002210 * *Label* = syndesmosis - * *Definition* = Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Syndesmosis] + * *Definition* = Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Syndesmosis ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002310.md b/md/UBERON/10/UBERON_0002310.md index 8bf58e9b3a..d851d2c469 100644 --- a/md/UBERON/10/UBERON_0002310.md +++ b/md/UBERON/10/UBERON_0002310.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002310 * *Label* = hippocampus fimbria - * *Definition* = Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1502] + * *Definition* = Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1502 ] * *Comment* = Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM) ## Synonyms * fimbria hippocampus - * fimbria of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83866] - * fimbria of the fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1502] - * fimbria-fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1502] - * hippocampal fimbria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009324] + * fimbria of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83866 ] + * fimbria of the fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1502 ] + * fimbria-fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1502 ] + * hippocampal fimbria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009324 ] * neuraxis fimbria - * fimbria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1502] - * fimbria hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:187[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fimbria (Vieussens) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:187] - * fimbria fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:187[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fimbria hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fimbria_of_hippocampus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fimbria of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:187] - * fimbria of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:187] + * fimbria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1502 ] + * fimbria hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:187, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fimbria (Vieussens) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:187 ] + * fimbria fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:187, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fimbria hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fimbria_of_hippocampus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fimbria of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:187 ] + * fimbria of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:187 ] ## Cross-references @@ -30,10 +30,10 @@ * FMA:83866 * MA:0000949 * NIF_GrossAnatomy:birnlex_1502 - * NeuroNames:187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1502] + * NeuroNames:187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1502 ] * SCTID:369096000 - * UMLS:C0152315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1502] - * UMLS:C0152315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fimbria] + * UMLS:C0152315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1502 ] + * UMLS:C0152315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fimbria ] * Wikipedia:Fimbria_of_hippocampus * http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray749.png/200px-Gray749.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002410.md b/md/UBERON/10/UBERON_0002410.md index 479e846ae0..ba6ae1ee93 100644 --- a/md/UBERON/10/UBERON_0002410.md +++ b/md/UBERON/10/UBERON_0002410.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002410 * *Label* = autonomic nervous system - * *Definition* = The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Autonomic_nervous_system] + * *Definition* = The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Autonomic_nervous_system ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * visceral nervous system * ANS - * divisio autonomica systematis nervosi peripherici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Autonomic_nervous_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * divisio autonomica systematis nervosi peripherici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Autonomic_nervous_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * NeuroNames:2054 * SCTID:362481007 * TAO:0001574 - * UMLS:C0004388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1123] - * UMLS:C0004388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Autonomic_Nervous_System] - * UMLS:C1305381 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1123] + * UMLS:C0004388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1123 ] + * UMLS:C0004388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Autonomic_Nervous_System ] + * UMLS:C1305381 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1123 ] * VHOG:0000396 * Wikipedia:Autonomic_nervous_system * ZFA:0001574 @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the peripheral nervous system which regulates involuntary functions of the body and consists of the sympathetic and parasympathetic system.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002510.md b/md/UBERON/10/UBERON_0002510.md index 4d65faf80f..3e920875e0 100644 --- a/md/UBERON/10/UBERON_0002510.md +++ b/md/UBERON/10/UBERON_0002510.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002510 * *Label* = anterior fontanel - * *Definition* = In humans, the anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_fontanelle] + * *Definition* = In humans, the anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_fontanelle ] * *Comment* = AO notes TAO:0001739 anterior cranial fontanel is 'Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar' ## Synonyms - * anterior fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75439] - * bregmatic fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_fontanelle] - * fonticulus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_fontanelle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * frontal fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_fontanelle] + * anterior fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75439 ] + * bregmatic fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_fontanelle ] + * fonticulus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_fontanelle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * frontal fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_fontanelle ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [coronal suture](../../UBERON/89/UBERON_0002489.md) and [connects](../../ts/core#connects.md) some [frontal suture](../../UBERON/90/UBERON_0002490.md) and [connects](../../ts/core#connects.md) some [sagittal suture](../../UBERON/92/UBERON_0002492.md) and [fontanelle](../../UBERON/21/UBERON_0002221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002610.md b/md/UBERON/10/UBERON_0002610.md index a446cf6fe4..dd7e4595a4 100644 --- a/md/UBERON/10/UBERON_0002610.md +++ b/md/UBERON/10/UBERON_0002610.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002610 * *Label* = cochlear nuclear complex - * *Definition* = The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_nuclei] + * *Definition* = The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_nuclei ] * *Comment* = Location notes: WP says "The CN is located at the dorso-lateral side of the brainstem, spanning the junction of the pons and medulla.". MA places this in pons, other sources the medulla ## Synonyms - * cochlear nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72240] - * corticomedial amygdaloid area cortical nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Co] - * nuclei cochleares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cochlear nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72240 ] + * corticomedial amygdaloid area cortical nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Co ] + * nuclei cochleares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,9 +21,9 @@ * EV:0100260 * FMA:72240 * NIF_GrossAnatomy:birnlex_1151 - * NeuroNames:720 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1151] - * UMLS:C0152411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1151] - * UMLS:C0152411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cochlear_Nuclei] + * NeuroNames:720 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1151 ] + * UMLS:C0152411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1151 ] + * UMLS:C0152411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cochlear_Nuclei ] * Wikipedia:Cochlear_nuclei * http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002710.md b/md/UBERON/10/UBERON_0002710.md index 9aed5226d5..39ccf3ca4a 100644 --- a/md/UBERON/10/UBERON_0002710.md +++ b/md/UBERON/10/UBERON_0002710.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002710 * *Label* = cingulate sulcus - * *Definition* = The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cingulate_sulcus] + * *Definition* = The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cingulate_sulcus ] ## Synonyms - * calloso-marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83748] - * callosomarginal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83748] - * callosomarginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83748] - * cingulate fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83748] - * sulcus callosomarginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1468] - * sulcus cingulatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1468] - * sulcus cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1468] - * cgs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1468[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cingulate_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * calloso-marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83748 ] + * callosomarginal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83748 ] + * callosomarginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83748 ] + * cingulate fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83748 ] + * sulcus callosomarginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1468 ] + * sulcus cingulatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1468 ] + * sulcus cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1468 ] + * cgs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1468, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cingulate_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,9 +24,9 @@ * BM:Tel-Cx-CGS * FMA:83748 * NIF_GrossAnatomy:birnlex_1468 - * NeuroNames:43 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1468] + * NeuroNames:43 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1468 ] * SCTID:279350000 - * UMLS:C0228189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1468] + * UMLS:C0228189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1468 ] * Wikipedia:Cingulate_sulcus * http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray727_cingulate_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray727_cingulate_sulcus.svg/200px-Gray727_cingulate_sulcus.svg.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002810.md b/md/UBERON/10/UBERON_0002810.md index 23f9020b10..0fe0a8eadd 100644 --- a/md/UBERON/10/UBERON_0002810.md +++ b/md/UBERON/10/UBERON_0002810.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002810 * *Label* = right frontal lobe - * *Definition* = A frontal cortex that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A frontal cortex that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:72969 * NIF_GrossAnatomy:birnlex_1786 * SCTID:314141005 - * UMLS:C1281954 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1786] + * UMLS:C1281954 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1786 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [frontal cortex](../../UBERON/70/UBERON_0001870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0002910.md b/md/UBERON/10/UBERON_0002910.md index 841f7b485d..97710b1ed0 100644 --- a/md/UBERON/10/UBERON_0002910.md +++ b/md/UBERON/10/UBERON_0002910.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002910 * *Label* = posterior ascending limb of lateral sulcus - * *Definition* = The term terminal ascending limb of the lateral fissure refers to one of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 ). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:104] + * *Definition* = The term terminal ascending limb of the lateral fissure refers to one of two branches of the lateral fissure at its posterior terminus identified by dissection in the human. The other is the terminal descending limb of the lateral fissure ( Ono-1990 ). It is not found in the macaque ( Martin-2000 ), the rat ( Swanson-2004 ) or the mouse ( Hof-2000 ). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:104 ] ## Synonyms * ascending terminal ramus of sylvian fissure - * posterior ascending limb of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83761] - * posterior ramus of lateral cerebral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83761] - * ramus posterior ascendens fissurae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4028] - * ramus posterior sulci lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83761[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4028[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus lateralis, ramus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:104[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * terminal ascending limb of sylvian fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:104] - * terminal ascending limb of the lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:104] + * posterior ascending limb of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83761 ] + * posterior ramus of lateral cerebral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83761 ] + * ramus posterior ascendens fissurae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4028 ] + * ramus posterior sulci lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83761, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4028, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus lateralis, ramus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:104, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * terminal ascending limb of sylvian fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:104 ] + * terminal ascending limb of the lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:104 ] ## Cross-references * BAMS:pals * FMA:83761 * NIF_GrossAnatomy:birnlex_4028 - * NeuroNames:104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4028] - * UMLS:C0262310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4028] + * NeuroNames:104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4028 ] + * UMLS:C0262310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4028 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003010.md b/md/UBERON/10/UBERON_0003010.md index 3af4ff5efe..9326a5d461 100644 --- a/md/UBERON/10/UBERON_0003010.md +++ b/md/UBERON/10/UBERON_0003010.md @@ -6,22 +6,22 @@ ## Synonyms - * deep pes lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72459] - * lateral pontine bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72459] + * deep pes lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72459 ] + * lateral pontine bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72459 ] * laterale haubenfussschleife * laterale pontine buendel - * lpl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_902[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculi laterales pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:531[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pes lemnisci profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:531[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pes lemniscus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:531[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lpl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_902, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculi laterales pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:531, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pes lemnisci profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:531, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pes lemniscus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:531, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:lpl * FMA:72459 * NIF_GrossAnatomy:birnlex_902 - * NeuroNames:531 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_902] - * UMLS:C0175409 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_902] + * NeuroNames:531 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_902 ] + * UMLS:C0175409 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_902 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003110.md b/md/UBERON/10/UBERON_0003110.md index 8bec5a345f..f6d58b5869 100644 --- a/md/UBERON/10/UBERON_0003110.md +++ b/md/UBERON/10/UBERON_0003110.md @@ -7,7 +7,7 @@ ## Synonyms - * cranial vault [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000189] + * cranial vault [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000189 ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is a posterolateral part of the neurocranium and structurally supports the vestibuloauditory system.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003210.md b/md/UBERON/10/UBERON_0003210.md index 2872c2073b..ae04201fad 100644 --- a/md/UBERON/10/UBERON_0003210.md +++ b/md/UBERON/10/UBERON_0003210.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003210 * *Label* = blood-cerebrospinal fluid barrier - * *Definition* = barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006088] + * *Definition* = barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006088 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003310.md b/md/UBERON/10/UBERON_0003310.md index 8de6497ddd..ea9e1860dd 100644 --- a/md/UBERON/10/UBERON_0003310.md +++ b/md/UBERON/10/UBERON_0003310.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003310 * *Label* = floor plate of metencephalon - * *Definition* = A floor plate that is part of a metencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a metencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epencephalon-2 floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epencephalon-2 floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000784] - * floor plate of epencephalon-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of epencephalon-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metencephalon floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000784] + * epencephalon-2 floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epencephalon-2 floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000784 ] + * floor plate of epencephalon-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of epencephalon-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metencephalon floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000784 ] ## Cross-references @@ -31,15 +31,14 @@ ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [regional part of metencephalon](../../UBERON/80/UBERON_0002680.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [metencephalon](../../UBERON/95/UBERON_0001895.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metencephalon](../../UBERON/95/UBERON_0001895.md) ## Other Logical Axioms @@ -48,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003410.md b/md/UBERON/10/UBERON_0003410.md index 74aee696d7..aed5f860c7 100644 --- a/md/UBERON/10/UBERON_0003410.md +++ b/md/UBERON/10/UBERON_0003410.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003410 * *Label* = oropharyngeal gland - * *Definition* = A gland that is part of a oropharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a oropharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gland of oral part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of oropharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25095] - * oral part of pharynx gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gland of oral part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of oropharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25095 ] + * oral part of pharynx gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oropharynx](../../UBERON/29/UBERON_0001729.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003510.md b/md/UBERON/10/UBERON_0003510.md index 9dbc7885b8..24478bdbfe 100644 --- a/md/UBERON/10/UBERON_0003510.md +++ b/md/UBERON/10/UBERON_0003510.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003510 * *Label* = eyelid blood vessel - * *Definition* = A blood vessel that is part of a eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blepharon blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blepharon blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003610.md b/md/UBERON/10/UBERON_0003610.md index 64c4a08468..c687806f36 100644 --- a/md/UBERON/10/UBERON_0003610.md +++ b/md/UBERON/10/UBERON_0003610.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003610 * *Label* = heart elastic tissue - * *Definition* = the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009863] + * *Definition* = the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009863 ] ## Synonyms - * cardiac elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009863] - * elastic connective tissue of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009863 ] + * elastic connective tissue of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003710.md b/md/UBERON/10/UBERON_0003710.md index 3a3734d57c..4f04b3d899 100644 --- a/md/UBERON/10/UBERON_0003710.md +++ b/md/UBERON/10/UBERON_0003710.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003710 * *Label* = vasa vasorum - * *Definition* = Nutrient blood vessels which supply the walls of large arteries or veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.231.836[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Vasa_vasorum] + * *Definition* = Nutrient blood vessels which supply the walls of large arteries or veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.231.836, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Vasa_vasorum ] * *Comment* = Taxon notes: The aorta of swine contains a vaso vasorum like humans - http://www.nal.usda.gov/awic/pubs/swine/swine.htm#art ## Synonyms @@ -15,7 +15,7 @@ * GAID:526 * MESH:A07.231.836 * SCTID:7524009 - * UMLS:C0042367 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vasa_Vasorum] + * UMLS:C0042367 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vasa_Vasorum ] * ncithesaurus:Vasa_Vasorum ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0003910.md b/md/UBERON/10/UBERON_0003910.md index 6f4138f6c8..198baadc67 100644 --- a/md/UBERON/10/UBERON_0003910.md +++ b/md/UBERON/10/UBERON_0003910.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003910 * *Label* = splenic sinusoid - * *Definition* = wide vessels in the spleen that drain into trabecular veins[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Red_pulp#Sinusoids] + * *Definition* = wide vessels in the spleen that drain into trabecular veins[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Red_pulp#Sinusoids ] * *Comment* = Taxon notes: Whereas man and the rat are in the "sinusal" group, the mouse belongs in the "nonsinusal" group. The red pulp of spleens of rat, dog, man, and many other mammals contains an elaborate plexus of sinuses; that of mouse, cat, pig and others has no true sinuses and relatively few veins leading from the meshes into collecting veins - http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml ## Synonyms - * sinusoidal blood vessel of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sinusoid of red pulp of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63199] + * sinusoidal blood vessel of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sinusoid of red pulp of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63199 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [red pulp of spleen](../../UBERON/50/UBERON_0001250.md) and [sinusoid](../../UBERON/09/UBERON_0003909.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004010.md b/md/UBERON/10/UBERON_0004010.md index c8dfd60b04..bd322976a3 100644 --- a/md/UBERON/10/UBERON_0004010.md +++ b/md/UBERON/10/UBERON_0004010.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004010 * *Label* = primary muscle spindle - * *Definition* = the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000991] + * *Definition* = the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000991 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004110.md b/md/UBERON/10/UBERON_0004110.md index 54e575697a..a01a6733f7 100644 --- a/md/UBERON/10/UBERON_0004110.md +++ b/md/UBERON/10/UBERON_0004110.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004110 * *Label* = midnasal cavity - * *Definition* = An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0010641] + * *Definition* = An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0010641 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004410.md b/md/UBERON/10/UBERON_0004410.md index 53ab077945..4ed55cc346 100644 --- a/md/UBERON/10/UBERON_0004410.md +++ b/md/UBERON/10/UBERON_0004410.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004410 * *Label* = distal epiphysis of fibula - * *Definition* = A distal epiphysis that is part of a fibula [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a fibula [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33732] - * lower end of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33732] + * distal end of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33732 ] + * lower end of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33732 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fibula](../../UBERON/46/UBERON_0001446.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004510.md b/md/UBERON/10/UBERON_0004510.md index 0dacffb479..c36ab02313 100644 --- a/md/UBERON/10/UBERON_0004510.md +++ b/md/UBERON/10/UBERON_0004510.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004510 * *Label* = skeletal muscle tissue of pectoralis major - * *Definition* = A portion of skeletal muscle tissue that is part of a pectoralis major [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a pectoralis major [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoralis major](../../UBERON/81/UBERON_0002381.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004610.md b/md/UBERON/10/UBERON_0004610.md index 2c54317996..801092d712 100644 --- a/md/UBERON/10/UBERON_0004610.md +++ b/md/UBERON/10/UBERON_0004610.md @@ -3,19 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004610 * *Label* = rib 11 - * *Definition* = The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eleventh_rib] + * *Definition* = The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eleventh_rib ] * *Comment* = elements are to be defined spatially/topologically ## Synonyms - * eleventh rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8499] + * costa XI [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eleventh rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8499 ] ## Cross-references * FMA:8499 * MA:0001411 * SCTID:244666004 - * UMLS:C1709947 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_11] + * UMLS:C1709947 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_11 ] * Wikipedia:Eleventh_rib * http://upload.wikimedia.org/wikipedia/commons/d/db/Gray127.png * ncithesaurus:Rib_11 @@ -37,8 +38,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 11 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004710.md b/md/UBERON/10/UBERON_0004710.md index 9e3423cbff..147fbb80a1 100644 --- a/md/UBERON/10/UBERON_0004710.md +++ b/md/UBERON/10/UBERON_0004710.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004710 * *Label* = pectoral appendage - * *Definition* = Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000150-modified] + * *Definition* = Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000150-modified ] ## Synonyms - * anterior limb/fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * anterior paired appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000148] - * forelimb - pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001753] - * forelimb or pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * forelimb/pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pectoral limb/fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * anterior limb/fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * anterior paired appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000148 ] + * forelimb - pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001753 ] + * forelimb or pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * forelimb/pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pectoral limb/fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [paired limb/fin](../../UBERON/08/UBERON_0004708.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = While the skeletons of teleost pectoral fins and tetrapod forelimbs are homologous at the level of endoskeletal radials, teleosts and tetrapods do not share homologous skeletal elements at the level of 'individuated' pro-, meso-, and metapterygia. Among osteichthyans, only basal actinopterygians retain the full complement of elements present in non-osteichthyan gnathostomes.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009875 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004810.md b/md/UBERON/10/UBERON_0004810.md index b828a62eac..f763924ffc 100644 --- a/md/UBERON/10/UBERON_0004810.md +++ b/md/UBERON/10/UBERON_0004810.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004810 * *Label* = nephron tubule epithelium - * *Definition* = An epithelium that is part of a nephron tubule [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a nephron tubule [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of nephron tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of renal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of tubulus renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of nephron tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of renal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of tubulus renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney tubule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001681] - * nephron tubule epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nephron tubule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal tubule epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tubulus renalis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tubulus renalis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of nephron tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of renal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of tubulus renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of nephron tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of renal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of tubulus renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney tubule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001681 ] + * nephron tubule epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nephron tubule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal tubule epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tubulus renalis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tubulus renalis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001681 - * UMLS:C1709902 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Tubule_Epithelium] + * UMLS:C1709902 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Tubule_Epithelium ] * ncithesaurus:Renal_Tubule_Epithelium ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nephron tubule](../../UBERON/31/UBERON_0001231.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0004910.md b/md/UBERON/10/UBERON_0004910.md index 13e6fd18ef..50acb607b5 100644 --- a/md/UBERON/10/UBERON_0004910.md +++ b/md/UBERON/10/UBERON_0004910.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004910 * *Label* = epithelium of male gonad - * *Definition* = An epithelium surrounding a testis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium surrounding a testis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts ## Synonyms - * testis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * testis sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004955[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * testis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * testis sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004955, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005010.md b/md/UBERON/10/UBERON_0005010.md index 0e50d7a5cb..5ccc66ffc3 100644 --- a/md/UBERON/10/UBERON_0005010.md +++ b/md/UBERON/10/UBERON_0005010.md @@ -3,48 +3,48 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005010 * *Label* = mucosa of neck of urinary bladder - * *Definition* = A mucosa that is part of a neck of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a neck of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bladder neck mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder neck mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck of urinary bladder](../../UBERON/58/UBERON_0001258.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005110.md b/md/UBERON/10/UBERON_0005110.md index cbc152fb3b..59e9effdab 100644 --- a/md/UBERON/10/UBERON_0005110.md +++ b/md/UBERON/10/UBERON_0005110.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005110 * *Label* = metanephric nephron - * *Definition* = A metanephric nephron is the functional unit of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072273] + * *Definition* = A metanephric nephron is the functional unit of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072273 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron](../../UBERON/85/UBERON_0001285.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The primitive form of the vertebrate nephron consists of a vascular filtration surface overlain with podocytes, a specialized coelomic cavity to receive the ultrafiltrate, and a tubule for modification to final urine. Although previously thought to be unique to the vertebrates, this design is now known to be widespread among invertebrates, including most of the protochordates, and especially their larvae.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005142 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005310.md b/md/UBERON/10/UBERON_0005310.md index eea5f3b4e9..ed0c9d40f5 100644 --- a/md/UBERON/10/UBERON_0005310.md +++ b/md/UBERON/10/UBERON_0005310.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005310 * *Label* = pronephric nephron tubule - * *Definition* = The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039020] + * *Definition* = The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039020 ] ## Synonyms - * pronephric tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001558] + * pronephric tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001558 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron tubule](../../UBERON/31/UBERON_0001231.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephric nephron](../../UBERON/09/UBERON_0005309.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. Drummond, 2000.[TAO] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_32524 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005410.md b/md/UBERON/10/UBERON_0005410.md index e9cce5389a..c9f63252f2 100644 --- a/md/UBERON/10/UBERON_0005410.md +++ b/md/UBERON/10/UBERON_0005410.md @@ -7,7 +7,7 @@ ## Synonyms - * auditory capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001500] + * auditory capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001500 ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005610.md b/md/UBERON/10/UBERON_0005610.md index 6df77c7064..253c35e4fa 100644 --- a/md/UBERON/10/UBERON_0005610.md +++ b/md/UBERON/10/UBERON_0005610.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005610 * *Label* = iliac vein - * *Definition* = Any of the three veins including the common, external and internal iliac veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Iliac_Vein] + * *Definition* = Any of the three veins including the common, external and internal iliac veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Iliac_Vein ] ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0000811 * MA:0002142 * MESH:A07.231.908.427 - * UMLS:C0020888 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliac_Vein] + * UMLS:C0020888 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliac_Vein ] * ncithesaurus:Iliac_Vein ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005710.md b/md/UBERON/10/UBERON_0005710.md index 52b8715cb3..ac422c2d3e 100644 --- a/md/UBERON/10/UBERON_0005710.md +++ b/md/UBERON/10/UBERON_0005710.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005710 * *Label* = lower jaw incisor epithelium - * *Definition* = A dental epithelium that is part of a lower jaw incisor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dental epithelium that is part of a lower jaw incisor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dental epithelium](../../UBERON/43/UBERON_0003843.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw incisor](../../UBERON/51/UBERON_0003451.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005810.md b/md/UBERON/10/UBERON_0005810.md index 23588fc36b..ea87bc2c4a 100644 --- a/md/UBERON/10/UBERON_0005810.md +++ b/md/UBERON/10/UBERON_0005810.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005810 * *Label* = cervical vertebra 1 anterior tubercle - * *Definition* = the conical ventral projection on the arch of the atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004658] + * *Definition* = the conical ventral projection on the arch of the atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004658 ] * *Comment* = TODO - check: anterior vs ventral; arch vs transverse process ## Synonyms - * anterior tubercle of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23991] - * atlas ventral tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002871] - * cervical vertebra 1 ventral tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002871] - * tubercle of anterior arch of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23991] - * tuberculum anterius (atlas) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23991] - * ventral tubercle of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010731] + * anterior tubercle of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23991 ] + * atlas ventral tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002871 ] + * cervical vertebra 1 ventral tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002871 ] + * tubercle of anterior arch of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23991 ] + * tuberculum anterius (atlas) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23991 ] + * ventral tubercle of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010731 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0005910.md b/md/UBERON/10/UBERON_0005910.md index c9d9f5dbb7..ed5bd61c8b 100644 --- a/md/UBERON/10/UBERON_0005910.md +++ b/md/UBERON/10/UBERON_0005910.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005910 * *Label* = transitional epithelium - * *Definition* = Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transitional_epithelium] + * *Definition* = Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transitional_epithelium ] * *Comment* = see comments for urothelium ## Synonyms - * epithelium transitionale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63914] - * urothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28089[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transitional_epithelium] + * epithelium transitionale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63914 ] + * urothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28089, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transitional_epithelium ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:63914 * MESH:A10.272.850 * SCTID:30117005 - * UMLS:C0225339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transitional_Epithelium] + * UMLS:C0225339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transitional_Epithelium ] * Wikipedia:Transitional_epithelium * http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png * ncithesaurus:Transitional_Epithelium @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0006010.md b/md/UBERON/10/UBERON_0006010.md index c44a046d75..29740af8ca 100644 --- a/md/UBERON/10/UBERON_0006010.md +++ b/md/UBERON/10/UBERON_0006010.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006010 * *Label* = hyaloid canal - * *Definition* = Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyaloid_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/Hyaloid+canal] + * *Definition* = Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyaloid_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/Hyaloid+canal ] * *Comment* = in FMA, this is_a FMA:67388 portion of vitreous humor ## Synonyms - * Cloquet's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58837] - * Stilling's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58837] - * canal of Cloquet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58837] + * Cloquet's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58837 ] + * Stilling's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58837 ] + * canal of Cloquet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58837 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0006210.md b/md/UBERON/10/UBERON_0006210.md index 8ff1be866c..08b3018024 100644 --- a/md/UBERON/10/UBERON_0006210.md +++ b/md/UBERON/10/UBERON_0006210.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0006310.md b/md/UBERON/10/UBERON_0006310.md index a79adaeb31..cba1d0012b 100644 --- a/md/UBERON/10/UBERON_0006310.md +++ b/md/UBERON/10/UBERON_0006310.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0006610.md b/md/UBERON/10/UBERON_0006610.md index 7c23f4a9ea..0e9b7fe58d 100644 --- a/md/UBERON/10/UBERON_0006610.md +++ b/md/UBERON/10/UBERON_0006610.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006610 * *Label* = tunica albuginea - * *Definition* = White covering over one of: penis, testicles or ovaries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea] + * *Definition* = White covering over one of: penis, testicles or ovaries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea ] ## Synonyms - * tunica albuginea corporis spongiosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_%28penis%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica albuginea corporum cavernosorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_%28penis%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica albuginea corporis spongiosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_%28penis%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica albuginea corporum cavernosorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_%28penis%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0006810.md b/md/UBERON/10/UBERON_0006810.md index 08b974821d..4683b68273 100644 --- a/md/UBERON/10/UBERON_0006810.md +++ b/md/UBERON/10/UBERON_0006810.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006810 * *Label* = olecranon - * *Definition* = The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olecranon] + * *Definition* = The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olecranon ] * *Comment* = Check AAO ## Synonyms - * olecranon process of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olecranon] - * olecranon process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olecranon] - * ulnar process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000843] + * olecranon process of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olecranon ] + * olecranon process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olecranon ] + * ulnar process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000843 ] ## Cross-references * AAO:0000843 * FMA:39795 * SCTID:181949001 - * UMLS:C0223710 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olecranon] + * UMLS:C0223710 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olecranon ] * Wikipedia:Olecranon * http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png * ncithesaurus:Olecranon @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Large and thick process situated at the proximal (upper) end of the ulna. Its inner face forms the medial articular surface that articulates with the humeral head.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0007010.md b/md/UBERON/10/UBERON_0007010.md index 4154f9a8ca..f7ed51f977 100644 --- a/md/UBERON/10/UBERON_0007010.md +++ b/md/UBERON/10/UBERON_0007010.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007010 * *Label* = cleaving embryo - * *Definition* = Organism at the cleavage stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Organism at the cleavage stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [existence_ends_with](../../core#existence/th/core#existence_ends_with.md) some [cleavage stage](../../UBERON/07/UBERON_0000107.md) and [existence_starts_with](../../core#existence/th/core#existence_starts_with.md) some [cleavage stage](../../UBERON/07/UBERON_0000107.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0007610.md b/md/UBERON/10/UBERON_0007610.md index 1c2cdfbdfa..4ded2b67ce 100644 --- a/md/UBERON/10/UBERON_0007610.md +++ b/md/UBERON/10/UBERON_0007610.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007610 * *Label* = tibial artery - * *Definition* = The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.231.114.895] + * *Definition* = The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and pes. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.231.114.895 ] ## Synonyms @@ -14,7 +14,7 @@ * MA:0002067 * MESH:A07.231.114.895 * SCTID:181351007 - * UMLS:C0085427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibial_Artery] + * UMLS:C0085427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibial_Artery ] * ncithesaurus:Tibial_Artery ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0007710.md b/md/UBERON/10/UBERON_0007710.md index 81a47f7091..a29c47b310 100644 --- a/md/UBERON/10/UBERON_0007710.md +++ b/md/UBERON/10/UBERON_0007710.md @@ -7,10 +7,10 @@ ## Synonyms - * nucleus of the lateral lemniscus, horizontal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:NLLh] - * intermediate nucleus of the lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ILL] - * nucleus of the lateral lemniscus horizontal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NLLh] - * nucleus of the lateral lemniscus horizontal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Nllh] + * nucleus of the lateral lemniscus, horizontal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:NLLh ] + * intermediate nucleus of the lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ILL ] + * nucleus of the lateral lemniscus horizontal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NLLh ] + * nucleus of the lateral lemniscus horizontal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Nllh ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0008310.md b/md/UBERON/10/UBERON_0008310.md index c96e02b43b..81b40e34a1 100644 --- a/md/UBERON/10/UBERON_0008310.md +++ b/md/UBERON/10/UBERON_0008310.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008310 * *Label* = nasopharyngeal gland - * *Definition* = A gland that is part of a nasopharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a nasopharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0008810.md b/md/UBERON/10/UBERON_0008810.md index 5faf66146c..3be3815370 100644 --- a/md/UBERON/10/UBERON_0008810.md +++ b/md/UBERON/10/UBERON_0008810.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008810 * *Label* = nasopalatine nerve - * *Definition* = One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopalatine_nerve] + * *Definition* = One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopalatine_nerve ] ## Synonyms - * Scarpa's nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52797] - * naso-palatine nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopalatine_nerve] - * nasopalatine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopalatine_nerve] - * nasopalatine nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopalatine_nerve] - * nervus nasopalatinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopalatine_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Scarpa's nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52797 ] + * naso-palatine nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopalatine_nerve ] + * nasopalatine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopalatine_nerve ] + * nasopalatine nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopalatine_nerve ] + * nervus nasopalatinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopalatine_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0009010.md b/md/UBERON/10/UBERON_0009010.md index fdb77c54f3..3265eb7d2e 100644 --- a/md/UBERON/10/UBERON_0009010.md +++ b/md/UBERON/10/UBERON_0009010.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009010 * *Label* = periurethral tissue - * *Definition* = Tissue around the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005081] + * *Definition* = Tissue around the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005081 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0009210.md b/md/UBERON/10/UBERON_0009210.md index d2bd63d177..0ffe4cea30 100644 --- a/md/UBERON/10/UBERON_0009210.md +++ b/md/UBERON/10/UBERON_0009210.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009210 * *Label* = pharyngeal membrane - * *Definition* = a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] + * *Definition* = a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references - * UMLS:C1519040 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Membrane] + * UMLS:C1519040 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Membrane ] * ncithesaurus:Pharyngeal_Membrane ## Subsets @@ -20,10 +20,11 @@ ## Superclasses * [embryonic structure](../../UBERON/50/UBERON_0002050.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal system](../../UBERON/14/UBERON_0008814.md) * [has_part](../../BFO/51/BFO_0000051.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) * [has_part](../../BFO/51/BFO_0000051.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) ## Equivalencies @@ -33,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0009610.md b/md/UBERON/10/UBERON_0009610.md index 31d76aea86..3b8fceb2a4 100644 --- a/md/UBERON/10/UBERON_0009610.md +++ b/md/UBERON/10/UBERON_0009610.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009610 * *Label* = forebrain neural plate - * *Definition* = A neural plate that develops_from a future forebrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural plate that develops_from a future forebrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [future forebrain](../../UBERON/40/UBERON_0006240.md) and [neural plate](../../UBERON/75/UBERON_0003075.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0009910.md b/md/UBERON/10/UBERON_0009910.md index 9e995b1c44..f9c03f2e4a 100644 --- a/md/UBERON/10/UBERON_0009910.md +++ b/md/UBERON/10/UBERON_0009910.md @@ -6,7 +6,7 @@ ## Synonyms - * PLPM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005042] + * PLPM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005042 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010010.md b/md/UBERON/10/UBERON_0010010.md index dd600fed88..1bb724ef36 100644 --- a/md/UBERON/10/UBERON_0010010.md +++ b/md/UBERON/10/UBERON_0010010.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010010 * *Label* = basal nucleus of telencephalon - * *Definition* = Subdivision of telencephalon which is actually several islands of neurons lying within the substantia innominata, located ventral to the basal ganglia and anterior to the hypothalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_basalis_of_Meynert] + * *Definition* = Subdivision of telencephalon which is actually several islands of neurons lying within the substantia innominata, located ventral to the basal ganglia and anterior to the hypothalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_basalis_of_Meynert ] * *Comment* = AO notes: MA has basal nucleus as synonym for BG. Function notes: rich in acetylcholine and choline acetyltransferase[WP]. Location notes: The NBM is inferior to the globus pallidus and within an area known as the substantia innominata ## Synonyms - * Meynert's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * basal magnocellular nucleus (substantia innominata) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * basal nuclei of Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1107] - * basal nucleus of Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * basal substance of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * ganglion of Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61887] - * nucleus basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1107] - * nucleus basalis of Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1107] - * substantia basalis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Barrington nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:B] - * anterior mamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MA] - * basal forebrain nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275] - * basal magnocellular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275] - * basal nucleus (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:B] - * magnocellular nucleus of the pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275] - * magnocellular preoptic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275] - * nucleus basalis (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_basalis_of_Meynert[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the horizontal limb of the diagonal band (Price-Powell) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:275] + * Meynert's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * basal magnocellular nucleus (substantia innominata) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * basal nuclei of Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1107 ] + * basal nucleus of Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * basal substance of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * ganglion of Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61887 ] + * nucleus basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1107 ] + * nucleus basalis of Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1107 ] + * substantia basalis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Barrington nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:B ] + * anterior mamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MA ] + * basal forebrain nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275 ] + * basal magnocellular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275 ] + * basal nucleus (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:B ] + * magnocellular nucleus of the pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275 ] + * magnocellular preoptic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275 ] + * nucleus basalis (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_basalis_of_Meynert, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the horizontal limb of the diagonal band (Price-Powell) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:275 ] ## Cross-references @@ -37,9 +37,9 @@ * BAMS:MCPO * FMA:61887 * NIF_GrossAnatomy:birnlex_1107 - * NeuroNames:275 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1107] + * NeuroNames:275 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1107 ] * SCTID:369109003 - * UMLS:C0004788 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1107] + * UMLS:C0004788 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1107 ] * Wikipedia:Nucleus_basalis_of_Meynert * http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010210.md b/md/UBERON/10/UBERON_0010210.md index 2be76593fb..64bda8eced 100644 --- a/md/UBERON/10/UBERON_0010210.md +++ b/md/UBERON/10/UBERON_0010210.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010210 * *Label* = blood clot - * *Definition* = A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000102[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thrombus] + * *Definition* = A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000102, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thrombus ] ## Synonyms - * thrombus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000102] + * thrombus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000102 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010310.md b/md/UBERON/10/UBERON_0010310.md index db95670df1..7fce425bd4 100644 --- a/md/UBERON/10/UBERON_0010310.md +++ b/md/UBERON/10/UBERON_0010310.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010310 * *Label* = nictitating membrane lamina - * *Definition* = thin cartilage element that stiffens the nictitating membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * *Definition* = thin cartilage element that stiffens the nictitating membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] * *Comment* = Taxon notes: these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001) ## Synonyms - * cartilago intercipiens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * cartilago intercipiens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nictitating membrane](../../UBERON/07/UBERON_0010207.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010410.md b/md/UBERON/10/UBERON_0010410.md index 333758fd2d..ae8f9ff31d 100644 --- a/md/UBERON/10/UBERON_0010410.md +++ b/md/UBERON/10/UBERON_0010410.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010410 * *Label* = inguinal fat pad - * *Definition* = encapsulated adipose tissue found in the groin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith] + * *Definition* = encapsulated adipose tissue found in the groin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inguinal part of abdomen](../../UBERON/37/UBERON_0008337.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010510.md b/md/UBERON/10/UBERON_0010510.md index 2e08af0b3d..cfe70196d2 100644 --- a/md/UBERON/10/UBERON_0010510.md +++ b/md/UBERON/10/UBERON_0010510.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010510 * *Label* = strand of auchene hair - * *Definition* = A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000405] + * *Definition* = A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000405 ] ## Synonyms - * auchene hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001893] + * auchene hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001893 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010710.md b/md/UBERON/10/UBERON_0010710.md index 048b6e0de4..ab264e0cea 100644 --- a/md/UBERON/10/UBERON_0010710.md +++ b/md/UBERON/10/UBERON_0010710.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010710 * *Label* = pectoral fin skeleton - * *Definition* = Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * forefin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000943] + * forefin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000943 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0010910.md b/md/UBERON/10/UBERON_0010910.md index 3bb54595c5..bb771ff180 100644 --- a/md/UBERON/10/UBERON_0010910.md +++ b/md/UBERON/10/UBERON_0010910.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010910 * *Label* = opisthotic - * *Definition* = Posterior ossification of the otic capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010835[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] + * *Definition* = Posterior ossification of the otic capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010835, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/braincase/opisthotic.html ] * *Comment* = Taxon notes: teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece[palaeos] - see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011110.md b/md/UBERON/10/UBERON_0011110.md index ace5f0a604..d40db8554c 100644 --- a/md/UBERON/10/UBERON_0011110.md +++ b/md/UBERON/10/UBERON_0011110.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011110 * *Label* = humeroulnar joint - * *Definition* = The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Humeroulnar_joint] + * *Definition* = The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Humeroulnar_joint ] ## Synonyms - * articulatio humeroulnaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * humero-ulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38854] + * articulatio humeroulnaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * humero-ulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38854 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [connects](../../ts/core#connects.md) some [ulna](../../UBERON/24/UBERON_0001424.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011210.md b/md/UBERON/10/UBERON_0011210.md index c281d9560b..2d541c19a7 100644 --- a/md/UBERON/10/UBERON_0011210.md +++ b/md/UBERON/10/UBERON_0011210.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011210 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011310.md b/md/UBERON/10/UBERON_0011310.md index ff2534e827..69649d320c 100644 --- a/md/UBERON/10/UBERON_0011310.md +++ b/md/UBERON/10/UBERON_0011310.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011310 * *Label* = masseteric fossa - * *Definition* = .The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryM.html] + * *Definition* = .The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryM.html ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = fossa on the lateral surface of the mandible, located in the superior part of the ascending process.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011510.md b/md/UBERON/10/UBERON_0011510.md index e8e592e98d..0a2711de25 100644 --- a/md/UBERON/10/UBERON_0011510.md +++ b/md/UBERON/10/UBERON_0011510.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011610.md b/md/UBERON/10/UBERON_0011610.md index 51be3a8149..bb1cecc522 100644 --- a/md/UBERON/10/UBERON_0011610.md +++ b/md/UBERON/10/UBERON_0011610.md @@ -35,8 +35,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps inter-ventral hypohyal joint (TAO:0001846)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps interhyal-epihyal joint (TAO:0001841)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps ventral hypohyal-urohyal joint (TAO:0001848)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011810.md b/md/UBERON/10/UBERON_0011810.md index e0e700a1bd..60a8d9e5e5 100644 --- a/md/UBERON/10/UBERON_0011810.md +++ b/md/UBERON/10/UBERON_0011810.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011810 * *Label* = collection of feathers - * *Definition* = An anatomical cluster that consists of feathers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cluster that consists of feathers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cluster](../../UBERON/77/UBERON_0000477.md) and [has member](../../RO/51/RO_0002351.md) some [feather](../../UBERON/22/UBERON_0000022.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011810 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0011910.md b/md/UBERON/10/UBERON_0011910.md index bbfc1217d0..553c757ac1 100644 --- a/md/UBERON/10/UBERON_0011910.md +++ b/md/UBERON/10/UBERON_0011910.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011910 * *Label* = gastrocnemius externus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011910 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0012110.md b/md/UBERON/10/UBERON_0012110.md index fb2714f354..89e86276c1 100644 --- a/md/UBERON/10/UBERON_0012110.md +++ b/md/UBERON/10/UBERON_0012110.md @@ -6,7 +6,7 @@ ## Synonyms - * processus frontalis (os zygomaticum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52907] + * processus frontalis (os zygomaticum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52907 ] * zygomatic bone - frontal process ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0012310.md b/md/UBERON/10/UBERON_0012310.md index ae39227786..2f0469657b 100644 --- a/md/UBERON/10/UBERON_0012310.md +++ b/md/UBERON/10/UBERON_0012310.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012310 * *Label* = deep lateral cervical lymph node - * *Definition* = The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_lateral_cervical_lymph_nodes] + * *Definition* = The deep lateral cervical lymph nodes are found near the upper part of the internal jugular vein in the neck, lateral or posterior to the carotid sheath. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_lateral_cervical_lymph_nodes ] ## Synonyms - * deep lateral cervical node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12770] + * deep lateral cervical node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12770 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012310 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0013110.md b/md/UBERON/10/UBERON_0013110.md index 3481e651c4..aaaf2d4403 100644 --- a/md/UBERON/10/UBERON_0013110.md +++ b/md/UBERON/10/UBERON_0013110.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013110 * *Label* = hydrophid venom - * *Definition* = Venoms of sea snakes, Hydrophiinae, found around Pacific islands. The venoms contain fewer enzymes and more neuro- or myotoxins than land snakes. The neurotoxic proteins are similar to elapid small, short, or type I neurotoxins, some of which have been characterized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.480] + * *Definition* = Venoms of sea snakes, Hydrophiinae, found around Pacific islands. The venoms contain fewer enzymes and more neuro- or myotoxins than land snakes. The neurotoxic proteins are similar to elapid small, short, or type I neurotoxins, some of which have been characterized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.480 ] ## Synonyms - * hydrophid venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.480] - * sea snake venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.480] + * hydrophid venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.480 ] + * sea snake venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.480 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0013510.md b/md/UBERON/10/UBERON_0013510.md index 3c9aa225a4..0a050c3811 100644 --- a/md/UBERON/10/UBERON_0013510.md +++ b/md/UBERON/10/UBERON_0013510.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0013610.md b/md/UBERON/10/UBERON_0013610.md index e55b3166a8..71ded9c056 100644 --- a/md/UBERON/10/UBERON_0013610.md +++ b/md/UBERON/10/UBERON_0013610.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0013710.md b/md/UBERON/10/UBERON_0013710.md index 8985c43101..debdaa4f6f 100644 --- a/md/UBERON/10/UBERON_0013710.md +++ b/md/UBERON/10/UBERON_0013710.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013710 * *Label* = posterior superior iliac spine - * *Definition* = The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior superior iliac spine serves for the attachment of the oblique portion of the posterior sacroiliac ligaments and the Multifidus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_superior_iliac_spine] + * *Definition* = The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior superior iliac spine serves for the attachment of the oblique portion of the posterior sacroiliac ligaments and the Multifidus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_superior_iliac_spine ] ## Synonyms - * posterior superior iliac spine (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49468] - * posterior superior spine of the ilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_superior_iliac_spine] + * posterior superior iliac spine (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49468 ] + * posterior superior spine of the ilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_superior_iliac_spine ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0014410.md b/md/UBERON/10/UBERON_0014410.md index 627e561881..b80a30152a 100644 --- a/md/UBERON/10/UBERON_0014410.md +++ b/md/UBERON/10/UBERON_0014410.md @@ -30,8 +30,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = variant structure in human - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014410 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0014510.md b/md/UBERON/10/UBERON_0014510.md index 723747b4cb..1ba943bbb7 100644 --- a/md/UBERON/10/UBERON_0014510.md +++ b/md/UBERON/10/UBERON_0014510.md @@ -7,7 +7,7 @@ ## Synonyms - * omasal laminae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * omasal laminae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014510 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0014610.md b/md/UBERON/10/UBERON_0014610.md index 3f014ce8af..ed43364edd 100644 --- a/md/UBERON/10/UBERON_0014610.md +++ b/md/UBERON/10/UBERON_0014610.md @@ -6,15 +6,15 @@ ## Synonyms - * thoracic spinal cord ventral horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1410[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * thoracic spinal cord anterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1410] + * thoracic spinal cord ventral horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1410, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * thoracic spinal cord anterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1410 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1410 * SCTID:367876000 - * UMLS:C0228632 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1410] - * UMLS:C1288552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1410] + * UMLS:C0228632 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1410 ] + * UMLS:C1288552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1410 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [ventral horn of spinal cord](../../UBERON/57/UBERON_0002257.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014610 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0014710.md b/md/UBERON/10/UBERON_0014710.md index 7d9761a97b..fff73cef05 100644 --- a/md/UBERON/10/UBERON_0014710.md +++ b/md/UBERON/10/UBERON_0014710.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014710 * *Label* = carapacial ridge - * *Definition* = A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://embryo.asu.edu/pages/development-turtle-carapace-1989-ann-campbell-burke] + * *Definition* = A longitidunial ridge on the lateral aspect of the flank that appears in the late pharyngula stage of chelonians. It forms the leading edge of the laterally expanding carapacial primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://embryo.asu.edu/pages/development-turtle-carapace-1989-ann-campbell-burke ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014710 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0015010.md b/md/UBERON/10/UBERON_0015010.md index 099a845c51..3cc50a6d8b 100644 --- a/md/UBERON/10/UBERON_0015010.md +++ b/md/UBERON/10/UBERON_0015010.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015010 * *Label* = sacral vertebra endochondral element - * *Definition* = A sacral vertebra bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A sacral vertebra bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * sacral vertebra element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * sacral vertebra skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * sacral vertebra element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * sacral vertebra skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sacral vertebra cartilage element](../../UBERON/45/UBERON_0010745.md)or[sacral vertebra pre-cartilage condensation](../../UBERON/44/UBERON_0010744.md)or[sacral vertebra](../../UBERON/94/UBERON_0001094.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_0015110.md b/md/UBERON/10/UBERON_0015110.md index 4d03f3a316..4683dde163 100644 --- a/md/UBERON/10/UBERON_0015110.md +++ b/md/UBERON/10/UBERON_0015110.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone 3 endochondral element](../../UBERON/08/UBERON_0015108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015110 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_1000010.md b/md/UBERON/10/UBERON_1000010.md index d7587fe8e7..bb759a9c58 100644 --- a/md/UBERON/10/UBERON_1000010.md +++ b/md/UBERON/10/UBERON_1000010.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000010 * *Label* = mole - * *Definition* = A benign tumor on the skin, usually with darker pigment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Melanocytic_nevus] + * *Definition* = A benign tumor on the skin, usually with darker pigment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Melanocytic_nevus ] ## Synonyms - * naevus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005043] - * nevus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005043] + * naevus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005043 ] + * nevus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005043 ] * melanocytic nevus ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An ectopic melanophore accumulation analogous to a nevi (mole) in humans.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000010 + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_1500010.md b/md/UBERON/10/UBERON_1500010.md index adf7bdaa80..c460a82d9f 100644 --- a/md/UBERON/10/UBERON_1500010.md +++ b/md/UBERON/10/UBERON_1500010.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_1600010.md b/md/UBERON/10/UBERON_1600010.md index 6858db8dbf..8d3e32a355 100644 --- a/md/UBERON/10/UBERON_1600010.md +++ b/md/UBERON/10/UBERON_1600010.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000210.md b/md/UBERON/10/UBERON_2000210.md index 73b07314c1..222100323d 100644 --- a/md/UBERON/10/UBERON_2000210.md +++ b/md/UBERON/10/UBERON_2000210.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000410.md b/md/UBERON/10/UBERON_2000410.md index 17f731cecc..869e03314c 100644 --- a/md/UBERON/10/UBERON_2000410.md +++ b/md/UBERON/10/UBERON_2000410.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000410 * *Label* = postcleithrum - * *Definition* = Dermal bone placed postero-medially to the supracleithrum and/or cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone placed postero-medially to the supracleithrum and/or cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Commonly, the postcleithra form a bilateral series including one to three flat, thin postcleithra of variable shapes (in teleosts). Basal teleosts may have a series up to seven postcleithra (see Arratia 1984 and 1997 and references herein). ## Synonyms - * m?tacleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000131] - * m?taclithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000131] - * paraclithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000143] - * postclavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000410] - * postcleithra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000410[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * postcleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * m?tacleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000131 ] + * m?taclithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000131 ] + * paraclithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000143 ] + * postclavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000410 ] + * postcleithra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000410, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * postcleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000510.md b/md/UBERON/10/UBERON_2000510.md index bc81620a80..46b1787466 100644 --- a/md/UBERON/10/UBERON_2000510.md +++ b/md/UBERON/10/UBERON_2000510.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000610.md b/md/UBERON/10/UBERON_2000610.md index 0cf52de90c..a5bb53580a 100644 --- a/md/UBERON/10/UBERON_2000610.md +++ b/md/UBERON/10/UBERON_2000610.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000610 * *Label* = vertical myoseptum - * *Definition* = Connective tissue partitions developing between the myotomes. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Connective tissue partitions developing between the myotomes. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * transverse myoseptum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000610] + * transverse myoseptum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000610 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000710.md b/md/UBERON/10/UBERON_2000710.md index ec6e4f7967..93a1390310 100644 --- a/md/UBERON/10/UBERON_2000710.md +++ b/md/UBERON/10/UBERON_2000710.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000810.md b/md/UBERON/10/UBERON_2000810.md index e9f82a9ad5..aeb9452be8 100644 --- a/md/UBERON/10/UBERON_2000810.md +++ b/md/UBERON/10/UBERON_2000810.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000810 * *Label* = myotome somite 7 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2000910.md b/md/UBERON/10/UBERON_2000910.md index cccd24c25f..f3582e6d4d 100644 --- a/md/UBERON/10/UBERON_2000910.md +++ b/md/UBERON/10/UBERON_2000910.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2001010.md b/md/UBERON/10/UBERON_2001010.md index bc82bd2943..50023f0dce 100644 --- a/md/UBERON/10/UBERON_2001010.md +++ b/md/UBERON/10/UBERON_2001010.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001010[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001010, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_2001610.md b/md/UBERON/10/UBERON_2001610.md index d382a50a1a..9974b85508 100644 --- a/md/UBERON/10/UBERON_2001610.md +++ b/md/UBERON/10/UBERON_2001610.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001610 * *Label* = quadrate dorsal process - * *Definition* = An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. ## Synonyms - * quadrate superior arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001610] + * quadrate superior arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001610 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2001710.md b/md/UBERON/10/UBERON_2001710.md index 20f258ee1b..4fe6c99003 100644 --- a/md/UBERON/10/UBERON_2001710.md +++ b/md/UBERON/10/UBERON_2001710.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001710 * *Label* = opercle-interopercle joint - * *Definition* = Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [interopercle](../../UBERON/74/UBERON_2000674.md) and [core#connects](../../ts/core#connects.md) some [opercle](../../UBERON/50/UBERON_2000250.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2001810.md b/md/UBERON/10/UBERON_2001810.md index e86dc5f0f0..ea240a9b53 100644 --- a/md/UBERON/10/UBERON_2001810.md +++ b/md/UBERON/10/UBERON_2001810.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001810 * *Label* = supraorbital sensory canal - * *Definition* = Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with otic and infraorbital sensory canals. ## Synonyms - * supraorbital canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001810] + * supraorbital canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001810 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2001910.md b/md/UBERON/10/UBERON_2001910.md index 85b7f71e3d..fa45402005 100644 --- a/md/UBERON/10/UBERON_2001910.md +++ b/md/UBERON/10/UBERON_2001910.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001910 * *Label* = pharyngobranchial 1 element - * *Definition* = Most anterior pharyngobranchial element, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Most anterior pharyngobranchial element, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2002010.md b/md/UBERON/10/UBERON_2002010.md index d09f8b2570..57e829a2fe 100644 --- a/md/UBERON/10/UBERON_2002010.md +++ b/md/UBERON/10/UBERON_2002010.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002010 * *Label* = hyoideomandibular nerve - * *Definition* = Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2002110.md b/md/UBERON/10/UBERON_2002110.md index 052eae04de..2952b077a6 100644 --- a/md/UBERON/10/UBERON_2002110.md +++ b/md/UBERON/10/UBERON_2002110.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2002210.md b/md/UBERON/10/UBERON_2002210.md index 0f476e874f..0c297cb911 100644 --- a/md/UBERON/10/UBERON_2002210.md +++ b/md/UBERON/10/UBERON_2002210.md @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2005010.md b/md/UBERON/10/UBERON_2005010.md index ab98030de4..817573e390 100644 --- a/md/UBERON/10/UBERON_2005010.md +++ b/md/UBERON/10/UBERON_2005010.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005010 * *Label* = mid cerebral vein - * *Definition* = The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * MCeV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005010] - * mid-cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005010] - * middle cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005010] + * MCeV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005010 ] + * mid-cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005010 ] + * middle cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005010 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2005210.md b/md/UBERON/10/UBERON_2005210.md index fbfe5e1756..bf1ed4d5b5 100644 --- a/md/UBERON/10/UBERON_2005210.md +++ b/md/UBERON/10/UBERON_2005210.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005210 * *Label* = obsolete midbrain interneuron - * *Definition* = CNS interneurons located in the midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:Curator] + * *Definition* = CNS interneurons located in the midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:Curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_2005410.md b/md/UBERON/10/UBERON_2005410.md index 8dd938540c..221f992b71 100644 --- a/md/UBERON/10/UBERON_2005410.md +++ b/md/UBERON/10/UBERON_2005410.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005410 * *Label* = pars inferior ear - * *Definition* = The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_2007010.md b/md/UBERON/10/UBERON_2007010.md index 3c374694cc..c5e17766a9 100644 --- a/md/UBERON/10/UBERON_2007010.md +++ b/md/UBERON/10/UBERON_2007010.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007010 * *Label* = obsolete eminentia thalami - * *Definition* = Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_3000110.md b/md/UBERON/10/UBERON_3000110.md index 0e0e3bd696..c5e167c3b6 100644 --- a/md/UBERON/10/UBERON_3000110.md +++ b/md/UBERON/10/UBERON_3000110.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000110 * *Label* = crista contacta - * *Definition* = Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_3000610.md b/md/UBERON/10/UBERON_3000610.md index ca356f0512..444dd72a91 100644 --- a/md/UBERON/10/UBERON_3000610.md +++ b/md/UBERON/10/UBERON_3000610.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_3000810.md b/md/UBERON/10/UBERON_3000810.md index a95ed4451f..ea48a32e65 100644 --- a/md/UBERON/10/UBERON_3000810.md +++ b/md/UBERON/10/UBERON_3000810.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000810 * *Label* = fissura sagittalis - * *Definition* = Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Maglia_et_al_2007] + * *Definition* = Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Maglia_et_al_2007 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_3000910.md b/md/UBERON/10/UBERON_3000910.md index 6774ad5723..ce7b7b3983 100644 --- a/md/UBERON/10/UBERON_3000910.md +++ b/md/UBERON/10/UBERON_3000910.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_3001010.md b/md/UBERON/10/UBERON_3001010.md index fc10fb52df..5fbd6d27fb 100644 --- a/md/UBERON/10/UBERON_3001010.md +++ b/md/UBERON/10/UBERON_3001010.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_3010010.md b/md/UBERON/10/UBERON_3010010.md index eb566d0a04..9a9bfcee40 100644 --- a/md/UBERON/10/UBERON_3010010.md +++ b/md/UBERON/10/UBERON_3010010.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_3010310.md b/md/UBERON/10/UBERON_3010310.md index d485a82e03..1f3e67f916 100644 --- a/md/UBERON/10/UBERON_3010310.md +++ b/md/UBERON/10/UBERON_3010310.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010310 * *Label* = obsolete natural killer cell - * *Definition* = A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * NK cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010310] + * NK cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010310 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000623 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_3010710.md b/md/UBERON/10/UBERON_3010710.md index 3b4ac4e6de..216ff320a8 100644 --- a/md/UBERON/10/UBERON_3010710.md +++ b/md/UBERON/10/UBERON_3010710.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010710 * *Label* = m. interscapularis - * *Definition* = Muscle which originates from the ventro-medial surface of the suprascapula and inserts on the ventral surface of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the ventro-medial surface of the suprascapula and inserts on the ventral surface of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_4000010.md b/md/UBERON/10/UBERON_4000010.md index fb05e22bff..b0cfd715c8 100644 --- a/md/UBERON/10/UBERON_4000010.md +++ b/md/UBERON/10/UBERON_4000010.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007006 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/10/UBERON_4100010.md b/md/UBERON/10/UBERON_4100010.md index e6dab9bddd..321e8d7e11 100644 --- a/md/UBERON/10/UBERON_4100010.md +++ b/md/UBERON/10/UBERON_4100010.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_4200010.md b/md/UBERON/10/UBERON_4200010.md index 3128dea8bc..ec0600817f 100644 --- a/md/UBERON/10/UBERON_4200010.md +++ b/md/UBERON/10/UBERON_4200010.md @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_4200110.md b/md/UBERON/10/UBERON_4200110.md index 43ca284a52..7ad1928d95 100644 --- a/md/UBERON/10/UBERON_4200110.md +++ b/md/UBERON/10/UBERON_4200110.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/10/UBERON_4440010.md b/md/UBERON/10/UBERON_4440010.md index 31bb55081e..2bf8b23e87 100644 --- a/md/UBERON/10/UBERON_4440010.md +++ b/md/UBERON/10/UBERON_4440010.md @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fin radial skeleton](../../UBERON/08/UBERON_4440008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000011.md b/md/UBERON/11/UBERON_0000011.md index bbd8169c6c..00fc9cfae4 100644 --- a/md/UBERON/11/UBERON_0000011.md +++ b/md/UBERON/11/UBERON_0000011.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000011 * *Label* = parasympathetic nervous system - * *Definition* = The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parasympathetic_nervous_system] + * *Definition* = The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parasympathetic_nervous_system ] * *Comment* = Development notes: has developmental contribution from NC in verteberates (UBERONREF:0000002) ## Synonyms * PNS - parasympathetic * parasympathetic part of autonomic division of nervous system - * pars parasympathica divisionis autonomici systematis nervosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9907[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars parasympathica divisionis autonomici systematis nervosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parasympathetic_nervous_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars parasympathica divisionis autonomici systematis nervosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9907, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars parasympathica divisionis autonomici systematis nervosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parasympathetic_nervous_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,9 +32,9 @@ * NIF_GrossAnatomy:birnlex_2517 * SCTID:362496006 * TAO:0001575 - * UMLS:C0030510 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2517] - * UMLS:C0030510 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parasympathetic_Nervous_System] - * UMLS:C1305770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2517] + * UMLS:C0030510 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2517 ] + * UMLS:C0030510 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parasympathetic_Nervous_System ] + * UMLS:C1305770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2517 ] * VHOG:0000755 * Wikipedia:Parasympathetic_nervous_system * ZFA:0001575 @@ -64,8 +64,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the autonomic nervous system which has opposing physiological effects of the sympathetic nervous system. Examples include decreasing the heart rate or dilating the blood vessels.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals, the autonomic nervous system is divided into two contrasting, antagonistic systems of control over visceral activity: the sympathetic system and the parasympathetic system (reference 1); In general, the teleosts may be considered phylogenetically the first class of vertebrates in which the heart is regulated by both sympathetic and parasympathetic neural pathways (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000111.md b/md/UBERON/11/UBERON_0000111.md index 909f74684f..1ef72c182b 100644 --- a/md/UBERON/11/UBERON_0000111.md +++ b/md/UBERON/11/UBERON_0000111.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000111 * *Label* = organogenesis stage - * *Definition* = A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organogenesis] + * *Definition* = A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organogenesis ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000211.md b/md/UBERON/11/UBERON_0000211.md index e85ae123d6..8808138737 100644 --- a/md/UBERON/11/UBERON_0000211.md +++ b/md/UBERON/11/UBERON_0000211.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000211 * *Label* = ligament - * *Definition* = Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000073[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000073, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament ## Synonyms - * ligament organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21496] + * ligament organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21496 ] ## Cross-references @@ -20,7 +20,7 @@ * OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA * SCTID:182358004 * TAO:0001682 - * UMLS:C0023685 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ligament] + * UMLS:C0023685 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ligament ] * VHOG:0001272 * VSAO:0000072 * Wikipedia:Ligament @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of connective tissue that connects bone or cartilage.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Compared with their Ediacarian predecessor, Cambrian animals in general were characterized by their much stouter bodies. The stoutness of the body is likely due to the formation of ligaments and tendons, which in turn requires the crosslinking of collagen triple helices.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000311.md b/md/UBERON/11/UBERON_0000311.md index fbdc1ed77c..42b353b9d8 100644 --- a/md/UBERON/11/UBERON_0000311.md +++ b/md/UBERON/11/UBERON_0000311.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000311 * *Label* = extensor muscle - * *Definition* = A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.britannica.com/EBchecked/topic/198909/extensor-muscle] + * *Definition* = A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.britannica.com/EBchecked/topic/198909/extensor-muscle ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000411.md b/md/UBERON/11/UBERON_0000411.md index e08da78f55..6ad6ff3cbf 100644 --- a/md/UBERON/11/UBERON_0000411.md +++ b/md/UBERON/11/UBERON_0000411.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000411 * *Label* = visual cortex - * *Definition* = Area of the occipital lobe concerned with vision. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.730.885.213.571.735] + * *Definition* = Area of the occipital lobe concerned with vision. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.730.885.213.571.735 ] * *Comment* = Editor note: merge with primary visual cortex? FMA and BTO treat as distinct ## Synonyms - * V1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] - * striate cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.730.885.213.571.735] - * visual areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VIS] + * V1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] + * striate cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.730.885.213.571.735 ] + * visual areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VIS ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000711.md b/md/UBERON/11/UBERON_0000711.md index 050e5228b8..998314f7e6 100644 --- a/md/UBERON/11/UBERON_0000711.md +++ b/md/UBERON/11/UBERON_0000711.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000711 * *Label* = splenius capitis - * *Definition* = The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuch, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebr. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_capitis_muscle] + * *Definition* = The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuch, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebr. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_capitis_muscle ] ## Synonyms - * splenius capitis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_capitis_muscle] - * musculus splenius capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_capitis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * splenius capitis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_capitis_muscle ] + * musculus splenius capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_capitis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0000911.md b/md/UBERON/11/UBERON_0000911.md index 857e32617a..dfba8f10b1 100644 --- a/md/UBERON/11/UBERON_0000911.md +++ b/md/UBERON/11/UBERON_0000911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000911 * *Label* = chyle - * *Definition* = Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chyle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://wordnet.princeton.edu/perl/webwn?s=chyle] + * *Definition* = Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chyle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://wordnet.princeton.edu/perl/webwn?s=chyle ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:61403 * GAID:1187 * MESH:A12.207.630.350 - * UMLS:C0008730 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chyle] + * UMLS:C0008730 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chyle ] * Wikipedia:Chyle * ncithesaurus:Chyle @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001011.md b/md/UBERON/11/UBERON_0001011.md index 5e246ac48a..ff089cfa4e 100644 --- a/md/UBERON/11/UBERON_0001011.md +++ b/md/UBERON/11/UBERON_0001011.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001011 * *Label* = hemolymph - * *Definition* = Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemolymph] + * *Definition* = Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemolymph ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001111.md b/md/UBERON/11/UBERON_0001111.md index 51c527a4a8..20ce99c993 100644 --- a/md/UBERON/11/UBERON_0001111.md +++ b/md/UBERON/11/UBERON_0001111.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001111 * *Label* = intercostal muscle - * *Definition* = Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_muscle] + * *Definition* = Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -25,7 +25,7 @@ * MESH:A02.633.567.900.500 * OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA * SCTID:181746004 - * UMLS:C0021724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intercostal_Muscle] + * UMLS:C0021724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intercostal_Muscle ] * VHOG:0000903 * Wikipedia:Intercostal_muscle * http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001211.md b/md/UBERON/11/UBERON_0001211.md index 87c21a3835..e604c73535 100644 --- a/md/UBERON/11/UBERON_0001211.md +++ b/md/UBERON/11/UBERON_0001211.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001211 * *Label* = Peyer's patch - * *Definition* = aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peyer's_patch] + * *Definition* = aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peyer's_patch ] * *Comment* = AO notes: FMA has [set of?] [aggregated,small] lymphoid [follice,nodule] of [colon, SI, I, etc] - Pp is a syn for Aggregated lymphoid follicle of small intestine; but MA uses Pp as covering both SI and LI. MA also includes follicle as a part. WP says duodenum and jejunum lack PPs. Taxon notes: Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas). ## Synonyms - * noduli lymphoidei aggregati intestini tenuis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76466[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * noduli lymphoidei aggregati intestini tenuis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76466, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * aggregated lymphoid follicle of intestine * aggregated lymphoid nodule @@ -21,7 +21,7 @@ * GAID:950 * MA:0000137 * MESH:A10.549.598 - * UMLS:C0031272 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peyer_s_Patch] + * UMLS:C0031272 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peyer_s_Patch ] * Wikipedia:Peyer's_patch * ncithesaurus:Mouse_Peyer_s_Patches * ncithesaurus:Peyer_s_Patch @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001311.md b/md/UBERON/11/UBERON_0001311.md index 1b2700925f..616105207d 100644 --- a/md/UBERON/11/UBERON_0001311.md +++ b/md/UBERON/11/UBERON_0001311.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001311 * *Label* = inferior vesical artery - * *Definition* = The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vesical_artery] + * *Definition* = The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vesical_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria vesicali inferior [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria vesicalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vesical_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria vesicali inferior [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria vesicalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vesical_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18823 * MA:0002079 * SCTID:43210002 - * UMLS:C0226377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Vesical_Artery] + * UMLS:C0226377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Vesical_Artery ] * Wikipedia:Inferior_vesical_artery * http://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png * ncithesaurus:Inferior_Vesical_Artery @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001411.md b/md/UBERON/11/UBERON_0001411.md index 35f13799fd..053fbe5869 100644 --- a/md/UBERON/11/UBERON_0001411.md +++ b/md/UBERON/11/UBERON_0001411.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001411 * *Label* = basilic vein - * *Definition* = In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of manus and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilic_vein] + * *Definition* = In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of manus and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * basilic vein of forearm - * vena basilica antebrachii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22908[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena basilica antebrachii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22908, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002086 * OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA * SCTID:181393008 - * UMLS:C0226801 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basilic_Vein] + * UMLS:C0226801 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basilic_Vein ] * Wikipedia:Basilic_vein * galen:BasilicVein * http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001511.md b/md/UBERON/11/UBERON_0001511.md index f3db4eb2e2..48e9e4fce0 100644 --- a/md/UBERON/11/UBERON_0001511.md +++ b/md/UBERON/11/UBERON_0001511.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001511 * *Label* = skin of leg - * *Definition* = A zone of skin that is part of a leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * leg skin - * leg zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * leg zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:18159 * FMA:37828 * MA:0000674 - * UMLS:C0222279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Leg_Skin] + * UMLS:C0222279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Leg_Skin ] * ncithesaurus:Leg_Skin ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001611.md b/md/UBERON/11/UBERON_0001611.md index 975b0842de..81a97a2490 100644 --- a/md/UBERON/11/UBERON_0001611.md +++ b/md/UBERON/11/UBERON_0001611.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001611 * *Label* = sublingual artery - * *Definition* = The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_artery] + * *Definition* = The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * sublingual branch of lingual artery - * arteria sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:49543 * MA:0002049 * SCTID:368706006 - * UMLS:C0226106 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sublingual_Artery] + * UMLS:C0226106 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sublingual_Artery ] * Wikipedia:Sublingual_artery * http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray559.png/200px-Gray559.png @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of external carotid (AAO:0010218)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001711.md b/md/UBERON/11/UBERON_0001711.md index ed260078fb..84ea67ca49 100644 --- a/md/UBERON/11/UBERON_0001711.md +++ b/md/UBERON/11/UBERON_0001711.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001711 * *Label* = eyelid - * *Definition* = An eyelid is a thin fold of skin that covers and protects an eyeball. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyelid] + * *Definition* = An eyelid is a thin fold of skin that covers and protects an eyeball. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyelid ] * *Comment* = Each eyelid consists of the following layers, starting anteriorly: (1) skin, (2) a layer of subcutaneous connective tissue, (3) a layer of striated muscle fibres of the orbicularis muscle, (4) a layer of submuscular connective tissue, (5) a fibrous layer, including the tarsal plates, (6) a layer of smooth muscle, (7) the palpebral conjunctiva. AO notes: FMA divides this into skin, fascia, conjunctiva. Consider adding 'eye surface', like MA ## Synonyms * blepharon * palpebra - * blephara [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * palpebrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * blephara [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * palpebrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A01.456.505.420.504 * OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA * SCTID:265782007 - * UMLS:C0015426 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelid] + * UMLS:C0015426 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelid ] * VHOG:0000016 * Wikipedia:Eyelid * http://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg @@ -56,8 +56,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = palpebral * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_75178 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001811.md b/md/UBERON/11/UBERON_0001811.md index 7298fa13d0..29c7630b33 100644 --- a/md/UBERON/11/UBERON_0001811.md +++ b/md/UBERON/11/UBERON_0001811.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001811 * *Label* = conjunctiva - * *Definition* = The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conjunctiva] + * *Definition* = The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conjunctiva ] ## Synonyms @@ -21,7 +21,7 @@ * MA:0000265 * MESH:A09.371.192 * SCTID:181161008 - * UMLS:C0009758 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Conjunctiva] + * UMLS:C0009758 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Conjunctiva ] * Wikipedia:Conjunctiva * XAO:0000182 * http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png @@ -51,8 +51,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = conjunctival - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0001911.md b/md/UBERON/11/UBERON_0001911.md index 95c6111c49..f40a00d92d 100644 --- a/md/UBERON/11/UBERON_0001911.md +++ b/md/UBERON/11/UBERON_0001911.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001911 * *Label* = mammary gland - * *Definition* = The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000817[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammary_gland] + * *Definition* = The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000817, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammary_gland ] * *Comment* = Note that this class corresponds to the generic mammary gland. The human mammary gland is in the thoracic/breast region and is therefore covered by the subclass "thoracic mammary gland" // Males typically only have rudimentary mammary glands, The male Dayak fruit bat has lactating mammary glands. Male lactation occurs infrequently in some species. We make a part_of association to female organism for now as this is the canonical case // AO notes: in MP, this is implicitly part of female reproductive system, but not female genitalia // A mouse mammary gland contains a single duct or sinus, forming 5-10 secondary ducts ## Synonyms - * glandula mammaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57983[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62088] + * glandula mammaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57983, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62088 ] * lobe of breast * lobe of mammary gland - * Brustdruese [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000817] - * dug [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammary_gland] - * glandula mammaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammary_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mamma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000817] - * mammae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * Brustdruese [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000817 ] + * dug [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammary_gland ] + * glandula mammaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammary_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mamma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000817 ] + * mammae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,7 +31,7 @@ * MIAA:0000073 * OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA * SCTID:361720005 - * UMLS:C0929301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mammary_Gland] + * UMLS:C0929301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mammary_Gland ] * VHOG:0000398 * Wikipedia:Mammary_gland * http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg @@ -57,7 +57,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [produces](../../RO/00/RO_0003000.md) some [milk](../../UBERON/13/UBERON_0001913.md) ## Other Logical Axioms @@ -68,8 +68,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mammary * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002011.md b/md/UBERON/11/UBERON_0002011.md index cd2a90be0f..84ec38baba 100644 --- a/md/UBERON/11/UBERON_0002011.md +++ b/md/UBERON/11/UBERON_0002011.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002011 * *Label* = thoracodorsal artery - * *Definition* = The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracodorsal_artery] + * *Definition* = The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracodorsal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria thoracodorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracodorsal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria thoracodorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracodorsal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:66320 * MA:0002065 - * UMLS:C0933449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracodorsal_Artery] + * UMLS:C0933449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracodorsal_Artery ] * Wikipedia:Thoracodorsal_artery * http://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002111.md b/md/UBERON/11/UBERON_0002111.md index 7feaae5f8a..1390538b6d 100644 --- a/md/UBERON/11/UBERON_0002111.md +++ b/md/UBERON/11/UBERON_0002111.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002111 * *Label* = artery smooth muscle tissue - * *Definition* = A portion of smooth muscle tissue that is part of an artery [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of an artery [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arterial smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000087] + * arterial smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000087 ] * artery smooth muscle * artery smooth muscle tissue - * smooth muscle of artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72024] - * arterial smooth muscle cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000087] + * smooth muscle of artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72024 ] + * arterial smooth muscle cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000087 ] ## Cross-references @@ -20,7 +20,7 @@ * CALOHA:TS-1198 * FMA:72024 * MA:0000708 - * UMLS:C1706851 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Artery_Smooth_Muscle_Tissue] + * UMLS:C1706851 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Artery_Smooth_Muscle_Tissue ] * ncithesaurus:Artery_Smooth_Muscle_Tissue ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002211.md b/md/UBERON/11/UBERON_0002211.md index 7c786704a1..b5cc8b1662 100644 --- a/md/UBERON/11/UBERON_0002211.md +++ b/md/UBERON/11/UBERON_0002211.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002211 * *Label* = nerve root - * *Definition* = The initial segment of a nerve leaving the central nervous system (Wikipedia). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Nerve_root] + * *Definition* = The initial segment of a nerve leaving the central nervous system (Wikipedia). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Nerve_root ] * *Comment* = Note that this ontology enforces strict part-disjointness between the CNS and PNS which poses challenges for modeling roots of nerves in a way that is consistent with other ontologies. Sometimes the root may be modeled as being entirely part of the brain or spinal cord, in other cases, part of the (peripheral) nerve. We make nerve root continuous_with nerve to avoid inconsistencies. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper ## Synonyms @@ -15,7 +15,7 @@ * FMA:5981 * NIF_GrossAnatomy:nlx_144250 * SCTID:362295007 - * UMLS:C0228084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nerve_Root] + * UMLS:C0228084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nerve_Root ] * Wikipedia:Nerve_root * ncithesaurus:Nerve_Root @@ -26,7 +26,7 @@ ## Superclasses * [neuron projection bundle](../../UBERON/22/UBERON_0000122.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [central nervous system](../../UBERON/17/UBERON_0001017.md) * [continuous_with](../../FMA/72/FMA_85972.md) some [nerve](../../UBERON/21/UBERON_0001021.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002311.md b/md/UBERON/11/UBERON_0002311.md index 544a17144d..7920bfdb56 100644 --- a/md/UBERON/11/UBERON_0002311.md +++ b/md/UBERON/11/UBERON_0002311.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0004083 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002311 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_0002411.md b/md/UBERON/11/UBERON_0002411.md index 4cf378c01f..13c9407fa2 100644 --- a/md/UBERON/11/UBERON_0002411.md +++ b/md/UBERON/11/UBERON_0002411.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002411 * *Label* = clitoris - * *Definition* = The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoris] + * *Definition* = The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoris ] ## Synonyms @@ -20,7 +20,7 @@ * MESH:A05.360.319.887.436 * OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA * SCTID:181442003 - * UMLS:C0008984 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Clitoris] + * UMLS:C0008984 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Clitoris ] * VHOG:0000700 * Wikipedia:Clitoris * galen:Clitoris @@ -52,8 +52,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = clitoral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002511.md b/md/UBERON/11/UBERON_0002511.md index 27006af60b..9272748fb3 100644 --- a/md/UBERON/11/UBERON_0002511.md +++ b/md/UBERON/11/UBERON_0002511.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002511 * *Label* = trabecula carnea - * *Definition* = The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chord tendine which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabeculae_carneae] + * *Definition* = The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chord tendine which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabeculae_carneae ] * *Comment* = Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea. ## Synonyms - * ventricle trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002831] - * cardiac trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060347] - * columnae carneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabeculae_carneae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * heart trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060347] + * ventricle trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002831 ] + * cardiac trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060347 ] + * columnae carneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabeculae_carneae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * heart trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060347 ] * trabecula of heart - * trabeculae carneae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * trabeculae carneae cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabeculae_carneae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventricular trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002831] + * trabeculae carneae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * trabeculae carneae cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabeculae_carneae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventricular trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002831 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002611.md b/md/UBERON/11/UBERON_0002611.md index 93ae08a09f..d1862edf8d 100644 --- a/md/UBERON/11/UBERON_0002611.md +++ b/md/UBERON/11/UBERON_0002611.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002611 * *Label* = obsolete node of ranvier - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Node_of_ranvier] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Node_of_ranvier ] * *Comment* = in GO ## Synonyms - * ranvier node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67368] - * ranvier's node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67368] + * ranvier node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67368 ] + * ranvier's node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67368 ] ## Cross-references @@ -35,9 +35,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = GO:0033268 * *[consider](../../er/oboInOwl#consider.md)* = NIF_GrossAnatomy:birnlex_1152 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Node_of_Ranvier - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002611 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_0002711.md b/md/UBERON/11/UBERON_0002711.md index 28d09938b2..2ed282e0df 100644 --- a/md/UBERON/11/UBERON_0002711.md +++ b/md/UBERON/11/UBERON_0002711.md @@ -6,12 +6,12 @@ ## Synonyms - * posterior commissure nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68463] - * PCom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1470[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus commissura posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:511[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus commissuralis posterioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:511[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interstitialis of posterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:511[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the posterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:511] + * posterior commissure nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68463 ] + * PCom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1470, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus commissura posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:511, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus commissuralis posterioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:511, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interstitialis of posterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:511, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the posterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:511 ] ## Cross-references @@ -22,8 +22,8 @@ * BM:NPC * FMA:68463 * NIF_GrossAnatomy:birnlex_1470 - * NeuroNames:511 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1470] - * UMLS:C0175386 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1470] + * NeuroNames:511 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1470 ] + * UMLS:C0175386 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1470 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002811.md b/md/UBERON/11/UBERON_0002811.md index 8300e8350d..15a7efa44f 100644 --- a/md/UBERON/11/UBERON_0002811.md +++ b/md/UBERON/11/UBERON_0002811.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002811 * *Label* = left frontal lobe - * *Definition* = A frontal cortex that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A frontal cortex that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:72970 * NIF_GrossAnatomy:birnlex_1787 * SCTID:314142003 - * UMLS:C1281955 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1787] + * UMLS:C1281955 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1787 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [frontal cortex](../../UBERON/70/UBERON_0001870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0002911.md b/md/UBERON/11/UBERON_0002911.md index 250c6538e5..0d0cb1f293 100644 --- a/md/UBERON/11/UBERON_0002911.md +++ b/md/UBERON/11/UBERON_0002911.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002911 * *Label* = parietal operculum - * *Definition* = The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_operculum] + * *Definition* = The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_operculum ] ## Synonyms - * operculum parietale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4029[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pao [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4029[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * operculum parietale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4029, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pao [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4029, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -16,10 +16,10 @@ * BAMS:pao * FMA:74889 * NIF_GrossAnatomy:birnlex_4029 - * NeuroNames:96 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4029] + * NeuroNames:96 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4029 ] * SCTID:362353000 - * UMLS:C0228265 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4029] - * UMLS:C1284612 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4029] + * UMLS:C0228265 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4029 ] + * UMLS:C1284612 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4029 ] * Wikipedia:Parietal_operculum * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Operculum.png/200px-Operculum.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003011.md b/md/UBERON/11/UBERON_0003011.md index a6590e51f9..fcba61573a 100644 --- a/md/UBERON/11/UBERON_0003011.md +++ b/md/UBERON/11/UBERON_0003011.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003011 * *Label* = facial motor nucleus - * *Definition* = The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_motor_nucleus] + * *Definition* = The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_motor_nucleus ] * *Comment* = see comments for facial nucleus. also check ZFA/pons ## Synonyms - * branchiomotor nucleus of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54582] - * facial motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54582] - * facial nerve motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000206] - * motor nucleus VII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000206] - * motor nucleus of VII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54582] - * motor nucleus of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54582] - * nVII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000206] - * nucleus motorius nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000206] - * facial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_nucleus] - * n. nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_motor_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:586[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:586[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * branchiomotor nucleus of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54582 ] + * facial motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54582 ] + * facial nerve motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000206 ] + * motor nucleus VII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000206 ] + * motor nucleus of VII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54582 ] + * motor nucleus of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54582 ] + * nVII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000206 ] + * nucleus motorius nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000206 ] + * facial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_nucleus ] + * n. nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_motor_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:586, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:586, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * BAMS:VII * FMA:54582 * NIF_GrossAnatomy:birnlex_903 - * NeuroNames:586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_903] + * NeuroNames:586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_903 ] * TAO:0000206 - * UMLS:C0175442 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_903] + * UMLS:C0175442 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_903 ] * Wikipedia:Facial_motor_nucleus * ZFA:0000206 * http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003111.md b/md/UBERON/11/UBERON_0003111.md index a69b5da985..37d04ae2e8 100644 --- a/md/UBERON/11/UBERON_0003111.md +++ b/md/UBERON/11/UBERON_0003111.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003111 * *Label* = sphenoid region - * *Definition* = Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000290[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000007] + * *Definition* = Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000290, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000007 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that forms the floor and sidewalls of the middle part of the neurocranium.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003211.md b/md/UBERON/11/UBERON_0003211.md index 493ff8539c..73a86657f2 100644 --- a/md/UBERON/11/UBERON_0003211.md +++ b/md/UBERON/11/UBERON_0003211.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003211 * *Label* = median ocellus - * *Definition* = The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HAO:0000526[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ocellus#Ocelli] + * *Definition* = The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HAO:0000526, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ocellus#Ocelli ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003311.md b/md/UBERON/11/UBERON_0003311.md index b7ccc33842..4d76471a21 100644 --- a/md/UBERON/11/UBERON_0003311.md +++ b/md/UBERON/11/UBERON_0003311.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003311 * *Label* = floor plate of medulla oblongata - * *Definition* = A floor plate that is part of a medulla oblongata [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A floor plate that is part of a medulla oblongata [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bulb floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bulb floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000786] - * floor plate of bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate of medulla oblonmgata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floor plate of metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of medulla oblonmgata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate of metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblongata floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblongata floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblonmgata floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblonmgata floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metepencephalon floor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metepencephalon floorplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * floorplate medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000786] + * bulb floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bulb floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000786 ] + * floor plate of bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate of medulla oblonmgata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floor plate of metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of medulla oblonmgata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate of metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblongata floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblongata floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblonmgata floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblonmgata floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metepencephalon floor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metepencephalon floorplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * floorplate medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000786 ] ## Cross-references @@ -37,15 +37,14 @@ ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [regional part of medulla oblongata](../../UBERON/78/UBERON_0002678.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms @@ -54,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003511.md b/md/UBERON/11/UBERON_0003511.md index fd6205a025..f2d5486320 100644 --- a/md/UBERON/11/UBERON_0003511.md +++ b/md/UBERON/11/UBERON_0003511.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003511 * *Label* = iris blood vessel - * *Definition* = A blood vessel that is part of a iris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a iris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003611.md b/md/UBERON/11/UBERON_0003611.md index ecfdd781e9..adb94b7ca7 100644 --- a/md/UBERON/11/UBERON_0003611.md +++ b/md/UBERON/11/UBERON_0003611.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003611 * *Label* = respiratory system elastic tissue - * *Definition* = An elastic tissue that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An elastic tissue that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003711.md b/md/UBERON/11/UBERON_0003711.md index bd38ea514a..0a29263906 100644 --- a/md/UBERON/11/UBERON_0003711.md +++ b/md/UBERON/11/UBERON_0003711.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003711 * *Label* = brachiocephalic vein - * *Definition* = The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] + * *Definition* = The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] ## Synonyms - * brachiocephalic venous tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4723] - * innominate vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4723] - * innomiate vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] - * innominate trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] - * innominate vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:529] - * innominate vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] - * innominate veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] - * vena brachiocephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena brachiocephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein] - * venae anonyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brachiocephalic venous tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4723 ] + * innominate vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4723 ] + * innomiate vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] + * innominate trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] + * innominate vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:529 ] + * innominate vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] + * innominate veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] + * vena brachiocephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein ] + * vena brachiocephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae anonyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A07.231.908.130 * OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA * SCTID:181371003 - * UMLS:C0006095 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Innominate_Vein] + * UMLS:C0006095 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Innominate_Vein ] * Wikipedia:Brachiocephalic_vein * galen:BrachiocephalicVein * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0003911.md b/md/UBERON/11/UBERON_0003911.md index 5ec5b76fb3..a0df292ecc 100644 --- a/md/UBERON/11/UBERON_0003911.md +++ b/md/UBERON/11/UBERON_0003911.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003911 * *Label* = choroid plexus epithelium - * *Definition* = An epithelium that is part of a choroid plexus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a choroid plexus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chorioid plexus of cerebral hemisphere epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chorioid plexus of cerebral hemisphere epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242811] + * chorioid plexus of cerebral hemisphere epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chorioid plexus of cerebral hemisphere epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242811 ] ## Cross-references * FMA:242811 * MA:0000824 - * UMLS:C1516506 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_Epithelium] + * UMLS:C1516506 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_Epithelium ] * ncithesaurus:Choroid_Plexus_Epithelium ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [choroid plexus](../../UBERON/86/UBERON_0001886.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004011.md b/md/UBERON/11/UBERON_0004011.md index 719e15f71d..9769a92601 100644 --- a/md/UBERON/11/UBERON_0004011.md +++ b/md/UBERON/11/UBERON_0004011.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004011 * *Label* = secondary muscle spindle - * *Definition* = the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000994] + * *Definition* = the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000994 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004111.md b/md/UBERON/11/UBERON_0004111.md index 79a654b76d..419dfe5795 100644 --- a/md/UBERON/11/UBERON_0004111.md +++ b/md/UBERON/11/UBERON_0004111.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004111 * *Label* = anatomical conduit - * *Definition* = any opening in the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen] + * *Definition* = any opening in the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen ] * *Comment* = note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature ## Synonyms - * foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003080] - * foramina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003080 ] + * foramina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004211.md b/md/UBERON/11/UBERON_0004211.md index 077bf6533f..d2213c0ba7 100644 --- a/md/UBERON/11/UBERON_0004211.md +++ b/md/UBERON/11/UBERON_0004211.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004211 * *Label* = nephron epithelium - * *Definition* = The nephron epithelium is a tissue that covers the surface of a nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072088] + * *Definition* = The nephron epithelium is a tissue that covers the surface of a nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072088 ] ## Synonyms - * epithelial tissue of nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nephron epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nephron epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nephron](../../UBERON/85/UBERON_0001285.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004311.md b/md/UBERON/11/UBERON_0004311.md index a14771a8f4..c71f5612e1 100644 --- a/md/UBERON/11/UBERON_0004311.md +++ b/md/UBERON/11/UBERON_0004311.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004311 * *Label* = distal phalanx of manual digit 2 - * *Definition* = A distal phalanx that is part of a hand digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a hand digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd digit of hand distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 2nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 2nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23946] - * distal phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23946] - * distal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second distal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23946] - * second finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 2nd digit of hand distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 2nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 2nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23946 ] + * distal phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23946 ] + * distal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second distal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23946 ] + * second finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004411.md b/md/UBERON/11/UBERON_0004411.md index b22f281709..9a5378a909 100644 --- a/md/UBERON/11/UBERON_0004411.md +++ b/md/UBERON/11/UBERON_0004411.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004411 * *Label* = proximal epiphysis of humerus - * *Definition* = The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus] + * *Definition* = The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus ] ## Synonyms - * proximal end of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23362] - * proximal humeral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper end of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23362] - * head of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus] - * humeral head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus] - * proximal humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus] - * upper extremity of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_extremity_of_humerus] + * proximal end of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23362 ] + * proximal humeral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper end of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23362 ] + * head of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus ] + * humeral head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus ] + * proximal humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus ] + * upper extremity of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_extremity_of_humerus ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004511.md b/md/UBERON/11/UBERON_0004511.md index 249dbd82bf..968bbcc29c 100644 --- a/md/UBERON/11/UBERON_0004511.md +++ b/md/UBERON/11/UBERON_0004511.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004511 * *Label* = skeletal muscle tissue of rectus abdominis - * *Definition* = A portion of skeletal muscle tissue that is part of a rectus abdominis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a rectus abdominis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rectus abdominis muscle](../../UBERON/82/UBERON_0002382.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004611.md b/md/UBERON/11/UBERON_0004611.md index 2dfefdb192..3c55c4c773 100644 --- a/md/UBERON/11/UBERON_0004611.md +++ b/md/UBERON/11/UBERON_0004611.md @@ -3,19 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004611 * *Label* = rib 12 - * *Definition* = In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Twelfth_rib] + * *Definition* = In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Twelfth_rib ] * *Comment* = elements are to be defined spatially/topologically ## Synonyms - * twelfth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8515] + * costa XII [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * twelfth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8515 ] ## Cross-references * FMA:8515 * MA:0001412 * SCTID:244667008 - * UMLS:C1709948 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_12] + * UMLS:C1709948 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_12 ] * Wikipedia:Twelfth_rib * http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray128.png/200px-Gray128.png @@ -38,8 +39,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 12 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004711.md b/md/UBERON/11/UBERON_0004711.md index eea6f804bf..53761b64f3 100644 --- a/md/UBERON/11/UBERON_0004711.md +++ b/md/UBERON/11/UBERON_0004711.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004711 * *Label* = jugular vein - * *Definition* = Any one of the several large veins of the neck that drain blood from the head[BTO]. Veins in the neck which drain the brain, face, and neck into the brachiocephalic or subclavian veins[GAID]. The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001744[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jugular_vein] + * *Definition* = Any one of the several large veins of the neck that drain blood from the head[BTO]. Veins in the neck which drain the brain, face, and neck into the brachiocephalic or subclavian veins[GAID]. The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001744, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jugular_vein ] ## Synonyms * jugular - * vena jugularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001744] + * vena jugularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001744 ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002154 * MESH:A07.231.908.498 * SCTID:244403000 - * UMLS:C0022427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Jugular_Vein] + * UMLS:C0022427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Jugular_Vein ] * Wikipedia:Jugular_vein * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004811.md b/md/UBERON/11/UBERON_0004811.md index 40c68a8743..f5e15199e8 100644 --- a/md/UBERON/11/UBERON_0004811.md +++ b/md/UBERON/11/UBERON_0004811.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004811 * *Label* = endometrium epithelium - * *Definition* = An epithelium that is part of a endometrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a endometrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon/histology notes: In rodents and primates, the uterine epithelium (the endometrium) is eroded away so that maternal blood comes into direct contact with the trophoblast surface (called haemochorial) [PMID:19829370] ## Synonyms - * endometrium epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of endometrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of endometrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of tunica mucosa (endometrium) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19829370] + * endometrium epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of endometrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of endometrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of tunica mucosa (endometrium) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19829370 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endometrium](../../UBERON/95/UBERON_0001295.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0004911.md b/md/UBERON/11/UBERON_0004911.md index d81e68446d..d109b27122 100644 --- a/md/UBERON/11/UBERON_0004911.md +++ b/md/UBERON/11/UBERON_0004911.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004911 * *Label* = epithelium of female gonad - * *Definition* = An epithelium surrounding an ovary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium surrounding an ovary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts ## Synonyms - * ovarian epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ovary epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ovarian sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004896[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * ovarian epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ovary epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ovarian sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004896, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005011.md b/md/UBERON/11/UBERON_0005011.md index 45ee78c663..eab2dfce0d 100644 --- a/md/UBERON/11/UBERON_0005011.md +++ b/md/UBERON/11/UBERON_0005011.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005011 * *Label* = mucosa of right uterine tube - * *Definition* = A mucosa that is part of a right uterine tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a right uterine tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of right fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of right oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of right uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of right fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of right oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right fallopian tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right fallopian tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right fallopian tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right fallopian tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right oviduct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right oviduct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right oviduct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right oviduct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right uterine tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right uterine tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right uterine tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right uterine tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of right fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of right oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of right uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of right fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of right oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right fallopian tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right fallopian tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right fallopian tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right fallopian tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right oviduct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right oviduct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right oviduct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right oviduct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right uterine tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right uterine tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right uterine tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right uterine tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right uterine tube](../../UBERON/02/UBERON_0001302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005111.md b/md/UBERON/11/UBERON_0005111.md index b7c6b7de4a..e38a683b5b 100644 --- a/md/UBERON/11/UBERON_0005111.md +++ b/md/UBERON/11/UBERON_0005111.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005111 * *Label* = metanephric pyramid - * *Definition* = Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072211] + * *Definition* = Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072211 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [kidney pyramid](../../UBERON/00/UBERON_0004200.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005211.md b/md/UBERON/11/UBERON_0005211.md index 27f3396192..cfdaa208f6 100644 --- a/md/UBERON/11/UBERON_0005211.md +++ b/md/UBERON/11/UBERON_0005211.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005211 * *Label* = renal medulla interstitium - * *Definition* = tissue surrounding the loop of Henle in the renal medulla.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovaryry_interstitium] + * *Definition* = tissue surrounding the loop of Henle in the renal medulla.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovaryry_interstitium ] * *Comment* = Function notes: It functions in renal water reabsorption by building up a high hypertonicity, which draws water out of the thin descending limb of the loop of Henle and the collecting duct system. This hypertonicity, in turn, is created by an efflux of urea from the inner medullary collecting duct. ## Synonyms - * kidney medulla interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002619] - * renal medullary interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18326] + * kidney medulla interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002619 ] + * renal medullary interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18326 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal medulla](../../UBERON/62/UBERON_0000362.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005311.md b/md/UBERON/11/UBERON_0005311.md index 50adb2aa08..3cc3c3f59e 100644 --- a/md/UBERON/11/UBERON_0005311.md +++ b/md/UBERON/11/UBERON_0005311.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005311 * *Label* = mammary placode - * *Definition* = The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060596] + * *Definition* = The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060596 ] * *Comment* = TODO develops_from ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005411.md b/md/UBERON/11/UBERON_0005411.md index b71a82871f..e4a2f61a5f 100644 --- a/md/UBERON/11/UBERON_0005411.md +++ b/md/UBERON/11/UBERON_0005411.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005511.md b/md/UBERON/11/UBERON_0005511.md index 1019c1d7ea..b224a3d5cc 100644 --- a/md/UBERON/11/UBERON_0005511.md +++ b/md/UBERON/11/UBERON_0005511.md @@ -6,7 +6,7 @@ ## Synonyms - * r4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001032] + * r4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001032 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005611.md b/md/UBERON/11/UBERON_0005611.md index 356a1c06a8..3155a91ad8 100644 --- a/md/UBERON/11/UBERON_0005611.md +++ b/md/UBERON/11/UBERON_0005611.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005611 * *Label* = inner canthus - * *Definition* = A corner of the medial (inner) part of an eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A corner of the medial (inner) part of an eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * medial palpebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59316] - * inner canthi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * medial canthus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001262] + * medial palpebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59316 ] + * inner canthi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * medial canthus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001262 ] * medial canthus of eye * nasal canthus @@ -20,7 +20,7 @@ * FMA:59316 * MA:0001262 * SCTID:362526003 - * UMLS:C1708516 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Canthus] + * UMLS:C1708516 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Canthus ] * VHOG:0000829 * ncithesaurus:Inner_Canthus @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The angle at the end of the palpebral fissure, the slit between the eyelids, close to the nose. [ISBN10:0124020607, p.263][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005711.md b/md/UBERON/11/UBERON_0005711.md index 73b014df10..a7cc4fda97 100644 --- a/md/UBERON/11/UBERON_0005711.md +++ b/md/UBERON/11/UBERON_0005711.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005711 * *Label* = foregut duodenum mesentery - * *Definition* = A mesentery of duodenum that is part of a foregut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery of duodenum that is part of a foregut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery of duodenum](../../UBERON/97/UBERON_0003397.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0005911.md b/md/UBERON/11/UBERON_0005911.md index a5becf3c7f..e2ff6e28f5 100644 --- a/md/UBERON/11/UBERON_0005911.md +++ b/md/UBERON/11/UBERON_0005911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005911 * *Label* = endo-epithelium - * *Definition* = Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69065] + * *Definition* = Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69065 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006011.md b/md/UBERON/11/UBERON_0006011.md index f06d9113fc..ba870063b0 100644 --- a/md/UBERON/11/UBERON_0006011.md +++ b/md/UBERON/11/UBERON_0006011.md @@ -6,7 +6,7 @@ ## Synonyms - * hyaloid veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005047[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hyaloid veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005047, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein internal to the eye. Isogai et al. 2001.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006211.md b/md/UBERON/11/UBERON_0006211.md index c692b08980..538748f0af 100644 --- a/md/UBERON/11/UBERON_0006211.md +++ b/md/UBERON/11/UBERON_0006211.md @@ -3,11 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006211 * *Label* = buccopharyngeal membrane - * *Definition* = The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccopharyngeal_membrane] + * *Definition* = The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012521 ] ## Synonyms - * oropharyngeal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccopharyngeal_membrane] + * oral membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012521 ] + * oral plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012521 ] + * oropharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccopharyngeal_membrane ] + * pharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012521, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -29,8 +32,8 @@ * [septum](../../UBERON/37/UBERON_0003037.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) * [part_of](../../BFO/50/BFO_0000050.md) some [mouth-foregut junction](../../UBERON/64/UBERON_0006264.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [stomodeum](../../UBERON/30/UBERON_0000930.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) @@ -43,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006311.md b/md/UBERON/11/UBERON_0006311.md index 576016635b..2b2552071c 100644 --- a/md/UBERON/11/UBERON_0006311.md +++ b/md/UBERON/11/UBERON_0006311.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006311 * *Label* = chamber of eyeball - * *Definition* = Chamber of eyeball[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58071] + * *Definition* = Chamber of eyeball[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58071 ] ## Synonyms - * eye chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002459] - * eyeball chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58071] - * chamber of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002085] + * eye chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002459 ] + * eyeball chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58071 ] + * chamber of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002085 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:58071 * MA:0002459 * SCTID:280540004 - * UMLS:C0459556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chamber_of_the_Eye] + * UMLS:C0459556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chamber_of_the_Eye ] * ncithesaurus:Chamber_of_the_Eye ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006611.md b/md/UBERON/11/UBERON_0006611.md index 08a8973bb5..bff29e844a 100644 --- a/md/UBERON/11/UBERON_0006611.md +++ b/md/UBERON/11/UBERON_0006611.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006611 * *Label* = exoskeleton - * *Definition* = Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exoskeleton] + * *Definition* = Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exoskeleton ] * *Comment* = Usage notes: not to be confused with dermal skeleton ## Synonyms - * lorica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lorica_(biology)] + * lorica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lorica_(biology) ] * test - * shell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004659] + * shell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004659 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = exoskeletal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006811.md b/md/UBERON/11/UBERON_0006811.md index c6626948c0..3f23371310 100644 --- a/md/UBERON/11/UBERON_0006811.md +++ b/md/UBERON/11/UBERON_0006811.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006811 * *Label* = occipital condyle - * *Definition* = The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exoccipital_condyle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_condyle] + * *Definition* = The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exoccipital_condyle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_condyle ] * *Comment* = birds have a single occipital condyle, mammals have two[WP] ## Synonyms - * condylus occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_condyle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * exoccipital condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exoccipital_condyle] + * condylus occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_condyle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * exoccipital condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exoccipital_condyle ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0006911.md b/md/UBERON/11/UBERON_0006911.md index 3263be2922..0c82218341 100644 --- a/md/UBERON/11/UBERON_0006911.md +++ b/md/UBERON/11/UBERON_0006911.md @@ -6,7 +6,7 @@ ## Synonyms - * digestive fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000346] + * digestive fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000346 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0007111.md b/md/UBERON/11/UBERON_0007111.md index a75c44bc5d..1ca9b18291 100644 --- a/md/UBERON/11/UBERON_0007111.md +++ b/md/UBERON/11/UBERON_0007111.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007111 * *Label* = Douglas' pouch - * *Definition* = The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch] + * *Definition* = The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch ] ## Synonyms - * excavatio recto-uterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728] - * excavatio rectouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pouch of douglas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728] - * recto-uterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728] - * rectouterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * cavum Douglassi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cul de sac of douglas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * cul-de-sac of douglsa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * douglas cul-de-sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * douglas pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * douglas' cul de sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * douglas' cul-de-sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * douglas' pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.025.600.225] - * excavatio rectouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fossa Douglasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recto-uterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch] - * rectouterine excavation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_pouch] - * rectouterine space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14728] + * excavatio recto-uterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728 ] + * excavatio rectouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pouch of douglas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728 ] + * recto-uterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728 ] + * rectouterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * cavum Douglassi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cul de sac of douglas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * cul-de-sac of douglsa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * douglas cul-de-sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * douglas pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * douglas' cul de sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * douglas' cul-de-sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * douglas' pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.025.600.225 ] + * excavatio rectouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fossa Douglasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recto-uterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch ] + * rectouterine excavation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_pouch ] + * rectouterine space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14728 ] ## Cross-references @@ -32,7 +32,7 @@ * GAID:20 * MESH:A01.047.025.600.225 * SCTID:181447009 - * UMLS:C1514801 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Recto-Vaginal_Pouch] + * UMLS:C1514801 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Recto-Vaginal_Pouch ] * Wikipedia:Recto-uterine_pouch * http://upload.wikimedia.org/wikipedia/commons/5/51/WeiblichesBeckenMedian.gif * ncithesaurus:Recto-Vaginal_Pouch @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0007311.md b/md/UBERON/11/UBERON_0007311.md index cc9ed2925d..cbc719c2a6 100644 --- a/md/UBERON/11/UBERON_0007311.md +++ b/md/UBERON/11/UBERON_0007311.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007311 * *Label* = sputum - * *Definition* = Matter ejected from the lungs, bronchi, and trachea, through the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = Matter ejected from the lungs, bronchi, and trachea, through the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * expectoration [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001297] + * expectoration [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001297 ] ## Cross-references @@ -16,7 +16,7 @@ * GAID:1171 * MA:0002536 * MESH:A12.200.808 - * UMLS:C0038056 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sputum] + * UMLS:C0038056 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sputum ] * ncithesaurus:Sputum ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0007711.md b/md/UBERON/11/UBERON_0007711.md index e59cfd5de8..f027406996 100644 --- a/md/UBERON/11/UBERON_0007711.md +++ b/md/UBERON/11/UBERON_0007711.md @@ -6,9 +6,9 @@ ## Synonyms - * sixth cervical dorsal root ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6319] - * sixth cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2608] - * sixth cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6319] + * sixth cervical dorsal root ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6319 ] + * sixth cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2608 ] + * sixth cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6319 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0007811.md b/md/UBERON/11/UBERON_0007811.md index 8356794f4e..ebf22a8e1c 100644 --- a/md/UBERON/11/UBERON_0007811.md +++ b/md/UBERON/11/UBERON_0007811.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007811 * *Label* = craniocervical region - * *Definition* = The anteriormost subdivision of the body that includes the head, jaws, pharyngeal region and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The anteriormost subdivision of the body that includes the head, jaws, pharyngeal region and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cephalic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/379] - * cephalic part of animal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head] - * cephalic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/379] - * head and neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:280881] + * cephalic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/379 ] + * cephalic part of animal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head ] + * cephalic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/379 ] + * head and neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:280881 ] * head or neck ## Cross-references @@ -20,7 +20,7 @@ * FMA:280881 * MA:0000006 * SCTID:361355005 - * UMLS:C0460004 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_and_Neck] + * UMLS:C0460004 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_and_Neck ] * WikipediaCategory:Head_and_neck * galen:HeadAndNeck * ncithesaurus:Head_and_Neck @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0008311.md b/md/UBERON/11/UBERON_0008311.md index 288b91099f..c5cffb72d2 100644 --- a/md/UBERON/11/UBERON_0008311.md +++ b/md/UBERON/11/UBERON_0008311.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008311 * *Label* = penile bulb artery - * *Definition* = a short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbourethral_artery] + * *Definition* = a short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbourethral_artery ] ## Synonyms - * arteria bulbi penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005087] - * artery of bulb of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20864] - * bulbourethral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005087] + * arteria bulbi penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005087 ] + * artery of bulb of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20864 ] + * bulbourethral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005087 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0008611.md b/md/UBERON/11/UBERON_0008611.md index 1d5f8b629c..4105eea47c 100644 --- a/md/UBERON/11/UBERON_0008611.md +++ b/md/UBERON/11/UBERON_0008611.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008611 * *Label* = scalene muscle - * *Definition* = Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] + * *Definition* = Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] ## Synonyms - * scalene muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scalenus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64829] - * lateral cervical muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * lateral cervical muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * lateral vertebral muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * m scalenus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scalene muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scalenes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scaleneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scaleni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] - * scalenus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalene_muscles] + * scalene muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scalenus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64829 ] + * lateral cervical muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * lateral cervical muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * lateral vertebral muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * m scalenus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scalene muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scalenes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scaleneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scaleni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] + * scalenus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalene_muscles ] ## Cross-references * FMA:64829 * SCTID:244843003 - * UMLS:C0448350 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scalene_Muscle] + * UMLS:C0448350 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scalene_Muscle ] * Wikipedia:Scalene_muscles * http://upload.wikimedia.org/wikipedia/commons/6/6e/Scalenus.png * ncithesaurus:Scalene_Muscle @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0008811.md b/md/UBERON/11/UBERON_0008811.md index 22e9d1119a..a4684280b2 100644 --- a/md/UBERON/11/UBERON_0008811.md +++ b/md/UBERON/11/UBERON_0008811.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008811 * *Label* = intromittent organ - * *Definition* = an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intromittent_organ] + * *Definition* = an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intromittent_organ ] * *Comment* = this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition ## Synonyms - * aedeagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004850[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * aedeagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004850, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * penis * copulatory organ @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that is an external structure of a male organism through which sperm is transferred to a female organism during mating.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008811 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0008911.md b/md/UBERON/11/UBERON_0008911.md index 4580adea10..99e6d2cb8f 100644 --- a/md/UBERON/11/UBERON_0008911.md +++ b/md/UBERON/11/UBERON_0008911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008911 * *Label* = chondral bone - * *Definition* = Replacement bone that forms within or surrounding a cartilaginous skeletal element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + zfin:curator] + * *Definition* = Replacement bone that forms within or surrounding a cartilaginous skeletal element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = zfin:curator ] * *Comment* = This class was introduced to be consistent with the ZFA hierarchy. The term was never introduced into VSAO. ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0009611.md b/md/UBERON/11/UBERON_0009611.md index 8b355ec058..c6140fe4d0 100644 --- a/md/UBERON/11/UBERON_0009611.md +++ b/md/UBERON/11/UBERON_0009611.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009611 * *Label* = midbrain neural plate - * *Definition* = A neural plate that develops_from a presumptive midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural plate that develops_from a presumptive midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [presumptive midbrain](../../UBERON/16/UBERON_0009616.md) and [neural plate](../../UBERON/75/UBERON_0003075.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0009911.md b/md/UBERON/11/UBERON_0009911.md index 681338050c..323d5255cf 100644 --- a/md/UBERON/11/UBERON_0009911.md +++ b/md/UBERON/11/UBERON_0009911.md @@ -10,7 +10,7 @@ ## Cross-references * FMA:45737 - * UMLS:C0921005 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lobule] + * UMLS:C0921005 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lobule ] * ncithesaurus:Lobule ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010011.md b/md/UBERON/11/UBERON_0010011.md index 3455f4291e..b27342e61a 100644 --- a/md/UBERON/11/UBERON_0010011.md +++ b/md/UBERON/11/UBERON_0010011.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010011 * *Label* = collection of basal ganglia - * *Definition* = Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_826] + * *Definition* = Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_826 ] * *Comment* = Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. ## Synonyms - * basal ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84013] - * basal ganglia set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84013] - * set of basal ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84013] + * basal ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84013 ] + * basal ganglia set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84013 ] + * set of basal ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84013 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0000184 * MESH:A08.186.211.730.885.105 * NIF_GrossAnatomy:birnlex_826 - * UMLS:C0004781 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basal_Ganglia] + * UMLS:C0004781 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basal_Ganglia ] * VHOG:0001696 * Wikipedia:Basal_ganglia * ncithesaurus:Basal_Ganglia @@ -34,9 +34,9 @@ * [aggregate regional part of brain](../../UBERON/09/UBERON_0010009.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cerebral subcortex](../../UBERON/54/UBERON_0000454.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Equivalencies @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010211.md b/md/UBERON/11/UBERON_0010211.md index 2d62166e93..3a48f32466 100644 --- a/md/UBERON/11/UBERON_0010211.md +++ b/md/UBERON/11/UBERON_0010211.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010211 * *Label* = granulation tissue - * *Definition* = Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003257] + * *Definition* = Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003257 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010311.md b/md/UBERON/11/UBERON_0010311.md index cde6144ae8..a0de6fe872 100644 --- a/md/UBERON/11/UBERON_0010311.md +++ b/md/UBERON/11/UBERON_0010311.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010311 * *Label* = scleral sesamoid bone - * *Definition* = A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * *Definition* = A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] * *Comment* = Structure notes: During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se ## Synonyms - * scleral sesamoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * scleral sesamoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] * scleral sesamoid element - * sesamoideum esclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * sesamoideum esclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010411.md b/md/UBERON/11/UBERON_0010411.md index 79f68e37bc..27a0eaacfb 100644 --- a/md/UBERON/11/UBERON_0010411.md +++ b/md/UBERON/11/UBERON_0010411.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010411 * *Label* = retroperitoneal fat pad - * *Definition* = encapsulated adipose tissue found on the dorsal side of the peritoneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005337] + * *Definition* = encapsulated adipose tissue found on the dorsal side of the peritoneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005337 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [peritoneum](../../UBERON/58/UBERON_0002358.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010511.md b/md/UBERON/11/UBERON_0010511.md index a1c3329f23..de328f25f4 100644 --- a/md/UBERON/11/UBERON_0010511.md +++ b/md/UBERON/11/UBERON_0010511.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010511 * *Label* = strand of awl hair - * *Definition* = A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000400[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Awn_hair] + * *Definition* = A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000400, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Awn_hair ] ## Synonyms - * awl hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001894] + * awl hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001894 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010711.md b/md/UBERON/11/UBERON_0010711.md index acb907cd8e..856e26a9d9 100644 --- a/md/UBERON/11/UBERON_0010711.md +++ b/md/UBERON/11/UBERON_0010711.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010711 * *Label* = pelvic fin skeleton - * *Definition* = Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001387] + * *Definition* = Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001387 ] * *Comment* = AO Notes: the girdle is part of the pelvic fin skeleton in ZFA - needs resolved ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0010911.md b/md/UBERON/11/UBERON_0010911.md index 836cfd295b..b8e8abf3af 100644 --- a/md/UBERON/11/UBERON_0010911.md +++ b/md/UBERON/11/UBERON_0010911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010911 * *Label* = ossicle - * *Definition* = Skeletal element that is often isolated, small, and variable in composition. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000132] + * *Definition* = Skeletal element that is often isolated, small, and variable in composition. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000132 ] * *Comment* = Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, 'Panda's thumb' (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids. ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010911 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0011011.md b/md/UBERON/11/UBERON_0011011.md index 069991bd02..37789eee51 100644 --- a/md/UBERON/11/UBERON_0011011.md +++ b/md/UBERON/11/UBERON_0011011.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011011 * *Label* = brachioradialis - * *Definition* = Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachioradialis] + * *Definition* = Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm. It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachioradialis ] ## Synonyms - * brachioradialis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachioradialis] - * musculus brachioradialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachioradialis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brachioradialis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachioradialis ] + * musculus brachioradialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachioradialis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0011111.md b/md/UBERON/11/UBERON_0011111.md index 5ae58a2636..9f54b33018 100644 --- a/md/UBERON/11/UBERON_0011111.md +++ b/md/UBERON/11/UBERON_0011111.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011111 * *Label* = humeroradial joint - * *Definition* = The humeroradial joint, the joint between the head of the radius and the capitulum of the humerus, is a hinge joint. The bony surfaces would of themselves constitute an enarthrosis and allow movement in all directions, were it not for the annular ligament, by which the head of the radius is bound to the radial notch of the ulna, and which prevents any separation of the two bones laterally. It is to the same ligament that the head of the radius owes its security from dislocation, which would otherwise tend to occur, from the shallowness of the cup-like surface on the head of the radius. In fact, but for this ligament, the tendon of the Biceps brachii would be liable to pull the head of the radius out of the joint. The head of the radius is not in complete contact with the capitulum of the humerus in all positions of the joint. The capitulum occupies only the anterior and inferior surfaces of the lower end of the humerus, so that in complete extension a part of the radial head can be plainly felt projecting at the back of the articulation. In full flexion the movement of the radial head is hampered by the compression of the surrounding soft parts, so that the freest rotatory movement of the radius on the humerus (pronation and supination) takes place in semiflexion, in which position the two articular surfaces are in most intimate contact. Flexion and extension of the elbow-joint are limited by the tension of the structures on the front and back of the joint; the limitation of flexion is also aided by the soft structures of the arm and forearm coming into contact. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Humeroradial_joint] + * *Definition* = The humeroradial joint, the joint between the head of the radius and the capitulum of the humerus, is a hinge joint. The bony surfaces would of themselves constitute an enarthrosis and allow movement in all directions, were it not for the annular ligament, by which the head of the radius is bound to the radial notch of the ulna, and which prevents any separation of the two bones laterally. It is to the same ligament that the head of the radius owes its security from dislocation, which would otherwise tend to occur, from the shallowness of the cup-like surface on the head of the radius. In fact, but for this ligament, the tendon of the Biceps brachii would be liable to pull the head of the radius out of the joint. The head of the radius is not in complete contact with the capitulum of the humerus in all positions of the joint. The capitulum occupies only the anterior and inferior surfaces of the lower end of the humerus, so that in complete extension a part of the radial head can be plainly felt projecting at the back of the articulation. In full flexion the movement of the radial head is hampered by the compression of the surrounding soft parts, so that the freest rotatory movement of the radius on the humerus (pronation and supination) takes place in semiflexion, in which position the two articular surfaces are in most intimate contact. Flexion and extension of the elbow-joint are limited by the tension of the structures on the front and back of the joint; the limitation of flexion is also aided by the soft structures of the arm and forearm coming into contact. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Humeroradial_joint ] ## Synonyms - * articulatio humeroradialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Humeroradial_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio humeroradialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Humeroradial_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * humero-radial joint ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [connects](../../ts/core#connects.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0011311.md b/md/UBERON/11/UBERON_0011311.md index 00e0f4a1f2..d62c75e3ac 100644 --- a/md/UBERON/11/UBERON_0011311.md +++ b/md/UBERON/11/UBERON_0011311.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011311 * *Label* = hyoepiglottic ligament - * *Definition* = an elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoepiglottic_ligament] + * *Definition* = an elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoepiglottic_ligament ] ## Synonyms - * hyo-epiglottic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55227] - * igamentum hyoepiglotticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoepiglottic_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hyo-epiglottic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55227 ] + * igamentum hyoepiglotticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoepiglottic_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:55227 * SCTID:279552007 - * UMLS:C0225515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hyoepiglottic_Ligament] + * UMLS:C0225515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hyoepiglottic_Ligament ] * Wikipedia:Hyoepiglottic_ligament * ncithesaurus:Hyoepiglottic_Ligament @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0011511.md b/md/UBERON/11/UBERON_0011511.md index 59cf9ab424..1d071a909a 100644 --- a/md/UBERON/11/UBERON_0011511.md +++ b/md/UBERON/11/UBERON_0011511.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011511 * *Label* = iliococcygeus muscle - * *Definition* = The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] + * *Definition* = The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] ## Synonyms - * iliococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19092] - * musculus iliococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * iliococcygeal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] - * iliococcygei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] - * iliococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] - * levator ani - iliococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] - * levator ani-iliococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliococcygeus_muscle] + * iliococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19092 ] + * musculus iliococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * iliococcygeal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] + * iliococcygei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] + * iliococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] + * levator ani - iliococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] + * levator ani-iliococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliococcygeus_muscle ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0011611.md b/md/UBERON/11/UBERON_0011611.md index 8c446b3303..6403152a56 100644 --- a/md/UBERON/11/UBERON_0011611.md +++ b/md/UBERON/11/UBERON_0011611.md @@ -6,22 +6,22 @@ ## Synonyms - * anterior ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * anterohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * ceratohyal anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * ceratohyal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] + * anterior ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * anterohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * ceratohyal anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * ceratohyal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] * ceratohyoid bone - * distal ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * rostral ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578] - * ceratohyoid [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * anterohyals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ceratohyale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000666] - * ceratohyals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000578[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * hyale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000666] - * hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000666] - * keratohyale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000666] - * zungenbeinknorpel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000666] + * distal ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * rostral ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578 ] + * ceratohyoid [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * anterohyals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ceratohyale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000666 ] + * ceratohyals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000578, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * hyale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000666 ] + * hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000666 ] + * keratohyale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000666 ] + * zungenbeinknorpel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000666 ] ## Cross-references @@ -53,8 +53,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps ceratohyal-dorsal hypohyal joint (TAO:0001843)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps ceratohyal-ventral hypohyal joint (TAO:0001844)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps epihyal-ceratohyal joint (TAO:0001842)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0012111.md b/md/UBERON/11/UBERON_0012111.md index b5a596aa95..06a540a04d 100644 --- a/md/UBERON/11/UBERON_0012111.md +++ b/md/UBERON/11/UBERON_0012111.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012111 * *Label* = diastema - * *Definition* = A space or gap between two teeth. Many species of mammals have diastemata as a normal feature, most commonly between the incisors and molars. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Diastema_(dentistry)] + * *Definition* = A space or gap between two teeth. Many species of mammals have diastemata as a normal feature, most commonly between the incisors and molars. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Diastema_(dentistry) ] ## Synonyms * interdental space - * diastemata [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * diastemata [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,12 +31,14 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013134 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0012311.md b/md/UBERON/11/UBERON_0012311.md index 8a5a98a4c1..7fa769bd56 100644 --- a/md/UBERON/11/UBERON_0012311.md +++ b/md/UBERON/11/UBERON_0012311.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012311 * *Label* = deep anterior cervical lymph node - * *Definition* = The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_anterior_cervical_lymph_nodes] + * *Definition* = The deep anterior cervical lymph nodes are found near the middle cricothyroid ligament and the trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_anterior_cervical_lymph_nodes ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012311 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0013211.md b/md/UBERON/11/UBERON_0013211.md index e861f4e443..a9073be138 100644 --- a/md/UBERON/11/UBERON_0013211.md +++ b/md/UBERON/11/UBERON_0013211.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013211 * *Label* = cerumen gland - * *Definition* = A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal. Ceruminous glands are simple, coiled, tubular glands made up of an inner secretory layer of cells and an outer myoepithelial layer of cells. The glands drain into larger ducts, which then drain into the guard hairs that reside in the external auditory canal. Here they produce cerumen, or earwax, by mixing their secretion with sebum and dead epidermal cells. Cerumen keeps the eardrum pliable, lubricates and cleans the external auditory canal, waterproofs the canal, kills bacteria, and serves as a barrier to trap foreign particles (dust, fungal spores, etc.) by coating the guard hairs of the ear, making them sticky. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ceruminous_glands] + * *Definition* = A specialized sudoriferous gland (sweat glands) located subcutaneously in the external auditory canal. Ceruminous glands are simple, coiled, tubular glands made up of an inner secretory layer of cells and an outer myoepithelial layer of cells. The glands drain into larger ducts, which then drain into the guard hairs that reside in the external auditory canal. Here they produce cerumen, or earwax, by mixing their secretion with sebum and dead epidermal cells. Cerumen keeps the eardrum pliable, lubricates and cleans the external auditory canal, waterproofs the canal, kills bacteria, and serves as a barrier to trap foreign particles (dust, fungal spores, etc.) by coating the guard hairs of the ear, making them sticky. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ceruminous_glands ] ## Synonyms @@ -14,7 +14,7 @@ ## Cross-references * SCTID:368648008 - * UMLS:C0229352 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ceruminous_Gland] + * UMLS:C0229352 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ceruminous_Gland ] * Wikipedia:Ceruminous_glands * ncithesaurus:Ceruminous_Gland @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013211 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0013411.md b/md/UBERON/11/UBERON_0013411.md index 477bc20ad8..99d567f5d9 100644 --- a/md/UBERON/11/UBERON_0013411.md +++ b/md/UBERON/11/UBERON_0013411.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013411 * *Label* = cranial cavity - * *Definition* = The cranial cavity, or intracranial space, is the space formed inside the skull. The brain occupies the cranial cavity, which is lined by the meninges and which contains cerebrospinal fluid to cushion blows. Eight fused cranial bones together form the cranial cavity: the frontal, occipital, sphenoid and ethmoid bones, and two each of the parietal and temporal bones. The capacity of an adult human cranial cavity is 1,200-1,700 cm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_cavity] + * *Definition* = The cranial cavity, or intracranial space, is the space formed inside the skull. The brain occupies the cranial cavity, which is lined by the meninges and which contains cerebrospinal fluid to cushion blows. Eight fused cranial bones together form the cranial cavity: the frontal, occipital, sphenoid and ethmoid bones, and two each of the parietal and temporal bones. The capacity of an adult human cranial cavity is 1,200-1,700 cm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_cavity ] ## Synonyms - * intracranial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_cavity] - * intracranial space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_cavity] + * intracranial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_cavity ] + * intracranial space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_cavity ] ## Cross-references * FMA:9644 * NeuroNames:2806 * SCTID:264452006 - * UMLS:C0230041 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cranial_Cavity] + * UMLS:C0230041 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cranial_Cavity ] * Wikipedia:Cranial_cavity * http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg * ncithesaurus:Cranial_Cavity @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [skull](../../UBERON/29/UBERON_0003129.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0013511.md b/md/UBERON/11/UBERON_0013511.md index fcba1c77a1..b62fcffaa3 100644 --- a/md/UBERON/11/UBERON_0013511.md +++ b/md/UBERON/11/UBERON_0013511.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013511 * *Label* = ambiens muscle - * *Definition* = A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A long muscle found in reptiles that originates on the ilium and crosses the acetabulum and the knee joint before being inserted on the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tendon of the ambiens muscle passes obliquely over the knee joint. It assists in the control of the birds toes. This muscle is present in some reptiles but not mammals. It is present in caiques and some other South American genera, but missing in most parrot genera. This was first noted by Garrod (1874) who proposed using this and other anatomical differences to classify parrots. For oproperty_value external_definitionanatomical differences among parrots see carotid arteries, furcula, and uropygial gland - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0013711.md b/md/UBERON/11/UBERON_0013711.md index 24ba7a501c..95d978bf7b 100644 --- a/md/UBERON/11/UBERON_0013711.md +++ b/md/UBERON/11/UBERON_0013711.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013711 * *Label* = posterior inferior iliac spine - * *Definition* = The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior inferior iliac spine corresponds with the posterior extremity of the auricular surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_inferior_iliac_spine] + * *Definition* = The posterior border of the ala, shorter than the anterior, also presents two projections separated by a notch, the posterior superior iliac spine and the posterior inferior iliac spine. The posterior inferior iliac spine corresponds with the posterior extremity of the auricular surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_inferior_iliac_spine ] ## Synonyms - * posterior inferior iliac spine (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63615] + * posterior inferior iliac spine (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63615 ] * posterior inferior spine of the ilium ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0014411.md b/md/UBERON/11/UBERON_0014411.md index 1beb2328dc..5ae61fb500 100644 --- a/md/UBERON/11/UBERON_0014411.md +++ b/md/UBERON/11/UBERON_0014411.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014411 * *Label* = greater sciatic notch - * *Definition* = On the dorsal border of the wing of the ilium , at it's junction with the shaft is a cut away. This forms the Greater sciatic notch. The sciatic nerve runs over the notch in passage to the hindlimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:865] + * *Definition* = On the dorsal border of the wing of the ilium , at it's junction with the shaft is a cut away. This forms the Greater sciatic notch. The sciatic nerve runs over the notch in passage to the hindlimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:865 ] ## Synonyms * greater sacrosciatic notch - * incisura ischiadica major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_sciatic_notch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * incisura ischiadica major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_sciatic_notch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = deep indentation in the posterior border of the hip bone at the point of union of the ilium and ischium[HP:0010456]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014411 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0014511.md b/md/UBERON/11/UBERON_0014511.md index 187e459fe2..8729f73d53 100644 --- a/md/UBERON/11/UBERON_0014511.md +++ b/md/UBERON/11/UBERON_0014511.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014511 * *Label* = somatosensory system - * *Definition* = The sensory system for the sense of touch and pain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090818] + * *Definition* = The sensory system for the sense of touch and pain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090818 ] ## Synonyms - * somatosensory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090818] + * somatosensory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090818 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014511 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0014611.md b/md/UBERON/11/UBERON_0014611.md index 5c7803c604..760ec9dc92 100644 --- a/md/UBERON/11/UBERON_0014611.md +++ b/md/UBERON/11/UBERON_0014611.md @@ -6,14 +6,14 @@ ## Synonyms - * apex of thoracic spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * apex of thoracic spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1427] + * apex of thoracic spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * apex of thoracic spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1427 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1427 * SCTID:367877009 - * UMLS:C0228629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1427] + * UMLS:C0228629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1427 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014611 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0014711.md b/md/UBERON/11/UBERON_0014711.md index 7f5060df96..fdf4d8a35f 100644 --- a/md/UBERON/11/UBERON_0014711.md +++ b/md/UBERON/11/UBERON_0014711.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carapacial ridge](../../UBERON/10/UBERON_0014710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014711 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0015011.md b/md/UBERON/11/UBERON_0015011.md index 95c32ad63a..37802b9e9a 100644 --- a/md/UBERON/11/UBERON_0015011.md +++ b/md/UBERON/11/UBERON_0015011.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015011 * *Label* = tibiotarsus endochondral element - * *Definition* = A tibiotarsus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A tibiotarsus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * tibiotarsus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * tibiotarsus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * tibiotarsus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * tibiotarsus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [tibiotarsus cartilage element](../../UBERON/02/UBERON_0010902.md)or[tibiotarsus pre-cartilage condensation](../../UBERON/03/UBERON_0010903.md)or[tibiotarsus](../../UBERON/94/UBERON_0008194.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_0015111.md b/md/UBERON/11/UBERON_0015111.md index a769f761f5..4ddaf99d07 100644 --- a/md/UBERON/11/UBERON_0015111.md +++ b/md/UBERON/11/UBERON_0015111.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015111 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_1000011.md b/md/UBERON/11/UBERON_1000011.md index 69f28a5756..c939722ae6 100644 --- a/md/UBERON/11/UBERON_1000011.md +++ b/md/UBERON/11/UBERON_1000011.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000011 * *Label* = labial commissure - * *Definition* = Anatomical structure consisting of either corner of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labial_commissure_of_mouth] + * *Definition* = Anatomical structure consisting of either corner of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labial_commissure_of_mouth ] ## Synonyms - * commissura labiorum oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labial_commissure_of_mouth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * commissura labiorum oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labial_commissure_of_mouth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * corner of mouth ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000011 + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000211.md b/md/UBERON/11/UBERON_2000211.md index 0458972351..312dd4f16e 100644 --- a/md/UBERON/11/UBERON_2000211.md +++ b/md/UBERON/11/UBERON_2000211.md @@ -6,7 +6,7 @@ ## Synonyms - * gill lamellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000211[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * gill lamellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000211, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000311.md b/md/UBERON/11/UBERON_2000311.md index 7dc0233795..0d4610fc8b 100644 --- a/md/UBERON/11/UBERON_2000311.md +++ b/md/UBERON/11/UBERON_2000311.md @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000411.md b/md/UBERON/11/UBERON_2000411.md index 697e4746dd..5c1d45a983 100644 --- a/md/UBERON/11/UBERON_2000411.md +++ b/md/UBERON/11/UBERON_2000411.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior crista primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000411[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * posterior crista primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000411, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000611.md b/md/UBERON/11/UBERON_2000611.md index 076e6f3763..f0f7c6da0d 100644 --- a/md/UBERON/11/UBERON_2000611.md +++ b/md/UBERON/11/UBERON_2000611.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000711.md b/md/UBERON/11/UBERON_2000711.md index 5919a402cb..76c35e1a09 100644 --- a/md/UBERON/11/UBERON_2000711.md +++ b/md/UBERON/11/UBERON_2000711.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000711 * *Label* = DEL - * *Definition* = A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * DEL cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000711[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * deep cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * DEL cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000711, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * deep cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2000911.md b/md/UBERON/11/UBERON_2000911.md index 9aee17de1e..99fc86bb49 100644 --- a/md/UBERON/11/UBERON_2000911.md +++ b/md/UBERON/11/UBERON_2000911.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000911 * *Label* = transverse process of neural arch 3 - * *Definition* = Endochondral bone that is the anterodorsally oriented process of the third neural arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone that is the anterodorsally oriented process of the third neural arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anterodorsal process of neural arch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000911] - * transverse process of the third vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000911] + * anterodorsal process of neural arch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000911 ] + * transverse process of the third vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000911 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2001011.md b/md/UBERON/11/UBERON_2001011.md index 3881a1716d..d9470daa5a 100644 --- a/md/UBERON/11/UBERON_2001011.md +++ b/md/UBERON/11/UBERON_2001011.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001011[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001011, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_2001511.md b/md/UBERON/11/UBERON_2001511.md index 8cd1ba072d..bbffb161b1 100644 --- a/md/UBERON/11/UBERON_2001511.md +++ b/md/UBERON/11/UBERON_2001511.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001511 * *Label* = interhyal cartilage - * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = It articulates ventrally with the posterior end of the ceratohyal cartilage or the posterior ceratohyal. ## Synonyms - * stylohyal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001511] + * stylohyal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001511 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2000218 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2001611.md b/md/UBERON/11/UBERON_2001611.md index 35709a6ab1..32a5b6c346 100644 --- a/md/UBERON/11/UBERON_2001611.md +++ b/md/UBERON/11/UBERON_2001611.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001611 * *Label* = quadrate posterodorsal process - * *Definition* = Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2001711.md b/md/UBERON/11/UBERON_2001711.md index 5cd6e30f34..3f32a8d1ff 100644 --- a/md/UBERON/11/UBERON_2001711.md +++ b/md/UBERON/11/UBERON_2001711.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001711 * *Label* = frontal-pterotic joint - * *Definition* = Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [actinopterygian frontal bone](../../UBERON/66/UBERON_0004866.md) and [core#connects](../../ts/core#connects.md) some [pterotic](../../UBERON/76/UBERON_2000576.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2001811.md b/md/UBERON/11/UBERON_2001811.md index 4037cf71ae..3fd11d43e0 100644 --- a/md/UBERON/11/UBERON_2001811.md +++ b/md/UBERON/11/UBERON_2001811.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001811 * *Label* = infraorbital sensory canal - * *Definition* = Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with otic and supraorbital sensory canals at their union. ## Synonyms - * infraorbital canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001811] + * infraorbital canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001811 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2001911.md b/md/UBERON/11/UBERON_2001911.md index 7b2fa59e5e..31ddaceea8 100644 --- a/md/UBERON/11/UBERON_2001911.md +++ b/md/UBERON/11/UBERON_2001911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001911 * *Label* = pharyngobranchial 2 element - * *Definition* = Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2002011.md b/md/UBERON/11/UBERON_2002011.md index 8c96a3b42e..5e629368ec 100644 --- a/md/UBERON/11/UBERON_2002011.md +++ b/md/UBERON/11/UBERON_2002011.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002011 * *Label* = lateral fontanel of frontal - * *Definition* = Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Original reference: de Pinna MCC, Vari RP. 1995. Monophyly and phylogenetic diagnosis of the family Cetopsidae, with synonymization of the Helogenidae (Teleostei: Siluriformes). Smithsonian Contributions to Zoology 571: 1-26. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2002111.md b/md/UBERON/11/UBERON_2002111.md index 065cf92988..afe77e6f0a 100644 --- a/md/UBERON/11/UBERON_2002111.md +++ b/md/UBERON/11/UBERON_2002111.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2005011.md b/md/UBERON/11/UBERON_2005011.md index d4530acab9..f44cc0cb44 100644 --- a/md/UBERON/11/UBERON_2005011.md +++ b/md/UBERON/11/UBERON_2005011.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005011 * *Label* = pseudobranchial artery - * *Definition* = A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2005211.md b/md/UBERON/11/UBERON_2005211.md index bc4724d413..dd71585a9d 100644 --- a/md/UBERON/11/UBERON_2005211.md +++ b/md/UBERON/11/UBERON_2005211.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon lateral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005211] + * mesencephalon lateral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005211 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_2005311.md b/md/UBERON/11/UBERON_2005311.md index b1915da9cc..125ba091b4 100644 --- a/md/UBERON/11/UBERON_2005311.md +++ b/md/UBERON/11/UBERON_2005311.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005311 * *Label* = pronephric glomerular capsule epithelium - * *Definition* = Simple squamous epithelium that lines the capsule of the pronephric glomerulus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Simple squamous epithelium that lines the capsule of the pronephric glomerulus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * pronephric parietal epithelial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005311] + * pronephric parietal epithelial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005311 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2005411.md b/md/UBERON/11/UBERON_2005411.md index 88b4962d2c..2cdc7e68af 100644 --- a/md/UBERON/11/UBERON_2005411.md +++ b/md/UBERON/11/UBERON_2005411.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_2007011.md b/md/UBERON/11/UBERON_2007011.md index 6e5c1512b2..bd0bfaabc5 100644 --- a/md/UBERON/11/UBERON_2007011.md +++ b/md/UBERON/11/UBERON_2007011.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007011 * *Label* = obsolete vagal root - * *Definition* = Part of cranial nerve X. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Part of cranial nerve X. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * rX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007011] - * vagus root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007011] + * rX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007011 ] + * vagus root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007011 ] ## Cross-references @@ -31,8 +31,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011213 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_3000111.md b/md/UBERON/11/UBERON_3000111.md index 7a28069a00..a5b108a8ad 100644 --- a/md/UBERON/11/UBERON_3000111.md +++ b/md/UBERON/11/UBERON_3000111.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_3000711.md b/md/UBERON/11/UBERON_3000711.md index 06727e8183..8bbfb0ac51 100644 --- a/md/UBERON/11/UBERON_3000711.md +++ b/md/UBERON/11/UBERON_3000711.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000711 * *Label* = procoelous - * *Definition* = Holochordal vertebral centra that are concave anteriorly and convex posteriorly; they bear a condyle on the posterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Holochordal vertebral centra that are concave anteriorly and convex posteriorly; they bear a condyle on the posterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_3000811.md b/md/UBERON/11/UBERON_3000811.md index ac738f68d9..0f7607683b 100644 --- a/md/UBERON/11/UBERON_3000811.md +++ b/md/UBERON/11/UBERON_3000811.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000811 * *Label* = glenoid end of clavicle - * *Definition* = Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * extremitas glenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000811] + * extremitas glenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000811 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_3000911.md b/md/UBERON/11/UBERON_3000911.md index 7703864a09..724f727347 100644 --- a/md/UBERON/11/UBERON_3000911.md +++ b/md/UBERON/11/UBERON_3000911.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000911 * *Label* = foramen nutritium exterius - * *Definition* = Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_3010011.md b/md/UBERON/11/UBERON_3010011.md index b57c961da9..fd55c30be4 100644 --- a/md/UBERON/11/UBERON_3010011.md +++ b/md/UBERON/11/UBERON_3010011.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_3010311.md b/md/UBERON/11/UBERON_3010311.md index e977a9e5f8..0db547d0c6 100644 --- a/md/UBERON/11/UBERON_3010311.md +++ b/md/UBERON/11/UBERON_3010311.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010311 * *Label* = obsolete T cell - * *Definition* = A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000084 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/11/UBERON_3010711.md b/md/UBERON/11/UBERON_3010711.md index ff0d702091..c48e03619a 100644 --- a/md/UBERON/11/UBERON_3010711.md +++ b/md/UBERON/11/UBERON_3010711.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010711 * *Label* = levator mandibulae externus superficialis - * *Definition* = Responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_4100011.md b/md/UBERON/11/UBERON_4100011.md index 688f88627b..3acdc95bc0 100644 --- a/md/UBERON/11/UBERON_4100011.md +++ b/md/UBERON/11/UBERON_4100011.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_4200011.md b/md/UBERON/11/UBERON_4200011.md index 72bca1802a..de6b7e11e0 100644 --- a/md/UBERON/11/UBERON_4200011.md +++ b/md/UBERON/11/UBERON_4200011.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_4200111.md b/md/UBERON/11/UBERON_4200111.md index 324f83db81..af1c817bad 100644 --- a/md/UBERON/11/UBERON_4200111.md +++ b/md/UBERON/11/UBERON_4200111.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/11/UBERON_4440011.md b/md/UBERON/11/UBERON_4440011.md index ab3a8fb252..3ad6877749 100644 --- a/md/UBERON/11/UBERON_4440011.md +++ b/md/UBERON/11/UBERON_4440011.md @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000012.md b/md/UBERON/12/UBERON_0000012.md index e28adcad4b..758db66da1 100644 --- a/md/UBERON/12/UBERON_0000012.md +++ b/md/UBERON/12/UBERON_0000012.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000012 * *Label* = somatic nervous system - * *Definition* = Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100301] + * *Definition* = Part of peripheral nervous system that includes the somatic parts of the cranial and spinal nerves and their ganglia and the peripheral sensory receptors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100301 ] ## Synonyms * PNS - somatic - * somatic nervous system, somatic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100301] - * somatic peripheral nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100301] + * somatic nervous system, somatic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100301 ] + * somatic peripheral nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100301 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000112.md b/md/UBERON/12/UBERON_0000112.md index 1e751016c0..d1cdb7e168 100644 --- a/md/UBERON/12/UBERON_0000112.md +++ b/md/UBERON/12/UBERON_0000112.md @@ -7,7 +7,7 @@ ## Synonyms - * immature stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:FB] + * immature stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:FB ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The stage of being a sexually immature adult animal[XAO:1000010]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000212.md b/md/UBERON/12/UBERON_0000212.md index 6ff58e2759..2f7487f7b4 100644 --- a/md/UBERON/12/UBERON_0000212.md +++ b/md/UBERON/12/UBERON_0000212.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000212 * *Label* = toilet claw - * *Definition* = specialized claw or nail on the foot of certain primates, used for personal grooming. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toilet-claw] + * *Definition* = specialized claw or nail on the foot of certain primates, used for personal grooming. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toilet-claw ] ## Synonyms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-05-19T08:19:58Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000312.md b/md/UBERON/12/UBERON_0000312.md index c23e4dd508..686934b0be 100644 --- a/md/UBERON/12/UBERON_0000312.md +++ b/md/UBERON/12/UBERON_0000312.md @@ -6,14 +6,14 @@ ## Synonyms - * cambial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234358] - * cambial layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234358] + * cambial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234358 ] + * cambial layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234358 ] * cambium - * cambium layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234358] - * inner cambial layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234358] + * cambium layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234358 ] + * inner cambial layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234358 ] * internal layer of periosteum * internal periosteum - * osteogenic layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periosteum] + * osteogenic layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periosteum ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000412.md b/md/UBERON/12/UBERON_0000412.md index aff525eef6..417d9b3362 100644 --- a/md/UBERON/12/UBERON_0000412.md +++ b/md/UBERON/12/UBERON_0000412.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000412 * *Label* = dermal papilla - * *Definition* = small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermal_papillae] + * *Definition* = small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermal_papillae ] * *Comment* = Consider adding grouping class for TAO:0001995 ## Synonyms - * dermal papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * follicular papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70737] - * DPC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * dermal papilla cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * hair follicle dermal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010687] - * papilla corii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * papilla dermatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * papilla dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * papilla of corium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] - * papillae dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermal_papillae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * skin papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001858] + * dermal papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * follicular papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70737 ] + * DPC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * dermal papilla cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * hair follicle dermal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010687 ] + * papilla corii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * papilla dermatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * papilla dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * papilla of corium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] + * papillae dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermal_papillae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * skin papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001858 ] ## Cross-references @@ -26,7 +26,7 @@ * CALOHA:TS-0431 * FMA:70737 * SCTID:320101005 - * UMLS:C0221931 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dermal_Papilla] + * UMLS:C0221931 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dermal_Papilla ] * Wikipedia:Dermal_papillae * http://upload.wikimedia.org/wikipedia/commons/3/34/Skin.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Skin.jpg/200px-Skin.jpg @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0000912.md b/md/UBERON/12/UBERON_0000912.md index 6b15d21b16..b93fcb78a8 100644 --- a/md/UBERON/12/UBERON_0000912.md +++ b/md/UBERON/12/UBERON_0000912.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000912 * *Label* = mucus - * *Definition* = Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucus] + * *Definition* = Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucus ] ## Synonyms @@ -16,7 +16,7 @@ * GAID:1164 * MESH:A12.200.503 * OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA - * UMLS:C0026727 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mucus] + * UMLS:C0026727 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mucus ] * Wikipedia:Mucus * galen:Mucus * ncithesaurus:Mucus @@ -39,8 +39,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mucoid * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mucous - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001012.md b/md/UBERON/12/UBERON_0001012.md index ef91879884..a6ca3732c8 100644 --- a/md/UBERON/12/UBERON_0001012.md +++ b/md/UBERON/12/UBERON_0001012.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001012 * *Label* = head of radius - * *Definition* = The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_radius] + * *Definition* = The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_radius ] ## Synonyms - * radial head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33773] - * caput radii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_radius[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * radial head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33773 ] + * caput radii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_radius, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001112.md b/md/UBERON/12/UBERON_0001112.md index 0faf58244c..a0bab27bb2 100644 --- a/md/UBERON/12/UBERON_0001112.md +++ b/md/UBERON/12/UBERON_0001112.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001112 * *Label* = latissimus dorsi muscle - * *Definition* = The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Latissimus_dorsi_muscle] + * *Definition* = The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Latissimus_dorsi_muscle ] * *Comment* = Dorsal group[Kardong] ## Synonyms * dorsal latissimus muscle - * latissimi dorsi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * latissimi dorsi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * latissimus dorsi * musculus latissimus dorsi - * musculus latissimus dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Latissimus_dorsi_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus latissimus dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Latissimus_dorsi_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:13357 * MA:0002331 * SCTID:181747008 - * UMLS:C0224362 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Musculus_Latissimus_Dorsi] + * UMLS:C0224362 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Musculus_Latissimus_Dorsi ] * VHOG:0000930 * Wikipedia:Latissimus_dorsi_muscle * http://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png @@ -56,8 +56,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001212.md b/md/UBERON/12/UBERON_0001212.md index 659d02fcd6..bba3312faf 100644 --- a/md/UBERON/12/UBERON_0001212.md +++ b/md/UBERON/12/UBERON_0001212.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001212 * *Label* = duodenal gland - * *Definition* = compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brunner's_glands] + * *Definition* = compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brunner's_glands ] * *Comment* = Editor note: currently defined as equivalent to any submucosal gland in the duodenum. Taxon notes: Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds [ISBN:9780521617147] ## Synonyms - * Brunner's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15060] - * gland of Brunner [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15060] + * Brunner's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15060 ] + * gland of Brunner [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15060 ] * submucosal gland of duodenum - * glandula duodenales Brunneri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002376[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandula duodenales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002376[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula duodenales Brunneri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002376, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandula duodenales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002376, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0001551 * MESH:A03.492.411.620.270.322 * SCTID:41298001 - * UMLS:C0006323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brunner_s_Gland] + * UMLS:C0006323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brunner_s_Gland ] * Wikipedia:Brunner's_glands * ncithesaurus:Brunner_s_Gland @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) and [submucosal gland](../../UBERON/48/UBERON_0011148.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001312.md b/md/UBERON/12/UBERON_0001312.md index 8f3657ffc5..f09083f741 100644 --- a/md/UBERON/12/UBERON_0001312.md +++ b/md/UBERON/12/UBERON_0001312.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001312 * *Label* = superior vesical artery - * *Definition* = The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vesical_artery] + * *Definition* = The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vesical_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * arteria vesicalis superior - * arteriae vesicales superiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vesical_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae vesicales superiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vesical_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18839 * MA:0002080 * SCTID:113268007 - * UMLS:C0226376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Vesical_Artery] + * UMLS:C0226376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Vesical_Artery ] * Wikipedia:Superior_vesical_artery * http://upload.wikimedia.org/wikipedia/commons/2/20/Internal_iliac_branches.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Internal_iliac_branches.PNG/200px-Internal_iliac_branches.PNG @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001412.md b/md/UBERON/12/UBERON_0001412.md index eeb1e8087b..8a61b43f88 100644 --- a/md/UBERON/12/UBERON_0001412.md +++ b/md/UBERON/12/UBERON_0001412.md @@ -7,7 +7,7 @@ ## Synonyms - * proximal palmar digital vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_digital_veins] + * proximal palmar digital vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_digital_veins ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001512.md b/md/UBERON/12/UBERON_0001512.md index 3233808c18..00d7ce3ed4 100644 --- a/md/UBERON/12/UBERON_0001512.md +++ b/md/UBERON/12/UBERON_0001512.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001512 * *Label* = skin of ankle - * *Definition* = A zone of skin that is part of an ankle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of an ankle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * ankle skin - * ankle zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tarsal region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * zone of skin of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ankle zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tarsal region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * zone of skin of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:37831 * MA:0000641 * SCTID:181560000 - * UMLS:C0222286 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ankle_Skin] + * UMLS:C0222286 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ankle_Skin ] * ncithesaurus:Ankle_Skin ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001612.md b/md/UBERON/12/UBERON_0001612.md index 93c0b266e8..b1e04658da 100644 --- a/md/UBERON/12/UBERON_0001612.md +++ b/md/UBERON/12/UBERON_0001612.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001612 * *Label* = facial artery - * *Definition* = The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_artery] + * *Definition* = The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria maxillaris externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria maxillaris externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * external maxillary artery ## Cross-references @@ -18,7 +18,7 @@ * MA:0001950 * OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA * SCTID:181328007 - * UMLS:C0226109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Artery] + * UMLS:C0226109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Artery ] * Wikipedia:Facial_artery * http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001712.md b/md/UBERON/12/UBERON_0001712.md index 60dd5c51ef..2eab79eb39 100644 --- a/md/UBERON/12/UBERON_0001712.md +++ b/md/UBERON/12/UBERON_0001712.md @@ -6,7 +6,7 @@ ## Synonyms - * palpebra superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54439[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palpebra superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54439, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * superior eyelid ## Cross-references @@ -18,7 +18,7 @@ * MA:0001267 * OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA * SCTID:244499008 - * UMLS:C0585636 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Eyelid] + * UMLS:C0585636 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Eyelid ] * VHOG:0000389 * http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg * ncithesaurus:Upper_Eyelid @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001812.md b/md/UBERON/12/UBERON_0001812.md index b56ff76470..eb6d869bf6 100644 --- a/md/UBERON/12/UBERON_0001812.md +++ b/md/UBERON/12/UBERON_0001812.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001812 * *Label* = palpebral conjunctiva - * *Definition* = The part of the conjunctiva, a thin transparent mucous membrane, that covers the posterior surface of the eyelids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Palpebral_Conjunctiva] + * *Definition* = The part of the conjunctiva, a thin transparent mucous membrane, that covers the posterior surface of the eyelids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Palpebral_Conjunctiva ] * *Comment* = lines the eyeballs ## Synonyms - * tarsal conjunctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conjunctiva] + * tarsal conjunctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conjunctiva ] * tunica conjunctiva palpebrum * eyelid conjunctiva @@ -17,7 +17,7 @@ * FMA:59025 * MA:0001265 * SCTID:280666005 - * UMLS:C0229274 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palpebral_Conjunctiva] + * UMLS:C0229274 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palpebral_Conjunctiva ] * ncithesaurus:Palpebral_Conjunctiva ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0001912.md b/md/UBERON/12/UBERON_0001912.md index bf77e3bd2a..af7d63f4bb 100644 --- a/md/UBERON/12/UBERON_0001912.md +++ b/md/UBERON/12/UBERON_0001912.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001912 * *Label* = lobule of lactiferous gland - * *Definition* = Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62090] + * *Definition* = Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62090 ] * *Comment* = TODO - ensure correct terminology for lobes/lobules. FMA uses lobule for core term, but also has 'set of mammary gland lobes'. ISBN10:0123813611 states no separate lobes in mouse ## Synonyms @@ -15,11 +15,11 @@ * lobule of mammary gland * mammary acinus * mammary gland lobule - * breast lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004718] - * lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004718] - * lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004718] - * lobi glandulae mammariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004718] - * lobus glandulae mammariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004718] + * breast lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004718 ] + * lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004718 ] + * lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004718 ] + * lobi glandulae mammariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004718 ] + * lobus glandulae mammariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004718 ] ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002012.md b/md/UBERON/12/UBERON_0002012.md index 713d905754..d05ffb6baf 100644 --- a/md/UBERON/12/UBERON_0002012.md +++ b/md/UBERON/12/UBERON_0002012.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002012 * *Label* = pulmonary artery - * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_artery] + * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_artery ] ## Synonyms * pulmonary arterial tree * pulmonary arterial tree organ part - * arteria pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * truncus pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * truncus pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A07.231.114.715 * OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA * SCTID:181380003 - * UMLS:C0034052 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pulmonary_Artery] + * UMLS:C0034052 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pulmonary_Artery ] * VHOG:0000982 * Wikipedia:Pulmonary_artery * XAO:0004162 @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary vascular system](../../UBERON/86/UBERON_0008886.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two arteries, leaving from the heart, the left one supplying the left lung and the right one supplying the right lung. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002112.md b/md/UBERON/12/UBERON_0002112.md index 7c1b407443..cdc45bb5a4 100644 --- a/md/UBERON/12/UBERON_0002112.md +++ b/md/UBERON/12/UBERON_0002112.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002112 * *Label* = smooth muscle of esophagus - * *Definition* = A portion of smooth muscle tissue that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * esophageal smooth muscle - * esophagus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * esophagus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * esophagus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * esophagus smooth muscle - * esophagus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * oesophagus smooth muscle ## Cross-references @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002212.md b/md/UBERON/12/UBERON_0002212.md index f5709f692d..16024e3a45 100644 --- a/md/UBERON/12/UBERON_0002212.md +++ b/md/UBERON/12/UBERON_0002212.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002212 * *Label* = macula of saccule of membranous labyrinth - * *Definition* = The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_of_saccule] + * *Definition* = The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_of_saccule ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * macula of membranous labyrinth saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * macula of membranous labyrinth saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * macula of saccule - * macula of sacculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * macula saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007000] - * macula sacculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74944[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * membranous labyrinth saccule macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccular macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007000] + * macula of sacculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * macula saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007000 ] + * macula sacculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74944, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * membranous labyrinth saccule macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccular macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007000 ] * saccular macula of membranous labyrinth - * saccule macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccule of membranous labyrinth macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sacculus (labyrinthus vestibularis) macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * macula sacculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_of_saccule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * saccule macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccule of membranous labyrinth macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sacculus (labyrinthus vestibularis) macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * macula sacculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_of_saccule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * saccular maculs ## Cross-references @@ -28,7 +28,7 @@ * MA:0001201 * SCTID:362572004 * TAO:0007000 - * UMLS:C0229468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Macula_of_Saccule] + * UMLS:C0229468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Macula_of_Saccule ] * Wikipedia:Macula_of_saccule * XAO:0004136 * ZFA:0007000 @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula](../../UBERON/54/UBERON_0000054.md) and [part_of](../../BFO/50/BFO_0000050.md) some [saccule of membranous labyrinth](../../UBERON/54/UBERON_0001854.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002412.md b/md/UBERON/12/UBERON_0002412.md index 9c939e5904..7a9bf037e5 100644 --- a/md/UBERON/12/UBERON_0002412.md +++ b/md/UBERON/12/UBERON_0002412.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002412 * *Label* = vertebra - * *Definition* = Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebra[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebra, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear // note we follow FMA in making this an irregular bone - however vertebra have 'epiphyses' which are currently classified as belonging to long bones ## Synonyms * vertebra bone - * vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -22,7 +22,7 @@ * OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA * SCTID:181817002 * TAO:0001189 - * UMLS:C0549207 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebra] + * UMLS:C0549207 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebra ] * VHOG:0001143 * Wikipedia:Vertebra * XAO:0004019 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [vertebra endochondral element](../../UBERON/05/UBERON_0015005.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002512.md b/md/UBERON/12/UBERON_0002512.md index e83d54cfeb..ac7af82f5c 100644 --- a/md/UBERON/12/UBERON_0002512.md +++ b/md/UBERON/12/UBERON_0002512.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002512 * *Label* = corpus luteum - * *Definition* = a transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:20959416[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_luteum] + * *Definition* = a transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:20959416, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_luteum ] * *Comment* = Taxon notes: maintains the endometrium in mammals[WP]. A corpus luteum is known in hagfish (100), Squalus (101), and salamander (100) but not lamprey (102). There are no data for Branchiostoma and Ciona, and given that they are multiple spawners, there is no a priori reason to conclude that they lack a corpus luteum[PMID:20959416] ## Synonyms - * corpora lutea [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpora lutea [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * corpus luteum of ovary - * luteal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000292] + * luteal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000292 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002834 * MESH:A05.360.319.114.630.278 * SCTID:257943001 - * UMLS:C0010092 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpus_Luteum] + * UMLS:C0010092 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpus_Luteum ] * Wikipedia:Corpus_luteum * http://upload.wikimedia.org/wikipedia/commons/5/57/Folliclesinovary.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Folliclesinovary.jpg/200px-Folliclesinovary.jpg @@ -51,8 +51,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7762 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002612.md b/md/UBERON/12/UBERON_0002612.md index bb45dc3561..8c27c9ed3a 100644 --- a/md/UBERON/12/UBERON_0002612.md +++ b/md/UBERON/12/UBERON_0002612.md @@ -6,16 +6,16 @@ ## Synonyms - * sulcus orbitalis transversus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1155] - * tos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1155[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus orbitalis transversus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1155 ] + * tos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1155, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:tos * FMA:83771 * NIF_GrossAnatomy:birnlex_1155 - * NeuroNames:80 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1155] - * UMLS:C0262349 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1155] + * NeuroNames:80 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1155 ] + * UMLS:C0262349 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1155 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002712.md b/md/UBERON/12/UBERON_0002712.md index 57d6eb7b7e..f720e40af2 100644 --- a/md/UBERON/12/UBERON_0002712.md +++ b/md/UBERON/12/UBERON_0002712.md @@ -6,11 +6,11 @@ ## Synonyms - * premammillary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62348] - * PMm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei premamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus premamillaris hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * premamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418] + * premammillary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62348 ] + * PMm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei premamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus premamillaris hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * premamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418 ] ## Cross-references @@ -18,8 +18,8 @@ * BAMS:PMm * FMA:62348 * NIF_GrossAnatomy:birnlex_1473 - * NeuroNames:418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1473] - * UMLS:C0262317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1473] + * NeuroNames:418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1473 ] + * UMLS:C0262317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1473 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002812.md b/md/UBERON/12/UBERON_0002812.md index 19b563629d..35885e5f58 100644 --- a/md/UBERON/12/UBERON_0002812.md +++ b/md/UBERON/12/UBERON_0002812.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002812 * *Label* = left cerebral hemisphere - * *Definition* = A cerebral hemisphere that is in the left side of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cerebral hemisphere that is in the left side of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1795] + * left hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1795 ] ## Cross-references * FMA:61819 * NIF_GrossAnatomy:birnlex_1795 * SCTID:362323007 - * UMLS:C0228176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Cerebral_Hemisphere] + * UMLS:C0228176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Cerebral_Hemisphere ] * ncithesaurus:Left_Cerebral_Hemisphere ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0002912.md b/md/UBERON/12/UBERON_0002912.md index 0e4ca50e73..57577ce67e 100644 --- a/md/UBERON/12/UBERON_0002912.md +++ b/md/UBERON/12/UBERON_0002912.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002912 * *Label* = marginal sulcus - * *Definition* = The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Marginal_sulcus] + * *Definition* = The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Marginal_sulcus ] ## Synonyms - * marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83773] - * marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83773] - * ramus marginalis sulci cingulati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4030] - * ramus marginalis sulci cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83773[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ms [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4030[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medullary substance of frontal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ms] - * pars marginalis sulci cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:98[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus marginalis; sulcus marginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Marginal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83773 ] + * marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83773 ] + * ramus marginalis sulci cingulati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4030 ] + * ramus marginalis sulci cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83773, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ms [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4030, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medullary substance of frontal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ms ] + * pars marginalis sulci cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:98, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus marginalis; sulcus marginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Marginal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ms * FMA:83773 * NIF_GrossAnatomy:birnlex_4030 - * NeuroNames:98 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4030] + * NeuroNames:98 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4030 ] * SCTID:279351001 - * UMLS:C0259792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4030] + * UMLS:C0259792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4030 ] * Wikipedia:Marginal_sulcus * http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray727_marginal_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray727_marginal_sulcus.svg/200px-Gray727_marginal_sulcus.svg.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003012.md b/md/UBERON/12/UBERON_0003012.md index facbe2f203..4ceedea482 100644 --- a/md/UBERON/12/UBERON_0003012.md +++ b/md/UBERON/12/UBERON_0003012.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003012 * *Label* = flocculonodular lobe - * *Definition* = The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flocculonodular_lobe] + * *Definition* = The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flocculonodular_lobe ] ## Synonyms - * cerebellum flocculonodular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002965] - * flocculonodular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72253] - * flocculonodular lobe of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72253] - * lobus flocculonodularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72253[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior lobe-2 of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72253] + * cerebellum flocculonodular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002965 ] + * flocculonodular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72253 ] + * flocculonodular lobe of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72253 ] + * lobus flocculonodularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72253, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior lobe-2 of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72253 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003112.md b/md/UBERON/12/UBERON_0003112.md index da3cfc0be1..0bf6779f14 100644 --- a/md/UBERON/12/UBERON_0003112.md +++ b/md/UBERON/12/UBERON_0003112.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003112 * *Label* = olfactory region - * *Definition* = Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000351] + * *Definition* = Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000351 ] ## Synonyms - * ethmoid region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000351] + * ethmoid region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000351 ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is located in the anterior region of the neurocranium and provides structural support for the olfactory organs.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003212.md b/md/UBERON/12/UBERON_0003212.md index cf03c3241e..3eb2d36a86 100644 --- a/md/UBERON/12/UBERON_0003212.md +++ b/md/UBERON/12/UBERON_0003212.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003212 * *Label* = gustatory organ - * *Definition* = Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBC:auto_generated_definition] + * *Definition* = Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBC:auto_generated_definition ] ## Synonyms - * gustatory organ system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gustatory system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of gustatory organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of gustatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of taste system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gustatory organ system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gustatory system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of gustatory organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of gustatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of taste system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * taste organ - * taste system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * taste system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable of part of](../../RO/16/RO_0002216.md) some [detection of chemical stimulus involved in sensory perception of taste](../../GO/12/GO_0050912.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003312.md b/md/UBERON/12/UBERON_0003312.md index b5fa63d776..170c96f33f 100644 --- a/md/UBERON/12/UBERON_0003312.md +++ b/md/UBERON/12/UBERON_0003312.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003312 * *Label* = mesenchyme of testis - * *Definition* = Mesenchyme that is part of a testis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a testis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * testis mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * testis mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003412.md b/md/UBERON/12/UBERON_0003412.md index 61e2840488..a3eab3cef3 100644 --- a/md/UBERON/12/UBERON_0003412.md +++ b/md/UBERON/12/UBERON_0003412.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003412 * *Label* = pelvic appendage bud mesenchyme - * *Definition* = Mesenchyme that is part of a pelvic appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pelvic appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * leg mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower limb bud mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001035] - * mesoderm pelvic fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001386[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pelvic fin bud mesenchyme [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * leg mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower limb bud mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001035 ] + * mesoderm pelvic fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001386, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pelvic fin bud mesenchyme [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage bud](../../UBERON/20/UBERON_0005420.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesoderm part of pelvic fin bud.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003512.md b/md/UBERON/12/UBERON_0003512.md index d927bbc2ab..6ff0586553 100644 --- a/md/UBERON/12/UBERON_0003512.md +++ b/md/UBERON/12/UBERON_0003512.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003512 * *Label* = lung blood vessel - * *Definition* = A blood vessel that is part of a lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003712.md b/md/UBERON/12/UBERON_0003712.md index 81b524367f..6fb9376b66 100644 --- a/md/UBERON/12/UBERON_0003712.md +++ b/md/UBERON/12/UBERON_0003712.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003712 * *Label* = cavernous sinus - * *Definition* = The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] + * *Definition* = The cavernous sinus (or lateral sellar compartment), within the human head, is a large collection of thin-walled veins creating a cavity bordered by the temporal bone of the skull and the sphenoid bone, lateral to the sella turcica. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] ## Synonyms - * cavernous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] - * cavernous sinus syndrome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] - * cavernous sinuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] - * cavernus sinus vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] - * parasellar syndrome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] - * sinus cavernosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cavernous_sinus] + * cavernous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] + * cavernous sinus syndrome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] + * cavernous sinuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] + * cavernus sinus vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] + * parasellar syndrome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] + * sinus cavernosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cavernous_sinus ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.231.908.224.334 * OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA * SCTID:244402005 - * UMLS:C0007473 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cavernous_Sinus] + * UMLS:C0007473 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cavernous_Sinus ] * Wikipedia:Cavernous_sinus * ncithesaurus:Cavernous_Sinus @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An irregularly shaped venous space in the dura mater at either side of the sphenoid bone[MESH:A07.231.908.224.334]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0003912.md b/md/UBERON/12/UBERON_0003912.md index 6d5c51ae38..bdc227a1e2 100644 --- a/md/UBERON/12/UBERON_0003912.md +++ b/md/UBERON/12/UBERON_0003912.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [chitin](../../CHEBI/29/CHEBI_17029.md) and [tooth-like structure](../../UBERON/13/UBERON_0003913.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004012.md b/md/UBERON/12/UBERON_0004012.md index 20c9f62386..77e0d64bc9 100644 --- a/md/UBERON/12/UBERON_0004012.md +++ b/md/UBERON/12/UBERON_0004012.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004012 * *Label* = golgi tendon organ - * *Definition* = the sensory organ in muscle that is involved in regulating muscle tension [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000999] + * *Definition* = the sensory organ in muscle that is involved in regulating muscle tension [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000999 ] ## Synonyms - * neurotendinous ending [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83608] - * neurotendinous organ of golgi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83608] + * neurotendinous ending [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83608 ] + * neurotendinous organ of golgi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83608 ] ## Cross-references * FMA:83608 - * UMLS:C0027929 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Golgi_Tendon_Organ] + * UMLS:C0027929 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Golgi_Tendon_Organ ] * ncithesaurus:Golgi_Tendon_Organ ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004112.md b/md/UBERON/12/UBERON_0004112.md index 66883c20e4..687ef961a6 100644 --- a/md/UBERON/12/UBERON_0004112.md +++ b/md/UBERON/12/UBERON_0004112.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004112 * *Label* = muscle of middle ear - * *Definition* = A muscle of head that is part of a tympanic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle of head that is part of a tympanic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = check tympanic cavity vs middle ear. the same for muscles? Consider merging with muscle of auditory ossicle. Extent in MA/NCITA is stapedius and tensor tympani ## Synonyms @@ -14,7 +14,7 @@ ## Cross-references * MA:0000256 - * UMLS:C1513769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_of_the_Tympanum] + * UMLS:C1513769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_of_the_Tympanum ] * ncithesaurus:Muscle_of_the_Tympanum ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [tympanic cavity](../../UBERON/14/UBERON_0004114.md) and [muscle of head](../../UBERON/76/UBERON_0002376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004212.md b/md/UBERON/12/UBERON_0004212.md index 1c041602ce..385e52effa 100644 --- a/md/UBERON/12/UBERON_0004212.md +++ b/md/UBERON/12/UBERON_0004212.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004212 * *Label* = glomerular capillary - * *Definition* = A capillary that is part of a renal glomerulus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capillary that is part of a renal glomerulus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood capillary of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * glomerular capillaries [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * glomerular capillary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002587] + * blood capillary of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * glomerular capillaries [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * glomerular capillary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002587 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002587 * SCTID:362049007 * TAO:0005284 - * UMLS:C0226356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glomerular_Capillary] + * UMLS:C0226356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glomerular_Capillary ] * ZFA:0005284 * ncithesaurus:Glomerular_Capillary @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capillary](../../UBERON/82/UBERON_0001982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004312.md b/md/UBERON/12/UBERON_0004312.md index 78f8566659..5c942f8aaa 100644 --- a/md/UBERON/12/UBERON_0004312.md +++ b/md/UBERON/12/UBERON_0004312.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004312 * *Label* = distal phalanx of manual digit 3 - * *Definition* = A distal phalanx that is part of a hand digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a hand digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd digit of hand distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 3rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 3rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23947] - * distal phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23947] - * distal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * equine 3rd phalanx of forelimb digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine forelimb distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * hand digit 3 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third distal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23947] - * third finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb coffin bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] - * forelimb medial claw of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * forelimb medial claw of ruminant hoof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * forelimb medial ungual phalanx of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * forelimb pedal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] + * 3rd digit of hand distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 3rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 3rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23947 ] + * distal phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23947 ] + * distal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * equine 3rd phalanx of forelimb digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine forelimb distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * hand digit 3 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third distal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23947 ] + * third finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb coffin bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] + * forelimb medial claw of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * forelimb medial claw of ruminant hoof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * forelimb medial ungual phalanx of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * forelimb pedal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004412.md b/md/UBERON/12/UBERON_0004412.md index 55d6377dcf..e6fbced4cb 100644 --- a/md/UBERON/12/UBERON_0004412.md +++ b/md/UBERON/12/UBERON_0004412.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004412 * *Label* = proximal epiphysis of femur - * *Definition* = A proximal epiphysis that is part of a femur [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a femur [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * proximal femoral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * capital femoral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * proximal femoral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * capital femoral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004512.md b/md/UBERON/12/UBERON_0004512.md index 1aa823f7c1..1b382e6dad 100644 --- a/md/UBERON/12/UBERON_0004512.md +++ b/md/UBERON/12/UBERON_0004512.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004512 * *Label* = skeletal muscle tissue of supraspinatus - * *Definition* = A portion of skeletal muscle tissue that is part of a supraspinatus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a supraspinatus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [supraspinatus muscle](../../UBERON/83/UBERON_0002383.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004612.md b/md/UBERON/12/UBERON_0004612.md index 77d9eb174f..d5e4dce99f 100644 --- a/md/UBERON/12/UBERON_0004612.md +++ b/md/UBERON/12/UBERON_0004612.md @@ -7,9 +7,9 @@ ## Synonyms - * C3 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12521] - * cervical vertebra 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001423] - * third cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12521] + * C3 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12521 ] + * cervical vertebra 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001423 ] + * third cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12521 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:12521 * MA:0001423 * SCTID:181823007 - * UMLS:C0459939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C3_Vertebra] + * UMLS:C0459939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C3_Vertebra ] * ncithesaurus:C3_Vertebra ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004812.md b/md/UBERON/12/UBERON_0004812.md index f2701d68c6..188c20419c 100644 --- a/md/UBERON/12/UBERON_0004812.md +++ b/md/UBERON/12/UBERON_0004812.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004812 * *Label* = male prepuce epithelium - * *Definition* = An epithelium that is part of a prepuce of penis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a prepuce of penis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: NCITA term may be sex-neutral ## Synonyms - * epithelial tissue of foreskin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of penile prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of prepuce of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of foreskin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of penile prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of prepuce of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foreskin epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foreskin epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * penile prepuce epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * penile prepuce epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prepuce epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001753] - * prepuce of penis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prepuce epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prepuce of penis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of foreskin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of penile prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of prepuce of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of foreskin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of penile prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of prepuce of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foreskin epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foreskin epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * penile prepuce epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * penile prepuce epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prepuce epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001753 ] + * prepuce of penis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prepuce epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prepuce of penis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:30638 * EMAPA:30655 * MA:0001753 - * UMLS:C1709639 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prepuce_Epithelium] + * UMLS:C1709639 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prepuce_Epithelium ] * ncithesaurus:Prepuce_Epithelium ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prepuce of penis](../../UBERON/32/UBERON_0001332.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0004912.md b/md/UBERON/12/UBERON_0004912.md index f819bdadea..69c2b13c9b 100644 --- a/md/UBERON/12/UBERON_0004912.md +++ b/md/UBERON/12/UBERON_0004912.md @@ -6,7 +6,7 @@ ## Synonyms - * hepatic diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16561] + * hepatic diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16561 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005012.md b/md/UBERON/12/UBERON_0005012.md index d162d3d019..536a56f22b 100644 --- a/md/UBERON/12/UBERON_0005012.md +++ b/md/UBERON/12/UBERON_0005012.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005012 * *Label* = mucosa of left uterine tube - * *Definition* = A mucosa that is part of a left uterine tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a left uterine tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left fallopian tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left fallopian tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left fallopian tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left fallopian tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left oviduct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left oviduct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left oviduct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left oviduct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left uterine tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left uterine tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left uterine tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left uterine tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of left fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of left oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left fallopian tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left fallopian tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left fallopian tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left fallopian tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left oviduct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left oviduct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left oviduct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left oviduct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left uterine tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left uterine tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left uterine tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left uterine tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of left fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of left oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left uterine tube](../../UBERON/03/UBERON_0001303.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005212.md b/md/UBERON/12/UBERON_0005212.md index 518e82f80c..f94222db64 100644 --- a/md/UBERON/12/UBERON_0005212.md +++ b/md/UBERON/12/UBERON_0005212.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005212 * *Label* = testis interstitial tissue - * *Definition* = The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A05.360.444.849] + * *Definition* = The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A05.360.444.849 ] ## Synonyms - * interstitium of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * interstitium of the testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18687] - * testis - interstitial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * testis interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * interstitium of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * interstitium of the testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18687 ] + * testis - interstitial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * testis interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005312.md b/md/UBERON/12/UBERON_0005312.md index e88f708be9..4070ad0e44 100644 --- a/md/UBERON/12/UBERON_0005312.md +++ b/md/UBERON/12/UBERON_0005312.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005312 * *Label* = primary ureteric bud - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060682] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060682 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005412.md b/md/UBERON/12/UBERON_0005412.md index 69e939ad0a..1da87643c5 100644 --- a/md/UBERON/12/UBERON_0005412.md +++ b/md/UBERON/12/UBERON_0005412.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005412 * *Label* = optic fissure - * *Definition* = Groove that is in the developing ventral optic cup and through which blood vessels pass to the enclosed mesenchyme[ZFA]. a ventral fissure in the developing optic cup through which blood vessels pass to the enclosed mesenchyme[Free online medical dictionary]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid_fissure[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001284[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/optic+fissure[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3083162&group_id=36855] + * *Definition* = Groove that is in the developing ventral optic cup and through which blood vessels pass to the enclosed mesenchyme[ZFA]. a ventral fissure in the developing optic cup through which blood vessels pass to the enclosed mesenchyme[Free online medical dictionary]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid_fissure, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001284, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/optic+fissure, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3083162&group_id=36855 ] * *Comment* = As the eye starts to develop, a gap opens on the underside of each eye bud. This gap provides a way for the developing eye to be nourished. This gap, called the optic fissure, has to close before the eye is fully developed. Coloboma is the incomplete closer of the optic fissure ## Synonyms - * choroid fissure - optic fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000655] - * optic fissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001284[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * optic stalk fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001319] - * choroid fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001305[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000474[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001284] + * choroid fissure - optic fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000655 ] + * optic fissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001284, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * optic stalk fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001319 ] + * choroid fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001305, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000474, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001284 ] ## Cross-references @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A break in the continuity of the optic cup where the two sides of the cup meet.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The folded arrangement of the vertebrate retina and RPE [retinal pigment epithelial] provides an evolutionary explanation for the occurrence of the choroid fissure, as proposed more than a century ago. Early in evolution, before the optic cup invaginated, the axons from retinal ganglion cells would simply have run over the surface of the structure. Hence, one can view the optic nerve as having acted rather like a rope in linking the retina to higher centres: the developing eye cup has simply wrapped around this 'rope', and the developing axons have thereby not needed to penetrate the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005612.md b/md/UBERON/12/UBERON_0005612.md index fdf5eb0014..3af123d146 100644 --- a/md/UBERON/12/UBERON_0005612.md +++ b/md/UBERON/12/UBERON_0005612.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005612 * *Label* = intercostal artery - * *Definition* = One of a group of arteries that supply the area between the ribs ('costae'), called the intercostal space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikiepdia:Intercostal_arteries] + * *Definition* = One of a group of arteries that supply the area between the ribs ('costae'), called the intercostal space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikiepdia:Intercostal_arteries ] * *Comment* = TODO - add children. Mouse has dorsal, ventral and upper; humans have anterior, posterior; teleost has segmental ## Synonyms @@ -16,7 +16,7 @@ * EMAPA:18753 * MA:0001981 * SCTID:281134007 - * UMLS:C0459917 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intercostal_Artery] + * UMLS:C0459917 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intercostal_Artery ] * ncithesaurus:Intercostal_Artery ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005712.md b/md/UBERON/12/UBERON_0005712.md index ca07792551..c2dd07bee4 100644 --- a/md/UBERON/12/UBERON_0005712.md +++ b/md/UBERON/12/UBERON_0005712.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005712 * *Label* = midgut duodenum mesentery - * *Definition* = A mesentery of duodenum that is part of a midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery of duodenum that is part of a midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery of duodenum](../../UBERON/97/UBERON_0003397.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0005912.md b/md/UBERON/12/UBERON_0005912.md index 36b645738c..91c75116b7 100644 --- a/md/UBERON/12/UBERON_0005912.md +++ b/md/UBERON/12/UBERON_0005912.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005912 * *Label* = transitional epithelium of major calyx - * *Definition* = An urothelium of ureter that is part of a mucosa of major calyx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An urothelium of ureter that is part of a mucosa of major calyx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * urothelium of major calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urothelium of major calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mucosa of major calyx](../../UBERON/07/UBERON_0005007.md) and [urothelium of ureter](../../UBERON/54/UBERON_0001254.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006012.md b/md/UBERON/12/UBERON_0006012.md index 2aeeec447b..d1144b4cbe 100644 --- a/md/UBERON/12/UBERON_0006012.md +++ b/md/UBERON/12/UBERON_0006012.md @@ -8,7 +8,7 @@ ## Synonyms * interdigit region - * interdigit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004670] + * interdigit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004670 ] ## Cross-references @@ -29,11 +29,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006212.md b/md/UBERON/12/UBERON_0006212.md index 66a56bc999..0136155205 100644 --- a/md/UBERON/12/UBERON_0006212.md +++ b/md/UBERON/12/UBERON_0006212.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006212 * *Label* = bulbo-ventricular groove - * *Definition* = depression at base of developing heart that contains a population of cardiomyocytes that migrate and contribute to the interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17064678] + * *Definition* = depression at base of developing heart that contains a population of cardiomyocytes that migrate and contribute to the interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17064678 ] ## Synonyms - * bulbo-ventricular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16693] - * bulboventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001405] - * ependymal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16693] - * ependymal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16693] - * interventricular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000195] + * bulbo-ventricular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16693 ] + * bulboventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001405 ] + * ependymal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16693 ] + * ependymal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16693 ] + * interventricular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000195 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006312.md b/md/UBERON/12/UBERON_0006312.md index e30a41c7a8..592e2da22f 100644 --- a/md/UBERON/12/UBERON_0006312.md +++ b/md/UBERON/12/UBERON_0006312.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006612.md b/md/UBERON/12/UBERON_0006612.md index 386287c967..5f924e9f3a 100644 --- a/md/UBERON/12/UBERON_0006612.md +++ b/md/UBERON/12/UBERON_0006612.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006612 * *Label* = shell - * *Definition* = A rigid covering that envelops an object. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seashell[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Shell] + * *Definition* = A rigid covering that envelops an object. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seashell, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Shell ] * *Comment* = Editor notes: may be obsoleted after integumental system overhaul ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006812.md b/md/UBERON/12/UBERON_0006812.md index 749724ad6f..a6aebd1f47 100644 --- a/md/UBERON/12/UBERON_0006812.md +++ b/md/UBERON/12/UBERON_0006812.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006812 * *Label* = mental foramen - * *Definition* = The mental foramen is one of two holes ('foramina') located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mental_foramen] + * *Definition* = The mental foramen is one of two holes ('foramina') located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mental_foramen ] ## Synonyms - * mental foramina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * foramen mentale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mental_foramen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen mentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mental_foramen] + * mental foramina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * foramen mentale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mental_foramen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen mentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mental_foramen ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0006912.md b/md/UBERON/12/UBERON_0006912.md index cb15051631..a7bcbfb3f9 100644 --- a/md/UBERON/12/UBERON_0006912.md +++ b/md/UBERON/12/UBERON_0006912.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006912 * *Label* = urinary bladder muscularis mucosa - * *Definition* = A muscularis mucosa that is part of a urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscularis mucosa of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscularis mucosa of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28619] + * muscularis mucosa of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscularis mucosa of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28619 ] ## Cross-references * EMAPA:28619 * MA:0002490 - * UMLS:C1511195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Muscularis_Mucosa] + * UMLS:C1511195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Muscularis_Mucosa ] * ncithesaurus:Bladder_Muscularis_Mucosa ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0007312.md b/md/UBERON/12/UBERON_0007312.md index 7077e42c56..a1a4c42481 100644 --- a/md/UBERON/12/UBERON_0007312.md +++ b/md/UBERON/12/UBERON_0007312.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007312 * *Label* = pudendal artery - * *Definition* = Either the internal or external pudendal arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_artery] + * *Definition* = Either the internal or external pudendal arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_artery ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0007412.md b/md/UBERON/12/UBERON_0007412.md index 88ca4fc0ea..b8802b84dc 100644 --- a/md/UBERON/12/UBERON_0007412.md +++ b/md/UBERON/12/UBERON_0007412.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007412 * *Label* = midbrain raphe nuclei - * *Definition* = Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1676] + * *Definition* = Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1676 ] * *Comment* = todo - check. note BTO class is placed here as it is placed in hindbrain ## Synonyms - * midbrain raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1676] - * midbrain raphe nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1676] - * nuclei raphes tegmenti mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77787[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe nuclei of tegmentum of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77787] - * set of raphe nuclei of tegmentum of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77787] - * raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003387] + * midbrain raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1676 ] + * midbrain raphe nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1676 ] + * nuclei raphes tegmenti mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77787, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe nuclei of tegmentum of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77787 ] + * set of raphe nuclei of tegmentum of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77787 ] + * raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003387 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0007612.md b/md/UBERON/12/UBERON_0007612.md index 1ce13ca97a..364dacf633 100644 --- a/md/UBERON/12/UBERON_0007612.md +++ b/md/UBERON/12/UBERON_0007612.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007612 * *Label* = extensor digitorum communis - * *Definition* = A muscle on the back of the forearm that extends the fingers and wrist. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001343[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_muscle] + * *Definition* = A muscle on the back of the forearm that extends the fingers and wrist. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001343, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_muscle ] ## Synonyms - * extensor digitorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38500] + * extensor digitorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38500 ] * extensor digitorum communis muscle * extensor communis - * musculus extensor digitorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus extensor digitorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0001343 * FMA:38500 * MA:0002293 - * UMLS:C1707982 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Digitorum_Communis] + * UMLS:C1707982 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Digitorum_Communis ] * Wikipedia:Extensor_digitorum_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e9/Extensor_digitorum_muscle.png * ncithesaurus:Extensor_Digitorum_Communis @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0007712.md b/md/UBERON/12/UBERON_0007712.md index 1bb1b05c3f..64924a9abe 100644 --- a/md/UBERON/12/UBERON_0007712.md +++ b/md/UBERON/12/UBERON_0007712.md @@ -6,16 +6,16 @@ ## Synonyms - * forth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2614] - * fourth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6324] - * fourth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * forth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2614 ] + * fourth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6324 ] + * fourth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references * EMAPA:25177 * FMA:6324 * NIF_GrossAnatomy:birnlex_2614 - * UMLS:C0501702 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2614] + * UMLS:C0501702 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2614 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0007812.md b/md/UBERON/12/UBERON_0007812.md index 4aa65ff65d..c1a90c1f5e 100644 --- a/md/UBERON/12/UBERON_0007812.md +++ b/md/UBERON/12/UBERON_0007812.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007812 * *Label* = post-anal tail - * *Definition* = a tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = a tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: present at some time in chordate life history (eg in Urochordates, present only in free-swimming larvae). Function: propellor locomotion (in some species) ## Synonyms * muscular postanal tail * postanal tail - * post-anal fin tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.oboibrary.org/obo/uberon/tracker/185[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001117] + * post-anal fin tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.oboibrary.org/obo/uberon/tracker/185, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001117 ] ## Cross-references @@ -19,7 +19,7 @@ * EHDAA2:0003109 * MA:0000008 * TAO:0001117 - * UMLS:C0039259 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tail] + * UMLS:C0039259 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tail ] * XAO:0003026 * ZFA:0001117 * ncithesaurus:Tail @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is the terminal, flexible posterior appendage of the organism.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0008612.md b/md/UBERON/12/UBERON_0008612.md index dbc81f87f4..76b6e73c20 100644 --- a/md/UBERON/12/UBERON_0008612.md +++ b/md/UBERON/12/UBERON_0008612.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008612 * *Label* = muscle of pelvic diaphragm - * *Definition* = The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider 'pelvic floor' and 'pelvic diaphragm' to be identical, with the 'diaphragm' consisting of only the levator ani and coccygeus, while the 'floor' also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor] + * *Definition* = The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider 'pelvic floor' and 'pelvic diaphragm' to be identical, with the 'diaphragm' consisting of only the levator ani and coccygeus, while the 'floor' also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor ] ## Synonyms - * muscle of pelvic floor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64856] - * pelvic diaphragm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64856] - * diaphragm of the pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor] - * diaphragma pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pelvic diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor] - * pelvic floor muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor] - * pelvic muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_floor] + * muscle of pelvic floor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64856 ] + * pelvic diaphragm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64856 ] + * diaphragm of the pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor ] + * diaphragma pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pelvic diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor ] + * pelvic floor muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor ] + * pelvic muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_floor ] ## Cross-references * FMA:64856 * SCTID:367748001 - * UMLS:C0932441 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pelvic_Floor_Muscle] + * UMLS:C0932441 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pelvic_Floor_Muscle ] * Wikipedia:Pelvic_floor * http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png * ncithesaurus:Pelvic_Floor_Muscle @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0008712.md b/md/UBERON/12/UBERON_0008712.md index 03b2e4a3c2..e378570c21 100644 --- a/md/UBERON/12/UBERON_0008712.md +++ b/md/UBERON/12/UBERON_0008712.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008712 * *Label* = stylohyoid muscle - * *Definition* = The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle] + * *Definition* = The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle ] ## Synonyms - * musculus stylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle] - * stylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle] - * stylohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle] - * stylohyoideus muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_muscle] + * musculus stylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle ] + * stylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle ] + * stylohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle ] + * stylohyoideus muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_muscle ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0008812.md b/md/UBERON/12/UBERON_0008812.md index a694fa3050..8a4c6e0d53 100644 --- a/md/UBERON/12/UBERON_0008812.md +++ b/md/UBERON/12/UBERON_0008812.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008812 * *Label* = hemipenis - * *Definition* = one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemipenis] + * *Definition* = one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemipenis ] ## Synonyms - * hemipenes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemipenis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hemipenes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemipenis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008812 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0009612.md b/md/UBERON/12/UBERON_0009612.md index 487e6c6556..0c03168e65 100644 --- a/md/UBERON/12/UBERON_0009612.md +++ b/md/UBERON/12/UBERON_0009612.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0009712.md b/md/UBERON/12/UBERON_0009712.md index f0852aa541..2adfe70cbc 100644 --- a/md/UBERON/12/UBERON_0009712.md +++ b/md/UBERON/12/UBERON_0009712.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009712 * *Label* = endocardium of right ventricle - * *Definition* = Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9536] + * *Definition* = Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9536 ] ## Synonyms - * right ventricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001235] - * right ventricular endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9536] - * endocardial lining of right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17341] - * right ventricle endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001235] + * right ventricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001235 ] + * right ventricular endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9536 ] + * endocardial lining of right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17341 ] + * right ventricle endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001235 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium of ventricle](../../UBERON/81/UBERON_0001081.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0009912.md b/md/UBERON/12/UBERON_0009912.md index ff7129d51b..60a3269564 100644 --- a/md/UBERON/12/UBERON_0009912.md +++ b/md/UBERON/12/UBERON_0009912.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010012.md b/md/UBERON/12/UBERON_0010012.md index 6e409ab006..a139311e92 100644 --- a/md/UBERON/12/UBERON_0010012.md +++ b/md/UBERON/12/UBERON_0010012.md @@ -8,7 +8,7 @@ * maxillary beak * rostrum maxillare - * upper mandible [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * upper mandible [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010212.md b/md/UBERON/12/UBERON_0010212.md index 0500476553..44d1a06d27 100644 --- a/md/UBERON/12/UBERON_0010212.md +++ b/md/UBERON/12/UBERON_0010212.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010212 * *Label* = laryngeal apparatus - * *Definition* = Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000267] + * *Definition* = Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000267 ] * *Comment* = Check this. See also UBERONREF:0000008 ## Synonyms - * laryngeal cartilage system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000904] + * laryngeal cartilage system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000904 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010312.md b/md/UBERON/12/UBERON_0010312.md index 3e17905238..5706f0dd66 100644 --- a/md/UBERON/12/UBERON_0010312.md +++ b/md/UBERON/12/UBERON_0010312.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010312 * *Label* = immature eye - * *Definition* = Developing anatomical structure that develops into the eyeball and associated structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001678] + * *Definition* = Developing anatomical structure that develops into the eyeball and associated structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001678 ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) and [has developmental contribution from](../../RO/54/RO_0002254.md) some [eye primordium](../../UBERON/71/UBERON_0003071.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure that consists of the structures that develop into the retina and lens.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010412.md b/md/UBERON/12/UBERON_0010412.md index 3751fe789f..512460b4f0 100644 --- a/md/UBERON/12/UBERON_0010412.md +++ b/md/UBERON/12/UBERON_0010412.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010412 * *Label* = epididymal fat pad - * *Definition* = encapsulated adipose tissue associated with the epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:rbabiuk] + * *Definition* = encapsulated adipose tissue associated with the epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:rbabiuk ] ## Synonyms - * periepididymal fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009288] + * periepididymal fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009288 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010512.md b/md/UBERON/12/UBERON_0010512.md index 8794a88839..4eeac47ba2 100644 --- a/md/UBERON/12/UBERON_0010512.md +++ b/md/UBERON/12/UBERON_0010512.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010512 * *Label* = strand of guard hair - * *Definition* = A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation. It protects the underfur from outside factors, such as rain, and is thus often water-repellent. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Guard_hair] + * *Definition* = A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation. It protects the underfur from outside factors, such as rain, and is thus often water-repellent. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Guard_hair ] ## Synonyms - * guard hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001896] + * guard hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001896 ] * guardhair ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010712.md b/md/UBERON/12/UBERON_0010712.md index 2c96e3e938..a430b1e438 100644 --- a/md/UBERON/12/UBERON_0010712.md +++ b/md/UBERON/12/UBERON_0010712.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010712 * *Label* = limb skeleton subdivision - * *Definition* = Skeletal subdivision that is a segment of the limb skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005018[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * *Definition* = Skeletal subdivision that is a segment of the limb skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005018, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * *Comment* = Editor notes - note the distinction between this and skeleton of limb ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) and [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0010912.md b/md/UBERON/12/UBERON_0010912.md index 17bb17825e..07e43627f1 100644 --- a/md/UBERON/12/UBERON_0010912.md +++ b/md/UBERON/12/UBERON_0010912.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010912 * *Label* = subdivision of skeleton - * *Definition* = Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * skeletal subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000042] - * subdivision of skeleton (in vivo) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23879] + * skeletal subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000042 ] + * subdivision of skeleton (in vivo) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23879 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0011012.md b/md/UBERON/12/UBERON_0011012.md index e8252bd313..9e4dcf729c 100644 --- a/md/UBERON/12/UBERON_0011012.md +++ b/md/UBERON/12/UBERON_0011012.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011012 * *Label* = flexor pollicis brevis muscle - * *Definition* = The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_brevis_muscle] + * *Definition* = The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_brevis_muscle ] ## Synonyms - * flexor pollicis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37378] - * musculus flexor pollicis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_brevis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * flexor pollicis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37378 ] + * musculus flexor pollicis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_brevis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0011112.md b/md/UBERON/12/UBERON_0011112.md index 44825b8744..7f759a7e11 100644 --- a/md/UBERON/12/UBERON_0011112.md +++ b/md/UBERON/12/UBERON_0011112.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011112 * *Label* = tibiofibular joint - * *Definition* = A joint that connects the tibia and the fibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibiofibular_joint[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A joint that connects the tibia and the fibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibiofibular_joint, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: we include location as part of the logical definition to prevent accidental classification of ankle joints as tibiofibular joints ## Synonyms @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [fibula](../../UBERON/46/UBERON_0001446.md) and [connects](../../ts/core#connects.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0011312.md b/md/UBERON/12/UBERON_0011312.md index 685c0c754e..6fb8b27721 100644 --- a/md/UBERON/12/UBERON_0011312.md +++ b/md/UBERON/12/UBERON_0011312.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0011512.md b/md/UBERON/12/UBERON_0011512.md index fac542aff5..c126cf7999 100644 --- a/md/UBERON/12/UBERON_0011512.md +++ b/md/UBERON/12/UBERON_0011512.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011512 * *Label* = puborectalis muscle - * *Definition* = The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Puborectalis_muscle] + * *Definition* = The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Puborectalis_muscle ] ## Synonyms - * puborectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19091] - * puborectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Puborectalis_muscle] - * sphincter recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Puborectalis_muscle] + * puborectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19091 ] + * puborectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Puborectalis_muscle ] + * sphincter recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Puborectalis_muscle ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0011612.md b/md/UBERON/12/UBERON_0011612.md index ead6b3a856..d1e88d6b2e 100644 --- a/md/UBERON/12/UBERON_0011612.md +++ b/md/UBERON/12/UBERON_0011612.md @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch cartilage that is bilaterally paired and articulates posteriorly with the ceratohyal cartilage.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0012112.md b/md/UBERON/12/UBERON_0012112.md index 3bd030d850..c9520195f0 100644 --- a/md/UBERON/12/UBERON_0012112.md +++ b/md/UBERON/12/UBERON_0012112.md @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Body substance, which consists of food admixed with saliva contained in the oral cavity, pharynx or esophagus[FMA]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0012312.md b/md/UBERON/12/UBERON_0012312.md index fe95b0da07..bce50444f8 100644 --- a/md/UBERON/12/UBERON_0012312.md +++ b/md/UBERON/12/UBERON_0012312.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013112.md b/md/UBERON/12/UBERON_0013112.md index ea56a35f31..b0b0403af8 100644 --- a/md/UBERON/12/UBERON_0013112.md +++ b/md/UBERON/12/UBERON_0013112.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013112 * *Label* = viper venom - * *Definition* = Venoms from snakes of the viperid family. They tend to be less toxic than elapid or hydrophid venoms and act mainly on the vascular system, interfering with coagulation and capillary membrane integrity and are highly cytotoxic. They contain large amounts of several enzymes, other factors, and some toxins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.960] + * *Definition* = Venoms from snakes of the viperid family. They tend to be less toxic than elapid or hydrophid venoms and act mainly on the vascular system, interfering with coagulation and capillary membrane integrity and are highly cytotoxic. They contain large amounts of several enzymes, other factors, and some toxins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.960 ] ## Synonyms - * cerastes venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.960] - * egyptian sand viper venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.960] - * viper venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.960] - * viperotoxin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850.960] + * cerastes venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.960 ] + * egyptian sand viper venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.960 ] + * viper venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.960 ] + * viperotoxin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850.960 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013212.md b/md/UBERON/12/UBERON_0013212.md index 34788db6f6..e09f3c232a 100644 --- a/md/UBERON/12/UBERON_0013212.md +++ b/md/UBERON/12/UBERON_0013212.md @@ -7,7 +7,7 @@ ## Synonyms * anal gland secretion - * hyena butter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyena_butter[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hyena butter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyena_butter, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * musk ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [gland of anal sac](../../UBERON/53/UBERON_0011253.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013212 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013412.md b/md/UBERON/12/UBERON_0013412.md index 5e9c6331c5..e93b6cd241 100644 --- a/md/UBERON/12/UBERON_0013412.md +++ b/md/UBERON/12/UBERON_0013412.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013412 * *Label* = crotaphion - * *Definition* = The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crotaphion] + * *Definition* = The crotaphion refers to two points on the skull at the tips of the greater wing of sphenoid bone. It is near the pterion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crotaphion ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013412 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013512.md b/md/UBERON/12/UBERON_0013512.md index d5eb87c4c4..3b09eba031 100644 --- a/md/UBERON/12/UBERON_0013512.md +++ b/md/UBERON/12/UBERON_0013512.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013512 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013612.md b/md/UBERON/12/UBERON_0013612.md index 25b32f722a..2ff1bdcb3e 100644 --- a/md/UBERON/12/UBERON_0013612.md +++ b/md/UBERON/12/UBERON_0013612.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013612 * *Label* = tooth cingulid - * *Definition* = A ridge that girdles the base of a lower molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/cingulid] + * *Definition* = A ridge that girdles the base of a lower molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/cingulid ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0013712.md b/md/UBERON/12/UBERON_0013712.md index eb84e20fe7..a82a8725f4 100644 --- a/md/UBERON/12/UBERON_0013712.md +++ b/md/UBERON/12/UBERON_0013712.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0014612.md b/md/UBERON/12/UBERON_0014612.md index 4401f8e511..37432611ca 100644 --- a/md/UBERON/12/UBERON_0014612.md +++ b/md/UBERON/12/UBERON_0014612.md @@ -6,15 +6,15 @@ ## Synonyms - * substantia gelatinosa of thoracic spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1432[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * substantia gelatinosa of thoracic spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1432] + * substantia gelatinosa of thoracic spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1432, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * substantia gelatinosa of thoracic spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1432 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1432 * SCTID:367878004 - * UMLS:C0228630 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1432] - * UMLS:C1288554 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1432] + * UMLS:C0228630 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1432 ] + * UMLS:C1288554 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1432 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord dorsal horn](../../UBERON/09/UBERON_0014609.md) and [substantia gelatinosa](../../UBERON/81/UBERON_0002181.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014612 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0014712.md b/md/UBERON/12/UBERON_0014712.md index 8dec5febe0..598ee4e3a6 100644 --- a/md/UBERON/12/UBERON_0014712.md +++ b/md/UBERON/12/UBERON_0014712.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carapacial ridge](../../UBERON/10/UBERON_0014710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014712 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0014912.md b/md/UBERON/12/UBERON_0014912.md index cdca914c8f..52b2f34806 100644 --- a/md/UBERON/12/UBERON_0014912.md +++ b/md/UBERON/12/UBERON_0014912.md @@ -6,8 +6,8 @@ ## Synonyms - * eminentia thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007010] - * EMT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * eminentia thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007010 ] + * EMT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development[UBERON:2007010, ZFIN:curator]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014912 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0015012.md b/md/UBERON/12/UBERON_0015012.md index cf78179507..83b5b5e1b2 100644 --- a/md/UBERON/12/UBERON_0015012.md +++ b/md/UBERON/12/UBERON_0015012.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015012 * *Label* = tarsometatarsus endochondral element - * *Definition* = A tarsometatarsus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A tarsometatarsus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * tarsometatarsus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * tarsometatarsus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * tarsometatarsus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * tarsometatarsus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [tarsometatarsus cartilage element](../../UBERON/00/UBERON_0010900.md)or[tarsometatarsus pre-cartilage condensation](../../UBERON/01/UBERON_0010901.md)or[tarsometatarsus](../../UBERON/95/UBERON_0008195.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_0015112.md b/md/UBERON/12/UBERON_0015112.md index 3517d9a275..b1c577364d 100644 --- a/md/UBERON/12/UBERON_0015112.md +++ b/md/UBERON/12/UBERON_0015112.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone 4 endochondral element](../../UBERON/11/UBERON_0015111.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015112 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_1000012.md b/md/UBERON/12/UBERON_1000012.md index 9381478dec..f885a7238f 100644 --- a/md/UBERON/12/UBERON_1000012.md +++ b/md/UBERON/12/UBERON_1000012.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000012 * *Label* = nose anterior margin - * *Definition* = Subdivision of the head consisting of the area along the front edge of the external nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the area along the front edge of the external nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000012 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2000212.md b/md/UBERON/12/UBERON_2000212.md index 1529ddcb4c..8c3f435c72 100644 --- a/md/UBERON/12/UBERON_2000212.md +++ b/md/UBERON/12/UBERON_2000212.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2000412.md b/md/UBERON/12/UBERON_2000412.md index 6dc8f4b7cb..474b024aba 100644 --- a/md/UBERON/12/UBERON_2000412.md +++ b/md/UBERON/12/UBERON_2000412.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior semicircular canal primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * posterior semicircular canal primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2000512.md b/md/UBERON/12/UBERON_2000512.md index d2aa98b460..293760898d 100644 --- a/md/UBERON/12/UBERON_2000512.md +++ b/md/UBERON/12/UBERON_2000512.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2000712.md b/md/UBERON/12/UBERON_2000712.md index b7c471bb72..4ca6f2ff6f 100644 --- a/md/UBERON/12/UBERON_2000712.md +++ b/md/UBERON/12/UBERON_2000712.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000712 * *Label* = I-YSL - * *Definition* = The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * internal yolk syncytial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * internal yolk syncytial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2000912.md b/md/UBERON/12/UBERON_2000912.md index 5e17c910a4..fe5219002d 100644 --- a/md/UBERON/12/UBERON_2000912.md +++ b/md/UBERON/12/UBERON_2000912.md @@ -6,7 +6,7 @@ ## Synonyms - * mesenchyme median fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000912] + * mesenchyme median fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000912 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001012.md b/md/UBERON/12/UBERON_2001012.md index 3efd2025b9..f7746f5d23 100644 --- a/md/UBERON/12/UBERON_2001012.md +++ b/md/UBERON/12/UBERON_2001012.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001012 * *Label* = epaxial region somite 16 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001312.md b/md/UBERON/12/UBERON_2001312.md index 2e6ed05c0f..301a3569d1 100644 --- a/md/UBERON/12/UBERON_2001312.md +++ b/md/UBERON/12/UBERON_2001312.md @@ -6,7 +6,7 @@ ## Synonyms - * anterodorsal lateral line ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001312] + * anterodorsal lateral line ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001312 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001312 + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001412.md b/md/UBERON/12/UBERON_2001412.md index 25fbf87190..dbebcd6c1a 100644 --- a/md/UBERON/12/UBERON_2001412.md +++ b/md/UBERON/12/UBERON_2001412.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001412 * *Label* = epiotic - * *Definition* = Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * epioccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001412] - * epioccipitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * epioccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001412 ] + * epioccipitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2000659 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001612.md b/md/UBERON/12/UBERON_2001612.md index 9e8e62153c..190c047bc7 100644 --- a/md/UBERON/12/UBERON_2001612.md +++ b/md/UBERON/12/UBERON_2001612.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001612 * *Label* = sensory canal - * *Definition* = Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be. ## Synonyms - * lateral line canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001612] - * lateral-line canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001612] + * lateral line canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001612 ] + * lateral-line canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001612 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001812.md b/md/UBERON/12/UBERON_2001812.md index e7aa449469..0f9c50e41a 100644 --- a/md/UBERON/12/UBERON_2001812.md +++ b/md/UBERON/12/UBERON_2001812.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001812 * *Label* = preoperculo-mandibular sensory canal - * *Definition* = Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with the otic and post-otic sensory canals at their union. ## Synonyms - * preoperculo-mandibular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001812] + * preoperculo-mandibular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001812 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2001912.md b/md/UBERON/12/UBERON_2001912.md index ea03c5a38d..cc97e75b39 100644 --- a/md/UBERON/12/UBERON_2001912.md +++ b/md/UBERON/12/UBERON_2001912.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001912 * *Label* = pharyngobranchial 3 element - * *Definition* = Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngobranchial element, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2002012.md b/md/UBERON/12/UBERON_2002012.md index 0c68fa225a..718a46a2e7 100644 --- a/md/UBERON/12/UBERON_2002012.md +++ b/md/UBERON/12/UBERON_2002012.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002012 * *Label* = dentary foramen - * *Definition* = Foramen located on the dentary for passage of the mandibular nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen located on the dentary for passage of the mandibular nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2002112.md b/md/UBERON/12/UBERON_2002112.md index 02b6724b67..da767e0441 100644 --- a/md/UBERON/12/UBERON_2002112.md +++ b/md/UBERON/12/UBERON_2002112.md @@ -6,8 +6,8 @@ ## Synonyms - * preural centrum 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002112] - * pu3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002112] + * preural centrum 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002112 ] + * pu3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002112 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2005012.md b/md/UBERON/12/UBERON_2005012.md index bb76449bc9..d2f9cbc42f 100644 --- a/md/UBERON/12/UBERON_2005012.md +++ b/md/UBERON/12/UBERON_2005012.md @@ -6,8 +6,8 @@ ## Synonyms - * AFA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005012] - * afferent filamental arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005012[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * AFA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005012 ] + * afferent filamental arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005012, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2005212.md b/md/UBERON/12/UBERON_2005212.md index 7167b07c1f..06d2a8e335 100644 --- a/md/UBERON/12/UBERON_2005212.md +++ b/md/UBERON/12/UBERON_2005212.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon medial interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005212] + * mesencephalon medial interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005212 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/12/UBERON_2005412.md b/md/UBERON/12/UBERON_2005412.md index 1fb44b8fce..c8a83d6910 100644 --- a/md/UBERON/12/UBERON_2005412.md +++ b/md/UBERON/12/UBERON_2005412.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005412 * *Label* = transverse canal - * *Definition* = Duct that crosses the midline connecting the sacculi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Duct that crosses the midline connecting the sacculi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_2007012.md b/md/UBERON/12/UBERON_2007012.md index b7e9eb1ea7..14e06bef7f 100644 --- a/md/UBERON/12/UBERON_2007012.md +++ b/md/UBERON/12/UBERON_2007012.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3000012.md b/md/UBERON/12/UBERON_3000012.md index be227ec38e..096c71eed7 100644 --- a/md/UBERON/12/UBERON_3000012.md +++ b/md/UBERON/12/UBERON_3000012.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000012 * *Label* = angulosplenial coronoid process - * *Definition* = Point of insertion of the adductor mandibulae musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Point of insertion of the adductor mandibulae musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3000112.md b/md/UBERON/12/UBERON_3000112.md index 5d6d845064..55bce8a790 100644 --- a/md/UBERON/12/UBERON_3000112.md +++ b/md/UBERON/12/UBERON_3000112.md @@ -6,7 +6,7 @@ ## Synonyms - * dental ridge of premaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000112] + * dental ridge of premaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000112 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3000512.md b/md/UBERON/12/UBERON_3000512.md index fbb90e7a8d..19af1bc378 100644 --- a/md/UBERON/12/UBERON_3000512.md +++ b/md/UBERON/12/UBERON_3000512.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000512 * *Label* = processus zygomatico-maxillaris - * *Definition* = Posterodorsal extension of the maxilla by which it establishes contact with the squamosal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterodorsal extension of the maxilla by which it establishes contact with the squamosal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3000712.md b/md/UBERON/12/UBERON_3000712.md index a8606afd76..1eb2924f89 100644 --- a/md/UBERON/12/UBERON_3000712.md +++ b/md/UBERON/12/UBERON_3000712.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000712 * *Label* = opisthocoelous - * *Definition* = Ectochordal or stegochordal vertebral centra that are convex anteriorly and concave posteriorly; they bear a condyle on the anterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Ectochordal or stegochordal vertebral centra that are convex anteriorly and concave posteriorly; they bear a condyle on the anterior end for the articulation with the posterior adjacent vertebral centrum, forming a ball-and-socket joint that allows extensive motion in most directions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3010312.md b/md/UBERON/12/UBERON_3010312.md index 446f57e436..dbac05dee4 100644 --- a/md/UBERON/12/UBERON_3010312.md +++ b/md/UBERON/12/UBERON_3010312.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010312 * *Label* = obsolete thymocyte - * *Definition* = An immature T cell located in the thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = An immature T cell located in the thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000893 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/12/UBERON_3010612.md b/md/UBERON/12/UBERON_3010612.md index d941a85bb8..48746d6481 100644 --- a/md/UBERON/12/UBERON_3010612.md +++ b/md/UBERON/12/UBERON_3010612.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0012451 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/12/UBERON_3010712.md b/md/UBERON/12/UBERON_3010712.md index 590016cb04..7c8e49e2c1 100644 --- a/md/UBERON/12/UBERON_3010712.md +++ b/md/UBERON/12/UBERON_3010712.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010712 * *Label* = levator mandibulae externus profundus - * *Definition* = Muscle which is responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Muscle which is responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_3010812.md b/md/UBERON/12/UBERON_3010812.md index 9279c517d0..046807a83b 100644 --- a/md/UBERON/12/UBERON_3010812.md +++ b/md/UBERON/12/UBERON_3010812.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_4000012.md b/md/UBERON/12/UBERON_4000012.md index 2844a8e64b..eae512a9a7 100644 --- a/md/UBERON/12/UBERON_4000012.md +++ b/md/UBERON/12/UBERON_4000012.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000012 * *Label* = obsolete skeletogenic cell - * *Definition* = Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007001 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/12/UBERON_4100012.md b/md/UBERON/12/UBERON_4100012.md index a86a9c65bc..cf17291a1f 100644 --- a/md/UBERON/12/UBERON_4100012.md +++ b/md/UBERON/12/UBERON_4100012.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_4200012.md b/md/UBERON/12/UBERON_4200012.md index dc97fe8a1e..a2491a7cd2 100644 --- a/md/UBERON/12/UBERON_4200012.md +++ b/md/UBERON/12/UBERON_4200012.md @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_4200112.md b/md/UBERON/12/UBERON_4200112.md index c37f2a2966..6f4b582dcf 100644 --- a/md/UBERON/12/UBERON_4200112.md +++ b/md/UBERON/12/UBERON_4200112.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/12/UBERON_4300012.md b/md/UBERON/12/UBERON_4300012.md index 1c06473da8..7fddc1c9eb 100644 --- a/md/UBERON/12/UBERON_4300012.md +++ b/md/UBERON/12/UBERON_4300012.md @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0000013.md b/md/UBERON/13/UBERON_0000013.md index e6ee825b90..262d49e674 100644 --- a/md/UBERON/13/UBERON_0000013.md +++ b/md/UBERON/13/UBERON_0000013.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000013 * *Label* = sympathetic nervous system - * *Definition* = The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_nervous_system] + * *Definition* = The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_nervous_system ] * *Comment* = Development notes: has developmental contribution from NC in verteberates (UBERONREF:0000002) ## Synonyms - * pars sympathica divisionis autonomici systematis nervosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9906[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars sympathica divisionis autonomici systematis nervosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9906, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sympathetic nervous system * sympathetic part of autonomic division of nervous system - * pars sympathica divisionis autonomici systematis nervosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sympathetic_nervous_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars sympathica divisionis autonomici systematis nervosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sympathetic_nervous_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,9 +30,9 @@ * NIF_GrossAnatomy:birnlex_2516 * SCTID:362484004 * TAO:0001576 - * UMLS:C0039044 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2516] - * UMLS:C0039044 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sympathetic_Nervous_System] - * UMLS:C1269646 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2516] + * UMLS:C0039044 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2516 ] + * UMLS:C0039044 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sympathetic_Nervous_System ] + * UMLS:C1269646 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2516 ] * VHOG:0000384 * Wikipedia:Sympathetic_nervous_system * ZFA:0001576 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the autonomic nervous system which chiefly contains adrenergic fibres and tends to control and reduce secretions, decrease the contractility and hence the tone of smooth muscles and provoke the contraction of blood vessels. Essentially, it consists of preganglionic fibres from the thoracic and upper lumbar parts of the spinal cord. These fibres, by means of delicate rami communicantes, cross over to ganglia sited in a pair of ganglionated cords on each side of the vertebral column or to more peripheral ganglia. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The autonomic nervous system is composed of three divisions: the sympathetic division, the parasympathetic division, and the enteric division. (...) In ray-finned teleost fishes, a sympathetic chain is present, and dual innervation of additional organs can be observed. A similar pattern can be found in amphibians (...). The evolution of the autonomic nervous system has been quite conservative, especially in the tetrapod lineage.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0000113.md b/md/UBERON/13/UBERON_0000113.md index f46e8d304e..d32e651037 100644 --- a/md/UBERON/13/UBERON_0000113.md +++ b/md/UBERON/13/UBERON_0000113.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000113 * *Label* = post-juvenile adult stage - * *Definition* = The stage of being a sexually mature adult animal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The stage of being a sexually mature adult animal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0000313.md b/md/UBERON/13/UBERON_0000313.md index 8d2fd48dab..24f636bed5 100644 --- a/md/UBERON/13/UBERON_0000313.md +++ b/md/UBERON/13/UBERON_0000313.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000313 * *Label* = tibial cartilage tissue - * *Definition* = Cartilage pertaining to the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = Cartilage pertaining to the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] * *Comment* = This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia ## Synonyms - * cartilage of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33923] + * cartilage of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33923 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0000913.md b/md/UBERON/13/UBERON_0000913.md index a8b3e14ab6..7ff353c735 100644 --- a/md/UBERON/13/UBERON_0000913.md +++ b/md/UBERON/13/UBERON_0000913.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000913 * *Label* = interstitial fluid - * *Definition* = Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9673[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interstitial_fluid] + * *Definition* = Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9673, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interstitial_fluid ] ## Synonyms - * intercellular fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000042] - * tissue fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000042] + * intercellular fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000042 ] + * tissue fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000042 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001013.md b/md/UBERON/13/UBERON_0001013.md index 7c24090b18..d4006ab199 100644 --- a/md/UBERON/13/UBERON_0001013.md +++ b/md/UBERON/13/UBERON_0001013.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001013 * *Label* = adipose tissue - * *Definition* = Connective tissue composed of adipocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adipose_tissue] + * *Definition* = Connective tissue composed of adipocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adipose_tissue ] * *Comment* = Note in FMA this is dense irregular connective tissue. Taxon notes: n humans, adipose tissue is located beneath the skin (subcutaneous fat), around internal organs (visceral fat), in bone marrow (yellow bone marrow) and in breast tissue. Adipose tissue is found in specific locations, which are referred to as adipose depots. Adipose tissue contains several cell types, with the highest percentage of cells being adipocytes, which contain fat droplets. Other cell types include fibroblasts, macrophages, and endothelial cells. Adipose tissue contains many small blood vessels.; Mice have eight major adipose depots, four of which are within the abdominal cavity. The paired gonadal depots are attached to the uterus and ovaries in females and the epididymis and testes in males; the paired retroperitoneal depots are found along the dorsal wall of the abdomen, surrounding the kidney, and, when massive, extend into the pelvis. The mesenteric depot forms a glue-like web that supports the intestines, and the omental depot, which originates near the stomach and spleen, and, when massive, extends into the ventral abdomen. ## Synonyms - * fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000009] + * fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000009 ] * fat tissue * fatty tissue - * adipose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001487] - * bodyfat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001487] + * adipose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001487 ] + * bodyfat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001487 ] * fatty depot ## Cross-references @@ -33,7 +33,7 @@ * OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA * SCTID:55603005 * TAO:0002134 - * UMLS:C0001527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adipose_Tissue] + * UMLS:C0001527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adipose_Tissue ] * VHOG:0001284 * Wikipedia:Adipose_tissue * XAO:0003049 @@ -54,7 +54,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [fat cell](../../CL/36/CL_0000136.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Adipose tissue is unique to vertebrates. It is found in mostmammals, birds, reptiles and amphibians, and a variety is found in some species of fish. Furthermore, in insects the fat body found in larvae as well as in adults shares some homology with adipose tissue.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = adipose * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001113.md b/md/UBERON/13/UBERON_0001113.md index 02324088c8..7f4212d473 100644 --- a/md/UBERON/13/UBERON_0001113.md +++ b/md/UBERON/13/UBERON_0001113.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001113 * *Label* = lobe of liver - * *Definition* = Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Liver#Lobes] + * *Definition* = Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Liver#Lobes ] * *Comment* = editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts ## Synonyms @@ -18,7 +18,7 @@ * FMA:13361 * MA:0000360 * SCTID:245378000 - * UMLS:C0447541 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Liver_Lobe] + * UMLS:C0447541 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Liver_Lobe ] * Wikipedia:Liver#Lobes * ncithesaurus:Liver_Lobe @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001213.md b/md/UBERON/13/UBERON_0001213.md index be4703266d..5056ea2642 100644 --- a/md/UBERON/13/UBERON_0001213.md +++ b/md/UBERON/13/UBERON_0001213.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001213 * *Label* = intestinal villus - * *Definition* = Tiny, finger-like projections that protrude from the epithelial lining of the intestinal wall[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intestinal_villus] + * *Definition* = Tiny, finger-like projections that protrude from the epithelial lining of the intestinal wall[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intestinal_villus ] * *Comment* = Editor notes: in mammals, villi are (largely?) absent from the large intestine, so we treat this as equivalent to small intestinal villus. small/large subdivision may not make sense for all speciesi for which this is present (see ZFA). Note that VHOG quotes ISBN:978-0030223693 as suggesting there are some villi in the large intestine. AO Notes: the BTO class refers to a generic villous ## Synonyms - * enteric villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0011473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * enteric villous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0011473] - * enteric villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0011473] - * intestinal villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * villi intestinales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003121] - * villus intestinalis (intestinum tenue) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15072] + * enteric villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0011473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * enteric villous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0011473 ] + * enteric villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0011473 ] + * intestinal villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * villi intestinales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003121 ] + * villus intestinalis (intestinum tenue) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15072 ] * intestinal villus layer - * small intestine villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001563] - * villi intestinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intestinal_villus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * small intestine villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001563 ] + * villi intestinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intestinal_villus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0001563 * SCTID:23230007 * TAO:0005125 - * UMLS:C1519988 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Villus] + * UMLS:C1519988 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Villus ] * Wikipedia:Intestinal_villus * ZFA:0005125 * http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Crosnier et al. 2005[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007607 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001313.md b/md/UBERON/13/UBERON_0001313.md index 9da983b828..6532bee8ba 100644 --- a/md/UBERON/13/UBERON_0001313.md +++ b/md/UBERON/13/UBERON_0001313.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001313 * *Label* = iliolumbar artery - * *Definition* = The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliolumbar_artery] + * *Definition* = The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliolumbar_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ilio-lumbar artery - * arteria iliolumbalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliolumbar_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria iliolumbalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliolumbar_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18845 * MA:0001976 * SCTID:113267002 - * UMLS:C0226367 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliolumbar_Artery] + * UMLS:C0226367 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliolumbar_Artery ] * Wikipedia:Iliolumbar_artery * http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001413.md b/md/UBERON/13/UBERON_0001413.md index 277d03ac13..3312509343 100644 --- a/md/UBERON/13/UBERON_0001413.md +++ b/md/UBERON/13/UBERON_0001413.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001413 * *Label* = brachial vein - * *Definition* = In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_vein] + * *Definition* = In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * MA:0002087 * OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA * SCTID:181390006 - * UMLS:C0226812 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brachial_Vein] + * UMLS:C0226812 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brachial_Vein ] * Wikipedia:Brachial_vein * galen:BrachialVein * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001513.md b/md/UBERON/13/UBERON_0001513.md index ca549729d3..616e267543 100644 --- a/md/UBERON/13/UBERON_0001513.md +++ b/md/UBERON/13/UBERON_0001513.md @@ -3,50 +3,50 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001513 * *Label* = skin of pes - * *Definition* = A zone of skin that is part of a pes [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a pes [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * autopod of hind limb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autopod of hind limb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * foot skin - * foot zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb autopod zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37834] - * terminal segment of free lower limb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18504[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb autopod zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37834 ] + * terminal segment of free lower limb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18504, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -54,7 +54,7 @@ * FMA:37834 * MA:0000654 * SCTID:181529000 - * UMLS:C0222289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Skin] + * UMLS:C0222289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Skin ] * ncithesaurus:Foot_Skin ## Subsets @@ -67,15 +67,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001513 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001613.md b/md/UBERON/13/UBERON_0001613.md index b8d8d42699..244e2442f3 100644 --- a/md/UBERON/13/UBERON_0001613.md +++ b/md/UBERON/13/UBERON_0001613.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001613 * *Label* = occipital artery - * *Definition* = The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_artery] + * *Definition* = The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002009 * OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA * SCTID:244219005 - * UMLS:C0226117 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Occipital_Artery] + * UMLS:C0226117 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Occipital_Artery ] * Wikipedia:Occipital_artery * http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001713.md b/md/UBERON/13/UBERON_0001713.md index c3fc082f29..c423b8d45a 100644 --- a/md/UBERON/13/UBERON_0001713.md +++ b/md/UBERON/13/UBERON_0001713.md @@ -7,7 +7,7 @@ ## Synonyms * inferior eyelid - * palpebra inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54442[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palpebra inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54442, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001263 * OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA * SCTID:362528002 - * UMLS:C0229258 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Eyelid] + * UMLS:C0229258 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Eyelid ] * VHOG:0000388 * XAO:0000007 * http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A tetrapod's eye usually has one or more eyelids that can move across its surface and protect and cleanse it. The eye of lissamphibians has a stationary upper eyelid but a movable and transparent lower one.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001813.md b/md/UBERON/13/UBERON_0001813.md index 48d7fac860..c2182261ed 100644 --- a/md/UBERON/13/UBERON_0001813.md +++ b/md/UBERON/13/UBERON_0001813.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001813 * *Label* = somatic nerve plexus - * *Definition* = A nerve plexus that is part of a somatic nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve plexus that is part of a somatic nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * plexus nervorum spinalium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5903[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus of spinal nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5903] - * spinal nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5903] + * plexus nervorum spinalium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5903, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus of spinal nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5903 ] + * spinal nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5903 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:5903 * MA:0000235 * SCTID:42280003 - * UMLS:C0228603 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Nerve_Plexus] + * UMLS:C0228603 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Nerve_Plexus ] * VHOG:0000925 * ncithesaurus:Spinal_Nerve_Plexus @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve plexus](../../UBERON/10/UBERON_0001810.md) and [part_of](../../BFO/50/BFO_0000050.md) some [somatic nervous system](../../UBERON/12/UBERON_0000012.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0001913.md b/md/UBERON/13/UBERON_0001913.md index 24f87f1a1b..4bb55c61c6 100644 --- a/md/UBERON/13/UBERON_0001913.md +++ b/md/UBERON/13/UBERON_0001913.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001913 * *Label* = milk - * *Definition* = Secretion produced by the mammary gland.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Breast_milk] + * *Definition* = Secretion produced by the mammary gland.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Breast_milk ] * *Comment* = AO notes: ncit:Milk refers specifically to cow milk ## Synonyms @@ -23,7 +23,7 @@ * MESH:A13.622 * MIAA:0000056 * OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA - * UMLS:C1511310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Breast_Fluid_or_Secretion] + * UMLS:C1511310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Breast_Fluid_or_Secretion ] * VHOG:0001263 * Wikipedia:Breast_milk * galen:Milk @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The detailed similarities of mammary glands in living monotremes, marsupials, and eutherians argue for a monophyletic origin of these glands, perhaps by the combination of parts of preexisting sebaceous and sweat glands.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002013.md b/md/UBERON/13/UBERON_0002013.md index c382d3f7e7..5d1665b27d 100644 --- a/md/UBERON/13/UBERON_0002013.md +++ b/md/UBERON/13/UBERON_0002013.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002013 * *Label* = superior hypogastric nerve plexus - * *Definition* = The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_hypogastric_plexus] + * *Definition* = The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_hypogastric_plexus ] * *Comment* = Check relationship with generic hypogastric nerve/plexus ## Synonyms - * nervus presacralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6642[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus hypogastricus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6642[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus presacralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6642, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus hypogastricus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6642, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * presacral nerve * superior hypogastric plexus * hypogastric plexus - * plexus hypogastricus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_hypogastric_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus hypogastricus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_hypogastric_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,7 +32,7 @@ ## Superclasses * [autonomic nerve plexus](../../UBERON/16/UBERON_0001816.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hypogastric nerve](../../UBERON/03/UBERON_0005303.md) * [adjacent to](../../RO/20/RO_0002220.md) some [vertebral centrum](../../UBERON/75/UBERON_0001075.md) ## Equivalencies @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002113.md b/md/UBERON/13/UBERON_0002113.md index 5d05cb2b4a..b7977d10b5 100644 --- a/md/UBERON/13/UBERON_0002113.md +++ b/md/UBERON/13/UBERON_0002113.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002113 * *Label* = kidney - * *Definition* = A paired organ which has the production of urine as its primary function. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Kidney] + * *Definition* = A paired organ which has the production of urine as its primary function. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Kidney ] ## Synonyms - * reniculate kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reniculate_kidney[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * reniculate kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reniculate_kidney, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,7 +24,7 @@ * MIAA:0000119 * OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA * SCTID:181414000 - * UMLS:C0022646 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Kidney] + * UMLS:C0022646 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Kidney ] * Wikipedia:Kidney * XAO:0003267 * galen:Kidney @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = renal * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_264815 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002213.md b/md/UBERON/13/UBERON_0002213.md index f49a587efc..e592d19523 100644 --- a/md/UBERON/13/UBERON_0002213.md +++ b/md/UBERON/13/UBERON_0002213.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002213 * *Label* = cartilaginous joint - * *Definition* = Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cartilaginous_joint] + * *Definition* = Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cartilaginous_joint ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * articulatio cartilaginea - * junctura cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cartilaginous_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * junctura cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cartilaginous_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002313.md b/md/UBERON/13/UBERON_0002313.md index 15d493d622..cbdbc45d59 100644 --- a/md/UBERON/13/UBERON_0002313.md +++ b/md/UBERON/13/UBERON_0002313.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002313 * *Label* = hippocampus pyramidal layer - * *Definition* = A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1444] + * *Definition* = A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1444 ] ## Synonyms - * pyramidal cell layer of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1444] - * pyramidal layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83895] - * stratum pyramidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1444] - * stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1444] - * gyrus occipitalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:156[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus occipitalis tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:156[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pyramidal cell layer of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1444 ] + * pyramidal layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83895 ] + * stratum pyramidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1444 ] + * stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1444 ] + * gyrus occipitalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:156, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus occipitalis tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:156, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hippocampal pyramidal cell layer * hippocampal pyramidal layer * hippocampus pyramidal cell layer @@ -25,7 +25,7 @@ * FMA:83895 * MA:0000956 * NIF_GrossAnatomy:birnlex_1444 - * NeuroNames:156 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1444] + * NeuroNames:156 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1444 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005369 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002413.md b/md/UBERON/13/UBERON_0002413.md index 0c554f9eb3..608e3ab3a3 100644 --- a/md/UBERON/13/UBERON_0002413.md +++ b/md/UBERON/13/UBERON_0002413.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002413 * *Label* = cervical vertebra - * *Definition* = A vertebra that is located in the cervical region of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A vertebra that is located in the cervical region of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery. ## Synonyms - * cervical vertebrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * vertebrae cervicales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_vertebrae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cervical vertebrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * vertebrae cervicales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_vertebrae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical region of vertebral column](../../UBERON/72/UBERON_0006072.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002513.md b/md/UBERON/13/UBERON_0002513.md index 55ebe46d10..6efd9fb5a2 100644 --- a/md/UBERON/13/UBERON_0002513.md +++ b/md/UBERON/13/UBERON_0002513.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002513 * *Label* = endochondral bone - * *Definition* = Replacement bone that forms within cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000145[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Replacement bone that forms within cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000145, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred ## Synonyms - * ossified chondrogenic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000145] - * cartilaginous bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002157] + * ossified chondrogenic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000145 ] + * cartilaginous bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002157 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [develops from](../../RO/02/RO_0002202.md) some [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) ## Other Logical Axioms @@ -46,9 +46,10 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Replacement bone that forms within cartilage.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002513 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000009 +## Usage + + ## External Comments diff --git a/md/UBERON/13/UBERON_0002613.md b/md/UBERON/13/UBERON_0002613.md index 331a1738ec..b701e56fcd 100644 --- a/md/UBERON/13/UBERON_0002613.md +++ b/md/UBERON/13/UBERON_0002613.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002613 * *Label* = globose nucleus - * *Definition* = One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei. It is recognized in human cerebellum but is not distinguishable in all mammalian species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1158] + * *Definition* = One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei. It is recognized in human cerebellum but is not distinguishable in all mammalian species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1158 ] ## Synonyms - * nucleus interpositus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72536[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior interposed nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72536] - * posterior interpositus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72536] - * nuclei globosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:689[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus globosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Globose_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus globosus cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:689[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interpositus posterior cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:689[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus interpositus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72536, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior interposed nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72536 ] + * posterior interpositus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72536 ] + * nuclei globosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:689, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus globosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Globose_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus globosus cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:689, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interpositus posterior cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:689, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Glo * FMA:72536 * NIF_GrossAnatomy:birnlex_1158 - * NeuroNames:689 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1158] - * UMLS:C0175489 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1158] + * NeuroNames:689 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1158 ] + * UMLS:C0175489 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1158 ] * Wikipedia:Globose_nucleus * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted][Wikipedia:Globose_nucleus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002713.md b/md/UBERON/13/UBERON_0002713.md index 38f3ed2540..ed18720794 100644 --- a/md/UBERON/13/UBERON_0002713.md +++ b/md/UBERON/13/UBERON_0002713.md @@ -3,75 +3,75 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002713 * *Label* = circular sulcus of insula - * *Definition* = A marginal sulcus that is part of a insula [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A marginal sulcus that is part of a insula [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * central lobe marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * central lobe marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * central lobe marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * circular fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83753] + * central lobe marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * central lobe marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * central lobe marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * circular fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83753 ] * circular sulcus (of reil) - * circuminsular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83753] - * ciruclar insular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1475] - * cortex of island marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cortex of island marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cortex of island marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula lobule marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula lobule marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula lobule marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insula marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular cortex marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular cortex marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular cortex marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular lobe marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular lobe marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular lobe marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular region marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular region marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * insular region marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * island of reil marginal branch of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * island of reil marginal ramus of cingulate sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * island of reil marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limiting fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83753] - * marginal branch of cingulate sulcus of central lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of cortex of island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of insula lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of insular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of insular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal branch of cingulate sulcus of island of reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal insular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1475] - * marginal ramus of cingulate sulcus of central lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of cortex of island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of insula lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of insular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of insular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal ramus of cingulate sulcus of island of reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of central lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of cortex of island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83753] - * marginal sulcus of insula lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of insular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of insular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * marginal sulcus of island of reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sulcus circularis insulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1475] - * sulcus marginalis insulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1475] - * crs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1475[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * circular insular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * circular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * circular sulcus of the insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * circuminsular fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * cruciform sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:crs] - * limiting sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * peri-insular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] - * periinsular sulci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:51] + * circuminsular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83753 ] + * ciruclar insular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1475 ] + * cortex of island marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cortex of island marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cortex of island marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula lobule marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula lobule marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula lobule marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insula marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular cortex marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular cortex marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular cortex marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular lobe marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular lobe marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular lobe marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular region marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular region marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * insular region marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * island of reil marginal branch of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * island of reil marginal ramus of cingulate sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * island of reil marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limiting fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83753 ] + * marginal branch of cingulate sulcus of central lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of cortex of island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of insula lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of insular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of insular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal branch of cingulate sulcus of island of reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal insular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1475 ] + * marginal ramus of cingulate sulcus of central lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of cortex of island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of insula lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of insular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of insular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal ramus of cingulate sulcus of island of reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of central lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of cortex of island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83753 ] + * marginal sulcus of insula lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of insular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of insular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * marginal sulcus of island of reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sulcus circularis insulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1475 ] + * sulcus marginalis insulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1475 ] + * crs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1475, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * circular insular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * circular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * circular sulcus of the insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * circuminsular fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * cruciform sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:crs ] + * limiting sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * peri-insular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] + * periinsular sulci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:51 ] ## Cross-references @@ -79,8 +79,8 @@ * BAMS:mis * FMA:83753 * NIF_GrossAnatomy:birnlex_1475 - * NeuroNames:51 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1475] - * UMLS:C0228258 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1475] + * NeuroNames:51 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1475 ] + * UMLS:C0228258 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1475 ] ## Subsets @@ -92,15 +92,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [marginal sulcus](../../UBERON/12/UBERON_0002912.md) and [part_of](../../BFO/50/BFO_0000050.md) some [insula](../../UBERON/22/UBERON_0002022.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002813.md b/md/UBERON/13/UBERON_0002813.md index 50a7b894b5..a5261d8727 100644 --- a/md/UBERON/13/UBERON_0002813.md +++ b/md/UBERON/13/UBERON_0002813.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002813 * *Label* = right cerebral hemisphere - * *Definition* = A cerebral hemisphere that is in the right side of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cerebral hemisphere that is in the right side of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1797] + * right hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1797 ] ## Cross-references @@ -15,7 +15,7 @@ * NIF_GrossAnatomy:birnlex_1797 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA * SCTID:362322002 - * UMLS:C0228175 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Cerebral_Hemisphere] + * UMLS:C0228175 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Cerebral_Hemisphere ] * ncithesaurus:Right_Cerebral_Hemisphere ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0002913.md b/md/UBERON/13/UBERON_0002913.md index a7c3a3f0b5..9936ec25a7 100644 --- a/md/UBERON/13/UBERON_0002913.md +++ b/md/UBERON/13/UBERON_0002913.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002913 * *Label* = intraparietal sulcus - * *Definition* = The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intraparietal_sulcus] + * *Definition* = The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intraparietal_sulcus ] ## Synonyms - * interparietal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83772] - * intraparietal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83772] - * sulcus interparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4031] - * itps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4031[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Turner sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003787] - * inferior pontine sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ips] - * intraparietal sulcus of Turner [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003787] - * sulcus intraparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003787] - * sulcus intraparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intraparietal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * interparietal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83772 ] + * intraparietal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83772 ] + * sulcus interparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4031 ] + * itps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4031, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Turner sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003787 ] + * inferior pontine sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ips ] + * intraparietal sulcus of Turner [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003787 ] + * sulcus intraparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003787 ] + * sulcus intraparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intraparietal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,11 +25,11 @@ * BTO:0003787 * FMA:83772 * NIF_GrossAnatomy:birnlex_4031 - * NeuroNames:97 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4031] + * NeuroNames:97 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4031 ] * SCTID:279338006 - * UMLS:C0228213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4031] - * UMLS:C0228213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intraparietal_Sulcus] - * UMLS:C1281069 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4031] + * UMLS:C0228213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4031 ] + * UMLS:C0228213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intraparietal_Sulcus ] + * UMLS:C1281069 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4031 ] * Wikipedia:Intraparietal_sulcus * http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray726_intraparietal_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray726_intraparietal_sulcus.svg/200px-Gray726_intraparietal_sulcus.svg.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003013.md b/md/UBERON/13/UBERON_0003013.md index 2818c9e5fd..6ae212c8a6 100644 --- a/md/UBERON/13/UBERON_0003013.md +++ b/md/UBERON/13/UBERON_0003013.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003013 * *Label* = alar central lobule - * *Definition* = The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_central_lobule] + * *Definition* = The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_central_lobule ] ## Synonyms - * alae of central lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72517] - * lobules II, III of vermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72517] - * ala lobuli centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_central_lobule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * alae of central lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72517 ] + * lobules II, III of vermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72517 ] + * ala lobuli centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_central_lobule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003113.md b/md/UBERON/13/UBERON_0003113.md index 31f9fd77c8..8a724b96bf 100644 --- a/md/UBERON/13/UBERON_0003113.md +++ b/md/UBERON/13/UBERON_0003113.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003113 * *Label* = dermatocranium - * *Definition* = Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull_roof[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000863] + * *Definition* = Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull_roof, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000863 ] * *Comment* = Editor notes: wikipedia treats skull roof and dermatocranium as synonymous, but some sources treat the roof as being part of the dermatocranium - see UBERONREF:0000007 ## Synonyms - * dendrocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000863] - * exocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000007] - * dermal skull roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull_roof] + * dendrocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000863 ] + * exocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000007 ] + * dermal skull roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull_roof ] * dermatocranial cover - * roof of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull_roof] - * skull roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull_roof] - * dermal bone cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000863] + * roof of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull_roof ] + * skull roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull_roof ] + * dermal bone cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000863 ] * dermal part of skull * dermal skull bones - * roofing bones of the skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull_roof] + * roofing bones of the skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull_roof ] ## Cross-references @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is part of the cranium and composed of dermally derived bones.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is part of the cranium which consists of dermally derived bones.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003413.md b/md/UBERON/13/UBERON_0003413.md index 77aa5c8860..6913a4e513 100644 --- a/md/UBERON/13/UBERON_0003413.md +++ b/md/UBERON/13/UBERON_0003413.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003413 * *Label* = pectoral appendage bud mesenchyme - * *Definition* = Mesenchyme that is part of a pectoral appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pectoral appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesoderm pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000789[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pectoral fin bud mesenchyme [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * upper limb bud mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002135] - * wing mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesoderm pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000789, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pectoral fin bud mesenchyme [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * upper limb bud mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002135 ] + * wing mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage bud](../../UBERON/19/UBERON_0005419.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesoderm that is part of the pectoral fin bud.[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005703 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003513.md b/md/UBERON/13/UBERON_0003513.md index a8f4ecdc4d..a864ea7352 100644 --- a/md/UBERON/13/UBERON_0003513.md +++ b/md/UBERON/13/UBERON_0003513.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003513 * *Label* = trunk blood vessel - * *Definition* = A blood vessel that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003513 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003613.md b/md/UBERON/13/UBERON_0003613.md index 06c796370a..258bbeb9c9 100644 --- a/md/UBERON/13/UBERON_0003613.md +++ b/md/UBERON/13/UBERON_0003613.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003613 * *Label* = cardiovascular system elastic tissue - * *Definition* = An elastic tissue that is part of a circulatory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An elastic tissue that is part of a circulatory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiovascular system elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiovascular system textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * circulatory system elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * circulatory system elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * circulatory system textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of cardiovascular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of cardiovascular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of cardiovascular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiovascular system elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiovascular system textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * circulatory system elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * circulatory system elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * circulatory system textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of cardiovascular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of cardiovascular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of cardiovascular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [circulatory system](../../UBERON/09/UBERON_0001009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003713.md b/md/UBERON/13/UBERON_0003713.md index a34bf56437..1e9cb3a0ac 100644 --- a/md/UBERON/13/UBERON_0003713.md +++ b/md/UBERON/13/UBERON_0003713.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003713 * *Label* = splenic vein - * *Definition* = In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_vein] + * *Definition* = In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_vein ] ## Synonyms - * lienal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002164[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_vein] - * vena lienalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lienal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002164, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_vein ] + * vena lienalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.908.670.730 * OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA * SCTID:278029005 - * UMLS:C0038001 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Vein] + * UMLS:C0038001 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Vein ] * Wikipedia:Splenic_vein * galen:SplenicVein * http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0003913.md b/md/UBERON/13/UBERON_0003913.md index fde02e1ebc..f9c988fe6c 100644 --- a/md/UBERON/13/UBERON_0003913.md +++ b/md/UBERON/13/UBERON_0003913.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003913 * *Label* = tooth-like structure - * *Definition* = hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * *Definition* = hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] * *Comment* = see dermal denticle ## Synonyms - * tooth-like organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * tooth-like organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004013.md b/md/UBERON/13/UBERON_0004013.md index 2c928612c1..491b025797 100644 --- a/md/UBERON/13/UBERON_0004013.md +++ b/md/UBERON/13/UBERON_0004013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004013 * *Label* = egg cylinder - * *Definition* = the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003085] + * *Definition* = the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003085 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004113.md b/md/UBERON/13/UBERON_0004113.md index f50bfd7829..4c3ec340e2 100644 --- a/md/UBERON/13/UBERON_0004113.md +++ b/md/UBERON/13/UBERON_0004113.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004113 * *Label* = muscle of auditory ossicle - * *Definition* = A muscle of head that attaches_to a auditory ossicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle of head that attaches_to a auditory ossicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Extent in FMA/SCTID is stapedius and tensor tympani. Consider merging with tympanic cavity muscle ## Synonyms - * auditory ossicles muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49026] - * muscle of auditory ossicles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49026] - * ossicular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49026] + * auditory ossicles muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49026 ] + * muscle of auditory ossicles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49026 ] + * ossicular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49026 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [auditory ossicle](../../UBERON/86/UBERON_0001686.md) and [muscle of head](../../UBERON/76/UBERON_0002376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004313.md b/md/UBERON/13/UBERON_0004313.md index c036a3d4e6..7e126db39f 100644 --- a/md/UBERON/13/UBERON_0004313.md +++ b/md/UBERON/13/UBERON_0004313.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004313 * *Label* = distal phalanx of manual digit 4 - * *Definition* = A distal phalanx that is part of a hand digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a hand digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th digit of hand distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 4th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 4th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23948] - * distal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23948] - * fourth distal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23948] - * fourth finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 4th digit of hand distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 4th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 4th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23948 ] + * distal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23948 ] + * fourth distal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23948 ] + * fourth finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004413.md b/md/UBERON/13/UBERON_0004413.md index ee61e76157..bdd63d043c 100644 --- a/md/UBERON/13/UBERON_0004413.md +++ b/md/UBERON/13/UBERON_0004413.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004413 * *Label* = proximal epiphysis of radius - * *Definition* = A proximal epiphysis that is part of a radius [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a radius [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * proximal end of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:39780] - * proximal radial epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper end of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:39780] + * proximal end of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:39780 ] + * proximal radial epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper end of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:39780 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004513.md b/md/UBERON/13/UBERON_0004513.md index bcd089261b..7d44d9cf7e 100644 --- a/md/UBERON/13/UBERON_0004513.md +++ b/md/UBERON/13/UBERON_0004513.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004513 * *Label* = skeletal muscle tissue of internal intercostal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [internal intercostal muscle](../../UBERON/03/UBERON_0002403.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004513 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004613.md b/md/UBERON/13/UBERON_0004613.md index c1656626a5..13998349c1 100644 --- a/md/UBERON/13/UBERON_0004613.md +++ b/md/UBERON/13/UBERON_0004613.md @@ -7,9 +7,9 @@ ## Synonyms - * C4 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12522] - * cervical vertebra 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001424] - * fourth cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12522] + * C4 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12522 ] + * cervical vertebra 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001424 ] + * fourth cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12522 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:12522 * MA:0001424 * SCTID:181824001 - * UMLS:C0459941 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C4_Vertebra] + * UMLS:C0459941 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C4_Vertebra ] * ncithesaurus:C4_Vertebra ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004713.md b/md/UBERON/13/UBERON_0004713.md index c2093678c7..5afee836fb 100644 --- a/md/UBERON/13/UBERON_0004713.md +++ b/md/UBERON/13/UBERON_0004713.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004713 * *Label* = corpus cavernosum penis - * *Definition* = One of the columns of erectile tissue forming the dorsum and sides of the penis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_cavernosum_penis] + * *Definition* = One of the columns of erectile tissue forming the dorsum and sides of the penis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_cavernosum_penis ] ## Synonyms - * corpus cavernosum of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19618] - * corpus cavernosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019] - * penis erectile tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001743] - * cavernous body of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019] - * corpus cavernosum penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_cavernosum_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus spongiosum penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * penile corpus cavernosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019] - * spongy body of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019] - * spongy body of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002019] + * corpus cavernosum of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19618 ] + * corpus cavernosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019 ] + * penis erectile tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001743 ] + * cavernous body of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019 ] + * corpus cavernosum penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_cavernosum_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus spongiosum penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * penile corpus cavernosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019 ] + * spongy body of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019 ] + * spongy body of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002019 ] ## Cross-references @@ -25,8 +25,8 @@ * FMA:19618 * MA:0001743 * SCTID:245468004 - * UMLS:C0227937 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpora_Cavernosa] - * UMLS:C1709494 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Penis_Erectile_Tissue] + * UMLS:C0227937 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpora_Cavernosa ] + * UMLS:C1709494 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Penis_Erectile_Tissue ] * Wikipedia:Corpus_cavernosum_penis * http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [corpus cavernosum](../../UBERON/09/UBERON_0006609.md) and [part_of](../../BFO/50/BFO_0000050.md) some [penis](../../UBERON/89/UBERON_0000989.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004813.md b/md/UBERON/13/UBERON_0004813.md index 023f311929..43ed41b676 100644 --- a/md/UBERON/13/UBERON_0004813.md +++ b/md/UBERON/13/UBERON_0004813.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004813 * *Label* = seminiferous tubule epithelium - * *Definition* = The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(male)] + * *Definition* = The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(male) ] ## Synonyms - * epithelial tissue of seminiferous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of seminiferous tubule of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of seminiferous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of seminiferous tubule of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * germinal epithelium (male) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(male)] - * male germinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(male)] - * seminiferous epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001811] - * seminiferous tubule epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * testis germinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000631] - * wall of seminiferous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_epithelium_(male)] + * epithelial tissue of seminiferous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of seminiferous tubule of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of seminiferous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of seminiferous tubule of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * germinal epithelium (male) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(male) ] + * male germinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(male) ] + * seminiferous epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001811 ] + * seminiferous tubule epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * testis germinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000631 ] + * wall of seminiferous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_epithelium_(male) ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0001748 * MESH:A05.360.444.849.700.700 * RETIRED_EHDAA2:0002009 - * UMLS:C0036629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminiferous_Epithelium] + * UMLS:C0036629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminiferous_Epithelium ] * VHOG:0000631 * Wikipedia:Germinal_epithelium_(male) * ncithesaurus:Seminiferous_Epithelium @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminiferous tubule of testis](../../UBERON/43/UBERON_0001343.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0004913.md b/md/UBERON/13/UBERON_0004913.md index cc133e29de..23a29f1d85 100644 --- a/md/UBERON/13/UBERON_0004913.md +++ b/md/UBERON/13/UBERON_0004913.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004913 * *Label* = hepatopancreatic ampulla - * *Definition* = A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_Vater] + * *Definition* = A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_Vater ] ## Synonyms * Vater's ampulla - * ampulla biliaropancreatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15076[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ampulla biliaropancreatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15076, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ampulla of Vater - * ampulla of bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15076] + * ampulla of bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15076 ] * biliaropancreatic ampulla - * papilla Vateri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005167] - * ampulla Vaterii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_Vater[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ampulla hepatopancreatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_Vater[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * papilla duodeni major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005167] + * papilla Vateri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005167 ] + * ampulla Vaterii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_Vater, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ampulla hepatopancreatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_Vater, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * papilla duodeni major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005167 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A03.159.183.079.300.900 * SCTID:362200007 * TAO:0005167 - * UMLS:C0042425 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ampulla_of_Vater] + * UMLS:C0042425 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ampulla_of_Vater ] * Wikipedia:Ampulla_of_Vater * ZFA:0005167 * galen:AmpullaOfVater @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [common bile duct](../../UBERON/74/UBERON_0001174.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenal papilla](../../UBERON/14/UBERON_0004914.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005013.md b/md/UBERON/13/UBERON_0005013.md index c008fc815c..278697a575 100644 --- a/md/UBERON/13/UBERON_0005013.md +++ b/md/UBERON/13/UBERON_0005013.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005013 * *Label* = mucosa of male urethra - * *Definition* = A mucosa that is part of a male urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a male urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * male urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * male urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male urethra](../../UBERON/33/UBERON_0001333.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005113.md b/md/UBERON/13/UBERON_0005113.md index 616b7856b8..b2216a3d34 100644 --- a/md/UBERON/13/UBERON_0005113.md +++ b/md/UBERON/13/UBERON_0005113.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005213.md b/md/UBERON/13/UBERON_0005213.md index 1ff460c20c..15369cc9f0 100644 --- a/md/UBERON/13/UBERON_0005213.md +++ b/md/UBERON/13/UBERON_0005213.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005213 * *Label* = outer renal medulla interstitium - * *Definition* = A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of interstitial tissue that is part of a outer medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney outer medulla interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002621] - * outer medullary interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28337] + * kidney outer medulla interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002621 ] + * outer medullary interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28337 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outer medulla of kidney](../../UBERON/93/UBERON_0001293.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005313.md b/md/UBERON/13/UBERON_0005313.md index 560c60df3b..c9f801cf61 100644 --- a/md/UBERON/13/UBERON_0005313.md +++ b/md/UBERON/13/UBERON_0005313.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005313 * *Label* = mammary duct terminal end bud - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060763] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060763 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005413.md b/md/UBERON/13/UBERON_0005413.md index ad51466b5e..8ca10aa9f7 100644 --- a/md/UBERON/13/UBERON_0005413.md +++ b/md/UBERON/13/UBERON_0005413.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005413 * *Label* = spinocerebellar tract - * *Definition* = This tract conveys interoceptive, proprioceptive, and exteroceptive information from the body's internal organs, and from the trunk, extremities, and neck region to the Cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005036] + * *Definition* = This tract conveys interoceptive, proprioceptive, and exteroceptive information from the body's internal organs, and from the trunk, extremities, and neck region to the Cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005036 ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The spinocerebellar tract is a set of axonal fibers originating in the spinal cord and terminating in the ipsilateral cerebellum. This tract conveys information to the cerebellum about limb and joint position[Wikipedia:Spinocerebellar_tract]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005613.md b/md/UBERON/13/UBERON_0005613.md index d5522ec525..6f2f2367b8 100644 --- a/md/UBERON/13/UBERON_0005613.md +++ b/md/UBERON/13/UBERON_0005613.md @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A study of embryos shows that in all vertebrates six arterial arches link the ventral aorta with a pair of lateral dorsal aortae on each side of the body. The latter unite posteriorly to form a single median dorsal aorta wich takes blood to the body.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005813.md b/md/UBERON/13/UBERON_0005813.md index d32ac8ad6b..10c8e4cf98 100644 --- a/md/UBERON/13/UBERON_0005813.md +++ b/md/UBERON/13/UBERON_0005813.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005813 * *Label* = tubercle - * *Definition* = a round nodule, small eminence, or warty outgrowth found on bones, skin, or within the lungs in tuberculosis. They are also found on the leading edge of Humpback Whale's flippers, improving fluid flow over the flipper's surface[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tubercle_(anatomy)] + * *Definition* = a round nodule, small eminence, or warty outgrowth found on bones, skin, or within the lungs in tuberculosis. They are also found on the leading edge of Humpback Whale's flippers, improving fluid flow over the flipper's surface[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tubercle_(anatomy) ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0005913.md b/md/UBERON/13/UBERON_0005913.md index f65db85432..78365b5173 100644 --- a/md/UBERON/13/UBERON_0005913.md +++ b/md/UBERON/13/UBERON_0005913.md @@ -6,7 +6,7 @@ ## Synonyms - * bone organ zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10483] + * bone organ zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10483 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0006013.md b/md/UBERON/13/UBERON_0006013.md index 04753f1aa8..e4abde1d00 100644 --- a/md/UBERON/13/UBERON_0006013.md +++ b/md/UBERON/13/UBERON_0006013.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006013 * *Label* = interdigital region between manual digits - * *Definition* = An interdigital region that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand interdigit region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000627] - * hand interdigital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000991] + * hand interdigit region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000627 ] + * hand interdigital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000991 ] * interdigital region of manus * manual interdigital region @@ -27,16 +27,18 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region](../../UBERON/12/UBERON_0006012.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0006213.md b/md/UBERON/13/UBERON_0006213.md index b5ba136243..81cccb2e93 100644 --- a/md/UBERON/13/UBERON_0006213.md +++ b/md/UBERON/13/UBERON_0006213.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006213 * *Label* = carpus cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a carpal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a carpal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [carpal bone](../../UBERON/35/UBERON_0001435.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0006713.md b/md/UBERON/13/UBERON_0006713.md index e490ba2762..f46742228b 100644 --- a/md/UBERON/13/UBERON_0006713.md +++ b/md/UBERON/13/UBERON_0006713.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006713 * *Label* = foramen cecum of frontal bone - * *Definition* = The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_cecum_%28frontal_bone%29] + * *Definition* = The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_cecum_%28frontal_bone%29 ] * *Comment* = todo - check if this is what the FMA ID really denotes ## Synonyms - * f. caecum ossis frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_cecum_%28frontal_bone%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen caecum ossis frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_cecum_%28frontal_bone%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * f. caecum ossis frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_cecum_%28frontal_bone%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen caecum ossis frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_cecum_%28frontal_bone%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0006813.md b/md/UBERON/13/UBERON_0006813.md index 62a6c11960..cfc2c117f5 100644 --- a/md/UBERON/13/UBERON_0006813.md +++ b/md/UBERON/13/UBERON_0006813.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006813 * *Label* = nasal skeleton - * *Definition* = Structural framework that provides support to the nasal sacs and ducts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000320] + * *Definition* = Structural framework that provides support to the nasal sacs and ducts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000320 ] ## Synonyms - * skeleton of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60116] + * skeleton of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60116 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0006913.md b/md/UBERON/13/UBERON_0006913.md index 43d90b9a8a..11dce18a41 100644 --- a/md/UBERON/13/UBERON_0006913.md +++ b/md/UBERON/13/UBERON_0006913.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006913 * *Label* = lip epithelium - * *Definition* = An epithelium that is part of a lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lip](../../UBERON/33/UBERON_0001833.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0007113.md b/md/UBERON/13/UBERON_0007113.md index c93a947e02..64f5acc765 100644 --- a/md/UBERON/13/UBERON_0007113.md +++ b/md/UBERON/13/UBERON_0007113.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007113 * *Label* = venom - * *Definition* = Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.200.935[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venom] + * *Definition* = Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.200.935, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venom ] * *Comment* = Note we include a separate class for snake venom ## Synonyms - * zootoxin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:Wikipedia:Venom] + * zootoxin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:Wikipedia:Venom ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0007213.md b/md/UBERON/13/UBERON_0007213.md index 74859ac6c7..bb6ead038b 100644 --- a/md/UBERON/13/UBERON_0007213.md +++ b/md/UBERON/13/UBERON_0007213.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007213 * *Label* = mesenchyme derived from head neural crest - * *Definition* = Mesenchyme that develops_from a cranial neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a cranial neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * head mesenchyme from cranial neural crest - * head mesenchyme from neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000735] + * head mesenchyme from neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000735 ] * head neural crest derived mesenchyme ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [cranial neural crest](../../UBERON/99/UBERON_0003099.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0007413.md b/md/UBERON/13/UBERON_0007413.md index 04747402e5..8b08f15b2b 100644 --- a/md/UBERON/13/UBERON_0007413.md +++ b/md/UBERON/13/UBERON_0007413.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007413 * *Label* = nucleus of pontine reticular formation - * *Definition* = A nucleus of brain that is part of a pontine reticular formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a pontine reticular formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pontine reticular formation nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72245] + * pontine reticular formation nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72245 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine reticular formation](../../UBERON/73/UBERON_0002573.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0007613.md b/md/UBERON/13/UBERON_0007613.md index 85cb88b71a..dd18e4c209 100644 --- a/md/UBERON/13/UBERON_0007613.md +++ b/md/UBERON/13/UBERON_0007613.md @@ -7,12 +7,12 @@ ## Synonyms - * extensor digitorum lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002294] + * extensor digitorum lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002294 ] ## Cross-references * MA:0002294 - * UMLS:C1707983 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Digitorum_Lateralis] + * UMLS:C1707983 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Digitorum_Lateralis ] * ncithesaurus:Extensor_Digitorum_Lateralis ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0007713.md b/md/UBERON/13/UBERON_0007713.md index ba3557c931..d2f0f105de 100644 --- a/md/UBERON/13/UBERON_0007713.md +++ b/md/UBERON/13/UBERON_0007713.md @@ -6,16 +6,16 @@ ## Synonyms - * forth sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2631] - * fourth sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6345] - * fourth sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * forth sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2631 ] + * fourth sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6345 ] + * fourth sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references * EMAPA:25173 * FMA:6345 * NIF_GrossAnatomy:birnlex_2631 - * UMLS:C0501723 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2631] + * UMLS:C0501723 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2631 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0008713.md b/md/UBERON/13/UBERON_0008713.md index 1b8ef4ce09..8aee04f407 100644 --- a/md/UBERON/13/UBERON_0008713.md +++ b/md/UBERON/13/UBERON_0008713.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0008813.md b/md/UBERON/13/UBERON_0008813.md index a661ddecfe..9d99081e13 100644 --- a/md/UBERON/13/UBERON_0008813.md +++ b/md/UBERON/13/UBERON_0008813.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008813 * *Label* = helicotrema - * *Definition* = The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helicotrema] + * *Definition* = The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helicotrema ] ## Synonyms - * Scarpa's orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61275] - * apex of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlea] - * cochlear apex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlea] + * Scarpa's orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61275 ] + * apex of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlea ] + * cochlear apex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlea ] ## Cross-references * FMA:61275 * SCTID:279775003 - * UMLS:C0229512 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Helicotrema] + * UMLS:C0229512 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Helicotrema ] * Wikipedia:Helicotrema * http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png * ncithesaurus:Helicotrema @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008813 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0008913.md b/md/UBERON/13/UBERON_0008913.md index ab80656510..5393a1c77a 100644 --- a/md/UBERON/13/UBERON_0008913.md +++ b/md/UBERON/13/UBERON_0008913.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008913 * *Label* = perichondral bone - * *Definition* = Bone element that is located on the surface of a cartilage element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000308[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Bone element that is located on the surface of a cartilage element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000308, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class ## Synonyms - * perichondral bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001630[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * perichondral bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001630] + * perichondral bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001630, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * perichondral bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001630 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Replacement bone that forms within the connective tissue surrounding cartilage.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0009013.md b/md/UBERON/13/UBERON_0009013.md index 056251e8a4..2358d89525 100644 --- a/md/UBERON/13/UBERON_0009013.md +++ b/md/UBERON/13/UBERON_0009013.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0009113.md b/md/UBERON/13/UBERON_0009113.md index f813042d6a..62a327627b 100644 --- a/md/UBERON/13/UBERON_0009113.md +++ b/md/UBERON/13/UBERON_0009113.md @@ -17,9 +17,9 @@ * [organism subdivision](../../UBERON/75/UBERON_0000475.md) * [part_of](../../BFO/50/BFO_0000050.md) some [anterior region of body](../../UBERON/53/UBERON_0000153.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mediastinum](../../UBERON/28/UBERON_0003728.md) ## Equivalencies @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0009213.md b/md/UBERON/13/UBERON_0009213.md index 6620cc1b99..fc09bc3369 100644 --- a/md/UBERON/13/UBERON_0009213.md +++ b/md/UBERON/13/UBERON_0009213.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009213 * *Label* = pharyngeal membrane of 1st arch - * *Definition* = separates the first pharyngeal groove from the first pharyngeal pouch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:1416037055] + * *Definition* = separates the first pharyngeal groove from the first pharyngeal pouch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:1416037055 ] * *Comment* = check EMAPA - 3 terms appear to match. We follow EMAPA in making each membrane part of the arch with the same number, though in fact it is between these arches ## Synonyms - * 1st branchial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16992] - * 1st pharyngeal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001427] - * future tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17281] - * tympanic membrane primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:1416037055] + * 1st branchial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16992 ] + * 1st pharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001427 ] + * future tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17281 ] + * tympanic membrane primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:1416037055 ] ## Cross-references @@ -28,8 +28,8 @@ * [pharyngeal membrane](../../UBERON/10/UBERON_0009210.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [1st arch pharyngeal cleft](../../UBERON/72/UBERON_0005872.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal pouch 1](../../UBERON/22/UBERON_0007122.md) ## Equivalencies @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0009713.md b/md/UBERON/13/UBERON_0009713.md index e3ddfb35bd..bf5d8cbd5f 100644 --- a/md/UBERON/13/UBERON_0009713.md +++ b/md/UBERON/13/UBERON_0009713.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009713 * *Label* = endocardium of left ventricle - * *Definition* = Endocardium of ventricle which is continuous with mitral valve , aortic valve, atrioventricular septum and the tunica intima of the aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9559] + * *Definition* = Endocardium of ventricle which is continuous with mitral valve , aortic valve, atrioventricular septum and the tunica intima of the aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9559 ] ## Synonyms - * left ventricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001233] - * left ventricular endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9559] - * endocardial lining of left ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17338] - * left ventricle endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001233] + * left ventricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001233 ] + * left ventricular endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9559 ] + * endocardial lining of left ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17338 ] + * left ventricle endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001233 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium of ventricle](../../UBERON/81/UBERON_0001081.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0009913.md b/md/UBERON/13/UBERON_0009913.md index ccca53bce6..1ab6d9a7ba 100644 --- a/md/UBERON/13/UBERON_0009913.md +++ b/md/UBERON/13/UBERON_0009913.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009913 * *Label* = renal lobe - * *Definition* = the portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011381[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_lobe] + * *Definition* = the portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011381, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_lobe ] * *Comment* = Edtor note: todo - add has_part relationships. Taxon notes: human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys[MP] ## Synonyms - * kidney lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011381] - * lobi renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lobus renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * lobi renales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * kidney lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011381 ] + * lobi renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lobus renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * lobi renales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:17881 - * UMLS:C0736382 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Kidney_Lower_Lobe] + * UMLS:C0736382 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Kidney_Lower_Lobe ] * Wikipedia:Renal_lobe * http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png * ncithesaurus:Kidney_Lower_Lobe @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical lobe](../../UBERON/12/UBERON_0009912.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010013.md b/md/UBERON/13/UBERON_0010013.md index d0abe8950d..4b868427f0 100644 --- a/md/UBERON/13/UBERON_0010013.md +++ b/md/UBERON/13/UBERON_0010013.md @@ -6,7 +6,7 @@ ## Synonyms - * lower mandible [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * lower mandible [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * mandibular beak * rostrum mandibulare @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010213.md b/md/UBERON/13/UBERON_0010213.md index f8e5236b8c..030ae51f69 100644 --- a/md/UBERON/13/UBERON_0010213.md +++ b/md/UBERON/13/UBERON_0010213.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010313.md b/md/UBERON/13/UBERON_0010313.md index 6cd9182f11..c26e161da9 100644 --- a/md/UBERON/13/UBERON_0010313.md +++ b/md/UBERON/13/UBERON_0010313.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010313 * *Label* = neural crest-derived structure - * *Definition* = An anatomical structure that develops from the neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops from the neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010413.md b/md/UBERON/13/UBERON_0010413.md index c51be5fe50..3290563817 100644 --- a/md/UBERON/13/UBERON_0010413.md +++ b/md/UBERON/13/UBERON_0010413.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010413 * *Label* = parametrial fat pad - * *Definition* = encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith] + * *Definition* = encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith ] ## Synonyms - * parametrial fat depot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009301] + * parametrial fat depot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009301 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parametrium](../../UBERON/91/UBERON_0010391.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010413 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010513.md b/md/UBERON/13/UBERON_0010513.md index 094ac3183a..42bbdffe87 100644 --- a/md/UBERON/13/UBERON_0010513.md +++ b/md/UBERON/13/UBERON_0010513.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010513 * *Label* = strand of zigzag hair - * *Definition* = A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006366] + * *Definition* = A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006366 ] ## Synonyms - * zigzag hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001898] + * zigzag hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001898 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010513 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010713.md b/md/UBERON/13/UBERON_0010713.md index 48fa8b1104..12c77ed9a8 100644 --- a/md/UBERON/13/UBERON_0010713.md +++ b/md/UBERON/13/UBERON_0010713.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010713 * *Label* = paired fin skeleton - * *Definition* = The collection of all skeletal elements in a single paired fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a single paired fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal system that consists of the paired fins (pectoral or pelvic fins).[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0010913.md b/md/UBERON/13/UBERON_0010913.md index 0770846233..b9b06084ed 100644 --- a/md/UBERON/13/UBERON_0010913.md +++ b/md/UBERON/13/UBERON_0010913.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010913 * *Label* = vertebral element - * *Definition* = Skeletal element that forms around the notochord and is part of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000184[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal element that forms around the notochord and is part of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000184, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Note that Uberon includes a distinct subclass for bony vertebra ## Synonyms @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In contrast to lampreys and jawed vertebrates, hagfishes were thought to lack vertebrae. Now, long overlooked vertebral rudiments have been analysed in hagfish, suggesting that vertebrae existed in the last common ancestor of all vertebrates.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = vertebral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0011013.md b/md/UBERON/13/UBERON_0011013.md index e83aa2c49e..66d25065e1 100644 --- a/md/UBERON/13/UBERON_0011013.md +++ b/md/UBERON/13/UBERON_0011013.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011013 * *Label* = spinalis muscle - * *Definition* = The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinalis] + * *Definition* = The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinalis ] ## Synonyms - * spinal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002621] - * spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77179] + * spinal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002621 ] + * spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77179 ] * medial column of erector spinae - * musculus spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinalis] - * spinalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinalis] + * musculus spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinalis ] + * musculus spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinalis ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0011113.md b/md/UBERON/13/UBERON_0011113.md index 3397d99846..86e178a6de 100644 --- a/md/UBERON/13/UBERON_0011113.md +++ b/md/UBERON/13/UBERON_0011113.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011113 * *Label* = inferior tibiofibular joint - * *Definition* = The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus, Posterior ligament of the lateral malleolus, Inferior transverse ligament of the tibiofibular syndesmosis, Interosseous ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_tibiofibular_articulation] + * *Definition* = The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus, Posterior ligament of the lateral malleolus, Inferior transverse ligament of the tibiofibular syndesmosis, Interosseous ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_tibiofibular_articulation ] ## Synonyms - * distal tibiofibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10465] - * syndesmosis tibiofibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tibiofibular syndesmosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10465] - * inferior tibiofibular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_tibiofibular_articulation] + * distal tibiofibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10465 ] + * syndesmosis tibiofibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tibiofibular syndesmosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10465 ] + * inferior tibiofibular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_tibiofibular_articulation ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0011213.md b/md/UBERON/13/UBERON_0011213.md index 41b32a4788..21329a9cd8 100644 --- a/md/UBERON/13/UBERON_0011213.md +++ b/md/UBERON/13/UBERON_0011213.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011213 * *Label* = root of vagus nerve - * *Definition* = A root of cranial nerve that is part of a vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A root of cranial nerve that is part of a vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = FMA distinguishes between roots and rootlets - we mix the two here ## Synonyms - * rootlet of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6213] - * vagal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007011] - * vagus nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1456] - * vagus root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007011] - * rX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007011] - * vagus neural rootlet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6213] + * rootlet of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6213 ] + * vagal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007011 ] + * vagus nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1456 ] + * vagus root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007011 ] + * rX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007011 ] + * vagus neural rootlet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6213 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagus nerve](../../UBERON/59/UBERON_0001759.md) and [root of cranial nerve](../../UBERON/43/UBERON_0006843.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0011313.md b/md/UBERON/13/UBERON_0011313.md index 4e47a0f694..93f87f14de 100644 --- a/md/UBERON/13/UBERON_0011313.md +++ b/md/UBERON/13/UBERON_0011313.md @@ -6,7 +6,7 @@ ## Synonyms - * masseter, posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * masseter, posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The posterior masseter is a separable part of the deep masseter muscle that attaches to the postero-ventral surface of the zygomatic arch.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0011613.md b/md/UBERON/13/UBERON_0011613.md index a77155419d..ec2b21e628 100644 --- a/md/UBERON/13/UBERON_0011613.md +++ b/md/UBERON/13/UBERON_0011613.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011613 * *Label* = hypohyal element - * *Definition* = The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] + * *Definition* = The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0012113.md b/md/UBERON/13/UBERON_0012113.md index cfbe544dd4..778a5985e1 100644 --- a/md/UBERON/13/UBERON_0012113.md +++ b/md/UBERON/13/UBERON_0012113.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012113 * *Label* = bolus of food - * *Definition* = Ingested food contained in the esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78441[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bolus_(digestion)] + * *Definition* = Ingested food contained in the esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78441, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bolus_(digestion) ] ## Synonyms - * bolus of ingested food [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78441] - * food bolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78441] + * bolus of ingested food [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78441 ] + * food bolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78441 ] * bolus ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0012313.md b/md/UBERON/13/UBERON_0012313.md index 049275c5f0..b6e92f977f 100644 --- a/md/UBERON/13/UBERON_0012313.md +++ b/md/UBERON/13/UBERON_0012313.md @@ -6,7 +6,7 @@ ## Synonyms - * ectoderm of maxillary component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16389] + * ectoderm of maxillary component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16389 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012313 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0013113.md b/md/UBERON/13/UBERON_0013113.md index fafee3a928..38dd46d801 100644 --- a/md/UBERON/13/UBERON_0013113.md +++ b/md/UBERON/13/UBERON_0013113.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013113 * *Label* = angular/surangular bone - * *Definition* = Bone formed from the fusion of angular and surangular bones. Found in snakes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Bone formed from the fusion of angular and surangular bones. Found in snakes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0013213.md b/md/UBERON/13/UBERON_0013213.md index bb6f136fae..eb82d08c74 100644 --- a/md/UBERON/13/UBERON_0013213.md +++ b/md/UBERON/13/UBERON_0013213.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013213 * *Label* = ossicone - * *Definition* = Ossicones are horn-like protuberances on the heads of giraffes, male okapis, and their extinct relatives, such as Sivatherium, and the climacoceratids, such as Climacoceras. Only giraffids have true ossicones (as opposed to horns or antlers). The base that a deer's antlers grow from is very similar to ossicones. Ossicones are similar to the horns of antelopes and cattle, save that they are derived from ossified cartilage, and that the ossicones remain covered in skin and fur, rather than horn. Antlers (such as on deer) are derived from bone tissue: when mature, the skin and fur covering of the antlers, termed 'velvet,' is sloughed and scraped off to expose the bone of the antlers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossicone] + * *Definition* = Ossicones are horn-like protuberances on the heads of giraffes, male okapis, and their extinct relatives, such as Sivatherium, and the climacoceratids, such as Climacoceras. Only giraffids have true ossicones (as opposed to horns or antlers). The base that a deer's antlers grow from is very similar to ossicones. Ossicones are similar to the horns of antelopes and cattle, save that they are derived from ossified cartilage, and that the ossicones remain covered in skin and fur, rather than horn. Antlers (such as on deer) are derived from bone tissue: when mature, the skin and fur covering of the antlers, termed 'velvet,' is sloughed and scraped off to expose the bone of the antlers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossicone ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013213 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0013513.md b/md/UBERON/13/UBERON_0013513.md index c895110264..67a8fa5c8e 100644 --- a/md/UBERON/13/UBERON_0013513.md +++ b/md/UBERON/13/UBERON_0013513.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013513 * *Label* = anal pterya - * *Definition* = two row of feathers encircling the cloaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://caiquesite.com/glossary.htm] + * *Definition* = two row of feathers encircling the cloaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://caiquesite.com/glossary.htm ] ## Synonyms - * cloacal circlet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://caiquesite.com/glossary.htm] + * cloacal circlet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://caiquesite.com/glossary.htm ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [row of feathers](../../UBERON/12/UBERON_0013512.md) and [surrounds](../../RO/21/RO_0002221.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013513 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0013613.md b/md/UBERON/13/UBERON_0013613.md index ea9f64a63e..99a38e545f 100644 --- a/md/UBERON/13/UBERON_0013613.md +++ b/md/UBERON/13/UBERON_0013613.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013613 * *Label* = tooth cingulum - * *Definition* = A ridge that girdles the base of a upper molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/cingulum] + * *Definition* = A ridge that girdles the base of a upper molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/cingulum ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0013713.md b/md/UBERON/13/UBERON_0013713.md index ab87507764..f0790dcbe6 100644 --- a/md/UBERON/13/UBERON_0013713.md +++ b/md/UBERON/13/UBERON_0013713.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013713 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0014613.md b/md/UBERON/13/UBERON_0014613.md index 58c2452fbd..b333ce17ea 100644 --- a/md/UBERON/13/UBERON_0014613.md +++ b/md/UBERON/13/UBERON_0014613.md @@ -6,13 +6,13 @@ ## Synonyms - * cervical spinal cord gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1521[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * cervical spinal cord gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1521, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_1521 * SCTID:362438009 - * UMLS:C0228610 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1521] + * UMLS:C0228610 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1521 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of spinal cord](../../UBERON/15/UBERON_0002315.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014613 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0014913.md b/md/UBERON/13/UBERON_0014913.md index 1d3858a508..7a698c8228 100644 --- a/md/UBERON/13/UBERON_0014913.md +++ b/md/UBERON/13/UBERON_0014913.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014913 * *Label* = ventral pallium - * *Definition* = the pallial region located next to the pallium-subpallium boundary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1371/journal.pone.0044716] + * *Definition* = the pallial region located next to the pallium-subpallium boundary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1371/journal.pone.0044716 ] ## Synonyms - * VP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * VP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014913 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0015013.md b/md/UBERON/13/UBERON_0015013.md index e30feba528..c73cb44825 100644 --- a/md/UBERON/13/UBERON_0015013.md +++ b/md/UBERON/13/UBERON_0015013.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015013 * *Label* = fibula endochondral element - * *Definition* = A fibula bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A fibula bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * fibula element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * fibula skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * fibula element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * fibula skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [fibula cartilage element](../../UBERON/51/UBERON_0010851.md)or[fibula pre-cartilage condensation](../../UBERON/52/UBERON_0010852.md)or[fibula](../../UBERON/46/UBERON_0001446.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_0015113.md b/md/UBERON/13/UBERON_0015113.md index d8e703559b..ead22e7b15 100644 --- a/md/UBERON/13/UBERON_0015113.md +++ b/md/UBERON/13/UBERON_0015113.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone 4 endochondral element](../../UBERON/11/UBERON_0015111.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_1000013.md b/md/UBERON/13/UBERON_1000013.md index c38afc83c8..c4df7c18f5 100644 --- a/md/UBERON/13/UBERON_1000013.md +++ b/md/UBERON/13/UBERON_1000013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000013 * *Label* = nose vertex - * *Definition* = The extreme point of curvature of the external nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = The extreme point of curvature of the external nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000013 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2000313.md b/md/UBERON/13/UBERON_2000313.md index fe5c3288ce..e5ffb0b4a1 100644 --- a/md/UBERON/13/UBERON_2000313.md +++ b/md/UBERON/13/UBERON_2000313.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2000513.md b/md/UBERON/13/UBERON_2000513.md index 0d64642935..8caf736a12 100644 --- a/md/UBERON/13/UBERON_2000513.md +++ b/md/UBERON/13/UBERON_2000513.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000513[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000513, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/13/UBERON_2000813.md b/md/UBERON/13/UBERON_2000813.md index 6799b243ff..39ce76f076 100644 --- a/md/UBERON/13/UBERON_2000813.md +++ b/md/UBERON/13/UBERON_2000813.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000813 * *Label* = infraorbital lateral line neuromast - * *Definition* = Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast infraorbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000813] - * neuromasts infraorbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000813[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * neuromast infraorbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000813 ] + * neuromasts infraorbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000813, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2000913.md b/md/UBERON/13/UBERON_2000913.md index c7a06531a8..b22022d221 100644 --- a/md/UBERON/13/UBERON_2000913.md +++ b/md/UBERON/13/UBERON_2000913.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001013.md b/md/UBERON/13/UBERON_2001013.md index dd30c9af45..1606593c67 100644 --- a/md/UBERON/13/UBERON_2001013.md +++ b/md/UBERON/13/UBERON_2001013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001013 * *Label* = myotome somite 10 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001313.md b/md/UBERON/13/UBERON_2001313.md index 9286737379..62c1857545 100644 --- a/md/UBERON/13/UBERON_2001313.md +++ b/md/UBERON/13/UBERON_2001313.md @@ -6,7 +6,7 @@ ## Synonyms - * anteroventral lateral line ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001313] + * anteroventral lateral line ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001313 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001613.md b/md/UBERON/13/UBERON_2001613.md index e69c3f9d4a..d7055774d8 100644 --- a/md/UBERON/13/UBERON_2001613.md +++ b/md/UBERON/13/UBERON_2001613.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001613 * *Label* = dorsal fin middle radial bone - * *Definition* = dorsal fin middle radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin middle radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Synonym dorsal fin medial radial from Weitzman, 1962. ## Synonyms - * dorsal fin medial radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001613] + * dorsal fin medial radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001613 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin middle radial element](../../UBERON/13/UBERON_2101613.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001713.md b/md/UBERON/13/UBERON_2001713.md index d03fa81a80..36e51b79e9 100644 --- a/md/UBERON/13/UBERON_2001713.md +++ b/md/UBERON/13/UBERON_2001713.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001713 * *Label* = caudal principal ray 1 - * *Definition* = Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001813.md b/md/UBERON/13/UBERON_2001813.md index 7ba3776e3f..5999356675 100644 --- a/md/UBERON/13/UBERON_2001813.md +++ b/md/UBERON/13/UBERON_2001813.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001813 * *Label* = preopercular sensory canal - * *Definition* = Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with the otic and post-otic sensory canals at their union. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2001913.md b/md/UBERON/13/UBERON_2001913.md index 90f6438307..e7ec972b4b 100644 --- a/md/UBERON/13/UBERON_2001913.md +++ b/md/UBERON/13/UBERON_2001913.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001913 * *Label* = pharyngobranchial 4 element - * *Definition* = Most posterior pharyngobranchial element, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Most posterior pharyngobranchial element, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 4 element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001913] + * infrapharyngobranchial 4 element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001913 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2002013.md b/md/UBERON/13/UBERON_2002013.md index fb12120f7d..a26916b692 100644 --- a/md/UBERON/13/UBERON_2002013.md +++ b/md/UBERON/13/UBERON_2002013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002013 * *Label* = ascending limb of ceratobranchial 5 bone - * *Definition* = Process that is the dorsally directed portion of ceratobranchial 5 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the dorsally directed portion of ceratobranchial 5 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = An ascending limb of the ceratobranchial is found in Cypriniformes. ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2002213.md b/md/UBERON/13/UBERON_2002213.md index ed2ab2171e..22c8d8afe1 100644 --- a/md/UBERON/13/UBERON_2002213.md +++ b/md/UBERON/13/UBERON_2002213.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002213 * *Label* = obsolete optic nerve head - * *Definition* = Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = removed axiom: part_of some 'cranial nerve II' ## Synonyms - * optic nerve heads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002213[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * optic nerve heads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002213, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001783 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/13/UBERON_2005013.md b/md/UBERON/13/UBERON_2005013.md index 41bd9edcc4..83efa91559 100644 --- a/md/UBERON/13/UBERON_2005013.md +++ b/md/UBERON/13/UBERON_2005013.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005013 * *Label* = concurrent branch afferent branchial artery - * *Definition* = The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * CCB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005013] + * CCB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005013 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2005113.md b/md/UBERON/13/UBERON_2005113.md index 41cabf1c7d..407ec3fba5 100644 --- a/md/UBERON/13/UBERON_2005113.md +++ b/md/UBERON/13/UBERON_2005113.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005113 * *Label* = dorsal lateral line neuromast - * *Definition* = Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast dorsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005113] + * neuromast dorsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005113 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromast](../../UBERON/04/UBERON_0008904.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal lateral line](../../UBERON/95/UBERON_0003095.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2005113 + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2005213.md b/md/UBERON/13/UBERON_2005213.md index 4937476d0b..aaf58f0e89 100644 --- a/md/UBERON/13/UBERON_2005213.md +++ b/md/UBERON/13/UBERON_2005213.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon lateral rostral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005213] + * mesencephalon lateral rostral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005213 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/13/UBERON_2007013.md b/md/UBERON/13/UBERON_2007013.md index b82f41f0f5..ad92ba33d0 100644 --- a/md/UBERON/13/UBERON_2007013.md +++ b/md/UBERON/13/UBERON_2007013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007013 * *Label* = preplacodal ectoderm - * *Definition* = Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2101613.md b/md/UBERON/13/UBERON_2101613.md index 417dfdeb12..2022b00fe2 100644 --- a/md/UBERON/13/UBERON_2101613.md +++ b/md/UBERON/13/UBERON_2101613.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101613 * *Label* = dorsal fin middle radial element - * *Definition* = Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dorsal fin radial element that is the rod-like internal median skeletal support element of the dorsal fin located between the dorsal fin proximal radial element and dorsal fin distal radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonym dorsal fin medial radial from Weitzman, 1962. ## Synonyms - * dorsal fin medial radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001613] + * dorsal fin medial radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001613 ] ## Cross-references @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_2201613.md b/md/UBERON/13/UBERON_2201613.md index 5a871dae3f..9ba1216e6e 100644 --- a/md/UBERON/13/UBERON_2201613.md +++ b/md/UBERON/13/UBERON_2201613.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201613 * *Label* = dorsal fin middle radial cartilage - * *Definition* = dorsal fin middle radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin middle radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Synonym dorsal fin medial radial from Weitzman, 1962. ## Synonyms - * dorsal fin medial radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001613] + * dorsal fin medial radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001613 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin middle radial element](../../UBERON/13/UBERON_2101613.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3000113.md b/md/UBERON/13/UBERON_3000113.md index b3e20bd089..503f4d1e5d 100644 --- a/md/UBERON/13/UBERON_3000113.md +++ b/md/UBERON/13/UBERON_3000113.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000113 * *Label* = crista intermedia - * *Definition* = Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3000413.md b/md/UBERON/13/UBERON_3000413.md index 8061925837..58569448d1 100644 --- a/md/UBERON/13/UBERON_3000413.md +++ b/md/UBERON/13/UBERON_3000413.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000413 * *Label* = pars palatina of maxilla - * *Definition* = Lingual ledge on the inner surface of the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lingual ledge on the inner surface of the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * lamina horizontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000413] + * lamina horizontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000413 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3000713.md b/md/UBERON/13/UBERON_3000713.md index eaea7202c2..c01780d74c 100644 --- a/md/UBERON/13/UBERON_3000713.md +++ b/md/UBERON/13/UBERON_3000713.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000713 * *Label* = epichordal - * *Definition* = Vertebral centrum that originates from ossification of the dorsal portion of the perichordal tube; the resulting element tends to be depressed in cross section. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Kluge_and_Farris_1969] + * *Definition* = Vertebral centrum that originates from ossification of the dorsal portion of the perichordal tube; the resulting element tends to be depressed in cross section. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Kluge_and_Farris_1969 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3000813.md b/md/UBERON/13/UBERON_3000813.md index 2ecfb68b51..03c92021c4 100644 --- a/md/UBERON/13/UBERON_3000813.md +++ b/md/UBERON/13/UBERON_3000813.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000813 * *Label* = sulcus pro cartilagine praecoracoidealis - * *Definition* = Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010013.md b/md/UBERON/13/UBERON_3010013.md index 191f5bfa49..a45f4727b0 100644 --- a/md/UBERON/13/UBERON_3010013.md +++ b/md/UBERON/13/UBERON_3010013.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010013 * *Label* = larval chondrocranium - * *Definition* = Cartilaginous larval skull. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cartilaginous larval skull. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010113.md b/md/UBERON/13/UBERON_3010113.md index df812f1448..b36b71a92b 100644 --- a/md/UBERON/13/UBERON_3010113.md +++ b/md/UBERON/13/UBERON_3010113.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010113 * *Label* = musculus rectus medialis - * *Definition* = Cranial nerve III innervated; medial in the rectus group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cranial nerve III innervated; medial in the rectus group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010313.md b/md/UBERON/13/UBERON_3010313.md index ac25a3904b..af4008f7cc 100644 --- a/md/UBERON/13/UBERON_3010313.md +++ b/md/UBERON/13/UBERON_3010313.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010313 * *Label* = obsolete myoblast - * *Definition* = Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000056 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/13/UBERON_3010413.md b/md/UBERON/13/UBERON_3010413.md index c637f046be..0409a229e4 100644 --- a/md/UBERON/13/UBERON_3010413.md +++ b/md/UBERON/13/UBERON_3010413.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010613.md b/md/UBERON/13/UBERON_3010613.md index d2e1e9cd1a..ee0d1ccde4 100644 --- a/md/UBERON/13/UBERON_3010613.md +++ b/md/UBERON/13/UBERON_3010613.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010613 * *Label* = laryngo-tracheal chamber - * *Definition* = Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010713.md b/md/UBERON/13/UBERON_3010713.md index 59c51cc9ea..e08d49fb08 100644 --- a/md/UBERON/13/UBERON_3010713.md +++ b/md/UBERON/13/UBERON_3010713.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010713 * *Label* = m. sternoepicoracoideus - * *Definition* = Muscle which originates on the anterior border of the distal part of the sternal horn and inserts antero-medially on the postero-dorsal surface of the epicoracoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates on the anterior border of the distal part of the sternal horn and inserts antero-medially on the postero-dorsal surface of the epicoracoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_3010813.md b/md/UBERON/13/UBERON_3010813.md index e3f02712d2..4fb34294e3 100644 --- a/md/UBERON/13/UBERON_3010813.md +++ b/md/UBERON/13/UBERON_3010813.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_4000013.md b/md/UBERON/13/UBERON_4000013.md index fe0e0a6d16..2393314232 100644 --- a/md/UBERON/13/UBERON_4000013.md +++ b/md/UBERON/13/UBERON_4000013.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_4100013.md b/md/UBERON/13/UBERON_4100013.md index 3772e53896..4485cfe837 100644 --- a/md/UBERON/13/UBERON_4100013.md +++ b/md/UBERON/13/UBERON_4100013.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_4200013.md b/md/UBERON/13/UBERON_4200013.md index ba044992eb..6f39d768c0 100644 --- a/md/UBERON/13/UBERON_4200013.md +++ b/md/UBERON/13/UBERON_4200013.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_4200113.md b/md/UBERON/13/UBERON_4200113.md index 4d7633d743..7ab4579b88 100644 --- a/md/UBERON/13/UBERON_4200113.md +++ b/md/UBERON/13/UBERON_4200113.md @@ -26,7 +26,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/13/UBERON_4300013.md b/md/UBERON/13/UBERON_4300013.md index 7dd442d9e2..e2b73e8de6 100644 --- a/md/UBERON/13/UBERON_4300013.md +++ b/md/UBERON/13/UBERON_4300013.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fin radial skeleton](../../UBERON/08/UBERON_4440008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0000014.md b/md/UBERON/14/UBERON_0000014.md index c90b82052a..06e8aba8e9 100644 --- a/md/UBERON/14/UBERON_0000014.md +++ b/md/UBERON/14/UBERON_0000014.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000014 * *Label* = zone of skin - * *Definition* = A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skin] + * *Definition* = A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skin ] * *Comment* = we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive ## Synonyms * portion of skin * region of skin - * skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000151] + * skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000151 ] * skin region * skin zone @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) it is well-established that neural crest cells contribute to both the dermal skeleton (craniofacial bone, teeth, and the caudal fin rays of teleosts) and the integument, including craniofacial dermis and all pigment cells outside the retina (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0000114.md b/md/UBERON/14/UBERON_0000114.md index ede768b8eb..e3f71ed99b 100644 --- a/md/UBERON/14/UBERON_0000114.md +++ b/md/UBERON/14/UBERON_0000114.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000114 * *Label* = lung connective tissue - * *Definition* = A portion of connective tissue that is part of a lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung interstitial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001782] + * connective tissue of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung interstitial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001782 ] * lung interstitium ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0000314.md b/md/UBERON/14/UBERON_0000314.md index 5fd5a42b32..dff798942f 100644 --- a/md/UBERON/14/UBERON_0000314.md +++ b/md/UBERON/14/UBERON_0000314.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000314 * *Label* = cecum mucosa - * *Definition* = A mucosa that is part of a cecum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a cecum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Cecal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14998] - * caecum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cecum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cecum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cecum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinum crassum caecum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinum crassum caecum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinum crassum caecum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinum crassum caecum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of intestinum crassum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of intestinum crassum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of intestinum crassum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of intestinum crassum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Cecal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14998 ] + * caecum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cecum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cecum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cecum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinum crassum caecum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinum crassum caecum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinum crassum caecum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinum crassum caecum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of intestinum crassum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of intestinum crassum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of intestinum crassum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of intestinum crassum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0000414.md b/md/UBERON/14/UBERON_0000414.md index 5be1976ee5..9647d8b404 100644 --- a/md/UBERON/14/UBERON_0000414.md +++ b/md/UBERON/14/UBERON_0000414.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000414 * *Label* = mucous gland - * *Definition* = A gland in which the principal secretory cells are mucus secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = A gland in which the principal secretory cells are mucus secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms - * glandula mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucous_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * muciparous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001979] + * glandula mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucous_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * muciparous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001979 ] * mucous secreting gland * mucus gland @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [has_part](../../BFO/51/BFO_0000051.md) some [mucus secreting cell](../../CL/19/CL_0000319.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In frogs and salamanders, this is the smaller of the two types of gland, the other being the granular (poison) gland. In these species the mucous gland is a cluster of cells that release secretion into a common duct[Kardong] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0000914.md b/md/UBERON/14/UBERON_0000914.md index 192c47df7c..591b40c442 100644 --- a/md/UBERON/14/UBERON_0000914.md +++ b/md/UBERON/14/UBERON_0000914.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000914 * *Label* = organismal segment - * *Definition* = One of the repeated divisions of the whole organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Segmentation_(biology)] + * *Definition* = One of the repeated divisions of the whole organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Segmentation_(biology) ] * *Comment* = editor note: review this post-CARO2 ## Synonyms - * segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00000003] + * segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00000003 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001014.md b/md/UBERON/14/UBERON_0001014.md index e5945d7bfe..6e6813c313 100644 --- a/md/UBERON/14/UBERON_0001014.md +++ b/md/UBERON/14/UBERON_0001014.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0003917 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001014 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_0001114.md b/md/UBERON/14/UBERON_0001114.md index ca6ef00025..dc7370f06e 100644 --- a/md/UBERON/14/UBERON_0001114.md +++ b/md/UBERON/14/UBERON_0001114.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001114 * *Label* = right lobe of liver - * *Definition* = The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three foss: the porta and the foss for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_lobe_of_liver] + * *Definition* = The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three foss: the porta and the foss for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_lobe_of_liver ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * liver right lobe - * lobus hepaticus dexter [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * right liver lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005173] - * 2nd lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005173] - * gall bladder lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005173[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lobus hepatis dexter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_lobe_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * second lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005173] + * lobus hepaticus dexter [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * right liver lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005173 ] + * 2nd lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005173 ] + * gall bladder lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005173, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lobus hepatis dexter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_lobe_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * second lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005173 ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0000363 * SCTID:362182008 * TAO:0005173 - * UMLS:C0227481 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lobe_of_the_Liver] + * UMLS:C0227481 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lobe_of_the_Liver ] * VHOG:0001424 * Wikipedia:Right_lobe_of_liver * ZFA:0005173 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the liver which develops on the fish's right side adjacent to the gall bladder.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001214.md b/md/UBERON/14/UBERON_0001214.md index b4b4d3a938..09da6df5e8 100644 --- a/md/UBERON/14/UBERON_0001214.md +++ b/md/UBERON/14/UBERON_0001214.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001214 * *Label* = pancreatic tributary of splenic vein - * *Definition* = The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_vein] + * *Definition* = The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_vein ] * *Comment* = AO notes: see also MA:0002165 ## Synonyms @@ -15,7 +15,7 @@ * FMA:15388 * MA:0002189 * SCTID:264492008 - * UMLS:C0226743 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Vein] + * UMLS:C0226743 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Vein ] * Wikipedia:Pancreatic_vein * ncithesaurus:Pancreatic_Vein @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001314.md b/md/UBERON/14/UBERON_0001314.md index fe0b348972..5de26d3646 100644 --- a/md/UBERON/14/UBERON_0001314.md +++ b/md/UBERON/14/UBERON_0001314.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001314 * *Label* = obturator artery - * *Definition* = The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_artery] + * *Definition* = The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria obturatoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria obturatoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18865 * MA:0002008 * SCTID:244302006 - * UMLS:C0226369 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Artery] + * UMLS:C0226369 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Artery ] * Wikipedia:Obturator_artery * http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray547.png/200px-Gray547.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001414.md b/md/UBERON/14/UBERON_0001414.md index 43c849eaab..b11f539b9a 100644 --- a/md/UBERON/14/UBERON_0001414.md +++ b/md/UBERON/14/UBERON_0001414.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001414 * *Label* = median cubital vein - * *Definition* = In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_cubital_vein] + * *Definition* = In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_cubital_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena mediana cubiti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_cubital_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena mediana cubiti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_cubital_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001514.md b/md/UBERON/14/UBERON_0001514.md index b09a4900fb..70942bd402 100644 --- a/md/UBERON/14/UBERON_0001514.md +++ b/md/UBERON/14/UBERON_0001514.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001514 * *Label* = descending aorta - * *Definition* = The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035906[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_aorta] + * *Definition* = The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035906, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_aorta ] * *Comment* = Development notes: results from fusion of left and right dorsal aortae ## Synonyms - * pars descendens aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3784] - * aorta descendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aorta descendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_aorta] - * pars descendens aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars descendens aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3784 ] + * aorta descendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_aorta ] + * aorta descendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars descendens aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002571 * OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA * SCTID:261399002 - * UMLS:C0011666 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Descending_Aorta] + * UMLS:C0011666 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Descending_Aorta ] * Wikipedia:Descending_aorta * http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001614.md b/md/UBERON/14/UBERON_0001614.md index ae9b32c281..6ba692d07c 100644 --- a/md/UBERON/14/UBERON_0001614.md +++ b/md/UBERON/14/UBERON_0001614.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001614 * *Label* = superficial temporal artery - * *Definition* = In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_temporal_artery] + * *Definition* = In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_temporal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria temporalis superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_temporal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria temporalis superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_temporal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001714.md b/md/UBERON/14/UBERON_0001714.md index 50c3ccf569..26457168ee 100644 --- a/md/UBERON/14/UBERON_0001714.md +++ b/md/UBERON/14/UBERON_0001714.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001714 * *Label* = cranial ganglion - * *Definition* = Ganglion of a cranial nerve[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_nerve_ganglion] + * *Definition* = Ganglion of a cranial nerve[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_nerve_ganglion ] * *Comment* = Editor note: split out MA ter,. Note the MA term is part of the CNS. This needs to be checked w.r.t relationship between ganglia and the PNS, as the PNS and CNS are spatially disjoint. also meaning of MA term is not clear (appears to be union of nerve and ganglion, but MA 'cranial nerve' is unconnected) ## Synonyms @@ -12,12 +12,12 @@ * cranial ganglion/nerve * cranial nerve ganglion * cranial neural ganglion - * cranial neural tree organ ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54502] - * ganglion of cranial neural tree organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cranial neural tree organ ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54502 ] + * ganglion of cranial neural tree organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * cranial ganglia * head ganglion - * presumptive cranial ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000013] + * presumptive cranial ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000013 ] ## Cross-references @@ -46,11 +46,11 @@ * [ganglion](../../UBERON/45/UBERON_0000045.md) * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cranial nerve](../../UBERON/85/UBERON_0001785.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cranial nerve](../../UBERON/85/UBERON_0001785.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ganglion which is located in the head.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003213 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001814.md b/md/UBERON/14/UBERON_0001814.md index e179e9805a..a1b6a53670 100644 --- a/md/UBERON/14/UBERON_0001814.md +++ b/md/UBERON/14/UBERON_0001814.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001814 * *Label* = brachial nerve plexus - * *Definition* = The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_plexus] + * *Definition* = The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_plexus ] * *Comment* = check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus' ## Synonyms - * brachial plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001180] - * brachium pontis (stem of middle cerebellar peduncle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:bp] - * plexus brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_plexus] + * brachial plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001180 ] + * brachium pontis (stem of middle cerebellar peduncle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:bp ] + * plexus brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_plexus ] + * plexus brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A08.800.800.720.050 * OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA * SCTID:181002002 - * UMLS:C0006090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brachial_Plexus] + * UMLS:C0006090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brachial_Plexus ] * VHOG:0000372 * Wikipedia:Brachial_plexus * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray808.png/200px-Gray808.png @@ -39,7 +39,7 @@ ## Superclasses * [somatic nerve plexus](../../UBERON/13/UBERON_0001813.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Equivalencies @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A nerve plexus originating from the anterior branches of the last four cervical and the first thoracic spinal nerves, giving off many of the principal nerves of the shoulder, chest, and arms. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0001914.md b/md/UBERON/14/UBERON_0001914.md index b73f78b3cd..2f96f3588f 100644 --- a/md/UBERON/14/UBERON_0001914.md +++ b/md/UBERON/14/UBERON_0001914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001914 * *Label* = colostrum - * *Definition* = The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.200.194[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Colostrum] + * *Definition* = The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.200.194, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Colostrum ] * *Comment* = AO notes: we follow in MA in making this is a sib of mammary gland milk, rather than a subclass. ## Synonyms @@ -17,7 +17,7 @@ * GAID:1159 * MA:0002551 * MESH:A12.200.194 - * UMLS:C0009413 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Colostrum] + * UMLS:C0009413 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Colostrum ] * Wikipedia:Colostrum * ncithesaurus:Colostrum @@ -39,8 +39,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = colostral - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002014.md b/md/UBERON/14/UBERON_0002014.md index dc647ea74f..97bfd7e89f 100644 --- a/md/UBERON/14/UBERON_0002014.md +++ b/md/UBERON/14/UBERON_0002014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002014 * *Label* = inferior hypogastric nerve plexus - * *Definition* = The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_hypogastric_plexus] + * *Definition* = The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_hypogastric_plexus ] * *Comment* = Check relationship with generic hypogastric nerve/plexus ## Synonyms @@ -11,10 +11,10 @@ * inferior hypogastric plexus * pelvic nerve plexus * pelvic plexus - * plexus hypogastricus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6643[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus nervosus pelvicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6643[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus pelvicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6643[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus hypogastricus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_hypogastric_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus hypogastricus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6643, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus nervosus pelvicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6643, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus pelvicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6643, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus hypogastricus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_hypogastric_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:6643 * MA:0001141 * SCTID:192608000 - * UMLS:C0205797 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Hypogastric_Nerve_Plexus] + * UMLS:C0205797 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Hypogastric_Nerve_Plexus ] * Wikipedia:Inferior_hypogastric_plexus * http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png @@ -35,7 +35,7 @@ ## Superclasses * [autonomic nerve plexus](../../UBERON/16/UBERON_0001816.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hypogastric nerve](../../UBERON/03/UBERON_0005303.md) ## Equivalencies @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002114.md b/md/UBERON/14/UBERON_0002114.md index 7c3ae846bf..9fa3f6d81a 100644 --- a/md/UBERON/14/UBERON_0002114.md +++ b/md/UBERON/14/UBERON_0002114.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002114 * *Label* = duodenum - * *Definition* = The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Duodenum] + * *Definition* = The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Duodenum ] ## Synonyms - * proximal intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000365] - * upper intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000365] + * proximal intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000365 ] + * upper intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000365 ] ## Cross-references @@ -26,7 +26,7 @@ * MIAA:0000044 * OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA * SCTID:181247007 - * UMLS:C0013303 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Duodenum] + * UMLS:C0013303 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Duodenum ] * VHOG:0000052 * Wikipedia:Duodenum * XAO:0000236 @@ -61,8 +61,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In humans, the duodenum is a hollow jointed tube about 1015 inches (2538 centimetres) long connecting the stomach to the jejunum. It begins with the duodenal bulb and ends at the ligament of Treitz. * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002214.md b/md/UBERON/14/UBERON_0002214.md index 1cd310fcca..a0c373fc14 100644 --- a/md/UBERON/14/UBERON_0002214.md +++ b/md/UBERON/14/UBERON_0002214.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002214 * *Label* = macula of utricle of membranous labyrinth - * *Definition* = The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_of_utricle] + * *Definition* = The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_of_utricle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * macula of membranous labyrinth utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * macula of membranous labyrinth utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * macula of utricle - * macula of utriculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * macula utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000030] - * macula utriculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * membranous labyrinth utricle macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle of membranous labyrinth macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utriculus (labyrinthus vestibularis) macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * macula utriculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_of_utricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * macula of utriculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * macula utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000030 ] + * macula utriculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * membranous labyrinth utricle macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle of membranous labyrinth macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utriculus (labyrinthus vestibularis) macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * macula utriculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_of_utricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * utricular macula ## Cross-references @@ -27,7 +27,7 @@ * MA:0001203 * SCTID:362568003 * TAO:0000030 - * UMLS:C0229451 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Macula_of_Utricle] + * UMLS:C0229451 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Macula_of_Utricle ] * Wikipedia:Macula_of_utricle * ZFA:0000030 * http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula](../../UBERON/54/UBERON_0000054.md) and [part_of](../../BFO/50/BFO_0000050.md) some [utricle of membranous labyrinth](../../UBERON/53/UBERON_0001853.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002314.md b/md/UBERON/14/UBERON_0002314.md index b9fef61183..0f4788c26b 100644 --- a/md/UBERON/14/UBERON_0002314.md +++ b/md/UBERON/14/UBERON_0002314.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002314 * *Label* = midbrain tectum - * *Definition* = Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1032] + * *Definition* = Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1032 ] * *Comment* = In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. ## Synonyms - * mesencephalic tectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000445] + * mesencephalic tectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000445 ] * neuraxis tectum * tectum - * tectum mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001793] - * t. mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midbrain_tectum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tectum mesencephalicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:465[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tectum of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:465] + * tectum mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001793 ] + * t. mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midbrain_tectum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tectum mesencephalicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:465, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tectum of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:465 ] ## Cross-references @@ -29,11 +29,11 @@ * MA:0000211 * MAT:0000451 * NIF_GrossAnatomy:birnlex_1032 - * NeuroNames:465 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1032] + * NeuroNames:465 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1032 ] * SCTID:362394008 * TAO:0001353 - * UMLS:C0039433 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1032] - * UMLS:C0039433 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tectum_Mesencephali] + * UMLS:C0039433 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1032 ] + * UMLS:C0039433 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tectum_Mesencephali ] * VHOG:0001388 * Wikipedia:Midbrain_tectum * http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png @@ -61,8 +61,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tectum - a multisensory, topologically mapped structure in the roof of the midbrain presents a remarkable degree of conservation in all vertebrate radiations; although it varies in the extent of its development in different vertebrate classes, there is considerable evidence now to deem its layered structure, its cell types, and its hodological pattern as homologous in all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002414.md b/md/UBERON/14/UBERON_0002414.md index e6d63429f3..685116a090 100644 --- a/md/UBERON/14/UBERON_0002414.md +++ b/md/UBERON/14/UBERON_0002414.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002414 * *Label* = lumbar vertebra - * *Definition* = Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_vertebrae] + * *Definition* = Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_vertebrae ] * *Comment* = Whereas all rats had six lumbar vertebrae, variable patterns in mice included mostly five vertebrae in DBA/2J, mostly six vertebrae in C57BL/6J, and a mix in B6129PF2/J - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/ ## Synonyms @@ -19,7 +19,7 @@ * MESH:A02.835.232.834.519 * OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA * SCTID:181822002 - * UMLS:C0024091 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Vertebra] + * UMLS:C0024091 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Vertebra ] * Wikipedia:Lumbar_vertebrae * galen:LumbarVertebra * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar region of vertebral column](../../UBERON/74/UBERON_0006074.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002514.md b/md/UBERON/14/UBERON_0002514.md index 7adf15c3df..26b91a30f7 100644 --- a/md/UBERON/14/UBERON_0002514.md +++ b/md/UBERON/14/UBERON_0002514.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002514 * *Label* = intramembranous bone - * *Definition* = Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001957[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intramembranous_ossification] + * *Definition* = Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001957, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intramembranous_ossification ] ## Synonyms - * membrane bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000085] + * membrane bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000085 ] ## Cross-references @@ -34,8 +34,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bone that forms directly within mesenchyme, and does not replace other tissues.[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = [In TAO], This term was made obsolete because it is considered a synonym of membrane bone (VSAO:0000023).[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002614.md b/md/UBERON/14/UBERON_0002614.md index c6208e92a4..b834b3cf70 100644 --- a/md/UBERON/14/UBERON_0002614.md +++ b/md/UBERON/14/UBERON_0002614.md @@ -6,18 +6,18 @@ ## Synonyms - * nucleus ventralis lateralis thalami, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1159] - * nucleus ventrooralis medialis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1159] - * ventral lateral nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62195] - * ventral medial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62195] - * ventral medial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1159] - * VLM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1159[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medial part of the ventral lateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:340] - * nucleus ventralis lateralis, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:340[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral medial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VM] - * ventromedial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VM] - * ventromedial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VM] - * ventromedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VM] + * nucleus ventralis lateralis thalami, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1159 ] + * nucleus ventrooralis medialis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1159 ] + * ventral lateral nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62195 ] + * ventral medial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62195 ] + * ventral medial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1159 ] + * VLM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1159, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medial part of the ventral lateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:340 ] + * nucleus ventralis lateralis, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:340, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral medial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VM ] + * ventromedial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VM ] + * ventromedial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VM ] + * ventromedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VM ] ## Cross-references @@ -27,8 +27,8 @@ * BM:Die-Th-VM * FMA:62195 * NIF_GrossAnatomy:birnlex_1159 - * NeuroNames:340 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1159] - * UMLS:C0175282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1159] + * NeuroNames:340 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1159 ] + * UMLS:C0175282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1159 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002714.md b/md/UBERON/14/UBERON_0002714.md index a564f2c6e8..3f7e2fcaf9 100644 --- a/md/UBERON/14/UBERON_0002714.md +++ b/md/UBERON/14/UBERON_0002714.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002714 * *Label* = rubrospinal tract - * *Definition* = long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rubrospinal_tract] + * *Definition* = long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rubrospinal_tract ] ## Synonyms - * Monakow's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72640] - * rubrospinal tract (Monakow) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1476] - * tractus rubrospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rubrospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Monakow's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72640 ] + * rubrospinal tract (Monakow) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1476 ] + * tractus rubrospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rubrospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,9 +17,9 @@ * BAMS:rust * FMA:72640 * NIF_GrossAnatomy:birnlex_1476 - * NeuroNames:806 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1476] + * NeuroNames:806 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1476 ] * SCTID:369264001 - * UMLS:C0152377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1476] + * UMLS:C0152377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1476 ] * Wikipedia:Rubrospinal_tract * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002814.md b/md/UBERON/14/UBERON_0002814.md index 02fbf62665..f072ec5bae 100644 --- a/md/UBERON/14/UBERON_0002814.md +++ b/md/UBERON/14/UBERON_0002814.md @@ -6,13 +6,13 @@ ## Synonyms - * fissura post clivalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83733[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * post-clival fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83733] - * postclival fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83733] - * posterior superior fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83733] - * postlunate fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83733] + * fissura post clivalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83733, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * post-clival fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83733 ] + * postclival fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83733 ] + * posterior superior fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83733 ] + * postlunate fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83733 ] * superior posterior cerebellar fissure - * posterior superior fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081254] + * posterior superior fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081254 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0002914.md b/md/UBERON/14/UBERON_0002914.md index 6d2ca05c9e..02452498a1 100644 --- a/md/UBERON/14/UBERON_0002914.md +++ b/md/UBERON/14/UBERON_0002914.md @@ -6,8 +6,8 @@ ## Synonyms - * sulcus postcentralis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4032] - * ipcs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4032[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus postcentralis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4032 ] + * ipcs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4032, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -15,8 +15,8 @@ * BAMS:poci * FMA:83776 * NIF_GrossAnatomy:birnlex_4032 - * NeuroNames:101 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4032] - * UMLS:C0262256 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4032] + * NeuroNames:101 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4032 ] + * UMLS:C0262256 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4032 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003114.md b/md/UBERON/14/UBERON_0003114.md index 404d10b8ce..818cf68d64 100644 --- a/md/UBERON/14/UBERON_0003114.md +++ b/md/UBERON/14/UBERON_0003114.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003114 * *Label* = pharyngeal arch 3 - * *Definition* = The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006339] + * *Definition* = The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006339 ] * *Comment* = in XAO, called branchial arch 1 and df VP3 ## Synonyms * 3rd pharyngeal arch - * first gill arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * gill arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * first gill arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * gill arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * third pharyngeal arch * third visceral arch * visceral arch 3 - * 3rd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000069] - * 3rd visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000298] - * branchial arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * first branchial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 3rd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000069 ] + * 3rd visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000298 ] + * branchial arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * first branchial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 3 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003214.md b/md/UBERON/14/UBERON_0003214.md index ad284f002a..d6132c5ef0 100644 --- a/md/UBERON/14/UBERON_0003214.md +++ b/md/UBERON/14/UBERON_0003214.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003214 * *Label* = mammary gland alveolus - * *Definition* = a sac-like structure that is found in the mature gland[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060749] + * *Definition* = a sac-like structure that is found in the mature gland[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060749 ] ## Synonyms - * alveolus of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * alveolus of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * alveolus of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * alveolus of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolus of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * alveolus of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * alveolus of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * alveolus of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lactiferous alveolus * lactiferous gland alveolus - * lobe of breast alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lobe of breast alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mammary alveolus - * mammary alveoli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mammary alveoli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolus](../../UBERON/15/UBERON_0003215.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003314.md b/md/UBERON/14/UBERON_0003314.md index 95932a3f18..d266af00f8 100644 --- a/md/UBERON/14/UBERON_0003314.md +++ b/md/UBERON/14/UBERON_0003314.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003314 * *Label* = eye mesenchyme - * *Definition* = Mesenchyme that is part of a camera-type eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a camera-type eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - change mesenchyme relationships to precursor_of ## Synonyms - * mesenchyme of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003414.md b/md/UBERON/14/UBERON_0003414.md index 2cd23f064a..5cc968dde6 100644 --- a/md/UBERON/14/UBERON_0003414.md +++ b/md/UBERON/14/UBERON_0003414.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003414 * *Label* = mesenchyme of mandible - * *Definition* = Mesenchyme that is part of a mandible [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a mandible [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone of lower jaw mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of ventral mandibular arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower jaw mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of ventral mandibular arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw bone mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw bone organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mandible mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mandibulla mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of bone of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of bone of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of bone organ of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of bone organ of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower jaw bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower jaw bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of mandibulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of ventral mandibular arch bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of ventral mandibular arch bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch bone mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch bone organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of lower jaw mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of ventral mandibular arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower jaw mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of ventral mandibular arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw bone mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw bone organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mandible mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mandibulla mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of bone of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of bone of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of bone organ of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of bone organ of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower jaw bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower jaw bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of mandibulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of ventral mandibular arch bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of ventral mandibular arch bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch bone mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch bone organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mandible](../../UBERON/84/UBERON_0001684.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003514.md b/md/UBERON/14/UBERON_0003514.md index 6f4c99909b..0aed717966 100644 --- a/md/UBERON/14/UBERON_0003514.md +++ b/md/UBERON/14/UBERON_0003514.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003514 * *Label* = limb blood vessel - * *Definition* = A blood vessel that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003614.md b/md/UBERON/14/UBERON_0003614.md index d5376f358c..fa2ed29596 100644 --- a/md/UBERON/14/UBERON_0003614.md +++ b/md/UBERON/14/UBERON_0003614.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003614 * *Label* = blood vessel elastic tissue - * *Definition* = A tissue that is found in the tunica media of the vessels wall and allows vessels to stretch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006083] + * *Definition* = A tissue that is found in the tunica media of the vessels wall and allows vessels to stretch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006083 ] ## Synonyms - * blood vessel elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * vascular elastic laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * vascular elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006083] + * blood vessel elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * vascular elastic laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * vascular elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006083 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003714.md b/md/UBERON/14/UBERON_0003714.md index 1179b455c6..22e5e3d5b5 100644 --- a/md/UBERON/14/UBERON_0003714.md +++ b/md/UBERON/14/UBERON_0003714.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003714 * *Label* = neural tissue - * *Definition* = Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9642] + * *Definition* = Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9642 ] * *Comment* = FMA definition includes vasculature ## Synonyms - * nerve tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9642] - * nervous tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9642] - * portion of neural tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9642] + * nerve tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9642 ] + * nervous tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9642 ] + * portion of neural tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9642 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A08.561 * OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ * SCTID:91728009 - * UMLS:C0027757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nervous_Tissue] + * UMLS:C0027757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nervous_Tissue ] * ncithesaurus:Nervous_Tissue ## Subsets @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [glial cell](../../CL/25/CL_0000125.md) and [has_part](../../BFO/51/BFO_0000051.md) some [neuron](../../CL/40/CL_0000540.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0003914.md b/md/UBERON/14/UBERON_0003914.md index be89ad6ecb..74d267c15a 100644 --- a/md/UBERON/14/UBERON_0003914.md +++ b/md/UBERON/14/UBERON_0003914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003914 * *Label* = epithelial tube - * *Definition* = Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060562[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12526790] + * *Definition* = Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060562, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12526790 ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_quality](../../SIO/08/SIO_000008.md) some [cylindrical](../../PATO/73/PATO_0001873.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004014.md b/md/UBERON/14/UBERON_0004014.md index fd77d96d41..e8180c8286 100644 --- a/md/UBERON/14/UBERON_0004014.md +++ b/md/UBERON/14/UBERON_0004014.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004014 * *Label* = labium minora - * *Definition* = The labia minora or nymphae are two longitudinal cutaneous folds on the human vulva. They are situated between the labia majora, and extend from the clitoris obliquely downward, laterally, and backward on either side of the vulval vestibule, ending between bottom of the vulval vestibule and the labia majora. In the virgin the posterior ends of the labia minora are usually joined across the middle line by a fold of skin, named the frenulum labiorum pudendi or fourchette. Labia minora may vary widely in size from woman to woman. On the front, each labium minus (nympha) divides into two portions: the upper division passes above the clitoris to meet the labium minus of the opposite sidewhich may not be equal in sizeforming a fold which overhangs the glans clitoridis; this fold is named the preputium clitoridis. The lower division passes beneath the glans clitoridis and becomes united to its under surface, forming, with the labium minus of the opposite sidewhich also may not be equal in sizethe frenulum clitoridis. On the opposed surfaces of the labia minora are numerous sebaceous follicles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labia_minora] + * *Definition* = The labia minora or nymphae are two longitudinal cutaneous folds on the human vulva. They are situated between the labia majora, and extend from the clitoris obliquely downward, laterally, and backward on either side of the vulval vestibule, ending between bottom of the vulval vestibule and the labia majora. In the virgin the posterior ends of the labia minora are usually joined across the middle line by a fold of skin, named the frenulum labiorum pudendi or fourchette. Labia minora may vary widely in size from woman to woman. On the front, each labium minus (nympha) divides into two portions: the upper division passes above the clitoris to meet the labium minus of the opposite sidewhich may not be equal in sizeforming a fold which overhangs the glans clitoridis; this fold is named the preputium clitoridis. The lower division passes beneath the glans clitoridis and becomes united to its under surface, forming, with the labium minus of the opposite sidewhich also may not be equal in sizethe frenulum clitoridis. On the opposed surfaces of the labia minora are numerous sebaceous follicles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labia_minora ] ## Synonyms * labia minorum * labium minora - * labium minorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002845] - * labium minus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20374] - * labium minus pudendi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labia_minora[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labium minorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002845 ] + * labium minus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20374 ] + * labium minus pudendi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labia_minora, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20374 * MA:0002845 * SCTID:362240001 - * UMLS:C0227766 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Labium_Minus] + * UMLS:C0227766 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Labium_Minus ] * Wikipedia:Labia_minora * galen:LabiaMinora * http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004114.md b/md/UBERON/14/UBERON_0004114.md index 759a2aac4b..756db4ce67 100644 --- a/md/UBERON/14/UBERON_0004114.md +++ b/md/UBERON/14/UBERON_0004114.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004114 * *Label* = tympanic cavity - * *Definition* = small cavity surrounding the bones of the middle ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_cavity] + * *Definition* = small cavity surrounding the bones of the middle ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_cavity ] ## Synonyms - * anatomical cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavitas tympani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle-ear cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavitas tympanica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002098] - * tympanum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002098] + * anatomical cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavitas tympani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle-ear cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavitas tympanica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002098 ] + * tympanum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002098 ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [middle ear](../../UBERON/56/UBERON_0001756.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004214.md b/md/UBERON/14/UBERON_0004214.md index baaac5fe14..bb0c560719 100644 --- a/md/UBERON/14/UBERON_0004214.md +++ b/md/UBERON/14/UBERON_0004214.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004214 * *Label* = upper leg nerve - * *Definition* = A nerve that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free lower limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of Proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free lower limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of Proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004314.md b/md/UBERON/14/UBERON_0004314.md index 318c55764f..ad08412d4b 100644 --- a/md/UBERON/14/UBERON_0004314.md +++ b/md/UBERON/14/UBERON_0004314.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004314 * *Label* = distal phalanx of manual digit 5 - * *Definition* = A distal phalanx that is part of a hand digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a hand digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th digit of hand distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 5th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 5th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23949] - * distal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23949] - * fifth distal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23949] - * fifth finger distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5th digit of hand distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 5th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 5th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23949 ] + * distal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23949 ] + * fifth distal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23949 ] + * fifth finger distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004414.md b/md/UBERON/14/UBERON_0004414.md index 9e56267aa5..86e6c22d91 100644 --- a/md/UBERON/14/UBERON_0004414.md +++ b/md/UBERON/14/UBERON_0004414.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004414 * *Label* = proximal epiphysis of phalanx of manus - * *Definition* = A proximal epiphysis that is part of a phalanx of manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a phalanx of manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:226482] - * base of phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:226482] - * basis phalangis manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:226482[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal epiphysis of phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:226482 ] + * base of phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:226482 ] + * basis phalangis manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:226482, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * proximal epiphysis of phalanx of finger ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [phalanx of manus](../../UBERON/36/UBERON_0001436.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004514.md b/md/UBERON/14/UBERON_0004514.md index d1cd6657e6..1d24f9ffb5 100644 --- a/md/UBERON/14/UBERON_0004514.md +++ b/md/UBERON/14/UBERON_0004514.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004514 * *Label* = skeletal muscle tissue of transversus thoracis - * *Definition* = A portion of skeletal muscle tissue that is part of a transversus thoracis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a transversus thoracis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [transversus thoracis](../../UBERON/04/UBERON_0002404.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004614.md b/md/UBERON/14/UBERON_0004614.md index 3de3c8fda9..fc0a51ffae 100644 --- a/md/UBERON/14/UBERON_0004614.md +++ b/md/UBERON/14/UBERON_0004614.md @@ -7,9 +7,9 @@ ## Synonyms - * C5 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12523] - * cervical vertebra 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001425] - * fifth cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12523] + * C5 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12523 ] + * cervical vertebra 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001425 ] + * fifth cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12523 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:12523 * MA:0001425 * SCTID:181825000 - * UMLS:C0459943 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C5_Vertebra] + * UMLS:C0459943 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C5_Vertebra ] * ncithesaurus:C5_Vertebra ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004714.md b/md/UBERON/14/UBERON_0004714.md index fca284dd4d..5ef5e8d09d 100644 --- a/md/UBERON/14/UBERON_0004714.md +++ b/md/UBERON/14/UBERON_0004714.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004714 * *Label* = septum pellucidum - * *Definition* = A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1315] + * *Definition* = A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1315 ] ## Synonyms - * septal pellucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1315] - * septum pellucidum of telencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * supracommissural septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61844] - * lateral septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012004] - * pellucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003448] - * septum gliosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:256[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septum lucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003448[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012004] + * septal pellucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1315 ] + * septum pellucidum of telencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * supracommissural septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61844 ] + * lateral septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012004 ] + * pellucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003448 ] + * septum gliosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:256, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septum lucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003448, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012004 ] ## Cross-references @@ -24,10 +24,10 @@ * MA:0002979 * MESH:A08.186.211.276.814 * NIF_GrossAnatomy:birnlex_1315 - * NeuroNames:256 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1315] + * NeuroNames:256 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1315 ] * SCTID:362313003 - * UMLS:C0036700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1315] - * UMLS:C0036700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Septum_Pellucidum] + * UMLS:C0036700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1315 ] + * UMLS:C0036700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Septum_Pellucidum ] * Wikipedia:Septum_pellucidum * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004814.md b/md/UBERON/14/UBERON_0004814.md index c011c15444..40b0dee0d3 100644 --- a/md/UBERON/14/UBERON_0004814.md +++ b/md/UBERON/14/UBERON_0004814.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004814 * *Label* = upper respiratory tract epithelium - * *Definition* = An epithelium that is part of a upper respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a upper respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of upper respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of upper respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper respiratory tract epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of upper respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of upper respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper respiratory tract epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper respiratory tract](../../UBERON/57/UBERON_0001557.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0004914.md b/md/UBERON/14/UBERON_0004914.md index 394a23e3cb..74b6e8c8cb 100644 --- a/md/UBERON/14/UBERON_0004914.md +++ b/md/UBERON/14/UBERON_0004914.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004914 * *Label* = duodenal papilla - * *Definition* = One of the two small elevations on the mucosa of the duodenum, the major at the entrance of the conjoined pancreatic and common bile ducts and the minor at the entrance of the accessory pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/duodenal+papilla] + * *Definition* = One of the two small elevations on the mucosa of the duodenum, the major at the entrance of the conjoined pancreatic and common bile ducts and the minor at the entrance of the accessory pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/duodenal+papilla ] ## Synonyms * papilla duodenalis * papilla of duodenum - * papilla duodeni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_duodenal_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * papilla duodeni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_duodenal_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005014.md b/md/UBERON/14/UBERON_0005014.md index 67537fa0c2..73a9d6825d 100644 --- a/md/UBERON/14/UBERON_0005014.md +++ b/md/UBERON/14/UBERON_0005014.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005014 * *Label* = mucosa of female urethra - * *Definition* = A mucosa that is part of a female urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a female urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * female urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * female urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female urethra](../../UBERON/34/UBERON_0001334.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005114.md b/md/UBERON/14/UBERON_0005114.md index 8719798c06..3d3273d8e2 100644 --- a/md/UBERON/14/UBERON_0005114.md +++ b/md/UBERON/14/UBERON_0005114.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005114 * *Label* = metanephric ascending thin limb - * *Definition* = The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072218] + * *Definition* = The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072218 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [loop of Henle ascending limb thin segment](../../UBERON/93/UBERON_0004193.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005214.md b/md/UBERON/14/UBERON_0005214.md index b0125e2e67..495f8d5ab5 100644 --- a/md/UBERON/14/UBERON_0005214.md +++ b/md/UBERON/14/UBERON_0005214.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005214 * *Label* = inner renal medulla interstitium - * *Definition* = A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of interstitial tissue that is part of a inner medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inner medullary interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28364] - * kidney inner medulla interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002620] + * inner medullary interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28364 ] + * kidney inner medulla interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002620 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inner medulla of kidney](../../UBERON/94/UBERON_0001294.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005314.md b/md/UBERON/14/UBERON_0005314.md index d5362e4d0c..36f6be3322 100644 --- a/md/UBERON/14/UBERON_0005314.md +++ b/md/UBERON/14/UBERON_0005314.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005314 * *Label* = alveolar primary septum - * *Definition* = A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061143] + * *Definition* = A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061143 ] * *Comment* = TODO - check UBERON:0004893 interalveolar septum ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005414.md b/md/UBERON/14/UBERON_0005414.md index 1acaa5e98c..f2e4a3b9cf 100644 --- a/md/UBERON/14/UBERON_0005414.md +++ b/md/UBERON/14/UBERON_0005414.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005414 * *Label* = zone of polarizing activity - * *Definition* = an area of mesenchyme that contains signals which instruct the developing limb or fin bud to form along the anterior/posterior axis[WP,cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zone_of_polarizing_activity] + * *Definition* = an area of mesenchyme that contains signals which instruct the developing limb or fin bud to form along the anterior/posterior axis[WP,cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zone_of_polarizing_activity ] * *Comment* = WP definition generalized to cover limb/fin ## Synonyms - * ZPA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001451] - * zona activitatis polarisantis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zone_of_polarizing_activity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ZPA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001451 ] + * zona activitatis polarisantis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zone_of_polarizing_activity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Morphologically indistinct signaling region found in the posterior portion of the limb bud. Associated with anterior-posterior patterning of the digits.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005614.md b/md/UBERON/14/UBERON_0005614.md index dd4832b94d..76de680e39 100644 --- a/md/UBERON/14/UBERON_0005614.md +++ b/md/UBERON/14/UBERON_0005614.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005614 * *Label* = lens anterior epithelium - * *Definition* = One of the 4 layers of the crystalline lens. It is found between the anterior surface of the capsule and the cortex. It is simple cuboidal epithelium responsible for creating new cells for the lens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Subcapsular_Epithelium_of_the_Lens] + * *Definition* = One of the 4 layers of the crystalline lens. It is found between the anterior surface of the capsule and the cortex. It is simple cuboidal epithelium responsible for creating new cells for the lens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Subcapsular_Epithelium_of_the_Lens ] * *Comment* = Cells of the subcapsular epithelium (or anterior lens cells) are mitotically active. In adult individuals they only cover the anterior "hemisphere" of the lens. As they divide, cells gradually move towards the equator of the lens where they tranform into lens fibres. The apical part of the gradually elongating cell extends between the subcapsular epithelium and adjacent lens fibres towards the anterior pole of the lens. The basal part extends towards the posterior pole. The nucleus remains close to the equatorial plane of the lens - http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm ## Synonyms - * lens subcapsular epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm] - * subcapsular lens epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70612] + * lens subcapsular epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.lab.anhb.uwa.edu.au/mb140/corepages/eye/eye.htm ] + * subcapsular lens epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70612 ] * lens epithelium - * anterior epithelium of lens vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17304] - * anterior surface of lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58889] + * anterior epithelium of lens vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17304 ] + * anterior surface of lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58889 ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001302 * RETIRED_EHDAA2:0000976 * SCTID:362521008 - * UMLS:C1182652 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subcapsular_Epithelium_of_the_Lens] + * UMLS:C1182652 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subcapsular_Epithelium_of_the_Lens ] * VHOG:0001425 * ncithesaurus:Subcapsular_Epithelium_of_the_Lens @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0005714.md b/md/UBERON/14/UBERON_0005714.md index f607ab4e53..b65aff69a6 100644 --- a/md/UBERON/14/UBERON_0005714.md +++ b/md/UBERON/14/UBERON_0005714.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA:4739 * *[consider](../../er/oboInOwl#consider.md)* = RETIRED_EHDAA2:0000985 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001804 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005714 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_0005814.md b/md/UBERON/14/UBERON_0005814.md index 1cb0fbe190..7bc7b40ec2 100644 --- a/md/UBERON/14/UBERON_0005814.md +++ b/md/UBERON/14/UBERON_0005814.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005814 * *Label* = arch of atlas - * *Definition* = A vertebral arch that is part of the first cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A vertebral arch that is part of the first cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * atlas arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23975] + * atlas arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23975 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arch of centrum of vertebra](../../UBERON/58/UBERON_0010358.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 1](../../UBERON/92/UBERON_0001092.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006014.md b/md/UBERON/14/UBERON_0006014.md index bd98c3322f..d4bccb6fc2 100644 --- a/md/UBERON/14/UBERON_0006014.md +++ b/md/UBERON/14/UBERON_0006014.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006014 * *Label* = interdigital region between pedal digits - * *Definition* = An interdigital region that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot interdigit region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000651] - * foot interdigital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000992] + * foot interdigit region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000651 ] + * foot interdigital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000992 ] * interdigit region of pes * pedal interdigit region @@ -27,16 +27,18 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region](../../UBERON/12/UBERON_0006012.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006114.md b/md/UBERON/14/UBERON_0006114.md index f553ef6f39..1898ef22e5 100644 --- a/md/UBERON/14/UBERON_0006114.md +++ b/md/UBERON/14/UBERON_0006114.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006114 * *Label* = lateral occipital cortex - * *Definition* = Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_735] + * *Definition* = Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_735 ] ## Synonyms - * gyrus occipitalis medius (mai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61902] - * gyrus occipitalis secundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61902] - * lateral occipital cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_735] - * lateral occipital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_735] - * gyrus occipitalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:155[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * middle occipital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:155] + * gyrus occipitalis medius (mai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61902 ] + * gyrus occipitalis secundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61902 ] + * lateral occipital cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_735 ] + * lateral occipital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_735 ] + * gyrus occipitalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:155, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * middle occipital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:155 ] ## Cross-references * BAMS:LOG * FMA:61902 * NIF_GrossAnatomy:birnlex_735 - * NeuroNames:155 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_735] + * NeuroNames:155 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_735 ] * SCTID:369218006 - * UMLS:C0228228 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_735] + * UMLS:C0228228 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_735 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006214.md b/md/UBERON/14/UBERON_0006214.md index a1007e81a4..ea7d7aa6fd 100644 --- a/md/UBERON/14/UBERON_0006214.md +++ b/md/UBERON/14/UBERON_0006214.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006214 * *Label* = carpus pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a carpal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a carpal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [carpal bone](../../UBERON/35/UBERON_0001435.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006314.md b/md/UBERON/14/UBERON_0006314.md index a05f6479cd..1517ec61a3 100644 --- a/md/UBERON/14/UBERON_0006314.md +++ b/md/UBERON/14/UBERON_0006314.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006314 * *Label* = bodily fluid - * *Definition* = Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.207[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_fluid] + * *Definition* = Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.207, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_fluid ] * *Comment* = consider merging with parent class ## Synonyms - * body fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:266] + * body fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:266 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006514.md b/md/UBERON/14/UBERON_0006514.md index c1f9b0f4db..9a618e3522 100644 --- a/md/UBERON/14/UBERON_0006514.md +++ b/md/UBERON/14/UBERON_0006514.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006514 * *Label* = pallidum - * *Definition* = Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medterms.com/script/main/art.asp?articlekey=11614] + * *Definition* = Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medterms.com/script/main/art.asp?articlekey=11614 ] ## Synonyms - * neuraxis pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83684] - * pallidum of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83684] + * neuraxis pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83684 ] + * pallidum of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83684 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006614.md b/md/UBERON/14/UBERON_0006614.md index 28ce4f9622..04eb7031cf 100644 --- a/md/UBERON/14/UBERON_0006614.md +++ b/md/UBERON/14/UBERON_0006614.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006614 * *Label* = aponeurosis - * *Definition* = A sheet of extracellular matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000092[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aponeurosis] + * *Definition* = A sheet of extracellular matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000092, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aponeurosis ] * *Comment* = AO notes: in ZFA, aponeuroses are subtypes of tendons, but this is inconsistent with tendons being muscle-bone connections ## Synonyms - * aponeuroses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aponeurosis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * aponeurotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aponeurosis] + * aponeuroses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aponeurosis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * aponeurotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aponeurosis ] ## Cross-references @@ -17,7 +17,7 @@ * EHDAA2:0003092 * FMA:9722 * SCTID:331712004 - * UMLS:C0225205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aponeurosis] + * UMLS:C0225205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aponeurosis ] * Wikipedia:Aponeurosis * ZFA:0005652 * http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon[Wikipedia:Aponeurosis]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006714.md b/md/UBERON/14/UBERON_0006714.md index 0a8725d3e5..a54c97b86b 100644 --- a/md/UBERON/14/UBERON_0006714.md +++ b/md/UBERON/14/UBERON_0006714.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006714 * *Label* = tibiofibula - * *Definition* = Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Maglia_et_al_2007] + * *Definition* = Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Maglia_et_al_2007 ] ## Synonyms - * tibia-fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003213] + * tibia-fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003213 ] * tibiofibula - * os cruris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000902] + * os cruris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000902 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0006914.md b/md/UBERON/14/UBERON_0006914.md index 948c6bf989..8c5abcc3c4 100644 --- a/md/UBERON/14/UBERON_0006914.md +++ b/md/UBERON/14/UBERON_0006914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006914 * *Label* = squamous epithelium - * *Definition* = an epithelium characterised by its most superficial layer consisting of squamous epithelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamous_epithelium] + * *Definition* = an epithelium characterised by its most superficial layer consisting of squamous epithelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamous_epithelium ] * *Comment* = consider FBbt:00007028 (squamous epithelium) A type of epithelium that is made up of flattened cells which are arranged with their long axes in the plane of the epithelium ## Synonyms @@ -13,7 +13,7 @@ * BTO:0002072 * SCTID:40118003 - * UMLS:C0221909 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Squamous_Epithelium] + * UMLS:C0221909 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Squamous_Epithelium ] * Wikipedia:Squamous_epithelium * ncithesaurus:Squamous_Epithelium @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_part](../../BFO/51/BFO_0000051.md) some [squamous epithelial cell](../../CL/76/CL_0000076.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007214.md b/md/UBERON/14/UBERON_0007214.md index bc82dd9798..14d70bdbf9 100644 --- a/md/UBERON/14/UBERON_0007214.md +++ b/md/UBERON/14/UBERON_0007214.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007214 * *Label* = mesenchyme derived from trunk neural crest - * *Definition* = Mesenchyme that develops_from a trunk neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a trunk neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trunk mesenchyme from neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002093] + * trunk mesenchyme from neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002093 ] * trunk neural crest derived mesenchyme ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [trunk neural crest](../../UBERON/83/UBERON_0003083.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007314.md b/md/UBERON/14/UBERON_0007314.md index 990c4602dd..c9d89b5ad0 100644 --- a/md/UBERON/14/UBERON_0007314.md +++ b/md/UBERON/14/UBERON_0007314.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007414.md b/md/UBERON/14/UBERON_0007414.md index 9365e868a9..47e4b026a2 100644 --- a/md/UBERON/14/UBERON_0007414.md +++ b/md/UBERON/14/UBERON_0007414.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007414 * *Label* = nucleus of midbrain tegmentum - * *Definition* = A nucleus of brain that is part of a midbrain tegmentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a midbrain tegmentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class groups together any nuclei in the tegmentum region, possibly including disparate structures across species ## Synonyms - * tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005577] + * tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005577 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural nucleus](../../UBERON/25/UBERON_0000125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0012277 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007614.md b/md/UBERON/14/UBERON_0007614.md index 24cd1eb0bf..78aa956358 100644 --- a/md/UBERON/14/UBERON_0007614.md +++ b/md/UBERON/14/UBERON_0007614.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007614 * *Label* = extensor digiti minimi muscle - * *Definition* = The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the manus, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digiti_minimi_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml] + * *Definition* = The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the manus, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digiti_minimi_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml ] * *Comment* = The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor. ## Synonyms - * extensor digiti minimi %28hand%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digiti_minimi_muscle] - * extensor digiti minimi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digiti_minimi_muscle] - * extensor digiti quinti proprius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digiti_minimi_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml] - * musculus extensor digiti minimi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digiti_minimi_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extensor digiti minimi %28hand%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digiti_minimi_muscle ] + * extensor digiti minimi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digiti_minimi_muscle ] + * extensor digiti quinti proprius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digiti_minimi_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml ] + * musculus extensor digiti minimi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digiti_minimi_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007714.md b/md/UBERON/14/UBERON_0007714.md index bbe708feba..4d22dd64b2 100644 --- a/md/UBERON/14/UBERON_0007714.md +++ b/md/UBERON/14/UBERON_0007714.md @@ -6,7 +6,7 @@ ## Synonyms - * segment part of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1688] + * segment part of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1688 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0007914.md b/md/UBERON/14/UBERON_0007914.md index dd8c9ded0a..11a5c28b79 100644 --- a/md/UBERON/14/UBERON_0007914.md +++ b/md/UBERON/14/UBERON_0007914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007914 * *Label* = head or neck bone - * *Definition* = A bone that is part of a craniocervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a craniocervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0008114.md b/md/UBERON/14/UBERON_0008114.md index e5141a6539..9319faf982 100644 --- a/md/UBERON/14/UBERON_0008114.md +++ b/md/UBERON/14/UBERON_0008114.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008114 * *Label* = joint of girdle - * *Definition* = A skeletal joint that is part of a appendage girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that is part of a appendage girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * girdle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * girdle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [appendage girdle region](../../UBERON/23/UBERON_0007823.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0008814.md b/md/UBERON/14/UBERON_0008814.md index 8e58b384be..fc33a5430f 100644 --- a/md/UBERON/14/UBERON_0008814.md +++ b/md/UBERON/14/UBERON_0008814.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008814 * *Label* = pharyngeal system - * *Definition* = A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060037[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dph] + * *Definition* = A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060037, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dph ] ## Synonyms * pharyngeal apparatus - * pharyngeal arch region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000187] + * pharyngeal arch region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000187 ] * pharyngeal arches and clefts ## Cross-references * EHDAA2:0000187 - * UMLS:C1519038 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Apparatus] + * UMLS:C1519038 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Apparatus ] * ncithesaurus:Pharyngeal_Apparatus ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0009014.md b/md/UBERON/14/UBERON_0009014.md index cec961586b..d09d87e618 100644 --- a/md/UBERON/14/UBERON_0009014.md +++ b/md/UBERON/14/UBERON_0009014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009014 * *Label* = lower back skin - * *Definition* = A zone of skin that is part of a lower back. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a lower back. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower back](../../UBERON/62/UBERON_0005462.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0009114.md b/md/UBERON/14/UBERON_0009114.md index 6adfde10fa..63b60ac16e 100644 --- a/md/UBERON/14/UBERON_0009114.md +++ b/md/UBERON/14/UBERON_0009114.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009114 * *Label* = cervical thymus - * *Definition* = A mature thymus that is entirely part of the cervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A mature thymus that is entirely part of the cervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = A cervical thymus is a pathological structure in a human - it can form during the migration of the thymus to its location in the mediastinum. Some mice have a cervical thymus. There are examples of cervical thymi in marsupials and prosimians[ISBN-10:0781714125] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) and [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9263 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0009614.md b/md/UBERON/14/UBERON_0009614.md index df73cdd111..83cc8deb24 100644 --- a/md/UBERON/14/UBERON_0009614.md +++ b/md/UBERON/14/UBERON_0009614.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009614 * *Label* = hindbrain neural plate - * *Definition* = A neural plate that develops_from a presumptive hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural plate that develops_from a presumptive hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [presumptive hindbrain](../../UBERON/77/UBERON_0007277.md) and [neural plate](../../UBERON/75/UBERON_0003075.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0009714.md b/md/UBERON/14/UBERON_0009714.md index 3172e0df65..6af5f8500d 100644 --- a/md/UBERON/14/UBERON_0009714.md +++ b/md/UBERON/14/UBERON_0009714.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009714 * *Label* = intermaxillary process - * *Definition* = the primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment] + * *Definition* = the primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment ] * *Comment* = Editors note: requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences. See also: median cleft lip ## Synonyms - * globular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermaxillary_segment[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * globular processes of his [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermaxillary_segment[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * intermaxillary segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermaxillary_segment] + * globular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermaxillary_segment, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * globular processes of his [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermaxillary_segment, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * intermaxillary segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermaxillary_segment ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0009914.md b/md/UBERON/14/UBERON_0009914.md index dcdced3953..e11715d730 100644 --- a/md/UBERON/14/UBERON_0009914.md +++ b/md/UBERON/14/UBERON_0009914.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009914 * *Label* = renal lobule - * *Definition* = the portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011382[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortical_lobule] + * *Definition* = the portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011382, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortical_lobule ] * *Comment* = Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis ## Synonyms - * kidney lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011382] + * kidney lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011382 ] * lobulus renalis - * cortical lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011382[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortical_lobule] - * cortical lobule of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * lobuli corticales renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortical_lobule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus corticalis renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * renal cortical lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * renculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * reniculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] - * renunculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?lobus+renalis] + * cortical lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011382, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortical_lobule ] + * cortical lobule of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * lobuli corticales renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortical_lobule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus corticalis renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * renal cortical lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * renculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * reniculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] + * renunculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?lobus+renalis ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobule](../../UBERON/11/UBERON_0009911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010014.md b/md/UBERON/14/UBERON_0010014.md index fda7b23217..3f907c8148 100644 --- a/md/UBERON/14/UBERON_0010014.md +++ b/md/UBERON/14/UBERON_0010014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010014 * *Label* = epigonal organ - * *Definition* = An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ] + * *Definition* = An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010214.md b/md/UBERON/14/UBERON_0010214.md index 207c33e7ff..c8c2c16998 100644 --- a/md/UBERON/14/UBERON_0010214.md +++ b/md/UBERON/14/UBERON_0010214.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010314.md b/md/UBERON/14/UBERON_0010314.md index 606fb08042..f0a00a6496 100644 --- a/md/UBERON/14/UBERON_0010314.md +++ b/md/UBERON/14/UBERON_0010314.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010314 * *Label* = structure with developmental contribution from neural crest - * *Definition* = An anatomical structure that has some part that develops from the neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that has some part that develops from the neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [has developmental contribution from](../../RO/54/RO_0002254.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010414.md b/md/UBERON/14/UBERON_0010414.md index dd1d9c595a..2d6e7628ac 100644 --- a/md/UBERON/14/UBERON_0010414.md +++ b/md/UBERON/14/UBERON_0010414.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010414 * *Label* = omental fat pad - * *Definition* = encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * omental fat depot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010044] + * omental fat depot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010044 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [abdominal fat pad](../../UBERON/27/UBERON_0003427.md) and [part_of](../../BFO/50/BFO_0000050.md) some [omentum](../../UBERON/88/UBERON_0003688.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010414 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010514.md b/md/UBERON/14/UBERON_0010514.md index 075aadeb76..311fe1abd4 100644 --- a/md/UBERON/14/UBERON_0010514.md +++ b/md/UBERON/14/UBERON_0010514.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010514 * *Label* = strand of duvet hair - * *Definition* = A strand of hair from the fine underhair of the coat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000408] + * *Definition* = A strand of hair from the fine underhair of the coat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000408 ] * *Comment* = AO notes - not a pelage hair in MA, but is in MP ## Synonyms - * duvet hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001895] + * duvet hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001895 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0010714.md b/md/UBERON/14/UBERON_0010714.md index 83057e0d28..fd77a39630 100644 --- a/md/UBERON/14/UBERON_0010714.md +++ b/md/UBERON/14/UBERON_0010714.md @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [iliac endochondral element](../../UBERON/54/UBERON_0015054.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010714 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011014.md b/md/UBERON/14/UBERON_0011014.md index 341b50a830..981cca590d 100644 --- a/md/UBERON/14/UBERON_0011014.md +++ b/md/UBERON/14/UBERON_0011014.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011014 * *Label* = spinalis capitis muscle - * *Definition* = Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002622] + * *Definition* = Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002622 ] ## Synonyms - * spinal muscle of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002622] - * spinalis capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22775] - * musculus spinalis capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002622] + * spinal muscle of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002622 ] + * spinalis capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22775 ] + * musculus spinalis capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002622 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011214.md b/md/UBERON/14/UBERON_0011214.md index ddc866fee5..b24198fea2 100644 --- a/md/UBERON/14/UBERON_0011214.md +++ b/md/UBERON/14/UBERON_0011214.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011214 * *Label* = nucleus of midbrain tectum - * *Definition* = A neural nucleus that is part of a midbrain tectum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural nucleus that is part of a midbrain tectum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nucleus of tectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258766] + * nucleus of tectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258766 ] * tectal nucleus ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural nucleus](../../UBERON/25/UBERON_0000125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tectum](../../UBERON/14/UBERON_0002314.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011214 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011314.md b/md/UBERON/14/UBERON_0011314.md index 506fe259ed..9aeb103173 100644 --- a/md/UBERON/14/UBERON_0011314.md +++ b/md/UBERON/14/UBERON_0011314.md @@ -6,7 +6,7 @@ ## Synonyms - * masseter, anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * masseter, anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior masseter is a separable part of the masseter muscle that is attached to anterior root of zygomatic arch.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011614.md b/md/UBERON/14/UBERON_0011614.md index d3f85e47e5..99fc791d71 100644 --- a/md/UBERON/14/UBERON_0011614.md +++ b/md/UBERON/14/UBERON_0011614.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011614 * *Label* = basihyal element - * *Definition* = Skeletal element that is median and is the anterior-most element of the ventral hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001891] + * *Definition* = Skeletal element that is median and is the anterior-most element of the ventral hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001891 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011814.md b/md/UBERON/14/UBERON_0011814.md index 3b16cecefa..ad9e5d826c 100644 --- a/md/UBERON/14/UBERON_0011814.md +++ b/md/UBERON/14/UBERON_0011814.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011814 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0011914.md b/md/UBERON/14/UBERON_0011914.md index 4c62407476..3a71f24e28 100644 --- a/md/UBERON/14/UBERON_0011914.md +++ b/md/UBERON/14/UBERON_0011914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011914 * *Label* = pubioischiotibialis muscle - * *Definition* = A muscle of lower tetrapods that covers much of the lower leg and retracts it. Homologous to mammalian gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A muscle of lower tetrapods that covers much of the lower leg and retracts it. Homologous to mammalian gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0012114.md b/md/UBERON/14/UBERON_0012114.md index 313ed10f60..892136fd8d 100644 --- a/md/UBERON/14/UBERON_0012114.md +++ b/md/UBERON/14/UBERON_0012114.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012114 * *Label* = cud - * *Definition* = a bolus of semi-degraded food regurgitated from the reticulorumen of a ruminant, produced during the physical digestive process of rumination [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cud] + * *Definition* = a bolus of semi-degraded food regurgitated from the reticulorumen of a ruminant, produced during the physical digestive process of rumination [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cud ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bolus of food](../../UBERON/13/UBERON_0012113.md) and [output_of](../../core#output/of/core#output_of.md) some [rumination](../../GO/47/GO_0036147.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0012314.md b/md/UBERON/14/UBERON_0012314.md index be679a0acb..48ee36eadd 100644 --- a/md/UBERON/14/UBERON_0012314.md +++ b/md/UBERON/14/UBERON_0012314.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012314 * *Label* = embryonic facial prominence - * *Definition* = One of five swellings formed during the development of the face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.indiana.edu/~anat550/hnanim/face/face.html] + * *Definition* = One of five swellings formed during the development of the face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.indiana.edu/~anat550/hnanim/face/face.html ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012314 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0013114.md b/md/UBERON/14/UBERON_0013114.md index 1e27019ed7..e15d5eefc4 100644 --- a/md/UBERON/14/UBERON_0013114.md +++ b/md/UBERON/14/UBERON_0013114.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013114 * *Label* = compressor glandulae muscle - * *Definition* = A prominent compressor muscle found in poisonous snakes that originates in the lower jaw, sweeps around the venom gland, and inserted on the gland's surface. The muscles acts to squeeze the gland and release venom. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A prominent compressor muscle found in poisonous snakes that originates in the lower jaw, sweeps around the venom gland, and inserted on the gland's surface. The muscles acts to squeeze the gland and release venom. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = only found in crotaline snakes, and has a spotty distribution within that group ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0013514.md b/md/UBERON/14/UBERON_0013514.md index ec7346d3c6..2bd3afa64e 100644 --- a/md/UBERON/14/UBERON_0013514.md +++ b/md/UBERON/14/UBERON_0013514.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013514 * *Label* = space surrounding organism - * *Definition* = the space that surrounds an organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = the space that surrounds an organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [surrounds](../../RO/21/RO_0002221.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013514 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0013614.md b/md/UBERON/14/UBERON_0013614.md index 7fc0511f69..84d3cbafd9 100644 --- a/md/UBERON/14/UBERON_0013614.md +++ b/md/UBERON/14/UBERON_0013614.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013614 * *Label* = fasciculus aberans - * *Definition* = The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MorphoBank:177] + * *Definition* = The fasciulus aberrans is a distinct bundle of fibers at the dorsal aspect of the anterior commisure. These fibers travel in the internal capsule between the putamen and caudate nuclei, and cross the midline to connect the dorsal neocortex of the two hemispheres. When the fasciculus aberrans is absent, the fibers connecting the neocortex of the two hemispheres takes a diffderent route through the external capsule[Johnson et al., (1982a, 1982b, 1994)] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MorphoBank:177 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0014614.md b/md/UBERON/14/UBERON_0014614.md index c154ee1ee6..52dc19587b 100644 --- a/md/UBERON/14/UBERON_0014614.md +++ b/md/UBERON/14/UBERON_0014614.md @@ -6,13 +6,13 @@ ## Synonyms - * cervical spinal cord white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1531[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * cervical spinal cord white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1531, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_1531 * SCTID:174829001 - * UMLS:C0228616 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1531] + * UMLS:C0228616 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1531 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [white matter of spinal cord](../../UBERON/18/UBERON_0002318.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014614 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0014914.md b/md/UBERON/14/UBERON_0014914.md index ef5739a2ba..f22002d8b3 100644 --- a/md/UBERON/14/UBERON_0014914.md +++ b/md/UBERON/14/UBERON_0014914.md @@ -7,7 +7,7 @@ ## Synonyms - * blood testis barrier [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:G06.535.166.330.100] + * blood testis barrier [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:G06.535.166.330.100 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014914 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0015014.md b/md/UBERON/14/UBERON_0015014.md index 0c10f0ad2e..b204f9c629 100644 --- a/md/UBERON/14/UBERON_0015014.md +++ b/md/UBERON/14/UBERON_0015014.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015014 * *Label* = calcaneum endochondral element - * *Definition* = A calcaneum bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A calcaneum bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * calcaneum element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * calcaneum skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * calcaneum element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * calcaneum skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [calcaneum cartilage element](../../UBERON/42/UBERON_0010842.md)or[calcaneum pre-cartilage condensation](../../UBERON/01/UBERON_0010801.md)or[calcaneus](../../UBERON/50/UBERON_0001450.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_0015114.md b/md/UBERON/14/UBERON_0015114.md index fb3331de89..5910ae152d 100644 --- a/md/UBERON/14/UBERON_0015114.md +++ b/md/UBERON/14/UBERON_0015114.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015114 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_1000014.md b/md/UBERON/14/UBERON_1000014.md index 37877c0e3f..56c6bb845c 100644 --- a/md/UBERON/14/UBERON_1000014.md +++ b/md/UBERON/14/UBERON_1000014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000014 * *Label* = right part of face - * *Definition* = Subdivision of the head consisting of the right half of the face, vertically divided. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the right half of the face, vertically divided. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000014 + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2000214.md b/md/UBERON/14/UBERON_2000214.md index 076efb8d6c..8e48cbb457 100644 --- a/md/UBERON/14/UBERON_2000214.md +++ b/md/UBERON/14/UBERON_2000214.md @@ -6,7 +6,7 @@ ## Synonyms - * hypobranchial vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000214[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * hypobranchial vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000214, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2000414.md b/md/UBERON/14/UBERON_2000414.md index c66fce9bb6..0d973a4098 100644 --- a/md/UBERON/14/UBERON_2000414.md +++ b/md/UBERON/14/UBERON_2000414.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2000614.md b/md/UBERON/14/UBERON_2000614.md index 44bf84623e..c445bf8fef 100644 --- a/md/UBERON/14/UBERON_2000614.md +++ b/md/UBERON/14/UBERON_2000614.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2000714.md b/md/UBERON/14/UBERON_2000714.md index 57940ce971..29dd7d4527 100644 --- a/md/UBERON/14/UBERON_2000714.md +++ b/md/UBERON/14/UBERON_2000714.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2000814.md b/md/UBERON/14/UBERON_2000814.md index 02c7578be7..470ce09fef 100644 --- a/md/UBERON/14/UBERON_2000814.md +++ b/md/UBERON/14/UBERON_2000814.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000814 * *Label* = opercular lateral line neuromast - * *Definition* = Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast opercular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000814] - * neuromasts opercular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000814[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * neuromast opercular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000814 ] + * neuromasts opercular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000814, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001014.md b/md/UBERON/14/UBERON_2001014.md index 6ad9ae1278..c9b0775253 100644 --- a/md/UBERON/14/UBERON_2001014.md +++ b/md/UBERON/14/UBERON_2001014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001014 * *Label* = myotome somite 13 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001314.md b/md/UBERON/14/UBERON_2001314.md index 0b8851384a..f942c324ce 100644 --- a/md/UBERON/14/UBERON_2001314.md +++ b/md/UBERON/14/UBERON_2001314.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001314 * *Label* = posterior lateral line ganglion - * *Definition* = The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001614.md b/md/UBERON/14/UBERON_2001614.md index 60ba9308bc..f9f17a5ea3 100644 --- a/md/UBERON/14/UBERON_2001614.md +++ b/md/UBERON/14/UBERON_2001614.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001614 * *Label* = anal fin middle radial bone - * *Definition* = anal fin middle radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin middle radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Synonym anal fin medial radial from Weitzman, 1962. ## Synonyms - * anal fin medial radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] - * medial anal-fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] + * anal fin medial radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] + * medial anal-fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] ## Cross-references @@ -26,14 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin middle radial element](../../UBERON/14/UBERON_2101614.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001714.md b/md/UBERON/14/UBERON_2001714.md index 0977e8b54d..c60c3cb8c3 100644 --- a/md/UBERON/14/UBERON_2001714.md +++ b/md/UBERON/14/UBERON_2001714.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001714 * *Label* = caudal principal ray 2 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001814.md b/md/UBERON/14/UBERON_2001814.md index 3c441779b8..1e82eea11a 100644 --- a/md/UBERON/14/UBERON_2001814.md +++ b/md/UBERON/14/UBERON_2001814.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001814 * *Label* = mandibular sensory canal - * *Definition* = Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with the preoperculo-mandibular sensory canal. ## Synonyms - * mandibular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001814] + * mandibular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001814 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2001914.md b/md/UBERON/14/UBERON_2001914.md index 3d1f36b5dd..35a47bfd21 100644 --- a/md/UBERON/14/UBERON_2001914.md +++ b/md/UBERON/14/UBERON_2001914.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001914 * *Label* = obsolete basibranchial element - * *Definition* = Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0004740 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_2002014.md b/md/UBERON/14/UBERON_2002014.md index 3c2ff08d16..a3ce2353cc 100644 --- a/md/UBERON/14/UBERON_2002014.md +++ b/md/UBERON/14/UBERON_2002014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002014 * *Label* = ascending limb of ceratobranchial 5 cartilage - * *Definition* = Process that is the dorsally directed portion of ceratobranchial 5 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the dorsally directed portion of ceratobranchial 5 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = An ascending limb of the ceratobranchial is found in Cypriniformes. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2002114.md b/md/UBERON/14/UBERON_2002114.md index 0249b1f5f2..4bf0121254 100644 --- a/md/UBERON/14/UBERON_2002114.md +++ b/md/UBERON/14/UBERON_2002114.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002114 * *Label* = cotylephore - * *Definition* = Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: James Wetzel, John P. Wourms and John Friel 1997. Comparative morphology of cotylephores in Platystacus and Solenostomus: modifications of the integument for egg attachment in skin-brooding fishes. @@ -12,7 +12,7 @@ Pages 13 - 25. ## Synonyms - * cotylephores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002114[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * cotylephores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002114, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -36,7 +36,9 @@ Pages 13 - 25. * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2002214.md b/md/UBERON/14/UBERON_2002214.md index 87bb23e516..561079415b 100644 --- a/md/UBERON/14/UBERON_2002214.md +++ b/md/UBERON/14/UBERON_2002214.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2005014.md b/md/UBERON/14/UBERON_2005014.md index 36a939988c..b391c5e52f 100644 --- a/md/UBERON/14/UBERON_2005014.md +++ b/md/UBERON/14/UBERON_2005014.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005014 * *Label* = recurrent branch afferent branchial artery - * *Definition* = The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * RCB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005014] - * recurrent branch afferent branchial arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005014[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * RCB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005014 ] + * recurrent branch afferent branchial arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005014, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2005114.md b/md/UBERON/14/UBERON_2005114.md index 9b12c57c26..a4d2595aa4 100644 --- a/md/UBERON/14/UBERON_2005114.md +++ b/md/UBERON/14/UBERON_2005114.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2005214.md b/md/UBERON/14/UBERON_2005214.md index 306b440863..a6cf17febe 100644 --- a/md/UBERON/14/UBERON_2005214.md +++ b/md/UBERON/14/UBERON_2005214.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon lateral caudal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005214] + * mesencephalon lateral caudal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005214 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_2007014.md b/md/UBERON/14/UBERON_2007014.md index 17b146fbed..143342352f 100644 --- a/md/UBERON/14/UBERON_2007014.md +++ b/md/UBERON/14/UBERON_2007014.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2101614.md b/md/UBERON/14/UBERON_2101614.md index 4a282b8093..2041b27be8 100644 --- a/md/UBERON/14/UBERON_2101614.md +++ b/md/UBERON/14/UBERON_2101614.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101614 * *Label* = anal fin middle radial element - * *Definition* = Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anal fin radial element that is the rod-like internal median skeletal support element of the anal fin located between the anal fin proximal radial element and anal fin distal radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonym anal fin medial radial from Weitzman, 1962. ## Synonyms - * anal fin medial radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] - * medial anal-fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] + * anal fin medial radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] + * medial anal-fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_2201614.md b/md/UBERON/14/UBERON_2201614.md index 11af7b3a6f..06163686c3 100644 --- a/md/UBERON/14/UBERON_2201614.md +++ b/md/UBERON/14/UBERON_2201614.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201614 * *Label* = anal fin middle radial cartilage - * *Definition* = anal fin middle radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin middle radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Synonym anal fin medial radial from Weitzman, 1962. ## Synonyms - * anal fin medial radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] - * medial anal-fin radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001614] + * anal fin medial radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] + * medial anal-fin radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001614 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin middle radial element](../../UBERON/14/UBERON_2101614.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_3000414.md b/md/UBERON/14/UBERON_3000414.md index 3046452499..27db980e26 100644 --- a/md/UBERON/14/UBERON_3000414.md +++ b/md/UBERON/14/UBERON_3000414.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000414 * *Label* = pars palatina of premaxilla - * *Definition* = Lingual ledge on the inner surface of the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lingual ledge on the inner surface of the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_3000714.md b/md/UBERON/14/UBERON_3000714.md index 5b75de0e6b..45af0e5ddc 100644 --- a/md/UBERON/14/UBERON_3000714.md +++ b/md/UBERON/14/UBERON_3000714.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000714 * *Label* = perichordal - * *Definition* = Vertebral centrum that originates from ossification of the entire perichordal tube; the resulting element is cylindrical in cross section and may have an open (notochord retained) or solid center. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Kluge_and_Farris_1969] + * *Definition* = Vertebral centrum that originates from ossification of the entire perichordal tube; the resulting element is cylindrical in cross section and may have an open (notochord retained) or solid center. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Kluge_and_Farris_1969 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_3000814.md b/md/UBERON/14/UBERON_3000814.md index 20a0d63369..621cabc0d1 100644 --- a/md/UBERON/14/UBERON_3000814.md +++ b/md/UBERON/14/UBERON_3000814.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000814 * *Label* = glenoid head of coracoid - * *Definition* = Lateral end of the coracoid, which forms the medial portion of the glenoid fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral end of the coracoid, which forms the medial portion of the glenoid fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * intumescentia glenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000814] + * intumescentia glenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000814 ] ## Cross-references @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_3010014.md b/md/UBERON/14/UBERON_3010014.md index c65c250437..83399323af 100644 --- a/md/UBERON/14/UBERON_3010014.md +++ b/md/UBERON/14/UBERON_3010014.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_3010314.md b/md/UBERON/14/UBERON_3010314.md index c07c418338..2c71187289 100644 --- a/md/UBERON/14/UBERON_3010314.md +++ b/md/UBERON/14/UBERON_3010314.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010314 * *Label* = obsolete abdominal myoblast - * *Definition* = The myoblast that forms the muscles of the anterior abdominal walls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010314] + * *Definition* = The myoblast that forms the muscles of the anterior abdominal walls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010314 ] ## Synonyms - * abdominal musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010314] + * abdominal musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010314 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_3010614.md b/md/UBERON/14/UBERON_3010614.md index 4ef3b04764..817ad57081 100644 --- a/md/UBERON/14/UBERON_3010614.md +++ b/md/UBERON/14/UBERON_3010614.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010614 * *Label* = cartilago lateralis of aryngo-tracheal chamber - * *Definition* = A series of semicircular cartilages on the side of the laryngo-tracheal chamber. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A series of semicircular cartilages on the side of the laryngo-tracheal chamber. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_4000014.md b/md/UBERON/14/UBERON_4000014.md index 207ee73db9..6a3466fe3c 100644 --- a/md/UBERON/14/UBERON_4000014.md +++ b/md/UBERON/14/UBERON_4000014.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000014 * *Label* = obsolete basihyal cartilage - * *Definition* = Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Term resides in TAO. ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011615 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/14/UBERON_4100014.md b/md/UBERON/14/UBERON_4100014.md index 7e5822190a..433aad9093 100644 --- a/md/UBERON/14/UBERON_4100014.md +++ b/md/UBERON/14/UBERON_4100014.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_4200014.md b/md/UBERON/14/UBERON_4200014.md index 1d5955a41d..f09d055f44 100644 --- a/md/UBERON/14/UBERON_4200014.md +++ b/md/UBERON/14/UBERON_4200014.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_4200114.md b/md/UBERON/14/UBERON_4200114.md index 96d8a4e622..f8597a4b47 100644 --- a/md/UBERON/14/UBERON_4200114.md +++ b/md/UBERON/14/UBERON_4200114.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/14/UBERON_4300014.md b/md/UBERON/14/UBERON_4300014.md index 4eb92b8a07..e33215ac38 100644 --- a/md/UBERON/14/UBERON_4300014.md +++ b/md/UBERON/14/UBERON_4300014.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0000015.md b/md/UBERON/15/UBERON_0000015.md index bc56813cce..a73b9e2a53 100644 --- a/md/UBERON/15/UBERON_0000015.md +++ b/md/UBERON/15/UBERON_0000015.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000015 * *Label* = anatomical boundary - * *Definition* = Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256502] + * *Definition* = Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256502 ] ## Synonyms - * anatomical boundary entity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50705] + * anatomical boundary entity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50705 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0000115.md b/md/UBERON/15/UBERON_0000115.md index ba71a44315..f297dac1e4 100644 --- a/md/UBERON/15/UBERON_0000115.md +++ b/md/UBERON/15/UBERON_0000115.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000115 * *Label* = lung epithelium - * *Definition* = the epithelial layer of the lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006382] + * *Definition* = the epithelial layer of the lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006382 ] ## Synonyms - * epithelial tissue of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pulmonary epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001653] + * epithelial tissue of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pulmonary epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001653 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0000315.md b/md/UBERON/15/UBERON_0000315.md index d634c88ae8..84b55b0b58 100644 --- a/md/UBERON/15/UBERON_0000315.md +++ b/md/UBERON/15/UBERON_0000315.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000315 * *Label* = subarachnoid space - * *Definition* = The space between the arachnoid and pia mater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:add[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subarachnoid_space[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&atid=1109502&aid=3535256&group_id=76834] + * *Definition* = The space between the arachnoid and pia mater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:add, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subarachnoid_space, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&atid=1109502&aid=3535256&group_id=76834 ] ## Synonyms - * cavitas subarachnoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000230[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavum subarachnoideale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subarachnoid_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spatium leptomeningeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000230[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spatium subarachnoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000230[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spatium subarachnoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subarachnoid_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subarachnoid cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000230] + * cavitas subarachnoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000230, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavum subarachnoideale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subarachnoid_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spatium leptomeningeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000230, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spatium subarachnoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000230, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spatium subarachnoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subarachnoid_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subarachnoid cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000230 ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pia mater](../../UBERON/61/UBERON_0002361.md) and [anatomical space](../../UBERON/64/UBERON_0000464.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0000415.md b/md/UBERON/15/UBERON_0000415.md index d961b56e7a..2632768e05 100644 --- a/md/UBERON/15/UBERON_0000415.md +++ b/md/UBERON/15/UBERON_0000415.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000415 * *Label* = artery wall - * *Definition* = An anatomical wall that is part of an artery [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of an artery [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Arterial wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14155] - * wall of artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14155] + * Arterial wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14155 ] + * wall of artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14155 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0000915.md b/md/UBERON/15/UBERON_0000915.md index 55cef4b9d3..e51411ff9b 100644 --- a/md/UBERON/15/UBERON_0000915.md +++ b/md/UBERON/15/UBERON_0000915.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000915 * *Label* = thoracic segment of trunk - * *Definition* = Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thorax] + * *Definition* = Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thorax ] * *Comment* = Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest ## Synonyms - * thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000022] + * thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000022 ] * upper body ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001015.md b/md/UBERON/15/UBERON_0001015.md index dea3cf5dac..a4c65175c6 100644 --- a/md/UBERON/15/UBERON_0001015.md +++ b/md/UBERON/15/UBERON_0001015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001015 * *Label* = musculature - * *Definition* = A subdivision of the muscular system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscular_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A subdivision of the muscular system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscular_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here. ## Synonyms @@ -11,9 +11,9 @@ * muscle group * muscles set * musculature - * musculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32558[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32558] - * set of skeletal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000165] + * musculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32558, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32558 ] + * set of skeletal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000165 ] * muscle system * muscles * musculature system @@ -28,7 +28,7 @@ * MA:0000165 * OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA * TAO:0000548 - * UMLS:C0026845 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle] + * UMLS:C0026845 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle ] * VSAO:0005038 * WBbt:0005737 * Wikipedia:Muscular_system @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001115.md b/md/UBERON/15/UBERON_0001115.md index 8b0215468f..1011d84f55 100644 --- a/md/UBERON/15/UBERON_0001115.md +++ b/md/UBERON/15/UBERON_0001115.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001115 * *Label* = left lobe of liver - * *Definition* = The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_lobe_of_liver] + * *Definition* = The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_lobe_of_liver ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * left liver lobe * liver left lobe - * lobus hepaticus sinister [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus hepatis sinister [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_lobe_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus hepaticus sinister [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus hepatis sinister [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_lobe_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0000361 * SCTID:362183003 * TAO:0005172 - * UMLS:C0227486 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lobe_of_the_Liver] + * UMLS:C0227486 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lobe_of_the_Liver ] * VHOG:0001423 * Wikipedia:Left_lobe_of_liver * ZFA:0005172 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the liver which develops on the fish's left side.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001215.md b/md/UBERON/15/UBERON_0001215.md index ae5d70adba..4846c91d2f 100644 --- a/md/UBERON/15/UBERON_0001215.md +++ b/md/UBERON/15/UBERON_0001215.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001215 * *Label* = inferior mesenteric vein - * *Definition* = In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_vein] + * *Definition* = In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * lower mesenteric vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002782] - * vena mesenterica inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lower mesenteric vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002782 ] + * vena mesenterica inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002178 * OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA * SCTID:281055007 - * UMLS:C0226754 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Mesenteric_Vein] + * UMLS:C0226754 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Mesenteric_Vein ] * VHOG:0001118 * Wikipedia:Inferior_mesenteric_vein * http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001315.md b/md/UBERON/15/UBERON_0001315.md index 5915ed2cec..f326e7d7c9 100644 --- a/md/UBERON/15/UBERON_0001315.md +++ b/md/UBERON/15/UBERON_0001315.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001315 * *Label* = superior gluteal artery - * *Definition* = The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_gluteal_artery] + * *Definition* = The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_gluteal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * arteria glutealis superior - * arteria glutea superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_gluteal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria glutea superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_gluteal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18868 * MA:0002054 * SCTID:181354004 - * UMLS:C0226371 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gluteal_Artery] + * UMLS:C0226371 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gluteal_Artery ] * Wikipedia:Superior_gluteal_artery * http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001415.md b/md/UBERON/15/UBERON_0001415.md index c2e0ad5ae2..ce82c43212 100644 --- a/md/UBERON/15/UBERON_0001415.md +++ b/md/UBERON/15/UBERON_0001415.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001415 * *Label* = skin of pelvis - * *Definition* = A zone of skin that is part of a pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * pelvic skin * pelvis skin - * pelvis zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pelvis zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001515.md b/md/UBERON/15/UBERON_0001515.md index 586b560234..dd8707e6c0 100644 --- a/md/UBERON/15/UBERON_0001515.md +++ b/md/UBERON/15/UBERON_0001515.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001515 * *Label* = thoracic aorta - * *Definition* = The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_aorta] + * *Definition* = The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_aorta ] ## Synonyms * thoracic part of aorta - * aorta thoracalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars thoracica aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aorta thoracalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars thoracica aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.231.114.056.372 * OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA * SCTID:302510009 - * UMLS:C1522460 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Aorta] + * UMLS:C1522460 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Aorta ] * Wikipedia:Thoracic_aorta * galen:ThoracicAorta * http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [segment of aorta](../../UBERON/00/UBERON_0005800.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001615.md b/md/UBERON/15/UBERON_0001615.md index 6fadada537..8566f15a8b 100644 --- a/md/UBERON/15/UBERON_0001615.md +++ b/md/UBERON/15/UBERON_0001615.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001615 * *Label* = transverse facial artery - * *Definition* = The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_facial_artery] + * *Definition* = The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_facial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria transversa faciei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_facial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria transversa faciei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_facial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49657 * MA:0002068 * SCTID:146551008 - * UMLS:C0226132 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transverse_Facial_Artery] + * UMLS:C0226132 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transverse_Facial_Artery ] * Wikipedia:Transverse_facial_artery * http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001715.md b/md/UBERON/15/UBERON_0001715.md index 36cd241884..9ad5c8e549 100644 --- a/md/UBERON/15/UBERON_0001715.md +++ b/md/UBERON/15/UBERON_0001715.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001715 * *Label* = oculomotor nuclear complex - * *Definition* = The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_of_oculomotor_nerve] + * *Definition* = The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_of_oculomotor_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nucleus nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54510[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54510] - * nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * nucleus of third cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54510] + * nucleus nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54510, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54510 ] + * nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * nucleus of third cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54510 ] * oculomotor III nuclear complex - * oculomotor III nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001073] - * oculomotor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54510] - * third cranial nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54510] - * 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1240[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * oculomotor III nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001073 ] + * oculomotor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54510 ] + * third cranial nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54510 ] + * 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1240, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * motor nucleus III * nIII - * nucleus oculomotorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:492[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oculomotor motornucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004389] + * nucleus oculomotorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:492, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oculomotor motornucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004389 ] ## Cross-references @@ -35,11 +35,11 @@ * FMA:54510 * MA:0001073 * NIF_GrossAnatomy:birnlex_1240 - * NeuroNames:492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1240] + * NeuroNames:492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1240 ] * SCTID:362457000 * TAO:0000553 - * UMLS:C0228686 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1240] - * UMLS:C0228686 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oculomotor_Nucleus] + * UMLS:C0228686 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1240 ] + * UMLS:C0228686 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oculomotor_Nucleus ] * VHOG:0001389 * Wikipedia:Nucleus_of_oculomotor_nerve * XAO:0004389 @@ -71,8 +71,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The nucleus of the oculomotor nerve (cranial nerve III)[XAO:0004389]. * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_84019 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001815.md b/md/UBERON/15/UBERON_0001815.md index 6d01a5d112..8cd3455778 100644 --- a/md/UBERON/15/UBERON_0001815.md +++ b/md/UBERON/15/UBERON_0001815.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001815 * *Label* = lumbosacral nerve plexus - * *Definition* = The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbosacral_plexus] + * *Definition* = The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbosacral_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lumbosacral plexus - * plexus lumbosacralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5907[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus lumbosacralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbosacral_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus lumbosacralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5907, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus lumbosacralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbosacral_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A08.800.800.720.450 * OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA * SCTID:181049003 - * UMLS:C0024093 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbosacral_Plexus] + * UMLS:C0024093 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbosacral_Plexus ] * VHOG:0000926 * Wikipedia:Lumbosacral_plexus * http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0001915.md b/md/UBERON/15/UBERON_0001915.md index 4e97e87365..08c6a6db04 100644 --- a/md/UBERON/15/UBERON_0001915.md +++ b/md/UBERON/15/UBERON_0001915.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001915 * *Label* = endothelium of capillary - * *Definition* = An endothelium that is part of a capillary [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a capillary [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * blood capillary endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood capillary endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * capillary endothelium - * capillary vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * capillary vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * CALOHA:TS-0112 * FMA:62114 * MA:0000711 - * UMLS:C0006904 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Capillary_Endothelium] + * UMLS:C0006904 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Capillary_Endothelium ] * ncithesaurus:Capillary_Endothelium ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [capillary](../../UBERON/82/UBERON_0001982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002015.md b/md/UBERON/15/UBERON_0002015.md index 1513a6b0e1..d653d85f60 100644 --- a/md/UBERON/15/UBERON_0002015.md +++ b/md/UBERON/15/UBERON_0002015.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002015 * *Label* = kidney capsule - * *Definition* = The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Kidney_capsule] + * *Definition* = The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Kidney_capsule ] ## Synonyms * capsule of kidney - * fibrous capsule of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66610] - * renal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072127] + * fibrous capsule of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66610 ] + * renal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072127 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:66610 * MA:0000370 * SCTID:243657006 - * UMLS:C0227637 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Capsule] + * UMLS:C0227637 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Capsule ] * Wikipedia:Kidney_capsule * galen:CapsuleOfKidney * http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002115.md b/md/UBERON/15/UBERON_0002115.md index 81a03ecbb6..c54da60860 100644 --- a/md/UBERON/15/UBERON_0002115.md +++ b/md/UBERON/15/UBERON_0002115.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002115 * *Label* = jejunum - * *Definition* = The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jejunum] + * *Definition* = The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jejunum ] * *Comment* = TODO consider ZFA:0001323 mid intestine, see also small intestine ## Synonyms - * intestinum jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000657] - * middle intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000657] + * intestinum jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000657 ] + * middle intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000657 ] ## Cross-references @@ -27,7 +27,7 @@ * MIAA:0000045 * OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA * SCTID:181248002 - * UMLS:C0022378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Jejunum] + * UMLS:C0022378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Jejunum ] * VHOG:0000053 * Wikipedia:Jejunum * galen:Jejunum @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first two fifth of the small intestine beyond the duodenum. It extends from the end of the duodenum to the ileum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = jejunal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002215.md b/md/UBERON/15/UBERON_0002215.md index 3791f23032..1d5d0e6e9f 100644 --- a/md/UBERON/15/UBERON_0002215.md +++ b/md/UBERON/15/UBERON_0002215.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002215 * *Label* = synchondrosis - * *Definition* = Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synchondrosis] + * *Definition* = Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synchondrosis ] * *Comment* = Editor's note: WP considers epiphyseal plates as subtypes of this // consider adding link to hyaline cartilage ## Synonyms - * cartilago epiphysialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7497[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primary cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7497] - * epiphysial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7497] + * cartilago epiphysialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7497, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primary cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7497 ] + * epiphysial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7497 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002315.md b/md/UBERON/15/UBERON_0002315.md index 4a2e81dac2..1b5feb3bbb 100644 --- a/md/UBERON/15/UBERON_0002315.md +++ b/md/UBERON/15/UBERON_0002315.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002315 * *Label* = gray matter of spinal cord - * *Definition* = the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008503] + * *Definition* = the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008503 ] ## Synonyms - * gray matter of neuraxis of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gray substance of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256580] + * gray matter of neuraxis of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gray substance of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256580 ] * grey matter of spinal cord * grey substance of spinal cord - * spinal cord gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord gray matter of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * spinal cord gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord gray matter of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * spinal cord grey matter - * spinal cord grey substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * spinal cord grey substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,7 +24,7 @@ * NIF_GrossAnatomy:nlx_anat_100204 * NeuroNames:2619 * SCTID:279441003 - * UMLS:C0475853 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gray_Matter_of_the_Spinal_Cord] + * UMLS:C0475853 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gray_Matter_of_the_Spinal_Cord ] * ncithesaurus:Gray_Matter_of_the_Spinal_Cord ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002415.md b/md/UBERON/15/UBERON_0002415.md index 9aed102421..40eed77263 100644 --- a/md/UBERON/15/UBERON_0002415.md +++ b/md/UBERON/15/UBERON_0002415.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002415 * *Label* = tail - * *Definition* = section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OMD:tail[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tail[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OMD:tail, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tail, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editor notes: Note we also have a subclass post-anal tail, for the chordate specific structure. currently defined very generally, inclusive of caudal fin ## Synonyms - * caudal subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * caudal subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002515.md b/md/UBERON/15/UBERON_0002515.md index bac4fae51a..a58871a7a3 100644 --- a/md/UBERON/15/UBERON_0002515.md +++ b/md/UBERON/15/UBERON_0002515.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002515 * *Label* = periosteum - * *Definition* = Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periosteum] + * *Definition* = Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periosteum ] ## Synonyms @@ -16,7 +16,7 @@ * MA:0002838 * MESH:A10.165.265.746 * SCTID:33840008 - * UMLS:C0031110 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Periosteum] + * UMLS:C0031110 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Periosteum ] * Wikipedia:Periosteum * galen:PeriOsteum * http://upload.wikimedia.org/wikipedia/commons/c/cf/Bone_growth.png @@ -42,8 +42,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = periosteal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002615.md b/md/UBERON/15/UBERON_0002615.md index 3e1c75222d..20cb006781 100644 --- a/md/UBERON/15/UBERON_0002615.md +++ b/md/UBERON/15/UBERON_0002615.md @@ -6,16 +6,16 @@ ## Synonyms - * anterior tegmental decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72452] - * decussatio tegmentalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72452[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior tegmental decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72452 ] + * decussatio tegmentalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72452, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * decussation of forel * ventral tegmental decussation of forel - * vtgx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * decussatio inferior (Forel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:524[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio tegmenti ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:524[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio ventralis tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:524[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior decussation (Forel's decussation) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:524] - * ventral tegmental decussation (Forel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:524] + * vtgx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * decussatio inferior (Forel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:524, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio tegmenti ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:524, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio ventralis tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:524, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior decussation (Forel's decussation) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:524 ] + * ventral tegmental decussation (Forel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:524 ] ## Cross-references @@ -23,9 +23,9 @@ * BAMS:vtgx * FMA:72452 * NIF_GrossAnatomy:birnlex_1163 - * NeuroNames:524 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1163] + * NeuroNames:524 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1163 ] * SCTID:369249001 - * UMLS:C0152371 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1163] + * UMLS:C0152371 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1163 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002715.md b/md/UBERON/15/UBERON_0002715.md index 1a6aa8e4de..63cd8bf590 100644 --- a/md/UBERON/15/UBERON_0002715.md +++ b/md/UBERON/15/UBERON_0002715.md @@ -6,16 +6,16 @@ ## Synonyms - * spinal trigeminal tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:791] - * tractus spinalis nervi trigemini (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:791[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spinal trigeminal tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:791 ] + * tractus spinalis nervi trigemini (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:791, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:sp5m * FMA:72625 * NIF_GrossAnatomy:birnlex_1477 - * NeuroNames:791 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1477] - * UMLS:C0262330 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1477] + * NeuroNames:791 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1477 ] + * UMLS:C0262330 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1477 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002815.md b/md/UBERON/15/UBERON_0002815.md index 7d13074025..ddcc004942 100644 --- a/md/UBERON/15/UBERON_0002815.md +++ b/md/UBERON/15/UBERON_0002815.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002815 * *Label* = horizontal fissure of cerebellum - * *Definition* = The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Horizontal_fissure_of_cerebellum] + * *Definition* = The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Horizontal_fissure_of_cerebellum ] ## Synonyms - * fissura intercruralis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75135[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * great horizontal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75135] + * fissura intercruralis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75135, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * great horizontal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75135 ] * horizontal sulcus - * intercrural fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75135] + * intercrural fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75135 ] * horizontal fissure - * fissura horizontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Horizontal_fissure_of_cerebellum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fissura horizontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Horizontal_fissure_of_cerebellum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0002915.md b/md/UBERON/15/UBERON_0002915.md index 059029c2df..7bbf3bf707 100644 --- a/md/UBERON/15/UBERON_0002915.md +++ b/md/UBERON/15/UBERON_0002915.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002915 * *Label* = postcentral sulcus - * *Definition* = The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postcentral_sulcus] + * *Definition* = The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postcentral_sulcus ] ## Synonyms - * postcentral fissure of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83774] - * postcentral fissure-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83774] - * structure of postcentral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4033] - * sulcus postcentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4033] - * pocs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4033[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus postcentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postcentral_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * postcentral fissure of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83774 ] + * postcentral fissure-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83774 ] + * structure of postcentral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4033 ] + * sulcus postcentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4033 ] + * pocs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4033, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus postcentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postcentral_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,11 +20,11 @@ * BM:Tel-Cx-PoCS * FMA:83774 * NIF_GrossAnatomy:birnlex_4033 - * NeuroNames:99 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4033] + * NeuroNames:99 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4033 ] * SCTID:279339003 - * UMLS:C0228212 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4033] - * UMLS:C0228212 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Postcentral_Sulcus] - * UMLS:C1281070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4033] + * UMLS:C0228212 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4033 ] + * UMLS:C0228212 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Postcentral_Sulcus ] + * UMLS:C1281070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4033 ] * Wikipedia:Postcentral_sulcus * http://upload.wikimedia.org/wikipedia/commons/6/6c/Postcentral_sulcus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Postcentral_sulcus.png/200px-Postcentral_sulcus.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003015.md b/md/UBERON/15/UBERON_0003015.md index 070b2d7316..5ab6896a22 100644 --- a/md/UBERON/15/UBERON_0003015.md +++ b/md/UBERON/15/UBERON_0003015.md @@ -6,12 +6,12 @@ ## Synonyms - * anterior crescentic lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516] - * anterior quadrangular lobule of cerebellum [H IV et V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516] - * anterior quadrangular lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516] - * anterior semilunar lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516] - * lobulus quadrangularis anterior cerebelli [h iv et v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semilunar lobule-1 (anterior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72516] + * anterior crescentic lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516 ] + * anterior quadrangular lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516 ] + * anterior quadrangular lobule of cerebellum [H IV et V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516 ] + * anterior semilunar lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516 ] + * lobulus quadrangularis anterior cerebelli [h iv et v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semilunar lobule-1 (anterior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72516 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003115.md b/md/UBERON/15/UBERON_0003115.md index 30db0ba689..923a1d50c8 100644 --- a/md/UBERON/15/UBERON_0003115.md +++ b/md/UBERON/15/UBERON_0003115.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003115 * *Label* = pharyngeal arch 4 - * *Definition* = contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006340] + * *Definition* = contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006340 ] * *Comment* = in XAO, called branchial arch 2 and df VP4 ## Synonyms - * 4th branchial arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 4th branchial arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * 4th pharyngeal arch * 4th visceral arch * fourth pharyngeal arch - * gill arch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001607[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * second gill arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001607[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * gill arch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001607, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * second gill arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001607, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * visceral arch 4 - * 4th arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000086] - * branchial arch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010366[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001607[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fourth visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000299] - * second branchial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001607[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 4th arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000086 ] + * branchial arch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010366, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001607, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fourth visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000299 ] + * second branchial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001607, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 4 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003215.md b/md/UBERON/15/UBERON_0003215.md index 9ffb70a154..54330d35be 100644 --- a/md/UBERON/15/UBERON_0003215.md +++ b/md/UBERON/15/UBERON_0003215.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003215 * *Label* = alveolus - * *Definition* = organ part that has the form of a hollow cavity[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolus] + * *Definition* = organ part that has the form of a hollow cavity[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolus ] ## Synonyms @@ -14,7 +14,7 @@ * EV:0100043 * FMA:82493 * OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA - * UMLS:C0034051 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolus] + * UMLS:C0034051 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolus ] * Wikipedia:Alveolus * ncithesaurus:Alveolus @@ -35,8 +35,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = alveolar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003315.md b/md/UBERON/15/UBERON_0003315.md index 6e6f69800e..649a5a0a43 100644 --- a/md/UBERON/15/UBERON_0003315.md +++ b/md/UBERON/15/UBERON_0003315.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003315 * *Label* = mesenchyme of ovary - * *Definition* = Mesenchyme that is part of a ovary [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a ovary [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * female reproductive system gonad mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female reproductive system gonada mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of female reproductive system mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of female reproductive system mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of female reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of female reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of gonad of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of gonada of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ovary mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * female reproductive system gonad mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female reproductive system gonada mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of female reproductive system mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of female reproductive system mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of female reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of female reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of gonad of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of gonada of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ovary mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003415.md b/md/UBERON/15/UBERON_0003415.md index c2b997adf3..b349eb4c9a 100644 --- a/md/UBERON/15/UBERON_0003415.md +++ b/md/UBERON/15/UBERON_0003415.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003415 * *Label* = mesenchyme of nasal septum - * *Definition* = Mesenchyme that is part of a nasal septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a nasal septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nasal septum mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nasal septum mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasal septum](../../UBERON/06/UBERON_0001706.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003515.md b/md/UBERON/15/UBERON_0003515.md index 653437a975..fee0fa80a0 100644 --- a/md/UBERON/15/UBERON_0003515.md +++ b/md/UBERON/15/UBERON_0003515.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003515 * *Label* = forelimb blood vessel - * *Definition* = A blood vessel that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003615.md b/md/UBERON/15/UBERON_0003615.md index 7031419bea..9bc3660465 100644 --- a/md/UBERON/15/UBERON_0003615.md +++ b/md/UBERON/15/UBERON_0003615.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003615 * *Label* = lung elastic tissue - * *Definition* = Elastic tissue that is part of a lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Elastic tissue that is part of a lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * elastic connective tissue of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pulmonary elastic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * elastic connective tissue of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pulmonary elastic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003715.md b/md/UBERON/15/UBERON_0003715.md index 41bf626e04..b788d96578 100644 --- a/md/UBERON/15/UBERON_0003715.md +++ b/md/UBERON/15/UBERON_0003715.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003715 * *Label* = splanchnic nerve - * *Definition* = the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008318] + * *Definition* = the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008318 ] ## Synonyms - * splanchnic nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:spn] + * splanchnic nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:spn ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0003915.md b/md/UBERON/15/UBERON_0003915.md index d9c47cc3d5..dae8ba4207 100644 --- a/md/UBERON/15/UBERON_0003915.md +++ b/md/UBERON/15/UBERON_0003915.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003915 * *Label* = endothelial tube - * *Definition* = Any endothelium that has the quality of being cylindrical [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any endothelium that has the quality of being cylindrical [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [has_quality](../../SIO/08/SIO_000008.md) some [cylindrical](../../PATO/73/PATO_0001873.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004015.md b/md/UBERON/15/UBERON_0004015.md index b62cf1aaf9..3401ea3377 100644 --- a/md/UBERON/15/UBERON_0004015.md +++ b/md/UBERON/15/UBERON_0004015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004015 * *Label* = embryonic-extraembryonic boundary - * *Definition* = the normal development /maintenance of the connection between the embryo proper and extraembryonic tissues [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003890] + * *Definition* = the normal development /maintenance of the connection between the embryo proper and extraembryonic tissues [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003890 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [embryonic structure](../../UBERON/50/UBERON_0002050.md) and [adjacent to](../../RO/20/RO_0002220.md) some [extraembryonic structure](../../UBERON/78/UBERON_0000478.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004115.md b/md/UBERON/15/UBERON_0004115.md index 5b74b4c301..07216dcf7f 100644 --- a/md/UBERON/15/UBERON_0004115.md +++ b/md/UBERON/15/UBERON_0004115.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004115 * *Label* = blood vessel of tympanic cavity - * *Definition* = A blood vessel that is part of a tympanic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a tympanic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anatomical cavity of middle ear blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of anatomical cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of middle ear anatomical cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of middle ear cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of middle ear blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear anatomical cavity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical cavity of middle ear blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of anatomical cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of middle ear anatomical cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of middle ear cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of middle ear blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear anatomical cavity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * middle ear blood vessel - * middle ear cavity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * middle ear cavity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tympanic cavity blood vessel ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [located_in](../../RO/25/RO_0001025.md) some [tympanic cavity](../../UBERON/14/UBERON_0004114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004215.md b/md/UBERON/15/UBERON_0004215.md index 0e8fa620e3..399bcbdaf8 100644 --- a/md/UBERON/15/UBERON_0004215.md +++ b/md/UBERON/15/UBERON_0004215.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004215 * *Label* = back nerve - * *Definition* = A nerve that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004315.md b/md/UBERON/15/UBERON_0004315.md index ce8b87fa6e..30697ed4d0 100644 --- a/md/UBERON/15/UBERON_0004315.md +++ b/md/UBERON/15/UBERON_0004315.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004315 * *Label* = distal phalanx of pedal digit 1 - * *Definition* = A distal phalanx that is part of a foot digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a foot digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32627] - * distal phalanx of first digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32627] - * distal phalanx of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32627] - * distal phalanx of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first distal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32627] - * foot digit 1 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hallux distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * distal phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32627 ] + * distal phalanx of first digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32627 ] + * distal phalanx of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32627 ] + * distal phalanx of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first distal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32627 ] + * foot digit 1 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hallux distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004415.md b/md/UBERON/15/UBERON_0004415.md index 8d0a793f53..5dbedca111 100644 --- a/md/UBERON/15/UBERON_0004415.md +++ b/md/UBERON/15/UBERON_0004415.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004415 * *Label* = proximal epiphysis of metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33817] - * basis ossis metatarsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33817[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proximal end of metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33817] - * upper end of metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33817] + * base of metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33817 ] + * basis ossis metatarsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33817, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proximal end of metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33817 ] + * upper end of metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33817 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004515.md b/md/UBERON/15/UBERON_0004515.md index 69b1be4075..93ebdc1bcf 100644 --- a/md/UBERON/15/UBERON_0004515.md +++ b/md/UBERON/15/UBERON_0004515.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004515 * *Label* = smooth muscle tissue of bronchiole - * *Definition* = A portion of smooth muscle tissue that is part of a bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * smooth muscle tissue of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:261081] + * smooth muscle tissue of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:261081 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [bronchiole](../../UBERON/86/UBERON_0002186.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004615.md b/md/UBERON/15/UBERON_0004615.md index 0a7e23558a..17be156804 100644 --- a/md/UBERON/15/UBERON_0004615.md +++ b/md/UBERON/15/UBERON_0004615.md @@ -7,9 +7,9 @@ ## Synonyms - * C6 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12524] - * cervical vertebra 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001426] - * sixth cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12524] + * C6 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12524 ] + * cervical vertebra 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001426 ] + * sixth cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12524 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:12524 * MA:0001426 * SCTID:181826004 - * UMLS:C0459944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C6_Vertebra] + * UMLS:C0459944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C6_Vertebra ] * ncithesaurus:C6_Vertebra ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 6 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004715.md b/md/UBERON/15/UBERON_0004715.md index 61b1b6512c..d064729abb 100644 --- a/md/UBERON/15/UBERON_0004715.md +++ b/md/UBERON/15/UBERON_0004715.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004715 * *Label* = annulus fibrosus disci intervertebralis - * *Definition* = The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003629[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_fibrosus_disci_intervertebralis] + * *Definition* = The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003629, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_fibrosus_disci_intervertebralis ] ## Synonyms - * anulus fibrosus (diskus intervertebralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13551] - * anulus fibrosus of intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13551] - * annulus fibrosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000111] - * annulus fibrosus of intervertebral disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003629] - * fibrous ring of intervertebral disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003629] + * anulus fibrosus (diskus intervertebralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13551 ] + * anulus fibrosus of intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13551 ] + * annulus fibrosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000111 ] + * annulus fibrosus of intervertebral disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003629 ] + * fibrous ring of intervertebral disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003629 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [annulus fibrosus](../../UBERON/44/UBERON_0006444.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004815.md b/md/UBERON/15/UBERON_0004815.md index a73420a8d9..e79666041d 100644 --- a/md/UBERON/15/UBERON_0004815.md +++ b/md/UBERON/15/UBERON_0004815.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004815 * *Label* = lower respiratory tract epithelium - * *Definition* = An epithelium that is part of a lower respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower respiratory tract](../../UBERON/58/UBERON_0001558.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0004915.md b/md/UBERON/15/UBERON_0004915.md index 33fba918e0..7f6515eddf 100644 --- a/md/UBERON/15/UBERON_0004915.md +++ b/md/UBERON/15/UBERON_0004915.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004915 * *Label* = sphincter of hepatopancreatic ampulla - * *Definition* = muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphincter_of_ampulla] + * *Definition* = muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphincter_of_ampulla ] ## Synonyms * Oddi's sphincter - * hepatopancreatic ampullary sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15077] - * musculus sphincter ampullae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15077] + * hepatopancreatic ampullary sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15077 ] + * musculus sphincter ampullae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15077 ] * sphincter of Oddi - * sphincter of ampulla of vater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15077] + * sphincter of ampulla of vater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15077 ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:285 * MESH:A03.159.183.079.300.900.600 * SCTID:181271000 - * UMLS:C0028872 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphincter_of_Oddi] + * UMLS:C0028872 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphincter_of_Oddi ] * Wikipedia:Sphincter_of_ampulla * http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hepatopancreatic ampulla](../../UBERON/13/UBERON_0004913.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005015.md b/md/UBERON/15/UBERON_0005015.md index 410cdbfbd6..0b20e658aa 100644 --- a/md/UBERON/15/UBERON_0005015.md +++ b/md/UBERON/15/UBERON_0005015.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005015 * *Label* = mucosa of prostatic urethra - * *Definition* = A mucosa that is part of a prostatic urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a prostatic urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of prostatic part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of prostatic urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of prostatic part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of prostatic part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of prostatic urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of prostatic part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of prostatic urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic part of urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic part of urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic part of urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic part of urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic urethral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77079] - * tunica mucosa urethrae prosticae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77079[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mucosa of organ of prostatic part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of prostatic urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of prostatic part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of prostatic part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of prostatic urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of prostatic part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of prostatic urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic part of urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic part of urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic part of urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic part of urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic urethral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77079 ] + * tunica mucosa urethrae prosticae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77079, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostatic urethra](../../UBERON/35/UBERON_0001335.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005115.md b/md/UBERON/15/UBERON_0005115.md index 86df83da39..13e968e760 100644 --- a/md/UBERON/15/UBERON_0005115.md +++ b/md/UBERON/15/UBERON_0005115.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005115 * *Label* = metanephric cortical collecting duct - * *Definition* = The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072219] + * *Definition* = The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072219 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortical collecting duct](../../UBERON/03/UBERON_0004203.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005215.md b/md/UBERON/15/UBERON_0005215.md index 6ea4b3dbeb..898053295e 100644 --- a/md/UBERON/15/UBERON_0005215.md +++ b/md/UBERON/15/UBERON_0005215.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005215 * *Label* = kidney interstitium - * *Definition* = The interstitium of the kidney comprises the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances. As we define it here, the interstitium is bounded on all sides by tubular and vascular basement membranes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/ki.1991.49] + * *Definition* = The interstitium of the kidney comprises the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances. As we define it here, the interstitium is bounded on all sides by tubular and vascular basement membranes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/ki.1991.49 ] ## Synonyms - * renal interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70983] - * renal stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70983] - * stroma of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70983] + * renal interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70983 ] + * renal stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70983 ] + * stroma of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70983 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005315.md b/md/UBERON/15/UBERON_0005315.md index 6d4c760708..012f5732e9 100644 --- a/md/UBERON/15/UBERON_0005315.md +++ b/md/UBERON/15/UBERON_0005315.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005315 * *Label* = alveolar secondary septum - * *Definition* = A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061144] + * *Definition* = A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061144 ] * *Comment* = TODO - check UBERON:0004893 interalveolar septum ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005415.md b/md/UBERON/15/UBERON_0005415.md index a32b0c1448..cf11e18995 100644 --- a/md/UBERON/15/UBERON_0005415.md +++ b/md/UBERON/15/UBERON_0005415.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005415 * *Label* = zone of polarizing activity of pectoral appendage - * *Definition* = A zone of polarizing activity that is part of a pectoral appendage bud mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of polarizing activity that is part of a pectoral appendage bud mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * anterior ZPA * fore ZPA * pectoral ZPA - * zone of polarizing activity pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001451] + * zone of polarizing activity pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001451 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage bud mesenchyme](../../UBERON/13/UBERON_0003413.md) and [zone of polarizing activity](../../UBERON/14/UBERON_0005414.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small group of mesodermal cells located at the posterior margin of the developing fin bud. the ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. Gibert et al., 2006.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005515.md b/md/UBERON/15/UBERON_0005515.md index ce01498494..71a2db8d69 100644 --- a/md/UBERON/15/UBERON_0005515.md +++ b/md/UBERON/15/UBERON_0005515.md @@ -6,7 +6,7 @@ ## Synonyms - * r5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000823] + * r5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000823 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005615.md b/md/UBERON/15/UBERON_0005615.md index 2371951da2..b4334ae53c 100644 --- a/md/UBERON/15/UBERON_0005615.md +++ b/md/UBERON/15/UBERON_0005615.md @@ -31,8 +31,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0005815.md b/md/UBERON/15/UBERON_0005815.md index e7dd980597..647565afd2 100644 --- a/md/UBERON/15/UBERON_0005815.md +++ b/md/UBERON/15/UBERON_0005815.md @@ -6,9 +6,9 @@ ## Synonyms - * anterior costal tubercle of transverse process of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24126] - * anterior tubercle of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24126] - * tuberculum cervicales anterius vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24126[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior costal tubercle of transverse process of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24126 ] + * anterior tubercle of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24126 ] + * tuberculum cervicales anterius vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24126, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006015.md b/md/UBERON/15/UBERON_0006015.md index ba0971cbac..822bbd54a2 100644 --- a/md/UBERON/15/UBERON_0006015.md +++ b/md/UBERON/15/UBERON_0006015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006015 * *Label* = webbed interdigital region - * *Definition* = Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interdigital_webbing] + * *Definition* = Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interdigital_webbing ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006115.md b/md/UBERON/15/UBERON_0006115.md index 2fd0aeef33..fa62364115 100644 --- a/md/UBERON/15/UBERON_0006115.md +++ b/md/UBERON/15/UBERON_0006115.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006115 * *Label* = posterior column of fornix - * *Definition* = Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_754] + * *Definition* = Part of fornix adjacent to the fimbria comprising flattened bands of fibers that extend from the fimbria, running underneath the corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_754 ] ## Synonyms - * crus fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61969[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61969] - * crus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_754] - * posterior column of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_754] - * posterior column of fornix of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61969] - * posterior crus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61969] - * posterior crus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_754] - * posterior pillar of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61969] - * posterior pillar of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_754] + * crus fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61969, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61969 ] + * crus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_754 ] + * posterior column of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_754 ] + * posterior column of fornix of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61969 ] + * posterior crus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61969 ] + * posterior crus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_754 ] + * posterior pillar of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61969 ] + * posterior pillar of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_754 ] ## Cross-references @@ -25,7 +25,7 @@ * NIF_GrossAnatomy:birnlex_754 * NeuroNames:272 * SCTID:369116002 - * UMLS:C0228288 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_754] + * UMLS:C0228288 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_754 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006215.md b/md/UBERON/15/UBERON_0006215.md index 6b1e6f28ba..8eedc59429 100644 --- a/md/UBERON/15/UBERON_0006215.md +++ b/md/UBERON/15/UBERON_0006215.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006215 * *Label* = rhombic lip - * *Definition* = The posterior section of the developing metencephalon within an embryo, extending posteriorly from the roof of the fourth ventricle to dorsal neuroepithelial cell and can be divided into eight structural units based on rhombomeres 1-8 (r1-r8), recognized at early stages of hindbrain development; producing granule cells and five brainstem nuclei, the rhombic lip plays an important role in developing a complex cerebellar neural system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhombic_lips] + * *Definition* = The posterior section of the developing metencephalon within an embryo, extending posteriorly from the roof of the fourth ventricle to dorsal neuroepithelial cell and can be divided into eight structural units based on rhombomeres 1-8 (r1-r8), recognized at early stages of hindbrain development; producing granule cells and five brainstem nuclei, the rhombic lip plays an important role in developing a complex cerebellar neural system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhombic_lips ] ## Synonyms - * cerebellar anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] - * cerebellum primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000231[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17074] - * dorsal part of alar plate of metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17074] - * future cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * presumptive cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] - * rostral rhombic lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] + * cerebellar anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] + * cerebellum primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000231, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17074 ] + * dorsal part of alar plate of metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17074 ] + * future cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * presumptive cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] + * rostral rhombic lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013163 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006615.md b/md/UBERON/15/UBERON_0006615.md index 33651d06cd..2731a3ade6 100644 --- a/md/UBERON/15/UBERON_0006615.md +++ b/md/UBERON/15/UBERON_0006615.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006615 * *Label* = venous sinus - * *Definition* = a large vein or channel for the circulation of venous blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/venous+sinus] + * *Definition* = a large vein or channel for the circulation of venous blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/venous+sinus ] * *Comment* = todo - add subclasses ## Synonyms @@ -13,7 +13,7 @@ * MA:0000070 * SCTID:341586007 - * UMLS:C0226504 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venous_Sinus] + * UMLS:C0226504 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venous_Sinus ] * ncithesaurus:Venous_Sinus ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006715.md b/md/UBERON/15/UBERON_0006715.md index 3b1da193d6..5ece8a7f32 100644 --- a/md/UBERON/15/UBERON_0006715.md +++ b/md/UBERON/15/UBERON_0006715.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006715 * *Label* = radio-ulna - * *Definition* = Paired, long bones of endochondral origin formed by the fusion of the radius and ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Maglia_et_al_2007] + * *Definition* = Paired, long bones of endochondral origin formed by the fusion of the radius and ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Maglia_et_al_2007 ] ## Synonyms - * radioulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003209] + * radioulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003209 ] * radius+ulna - * radius-ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003209] + * radius-ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003209 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [radius-ulna endochondral element](../../UBERON/02/UBERON_0015002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006815.md b/md/UBERON/15/UBERON_0006815.md index 2080120286..0168f979a7 100644 --- a/md/UBERON/15/UBERON_0006815.md +++ b/md/UBERON/15/UBERON_0006815.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006815 * *Label* = areolar connective tissue - * *Definition* = Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63897[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63897, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms - * loose areolar connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63897] - * loose connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000027] + * loose areolar connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63897 ] + * loose connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000027 ] ## Cross-references @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Also known as loose connective tissue. A pliable, mesh-like tissue with a fluid matrix that functions to cushion and protect body organs.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass connective tissue proper (AAO:0000099)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0006915.md b/md/UBERON/15/UBERON_0006915.md index af9725dc97..98f0b8f65d 100644 --- a/md/UBERON/15/UBERON_0006915.md +++ b/md/UBERON/15/UBERON_0006915.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006915 * *Label* = stratified squamous epithelium - * *Definition* = Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45563[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_squamous_epithelium] + * *Definition* = Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45563, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_squamous_epithelium ] ## Synonyms - * epithelium stratificatum squamosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45563] + * epithelium stratificatum squamosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45563 ] ## Cross-references * FMA:45563 - * UMLS:C0836131 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratified_Squamous_Epithelium] + * UMLS:C0836131 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratified_Squamous_Epithelium ] * Wikipedia:Stratified_squamous_epithelium * ncithesaurus:Stratified_Squamous_Epithelium @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [squamous epithelial cell](../../CL/76/CL_0000076.md) and [multilaminar epithelium](../../UBERON/86/UBERON_0000486.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007115.md b/md/UBERON/15/UBERON_0007115.md index ed77a8bdd7..593f852ed8 100644 --- a/md/UBERON/15/UBERON_0007115.md +++ b/md/UBERON/15/UBERON_0007115.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007115 * *Label* = deciduous tooth - * *Definition* = One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.860.700[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deciduous_teeth] + * *Definition* = One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.860.700, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deciduous_teeth ] * *Comment* = GAT in FMA. ## Synonyms - * primary tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55655] - * temporary tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55655] - * dentes decidui [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deciduous_teeth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * primary tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55655 ] + * temporary tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55655 ] + * dentes decidui [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deciduous_teeth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:1266 * MESH:A14.254.860.700 * SCTID:245612004 - * UMLS:C0040455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporary_Tooth] + * UMLS:C0040455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporary_Tooth ] * Wikipedia:Deciduous_teeth * http://upload.wikimedia.org/wikipedia/commons/9/97/Deciduous_teeth_by_David_Shankbone.jpg * ncithesaurus:Temporary_Tooth @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [part_of](../../BFO/50/BFO_0000050.md) some [primary dentition](../../UBERON/16/UBERON_0007116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007215.md b/md/UBERON/15/UBERON_0007215.md index e8c3535df3..cdd538ecc1 100644 --- a/md/UBERON/15/UBERON_0007215.md +++ b/md/UBERON/15/UBERON_0007215.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007215 * *Label* = trabecula cranii - * *Definition* = Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = A paired cartilage element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006) ## Synonyms - * trabeculae cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * trabeculae cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007315.md b/md/UBERON/15/UBERON_0007315.md index 8465feae75..ffd53bc9ab 100644 --- a/md/UBERON/15/UBERON_0007315.md +++ b/md/UBERON/15/UBERON_0007315.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007315 * *Label* = internal pudendal artery - * *Definition* = The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_pudendal_artery] + * *Definition* = The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_pudendal_artery ] ## Synonyms - * arteria pudenda interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_pudendal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal pudendal vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_pudendal_artery] - * internal pudic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_pudendal_artery] + * arteria pudenda interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_pudendal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal pudendal vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_pudendal_artery ] + * internal pudic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_pudendal_artery ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007415.md b/md/UBERON/15/UBERON_0007415.md index 5779a1c404..a944b71d81 100644 --- a/md/UBERON/15/UBERON_0007415.md +++ b/md/UBERON/15/UBERON_0007415.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007415 * *Label* = nucleus of midbrain reticular formation - * *Definition* = A nucleus of midbrain tegmentum that is part of a midbrain reticular formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of midbrain tegmentum that is part of a midbrain reticular formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain reticular formation nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62443] - * midbrain reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:MRN] - * Mesencephalic reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MRN] - * mesencephalic reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MRN] + * midbrain reticular formation nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62443 ] + * midbrain reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:MRN ] + * Mesencephalic reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MRN ] + * mesencephalic reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MRN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of midbrain tegmentum](../../UBERON/14/UBERON_0007414.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain reticular formation](../../UBERON/39/UBERON_0002639.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007615.md b/md/UBERON/15/UBERON_0007615.md index 9cae59d3d7..ddee5d0b2e 100644 --- a/md/UBERON/15/UBERON_0007615.md +++ b/md/UBERON/15/UBERON_0007615.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007615 * *Label* = prostate gland ventral lobe - * *Definition* = Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15163300] + * *Definition* = Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15163300 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0007715.md b/md/UBERON/15/UBERON_0007715.md index e04b7d5f27..6f89c20be0 100644 --- a/md/UBERON/15/UBERON_0007715.md +++ b/md/UBERON/15/UBERON_0007715.md @@ -6,7 +6,7 @@ ## Synonyms - * segment part of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_892] + * segment part of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_892 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0008115.md b/md/UBERON/15/UBERON_0008115.md index afc88ffecc..549b7bdc62 100644 --- a/md/UBERON/15/UBERON_0008115.md +++ b/md/UBERON/15/UBERON_0008115.md @@ -6,7 +6,7 @@ ## Synonyms - * cartilage surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76668] + * cartilage surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76668 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0008715.md b/md/UBERON/15/UBERON_0008715.md index c1bf967934..ddaf3557d1 100644 --- a/md/UBERON/15/UBERON_0008715.md +++ b/md/UBERON/15/UBERON_0008715.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008715 * *Label* = muscle tissue of prostate - * *Definition* = A muscle tissue that is part of a prostate gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle tissue that is part of a prostate gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * prostate gland muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * prostate gland muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references - * UMLS:C1183911 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Muscular_Tissue] + * UMLS:C1183911 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Muscular_Tissue ] * ncithesaurus:Prostatic_Muscular_Tissue ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle tissue](../../UBERON/85/UBERON_0002385.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0008815.md b/md/UBERON/15/UBERON_0008815.md index d08404610d..cd2d2fb741 100644 --- a/md/UBERON/15/UBERON_0008815.md +++ b/md/UBERON/15/UBERON_0008815.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008815 * *Label* = pharyngeal slit - * *Definition* = filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_slit] + * *Definition* = filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_slit ] * *Comment* = Editor/Taxon notes: requires review. Kardong uses the term pharyngeal slit for Chondrichthyans. 'branchial slit' may also be used for aminiote structures? ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0008915.md b/md/UBERON/15/UBERON_0008915.md index 33574a8535..fbe5d27d1a 100644 --- a/md/UBERON/15/UBERON_0008915.md +++ b/md/UBERON/15/UBERON_0008915.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008915 * *Label* = pore - * *Definition* = An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -12,7 +12,7 @@ * AAO:0010441 * TAO:0001791 - * UMLS:C1325742 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pore] + * UMLS:C1325742 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pore ] * ZFA:0005449 * ncithesaurus:Pore @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0009015.md b/md/UBERON/15/UBERON_0009015.md index c8d1e937c6..b725aa4a60 100644 --- a/md/UBERON/15/UBERON_0009015.md +++ b/md/UBERON/15/UBERON_0009015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009015 * *Label* = upper back skin - * *Definition* = A zone of skin that is part of a dorsal thoracic segment of trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a dorsal thoracic segment of trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal thoracic segment of trunk](../../UBERON/31/UBERON_0008231.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0009115.md b/md/UBERON/15/UBERON_0009115.md index b59bbd10f9..d354d613a1 100644 --- a/md/UBERON/15/UBERON_0009115.md +++ b/md/UBERON/15/UBERON_0009115.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009115 * *Label* = thoracic thymus - * *Definition* = A mature thymus that is entirely part of thoracic region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A mature thymus that is entirely part of thoracic region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0009215.md b/md/UBERON/15/UBERON_0009215.md index 1345d56c23..b8e2dc64e1 100644 --- a/md/UBERON/15/UBERON_0009215.md +++ b/md/UBERON/15/UBERON_0009215.md @@ -6,7 +6,7 @@ ## Synonyms - * 2nd pharyngeal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000877] + * 2nd pharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000877 ] ## Cross-references @@ -20,8 +20,8 @@ * [pharyngeal membrane](../../UBERON/10/UBERON_0009210.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [2nd arch pharyngeal cleft](../../UBERON/73/UBERON_0005873.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal pouch 2](../../UBERON/23/UBERON_0007123.md) ## Equivalencies @@ -33,8 +33,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0009615.md b/md/UBERON/15/UBERON_0009615.md index 23084ae604..b4c39a36ac 100644 --- a/md/UBERON/15/UBERON_0009615.md +++ b/md/UBERON/15/UBERON_0009615.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009615 * *Label* = midbrain hindbrain boundary neural plate - * *Definition* = An embryonic midbrain hindbrain boundary that is part of a neural plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An embryonic midbrain hindbrain boundary that is part of a neural plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo: developmental relationships for lines ## Synonyms - * MHB neural plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * midbrain-hindbrain boundary neural plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007044] + * MHB neural plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * midbrain-hindbrain boundary neural plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007044 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [embryonic midbrain hindbrain boundary](../../UBERON/74/UBERON_0009774.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neural plate](../../UBERON/75/UBERON_0003075.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0009715.md b/md/UBERON/15/UBERON_0009715.md index bdb597281f..84800aad27 100644 --- a/md/UBERON/15/UBERON_0009715.md +++ b/md/UBERON/15/UBERON_0009715.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009715 * *Label* = stomodeal lumen - * *Definition* = An anatomical cavity that surrounded_by a stomodeum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a stomodeum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [stomodeum](../../UBERON/30/UBERON_0000930.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0010015.md b/md/UBERON/15/UBERON_0010015.md index 42c18e50e9..2fe1e34505 100644 --- a/md/UBERON/15/UBERON_0010015.md +++ b/md/UBERON/15/UBERON_0010015.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0010115.md b/md/UBERON/15/UBERON_0010115.md index 0c25698ec9..40482e5076 100644 --- a/md/UBERON/15/UBERON_0010115.md +++ b/md/UBERON/15/UBERON_0010115.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010115 * *Label* = future dura mater - * *Definition* = A meninx that has_potential_to_develop_into a dura mater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that has_potential_to_develop_into a dura mater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [dura mater](../../UBERON/63/UBERON_0002363.md) and [meninx](../../UBERON/60/UBERON_0002360.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0010215.md b/md/UBERON/15/UBERON_0010215.md index 17e1ce18de..cb8af551fa 100644 --- a/md/UBERON/15/UBERON_0010215.md +++ b/md/UBERON/15/UBERON_0010215.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010215 * *Label* = arytenoid swellings - * *Definition* = paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=87317] + * *Definition* = paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=87317 ] * *Comment* = AO notes - EHDAA2 and EMAPA appear to be inconsistent ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0010415.md b/md/UBERON/15/UBERON_0010415.md index 4665018536..5446a0fd71 100644 --- a/md/UBERON/15/UBERON_0010415.md +++ b/md/UBERON/15/UBERON_0010415.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010415 * *Label* = barrel cortex - * *Definition* = dark-staining regions of layer four of the somatosensory cortex where somatosensory inputs from the contralateral side of the body come in from the thalamus. Barrels are found in some species of rodents and species of at least two other orders. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = dark-staining regions of layer four of the somatosensory cortex where somatosensory inputs from the contralateral side of the body come in from the thalamus. Barrels are found in some species of rodents and species of at least two other orders. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] * *Comment* = The term barrel field of the primary somatosensory area refers to one of 6 subdivisions of the primary somesthetic area of the cerebral cortex in the mouse ( Dong-2004 ) and the rat ( Swanson-2004 ). The other five are the lower limb of the primary somatosensory area, the mouth of the primary somatosensory area, the nose of the primary somatosensory area, the trunk of the primary somatosensory area and the upper limb of the primary somatosensory area. -- http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2703 ## Synonyms - * primary somatosensory area barrel field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SS-bfd] - * primary somatosensory area barrel field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SSp-bfd] - * primary somatosensory area, barrel field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:SSp-bfd] + * primary somatosensory area barrel field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SS-bfd ] + * primary somatosensory area barrel field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SSp-bfd ] + * primary somatosensory area, barrel field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:SSp-bfd ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0010515.md b/md/UBERON/15/UBERON_0010515.md index 06bd93bdc1..f609bbc913 100644 --- a/md/UBERON/15/UBERON_0010515.md +++ b/md/UBERON/15/UBERON_0010515.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010515 * *Label* = brille - * *Definition* = layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brille] + * *Definition* = layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brille ] * *Comment* = Taxon notes: In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a "glassy-eyed" blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids. ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011015.md b/md/UBERON/15/UBERON_0011015.md index ab0275905f..161f84ef41 100644 --- a/md/UBERON/15/UBERON_0011015.md +++ b/md/UBERON/15/UBERON_0011015.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011215.md b/md/UBERON/15/UBERON_0011215.md index 4dd905418b..f746cffa35 100644 --- a/md/UBERON/15/UBERON_0011215.md +++ b/md/UBERON/15/UBERON_0011215.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011215 * *Label* = cell part cluster of neuraxis - * *Definition* = A multi cell component structure that is part of a central nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi cell component structure that is part of a central nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neuraxis layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83143] + * neuraxis layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83143 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi cell component structure](../../UBERON/62/UBERON_0005162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central nervous system](../../UBERON/17/UBERON_0001017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011215 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011315.md b/md/UBERON/15/UBERON_0011315.md index c49052703d..0865338cee 100644 --- a/md/UBERON/15/UBERON_0011315.md +++ b/md/UBERON/15/UBERON_0011315.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011315 * *Label* = digastric branch of facial nerve - * *Definition* = The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_part_of_facial_nerve] + * *Definition* = The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_part_of_facial_nerve ] ## Synonyms - * digastric branch of facial nerve (CN VII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * digastric branch of facial nerve (CN VII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] * facial nerve, digastric branch - * nerve to posterior belly of digastric [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53288] - * ramus digastricus (nervus facialis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53288] - * ramus digastricus nervus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * digastric branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_part_of_facial_nerve] - * branch of facial nerve to posterior belly of digastric [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53288] + * nerve to posterior belly of digastric [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53288 ] + * ramus digastricus (nervus facialis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53288 ] + * ramus digastricus nervus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digastric branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_part_of_facial_nerve ] + * branch of facial nerve to posterior belly of digastric [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53288 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011415.md b/md/UBERON/15/UBERON_0011415.md index a77b813df7..8f5dbcc18c 100644 --- a/md/UBERON/15/UBERON_0011415.md +++ b/md/UBERON/15/UBERON_0011415.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011415 * *Label* = cutaneous trunci muscle - * *Definition* = Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2210] + * *Definition* = Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2210 ] * *Comment* = covers the entire body with a thin layer of muscle under the deepest layer of the skin. When an area of neuronal subluxation is stimulated with the activator, the cutaneous trunci muscle contracts and causes an involuntary reflexive spasm or "twitch" of the skin ## Synonyms - * cutaneous trunci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002285] + * cutaneous trunci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002285 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011415 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011615.md b/md/UBERON/15/UBERON_0011615.md index be07e00b62..db9742ea21 100644 --- a/md/UBERON/15/UBERON_0011615.md +++ b/md/UBERON/15/UBERON_0011615.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011615 * *Label* = basihyal cartilage - * *Definition* = Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001510] + * *Definition* = Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001510 ] ## Synonyms - * copula 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001510] + * copula 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001510 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0011915.md b/md/UBERON/15/UBERON_0011915.md index 8573f5ec43..5595dd9132 100644 --- a/md/UBERON/15/UBERON_0011915.md +++ b/md/UBERON/15/UBERON_0011915.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011915 * *Label* = cerebellar glomerulus - * *Definition* = An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0838580343[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004099] + * *Definition* = An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0838580343, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004099 ] ## Synonyms - * cerebellar glomeruli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cerebellar glomeruli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural glomerulus](../../UBERON/47/UBERON_0001047.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0012115.md b/md/UBERON/15/UBERON_0012115.md index 766b72c5dc..b802817882 100644 --- a/md/UBERON/15/UBERON_0012115.md +++ b/md/UBERON/15/UBERON_0012115.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012115 * *Label* = dental comb - * *Definition* = a dental structure found in some mammals, comprising a group of front teeth arranged in a manner that facilitates grooming. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toothcomb] + * *Definition* = a dental structure found in some mammals, comprising a group of front teeth arranged in a manner that facilitates grooming. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toothcomb ] * *Comment* = Taxon notes: The toothcomb occurs in lemuriform primates (which includes lemurs and lorisoids), treeshrews, colugos, hyraxes, and some African antelopes. The structures evolved independently in different types of mammals through convergent evolution and vary both in dental composition and structure. In most mammals the comb is formed by a group of teeth with fine spaces between them. The toothcombs in most mammals include incisors only, while in lemuriform primates they include incisors and canine teeth that tilt forward at the front of the lower jaw, followed by a canine-shaped first premolar. The toothcombs of colugos and hyraxes take a different form with the individual incisors being serrated, providing multiple tines per tooth ## Synonyms - * tooth comb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toothcomb] - * toothcomb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toothcomb] + * tooth comb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toothcomb ] + * toothcomb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toothcomb ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0012315.md b/md/UBERON/15/UBERON_0012315.md index b7fb5b78d1..fc0ddc7b29 100644 --- a/md/UBERON/15/UBERON_0012315.md +++ b/md/UBERON/15/UBERON_0012315.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012315 * *Label* = incisive foramen - * *Definition* = the point where the primary palate and both palatine shelves fuse. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_foramen[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://missinglink.ucsf.edu/restricted/lm/CongenitalAnomalies/CleftLipPalate.html] + * *Definition* = the point where the primary palate and both palatine shelves fuse. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_foramen, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://missinglink.ucsf.edu/restricted/lm/CongenitalAnomalies/CleftLipPalate.html ] ## Synonyms - * Stenson's foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75305] - * foramina incisiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_foramen] - * incisive foramina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_foramen] - * incisive fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_foramen] + * Stenson's foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75305 ] + * foramina incisiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_foramen ] + * incisive foramina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_foramen ] + * incisive fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_foramen ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012315 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0012615.md b/md/UBERON/15/UBERON_0012615.md index 1dbb3e122c..9f754d982a 100644 --- a/md/UBERON/15/UBERON_0012615.md +++ b/md/UBERON/15/UBERON_0012615.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0013115.md b/md/UBERON/15/UBERON_0013115.md index 5918bff861..4cf4e0f80b 100644 --- a/md/UBERON/15/UBERON_0013115.md +++ b/md/UBERON/15/UBERON_0013115.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0013515.md b/md/UBERON/15/UBERON_0013515.md index fc819bf192..29d5d59afb 100644 --- a/md/UBERON/15/UBERON_0013515.md +++ b/md/UBERON/15/UBERON_0013515.md @@ -6,10 +6,10 @@ ## Synonyms - * subdivision of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18302] - * uterine tube zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18302] - * zone of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18302] - * subdivision of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18302] + * subdivision of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18302 ] + * uterine tube zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18302 ] + * zone of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18302 ] + * subdivision of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18302 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013515 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0013615.md b/md/UBERON/15/UBERON_0013615.md index 743c57e6d2..436680c597 100644 --- a/md/UBERON/15/UBERON_0013615.md +++ b/md/UBERON/15/UBERON_0013615.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0013715.md b/md/UBERON/15/UBERON_0013715.md index 991151b216..4529c94bc6 100644 --- a/md/UBERON/15/UBERON_0013715.md +++ b/md/UBERON/15/UBERON_0013715.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013715 * *Label* = ilio-marsupialis muscle - * *Definition* = A muscle that originates on the anterior iliac spine that passes through the inguinal canal before dividing into four branches, each attaching to a pouch nipple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12432001[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A muscle that originates on the anterior iliac spine that passes through the inguinal canal before dividing into four branches, each attaching to a pouch nipple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12432001, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Associated with lumbar musculature. originally postulated to be involved in mile ejection, or for mammary support and for retraction of the teats. ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013715 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0014615.md b/md/UBERON/15/UBERON_0014615.md index 873a171695..d368cf00e2 100644 --- a/md/UBERON/15/UBERON_0014615.md +++ b/md/UBERON/15/UBERON_0014615.md @@ -6,26 +6,26 @@ ## Synonyms - * accessory nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1580[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * accessory nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1580, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] * root of accessory nerve - * c11n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1580[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * accessory portion of spinal accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * bulbar accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * bulbar part of accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * cranial accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * cranial part of accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:c11n] - * cranial part of the accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * cranial portion of eleventh cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * internal branch of accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * nerve XI (cranialis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703] - * pars vagalis of nervus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radices craniales nervi accessorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:703[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * c11n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1580, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * accessory portion of spinal accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * bulbar accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * bulbar part of accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * cranial accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * cranial part of accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:c11n ] + * cranial part of the accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * cranial portion of eleventh cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * internal branch of accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * nerve XI (cranialis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703 ] + * pars vagalis of nervus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radices craniales nervi accessorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:703, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:c11n * NIF_GrossAnatomy:birnlex_1580 - * NeuroNames:703 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1580] + * NeuroNames:703 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1580 ] * SCTID:280187004 ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve root](../../UBERON/11/UBERON_0002211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [accessory XI nerve](../../UBERON/19/UBERON_0002019.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014615 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0014915.md b/md/UBERON/15/UBERON_0014915.md index d80427d907..9200094161 100644 --- a/md/UBERON/15/UBERON_0014915.md +++ b/md/UBERON/15/UBERON_0014915.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014915 * *Label* = genu of facial nerve - * *Definition* = the bend in the facial nerve at the lateral end of the internal acoustic meatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve] + * *Definition* = the bend in the facial nerve at the lateral end of the internal acoustic meatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/genu+of+facial+nerve ] ## Synonyms - * genu nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * first genu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72510] - * internal genu of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72510] - * Nervus facialis (Genu) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * first genu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] - * genu internum n. faciales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * genu nervi facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * genu of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] - * genu of the facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] - * internal genu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] - * internal genu of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] - * internal genu of the facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:581] + * genu nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * first genu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72510 ] + * internal genu of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72510 ] + * Nervus facialis (Genu) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * first genu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] + * genu internum n. faciales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * genu nervi facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * genu of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] + * genu of the facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] + * internal genu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] + * internal genu of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] + * internal genu of the facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:581 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014915 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0015015.md b/md/UBERON/15/UBERON_0015015.md index 27f3ceb5d6..d4dbccdd7e 100644 --- a/md/UBERON/15/UBERON_0015015.md +++ b/md/UBERON/15/UBERON_0015015.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015015 * *Label* = supraoccipital endochondral element - * *Definition* = A supraoccipital bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A supraoccipital bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * supraoccipital element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * supraoccipital skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * supraoccipital element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * supraoccipital skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [supraoccipital bone](../../UBERON/47/UBERON_0004747.md)or[supraoccipital cartilage element](../../UBERON/62/UBERON_0011162.md)or[supraoccipital pre-cartilage condensation](../../UBERON/63/UBERON_0011163.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_0015115.md b/md/UBERON/15/UBERON_0015115.md index 5bd82f15d2..025088689d 100644 --- a/md/UBERON/15/UBERON_0015115.md +++ b/md/UBERON/15/UBERON_0015115.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal tarsal bone 5 endochondral element](../../UBERON/14/UBERON_0015114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015115 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_1000015.md b/md/UBERON/15/UBERON_1000015.md index 55ba8da5a7..798737eb1e 100644 --- a/md/UBERON/15/UBERON_1000015.md +++ b/md/UBERON/15/UBERON_1000015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000015 * *Label* = skin of snout - * *Definition* = A zone of skin that is part of the snout. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A zone of skin that is part of the snout. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [snout](../../UBERON/33/UBERON_0006333.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000015 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2000315.md b/md/UBERON/15/UBERON_2000315.md index 8095bff14d..d17ebd489f 100644 --- a/md/UBERON/15/UBERON_2000315.md +++ b/md/UBERON/15/UBERON_2000315.md @@ -6,8 +6,8 @@ ## Synonyms - * lagenar otolith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000315] - * lagenolith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000315] + * lagenar otolith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000315 ] + * lagenolith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000315 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2000615.md b/md/UBERON/15/UBERON_2000615.md index 43c0482b16..d2472823de 100644 --- a/md/UBERON/15/UBERON_2000615.md +++ b/md/UBERON/15/UBERON_2000615.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2000715.md b/md/UBERON/15/UBERON_2000715.md index e909d107dc..aca50db4d7 100644 --- a/md/UBERON/15/UBERON_2000715.md +++ b/md/UBERON/15/UBERON_2000715.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2000815.md b/md/UBERON/15/UBERON_2000815.md index cdf3d8f63b..d541d5aeee 100644 --- a/md/UBERON/15/UBERON_2000815.md +++ b/md/UBERON/15/UBERON_2000815.md @@ -6,8 +6,8 @@ ## Synonyms - * nucleus of MLF medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * nucleus of the medial longitudinal fasciculus medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000815] + * nucleus of MLF medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * nucleus of the medial longitudinal fasciculus medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000815 ] ## Cross-references @@ -23,7 +23,7 @@ * [nucleus of medulla oblongata](../../UBERON/35/UBERON_0007635.md) * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medial longitudinal fasciculus of medulla](../../UBERON/50/UBERON_0002750.md) ## Equivalencies @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2000815 + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2000915.md b/md/UBERON/15/UBERON_2000915.md index a4c9acd544..5da20aee88 100644 --- a/md/UBERON/15/UBERON_2000915.md +++ b/md/UBERON/15/UBERON_2000915.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000915[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000915, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/15/UBERON_2001015.md b/md/UBERON/15/UBERON_2001015.md index 6695a7ec2b..81add4b221 100644 --- a/md/UBERON/15/UBERON_2001015.md +++ b/md/UBERON/15/UBERON_2001015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001015 * *Label* = myotome somite 17 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. immel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. immel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001415.md b/md/UBERON/15/UBERON_2001415.md index ffe18a9937..dd8faf53c8 100644 --- a/md/UBERON/15/UBERON_2001415.md +++ b/md/UBERON/15/UBERON_2001415.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001415 * *Label* = pelvic fin distal radial bone 2 - * *Definition* = pelvic fin distal radial 2 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 2 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pelvic fin distal radial element 2](../../UBERON/15/UBERON_2101415.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001515.md b/md/UBERON/15/UBERON_2001515.md index f677d0ef77..4ffe13bfd7 100644 --- a/md/UBERON/15/UBERON_2001515.md +++ b/md/UBERON/15/UBERON_2001515.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001515 * *Label* = taenia marginalis posterior - * *Definition* = Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * orbital cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001515] + * orbital cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001515 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001615.md b/md/UBERON/15/UBERON_2001615.md index c2a153cf8c..7c776a7df1 100644 --- a/md/UBERON/15/UBERON_2001615.md +++ b/md/UBERON/15/UBERON_2001615.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001615 * *Label* = sphenotic spine - * *Definition* = Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * sphenotic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001615] + * sphenotic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001615 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001715.md b/md/UBERON/15/UBERON_2001715.md index ccf0c96138..9c42751230 100644 --- a/md/UBERON/15/UBERON_2001715.md +++ b/md/UBERON/15/UBERON_2001715.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001715 * *Label* = caudal principal ray 3 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001815.md b/md/UBERON/15/UBERON_2001815.md index 129cce65cc..4839903422 100644 --- a/md/UBERON/15/UBERON_2001815.md +++ b/md/UBERON/15/UBERON_2001815.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001815 * *Label* = nuchal plate - * *Definition* = Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2001915.md b/md/UBERON/15/UBERON_2001915.md index 5085dd9428..d6cba153c9 100644 --- a/md/UBERON/15/UBERON_2001915.md +++ b/md/UBERON/15/UBERON_2001915.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001915 * *Label* = basibranchial 1 element - * *Definition* = Skeletal element that is median and associated with branchial arch 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is median and associated with branchial arch 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2002015.md b/md/UBERON/15/UBERON_2002015.md index 00ee8729d0..eaa12761b5 100644 --- a/md/UBERON/15/UBERON_2002015.md +++ b/md/UBERON/15/UBERON_2002015.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002015 * *Label* = pharyngobranchial tooth plate - * *Definition* = Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngobranchial toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002015] + * pharyngobranchial toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002015 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2002115.md b/md/UBERON/15/UBERON_2002115.md index c3c19c5d89..a861c4e3d1 100644 --- a/md/UBERON/15/UBERON_2002115.md +++ b/md/UBERON/15/UBERON_2002115.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2002215.md b/md/UBERON/15/UBERON_2002215.md index 658e04430f..ec58384915 100644 --- a/md/UBERON/15/UBERON_2002215.md +++ b/md/UBERON/15/UBERON_2002215.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2005015.md b/md/UBERON/15/UBERON_2005015.md index d45cc7cf1e..4756f2d505 100644 --- a/md/UBERON/15/UBERON_2005015.md +++ b/md/UBERON/15/UBERON_2005015.md @@ -6,8 +6,8 @@ ## Synonyms - * AFL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005015] - * afferent lamellar arterioles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005015[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * AFL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005015 ] + * afferent lamellar arterioles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005015, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2005115.md b/md/UBERON/15/UBERON_2005115.md index c41a22a78a..65408fed35 100644 --- a/md/UBERON/15/UBERON_2005115.md +++ b/md/UBERON/15/UBERON_2005115.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005115 * *Label* = primary posterior lateral line primordium - * *Definition* = Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * primI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005115] - * primary posterior lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005115[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * primI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005115 ] + * primary posterior lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005115, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2005215.md b/md/UBERON/15/UBERON_2005215.md index eb95909f6e..d5be796558 100644 --- a/md/UBERON/15/UBERON_2005215.md +++ b/md/UBERON/15/UBERON_2005215.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon lateral medial interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005215] + * mesencephalon lateral medial interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005215 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/15/UBERON_2005415.md b/md/UBERON/15/UBERON_2005415.md index f9a2e2db3d..ebc63028a2 100644 --- a/md/UBERON/15/UBERON_2005415.md +++ b/md/UBERON/15/UBERON_2005415.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005415 * *Label* = inner ear foramen - * *Definition* = Foramen in the inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Foramen in the inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2007015.md b/md/UBERON/15/UBERON_2007015.md index 5bccacb37f..e0032201ef 100644 --- a/md/UBERON/15/UBERON_2007015.md +++ b/md/UBERON/15/UBERON_2007015.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2101415.md b/md/UBERON/15/UBERON_2101415.md index 2cf8bce2b6..615a744741 100644 --- a/md/UBERON/15/UBERON_2101415.md +++ b/md/UBERON/15/UBERON_2101415.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_2201415.md b/md/UBERON/15/UBERON_2201415.md index 670a106ca5..afde6c44bc 100644 --- a/md/UBERON/15/UBERON_2201415.md +++ b/md/UBERON/15/UBERON_2201415.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201415 * *Label* = pelvic fin distal radial cartilage 2 - * *Definition* = pelvic fin distal radial 2 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 2 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pelvic fin distal radial element 2](../../UBERON/15/UBERON_2101415.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000015.md b/md/UBERON/15/UBERON_3000015.md index 1b507297bd..7578e8b61b 100644 --- a/md/UBERON/15/UBERON_3000015.md +++ b/md/UBERON/15/UBERON_3000015.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000015 * *Label* = anterior maxillary process - * *Definition* = Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000115.md b/md/UBERON/15/UBERON_3000115.md index 70c6466cda..3d6c915e49 100644 --- a/md/UBERON/15/UBERON_3000115.md +++ b/md/UBERON/15/UBERON_3000115.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000515.md b/md/UBERON/15/UBERON_3000515.md index 58e925b38f..75f5651a15 100644 --- a/md/UBERON/15/UBERON_3000515.md +++ b/md/UBERON/15/UBERON_3000515.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000715.md b/md/UBERON/15/UBERON_3000715.md index 51018bebaf..2bd12f52f6 100644 --- a/md/UBERON/15/UBERON_3000715.md +++ b/md/UBERON/15/UBERON_3000715.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000715 * *Label* = heterocoelous - * *Definition* = Vertebral centrum that bears saddle-shaped articular surfaces at both ends, having a convexity in the right-left axis and a concavity in the dorsoventral axis. This morphology allows great lateral and vertical flexion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Vertebral centrum that bears saddle-shaped articular surfaces at both ends, having a convexity in the right-left axis and a concavity in the dorsoventral axis. This morphology allows great lateral and vertical flexion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000815.md b/md/UBERON/15/UBERON_3000815.md index b9a18d6ba8..3420ec8802 100644 --- a/md/UBERON/15/UBERON_3000815.md +++ b/md/UBERON/15/UBERON_3000815.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000815 * *Label* = sternal head of coracoid - * *Definition* = Medial end of the coracoid, which is synchondrotically fused to the epicoracoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Medial end of the coracoid, which is synchondrotically fused to the epicoracoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pars epicoracoidealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000815] + * pars epicoracoidealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000815 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3000915.md b/md/UBERON/15/UBERON_3000915.md index 036aa268bd..85e8a95907 100644 --- a/md/UBERON/15/UBERON_3000915.md +++ b/md/UBERON/15/UBERON_3000915.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000915 * *Label* = spatium intertarsale - * *Definition* = Separation of the tibiale and fibulare along their longitudinal axia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Separation of the tibiale and fibulare along their longitudinal axia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3010115.md b/md/UBERON/15/UBERON_3010115.md index 11a2632c55..1d5c47164a 100644 --- a/md/UBERON/15/UBERON_3010115.md +++ b/md/UBERON/15/UBERON_3010115.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010115 * *Label* = posterior lateral line nerve (PLLN) - * *Definition* = Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Sensory nerve of the posterior lateral line component. It develops from de postotic posterior placode. PLLN innervates the trunk lines of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3010315.md b/md/UBERON/15/UBERON_3010315.md index 2888bdf98b..f8a4480877 100644 --- a/md/UBERON/15/UBERON_3010315.md +++ b/md/UBERON/15/UBERON_3010315.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010315 * *Label* = obsolete neuron - * *Definition* = Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * nerve cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010315] + * nerve cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010315 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000540 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/15/UBERON_3010515.md b/md/UBERON/15/UBERON_3010515.md index 72ab07e8ba..f94011cc86 100644 --- a/md/UBERON/15/UBERON_3010515.md +++ b/md/UBERON/15/UBERON_3010515.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010515 * *Label* = lateral vein - * *Definition* = Either of the veins which collect blood from the trunk and skin and drain into the subclavian vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Either of the veins which collect blood from the trunk and skin and drain into the subclavian vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_3010815.md b/md/UBERON/15/UBERON_3010815.md index bbbf94417d..dfb32de506 100644 --- a/md/UBERON/15/UBERON_3010815.md +++ b/md/UBERON/15/UBERON_3010815.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010815 * *Label* = m. flexor indicis superficialis proprius - * *Definition* = Originates on the internal border of the distal carpal 5-4-3 and inserts on the distal end of phalynx I. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Originates on the internal border of the distal carpal 5-4-3 and inserts on the distal end of phalynx I. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_4000115.md b/md/UBERON/15/UBERON_4000115.md index 5854624897..e56380c587 100644 --- a/md/UBERON/15/UBERON_4000115.md +++ b/md/UBERON/15/UBERON_4000115.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000115 * *Label* = mineralized bone tissue - * *Definition* = Bone tissue mineralized with hydroxyapatite. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Bone tissue mineralized with hydroxyapatite. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_4100015.md b/md/UBERON/15/UBERON_4100015.md index 51e93ed815..2f9e36c4f0 100644 --- a/md/UBERON/15/UBERON_4100015.md +++ b/md/UBERON/15/UBERON_4100015.md @@ -26,8 +26,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/15/UBERON_4200015.md b/md/UBERON/15/UBERON_4200015.md index 4a3e72aedc..3600c7ceaf 100644 --- a/md/UBERON/15/UBERON_4200015.md +++ b/md/UBERON/15/UBERON_4200015.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_4200115.md b/md/UBERON/15/UBERON_4200115.md index dc19de2fbf..c522ab78e0 100644 --- a/md/UBERON/15/UBERON_4200115.md +++ b/md/UBERON/15/UBERON_4200115.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/15/UBERON_4300015.md b/md/UBERON/15/UBERON_4300015.md index a095006c75..8f0ba002bd 100644 --- a/md/UBERON/15/UBERON_4300015.md +++ b/md/UBERON/15/UBERON_4300015.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0000016.md b/md/UBERON/16/UBERON_0000016.md index 280139298d..29e02f930c 100644 --- a/md/UBERON/16/UBERON_0000016.md +++ b/md/UBERON/16/UBERON_0000016.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000016 * *Label* = endocrine pancreas - * *Definition* = The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:GO[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Islets_of_Langerhans] + * *Definition* = The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:GO, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Islets_of_Langerhans ] * *Comment* = Editor notes - endocrine and exocrine pancrease are not co-associated in hagfishes or lampreys [PMID:20959416] - create a separate class for these? ## Synonyms * endocrine pancreas * pars endocrina pancreatis - * endocrine part of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000650] + * endocrine part of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000650 ] * islets of Langerhans part of pancreas ## Cross-references @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0000116.md b/md/UBERON/16/UBERON_0000116.md index 4c78d8775a..ae0fd9e317 100644 --- a/md/UBERON/16/UBERON_0000116.md +++ b/md/UBERON/16/UBERON_0000116.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000116 * *Label* = lung saccule - * *Definition* = Primitive gas exchange portion of the lung composed of type I and type II cells[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060430] + * *Definition* = Primitive gas exchange portion of the lung composed of type I and type II cells[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060430 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0000316.md b/md/UBERON/16/UBERON_0000316.md index ced2d7742a..aa554fb3ae 100644 --- a/md/UBERON/16/UBERON_0000316.md +++ b/md/UBERON/16/UBERON_0000316.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000316 * *Label* = cervical mucus - * *Definition* = A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000242[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervix#Cervical_mucus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucus#Reproductive_system] + * *Definition* = A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000242, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervix#Cervical_mucus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucus#Reproductive_system ] ## Synonyms - * cervix mucus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cervix mucus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0000416.md b/md/UBERON/16/UBERON_0000416.md index 5d77cfccb7..54fc1283fa 100644 --- a/md/UBERON/16/UBERON_0000416.md +++ b/md/UBERON/16/UBERON_0000416.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000416 * *Label* = subdural space - * *Definition* = A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:8421539[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subdural_space] + * *Definition* = A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:8421539, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subdural_space ] * *Comment* = Consider obsoleting - see PMID:8421539 ## Synonyms - * cavum subdurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082] - * cavum subdurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subdural_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spatium subdurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082] - * spatium subdurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subdural_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subdural cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082] - * subdural cleavage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082] - * subdural cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002082] + * cavum subdurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082 ] + * cavum subdurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subdural_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spatium subdurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082 ] + * spatium subdurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subdural_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subdural cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082 ] + * subdural cleavage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082 ] + * subdural cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002082 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0000916.md b/md/UBERON/16/UBERON_0000916.md index 59afc1e2b2..858e9abbdf 100644 --- a/md/UBERON/16/UBERON_0000916.md +++ b/md/UBERON/16/UBERON_0000916.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000916 * *Label* = abdomen - * *Definition* = In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdomen] + * *Definition* = In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdomen ] * *Comment* = Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class ## Synonyms - * abdominopelvic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9577] - * abdominopelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9577] + * abdominopelvic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9577 ] + * abdominopelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9577 ] * adult abdomen * belly * celiac region @@ -51,8 +51,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = abdominal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001016.md b/md/UBERON/16/UBERON_0001016.md index dac4b978f6..b002f55e12 100644 --- a/md/UBERON/16/UBERON_0001016.md +++ b/md/UBERON/16/UBERON_0001016.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001016 * *Label* = nervous system - * *Definition* = The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-14-051288-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_844[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:nervous+system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WB:rynl[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-14-051288-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_844, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:nervous+system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WB:rynl, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * nerve net [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nerve_net] - * Nervensystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001484] - * systema nervosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve net [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nerve_net ] + * Nervensystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001484 ] + * systema nervosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,7 +34,7 @@ * OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA * SCTID:278196006 * TAO:0000396 - * UMLS:C0027763 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nervous_System] + * UMLS:C0027763 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nervous_System ] * VHOG:0000402 * WBbt:0005735 * Wikipedia:Nervous_system @@ -72,8 +72,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = nervous * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = neural * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001116.md b/md/UBERON/16/UBERON_0001116.md index 69ba51b4b6..ec39fc2fde 100644 --- a/md/UBERON/16/UBERON_0001116.md +++ b/md/UBERON/16/UBERON_0001116.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001116 * *Label* = quadrate lobe of liver - * *Definition* = The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadrate_lobe_of_liver] + * *Definition* = The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadrate_lobe_of_liver ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * liver quadrate lobe * lobus quadratus - * lobus quadratus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadrate_lobe_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus quadratus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadrate_lobe_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The portion of the right lobe of the liver between the gall bladder, the porta hepatis, the round ligament and the lower margin of the organ. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001216.md b/md/UBERON/16/UBERON_0001216.md index e9d3953c7e..ba55b5b6e6 100644 --- a/md/UBERON/16/UBERON_0001216.md +++ b/md/UBERON/16/UBERON_0001216.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001216 * *Label* = jejunal vein - * *Definition* = The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jejunal_veins] + * *Definition* = The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jejunal_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae jejunales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jejunal_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae jejunales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jejunal_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001316.md b/md/UBERON/16/UBERON_0001316.md index 5d05e6c098..a5324a700b 100644 --- a/md/UBERON/16/UBERON_0001316.md +++ b/md/UBERON/16/UBERON_0001316.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001316 * *Label* = external iliac vein - * *Definition* = The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_iliac_vein] + * *Definition* = The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_iliac_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena iliaca externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_iliac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena iliaca externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_iliac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002144 * OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA * SCTID:181400000 - * UMLS:C0226761 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Iliac_Vein] + * UMLS:C0226761 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Iliac_Vein ] * Wikipedia:External_iliac_vein * galen:ExternalIliacVein * http://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001416.md b/md/UBERON/16/UBERON_0001416.md index 2b8a97248b..8a4b66c2b5 100644 --- a/md/UBERON/16/UBERON_0001416.md +++ b/md/UBERON/16/UBERON_0001416.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001416 * *Label* = skin of abdomen - * *Definition* = A zone of skin that is part of an abdomen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of an abdomen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * abdomen skin - * abdomen zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * abdominal skin - * skin of abdomen proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22988] - * zone of skin of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * skin of abdomen proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22988 ] + * zone of skin of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:23000 * MA:0000523 * SCTID:361707007 - * UMLS:C0222166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abdominal_Skin] + * UMLS:C0222166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abdominal_Skin ] * ncithesaurus:Abdominal_Skin ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001516.md b/md/UBERON/16/UBERON_0001516.md index e51d481edb..415da0157d 100644 --- a/md/UBERON/16/UBERON_0001516.md +++ b/md/UBERON/16/UBERON_0001516.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001516 * *Label* = abdominal aorta - * *Definition* = Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002976[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_aorta] + * *Definition* = Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002976, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_aorta ] * *Comment* = Editors note: Many of the branches of the abdominal aorta in mammals may be branches of the dorsal aorta in other vertebrates ## Synonyms - * abdominal part of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3789] - * descending abdominal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3789] - * pars abdominalis aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3789] - * abdominal part of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002976] - * aorta abdominalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002976] - * aorta abdominalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars abdominalis aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002976] - * pars abdominalis aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abdominal part of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3789 ] + * descending abdominal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3789 ] + * pars abdominalis aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3789 ] + * abdominal part of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002976 ] + * aorta abdominalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002976 ] + * aorta abdominalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars abdominalis aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002976 ] + * pars abdominalis aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * MESH:A07.231.114.056.205 * OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA * SCTID:244231007 - * UMLS:C0003484 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abdominal_Aorta] + * UMLS:C0003484 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abdominal_Aorta ] * Wikipedia:Abdominal_aorta * galen:AbdominalAorta * http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png @@ -45,7 +45,7 @@ * [segment of aorta](../../UBERON/00/UBERON_0005800.md) * [part_of](../../BFO/50/BFO_0000050.md) some [descending aorta](../../UBERON/14/UBERON_0001514.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Equivalencies @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001616.md b/md/UBERON/16/UBERON_0001616.md index def3712b76..5a4d309633 100644 --- a/md/UBERON/16/UBERON_0001616.md +++ b/md/UBERON/16/UBERON_0001616.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001616 * *Label* = maxillary artery - * *Definition* = The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_artery] + * *Definition* = The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_artery ] * *Comment* = Development notes: ...1st pair undergoes partial regression, the remnants of which becomes part of the maxillary arteries [http://download.videohelp.com/vitualis/med/Vascular_Devt.html] ## Synonyms - * arteria maxillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria maxillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * internal maxillary artery ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.231.114.523 * OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA * SCTID:181326006 - * UMLS:C0024949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Maxillary_Artery] + * UMLS:C0024949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Maxillary_Artery ] * Wikipedia:Maxillary_artery * http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray510.png/200px-Gray510.png @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [directly_develops_from](../../RO/07/RO_0002207.md) some [aortic arch 1](../../UBERON/18/UBERON_0003118.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001716.md b/md/UBERON/16/UBERON_0001716.md index 8f07bad161..339186c081 100644 --- a/md/UBERON/16/UBERON_0001716.md +++ b/md/UBERON/16/UBERON_0001716.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001716 * *Label* = secondary palate - * *Definition* = The part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Secondary_palate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.indiana.edu/~anat550/hnanim/face/face.html] + * *Definition* = The part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Secondary_palate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.indiana.edu/~anat550/hnanim/face/face.html ] * *Comment* = Function notes: separates respiratory and oral passages. Taxon notes: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber. ## Synonyms - * definitive palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18948] + * definitive palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18948 ] * oral roof - * palatum definitivum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Secondary_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * palatum secundarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Secondary_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18948[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * palatum definitivum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Secondary_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * palatum secundarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Secondary_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18948, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * palatum - * palatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * roof of mouth ## Cross-references @@ -26,8 +26,8 @@ * MA:0002476 * MESH:A14.521.658 * SCTID:181227004 - * UMLS:C0700374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palate] - * UMLS:C1519217 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Secondary_Palate] + * UMLS:C0700374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palate ] + * UMLS:C1519217 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Secondary_Palate ] * Wikipedia:Secondary_palate * galen:Palate * http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg @@ -61,8 +61,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = palatal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001816.md b/md/UBERON/16/UBERON_0001816.md index b8153f9018..6e59296cf2 100644 --- a/md/UBERON/16/UBERON_0001816.md +++ b/md/UBERON/16/UBERON_0001816.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001816 * *Label* = autonomic nerve plexus - * *Definition* = A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve plexus that is part of an autonomic nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * autonomic plexus - * plexus autonomicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5910[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus nervosus visceralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5910[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus visceralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5910[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus autonomicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5910, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus nervosus visceralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5910, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus visceralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5910, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * visceral nerve plexus * visceral plexus @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve plexus](../../UBERON/10/UBERON_0001810.md) and [part_of](../../BFO/50/BFO_0000050.md) some [autonomic nervous system](../../UBERON/10/UBERON_0002410.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001816 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0001916.md b/md/UBERON/16/UBERON_0001916.md index 46b59e7643..23f06aff4d 100644 --- a/md/UBERON/16/UBERON_0001916.md +++ b/md/UBERON/16/UBERON_0001916.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001916 * *Label* = endothelium of arteriole - * *Definition* = An endothelium that is part of an arteriole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of an arteriole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:62115 * MA:0000705 - * UMLS:C1179024 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arteriole_Endothelium] + * UMLS:C1179024 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arteriole_Endothelium ] * ncithesaurus:Arteriole_Endothelium ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arteriole](../../UBERON/80/UBERON_0001980.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002016.md b/md/UBERON/16/UBERON_0002016.md index bb468383d1..d43eb4c88b 100644 --- a/md/UBERON/16/UBERON_0002016.md +++ b/md/UBERON/16/UBERON_0002016.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002016 * *Label* = pulmonary vein - * *Definition* = Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_vein] + * *Definition* = Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_vein ] ## Synonyms * pulmonary venous tree organ part - * venae pulmonales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae pulmonales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0002206 * MESH:A07.231.908.713 * SCTID:430160002 - * UMLS:C0034090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pulmonary_Vein] + * UMLS:C0034090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pulmonary_Vein ] * VHOG:0001133 * Wikipedia:Pulmonary_vein * XAO:0000394 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [lung](../../UBERON/48/UBERON_0002048.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_70827 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002116.md b/md/UBERON/16/UBERON_0002116.md index 839df3e52e..ae4e4b2565 100644 --- a/md/UBERON/16/UBERON_0002116.md +++ b/md/UBERON/16/UBERON_0002116.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002116 * *Label* = ileum - * *Definition* = The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileum] + * *Definition* = The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileum ] * *Comment* = TODO consider ZFA:0000706 posterior intestine, see also colon ## Synonyms - * distal intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000620] - * intestinum ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000620] - * lower intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000620] + * distal intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000620 ] + * intestinum ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000620 ] + * lower intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000620 ] ## Cross-references @@ -28,7 +28,7 @@ * MIAA:0000282 * OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA * SCTID:181249005 - * UMLS:C0020885 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ileum] + * UMLS:C0020885 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ileum ] * VHOG:0000647 * Wikipedia:Ileum * XAO:0000237 @@ -57,8 +57,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ileal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002216.md b/md/UBERON/16/UBERON_0002216.md index 84e002000f..51b99a2aab 100644 --- a/md/UBERON/16/UBERON_0002216.md +++ b/md/UBERON/16/UBERON_0002216.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002216 * *Label* = symphysis - * *Definition* = Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Symphysis] + * *Definition* = Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Symphysis ] * *Comment* = Editors note: consider adding fibrocartilage class ## Synonyms - * secondary cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7498] + * secondary cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7498 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002316.md b/md/UBERON/16/UBERON_0002316.md index b38570f113..987c64478a 100644 --- a/md/UBERON/16/UBERON_0002316.md +++ b/md/UBERON/16/UBERON_0002316.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002316 * *Label* = white matter - * *Definition* = Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Class_2[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:White_matter[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Neural tissue consisting of myelinated axons connecting grey matter areas of the central nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Class_2, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:White_matter, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * neuronal white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0001011] - * white matter of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83929] + * neuronal white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0001011 ] + * white matter of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83929 ] * white substance - * CNS tracts and commissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000145] - * CNS white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002143] - * substantia alba [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:White_matter[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * white mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001764] + * CNS tracts and commissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000145 ] + * CNS white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002143 ] + * substantia alba [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:White_matter, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * white mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001764 ] ## Cross-references @@ -28,7 +28,7 @@ * TAO:0000145 * TAO:0002142 * TAO:0002143 - * UMLS:C0682708 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:White_Matter] + * UMLS:C0682708 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:White_Matter ] * VHOG:0001764 * Wikipedia:White_matter * ZFA:0001682 @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure comprised largely of myelinated axons.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The myelination of axons by glial cells was the last major step in the evolution of cells in the vertebrate nervous system, and white-matter tracts are key to the architecture of the mammalian brain.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002416.md b/md/UBERON/16/UBERON_0002416.md index 3cc9a4493a..57cea423ab 100644 --- a/md/UBERON/16/UBERON_0002416.md +++ b/md/UBERON/16/UBERON_0002416.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002416 * *Label* = integumental system - * *Definition* = organ system that protects the body from damage, comprising the skin and its adnexa (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Integumentary_system] + * *Definition* = organ system that protects the body from damage, comprising the skin and its adnexa (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Integumentary_system ] * *Comment* = in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense, covering a variety of metazoans ## Synonyms - * integumentary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72979] - * dermal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000033] - * integumentum commune [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Integumentary_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * integumentary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72979 ] + * dermal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000033 ] + * integumentum commune [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Integumentary_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * MIAA:0000033 * SCTID:361692004 * TADS:0000108 - * UMLS:C0037267 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Integumentary_System] + * UMLS:C0037267 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Integumentary_System ] * VHOG:0000403 * Wikipedia:Integumentary_system * XAO:0000176 @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002516.md b/md/UBERON/16/UBERON_0002516.md index 6705fbde2f..1cf325293a 100644 --- a/md/UBERON/16/UBERON_0002516.md +++ b/md/UBERON/16/UBERON_0002516.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002516 * *Label* = epiphyseal plate - * *Definition* = a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiphyseal_plate] + * *Definition* = a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiphyseal_plate ] * *Comment* = editor note: consider splitting this class into the epiphyseal plates of long bones and vertebrae ## Synonyms * epiphyseal growth plate * epiphyseal growth plate cartilage - * epiphysial plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75427] - * long bone epiphyseal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002839] - * cartilago epiphysialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000412] + * epiphysial plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75427 ] + * long bone epiphyseal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002839 ] + * cartilago epiphysialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000412 ] * epiphyseal cartilage - * epiphyseal disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000412] - * epiphyseal growth disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000412] - * growth plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002839] - * lamina epiphysialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiphyseal_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * physis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000412] + * epiphyseal disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000412 ] + * epiphyseal growth disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000412 ] + * growth plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002839 ] + * lamina epiphysialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiphyseal_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * physis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000412 ] ## Cross-references @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002616.md b/md/UBERON/16/UBERON_0002616.md index db1dec91d5..97b1e4405c 100644 --- a/md/UBERON/16/UBERON_0002616.md +++ b/md/UBERON/16/UBERON_0002616.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002616 * *Label* = regional part of brain - * *Definition* = A multi-tissue structure that is part of a brain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a brain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anatomical structure of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biological structure of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brain anatomical structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brain biological structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical structure of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biological structure of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brain anatomical structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brain biological structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * brain part - * neuraxis segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55676] - * segment of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1167] + * neuraxis segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55676 ] + * segment of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1167 ] ## Cross-references * FMA:55676 * NIF_GrossAnatomy:birnlex_1167 * SCTID:384763002 - * UMLS:C0445620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain_Part] + * UMLS:C0445620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain_Part ] * ncithesaurus:Brain_Part ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002716.md b/md/UBERON/16/UBERON_0002716.md index 265b2757c6..76f53c3df9 100644 --- a/md/UBERON/16/UBERON_0002716.md +++ b/md/UBERON/16/UBERON_0002716.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002716 * *Label* = collateral sulcus - * *Definition* = The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collateral_fissure] + * *Definition* = The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collateral_fissure ] * *Comment* = AO notes: cnit has two distinct classes; FMA and NIF treat these as exact synonyms. ## Synonyms - * collateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83751] - * sulcus collateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1480] - * cos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1480[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fissura collateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collateral_fissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus collateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collateral_fissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * collateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83751 ] + * sulcus collateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1480 ] + * cos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1480, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fissura collateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collateral_fissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus collateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collateral_fissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:cos * FMA:83751 * NIF_GrossAnatomy:birnlex_1480 - * NeuroNames:47 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1480] + * NeuroNames:47 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1480 ] * SCTID:279356006 - * UMLS:C0228226 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1480] + * UMLS:C0228226 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1480 ] * Wikipedia:Collateral_fissure * http://upload.wikimedia.org/wikipedia/commons/9/93/Gray738.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray738.png/200px-Gray738.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002816.md b/md/UBERON/16/UBERON_0002816.md index 9840cc7ad1..3076e4820e 100644 --- a/md/UBERON/16/UBERON_0002816.md +++ b/md/UBERON/16/UBERON_0002816.md @@ -6,11 +6,11 @@ ## Synonyms - * fissura prebiventralis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75138[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prebiventral fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75138] - * prepyramidal fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75138] - * prepyramidal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75138] - * prepyramidal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081257] + * fissura prebiventralis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75138, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prebiventral fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75138 ] + * prepyramidal fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75138 ] + * prepyramidal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75138 ] + * prepyramidal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081257 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002816 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0002916.md b/md/UBERON/16/UBERON_0002916.md index 3779752150..2e5b5970e2 100644 --- a/md/UBERON/16/UBERON_0002916.md +++ b/md/UBERON/16/UBERON_0002916.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002916 * *Label* = central sulcus - * *Definition* = The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_sulcus] + * *Definition* = The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_sulcus ] ## Synonyms - * central cerebral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83752] - * central fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83752] + * central cerebral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83752 ] + * central fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83752 ] * central sulcus of rolando * fissure of rolando - * rolandic fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4035] - * sulcus centralis (rolandi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4035] - * sulcus centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4035] - * sulcus centralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4035] + * rolandic fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4035 ] + * sulcus centralis (rolandi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4035 ] + * sulcus centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4035 ] + * sulcus centralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4035 ] * sulcus of rolando - * cs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4035[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus centralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4035, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus centralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,12 +25,12 @@ * BM:Tel-Cx-CS * FMA:83752 * NIF_GrossAnatomy:birnlex_4035 - * NeuroNames:48 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4035] + * NeuroNames:48 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4035 ] * OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA * SCTID:279340001 - * UMLS:C0228188 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4035] - * UMLS:C0228188 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Central_Sulcus_of_Rolando] - * UMLS:C1281071 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4035] + * UMLS:C0228188 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4035 ] + * UMLS:C0228188 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Central_Sulcus_of_Rolando ] + * UMLS:C1281071 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4035 ] * Wikipedia:Central_sulcus * http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Central_sulcus.png/200px-Central_sulcus.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003016.md b/md/UBERON/16/UBERON_0003016.md index f4f40cd724..30e6dba6b0 100644 --- a/md/UBERON/16/UBERON_0003016.md +++ b/md/UBERON/16/UBERON_0003016.md @@ -6,10 +6,10 @@ ## Synonyms - * pofx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_914[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * columna posterior fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:431[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fornix postcommissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:431[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * postcommissural fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:431] + * pofx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_914, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * columna posterior fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:431, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fornix postcommissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:431, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * postcommissural fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:431 ] ## Cross-references @@ -17,8 +17,8 @@ * BAMS:pofx * FMA:62062 * NIF_GrossAnatomy:birnlex_914 - * NeuroNames:431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_914] - * UMLS:C0175340 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_914] + * NeuroNames:431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_914 ] + * UMLS:C0175340 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_914 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003116.md b/md/UBERON/16/UBERON_0003116.md index 4bfa6ea786..64b4b17115 100644 --- a/md/UBERON/16/UBERON_0003116.md +++ b/md/UBERON/16/UBERON_0003116.md @@ -7,15 +7,15 @@ ## Synonyms - * fifth visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000451] - * gill arch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001608] - * visceral arch 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001608] - * 5th pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001204] - * 5th visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001204] - * branchial arch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010367[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000451[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * branchial arch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001608] - * fifth pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001204] - * third branchial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000451[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fifth visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000451 ] + * gill arch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001608 ] + * visceral arch 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001608 ] + * 5th pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001204 ] + * 5th visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001204 ] + * branchial arch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010367, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000451, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * branchial arch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001608 ] + * fifth pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001204 ] + * third branchial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000451, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 5 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003216.md b/md/UBERON/16/UBERON_0003216.md index 60cb42fc12..ca60aeb27b 100644 --- a/md/UBERON/16/UBERON_0003216.md +++ b/md/UBERON/16/UBERON_0003216.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003216 * *Label* = hard palate - * *Definition* = anterior portion of the palate consisting of bone and mucous membranes[GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hard_palate] + * *Definition* = anterior portion of the palate consisting of bone and mucous membranes[GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hard_palate ] * *Comment* = In FMA this is divided into bony parts and submucosa ## Synonyms * hard palate - * palatum durum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hard_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palatum durum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hard_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A02.835.232.781.324.502.660 * MIAA:0000161 * SCTID:245778002 - * UMLS:C0226901 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hard_Palate] + * UMLS:C0226901 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hard_Palate ] * Wikipedia:Hard_palate * http://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg * ncithesaurus:Hard_Palate @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003316.md b/md/UBERON/16/UBERON_0003316.md index 5ac2d11510..598d2a8abe 100644 --- a/md/UBERON/16/UBERON_0003316.md +++ b/md/UBERON/16/UBERON_0003316.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003316 * *Label* = mesenchyme of yolk sac - * *Definition* = Mesenchyme that is part of a yolk sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a yolk sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * yolk sac mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * yolk sac mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003416.md b/md/UBERON/16/UBERON_0003416.md index 19dfae8891..fdb10d88f1 100644 --- a/md/UBERON/16/UBERON_0003416.md +++ b/md/UBERON/16/UBERON_0003416.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003416 * *Label* = mesenchyme of tongue - * *Definition* = Mesenchyme that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - develops_from ## Synonyms - * tongue mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004614] + * tongue mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004614 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003516.md b/md/UBERON/16/UBERON_0003516.md index d29e13f73d..e49f9cf4b1 100644 --- a/md/UBERON/16/UBERON_0003516.md +++ b/md/UBERON/16/UBERON_0003516.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003516 * *Label* = hindlimb blood vessel - * *Definition* = A blood vessel that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003616.md b/md/UBERON/16/UBERON_0003616.md index 6824668624..6e9473d728 100644 --- a/md/UBERON/16/UBERON_0003616.md +++ b/md/UBERON/16/UBERON_0003616.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003616 * *Label* = bronchus elastic tissue - * *Definition* = An elastic tissue that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An elastic tissue that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchi elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001838 - * UMLS:C1707053 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Elastic_Tissue] + * UMLS:C1707053 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Elastic_Tissue ] * ncithesaurus:Bronchus_Elastic_Tissue ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003716.md b/md/UBERON/16/UBERON_0003716.md index 246452107d..b6995ba1ab 100644 --- a/md/UBERON/16/UBERON_0003716.md +++ b/md/UBERON/16/UBERON_0003716.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003716 * *Label* = recurrent laryngeal nerve - * *Definition* = A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recurrent_laryngeal_nerve] + * *Definition* = A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recurrent_laryngeal_nerve ] ## Synonyms - * nervus laryngeus recurrens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recurrent_laryngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus laryngeus recurrens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recurrent_laryngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * recurrent laryngeal nerve from vagus nerve - * vagus X nerve recurrent laryngeal branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001347] - * recurrent nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recurrent_laryngeal_nerve] - * inferior laryngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:804] - * ramus recurrens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010754] + * vagus X nerve recurrent laryngeal branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001347 ] + * recurrent nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recurrent_laryngeal_nerve ] + * inferior laryngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:804 ] + * ramus recurrens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010754 ] ## Cross-references @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0003916.md b/md/UBERON/16/UBERON_0003916.md index e3f016d4c2..3c9b60dd01 100644 --- a/md/UBERON/16/UBERON_0003916.md +++ b/md/UBERON/16/UBERON_0003916.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003916 * *Label* = fat pad - * *Definition* = a mass of closely packed fat cells (adipose tissue) surrounded by fibrous tissue septa[TMD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000444[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060613[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/fat+pad] + * *Definition* = a mass of closely packed fat cells (adipose tissue) surrounded by fibrous tissue septa[TMD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000444, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060613, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/fat+pad ] * *Comment* = AO notes: FMA says isa fascia organ. Note that XAO and AAO have structures called fat pad/body, but these are gonad-associated, so we place them with the gonad-specific subclass ## Synonyms - * fat body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58616] + * fat body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58616 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An accumulation of adipose tissue (fat cells) enclosed in fibrous tissue[BTO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004016.md b/md/UBERON/16/UBERON_0004016.md index 6d27b3a753..bb4a81a2cf 100644 --- a/md/UBERON/16/UBERON_0004016.md +++ b/md/UBERON/16/UBERON_0004016.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004016 * *Label* = dermatome - * *Definition* = the mesoderm that is derived from the somite that is fated to become the dermis[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003940[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermatomal_mesenchyme] + * *Definition* = the mesoderm that is derived from the somite that is fated to become the dermis[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003940, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermatomal_mesenchyme ] * *Comment* = Not to be confused with 'dermatome segment of skin'. ## Synonyms - * cutis plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cutis_plate] - * dermatomal mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cutis_plate] - * mesenchyma dermatomiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermatomal_mesenchyme[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cutis plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cutis_plate ] + * dermatomal mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cutis_plate ] + * mesenchyma dermatomiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermatomal_mesenchyme, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * EHDAA:1731 * EHDAA:1737 * EMAPA:32838 - * UMLS:C0180383 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dermatome] + * UMLS:C0180383 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dermatome ] * Wikipedia:Dermatomal_mesenchyme * XAO:0000220 * http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004116.md b/md/UBERON/16/UBERON_0004116.md index 0eaf45d908..ff4b28e463 100644 --- a/md/UBERON/16/UBERON_0004116.md +++ b/md/UBERON/16/UBERON_0004116.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004116 * *Label* = nerve of tympanic cavity - * *Definition* = A nerve that is part of a tympanic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a tympanic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anatomical cavity of middle ear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of middle ear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear anatomical cavity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear cavity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of anatomical cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of cavity of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle ear anatomical cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle ear cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical cavity of middle ear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of middle ear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear anatomical cavity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear cavity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of anatomical cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of cavity of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle ear anatomical cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle ear cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tympanic cavity nerve - * tympanic cavity nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001222] + * tympanic cavity nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001222 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [tympanic cavity](../../UBERON/14/UBERON_0004114.md) and [nerve](../../UBERON/21/UBERON_0001021.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004216.md b/md/UBERON/16/UBERON_0004216.md index 403af0651b..3ad8e6b27d 100644 --- a/md/UBERON/16/UBERON_0004216.md +++ b/md/UBERON/16/UBERON_0004216.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004216 * *Label* = lower arm nerve - * *Definition* = A nerve that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antebrachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -53,15 +53,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004316.md b/md/UBERON/16/UBERON_0004316.md index c22c087aee..f8e7af7da8 100644 --- a/md/UBERON/16/UBERON_0004316.md +++ b/md/UBERON/16/UBERON_0004316.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004316 * *Label* = distal phalanx of pedal digit 2 - * *Definition* = A distal phalanx that is part of a foot digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a foot digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd toe distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32628] - * distal phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32628] - * distal phalanx of the 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second distal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32628] + * 2nd toe distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32628 ] + * distal phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32628 ] + * distal phalanx of the 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second distal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32628 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004416.md b/md/UBERON/16/UBERON_0004416.md index aa30aa730f..e313561ac4 100644 --- a/md/UBERON/16/UBERON_0004416.md +++ b/md/UBERON/16/UBERON_0004416.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004416 * *Label* = proximal epiphysis of metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33795] - * basis ossis metacarpi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33795[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33795] - * proximal end of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33795] - * upper end of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33795] + * base of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33795 ] + * basis ossis metacarpi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33795, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33795 ] + * proximal end of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33795 ] + * upper end of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33795 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004516.md b/md/UBERON/16/UBERON_0004516.md index c42c72c1fc..2005a8411e 100644 --- a/md/UBERON/16/UBERON_0004516.md +++ b/md/UBERON/16/UBERON_0004516.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004516 * *Label* = smooth muscle tissue of terminal bronchiole - * *Definition* = A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a terminal bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [terminal bronchiole](../../UBERON/87/UBERON_0002187.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004616.md b/md/UBERON/16/UBERON_0004616.md index 6344c5e4aa..52232b1e3c 100644 --- a/md/UBERON/16/UBERON_0004616.md +++ b/md/UBERON/16/UBERON_0004616.md @@ -7,11 +7,11 @@ ## Synonyms - * C7 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12525] - * cervical vertebra 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001427] - * prominent vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12525] - * seventh cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12525] - * vertebra prominens (CVII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12525] + * C7 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12525 ] + * cervical vertebra 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001427 ] + * prominent vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12525 ] + * seventh cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12525 ] + * vertebra prominens (CVII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12525 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:12525 * MA:0001427 * SCTID:181827008 - * UMLS:C0223176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C7_Vertebra] + * UMLS:C0223176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C7_Vertebra ] * ncithesaurus:C7_Vertebra ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004716.md b/md/UBERON/16/UBERON_0004716.md index e7ffce1e58..5f298ac14c 100644 --- a/md/UBERON/16/UBERON_0004716.md +++ b/md/UBERON/16/UBERON_0004716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004716 * *Label* = conceptus - * *Definition* = The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003834[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conceptus] + * *Definition* = The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003834, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conceptus ] * *Comment* = Editor notes: EHDAA2 places this as a subtype of organism. This leads to the inference that a conceptus is an embryo (if an embryo is defined as an organism at embryo stage), which eliminates the embryonic + extra-embryonic = conceptus ## Synonyms @@ -16,7 +16,7 @@ * BTO:0003834 * EHDAA2:0000001 * EHDAA2:0003235 - * UMLS:C1516779 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Conceptus] + * UMLS:C1516779 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Conceptus ] * Wikipedia:Conceptus * ncithesaurus:Conceptus @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004816.md b/md/UBERON/16/UBERON_0004816.md index 7de79a52b0..d55a21ee33 100644 --- a/md/UBERON/16/UBERON_0004816.md +++ b/md/UBERON/16/UBERON_0004816.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004816 * *Label* = larynx epithelium - * *Definition* = An epithelium that is part of a larynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a larynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * larynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * larynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EHDAA2:0004065 * MA:0001765 - * UMLS:C0751258 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Epithelium] + * UMLS:C0751258 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Epithelium ] * ncithesaurus:Laryngeal_Epithelium ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004816 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0004916.md b/md/UBERON/16/UBERON_0004916.md index 61feb25cb1..b74ec0f617 100644 --- a/md/UBERON/16/UBERON_0004916.md +++ b/md/UBERON/16/UBERON_0004916.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005016.md b/md/UBERON/16/UBERON_0005016.md index e5cfcbb8a2..6b2e87dafa 100644 --- a/md/UBERON/16/UBERON_0005016.md +++ b/md/UBERON/16/UBERON_0005016.md @@ -3,50 +3,50 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005016 * *Label* = mucosa of intermediate urethra - * *Definition* = A mucosa that is part of a membranous urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a membranous urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * intermediate part of urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate part of urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate part of urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate part of urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate urethral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77085] - * membranous part of urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous part of urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous part of urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous part of urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous urethra mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous urethra mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous urethra mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous urethra organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of intermediate part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of membranous part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of intermediate part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of intermediate urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of membranous part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pars membranacea (urethrae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of pars membranacea (urethrae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of intermediate part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of intermediate urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of membranous part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pars membranacea (urethrae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of intermediate part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of intermediate urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of membranous part of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pars membranacea (urethrae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars membranacea (urethrae) mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars membranacea (urethrae) mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars membranacea (urethrae) mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars membranacea (urethrae) organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intermediate part of urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate part of urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate part of urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate part of urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate urethral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77085 ] + * membranous part of urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous part of urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous part of urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous part of urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous urethra mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous urethra mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous urethra mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous urethra organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of intermediate part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of membranous part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of intermediate part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of intermediate urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of membranous part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pars membranacea (urethrae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of pars membranacea (urethrae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of intermediate part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of intermediate urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of membranous part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pars membranacea (urethrae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of intermediate part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of intermediate urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of membranous part of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pars membranacea (urethrae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars membranacea (urethrae) mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars membranacea (urethrae) mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars membranacea (urethrae) mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars membranacea (urethrae) organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -64,15 +64,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [membranous urethra of male or female](../../UBERON/36/UBERON_0001336.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005116.md b/md/UBERON/16/UBERON_0005116.md index cfaa43ac14..35e763a902 100644 --- a/md/UBERON/16/UBERON_0005116.md +++ b/md/UBERON/16/UBERON_0005116.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005116 * *Label* = metanephric descending thin limb - * *Definition* = It extends to the tip of the metanephric loop of Henle[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072220] + * *Definition* = It extends to the tip of the metanephric loop of Henle[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072220 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [descending thin limb](../../UBERON/96/UBERON_0005096.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005216.md b/md/UBERON/16/UBERON_0005216.md index 0869bb81aa..bd94b9192a 100644 --- a/md/UBERON/16/UBERON_0005216.md +++ b/md/UBERON/16/UBERON_0005216.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005216 * *Label* = optic eminence surface ectoderm - * *Definition* = An external ectoderm that is part of a optic eminence [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An external ectoderm that is part of a optic eminence [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external ectoderm](../../UBERON/76/UBERON_0000076.md) and [part_of](../../BFO/50/BFO_0000050.md) some [optic eminence](../../UBERON/48/UBERON_0004348.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005316.md b/md/UBERON/16/UBERON_0005316.md index 159a407ed9..bd2fd23651 100644 --- a/md/UBERON/16/UBERON_0005316.md +++ b/md/UBERON/16/UBERON_0005316.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005316 * *Label* = endocardial endothelium - * *Definition* = The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061147] + * *Definition* = The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061147 ] ## Synonyms - * endocardium endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83596] - * endothelium of endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83596] + * endocardium endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83596 ] + * endothelium of endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83596 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endocardium](../../UBERON/65/UBERON_0002165.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005416.md b/md/UBERON/16/UBERON_0005416.md index 180d9c00ca..c503251199 100644 --- a/md/UBERON/16/UBERON_0005416.md +++ b/md/UBERON/16/UBERON_0005416.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005416 * *Label* = zone of polarizing activity of pelvic appendage - * *Definition* = A zone of polarizing activity that is part of a pelvic appendage bud mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of polarizing activity that is part of a pelvic appendage bud mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * hind ZPA * pelvic ZPA * posterior ZPA - * zone of polarizing activity pelvic fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001452] + * zone of polarizing activity pelvic fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001452 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage bud mesenchyme](../../UBERON/12/UBERON_0003412.md) and [zone of polarizing activity](../../UBERON/14/UBERON_0005414.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small group of mesodermal cells located at the posterior margin of the developing fin bud. The ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. Gibert et al., 2006.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005616.md b/md/UBERON/16/UBERON_0005616.md index c3b9f269f0..2286f499bc 100644 --- a/md/UBERON/16/UBERON_0005616.md +++ b/md/UBERON/16/UBERON_0005616.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005616 * *Label* = mesenteric artery - * *Definition* = Arteries which arise from the abdominal aorta and distribute to most of the intestines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.231.114.565[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesenteric_artery] + * *Definition* = Arteries which arise from the abdominal aorta and distribute to most of the intestines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.231.114.565, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesenteric_artery ] * *Comment* = Editors note: includes posterior and anterior mesenteric arteries, which branch from the dorsal aorta (see Kardong), and superior and inferior mesenteric arteries ## Synonyms @@ -18,7 +18,7 @@ * MA:0002003 * MESH:A07.231.114.565 * SCTID:281084003 - * UMLS:C0025465 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesenteric_Artery] + * UMLS:C0025465 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesenteric_Artery ] * VHOG:0001117 * Wikipedia:Mesenteric_artery * XAO:0000370 @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0005816.md b/md/UBERON/16/UBERON_0005816.md index e3885c1649..fe430a0600 100644 --- a/md/UBERON/16/UBERON_0005816.md +++ b/md/UBERON/16/UBERON_0005816.md @@ -6,9 +6,9 @@ ## Synonyms - * posterior costal tubercle of transverse process of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24128] - * posterior tubercle of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24128] - * tuberculum cervicales posterius vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24128[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior costal tubercle of transverse process of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24128 ] + * posterior tubercle of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24128 ] + * tuberculum cervicales posterius vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24128, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005816 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006016.md b/md/UBERON/16/UBERON_0006016.md index b88d40b861..4ba02a0e03 100644 --- a/md/UBERON/16/UBERON_0006016.md +++ b/md/UBERON/16/UBERON_0006016.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006016 * *Label* = interdigital region between digits 1 and 2 - * *Definition* = An interdigital region that adjacent_to a digit 1 and adjacent_to a digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a digit 1 and adjacent_to a digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [digit 1](../../UBERON/48/UBERON_0006048.md) and [adjacent to](../../RO/20/RO_0002220.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006116.md b/md/UBERON/16/UBERON_0006116.md index 9a174ad428..bce9df9e77 100644 --- a/md/UBERON/16/UBERON_0006116.md +++ b/md/UBERON/16/UBERON_0006116.md @@ -6,23 +6,23 @@ ## Synonyms - * central part of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72628] - * central part of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_765] - * tenth cranial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72628] - * tenth cranial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_765] - * vagal nerve fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_765] - * vagal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72628] - * vagal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_765] - * vagal nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72628] - * fibrae nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:794[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central part of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72628 ] + * central part of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_765 ] + * tenth cranial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72628 ] + * tenth cranial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_765 ] + * vagal nerve fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_765 ] + * vagal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72628 ] + * vagal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_765 ] + * vagal nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72628 ] + * fibrae nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:794, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:10nf * FMA:72628 * NIF_GrossAnatomy:birnlex_765 - * NeuroNames:794 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_765] - * UMLS:C0175551 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_765] + * NeuroNames:794 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_765 ] + * UMLS:C0175551 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_765 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006216.md b/md/UBERON/16/UBERON_0006216.md index 0331ef6822..0989fc8277 100644 --- a/md/UBERON/16/UBERON_0006216.md +++ b/md/UBERON/16/UBERON_0006216.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006216 * *Label* = cervical sinus - * *Definition* = a temporary depression caudal to the second pharyngeal arch, containing the succeeding pharyngeal arches; it is overgrown by the second pharyngeal arch and closes off as the cervical vesicle[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_sinus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/cervical+sinus] + * *Definition* = a temporary depression caudal to the second pharyngeal arch, containing the succeeding pharyngeal arches; it is overgrown by the second pharyngeal arch and closes off as the cervical vesicle[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_sinus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/cervical+sinus ] * *Comment* = This sinus is bounded in front by the hyoid arch, and behind by the thoracic wall; it is ultimately obliterated by the fusion of its walls. ## Synonyms - * sinus cervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_sinus] - * sinus cervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus cervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_sinus ] + * sinus cervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006516.md b/md/UBERON/16/UBERON_0006516.md index 2f585cbce0..c289df7fa7 100644 --- a/md/UBERON/16/UBERON_0006516.md +++ b/md/UBERON/16/UBERON_0006516.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006516 * *Label* = dorsal pallidum - * *Definition* = The term dorsal pallidum refers to the predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 ) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1604] + * *Definition* = The term dorsal pallidum refers to the predominant portion of the globus pallidus in the striatopallidal system, which is defined by connectivity and neurochemical staining. The dorsal pallidum is distinguished from the ventral pallidum by a boundary that is partially defined by the anterior commissure. The remainder of the boundary is indistinct in sections stained for Nissl substance ( Heimer-1995 ) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1604 ] ## Synonyms - * Pallidum dorsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PALd] - * dorsal globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004376] - * dorsal peduncular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DP] - * dorsal peduncular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DP] - * dorsal prelunate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DP] + * Pallidum dorsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PALd ] + * dorsal globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004376 ] + * dorsal peduncular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DP ] + * dorsal peduncular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DP ] + * dorsal prelunate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DP ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006616.md b/md/UBERON/16/UBERON_0006616.md index 14a83a9ead..4c9843a035 100644 --- a/md/UBERON/16/UBERON_0006616.md +++ b/md/UBERON/16/UBERON_0006616.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006616 * *Label* = right external ear - * *Definition* = An external ear that is in the right side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An external ear that is in the right side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53643] + * right auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53643 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external ear](../../UBERON/91/UBERON_0001691.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006716.md b/md/UBERON/16/UBERON_0006716.md index 48b6a977ad..77b3a5316d 100644 --- a/md/UBERON/16/UBERON_0006716.md +++ b/md/UBERON/16/UBERON_0006716.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006716 * *Label* = mesopodium region - * *Definition* = The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpus_and_tarsus_of_land_vertebrates[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpus_and_tarsus_of_land_vertebrates, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group ## Synonyms * carpus/tarsus - * mesopodial limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * mesopodial limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] * mesopodial segment * mesopod @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [metapodium region](../../UBERON/77/UBERON_0009877.md) and [limb segment](../../UBERON/29/UBERON_0002529.md) and [proximally connected to](../../core#proximally/to/core#proximally_connected_to.md) some [zeugopod](../../UBERON/71/UBERON_0002471.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0006916.md b/md/UBERON/16/UBERON_0006916.md index 1c947b2b22..f17a7d163a 100644 --- a/md/UBERON/16/UBERON_0006916.md +++ b/md/UBERON/16/UBERON_0006916.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [non-keratinized stratified squamous epithelium](../../UBERON/04/UBERON_0010304.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0007116.md b/md/UBERON/16/UBERON_0007116.md index aadbea6836..25c897fe72 100644 --- a/md/UBERON/16/UBERON_0007116.md +++ b/md/UBERON/16/UBERON_0007116.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007116 * *Label* = primary dentition - * *Definition* = The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.245] + * *Definition* = The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.245 ] ## Synonyms - * baby teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] - * deciduous teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] - * dentes decidui [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * milk teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] - * primary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] - * primary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1266] - * set of deciduous teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] - * set of primary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75151] + * baby teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] + * deciduous teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] + * dentes decidui [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * milk teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] + * primary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] + * primary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1266 ] + * set of deciduous teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] + * set of primary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75151 ] * tooth of primary dentition - * deciduous dentition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1252] + * deciduous dentition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1252 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0007316.md b/md/UBERON/16/UBERON_0007316.md index c3084ac9a4..e2f81762df 100644 --- a/md/UBERON/16/UBERON_0007316.md +++ b/md/UBERON/16/UBERON_0007316.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007316 * *Label* = deep external pudendal artery - * *Definition* = The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_external_pudendal_artery] + * *Definition* = The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_external_pudendal_artery ] ## Synonyms - * arteria pudenda externa profunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_external_pudendal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria pudenda externa profunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_external_pudendal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0007416.md b/md/UBERON/16/UBERON_0007416.md index b76645d8f4..7c771d0aae 100644 --- a/md/UBERON/16/UBERON_0007416.md +++ b/md/UBERON/16/UBERON_0007416.md @@ -14,7 +14,7 @@ * MA:0002742 * NeuroNames:1207 * SCTID:362417003 - * UMLS:C0228515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellar_Peduncle] + * UMLS:C0228515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellar_Peduncle ] * ncithesaurus:Cerebellar_Peduncle ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0007616.md b/md/UBERON/16/UBERON_0007616.md index 204eb8163c..5d61a2dfb9 100644 --- a/md/UBERON/16/UBERON_0007616.md +++ b/md/UBERON/16/UBERON_0007616.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007616 * *Label* = layer of synovial tissue - * *Definition* = A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001338[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.britannica.com/EBchecked/topic/578563/synovial-tissue] + * *Definition* = A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001338, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.britannica.com/EBchecked/topic/578563/synovial-tissue ] ## Synonyms - * synovium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0998] - * stratum synoviale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * synovial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66762] - * synovial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66762] - * synovial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001338] + * synovium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0998 ] + * stratum synoviale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * synovial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66762 ] + * synovial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66762 ] + * synovial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001338 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [produces](../../RO/00/RO_0003000.md) some [synovial fluid](../../UBERON/90/UBERON_0001090.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0007716.md b/md/UBERON/16/UBERON_0007716.md index 225be8a23a..f6d453d984 100644 --- a/md/UBERON/16/UBERON_0007716.md +++ b/md/UBERON/16/UBERON_0007716.md @@ -6,7 +6,7 @@ ## Synonyms - * segment part of lumbar spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1652] + * segment part of lumbar spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1652 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0008716.md b/md/UBERON/16/UBERON_0008716.md index 8d013a9c7c..fbe679a28e 100644 --- a/md/UBERON/16/UBERON_0008716.md +++ b/md/UBERON/16/UBERON_0008716.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008716 * *Label* = hilum of kidney - * *Definition* = A hilum that is part of a kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hilum that is part of a kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * renal hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15610] + * renal hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15610 ] ## Cross-references * FMA:15610 * SCTID:279370006 - * UMLS:C0227608 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hilar_Area_of_the_Kidney] + * UMLS:C0227608 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hilar_Area_of_the_Kidney ] * galen:HilumOfKidney * ncithesaurus:Hilar_Area_of_the_Kidney @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hilum](../../UBERON/85/UBERON_0004885.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0008816.md b/md/UBERON/16/UBERON_0008816.md index 687dfbd8d9..08cf60008b 100644 --- a/md/UBERON/16/UBERON_0008816.md +++ b/md/UBERON/16/UBERON_0008816.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008816 * *Label* = embryonic head - * *Definition* = A head that is part of a embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A head that is part of a embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [head](../../UBERON/33/UBERON_0000033.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008816 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009016.md b/md/UBERON/16/UBERON_0009016.md index e911f4d020..6eec915821 100644 --- a/md/UBERON/16/UBERON_0009016.md +++ b/md/UBERON/16/UBERON_0009016.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009116.md b/md/UBERON/16/UBERON_0009116.md index 0102f9bc90..466f10bdd0 100644 --- a/md/UBERON/16/UBERON_0009116.md +++ b/md/UBERON/16/UBERON_0009116.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009116 * *Label* = thymoid - * *Definition* = A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21293377] + * *Definition* = A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21293377 ] * *Comment* = Genes: FOXN1 ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009216.md b/md/UBERON/16/UBERON_0009216.md index 80679d1fdc..77097b685a 100644 --- a/md/UBERON/16/UBERON_0009216.md +++ b/md/UBERON/16/UBERON_0009216.md @@ -6,7 +6,7 @@ ## Synonyms - * 3rd pharyngeal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000876] + * 3rd pharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000876 ] ## Cross-references @@ -20,8 +20,8 @@ * [pharyngeal membrane](../../UBERON/10/UBERON_0009210.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [3rd arch pharyngeal cleft](../../UBERON/74/UBERON_0005874.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal pouch 3](../../UBERON/24/UBERON_0007124.md) ## Equivalencies @@ -33,8 +33,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the endodermal epithelium lining each pouch contacts the surface ectoderm of the clefts to form a series of bilayered branchial membranes, that break down in fish to form the gill openings.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009616.md b/md/UBERON/16/UBERON_0009616.md index 76c86b199a..7469efefb1 100644 --- a/md/UBERON/16/UBERON_0009616.md +++ b/md/UBERON/16/UBERON_0009616.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009616 * *Label* = presumptive midbrain - * *Definition* = A presumptive structure that has_potential_to_develop_into a midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - unify naming conventions ## Synonyms - * presumptive mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000148] - * early midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * future midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000615] + * presumptive mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000148 ] + * early midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * future midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000615 ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009716.md b/md/UBERON/16/UBERON_0009716.md index 749080eb6c..bb5d55564d 100644 --- a/md/UBERON/16/UBERON_0009716.md +++ b/md/UBERON/16/UBERON_0009716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009716 * *Label* = cupular organ - * *Definition* = Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.2108/zsj.27.842] + * *Definition* = Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.2108/zsj.27.842 ] * *Comment* = Homology: possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli. ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0009916.md b/md/UBERON/16/UBERON_0009916.md index 576abc3dd0..733cfc9761 100644 --- a/md/UBERON/16/UBERON_0009916.md +++ b/md/UBERON/16/UBERON_0009916.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009916 * *Label* = wall of ureter - * *Definition* = An anatomical wall that is part of a ureter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a ureter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ureteral wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15888] + * ureteral wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15888 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0010016.md b/md/UBERON/16/UBERON_0010016.md index 396943d1d7..11534ba14a 100644 --- a/md/UBERON/16/UBERON_0010016.md +++ b/md/UBERON/16/UBERON_0010016.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010016 * *Label* = spiral valve of intestine - * *Definition* = Coiled structure in the lumen of the small intestine that increases the length of the route through the diesgtive tract.[WP,cjm,Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_valve] + * *Definition* = Coiled structure in the lumen of the small intestine that increases the length of the route through the diesgtive tract.[WP,cjm,Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_valve ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0010316.md b/md/UBERON/16/UBERON_0010316.md index a772cd03ca..083adabadb 100644 --- a/md/UBERON/16/UBERON_0010316.md +++ b/md/UBERON/16/UBERON_0010316.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0010416.md b/md/UBERON/16/UBERON_0010416.md index 135d2bf01f..792cc93dac 100644 --- a/md/UBERON/16/UBERON_0010416.md +++ b/md/UBERON/16/UBERON_0010416.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010416 * *Label* = lymph node B cell domain - * *Definition* = A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * lymph node B cell dependent cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002344] - * lymph node B-cell domain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002344] - * nodular lymph node cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002344] + * lymph node B cell dependent cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002344 ] + * lymph node B-cell domain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002344 ] + * nodular lymph node cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002344 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [B cell domain](../../UBERON/92/UBERON_0010392.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0010516.md b/md/UBERON/16/UBERON_0010516.md index bfdc4e78b8..3eca0a7843 100644 --- a/md/UBERON/16/UBERON_0010516.md +++ b/md/UBERON/16/UBERON_0010516.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010516 * *Label* = clasper - * *Definition* = a male anatomical structure found some groups of animals, used in mating. Male cartilaginous fish have claspers formed from the posterior portion of their pelvic fin which serve as intromittent organs used to channel semen into the female's cloaca during mating. The act of mating in some fish including sharks usually includes one of the claspers raised to allow water into the siphon through a specific orifice. The clasper is then inserted into the vagina, where it opens like an umbrella to anchor its position. The siphon then begins to contract expelling water and sperm. Male chimaeras have cephalic claspers on their heads, which are thought to aid in holding the female during mating [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:clasper] + * *Definition* = a male anatomical structure found some groups of animals, used in mating. Male cartilaginous fish have claspers formed from the posterior portion of their pelvic fin which serve as intromittent organs used to channel semen into the female's cloaca during mating. The act of mating in some fish including sharks usually includes one of the claspers raised to allow water into the siphon through a specific orifice. The clasper is then inserted into the vagina, where it opens like an umbrella to anchor its position. The siphon then begins to contract expelling water and sperm. Male chimaeras have cephalic claspers on their heads, which are thought to aid in holding the female during mating [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:clasper ] * *Comment* = Taxon notes: the term is also used for insect claspers, but we reserve it for the elasmobranchii structure ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0011016.md b/md/UBERON/16/UBERON_0011016.md index cbf897eb3d..b32fa73467 100644 --- a/md/UBERON/16/UBERON_0011016.md +++ b/md/UBERON/16/UBERON_0011016.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011016 * *Label* = pyramidalis - * *Definition* = The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramidalis_muscle] + * *Definition* = The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramidalis_muscle ] ## Synonyms - * pyramidalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15568] - * musculus pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramidalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramidalis_muscle] + * pyramidalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15568 ] + * musculus pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramidalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramidalis_muscle ] ## Cross-references * FMA:15568 * SCTID:244950003 - * UMLS:C0224374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pyramidalis] + * UMLS:C0224374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pyramidalis ] * Wikipedia:Pyramidalis_muscle * http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png * ncithesaurus:Pyramidalis @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0011216.md b/md/UBERON/16/UBERON_0011216.md index 2f791c8826..189360c95a 100644 --- a/md/UBERON/16/UBERON_0011216.md +++ b/md/UBERON/16/UBERON_0011216.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011216 * *Label* = organ system subdivision - * *Definition* = Anatomical structure, which consists of a specific set of the members of (predominantly) one organ or organ part subclass interconnected by zones of continuity or body substances; is demarcated from other subdivisions of the same organ system by one or more zones of continuity or anatomical lines; together with other subdivisions of the same organ system, it constitutes an organ system. Examples: rib cage, facial skeleton, portal system, central nervous system, upper respiratory tract, muscle group of back. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67509] + * *Definition* = Anatomical structure, which consists of a specific set of the members of (predominantly) one organ or organ part subclass interconnected by zones of continuity or body substances; is demarcated from other subdivisions of the same organ system by one or more zones of continuity or anatomical lines; together with other subdivisions of the same organ system, it constitutes an organ system. Examples: rib cage, facial skeleton, portal system, central nervous system, upper respiratory tract, muscle group of back. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67509 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0011316.md b/md/UBERON/16/UBERON_0011316.md index eec66a0a7e..62945eadc8 100644 --- a/md/UBERON/16/UBERON_0011316.md +++ b/md/UBERON/16/UBERON_0011316.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011316 * *Label* = nerve to stylohyoid from facial nerve - * *Definition* = The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_part_of_facial_nerve] + * *Definition* = The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_part_of_facial_nerve ] ## Synonyms - * facial nerve stylohyoid branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53298] - * nerve to stylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53298] - * ramus stylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53298] - * ramus stylohyoideus nervus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stylodigastric nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53298] - * stylohyoid branch of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53298] - * stylohyoid branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_part_of_facial_nerve] + * facial nerve stylohyoid branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53298 ] + * nerve to stylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53298 ] + * ramus stylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53298 ] + * ramus stylohyoideus nervus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stylodigastric nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53298 ] + * stylohyoid branch of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53298 ] + * stylohyoid branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_part_of_facial_nerve ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0012116.md b/md/UBERON/16/UBERON_0012116.md index 1b7fdf57da..0babaa0749 100644 --- a/md/UBERON/16/UBERON_0012116.md +++ b/md/UBERON/16/UBERON_0012116.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012116 * *Label* = nutrient foramen conduit - * *Definition* = any of the passages admitting nutrient vessels to the medullary cavity of bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/nutrient+foramen] + * *Definition* = any of the passages admitting nutrient vessels to the medullary cavity of bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/nutrient+foramen ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0012316.md b/md/UBERON/16/UBERON_0012316.md index d10272bd1f..a4129558e1 100644 --- a/md/UBERON/16/UBERON_0012316.md +++ b/md/UBERON/16/UBERON_0012316.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012316 * *Label* = primitive palate - * *Definition* = Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005509] + * palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005509 ] ## Cross-references @@ -34,8 +34,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof of the mouth lined with ciliated epithelium.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Early tetrapod possessed a primary palate that included the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. Therapsid evolved a partial secondary palate formed by the medial extension of the premaxilla and maxilla. Mammals have a secondary palate that, in addition to extensions of the premaxilla and maxilla, includes part of the palatine bone[VHOG] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0012416.md b/md/UBERON/16/UBERON_0012416.md index c918bb69bd..06e11fe36f 100644 --- a/md/UBERON/16/UBERON_0012416.md +++ b/md/UBERON/16/UBERON_0012416.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system arterial blood vessel](../../UBERON/43/UBERON_0003643.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012416 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0013116.md b/md/UBERON/16/UBERON_0013116.md index d98b589ff9..08a1b92d02 100644 --- a/md/UBERON/16/UBERON_0013116.md +++ b/md/UBERON/16/UBERON_0013116.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0013216.md b/md/UBERON/16/UBERON_0013216.md index b9fd58bbbb..ca10ef9596 100644 --- a/md/UBERON/16/UBERON_0013216.md +++ b/md/UBERON/16/UBERON_0013216.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013216 * *Label* = udder - * *Definition* = A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Udder] + * *Definition* = A large pendulous organ consisting of two or more mammary glands enclosed in a common envelope and each provided with a single nipple. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Udder ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An udder is an organ formed of the mammary glands of female quadruped mammals, especially ruminants such as cattle, goats, sheep and deer. The udder is a single mass hanging beneath the animal, consisting of pairs of mammary glands. In cattle there are normally two pairs, in sheep, goats and deer there is one pair, and in some animals such as pigs there are many pairs. Udder care and hygiene in cows is important in milking, aiding uninterrupted and untainted milk production, and preventing mastitis. Products exist to soothe the chapped skin of the udder. This helps prevent bacterial infection, and reduces irritation during milking by the cups, and so the cow is less likely to kick the cups off[Wikipedia:Udder]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013216 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0013516.md b/md/UBERON/16/UBERON_0013516.md index d879215176..b379b38d9f 100644 --- a/md/UBERON/16/UBERON_0013516.md +++ b/md/UBERON/16/UBERON_0013516.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013516 * *Label* = uterine tube magnum - * *Definition* = The second segment of the oviduct. This is where most of the egg white is added to the egg as it moves down the duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://caiquesite.com/glossary.htm] + * *Definition* = The second segment of the oviduct. This is where most of the egg white is added to the egg as it moves down the duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://caiquesite.com/glossary.htm ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013516 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0013616.md b/md/UBERON/16/UBERON_0013616.md index a9ae6d0707..c69ecfad5b 100644 --- a/md/UBERON/16/UBERON_0013616.md +++ b/md/UBERON/16/UBERON_0013616.md @@ -7,9 +7,9 @@ ## Synonyms - * deciduous molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84206] - * primary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84206] - * temporary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84206] + * deciduous molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84206 ] + * primary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84206 ] + * temporary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84206 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [molar tooth](../../UBERON/55/UBERON_0003655.md) and [part_of](../../BFO/50/BFO_0000050.md) some [primary dentition](../../UBERON/16/UBERON_0007116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0013716.md b/md/UBERON/16/UBERON_0013716.md index 49ea750b8e..9e87540ade 100644 --- a/md/UBERON/16/UBERON_0013716.md +++ b/md/UBERON/16/UBERON_0013716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013716 * *Label* = branch of ilio-marsupialis muscle - * *Definition* = One of the branches of the ilio-marsupialis that attaches to a pounch nipple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12432001[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = One of the branches of the ilio-marsupialis that attaches to a pounch nipple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12432001, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0014616.md b/md/UBERON/16/UBERON_0014616.md index ea977eec2b..c2d9e716bd 100644 --- a/md/UBERON/16/UBERON_0014616.md +++ b/md/UBERON/16/UBERON_0014616.md @@ -6,14 +6,14 @@ ## Synonyms - * dorsal nerve root of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1601[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * posterior nerve root of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1601] + * dorsal nerve root of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1601, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * posterior nerve root of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1601 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1601 * SCTID:367883007 - * UMLS:C1288559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1601] + * UMLS:C1288559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1601 ] ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014616 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0014716.md b/md/UBERON/16/UBERON_0014716.md index ab26042c1a..76690c6c71 100644 --- a/md/UBERON/16/UBERON_0014716.md +++ b/md/UBERON/16/UBERON_0014716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014716 * *Label* = interlobular duct - * *Definition* = A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Interlobular_Duct] + * *Definition* = A duct that is located between lobules, within the thin connective tissue septa that separate lobules. All interlobular ducts are excretory. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Interlobular_Duct ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [lobule](../../UBERON/11/UBERON_0009911.md) and [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [connective tissue](../../UBERON/84/UBERON_0002384.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014716 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0014916.md b/md/UBERON/16/UBERON_0014916.md index a52719b5c9..69834464af 100644 --- a/md/UBERON/16/UBERON_0014916.md +++ b/md/UBERON/16/UBERON_0014916.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014916 * *Label* = velar vocal fold - * *Definition* = On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1016/j.cub.2013.10.069] + * *Definition* = On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1016/j.cub.2013.10.069 ] * *Comment* = Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/CBITaxon_38625 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014916 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0015016.md b/md/UBERON/16/UBERON_0015016.md index 1e2a1daaa4..7c9ff4136c 100644 --- a/md/UBERON/16/UBERON_0015016.md +++ b/md/UBERON/16/UBERON_0015016.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015016 * *Label* = stapes endochondral element - * *Definition* = A stapes bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A stapes bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * stapes element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * stapes skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * stapes element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * stapes skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -18,19 +18,22 @@ ## Superclasses + * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [endochondral element](../../UBERON/63/UBERON_0010363.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) ## Equivalencies - * ObjectUnionOf( ) + * [stapes bone](../../UBERON/87/UBERON_0001687.md)or[stapes cartilage element](../../UBERON/55/UBERON_0010055.md)or[stapes pre-cartilage condensation](../../UBERON/94/UBERON_0006294.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_0015116.md b/md/UBERON/16/UBERON_0015116.md index e9b7b66ca8..3930dfe729 100644 --- a/md/UBERON/16/UBERON_0015116.md +++ b/md/UBERON/16/UBERON_0015116.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal tarsal bone 5 endochondral element](../../UBERON/14/UBERON_0015114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015116 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_1000016.md b/md/UBERON/16/UBERON_1000016.md index a014260206..63f6f4ebb6 100644 --- a/md/UBERON/16/UBERON_1000016.md +++ b/md/UBERON/16/UBERON_1000016.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000016 * *Label* = tip of snout - * *Definition* = Subdivision of the head consisting of the pointed or rounded end or extremity of the snout. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the pointed or rounded end or extremity of the snout. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000016 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000116.md b/md/UBERON/16/UBERON_2000116.md index 911efb69c5..97fcbf9704 100644 --- a/md/UBERON/16/UBERON_2000116.md +++ b/md/UBERON/16/UBERON_2000116.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000216.md b/md/UBERON/16/UBERON_2000216.md index 1a84222e8a..b162b9fc8f 100644 --- a/md/UBERON/16/UBERON_2000216.md +++ b/md/UBERON/16/UBERON_2000216.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000516.md b/md/UBERON/16/UBERON_2000516.md index 26ae422722..2004642aa0 100644 --- a/md/UBERON/16/UBERON_2000516.md +++ b/md/UBERON/16/UBERON_2000516.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000616.md b/md/UBERON/16/UBERON_2000616.md index 1f4fac7e67..c4ad941dfd 100644 --- a/md/UBERON/16/UBERON_2000616.md +++ b/md/UBERON/16/UBERON_2000616.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000716.md b/md/UBERON/16/UBERON_2000716.md index 4c3eac74b7..862736ca48 100644 --- a/md/UBERON/16/UBERON_2000716.md +++ b/md/UBERON/16/UBERON_2000716.md @@ -6,7 +6,7 @@ ## Synonyms - * ABA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000716] + * ABA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000716 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2000916.md b/md/UBERON/16/UBERON_2000916.md index f8c6a6b85b..8e844c5fc8 100644 --- a/md/UBERON/16/UBERON_2000916.md +++ b/md/UBERON/16/UBERON_2000916.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000916[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000916, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/16/UBERON_2001016.md b/md/UBERON/16/UBERON_2001016.md index 1adb949cd5..98034af760 100644 --- a/md/UBERON/16/UBERON_2001016.md +++ b/md/UBERON/16/UBERON_2001016.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001016 * *Label* = myotome somite 2 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001316.md b/md/UBERON/16/UBERON_2001316.md index e88a8c8add..f841363166 100644 --- a/md/UBERON/16/UBERON_2001316.md +++ b/md/UBERON/16/UBERON_2001316.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001316 * *Label* = anterior lateral line placode - * *Definition* = Dorsolateral placode that gives rise to the anterior lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001316[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Dorsolateral placode that gives rise to the anterior lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001316, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms - * anterior lateral line placodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001316[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * pre-auditory lateral line placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004221] + * anterior lateral line placodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001316, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * pre-auditory lateral line placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004221 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsolateral placode](../../UBERON/67/UBERON_0003067.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior lateral line system](../../UBERON/68/UBERON_2001468.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lateral line placode that gives rise to the anterior lateral line nerve[XAO:0004221, XAO:EJS]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001316 + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001416.md b/md/UBERON/16/UBERON_2001416.md index aea4f96350..1dc83edb56 100644 --- a/md/UBERON/16/UBERON_2001416.md +++ b/md/UBERON/16/UBERON_2001416.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001416 * *Label* = pelvic fin distal radial bone 3 - * *Definition* = pelvic fin distal radial 3 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 3 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pelvic fin distal radial element 3](../../UBERON/16/UBERON_2101416.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001516.md b/md/UBERON/16/UBERON_2001516.md index 5af75ca54e..c55655d8bd 100644 --- a/md/UBERON/16/UBERON_2001516.md +++ b/md/UBERON/16/UBERON_2001516.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001516 * *Label* = ceratobranchial cartilage - * *Definition* = Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001616.md b/md/UBERON/16/UBERON_2001616.md index a4c5c47e26..79a8ac749a 100644 --- a/md/UBERON/16/UBERON_2001616.md +++ b/md/UBERON/16/UBERON_2001616.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001616 * *Label* = lateral ethmoid wing - * *Definition* = Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). ## Synonyms - * lateral ethmoid ventral wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001616] + * lateral ethmoid ventral wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001616 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001716.md b/md/UBERON/16/UBERON_2001716.md index 0a4440d0c5..39606fa0d4 100644 --- a/md/UBERON/16/UBERON_2001716.md +++ b/md/UBERON/16/UBERON_2001716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001716 * *Label* = caudal principal ray 4 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001816.md b/md/UBERON/16/UBERON_2001816.md index 41914b48f4..d23caccb71 100644 --- a/md/UBERON/16/UBERON_2001816.md +++ b/md/UBERON/16/UBERON_2001816.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001816 * *Label* = anterior nuchal plate - * *Definition* = Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * first nuchal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001816] + * first nuchal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001816 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2001916.md b/md/UBERON/16/UBERON_2001916.md index 1a8895dbf6..336811de81 100644 --- a/md/UBERON/16/UBERON_2001916.md +++ b/md/UBERON/16/UBERON_2001916.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001916 * *Label* = basibranchial 2 element - * *Definition* = Skeletal element that is median and associated with branchial arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is median and associated with branchial arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2002016.md b/md/UBERON/16/UBERON_2002016.md index 7b90abdc69..87d8ff3853 100644 --- a/md/UBERON/16/UBERON_2002016.md +++ b/md/UBERON/16/UBERON_2002016.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002016 * *Label* = pharyngobranchial 4 tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngobranchial 4 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002016] + * pharyngobranchial 4 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002016 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2002116.md b/md/UBERON/16/UBERON_2002116.md index 89e3dbfe52..a7d4611291 100644 --- a/md/UBERON/16/UBERON_2002116.md +++ b/md/UBERON/16/UBERON_2002116.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2002216.md b/md/UBERON/16/UBERON_2002216.md index cc41092701..7373ba1900 100644 --- a/md/UBERON/16/UBERON_2002216.md +++ b/md/UBERON/16/UBERON_2002216.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2005116.md b/md/UBERON/16/UBERON_2005116.md index 1eeee113ac..3eec1777bf 100644 --- a/md/UBERON/16/UBERON_2005116.md +++ b/md/UBERON/16/UBERON_2005116.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005116 * *Label* = secondary posterior lateral line primordium - * *Definition* = Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * secondary posterior lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * secondary posterior lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2005216.md b/md/UBERON/16/UBERON_2005216.md index ff00f5d1ab..b28dd44d24 100644 --- a/md/UBERON/16/UBERON_2005216.md +++ b/md/UBERON/16/UBERON_2005216.md @@ -6,7 +6,7 @@ ## Synonyms - * mesencephalon medial 1 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005216] + * mesencephalon medial 1 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005216 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/16/UBERON_2005316.md b/md/UBERON/16/UBERON_2005316.md index f19be094a1..ba42b9b0ec 100644 --- a/md/UBERON/16/UBERON_2005316.md +++ b/md/UBERON/16/UBERON_2005316.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005316 * *Label* = fin fold pectoral fin bud - * *Definition* = Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-001101-7[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-990210-18] + * *Definition* = Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-001101-7, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-990210-18 ] ## Synonyms - * fin-fold pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005316] - * fin membrane pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005316] + * fin-fold pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005316 ] + * fin membrane pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005316 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2005416.md b/md/UBERON/16/UBERON_2005416.md index e7c7c18df2..4ace0edbcf 100644 --- a/md/UBERON/16/UBERON_2005416.md +++ b/md/UBERON/16/UBERON_2005416.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2101416.md b/md/UBERON/16/UBERON_2101416.md index 11e032dcfa..7e1fbd5abb 100644 --- a/md/UBERON/16/UBERON_2101416.md +++ b/md/UBERON/16/UBERON_2101416.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_2201416.md b/md/UBERON/16/UBERON_2201416.md index 9ca84ef8d0..bf24dd5cd8 100644 --- a/md/UBERON/16/UBERON_2201416.md +++ b/md/UBERON/16/UBERON_2201416.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201416 * *Label* = pelvic fin distal radial cartilage 3 - * *Definition* = pelvic fin distal radial 3 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 3 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pelvic fin distal radial element 3](../../UBERON/16/UBERON_2101416.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000016.md b/md/UBERON/16/UBERON_3000016.md index 81bb238ee6..2155198107 100644 --- a/md/UBERON/16/UBERON_3000016.md +++ b/md/UBERON/16/UBERON_3000016.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000016 * *Label* = anterior nasal wall - * *Definition* = Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * prenasal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000016] - * solum anterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000016] + * prenasal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000016 ] + * solum anterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000016 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000316.md b/md/UBERON/16/UBERON_3000316.md index e19318f234..0bf443c81a 100644 --- a/md/UBERON/16/UBERON_3000316.md +++ b/md/UBERON/16/UBERON_3000316.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000516.md b/md/UBERON/16/UBERON_3000516.md index 99ad279e72..8a53e92148 100644 --- a/md/UBERON/16/UBERON_3000516.md +++ b/md/UBERON/16/UBERON_3000516.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000716.md b/md/UBERON/16/UBERON_3000716.md index 7d4bb80b1d..2c292cb52e 100644 --- a/md/UBERON/16/UBERON_3000716.md +++ b/md/UBERON/16/UBERON_3000716.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000716 * *Label* = acoelous - * *Definition* = Vertebral centrum with flat ends. Between successive vertebrae there is a fibrocartilaginous intervertebral body with a gel-like core, the nucleus pulposus, which is derived from the embryonic notochord. Acoelous vertebrae seem especially suited to receive and distribute compressive forces within the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Vertebral centrum with flat ends. Between successive vertebrae there is a fibrocartilaginous intervertebral body with a gel-like core, the nucleus pulposus, which is derived from the embryonic notochord. Acoelous vertebrae seem especially suited to receive and distribute compressive forces within the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000816.md b/md/UBERON/16/UBERON_3000816.md index f852db8268..18386db3d3 100644 --- a/md/UBERON/16/UBERON_3000816.md +++ b/md/UBERON/16/UBERON_3000816.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000816 * *Label* = margo fenestralis - * *Definition* = Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3000916.md b/md/UBERON/16/UBERON_3000916.md index 658997b69a..f63278a924 100644 --- a/md/UBERON/16/UBERON_3000916.md +++ b/md/UBERON/16/UBERON_3000916.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000916 * *Label* = apophysis proximalis - * *Definition* = Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3010116.md b/md/UBERON/16/UBERON_3010116.md index 2d0339ca61..a497a73f2d 100644 --- a/md/UBERON/16/UBERON_3010116.md +++ b/md/UBERON/16/UBERON_3010116.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_3010516.md b/md/UBERON/16/UBERON_3010516.md index e592d3d1b4..ee8c6e235e 100644 --- a/md/UBERON/16/UBERON_3010516.md +++ b/md/UBERON/16/UBERON_3010516.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010516 * *Label* = cutaneus magnus - * *Definition* = Anterior part of the lateral vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Anterior part of the lateral vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_4000016.md b/md/UBERON/16/UBERON_4000016.md index 5eaa33dd56..87e5dd12a6 100644 --- a/md/UBERON/16/UBERON_4000016.md +++ b/md/UBERON/16/UBERON_4000016.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/16/UBERON_4000116.md b/md/UBERON/16/UBERON_4000116.md index c43ae02b9f..e1dbc1b8f7 100644 --- a/md/UBERON/16/UBERON_4000116.md +++ b/md/UBERON/16/UBERON_4000116.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000116 * *Label* = obsolete terminally differentiated osteoblast - * *Definition* = Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0001039 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/16/UBERON_4100016.md b/md/UBERON/16/UBERON_4100016.md index 883601f5e7..456b4d0638 100644 --- a/md/UBERON/16/UBERON_4100016.md +++ b/md/UBERON/16/UBERON_4100016.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_4200016.md b/md/UBERON/16/UBERON_4200016.md index c72aec4657..748e8d9056 100644 --- a/md/UBERON/16/UBERON_4200016.md +++ b/md/UBERON/16/UBERON_4200016.md @@ -33,7 +33,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_4200116.md b/md/UBERON/16/UBERON_4200116.md index 4a7dfc07b3..fa4de1797f 100644 --- a/md/UBERON/16/UBERON_4200116.md +++ b/md/UBERON/16/UBERON_4200116.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/16/UBERON_4300016.md b/md/UBERON/16/UBERON_4300016.md index 1b6f46da48..a0db50405c 100644 --- a/md/UBERON/16/UBERON_4300016.md +++ b/md/UBERON/16/UBERON_4300016.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0000017.md b/md/UBERON/17/UBERON_0000017.md index 3071f20f89..7259ffc6a0 100644 --- a/md/UBERON/17/UBERON_0000017.md +++ b/md/UBERON/17/UBERON_0000017.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000017 * *Label* = exocrine pancreas - * *Definition* = The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:GO[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exocrine_component_of_pancreas] + * *Definition* = The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:GO, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exocrine_component_of_pancreas ] ## Synonyms * exocrine pancreas * pars exocrina pancreatis - * exocrine part of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000434] + * exocrine part of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000434 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002415 * SCTID:248202004 * TAO:0001249 - * UMLS:C0553695 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Exocrine_Pancreas] + * UMLS:C0553695 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Exocrine_Pancreas ] * VHOG:0000048 * Wikipedia:Exocrine_component_of_pancreas * XAO:0000137 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the pancreas that acts as an exocrine gland, consisting of the pancreatic acini, which produce pancreatic juice and secrete it into the intestine to aid in protein digestion. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0000117.md b/md/UBERON/17/UBERON_0000117.md index fa4d22ac1e..05e6d22634 100644 --- a/md/UBERON/17/UBERON_0000117.md +++ b/md/UBERON/17/UBERON_0000117.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000117 * *Label* = respiratory tube - * *Definition* = A tube in the respiratory system. Examples: bronchus, bronchiole, trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030323[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A tube in the respiratory system. Examples: bronchus, bronchiole, trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030323, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = AO notes: in GO lung development is part of respiratory tube development. This can lead to inconsistencies with other ontologies, e.g. VT. The GO structure may be better represneted by a tree of tubes (see the FMA class) ## Synonyms - * segment of tracheobronchial tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12224] + * segment of tracheobronchial tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12224 ] * respiratory conducting tube - * segment of tracheobronchial tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12224] - * tracheobronchial tree segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12224] + * segment of tracheobronchial tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12224 ] + * tracheobronchial tree segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12224 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory tract](../../UBERON/65/UBERON_0000065.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0000317.md b/md/UBERON/17/UBERON_0000317.md index 241a31ccb6..fd8652eddf 100644 --- a/md/UBERON/17/UBERON_0000317.md +++ b/md/UBERON/17/UBERON_0000317.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000317 * *Label* = colonic mucosa - * *Definition* = Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Mucosa that is part of a colon. The mucosa of the colon is lined by a simple columnar epithelium with a thin brush border and numerous goblet cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * colon mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14984] - * colon mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colon mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colon organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * colon mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14984 ] + * colon mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colon mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colon organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * colonic mucosa - * colonic mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14984] - * large bowel mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14984] - * mucosa of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of segment of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85388] - * mucous membrane of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * colonic mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14984 ] + * large bowel mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14984 ] + * mucosa of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of segment of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85388 ] + * mucous membrane of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003347 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004981 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0000917.md b/md/UBERON/17/UBERON_0000917.md index e032f23345..ee2b219b96 100644 --- a/md/UBERON/17/UBERON_0000917.md +++ b/md/UBERON/17/UBERON_0000917.md @@ -6,7 +6,7 @@ ## Synonyms - * segment of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * segment of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000016 * *[consider](../../er/oboInOwl#consider.md)* = SPD:0000055 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0002417 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000917 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_0001017.md b/md/UBERON/17/UBERON_0001017.md index a84925e122..f1cab46226 100644 --- a/md/UBERON/17/UBERON_0001017.md +++ b/md/UBERON/17/UBERON_0001017.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001017 * *Label* = central nervous system - * *Definition* = The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021551] + * *Definition* = The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021551 ] ## Synonyms * CNS - * cerebrospinal axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55675] - * neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55675] - * systema nervosum centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55675[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basal nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * basolateral nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * basolateral nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * nucleus amygdalae basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cerebrospinal axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55675 ] + * neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55675 ] + * systema nervosum centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55675, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basal nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * basolateral nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * basolateral nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * nucleus amygdalae basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,12 +39,12 @@ * MAT:0000457 * MESH:A08.186 * NIF_GrossAnatomy:birnlex_1099 - * NeuroNames:246 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1099] + * NeuroNames:246 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1099 ] * OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA * SCTID:278199004 * TAO:0000012 - * UMLS:C0927232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1099] - * UMLS:C0927232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Central_Nervous_System] + * UMLS:C0927232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1099 ] + * UMLS:C0927232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Central_Nervous_System ] * VHOG:0000293 * Wikipedia:Central_nervous_system * XAO:0000215 @@ -79,8 +79,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The central nervous system (CNS) is the part of the nervous system which includes the brain, spinal cord, and nerve cell layer of the retina. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2); Taken together, our data make a very strong case that the complex molecular mediolateral architecture of the developing trunk CNS (central nervous system), as shared between Platynereis and vertebrates, was already present in their last common ancestor, Urbilateria. The concept of bilaterian nervous system centralization implies that neuron types concentrate on one side of the trunk, as is the case in vertebrates and many invertebrates including Platynereis, where they segregate and become spatially organized (as opposed to a diffuse nerve net). Our data reveal that a large part of the spatial organization of the annelid and vertebrate CNS was already present in their last common ancestor, which implies that Urbilateria had already possessed a CNS (reference 3).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001117.md b/md/UBERON/17/UBERON_0001117.md index 8f0d482c1e..433532cab3 100644 --- a/md/UBERON/17/UBERON_0001117.md +++ b/md/UBERON/17/UBERON_0001117.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001117 * *Label* = caudate lobe of liver - * *Definition* = The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudate_lobe_of_liver] + * *Definition* = The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudate_lobe_of_liver ] * *Comment* = Editor/taxon notes: Check left vs right in mouse and human ## Synonyms * Spiegelian lobe * Spigel lobe - * couinaud hepatic segment I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13365] + * couinaud hepatic segment I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13365 ] * hepatovenous segment I * liver caudate lobe - * lobus caudatus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars posterior hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus caudatus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars posterior hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * posterior hepatic segment i * posterior liver * posterior part of liver * segment I of liver - * segmentum hepatis I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * segmentum hepatis I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * liver caudate process - * segment hepatis posterius I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudate_lobe_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * segment hepatis posterius I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudate_lobe_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:13365 * MA:0000364 * SCTID:362184009 - * UMLS:C0227489 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lobus_Caudatus] + * UMLS:C0227489 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lobus_Caudatus ] * VHOG:0000508 * Wikipedia:Caudate_lobe_of_liver * http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The caudate lobe is the only real and constant hepatic lobe of mammals (...) .[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001217.md b/md/UBERON/17/UBERON_0001217.md index f0f6922654..3f299b068f 100644 --- a/md/UBERON/17/UBERON_0001217.md +++ b/md/UBERON/17/UBERON_0001217.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001217 * *Label* = ileal vein - * *Definition* = The veins that drain blood from the ileum into the superior mesenteric vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Ileal_Vein] + * *Definition* = The veins that drain blood from the ileum into the superior mesenteric vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Ileal_Vein ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:15405 * MA:0002140 - * UMLS:C1301431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ileal_Vein] + * UMLS:C1301431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ileal_Vein ] * Wikipedia:Ileal_veins * ncithesaurus:Ileal_Vein @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [ileum](../../UBERON/16/UBERON_0002116.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001317.md b/md/UBERON/17/UBERON_0001317.md index c3b81d2f3c..6e2459697a 100644 --- a/md/UBERON/17/UBERON_0001317.md +++ b/md/UBERON/17/UBERON_0001317.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001317 * *Label* = internal iliac vein - * *Definition* = The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_iliac_vein] + * *Definition* = The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_iliac_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * v. hypogastrica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_iliac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * v. iliaca interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_iliac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * v. hypogastrica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_iliac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * v. iliaca interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_iliac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:18884 * MA:0002145 * SCTID:181399007 - * UMLS:C0226764 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Iliac_Vein] + * UMLS:C0226764 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Iliac_Vein ] * VHOG:0000749 * Wikipedia:Internal_iliac_vein * galen:InternalIliacVein @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001417.md b/md/UBERON/17/UBERON_0001417.md index a73d3adb87..edd9986615 100644 --- a/md/UBERON/17/UBERON_0001417.md +++ b/md/UBERON/17/UBERON_0001417.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001417 * *Label* = skin of neck - * *Definition* = A zone of skin that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * neck (volume) zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neck (volume) zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * neck skin - * neck zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neck zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:23022 * MA:0000590 * SCTID:361705004 - * UMLS:C0205030 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neck_Skin] + * UMLS:C0205030 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neck_Skin ] * ncithesaurus:Neck_Skin ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001517.md b/md/UBERON/17/UBERON_0001517.md index 7bd326882c..f4a9f43da2 100644 --- a/md/UBERON/17/UBERON_0001517.md +++ b/md/UBERON/17/UBERON_0001517.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001517 * *Label* = skin of elbow - * *Definition* = A zone of skin that is part of a elbow [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a elbow [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cubital region zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cubital region zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * elbow skin - * elbow zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * elbow zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:38250 * MA:0000610 * SCTID:181534001 - * UMLS:C0222213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Elbow_Skin] + * UMLS:C0222213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Elbow_Skin ] * ncithesaurus:Elbow_Skin ## Subsets @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [elbow](../../UBERON/61/UBERON_0001461.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003399 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001617.md b/md/UBERON/17/UBERON_0001617.md index 4ce3005d48..c90db8c7c3 100644 --- a/md/UBERON/17/UBERON_0001617.md +++ b/md/UBERON/17/UBERON_0001617.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001617 * *Label* = mental artery - * *Definition* = The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mental_artery] + * *Definition* = The mental branch of inferior alveolar artery escapes with the nerve at the mental foramen, supplies the chin, and anastomoses with the submental and inferior labial arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mental_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * mental branch of inferior alveolar artery - * ramus mentalis (arteria alveolaris inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49701[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ramus mentalis (arteria alveolaris inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49701, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49701 * MA:0002002 * SCTID:147561008 - * UMLS:C0226144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mental_Artery] + * UMLS:C0226144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mental_Artery ] * Wikipedia:Mental_part_of_inferior_alveolar_artery * ncithesaurus:Mental_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001717.md b/md/UBERON/17/UBERON_0001717.md index 3c96c94300..11c799c622 100644 --- a/md/UBERON/17/UBERON_0001717.md +++ b/md/UBERON/17/UBERON_0001717.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001717 * *Label* = spinal nucleus of trigeminal nerve - * *Definition* = The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_trigeminal_nucleus] + * *Definition* = The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_trigeminal_nucleus ] ## Synonyms * spinal nucleus of cranial nerve v - * spinal trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021741] + * spinal trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021741 ] * trigeminal nerve spinal tract nucleus * trigeminal spinal nucleus * trigeminal v spinal sensory nucleus - * Spinal nucleus of the trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPV] - * nucleus spinalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_trigeminal_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Spinal nucleus of the trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPV ] + * nucleus spinalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_trigeminal_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A08.186.211.132.931.920 * NeuroNames:1732 * SCTID:369033006 - * UMLS:C0041000 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve] + * UMLS:C0041000 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve ] * VHOG:0001357 * Wikipedia:Spinal_trigeminal_nucleus * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001817.md b/md/UBERON/17/UBERON_0001817.md index 7834f6d6a3..4b6f5e61ab 100644 --- a/md/UBERON/17/UBERON_0001817.md +++ b/md/UBERON/17/UBERON_0001817.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001817 * *Label* = lacrimal gland - * *Definition* = The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_gland] + * *Definition* = The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_gland ] ## Synonyms - * glandula lacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lacrimal-preorbital gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * glandula praeorbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preorbital_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * preorbital gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preorbital_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * tear gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000044] + * glandula lacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lacrimal-preorbital gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * glandula praeorbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preorbital_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * preorbital gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preorbital_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * tear gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000044 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:59101 * MA:0001296 * SCTID:181147003 - * UMLS:C0022907 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Gland] + * UMLS:C0022907 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Gland ] * VHOG:0001476 * Wikipedia:Lacrimal_gland * Wikipedia:Preorbital_gland @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The preorbital gland is a paired exocrine gland found in many species of hoofed animals, which is homologous to the lacrimal gland found in humans. These glands are trenchlike slits of dark blue to black, nearly bare skin extending from the medial canthus of each eye. They are lined by a combination of sebaceous and sudoriferous glands, and they produce secretions which contain pheromones and other semiochemical compounds. Ungulates frequently deposit these secretions on twigs and grass as a means of communication with other animals. The preorbital gland serves different roles in different species. Pheromone-containing secretions from the preorbital gland may serve to establish an animal's dominance (especially in preparation for breeding), mark its territory, or simply to produce a pleasurable sensation to the animal. Because of its critical role in scent marking, the preorbital gland is usually considered as a type of scent gland. A further function of these glands may be to produce antimicrobial compounds against skin pathogens. Antimicrobial compounds found in these glands may be biosynthesized by the animal itself, or by microorganisms that live in these glands[Wikipedia:Preorbital_gland]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0001917.md b/md/UBERON/17/UBERON_0001917.md index 71d5d8a321..3d7768ed9e 100644 --- a/md/UBERON/17/UBERON_0001917.md +++ b/md/UBERON/17/UBERON_0001917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001917 * *Label* = endothelium of artery - * *Definition* = An endothelium that is part of an artery [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of an artery [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -17,7 +17,7 @@ * BTO:0004757 * FMA:62116 * MA:0000707 - * UMLS:C1179025 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Artery_Endothelium] + * UMLS:C1179025 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Artery_Endothelium ] * VHOG:0001215 * XAO:0000357 * ncithesaurus:Artery_Endothelium @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The endothelium is the thin layer of cells that lines the interior surface of blood vessels, forming an interface between circulating blood in the lumen and the rest of the vessel wall.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002017.md b/md/UBERON/17/UBERON_0002017.md index 6fd12f1d73..7971363a15 100644 --- a/md/UBERON/17/UBERON_0002017.md +++ b/md/UBERON/17/UBERON_0002017.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002017 * *Label* = portal vein - * *Definition* = A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001792] + * *Definition* = A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001792 ] ## Synonyms - * portal venous tree organ part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66645] + * portal venous tree organ part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66645 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.231.908.670.567 * OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA * SCTID:362064007 - * UMLS:C0032718 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Portal_Vein] + * UMLS:C0032718 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Portal_Vein ] * VHOG:0000656 * XAO:0000392 * galen:PortalVein @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002217.md b/md/UBERON/17/UBERON_0002217.md index e0df683a95..8dfce70f7b 100644 --- a/md/UBERON/17/UBERON_0002217.md +++ b/md/UBERON/17/UBERON_0002217.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002217 * *Label* = synovial joint - * *Definition* = Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_joint] + * *Definition* = Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_joint ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * articulatio synoviale - * diarthroses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005153[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * diarthroses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005153, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * diarthrosis * diarthrosis joint - * diarthrodial joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005153[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * diarthrodial joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005153, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002317.md b/md/UBERON/17/UBERON_0002317.md index 239c012a4e..b00c46c440 100644 --- a/md/UBERON/17/UBERON_0002317.md +++ b/md/UBERON/17/UBERON_0002317.md @@ -9,9 +9,9 @@ * cerebellar white matter * cerebellum white matter - * medullary substance of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:691] - * substantia centralis medullaris cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:691[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia medullaris cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:691[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medullary substance of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:691 ] + * substantia centralis medullaris cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:691, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia medullaris cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:691, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,11 +20,11 @@ * FMA:83943 * MA:0002430 * NIF_GrossAnatomy:birnlex_1562 - * NeuroNames:691 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1562] + * NeuroNames:691 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1562 ] * SCTID:362412009 * TAO:0002183 - * UMLS:C0152381 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1562] - * UMLS:C0152381 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellum_White_Matter] + * UMLS:C0152381 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1562 ] + * UMLS:C0152381 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellum_White_Matter ] * ZFA:0001708 * ncithesaurus:Cerebellum_White_Matter @@ -36,7 +36,7 @@ * [white matter](../../UBERON/16/UBERON_0002316.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Equivalencies @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = CNS white matter that is part of the cerebellum.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002417.md b/md/UBERON/17/UBERON_0002417.md index f0c65c7dab..292f5cd5fb 100644 --- a/md/UBERON/17/UBERON_0002417.md +++ b/md/UBERON/17/UBERON_0002417.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002417 * *Label* = abdominal segment of trunk - * *Definition* = the abdominal segment of the torso. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar] + * *Definition* = the abdominal segment of the torso. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar ] ## Synonyms - * abdomen/pelvis/perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000021] - * lower body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000021] - * lumbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * abdomen/pelvis/perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000021 ] + * lower body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000021 ] + * lumbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002517.md b/md/UBERON/17/UBERON_0002517.md index 3950b3ae93..59153a2840 100644 --- a/md/UBERON/17/UBERON_0002517.md +++ b/md/UBERON/17/UBERON_0002517.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002517 * *Label* = basicranium - * *Definition* = The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Base_of_skull] + * *Definition* = The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Base_of_skull ] * *Comment* = The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816] ## Synonyms * base of skull - * basis cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52801[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basis cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52801, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * skull base - * basis cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Base_of_skull[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cranial base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002840] + * basis cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Base_of_skull, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cranial base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002840 ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002840 * MESH:A01.456.830 * SCTID:181890004 - * UMLS:C0149543 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Base_of_the_Skull] + * UMLS:C0149543 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Base_of_the_Skull ] * Wikipedia:Base_of_skull * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png @@ -46,8 +46,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = basicranial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002617.md b/md/UBERON/17/UBERON_0002617.md index 418ce96e16..1291af3460 100644 --- a/md/UBERON/17/UBERON_0002617.md +++ b/md/UBERON/17/UBERON_0002617.md @@ -6,24 +6,24 @@ ## Synonyms - * nucleus dorsointermedius externus magnocellularis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1170] - * nucleus lateralis intermedius mediodorsalis situs postremus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1170] - * nucleus ventralis lateralis thalami, pars postrema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1170] + * nucleus dorsointermedius externus magnocellularis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1170 ] + * nucleus lateralis intermedius mediodorsalis situs postremus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1170 ] + * nucleus ventralis lateralis thalami, pars postrema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1170 ] * posterodorsal part of ventral lateral posterior nucleus (jones) - * ventral lateral nucleus (pars postrema) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62196] - * VLP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1170[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis lateralis, pars postrema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:341[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars postrema of the ventral lateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:341] - * ventrolateral posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VLP] - * ventrolateral preoptic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VLP] + * ventral lateral nucleus (pars postrema) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62196 ] + * VLP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1170, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis lateralis, pars postrema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:341, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars postrema of the ventral lateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:341 ] + * ventrolateral posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VLP ] + * ventrolateral preoptic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VLP ] ## Cross-references * BAMS:VLP * FMA:62196 * NIF_GrossAnatomy:birnlex_1170 - * NeuroNames:341 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1170] - * UMLS:C0262304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1170] + * NeuroNames:341 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1170 ] + * UMLS:C0262304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1170 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002717.md b/md/UBERON/17/UBERON_0002717.md index 9d50da3671..09592dfb2e 100644 --- a/md/UBERON/17/UBERON_0002717.md +++ b/md/UBERON/17/UBERON_0002717.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002717 * *Label* = rostral interstitial nucleus of medial longitudinal fasciculus - * *Definition* = The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] + * *Definition* = The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus ] ## Synonyms - * riMLF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * rostral interstitial nucleus of MLF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72433] - * RI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1481[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus interstitialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interstitialis rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:516[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rostral interstitial nucleus of the medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:516] + * riMLF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * rostral interstitial nucleus of MLF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72433 ] + * RI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1481, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus interstitialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interstitialis rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:516, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rostral interstitial nucleus of the medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:516 ] ## Cross-references * BAMS:RI * FMA:72433 * NIF_GrossAnatomy:birnlex_1481 - * NeuroNames:516 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1481] - * UMLS:C0175403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1481] + * NeuroNames:516 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1481 ] + * UMLS:C0175403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1481 ] * Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus * http://upload.wikimedia.org/wikipedia/commons/9/90/Gray710.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Gray710.png/200px-Gray710.png @@ -33,7 +33,7 @@ * [nucleus of midbrain tegmentum](../../UBERON/14/UBERON_0007414.md) * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medial longitudinal fasciculus of midbrain](../../UBERON/60/UBERON_0002660.md) ## Equivalencies @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002817.md b/md/UBERON/17/UBERON_0002817.md index 1834745de9..e24294ea91 100644 --- a/md/UBERON/17/UBERON_0002817.md +++ b/md/UBERON/17/UBERON_0002817.md @@ -6,12 +6,12 @@ ## Synonyms - * fissura postpyramidalis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84043[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * post-pyramidal fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84043] - * postpyramidal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84043] - * secondary fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84043] - * secondary fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84043] - * simian fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sf] + * fissura postpyramidalis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84043, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * post-pyramidal fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84043 ] + * postpyramidal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84043 ] + * secondary fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84043 ] + * secondary fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84043 ] + * simian fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sf ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0002917.md b/md/UBERON/17/UBERON_0002917.md index 75c151d7ef..9f43faa0ab 100644 --- a/md/UBERON/17/UBERON_0002917.md +++ b/md/UBERON/17/UBERON_0002917.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002917 * *Label* = regional part of inferior colliculus - * *Definition* = A regional part of brain that is part of a inferior colliculus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a inferior colliculus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inferior colliculus segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77871] - * segment of inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4036] + * inferior colliculus segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77871 ] + * segment of inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4036 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior colliculus](../../UBERON/46/UBERON_0001946.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003017.md b/md/UBERON/17/UBERON_0003017.md index 57fe8a2bd9..72e8e505da 100644 --- a/md/UBERON/17/UBERON_0003017.md +++ b/md/UBERON/17/UBERON_0003017.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003017 * *Label* = substantia innominata - * *Definition* = The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Substantia_innominata] + * *Definition* = The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Substantia_innominata ] ## Synonyms - * innominate substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61885] - * nucleus of substantia innominata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61885] - * substantia innominata (Reil, Reichert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:274] - * substantia innominata of Meynert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:274[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia innominata of Reichert [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002447] - * substantia innominata of Reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002447] - * substriatal gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:274] + * innominate substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61885 ] + * nucleus of substantia innominata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61885 ] + * substantia innominata (Reil, Reichert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:274 ] + * substantia innominata of Meynert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:274, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia innominata of Reichert [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002447 ] + * substantia innominata of Reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002447 ] + * substriatal gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:274 ] ## Cross-references @@ -25,8 +25,8 @@ * GAID:638 * MESH:A08.186.211.577.820 * NIF_GrossAnatomy:birnlex_915 - * NeuroNames:274 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_915] - * UMLS:C0038589 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_915] + * NeuroNames:274 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_915 ] + * UMLS:C0038589 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_915 ] * Wikipedia:Substantia_innominata * http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Substantia_innominata_MRI.PNG/200px-Substantia_innominata_MRI.PNG @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003117.md b/md/UBERON/17/UBERON_0003117.md index 4b8a3e932f..719228f467 100644 --- a/md/UBERON/17/UBERON_0003117.md +++ b/md/UBERON/17/UBERON_0003117.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003117 * *Label* = pharyngeal arch 6 - * *Definition* = The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006347] + * *Definition* = The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006347 ] ## Synonyms - * 6th arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004075] - * gill arch 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001609] + * 6th arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004075 ] + * gill arch 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001609 ] * sixth branchial arch - * visceral arch 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001609] - * 6th pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001205] - * 6th visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001205] - * branchial arch 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010368[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001609[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fourth branchial arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * sixth pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001205] - * sixth visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000453] + * visceral arch 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001609 ] + * 6th pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001205 ] + * 6th visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001205 ] + * branchial arch 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010368, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001609, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fourth branchial arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * sixth pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001205 ] + * sixth visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000453 ] ## Cross-references @@ -49,8 +49,9 @@ * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 6 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004349 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003217.md b/md/UBERON/17/UBERON_0003217.md index 4f5edef49a..1a1846412b 100644 --- a/md/UBERON/17/UBERON_0003217.md +++ b/md/UBERON/17/UBERON_0003217.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003217 * *Label* = neural lobe of neurohypophysis - * *Definition* = The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurohypophysis#cite_note-1] + * *Definition* = The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurohypophysis#cite_note-1 ] * *Comment* = TODO - compare with UBERON:0002198 ## Synonyms - * pars nervosa (neurohypophysis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74636[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars nervosa neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74636[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars nervosa (neurohypophysis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74636, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars nervosa neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74636, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pars nervosa of hypophysis * pars nervosa of neurohypophysis * pars nervosa of posterior lobe of pituitary gland - * pars nervosa pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_941] - * pars posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000860] - * posterior lobe of neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74636] + * pars nervosa pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_941 ] + * pars posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000860 ] + * posterior lobe of neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74636 ] * posterior lobe-3 - * PNHP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_941[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * posterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000561] - * caudal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000561] - * eminentia medialis (Shantha) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia mediana [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia postinfundibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobe caudalis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000561] - * medial eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402] - * middle lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000561] - * pars nervosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000860] + * PNHP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_941, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * posterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000561 ] + * caudal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000561 ] + * eminentia medialis (Shantha) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia mediana [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia postinfundibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobe caudalis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000561 ] + * medial eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402 ] + * middle lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000561 ] + * pars nervosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000860 ] ## Cross-references @@ -37,9 +37,9 @@ * FMA:74636 * MA:0000860 * NIF_GrossAnatomy:birnlex_941 - * NeuroNames:402 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_941] + * NeuroNames:402 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_941 ] * SCTID:424523008 - * UMLS:C0447640 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_941] + * UMLS:C0447640 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_941 ] * VHOG:0001180 * Wikipedia:Neurohypophysis#cite_note-1 * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003317.md b/md/UBERON/17/UBERON_0003317.md index da8dab9d40..ad858bf6c9 100644 --- a/md/UBERON/17/UBERON_0003317.md +++ b/md/UBERON/17/UBERON_0003317.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003317 * *Label* = odontogenic papilla of incisor - * *Definition* = An odontogenic papilla that is part of a incisor tooth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a incisor tooth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * incisor dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * incisor mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * incisor odontogenic papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth odontogenic papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * odontogenic papilla of incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * incisor dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * incisor mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * incisor odontogenic papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth odontogenic papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * odontogenic papilla of incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [incisor tooth](../../UBERON/98/UBERON_0001098.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003417.md b/md/UBERON/17/UBERON_0003417.md index 568c334d52..a239115eec 100644 --- a/md/UBERON/17/UBERON_0003417.md +++ b/md/UBERON/17/UBERON_0003417.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003417 * *Label* = mesenchyme of soft palate - * *Definition* = Mesenchyme that is part of a soft palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a soft palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * soft palate mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * soft palate mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003517.md b/md/UBERON/17/UBERON_0003517.md index fa18c6615c..371bdaa0da 100644 --- a/md/UBERON/17/UBERON_0003517.md +++ b/md/UBERON/17/UBERON_0003517.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003517 * *Label* = kidney blood vessel - * *Definition* = A blood vessel that is part of a kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003617.md b/md/UBERON/17/UBERON_0003617.md index d278abba04..8044f431dd 100644 --- a/md/UBERON/17/UBERON_0003617.md +++ b/md/UBERON/17/UBERON_0003617.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003617 * *Label* = trachea elastic tissue - * *Definition* = An elastic tissue that is part of a trachea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An elastic tissue that is part of a trachea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cartilaginous trachea elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous trachea elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous trachea textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of vertebrate trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic connective tissue of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of vertebrate trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elastic tissue of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of vertebrate trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus elasticus of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate trachea elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate trachea elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate trachea textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe elastic connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe elastic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe textus connectivus elasticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cartilaginous trachea elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous trachea elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous trachea textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of vertebrate trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic connective tissue of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of vertebrate trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elastic tissue of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of vertebrate trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus elasticus of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate trachea elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate trachea elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate trachea textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe elastic connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe elastic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe textus connectivus elasticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0003917.md b/md/UBERON/17/UBERON_0003917.md index 787dc42765..b421a8824b 100644 --- a/md/UBERON/17/UBERON_0003917.md +++ b/md/UBERON/17/UBERON_0003917.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003917 * *Label* = arthropod fat body - * *Definition* = an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007503] + * *Definition* = an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007503 ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms - * fat body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005066[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fat body sensu invertebrata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0000810] + * fat body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005066, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fat body sensu invertebrata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0000810 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A fatty tissue especially of nearly mature insect larvae that serves as a food reserve[BTO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004017.md b/md/UBERON/17/UBERON_0004017.md index 8b3235f5e8..a2499a0872 100644 --- a/md/UBERON/17/UBERON_0004017.md +++ b/md/UBERON/17/UBERON_0004017.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004017 * *Label* = periocular mesenchyme - * *Definition* = the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004054[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:3709965] + * *Definition* = the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004054, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:3709965 ] * *Comment* = AO notes: Check XAO once it has a definition. Taxon notes: Periocular mesenchyme (PM) is a mesencephalic neural crest derived cell population which as a result of an interaction with the retinal pigment epithelium forms the scleral cartilage of the avian eye[PMID:3709965] ## Synonyms - * periocular mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004089] + * periocular mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004089 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004117.md b/md/UBERON/17/UBERON_0004117.md index 0960f88925..2ff5a45d2f 100644 --- a/md/UBERON/17/UBERON_0004117.md +++ b/md/UBERON/17/UBERON_0004117.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004117 * *Label* = pharyngeal pouch - * *Definition* = embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_pouch_(embryology)] + * *Definition* = embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_pouch_(embryology) ] * *Comment* = AO notes: VHOG and EMAPAA distinguish between pouch endoderm and pouch but we merge those here. Editor notes: consider adding location (precursor) - i.e. internal (endodermal) // The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] ## Synonyms - * branchial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Branchial_pouch] - * visceral pouch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pharyngeal pouches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001203] - * visceral pouches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001203] + * branchial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Branchial_pouch ] + * visceral pouch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pharyngeal pouches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001203 ] + * visceral pouches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001203 ] ## Cross-references @@ -24,7 +24,7 @@ * EMAPA:32752 * SCTID:34674002 * TAO:0001106 - * UMLS:C0231067 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Pouch] + * UMLS:C0231067 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Pouch ] * VHOG:0001203 * Wikipedia:Pharyngeal_pouch_(embryology) * XAO:0000282 @@ -43,7 +43,7 @@ * [endo-epithelium](../../UBERON/11/UBERON_0005911.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal system](../../UBERON/14/UBERON_0008814.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch](../../UBERON/39/UBERON_0002539.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Chordata](../../NCBITaxon/11/NCBITaxon_7711.md) * [develops from](../../RO/02/RO_0002202.md) some [early pharyngeal endoderm](../../UBERON/90/UBERON_0007690.md) @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004217.md b/md/UBERON/17/UBERON_0004217.md index 4df10a930a..877679769f 100644 --- a/md/UBERON/17/UBERON_0004217.md +++ b/md/UBERON/17/UBERON_0004217.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004217 * *Label* = upper arm nerve - * *Definition* = A nerve that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of Proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of arm stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of stylopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb stylopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of Proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of arm stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of stylopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb stylopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004317.md b/md/UBERON/17/UBERON_0004317.md index 9c2657e007..7be05fe3ee 100644 --- a/md/UBERON/17/UBERON_0004317.md +++ b/md/UBERON/17/UBERON_0004317.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004317 * *Label* = distal phalanx of pedal digit 3 - * *Definition* = A distal phalanx that is part of a foot digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a foot digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd toe distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of the 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32629] - * distal phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32629] - * equine 3rd phalanx of hindlimb digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine hindlimb distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * foot digit 3 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third distal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32629] - * hindlimb coffin bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] - * hindlimb medial claw of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * hindlimb medial claw of ruminant hoof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * hindlimb medial ungual phalanx of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * hindlimb pedal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] + * 3rd toe distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of the 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32629 ] + * distal phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32629 ] + * equine 3rd phalanx of hindlimb digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine hindlimb distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * foot digit 3 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third distal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32629 ] + * hindlimb coffin bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] + * hindlimb medial claw of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * hindlimb medial claw of ruminant hoof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * hindlimb medial ungual phalanx of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * hindlimb pedal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004417.md b/md/UBERON/17/UBERON_0004417.md index 4bc1f2f143..8993fd6e1a 100644 --- a/md/UBERON/17/UBERON_0004417.md +++ b/md/UBERON/17/UBERON_0004417.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004417 * *Label* = proximal epiphysis of phalanx of manual digit 1 - * *Definition* = A proximal epiphysis that is part of a manual digit 1 phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a manual digit 1 phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37489] - * base of phalanx of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37489] - * base of phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37489] + * basal epiphysis of phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37489 ] + * base of phalanx of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37489 ] + * base of phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37489 ] * proximal epiphysis of phalanx of manual digit 1 - * proximal epiphysis of phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37489[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * proximal epiphysis of phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37489, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1 phalanx](../../UBERON/20/UBERON_0003620.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004517.md b/md/UBERON/17/UBERON_0004517.md index 3efeae28fa..6d0e588800 100644 --- a/md/UBERON/17/UBERON_0004517.md +++ b/md/UBERON/17/UBERON_0004517.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004517 * *Label* = smooth muscle tissue of respiratory bronchiole - * *Definition* = A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a respiratory bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory bronchiole](../../UBERON/88/UBERON_0002188.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004617.md b/md/UBERON/17/UBERON_0004617.md index 2d58e1874a..a45ac6b93e 100644 --- a/md/UBERON/17/UBERON_0004617.md +++ b/md/UBERON/17/UBERON_0004617.md @@ -7,8 +7,8 @@ ## Synonyms - * L1 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13072] - * first lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13072] + * L1 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13072 ] + * first lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13072 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:13072 * MA:0001428 * SCTID:181841004 - * UMLS:C0223492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:L1_Vertebra] + * UMLS:C0223492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:L1_Vertebra ] * ncithesaurus:L1_Vertebra ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004717.md b/md/UBERON/17/UBERON_0004717.md index b56bf3f12f..7c619dca23 100644 --- a/md/UBERON/17/UBERON_0004717.md +++ b/md/UBERON/17/UBERON_0004717.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004717 * *Label* = Brodmann (1909) area 29 - * *Definition* = Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_29] + * *Definition* = Brodmann area 29, also known as granular retrolimbic area 29 or granular retrosplenial cortex, is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30 (Brodmann-1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_29 ] ## Synonyms - * B09-29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1763] - * Brodmann (1909) area 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1763] - * Brodmann area 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68626] - * Brodmann area 29, granular retrolimbic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1763] - * Brodmann's area 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68626] - * area 29 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68626] - * area 29 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1763] - * area retrolimbica granularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1763] - * B09-29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1763[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * granular retrolimbic area 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003978[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_29] + * B09-29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1763 ] + * Brodmann (1909) area 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1763 ] + * Brodmann area 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68626 ] + * Brodmann area 29, granular retrolimbic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1763 ] + * Brodmann's area 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68626 ] + * area 29 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68626 ] + * area 29 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1763 ] + * area retrolimbica granularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1763 ] + * B09-29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1763, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * granular retrolimbic area 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003978, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_29 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:68626 * NIF_GrossAnatomy:birnlex_1763 * NeuroNames:2104 - * UMLS:C1272490 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1763] + * UMLS:C1272490 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1763 ] * Wikipedia:Brodmann_area_29 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30[BTO:0003978]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004817.md b/md/UBERON/17/UBERON_0004817.md index 33453dfe3f..b6012c45b7 100644 --- a/md/UBERON/17/UBERON_0004817.md +++ b/md/UBERON/17/UBERON_0004817.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004817 * *Label* = lacrimal gland epithelium - * *Definition* = An epithelium that is part of a lacrimal gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lacrimal gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of lacrimal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lacrimal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lacrimal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lacrimal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lacrimal gland](../../UBERON/17/UBERON_0001817.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0004917.md b/md/UBERON/17/UBERON_0004917.md index 8ebba12b8a..c40d966be9 100644 --- a/md/UBERON/17/UBERON_0004917.md +++ b/md/UBERON/17/UBERON_0004917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004917 * *Label* = urethral sphincter - * *Definition* = A sphincter muscle surrounding the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethral_sphincter] + * *Definition* = A sphincter muscle surrounding the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethral_sphincter ] ## Synonyms @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005017.md b/md/UBERON/17/UBERON_0005017.md index c60b410b21..b1150f6873 100644 --- a/md/UBERON/17/UBERON_0005017.md +++ b/md/UBERON/17/UBERON_0005017.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005017 * *Label* = mucosa of lacrimal sac - * *Definition* = A mucosa that is part of a lacrimal sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a lacrimal sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lacrimal sac mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal sac mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal sac mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal sac organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of lacrimal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of lacrimal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of lacrimal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lacrimal sac mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal sac mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal sac mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal sac organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of lacrimal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of lacrimal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of lacrimal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lacrimal sac](../../UBERON/51/UBERON_0001351.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005117.md b/md/UBERON/17/UBERON_0005117.md index 48c84c736c..7593decdbb 100644 --- a/md/UBERON/17/UBERON_0005117.md +++ b/md/UBERON/17/UBERON_0005117.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005117 * *Label* = metanephric distal convoluted tubule - * *Definition* = The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072221] + * *Definition* = The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072221 ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal convoluted tubule](../../UBERON/92/UBERON_0001292.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005217.md b/md/UBERON/17/UBERON_0005217.md index 17580d2ff3..6a679cde28 100644 --- a/md/UBERON/17/UBERON_0005217.md +++ b/md/UBERON/17/UBERON_0005217.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005217 * *Label* = midbrain subarachnoid space - * *Definition* = A subarachnoid space that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subarachnoid space that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * subarachnoid space midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001304] - * subarachnoid space mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001304] + * subarachnoid space midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001304 ] + * subarachnoid space mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001304 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [subarachnoid space](../../UBERON/15/UBERON_0000315.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subarachnoid space that is part of the midbrain. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005317.md b/md/UBERON/17/UBERON_0005317.md index 72137c77b0..3402804529 100644 --- a/md/UBERON/17/UBERON_0005317.md +++ b/md/UBERON/17/UBERON_0005317.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005317 * *Label* = pulmonary artery endothelium - * *Definition* = An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061155] + * *Definition* = An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061155 ] ## Synonyms - * pulmonary artery endothelial tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061155] + * pulmonary artery endothelial tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061155 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary artery](../../UBERON/12/UBERON_0002012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005417.md b/md/UBERON/17/UBERON_0005417.md index 3d0bf17c56..f54b400048 100644 --- a/md/UBERON/17/UBERON_0005417.md +++ b/md/UBERON/17/UBERON_0005417.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005417 * *Label* = forelimb bud - * *Definition* = A limb bud that develops into a forelimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb bud that develops into a forelimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Genes: Tbx5 specifies forelimbs. Wnt2b restricts Fgf10 in chick // In tetrapods, the position of the forelimb is associated with the anterior expression border of Hoxc6 in the paraxial mesoderm (Burke et al., 1995) ## Synonyms * anterior limb bud - * limb bud - forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000065] - * upper limb bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0003198] - * wing bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * limb bud - forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000065 ] + * upper limb bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0003198 ] + * wing bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * arm bud ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [limb bud](../../UBERON/47/UBERON_0004347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005617.md b/md/UBERON/17/UBERON_0005617.md index 5165ff0869..7b264885be 100644 --- a/md/UBERON/17/UBERON_0005617.md +++ b/md/UBERON/17/UBERON_0005617.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005617 * *Label* = mesenteric vein - * *Definition* = Veins which return blood from the intestines; the inferior mesenteric vein empties into the splenic vein, the superior mesenteric vein joins the splenic vein to form the portal vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.231.908.670.385[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesenteric_vein] + * *Definition* = Veins which return blood from the intestines; the inferior mesenteric vein empties into the splenic vein, the superior mesenteric vein joins the splenic vein to form the portal vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.231.908.670.385, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesenteric_vein ] ## Synonyms @@ -17,7 +17,7 @@ * MESH:A07.231.908.670.385 * RETIRED_EHDAA2:0001125 * SCTID:304045008 - * UMLS:C0025473 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesenteric_Vein] + * UMLS:C0025473 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesenteric_Vein ] * Wikipedia:Mesenteric_vein * ncithesaurus:Mesenteric_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0005817.md b/md/UBERON/17/UBERON_0005817.md index 8497d1735f..5a6e0bf59e 100644 --- a/md/UBERON/17/UBERON_0005817.md +++ b/md/UBERON/17/UBERON_0005817.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005817 * *Label* = neuraxis flexure - * *Definition* = An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:Curator] + * *Definition* = An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:Curator ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0006117.md b/md/UBERON/17/UBERON_0006117.md index b18ec8e3b4..7292d93f48 100644 --- a/md/UBERON/17/UBERON_0006117.md +++ b/md/UBERON/17/UBERON_0006117.md @@ -6,20 +6,20 @@ ## Synonyms - * accessory nerve fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_916] - * accessory nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72626] - * accessory nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_916] - * accessory nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72626] - * eleventh cranial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72626] - * fibrae nervi accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:792[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * accessory nerve fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_916 ] + * accessory nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72626 ] + * accessory nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_916 ] + * accessory nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72626 ] + * eleventh cranial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72626 ] + * fibrae nervi accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:792, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:11nf * FMA:72626 * NIF_GrossAnatomy:birnlex_916 - * NeuroNames:792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_916] - * UMLS:C0175549 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_916] + * NeuroNames:792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_916 ] + * UMLS:C0175549 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_916 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0006217.md b/md/UBERON/17/UBERON_0006217.md index 3e11f776ac..dd4b6217cc 100644 --- a/md/UBERON/17/UBERON_0006217.md +++ b/md/UBERON/17/UBERON_0006217.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006217 * *Label* = cloacal membrane - * *Definition* = the membrane that covers the embryonic cloaca, formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm; the urorectal septum joins the cloacal membrane and divides it into an anal membrane and a urogenital membrane; the point where the urorectal septum intersects the cloacal membrane is the future site of the perineal body; proliferation of mesoderm and ectoderm around the cloacal membrane produces primordial tissues of the external genitalia in both sexes: the genital tubercle, genital folds, and genital swellings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011837[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cloacal_membrane] + * *Definition* = the membrane that covers the embryonic cloaca, formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm; the urorectal septum joins the cloacal membrane and divides it into an anal membrane and a urogenital membrane; the point where the urorectal septum intersects the cloacal membrane is the future site of the perineal body; proliferation of mesoderm and ectoderm around the cloacal membrane produces primordial tissues of the external genitalia in both sexes: the genital tubercle, genital folds, and genital swellings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011837, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cloacal_membrane ] ## Synonyms * embryonic cloacal membrane - * membrana cloacalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cloacal_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * membrana cloacalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cloacal_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EHDAA:2933 * EMAPA:16832 * SCTID:308826008 - * UMLS:C0231056 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cloacal_Membrane] + * UMLS:C0231056 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cloacal_Membrane ] * VHOG:0001198 * Wikipedia:Cloacal_membrane * http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A membrane that separates the proctodeum and the hindgut in the early embryo. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.497, see_Kardong_KV][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals, the cloaca exists as an embryonic structure that undergoes septation to become distinct urethral, anal, and genital orifices.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0006517.md b/md/UBERON/17/UBERON_0006517.md index 7d0966263f..077f63a022 100644 --- a/md/UBERON/17/UBERON_0006517.md +++ b/md/UBERON/17/UBERON_0006517.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006517 * *Label* = kidney calyx - * *Definition* = Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A05.810.453.537.503] + * *Definition* = Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A05.810.453.537.503 ] ## Synonyms - * renal calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000369] - * calyx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18676] + * renal calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000369 ] + * calyx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18676 ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0000369 * MESH:A05.810.453.537.503 * SCTID:276832000 - * UMLS:C0022651 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Calyx] + * UMLS:C0022651 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Calyx ] * ncithesaurus:Renal_Calyx ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0006617.md b/md/UBERON/17/UBERON_0006617.md index 0093bfab38..7da0d0f87f 100644 --- a/md/UBERON/17/UBERON_0006617.md +++ b/md/UBERON/17/UBERON_0006617.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006617 * *Label* = left external ear - * *Definition* = An external ear that is in the left side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An external ear that is in the left side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53644] + * left auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53644 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external ear](../../UBERON/91/UBERON_0001691.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0006717.md b/md/UBERON/17/UBERON_0006717.md index 4410880325..5567f07f0a 100644 --- a/md/UBERON/17/UBERON_0006717.md +++ b/md/UBERON/17/UBERON_0006717.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006717 * *Label* = autopodial skeleton - * *Definition* = The collection of all skeletal elements in an autopodium region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in an autopodium region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group ## Synonyms - * autopod skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * autopodial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005019] - * skeletal parts of autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * skeleton of autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005019[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * autopod skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * autopodial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005019 ] + * skeletal parts of autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * skeleton of autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005019, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [autopod region](../../UBERON/70/UBERON_0002470.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Distal section of the limb skeleton, consisting of the anterior autopodium or posterior autopodium.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0007317.md b/md/UBERON/17/UBERON_0007317.md index 3fab805014..507b7a7e2a 100644 --- a/md/UBERON/17/UBERON_0007317.md +++ b/md/UBERON/17/UBERON_0007317.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007317 * *Label* = superficial external pudendal artery - * *Definition* = The superficial external pudendal artery (superficial external pudic artery) arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_external_pudendal_artery] + * *Definition* = The superficial external pudendal artery (superficial external pudic artery) arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_external_pudendal_artery ] * *Comment* = After piercing the femoral sheath and fascia cribrosa, it courses medialward, across the spermatic cord (or round ligament in the female), to be distributed to the integument on the lower part of the abdomen, the penis and scrotum in the male, and the labium majus in the female, anastomosing with branches of the internal pudendal artery. it crosses superficial to the inguinal ligament[WP] ## Synonyms - * arteria pudenda externa superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_external_pudendal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria pudenda externa superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_external_pudendal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0007417.md b/md/UBERON/17/UBERON_0007417.md index bd14b7bc64..ac1f312bc5 100644 --- a/md/UBERON/17/UBERON_0007417.md +++ b/md/UBERON/17/UBERON_0007417.md @@ -6,7 +6,7 @@ ## Synonyms - * neuraxis peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83860] + * neuraxis peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83860 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0007617.md b/md/UBERON/17/UBERON_0007617.md index cf51503b08..5cd09ecc3e 100644 --- a/md/UBERON/17/UBERON_0007617.md +++ b/md/UBERON/17/UBERON_0007617.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007617 * *Label* = synovial cavity of joint - * *Definition* = An anatomical cavity that surrounded_by a synovial joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a synovial joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * articular cavity (synovial joint) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11356] - * cavitas articularis (junctura synovialis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11356] - * cavity of synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11356] + * articular cavity (synovial joint) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11356 ] + * cavitas articularis (junctura synovialis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11356 ] + * cavity of synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11356 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0007717.md b/md/UBERON/17/UBERON_0007717.md index 2d7442a359..a5eb511178 100644 --- a/md/UBERON/17/UBERON_0007717.md +++ b/md/UBERON/17/UBERON_0007717.md @@ -6,7 +6,7 @@ ## Synonyms - * segment part of sacral spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1512] + * segment part of sacral spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1512 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0008617.md b/md/UBERON/17/UBERON_0008617.md index d8b6708395..397f39cbe7 100644 --- a/md/UBERON/17/UBERON_0008617.md +++ b/md/UBERON/17/UBERON_0008617.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008617 * *Label* = innermost intercostal muscle - * *Definition* = The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Innermost_intercostal_muscle] + * *Definition* = The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Innermost_intercostal_muscle ] ## Synonyms - * musculus intercostalis intimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Innermost_intercostal_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus intercostalis intimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Innermost_intercostal_muscle] + * musculus intercostalis intimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Innermost_intercostal_muscle ] + * musculus intercostalis intimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Innermost_intercostal_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0008817.md b/md/UBERON/17/UBERON_0008817.md index 6f666f0818..8e6b34a7bb 100644 --- a/md/UBERON/17/UBERON_0008817.md +++ b/md/UBERON/17/UBERON_0008817.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008817 * *Label* = thymus primordium endoderm - * *Definition* = An endoderm that is part of a thymus primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a thymus primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thymus primordium](../../UBERON/62/UBERON_0005562.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0008917.md b/md/UBERON/17/UBERON_0008917.md index da60815509..43abab25e6 100644 --- a/md/UBERON/17/UBERON_0008917.md +++ b/md/UBERON/17/UBERON_0008917.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008917 * *Label* = ampullary organ - * *Definition* = Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ampullary electroreceptor organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002104] + * ampullary electroreceptor organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002104 ] ## Cross-references @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An electroreceptor consisting of receptor cells sunk into the epidermis or located in an epidermal cavity opening to the surface through a duct and pore. It can detect weak electric currents generated by other animals.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass lateral line receptor organ (AAO:0001001)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0009117.md b/md/UBERON/17/UBERON_0009117.md index c4a2414195..2f9550a574 100644 --- a/md/UBERON/17/UBERON_0009117.md +++ b/md/UBERON/17/UBERON_0009117.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009117 * *Label* = indifferent gonad - * *Definition* = A gonad prior to differentiating into a definitive testis or ovary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medterms.com/script/main/art.asp?articlekey=8981] + * *Definition* = A gonad prior to differentiating into a definitive testis or ovary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medterms.com/script/main/art.asp?articlekey=8981 ] * *Comment* = typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references * EHDAA2:0000716 - * UMLS:C1512703 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Indifferent_Gonad] + * UMLS:C1512703 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Indifferent_Gonad ] * ncithesaurus:Indifferent_Gonad ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0009217.md b/md/UBERON/17/UBERON_0009217.md index ccb7afa004..4a4472f517 100644 --- a/md/UBERON/17/UBERON_0009217.md +++ b/md/UBERON/17/UBERON_0009217.md @@ -6,7 +6,7 @@ ## Synonyms - * 4th pharyngeal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * 4th pharyngeal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -19,8 +19,8 @@ * [pharyngeal membrane](../../UBERON/10/UBERON_0009210.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [4th arch pharyngeal cleft](../../UBERON/75/UBERON_0005875.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal pouch 4](../../UBERON/25/UBERON_0007125.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0009617.md b/md/UBERON/17/UBERON_0009617.md index 1222e1e394..9808d2a899 100644 --- a/md/UBERON/17/UBERON_0009617.md +++ b/md/UBERON/17/UBERON_0009617.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009617 * *Label* = head paraxial mesoderm - * *Definition* = Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21610022] + * *Definition* = Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21610022 ] ## Synonyms - * cephalic paraxial mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * head paraxial mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000736] + * cephalic paraxial mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * head paraxial mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000736 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0009717.md b/md/UBERON/17/UBERON_0009717.md index 355ed2bfb5..4e8887a9a6 100644 --- a/md/UBERON/17/UBERON_0009717.md +++ b/md/UBERON/17/UBERON_0009717.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009717 * *Label* = coronal organ - * *Definition* = Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1002/jez.b.21013] + * *Definition* = Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1002/jez.b.21013 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0009917.md b/md/UBERON/17/UBERON_0009917.md index d544b02ca8..16ffac2b8a 100644 --- a/md/UBERON/17/UBERON_0009917.md +++ b/md/UBERON/17/UBERON_0009917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009917 * *Label* = kidney corticomedullary boundary - * *Definition* = the region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011376] + * *Definition* = the region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011376 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [adjacent to](../../RO/20/RO_0002220.md) some [renal medulla](../../UBERON/62/UBERON_0000362.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0010017.md b/md/UBERON/17/UBERON_0010017.md index 4a58631ab5..c76514bf5f 100644 --- a/md/UBERON/17/UBERON_0010017.md +++ b/md/UBERON/17/UBERON_0010017.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010017 * *Label* = spiral valve of cystic duct - * *Definition* = a series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_valves_of_Heister[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dictionary.reference.com/browse/spiral+valve] + * *Definition* = a series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_valves_of_Heister, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dictionary.reference.com/browse/spiral+valve ] ## Synonyms - * Heister's valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15855] - * plica spiralis (ductus cysticus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15855] - * plica spiralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spiral fold of cystic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15855] + * Heister's valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15855 ] + * plica spiralis (ductus cysticus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15855 ] + * plica spiralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spiral fold of cystic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15855 ] * valve of Heister ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0010317.md b/md/UBERON/17/UBERON_0010317.md index 8e8ed14dfc..788662a662 100644 --- a/md/UBERON/17/UBERON_0010317.md +++ b/md/UBERON/17/UBERON_0010317.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010317 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_0010417.md b/md/UBERON/17/UBERON_0010417.md index 337deb953d..a2b05bef3f 100644 --- a/md/UBERON/17/UBERON_0010417.md +++ b/md/UBERON/17/UBERON_0010417.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010417 * *Label* = lymph node T cell domain - * *Definition* = The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002347] + * *Definition* = The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002347 ] ## Synonyms * T cell zone of lymph node * T zone of lymph node - * lymph node T cell dependent paracortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002347] + * lymph node T cell dependent paracortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002347 ] * lymph node T zone - * lymph node T-cell domain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002347] - * lymph node deep cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002347] + * lymph node T-cell domain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002347 ] + * lymph node deep cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002347 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [T cell domain](../../UBERON/93/UBERON_0010393.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0010517.md b/md/UBERON/17/UBERON_0010517.md index 9d79339cab..6ff0d6bf52 100644 --- a/md/UBERON/17/UBERON_0010517.md +++ b/md/UBERON/17/UBERON_0010517.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010517 * *Label* = cephalic clasper - * *Definition* = A mace-like spiny-headed rod found on the mid-dorsal surface of heads of male Holocephali. Thought to aid in holding the female during copulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chimaera#Description_and_tastes[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://fishbase.org/glossary/Glossary.php?q=tenaculum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.fishbase.org/glossary/Glossary.php?q=cephalic+clasper] + * *Definition* = A mace-like spiny-headed rod found on the mid-dorsal surface of heads of male Holocephali. Thought to aid in holding the female during copulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chimaera#Description_and_tastes, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://fishbase.org/glossary/Glossary.php?q=tenaculum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.fishbase.org/glossary/Glossary.php?q=cephalic+clasper ] ## Synonyms * anterior tenaculum - * head clasper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.fishbase.org/glossary/Glossary.php?q=head+clasper] + * head clasper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.fishbase.org/glossary/Glossary.php?q=head+clasper ] * tenaculum ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [clasper](../../UBERON/16/UBERON_0010516.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011017.md b/md/UBERON/17/UBERON_0011017.md index 9763dfe3ac..53d00eeeec 100644 --- a/md/UBERON/17/UBERON_0011017.md +++ b/md/UBERON/17/UBERON_0011017.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011017 * *Label* = semispinalis muscle - * *Definition* = a transversospinalis muscle of the human body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_muscle] + * *Definition* = a transversospinalis muscle of the human body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_muscle ] ## Synonyms - * semispinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semispinalis_muscle] + * semispinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semispinalis_muscle ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011117.md b/md/UBERON/17/UBERON_0011117.md index 3457d72172..e141100db2 100644 --- a/md/UBERON/17/UBERON_0011117.md +++ b/md/UBERON/17/UBERON_0011117.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011117 * *Label* = superior tibiofibular joint - * *Definition* = The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term 'tibiofibular articulation' is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tibiofibular_joint] + * *Definition* = The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term 'tibiofibular articulation' is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tibiofibular_joint ] ## Synonyms - * proximal tibiofibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35184] - * tibiofibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tibiofibular_joint] - * articulatio tibiofibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tibiofibular_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proximal tibiofibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tibiofibular_joint] - * superior tibiofibular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tibiofibular_joint] + * proximal tibiofibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35184 ] + * tibiofibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tibiofibular_joint ] + * articulatio tibiofibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tibiofibular_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proximal tibiofibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tibiofibular_joint ] + * superior tibiofibular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tibiofibular_joint ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [lateral condyle of femur](../../UBERON/85/UBERON_0009985.md) and [connects](../../ts/core#connects.md) some [proximal epiphysis of fibula](../../UBERON/75/UBERON_0008775.md) and [tibiofibular joint](../../UBERON/12/UBERON_0011112.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011217.md b/md/UBERON/17/UBERON_0011217.md index 30d470f8fd..4d7fcefa00 100644 --- a/md/UBERON/17/UBERON_0011217.md +++ b/md/UBERON/17/UBERON_0011217.md @@ -7,8 +7,8 @@ ## Synonyms * serratus dorsalis - * serratus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13400] - * serratus posterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13400] + * serratus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13400 ] + * serratus posterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13400 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011317.md b/md/UBERON/17/UBERON_0011317.md index bd5965bc38..a32fe7f7da 100644 --- a/md/UBERON/17/UBERON_0011317.md +++ b/md/UBERON/17/UBERON_0011317.md @@ -6,10 +6,10 @@ ## Synonyms - * branch of glossopharyngeal nerve to stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53487] - * nerve to stylopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53487] - * ramus musculi stylopharyngei nervus glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stylopharyngeal branch of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53487] + * branch of glossopharyngeal nerve to stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53487 ] + * nerve to stylopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53487 ] + * ramus musculi stylopharyngei nervus glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stylopharyngeal branch of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53487 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011817.md b/md/UBERON/17/UBERON_0011817.md index c6af5e5bc4..f45a03112e 100644 --- a/md/UBERON/17/UBERON_0011817.md +++ b/md/UBERON/17/UBERON_0011817.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011817 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0011917.md b/md/UBERON/17/UBERON_0011917.md index 18fe2e0369..66fe5b9320 100644 --- a/md/UBERON/17/UBERON_0011917.md +++ b/md/UBERON/17/UBERON_0011917.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011917 * *Label* = thalamic glomerulus - * *Definition* = Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_Subcellular:nlx_subcell_20090504] + * *Definition* = Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_Subcellular:nlx_subcell_20090504 ] ## Synonyms - * thalamic glomeruli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * thalamic glomeruli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural glomerulus](../../UBERON/47/UBERON_0001047.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal plus ventral thalamus](../../UBERON/97/UBERON_0001897.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0012117.md b/md/UBERON/17/UBERON_0012117.md index 6731ac9477..2ee6a23a00 100644 --- a/md/UBERON/17/UBERON_0012117.md +++ b/md/UBERON/17/UBERON_0012117.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012117 * *Label* = lumen of nutrient foramen - * *Definition* = An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * nutrient foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75304] - * nutrient foramina [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * nutrient foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75304 ] + * nutrient foramina [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [nutrient foramen conduit](../../UBERON/16/UBERON_0012116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012117 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0012317.md b/md/UBERON/17/UBERON_0012317.md index 491b80f3a5..e22630529f 100644 --- a/md/UBERON/17/UBERON_0012317.md +++ b/md/UBERON/17/UBERON_0012317.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012317 * *Label* = vagina orifice - * *Definition* = The vaginal orifice is a median slit below and behind the opening of the urethra; its size varies inversely with that of the hymen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_orifice] + * *Definition* = The vaginal orifice is a median slit below and behind the opening of the urethra; its size varies inversely with that of the hymen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_orifice ] ## Synonyms - * orifice of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19984] - * ostium vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * orifice of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19984 ] + * ostium vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] * vaginal opening - * vaginal orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19984] - * introitus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19984[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * introitus of vagina [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * vaginal orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19984 ] + * introitus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19984, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * introitus of vagina [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * vaginal introitus ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012317 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0013217.md b/md/UBERON/17/UBERON_0013217.md index fbec752c1d..0b383d036f 100644 --- a/md/UBERON/17/UBERON_0013217.md +++ b/md/UBERON/17/UBERON_0013217.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013217 * *Label* = zygomatic plate - * *Definition* = In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_plate] + * *Definition* = In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_plate ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013217 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0013417.md b/md/UBERON/17/UBERON_0013417.md index 51b13064cd..c72685e25e 100644 --- a/md/UBERON/17/UBERON_0013417.md +++ b/md/UBERON/17/UBERON_0013417.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013417 * *Label* = epicranium - * *Definition* = The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicranium] + * *Definition* = The Epicranium is the medical term for the collection of structures covering the cranium. It consists of the muscles, aponeurosis, and skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicranium ] * *Comment* = todo - add parts ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013417 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0013517.md b/md/UBERON/17/UBERON_0013517.md index 58a7fa7641..0c6d80817f 100644 --- a/md/UBERON/17/UBERON_0013517.md +++ b/md/UBERON/17/UBERON_0013517.md @@ -6,7 +6,7 @@ ## Synonyms - * coccygeal vertebral cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000260] + * coccygeal vertebral cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000260 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [coccygeal vertebra](../../UBERON/70/UBERON_0006070.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013517 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0013617.md b/md/UBERON/17/UBERON_0013617.md index 9190d8bf00..3f61b76e56 100644 --- a/md/UBERON/17/UBERON_0013617.md +++ b/md/UBERON/17/UBERON_0013617.md @@ -6,8 +6,8 @@ ## Synonyms - * upper deciduous molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84210] - * upper primary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84210] + * upper deciduous molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84210 ] + * upper primary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84210 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) and [primary molar tooth](../../UBERON/16/UBERON_0013616.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0013717.md b/md/UBERON/17/UBERON_0013717.md index d605c3058d..0962f88de5 100644 --- a/md/UBERON/17/UBERON_0013717.md +++ b/md/UBERON/17/UBERON_0013717.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013717 * *Label* = superficial inguinal ring - * *Definition* = The exit of the inguinal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] + * *Definition* = The exit of the inguinal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] ## Synonyms - * cutaneous inguinal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] - * external abdominal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] - * external inguinal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] - * external ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] - * subcutaneous inguinal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_inguinal_ring] + * cutaneous inguinal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] + * external abdominal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] + * external inguinal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] + * external ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] + * subcutaneous inguinal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_inguinal_ring ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_superficial_part_of](../../BSPO/00/BSPO_0001100.md) some [inguinal ligament](../../UBERON/04/UBERON_0006204.md) and [inguinal ring](../../UBERON/74/UBERON_0006674.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The superficial inguinal ring is an anatomical structure in the anterior wall of the human abdomen. It is a triangular opening that forms the exit of the inguinal canal, which houses the ilioinguinal nerve, the genital branch of the genitofemoral nerve, and the spermatic cord (in men) or the round ligament (in women). At the other end of the canal, the deep inguinal ring forms the entrance. It is also called the subcutaneous inguinal ring or external inguinal ring. It is found within the aponeurosis of the external oblique, immediately above the crest of the pubis, 1 centimeter above and lateral to the pubic tubercle. It has medial and lateral crura. It is at the layer of the aponeurosis of the obliquus externus abdominis[Wikipedia:Superficial_inguinal_ring]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0014617.md b/md/UBERON/17/UBERON_0014617.md index 1d12623f1d..5731e4e8ea 100644 --- a/md/UBERON/17/UBERON_0014617.md +++ b/md/UBERON/17/UBERON_0014617.md @@ -6,14 +6,14 @@ ## Synonyms - * ventral nerve root of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * anterior nerve root of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1606] + * ventral nerve root of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * anterior nerve root of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1606 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1606 * SCTID:367882002 - * UMLS:C0228639 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1606] + * UMLS:C0228639 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1606 ] ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014617 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0014717.md b/md/UBERON/17/UBERON_0014717.md index 19cb3f6bc5..ce87a8b94d 100644 --- a/md/UBERON/17/UBERON_0014717.md +++ b/md/UBERON/17/UBERON_0014717.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014717 * *Label* = mucous acinus - * *Definition* = The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = The secretory unit of a mucous gland. The acinar portion is composed of mucous secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mucous gland](../../UBERON/14/UBERON_0000414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014717 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0014917.md b/md/UBERON/17/UBERON_0014917.md index 001b6260f1..b913c25aac 100644 --- a/md/UBERON/17/UBERON_0014917.md +++ b/md/UBERON/17/UBERON_0014917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014917 * *Label* = pouch sphincter - * *Definition* = A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Koala#Description] + * *Definition* = A sphincter muscle that is part of a pouch. The pouch sphincter serves to keep the young from falling out. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Koala#Description ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [marsupial pouch](../../UBERON/18/UBERON_0009118.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014917 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0015017.md b/md/UBERON/17/UBERON_0015017.md index da384b7ebd..1da27b98d4 100644 --- a/md/UBERON/17/UBERON_0015017.md +++ b/md/UBERON/17/UBERON_0015017.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015017 * *Label* = incus endochondral element - * *Definition* = A incus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A incus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * incus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * incus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * incus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * incus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -18,19 +18,22 @@ ## Superclasses + * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [endochondral element](../../UBERON/63/UBERON_0010363.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) ## Equivalencies - * ObjectUnionOf( ) + * [incus bone](../../UBERON/88/UBERON_0001688.md)or[incus cartilage element](../../UBERON/74/UBERON_0007374.md)or[incus pre-cartilage condensation](../../UBERON/48/UBERON_0006248.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_0015117.md b/md/UBERON/17/UBERON_0015117.md new file mode 100644 index 0000000000..e3aa346237 --- /dev/null +++ b/md/UBERON/17/UBERON_0015117.md @@ -0,0 +1,44 @@ + +## Class : lamina terminalis of cerebral hemisphere + + * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015117 + * *Label* = lamina terminalis of cerebral hemisphere + * *Definition* = The remnant of the lamina terminalis in the developed brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * *Comment* = In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] + +## Synonyms + + * lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61975 ] + +## Cross-references + + * EHDAA:3500 + * EHDAA:4498 + * FMA:61975 + * SCTID:361483008 + * VHOG:0001547 + * Wikipedia:Lamina_terminalis + +## Subsets + + +## Superclasses + + * [lamina of cerebral hemisphere](../../UBERON/32/UBERON_0014532.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere white matter](../../UBERON/37/UBERON_0002437.md) + * [transformation_of](../../SIO/57/SIO_000657.md) some [lamina terminalis of neural tube](../../UBERON/78/UBERON_0005078.md) + +## Equivalencies + + +## Other Logical Axioms + + +## Other Annotations + + +## Usage + + +## External Comments + diff --git a/md/UBERON/17/UBERON_1000017.md b/md/UBERON/17/UBERON_1000017.md index 88c0b79882..8933b71122 100644 --- a/md/UBERON/17/UBERON_1000017.md +++ b/md/UBERON/17/UBERON_1000017.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000017 * *Label* = tip of external ear - * *Definition* = Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000017 + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2000517.md b/md/UBERON/17/UBERON_2000517.md index e085cf5cba..a966104f9c 100644 --- a/md/UBERON/17/UBERON_2000517.md +++ b/md/UBERON/17/UBERON_2000517.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2000617.md b/md/UBERON/17/UBERON_2000617.md index 7f94b44b30..03a64c9e22 100644 --- a/md/UBERON/17/UBERON_2000617.md +++ b/md/UBERON/17/UBERON_2000617.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2000717.md b/md/UBERON/17/UBERON_2000717.md index 7bd772ded2..57a5a8cfce 100644 --- a/md/UBERON/17/UBERON_2000717.md +++ b/md/UBERON/17/UBERON_2000717.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000717 * *Label* = apical ectodermal ridge median fin fold - * *Definition* = Apical ectodermal ridge that is part of the median fin fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Apical ectodermal ridge that is part of the median fin fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * apical ectodermal ridge median fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000717] + * apical ectodermal ridge median fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000717 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2000817.md b/md/UBERON/17/UBERON_2000817.md index 3056dcf10a..98420d6a14 100644 --- a/md/UBERON/17/UBERON_2000817.md +++ b/md/UBERON/17/UBERON_2000817.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000817[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000817, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_2000917.md b/md/UBERON/17/UBERON_2000917.md index 5a4a3639ca..ccaa043122 100644 --- a/md/UBERON/17/UBERON_2000917.md +++ b/md/UBERON/17/UBERON_2000917.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000917[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000917, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_2001017.md b/md/UBERON/17/UBERON_2001017.md index 874aea91ef..45a4e44b0f 100644 --- a/md/UBERON/17/UBERON_2001017.md +++ b/md/UBERON/17/UBERON_2001017.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001017 * *Label* = myotome somite 22 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001417.md b/md/UBERON/17/UBERON_2001417.md index 9c91ad44df..abb9f242b2 100644 --- a/md/UBERON/17/UBERON_2001417.md +++ b/md/UBERON/17/UBERON_2001417.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001417 * *Label* = pelvic fin distal radial bone 1 - * *Definition* = pelvic fin distal radial 1 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 1 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pelvic fin distal radial element 1](../../UBERON/17/UBERON_2101417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001517.md b/md/UBERON/17/UBERON_2001517.md index b66c0150cb..94b233f8fe 100644 --- a/md/UBERON/17/UBERON_2001517.md +++ b/md/UBERON/17/UBERON_2001517.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001517 * *Label* = ceratobranchial 2 cartilage - * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001617.md b/md/UBERON/17/UBERON_2001617.md index fccc4f5caf..f9bdcab8a0 100644 --- a/md/UBERON/17/UBERON_2001617.md +++ b/md/UBERON/17/UBERON_2001617.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001617 * *Label* = trunk sensory canal - * *Definition* = Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Pores frequently piercing scales if present; occasionally enclosed in bony ossicles. ## Synonyms - * trunk lateral line canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001617] + * trunk lateral line canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001617 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001717.md b/md/UBERON/17/UBERON_2001717.md index 4df0f97989..918c05d3a3 100644 --- a/md/UBERON/17/UBERON_2001717.md +++ b/md/UBERON/17/UBERON_2001717.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001717 * *Label* = caudal principal ray 5 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001817.md b/md/UBERON/17/UBERON_2001817.md index 057f836faa..b1e58e8939 100644 --- a/md/UBERON/17/UBERON_2001817.md +++ b/md/UBERON/17/UBERON_2001817.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001817 * *Label* = middle nuchal plate - * *Definition* = Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * median nuchal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001817] - * second nuchal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001817] + * median nuchal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001817 ] + * second nuchal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001817 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2001917.md b/md/UBERON/17/UBERON_2001917.md index 1d8c8d7ca5..ffe2735074 100644 --- a/md/UBERON/17/UBERON_2001917.md +++ b/md/UBERON/17/UBERON_2001917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001917 * *Label* = basibranchial 3 element - * *Definition* = Skeletal element that is median and associated with branchial arch 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is median and associated with branchial arch 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2002017.md b/md/UBERON/17/UBERON_2002017.md index 6fba711764..548ce2f5a8 100644 --- a/md/UBERON/17/UBERON_2002017.md +++ b/md/UBERON/17/UBERON_2002017.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002017 * *Label* = anterior limb of ceratobranchial 5 bone - * *Definition* = Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = This term applies to cypriniform fishes. ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2002117.md b/md/UBERON/17/UBERON_2002117.md index 4ae9abf48a..859273b18b 100644 --- a/md/UBERON/17/UBERON_2002117.md +++ b/md/UBERON/17/UBERON_2002117.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002117 * *Label* = ovipositor - * *Definition* = Organ that functions in egg deposition. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Organ that functions in egg deposition. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2002217.md b/md/UBERON/17/UBERON_2002217.md index 0b03b8aadd..c2d820e082 100644 --- a/md/UBERON/17/UBERON_2002217.md +++ b/md/UBERON/17/UBERON_2002217.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [parasphenoid](../../UBERON/45/UBERON_0004745.md) and [core#connects](../../ts/core#connects.md) some [pterosphenoid](../../UBERON/19/UBERON_2000419.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2005017.md b/md/UBERON/17/UBERON_2005017.md index 98615df2f4..f60bdedbdb 100644 --- a/md/UBERON/17/UBERON_2005017.md +++ b/md/UBERON/17/UBERON_2005017.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005017 * *Label* = primordial midbrain channel - * *Definition* = The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PMBC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005017] + * PMBC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005017 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2005117.md b/md/UBERON/17/UBERON_2005117.md index 71ceb5374e..9ded0fd30f 100644 --- a/md/UBERON/17/UBERON_2005117.md +++ b/md/UBERON/17/UBERON_2005117.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005117 * *Label* = anterior lateral line primordium - * *Definition* = A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anterior lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005117[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * anterior lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005117, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2005217.md b/md/UBERON/17/UBERON_2005217.md index a36e5d1b27..8de023a5dd 100644 --- a/md/UBERON/17/UBERON_2005217.md +++ b/md/UBERON/17/UBERON_2005217.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005217 * *Label* = obsolete CaV - * *Definition* = Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-770] + * *Definition* = Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-770 ] ## Synonyms - * caudal ventral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005217] + * caudal ventral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005217 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_2005317.md b/md/UBERON/17/UBERON_2005317.md index 1e9a3b51ac..c06c394309 100644 --- a/md/UBERON/17/UBERON_2005317.md +++ b/md/UBERON/17/UBERON_2005317.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005317 * *Label* = pectoral fin fold - * *Definition* = The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-990210-18] + * *Definition* = The functional webs of the paired fins. They arise as a consequence of apical fold (AER) expansion and of migration of the distal mesenchyme. The fin folds are delimited by a dorsal and a ventral striated epidermis. The cells of the epidermal basal stratum are positioned on a basement membrane. Directly beneath the basement membrane of each side there is an array of actinotrichs, fibers of the extracellular matrix which act as supportive elements of the larval fin folds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-990210-18 ] ## Synonyms - * pectoral fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005317] + * pectoral fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005317 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2101417.md b/md/UBERON/17/UBERON_2101417.md index ae053e43b7..9d7cb1df1f 100644 --- a/md/UBERON/17/UBERON_2101417.md +++ b/md/UBERON/17/UBERON_2101417.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_2201417.md b/md/UBERON/17/UBERON_2201417.md index cb6accb9b7..fe97a2e42f 100644 --- a/md/UBERON/17/UBERON_2201417.md +++ b/md/UBERON/17/UBERON_2201417.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201417 * *Label* = pelvic fin distal radial cartilage 1 - * *Definition* = pelvic fin distal radial 1 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pelvic fin distal radial 1 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pelvic fin distal radial element 1](../../UBERON/17/UBERON_2101417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3000017.md b/md/UBERON/17/UBERON_3000017.md index 9d54fb58a9..3702130173 100644 --- a/md/UBERON/17/UBERON_3000017.md +++ b/md/UBERON/17/UBERON_3000017.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3000117.md b/md/UBERON/17/UBERON_3000117.md index 762bf2cfb0..113b4068fe 100644 --- a/md/UBERON/17/UBERON_3000117.md +++ b/md/UBERON/17/UBERON_3000117.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000117 * *Label* = crista subnasalis - * *Definition* = Ventral crest of the paries nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ventral crest of the paries nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * subnasal crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000117] + * subnasal crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000117 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3000717.md b/md/UBERON/17/UBERON_3000717.md index 895a0b6485..2365930766 100644 --- a/md/UBERON/17/UBERON_3000717.md +++ b/md/UBERON/17/UBERON_3000717.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000717 * *Label* = amphicoelous - * *Definition* = Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Ectochordal, biconcave or terminally flat vertebral centrum. This design seems to allow limited motion in most directions. An intervertebral body (which may or may not be independent from the adjacent centra) fills the cavity between successive centra. The intervertebral body usually is formed by soft material that may be derived, at least in part, from the embryonic notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3000817.md b/md/UBERON/17/UBERON_3000817.md index f6c952893c..ee0e651292 100644 --- a/md/UBERON/17/UBERON_3000817.md +++ b/md/UBERON/17/UBERON_3000817.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000817 * *Label* = margo posterior - * *Definition* = Posterior margin of the coracoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior margin of the coracoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3000917.md b/md/UBERON/17/UBERON_3000917.md index 14f4b6e498..1263e34c5d 100644 --- a/md/UBERON/17/UBERON_3000917.md +++ b/md/UBERON/17/UBERON_3000917.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000917 * *Label* = apophysis distalis of tibiale fibulare - * *Definition* = Swelling on the extensor surface of the distal compound head of the tibiale and fibulare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Swelling on the extensor surface of the distal compound head of the tibiale and fibulare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3010117.md b/md/UBERON/17/UBERON_3010117.md index 245031bea0..7feeecef11 100644 --- a/md/UBERON/17/UBERON_3010117.md +++ b/md/UBERON/17/UBERON_3010117.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010117 * *Label* = musculus obliquus inferior - * *Definition* = Cranial nerve III innverated; ventral in the obliquus group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cranial nerve III innverated; ventral in the obliquus group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3010217.md b/md/UBERON/17/UBERON_3010217.md index cb0311046b..1a7219bfe8 100644 --- a/md/UBERON/17/UBERON_3010217.md +++ b/md/UBERON/17/UBERON_3010217.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010217 * *Label* = carotid - * *Definition* = Either of two arteries which carry blood to the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Either of two arteries which carry blood to the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3010317.md b/md/UBERON/17/UBERON_3010317.md index 583d6847cb..9e102f4ab0 100644 --- a/md/UBERON/17/UBERON_3010317.md +++ b/md/UBERON/17/UBERON_3010317.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010317 * *Label* = obsolete pigment cell - * *Definition* = Cell type that contains a deposition of coloring matter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cell type that contains a deposition of coloring matter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms - * chromatophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010317] + * chromatophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010317 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000147 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_3010417.md b/md/UBERON/17/UBERON_3010417.md index 4ce63fcdf4..41cf1f673a 100644 --- a/md/UBERON/17/UBERON_3010417.md +++ b/md/UBERON/17/UBERON_3010417.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3010517.md b/md/UBERON/17/UBERON_3010517.md index 648eb0e897..b857f2dadc 100644 --- a/md/UBERON/17/UBERON_3010517.md +++ b/md/UBERON/17/UBERON_3010517.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010517 * *Label* = ventral abdominal vein - * *Definition* = A vein formed by the combination of veins in the pelvic region which collects blood from the liver, stomach, intestines, and gall bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A vein formed by the combination of veins in the pelvic region which collects blood from the liver, stomach, intestines, and gall bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_3010717.md b/md/UBERON/17/UBERON_3010717.md index 40b60656bb..11df7d9fde 100644 --- a/md/UBERON/17/UBERON_3010717.md +++ b/md/UBERON/17/UBERON_3010717.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_4000117.md b/md/UBERON/17/UBERON_4000117.md index af3ff72f81..a9b6fcbcaa 100644 --- a/md/UBERON/17/UBERON_4000117.md +++ b/md/UBERON/17/UBERON_4000117.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000117 * *Label* = obsolete non-terminally differentiated osteoblast - * *Definition* = Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0001040 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_4200017.md b/md/UBERON/17/UBERON_4200017.md index c70efc729c..fea3ee0d11 100644 --- a/md/UBERON/17/UBERON_4200017.md +++ b/md/UBERON/17/UBERON_4200017.md @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/17/UBERON_4200117.md b/md/UBERON/17/UBERON_4200117.md index f606fa5cd9..cc2472e114 100644 --- a/md/UBERON/17/UBERON_4200117.md +++ b/md/UBERON/17/UBERON_4200117.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/17/UBERON_4300017.md b/md/UBERON/17/UBERON_4300017.md index 98d870a54c..d9986b18cc 100644 --- a/md/UBERON/17/UBERON_4300017.md +++ b/md/UBERON/17/UBERON_4300017.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0000018.md b/md/UBERON/18/UBERON_0000018.md index ecafbf37c9..1a6e542e07 100644 --- a/md/UBERON/18/UBERON_0000018.md +++ b/md/UBERON/18/UBERON_0000018.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000018 * *Label* = compound eye - * *Definition* = A light sensing organ composed of ommatidia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Compound_eye] + * *Definition* = A light sensing organ composed of ommatidia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Compound_eye ] ## Synonyms - * Facettenauge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001921] - * Komplexauge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001921] + * Facettenauge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001921 ] + * Komplexauge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001921 ] * adult compound eye * insect eye - * zusammengesetztes Auge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001921] + * zusammengesetztes Auge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001921 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0000118.md b/md/UBERON/18/UBERON_0000118.md index 32e2561bfc..c6108e265c 100644 --- a/md/UBERON/18/UBERON_0000118.md +++ b/md/UBERON/18/UBERON_0000118.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000118 * *Label* = lung bud - * *Definition* = Structure derived from foregut that becomes a lung[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060431[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Respiratory_bud] + * *Definition* = Structure derived from foregut that becomes a lung[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060431, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Respiratory_bud ] * *Comment* = Editors note: clarify successors - include bronchi? ## Synonyms - * gemma pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lung_buds[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gemma respiratoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lung_buds[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lung bud [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * primary lung bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060572] - * respiratory diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lung_buds] + * gemma pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lung_buds, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gemma respiratoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lung_buds, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lung bud [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * primary lung bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060572 ] + * respiratory diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lung_buds ] ## Cross-references * BTO:0001643 * EHDAA2:0004089 * SCTID:361427007 - * UMLS:C1514420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Bronchial_Bud] - * UMLS:C1514897 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_Diverticulum] + * UMLS:C1514420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Bronchial_Bud ] + * UMLS:C1514897 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_Diverticulum ] * Wikipedia:Respiratory_bud * http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png * ncithesaurus:Primary_Bronchial_Bud @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0000218.md b/md/UBERON/18/UBERON_0000218.md index 3cfaecf093..087eff0819 100644 --- a/md/UBERON/18/UBERON_0000218.md +++ b/md/UBERON/18/UBERON_0000218.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000218 * *Label* = vertebral arch of axis - * *Definition* = A neural arch that is part of a vertebral bone 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural arch that is part of a vertebral bone 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural arch](../../UBERON/61/UBERON_0003861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 2](../../UBERON/93/UBERON_0001093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0000418.md b/md/UBERON/18/UBERON_0000418.md index d4aaa4e1c4..fa77c141f0 100644 --- a/md/UBERON/18/UBERON_0000418.md +++ b/md/UBERON/18/UBERON_0000418.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000418 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_0000918.md b/md/UBERON/18/UBERON_0000918.md index 7bdafaa19a..38fff10826 100644 --- a/md/UBERON/18/UBERON_0000918.md +++ b/md/UBERON/18/UBERON_0000918.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000918 * *Label* = obsolete yolk - * *Definition* = The nutritive substance contained in the egg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg] + * *Definition* = The nutritive substance contained in the egg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg ] ## Synonyms @@ -35,9 +35,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0007378 * *[consider](../../er/oboInOwl#consider.md)* = XAO:0000281 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000084 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000918 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_0001018.md b/md/UBERON/18/UBERON_0001018.md index 380f6583d4..3463ab3ada 100644 --- a/md/UBERON/18/UBERON_0001018.md +++ b/md/UBERON/18/UBERON_0001018.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001018 * *Label* = axon tract - * *Definition* = A group of axons linking two or more neuropils and having a common origin, termination[FBbt]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = A group of axons linking two or more neuropils and having a common origin, termination[FBbt]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = WP says this is the analog of peripheral nerves in CNS. ## Synonyms * axonal tract - * neuraxis tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83847] - * tract of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83847] - * Nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1649] + * neuraxis tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83847 ] + * tract of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83847 ] + * Nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1649 ] * nerve tract * tract @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = White matter structure of CNS that contains axons that arise predominantly in one central nervous system part and terminate in another. Tracts are generally named by their region or origin followed by their region of primary termination, e.g., mammillothalamic tract contains axons that arise from neurons in the mammillary bodies and terminate in the thalamus. (CUMBO) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001118.md b/md/UBERON/18/UBERON_0001118.md index c23b3b05aa..96485408d8 100644 --- a/md/UBERON/18/UBERON_0001118.md +++ b/md/UBERON/18/UBERON_0001118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001118 * *Label* = lobe of thyroid gland - * *Definition* = The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasci, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lobes_of_thyroid_gland] + * *Definition* = The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasci, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lobes_of_thyroid_gland ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,7 +11,7 @@ * lobus (glandula thyroidea) * thyroid gland lobe * thyroid lobe - * lobuli glandulae thyroideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lobes_of_thyroid_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobuli glandulae thyroideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lobes_of_thyroid_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:13367 * MA:0000131 * SCTID:245537001 - * UMLS:C0447647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Gland_Lobe] + * UMLS:C0447647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Gland_Lobe ] * VHOG:0000732 * Wikipedia:Lobes_of_thyroid_gland * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001218.md b/md/UBERON/18/UBERON_0001218.md index d4ac2c6077..0d420f3718 100644 --- a/md/UBERON/18/UBERON_0001218.md +++ b/md/UBERON/18/UBERON_0001218.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001218 * *Label* = middle colic vein - * *Definition* = The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_colic_vein] + * *Definition* = The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_colic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * vena colica media (intermedia) - * vena colica media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_colic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena colica media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_colic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001318.md b/md/UBERON/18/UBERON_0001318.md index 70f934473f..447e8a22bb 100644 --- a/md/UBERON/18/UBERON_0001318.md +++ b/md/UBERON/18/UBERON_0001318.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001418.md b/md/UBERON/18/UBERON_0001418.md index b612b4826e..8e7ed4fb93 100644 --- a/md/UBERON/18/UBERON_0001418.md +++ b/md/UBERON/18/UBERON_0001418.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001418 * *Label* = skin of thorax - * *Definition* = A zone of skin that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * thoracic skin * thorax skin - * thorax zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thorax zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * upper body skin ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001518.md b/md/UBERON/18/UBERON_0001518.md index 3935101737..ce416f1aea 100644 --- a/md/UBERON/18/UBERON_0001518.md +++ b/md/UBERON/18/UBERON_0001518.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001518 * *Label* = skin of wrist - * *Definition* = A zone of skin that is part of a wrist [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a wrist [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * carpal region zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * wrist skin - * wrist zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * wrist zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:38280 * MA:0000638 * SCTID:181540008 - * UMLS:C0222223 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Wrist_Skin] + * UMLS:C0222223 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Wrist_Skin ] * ncithesaurus:Wrist_Skin ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001618.md b/md/UBERON/18/UBERON_0001618.md index a477b972ee..b4a2cc0a19 100644 --- a/md/UBERON/18/UBERON_0001618.md +++ b/md/UBERON/18/UBERON_0001618.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001618 * *Label* = buccal artery - * *Definition* = The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_artery] + * *Definition* = The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria buccalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria buccinatoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria buccalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria buccinatoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49754 * MA:0001924 * SCTID:148066005 - * UMLS:C0226151 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Buccal_Artery] + * UMLS:C0226151 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Buccal_Artery ] * Wikipedia:Buccal_artery * http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001718.md b/md/UBERON/18/UBERON_0001718.md index 3372343809..c79d8930d1 100644 --- a/md/UBERON/18/UBERON_0001718.md +++ b/md/UBERON/18/UBERON_0001718.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001718 * *Label* = mesencephalic nucleus of trigeminal nerve - * *Definition* = The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] + * *Definition* = The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve ] * *Comment* = Development notes: develops from NC in some species[UBERONREF:0000002] Not of NC origin[doi:10.1002/dvdy.1197]. AO notes: part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary[PMID:11747082] ## Synonyms * mesencephalic trigeminal V nucleus - * mesencephalic trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021739] + * mesencephalic trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021739 ] * nucleus of mesencephalic root of v - * trigeminal V mesencephalic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001057] + * trigeminal V mesencephalic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001057 ] * trigeminal mesencephalic nucleus * trigeminal nerve mesencepahlic nucleus - * Me5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1010[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Me5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1010] - * mesencephalic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] - * Mesencephalic nucleus of the trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MEV] - * mesencephalic nucleus of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:558] - * midbrain trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:558] - * nucleus mesencephalicus nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:558[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus mesencephalicus nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tractus mesencephalici nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:558[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tractus mesencephalicus nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:558[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Me5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1010, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Me5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1010 ] + * mesencephalic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve ] + * Mesencephalic nucleus of the trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MEV ] + * mesencephalic nucleus of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:558 ] + * midbrain trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:558 ] + * nucleus mesencephalicus nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:558, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus mesencephalicus nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tractus mesencephalici nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:558, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tractus mesencephalicus nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:558, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,10 +34,10 @@ * FMA:54568 * MA:0001057 * NIF_GrossAnatomy:birnlex_1010 - * NeuroNames:558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1010] + * NeuroNames:558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1010 ] * SCTID:369032001 * TAO:0000312 - * UMLS:C0228702 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1010] + * UMLS:C0228702 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1010 ] * VHOG:0001354 * Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve * ZFA:0000312 @@ -66,8 +66,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001818.md b/md/UBERON/18/UBERON_0001818.md index 7671392b79..5c835b28a2 100644 --- a/md/UBERON/18/UBERON_0001818.md +++ b/md/UBERON/18/UBERON_0001818.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001818 * *Label* = tarsal gland - * *Definition* = The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meibomian_gland] + * *Definition* = The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meibomian_gland ] ## Synonyms @@ -11,7 +11,7 @@ * gland of Meibom * glandula tarsales * palpebral gland - * tarsoconjunctival gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004165] + * tarsoconjunctival gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004165 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0001249 * MESH:A09.371.337.614 * SCTID:280585003 - * UMLS:C0025181 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Meibomian_Gland] + * UMLS:C0025181 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Meibomian_Gland ] * Wikipedia:Meibomian_gland * http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/200px-Gray1205.png @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [eyelid tarsus](../../UBERON/72/UBERON_0004772.md) and [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0001918.md b/md/UBERON/18/UBERON_0001918.md index 2fb5a75bc1..ef10c66205 100644 --- a/md/UBERON/18/UBERON_0001918.md +++ b/md/UBERON/18/UBERON_0001918.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001918 * *Label* = endothelium of venule - * *Definition* = An endothelium that is part of a venule [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a venule [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:62117 * MA:0000716 - * UMLS:C1179026 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venule_Endothelium] + * UMLS:C1179026 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venule_Endothelium ] * ncithesaurus:Venule_Endothelium ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [venule](../../UBERON/79/UBERON_0001979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002018.md b/md/UBERON/18/UBERON_0002018.md index 87b8e0c6f8..3c63d90fbc 100644 --- a/md/UBERON/18/UBERON_0002018.md +++ b/md/UBERON/18/UBERON_0002018.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002018 * *Label* = synovial membrane of synovial joint - * *Definition* = Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_membrane] + * *Definition* = Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_membrane ] ## Synonyms - * membrana synovialis capsulae articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stratum synoviale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66762[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * synovial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66762] - * synovial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000181] - * synovium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001823[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001282] - * synovial layer of articular capsule of synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9865] - * synovial membrane of articular capsule of synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9865] - * synovium of articular capsule of synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9865] + * membrana synovialis capsulae articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stratum synoviale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66762, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * synovial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66762 ] + * synovial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000181 ] + * synovium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001823, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001282 ] + * synovial layer of articular capsule of synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9865 ] + * synovial membrane of articular capsule of synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9865 ] + * synovium of articular capsule of synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9865 ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0000114 * MESH:A02.835.583.443.800 * SCTID:361828005 - * UMLS:C0039099 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Synovial_Membrane] + * UMLS:C0039099 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Synovial_Membrane ] * VHOG:0001282 * Wikipedia:Synovial_membrane * galen:SynovialMembrane @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetically, synovium is one of the newer attributes of the vertebrate locomotor apparatus. The first synovial joints developed in the piscine jaw of ancestors of modern lungfish by an evolutionary process that modified preexisting fibrous and cartilaginous joints, which were the predominant articulation of the early sea- and land-dwelling vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002118.md b/md/UBERON/18/UBERON_0002118.md index 526a9599e8..6158f81230 100644 --- a/md/UBERON/18/UBERON_0002118.md +++ b/md/UBERON/18/UBERON_0002118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002118 * *Label* = right ovary - * *Definition* = An ovary that is part of a right side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ovary that is part of a right side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:7213 * MA:0001705 * SCTID:280123002 - * UMLS:C0227873 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Ovary] + * UMLS:C0227873 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Ovary ] * ncithesaurus:Right_Ovary ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [female gonad](../../UBERON/92/UBERON_0000992.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002218.md b/md/UBERON/18/UBERON_0002218.md index c0efeacaf1..ce163caf14 100644 --- a/md/UBERON/18/UBERON_0002218.md +++ b/md/UBERON/18/UBERON_0002218.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002218 * *Label* = tympanic ring - * *Definition* = a C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000030[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469] + * *Definition* = a C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000030, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469 ] * *Comment* = AO notes: in FMA, the tympanic ring is an anatomical line. Howevever PMID:11237469 states: "the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane". Taxon notes: check amphibians - in AAO "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane". Gene notes: Gsc and Prx1 are essential for tympanic ring development ## Synonyms - * ectotympanic ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ectotympanic_ring] - * os tympanicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19197] + * ectotympanic ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ectotympanic_ring ] + * os tympanicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19197 ] * tympanic annulus * tympanic anulus * tympanic membrane annulus @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of plectral apparatus (AAO:0000443)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002318.md b/md/UBERON/18/UBERON_0002318.md index e7fdfbffa9..22fa158eda 100644 --- a/md/UBERON/18/UBERON_0002318.md +++ b/md/UBERON/18/UBERON_0002318.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002318 * *Label* = white matter of spinal cord - * *Definition* = the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008027] + * *Definition* = the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008027 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * spinal cord white matter - * spinal cord white matter of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord white substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * white matter of neuraxis of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * white substance of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * spinal cord white matter of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord white substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * white matter of neuraxis of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * white substance of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:83945 * MA:0000910 * SCTID:279436006 - * UMLS:C0458457 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:White_Matter_of_the_Spinal_Cord] + * UMLS:C0458457 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:White_Matter_of_the_Spinal_Cord ] * ncithesaurus:White_Matter_of_the_Spinal_Cord ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002418.md b/md/UBERON/18/UBERON_0002418.md index fa62ed64e8..c043428b97 100644 --- a/md/UBERON/18/UBERON_0002418.md +++ b/md/UBERON/18/UBERON_0002418.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002418 * *Label* = cartilage tissue - * *Definition* = Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000040[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834] + * *Definition* = Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000040, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834 ] * *Comment* = Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W] ## Synonyms - * cartilage tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37377] + * cartilage tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37377 ] * cartilaginous tissue - * chondrogenic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000040] + * chondrogenic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000040 ] * cartilage - * cartilages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001207] + * cartilages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001207 ] ## Cross-references @@ -32,7 +32,7 @@ * OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA * SCTID:309312004 * TAO:0001501 - * UMLS:C0007301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cartilage] + * UMLS:C0007301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cartilage ] * VHOG:0001207 * VSAO:0000040 * Wikipedia:Cartilage @@ -69,8 +69,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetic analysis suggests that cartilage arose independently in cnidarians, hemichordates, vertebrates, arthropods, annelids, brachiopods, and molluscs - or a common ancestor of brachiopods and molluscs (...). Analyses of cartilage as a tissue and of the development of invertebrate cartilages are consistent with homology between invertebrate and vertebrate cartilage. From the discussion above, it will be clear that understanding genetic changes underlying cartilage evolution is key to determining whether the multiple origins of cartilage represent parallel evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002518.md b/md/UBERON/18/UBERON_0002518.md index 2857287e13..c806789688 100644 --- a/md/UBERON/18/UBERON_0002518.md +++ b/md/UBERON/18/UBERON_0002518.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002518 * *Label* = otolith organ - * *Definition* = saccule or utricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otolith_organ] + * *Definition* = saccule or utricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otolith_organ ] * *Comment* = Editor notes: Representation of utricle, sacule and otoliths in correspondence to other ontologies may require review. In EHDAA2, saccule and utricle are epithelia ## Synonyms - * otolith organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000559] - * saccule and utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.909.625] - * utricle and saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.909.625] + * otolith organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000559 ] + * saccule and utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.909.625 ] + * utricle and saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.909.625 ] ## Cross-references @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, as in other vertebrates, the vestibular end-organs are divided into a gravity receptor system, with three subdivisions and an angular acceleration receptor system. The gravity receptor system on each side consists of utricular, saccular, and lagenar maculae, each covered by an otolith (reference 1); (...)considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002618.md b/md/UBERON/18/UBERON_0002618.md index 7271b30aaa..02b5b6ccf0 100644 --- a/md/UBERON/18/UBERON_0002618.md +++ b/md/UBERON/18/UBERON_0002618.md @@ -6,14 +6,14 @@ ## Synonyms - * central part of trochlear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71116] - * trochlear nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71116] - * trochlear nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71116] - * trochlear nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71116] - * 4nf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1172[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fibrae nervi trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trochlear nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:4n] - * trochlear nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:4n] + * central part of trochlear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71116 ] + * trochlear nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71116 ] + * trochlear nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71116 ] + * trochlear nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71116 ] + * 4nf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1172, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fibrae nervi trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trochlear nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:4n ] + * trochlear nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:4n ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:71116 * NIF_GrossAnatomy:birnlex_1172 * NIF_GrossAnatomy:birnlex_1341 - * NeuroNames:486 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1172] - * UMLS:C0175374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1172] + * NeuroNames:486 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1172 ] + * UMLS:C0175374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1172 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002718.md b/md/UBERON/18/UBERON_0002718.md index 59b74e6776..8b01feb201 100644 --- a/md/UBERON/18/UBERON_0002718.md +++ b/md/UBERON/18/UBERON_0002718.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002718 * *Label* = solitary tract - * *Definition* = The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Solitary_tract] + * *Definition* = The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Solitary_tract ] ## Synonyms * respiratory bundle of Gierke - * fasciculus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:785[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * solitary tract (Stilling) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:785] - * tractus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:785[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus solitarius medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Solitary_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fasciculus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:785, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * solitary tract (Stilling) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:785 ] + * tractus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:785, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus solitarius medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Solitary_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,8 +20,8 @@ * BM:Me-ST * FMA:72619 * NIF_GrossAnatomy:birnlex_1483 - * NeuroNames:785 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1483] - * UMLS:C0175559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1483] + * NeuroNames:785 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1483 ] + * UMLS:C0175559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1483 ] * Wikipedia:Solitary_tract * http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002818.md b/md/UBERON/18/UBERON_0002818.md index e5dbfe8333..6691a70841 100644 --- a/md/UBERON/18/UBERON_0002818.md +++ b/md/UBERON/18/UBERON_0002818.md @@ -6,11 +6,11 @@ ## Synonyms - * dorsolateral fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83730] - * posterolateral fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83730] - * prenodular fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83730] - * prenodular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83730] - * uvulonodular fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83730] + * dorsolateral fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83730 ] + * posterolateral fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83730 ] + * prenodular fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83730 ] + * prenodular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83730 ] + * uvulonodular fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83730 ] * posterolateral fissure ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0002918.md b/md/UBERON/18/UBERON_0002918.md index 2dce31188d..8e767c4658 100644 --- a/md/UBERON/18/UBERON_0002918.md +++ b/md/UBERON/18/UBERON_0002918.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002918 * *Label* = medial parabrachial nucleus - * *Definition* = The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_parabrachial_nucleus] + * *Definition* = The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_parabrachial_nucleus ] ## Synonyms - * nucleus parabrachialis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_parabrachial_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parabrachial nucleus, medial division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:587] - * parabrachial nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:587] + * nucleus parabrachialis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_parabrachial_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parabrachial nucleus, medial division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:587 ] + * parabrachial nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:587 ] ## Cross-references * BAMS:MPB * FMA:72480 * NIF_GrossAnatomy:birnlex_4038 - * NeuroNames:587 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4038] - * UMLS:C0175446 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4038] + * NeuroNames:587 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4038 ] + * UMLS:C0175446 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4038 ] * Wikipedia:Medial_parabrachial_nucleus ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003018.md b/md/UBERON/18/UBERON_0003018.md index d85fc6ef96..0590891e23 100644 --- a/md/UBERON/18/UBERON_0003018.md +++ b/md/UBERON/18/UBERON_0003018.md @@ -6,25 +6,25 @@ ## Synonyms - * gustatory nucleus (thalamus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_917] - * gustatory thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207] - * nucleus ventralis posterior medialis thalami, pars parvicellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_917] - * pars parvicellularis nuclei ventralis posteromedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvicellular part of ventral posteromedial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207] - * ventral posteromedial nucleus of thalamus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207] - * ventral posteromedial nucleus, parvocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207] - * ventral posteromedial thalamic nucleus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62207] - * ventroposteromedial nucleus of the thalamus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_917] - * VPMPC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_917[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis posterior medialis, pars parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvicellular part of the ventral posteromedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349] - * thalamic gustatory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349] - * thalamic gustatory relay [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349] - * thalamic taste relay [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349] - * ventral posteromedial nucleus of the thalamus parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:349] - * ventral posteromedial nucleus of the thalamus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPMpc] - * ventroposterior medial thalamic nucleus, parvocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPMPC] - * ventroposteromedial nucleus of the thalamus parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPMpc] + * gustatory nucleus (thalamus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_917 ] + * gustatory thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207 ] + * nucleus ventralis posterior medialis thalami, pars parvicellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_917 ] + * pars parvicellularis nuclei ventralis posteromedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvicellular part of ventral posteromedial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207 ] + * ventral posteromedial nucleus of thalamus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207 ] + * ventral posteromedial nucleus, parvocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207 ] + * ventral posteromedial thalamic nucleus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62207 ] + * ventroposteromedial nucleus of the thalamus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_917 ] + * VPMPC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_917, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis posterior medialis, pars parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvicellular part of the ventral posteromedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349 ] + * thalamic gustatory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349 ] + * thalamic gustatory relay [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349 ] + * thalamic taste relay [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349 ] + * ventral posteromedial nucleus of the thalamus parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:349 ] + * ventral posteromedial nucleus of the thalamus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPMpc ] + * ventroposterior medial thalamic nucleus, parvocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPMPC ] + * ventroposteromedial nucleus of the thalamus parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPMpc ] ## Cross-references @@ -34,8 +34,8 @@ * BAMS:VPMpc * FMA:62207 * NIF_GrossAnatomy:birnlex_917 - * NeuroNames:349 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_917] - * UMLS:C0175290 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_917] + * NeuroNames:349 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_917 ] + * UMLS:C0175290 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_917 ] ## Subsets @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003118.md b/md/UBERON/18/UBERON_0003118.md index fb23fb1fe9..f948b13ac1 100644 --- a/md/UBERON/18/UBERON_0003118.md +++ b/md/UBERON/18/UBERON_0003118.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003118 * *Label* = aortic arch 1 - * *Definition* = the vessels formed within the first pair of branchial arches in embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010355] + * *Definition* = the vessels formed within the first pair of branchial arches in embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010355 ] * *Comment* = ZFA: The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas. // Disappears early in development in tetrapods ## Synonyms - * 1st arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16685] - * AA1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005005] - * first aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000342] + * 1st arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16685 ] + * AA1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005005 ] + * first aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000342 ] * first branchial arch artery - * mandibular aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005005] - * 1st aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16685] - * 1st branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16685] - * 1st pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16685] + * mandibular aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005005 ] + * 1st aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16685 ] + * 1st branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16685 ] + * 1st pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16685 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004371 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003218.md b/md/UBERON/18/UBERON_0003218.md index b87bd58aef..441a1077e3 100644 --- a/md/UBERON/18/UBERON_0003218.md +++ b/md/UBERON/18/UBERON_0003218.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003218 * *Label* = ovary septum - * *Definition* = Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0080126] + * *Definition* = Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0080126 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [septum](../../UBERON/37/UBERON_0003037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003318.md b/md/UBERON/18/UBERON_0003318.md index 6ffc2f52ba..e6db043678 100644 --- a/md/UBERON/18/UBERON_0003318.md +++ b/md/UBERON/18/UBERON_0003318.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003318 * *Label* = mesenchyme of elbow - * *Definition* = Mesenchyme that is part of a elbow [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a elbow [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cubital region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elbow mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cubital region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elbow mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [elbow](../../UBERON/61/UBERON_0001461.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003418.md b/md/UBERON/18/UBERON_0003418.md index 12167cf16e..f7633413f6 100644 --- a/md/UBERON/18/UBERON_0003418.md +++ b/md/UBERON/18/UBERON_0003418.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003418 * *Label* = mesenchyme of submandibular gland - * *Definition* = Mesenchyme that is part of a submandibular gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a submandibular gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * submandibular gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * submandibular gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submandibular gland](../../UBERON/36/UBERON_0001736.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003518.md b/md/UBERON/18/UBERON_0003518.md index 3a883562bd..6e389458c6 100644 --- a/md/UBERON/18/UBERON_0003518.md +++ b/md/UBERON/18/UBERON_0003518.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003518 * *Label* = main bronchus blood vessel - * *Definition* = A blood vessel that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003618.md b/md/UBERON/18/UBERON_0003618.md index 6504eec758..3f861b16c6 100644 --- a/md/UBERON/18/UBERON_0003618.md +++ b/md/UBERON/18/UBERON_0003618.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003618 * *Label* = aorta tunica media - * *Definition* = the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009873] + * *Definition* = the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009873 ] ## Synonyms - * adult aorta tunica media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta tunica media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree tunica media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica media of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica media of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica media of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica media of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult aorta tunica media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta tunica media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree tunica media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica media of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica media of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica media of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica media of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) and [tunica media](../../UBERON/22/UBERON_0002522.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003718.md b/md/UBERON/18/UBERON_0003718.md index cd3a8862eb..c6f20fbbf5 100644 --- a/md/UBERON/18/UBERON_0003718.md +++ b/md/UBERON/18/UBERON_0003718.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003718 * *Label* = muscle spindle - * *Definition* = the sensory organs in muscle that are involved in the stretch reflex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004069] + * *Definition* = the sensory organs in muscle that are involved in the stretch reflex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004069 ] ## Synonyms - * neuromuscular spindle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83607] - * muscle stretch receptor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:819] - * neuromuscular spindle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:819] + * neuromuscular spindle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83607 ] + * muscle stretch receptor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:819 ] + * neuromuscular spindle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:819 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:819 * MESH:A08.800.550.700.500.500 * SCTID:12945004 - * UMLS:C0027871 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_Spindle] + * UMLS:C0027871 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_Spindle ] * ncithesaurus:Muscle_Spindle ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0003918.md b/md/UBERON/18/UBERON_0003918.md index 48b42a35c5..ee13c57b7f 100644 --- a/md/UBERON/18/UBERON_0003918.md +++ b/md/UBERON/18/UBERON_0003918.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003918 * *Label* = kidney mesenchyme - * *Definition* = Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072074] + * *Definition* = Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072074 ] * *Comment* = check this ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [kidney](../../UBERON/13/UBERON_0002113.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004118.md b/md/UBERON/18/UBERON_0004118.md index c576bd2ee4..d9eb1a40ee 100644 --- a/md/UBERON/18/UBERON_0004118.md +++ b/md/UBERON/18/UBERON_0004118.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004118 * *Label* = vasculature of iris - * *Definition* = A vasculature that is part of a iris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a iris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * iris blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005568] - * iris vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * iris blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005568 ] + * iris vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * iris vasculature - * vascular network of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * vascular network of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004218.md b/md/UBERON/18/UBERON_0004218.md index fdd2ae3553..d3f434454a 100644 --- a/md/UBERON/18/UBERON_0004218.md +++ b/md/UBERON/18/UBERON_0004218.md @@ -3,47 +3,47 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004218 * *Label* = lower leg nerve - * *Definition* = A nerve that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -59,15 +59,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004318.md b/md/UBERON/18/UBERON_0004318.md index bb4048e663..2553514251 100644 --- a/md/UBERON/18/UBERON_0004318.md +++ b/md/UBERON/18/UBERON_0004318.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004318 * *Label* = distal phalanx of pedal digit 4 - * *Definition* = A distal phalanx that is part of a foot digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a foot digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th toe distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32630] - * distal phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32630] - * distal phalanx of the 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth distal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32630] + * 4th toe distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32630 ] + * distal phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32630 ] + * distal phalanx of the 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth distal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32630 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004418.md b/md/UBERON/18/UBERON_0004418.md index a9b9f65482..434ecf4d17 100644 --- a/md/UBERON/18/UBERON_0004418.md +++ b/md/UBERON/18/UBERON_0004418.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004418 * *Label* = proximal epiphysis of phalanx of manual digit 2 - * *Definition* = A proximal epiphysis that is part of a manual digit 2 phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a manual digit 2 phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37498] - * base of phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37498] - * base of phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37498] - * base of phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37498] + * basal epiphysis of phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37498 ] + * base of phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37498 ] + * base of phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37498 ] + * base of phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37498 ] * proximal epiphysis of phalanx of manual digit 2 - * proximal epiphysis of phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37498[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * proximal epiphysis of phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37498, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2 phalanx](../../UBERON/36/UBERON_0003636.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004518.md b/md/UBERON/18/UBERON_0004518.md index e6905cfa94..5943dc4922 100644 --- a/md/UBERON/18/UBERON_0004518.md +++ b/md/UBERON/18/UBERON_0004518.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004518 * *Label* = muscle of vertebral column - * *Definition* = A muscle that is attached to a vertebra of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A muscle that is attached to a vertebra of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * vertebral column muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22594] + * vertebral column muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22594 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [vertebra](../../UBERON/12/UBERON_0002412.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004618.md b/md/UBERON/18/UBERON_0004618.md index b1df150332..dd7d502236 100644 --- a/md/UBERON/18/UBERON_0004618.md +++ b/md/UBERON/18/UBERON_0004618.md @@ -7,8 +7,8 @@ ## Synonyms - * L2 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13073] - * second lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13073] + * L2 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13073 ] + * second lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13073 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:13073 * MA:0001429 * SCTID:181842006 - * UMLS:C0223507 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:L2_Vertebra] + * UMLS:C0223507 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:L2_Vertebra ] * ncithesaurus:L2_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004718.md b/md/UBERON/18/UBERON_0004718.md index 891d0bed7b..bafe721ae1 100644 --- a/md/UBERON/18/UBERON_0004718.md +++ b/md/UBERON/18/UBERON_0004718.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004718 * *Label* = Brodmann (1909) area 26 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_26] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_26 ] ## Synonyms - * B09-26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1757] - * Brodmann (1909) area 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1757] - * Brodmann area 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68623] - * Brodmann area 26, ectosplenial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1757] - * area 26 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68623] - * area 26 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1757] - * area ectosplenialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1757] - * ectosplenial area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68623] - * B09-26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1757[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 26 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1031] - * brodmann's area 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1031] - * ectosplenial area 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003979[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_26] + * B09-26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1757 ] + * Brodmann (1909) area 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1757 ] + * Brodmann area 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68623 ] + * Brodmann area 26, ectosplenial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1757 ] + * area 26 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68623 ] + * area 26 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1757 ] + * area ectosplenialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1757 ] + * ectosplenial area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68623 ] + * B09-26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1757, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 26 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1031 ] + * brodmann's area 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1031 ] + * ectosplenial area 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003979, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_26 ] ## Cross-references * BTO:0003979 * FMA:68623 * NIF_GrossAnatomy:birnlex_1757 - * NeuroNames:1031 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1757] - * UMLS:C1272489 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1757] + * NeuroNames:1031 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1757 ] + * UMLS:C1272489 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1757 ] * Wikipedia:Brodmann_area_26 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29[BTO:0003979]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004818.md b/md/UBERON/18/UBERON_0004818.md index 6e85da2cb0..9ed8998cef 100644 --- a/md/UBERON/18/UBERON_0004818.md +++ b/md/UBERON/18/UBERON_0004818.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004818 * *Label* = terminal bronchus epithelium - * *Definition* = An epithelium that is part of a terminal bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a terminal bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of terminal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of terminal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of terminal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of terminal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [terminal bronchus](../../UBERON/41/UBERON_0002041.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0004918.md b/md/UBERON/18/UBERON_0004918.md index 9241aae72e..46854eb3a0 100644 --- a/md/UBERON/18/UBERON_0004918.md +++ b/md/UBERON/18/UBERON_0004918.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004918 * *Label* = internal urethral sphincter - * *Definition* = a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_sphincter_muscle_of_urethra] + * *Definition* = a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_sphincter_muscle_of_urethra ] ## Synonyms * internal sphincter muscle of urethra * internal sphincter of urethra * internal urethral sphincter muscle - * musculus sphincter supracollicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45769[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus sphincter urethrae internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45769[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * preprostatic sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45769] - * sphincter urethrae internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45769[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * supracollicular sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45769] - * musculus sphincter urethrae internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_sphincter_muscle_of_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus sphincter supracollicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45769, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus sphincter urethrae internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45769, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * preprostatic sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45769 ] + * sphincter urethrae internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45769, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * supracollicular sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45769 ] + * musculus sphincter urethrae internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_sphincter_muscle_of_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0005018.md b/md/UBERON/18/UBERON_0005018.md index 5cd1d1dcf0..a54148cf74 100644 --- a/md/UBERON/18/UBERON_0005018.md +++ b/md/UBERON/18/UBERON_0005018.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005018 * *Label* = mucosa of nasal septum - * *Definition* = A mucosa that is part of a nasal septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a nasal septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of nasal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of nasal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of nasal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of nasal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of nasal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of nasal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasal septum](../../UBERON/06/UBERON_0001706.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0005118.md b/md/UBERON/18/UBERON_0005118.md index ac9a4466f3..277f4b6078 100644 --- a/md/UBERON/18/UBERON_0005118.md +++ b/md/UBERON/18/UBERON_0005118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005118 * *Label* = metanephric early distal convoluted tubule - * *Definition* = The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072222] + * *Definition* = The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072222 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [early distal convoluted tubule](../../UBERON/01/UBERON_0005101.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0005218.md b/md/UBERON/18/UBERON_0005218.md index 7684431aad..9c48389ad1 100644 --- a/md/UBERON/18/UBERON_0005218.md +++ b/md/UBERON/18/UBERON_0005218.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005218 * *Label* = diencephalon subarachnoid space - * *Definition* = A subarachnoid space that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subarachnoid space that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * subarachnoid space diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001302] + * subarachnoid space diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001302 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [subarachnoid space](../../UBERON/15/UBERON_0000315.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subarachnoid space that is part of the diencephalon. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0005418.md b/md/UBERON/18/UBERON_0005418.md index 47adfd9b40..6f886220a8 100644 --- a/md/UBERON/18/UBERON_0005418.md +++ b/md/UBERON/18/UBERON_0005418.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005418 * *Label* = hindlimb bud - * *Definition* = A limb bud that develops into a hindlimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb bud that develops into a hindlimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Genes: Tbx4 specifies hindlimbs. Wnt8c restricts Fgf10 in chick. ## Synonyms - * hind limb bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003066] + * hind limb bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003066 ] * posterior limb bud * leg bud * limb bud - hindlimb @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [limb bud](../../UBERON/47/UBERON_0004347.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior region of body](../../UBERON/54/UBERON_0000154.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The bilateral thickening of the ectoderm in the region of the first noticeable at NF stage 47, and innervated by NF stage 51. The hind limb buds develop before the forelimb buds.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0005818.md b/md/UBERON/18/UBERON_0005818.md index cc9df633a5..5a8017fe53 100644 --- a/md/UBERON/18/UBERON_0005818.md +++ b/md/UBERON/18/UBERON_0005818.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005818 * *Label* = cephalic flexure - * *Definition* = the first flexure, or bend, of the embryonic brain; it appears in the region of the mid-brain. In human embryos it generally occurs at the end of the 3rd week/beginning of 4th. By means of it the fore-brain is bent in a ventral direction around the anterior end of the notochord and fore-gut, with the result that the floor of the fore-brain comes to lie almost parallel with that of the hind-brain. This flexure causes the mid-brain to become, for a time, the most prominent part of the brain, since its dorsal surface corresponds with the convexity of the curve. As a consequence, the cardiac plate, which was previously anterior to the forebrain, approximates its adult location in what will become the thoracic region[WP]. Ventral bend in the brain occurring caudal to the adenohypophyseal placode[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cephalic_flexure[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = the first flexure, or bend, of the embryonic brain; it appears in the region of the mid-brain. In human embryos it generally occurs at the end of the 3rd week/beginning of 4th. By means of it the fore-brain is bent in a ventral direction around the anterior end of the notochord and fore-gut, with the result that the floor of the fore-brain comes to lie almost parallel with that of the hind-brain. This flexure causes the mid-brain to become, for a time, the most prominent part of the brain, since its dorsal surface corresponds with the convexity of the curve. As a consequence, the cardiac plate, which was previously anterior to the forebrain, approximates its adult location in what will become the thoracic region[WP]. Ventral bend in the brain occurring caudal to the adenohypophyseal placode[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cephalic_flexure, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - check ## Synonyms - * mesencephalic flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html] + * mesencephalic flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.dartmouth.edu/~rswenson/NeuroSci/chapter_4.html ] * midbrain flexure - * ventral flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001640] - * flexura mesencephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cephalic_flexure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventral flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001640 ] + * flexura mesencephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cephalic_flexure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ventral bend in the brain occurring caudal to the adenohypophyseal placode.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006118.md b/md/UBERON/18/UBERON_0006118.md index 2653e9afe4..b3c45b974f 100644 --- a/md/UBERON/18/UBERON_0006118.md +++ b/md/UBERON/18/UBERON_0006118.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006118 * *Label* = lamina I of gray matter of spinal cord - * *Definition* = Cytoarchitectural part of spinal cord gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] + * *Definition* = Cytoarchitectural part of spinal cord gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] ## Synonyms - * lamina i of gray matter of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * lamina marginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68862] - * lamina marginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * lamina spinalis i [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68862[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer of Waldeyer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * layer of waldeyer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68862] - * rexed lamina I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * rexed lamina i [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68862] - * rexed layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * spinal lamina I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100203] - * spinal lamina i [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68862] + * lamina i of gray matter of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * lamina marginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68862 ] + * lamina marginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * lamina spinalis i [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68862, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer of Waldeyer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * layer of waldeyer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68862 ] + * rexed lamina I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * rexed lamina i [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68862 ] + * rexed layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * spinal lamina I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100203 ] + * spinal lamina i [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68862 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006218.md b/md/UBERON/18/UBERON_0006218.md index ed2a827150..6e03fd25d8 100644 --- a/md/UBERON/18/UBERON_0006218.md +++ b/md/UBERON/18/UBERON_0006218.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006318.md b/md/UBERON/18/UBERON_0006318.md index c17d434c19..65f6064867 100644 --- a/md/UBERON/18/UBERON_0006318.md +++ b/md/UBERON/18/UBERON_0006318.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006318 * *Label* = orbitalis muscle - * *Definition* = An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbitalis_muscle] + * *Definition* = An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbitalis_muscle ] * *Comment* = subclass of 'muscle layer' in FMA ## Synonyms - * musculus orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orbital muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49034] - * orbital muscle of muller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49034] - * orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49034] - * musculus orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbitalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbitalis_muscle] + * musculus orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orbital muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49034 ] + * orbital muscle of muller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49034 ] + * orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49034 ] + * musculus orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbitalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbitalis_muscle ] ## Cross-references * FMA:49034 * MA:0001274 * SCTID:368790005 - * UMLS:C0229105 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbitalis_Muscle] + * UMLS:C0229105 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbitalis_Muscle ] * Wikipedia:Orbitalis_muscle * ncithesaurus:Orbitalis_Muscle @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006518.md b/md/UBERON/18/UBERON_0006518.md index 71c3f88575..bc59d52613 100644 --- a/md/UBERON/18/UBERON_0006518.md +++ b/md/UBERON/18/UBERON_0006518.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006518 * *Label* = right lung lobe - * *Definition* = A lobe of lung that is part of a right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobe of lung that is part of a right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: 4 in mice, divided into 3 in human by two interlobal fissures [ISBN-10:0123813611] ## Synonyms * lobe of right lung - * lobe of the right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Lobe_of_the_Right_Lung] + * lobe of the right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Lobe_of_the_Right_Lung ] ## Cross-references * MA:0001791 * SCTID:272654004 - * UMLS:C1285106 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lobe_of_the_Right_Lung] + * UMLS:C1285106 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lobe_of_the_Right_Lung ] * ncithesaurus:Lobe_of_the_Right_Lung ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobe of lung](../../UBERON/01/UBERON_0000101.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006618.md b/md/UBERON/18/UBERON_0006618.md index f5ceb5b36a..16381d5aca 100644 --- a/md/UBERON/18/UBERON_0006618.md +++ b/md/UBERON/18/UBERON_0006618.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006618 * *Label* = atrium auricular region - * *Definition* = A small conical pouch projections located on the upper anterior portion of each atrium of the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010489[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_appendage] + * *Definition* = A small conical pouch projections located on the upper anterior portion of each atrium of the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010489, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_appendage ] ## Synonyms * atrial appendage - * atrial auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010489] + * atrial auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010489 ] * atrium appendage - * auricle of atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77110] - * auricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77110] - * auricula (cor) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77110] - * auricula atrii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77110[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * auricle of atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77110 ] + * auricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77110 ] + * auricula (cor) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77110 ] + * auricula atrii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77110, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * auricular appendage - * cardiac auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77110] - * heart atrium auriclular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010489] + * cardiac auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77110 ] + * heart atrium auriclular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010489 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006718.md b/md/UBERON/18/UBERON_0006718.md index 03a313c6ec..9b3c751e60 100644 --- a/md/UBERON/18/UBERON_0006718.md +++ b/md/UBERON/18/UBERON_0006718.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006718 * *Label* = medial pterygoid muscle - * *Definition* = The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] + * *Definition* = The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] ## Synonyms - * musculus pterygoideus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus pterygoideus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoid medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002361] - * pterygoideus medial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] - * pterygoideus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] - * internal pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] + * musculus pterygoideus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus pterygoideus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoid medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002361 ] + * pterygoideus medial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] + * pterygoideus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] + * internal pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] * internal pterygoid muscle - * medial pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] - * pterygoidei internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] - * pterygoideus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_pterygoid_muscle] + * medial pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] + * pterygoidei internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] + * pterygoideus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_pterygoid_muscle ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:49011 * MA:0002361 * SCTID:244771003 - * UMLS:C1512882 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Pterygoid_Muscle] + * UMLS:C1512882 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Pterygoid_Muscle ] * Wikipedia:Medial_pterygoid_muscle * http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png * ncithesaurus:Internal_Pterygoid_Muscle @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0006918.md b/md/UBERON/18/UBERON_0006918.md index ba6b43088f..894271d0b8 100644 --- a/md/UBERON/18/UBERON_0006918.md +++ b/md/UBERON/18/UBERON_0006918.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parakeratinized epithelium](../../UBERON/93/UBERON_0013193.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007118.md b/md/UBERON/18/UBERON_0007118.md index 3bc90ecac6..bd1ecbe6a7 100644 --- a/md/UBERON/18/UBERON_0007118.md +++ b/md/UBERON/18/UBERON_0007118.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007118 * *Label* = umbilicus - * *Definition* = The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.849[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navel] + * *Definition* = The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.849, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navel ] ## Synonyms - * navel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61584] - * umbilical part of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61584] - * umbilical region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61584] + * navel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61584 ] + * umbilical part of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61584 ] + * umbilical region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61584 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:29 * MESH:A01.047.849 * SCTID:243961003 - * UMLS:C0041638 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Umbilicus] + * UMLS:C0041638 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Umbilicus ] * Wikipedia:Navel * galen:Umbilicus * ncithesaurus:Umbilicus @@ -41,8 +41,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = omphalo * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = umbilical - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007318.md b/md/UBERON/18/UBERON_0007318.md index 5af36b397b..a0854c81a5 100644 --- a/md/UBERON/18/UBERON_0007318.md +++ b/md/UBERON/18/UBERON_0007318.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007318 * *Label* = saphenous vein - * *Definition* = Either of two main superficial veins of the leg, one larger than the other, that begin at the foot. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001808] + * *Definition* = Either of two main superficial veins of the leg, one larger than the other, that begin at the foot. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001808 ] ## Synonyms @@ -14,7 +14,7 @@ * CALOHA:TS-0893 * MA:0002215 * MESH:A07.231.908.819 - * UMLS:C0036186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Saphenous_Vein] + * UMLS:C0036186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Saphenous_Vein ] * ncithesaurus:Saphenous_Vein ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007418.md b/md/UBERON/18/UBERON_0007418.md index ebffc7d95e..ee815c683c 100644 --- a/md/UBERON/18/UBERON_0007418.md +++ b/md/UBERON/18/UBERON_0007418.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007418 * *Label* = decussation of neuraxis - * *Definition* = Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144064] + * *Definition* = Nerve fibers crossing the midline of the neuraxis relative to their point of origin, on a course to from one level of the nervous system to another. (CUMBO, Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144064 ] ## Synonyms - * neuraxis decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83858] + * neuraxis decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83858 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007618.md b/md/UBERON/18/UBERON_0007618.md index 44d5fbc566..6c502ad780 100644 --- a/md/UBERON/18/UBERON_0007618.md +++ b/md/UBERON/18/UBERON_0007618.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007618 * *Label* = synovial cavity of hip joint - * *Definition* = A synovial cavity of joint that is part of a hip joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A synovial cavity of joint that is part of a hip joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hip joint](../../UBERON/86/UBERON_0001486.md) and [synovial cavity of joint](../../UBERON/17/UBERON_0007617.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007718.md b/md/UBERON/18/UBERON_0007718.md index b423994d83..57f2103d57 100644 --- a/md/UBERON/18/UBERON_0007718.md +++ b/md/UBERON/18/UBERON_0007718.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0007818.md b/md/UBERON/18/UBERON_0007818.md index c1192a942b..4382f06a7b 100644 --- a/md/UBERON/18/UBERON_0007818.md +++ b/md/UBERON/18/UBERON_0007818.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007818 * *Label* = major alar cartilage - * *Definition* = The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_alar_cartilage] + * *Definition* = The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_alar_cartilage ] ## Synonyms - * cartilago alaris major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59504] - * greater alar cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59504] - * cartilago alaris major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_alar_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cartilago alaris major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59504 ] + * greater alar cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59504 ] + * cartilago alaris major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_alar_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0008618.md b/md/UBERON/18/UBERON_0008618.md index 3740f85244..e3c19bb861 100644 --- a/md/UBERON/18/UBERON_0008618.md +++ b/md/UBERON/18/UBERON_0008618.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008618 * *Label* = subcostal muscle - * *Definition* = The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] + * *Definition* = The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] ## Synonyms - * musculus subcostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subcostal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] - * subcostales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] - * subcostales muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] - * subcostales muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] - * subcostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostalis_muscle] + * musculus subcostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subcostal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] + * subcostales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] + * subcostales muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] + * subcostales muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] + * subcostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostalis_muscle ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0008818.md b/md/UBERON/18/UBERON_0008818.md index 1ccad71169..283e9c0a9a 100644 --- a/md/UBERON/18/UBERON_0008818.md +++ b/md/UBERON/18/UBERON_0008818.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008818 * *Label* = superior mediastinum - * *Definition* = The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mediastinum] + * *Definition* = The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mediastinum ] ## Synonyms - * superior mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9827] - * mediastinum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mediastinum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9827 ] + * mediastinum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mediastinum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:9827 * SCTID:362687003 - * UMLS:C0230147 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Mediastinum] + * UMLS:C0230147 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Mediastinum ] * Wikipedia:Superior_mediastinum * http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png * ncithesaurus:Superior_Mediastinum @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0008918.md b/md/UBERON/18/UBERON_0008918.md index c759098367..34414bfe05 100644 --- a/md/UBERON/18/UBERON_0008918.md +++ b/md/UBERON/18/UBERON_0008918.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008918 * *Label* = ampulla of Lorenzini - * *Definition* = The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampullae_of_Lorenzini] + * *Definition* = The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampullae_of_Lorenzini ] ## Synonyms - * ampullae of Lorenzini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampullae_of_Lorenzini[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ampullae of Lorenzini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampullae_of_Lorenzini, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0009118.md b/md/UBERON/18/UBERON_0009118.md index a018aedf0f..749084c7fb 100644 --- a/md/UBERON/18/UBERON_0009118.md +++ b/md/UBERON/18/UBERON_0009118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009118 * *Label* = marsupial pouch - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pouch_(marsupial)] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pouch_(marsupial) ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0009618.md b/md/UBERON/18/UBERON_0009618.md index f8f428bbcc..6c0743f113 100644 --- a/md/UBERON/18/UBERON_0009618.md +++ b/md/UBERON/18/UBERON_0009618.md @@ -6,7 +6,7 @@ ## Synonyms - * trunk and cervical paraxial mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002094] + * trunk and cervical paraxial mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002094 ] * trunk paraxial mesenchyme ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0009718.md b/md/UBERON/18/UBERON_0009718.md index 1cc772efd1..aea7e6f54f 100644 --- a/md/UBERON/18/UBERON_0009718.md +++ b/md/UBERON/18/UBERON_0009718.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009718 * *Label* = neurohypophyseal duct - * *Definition* = Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1002/jez.b.21013] + * *Definition* = Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1002/jez.b.21013 ] * *Comment* = Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0009918.md b/md/UBERON/18/UBERON_0009918.md index bb53d22587..6e945f9e21 100644 --- a/md/UBERON/18/UBERON_0009918.md +++ b/md/UBERON/18/UBERON_0009918.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009918 * *Label* = retrotrapezoid nucleus - * *Definition* = the loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011406] + * *Definition* = the loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011406 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0010018.md b/md/UBERON/18/UBERON_0010018.md index 25b74919e6..24dba52a16 100644 --- a/md/UBERON/18/UBERON_0010018.md +++ b/md/UBERON/18/UBERON_0010018.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010018 * *Label* = spiral valve of conus arteriosus - * *Definition* = The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/342notes9.html] + * *Definition* = The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/342notes9.html ] * *Comment* = Taxon notes: many dipnoans and amphibians. Evolution notes: The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974) ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0010418.md b/md/UBERON/18/UBERON_0010418.md index c8242110ef..71e6b82f2b 100644 --- a/md/UBERON/18/UBERON_0010418.md +++ b/md/UBERON/18/UBERON_0010418.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010418 * *Label* = urethral opening - * *Definition* = An orifice that is part of a lower urinary tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An orifice that is part of a lower urinary tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * urethral orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urethral orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower urinary tract](../../UBERON/56/UBERON_0001556.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0010518.md b/md/UBERON/18/UBERON_0010518.md index 49ea08ad9a..8bbaf6d744 100644 --- a/md/UBERON/18/UBERON_0010518.md +++ b/md/UBERON/18/UBERON_0010518.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010518 * *Label* = pelvic fin clasper - * *Definition* = The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://fishbase.org/Glossary/Glossary.php?q=clasper] + * *Definition* = The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://fishbase.org/Glossary/Glossary.php?q=clasper ] ## Synonyms - * myxopterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://fishbase.org/Glossary/Glossary.php?q=clasper] + * myxopterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://fishbase.org/Glossary/Glossary.php?q=clasper ] * clasper ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [clasper](../../UBERON/16/UBERON_0010516.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0010718.md b/md/UBERON/18/UBERON_0010718.md index f71915603f..b24d50c0cb 100644 --- a/md/UBERON/18/UBERON_0010718.md +++ b/md/UBERON/18/UBERON_0010718.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pubic endochondral element](../../UBERON/55/UBERON_0015055.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011118.md b/md/UBERON/18/UBERON_0011118.md index 819d3957c8..af55d76830 100644 --- a/md/UBERON/18/UBERON_0011118.md +++ b/md/UBERON/18/UBERON_0011118.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011118 * *Label* = tarsometatarsal joint - * *Definition* = The tarsometatarsal articulations are arthrodial joints in the pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations] + * *Definition* = The tarsometatarsal articulations are arthrodial joints in the pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations ] ## Synonyms * tarso-metatarsal join - * Lisfranc joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations] - * articulationes tarsometatarsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cuboideometatarsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations] - * tarsometatarsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations] - * tarsometatarsal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsal_articulations] + * Lisfranc joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations ] + * articulationes tarsometatarsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cuboideometatarsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations ] + * tarsometatarsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations ] + * tarsometatarsal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsal_articulations ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [connects](../../ts/core#connects.md) some [tarsal bone](../../UBERON/47/UBERON_0001447.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011218.md b/md/UBERON/18/UBERON_0011218.md index 98540f6ec3..7f2caa4943 100644 --- a/md/UBERON/18/UBERON_0011218.md +++ b/md/UBERON/18/UBERON_0011218.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011218 * *Label* = spinalis cervicis muscle - * *Definition* = Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002623] + * *Definition* = Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002623 ] * *Comment* = The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuch, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis] ## Synonyms - * spinal muscle of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002623] - * musculus spinalis cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002623] + * spinal muscle of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002623 ] + * musculus spinalis cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002623 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011318.md b/md/UBERON/18/UBERON_0011318.md index af36b49b41..b7791d0058 100644 --- a/md/UBERON/18/UBERON_0011318.md +++ b/md/UBERON/18/UBERON_0011318.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011318 * *Label* = capsule of temporomandibular joint - * *Definition* = The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_temporomandibular_joint] + * *Definition* = The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_temporomandibular_joint ] ## Synonyms - * articular capsule of temporomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57050] - * capsula articularis articulationis temporomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_the_temporomandibular_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articular capsule of temporomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57050 ] + * capsula articularis articulationis temporomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_the_temporomandibular_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [articular capsule](../../UBERON/84/UBERON_0001484.md) and [part_of](../../BFO/50/BFO_0000050.md) some [temporomandibular joint](../../UBERON/00/UBERON_0003700.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011618.md b/md/UBERON/18/UBERON_0011618.md index 7d96cca18d..16e854a2c6 100644 --- a/md/UBERON/18/UBERON_0011618.md +++ b/md/UBERON/18/UBERON_0011618.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011618 * *Label* = basihyal bone - * *Definition* = Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000316] + * *Definition* = Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000316 ] ## Synonyms - * basihyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000316] - * glossohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000316] + * basihyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000316 ] + * glossohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000316 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011818.md b/md/UBERON/18/UBERON_0011818.md index 19e05cc8e0..85e8cc0184 100644 --- a/md/UBERON/18/UBERON_0011818.md +++ b/md/UBERON/18/UBERON_0011818.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011818 * *Label* = superficial fascia - * *Definition* = Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_fascia] + * *Definition* = Superficial fascia is found in the subcutis in most regions of the body, blending with the reticular layer of the dermis. It is present on the face, over the upper portion of the sternocleidomastoid, at the nape of the neck, and overlying the sternum. It is comprised mainly of loose areolar connective tissue and adipose and is the layer that primarily determines the shape of a body. In addition to its subcutaneous presence, this type of fascia surrounds organs and glands, neurovascular bundles, and is found at many other locations where it fills otherwise unoccupied space. It serves as a storage medium of fat and water; as a passageway for lymph, nerve and blood vessels; and as a protective padding to cushion and insulate. Superficial fascia is present, but does not contain fat, in the eyelids, ear, scrotum, penis and clitoris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_fascia ] * *Comment* = We follow FMA, BTO, NCIT and WP in making this a distinct class from hypodermis. ## Synonyms - * subcutaneous tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9630] - * tela subcutanea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * subcutaneous tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9630 ] + * tela subcutanea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011818 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0011918.md b/md/UBERON/18/UBERON_0011918.md index 1ffd297b05..314cc11d48 100644 --- a/md/UBERON/18/UBERON_0011918.md +++ b/md/UBERON/18/UBERON_0011918.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011918 * *Label* = line of Schwalbe - * *Definition* = The thickened peripheral margin of the vitreous membrane of the cornea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006250] + * *Definition* = The thickened peripheral margin of the vitreous membrane of the cornea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006250 ] * *Comment* = AO notes: A line in FMA, a structure in MP ## Synonyms - * Schwalbe line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58422] - * Schwalbe's line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58422] - * Schwalbe's ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006250] + * Schwalbe line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58422 ] + * Schwalbe's line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58422 ] + * Schwalbe's ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006250 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0012118.md b/md/UBERON/18/UBERON_0012118.md index 2cb7b56cea..a857e7b9a4 100644 --- a/md/UBERON/18/UBERON_0012118.md +++ b/md/UBERON/18/UBERON_0012118.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012118 * *Label* = infraspinatus tendon - * *Definition* = The infraspinatus muscle inserts at this tendon to the distal greater tubercle of the humerus . This tendon stretches across the shoulder joint to attach to the humerus and in doing so acts as a very strong ligament to hold the joint surface in apposition. This structure restricts the movement of the shoulder joint to flexion and extension (together with the suscapularis tendon and the supraspinatus tendon). A bursa lies under this tendon at the greater tubercle of the humerus. The bursa is lined by a synovial membrance and filled with synovial fluid and protects the infraspinatus tendon and the shoulder joint by allowing the transmissions of tension and sheer forces around an angle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:963] + * *Definition* = The infraspinatus muscle inserts at this tendon to the distal greater tubercle of the humerus . This tendon stretches across the shoulder joint to attach to the humerus and in doing so acts as a very strong ligament to hold the joint surface in apposition. This structure restricts the movement of the shoulder joint to flexion and extension (together with the suscapularis tendon and the supraspinatus tendon). A bursa lies under this tendon at the greater tubercle of the humerus. The bursa is lined by a synovial membrance and filled with synovial fluid and protects the infraspinatus tendon and the shoulder joint by allowing the transmissions of tension and sheer forces around an angle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:963 ] ## Synonyms - * tendon of infraspinatus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37076] + * tendon of infraspinatus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37076 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [infraspinatus muscle](../../UBERON/77/UBERON_0001477.md) and [tendon](../../UBERON/43/UBERON_0000043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0012318.md b/md/UBERON/18/UBERON_0012318.md index 4a0434e008..c9ef9fe620 100644 --- a/md/UBERON/18/UBERON_0012318.md +++ b/md/UBERON/18/UBERON_0012318.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012318 * *Label* = anterior ethmoidal artery - * *Definition* = The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] + * *Definition* = The anterior ethmoidal artery, also anterior ethmoid artery is an artery of the head. Once branching from the ophthalmic artery, it accompanies the nasociliary nerve through the anterior ethmoidal canal to supply the anterior and middle ethmoidal cells, frontal sinus, and anterosuperior aspect of the lateral nasal wall[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] ## Synonyms - * a. ethmoidalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria ethmoidalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anterior ethmoid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * anterior meningeal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * anterior meningeal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] + * a. ethmoidalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria ethmoidalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anterior ethmoid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * anterior meningeal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * anterior meningeal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012318 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0012418.md b/md/UBERON/18/UBERON_0012418.md index ecb3a5489d..287ae5b512 100644 --- a/md/UBERON/18/UBERON_0012418.md +++ b/md/UBERON/18/UBERON_0012418.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system venous blood vessel](../../UBERON/76/UBERON_0003476.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012418 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0013118.md b/md/UBERON/18/UBERON_0013118.md index 45449b7077..b9b31f516c 100644 --- a/md/UBERON/18/UBERON_0013118.md +++ b/md/UBERON/18/UBERON_0013118.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013118 * *Label* = sulcus of brain - * *Definition* = a depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sulcus_(neuroanatomy)] + * *Definition* = a depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sulcus_(neuroanatomy) ] ## Synonyms - * sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144078] - * fissure of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sulcus_(neuroanatomy)] + * sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144078 ] + * fissure of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sulcus_(neuroanatomy) ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) and [sulcus](../../UBERON/93/UBERON_0000093.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Indentation on the surface of the brain or spinal cord that forms a recognizable landmark, e.g., central sulcus, sulcus limitans (CUMBO) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013118 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0013218.md b/md/UBERON/18/UBERON_0013218.md index ba0586d9c5..a5ef0c2a2e 100644 --- a/md/UBERON/18/UBERON_0013218.md +++ b/md/UBERON/18/UBERON_0013218.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013218 * *Label* = rete mirabile - * *Definition* = A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] + * *Definition* = A rete mirabile (Latin for 'wonderful net'; plural retia mirabilia) is a complex of arteries and veins lying very close to each other, found in some vertebrates. The rete mirabile utilizes countercurrent blood flow within the net (blood flowing in opposite directions. ) It exchanges heat, ions, or gases between vessel walls so that the two bloodstreams within the rete maintain a gradient with respect to temperature, or concentration of gases or solutes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] * *Comment* = GAT in FMA ## Synonyms - * red body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] - * red gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] - * rete mirabilia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] - * rete mirabilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] - * retie mirabilia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * wonderful net [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_mirabile] + * red body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] + * red gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] + * rete mirabilia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] + * rete mirabilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] + * retie mirabilia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * wonderful net [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_mirabile ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013218 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0013518.md b/md/UBERON/18/UBERON_0013518.md index 900e0cf7a0..f795f44f13 100644 --- a/md/UBERON/18/UBERON_0013518.md +++ b/md/UBERON/18/UBERON_0013518.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [coccygeal vertebra](../../UBERON/70/UBERON_0006070.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013518 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0013618.md b/md/UBERON/18/UBERON_0013618.md index 3fab19d30d..04260a9efd 100644 --- a/md/UBERON/18/UBERON_0013618.md +++ b/md/UBERON/18/UBERON_0013618.md @@ -6,8 +6,8 @@ ## Synonyms - * permanent molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84207] - * secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84207] + * permanent molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84207 ] + * secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84207 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [molar tooth](../../UBERON/55/UBERON_0003655.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary dentition](../../UBERON/74/UBERON_0007774.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0013718.md b/md/UBERON/18/UBERON_0013718.md index 33f910feed..1a59e3c795 100644 --- a/md/UBERON/18/UBERON_0013718.md +++ b/md/UBERON/18/UBERON_0013718.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013718 * *Label* = dartos muscle - * *Definition* = The dartos fascia is a fat-free layer of smooth muscular fiber outside the external spermatic fascia but below the skin. It is a continuation of Scarpa's Fascia which is a membranous layer of the subcutaneous tissue in the abdominal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dartos] + * *Definition* = The dartos fascia is a fat-free layer of smooth muscular fiber outside the external spermatic fascia but below the skin. It is a continuation of Scarpa's Fascia which is a membranous layer of the subcutaneous tissue in the abdominal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dartos ] ## Synonyms - * dartos muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dartos] - * dartos tunic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dartos] + * dartos muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dartos ] + * dartos tunic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dartos ] ## Cross-references @@ -32,8 +32,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dartoic * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dartoid - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013718 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0014618.md b/md/UBERON/18/UBERON_0014618.md index ade9213aa0..b7b5d06df3 100644 --- a/md/UBERON/18/UBERON_0014618.md +++ b/md/UBERON/18/UBERON_0014618.md @@ -6,22 +6,22 @@ ## Synonyms - * middle frontal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1650[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * mfs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1650[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * intermediate frontal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:62] - * middle frontal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1650] - * sulcus F3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1650] - * sulcus frontalis intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:62[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus frontalis medius (Eberstaller) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:62[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus frontalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1650] + * middle frontal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1650, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * mfs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1650, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * intermediate frontal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:62 ] + * middle frontal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1650 ] + * sulcus F3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1650 ] + * sulcus frontalis intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:62, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus frontalis medius (Eberstaller) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:62, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus frontalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1650 ] ## Cross-references * BAMS:mfs * NIF_GrossAnatomy:birnlex_1650 - * NeuroNames:62 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1650] + * NeuroNames:62 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1650 ] * SCTID:369227007 - * UMLS:C0228199 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1650] + * UMLS:C0228199 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1650 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014618 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0014918.md b/md/UBERON/18/UBERON_0014918.md index ebdfaa9234..5b52754288 100644 --- a/md/UBERON/18/UBERON_0014918.md +++ b/md/UBERON/18/UBERON_0014918.md @@ -6,11 +6,11 @@ ## Synonyms - * retrosplenial area, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1802] - * retrosplenial cortex, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1802] - * retrosplenial granular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1802] - * retrosplenial granular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1802] - * ventral part of the retrosplenial area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1802] + * retrosplenial area, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1802 ] + * retrosplenial cortex, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1802 ] + * retrosplenial granular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1802 ] + * retrosplenial granular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1802 ] + * ventral part of the retrosplenial area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1802 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014918 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_0015018.md b/md/UBERON/18/UBERON_0015018.md index 4ecc6cb87a..eedc520ac0 100644 --- a/md/UBERON/18/UBERON_0015018.md +++ b/md/UBERON/18/UBERON_0015018.md @@ -3,12 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015018 * *Label* = malleus endochondral element - * *Definition* = A malleus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A malleus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * malleus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * malleus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * malleus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * malleus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -18,19 +19,22 @@ ## Superclasses + * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [endochondral element](../../UBERON/63/UBERON_0010363.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) ## Equivalencies - * ObjectUnionOf( ) + * [malleus bone](../../UBERON/89/UBERON_0001689.md)or[malleus cartilage element](../../UBERON/54/UBERON_0010054.md)or[malleus pre-cartilage condensation](../../UBERON/62/UBERON_0006262.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_1000018.md b/md/UBERON/18/UBERON_1000018.md index bb171dce08..9f61816825 100644 --- a/md/UBERON/18/UBERON_1000018.md +++ b/md/UBERON/18/UBERON_1000018.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000018 * *Label* = cluster of hairs - * *Definition* = A small collection or tuft of hairs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A small collection or tuft of hairs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000018 + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2000318.md b/md/UBERON/18/UBERON_2000318.md index 7403f212a1..80af166674 100644 --- a/md/UBERON/18/UBERON_2000318.md +++ b/md/UBERON/18/UBERON_2000318.md @@ -7,7 +7,7 @@ ## Synonyms - * brain stem/spinal tracts and commissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * brain stem/spinal tracts and commissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2000618.md b/md/UBERON/18/UBERON_2000618.md index e1d9b76688..6a9aa90ce3 100644 --- a/md/UBERON/18/UBERON_2000618.md +++ b/md/UBERON/18/UBERON_2000618.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000618 * *Label* = ansulate commissure - * *Definition* = A brainstem commissure that contains major crossed descending projections from both tectal lobes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pubmed/3496554] + * *Definition* = A brainstem commissure that contains major crossed descending projections from both tectal lobes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pubmed/3496554 ] * *Comment* = This class is present in fishes and amphibians. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2000718.md b/md/UBERON/18/UBERON_2000718.md index 781775986f..b35f1af719 100644 --- a/md/UBERON/18/UBERON_2000718.md +++ b/md/UBERON/18/UBERON_2000718.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000718 * *Label* = epaxial region somite 27 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2000918.md b/md/UBERON/18/UBERON_2000918.md index 142f72ca4d..a4a65a1a2a 100644 --- a/md/UBERON/18/UBERON_2000918.md +++ b/md/UBERON/18/UBERON_2000918.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000918[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000918, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_2001018.md b/md/UBERON/18/UBERON_2001018.md index 5abcdda99e..a927e60bfc 100644 --- a/md/UBERON/18/UBERON_2001018.md +++ b/md/UBERON/18/UBERON_2001018.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001018 * *Label* = myotome somite 25 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2001118.md b/md/UBERON/18/UBERON_2001118.md index 528df077c9..8ace4d187d 100644 --- a/md/UBERON/18/UBERON_2001118.md +++ b/md/UBERON/18/UBERON_2001118.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001118 * *Label* = urogenital papilla - * *Definition* = A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * UGP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001118] - * anal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001118] - * anal papillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001118] - * genital papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001118] - * urogenital papillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001118[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * UGP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001118 ] + * anal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001118 ] + * anal papillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001118 ] + * genital papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001118 ] + * urogenital papillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001118, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2001418.md b/md/UBERON/18/UBERON_2001418.md index 4858a74a45..fc038b385f 100644 --- a/md/UBERON/18/UBERON_2001418.md +++ b/md/UBERON/18/UBERON_2001418.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001418 * *Label* = obsolete dorsal fin lepidotrichium - * *Definition* = Lepidotrichium which is part of the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lepidotrichium which is part of the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsal fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001418[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * dorsal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001418] + * dorsal fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001418, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * dorsal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001418 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000177 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_2001518.md b/md/UBERON/18/UBERON_2001518.md index 6d30b4cdd6..c5b5f6980a 100644 --- a/md/UBERON/18/UBERON_2001518.md +++ b/md/UBERON/18/UBERON_2001518.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001518 * *Label* = ceratobranchial 3 cartilage - * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2001718.md b/md/UBERON/18/UBERON_2001718.md index b7d34ea166..9c7c241ba9 100644 --- a/md/UBERON/18/UBERON_2001718.md +++ b/md/UBERON/18/UBERON_2001718.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001718 * *Label* = caudal principal ray 6 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2001818.md b/md/UBERON/18/UBERON_2001818.md index 53d60940ad..fd36fa6cb8 100644 --- a/md/UBERON/18/UBERON_2001818.md +++ b/md/UBERON/18/UBERON_2001818.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001818 * *Label* = dorsal fin proximal radial bone 1 - * *Definition* = dorsal fin proximal radial 1 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 1 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 1](../../UBERON/18/UBERON_2101818.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2001918.md b/md/UBERON/18/UBERON_2001918.md index f069617c05..12807b353d 100644 --- a/md/UBERON/18/UBERON_2001918.md +++ b/md/UBERON/18/UBERON_2001918.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001918 * *Label* = basibranchial 4 element - * *Definition* = Skeletal element that is median and associated with branchial arch 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is median and associated with branchial arch 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2002018.md b/md/UBERON/18/UBERON_2002018.md index 216a36ef57..0f71b4d705 100644 --- a/md/UBERON/18/UBERON_2002018.md +++ b/md/UBERON/18/UBERON_2002018.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002018 * *Label* = anterior limb of ceratobranchial 5 cartilage - * *Definition* = Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = This term applies to cypriniform fishes. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2002118.md b/md/UBERON/18/UBERON_2002118.md index eb03c115b8..b89c6897b3 100644 --- a/md/UBERON/18/UBERON_2002118.md +++ b/md/UBERON/18/UBERON_2002118.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002118 * *Label* = scale radius - * *Definition* = Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0226870138] + * *Definition* = Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0226870138 ] ## Synonyms - * radii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002118[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * radii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002118, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2002218.md b/md/UBERON/18/UBERON_2002218.md index 1ecdd25f1f..fc1c38e27c 100644 --- a/md/UBERON/18/UBERON_2002218.md +++ b/md/UBERON/18/UBERON_2002218.md @@ -6,7 +6,7 @@ ## Synonyms - * parallel fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002218[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * parallel fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002218, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2005018.md b/md/UBERON/18/UBERON_2005018.md index 49f5fa4843..e842768d83 100644 --- a/md/UBERON/18/UBERON_2005018.md +++ b/md/UBERON/18/UBERON_2005018.md @@ -6,7 +6,7 @@ ## Synonyms - * EFA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005018] + * EFA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005018 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2005118.md b/md/UBERON/18/UBERON_2005118.md index 369c6cfc90..2d822695b5 100644 --- a/md/UBERON/18/UBERON_2005118.md +++ b/md/UBERON/18/UBERON_2005118.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005118 * *Label* = middle lateral line primordium - * *Definition* = A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * middle lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005118[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * middle lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005118, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2005218.md b/md/UBERON/18/UBERON_2005218.md index 1404ba93b0..deaa6df6c7 100644 --- a/md/UBERON/18/UBERON_2005218.md +++ b/md/UBERON/18/UBERON_2005218.md @@ -6,7 +6,7 @@ ## Synonyms - * caudal dorsal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005218] + * caudal dorsal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005218 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_2101818.md b/md/UBERON/18/UBERON_2101818.md index 83474cc59c..1eaf6f296d 100644 --- a/md/UBERON/18/UBERON_2101818.md +++ b/md/UBERON/18/UBERON_2101818.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_2201818.md b/md/UBERON/18/UBERON_2201818.md index 141de7577d..a0875d56dd 100644 --- a/md/UBERON/18/UBERON_2201818.md +++ b/md/UBERON/18/UBERON_2201818.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201818 * *Label* = dorsal fin proximal radial cartilage 1 - * *Definition* = dorsal fin proximal radial 1 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 1 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 1](../../UBERON/18/UBERON_2101818.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3000018.md b/md/UBERON/18/UBERON_3000018.md index 9966c64879..8b34e03366 100644 --- a/md/UBERON/18/UBERON_3000018.md +++ b/md/UBERON/18/UBERON_3000018.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000018 * *Label* = anterior ramus of pterygoid - * *Definition* = In a triradiate pterygoid, the process that extends anteriorly towards the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a triradiate pterygoid, the process that extends anteriorly towards the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * ramus maxillaris of pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000018] + * ramus maxillaris of pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000018 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3000118.md b/md/UBERON/18/UBERON_3000118.md index 906a6b5c8f..cdd1ff115c 100644 --- a/md/UBERON/18/UBERON_3000118.md +++ b/md/UBERON/18/UBERON_3000118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000118 * *Label* = crista supraorbitalis - * *Definition* = Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3000518.md b/md/UBERON/18/UBERON_3000518.md index e28a73e4c8..f13f5339e4 100644 --- a/md/UBERON/18/UBERON_3000518.md +++ b/md/UBERON/18/UBERON_3000518.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000518 * *Label* = pseudodentary - * *Definition* = Compound bone of adult Gymnophiona, consisting of dentary, coronoid and mentomeckelian. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Compound bone of adult Gymnophiona, consisting of dentary, coronoid and mentomeckelian. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3000718.md b/md/UBERON/18/UBERON_3000718.md index 33729608eb..c0f0125357 100644 --- a/md/UBERON/18/UBERON_3000718.md +++ b/md/UBERON/18/UBERON_3000718.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000718 * *Label* = ectochordal - * *Definition* = Spool-shaped vertebral centrum with an open center in which the notochord lies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Griffiths_1959] + * *Definition* = Spool-shaped vertebral centrum with an open center in which the notochord lies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Griffiths_1959 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3000818.md b/md/UBERON/18/UBERON_3000818.md index 1b14b35117..b6deb8d975 100644 --- a/md/UBERON/18/UBERON_3000818.md +++ b/md/UBERON/18/UBERON_3000818.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000818 * *Label* = margo anterior of scapula - * *Definition* = Anterior margin of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior margin of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3010018.md b/md/UBERON/18/UBERON_3010018.md index 7c9edcad72..4192c1540a 100644 --- a/md/UBERON/18/UBERON_3010018.md +++ b/md/UBERON/18/UBERON_3010018.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010018 * *Label* = M. glutaeus magnus - * *Definition* = Originates from the superior process of the ilium and inserts on the aponeuronis of the M. cruralis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the superior process of the ilium and inserts on the aponeuronis of the M. cruralis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3010118.md b/md/UBERON/18/UBERON_3010118.md index 96a2030873..40c49f631e 100644 --- a/md/UBERON/18/UBERON_3010118.md +++ b/md/UBERON/18/UBERON_3010118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010118 * *Label* = quadrato-orbital commissure - * *Definition* = Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3010218.md b/md/UBERON/18/UBERON_3010218.md index d488088b9f..5e15103811 100644 --- a/md/UBERON/18/UBERON_3010218.md +++ b/md/UBERON/18/UBERON_3010218.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010218 * *Label* = external carotid - * *Definition* = An artery which supplies blood to the muscles of the tongue and floor of the mouth via four major branches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = An artery which supplies blood to the muscles of the tongue and floor of the mouth via four major branches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3010318.md b/md/UBERON/18/UBERON_3010318.md index 9f8dbe18ab..605a1e17bf 100644 --- a/md/UBERON/18/UBERON_3010318.md +++ b/md/UBERON/18/UBERON_3010318.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010318 * *Label* = obsolete iridophore - * *Definition* = A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * guanophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010318] + * guanophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010318 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000431 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_3010618.md b/md/UBERON/18/UBERON_3010618.md index 709628ddee..ad8f685161 100644 --- a/md/UBERON/18/UBERON_3010618.md +++ b/md/UBERON/18/UBERON_3010618.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010618 * *Label* = constrictor laryngis externus - * *Definition* = Involved in the movement of the arytenoid cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Involved in the movement of the arytenoid cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms - * hyolaryngus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010618] - * sphincter anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010618] + * hyolaryngus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010618 ] + * sphincter anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010618 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_3010818.md b/md/UBERON/18/UBERON_3010818.md index 30fb883456..20efb8a2a9 100644 --- a/md/UBERON/18/UBERON_3010818.md +++ b/md/UBERON/18/UBERON_3010818.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010818 * *Label* = hepatic peritoneum - * *Definition* = Peritoneum that surrounds the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:JMG] + * *Definition* = Peritoneum that surrounds the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:JMG ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_4000018.md b/md/UBERON/18/UBERON_4000018.md index ef40455c5d..bf4d02f2a6 100644 --- a/md/UBERON/18/UBERON_4000018.md +++ b/md/UBERON/18/UBERON_4000018.md @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011153 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/18/UBERON_4000118.md b/md/UBERON/18/UBERON_4000118.md index 325bb08171..3ff6f64acc 100644 --- a/md/UBERON/18/UBERON_4000118.md +++ b/md/UBERON/18/UBERON_4000118.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000118 * *Label* = cellular bone tissue - * *Definition* = Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Mineralized bone tissue that always includes non-terminally differentiated osteoblasts and osteocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_4200018.md b/md/UBERON/18/UBERON_4200018.md index 5923e6e972..4649e999fd 100644 --- a/md/UBERON/18/UBERON_4200018.md +++ b/md/UBERON/18/UBERON_4200018.md @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_4200118.md b/md/UBERON/18/UBERON_4200118.md index f2340b6ab9..b000844a4c 100644 --- a/md/UBERON/18/UBERON_4200118.md +++ b/md/UBERON/18/UBERON_4200118.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/18/UBERON_4300018.md b/md/UBERON/18/UBERON_4300018.md index caf765d159..c5171bdabe 100644 --- a/md/UBERON/18/UBERON_4300018.md +++ b/md/UBERON/18/UBERON_4300018.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0000019.md b/md/UBERON/19/UBERON_0000019.md index dd703aa625..870b20fbdb 100644 --- a/md/UBERON/19/UBERON_0000019.md +++ b/md/UBERON/19/UBERON_0000019.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000019 * *Label* = camera-type eye - * *Definition* = The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0043010[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0043010, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this ## Synonyms - * orbital part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54448] - * regio orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54448[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54448] + * orbital part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54448 ] + * regio orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54448, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54448 ] * vertebrate eye * camera-type eye plus associated structures - * eyes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000107[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * orbital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54448] + * eyes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000107, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * orbital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54448 ] ## Cross-references @@ -29,9 +29,9 @@ * OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA * SCTID:181143004 * TAO:0000107 - * UMLS:C0015392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1169] - * UMLS:C0015392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eye] - * UMLS:C1280202 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1169] + * UMLS:C0015392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1169 ] + * UMLS:C0015392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eye ] + * UMLS:C1280202 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1169 ] * VHOG:0000275 * XAO:0000179 * ZFA:0000107 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A cavitated compound organ that transduces light waves into neural signals.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0000119.md b/md/UBERON/19/UBERON_0000119.md index 0146962231..c4ab64710a 100644 --- a/md/UBERON/19/UBERON_0000119.md +++ b/md/UBERON/19/UBERON_0000119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000119 * *Label* = cell layer - * *Definition* = Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Portion of tissue, that consists of single layer of cells connected to each other by cell junctions. Examples: layer of glial cells; epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = consider adding to caro ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Single layer of a laminar structure, identified by different density, arrangement or size of cells and processes arranged in flattened layers or lamina. (CUMBO) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0000219.md b/md/UBERON/19/UBERON_0000219.md index af8b519a4f..019de8c674 100644 --- a/md/UBERON/19/UBERON_0000219.md +++ b/md/UBERON/19/UBERON_0000219.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000219 * *Label* = vertebral foramen of atlas - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlas_(anatomy)#Vertebral_foramen] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlas_(anatomy)#Vertebral_foramen ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 1](../../UBERON/92/UBERON_0001092.md) and [vertebral foramen](../../UBERON/31/UBERON_0001131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0000319.md b/md/UBERON/19/UBERON_0000319.md index abd0dc5509..59375e2bc8 100644 --- a/md/UBERON/19/UBERON_0000319.md +++ b/md/UBERON/19/UBERON_0000319.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000319 * *Label* = cytotrophoblast - * *Definition* = The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cytotrophoblast] + * *Definition* = The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cytotrophoblast ] * *Comment* = Editors note: todo - unify with EHDAA2, which distinguishes multiple types of cytotrophoblast ## Synonyms - * cellular trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83039] - * cytotrophoblastic cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * Langhans' layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000322] - * cytotrophoblastic cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83039] - * cytotrophoblastus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cytotrophoblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cellular trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83039 ] + * cytotrophoblastic cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * Langhans' layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000322 ] + * cytotrophoblastic cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83039 ] + * cytotrophoblastus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cytotrophoblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * layer of Langhans ## Cross-references @@ -24,7 +24,7 @@ * EMAPA:16067 * FMA:83039 * SCTID:308841008 - * UMLS:C0230960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cytotrophoblast] + * UMLS:C0230960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cytotrophoblast ] * VHOG:0000683 * Wikipedia:Cytotrophoblast * http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A derivative layer of the trophoblast, the cells of which retain their boundaries and contribute to the extraembryonic mesoderm [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.189, see_Kardong_KV][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0000919.md b/md/UBERON/19/UBERON_0000919.md index bb6320ba50..9aef051dff 100644 --- a/md/UBERON/19/UBERON_0000919.md +++ b/md/UBERON/19/UBERON_0000919.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000037 * *[consider](../../er/oboInOwl#consider.md)* = FMA:62962 * *[consider](../../er/oboInOwl#consider.md)* = GO:0005811 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000919 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_0001019.md b/md/UBERON/19/UBERON_0001019.md index ca642354ff..ac427b71fd 100644 --- a/md/UBERON/19/UBERON_0001019.md +++ b/md/UBERON/19/UBERON_0001019.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001019 * *Label* = nerve fasciculus - * *Definition* = A slender neuron projection bundle[FBbt]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system_fascicle] + * *Definition* = A slender neuron projection bundle[FBbt]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system_fascicle ] * *Comment* = TODO - invert specific? note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle' ## Synonyms * fasciculus - * nerve bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12235] - * nerve fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12235] - * neural fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12235] - * fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005101] + * nerve bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12235 ] + * nerve fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12235 ] + * neural fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12235 ] + * fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005101 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:12235 * NIF_GrossAnatomy:birnlex_872 * TGMA:0000088 - * UMLS:C1185741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fascicle] + * UMLS:C1185741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fascicle ] * Wikipedia:Nervous_system_fascicle * ncithesaurus:Fascicle @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001119.md b/md/UBERON/19/UBERON_0001119.md index 7f9e91c782..efd7625960 100644 --- a/md/UBERON/19/UBERON_0001119.md +++ b/md/UBERON/19/UBERON_0001119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001119 * *Label* = right lobe of thyroid gland - * *Definition* = A lobe of thyroid gland that is in the right side of a thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobe of thyroid gland that is in the right side of a thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -18,7 +18,7 @@ * FMA:13368 * MA:0000729 * SCTID:170482008 - * UMLS:C0229581 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Thyroid_Gland_Lobe] + * UMLS:C0229581 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Thyroid_Gland_Lobe ] * VHOG:0000733 * ncithesaurus:Right_Thyroid_Gland_Lobe @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [thyroid gland](../../UBERON/46/UBERON_0002046.md) and [lobe of thyroid gland](../../UBERON/18/UBERON_0001118.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001219.md b/md/UBERON/19/UBERON_0001219.md index ef73a8a3a0..157986a7de 100644 --- a/md/UBERON/19/UBERON_0001219.md +++ b/md/UBERON/19/UBERON_0001219.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001219 * *Label* = ileocolic vein - * *Definition* = The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocolic_vein] + * *Definition* = The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocolic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena ileocolica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocolic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena ileocolica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocolic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15408 * MA:0002141 * SCTID:36208008 - * UMLS:C0226744 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ileocolic_Vein] + * UMLS:C0226744 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ileocolic_Vein ] * Wikipedia:Ileocolic_vein * http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png * ncithesaurus:Ileocolic_Vein @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001319.md b/md/UBERON/19/UBERON_0001319.md index 64c6506da9..591603fe2c 100644 --- a/md/UBERON/19/UBERON_0001319.md +++ b/md/UBERON/19/UBERON_0001319.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001319 * *Label* = vaginal vein - * *Definition* = The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_venous_plexus] + * *Definition* = The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_venous_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vagina vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * vagina vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001419.md b/md/UBERON/19/UBERON_0001419.md index 0bbe7b9f93..5d64f57933 100644 --- a/md/UBERON/19/UBERON_0001419.md +++ b/md/UBERON/19/UBERON_0001419.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001419 * *Label* = skin of limb - * *Definition* = A zone of skin that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * limb skin - * limb zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * limb zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:23100 * MA:0000694 * SCTID:314403009 - * UMLS:C1282135 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Extremity] + * UMLS:C1282135 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Extremity ] * ncithesaurus:Skin_of_the_Extremity ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001519.md b/md/UBERON/19/UBERON_0001519.md index 16088769f5..1685c5adb0 100644 --- a/md/UBERON/19/UBERON_0001519.md +++ b/md/UBERON/19/UBERON_0001519.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001519 * *Label* = skin of manus - * *Definition* = A zone of skin that is part of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * hand skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000630] + * hand skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000630 ] * manus skin - * skin of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38295] - * skin of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * skin of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38295 ] + * skin of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:38295 * MA:0000630 * SCTID:181527003 - * UMLS:C0222224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Skin] + * UMLS:C0222224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Skin ] * ncithesaurus:Hand_Skin ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001619.md b/md/UBERON/19/UBERON_0001619.md index 3b69720dcd..92d69cb80d 100644 --- a/md/UBERON/19/UBERON_0001619.md +++ b/md/UBERON/19/UBERON_0001619.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001619 * *Label* = ophthalmic artery - * *Definition* = The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_artery] + * *Definition* = The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_artery ] ## Synonyms - * arteria ophthalmica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * opthalmic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_artery] + * arteria ophthalmica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * opthalmic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_artery ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.231.114.622 * OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA * SCTID:181310005 - * UMLS:C0029078 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Opthalmic_Artery] + * UMLS:C0029078 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Opthalmic_Artery ] * Wikipedia:Ophthalmic_artery * XAO:0000368 * http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of internal carotid (AAO:0010219)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001719.md b/md/UBERON/19/UBERON_0001719.md index 47f79b5550..e5dd639361 100644 --- a/md/UBERON/19/UBERON_0001719.md +++ b/md/UBERON/19/UBERON_0001719.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001719 * *Label* = nucleus ambiguus - * *Definition* = The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_ambiguus] + * *Definition* = The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_ambiguus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ambiguus nucleus - * Amb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2650[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ambiguous nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:765] - * nucleus innominatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:765[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Amb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2650, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ambiguous nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:765 ] + * nucleus innominatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:765, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,11 +24,11 @@ * FMA:54588 * MA:0001050 * NIF_GrossAnatomy:birnlex_2650 - * NeuroNames:765 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2650] + * NeuroNames:765 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2650 ] * SCTID:280184006 - * UMLS:C0152400 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2650] - * UMLS:C0152400 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nucleus_Ambiguus] - * UMLS:C1281211 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2650] + * UMLS:C0152400 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2650 ] + * UMLS:C0152400 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nucleus_Ambiguus ] + * UMLS:C1281211 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2650 ] * Wikipedia:Nucleus_ambiguus * http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001819.md b/md/UBERON/19/UBERON_0001819.md index bbe69ccfe1..b02199ec81 100644 --- a/md/UBERON/19/UBERON_0001819.md +++ b/md/UBERON/19/UBERON_0001819.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001819 * *Label* = palpebral fissure - * *Definition* = Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palpebral_fissure] + * *Definition* = Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palpebral_fissure ] ## Synonyms - * rima palpebrarum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palpebral_fissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * rima palpebrarum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palpebral_fissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,8 +27,8 @@ * [orifice](../../UBERON/61/UBERON_0000161.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [inner canthus](../../UBERON/11/UBERON_0005611.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [outer canthus](../../UBERON/26/UBERON_0006726.md) * [adjacent to](../../RO/20/RO_0002220.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) * [adjacent to](../../RO/20/RO_0002220.md) some [lower eyelid](../../UBERON/13/UBERON_0001713.md) @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0001919.md b/md/UBERON/19/UBERON_0001919.md index e24330ff51..a1dd49e70e 100644 --- a/md/UBERON/19/UBERON_0001919.md +++ b/md/UBERON/19/UBERON_0001919.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001919 * *Label* = endothelium of vein - * *Definition* = An endothelium that is part of a vein [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a vein [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * vein endothelium * venous endothelium - * veinous endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001216] + * veinous endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001216 ] ## Cross-references @@ -18,7 +18,7 @@ * BTO:0004756 * FMA:62118 * MA:0000712 - * UMLS:C1179027 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vein_Endothelium] + * UMLS:C1179027 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vein_Endothelium ] * VHOG:0001216 * XAO:0000358 * ncithesaurus:Vein_Endothelium @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002019.md b/md/UBERON/19/UBERON_0002019.md index ae64796024..01c044708d 100644 --- a/md/UBERON/19/UBERON_0002019.md +++ b/md/UBERON/19/UBERON_0002019.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002019 * *Label* = accessory XI nerve - * *Definition* = a nerve that controls specific muscles of the shoulder and neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_accessory_nerve] + * *Definition* = a nerve that controls specific muscles of the shoulder and neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_accessory_nerve ] * *Comment* = Taxon notes: In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO] ## Synonyms * Willis' nerve - * accessory XI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000106] + * accessory XI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000106 ] * accessory XI nerve * accessory nerve * accessory nerve [XI] * cervical accessory nerve - * cranial nerve XI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_812] - * eleventh cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_812] - * nervus accessorius [xi] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6720[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars spinalis nervus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6720[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinal accessory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6720] + * cranial nerve XI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_812 ] + * eleventh cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_812 ] + * nervus accessorius [xi] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6720, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars spinalis nervus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6720, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinal accessory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6720 ] * spinal accessory nerve tree * spinal part of accessory nerve - * CN-XI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000699] - * accessory spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:XIn] + * CN-XI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000699 ] + * accessory spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:XIn ] ## Cross-references @@ -41,9 +41,9 @@ * NeuroNames:2085 * OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA * SCTID:362469008 - * UMLS:C0000905 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_812] - * UMLS:C0000905 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Accessory_Nerve] - * UMLS:C1305777 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_812] + * UMLS:C0000905 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_812 ] + * UMLS:C0000905 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Accessory_Nerve ] + * UMLS:C1305777 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_812 ] * VHOG:0000699 * Wikipedia:Spinal_accessory_nerve * XAO:0004214 @@ -70,8 +70,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small motor nerve which innervates a single pectoral suspensory muscle, the m. cucullaris.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002119.md b/md/UBERON/19/UBERON_0002119.md index c1208fb521..0c68e85577 100644 --- a/md/UBERON/19/UBERON_0002119.md +++ b/md/UBERON/19/UBERON_0002119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002119 * *Label* = left ovary - * *Definition* = An ovary that is part of a left side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ovary that is part of a left side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: In some elasmobranchs, the left ovary does not mature, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals] ## Synonyms @@ -14,7 +14,7 @@ * FMA:7214 * MA:0001704 * SCTID:280124008 - * UMLS:C0227874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Ovary] + * UMLS:C0227874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Ovary ] * ncithesaurus:Left_Ovary ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [female gonad](../../UBERON/92/UBERON_0000992.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002219.md b/md/UBERON/19/UBERON_0002219.md index 4d7840b4c0..3eda2efe9a 100644 --- a/md/UBERON/19/UBERON_0002219.md +++ b/md/UBERON/19/UBERON_0002219.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002219 * *Label* = subfornical organ - * *Definition* = Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subfornical_organ] + * *Definition* = Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Monro in the third ventricle (adapted from Wikipedia via NIF). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subfornical_organ ] * *Comment* = Function notes: induces drinking behavior after stimulation with angiotensin II[MESH]. ## Synonyms - * organum subfornicale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subfornical_organ[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organum subfornicale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subfornical_organ, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002319.md b/md/UBERON/19/UBERON_0002319.md index b2df45ffb8..db2b663909 100644 --- a/md/UBERON/19/UBERON_0002319.md +++ b/md/UBERON/19/UBERON_0002319.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002319 * *Label* = mesangium - * *Definition* = inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesangium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?group_id=76834&atid=974957] + * *Definition* = inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesangium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?group_id=76834&atid=974957 ] * *Comment* = WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished. ## Synonyms @@ -16,7 +16,7 @@ * FMA:84139 * MA:0002617 * MESH:A05.810.453.736.520.380 - * UMLS:C0017655 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesangium] + * UMLS:C0017655 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesangium ] * Wikipedia:Mesangium * ncithesaurus:Mesangium @@ -42,8 +42,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesangial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002419.md b/md/UBERON/19/UBERON_0002419.md index ed7578de1f..869caeacfa 100644 --- a/md/UBERON/19/UBERON_0002419.md +++ b/md/UBERON/19/UBERON_0002419.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002419 * *Label* = skin gland - * *Definition* = A gland that is part of a skin of body [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a skin of body [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = check FMA, use plural for now as general class not there ## Synonyms - * glandulae cutis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71878[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of skin glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71878] - * skin glands [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * skin glands set [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * glandulae cutis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71878, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of skin glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71878 ] + * skin glands [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * skin glands set [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skin of body](../../UBERON/97/UBERON_0002097.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002519.md b/md/UBERON/19/UBERON_0002519.md index 1a7e0d50c5..5c2505c20a 100644 --- a/md/UBERON/19/UBERON_0002519.md +++ b/md/UBERON/19/UBERON_0002519.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002519 * *Label* = otolithic membrane - * *Definition* = a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otolithic_membrane] + * *Definition* = a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otolithic_membrane ] ## Synonyms - * membrana statoconiorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75573[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * otolith layer of statoconial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75573] + * membrana statoconiorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75573, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * otolith layer of statoconial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75573 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002619.md b/md/UBERON/19/UBERON_0002619.md index d42deb42df..0d3e598018 100644 --- a/md/UBERON/19/UBERON_0002619.md +++ b/md/UBERON/19/UBERON_0002619.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002619 * *Label* = regional part of cerebral cortex - * *Definition* = A regional part of brain that is part of a cerebral cortex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a cerebral cortex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check MA term ## Synonyms * cerebral cortex part - * neocortex region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000187] - * region of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242193] - * segment of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1173] - * central canal, spinal cord/medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:C] - * cerebral cortex region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000187] + * neocortex region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000187 ] + * region of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242193 ] + * segment of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1173 ] + * central canal, spinal cord/medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:C ] + * cerebral cortex region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000187 ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebral cortex](../../UBERON/56/UBERON_0000956.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003208 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002719.md b/md/UBERON/19/UBERON_0002719.md index 6b9d5183c6..5eea815921 100644 --- a/md/UBERON/19/UBERON_0002719.md +++ b/md/UBERON/19/UBERON_0002719.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002719 * *Label* = spino-olivary tract - * *Definition* = The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spino-olivary_tract] + * *Definition* = The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spino-olivary_tract ] ## Synonyms - * helweg's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72643] - * spino-olivary pathways [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:809] - * spino-olivary tracts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:809] - * tractus spino-olivaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:809[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus spinoolivaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spino-olivary_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * helweg's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72643 ] + * spino-olivary pathways [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:809 ] + * spino-olivary tracts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:809 ] + * tractus spino-olivaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:809, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus spinoolivaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spino-olivary_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:spo * FMA:72643 * NIF_GrossAnatomy:birnlex_1484 - * NeuroNames:809 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1484] + * NeuroNames:809 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1484 ] * SCTID:362607001 - * UMLS:C0175562 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1484] + * UMLS:C0175562 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1484 ] * Wikipedia:Spino-olivary_tract ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002819.md b/md/UBERON/19/UBERON_0002819.md index ca09fa1454..2c7ba3286a 100644 --- a/md/UBERON/19/UBERON_0002819.md +++ b/md/UBERON/19/UBERON_0002819.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002819 * *Label* = apex of cochlea - * *Definition* = The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apex_of_cochlea] + * *Definition* = The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apex_of_cochlea ] ## Synonyms - * apex of cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2555] - * apex of the cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2555] - * cochlea apex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75641] - * cupula of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75641] - * cupula of the cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2557] + * apex of cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2555 ] + * apex of the cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2555 ] + * cochlea apex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75641 ] + * cupula of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75641 ] + * cupula of the cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2557 ] ## Cross-references @@ -21,9 +21,9 @@ * NIF_GrossAnatomy:birnlex_2557 * SCTID:279776002 * SCTID:279777006 - * UMLS:C0458764 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2557] - * UMLS:C0458765 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2555] - * UMLS:C1184827 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2523] + * UMLS:C0458764 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2557 ] + * UMLS:C0458765 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2555 ] + * UMLS:C1184827 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2523 ] * Wikipedia:Apex_of_cochlea ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0002919.md b/md/UBERON/19/UBERON_0002919.md index 5b300f3abd..d5eb66c6d5 100644 --- a/md/UBERON/19/UBERON_0002919.md +++ b/md/UBERON/19/UBERON_0002919.md @@ -6,18 +6,18 @@ ## Synonyms - * paraolfactory sulci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4039[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * paraolfactory sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83744] - * sulcus parolfactorius anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4039] - * aps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4039[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * paraolfactory sulci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4039, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * paraolfactory sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83744 ] + * sulcus parolfactorius anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4039 ] + * aps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4039, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:aps * FMA:83744 * NIF_GrossAnatomy:birnlex_4039 - * NeuroNames:37 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4039] - * UMLS:C0262196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4039] + * NeuroNames:37 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4039 ] + * UMLS:C0262196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4039 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003019.md b/md/UBERON/19/UBERON_0003019.md index 2fdd0d45a2..74fb0b2e62 100644 --- a/md/UBERON/19/UBERON_0003019.md +++ b/md/UBERON/19/UBERON_0003019.md @@ -6,19 +6,19 @@ ## Synonyms - * nucleus lateralis intermedius lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus posteroventralis oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus ventralis intermedius (dewulf) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus ventralis intermedius (walker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus ventralis intermedius thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus ventralis posterior lateralis, pars oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] - * nucleus ventrointermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_918] + * nucleus lateralis intermedius lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus posteroventralis oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus ventralis intermedius (dewulf) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus ventralis intermedius (walker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus ventralis intermedius thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus ventralis posterior lateralis, pars oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] + * nucleus ventrointermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_918 ] * ventral part of ventral lateral posterior nucleus (jones) - * ventral posterolateral nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62205] - * ventral posterolateral thalamic nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62205] - * VPLO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_918[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * oral part of the ventral posterolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:345] - * ventrointermedius nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VIM] + * ventral posterolateral nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62205 ] + * ventral posterolateral thalamic nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62205 ] + * VPLO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_918, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * oral part of the ventral posterolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:345 ] + * ventrointermedius nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VIM ] ## Cross-references @@ -26,8 +26,8 @@ * BAMS:VPLO * FMA:62205 * NIF_GrossAnatomy:birnlex_918 - * NeuroNames:345 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_918] - * UMLS:C0175286 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_918] + * NeuroNames:345 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_918 ] + * UMLS:C0175286 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_918 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003119.md b/md/UBERON/19/UBERON_0003119.md index 388a66ea79..180f0c9963 100644 --- a/md/UBERON/19/UBERON_0003119.md +++ b/md/UBERON/19/UBERON_0003119.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003119 * *Label* = aortic arch 2 - * *Definition* = the vessels formed within the second pair of branchial arches in embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010356] + * *Definition* = the vessels formed within the second pair of branchial arches in embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010356 ] ## Synonyms - * 2nd arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000051] - * AA2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005006] - * hyoid aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005006] - * second aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000343] + * 2nd arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000051 ] + * AA2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005006 ] + * hyoid aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005006 ] + * second aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000343 ] * second branchial arch artery - * 2nd aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16686] - * 2nd branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16686] - * 2nd pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16686] + * 2nd aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16686 ] + * 2nd branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16686 ] + * 2nd pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16686 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The second in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 2 that is part of hyoid arch.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004372 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003219.md b/md/UBERON/19/UBERON_0003219.md index d56865204b..8cd374c5b1 100644 --- a/md/UBERON/19/UBERON_0003219.md +++ b/md/UBERON/19/UBERON_0003219.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003219 * *Label* = shell septum - * *Definition* = Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0080126[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_(marine_biology)] + * *Definition* = Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0080126, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_(marine_biology) ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [shell](../../UBERON/12/UBERON_0006612.md) and [septum](../../UBERON/37/UBERON_0003037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003319.md b/md/UBERON/19/UBERON_0003319.md index 7c3100665e..8ce273b7ec 100644 --- a/md/UBERON/19/UBERON_0003319.md +++ b/md/UBERON/19/UBERON_0003319.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003319 * *Label* = mesenchyme of carpal region - * *Definition* = Mesenchyme of the carpal region that conributes to the carpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Mesenchyme of the carpal region that conributes to the carpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * carpal region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * carpus mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wrist mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * carpus mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wrist mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003419.md b/md/UBERON/19/UBERON_0003419.md index 7afcf6cd72..319427158d 100644 --- a/md/UBERON/19/UBERON_0003419.md +++ b/md/UBERON/19/UBERON_0003419.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003419 * *Label* = mesenchyme of parotid - * *Definition* = Mesenchyme that is part of a parotid gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a parotid gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of parotid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of parotid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parotid gland](../../UBERON/31/UBERON_0001831.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003519.md b/md/UBERON/19/UBERON_0003519.md index 59e6172e55..b6f6624837 100644 --- a/md/UBERON/19/UBERON_0003519.md +++ b/md/UBERON/19/UBERON_0003519.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003519 * *Label* = thoracic cavity blood vessel - * *Definition* = A blood vessel that is part of a thoracic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a thoracic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of chest blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of chest blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003619.md b/md/UBERON/19/UBERON_0003619.md index 17f8519903..be69749684 100644 --- a/md/UBERON/19/UBERON_0003619.md +++ b/md/UBERON/19/UBERON_0003619.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003619 * *Label* = aorta tunica intima - * *Definition* = the innermost layer of the aorta, containing the endothelium and an inner elastic membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009872] + * *Definition* = the innermost layer of the aorta, containing the endothelium and an inner elastic membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009872 ] ## Synonyms - * adult aorta tunica intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta tunica intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree tunica intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica intima of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica intima of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica intima of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica intima of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult aorta tunica intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta tunica intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree tunica intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica intima of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica intima of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica intima of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica intima of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) and [tunica intima](../../UBERON/23/UBERON_0002523.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003719.md b/md/UBERON/19/UBERON_0003719.md index f0ffd34e3b..7126f01a52 100644 --- a/md/UBERON/19/UBERON_0003719.md +++ b/md/UBERON/19/UBERON_0003719.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003719 * *Label* = Pacinian corpuscle - * *Definition* = any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000988[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamellar_corpuscle] + * *Definition* = any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000988, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamellar_corpuscle ] * *Comment* = AO notes: FMA treats pacinia and G-M as distinct ## Synonyms - * Pacinian corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamellar_corpuscle] - * corpuscle of golgi-mazzoni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83609] - * corpusculum lamellosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamellar_corpuscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * golgi-mazzoni corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83609] - * lamellar corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamellar_corpuscle] - * golgi mazzoni corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:817] - * golgi-mazzoni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * golgi-mazzoni corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * lamellated corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * pacinian body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * pacinian corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * pacinian corpuscle end-organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * pacinian corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * vater-pacini corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] - * vater-pacini corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pacinian_corpuscle] + * Pacinian corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamellar_corpuscle ] + * corpuscle of golgi-mazzoni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83609 ] + * corpusculum lamellosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamellar_corpuscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * golgi-mazzoni corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83609 ] + * lamellar corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamellar_corpuscle ] + * golgi mazzoni corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:817 ] + * golgi-mazzoni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * golgi-mazzoni corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * lamellated corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * pacinian body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * pacinian corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * pacinian corpuscle end-organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * pacinian corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * vater-pacini corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] + * vater-pacini corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pacinian_corpuscle ] ## Cross-references @@ -58,8 +58,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003717 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0003919.md b/md/UBERON/19/UBERON_0003919.md index 926bdc6d3c..704722fcbe 100644 --- a/md/UBERON/19/UBERON_0003919.md +++ b/md/UBERON/19/UBERON_0003919.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003919 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_0004019.md b/md/UBERON/19/UBERON_0004019.md index bed18aa442..cda09e4b58 100644 --- a/md/UBERON/19/UBERON_0004019.md +++ b/md/UBERON/19/UBERON_0004019.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004019 * *Label* = baroreceptor - * *Definition* = the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004118] + * *Definition* = the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004118 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004119.md b/md/UBERON/19/UBERON_0004119.md index ffc16abcbc..6f4a6c905d 100644 --- a/md/UBERON/19/UBERON_0004119.md +++ b/md/UBERON/19/UBERON_0004119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004119 * *Label* = endoderm-derived structure - * *Definition* = An anatomical structure that develops (entirely or partially) from the endoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops (entirely or partially) from the endoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004219.md b/md/UBERON/19/UBERON_0004219.md index 7dfd7ed43b..decd7bda7f 100644 --- a/md/UBERON/19/UBERON_0004219.md +++ b/md/UBERON/19/UBERON_0004219.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004219 * *Label* = urethra smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethral smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001691] + * involuntary muscle of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethral smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001691 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004319.md b/md/UBERON/19/UBERON_0004319.md index 1b4856f837..4a6f124080 100644 --- a/md/UBERON/19/UBERON_0004319.md +++ b/md/UBERON/19/UBERON_0004319.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004319 * *Label* = distal phalanx of pedal digit 5 - * *Definition* = A distal phalanx that is part of a foot digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a foot digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th toe distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32631] - * distal phalanx of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32631] - * distal phalanx of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32631] - * distal phalanx of the 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth distal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32631] - * foot digit 5 distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5th toe distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32631 ] + * distal phalanx of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32631 ] + * distal phalanx of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32631 ] + * distal phalanx of the 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth distal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32631 ] + * foot digit 5 distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004419.md b/md/UBERON/19/UBERON_0004419.md index 8fc9ecf469..36ef0f086f 100644 --- a/md/UBERON/19/UBERON_0004419.md +++ b/md/UBERON/19/UBERON_0004419.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004419 * *Label* = proximal epiphysis of phalanx of manual digit 3 - * *Definition* = A proximal epiphysis that is part of a manual digit 3 phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a manual digit 3 phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37510] - * base of phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37510] - * base of phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37510] - * base of phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37510] + * basal epiphysis of phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37510 ] + * base of phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37510 ] + * base of phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37510 ] + * base of phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37510 ] * proximal epiphysis of phalanx of manual digit 3 - * proximal epiphysis of phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37510[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * proximal epiphysis of phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37510, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3 phalanx](../../UBERON/37/UBERON_0003637.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004519.md b/md/UBERON/19/UBERON_0004519.md index 8210d676ac..8883a8bffd 100644 --- a/md/UBERON/19/UBERON_0004519.md +++ b/md/UBERON/19/UBERON_0004519.md @@ -6,7 +6,7 @@ ## Synonyms - * anal triangle muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77304] + * anal triangle muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77304 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal part of perineum](../../UBERON/67/UBERON_0006867.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004619.md b/md/UBERON/19/UBERON_0004619.md index 1cc5148430..4a22a5888f 100644 --- a/md/UBERON/19/UBERON_0004619.md +++ b/md/UBERON/19/UBERON_0004619.md @@ -7,8 +7,8 @@ ## Synonyms - * L3 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13074] - * third lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13074] + * L3 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13074 ] + * third lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13074 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:13074 * MA:0001430 * SCTID:181843001 - * UMLS:C0223522 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:L3_Vertebra] + * UMLS:C0223522 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:L3_Vertebra ] * ncithesaurus:L3_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004719.md b/md/UBERON/19/UBERON_0004719.md index 262ae44f9c..2e54c69491 100644 --- a/md/UBERON/19/UBERON_0004719.md +++ b/md/UBERON/19/UBERON_0004719.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004719 * *Label* = arcuate vein - * *Definition* = The arcuate vein is a vessel of the renal circulation. It is located at the border of the renal cortex and renal medulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_vein] + * *Definition* = The arcuate vein is a vessel of the renal circulation. It is located at the border of the renal cortex and renal medulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_vein ] ## Synonyms - * arcuate veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_vein] - * venae arcuatae renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arcuate veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_vein ] + * venae arcuatae renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004819.md b/md/UBERON/19/UBERON_0004819.md index 2815d323c1..93eb1fe156 100644 --- a/md/UBERON/19/UBERON_0004819.md +++ b/md/UBERON/19/UBERON_0004819.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004819 * *Label* = kidney epithelium - * *Definition* = An epithelium that is part of a kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0004919.md b/md/UBERON/19/UBERON_0004919.md index f5e1776f83..891de8edd8 100644 --- a/md/UBERON/19/UBERON_0004919.md +++ b/md/UBERON/19/UBERON_0004919.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004919 * *Label* = external urethral sphincter - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_male_urethra] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_male_urethra ] ## Synonyms @@ -11,17 +11,17 @@ * external sphincter muscle of urethra * external sphincter of urethra * external urethral sphincter muscle - * m. urethralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9879823] - * urethralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002401[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9879823] - * urethralis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9879823] - * musculus sphincter urethrae membranaceae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_male_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * m. urethralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9879823 ] + * urethralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002401, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9879823 ] + * urethralis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9879823 ] + * musculus sphincter urethrae membranaceae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_male_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:85274 * MA:0002401 * SCTID:19101001 - * UMLS:C1710586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urethralis] + * UMLS:C1710586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urethralis ] * http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png * ncithesaurus:Urethralis @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005019.md b/md/UBERON/19/UBERON_0005019.md index 9efb8c8e87..99b9030abf 100644 --- a/md/UBERON/19/UBERON_0005019.md +++ b/md/UBERON/19/UBERON_0005019.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005019 * *Label* = mucosa of palate - * *Definition* = A mucosa that is part of a palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of oral roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oral roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of roof of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of roof of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oral roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of roof of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral roof mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral roof mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral roof mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral roof organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oral roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of roof of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palate mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palate mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palate mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palate organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof of mouth mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof of mouth mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof of mouth mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof of mouth organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of oral roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oral roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of roof of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of roof of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oral roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of roof of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral roof mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral roof mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral roof mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral roof organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oral roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of roof of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palate mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palate mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palate mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palate organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof of mouth mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof of mouth mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof of mouth mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof of mouth organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary palate](../../UBERON/16/UBERON_0001716.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005119.md b/md/UBERON/19/UBERON_0005119.md index adf857625e..399d47b9a5 100644 --- a/md/UBERON/19/UBERON_0005119.md +++ b/md/UBERON/19/UBERON_0005119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005119 * *Label* = metanephric glomerular mesangium - * *Definition* = The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072223] + * *Definition* = The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072223 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular mesangium](../../UBERON/20/UBERON_0002320.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005219.md b/md/UBERON/19/UBERON_0005219.md index 9b03b8ebaf..6c5ea9ec77 100644 --- a/md/UBERON/19/UBERON_0005219.md +++ b/md/UBERON/19/UBERON_0005219.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005219 * *Label* = hindbrain subarachnoid space - * *Definition* = A subarachnoid space that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subarachnoid space that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * subarachnoid space hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001303] - * subarachnoid space rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001303] + * subarachnoid space hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001303 ] + * subarachnoid space rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001303 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [subarachnoid space](../../UBERON/15/UBERON_0000315.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subarachnoid space that is part of the hindbrain. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005319.md b/md/UBERON/19/UBERON_0005319.md index f0c0346891..d0b73f51eb 100644 --- a/md/UBERON/19/UBERON_0005319.md +++ b/md/UBERON/19/UBERON_0005319.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005319 * *Label* = mesonephric collecting duct - * *Definition* = The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061211] + * *Definition* = The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061211 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005419.md b/md/UBERON/19/UBERON_0005419.md index 0a766cbad3..e8f28e422f 100644 --- a/md/UBERON/19/UBERON_0005419.md +++ b/md/UBERON/19/UBERON_0005419.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005419 * *Label* = pectoral appendage bud - * *Definition* = A limb bud that develops into a forelimb or pectoral fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb bud that develops into a forelimb or pectoral fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = at this time we have no need to name a more specific 'pectoral fin bud' class, but we may in future ## Synonyms - * forelimb - pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001754] - * pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000141] - * pectoral fin buds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000141[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * forelimb - pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001754 ] + * pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000141 ] + * pectoral fin buds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000141, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) and [paired limb/fin bud](../../UBERON/57/UBERON_0004357.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fin bud that develops into the pectoral fin.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = While the skeletons of teleost pectoral fins and tetrapod forelimbs are homologous at the level of endoskeletal radials, teleosts and tetrapods do not share homologous skeletal elements at the level of 'individuated' pro-, meso-, and metapterygia. Among osteichthyans, only basal actinopterygians retain the full complement of elements present in non-osteichthyan gnathostomes.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005519.md b/md/UBERON/19/UBERON_0005519.md index a5f556beec..551cd2915c 100644 --- a/md/UBERON/19/UBERON_0005519.md +++ b/md/UBERON/19/UBERON_0005519.md @@ -6,7 +6,7 @@ ## Synonyms - * r6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000069] + * r6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000069 ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 6 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005619.md b/md/UBERON/19/UBERON_0005619.md index 21ac507df9..c4b24a0be1 100644 --- a/md/UBERON/19/UBERON_0005619.md +++ b/md/UBERON/19/UBERON_0005619.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005619 * *Label* = secondary palatal shelf - * *Definition* = the outgrowths of the embryonic maxillary prominences that come together during prenatal development to form the secondary palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/palatal+shelves[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.indiana.edu/~anat550/hnanim/face/face.html] + * *Definition* = the outgrowths of the embryonic maxillary prominences that come together during prenatal development to form the secondary palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/palatal+shelves, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.indiana.edu/~anat550/hnanim/face/face.html ] * *Comment* = Consider splitting into embryonic/fully formed ## Synonyms - * lateral palatine process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/palatal+shelf] - * palatal shelf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001581] + * lateral palatine process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/palatal+shelf ] + * palatal shelf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001581 ] * secondary palatal shelf - * palatal shelves [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * palatine shelf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000378] + * palatal shelves [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * palatine shelf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000378 ] ## Cross-references @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outgrowths of the embryonic maxillae that come together during prenatal development to form the secondary palate. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005719.md b/md/UBERON/19/UBERON_0005719.md index 759a180eb2..49853e6f96 100644 --- a/md/UBERON/19/UBERON_0005719.md +++ b/md/UBERON/19/UBERON_0005719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005719 * *Label* = footplate apical ectodermal ridge - * *Definition* = An apical ectodermal ridge that is part of a footplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An apical ectodermal ridge that is part of a footplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apical ectodermal ridge](../../UBERON/56/UBERON_0004356.md) and [part_of](../../BFO/50/BFO_0000050.md) some [footplate](../../UBERON/71/UBERON_0006871.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005819.md b/md/UBERON/19/UBERON_0005819.md index 1b6ae3d9cf..465290c484 100644 --- a/md/UBERON/19/UBERON_0005819.md +++ b/md/UBERON/19/UBERON_0005819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005819 * *Label* = cervical flexure - * *Definition* = A ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000913] + * *Definition* = A ventrally concave flexure of the embryonic brain occurring at the junction of hindbrain and spinal cord[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000913 ] * *Comment* = Taxon notes: In humans develops by the 5th week of gestation[WP] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0005919.md b/md/UBERON/19/UBERON_0005919.md index 79a618042d..eecbb47130 100644 --- a/md/UBERON/19/UBERON_0005919.md +++ b/md/UBERON/19/UBERON_0005919.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005919 * *Label* = supreme nasal concha - * *Definition* = a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha] + * *Definition* = a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha ] ## Synonyms - * concha nasi suprema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57457[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * highest nasal concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57457] - * supreme nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57457] - * supreme turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57457] + * concha nasi suprema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57457, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * highest nasal concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57457 ] + * supreme nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57457 ] + * supreme turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57457 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006019.md b/md/UBERON/19/UBERON_0006019.md index e251f5788c..ddef3d4cf9 100644 --- a/md/UBERON/19/UBERON_0006019.md +++ b/md/UBERON/19/UBERON_0006019.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006019 * *Label* = interdigital region between digits 2 and 3 - * *Definition* = An interdigital region that adjacent_to a digit 2 and adjacent_to a digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a digit 2 and adjacent_to a digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) and [adjacent to](../../RO/20/RO_0002220.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006119.md b/md/UBERON/19/UBERON_0006119.md index e9cf7828d9..77066b76dc 100644 --- a/md/UBERON/19/UBERON_0006119.md +++ b/md/UBERON/19/UBERON_0006119.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006119 * *Label* = subbrachial nucleus - * *Definition* = A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005003] + * *Definition* = A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005003 ] * *Comment* = Candidate definition (refers specifically to mouse): "A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001)." [NIF_GrossAnatomy:nlx_anat_1005003] ## Synonyms - * subbrachial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005003] - * tegmental area of tsai [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77494] + * subbrachial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005003 ] + * tegmental area of tsai [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77494 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006219.md b/md/UBERON/19/UBERON_0006219.md index d754e985f2..9ae5579498 100644 --- a/md/UBERON/19/UBERON_0006219.md +++ b/md/UBERON/19/UBERON_0006219.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006319.md b/md/UBERON/19/UBERON_0006319.md index 4ca6d5845a..28e4d1b0ce 100644 --- a/md/UBERON/19/UBERON_0006319.md +++ b/md/UBERON/19/UBERON_0006319.md @@ -6,8 +6,8 @@ ## Synonyms - * spinal reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73909] - * reticular nucleus of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RS] + * spinal reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73909 ] + * reticular nucleus of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RS ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006719.md b/md/UBERON/19/UBERON_0006719.md index 9889f38124..1d8325e59b 100644 --- a/md/UBERON/19/UBERON_0006719.md +++ b/md/UBERON/19/UBERON_0006719.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006719 * *Label* = lateral pterygoid muscle - * *Definition* = The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] + * *Definition* = The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] ## Synonyms - * musculus pterygoides lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49015] - * pterygoideus lateral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * pterygoideus lateral muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * lateral pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49015] - * pterygoid lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002360] - * external pterygoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * lateral pteregoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * lateral pteregoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * lateral pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * m. pterygoideus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * m. pterygoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus pterygoideus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus pterygoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoideus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] - * pterygoideus externus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_muscle] + * musculus pterygoides lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49015 ] + * pterygoideus lateral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * pterygoideus lateral muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * lateral pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49015 ] + * pterygoid lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002360 ] + * external pterygoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * lateral pteregoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * lateral pteregoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * lateral pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * m. pterygoideus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * m. pterygoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus pterygoideus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus pterygoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoideus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] + * pterygoideus externus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_muscle ] ## Cross-references @@ -29,7 +29,7 @@ * FMA:49015 * MA:0002360 * SCTID:244772005 - * UMLS:C1517045 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Pterygoid_Muscle] + * UMLS:C1517045 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Pterygoid_Muscle ] * Wikipedia:Lateral_pterygoid_muscle * http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png * ncithesaurus:External_Pterygoid_Muscle @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and TMJ capsule, and the cranial base.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0006919.md b/md/UBERON/19/UBERON_0006919.md index 7eb89d5c33..62a4b726ba 100644 --- a/md/UBERON/19/UBERON_0006919.md +++ b/md/UBERON/19/UBERON_0006919.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006919 * *Label* = tongue squamous epithelium - * *Definition* = A squamous epithelium that is part of a tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A squamous epithelium that is part of a tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note this is a singleton subclass of tongue epithelium in MA ## Synonyms - * squamous epithelium of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * squamous epithelium of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [squamous epithelium](../../UBERON/14/UBERON_0006914.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0007119.md b/md/UBERON/19/UBERON_0007119.md index cde2c9cbaa..a46ec553d0 100644 --- a/md/UBERON/19/UBERON_0007119.md +++ b/md/UBERON/19/UBERON_0007119.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007119 * *Label* = neck of femur - * *Definition* = The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_neck] + * *Definition* = The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_neck ] ## Synonyms - * femoral neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42385] - * collum femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_neck[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * femur neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_neck] - * neck of the femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_neck] + * femoral neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42385 ] + * collum femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_neck, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * femur neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_neck ] + * neck of the femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_neck ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:201 * MESH:A02.835.232.500.247.510 * SCTID:361792007 - * UMLS:C0015815 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Femoral_Neck] + * UMLS:C0015815 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Femoral_Neck ] * Wikipedia:Femur_neck * galen:NeckOfFemur * http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0007319.md b/md/UBERON/19/UBERON_0007319.md index 7a3a3d4ec3..dab4037551 100644 --- a/md/UBERON/19/UBERON_0007319.md +++ b/md/UBERON/19/UBERON_0007319.md @@ -7,7 +7,7 @@ ## Synonyms - * medial accessory saphenous vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44322] + * medial accessory saphenous vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44322 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0007619.md b/md/UBERON/19/UBERON_0007619.md index 60ccf25974..2b66db3ad4 100644 --- a/md/UBERON/19/UBERON_0007619.md +++ b/md/UBERON/19/UBERON_0007619.md @@ -7,7 +7,7 @@ ## Synonyms - * retina lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001318] + * retina lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001318 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0007719.md b/md/UBERON/19/UBERON_0007719.md index 85850a66e8..cf640ef6f0 100644 --- a/md/UBERON/19/UBERON_0007719.md +++ b/md/UBERON/19/UBERON_0007719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007719 * *Label* = bone of reproductive structure - * *Definition* = A bone that is part of a reproductive structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a reproductive structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reproductive structure](../../UBERON/56/UBERON_0005156.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0007819.md b/md/UBERON/19/UBERON_0007819.md index 1174192912..eb1836e931 100644 --- a/md/UBERON/19/UBERON_0007819.md +++ b/md/UBERON/19/UBERON_0007819.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007819 * *Label* = minor alar cartilage - * *Definition* = The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_alar_cartilages] + * *Definition* = The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_alar_cartilages ] ## Synonyms - * lesser alar cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59507] - * cartilago alaris minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_alar_cartilages[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lesser alar cartilages [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lesser alar cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59507 ] + * cartilago alaris minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_alar_cartilages, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lesser alar cartilages [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0008819.md b/md/UBERON/19/UBERON_0008819.md index 220b626f57..bf33881563 100644 --- a/md/UBERON/19/UBERON_0008819.md +++ b/md/UBERON/19/UBERON_0008819.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008819 * *Label* = inferior mediastinum - * *Definition* = Anterior, middle and posterior mediastinum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mediastinum] + * *Definition* = Anterior, middle and posterior mediastinum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mediastinum ] ## Synonyms - * inferior mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9828] + * inferior mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9828 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0008919.md b/md/UBERON/19/UBERON_0008919.md index e28e0e10b6..4a45fe925a 100644 --- a/md/UBERON/19/UBERON_0008919.md +++ b/md/UBERON/19/UBERON_0008919.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0010377 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008919 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_0009119.md b/md/UBERON/19/UBERON_0009119.md index cde9e9e10a..bb9edb9464 100644 --- a/md/UBERON/19/UBERON_0009119.md +++ b/md/UBERON/19/UBERON_0009119.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009119 * *Label* = branchial basket - * *Definition* = the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] + * *Definition* = the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm ] * *Comment* = May also be present in amphioxus. Editor notes: developmental relationship needs to be changed if the scope is broadened, as NC is vertebrate-specific ## Synonyms - * gill basket [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm] + * gill basket [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0009719.md b/md/UBERON/19/UBERON_0009719.md index 6c81d608bd..af43e517ad 100644 --- a/md/UBERON/19/UBERON_0009719.md +++ b/md/UBERON/19/UBERON_0009719.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0009919.md b/md/UBERON/19/UBERON_0009919.md index 36e657d322..9c758d6338 100644 --- a/md/UBERON/19/UBERON_0009919.md +++ b/md/UBERON/19/UBERON_0009919.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009919 * *Label* = ureter smooth muscle - * *Definition* = the smooth muscle tissue surrounding the epithelium of the ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011426] + * *Definition* = the smooth muscle tissue surrounding the epithelium of the ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011426 ] ## Synonyms - * ureteral smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011426] - * ureteral smooth muscle layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28844] + * ureteral smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011426 ] + * ureteral smooth muscle layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28844 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0010019.md b/md/UBERON/19/UBERON_0010019.md index 7d247f26ce..2bd4e32c9c 100644 --- a/md/UBERON/19/UBERON_0010019.md +++ b/md/UBERON/19/UBERON_0010019.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010019 * *Label* = spiracle - * *Definition* = a small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiracle#Vertebrates] + * *Definition* = a small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiracle#Vertebrates ] * *Comment* = Taxon notes: The spiracle is still found in all cartilaginous fish except chimaeras, and in bony fishes in the coelacanth, sturgeon, paddlefish and bichirs. It is also seen as an otic notch in the skull of the extinct labyrinthodonts, and is thought to be associated with the ear opening in amniotes and frogs[WP]. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. TODO - check GO:0035277-spiracle morphogenesis, open tracheal system - taxon constraint in GO ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0010219.md b/md/UBERON/19/UBERON_0010219.md index c393070726..bfaa04f2e4 100644 --- a/md/UBERON/19/UBERON_0010219.md +++ b/md/UBERON/19/UBERON_0010219.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0010419.md b/md/UBERON/19/UBERON_0010419.md index 670b670d76..a16435b394 100644 --- a/md/UBERON/19/UBERON_0010419.md +++ b/md/UBERON/19/UBERON_0010419.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010419 * *Label* = vibrissa follicle - * *Definition* = A hair follicle that is part of a vibrissa unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hair follicle that is part of a vibrissa unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * follicle of sinus hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26759] - * follicle of vibrissa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26720] - * vibrissa follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010234] + * follicle of sinus hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26759 ] + * follicle of vibrissa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26720 ] + * vibrissa follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010234 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hair follicle](../../UBERON/73/UBERON_0002073.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa unit](../../UBERON/33/UBERON_0011933.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0010519.md b/md/UBERON/19/UBERON_0010519.md index 5448464192..819ebdf5dd 100644 --- a/md/UBERON/19/UBERON_0010519.md +++ b/md/UBERON/19/UBERON_0010519.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010519 * *Label* = tail electric organ - * *Definition* = An electric organ that is part of a tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An electric organ that is part of a tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [electric organ](../../UBERON/69/UBERON_0006869.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tail](../../UBERON/15/UBERON_0002415.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0010719.md b/md/UBERON/19/UBERON_0010719.md index 73423991c1..3d6ec5c8b0 100644 --- a/md/UBERON/19/UBERON_0010719.md +++ b/md/UBERON/19/UBERON_0010719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010719 * *Label* = girdle skeleton - * *Definition* = The subdivision of the skeleton of either the pectoral or pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The subdivision of the skeleton of either the pectoral or pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [appendage girdle region](../../UBERON/23/UBERON_0007823.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal subdivision that is part of the appendage girdle region.[VSAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: part_of subdivision of skeleton (UBERON:0010912)[VSAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: proximally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011119.md b/md/UBERON/19/UBERON_0011119.md index 8c7f8e9d16..8f467fd92f 100644 --- a/md/UBERON/19/UBERON_0011119.md +++ b/md/UBERON/19/UBERON_0011119.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011119 * *Label* = carpometacarpal joint - * *Definition* = The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint] + * *Definition* = The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint ] ## Synonyms - * articulationes carpometacarpe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * CMJ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint] - * carpometacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint] - * carpometacarpal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint] + * articulationes carpometacarpe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * CMJ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint ] + * carpometacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint ] + * carpometacarpal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint ] ## Cross-references * FMA:35287 * SCTID:361842002 - * UMLS:C0224620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carpometacarpal_Joint] + * UMLS:C0224620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carpometacarpal_Joint ] * Wikipedia:Carpometacarpal_joint * http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray335.png * ncithesaurus:Carpometacarpal_Joint @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [carpal bone](../../UBERON/35/UBERON_0001435.md) and [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011219.md b/md/UBERON/19/UBERON_0011219.md index 63d68111e2..ca9dc85716 100644 --- a/md/UBERON/19/UBERON_0011219.md +++ b/md/UBERON/19/UBERON_0011219.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011219 * *Label* = longissimus lumborum muscle - * *Definition* = Lumbar muscle that extends and rotates the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001925] + * *Definition* = Lumbar muscle that extends and rotates the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001925 ] ## Synonyms - * longissimus lumborum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002338] - * musculus longissimus lumborum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001925] + * longissimus lumborum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002338 ] + * musculus longissimus lumborum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001925 ] ## Cross-references * BTO:0001925 * MA:0002338 - * UMLS:C1708736 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longissimus_Lumborum] + * UMLS:C1708736 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longissimus_Lumborum ] * ncithesaurus:Longissimus_Lumborum ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011319.md b/md/UBERON/19/UBERON_0011319.md index f330df9bf8..2c057c98ea 100644 --- a/md/UBERON/19/UBERON_0011319.md +++ b/md/UBERON/19/UBERON_0011319.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011319 * *Label* = disk of temporomandibular joint - * *Definition* = The fibrocartilaginous plate that separates the joint into upper and lower cavities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003675[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_disk_of_the_temporomandibular_joint] + * *Definition* = The fibrocartilaginous plate that separates the joint into upper and lower cavities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003675, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_disk_of_the_temporomandibular_joint ] ## Synonyms - * articular disc of temporomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57059] - * articular disk of temporomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57059] - * discus articularis (articulatio temporomandibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57059] - * discus articularis articulationis temporomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * discus articularis articulationis temporomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_disk_of_the_temporomandibular_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * temporomandibular articular disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003675] - * articular disc of temporomandibular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003675] - * discus articularis temporomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003675] - * mandibular disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003675] - * temporomandibular articular disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:273] - * temporomandibular joint disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_disk_of_the_temporomandibular_joint] + * articular disc of temporomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57059 ] + * articular disk of temporomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57059 ] + * discus articularis (articulatio temporomandibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57059 ] + * discus articularis articulationis temporomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * discus articularis articulationis temporomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_disk_of_the_temporomandibular_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * temporomandibular articular disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003675 ] + * articular disc of temporomandibular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003675 ] + * discus articularis temporomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003675 ] + * mandibular disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003675 ] + * temporomandibular articular disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:273 ] + * temporomandibular joint disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_disk_of_the_temporomandibular_joint ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011619.md b/md/UBERON/19/UBERON_0011619.md index 50af3846a0..1c9e6c1041 100644 --- a/md/UBERON/19/UBERON_0011619.md +++ b/md/UBERON/19/UBERON_0011619.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011619 * *Label* = stylohyoid bone - * *Definition* = This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1758] + * *Definition* = This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1758 ] * *Comment* = Taxon notes: The stylohyoid bone is one of the four bones ( stylohyoid, ceratohyoid, basihyoid, thyrohyoid) of the hyoid apparatus in the horse. Other species have five bones, the fifth being the epihyoid that is not present in the horse. The stylohyoid bone in the horse is significantly larger compared to other bones of the hyoid apparatus and divides the guttural pouch into two chambers, medial and lateral. The hyoid apparatus consists of a series of bony rods, jointed together and forming a means of suspending the tongue and larynx from the skull[MURDOCH] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011819.md b/md/UBERON/19/UBERON_0011819.md index 82aa40c906..24069764ed 100644 --- a/md/UBERON/19/UBERON_0011819.md +++ b/md/UBERON/19/UBERON_0011819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011819 * *Label* = lumen of atrioventricular canal - * *Definition* = A tube lumen that is part of a atrioventricular canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tube lumen that is part of a atrioventricular canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [atrioventricular canal](../../UBERON/87/UBERON_0002087.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011819 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0011919.md b/md/UBERON/19/UBERON_0011919.md index 8d612aa7f3..f75e00b079 100644 --- a/md/UBERON/19/UBERON_0011919.md +++ b/md/UBERON/19/UBERON_0011919.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011919 * *Label* = yolk sac blood island - * *Definition* = masses of developing blood cells attached to endothelium in the yolk sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011204] + * *Definition* = masses of developing blood cells attached to endothelium in the yolk sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011204 ] ## Synonyms - * visceral yolk sac blood island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011204] - * yolk sac blood islands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000177] + * visceral yolk sac blood island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011204 ] + * yolk sac blood islands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000177 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood island](../../UBERON/61/UBERON_0003061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesenchyme of yolk sac](../../UBERON/16/UBERON_0003316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011919 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0012119.md b/md/UBERON/19/UBERON_0012119.md index d653178fba..e28ecfc019 100644 --- a/md/UBERON/19/UBERON_0012119.md +++ b/md/UBERON/19/UBERON_0012119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012119 * *Label* = vinculum tendon of wing - * *Definition* = a tendon which emerges from the distal end of the humerus and follows the posterior margin of the wing, attaching at the distal end of digit 2. The raches of the remiges (i.e., the stems of the flight feathers) are stabilized by passing through the vinculum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryUV.html] + * *Definition* = a tendon which emerges from the distal end of the humerus and follows the posterior margin of the wing, attaching at the distal end of digit 2. The raches of the remiges (i.e., the stems of the flight feathers) are stabilized by passing through the vinculum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryUV.html ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0012319.md b/md/UBERON/19/UBERON_0012319.md index 25313034eb..3c639b9331 100644 --- a/md/UBERON/19/UBERON_0012319.md +++ b/md/UBERON/19/UBERON_0012319.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012319 * *Label* = posterior ethmoidal artery - * *Definition* = The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ethmoidal_artery] + * *Definition* = The posterior ethmoidal artery is an artery of the head. It is smaller than the anterior ethmoidal artery, branches off from the ophthalmic artery when it reaches the medial wall of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ethmoidal_artery ] ## Synonyms - * a. ethmoidalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria ethmoidalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior ethmoidal vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ethmoidal_artery] + * a. ethmoidalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria ethmoidalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior ethmoidal vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ethmoidal_artery ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012319 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0012419.md b/md/UBERON/19/UBERON_0012419.md index 34271bd9ec..4ea3200cb2 100644 --- a/md/UBERON/19/UBERON_0012419.md +++ b/md/UBERON/19/UBERON_0012419.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012419 * *Label* = taenia coli - * *Definition* = The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taenia_coli] + * *Definition* = The taeniae coli (also teniae coli) are three separate longitudinal ribbons of smooth muscle on the outside of the ascending, transverse, descending and sigmoid colons. They are visible, and can be seen just below the serosa or fibrosa. They are the Mesocolic, Free and Omental Coli. The teniae coli contracts length wise to produce the haustra, the bulges in the colon. The bands converge at the root of the vermiform appendix and the rectum. These bands correspond to the outer layer of the muscularis externa, in other portions of the digestive tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taenia_coli ] ## Synonyms - * longitudinal band of large intestine muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15041] - * longitudinal bands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taenia_coli] - * taeniae coli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taenia_coli] - * tenia coli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taenia_coli] - * teniae coli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taenia_coli] + * longitudinal band of large intestine muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15041 ] + * longitudinal bands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taenia_coli ] + * taeniae coli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taenia_coli ] + * tenia coli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taenia_coli ] + * teniae coli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taenia_coli ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012419 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0013119.md b/md/UBERON/19/UBERON_0013119.md index 2e8943fece..803da427e1 100644 --- a/md/UBERON/19/UBERON_0013119.md +++ b/md/UBERON/19/UBERON_0013119.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013119 * *Label* = haemal node - * *Definition* = A lymphoid organ found in various mammals and some birds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Haemal_nodes] + * *Definition* = A lymphoid organ found in various mammals and some birds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haemal_nodes ] * *Comment* = Hemal nodes are characterized by the presence of large numbers of erythrocytes. Lymph nodes (see below) and hemal nodes share some similarities of structure, but really are fundamentally different organs both qualitatively and quantitatively. Both lymph and hemal nodes contain diffuse lymphatic tissue, and in most cases have nodular tissue in the form of germinal centers, as well. Like the lymph node, the hemal node has a cortex and a medulla, and germinal centers are frequently seen. There's a distinct capsule, and hemal nodes are served at the hilus by an afferent arteriole. [http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab13/lab13.htm] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013119 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0013219.md b/md/UBERON/19/UBERON_0013219.md index cc8f8695c3..c048afa7ad 100644 --- a/md/UBERON/19/UBERON_0013219.md +++ b/md/UBERON/19/UBERON_0013219.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013219 * *Label* = parotoid gland - * *Definition* = The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parotoid_gland] + * *Definition* = The parotoid gland (alternatively, paratoid gland) is an external skin gland on the back, neck, and shoulder of toads and some frogs and salamanders. It secretes a milky alkaloid substance to deter predators. The substance produced acts as a neurotoxin. Parotoid glands are sometimes said to be wart-like in appearance, though warts are abnormal growths caused by viral infections while parotoid glands are normal, healthy parts of the animals that bear them. The vague similarity in appearance, however, is the reason behind the mistaken belief that touching a toad causes warts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parotoid_gland ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013219 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0013519.md b/md/UBERON/19/UBERON_0013519.md index 1c32a7523f..f379f7a7c1 100644 --- a/md/UBERON/19/UBERON_0013519.md +++ b/md/UBERON/19/UBERON_0013519.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013519 * *Label* = uterine tube isthmus - * *Definition* = The third segment of the oviduct. At this point in the eggs journey down the oviduct, the membranes form and calcification starts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://caiquesite.com/glossary.htm] + * *Definition* = The third segment of the oviduct. At this point in the eggs journey down the oviduct, the membranes form and calcification starts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://caiquesite.com/glossary.htm ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013519 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0013619.md b/md/UBERON/19/UBERON_0013619.md index 81984f940f..687a249e3e 100644 --- a/md/UBERON/19/UBERON_0013619.md +++ b/md/UBERON/19/UBERON_0013619.md @@ -6,9 +6,9 @@ ## Synonyms - * maxillary secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] - * upper permanent molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] - * upper secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] + * maxillary secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] + * upper permanent molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] + * upper secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) and [secondary molar tooth](../../UBERON/18/UBERON_0013618.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0013719.md b/md/UBERON/19/UBERON_0013719.md index 27d43c8083..7aa64fa1a0 100644 --- a/md/UBERON/19/UBERON_0013719.md +++ b/md/UBERON/19/UBERON_0013719.md @@ -8,7 +8,7 @@ ## Synonyms * dartos layer of scrotum - * dartos tunic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dartos] + * dartos tunic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dartos ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dartos muscle](../../UBERON/18/UBERON_0013718.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0014619.md b/md/UBERON/19/UBERON_0014619.md index f88daa64bf..5b63253cea 100644 --- a/md/UBERON/19/UBERON_0014619.md +++ b/md/UBERON/19/UBERON_0014619.md @@ -6,15 +6,15 @@ ## Synonyms - * cervical spinal cord lateral horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1665[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * cervical spinal cord intermediate horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1665] + * cervical spinal cord lateral horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1665, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * cervical spinal cord intermediate horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1665 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1665 * SCTID:174268004 - * UMLS:C0228614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1665] - * UMLS:C1278739 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1665] + * UMLS:C0228614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1665 ] + * UMLS:C1278739 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1665 ] ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [spinal cord lateral horn](../../UBERON/76/UBERON_0004676.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014619 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0014719.md b/md/UBERON/19/UBERON_0014719.md index 734d31e20b..0bfb142fe6 100644 --- a/md/UBERON/19/UBERON_0014719.md +++ b/md/UBERON/19/UBERON_0014719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014719 * *Label* = intralobular duct - * *Definition* = A duct that is located within a lobule, with no more connective tissue intervening between ducts and secretory units (i.e., acini or tubules) than between adjacent secretory units. Intercalated and striated ducts are intralobular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = A duct that is located within a lobule, with no more connective tissue intervening between ducts and secretory units (i.e., acini or tubules) than between adjacent secretory units. Intercalated and striated ducts are intralobular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobule](../../UBERON/11/UBERON_0009911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014719 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_0015019.md b/md/UBERON/19/UBERON_0015019.md index cce177d71c..5029f4b253 100644 --- a/md/UBERON/19/UBERON_0015019.md +++ b/md/UBERON/19/UBERON_0015019.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015019 * *Label* = rib endochondral element - * *Definition* = A rib bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A rib bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * rib element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * rib skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * rib element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * rib skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [rib cartilage element](../../UBERON/88/UBERON_0006288.md)or[rib pre-cartilage condensation](../../UBERON/89/UBERON_0006289.md)or[rib](../../UBERON/28/UBERON_0002228.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_1000019.md b/md/UBERON/19/UBERON_1000019.md index 0de8e8f828..3c9ab1e394 100644 --- a/md/UBERON/19/UBERON_1000019.md +++ b/md/UBERON/19/UBERON_1000019.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000019 * *Label* = top of head - * *Definition* = The top of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = The top of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] * *Comment* = note in the FMA, vertex is a point and not a subdivision ## Synonyms - * vertex of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46484] - * vertex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46484] + * vertex of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46484 ] + * vertex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46484 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000019 + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2000319.md b/md/UBERON/19/UBERON_2000319.md index 57cd6ac104..5b0841917c 100644 --- a/md/UBERON/19/UBERON_2000319.md +++ b/md/UBERON/19/UBERON_2000319.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2000419.md b/md/UBERON/19/UBERON_2000419.md index 90a0ec41f2..82e6f72159 100644 --- a/md/UBERON/19/UBERON_2000419.md +++ b/md/UBERON/19/UBERON_2000419.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000419 * *Label* = pterosphenoid - * *Definition* = Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * alisphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000419] - * pterosphenoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000419[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * alisphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000419 ] + * pterosphenoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000419, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -40,7 +40,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2000719.md b/md/UBERON/19/UBERON_2000719.md index a0b98cbfe1..be0067d8c5 100644 --- a/md/UBERON/19/UBERON_2000719.md +++ b/md/UBERON/19/UBERON_2000719.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000719[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000719, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_2000819.md b/md/UBERON/19/UBERON_2000819.md index db5e5b9dcc..78f2d4171b 100644 --- a/md/UBERON/19/UBERON_2000819.md +++ b/md/UBERON/19/UBERON_2000819.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_2000919.md b/md/UBERON/19/UBERON_2000919.md index 6ae785a11c..78c1cd9ac3 100644 --- a/md/UBERON/19/UBERON_2000919.md +++ b/md/UBERON/19/UBERON_2000919.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000919[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000919, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_2001019.md b/md/UBERON/19/UBERON_2001019.md index e7158e3349..055d83c84e 100644 --- a/md/UBERON/19/UBERON_2001019.md +++ b/md/UBERON/19/UBERON_2001019.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001019 * *Label* = myotome somite 28 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001419.md b/md/UBERON/19/UBERON_2001419.md index fd4182603e..b12ef87f7f 100644 --- a/md/UBERON/19/UBERON_2001419.md +++ b/md/UBERON/19/UBERON_2001419.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001419 * *Label* = dorsal fin pterygiophore - * *Definition* = A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsal fin pterygiophores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001419[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * dorsal fin support [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001419] + * dorsal fin pterygiophores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001419, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * dorsal fin support [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001419 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001519.md b/md/UBERON/19/UBERON_2001519.md index 461e0da0ef..92e32f43e4 100644 --- a/md/UBERON/19/UBERON_2001519.md +++ b/md/UBERON/19/UBERON_2001519.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001519 * *Label* = ceratobranchial 4 cartilage - * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001619.md b/md/UBERON/19/UBERON_2001619.md index 3b94b2390a..99bd911ec9 100644 --- a/md/UBERON/19/UBERON_2001619.md +++ b/md/UBERON/19/UBERON_2001619.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001619 * *Label* = post-otic sensory canal - * *Definition* = Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. ## Synonyms - * post-temporal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001619] + * post-temporal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001619 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001719.md b/md/UBERON/19/UBERON_2001719.md index 34a86b90a3..fdac0d9179 100644 --- a/md/UBERON/19/UBERON_2001719.md +++ b/md/UBERON/19/UBERON_2001719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001719 * *Label* = caudal principal ray 7 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001819.md b/md/UBERON/19/UBERON_2001819.md index 2025fe4bcc..8fe745b7ca 100644 --- a/md/UBERON/19/UBERON_2001819.md +++ b/md/UBERON/19/UBERON_2001819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001819 * *Label* = dorsal fin proximal radial bone 2 - * *Definition* = dorsal fin proximal radial 2 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 2 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 2](../../UBERON/19/UBERON_2101819.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2001919.md b/md/UBERON/19/UBERON_2001919.md index d0d9faa799..3ff629884c 100644 --- a/md/UBERON/19/UBERON_2001919.md +++ b/md/UBERON/19/UBERON_2001919.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001919 * *Label* = basibranchial 5 element - * *Definition* = Skeletal element that is median and associated with branchial arch 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is median and associated with branchial arch 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2002019.md b/md/UBERON/19/UBERON_2002019.md index 8810abca17..009c8ca62f 100644 --- a/md/UBERON/19/UBERON_2002019.md +++ b/md/UBERON/19/UBERON_2002019.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002019 * *Label* = pterotic-posttemporal-supracleithrum - * *Definition* = Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pterotic-supracleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002019] + * pterotic-supracleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002019 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2002119.md b/md/UBERON/19/UBERON_2002119.md index f483771565..0efea5d7fb 100644 --- a/md/UBERON/19/UBERON_2002119.md +++ b/md/UBERON/19/UBERON_2002119.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2002219.md b/md/UBERON/19/UBERON_2002219.md index 1b59da9eac..0678df9f5a 100644 --- a/md/UBERON/19/UBERON_2002219.md +++ b/md/UBERON/19/UBERON_2002219.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2005019.md b/md/UBERON/19/UBERON_2005019.md index ab5af9fb89..1f07727b2e 100644 --- a/md/UBERON/19/UBERON_2005019.md +++ b/md/UBERON/19/UBERON_2005019.md @@ -6,8 +6,8 @@ ## Synonyms - * ELA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005019] - * efferent lamellar arterioles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005019[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ELA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005019 ] + * efferent lamellar arterioles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005019, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2005119.md b/md/UBERON/19/UBERON_2005119.md index 6f41e24113..ed4073ffe1 100644 --- a/md/UBERON/19/UBERON_2005119.md +++ b/md/UBERON/19/UBERON_2005119.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005119 * *Label* = barbel primordium - * *Definition* = A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * barbel primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005119[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * barbel primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005119, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2005219.md b/md/UBERON/19/UBERON_2005219.md index 0abaa0d4f9..4cfc898901 100644 --- a/md/UBERON/19/UBERON_2005219.md +++ b/md/UBERON/19/UBERON_2005219.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005219 * *Label* = choroid plexus vascular circuit - * *Definition* = Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-080908-11] + * *Definition* = Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-080908-11 ] ## Synonyms - * CVC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005219] - * choroid vascular circuit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005219] + * CVC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005219 ] + * choroid vascular circuit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005219 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2005319.md b/md/UBERON/19/UBERON_2005319.md index 273a99f788..c50d9a0613 100644 --- a/md/UBERON/19/UBERON_2005319.md +++ b/md/UBERON/19/UBERON_2005319.md @@ -6,7 +6,7 @@ ## Synonyms - * islv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005319] + * islv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005319 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2101819.md b/md/UBERON/19/UBERON_2101819.md index f567d5b2a7..c88f67c090 100644 --- a/md/UBERON/19/UBERON_2101819.md +++ b/md/UBERON/19/UBERON_2101819.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_2201819.md b/md/UBERON/19/UBERON_2201819.md index 98d63e9ff4..c8050aea8d 100644 --- a/md/UBERON/19/UBERON_2201819.md +++ b/md/UBERON/19/UBERON_2201819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201819 * *Label* = dorsal fin proximal radial cartilage 2 - * *Definition* = dorsal fin proximal radial 2 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 2 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 2](../../UBERON/19/UBERON_2101819.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3000519.md b/md/UBERON/19/UBERON_3000519.md index ef7cc60c6d..04928fce67 100644 --- a/md/UBERON/19/UBERON_3000519.md +++ b/md/UBERON/19/UBERON_3000519.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [pseudodentary](../../UBERON/18/UBERON_3000518.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm. * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3000619.md b/md/UBERON/19/UBERON_3000619.md index 35b202ab89..ff2eb0f2ab 100644 --- a/md/UBERON/19/UBERON_3000619.md +++ b/md/UBERON/19/UBERON_3000619.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000619 * *Label* = tympanosquamosal - * *Definition* = Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3000719.md b/md/UBERON/19/UBERON_3000719.md index 7131480d5d..6df6cd5e24 100644 --- a/md/UBERON/19/UBERON_3000719.md +++ b/md/UBERON/19/UBERON_3000719.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000719 * *Label* = holochordal - * *Definition* = Spool-shaped vertebral centrum with a solid center. All traces of the notochord dissapear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Griffiths_1959] + * *Definition* = Spool-shaped vertebral centrum with a solid center. All traces of the notochord dissapear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Griffiths_1959 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3000819.md b/md/UBERON/19/UBERON_3000819.md index 12fad09a25..1ad995905a 100644 --- a/md/UBERON/19/UBERON_3000819.md +++ b/md/UBERON/19/UBERON_3000819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000819 * *Label* = margo clavicularis - * *Definition* = Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3010219.md b/md/UBERON/19/UBERON_3010219.md index 2688b62884..810499ee93 100644 --- a/md/UBERON/19/UBERON_3010219.md +++ b/md/UBERON/19/UBERON_3010219.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010219 * *Label* = internal carotid - * *Definition* = An artery which supplies the upper jaw and cranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = An artery which supplies the upper jaw and cranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3010319.md b/md/UBERON/19/UBERON_3010319.md index 94f2257489..fcf87553e0 100644 --- a/md/UBERON/19/UBERON_3010319.md +++ b/md/UBERON/19/UBERON_3010319.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010319 * *Label* = obsolete melanocyte - * *Definition* = A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * melonophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010319] + * melonophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010319 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000148 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_3010519.md b/md/UBERON/19/UBERON_3010519.md index 2180e42f8d..cc05219207 100644 --- a/md/UBERON/19/UBERON_3010519.md +++ b/md/UBERON/19/UBERON_3010519.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010519 * *Label* = Jacobson's vein - * *Definition* = Either of a pair of veins which receives many small vesicles from the kidney and collects blood from the oviducal vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Either of a pair of veins which receives many small vesicles from the kidney and collects blood from the oviducal vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3010719.md b/md/UBERON/19/UBERON_3010719.md index a9d1f2c3cc..dbef5b7748 100644 --- a/md/UBERON/19/UBERON_3010719.md +++ b/md/UBERON/19/UBERON_3010719.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_3010819.md b/md/UBERON/19/UBERON_3010819.md index ec66cd4a09..01cada929d 100644 --- a/md/UBERON/19/UBERON_3010819.md +++ b/md/UBERON/19/UBERON_3010819.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010819 * *Label* = gastrointestinal peritoneum - * *Definition* = Peritoneum that surrounds the stomach and intestines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:JMG] + * *Definition* = Peritoneum that surrounds the stomach and intestines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:JMG ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_4000019.md b/md/UBERON/19/UBERON_4000019.md index e8409606fa..793351d4a3 100644 --- a/md/UBERON/19/UBERON_4000019.md +++ b/md/UBERON/19/UBERON_4000019.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000019 * *Label* = obsolete chordablast - * *Definition* = Epithelial cell that is large, vacuolated, and part of the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Epithelial cell that is large, vacuolated, and part of the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007008 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/19/UBERON_4000119.md b/md/UBERON/19/UBERON_4000119.md index 7d20337bd3..9390108e4f 100644 --- a/md/UBERON/19/UBERON_4000119.md +++ b/md/UBERON/19/UBERON_4000119.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000119 * *Label* = non-mineralized avascular GAG-rich matrix - * *Definition* = Avascular GAG-rich matrix that is not mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Avascular GAG-rich matrix that is not mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * non-mineralized cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * non-mineralized cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_4200019.md b/md/UBERON/19/UBERON_4200019.md index 8bc32caf20..c21759bb7e 100644 --- a/md/UBERON/19/UBERON_4200019.md +++ b/md/UBERON/19/UBERON_4200019.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_4200119.md b/md/UBERON/19/UBERON_4200119.md index 7b95a13456..402d0526f9 100644 --- a/md/UBERON/19/UBERON_4200119.md +++ b/md/UBERON/19/UBERON_4200119.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/19/UBERON_4300019.md b/md/UBERON/19/UBERON_4300019.md index 17d8fe840c..10a1e581d1 100644 --- a/md/UBERON/19/UBERON_4300019.md +++ b/md/UBERON/19/UBERON_4300019.md @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000020.md b/md/UBERON/20/UBERON_0000020.md index a9ae284ad3..6236f63a76 100644 --- a/md/UBERON/20/UBERON_0000020.md +++ b/md/UBERON/20/UBERON_0000020.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000020 * *Label* = sense organ - * *Definition* = An organ that is capable of detection of chemical stimulus involved in sensory perception of smell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organ that is capable of detection of chemical stimulus involved in sensory perception of smell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * organ of sense organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * organ of sensory organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * organ of sensory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * sense organ system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * organ of sense organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * organ of sensory organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * organ of sensory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * sense organ system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * sensory organ - * sensory organ system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sensory system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WBbt:0006929] - * Sinnesorgan [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000202] + * sensory organ system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sensory system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WBbt:0006929 ] + * Sinnesorgan [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000202 ] * sensor ## Cross-references @@ -33,7 +33,7 @@ * MA:0000017 * MESH:A09 * SCTID:244485009 - * UMLS:C0935626 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Organ_of_the_Special_Sense] + * UMLS:C0935626 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Organ_of_the_Special_Sense ] * VHOG:0001407 * WBbt:0006929 * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [detection of stimulus involved in sensory perception](../../GO/06/GO_0050906.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000120.md b/md/UBERON/20/UBERON_0000120.md index ed1b6f71ea..71691088c0 100644 --- a/md/UBERON/20/UBERON_0000120.md +++ b/md/UBERON/20/UBERON_0000120.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000120 * *Label* = blood brain barrier - * *Definition* = Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1002/glia.20642[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood-brain_barrier] + * *Definition* = Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1002/glia.20642, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood-brain_barrier ] ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references * NIF_GrossAnatomy:nlx_subcell_100205 - * UMLS:C0005854 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blood-Brain_Barrier] + * UMLS:C0005854 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blood-Brain_Barrier ] * Wikipedia:Blood-brain_barrier * ncithesaurus:Blood-Brain_Barrier @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000220.md b/md/UBERON/20/UBERON_0000220.md index ee70bcad9e..38923a9fdb 100644 --- a/md/UBERON/20/UBERON_0000220.md +++ b/md/UBERON/20/UBERON_0000220.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000220 * *Label* = atlanto-occipital joint - * *Definition* = The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoccipital membrane; Anterior atlantoccipital membrane; Lateral atlantoccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-occipital_joint] + * *Definition* = The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoccipital membrane; Anterior atlantoccipital membrane; Lateral atlantoccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-occipital_joint ] ## Synonyms - * articulatio atlanto-occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24939] + * articulatio atlanto-occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24939 ] * atlanto occipital joint * atlantooccipital joint - * craniovertebral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24939] + * craniovertebral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24939 ] * occipito atlantal joint * occipito-atlantal joint - * articulatio atlantooccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-occipital_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio atlantooccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-occipital_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:24939 * SCTID:361831006 - * UMLS:C0004169 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Atlanto-occipital_Joint] + * UMLS:C0004169 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Atlanto-occipital_Joint ] * Wikipedia:Atlanto-occipital_joint * http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png * ncithesaurus:Atlanto-occipital_Joint @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000320.md b/md/UBERON/20/UBERON_0000320.md index 230d162838..620f9c7793 100644 --- a/md/UBERON/20/UBERON_0000320.md +++ b/md/UBERON/20/UBERON_0000320.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000320 * *Label* = duodenal mucosa - * *Definition* = A mucosa that is part of a duodenum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a duodenum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Doudenal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14942] - * Duodenal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14942] - * mucosa of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * duodenum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000367] + * Doudenal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14942 ] + * Duodenal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14942 ] + * mucosa of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * duodenum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000367 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003348 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000420.md b/md/UBERON/20/UBERON_0000420.md index 21c39afb2b..bd2b7e8531 100644 --- a/md/UBERON/20/UBERON_0000420.md +++ b/md/UBERON/20/UBERON_0000420.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000420 * *Label* = myoepithelium - * *Definition* = An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:0000185[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myoepithelial_cell] + * *Definition* = An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:0000185, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myoepithelial_cell ] ## Synonyms - * myo-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67805] - * myoepitheliocytus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myoepithelial_cell[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * myo-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67805 ] + * myoepitheliocytus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myoepithelial_cell, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atypical epithelium](../../UBERON/88/UBERON_0000488.md) and [has_part](../../BFO/51/BFO_0000051.md) some [myoepithelial cell](../../CL/85/CL_0000185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0000920.md b/md/UBERON/20/UBERON_0000920.md index c3a9e3e705..f70eebbfc2 100644 --- a/md/UBERON/20/UBERON_0000920.md +++ b/md/UBERON/20/UBERON_0000920.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000920 * *Label* = egg chorion - * *Definition* = A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0042600[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorion_(egg)] + * *Definition* = A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0042600, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorion_(egg) ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The egg shell. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001020.md b/md/UBERON/20/UBERON_0001020.md index a8c5926188..e698bd387b 100644 --- a/md/UBERON/20/UBERON_0001020.md +++ b/md/UBERON/20/UBERON_0001020.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001020 * *Label* = nervous system commissure - * *Definition* = axon tract that crosses the midline of the brain or spinal cord[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090513[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/325] + * *Definition* = axon tract that crosses the midline of the brain or spinal cord[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090513, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/325 ] * *Comment* = *not* the same as FMA:76741 Commissure ## Synonyms - * commissure of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83906] - * neuraxis commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83906] + * commissure of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83906 ] + * neuraxis commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83906 ] * commissure - * white matter commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CUMBO:CUMBO] + * white matter commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CUMBO:CUMBO ] ## Cross-references @@ -21,7 +21,7 @@ * NIF_GrossAnatomy:nlx_anat_20090513 * OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw * TADS:0000201 - * UMLS:C1185742 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Commissure] + * UMLS:C1185742 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Commissure ] * Wikipedia:Commissure * ncithesaurus:Commissure @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6) * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = commissural - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001120.md b/md/UBERON/20/UBERON_0001120.md index f57e7914a5..ff3f93522f 100644 --- a/md/UBERON/20/UBERON_0001120.md +++ b/md/UBERON/20/UBERON_0001120.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001120 * *Label* = left lobe of thyroid gland - * *Definition* = A lobe of thyroid gland that is in the left side of a thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobe of thyroid gland that is in the left side of a thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -18,7 +18,7 @@ * FMA:13369 * MA:0000728 * SCTID:170784008 - * UMLS:C0229582 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Thyroid_Gland_Lobe] + * UMLS:C0229582 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Thyroid_Gland_Lobe ] * VHOG:0000734 * ncithesaurus:Left_Thyroid_Gland_Lobe @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [thyroid gland](../../UBERON/46/UBERON_0002046.md) and [lobe of thyroid gland](../../UBERON/18/UBERON_0001118.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001220.md b/md/UBERON/20/UBERON_0001220.md index 38cf5be304..91ccc769e2 100644 --- a/md/UBERON/20/UBERON_0001220.md +++ b/md/UBERON/20/UBERON_0001220.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001220 * *Label* = quadratus lumborum - * *Definition* = The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadratus_lumborum_muscle] + * *Definition* = The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadratus_lumborum_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:15569 * MA:0002362 * OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA - * UMLS:C0224380 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Quadratus_Lumborum] + * UMLS:C0224380 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Quadratus_Lumborum ] * Wikipedia:Quadratus_lumborum_muscle * http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001320.md b/md/UBERON/20/UBERON_0001320.md index 147d03ce7d..8e0efd0e31 100644 --- a/md/UBERON/20/UBERON_0001320.md +++ b/md/UBERON/20/UBERON_0001320.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001320 * *Label* = iliolumbar vein - * *Definition* = The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliolumbar_vein] + * *Definition* = The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliolumbar_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ilio-lumbar vein - * vena iliolumbalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliolumbar_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena iliolumbalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliolumbar_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18902 * MA:0002146 * SCTID:286793006 - * UMLS:C0226760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliolumbar_Vein] + * UMLS:C0226760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliolumbar_Vein ] * Wikipedia:Iliolumbar_vein * http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001420.md b/md/UBERON/20/UBERON_0001420.md index 70ac23ecee..6fbfa3a286 100644 --- a/md/UBERON/20/UBERON_0001420.md +++ b/md/UBERON/20/UBERON_0001420.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001520.md b/md/UBERON/20/UBERON_0001520.md index aff79f5ef1..c080589012 100644 --- a/md/UBERON/20/UBERON_0001520.md +++ b/md/UBERON/20/UBERON_0001520.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001520 * *Label* = pronator teres - * *Definition* = The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronator_teres_muscle] + * *Definition* = The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronator_teres_muscle ] ## Synonyms - * musculus pronator teres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronator_teres_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pronator teres muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronator_teres_muscle] + * musculus pronator teres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronator_teres_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pronator teres muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronator_teres_muscle ] ## Cross-references * FMA:38450 * MA:0002357 * SCTID:302514000 - * UMLS:C0224249 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pronator_Teres] + * UMLS:C0224249 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pronator_Teres ] * Wikipedia:Pronator_teres_muscle * http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001620.md b/md/UBERON/20/UBERON_0001620.md index 942297c2bc..390da860f2 100644 --- a/md/UBERON/20/UBERON_0001620.md +++ b/md/UBERON/20/UBERON_0001620.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001620 * *Label* = central retinal artery - * *Definition* = The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_artery] + * *Definition* = The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,9 +11,9 @@ * Zinn's artery * central artery of retina * retinal artery - * arteria centralis retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria centralis retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_artery] - * central artery of the retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_artery] + * arteria centralis retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_artery ] + * arteria centralis retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * central artery of the retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_artery ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002038 * MESH:A07.231.114.765 * SCTID:277771001 - * UMLS:C0035301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retinal_Artery] + * UMLS:C0035301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retinal_Artery ] * Wikipedia:Central_retinal_artery * http://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray514_updated.png/200px-Gray514_updated.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001720.md b/md/UBERON/20/UBERON_0001720.md index 1ffaafb7e7..7448496d1d 100644 --- a/md/UBERON/20/UBERON_0001720.md +++ b/md/UBERON/20/UBERON_0001720.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001720 * *Label* = cochlear nucleus - * *Definition* = The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_nucleus] + * *Definition* = The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cochlear VIII nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001012] + * cochlear VIII nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001012 ] * cochlear nucleus of acoustic nerve * cochlear nucleus of eighth cranial nerve * nucleus of cochlear nerve @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001820.md b/md/UBERON/20/UBERON_0001820.md index 298e5a15b9..623b8d2844 100644 --- a/md/UBERON/20/UBERON_0001820.md +++ b/md/UBERON/20/UBERON_0001820.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001820 * *Label* = sweat gland - * *Definition* = Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sweat_gland] + * *Definition* = Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sweat_gland ] * *Comment* = todo - check if all sweat glands are epidermal - see EMAPA:29743 ## Synonyms - * glandula sudorifera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001331] - * sudoriferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001331] - * sudoriparous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001331] + * glandula sudorifera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001331 ] + * sudoriferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001331 ] + * sudoriparous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001331 ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A10.336.899 * OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA * SCTID:361700009 - * UMLS:C0038989 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sweat_Gland] + * UMLS:C0038989 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sweat_Gland ] * VHOG:0001467 * Wikipedia:Sweat_gland * http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [produces](../../RO/00/RO_0003000.md) some [sweat](../../UBERON/89/UBERON_0001089.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A gland that secretes sweat, found in the dermis or subcutaneous tissue, opening by a duct on the body surface. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Sweat glands (also called sudoriferous glands) are unique to mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0001920.md b/md/UBERON/20/UBERON_0001920.md index 4182fc9ee0..fc7309240c 100644 --- a/md/UBERON/20/UBERON_0001920.md +++ b/md/UBERON/20/UBERON_0001920.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001920 * *Label* = paraventricular nucleus of thalamus - * *Definition* = The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nuclei paraventriculares thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62152[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei paraventriculares thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62152, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * paraventricular gray - * paraventricular nuclei of thalamus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * paraventricular nuclei of thalamus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * paraventricular thalamic nucleus - * PV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_764[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus paramedianus (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:308[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus paraventricularis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:308[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paraventricular nuclei [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * paraventricular nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:308] + * PV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_764, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus paramedianus (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:308, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus paraventricularis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:308, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paraventricular nuclei [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * paraventricular nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:308 ] ## Cross-references @@ -28,9 +28,9 @@ * FMA:62152 * MA:0000866 * NIF_GrossAnatomy:birnlex_764 - * NeuroNames:308 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_764] + * NeuroNames:308 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_764 ] * SCTID:369163000 - * UMLS:C0175253 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_764] + * UMLS:C0175253 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_764 ] * http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002020.md b/md/UBERON/20/UBERON_0002020.md index 38c628c5d9..cfcfa16159 100644 --- a/md/UBERON/20/UBERON_0002020.md +++ b/md/UBERON/20/UBERON_0002020.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002020 * *Label* = gray matter of neuraxis - * *Definition* = Heterogeneous cluster of neural somas in the brain and the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gray_matter] + * *Definition* = Heterogeneous cluster of neural somas in the brain and the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gray_matter ] ## Synonyms * gray matter * grey matter * grey substance - * neuronal grey matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0001012] - * substantia grisea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67242[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gray mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001681] - * grisea [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * neuronal grey matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0001012 ] + * substantia grisea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67242, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gray mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001681 ] + * grisea [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * NeuroNames:2869 * OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA * TAO:0002197 - * UMLS:C0018220 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gray_Matter] + * UMLS:C0018220 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gray_Matter ] * VHOG:0001768 * Wikipedia:Gray_matter * ZFA:0001681 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002120.md b/md/UBERON/20/UBERON_0002120.md index d07263db99..cc6eddb052 100644 --- a/md/UBERON/20/UBERON_0002120.md +++ b/md/UBERON/20/UBERON_0002120.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002120 * *Label* = pronephros - * *Definition* = In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048793[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronephros] + * *Definition* = In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048793, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronephros ] * *Comment* = Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 ## Synonyms - * pronephric kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0002000] - * archinephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001541] - * embryonic kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001541] - * pronephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001541] + * pronephric kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0002000 ] + * archinephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001541 ] + * embryonic kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001541 ] + * pronephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001541 ] ## Cross-references @@ -26,7 +26,7 @@ * MIAA:0000117 * SCTID:308804007 * TAO:0000151 - * UMLS:C0231048 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pronephros] + * UMLS:C0231048 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pronephros ] * VHOG:0000037 * Wikipedia:Pronephros * XAO:0002000 @@ -64,8 +64,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pronephric * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005794 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002320.md b/md/UBERON/20/UBERON_0002320.md index 8932f74fbb..f6c7abd645 100644 --- a/md/UBERON/20/UBERON_0002320.md +++ b/md/UBERON/20/UBERON_0002320.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002320 * *Label* = glomerular mesangium - * *Definition* = A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A05.810.453.736.520.380[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerular_mesangium] + * *Definition* = A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A05.810.453.736.520.380, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerular_mesangium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002420.md b/md/UBERON/20/UBERON_0002420.md index 5e4c2fb07c..f0886c57e6 100644 --- a/md/UBERON/20/UBERON_0002420.md +++ b/md/UBERON/20/UBERON_0002420.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002420 * *Label* = basal ganglion - * *Definition* = An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_826] + * *Definition* = An individual member of a collection of basal ganglia. Basal ganglia are subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_826 ] * *Comment* = Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done. ## Synonyms * basal ganglion of telencephalon - * basal ganglia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000184] - * nuclei basales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal ganglia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000184 ] + * nuclei basales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002520.md b/md/UBERON/20/UBERON_0002520.md index 495c2bfabb..6dc34b5555 100644 --- a/md/UBERON/20/UBERON_0002520.md +++ b/md/UBERON/20/UBERON_0002520.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002520 * *Label* = submandibular lymph node - * *Definition* = The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_lymph_node] + * *Definition* = The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_lymph_node ] ## Synonyms * level ib neck node * submandibular node - * nodi lymphoidei submandibulares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000769] + * nodi lymphoidei submandibulares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000769 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:61224 * MA:0002843 * SCTID:245319003 - * UMLS:C0229722 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submandibular_Lymph_Node] + * UMLS:C0229722 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submandibular_Lymph_Node ] * Wikipedia:Submandibular_lymph_node * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Illu_quiz_hn_03.jpg/200px-Illu_quiz_hn_03.jpg * ncithesaurus:Submandibular_Lymph_Node @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002620.md b/md/UBERON/20/UBERON_0002620.md index e7106ff78b..bf69d4854d 100644 --- a/md/UBERON/20/UBERON_0002620.md +++ b/md/UBERON/20/UBERON_0002620.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002620 * *Label* = tuber cinereum - * *Definition* = Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1189[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tuber_cinereum] + * *Definition* = Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1189, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tuber_cinereum ] ## Synonyms - * tbcn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1189[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * tbcn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1189, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -17,11 +17,11 @@ * GAID:649 * MESH:A08.186.211.730.385.357.352.870 * NIF_GrossAnatomy:birnlex_1189 - * NeuroNames:393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1189] + * NeuroNames:393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1189 ] * SCTID:362381006 - * UMLS:C0041283 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1189] - * UMLS:C0041283 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tuber_Cinereum] - * UMLS:C1284640 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1189] + * UMLS:C0041283 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1189 ] + * UMLS:C0041283 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tuber_Cinereum ] + * UMLS:C1284640 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1189 ] * Wikipedia:Tuber_cinereum * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002720.md b/md/UBERON/20/UBERON_0002720.md index 16ddf83ac8..45d558ce3f 100644 --- a/md/UBERON/20/UBERON_0002720.md +++ b/md/UBERON/20/UBERON_0002720.md @@ -6,11 +6,11 @@ ## Synonyms - * peduncle of mammillary body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62061] - * mpe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * mammillary peduncle (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:425] - * pedunculus corporis mamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:425[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus corporis mammillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:425[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * peduncle of mammillary body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62061 ] + * mpe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * mammillary peduncle (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:425 ] + * pedunculus corporis mamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:425, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus corporis mammillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:425, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,10 +18,10 @@ * BAMS:mpe * FMA:62061 * NIF_GrossAnatomy:birnlex_1486 - * NeuroNames:425 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1486] + * NeuroNames:425 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1486 ] * SCTID:369146004 - * UMLS:C0152358 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1486] - * UMLS:C1289573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1486] + * UMLS:C0152358 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1486 ] + * UMLS:C1289573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1486 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002820.md b/md/UBERON/20/UBERON_0002820.md index f8d68b9647..1c4e4dabec 100644 --- a/md/UBERON/20/UBERON_0002820.md +++ b/md/UBERON/20/UBERON_0002820.md @@ -11,7 +11,7 @@ * FMA:75709 * NIF_GrossAnatomy:birnlex_2528 - * UMLS:C1184862 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2528] + * UMLS:C1184862 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2528 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002821 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0002920.md b/md/UBERON/20/UBERON_0002920.md index aa834279c8..540274a117 100644 --- a/md/UBERON/20/UBERON_0002920.md +++ b/md/UBERON/20/UBERON_0002920.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002920 * *Label* = callosal sulcus - * *Definition* = The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Callosal_sulcus] + * *Definition* = The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Callosal_sulcus ] ## Synonyms - * sulcus corporis callosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4040] - * sulcus of corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83743] - * cas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4040[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus corporis callosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Callosal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus corporis callosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4040 ] + * sulcus of corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83743 ] + * cas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4040, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus corporis callosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Callosal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:cas * FMA:83743 * NIF_GrossAnatomy:birnlex_4040 - * NeuroNames:36 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4040] + * NeuroNames:36 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4040 ] * SCTID:279349000 - * UMLS:C0262204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4040] + * UMLS:C0262204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4040 ] * Wikipedia:Callosal_sulcus * http://upload.wikimedia.org/wikipedia/commons/4/43/Gray727_sulcus_of_the_corpus_callosum.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray727_sulcus_of_the_corpus_callosum.svg/200px-Gray727_sulcus_of_the_corpus_callosum.svg.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003020.md b/md/UBERON/20/UBERON_0003020.md index dd0d8c3b76..b5eac472d6 100644 --- a/md/UBERON/20/UBERON_0003020.md +++ b/md/UBERON/20/UBERON_0003020.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003020 * *Label* = subcallosal area - * *Definition* = The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcallosal_area] + * *Definition* = The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcallosal_area ] ## Synonyms - * adolfactory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61890] - * area paraolfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61890[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paraolfactory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61890] - * parolfactory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61890] - * area parolfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcallosal_area[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area subcallosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcallosal_area[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * zuckerkandl's gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:278] + * adolfactory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61890 ] + * area paraolfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61890, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paraolfactory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61890 ] + * parolfactory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61890 ] + * area parolfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcallosal_area, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area subcallosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcallosal_area, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * zuckerkandl's gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:278 ] ## Cross-references * BAMS:SCA * FMA:61890 * NIF_GrossAnatomy:birnlex_919 - * NeuroNames:278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_919] + * NeuroNames:278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_919 ] * SCTID:362357004 - * UMLS:C0228282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_919] + * UMLS:C0228282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_919 ] * Wikipedia:Subcallosal_area * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003120.md b/md/UBERON/20/UBERON_0003120.md index 302123717e..e19ab22e71 100644 --- a/md/UBERON/20/UBERON_0003120.md +++ b/md/UBERON/20/UBERON_0003120.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003120 * *Label* = aortic arch 3 - * *Definition* = the vessels formed within the third pair of branchial arches in embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006356] + * *Definition* = the vessels formed within the third pair of branchial arches in embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006356 ] ## Synonyms - * 3rd arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000070] - * AA3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005007] - * carotid arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_arches#Arch_3] - * third aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000344] + * 3rd arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000070 ] + * AA3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005007 ] + * carotid arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_arches#Arch_3 ] + * third aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000344 ] * third branchial arch artery - * 3rd aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16687] - * 3rd branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16687] - * 3rd pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16687] + * 3rd aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16687 ] + * 3rd branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16687 ] + * 3rd pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16687 ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The third in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 3 lies within the 3rd branchial arch and branches directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004352 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003220.md b/md/UBERON/20/UBERON_0003220.md index 822a8d21fc..ee464552f2 100644 --- a/md/UBERON/20/UBERON_0003220.md +++ b/md/UBERON/20/UBERON_0003220.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003220 * *Label* = metanephric mesenchyme - * *Definition* = one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072075[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephric_blastema] + * *Definition* = one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072075, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephric_blastema ] * *Comment* = Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"] ## Synonyms - * metanephric blastema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephric_blastema] - * metanephric mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephric_blastema] - * metanephrogenic mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:5021] - * metanephros associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0001139] + * metanephric blastema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephric_blastema ] + * metanephric mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephric_blastema ] + * metanephrogenic mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:5021 ] + * metanephros associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0001139 ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A mass of intermediate mesodermal cells around the distal end of the ureteric bud that gives rise to nephrons in the metanephric kidney. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When the ureteric buds emerge from the nephric duct, they enter the metanephrogenic mesenchyme. The ureteric buds induce this mesenchymal tissue to condense around them and differentiate into the nephrons of the mammalian kidney. As this mesenchyme differentiates, it tells the ureteric bud to branch and grow.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003320.md b/md/UBERON/20/UBERON_0003320.md index f71f2f41f6..fa560d8e24 100644 --- a/md/UBERON/20/UBERON_0003320.md +++ b/md/UBERON/20/UBERON_0003320.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003320 * *Label* = mesenchyme of hip - * *Definition* = Mesenchyme that is part of a hip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a hip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hip mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hip mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003420.md b/md/UBERON/20/UBERON_0003420.md index e0dfdff30e..90d9c5d5a6 100644 --- a/md/UBERON/20/UBERON_0003420.md +++ b/md/UBERON/20/UBERON_0003420.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003420 * *Label* = mesenchyme of sublingual gland - * *Definition* = Mesenchyme that is part of a sublingual gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a sublingual gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Rivinus'gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus sublingualis mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of Rivinus'gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of ductus sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sublingual gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Rivinus'gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus sublingualis mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of Rivinus'gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of ductus sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sublingual gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sublingual gland](../../UBERON/32/UBERON_0001832.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003520.md b/md/UBERON/20/UBERON_0003520.md index 7d26422a5a..1318a44f6e 100644 --- a/md/UBERON/20/UBERON_0003520.md +++ b/md/UBERON/20/UBERON_0003520.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003520 * *Label* = pelvis blood vessel - * *Definition* = A blood vessel that is part of a pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003620.md b/md/UBERON/20/UBERON_0003620.md index d4efb6ac1b..772f94ceb0 100644 --- a/md/UBERON/20/UBERON_0003620.md +++ b/md/UBERON/20/UBERON_0003620.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003620 * *Label* = manual digit 1 phalanx - * *Definition* = A phalanx that is part of a hand digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a hand digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Pollex ; Digitus primus [ I ] digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Pollex ; Digitus primus [ I ] long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Pollex ; Digitus primus [ I ] phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of Pollex ; Digitus primus [ I ] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first digit of hand digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first digit of hand long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first digit of hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 1 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001389] - * long bone of digit of Pollex ; Digitus primus [ I ] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of Pollex ; Digitus primus [ I ] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * Pollex ; Digitus primus [ I ] digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Pollex ; Digitus primus [ I ] long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Pollex ; Digitus primus [ I ] phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of Pollex ; Digitus primus [ I ] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first digit of hand digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first digit of hand long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first digit of hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 1 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001389 ] + * long bone of digit of Pollex ; Digitus primus [ I ] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of Pollex ; Digitus primus [ I ] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -40,7 +40,7 @@ * FMA:35477 * MA:0001389 * SCTID:181975002 - * UMLS:C1711344 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_1_Phalanx] + * UMLS:C1711344 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_1_Phalanx ] * ncithesaurus:Hand_Digit_1_Phalanx ## Subsets @@ -55,15 +55,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003720.md b/md/UBERON/20/UBERON_0003720.md index 70a3eacd4e..10c1718d40 100644 --- a/md/UBERON/20/UBERON_0003720.md +++ b/md/UBERON/20/UBERON_0003720.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003720 * *Label* = anterior cranial fossa - * *Definition* = The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cranial_fossa] + * *Definition* = The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cranial_fossa ] ## Synonyms * anterior fossa - * fossa cranii anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cranial_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fossa cranii anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cranial_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:9682 * GAID:83 * MESH:A01.456.830.150 - * UMLS:C0230044 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Fossa] + * UMLS:C0230044 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Fossa ] * Wikipedia:Anterior_cranial_fossa * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003820.md b/md/UBERON/20/UBERON_0003820.md index 18096d358e..aca38c3a69 100644 --- a/md/UBERON/20/UBERON_0003820.md +++ b/md/UBERON/20/UBERON_0003820.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003820 * *Label* = prostate bud - * *Definition* = A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060513] + * *Definition* = A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060513 ] * *Comment* = AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204] ## Synonyms - * prostate ductal progenitor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * prostate ductal progenitor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] * prostatic bud ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0003920.md b/md/UBERON/20/UBERON_0003920.md index 5164dd79c0..81ddb4249f 100644 --- a/md/UBERON/20/UBERON_0003920.md +++ b/md/UBERON/20/UBERON_0003920.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003920 * *Label* = venous blood vessel - * *Definition* = a blood vessel that carries blood from the capillaries toward the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/venous+blood+vessel] + * *Definition* = a blood vessel that carries blood from the capillaries toward the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/venous+blood+vessel ] * *Comment* = Compare to: vein ## Synonyms - * segment of venous tree organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86188] - * venous tree organ segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86188] + * segment of venous tree organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86188 ] + * venous tree organ segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86188 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [venous system](../../UBERON/82/UBERON_0004582.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004020.md b/md/UBERON/20/UBERON_0004020.md index 10a33cec27..96e02289b8 100644 --- a/md/UBERON/20/UBERON_0004020.md +++ b/md/UBERON/20/UBERON_0004020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004020 * *Label* = obsolete embryonic cilium - * *Definition* = OBSOLETE: the earliest cilia of the mouse embryo found on the cells of the embryonic node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004131] + * *Definition* = OBSOLETE: the earliest cilia of the mouse embryo found on the cells of the embryonic node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004131 ] * *Comment* = Made obsolete as cell components are out of scope ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004020 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_0004120.md b/md/UBERON/20/UBERON_0004120.md index 169f07d0c9..cff1413938 100644 --- a/md/UBERON/20/UBERON_0004120.md +++ b/md/UBERON/20/UBERON_0004120.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004120 * *Label* = mesoderm-derived structure - * *Definition* = An anatomical structure that develops (entirely or partially) from the mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops (entirely or partially) from the mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004220.md b/md/UBERON/20/UBERON_0004220.md index f905559467..6e5acde6a9 100644 --- a/md/UBERON/20/UBERON_0004220.md +++ b/md/UBERON/20/UBERON_0004220.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004220 * *Label* = large intestine smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa ## Synonyms - * involuntary muscle of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,19 +28,20 @@ * [intestine smooth muscle](../../UBERON/21/UBERON_0004221.md) * [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) * [part_of](../../BFO/50/BFO_0000050.md) some [wall of large intestine](../../UBERON/69/UBERON_0001169.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [muscle layer of large intestine](../../UBERON/98/UBERON_0011198.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004320.md b/md/UBERON/20/UBERON_0004320.md index 724e3091ad..5e3f0a3e8e 100644 --- a/md/UBERON/20/UBERON_0004320.md +++ b/md/UBERON/20/UBERON_0004320.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004320 * *Label* = middle phalanx of manual digit 2 - * *Definition* = A middle phalanx that is part of a hand digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a hand digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd digit of hand intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd digit of hand middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 2nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 2nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 2nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 2nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23933] - * middle phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23933] - * middle phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second middle phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23933] + * 2nd digit of hand intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd digit of hand middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 2nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 2nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 2nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 2nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23933 ] + * middle phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23933 ] + * middle phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second middle phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23933 ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004420.md b/md/UBERON/20/UBERON_0004420.md index 8a4d667984..8926b0384b 100644 --- a/md/UBERON/20/UBERON_0004420.md +++ b/md/UBERON/20/UBERON_0004420.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004420 * *Label* = proximal epiphysis of phalanx of manual digit 4 - * *Definition* = A proximal epiphysis that is part of a manual digit 4 phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a manual digit 4 phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37522] - * base of phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37522] - * base of phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37522] - * base of phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37522] + * basal epiphysis of phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37522 ] + * base of phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37522 ] + * base of phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37522 ] + * base of phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37522 ] * proximal epiphysis of phalanx of manual digit 4 - * proximal epiphysis of phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37522[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * proximal epiphysis of phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37522, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4 phalanx](../../UBERON/38/UBERON_0003638.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004520.md b/md/UBERON/20/UBERON_0004520.md index c3b7db3239..8e765e7e37 100644 --- a/md/UBERON/20/UBERON_0004520.md +++ b/md/UBERON/20/UBERON_0004520.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004520 * *Label* = striated muscle tissue of prostate - * *Definition* = A portion of striated muscle tissue that is part of a prostate gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of striated muscle tissue that is part of a prostate gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) and [striated muscle tissue](../../UBERON/36/UBERON_0002036.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004620.md b/md/UBERON/20/UBERON_0004620.md index 761fac4593..d44abdc9f9 100644 --- a/md/UBERON/20/UBERON_0004620.md +++ b/md/UBERON/20/UBERON_0004620.md @@ -7,8 +7,8 @@ ## Synonyms - * L4 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13075] - * fourth lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13075] + * L4 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13075 ] + * fourth lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13075 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:13075 * MA:0001431 * SCTID:181844007 - * UMLS:C0223537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:L4_Vertebra] + * UMLS:C0223537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:L4_Vertebra ] * ncithesaurus:L4_Vertebra ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004720.md b/md/UBERON/20/UBERON_0004720.md index f861b23233..8a773702d6 100644 --- a/md/UBERON/20/UBERON_0004720.md +++ b/md/UBERON/20/UBERON_0004720.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004720 * *Label* = cerebellar vermis - * *Definition* = Part of the structure of animal brains, the cerebellar vermis is a narrow, wormlike structure between the hemispheres of the cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_vermis] + * *Definition* = Part of the structure of animal brains, the cerebellar vermis is a narrow, wormlike structure between the hemispheres of the cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_vermis ] ## Synonyms - * cerebellum vermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76928] - * vermal parts of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1175] - * vermal regions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:VERM] - * vermis cerebelli [I-X] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76928[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vermis of cerebellum [I-X] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76928] - * vermis of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76928] - * vermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_vermis] - * vermis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_vermis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cerebellum vermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76928 ] + * vermal parts of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1175 ] + * vermal regions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:VERM ] + * vermis cerebelli [I-X] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76928, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vermis of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76928 ] + * vermis of cerebellum [I-X] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76928 ] + * vermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_vermis ] + * vermis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_vermis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,8 @@ * NIF_GrossAnatomy:birnlex_1175 * NeuroNames:2463 * SCTID:279105006 - * UMLS:C0228482 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1106] - * UMLS:C0228482 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vermis] + * UMLS:C0228482 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1106 ] + * UMLS:C0228482 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vermis ] * Wikipedia:Cerebellar_vermis * http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004820.md b/md/UBERON/20/UBERON_0004820.md index 76e63b36e2..9a9f62f515 100644 --- a/md/UBERON/20/UBERON_0004820.md +++ b/md/UBERON/20/UBERON_0004820.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004820 * *Label* = bile duct epithelium - * *Definition* = Epithelium of the gallbladder and the intrahepatic and extrahepatic bile ducts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001513] + * *Definition* = Epithelium of the gallbladder and the intrahepatic and extrahepatic bile ducts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001513 ] * *Comment* = todo - check if BTO terms need merged ## Synonyms - * bile duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001513] - * epithelial tissue of bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of biliary duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of biliary duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bile duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001513 ] + * epithelial tissue of bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of biliary duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of biliary duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * BTO:0000417 * BTO:0001513 * MA:0001629 - * UMLS:C1711208 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bile_Duct_Epithelium] + * UMLS:C1711208 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bile_Duct_Epithelium ] * ncithesaurus:Bile_Duct_Epithelium ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bile duct](../../UBERON/94/UBERON_0002394.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0004920.md b/md/UBERON/20/UBERON_0004920.md index 10512ea375..a562106c2c 100644 --- a/md/UBERON/20/UBERON_0004920.md +++ b/md/UBERON/20/UBERON_0004920.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004920 * *Label* = obsolete mesoderm of gonad - * *Definition* = A mesoderm that is part of a gonad [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesoderm that is part of a gonad [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gonad mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonadal mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gonad mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonadal mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,9 +27,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004920 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_0005020.md b/md/UBERON/20/UBERON_0005020.md index 189fd056c6..2145cf16be 100644 --- a/md/UBERON/20/UBERON_0005020.md +++ b/md/UBERON/20/UBERON_0005020.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005020 * *Label* = mucosa of tongue - * *Definition* = A mucosa that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lingual mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54807] - * mucosa of organ of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54807[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lingual mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54807 ] + * mucosa of organ of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54807, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005120.md b/md/UBERON/20/UBERON_0005120.md index ceb020ba6b..08872e4d86 100644 --- a/md/UBERON/20/UBERON_0005120.md +++ b/md/UBERON/20/UBERON_0005120.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005120 * *Label* = metanephric late distal convoluted tubule - * *Definition* = The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072225] + * *Definition* = The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072225 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [late distal convoluted tubule](../../UBERON/02/UBERON_0005102.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005220.md b/md/UBERON/20/UBERON_0005220.md index 19c675a988..397bf3a16c 100644 --- a/md/UBERON/20/UBERON_0005220.md +++ b/md/UBERON/20/UBERON_0005220.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005220 * *Label* = pancreas head parenchyma - * *Definition* = A parenchyma that is part of a head of pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a head of pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head of pancreas](../../UBERON/69/UBERON_0001069.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005320.md b/md/UBERON/20/UBERON_0005320.md index 76f1b67a41..45eb3222b7 100644 --- a/md/UBERON/20/UBERON_0005320.md +++ b/md/UBERON/20/UBERON_0005320.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005320 * *Label* = mesonephric juxtaglomerular apparatus - * *Definition* = The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061212] + * *Definition* = The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061212 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [juxtaglomerular apparatus](../../UBERON/03/UBERON_0002303.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005420.md b/md/UBERON/20/UBERON_0005420.md index 2ebac8c8fe..a19816eb77 100644 --- a/md/UBERON/20/UBERON_0005420.md +++ b/md/UBERON/20/UBERON_0005420.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005420 * *Label* = pelvic appendage bud - * *Definition* = A limb bud that develops into a hindlimb or pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb bud that develops into a hindlimb or pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = at this time we have no need to name a more specific 'pelvic fin bud' class, but we may in future ## Synonyms - * hindlimb/pelvic fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001260] - * pelvic fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001384] + * hindlimb/pelvic fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001260 ] + * pelvic fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001384 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) and [paired limb/fin bud](../../UBERON/57/UBERON_0004357.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior region of body](../../UBERON/54/UBERON_0000154.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fin bud that develops into the pelvic fin.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005620.md b/md/UBERON/20/UBERON_0005620.md index 04acd555e3..dc34478974 100644 --- a/md/UBERON/20/UBERON_0005620.md +++ b/md/UBERON/20/UBERON_0005620.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005620 * *Label* = primary palate - * *Definition* = The part of the palate formed from the intermaxillary segment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_palate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.indiana.edu/~anat550/hnanim/face/face.html] + * *Definition* = The part of the palate formed from the intermaxillary segment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_palate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.indiana.edu/~anat550/hnanim/face/face.html ] ## Synonyms - * primary palate process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001499] - * palatum primarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primary palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_palate] - * primitive palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000362] - * processus palatinus medianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * primary palate process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001499 ] + * palatum primarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primary palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_palate ] + * primitive palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000362 ] + * processus palatinus medianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:17934 * MA:0001583 * SCTID:359541001 - * UMLS:C1268540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Palate] + * UMLS:C1268540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Palate ] * VHOG:0000362 * Wikipedia:Primary_palate * ncithesaurus:Primary_Palate @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The shelf separating the oral and nasal cavities that is formed during early embryonic development from protrusions of tissue between the olfactory pits. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Early tetrapod possessed a primary palate that included the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. Therapsid evolved a partial secondary palate formed by the medial extension of the premaxilla and maxilla. Mammals have a secondary palate that, in addition to extensions of the premaxilla and maxilla, includes part of the palatine bone[VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005720.md b/md/UBERON/20/UBERON_0005720.md index fc9c1f6de7..ee9f7f09e8 100644 --- a/md/UBERON/20/UBERON_0005720.md +++ b/md/UBERON/20/UBERON_0005720.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005720 * *Label* = hindbrain venous system - * *Definition* = A venous system that is part of a hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A venous system that is part of a hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * rhombencephalon venous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001322] + * rhombencephalon venous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001322 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [venous system](../../UBERON/82/UBERON_0004582.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005820.md b/md/UBERON/20/UBERON_0005820.md index 771620c73f..d90eff05a0 100644 --- a/md/UBERON/20/UBERON_0005820.md +++ b/md/UBERON/20/UBERON_0005820.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005820 * *Label* = pontine flexure - * *Definition* = A dorsally concave bend of the embryonic rhombencephalon that produces a thinning of the roof of the pons and medulla oblongata and defines the boundary between the metencephalon and myelencephalon in the embryo[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000844] + * *Definition* = A dorsally concave bend of the embryonic rhombencephalon that produces a thinning of the roof of the pons and medulla oblongata and defines the boundary between the metencephalon and myelencephalon in the embryo[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000844 ] ## Synonyms - * (embryonic) hindbrain flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000844] - * basicranial flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000844] - * pontal flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000844] - * transverse rhombencephalic flexure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000844] + * (embryonic) hindbrain flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000844 ] + * basicranial flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000844 ] + * pontal flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000844 ] + * transverse rhombencephalic flexure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000844 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0005920.md b/md/UBERON/20/UBERON_0005920.md index 40a3a35cdd..ce3607fdf9 100644 --- a/md/UBERON/20/UBERON_0005920.md +++ b/md/UBERON/20/UBERON_0005920.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005920 * *Label* = superior nasal concha - * *Definition* = The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_nasal_concha] + * *Definition* = The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_nasal_concha ] ## Synonyms - * superior nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57458] - * superior turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57458] - * superior concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_nasal_concha] + * superior nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57458 ] + * superior turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57458 ] + * superior concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_nasal_concha ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006120.md b/md/UBERON/20/UBERON_0006120.md index 822aba54b4..aeeecea78b 100644 --- a/md/UBERON/20/UBERON_0006120.md +++ b/md/UBERON/20/UBERON_0006120.md @@ -6,17 +6,17 @@ ## Synonyms - * lamina II of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris ii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer II of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407] - * outer gray layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407] - * stratum griseum superficiale colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stratum griseum superficiale of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * superficial gray layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407] - * superficial grey layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72407] - * superior colliculus superficial gray layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005034] - * superficial gray layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SuG] - * superficial grey layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sgr] + * lamina II of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris ii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer II of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407 ] + * outer gray layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407 ] + * stratum griseum superficiale colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stratum griseum superficiale of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * superficial gray layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407 ] + * superficial grey layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72407 ] + * superior colliculus superficial gray layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005034 ] + * superficial gray layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SuG ] + * superficial grey layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sgr ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006220.md b/md/UBERON/20/UBERON_0006220.md index 1a3017182b..d054cf3691 100644 --- a/md/UBERON/20/UBERON_0006220.md +++ b/md/UBERON/20/UBERON_0006220.md @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006320.md b/md/UBERON/20/UBERON_0006320.md index 4541d41e5c..fe25f34abd 100644 --- a/md/UBERON/20/UBERON_0006320.md +++ b/md/UBERON/20/UBERON_0006320.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006320 * *Label* = inferior oblique extraocular muscle - * *Definition* = thin, narrow muscle placed near the anterior margin of the floor of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_oblique_muscle] + * *Definition* = thin, narrow muscle placed near the anterior margin of the floor of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_oblique_muscle ] * *Comment* = Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 ## Synonyms - * inferior oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49040] + * inferior oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49040 ] * inferior oblique muscle - * musculus obliquus inferior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_oblique_muscle] - * obliquus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49040] - * obliquus oculi inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_oblique_muscle] - * ventral oblique extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001132] - * musculus obliquus inferior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_oblique_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral oblique extraocular muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001132] + * musculus obliquus inferior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_oblique_muscle ] + * obliquus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49040 ] + * obliquus oculi inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_oblique_muscle ] + * ventral oblique extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001132 ] + * musculus obliquus inferior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_oblique_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral oblique extraocular muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001132 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001276 * SCTID:181156006 * TAO:0000861 - * UMLS:C0582817 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Oblique_Muscle] + * UMLS:C0582817 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Oblique_Muscle ] * VHOG:0001132 * Wikipedia:Inferior_oblique_muscle * ZFA:0000861 @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006720.md b/md/UBERON/20/UBERON_0006720.md index 866567c41e..2f24fe0c2c 100644 --- a/md/UBERON/20/UBERON_0006720.md +++ b/md/UBERON/20/UBERON_0006720.md @@ -6,7 +6,7 @@ ## Synonyms - * pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25139[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25139, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * pterygoideus * pterygoideus muscle @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010730 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006820.md b/md/UBERON/20/UBERON_0006820.md index f7d159abdc..a7b2618340 100644 --- a/md/UBERON/20/UBERON_0006820.md +++ b/md/UBERON/20/UBERON_0006820.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006820 * *Label* = body of sternum - * *Definition* = The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_sternum] + * *Definition* = The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012512, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_sternum ] * *Comment* = AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] ## Synonyms - * gladiolus of sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7487] - * mesosternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7487] - * sternal body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7487] + * gladiolus of sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7487 ] + * mesosternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7487 ] + * sternal body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7487 ] * gladiolus - * body of the sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_sternum] - * corpus sterni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_sternum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * body of the sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_sternum ] + * corpus sterni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_sternum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Proximal portion of the sternum, usually elaborated into a stylum that may be ossified.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0006920.md b/md/UBERON/20/UBERON_0006920.md index 00cdc597bc..419b54880f 100644 --- a/md/UBERON/20/UBERON_0006920.md +++ b/md/UBERON/20/UBERON_0006920.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006920 * *Label* = esophagus squamous epithelium - * *Definition* = A squamous epithelium that is part of a esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A squamous epithelium that is part of a esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = MA introduces basal and squamous subtypes of esophagus epithelium; consider adding the FMA class 'epithelium of esophagus' here, because it is classified as squamous. BTO also has a singleton subclass ## Synonyms - * esophageal squamous epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * squamous epithelium of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * squamous oesophageal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001567] + * esophageal squamous epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * squamous epithelium of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * squamous oesophageal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001567 ] ## Cross-references * BTO:0003635 * CALOHA:TS-1250 * MA:0001567 - * UMLS:C1707950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Squamous_Epithelium] + * UMLS:C1707950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Squamous_Epithelium ] * ncithesaurus:Esophageal_Squamous_Epithelium ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [squamous epithelium](../../UBERON/14/UBERON_0006914.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0007120.md b/md/UBERON/20/UBERON_0007120.md index 8470bf9651..d8301c9b7d 100644 --- a/md/UBERON/20/UBERON_0007120.md +++ b/md/UBERON/20/UBERON_0007120.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007120 * *Label* = premolar tooth - * *Definition* = The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] + * *Definition* = The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] ## Synonyms - * secondary premolar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55637] - * bicuspid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * bicuspid teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * bicuspid tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * bicuspids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * biscuspid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * dens premolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * dentes premolares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dentes premolares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * mandibular bicuspid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * maxillary bicuspid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * maxillary premolar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * pm3 %28dentistry%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * praemolares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * premolar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * premolar teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * premolar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * premolars [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] - * prmolares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premolar] + * secondary premolar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55637 ] + * bicuspid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * bicuspid teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * bicuspid tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * bicuspids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * biscuspid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * dens premolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * dentes premolares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * dentes premolares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mandibular bicuspid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * maxillary bicuspid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * maxillary premolar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * pm3 %28dentistry%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * praemolares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * premolar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * premolar teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * premolar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * premolars [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] + * prmolares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premolar ] ## Cross-references @@ -33,7 +33,7 @@ * GAID:1261 * MESH:A14.254.860.150 * SCTID:304572005 - * UMLS:C1704302 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bicuspid_Tooth] + * UMLS:C1704302 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bicuspid_Tooth ] * Wikipedia:Premolar * http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png * ncithesaurus:Bicuspid_Tooth @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0007220.md b/md/UBERON/20/UBERON_0007220.md index c88a952dfb..6e204f27bc 100644 --- a/md/UBERON/20/UBERON_0007220.md +++ b/md/UBERON/20/UBERON_0007220.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007220 * *Label* = late embryonic stage - * *Definition* = Am embryo stage that covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad] + * *Definition* = Am embryo stage that covers late steps of the embryogenesis with a fully formed embryo still developing before birth or egg hatching. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad ] ## Synonyms - * embryo late (growth) stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000399] - * fetal stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fetus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000399] - * fetus stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * embryo late growth stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000449] - * embryo late stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000449] + * embryo late (growth) stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000399 ] + * fetal stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fetus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000399 ] + * fetus stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * embryo late growth stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000449 ] + * embryo late stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000449 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0007820.md b/md/UBERON/20/UBERON_0007820.md index fc4748056e..fd9a51f81a 100644 --- a/md/UBERON/20/UBERON_0007820.md +++ b/md/UBERON/20/UBERON_0007820.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007820 * *Label* = accessory nasal cartilage - * *Definition* = small cartilages of the nose connecting the greater alar cartilage and lateral nasal cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_nasal_cartilages] + * *Definition* = small cartilages of the nose connecting the greater alar cartilage and lateral nasal cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_nasal_cartilages ] ## Synonyms - * cartilago nasi accessoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_nasal_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cartilago nasi accessoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_nasal_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0008320.md b/md/UBERON/20/UBERON_0008320.md index e12ea8412a..42b11add35 100644 --- a/md/UBERON/20/UBERON_0008320.md +++ b/md/UBERON/20/UBERON_0008320.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008320 * *Label* = common penile artery - * *Definition* = The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Penile_artery] + * *Definition* = The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Penile_artery ] * *Comment* = todo - split generic structure from arterial tree ## Synonyms - * artery of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66318] - * penile artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005085] + * artery of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66318 ] + * penile artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005085 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0008420.md b/md/UBERON/20/UBERON_0008420.md index b10d41f5b8..aaa1f855c2 100644 --- a/md/UBERON/20/UBERON_0008420.md +++ b/md/UBERON/20/UBERON_0008420.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008420 * *Label* = buccal epithelium - * *Definition* = An epithelium that is part of a buccal mucosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a buccal mucosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [buccal mucosa](../../UBERON/56/UBERON_0006956.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0008820.md b/md/UBERON/20/UBERON_0008820.md index 7ecb4646e3..6c419c4216 100644 --- a/md/UBERON/20/UBERON_0008820.md +++ b/md/UBERON/20/UBERON_0008820.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008820 * *Label* = anterior mediastinum - * *Definition* = The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_mediastinum] + * *Definition* = The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_mediastinum ] ## Synonyms - * anterior mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9838] - * mediastinum anterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_mediastinum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9838 ] + * mediastinum anterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_mediastinum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:9838 * SCTID:261048003 - * UMLS:C0230148 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Mediastinum] + * UMLS:C0230148 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Mediastinum ] * Wikipedia:Anterior_mediastinum * http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png * ncithesaurus:Anterior_Mediastinum @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0008920.md b/md/UBERON/20/UBERON_0008920.md index 5c6b103eb0..e556cf439b 100644 --- a/md/UBERON/20/UBERON_0008920.md +++ b/md/UBERON/20/UBERON_0008920.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0010378 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008920 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_0009020.md b/md/UBERON/20/UBERON_0009020.md index 58b49944ac..202f946f10 100644 --- a/md/UBERON/20/UBERON_0009020.md +++ b/md/UBERON/20/UBERON_0009020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009020 * *Label* = left uterine horn - * *Definition* = An uterine horn that is in the left side of a uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An uterine horn that is in the left side of a uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [uterus](../../UBERON/95/UBERON_0000995.md) and [uterine horn](../../UBERON/47/UBERON_0002247.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0009120.md b/md/UBERON/20/UBERON_0009120.md index 8d6f9d8372..42dcfedae6 100644 --- a/md/UBERON/20/UBERON_0009120.md +++ b/md/UBERON/20/UBERON_0009120.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009120 * *Label* = gill filament - * *Definition* = Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http:www.briancoad.com/Dictionary/G.htm] + * *Definition* = Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http:www.briancoad.com/Dictionary/G.htm ] ## Synonyms - * gill filaments [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000667[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * gill filaments [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000667, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0009620.md b/md/UBERON/20/UBERON_0009620.md index 8b09d72795..811e3a32ab 100644 --- a/md/UBERON/20/UBERON_0009620.md +++ b/md/UBERON/20/UBERON_0009620.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0009720.md b/md/UBERON/20/UBERON_0009720.md index e6e006ba77..27dcf6a9df 100644 --- a/md/UBERON/20/UBERON_0009720.md +++ b/md/UBERON/20/UBERON_0009720.md @@ -6,8 +6,8 @@ ## Synonyms - * anterior buccal siphon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073] - * buccal siphon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0030229073] + * anterior buccal siphon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073 ] + * buccal siphon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0030229073 ] * branchial siphon * pharyngeal siphon @@ -32,9 +32,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009720 * *[depicted_by](../../depicted/by/depicted_by.md)* = http://content61.eol.org/content/2010/04/23/02/32371_orig.jpg +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_0009920.md b/md/UBERON/20/UBERON_0009920.md index 17bbf56df9..cfdfc199de 100644 --- a/md/UBERON/20/UBERON_0009920.md +++ b/md/UBERON/20/UBERON_0009920.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009920 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0010020.md b/md/UBERON/20/UBERON_0010020.md index c3abc2010b..3bfec5cd8d 100644 --- a/md/UBERON/20/UBERON_0010020.md +++ b/md/UBERON/20/UBERON_0010020.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010020 * *Label* = tubotympanic recess epithelium - * *Definition* = The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001297] + * *Definition* = The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001297 ] ## Synonyms - * tubotympanic recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001297] + * tubotympanic recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001297 ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:17002 * MA:0001218 * SCTID:361516008 - * UMLS:C1284046 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tubotympanic_Recess] + * UMLS:C1284046 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tubotympanic_Recess ] * VHOG:0001297 * ncithesaurus:Tubotympanic_Recess @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0010220.md b/md/UBERON/20/UBERON_0010220.md index b748f8ae12..1488dc02a7 100644 --- a/md/UBERON/20/UBERON_0010220.md +++ b/md/UBERON/20/UBERON_0010220.md @@ -6,7 +6,7 @@ ## Synonyms - * arytenoid swelling pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17387] + * arytenoid swelling pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17387 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0010420.md b/md/UBERON/20/UBERON_0010420.md index eeca22344a..3b8c215614 100644 --- a/md/UBERON/20/UBERON_0010420.md +++ b/md/UBERON/20/UBERON_0010420.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010420 * *Label* = lymph node follicular corona - * *Definition* = A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/7] + * *Definition* = A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/7 ] ## Synonyms - * lymph node B cell corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * lymph node dark zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * lymph node follicular mantle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002990] - * lymph node inactive zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * lymph node peripheral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * lymph node B cell corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * lymph node dark zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * lymph node follicular mantle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002990 ] + * lymph node inactive zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * lymph node peripheral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) and [secondary follicle corona](../../UBERON/55/UBERON_0010755.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0010520.md b/md/UBERON/20/UBERON_0010520.md index ff3535b8ca..9845eafecd 100644 --- a/md/UBERON/20/UBERON_0010520.md +++ b/md/UBERON/20/UBERON_0010520.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010520 * *Label* = head electric organ - * *Definition* = An electric organ that is part of a head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An electric organ that is part of a head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: electric ray ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [electric organ](../../UBERON/69/UBERON_0006869.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0010720.md b/md/UBERON/20/UBERON_0010720.md index 3c916824c4..3afb852a8a 100644 --- a/md/UBERON/20/UBERON_0010720.md +++ b/md/UBERON/20/UBERON_0010720.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010720 * *Label* = hindlimb zeugopod skeleton - * *Definition* = Subdivision of skeleton consisting of all skeletal elements in an hindlimb zeugopod region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton consisting of all skeletal elements in an hindlimb zeugopod region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * crus skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni] + * crus skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni ] * hindlimb zygopod skeleton * posterior zeugopodium skeleton - * hind epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000216] - * hindlimb epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005014[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] - * posterior zeugopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005014[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * hind epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000216 ] + * hindlimb epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005014, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] + * posterior zeugopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005014, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the leg corresponding to the tibia and fibula.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0011120.md b/md/UBERON/20/UBERON_0011120.md index d01ae9fdd3..b7a0a1f2af 100644 --- a/md/UBERON/20/UBERON_0011120.md +++ b/md/UBERON/20/UBERON_0011120.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011120 * *Label* = laryngeal joint - * *Definition* = A skeletal joint that connects a laryngeal cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a laryngeal cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * joint of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55100] - * laryngeal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55100] + * joint of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55100 ] + * laryngeal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55100 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [laryngeal cartilage](../../UBERON/39/UBERON_0001739.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0011220.md b/md/UBERON/20/UBERON_0011220.md index 9d73dc2ea1..17db703fd5 100644 --- a/md/UBERON/20/UBERON_0011220.md +++ b/md/UBERON/20/UBERON_0011220.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011220 * *Label* = mastoid process of temporal bone - * *Definition* = The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mastoid_process] + * *Definition* = The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mastoid_process ] ## Synonyms - * mastoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52872] + * mastoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52872 ] * mastoid process of skull - * mastoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mastoid_process] - * processus mastoideus ossis temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mastoid_process] + * mastoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mastoid_process ] + * processus mastoideus ossis temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mastoid_process ] ## Cross-references * FMA:52872 * SCTID:304336002 - * UMLS:C0446908 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mastoid_Process] + * UMLS:C0446908 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mastoid_Process ] * Wikipedia:Mastoid_process * ncithesaurus:Mastoid_Process @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0011320.md b/md/UBERON/20/UBERON_0011320.md index c59040253c..dec15ad3ab 100644 --- a/md/UBERON/20/UBERON_0011320.md +++ b/md/UBERON/20/UBERON_0011320.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011320 * *Label* = ligament of temporomandibular joint - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporomandibular_joint#Ligaments] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporomandibular_joint#Ligaments ] ## Synonyms - * temporomandibular joint ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57070] + * temporomandibular joint ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57070 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [temporomandibular joint](../../UBERON/00/UBERON_0003700.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0011620.md b/md/UBERON/20/UBERON_0011620.md index 1c2425eada..57ad4ec066 100644 --- a/md/UBERON/20/UBERON_0011620.md +++ b/md/UBERON/20/UBERON_0011620.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011620 * *Label* = basihyal lingual process - * *Definition* = A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1080] + * *Definition* = A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1080 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0011820.md b/md/UBERON/20/UBERON_0011820.md index 2bbfc30f3e..3c83c9caf6 100644 --- a/md/UBERON/20/UBERON_0011820.md +++ b/md/UBERON/20/UBERON_0011820.md @@ -6,6 +6,8 @@ ## Synonyms + * atrial ventricular junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003294 ] + * atrioventricular junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003294 ] ## Cross-references @@ -19,6 +21,8 @@ * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) * [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Equivalencies @@ -28,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011820 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0012120.md b/md/UBERON/20/UBERON_0012120.md index 54f94eed95..c1561615cc 100644 --- a/md/UBERON/20/UBERON_0012120.md +++ b/md/UBERON/20/UBERON_0012120.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012120 * *Label* = vinculum of tendon - * *Definition* = Organ component cluster which consists of a tendinous vinculum surrounded by synovial membrane of the synovial tendon sheath. Examples: short vinculum of tendon of flexor digitorum superficialis, long vinculum of tendon of flexor digitorum profundus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42604[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vincula_tendina] + * *Definition* = Organ component cluster which consists of a tendinous vinculum surrounded by synovial membrane of the synovial tendon sheath. Examples: short vinculum of tendon of flexor digitorum superficialis, long vinculum of tendon of flexor digitorum profundus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42604, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vincula_tendina ] * *Comment* = This is not classified as a tendon in FMA ## Synonyms - * tendon vinculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42604] + * tendon vinculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42604 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0012320.md b/md/UBERON/20/UBERON_0012320.md index 602ae435d2..8388643bac 100644 --- a/md/UBERON/20/UBERON_0012320.md +++ b/md/UBERON/20/UBERON_0012320.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012320 * *Label* = cervical artery - * *Definition* = An artery of the neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An artery of the neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms ## Cross-references - * UMLS:C1707349 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Artery] + * UMLS:C1707349 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Artery ] * ncithesaurus:Cervical_Artery ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012320 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0012420.md b/md/UBERON/20/UBERON_0012420.md index bb06e59479..e7f3575ae6 100644 --- a/md/UBERON/20/UBERON_0012420.md +++ b/md/UBERON/20/UBERON_0012420.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012420 * *Label* = coprodeum - * *Definition* = Most proximal cloacal compartment, into which the large intestine empties[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Most proximal cloacal compartment, into which the large intestine empties[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = coprodeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0012520.md b/md/UBERON/20/UBERON_0012520.md index db577b4ab7..eab1b3ebaa 100644 --- a/md/UBERON/20/UBERON_0012520.md +++ b/md/UBERON/20/UBERON_0012520.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012520 * *Label* = forelimb epitrochlearis muscle - * *Definition* = The superficial-most muscle of the anterior surface of the arm is the epitrochlearis. It has no homolog in humans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://biology.clc.uc.edu] + * *Definition* = The superficial-most muscle of the anterior surface of the arm is the epitrochlearis. It has no homolog in humans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://biology.clc.uc.edu ] ## Synonyms - * epitrochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000423] - * wing epitrochlearis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * epitrochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000423 ] + * wing epitrochlearis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012520 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0013120.md b/md/UBERON/20/UBERON_0013120.md index 26fe9351dd..11c5c0d634 100644 --- a/md/UBERON/20/UBERON_0013120.md +++ b/md/UBERON/20/UBERON_0013120.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0013220.md b/md/UBERON/20/UBERON_0013220.md index 67ce786d89..6bcd7c50da 100644 --- a/md/UBERON/20/UBERON_0013220.md +++ b/md/UBERON/20/UBERON_0013220.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013220 * *Label* = foramen of Panizza - * *Definition* = The Foramen of Panizza is a hole with that connects the left and right aorta as they leave the heart of all animals of the order Crocodilia. Crocodilians have a completely separated ventricle with deoxygenated blood from the body, or systemic circulation, in the right ventricle and oxygenated blood from the lungs, or pulmonary circulation, in the left ventricle, as in birds and mammals. Two vessels, the left aorta and the pulmonary artery, exit the right ventricle. Blood from the right ventricle goes to the lungs through the pulmonary artery, as in mammals and birds. However, when a unique active valve leading to the pulmonary artery contracts, pressure in the right ventricle can increase and blood can leave the right ventricle, enter the left aortic arch, and therefore bypass the pulmonary circulation. The foramen of panizza connects the left and right aorta. Deoxygenated blood from the right ventricle, sitting in the left aorta, can flow into the right aorta through the foramen of panizza. When the heart is relaxed, some oxygenated blood from the left ventricle, sitting in the right aorta, can flow into the left aorta across the foramen of panizza. However, some species of Crocodilians have regulatory sphincters that prevent unwanted flow of blood through the foramen of panizza during non-diving. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_of_Panizza] + * *Definition* = The Foramen of Panizza is a hole with that connects the left and right aorta as they leave the heart of all animals of the order Crocodilia. Crocodilians have a completely separated ventricle with deoxygenated blood from the body, or systemic circulation, in the right ventricle and oxygenated blood from the lungs, or pulmonary circulation, in the left ventricle, as in birds and mammals. Two vessels, the left aorta and the pulmonary artery, exit the right ventricle. Blood from the right ventricle goes to the lungs through the pulmonary artery, as in mammals and birds. However, when a unique active valve leading to the pulmonary artery contracts, pressure in the right ventricle can increase and blood can leave the right ventricle, enter the left aortic arch, and therefore bypass the pulmonary circulation. The foramen of panizza connects the left and right aorta. Deoxygenated blood from the right ventricle, sitting in the left aorta, can flow into the right aorta through the foramen of panizza. When the heart is relaxed, some oxygenated blood from the left ventricle, sitting in the right aorta, can flow into the left aorta across the foramen of panizza. However, some species of Crocodilians have regulatory sphincters that prevent unwanted flow of blood through the foramen of panizza during non-diving. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_of_Panizza ] ## Synonyms @@ -28,11 +28,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013220 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0013420.md b/md/UBERON/20/UBERON_0013420.md index 2f63676f79..299367070c 100644 --- a/md/UBERON/20/UBERON_0013420.md +++ b/md/UBERON/20/UBERON_0013420.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013420 * *Label* = groove for sigmoid sinus - * *Definition* = Groove for Sigmoid Sinus is a groove in the posterior cranial fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Groove_for_sigmoid_sinus] + * *Definition* = Groove for Sigmoid Sinus is a groove in the posterior cranial fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Groove_for_sigmoid_sinus ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013420 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0013620.md b/md/UBERON/20/UBERON_0013620.md index 140311fad8..19e23653d5 100644 --- a/md/UBERON/20/UBERON_0013620.md +++ b/md/UBERON/20/UBERON_0013620.md @@ -6,7 +6,7 @@ ## Synonyms - * lower deciduous molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84213] + * lower deciduous molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84213 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) and [primary molar tooth](../../UBERON/16/UBERON_0013616.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0013720.md b/md/UBERON/20/UBERON_0013720.md index f9c7277d7e..b5311644de 100644 --- a/md/UBERON/20/UBERON_0013720.md +++ b/md/UBERON/20/UBERON_0013720.md @@ -7,7 +7,7 @@ ## Synonyms * dartos layer of labia - * dartos muliebris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dartos] + * dartos muliebris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dartos ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dartos muscle](../../UBERON/18/UBERON_0013718.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0014620.md b/md/UBERON/20/UBERON_0014620.md index 17ff026666..28d7c5cba5 100644 --- a/md/UBERON/20/UBERON_0014620.md +++ b/md/UBERON/20/UBERON_0014620.md @@ -6,14 +6,14 @@ ## Synonyms - * cervical spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1673[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * cervical spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1673] + * cervical spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1673, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * cervical spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1673 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1673 * SCTID:362439001 - * UMLS:C0228611 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1673] + * UMLS:C0228611 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1673 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal horn of spinal cord](../../UBERON/56/UBERON_0002256.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014620 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0014720.md b/md/UBERON/20/UBERON_0014720.md index a36a982a94..aa1e4d3a9f 100644 --- a/md/UBERON/20/UBERON_0014720.md +++ b/md/UBERON/20/UBERON_0014720.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014720 * *Label* = interlobar duct - * *Definition* = A duct that is located etween lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = A duct that is located etween lobes, within conspicuous, thick connective tissue septa that separate lobes. All interlobar ducts are excretory. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [lobe](../../UBERON/52/UBERON_3010752.md) and [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [connective tissue](../../UBERON/84/UBERON_0002384.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014720 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_0015020.md b/md/UBERON/20/UBERON_0015020.md index 4a0ae06213..12316f0ea5 100644 --- a/md/UBERON/20/UBERON_0015020.md +++ b/md/UBERON/20/UBERON_0015020.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015020 * *Label* = otic capsule endochondral element - * *Definition* = A otic capsule bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A otic capsule bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * otic capsule element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * otic capsule skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * otic capsule element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * otic capsule skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [otic capsule cartilage element](../../UBERON/51/UBERON_0010351.md)or[otic capsule pre-cartilage condensation](../../UBERON/49/UBERON_0010349.md)or[otic capsule](../../UBERON/37/UBERON_0004637.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_1000020.md b/md/UBERON/20/UBERON_1000020.md index 96caf3a43d..a0faec28cf 100644 --- a/md/UBERON/20/UBERON_1000020.md +++ b/md/UBERON/20/UBERON_1000020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000020 * *Label* = collection of hair on snout - * *Definition* = A collection of hairs that grows on the snout. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A collection of hairs that grows on the snout. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hair on face](../../UBERON/65/UBERON_0010165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [snout](../../UBERON/33/UBERON_0006333.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = eriks * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-02-05T05:21:29Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000020 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2000120.md b/md/UBERON/20/UBERON_2000120.md index b410075686..94338fd247 100644 --- a/md/UBERON/20/UBERON_2000120.md +++ b/md/UBERON/20/UBERON_2000120.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000120 * *Label* = lateral line ganglion - * *Definition* = Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000120[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000120, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms - * LLG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000120[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral line ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000120[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * LLG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000120, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral line ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000120, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cranial ganglion](../../UBERON/14/UBERON_0001714.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral line system](../../UBERON/40/UBERON_0002540.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2000120 + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2000520.md b/md/UBERON/20/UBERON_2000520.md index 0c616dba23..6886399700 100644 --- a/md/UBERON/20/UBERON_2000520.md +++ b/md/UBERON/20/UBERON_2000520.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2000620.md b/md/UBERON/20/UBERON_2000620.md index c0ec59ec55..662f91a6a5 100644 --- a/md/UBERON/20/UBERON_2000620.md +++ b/md/UBERON/20/UBERON_2000620.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000620 * *Label* = autopalatine - * *Definition* = Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The cartilaginous autopalatine forms from the anterior palatoquadrate arch. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). ## Synonyms - * palatines [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000620[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * palatine bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000620] + * palatines [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000620, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * palatine bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000620 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2000720.md b/md/UBERON/20/UBERON_2000720.md index 6fad45fdc1..8dccaa71cb 100644 --- a/md/UBERON/20/UBERON_2000720.md +++ b/md/UBERON/20/UBERON_2000720.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000720[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000720, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_2000820.md b/md/UBERON/20/UBERON_2000820.md index c5a5f6b391..f8d8044d9f 100644 --- a/md/UBERON/20/UBERON_2000820.md +++ b/md/UBERON/20/UBERON_2000820.md @@ -6,7 +6,7 @@ ## Synonyms - * presumptive neurons neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000820[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * presumptive neurons neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000820, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2000920.md b/md/UBERON/20/UBERON_2000920.md index 20351ede50..a467106036 100644 --- a/md/UBERON/20/UBERON_2000920.md +++ b/md/UBERON/20/UBERON_2000920.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000920[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000920, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_2001020.md b/md/UBERON/20/UBERON_2001020.md index 213b4a64b3..a4177e8c7c 100644 --- a/md/UBERON/20/UBERON_2001020.md +++ b/md/UBERON/20/UBERON_2001020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001020 * *Label* = myotome somite 30 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001220.md b/md/UBERON/20/UBERON_2001220.md index 7134d582ac..1b9f171fc3 100644 --- a/md/UBERON/20/UBERON_2001220.md +++ b/md/UBERON/20/UBERON_2001220.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001220 * *Label* = basibranchial copula - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * copula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001220] - * copulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001220[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * copula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001220 ] + * copulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001220, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001420.md b/md/UBERON/20/UBERON_2001420.md index 341f3133f8..065de79587 100644 --- a/md/UBERON/20/UBERON_2001420.md +++ b/md/UBERON/20/UBERON_2001420.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001420 * *Label* = anal fin pterygiophore - * *Definition* = A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anal fin pterygiophores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001420[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * anal fin pterygiophores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001420, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001520.md b/md/UBERON/20/UBERON_2001520.md index c50f82de15..425c995250 100644 --- a/md/UBERON/20/UBERON_2001520.md +++ b/md/UBERON/20/UBERON_2001520.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001520 * *Label* = ceratobranchial 1 cartilage - * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001620.md b/md/UBERON/20/UBERON_2001620.md index 7da3164854..e8759f1c61 100644 --- a/md/UBERON/20/UBERON_2001620.md +++ b/md/UBERON/20/UBERON_2001620.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001620 * *Label* = lagenar capsule - * *Definition* = Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001720.md b/md/UBERON/20/UBERON_2001720.md index de10023ac3..bcdaadb97d 100644 --- a/md/UBERON/20/UBERON_2001720.md +++ b/md/UBERON/20/UBERON_2001720.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001720 * *Label* = caudal principal ray 8 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001820.md b/md/UBERON/20/UBERON_2001820.md index 712b3e686c..651016feae 100644 --- a/md/UBERON/20/UBERON_2001820.md +++ b/md/UBERON/20/UBERON_2001820.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001820 * *Label* = posterior nuchal plate - * *Definition* = Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * third nuchal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001820] + * third nuchal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001820 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2001920.md b/md/UBERON/20/UBERON_2001920.md index 3564c08749..684cbc0ff8 100644 --- a/md/UBERON/20/UBERON_2001920.md +++ b/md/UBERON/20/UBERON_2001920.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001920 * *Label* = pseudotympanum - * *Definition* = Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * humeral hiatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001920] + * humeral hiatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001920 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2002020.md b/md/UBERON/20/UBERON_2002020.md index 2e18ea33b8..4e9167b0cc 100644 --- a/md/UBERON/20/UBERON_2002020.md +++ b/md/UBERON/20/UBERON_2002020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002020 * *Label* = hypomaxilla - * *Definition* = Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:ga_tg] + * *Definition* = Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:ga_tg ] * *Comment* = Hypomaxilla is a bone restricted to some clupeiforms. See Berry (1964) for a detailed account of the distribution of the hypomaxilla within clupeiforms and specifically in Herengula. ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2002120.md b/md/UBERON/20/UBERON_2002120.md index 115c67a5bd..ff83223971 100644 --- a/md/UBERON/20/UBERON_2002120.md +++ b/md/UBERON/20/UBERON_2002120.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2005020.md b/md/UBERON/20/UBERON_2005020.md index 707569ec2d..4f45c8ad1b 100644 --- a/md/UBERON/20/UBERON_2005020.md +++ b/md/UBERON/20/UBERON_2005020.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005020 * *Label* = central artery - * *Definition* = Arteries that irrigate the forebrain and midbrain Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Arteries that irrigate the forebrain and midbrain Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * CtA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005020] + * CtA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005020 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2005220.md b/md/UBERON/20/UBERON_2005220.md index 63e55658cf..34ae055ed4 100644 --- a/md/UBERON/20/UBERON_2005220.md +++ b/md/UBERON/20/UBERON_2005220.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_2005320.md b/md/UBERON/20/UBERON_2005320.md index 40dd101b54..afd7f35a22 100644 --- a/md/UBERON/20/UBERON_2005320.md +++ b/md/UBERON/20/UBERON_2005320.md @@ -6,7 +6,7 @@ ## Synonyms - * dllv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005320] + * dllv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005320 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3000020.md b/md/UBERON/20/UBERON_3000020.md index 3d4bddb56b..f4d65f1668 100644 --- a/md/UBERON/20/UBERON_3000020.md +++ b/md/UBERON/20/UBERON_3000020.md @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3000720.md b/md/UBERON/20/UBERON_3000720.md index 779c5eb7b4..00f9d2e999 100644 --- a/md/UBERON/20/UBERON_3000720.md +++ b/md/UBERON/20/UBERON_3000720.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000720 * *Label* = stegochordal - * *Definition* = Vertebral centrum that is depressed dorsoventrally and solid. All traces of the notochord dissapear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Griffiths_1959] + * *Definition* = Vertebral centrum that is depressed dorsoventrally and solid. All traces of the notochord dissapear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Griffiths_1959 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3000820.md b/md/UBERON/20/UBERON_3000820.md index 10e7736dbb..58564655ed 100644 --- a/md/UBERON/20/UBERON_3000820.md +++ b/md/UBERON/20/UBERON_3000820.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000820 * *Label* = margo posterior of scapula - * *Definition* = Posterior margin of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior margin of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3010220.md b/md/UBERON/20/UBERON_3010220.md index a77ff4c670..58edb34760 100644 --- a/md/UBERON/20/UBERON_3010220.md +++ b/md/UBERON/20/UBERON_3010220.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010220 * *Label* = obsolete orbital region - * *Definition* = An anatomical cluster that is part of the cranium and structurally supports the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = An anatomical cluster that is part of the cranium and structurally supports the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001697 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_3010320.md b/md/UBERON/20/UBERON_3010320.md index af1b8cb5c4..5f90798934 100644 --- a/md/UBERON/20/UBERON_3010320.md +++ b/md/UBERON/20/UBERON_3010320.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010320 * *Label* = obsolete xanthophore - * *Definition* = A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000430 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/20/UBERON_3010520.md b/md/UBERON/20/UBERON_3010520.md index e538438514..2c3a3b754a 100644 --- a/md/UBERON/20/UBERON_3010520.md +++ b/md/UBERON/20/UBERON_3010520.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010520 * *Label* = oviducal vein - * *Definition* = Vein which collects blood from the oviduct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Vein which collects blood from the oviduct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3010620.md b/md/UBERON/20/UBERON_3010620.md index a24111a0dd..17089b6150 100644 --- a/md/UBERON/20/UBERON_3010620.md +++ b/md/UBERON/20/UBERON_3010620.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010620 * *Label* = dilatator laryngis - * *Definition* = Involved in the movement of the arytenoid cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Involved in the movement of the arytenoid cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3010720.md b/md/UBERON/20/UBERON_3010720.md index 37d0e67faf..33fb826c9f 100644 --- a/md/UBERON/20/UBERON_3010720.md +++ b/md/UBERON/20/UBERON_3010720.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010720 * *Label* = ramus hyomandibularis - * *Definition* = The posttrematic branch of the facial nerve, both motor and sensory in function. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:CAM] + * *Definition* = The posttrematic branch of the facial nerve, both motor and sensory in function. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:CAM ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3010820.md b/md/UBERON/20/UBERON_3010820.md index db6fe9775c..81a7b20ecd 100644 --- a/md/UBERON/20/UBERON_3010820.md +++ b/md/UBERON/20/UBERON_3010820.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_3011120.md b/md/UBERON/20/UBERON_3011120.md index 230dd1909e..d3b9296911 100644 --- a/md/UBERON/20/UBERON_3011120.md +++ b/md/UBERON/20/UBERON_3011120.md @@ -6,7 +6,7 @@ ## Synonyms - * PT2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3011120] + * PT2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3011120 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2011-04-20T05:19:55Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_4000020.md b/md/UBERON/20/UBERON_4000020.md index d48046e604..5494ca7cdf 100644 --- a/md/UBERON/20/UBERON_4000020.md +++ b/md/UBERON/20/UBERON_4000020.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000020 * *Label* = mineralized extracellular matrix - * *Definition* = Extracellular matrix that is mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Extracellular matrix that is mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_4000120.md b/md/UBERON/20/UBERON_4000120.md index 5e5830c834..b3c0c3f531 100644 --- a/md/UBERON/20/UBERON_4000120.md +++ b/md/UBERON/20/UBERON_4000120.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000120 * *Label* = mineralized avascular GAG-rich matrix - * *Definition* = Avascular GAG-rich matrix that is mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Avascular GAG-rich matrix that is mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_4200020.md b/md/UBERON/20/UBERON_4200020.md index faffa2e271..53a62ee7e0 100644 --- a/md/UBERON/20/UBERON_4200020.md +++ b/md/UBERON/20/UBERON_4200020.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_4200120.md b/md/UBERON/20/UBERON_4200120.md index b615d94984..897c5446e7 100644 --- a/md/UBERON/20/UBERON_4200120.md +++ b/md/UBERON/20/UBERON_4200120.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/20/UBERON_4300020.md b/md/UBERON/20/UBERON_4300020.md index 1204374032..3686efb62f 100644 --- a/md/UBERON/20/UBERON_4300020.md +++ b/md/UBERON/20/UBERON_4300020.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0000021.md b/md/UBERON/21/UBERON_0000021.md index 215eca41d5..48d6df094b 100644 --- a/md/UBERON/21/UBERON_0000021.md +++ b/md/UBERON/21/UBERON_0000021.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000021 * *Label* = cutaneous appendage - * *Definition* = Anatomical projection that protrudes from the skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Anatomical projection that protrudes from the skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Examples: hair, nail (FMA); feather, claw, hoof, horn, wattle, spur, beak, scale(?), antler, bristle. Editors note: Mammary glands develop by similar mechanisms, and there is an argument for including them here (e.g. PMID:20484386), but these structures do not fit the current definition (lactiferous glands are part of the integumentary system in FMA). Note the FMA class is a subdivision of epidermis, which may be too restrictive for our purposes here. TODO: revise after definition of appendage is finalized in CARO2; in addition, verify subtypes w.r.t definition - e.g. beaks may overlap with skin of body rather than being part of it - rhamphotheca may be more appropriate ## Synonyms - * skin appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71012] + * skin appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71012 ] * epidermal appendage * epidermal growth @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0000121.md b/md/UBERON/21/UBERON_0000121.md index 3edf5ac78f..3f890a6850 100644 --- a/md/UBERON/21/UBERON_0000121.md +++ b/md/UBERON/21/UBERON_0000121.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000121 * *Label* = perineurium - * *Definition* = A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090205] + * *Definition* = A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090205 ] * *Comment* = consider FBbt:00007090 (perineurium): The outer two layers of glial cells that cover the central nervous system and the nerves. The outer layer is the perineurial sheath (sometimes referred to as the perineurial sheath outer layer); the inner layer is the sub-perineural glial sheath (sometimes referred to as the perineurial sheath inner layer) ## Synonyms @@ -15,7 +15,7 @@ * FMA:52585 * NIF_GrossAnatomy:nlx_anat_090205 * SCTID:362299001 - * UMLS:C0205890 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perineurium] + * UMLS:C0205890 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perineurium ] * Wikipedia:Perineurium * http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Connective tissue surrounding a fascicle[Wikipedia:Perineurium]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0000221.md b/md/UBERON/21/UBERON_0000221.md index 435c00442c..ff13527026 100644 --- a/md/UBERON/21/UBERON_0000221.md +++ b/md/UBERON/21/UBERON_0000221.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000221 * *Label* = supraauricular point - * *Definition* = a craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=70620] + * *Definition* = a craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=70620 ] ## Synonyms - * supra-auricular part of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:224222] + * supra-auricular part of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:224222 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0000921.md b/md/UBERON/21/UBERON_0000921.md index 51101b0514..b8dd2d5cef 100644 --- a/md/UBERON/21/UBERON_0000921.md +++ b/md/UBERON/21/UBERON_0000921.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000921 * *Label* = obsolete pronucleus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronucleus] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronucleus ] ## Synonyms @@ -30,9 +30,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000048 * *[consider](../../er/oboInOwl#consider.md)* = FMA:84673 * *[consider](../../er/oboInOwl#consider.md)* = GO:0045120 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000921 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_0001021.md b/md/UBERON/21/UBERON_0001021.md index 3b823f6239..e62c086edd 100644 --- a/md/UBERON/21/UBERON_0001021.md +++ b/md/UBERON/21/UBERON_0001021.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001021 * *Label* = nerve - * *Definition* = an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65132[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007009[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65132, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007009, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment ## Synonyms - * nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007009[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * neural subtree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65132] + * nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007009, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * neural subtree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65132 ] ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA * SCTID:256864008 * TAO:0007009 - * UMLS:C0027740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nerve] + * UMLS:C0027740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nerve ] * Wikipedia:Nervous_system * XAO:0003047 * ZFA:0007009 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A portion of tissue which is a fasiculated group of axons.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = nervous - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001121.md b/md/UBERON/21/UBERON_0001121.md index c3b291fad4..c3ad0a3383 100644 --- a/md/UBERON/21/UBERON_0001121.md +++ b/md/UBERON/21/UBERON_0001121.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001121 * *Label* = longus colli muscle - * *Definition* = The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebr and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebr; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebr. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebr, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebr. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_colli_muscle] + * *Definition* = The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebr and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebr; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebr. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebr, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebr. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_colli_muscle ] ## Synonyms - * longus colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002341] - * longus colli muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_colli_muscle] - * longi colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_colli_muscle] - * musculus longus colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_colli_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * longus colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002341 ] + * longus colli muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_colli_muscle ] + * longi colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_colli_muscle ] + * musculus longus colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_colli_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:13370 * MA:0002341 * SCTID:244836009 - * UMLS:C0224169 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longus_Colli] + * UMLS:C0224169 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longus_Colli ] * Wikipedia:Longus_colli_muscle * http://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001221.md b/md/UBERON/21/UBERON_0001221.md index 2eb988f3f8..ccd6c1e482 100644 --- a/md/UBERON/21/UBERON_0001221.md +++ b/md/UBERON/21/UBERON_0001221.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001221 * *Label* = transversus abdominis muscle - * *Definition* = The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] + * *Definition* = The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] ## Synonyms - * musculus transversus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15570[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus transversus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transverse abdominal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15570] - * transversis abdominus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transversus abdominis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transversalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transversalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transverse abdominal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transverse abdominal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transverse abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transverse abdominus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transversus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transversus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transversus abdominus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] - * transversus abdominus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversus_abdominis_muscle] + * musculus transversus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15570, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus transversus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transverse abdominal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15570 ] + * transversis abdominus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transversus abdominis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transversalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transversalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transverse abdominal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transverse abdominal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transverse abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transverse abdominus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transversus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transversus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transversus abdominus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] + * transversus abdominus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversus_abdominis_muscle ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:15570 * MA:0002396 * SCTID:244949003 - * UMLS:C0224378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transversus_Abdominis] + * UMLS:C0224378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transversus_Abdominis ] * VHOG:0000845 * Wikipedia:Transversus_abdominis_muscle * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001321.md b/md/UBERON/21/UBERON_0001321.md index ed4876d057..0e2eacda0b 100644 --- a/md/UBERON/21/UBERON_0001321.md +++ b/md/UBERON/21/UBERON_0001321.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001321 * *Label* = obturator vein - * *Definition* = The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_veins] + * *Definition* = The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:18914 * MA:0002183 * SCTID:20146009 - * UMLS:C0226776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Vein] + * UMLS:C0226776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Vein ] * Wikipedia:Obturator_veins * http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001421.md b/md/UBERON/21/UBERON_0001421.md index 20c5a29e4d..e6b82677a8 100644 --- a/md/UBERON/21/UBERON_0001421.md +++ b/md/UBERON/21/UBERON_0001421.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001421 * *Label* = pectoral girdle region - * *Definition* = An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: Examples: There are only two instances in an organism, right and left pectoral girdle regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23217[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: Examples: There are only two instances in an organism, right and left pectoral girdle regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23217, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that this class describes the organism subdivision, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). ## Synonyms - * cingulum membri superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23217[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cingulum membri superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23217, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * girdle - pectoral - * cingulum membri superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * shoulder girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23217] - * upper limb girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23217] + * cingulum membri superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * shoulder girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23217 ] + * upper limb girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23217 ] * pectoral girdle * pectoral region @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage girdle region](../../UBERON/23/UBERON_0007823.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There is only one instance of the pectoral girdle region per organism.[VSAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Note that this class describes the central subdivision of the pectoral girdle complex, NOT the skeleton within.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001521.md b/md/UBERON/21/UBERON_0001521.md index 71cfff3642..706a725f75 100644 --- a/md/UBERON/21/UBERON_0001521.md +++ b/md/UBERON/21/UBERON_0001521.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001521 * *Label* = flexor carpi radialis muscle - * *Definition* = A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_carpi_radialis_muscle] + * *Definition* = A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_carpi_radialis_muscle ] * *Comment* = AO notes - we group the AAO class here, despite the different insertion site - requires vetting "Muscle which originates on the inner border of the humerus and inserts on the carpus." [AAO:0010733] ## Synonyms - * flexor carpi radialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002297] + * flexor carpi radialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002297 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:38459 * MA:0002297 * SCTID:361816002 - * UMLS:C0224252 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flexor_Carpi_Radialis] + * UMLS:C0224252 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flexor_Carpi_Radialis ] * Wikipedia:Flexor_carpi_radialis_muscle * http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001621.md b/md/UBERON/21/UBERON_0001621.md index deba8b1c72..f2979e6171 100644 --- a/md/UBERON/21/UBERON_0001621.md +++ b/md/UBERON/21/UBERON_0001621.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001621 * *Label* = coronary artery - * *Definition* = An artery that supplies the myocardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_circulation#Coronary_anatomy] + * *Definition* = An artery that supplies the myocardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_circulation#Coronary_anatomy ] ## Synonyms @@ -21,7 +21,7 @@ * MA:0002453 * OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA * SCTID:181294004 - * UMLS:C0205042 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coronary_Artery] + * UMLS:C0205042 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coronary_Artery ] * VHOG:0001557 * Wikipedia:Coronary_circulation#Coronary_anatomy * galen:CoronaryArtery @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001721.md b/md/UBERON/21/UBERON_0001721.md index a5e94b7d63..597d227dd7 100644 --- a/md/UBERON/21/UBERON_0001721.md +++ b/md/UBERON/21/UBERON_0001721.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001721 * *Label* = inferior vestibular nucleus - * *Definition* = The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vestibular_nucleus] + * *Definition* = The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vestibular_nucleus ] ## Synonyms - * descending vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54608] - * spinal vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54608] - * nucleus vestibularis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vestibular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * descending vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54608 ] + * spinal vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54608 ] + * nucleus vestibularis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vestibular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001054 * NeuroNames:718 * SCTID:280175006 - * UMLS:C0175498 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Vestibular_Nucleus] + * UMLS:C0175498 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Vestibular_Nucleus ] * Wikipedia:Inferior_vestibular_nucleus * http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png * ncithesaurus:Spinal_Vestibular_Nucleus @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001821.md b/md/UBERON/21/UBERON_0001821.md index be7bc5159f..c0cec63e9d 100644 --- a/md/UBERON/21/UBERON_0001821.md +++ b/md/UBERON/21/UBERON_0001821.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001821 * *Label* = sebaceous gland - * *Definition* = A holocrine gland that secretes sebum into the hair follicles, or in hairless areas into ducts.[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000647[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sebaceous_gland] + * *Definition* = A holocrine gland that secretes sebum into the hair follicles, or in hairless areas into ducts.[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000647, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sebaceous_gland ] * *Comment* = Usage notes: sebaceous glands are also found in glabrous areas of eyelids, nose, penis, labia minora and nipples, and do not always secrete into hair follices. This causes some confusion in classification. In addition some structures, such as preputial glands are sometimes called 'modified' sebaceous glands, implying a non-subclass relationship. we follow MP and MA in keeping this class generic and creating a distinct subclass for sebaceuous glands of the skin. The FMA class may be better placed under this subclass. ## Synonyms - * glandula sebacea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sebaceous_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandula sebaceae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001980] - * sebaceous follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001980] + * glandula sebacea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sebaceous_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandula sebaceae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001980 ] + * sebaceous follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001980 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002565 * MESH:A10.336.827 * SCTID:361697005 - * UMLS:C0036505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sebaceous_Gland] + * UMLS:C0036505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sebaceous_Gland ] * VHOG:0001468 * Wikipedia:Sebaceous_gland * http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the numerous holocrine glands in the dermis that empty into a hair follicle and produce and secrete sebum. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Sebaceous glands are also limited to mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0001921.md b/md/UBERON/21/UBERON_0001921.md index 1cf16e6744..8255d149dc 100644 --- a/md/UBERON/21/UBERON_0001921.md +++ b/md/UBERON/21/UBERON_0001921.md @@ -10,14 +10,14 @@ * medioventral nucleus * nucleus reuniens * reuniens thalamic nucleus - * Re [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_770[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus endymalis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:309[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of reunions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:309] - * nucleus reuniens (Malone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:309] - * nucleus reuniens rostral division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RE] - * nucleus reuniens thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:309[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * reticular complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RE] - * reuniens nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RE] + * Re [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_770, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus endymalis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:309, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of reunions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:309 ] + * nucleus reuniens (Malone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:309 ] + * nucleus reuniens rostral division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RE ] + * nucleus reuniens thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:309, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * reticular complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RE ] + * reuniens nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RE ] ## Cross-references @@ -27,9 +27,9 @@ * FMA:62153 * MA:0000865 * NIF_GrossAnatomy:birnlex_770 - * NeuroNames:309 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_770] + * NeuroNames:309 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_770 ] * SCTID:369164006 - * UMLS:C0228327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_770] + * UMLS:C0228327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_770 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002021.md b/md/UBERON/21/UBERON_0002021.md index 47846d8ba1..2292c4ab4b 100644 --- a/md/UBERON/21/UBERON_0002021.md +++ b/md/UBERON/21/UBERON_0002021.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002021 * *Label* = occipital lobe - * *Definition* = Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_lobe] + * *Definition* = Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_lobe ] ## Synonyms * occipital cortex - * occipital neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:Ocx] - * regio occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67325[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * occipital neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:Ocx ] + * regio occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67325, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,11 +26,11 @@ * MAT:0000507 * MESH:A08.186.211.730.885.213.571 * NIF_GrossAnatomy:birnlex_1136 - * NeuroNames:140 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1136] + * NeuroNames:140 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1136 ] * OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA * SCTID:180923002 - * UMLS:C0028785 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1136] - * UMLS:C0028785 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Occipital_Lobe] + * UMLS:C0028785 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1136 ] + * UMLS:C0028785 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Occipital_Lobe ] * Wikipedia:Occipital_lobe * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray727_occipital_lobe.png/200px-Gray727_occipital_lobe.png @@ -58,8 +58,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002221.md b/md/UBERON/21/UBERON_0002221.md index 24c23965a3..4205e064e7 100644 --- a/md/UBERON/21/UBERON_0002221.md +++ b/md/UBERON/21/UBERON_0002221.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002221 * *Label* = fontanelle - * *Definition* = Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fontanelle] + * *Definition* = Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fontanelle ] ## Synonyms * fontanel - * fontanelles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001738[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fontanels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001738[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fonticuli cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fontanelle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fontanelles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001738, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fontanels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001738, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fonticuli cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fontanelle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0001465 * SCTID:272681004 * TAO:0001738 - * UMLS:C0224548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fontanelle] + * UMLS:C0224548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fontanelle ] * Wikipedia:Fontanelle * ZFA:0005536 * http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is a membranous gap between bones of the skull.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002321.md b/md/UBERON/21/UBERON_0002321.md index 52a9856c68..9eb4c8adec 100644 --- a/md/UBERON/21/UBERON_0002321.md +++ b/md/UBERON/21/UBERON_0002321.md @@ -26,7 +26,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [renal corpuscle](../../UBERON/29/UBERON_0001229.md) * [part_of](../../BFO/50/BFO_0000050.md) some [juxtaglomerular apparatus](../../UBERON/03/UBERON_0002303.md) * [part_of](../../BFO/50/BFO_0000050.md) some [mesangium](../../UBERON/19/UBERON_0002319.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Equivalencies @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002421.md b/md/UBERON/21/UBERON_0002421.md index 6ecb3c4142..f28bff41a1 100644 --- a/md/UBERON/21/UBERON_0002421.md +++ b/md/UBERON/21/UBERON_0002421.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002421 * *Label* = hippocampal formation - * *Definition* = Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]. BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says "hippocampus" it means "hippocampal formation". In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH. ## Synonyms * hippocampus (crosby) - * hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000601[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021766] - * archipallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000189] - * formatio hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:177[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * major hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000601] - * primal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000189] - * seahorse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:177] + * hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000601, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021766 ] + * archipallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000189 ] + * formatio hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:177, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * major hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000601 ] + * primal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000189 ] + * seahorse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:177 ] ## Cross-references @@ -29,9 +29,9 @@ * FMA:74038 * MA:0000189 * NIF_GrossAnatomy:birnlex_715 - * NeuroNames:177 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_715] + * NeuroNames:177 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_715 ] * SCTID:422867004 - * UMLS:C0175202 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_715] + * UMLS:C0175202 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_715 ] ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002521.md b/md/UBERON/21/UBERON_0002521.md index 0efc3209aa..efed261237 100644 --- a/md/UBERON/21/UBERON_0002521.md +++ b/md/UBERON/21/UBERON_0002521.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002521 * *Label* = elastic tissue - * *Definition* = Connective tissue composed of elastic fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Connective tissue composed of elastic fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002621.md b/md/UBERON/21/UBERON_0002621.md index 8caeb6db0d..e9a3e1e389 100644 --- a/md/UBERON/21/UBERON_0002621.md +++ b/md/UBERON/21/UBERON_0002621.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002621 * *Label* = regional part of cochlear nuclear complex - * *Definition* = A regional part of brain that is part of a cochlear nuclear complex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a cochlear nuclear complex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cochlear nuclear complex segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83952] - * segment of cochlear nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1195] + * cochlear nuclear complex segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83952 ] + * segment of cochlear nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1195 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002721.md b/md/UBERON/21/UBERON_0002721.md index 7c49698372..c74fa1553c 100644 --- a/md/UBERON/21/UBERON_0002721.md +++ b/md/UBERON/21/UBERON_0002721.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002721 * *Label* = lateral sulcus - * *Definition* = A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_sulcus] + * *Definition* = A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_sulcus ] ## Synonyms - * Sylvian fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1487] - * Sylvian sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * fissura lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1487] - * fissura lateralis cerebri (sylvii) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1487] - * fissura lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1487] - * fissura transversa cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Sylvian fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1487 ] + * Sylvian sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * fissura lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1487 ] + * fissura lateralis cerebri (sylvii) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1487 ] + * fissura lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1487 ] + * fissura transversa cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fissure of Sylvius - * lateral cerebral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801] - * lateral cerebral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801] - * lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801] + * lateral cerebral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801 ] + * lateral cerebral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801 ] + * lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801 ] * lateral fissure of Sylvius - * sulcus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1487] - * sulcus lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transverse cerebral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77801] - * ls [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1487[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus cerebri lateralis (Sylvii) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:49[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1487 ] + * sulcus lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transverse cerebral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77801 ] + * ls [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1487, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus cerebri lateralis (Sylvii) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:49, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,10 +32,10 @@ * BM:Tel-Cx-LS * FMA:77801 * NIF_GrossAnatomy:birnlex_1487 - * NeuroNames:49 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1487] + * NeuroNames:49 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1487 ] * SCTID:369226003 - * UMLS:C0228187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1487] - * UMLS:C0228187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fissure_of_Sylvius] + * UMLS:C0228187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1487 ] + * UMLS:C0228187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fissure_of_Sylvius ] * Wikipedia:Lateral_sulcus * http://upload.wikimedia.org/wikipedia/commons/4/41/Lateral_sulcus2.png * ncithesaurus:Fissure_of_Sylvius @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0002921.md b/md/UBERON/21/UBERON_0002921.md index e1ae6a8bb0..e484546b23 100644 --- a/md/UBERON/21/UBERON_0002921.md +++ b/md/UBERON/21/UBERON_0002921.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002921 * *Label* = longitudinal fissure - * *Definition* = The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_longitudinal_fissure] + * *Definition* = The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_longitudinal_fissure ] ## Synonyms - * fissura interhemispherica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * fissura longitudinalis cerebrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * fissura longitudinalis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * fissura longitudinalis magna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * hemispheric sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * interhemispheric fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * longitudinal cerebral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * longitudinal fissure of hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * longitudinal fissure of the cerebrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4041] - * longitudinal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * medial longitudinal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * sagittal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83727] - * lf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4041[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * fissura interhemispherica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * fissura longitudinalis cerebrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * fissura longitudinalis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * fissura longitudinalis magna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * hemispheric sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * interhemispheric fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * longitudinal cerebral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * longitudinal fissure of hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * longitudinal fissure of the cerebrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4041 ] + * longitudinal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * medial longitudinal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * sagittal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83727 ] + * lf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4041, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -27,11 +27,11 @@ * BAMS:lfh * FMA:83727 * NIF_GrossAnatomy:birnlex_4041 - * NeuroNames:35 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4041] + * NeuroNames:35 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4041 ] * OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA * SCTID:369225004 - * UMLS:C0228186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4041] - * UMLS:C0228186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longitudinal_Fissure] + * UMLS:C0228186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4041 ] + * UMLS:C0228186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longitudinal_Fissure ] * Wikipedia:Medial_longitudinal_fissure * http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Hemispheres.png/200px-Hemispheres.png * ncithesaurus:Longitudinal_Fissure @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003021.md b/md/UBERON/21/UBERON_0003021.md index b675786c82..fad2f419fd 100644 --- a/md/UBERON/21/UBERON_0003021.md +++ b/md/UBERON/21/UBERON_0003021.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003021 * *Label* = central lobule - * *Definition* = The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_lobule] + * *Definition* = The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_lobule ] * *Comment* = AO notes: Note in FMA this is classified as a hemispheric lobule, which leads to inconsistencies. In ABA it is vermic, and FMA actually places it in the anterior vermis. ## Synonyms - * central lobule of cerebellum [II and III] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72519] - * central lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72519] - * lobulus centralis cerebelli [ii et iii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72519[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * central lobe of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CENT] - * lobulus centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_lobule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72519 ] + * central lobule of cerebellum [II and III] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72519 ] + * lobulus centralis cerebelli [ii et iii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72519, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * central lobe of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CENT ] + * lobulus centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_lobule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003121.md b/md/UBERON/21/UBERON_0003121.md index 01b6a2bed3..fc405504e8 100644 --- a/md/UBERON/21/UBERON_0003121.md +++ b/md/UBERON/21/UBERON_0003121.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003121 * *Label* = aortic arch 4 - * *Definition* = the vessels formed within the fourth pair of branchial arches in embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006354] + * *Definition* = the vessels formed within the fourth pair of branchial arches in embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006354 ] * *Comment* = Development notes: Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta // proximal right subclavian ## Synonyms - * 4th arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000087] - * AA4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005008] - * fourth aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000355] + * 4th arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000087 ] + * AA4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005008 ] + * fourth aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000355 ] * fourth branchial arch artery - * 4th aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17004] - * 4th branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17004] - * 4th pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17004] - * systemic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000355] + * 4th aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17004 ] + * 4th branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17004 ] + * 4th pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17004 ] + * systemic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000355 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP][Wikipedia:Aortic_arches#Arch_4]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004350 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003221.md b/md/UBERON/21/UBERON_0003221.md index 6c76054000..ee45d372dd 100644 --- a/md/UBERON/21/UBERON_0003221.md +++ b/md/UBERON/21/UBERON_0003221.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003221 * *Label* = phalanx - * *Definition* = Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000199[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Phalanx_bones] + * *Definition* = Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000199, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Phalanx_bones ] * *Comment* = Taxon notes: In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP] ## Synonyms - * digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * phalange - * phalanges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * phalanx bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Phalanx_bones] + * phalanges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * phalanx bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Phalanx_bones ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0000304 * OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA * SCTID:290029003 - * UMLS:C0222682 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Phalanx] + * UMLS:C0222682 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Phalanx ] * VSAO:0000199 * Wikipedia:Phalanx_bones * galen:Phalanx @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long bone](../../UBERON/95/UBERON_0002495.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit](../../UBERON/44/UBERON_0002544.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = phalangeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003321.md b/md/UBERON/21/UBERON_0003321.md index f5b5f46b49..018f53971e 100644 --- a/md/UBERON/21/UBERON_0003321.md +++ b/md/UBERON/21/UBERON_0003321.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003321 * *Label* = mesenchyme of knee - * *Definition* = Mesenchyme that is part of a knee [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a knee [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * knee mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * knee mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003421.md b/md/UBERON/21/UBERON_0003421.md index 8ccb9825f4..93fbb914ce 100644 --- a/md/UBERON/21/UBERON_0003421.md +++ b/md/UBERON/21/UBERON_0003421.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003421 * *Label* = mesenchyme of vomeronasal organ - * *Definition* = Mesenchyme that is part of a vomeronasal organ [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a vomeronasal organ [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Jacobson's organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of Jacobson's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vomeronasal mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004103] - * vomeronasal organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Jacobson's organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of Jacobson's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vomeronasal mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004103 ] + * vomeronasal organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vomeronasal organ](../../UBERON/55/UBERON_0002255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003521.md b/md/UBERON/21/UBERON_0003521.md index 65bddd4b05..fa245c42e1 100644 --- a/md/UBERON/21/UBERON_0003521.md +++ b/md/UBERON/21/UBERON_0003521.md @@ -3,46 +3,46 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003521 * *Label* = pes blood vessel - * *Definition* = A blood vessel that is part of a foot [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a foot [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * autopod of hind limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000642] - * hind limb autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autopod of hind limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000642 ] + * hind limb autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -58,15 +58,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003721.md b/md/UBERON/21/UBERON_0003721.md index 4e8f0b67b6..122744710a 100644 --- a/md/UBERON/21/UBERON_0003721.md +++ b/md/UBERON/21/UBERON_0003721.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003821.md b/md/UBERON/21/UBERON_0003821.md index 2f80f6e54f..673cda1dc0 100644 --- a/md/UBERON/21/UBERON_0003821.md +++ b/md/UBERON/21/UBERON_0003821.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003821 * *Label* = metapodium bone - * *Definition* = A bone of the metapodial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone of the metapodial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * metacarpal or metatarsal bone * metacarpal/metatarsal - * metacarpal/metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000301] - * metapodi bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * metapodial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * metapodium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/metapodial[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * metacarpal/metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000301 ] + * metapodi bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * metapodial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * metapodium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/metapodial, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metapodium region](../../UBERON/77/UBERON_0009877.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0003921.md b/md/UBERON/21/UBERON_0003921.md index 11aeebd641..83eb5c64c2 100644 --- a/md/UBERON/21/UBERON_0003921.md +++ b/md/UBERON/21/UBERON_0003921.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003921 * *Label* = pancreas primordium - * *Definition* = embryonic structure that develops into pancreatic bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Pancreas#Embryological_development] + * *Definition* = embryonic structure that develops into pancreatic bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Pancreas#Embryological_development ] * *Comment* = AO notes: in EHDAA2 this has dorsal and ventral primordia as parts. the buds are part of the primordium, with the ducts developing from the buds; only parenchyma and ducts have contribution from buds. Terminology notes: revisit after standardizing terms 'primordium', 'anlagen', 'bud' ## Synonyms * pancreatic primordium * pancreatic anlage - * pancreatic endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0002579] - * primordial pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79792] + * pancreatic endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0002579 ] + * primordial pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79792 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004021.md b/md/UBERON/21/UBERON_0004021.md index b1f1e2845d..641cb6c1f5 100644 --- a/md/UBERON/21/UBERON_0004021.md +++ b/md/UBERON/21/UBERON_0004021.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004021 * *Label* = spongiotrophoblast layer - * *Definition* = the structure of the outer structural layer of the rodent placenta[MP]. Forms a compact layer of non-syncytial cells between the labyrinth and the outer giant cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004255[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19829370] + * *Definition* = the structure of the outer structural layer of the rodent placenta[MP]. Forms a compact layer of non-syncytial cells between the labyrinth and the outer giant cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004255, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19829370 ] * *Comment* = Taxon notes: restriction to Rodentia may be too strong - we apply it for now as we are inheriting the MP definition. Development notes: In the absence of direct lineage analysis, it has been assumed, from his- tological studies and from the continuity of marker gene expression, that the spongiotrophoblast largely derives from the cells of the ectoplacental cone[PMID:19829370] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004121.md b/md/UBERON/21/UBERON_0004121.md index 1d87c10cf1..108d60d284 100644 --- a/md/UBERON/21/UBERON_0004121.md +++ b/md/UBERON/21/UBERON_0004121.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004121 * *Label* = ectoderm-derived structure - * *Definition* = An anatomical structure that develops (entirely or partially) from the ectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops (entirely or partially) from the ectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004221.md b/md/UBERON/21/UBERON_0004221.md index 0503e03883..36aca73319 100644 --- a/md/UBERON/21/UBERON_0004221.md +++ b/md/UBERON/21/UBERON_0004221.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004221 * *Label* = intestine smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa ## Synonyms - * bowel involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000643] + * bowel involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000643 ] ## Cross-references * BTO:0000643 * MA:0001539 - * UMLS:C1708547 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestinal_Smooth_Muscle_Tissue] + * UMLS:C1708547 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestinal_Smooth_Muscle_Tissue ] * ncithesaurus:Intestinal_Smooth_Muscle_Tissue ## Subsets @@ -40,19 +40,20 @@ * [gastrointestinal system smooth muscle](../../UBERON/26/UBERON_0004226.md) * [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) * [part_of](../../BFO/50/BFO_0000050.md) some [wall of intestine](../../UBERON/62/UBERON_0001262.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [muscle layer of intestine](../../UBERON/67/UBERON_0012367.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004321.md b/md/UBERON/21/UBERON_0004321.md index 4e21827142..e167c18dcb 100644 --- a/md/UBERON/21/UBERON_0004321.md +++ b/md/UBERON/21/UBERON_0004321.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004321 * *Label* = middle phalanx of manual digit 3 - * *Definition* = A middle phalanx that is part of a hand digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a hand digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd digit of hand intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd digit of hand middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb digit III P2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * hand digit 3 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 3rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 3rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 3rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 3rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23934] - * middle phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third middle phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23934] - * forelimb short pastern bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * 3rd digit of hand intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd digit of hand middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb digit III P2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * hand digit 3 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 3rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 3rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 3rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 3rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23934 ] + * middle phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third middle phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23934 ] + * forelimb short pastern bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004421.md b/md/UBERON/21/UBERON_0004421.md index fc07299eaa..8703523b12 100644 --- a/md/UBERON/21/UBERON_0004421.md +++ b/md/UBERON/21/UBERON_0004421.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004421 * *Label* = proximal epiphysis of phalanx of manual digit 5 - * *Definition* = A proximal epiphysis that is part of a manual digit 5 phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a manual digit 5 phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534] - * basal epiphysis of phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534] - * base of phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534] - * base of phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534] - * base of phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534] + * basal epiphysis of phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534 ] + * basal epiphysis of phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534 ] + * base of phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534 ] + * base of phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534 ] + * base of phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534 ] * proximal epiphysis of phalanx of manual digit 5 - * proximal epiphysis of phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37534[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * proximal epiphysis of phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37534, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5 phalanx](../../UBERON/39/UBERON_0003639.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004521.md b/md/UBERON/21/UBERON_0004521.md index a452b9415f..acae96d5f5 100644 --- a/md/UBERON/21/UBERON_0004521.md +++ b/md/UBERON/21/UBERON_0004521.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004521 * *Label* = vasculature of muscle organ - * *Definition* = A vasculature that is part of a muscle organ [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a muscle organ [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscular organ vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:87123] + * muscular organ vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:87123 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [muscle organ](../../UBERON/30/UBERON_0001630.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004621.md b/md/UBERON/21/UBERON_0004621.md index bfd3dc048b..73619695dc 100644 --- a/md/UBERON/21/UBERON_0004621.md +++ b/md/UBERON/21/UBERON_0004621.md @@ -7,8 +7,8 @@ ## Synonyms - * L5 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13076] - * fifth lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13076] + * L5 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13076 ] + * fifth lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13076 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:13076 * MA:0001432 * SCTID:181845008 - * UMLS:C0223552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:L5_Vertebra] + * UMLS:C0223552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:L5_Vertebra ] * ncithesaurus:L5_Vertebra ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004721.md b/md/UBERON/21/UBERON_0004721.md index c3c5045677..5e4af4a5ef 100644 --- a/md/UBERON/21/UBERON_0004721.md +++ b/md/UBERON/21/UBERON_0004721.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004721 * *Label* = crista ampullaris - * *Definition* = The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crista_ampullaris] + * *Definition* = The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crista_ampullaris ] ## Synonyms - * ampullary crest of semicircular duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77714] - * ampullary crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002771] - * cristae ampullares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crista_ampullaris] + * ampullary crest of semicircular duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77714 ] + * ampullary crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002771 ] + * cristae ampullares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crista_ampullaris ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:77714 * MA:0002771 * SCTID:368953000 - * UMLS:C0229465 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ampullary_Crest] + * UMLS:C0229465 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ampullary_Crest ] * Wikipedia:Crista_ampullaris * http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png * ncithesaurus:Ampullary_Crest @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004821.md b/md/UBERON/21/UBERON_0004821.md index 3175729f9c..6f5f47735f 100644 --- a/md/UBERON/21/UBERON_0004821.md +++ b/md/UBERON/21/UBERON_0004821.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004821 * *Label* = pulmonary alveolus epithelium - * *Definition* = the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010898] + * *Definition* = the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010898 ] ## Synonyms - * alveolus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * alveolus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001771] - * epithelial tissue of alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of pulmonary alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63915] - * pulmonary alveolar epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63915] - * pulmonary alveolus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010898] + * alveolus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * alveolus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001771 ] + * epithelial tissue of alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of pulmonary alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63915 ] + * pulmonary alveolar epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63915 ] + * pulmonary alveolus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010898 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [alveolus of lung](../../UBERON/99/UBERON_0002299.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0004921.md b/md/UBERON/21/UBERON_0004921.md index f33b2d5d5f..22524253ec 100644 --- a/md/UBERON/21/UBERON_0004921.md +++ b/md/UBERON/21/UBERON_0004921.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004921 * *Label* = subdivision of digestive tract - * *Definition* = A proximal-distal subdivision of the digestive tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A proximal-distal subdivision of the digestive tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. ## Synonyms - * alimentary system subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71131] - * subdivision of alimentary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71131] + * alimentary system subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71131 ] + * subdivision of alimentary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71131 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of tube](../../UBERON/22/UBERON_0013522.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005021.md b/md/UBERON/21/UBERON_0005021.md index 12e55df50c..486eaebf54 100644 --- a/md/UBERON/21/UBERON_0005021.md +++ b/md/UBERON/21/UBERON_0005021.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005021 * *Label* = mucosa of sphenoidal sinus - * *Definition* = A mucosa that is part of a sphenoidal sinus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a sphenoidal sinus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor note: decide whether cavities can be part of mucosae ## Synonyms - * mucosa of organ of sphenoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of sphenoidal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of sphenoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of sphenoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of sphenoidal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of sphenoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of sphenoidal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoid sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoid sinus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoid sinus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoid sinus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoidal sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoidal sinus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoidal sinus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sphenoidal sinus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of sphenoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of sphenoidal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of sphenoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of sphenoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of sphenoidal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of sphenoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of sphenoidal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoid sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoid sinus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoid sinus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoid sinus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoidal sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoidal sinus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoidal sinus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sphenoidal sinus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [sphenoidal sinus](../../UBERON/24/UBERON_0001724.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005121.md b/md/UBERON/21/UBERON_0005121.md index fcac237dec..88da7628c8 100644 --- a/md/UBERON/21/UBERON_0005121.md +++ b/md/UBERON/21/UBERON_0005121.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005121 * *Label* = metanephric long descending thin limb bend - * *Definition* = The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072226] + * *Definition* = The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072226 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long descending thin limb bend](../../UBERON/06/UBERON_0004206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005221.md b/md/UBERON/21/UBERON_0005221.md index e3fa7f4376..00ca4768f2 100644 --- a/md/UBERON/21/UBERON_0005221.md +++ b/md/UBERON/21/UBERON_0005221.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005221 * *Label* = liver right lobe parenchyma - * *Definition* = A parenchyma that is part of a right lobe of liver [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a right lobe of liver [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * parenchyma of right lobe of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71657] + * parenchyma of right lobe of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71657 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lobe of liver](../../UBERON/14/UBERON_0001114.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005321.md b/md/UBERON/21/UBERON_0005321.md index 4638e17969..b8afa0e2ef 100644 --- a/md/UBERON/21/UBERON_0005321.md +++ b/md/UBERON/21/UBERON_0005321.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005321 * *Label* = mesonephric smooth muscle tissue - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061214] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061214 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005421.md b/md/UBERON/21/UBERON_0005421.md index 8b4d3975db..59fb6dadb1 100644 --- a/md/UBERON/21/UBERON_0005421.md +++ b/md/UBERON/21/UBERON_0005421.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005421 * *Label* = pectoral appendage apical ectodermal ridge - * *Definition* = An apical ectodermal ridge that is part of a pectoral appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An apical ectodermal ridge that is part of a pectoral appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * AER forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001064] - * apical ectodermal ridge forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001064] - * apical ectodermal ridge pectoral fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000085] - * upper limb bud apical ectodermal ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000138] - * wing AER [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Giesha:syn[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wing apical ectodermal ridge [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * aer pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000085] - * apical ectodermal ridge pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000085] - * apical fold pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000085] + * AER forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001064 ] + * apical ectodermal ridge forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001064 ] + * apical ectodermal ridge pectoral fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000085 ] + * upper limb bud apical ectodermal ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000138 ] + * wing AER [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Giesha:syn, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wing apical ectodermal ridge [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * aer pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000085 ] + * apical ectodermal ridge pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000085 ] + * apical fold pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000085 ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apical ectodermal ridge](../../UBERON/56/UBERON_0004356.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage bud](../../UBERON/19/UBERON_0005419.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Apical ectodermal ridge that is part of the pectoral fin bud.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Pectoral and pelvic fins are homologous to the tetrapod fore and hindlimb, respectively. (...) The zebrafish AER [apical ectodermal ridge] is an apical ectodermal thickening at the distal tip of the fin bud and consists of wedge-shaped cells of the basal stratum. The AER is observed only transiently, and from 36 hpf onwards the cells of this region form the apical fold (AF), which consists of a dorsal and a ventral layer of cylindrically-shaped ectodermal cells extending from the anterior to the posterior fin margin. Despite the change in shape, the AF still carries out the same functions as the AER. Indeed, although the AER receives its name from its characteristic shape, being composed of a pseudostratified ectoderm in the chicken and a polystratified ectoderm in the mouse, this independence of AER morphology from its function is also observed in tetrapods. The AF also expresses similar molecular markers to the tetrapod AER, suggesting that it fulfills similar functions in the fin as the AER does in tetrapod limbs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005621.md b/md/UBERON/21/UBERON_0005621.md index a6660d0c07..1f12eb20f5 100644 --- a/md/UBERON/21/UBERON_0005621.md +++ b/md/UBERON/21/UBERON_0005621.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005621 * *Label* = rhomboid - * *Definition* = A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhomboid_muscles] + * *Definition* = A rhombus-shaped muscle associated with the scapula and chiefly responsible for its retraction. There are two rhomboid muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhomboid_muscles ] * *Comment* = TODO - add child terms ## Synonyms * rhomboid muscle * muscle of rhomboideus complex - * musculus rhomboideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhomboid_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rhomboideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001391] + * musculus rhomboideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhomboid_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rhomboideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001391 ] * rhomboideus muscle ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005721.md b/md/UBERON/21/UBERON_0005721.md index 70ea2a7efa..be0a69bcad 100644 --- a/md/UBERON/21/UBERON_0005721.md +++ b/md/UBERON/21/UBERON_0005721.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005721 * *Label* = pronephric mesoderm - * *Definition* = A mesoderm that has_potential_to_develop_into a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesoderm that has_potential_to_develop_into a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney ## Synonyms - * pronephric anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000264] - * pronephric bulge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000264] - * pronephric mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000264] - * pronephric primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000264] + * pronephric anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000264 ] + * pronephric bulge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000264 ] + * pronephric mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000264 ] + * pronephric primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000264 ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [mesoderm](../../UBERON/26/UBERON_0000926.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005821.md b/md/UBERON/21/UBERON_0005821.md index 8094f3258b..b938ad99a7 100644 --- a/md/UBERON/21/UBERON_0005821.md +++ b/md/UBERON/21/UBERON_0005821.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005821 * *Label* = gracile fasciculus - * *Definition* = a group of axons that are from neurons involved in proprioception from the lower trunk and lower limb[GO]. The fasciculus gracilis (tract of Goll) is a bundle of axon fibres in the dorsomedial spinal cord that carries information about fine touch, vibrations, and conscious proprioception from the lower part of the body to the brain stem. It is part of the posterior column of the spinal cord, which also contains the fasciculus cuneatus, which carries the same information from the upper part of the body. This tract and its continuation in the brain stem is often referred to as the posterior column-medial lemniscus pathway. The fasciculus gracilis is wedge-shaped on transverse section and lies next the posterior median septum, its base being at the surface of the medulla spinalis, and its apex directed toward the posterior gray commissure. It increases in size from below upward, and consists of long thin fibers that are derived from the posterior nerve roots, and ascend as far as the medulla oblongata, where they end in the nucleus gracilis. The tract of Goll was named after Swiss neuroanatomist Friedrich Goll[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_fasciculus] + * *Definition* = a group of axons that are from neurons involved in proprioception from the lower trunk and lower limb[GO]. The fasciculus gracilis (tract of Goll) is a bundle of axon fibres in the dorsomedial spinal cord that carries information about fine touch, vibrations, and conscious proprioception from the lower part of the body to the brain stem. It is part of the posterior column of the spinal cord, which also contains the fasciculus cuneatus, which carries the same information from the upper part of the body. This tract and its continuation in the brain stem is often referred to as the posterior column-medial lemniscus pathway. The fasciculus gracilis is wedge-shaped on transverse section and lies next the posterior median septum, its base being at the surface of the medulla spinalis, and its apex directed toward the posterior gray commissure. It increases in size from below upward, and consists of long thin fibers that are derived from the posterior nerve roots, and ascend as far as the medulla oblongata, where they end in the nucleus gracilis. The tract of Goll was named after Swiss neuroanatomist Friedrich Goll[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_fasciculus ] * *Comment* = distinction between axon tract and fasicule is unclear, we create is_a parentage to both ## Synonyms - * fasciculus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258416] - * gracile fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258416] - * gracilis tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021958] - * tract of Goll [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021958] - * accessory olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] - * f. gracilis medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gracile column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_fasciculus] - * gracile tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_fasciculus] - * main olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] + * fasciculus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258416 ] + * gracile fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258416 ] + * gracilis tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021958 ] + * tract of Goll [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021958 ] + * accessory olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] + * f. gracilis medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gracile column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_fasciculus ] + * gracile tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_fasciculus ] + * main olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] ## Cross-references @@ -26,7 +26,7 @@ * FMA:258416 * NeuroNames:2440 * SCTID:369079001 - * UMLS:C0228522 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tract_of_Goll] + * UMLS:C0228522 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tract_of_Goll ] * Wikipedia:Gracile_fasciculus * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg * ncithesaurus:Tract_of_Goll @@ -50,8 +50,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004168 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0005921.md b/md/UBERON/21/UBERON_0005921.md index 7f8c8ecac4..30d1c740a6 100644 --- a/md/UBERON/21/UBERON_0005921.md +++ b/md/UBERON/21/UBERON_0005921.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005921 * *Label* = middle nasal concha - * *Definition* = The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_nasal_concha] + * *Definition* = The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_nasal_concha ] ## Synonyms - * middle nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57459] - * middle turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57459] - * middle concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_nasal_concha] + * middle nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57459 ] + * middle turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57459 ] + * middle concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_nasal_concha ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0006121.md b/md/UBERON/21/UBERON_0006121.md index d04ffd0d0c..58c827f512 100644 --- a/md/UBERON/21/UBERON_0006121.md +++ b/md/UBERON/21/UBERON_0006121.md @@ -6,19 +6,19 @@ ## Synonyms - * Biventer 1 (HVIII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081211] - * Biventral Lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081211] - * Lobulus Biventer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081211] - * Paraflocculus Dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081211] - * biventer lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * biventral lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * biventral lobule [h viii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * cuneiform lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * dorsal parafloccularis [h viii b] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * dorsal paraflocculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526] - * hemispheric lobule viii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081211] - * lobulus biventer [h viii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus parafloccularis dorsalis [h viii b] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72526[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Biventer 1 (HVIII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081211 ] + * Biventral Lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081211 ] + * Lobulus Biventer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081211 ] + * Paraflocculus Dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081211 ] + * biventer lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * biventral lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * biventral lobule [h viii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * cuneiform lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * dorsal parafloccularis [h viii b] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * dorsal paraflocculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526 ] + * hemispheric lobule viii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081211 ] + * lobulus biventer [h viii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus parafloccularis dorsalis [h viii b] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72526, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0006321.md b/md/UBERON/21/UBERON_0006321.md index 180623d02d..3cedd6e50f 100644 --- a/md/UBERON/21/UBERON_0006321.md +++ b/md/UBERON/21/UBERON_0006321.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006321 * *Label* = superior oblique extraocular muscle - * *Definition* = The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_oblique_muscle] + * *Definition* = The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_oblique_muscle ] ## Synonyms - * dorsal oblique extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001131] - * musculus obliquus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010119] - * obliquus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49039] - * superior oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49039] + * dorsal oblique extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001131 ] + * musculus obliquus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010119 ] + * obliquus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49039 ] + * superior oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49039 ] * superior oblique muscle - * M. obliquus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_oblique_muscle] - * dorsal oblique extraocular muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001131] - * musculus obliquus superior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_oblique_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * obliquus oculi superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_oblique_muscle] + * M. obliquus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_oblique_muscle ] + * dorsal oblique extraocular muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001131 ] + * musculus obliquus superior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_oblique_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * obliquus oculi superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_oblique_muscle ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001277 * SCTID:181155005 * TAO:0000738 - * UMLS:C0582816 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Oblique_Muscle] + * UMLS:C0582816 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Oblique_Muscle ] * VHOG:0001131 * Wikipedia:Superior_oblique_muscle * ZFA:0000738 @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cranial nerve IV innervated; dorsal in the obliquus group.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0006721.md b/md/UBERON/21/UBERON_0006721.md index ade5ab03be..a30b875011 100644 --- a/md/UBERON/21/UBERON_0006721.md +++ b/md/UBERON/21/UBERON_0006721.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006721 * *Label* = alisphenoid bone - * *Definition* = The greater wing of the sphenoid bone, or alisphenoid, is a bony process of the sphenoid bone; there is one on each side, extending from the side of the body of the sphenoid and curving upward, laterally, and backwards[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_wing_of_sphenoid_bone] + * *Definition* = The greater wing of the sphenoid bone, or alisphenoid, is a bony process of the sphenoid bone; there is one on each side, extending from the side of the body of the sphenoid and curving upward, laterally, and backwards[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_wing_of_sphenoid_bone ] * *Comment* = Taxon notes: The alisphenoid in mammals is part cartilage bone, part membrane bone[PMC1231738] In many mammals, e.g. the dog, the greater wing of the sphenoid bone stays through life a separate bone called the alisphenoid[WP]. Development notes: The mammalian alisphenoid forms the greater wing of the sphenoid bone, which contributes a small part of the skull vault just caudal to the orbit, and also underlies the basal part of the frontal and parietal bones in the fetus (Iseki et al. 1997)[PMID:11523816]. ## Synonyms - * ala major (os sphenoidale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52868] - * alisphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002772[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * greater wing of sphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52868] - * greater wing of sphenoidal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52868] - * ala major ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_wing_of_sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * epipterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * epipterygoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * greater wing of sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002772] + * ala major (os sphenoidale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52868 ] + * alisphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002772, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * greater wing of sphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52868 ] + * greater wing of sphenoidal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52868 ] + * ala major ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_wing_of_sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * epipterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * epipterygoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * greater wing of sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002772 ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alisphenoid endochondral element](../../UBERON/58/UBERON_0015058.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0006821.md b/md/UBERON/21/UBERON_0006821.md index ec9a103099..d5f1fd411e 100644 --- a/md/UBERON/21/UBERON_0006821.md +++ b/md/UBERON/21/UBERON_0006821.md @@ -11,7 +11,7 @@ * AAO:0000119 * FMA:74996 - * UMLS:C1184459 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cutaneous_Muscle] + * UMLS:C1184459 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cutaneous_Muscle ] * ncithesaurus:Cutaneous_Muscle ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0006921.md b/md/UBERON/21/UBERON_0006921.md index 898deec7db..ae74d8fbd9 100644 --- a/md/UBERON/21/UBERON_0006921.md +++ b/md/UBERON/21/UBERON_0006921.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006921 * *Label* = stomach squamous epithelium - * *Definition* = A squamous epithelium that is part of a stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A squamous epithelium that is part of a stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) and [squamous epithelium](../../UBERON/14/UBERON_0006914.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007021.md b/md/UBERON/21/UBERON_0007021.md index 86dcfaf79b..ce7527ec34 100644 --- a/md/UBERON/21/UBERON_0007021.md +++ b/md/UBERON/21/UBERON_0007021.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007021 * *Label* = juvenile organism - * *Definition* = A multi-cellular organism that is at the juvenile stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-cellular organism that is at the juvenile stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * juveniles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002047[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * juveniles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002047, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * juvenile ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [existence_ends_with](../../core#existence/th/core#existence_ends_with.md) some [juvenile stage](../../UBERON/12/UBERON_0000112.md) and [existence_starts_with](../../core#existence/th/core#existence_starts_with.md) some [juvenile stage](../../UBERON/12/UBERON_0000112.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Whole organism that is not fully grown or sexually mature.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007121.md b/md/UBERON/21/UBERON_0007121.md index 877c4cbb44..fa87df8596 100644 --- a/md/UBERON/21/UBERON_0007121.md +++ b/md/UBERON/21/UBERON_0007121.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007121 * *Label* = dermatome segment of skin - * *Definition* = A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermatome_(anatomy)] + * *Definition* = A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermatome_(anatomy) ] ## Synonyms - * dermatome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermatome_(anatomy)] - * dermatomic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermatome_(anatomy)] + * dermatome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermatome_(anatomy) ] + * dermatomic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermatome_(anatomy) ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007221.md b/md/UBERON/21/UBERON_0007221.md index cee0f9f579..ecd0d4b5ec 100644 --- a/md/UBERON/21/UBERON_0007221.md +++ b/md/UBERON/21/UBERON_0007221.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007221 * *Label* = neonate stage - * *Definition* = Of or pertaining to the period of time immediately following birth, or to the newborn. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infant[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/neonatal] + * *Definition* = Of or pertaining to the period of time immediately following birth, or to the newborn. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infant, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/neonatal ] * *Comment* = Editor note: consider splitting infant/newborn ## Synonyms - * neonatal stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fledgling stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hatchling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hatchling stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * infant stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * nestling stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * newborn stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * neonatal stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fledgling stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hatchling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hatchling stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * infant stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * nestling stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * newborn stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007321.md b/md/UBERON/21/UBERON_0007321.md index 53833fd114..ce40284b59 100644 --- a/md/UBERON/21/UBERON_0007321.md +++ b/md/UBERON/21/UBERON_0007321.md @@ -7,7 +7,7 @@ ## Synonyms - * lateral accessory saphenous vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44321] + * lateral accessory saphenous vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44321 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007521.md b/md/UBERON/21/UBERON_0007521.md index 77ad90046e..1a482e1d30 100644 --- a/md/UBERON/21/UBERON_0007521.md +++ b/md/UBERON/21/UBERON_0007521.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007521 * *Label* = smooth muscle sphincter - * *Definition* = A ring of smooth muscle cells whose contraction closes the opening of the ring. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A ring of smooth muscle cells whose contraction closes the opening of the ring. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [smooth muscle cell](../../CL/92/CL_0000192.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007721.md b/md/UBERON/21/UBERON_0007721.md index 73808c9ae2..820d441884 100644 --- a/md/UBERON/21/UBERON_0007721.md +++ b/md/UBERON/21/UBERON_0007721.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007721 * *Label* = interphalangeal joint of pes - * *Definition* = The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_foot] + * *Definition* = The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_foot ] ## Synonyms - * foot interphalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.900] - * interphalangeal joint of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35225] - * interphalangeal joint of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35225[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * toe joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.900] + * foot interphalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.900 ] + * interphalangeal joint of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35225 ] + * interphalangeal joint of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35225, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * toe joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.900 ] ## Cross-references * FMA:35225 * MESH:A02.835.583.378.900 * SCTID:182225005 - * UMLS:C0040356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interphalangeal_Joint_of_the_Foot] + * UMLS:C0040356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interphalangeal_Joint_of_the_Foot ] * Wikipedia:Interphalangeal_articulations_of_the_foot * ncithesaurus:Interphalangeal_Joint_of_the_Foot * ncithesaurus:Toe_Joint @@ -34,15 +34,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint](../../UBERON/58/UBERON_0006658.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0007821.md b/md/UBERON/21/UBERON_0007821.md index fccc700ec5..00f7ee8aba 100644 --- a/md/UBERON/21/UBERON_0007821.md +++ b/md/UBERON/21/UBERON_0007821.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007821 * *Label* = lateral nasal cartilage - * *Definition* = The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_nasal_cartilage] + * *Definition* = The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_nasal_cartilage ] ## Synonyms - * cartilago nasi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_nasal_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cartilago nasi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_nasal_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0008321.md b/md/UBERON/21/UBERON_0008321.md index 136b719a20..e4b47b2199 100644 --- a/md/UBERON/21/UBERON_0008321.md +++ b/md/UBERON/21/UBERON_0008321.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008321 * *Label* = deep artery of penis - * *Definition* = The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fasciC& of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_artery_of_the_penis] + * *Definition* = The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fasciC& of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_artery_of_the_penis ] ## Synonyms - * arteria profunda penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005086] - * deep penile artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19794] - * arteria cavernosa penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005086] - * arteria profunda penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_artery_of_the_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavernosal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005086] + * arteria profunda penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005086 ] + * deep penile artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19794 ] + * arteria cavernosa penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005086 ] + * arteria profunda penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_artery_of_the_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavernosal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005086 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0008521.md b/md/UBERON/21/UBERON_0008521.md index 7bf8d44f50..3fec40653d 100644 --- a/md/UBERON/21/UBERON_0008521.md +++ b/md/UBERON/21/UBERON_0008521.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008521 * *Label* = gluteus minimus - * *Definition* = The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_minimus_muscle] + * *Definition* = The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_minimus_muscle ] ## Synonyms * gluteus minimus muscle - * glutaeus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_minimus_muscle] - * gluteus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_minimus_muscle] - * glutus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_minimus_muscle] - * musculus gluteus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_minimus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glutaeus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_minimus_muscle ] + * gluteus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_minimus_muscle ] + * glutus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_minimus_muscle ] + * musculus gluteus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_minimus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0008821.md b/md/UBERON/21/UBERON_0008821.md index 8f93889f45..57de1b6b7c 100644 --- a/md/UBERON/21/UBERON_0008821.md +++ b/md/UBERON/21/UBERON_0008821.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008821 * *Label* = middle mediastinum - * *Definition* = The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_mediastinum] + * *Definition* = The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_mediastinum ] ## Synonyms - * middle mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9839] - * mediastinum medium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_mediastinum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9839 ] + * mediastinum medium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_mediastinum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:9839 * SCTID:362688008 - * UMLS:C0230149 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Mediastinum] + * UMLS:C0230149 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Mediastinum ] * Wikipedia:Middle_mediastinum * http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png * ncithesaurus:Middle_Mediastinum @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0008921.md b/md/UBERON/21/UBERON_0008921.md index f943196a5d..0f69a3bcab 100644 --- a/md/UBERON/21/UBERON_0008921.md +++ b/md/UBERON/21/UBERON_0008921.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008921 * *Label* = substratum of layer of retina - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:CL_meeting_20110725[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:CL_meeting_20110725, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0009121.md b/md/UBERON/21/UBERON_0009121.md index e64e3f04f7..d9d7577521 100644 --- a/md/UBERON/21/UBERON_0009121.md +++ b/md/UBERON/21/UBERON_0009121.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009121 * *Label* = vomeronasal nerve - * *Definition* = Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb[AAO]. originates in the olfactory epithelial cells of Jacobson's organ, and that passes through the submucous tissue of the nasal septum and the cribriform plate of the ethmoid bone to the olfactory bulb[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:DSM[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001351[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb[AAO]. originates in the olfactory epithelial cells of Jacobson's organ, and that passes through the submucous tissue of the nasal septum and the cribriform plate of the ethmoid bone to the olfactory bulb[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:DSM, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001351, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] * *Comment* = in the human this disappears before birth ## Synonyms - * accessory olfactory bulb vomeronasal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:vn] + * accessory olfactory bulb vomeronasal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:vn ] ## Cross-references @@ -26,8 +26,8 @@ * [cranial nerve](../../UBERON/85/UBERON_0001785.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [epithelium of vomeronasal organ](../../UBERON/67/UBERON_0003367.md) * [develops from](../../RO/02/RO_0002202.md) some [olfactory placode](../../UBERON/50/UBERON_0003050.md) ## Equivalencies @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0009521.md b/md/UBERON/21/UBERON_0009521.md index 727fd808e0..bb58d9148b 100644 --- a/md/UBERON/21/UBERON_0009521.md +++ b/md/UBERON/21/UBERON_0009521.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009521 * *Label* = anal membrane endodermal component - * *Definition* = An endoderm that is part of a anal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a anal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0009621.md b/md/UBERON/21/UBERON_0009621.md index c428d72d6b..51a5d32908 100644 --- a/md/UBERON/21/UBERON_0009621.md +++ b/md/UBERON/21/UBERON_0009621.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009621 * *Label* = tail somite - * *Definition* = A somite that is part of a tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A somite that is part of a tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tail](../../UBERON/15/UBERON_0002415.md) and [somite](../../UBERON/29/UBERON_0002329.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0009721.md b/md/UBERON/21/UBERON_0009721.md index bdada5b21f..86fdc3da50 100644 --- a/md/UBERON/21/UBERON_0009721.md +++ b/md/UBERON/21/UBERON_0009721.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0009921.md b/md/UBERON/21/UBERON_0009921.md index 32ff6c971e..4f3385f3b6 100644 --- a/md/UBERON/21/UBERON_0009921.md +++ b/md/UBERON/21/UBERON_0009921.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010021.md b/md/UBERON/21/UBERON_0010021.md index 94911724c4..d88ec38149 100644 --- a/md/UBERON/21/UBERON_0010021.md +++ b/md/UBERON/21/UBERON_0010021.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010221.md b/md/UBERON/21/UBERON_0010221.md index 641b880239..fde84870f1 100644 --- a/md/UBERON/21/UBERON_0010221.md +++ b/md/UBERON/21/UBERON_0010221.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010321.md b/md/UBERON/21/UBERON_0010321.md index 77f1c8c09b..0855c5b4da 100644 --- a/md/UBERON/21/UBERON_0010321.md +++ b/md/UBERON/21/UBERON_0010321.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010321 * *Label* = skeletal element of eye region - * *Definition* = A skeletal element that is part of a ocular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal element that is part of a ocular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ocular region](../../UBERON/88/UBERON_0004088.md) and [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010421.md b/md/UBERON/21/UBERON_0010421.md index e59d566c19..64beabcd04 100644 --- a/md/UBERON/21/UBERON_0010421.md +++ b/md/UBERON/21/UBERON_0010421.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010421 * *Label* = spleen B cell corona - * *Definition* = the area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17495967[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/6] + * *Definition* = the area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17495967, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/6 ] ## Synonyms - * follicle mantle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * spleen B cell corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * spleen B-cell corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * spleen lymphocytic corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * splenic B cell corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * B cell domain of the spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] + * follicle mantle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * spleen B cell corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * spleen B-cell corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * spleen lymphocytic corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * splenic B cell corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * B cell domain of the spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] * B lymphocyte domain of the spleen - * lymphocytic corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] - * splenic corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * spleen mantle zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002360] + * lymphocytic corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] + * splenic corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * spleen mantle zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002360 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) and [secondary follicle corona](../../UBERON/55/UBERON_0010755.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010521.md b/md/UBERON/21/UBERON_0010521.md index f346d68230..45dbadee35 100644 --- a/md/UBERON/21/UBERON_0010521.md +++ b/md/UBERON/21/UBERON_0010521.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010521 * *Label* = electroreceptor organ - * *Definition* = An organ that is capable of detecting electrical stimulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that is capable of detecting electrical stimulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [detection of electrical stimulus involved in electroception](../../GO/64/GO_0050964.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010721.md b/md/UBERON/21/UBERON_0010721.md index c92eea5902..0d36148fee 100644 --- a/md/UBERON/21/UBERON_0010721.md +++ b/md/UBERON/21/UBERON_0010721.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010721 * *Label* = distal tarsal bone - * *Definition* = There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneiform_%28anatomy%29] + * *Definition* = There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneiform_%28anatomy%29 ] ## Synonyms - * cuneiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24517] - * distal tarsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000914] + * cuneiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24517 ] + * distal tarsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000914 ] * distal tarsal bone * os cuneiform * os cuneiforme @@ -19,7 +19,7 @@ * AAO:0000914 * FMA:24517 * SCTID:182102002 - * UMLS:C1511560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cuneiform_Bone_of_the_Foot] + * UMLS:C1511560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cuneiform_Bone_of_the_Foot ] * Wikipedia:Cuneiform_%28anatomy%29 * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png * ncithesaurus:Cuneiform_Bone_of_the_Foot @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone endochondral element](../../UBERON/99/UBERON_0015099.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Series of elements that articulate with the metatarsals.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0010921.md b/md/UBERON/21/UBERON_0010921.md index 19538875b4..4a7689bdf2 100644 --- a/md/UBERON/21/UBERON_0010921.md +++ b/md/UBERON/21/UBERON_0010921.md @@ -11,7 +11,7 @@ * FMA:55135 * SCTID:279551000 - * UMLS:C0225534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyrohyoid_Ligament] + * UMLS:C0225534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyrohyoid_Ligament ] * ncithesaurus:Thyrohyoid_Ligament ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011121.md b/md/UBERON/21/UBERON_0011121.md index be81d4235d..5ca1745683 100644 --- a/md/UBERON/21/UBERON_0011121.md +++ b/md/UBERON/21/UBERON_0011121.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011121 * *Label* = cricothyroid joint - * *Definition* = The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_articulation] + * *Definition* = The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_articulation ] ## Synonyms - * cricothyroid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55101] - * crico-thyroid joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_articulation] + * cricothyroid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55101 ] + * crico-thyroid joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_articulation ] ## Cross-references * FMA:55101 * SCTID:361944002 - * UMLS:C0225540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricothyroid_Joint] + * UMLS:C0225540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricothyroid_Joint ] * Wikipedia:Cricothyroid_articulation * http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg * ncithesaurus:Cricothyroid_Joint @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [connects](../../ts/core#connects.md) some [thyroid cartilage](../../UBERON/38/UBERON_0001738.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011221.md b/md/UBERON/21/UBERON_0011221.md index 4e778f97a8..d1860108df 100644 --- a/md/UBERON/21/UBERON_0011221.md +++ b/md/UBERON/21/UBERON_0011221.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011221 * *Label* = ora serrata of retina - * *Definition* = The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ora_serrata] + * *Definition* = The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ora_serrata ] ## Synonyms - * ora serrata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58600] - * ora serrata retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ora ciliaris retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ora_serrata] - * ora ciliaris retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ora_serrata] + * ora serrata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58600 ] + * ora serrata retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ora ciliaris retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ora_serrata ] + * ora ciliaris retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ora_serrata ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011321.md b/md/UBERON/21/UBERON_0011321.md index 82004e39e9..3efe4d1c1d 100644 --- a/md/UBERON/21/UBERON_0011321.md +++ b/md/UBERON/21/UBERON_0011321.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011321 * *Label* = masseteric nerve - * *Definition* = The masseteric nerve passes laterally, above the Pterygoideus externus, in front of the temporomandibular articulation, and behind the tendon of the Temporalis; it crosses the mandibular notch with the masseteric artery, to the deep surface of the Masseter, in which it ramifies nearly as far as its anterior border. It gives a filament to the temporomandibular joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseteric_nerve] + * *Definition* = The masseteric nerve passes laterally, above the Pterygoideus externus, in front of the temporomandibular articulation, and behind the tendon of the Temporalis; it crosses the mandibular notch with the masseteric artery, to the deep surface of the Masseter, in which it ramifies nearly as far as its anterior border. It gives a filament to the temporomandibular joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseteric_nerve ] ## Synonyms - * nervus massetericus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseteric_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus massetericus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseteric_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011621.md b/md/UBERON/21/UBERON_0011621.md index 6e6ac4b578..6621a53165 100644 --- a/md/UBERON/21/UBERON_0011621.md +++ b/md/UBERON/21/UBERON_0011621.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011621 * *Label* = thyrohyoid cartilage - * *Definition* = This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2033] + * *Definition* = This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2033 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011821.md b/md/UBERON/21/UBERON_0011821.md index 82dd622cee..f1e9cca9a4 100644 --- a/md/UBERON/21/UBERON_0011821.md +++ b/md/UBERON/21/UBERON_0011821.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011821 * *Label* = irregular connective tissue - * *Definition* = Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20107] + * *Definition* = Connective tissue, which consists of a population of connective tissue cells, the intercellular matrix of which contains an irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, mucoid tissue, connective tissue of peritoneum, connective tissue of fibrous pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20107 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011821 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0011921.md b/md/UBERON/21/UBERON_0011921.md index 81350c284d..139db9c086 100644 --- a/md/UBERON/21/UBERON_0011921.md +++ b/md/UBERON/21/UBERON_0011921.md @@ -7,8 +7,8 @@ ## Synonyms - * blood island of umbilical vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_island] - * insula sanguinea vesiculae umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_island] + * blood island of umbilical vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_island ] + * insula sanguinea vesiculae umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_island ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011921 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0012121.md b/md/UBERON/21/UBERON_0012121.md index c57e536bba..a00cd07224 100644 --- a/md/UBERON/21/UBERON_0012121.md +++ b/md/UBERON/21/UBERON_0012121.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012121 * *Label* = respiratory velum - * *Definition* = a respiratory pump found in basal craniates [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:http://palaeos.com/vertebrates/glossary/glossaryUV.html] + * *Definition* = a respiratory pump found in basal craniates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:http://palaeos.com/vertebrates/glossary/glossaryUV.html ] * *Comment* = Muscular scroll-like flap that moves water through median nostril and over gills // trifid and posteriorly directed lamina arising from roof of pharynx, behind posterior end of naso-pharyngeal duct ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7762 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0012321.md b/md/UBERON/21/UBERON_0012321.md index 5138af73ab..c307403efd 100644 --- a/md/UBERON/21/UBERON_0012321.md +++ b/md/UBERON/21/UBERON_0012321.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012321 * *Label* = deep cervical artery - * *Definition* = The deep cervical artery (Profunda cervicalis) is an artery of the neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_artery] + * *Definition* = The deep cervical artery (Profunda cervicalis) is an artery of the neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_artery ] ## Synonyms - * profunda cervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_artery] + * profunda cervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_artery ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012321 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0012421.md b/md/UBERON/21/UBERON_0012421.md index 6688a1d060..02c2e788bc 100644 --- a/md/UBERON/21/UBERON_0012421.md +++ b/md/UBERON/21/UBERON_0012421.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012421 * *Label* = urodeum - * *Definition* = Cloacal compartment into which the urogenital system empties[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Cloacal compartment into which the urogenital system empties[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Taxon notes: This is where the urates collect. In the hen the oviduct opens into this compartment.[http://caiquesite.com/glossary.htm] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = urodeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012421 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0012621.md b/md/UBERON/21/UBERON_0012621.md index 3f6efc8172..96cdc8590f 100644 --- a/md/UBERON/21/UBERON_0012621.md +++ b/md/UBERON/21/UBERON_0012621.md @@ -6,7 +6,7 @@ ## Synonyms - * lantern muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001924] + * lantern muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001924 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Aristotle's lantern](../../UBERON/53/UBERON_0008253.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0013121.md b/md/UBERON/21/UBERON_0013121.md index e075e346f5..f955b6f0b0 100644 --- a/md/UBERON/21/UBERON_0013121.md +++ b/md/UBERON/21/UBERON_0013121.md @@ -6,11 +6,11 @@ ## Synonyms - * basal epiphysis of phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32888] - * base of phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32888] - * basis phalangis (pedis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32888] - * basis phalangis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * proximal epiphysis of phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32888] + * basal epiphysis of phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32888 ] + * base of phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32888 ] + * basis phalangis (pedis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32888 ] + * basis phalangis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * proximal epiphysis of phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32888 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [phalanx of pes](../../UBERON/49/UBERON_0001449.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013121 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0013221.md b/md/UBERON/21/UBERON_0013221.md index 07759f7cc5..559df5ff5d 100644 --- a/md/UBERON/21/UBERON_0013221.md +++ b/md/UBERON/21/UBERON_0013221.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013221 * *Label* = caudofemoralis - * *Definition* = The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudofemoralis] + * *Definition* = The caudofemoralis (from the latin cauda, tail and femur, thighbone) is a muscle found in the pelvic limb of mostly all animals possessing a tail, since it is a synapomorphy appeared on the Archosauria clade. It is thus found in felids (cats) and Mustela ('Weasels'), but also on crocodiles and birds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudofemoralis ] * *Comment* = Action: The Caudofemoralis acts to flex the tail laterally to its respective side when the pelvic limb is bearing weight. When the pelvic limb is lifted off the ground, contraction of the Caudofemoralis causes the limb to abduct and the shank to extend by extending the hip joint (acetabulofemoral or coxofemoral joint) ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013221 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0013621.md b/md/UBERON/21/UBERON_0013621.md index 38eb68c2e9..018255bfd3 100644 --- a/md/UBERON/21/UBERON_0013621.md +++ b/md/UBERON/21/UBERON_0013621.md @@ -6,8 +6,8 @@ ## Synonyms - * lower permanent molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55721] - * mandibular secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55721] + * lower permanent molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55721 ] + * mandibular secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55721 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) and [secondary molar tooth](../../UBERON/18/UBERON_0013618.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0013721.md b/md/UBERON/21/UBERON_0013721.md index f3d648029b..7a9e31d25e 100644 --- a/md/UBERON/21/UBERON_0013721.md +++ b/md/UBERON/21/UBERON_0013721.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013721 * *Label* = deep inguinal ring - * *Definition* = The entrance to the inguinal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring] + * *Definition* = The entrance to the inguinal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring ] ## Synonyms - * abdominal inguinal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring] - * annulus inguinalis profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal abdominal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring] - * internal inguinal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring] - * internal ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_inguinal_ring] + * abdominal inguinal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring ] + * annulus inguinalis profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal abdominal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring ] + * internal inguinal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring ] + * internal ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_inguinal_ring ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_deep_part_of](../../BSPO/01/BSPO_0001101.md) some [inguinal ligament](../../UBERON/04/UBERON_0006204.md) and [inguinal ring](../../UBERON/74/UBERON_0006674.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013721 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0014521.md b/md/UBERON/21/UBERON_0014521.md index de941a7d72..711ee6ff94 100644 --- a/md/UBERON/21/UBERON_0014521.md +++ b/md/UBERON/21/UBERON_0014521.md @@ -6,16 +6,16 @@ ## Synonyms - * anterodorsal nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1600] - * ADMG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1600[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterodorsal nucleus of the medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:852] - * nucleus corporis geniculati medialis, pars anterodorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1600] + * anterodorsal nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1600 ] + * ADMG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1600, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterodorsal nucleus of the medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:852 ] + * nucleus corporis geniculati medialis, pars anterodorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1600 ] ## Cross-references * BAMS:MGad * NIF_GrossAnatomy:birnlex_1600 - * NeuroNames:852 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1600] + * NeuroNames:852 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1600 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014521 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0014621.md b/md/UBERON/21/UBERON_0014621.md index b69ae0153c..c0fd463324 100644 --- a/md/UBERON/21/UBERON_0014621.md +++ b/md/UBERON/21/UBERON_0014621.md @@ -6,15 +6,15 @@ ## Synonyms - * cervical spinal cord ventral horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1680[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * cervical spinal cord anterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1680] + * cervical spinal cord ventral horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1680, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * cervical spinal cord anterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1680 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1680 * SCTID:174363005 - * UMLS:C0228615 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1680] - * UMLS:C1278740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1680] + * UMLS:C0228615 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1680 ] + * UMLS:C1278740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1680 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [ventral horn of spinal cord](../../UBERON/57/UBERON_0002257.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014621 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_0015021.md b/md/UBERON/21/UBERON_0015021.md index 575f52d08f..3e7c635cc1 100644 --- a/md/UBERON/21/UBERON_0015021.md +++ b/md/UBERON/21/UBERON_0015021.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015021 * *Label* = forelimb endochondral element - * *Definition* = A forelimb bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A forelimb bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * forelimb skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * forelimb skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) + * [forelimb bone pre-cartilage condensation](../../UBERON/84/UBERON_0010884.md)or[forelimb bone](../../UBERON/62/UBERON_0008962.md)or[forelimb cartilage element](../../UBERON/83/UBERON_0010883.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_1000021.md b/md/UBERON/21/UBERON_1000021.md index 85c7ad9ffb..4ce7d0922b 100644 --- a/md/UBERON/21/UBERON_1000021.md +++ b/md/UBERON/21/UBERON_1000021.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000021 * *Label* = skin of face - * *Definition* = A zone of skin that is part of the face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:EJS] + * *Definition* = A zone of skin that is part of the face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:EJS ] ## Synonyms - * face skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24758] + * face skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24758 ] * facial skin ## Cross-references * FMA:24758 * SCTID:361703006 - * UMLS:C0222084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Face] + * UMLS:C0222084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Face ] * ncithesaurus:Skin_of_the_Face ## Subsets @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = eriks * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-02-05T05:23:01Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000021 + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2000221.md b/md/UBERON/21/UBERON_2000221.md index 6f2c099314..9afca512bf 100644 --- a/md/UBERON/21/UBERON_2000221.md +++ b/md/UBERON/21/UBERON_2000221.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2000321.md b/md/UBERON/21/UBERON_2000321.md index c58a1fb121..1225346a2b 100644 --- a/md/UBERON/21/UBERON_2000321.md +++ b/md/UBERON/21/UBERON_2000321.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2000721.md b/md/UBERON/21/UBERON_2000721.md index c8ce0268f3..576eeb6dc9 100644 --- a/md/UBERON/21/UBERON_2000721.md +++ b/md/UBERON/21/UBERON_2000721.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000721[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000721, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_2000821.md b/md/UBERON/21/UBERON_2000821.md index 878d47ce74..10a78590f5 100644 --- a/md/UBERON/21/UBERON_2000821.md +++ b/md/UBERON/21/UBERON_2000821.md @@ -6,7 +6,7 @@ ## Synonyms - * primary neurons hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000821[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * primary neurons hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000821, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_2000921.md b/md/UBERON/21/UBERON_2000921.md index da35802439..4a77b1d7ee 100644 --- a/md/UBERON/21/UBERON_2000921.md +++ b/md/UBERON/21/UBERON_2000921.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000921[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000921, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_2001021.md b/md/UBERON/21/UBERON_2001021.md index ebf8c519f7..005d0ffd73 100644 --- a/md/UBERON/21/UBERON_2001021.md +++ b/md/UBERON/21/UBERON_2001021.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001021 * *Label* = myotome somite 6 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2001221.md b/md/UBERON/21/UBERON_2001221.md index cdc353e9de..1e9075a6ad 100644 --- a/md/UBERON/21/UBERON_2001221.md +++ b/md/UBERON/21/UBERON_2001221.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001221 * *Label* = anterior copula - * *Definition* = Copula that is ventral, median, and associated with pharyngeal arches 3-5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Copula that is ventral, median, and associated with pharyngeal arches 3-5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anterior basibranchial copula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001221] - * copula 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001221] - * copula 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001221] + * anterior basibranchial copula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001221 ] + * copula 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001221 ] + * copula 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001221 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2001421.md b/md/UBERON/21/UBERON_2001421.md index 875949a92b..5b660ed783 100644 --- a/md/UBERON/21/UBERON_2001421.md +++ b/md/UBERON/21/UBERON_2001421.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001421 * *Label* = obsolete anal fin lepidotrichium - * *Definition* = Lepidotrichium which is part of the anal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lepidotrichium which is part of the anal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anal fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * anal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001421] + * anal fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * anal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001421 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000176 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_2001521.md b/md/UBERON/21/UBERON_2001521.md index a460736d8f..01dcfa9491 100644 --- a/md/UBERON/21/UBERON_2001521.md +++ b/md/UBERON/21/UBERON_2001521.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001521 * *Label* = ceratobranchial 5 cartilage - * *Definition* = Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2001721.md b/md/UBERON/21/UBERON_2001721.md index 0ec5420f53..afc770a1dd 100644 --- a/md/UBERON/21/UBERON_2001721.md +++ b/md/UBERON/21/UBERON_2001721.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001721 * *Label* = caudal principal ray 9 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2001821.md b/md/UBERON/21/UBERON_2001821.md index 0d8a737ac7..325ea8b2ad 100644 --- a/md/UBERON/21/UBERON_2001821.md +++ b/md/UBERON/21/UBERON_2001821.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001821 * *Label* = notochord posterior region - * *Definition* = Portion of tissue that is part of the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Portion of tissue that is part of the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2001921.md b/md/UBERON/21/UBERON_2001921.md index c7220946c5..ad15e237c6 100644 --- a/md/UBERON/21/UBERON_2001921.md +++ b/md/UBERON/21/UBERON_2001921.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001921 * *Label* = adipose eyelid - * *Definition* = Surface structure that is a fleshy membrane covering part of the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a fleshy membrane covering part of the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2002021.md b/md/UBERON/21/UBERON_2002021.md index c4cf519b84..0281b96c3c 100644 --- a/md/UBERON/21/UBERON_2002021.md +++ b/md/UBERON/21/UBERON_2002021.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002021 * *Label* = ascending process of the parasphenoid - * *Definition* = Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ascending ramus of the parasphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002021] + * ascending ramus of the parasphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002021 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2002221.md b/md/UBERON/21/UBERON_2002221.md index d5763a65f1..f6de3097c0 100644 --- a/md/UBERON/21/UBERON_2002221.md +++ b/md/UBERON/21/UBERON_2002221.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2005021.md b/md/UBERON/21/UBERON_2005021.md index 0e9aa1f62b..7dc506a706 100644 --- a/md/UBERON/21/UBERON_2005021.md +++ b/md/UBERON/21/UBERON_2005021.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005021 * *Label* = cerebellar central artery - * *Definition* = Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * CCtA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005021] + * CCtA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005021 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2005121.md b/md/UBERON/21/UBERON_2005121.md index c20638bb3f..ce0ba87b4c 100644 --- a/md/UBERON/21/UBERON_2005121.md +++ b/md/UBERON/21/UBERON_2005121.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_2005221.md b/md/UBERON/21/UBERON_2005221.md index cdf0343b36..852ea9db2c 100644 --- a/md/UBERON/21/UBERON_2005221.md +++ b/md/UBERON/21/UBERON_2005221.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3000121.md b/md/UBERON/21/UBERON_3000121.md index 5de36aba44..09123ce928 100644 --- a/md/UBERON/21/UBERON_3000121.md +++ b/md/UBERON/21/UBERON_3000121.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000121 * *Label* = obsolete dense connective tissue - * *Definition* = Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011823 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_3000521.md b/md/UBERON/21/UBERON_3000521.md index c54fb8b54a..1931d004e2 100644 --- a/md/UBERON/21/UBERON_3000521.md +++ b/md/UBERON/21/UBERON_3000521.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000521 * *Label* = pterygoid - * *Definition* = Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pterygoidien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000521] + * pterygoidien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000521 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0010389 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_3000821.md b/md/UBERON/21/UBERON_3000821.md index 84a4a8d156..3f315557b3 100644 --- a/md/UBERON/21/UBERON_3000821.md +++ b/md/UBERON/21/UBERON_3000821.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000821 * *Label* = margo suprascapularis - * *Definition* = Superior margin of the scapula, which articulates with the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Superior margin of the scapula, which articulates with the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3000921.md b/md/UBERON/21/UBERON_3000921.md index 69b187b12a..722a21edbf 100644 --- a/md/UBERON/21/UBERON_3000921.md +++ b/md/UBERON/21/UBERON_3000921.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000921 * *Label* = element Y of hind mesopodium - * *Definition* = Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3010021.md b/md/UBERON/21/UBERON_3010021.md index 4c9e12292e..ca54f25376 100644 --- a/md/UBERON/21/UBERON_3010021.md +++ b/md/UBERON/21/UBERON_3010021.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3010321.md b/md/UBERON/21/UBERON_3010321.md index 39b4a4f1bc..24d79179d3 100644 --- a/md/UBERON/21/UBERON_3010321.md +++ b/md/UBERON/21/UBERON_3010321.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010321 * *Label* = obsolete podocyte - * *Definition* = Cell type that is a component of the glomus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Cell type that is a component of the glomus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000653 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_3010621.md b/md/UBERON/21/UBERON_3010621.md index 766287139d..957f49ee6c 100644 --- a/md/UBERON/21/UBERON_3010621.md +++ b/md/UBERON/21/UBERON_3010621.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010621 * *Label* = constrictor laryngis anterior - * *Definition* = Involved in the movement of the arytenoid cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Involved in the movement of the arytenoid cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms - * sphincter posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010621] + * sphincter posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010621 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3010721.md b/md/UBERON/21/UBERON_3010721.md index d7ec867b29..cefc84e843 100644 --- a/md/UBERON/21/UBERON_3010721.md +++ b/md/UBERON/21/UBERON_3010721.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3010821.md b/md/UBERON/21/UBERON_3010821.md index a7f99759ae..b8137c25dc 100644 --- a/md/UBERON/21/UBERON_3010821.md +++ b/md/UBERON/21/UBERON_3010821.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010821 * *Label* = hyoquadrate process - * *Definition* = A projection on the suboccular arch, ventral to the muscular process, that serves as the articulation point for the lateral process of the ceratohyal of the hyobranchial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:AMM] + * *Definition* = A projection on the suboccular arch, ventral to the muscular process, that serves as the articulation point for the lateral process of the ceratohyal of the hyobranchial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:AMM ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_3011121.md b/md/UBERON/21/UBERON_3011121.md index 2634b6c093..5322661936 100644 --- a/md/UBERON/21/UBERON_3011121.md +++ b/md/UBERON/21/UBERON_3011121.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2011-04-20T05:21:45Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_4000021.md b/md/UBERON/21/UBERON_4000021.md index 5c84d0b6c7..5eeeacc362 100644 --- a/md/UBERON/21/UBERON_4000021.md +++ b/md/UBERON/21/UBERON_4000021.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000021 * *Label* = obsolete proteinaceous extracellular matrix - * *Definition* = A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:[GOC:mtg_sensu, ISBN:0198547684][database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:[GOC:mtg_sensu, ISBN:0198547684], [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0005578 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/21/UBERON_4200021.md b/md/UBERON/21/UBERON_4200021.md index 6600121427..1f1489b167 100644 --- a/md/UBERON/21/UBERON_4200021.md +++ b/md/UBERON/21/UBERON_4200021.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = NI - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_4200121.md b/md/UBERON/21/UBERON_4200121.md index 0f91f6afb5..8623565cc9 100644 --- a/md/UBERON/21/UBERON_4200121.md +++ b/md/UBERON/21/UBERON_4200121.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/21/UBERON_4300021.md b/md/UBERON/21/UBERON_4300021.md index 36ea779b06..90714f18c7 100644 --- a/md/UBERON/21/UBERON_4300021.md +++ b/md/UBERON/21/UBERON_4300021.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300021 * *Label* = anterolateral plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderm fishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderm fishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms - * AL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * AL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0000022.md b/md/UBERON/22/UBERON_0000022.md index 4159fea488..83ededf9e1 100644 --- a/md/UBERON/22/UBERON_0000022.md +++ b/md/UBERON/22/UBERON_0000022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000022 * *Label* = feather - * *Definition* = one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins. The ?-keratins in feathers, beaks and claws and the claws, scales and shells of reptiles are composed of protein strands hydrogen-bonded into ?-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the ?-keratins of mammalian hair, horns and hoof. The exact signals that induce the growth of feathers on the skin are not known but it has been found that the transcription factor cDermo-1 induces the growth of feathers on skin and scales on the leg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Feather] + * *Definition* = one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins. The ?-keratins in feathers, beaks and claws and the claws, scales and shells of reptiles are composed of protein strands hydrogen-bonded into ?-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the ?-keratins of mammalian hair, horns and hoof. The exact signals that induce the growth of feathers on the skin are not known but it has been found that the transcription factor cDermo-1 induces the growth of feathers on skin and scales on the leg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Feather ] * *Comment* = Taxon notes: They are among the characteristics that distinguish the extant Aves from other living groups. Feathers have also been noticed in those Theropoda which have been termed feathered dinosaurs. Although feathers cover most parts of the body of birds, they arise only from certain well-defined tracts on the skin. They aid in flight, thermal insulation, waterproofing and coloration that helps in communication and protection. Structure notes: The ?-keratins in feathers, beaks and claws and the claws, scales and shells of reptiles are composed of protein strands hydrogen-bonded into ?-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the ?-keratins of mammalian hair, horns and hoof. ## Synonyms @@ -41,9 +41,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000022 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://xkcd.com/1104/ +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_0000122.md b/md/UBERON/22/UBERON_0000122.md index 3e5782e1bf..5ec884af1d 100644 --- a/md/UBERON/22/UBERON_0000122.md +++ b/md/UBERON/22/UBERON_0000122.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000122 * *Label* = neuron projection bundle - * *Definition* = A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0001001[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBC:DOS[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005099] + * *Definition* = A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0001001, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBC:DOS, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005099 ] ## Synonyms * funiculus - * nerve fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005099] + * nerve fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005099 ] * neural fiber bundle ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005163 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0000322.md b/md/UBERON/22/UBERON_0000322.md index bcbc91a12e..cc76ecd193 100644 --- a/md/UBERON/22/UBERON_0000322.md +++ b/md/UBERON/22/UBERON_0000322.md @@ -7,10 +7,10 @@ ## Synonyms - * Cerebral lobes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77800] - * Cerebral lobes set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77800] - * lobi cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77800[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of cerebral lobes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77800] + * Cerebral lobes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77800 ] + * Cerebral lobes set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77800 ] + * lobi cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77800, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of cerebral lobes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77800 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0000922.md b/md/UBERON/22/UBERON_0000922.md index e0e8920c4d..1f5731c33f 100644 --- a/md/UBERON/22/UBERON_0000922.md +++ b/md/UBERON/22/UBERON_0000922.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000922 * *Label* = embryo - * *Definition* = Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000379[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0039741[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0041814[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0009790[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Embryo] + * *Definition* = Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000379, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0039741, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0041814, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0009790, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Embryo ] * *Comment* = Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo ## Synonyms - * embryonic organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000056] - * developing organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000056] + * embryonic organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000056 ] + * developing organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000056 ] * developmental tissue ## Cross-references @@ -34,7 +34,7 @@ * OGEM:000001 * OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA * SCTID:57991002 - * UMLS:C0013935 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Embryo] + * UMLS:C0013935 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Embryo ] * VHOG:0001766 * Wikipedia:Embryo * XAO:0000113 @@ -57,7 +57,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [existence_ends_with](../../core#existence/th/core#existence_ends_with.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) and [existence_starts_with](../../core#existence/th/core#existence_starts_with.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -66,8 +66,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = embryonic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001022.md b/md/UBERON/22/UBERON_0001022.md index 79fb95c8ec..98e9851a5c 100644 --- a/md/UBERON/22/UBERON_0001022.md +++ b/md/UBERON/22/UBERON_0001022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001022 * *Label* = cell body - * *Definition* = Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cell_body[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cell_body, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = TODO - use GO ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001122.md b/md/UBERON/22/UBERON_0001122.md index 60321ed2f9..754aecf6cb 100644 --- a/md/UBERON/22/UBERON_0001122.md +++ b/md/UBERON/22/UBERON_0001122.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001122 * *Label* = scalenus medius - * *Definition* = The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebr. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_medius] + * *Definition* = The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebr. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_medius ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * medial scalene muscle * middle scalene - * musculus scalenus medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13386[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus scalenus medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13386, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * scalenus medius muscle - * musculus scalenus medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_medius[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus scalenus medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_medius, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:13386 * MA:0002370 * SCTID:244844009 - * UMLS:C0224174 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scalenus_Medius] + * UMLS:C0224174 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scalenus_Medius ] * Wikipedia:Scalenus_medius * http://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001222.md b/md/UBERON/22/UBERON_0001222.md index e1f72759d4..3b04ff02c4 100644 --- a/md/UBERON/22/UBERON_0001222.md +++ b/md/UBERON/22/UBERON_0001222.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001222 * *Label* = right ureter - * *Definition* = An ureter that is part of a right side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ureter that is part of a right side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:15571 * MA:0001685 * SCTID:276251000 - * UMLS:C0227682 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Ureter] + * UMLS:C0227682 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Ureter ] * ncithesaurus:Right_Ureter ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001322.md b/md/UBERON/22/UBERON_0001322.md index 3cde7f6ab8..9c8e6bd398 100644 --- a/md/UBERON/22/UBERON_0001322.md +++ b/md/UBERON/22/UBERON_0001322.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001322 * *Label* = sciatic nerve - * *Definition* = The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. In humans, it is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,edited]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sciatic_nerve] + * *Definition* = The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. In humans, it is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,edited]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sciatic_nerve ] * *Comment* = Taxon notes: mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/ ## Synonyms - * ischiadic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sciatic_nerve] - * ischiatic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sciatic_nerve] - * nervus ischiadicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001221] - * nervus ischiadicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sciatic_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus sciaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001221] + * ischiadic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sciatic_nerve ] + * ischiatic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sciatic_nerve ] + * nervus ischiadicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001221 ] + * nervus ischiadicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sciatic_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus sciaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001221 ] ## Cross-references @@ -29,8 +29,8 @@ * NIF_GrossAnatomy:birnlex_1133 * OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA * SCTID:181050003 - * UMLS:C0036394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1133] - * UMLS:C0036394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sciatic_Nerve] + * UMLS:C0036394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1133 ] + * UMLS:C0036394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sciatic_Nerve ] * VHOG:0000894 * Wikipedia:Sciatic_nerve * http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png @@ -46,7 +46,7 @@ * [peripheral nerve](../../UBERON/03/UBERON_0002003.md) * [part_of](../../BFO/50/BFO_0000050.md) some [lumbosacral nerve plexus](../../UBERON/15/UBERON_0001815.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Equivalencies @@ -57,8 +57,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001422.md b/md/UBERON/22/UBERON_0001422.md index dc2f2cb56b..57b1d838a4 100644 --- a/md/UBERON/22/UBERON_0001422.md +++ b/md/UBERON/22/UBERON_0001422.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001422 * *Label* = facial lymphatic vessel - * *Definition* = A lymphatic vessel that is part of a face [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel that is part of a face [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * buccal lymphatic vessel - * face lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * face lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * face lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * face lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * FL ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001522.md b/md/UBERON/22/UBERON_0001522.md index e29ad0489b..cd9291c765 100644 --- a/md/UBERON/22/UBERON_0001522.md +++ b/md/UBERON/22/UBERON_0001522.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001522 * *Label* = flexor carpi ulnaris muscle - * *Definition* = The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_carpi_ulnaris_muscle] + * *Definition* = The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_carpi_ulnaris_muscle ] * *Comment* = AO notes: AAO has a class with the same name, the exact insertion point is unclear; consider grouping "Muscle which originates from the medial condyle of the humerus and inserts on the carpus." [AAO:0010734] ## Synonyms - * flexor carpi ulnaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_carpi_ulnaris_muscle] - * musculus flexor carpi ulnaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_carpi_ulnaris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * flexor carpi ulnaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_carpi_ulnaris_muscle ] + * musculus flexor carpi ulnaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_carpi_ulnaris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:38465 * MA:0002298 * SCTID:244985003 - * UMLS:C0224254 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flexor_Carpi_Ulnaris] + * UMLS:C0224254 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flexor_Carpi_Ulnaris ] * Wikipedia:Flexor_carpi_ulnaris_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001622.md b/md/UBERON/22/UBERON_0001622.md index fe10334255..b17d337a16 100644 --- a/md/UBERON/22/UBERON_0001622.md +++ b/md/UBERON/22/UBERON_0001622.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001622 * *Label* = lacrimal artery - * *Definition* = The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_artery] + * *Definition* = The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * a. lacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * a. lacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49927 * MA:0001988 * SCTID:369324002 - * UMLS:C0226171 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Artery] + * UMLS:C0226171 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Artery ] * Wikipedia:Lacrimal_artery * http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png * ncithesaurus:Lacrimal_Artery @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001722.md b/md/UBERON/22/UBERON_0001722.md index 2095db0715..10aa7303d8 100644 --- a/md/UBERON/22/UBERON_0001722.md +++ b/md/UBERON/22/UBERON_0001722.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001722 * *Label* = medial vestibular nucleus - * *Definition* = The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_vestibular_nucleus] + * *Definition* = The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus 'Deiters')- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_vestibular_nucleus ] ## Synonyms - * chief vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * dorsal vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * nucleus of schwalbe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * nucleus triangularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * principal vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * schwalbe's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * triangular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54611] - * medial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_vestibular_nucleus] - * medioventral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MV] - * nucleus vestibularis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_vestibular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chief vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * dorsal vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * nucleus of schwalbe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * nucleus triangularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * principal vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * schwalbe's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * triangular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54611 ] + * medial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_vestibular_nucleus ] + * medioventral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MV ] + * nucleus vestibularis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_vestibular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,7 +34,7 @@ * MA:0001048 * NeuroNames:717 * SCTID:280174005 - * UMLS:C0036385 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Vestibular_Nucleus] + * UMLS:C0036385 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Vestibular_Nucleus ] * Wikipedia:Medial_vestibular_nucleus * http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray700.png/200px-Gray700.png @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001822.md b/md/UBERON/22/UBERON_0001822.md index fac1540bd0..7532af6390 100644 --- a/md/UBERON/22/UBERON_0001822.md +++ b/md/UBERON/22/UBERON_0001822.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001822 * *Label* = orbital septum - * *Definition* = a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_septum] + * *Definition* = a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_septum ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * septum orbitale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_septum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * septum orbitale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_septum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0001922.md b/md/UBERON/22/UBERON_0001922.md index 18629fdfa4..aa2a185da4 100644 --- a/md/UBERON/22/UBERON_0001922.md +++ b/md/UBERON/22/UBERON_0001922.md @@ -7,15 +7,15 @@ ## Synonyms - * nuclei parafasciculares thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] - * nucleus parafascicularis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] - * nucleus parafascicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] - * nucleus parafascicularis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] - * parafascicular nucleus (vogt) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] + * nuclei parafasciculares thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] + * nucleus parafascicularis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] + * nucleus parafascicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] + * nucleus parafascicularis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] + * parafascicular nucleus (vogt) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] * parafascicular nucleus of thalamus - * parafascicular nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_952] + * parafascicular nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_952 ] * parafascicular thalamic nucleus - * PF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_952[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * PF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_952, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -26,10 +26,10 @@ * FMA:62166 * MA:0000874 * NIF_GrossAnatomy:birnlex_952 - * NeuroNames:324 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_952] + * NeuroNames:324 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_952 ] * SCTID:279150008 - * UMLS:C0228352 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_952] - * UMLS:C0228352 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus] + * UMLS:C0228352 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_952 ] + * UMLS:C0228352 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus ] * ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002022.md b/md/UBERON/22/UBERON_0002022.md index 869a7cce4b..6c989a0a3b 100644 --- a/md/UBERON/22/UBERON_0002022.md +++ b/md/UBERON/22/UBERON_0002022.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002022 * *Label* = insula - * *Definition* = The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Insular_cortex] + * *Definition* = The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Insular_cortex ] * *Comment* = AO notes: two classes in ncit, Central_Lobe is part of temporal lobe ## Synonyms - * central lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * cortex of island [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * insula lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1117] - * insular lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * insular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * island of Reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329] - * lobus insularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67329[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Agranular insular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AI] - * Agranular insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AI] - * Amygdaloid islands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AI] - * agranular insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AI] - * amygdaloid island(s) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AI] - * cortex insularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * insula Reilii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * insula cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * insula of Reil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111] - * insular gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111] - * insulary cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001105] - * morphological insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:111] + * central lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * cortex of island [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * insula lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1117 ] + * insular lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * insular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * island of Reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329 ] + * lobus insularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67329, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Agranular insular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AI ] + * Agranular insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AI ] + * Amygdaloid islands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AI ] + * agranular insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AI ] + * amygdaloid island(s) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AI ] + * cortex insularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * insula Reilii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * insula cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * insula of Reil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111 ] + * insular gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111 ] + * insulary cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001105 ] + * morphological insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:111 ] ## Cross-references @@ -40,10 +40,10 @@ * FMA:67329 * MA:0000909 * NIF_GrossAnatomy:birnlex_1117 - * NeuroNames:111 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1117] + * NeuroNames:111 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1117 ] * OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA * SCTID:279201009 - * UMLS:C0021640 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1117] + * UMLS:C0021640 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1117 ] * Wikipedia:Insular_cortex * http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png * ncithesaurus:Central_Lobe @@ -70,8 +70,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002122.md b/md/UBERON/22/UBERON_0002122.md index ca6ff56827..076f324e81 100644 --- a/md/UBERON/22/UBERON_0002122.md +++ b/md/UBERON/22/UBERON_0002122.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002122 * *Label* = capsule of thymus - * *Definition* = the fibrous connective tissue surrounding the thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002368] + * *Definition* = the fibrous connective tissue surrounding the thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002368 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:72204 * MA:0000766 * SCTID:188181003 - * UMLS:C0229945 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Capsule] + * UMLS:C0229945 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Capsule ] * ncithesaurus:Thymic_Capsule ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002222.md b/md/UBERON/22/UBERON_0002222.md index 97e321c289..9e216d1c9b 100644 --- a/md/UBERON/22/UBERON_0002222.md +++ b/md/UBERON/22/UBERON_0002222.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002222 * *Label* = perichondrium - * *Definition* = Fibrous connective tissue that surrounds cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000036[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Fibrous connective tissue that surrounds cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000036, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of connective tissue which surrounds cartilage.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002322.md b/md/UBERON/22/UBERON_0002322.md index 3181b566ca..2fe4ed22e9 100644 --- a/md/UBERON/22/UBERON_0002322.md +++ b/md/UBERON/22/UBERON_0002322.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002322 * *Label* = periventricular nucleus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periventricular_nucleus] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periventricular_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * ventral zone of periventricular hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000260] + * ventral zone of periventricular hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000260 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002422.md b/md/UBERON/22/UBERON_0002422.md index 39e4ecbf30..cee1a00e61 100644 --- a/md/UBERON/22/UBERON_0002422.md +++ b/md/UBERON/22/UBERON_0002422.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002422 * *Label* = fourth ventricle - * *Definition* = Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1256] + * *Definition* = Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1256 ] ## Synonyms - * ventricle IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000110] - * rhombencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000110] - * 4th ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000196] - * IVth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000006] - * fourth ventricle proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V4] - * hindbrain ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000006] - * rhombencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000006] - * ventricle of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003426] - * ventricle of rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003426] - * ventriculus quartus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fourth_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visual area V4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V4] + * ventricle IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000110 ] + * rhombencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000110 ] + * 4th ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000196 ] + * IVth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000006 ] + * fourth ventricle proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V4 ] + * hindbrain ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000006 ] + * rhombencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000006 ] + * ventricle of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003426 ] + * ventricle of rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003426 ] + * ventriculus quartus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fourth_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visual area V4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V4 ] ## Cross-references @@ -41,7 +41,7 @@ * OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA * SCTID:180932000 * TAO:0000110 - * UMLS:C0149556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fourth_Ventricle_of_the_Brain] + * UMLS:C0149556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fourth_Ventricle_of_the_Brain ] * VHOG:0000006 * Wikipedia:Fourth_ventricle * XAO:0003099 @@ -63,7 +63,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [brain ventricle](../../UBERON/86/UBERON_0004086.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms @@ -75,8 +75,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO][GO:0021592]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002522.md b/md/UBERON/22/UBERON_0002522.md index e81bf5273c..31652fe5b1 100644 --- a/md/UBERON/22/UBERON_0002522.md +++ b/md/UBERON/22/UBERON_0002522.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002522 * *Label* = tunica media - * *Definition* = The middle layer of an artery or vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_media] + * *Definition* = The middle layer of an artery or vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_media ] * *Comment* = May be composed of smooth muscle and elastic tissue ## Synonyms - * tunica media vasorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002011] - * tunica media vasorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_media[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica media vasorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002011 ] + * tunica media vasorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_media, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002855 * MESH:A02.633.570.491.800 * SCTID:61695000 - * UMLS:C0162867 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tunica_Media] + * UMLS:C0162867 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tunica_Media ] * Wikipedia:Tunica_media * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002622.md b/md/UBERON/22/UBERON_0002622.md index 406225f4c4..226c38c206 100644 --- a/md/UBERON/22/UBERON_0002622.md +++ b/md/UBERON/22/UBERON_0002622.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002622 * *Label* = preoptic periventricular nucleus - * *Definition* = The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus] + * *Definition* = The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus ] ## Synonyms - * nucleus preopticus periventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62324[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periventricular preoptic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62324] - * preoptic periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62324] - * POP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1201[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Periventricular hypothalamic nucleus, preoptic part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVpo] - * dorsal periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:379] - * nucleus periventricularis hypothalami, pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:379[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus periventricularis praeopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:379[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus periventricularis preopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:379[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periventricular nucleus, anterior portion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:379] + * nucleus preopticus periventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62324, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periventricular preoptic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62324 ] + * preoptic periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62324 ] + * POP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1201, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Periventricular hypothalamic nucleus, preoptic part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVpo ] + * dorsal periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:379 ] + * nucleus periventricularis hypothalami, pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:379, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus periventricularis praeopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:379, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus periventricularis preopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:379, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periventricular nucleus, anterior portion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:379 ] ## Cross-references @@ -24,10 +24,10 @@ * BAMS:PVpo * FMA:62324 * NIF_GrossAnatomy:birnlex_1201 - * NeuroNames:379 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1201] + * NeuroNames:379 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1201 ] * SCTID:369127000 - * UMLS:C0175314 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1201] - * UMLS:C1289554 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1201] + * UMLS:C0175314 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1201 ] + * UMLS:C1289554 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1201 ] * Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002722.md b/md/UBERON/22/UBERON_0002722.md index 81084a7638..90b8f2efbb 100644 --- a/md/UBERON/22/UBERON_0002722.md +++ b/md/UBERON/22/UBERON_0002722.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002722 * *Label* = trochlear nucleus - * *Definition* = The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_nucleus] + * *Definition* = The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_nucleus ] ## Synonyms - * fourth cranial nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54518] - * motor nucleus IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000450] - * nIV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000450] - * nucleus nervi trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54518[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of trochlear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54518] - * trochlear IV nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001075] - * trochlear motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000450] - * 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1488[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus nervi trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fourth cranial nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54518 ] + * motor nucleus IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000450 ] + * nIV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000450 ] + * nucleus nervi trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54518, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of trochlear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54518 ] + * trochlear IV nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001075 ] + * trochlear motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000450 ] + * 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1488, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus nervi trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,10 +28,10 @@ * FMA:54518 * MA:0001075 * NIF_GrossAnatomy:birnlex_1488 - * NeuroNames:513 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1488] + * NeuroNames:513 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1488 ] * SCTID:280163001 * TAO:0000450 - * UMLS:C0152406 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1488] + * UMLS:C0152406 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1488 ] * Wikipedia:Trochlear_nucleus * ZFA:0000450 * http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002822.md b/md/UBERON/22/UBERON_0002822.md index 8fe3014ce8..b99cf3c20c 100644 --- a/md/UBERON/22/UBERON_0002822.md +++ b/md/UBERON/22/UBERON_0002822.md @@ -11,7 +11,7 @@ * FMA:58671 * NIF_GrossAnatomy:birnlex_2542 - * UMLS:C0934637 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2542] + * UMLS:C0934637 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2542 ] ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0002922.md b/md/UBERON/22/UBERON_0002922.md index 2066b1a350..ab8c4ce418 100644 --- a/md/UBERON/22/UBERON_0002922.md +++ b/md/UBERON/22/UBERON_0002922.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002922 * *Label* = olfactory trigone - * *Definition* = The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_trigone] + * *Definition* = The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_trigone ] ## Synonyms - * trigonum olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4042] - * olt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4042[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * trigonum olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_trigone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trigonum olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4042 ] + * olt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4042, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * trigonum olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_trigone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,10 +17,10 @@ * BAMS:olt * FMA:74883 * NIF_GrossAnatomy:birnlex_4042 - * NeuroNames:34 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4042] + * NeuroNames:34 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4042 ] * SCTID:369102007 - * UMLS:C0228279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4042] - * UMLS:C0228279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trigonum_Olfactorium] + * UMLS:C0228279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4042 ] + * UMLS:C0228279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trigonum_Olfactorium ] * Wikipedia:Olfactory_trigone * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003022.md b/md/UBERON/22/UBERON_0003022.md index 01a7301f75..b2e5959acd 100644 --- a/md/UBERON/22/UBERON_0003022.md +++ b/md/UBERON/22/UBERON_0003022.md @@ -7,11 +7,11 @@ ## Synonyms - * lobe of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_922] - * cerebral cortical segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68603] - * lobes of the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_922] - * regional organ part of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68603] - * segment of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_922] + * lobe of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_922 ] + * cerebral cortical segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68603 ] + * lobes of the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_922 ] + * regional organ part of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68603 ] + * segment of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_922 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003122.md b/md/UBERON/22/UBERON_0003122.md index 7a4096133d..4ddd14a76e 100644 --- a/md/UBERON/22/UBERON_0003122.md +++ b/md/UBERON/22/UBERON_0003122.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003122 * *Label* = aortic arch 5 - * *Definition* = the vessels formed within the fifth pair of branchial arches in embryogenesis. In humans the 5th arch disappears on both sides. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = the vessels formed within the fifth pair of branchial arches in embryogenesis. In humans the 5th arch disappears on both sides. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * AA5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005009] - * fifth aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000352] + * AA5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005009 ] + * fifth aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000352 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fifth arch disappears on both sides[WP][Wikipedia:Aortic_arches#Arch_5]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fifth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003222.md b/md/UBERON/22/UBERON_0003222.md index ace0ed68fd..2d6f176138 100644 --- a/md/UBERON/22/UBERON_0003222.md +++ b/md/UBERON/22/UBERON_0003222.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003222 * *Label* = flexor digitorum superficialis - * *Definition* = an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_superficialis_muscle] + * *Definition* = an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_superficialis_muscle ] ## Synonyms - * flexor digitorum superficialis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_superficialis_muscle] - * musculus flexor digitorum superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_superficialis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * flexor digitorum superficialis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_superficialis_muscle ] + * musculus flexor digitorum superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_superficialis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003322.md b/md/UBERON/22/UBERON_0003322.md index 47a2746e29..bcbde41c52 100644 --- a/md/UBERON/22/UBERON_0003322.md +++ b/md/UBERON/22/UBERON_0003322.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003322 * *Label* = mesenchyme of shoulder - * *Definition* = Mesenchyme that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * shoulder mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * shoulder mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003422.md b/md/UBERON/22/UBERON_0003422.md index 9bb531b281..c04ebe52af 100644 --- a/md/UBERON/22/UBERON_0003422.md +++ b/md/UBERON/22/UBERON_0003422.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003422 * *Label* = mesenchyme of umbilical cord - * *Definition* = a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wharton's_jelly] + * *Definition* = a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wharton's_jelly ] * *Comment* = todo - check ## Synonyms - * Wharton's jelly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26127] - * umbilical cord mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Wharton's jelly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26127 ] + * umbilical cord mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003522.md b/md/UBERON/22/UBERON_0003522.md index ba55ae9a21..2d6076a75b 100644 --- a/md/UBERON/22/UBERON_0003522.md +++ b/md/UBERON/22/UBERON_0003522.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003522 * *Label* = manual digit blood vessel - * *Definition* = A blood vessel that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of hand blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000621] - * terminal segment of free upper limb digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * blood vessel of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of hand blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000621 ] + * terminal segment of free upper limb digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003622.md b/md/UBERON/22/UBERON_0003622.md index 38eede7b31..574c989f00 100644 --- a/md/UBERON/22/UBERON_0003622.md +++ b/md/UBERON/22/UBERON_0003622.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003622 * *Label* = manual digit 2 - * *Definition* = 2nd digit of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Index_finger] + * *Definition* = 2nd digit of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Index_finger ] * *Comment* = Anurans lack manual digit 1, so manual digit 2 is the digit after the prepollex (Phenotype RCN Oct 2012) ## Synonyms * 2nd digit of hand * 2nd finger - * digit 2 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17432] - * finger 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000517] - * fore digit II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010640] - * fore limb digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000455] - * second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24946] + * digit 2 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17432 ] + * finger 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000517 ] + * fore digit II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010640 ] + * fore limb digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000455 ] + * second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24946 ] * second finger - * hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * index finger ## Cross-references @@ -28,7 +28,7 @@ * FMA:24946 * MA:0000455 * SCTID:362758006 - * UMLS:C0230388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_2] + * UMLS:C0230388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_2 ] * Wikipedia:Index_finger * http://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 2](../../UBERON/49/UBERON_0006049.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = indicis * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit). * *[ambiguous_for_taxon](../../core#ambiguous/on/core#ambiguous_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003722.md b/md/UBERON/22/UBERON_0003722.md index a72a1cc802..443d53c7f3 100644 --- a/md/UBERON/22/UBERON_0003722.md +++ b/md/UBERON/22/UBERON_0003722.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003722 * *Label* = middle cranial fossa - * *Definition* = The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.456.830.165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cranial_fossa] + * *Definition* = The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.456.830.165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cranial_fossa ] ## Synonyms - * middle fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cranial_fossa] - * fossa cranii media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cranial_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cranial_fossa ] + * fossa cranii media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cranial_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:54369 * GAID:84 * MESH:A01.456.830.165 - * UMLS:C0230045 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Fossa] + * UMLS:C0230045 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Fossa ] * Wikipedia:Middle_cranial_fossa * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png * ncithesaurus:Middle_Fossa @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003822.md b/md/UBERON/22/UBERON_0003822.md index a30ebfc06b..404db261d5 100644 --- a/md/UBERON/22/UBERON_0003822.md +++ b/md/UBERON/22/UBERON_0003822.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003822 * *Label* = forelimb stylopod - * *Definition* = A stylopod that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stylopod that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here. // comment: todo - check fore propodium in AAO // Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here ## Synonyms * brachial region - * brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005057] - * fore propodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000199] + * brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005057 ] + * fore propodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000199 ] * forelimb propodium - * forelimb stylopodial element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * forelimb stylopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * forelimb stylopodial element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * forelimb stylopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * proximal segment of free upper limb - * regio brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24890[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24890, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stylopod of arm * stylopod of forelimb - * upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000035[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * wing stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24890[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000035, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * wing stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24890, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -34,7 +34,7 @@ * MESH:A01.378.800.075 * OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA * SCTID:302538001 - * UMLS:C0446516 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arm] + * UMLS:C0446516 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arm ] * VHOG:0000343 * VSAO:0005057 * galen:Arm @@ -52,7 +52,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [stylopod](../../UBERON/72/UBERON_0002472.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the hindleg corresponding to the humerus.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0003922.md b/md/UBERON/22/UBERON_0003922.md index 0dc4280eaf..0baf4e24fa 100644 --- a/md/UBERON/22/UBERON_0003922.md +++ b/md/UBERON/22/UBERON_0003922.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003922 * *Label* = pancreatic bud - * *Definition* = The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. In humans, an embryonic structure that is an outgrowth of the duodenum during embryogenesis - joins together to form the adult pancreas[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16417468[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_bud] + * *Definition* = The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. In humans, an embryonic structure that is an outgrowth of the duodenum during embryogenesis - joins together to form the adult pancreas[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16417468, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_bud ] ## Synonyms - * pancreatic buds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001390[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * pancreatic buds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001390, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * pancreatic anlage ## Cross-references @@ -15,7 +15,7 @@ * EFO:0003470 * SCTID:360398004 * TAO:0001390 - * UMLS:C1283285 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Bud] + * UMLS:C1283285 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Bud ] * Wikipedia:Pancreatic_bud * ZFA:0001390 * http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004022.md b/md/UBERON/22/UBERON_0004022.md index ea2b5dd46b..4a5db1c68d 100644 --- a/md/UBERON/22/UBERON_0004022.md +++ b/md/UBERON/22/UBERON_0004022.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004022 * *Label* = embryonic neuroepithelium - * *Definition* = the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004261] + * *Definition* = the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004261 ] ## Synonyms - * neuroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0001008] - * neurepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000314] + * neuroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0001008 ] + * neurepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000314 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004122.md b/md/UBERON/22/UBERON_0004122.md index 910025cd43..fd2ff8f8b2 100644 --- a/md/UBERON/22/UBERON_0004122.md +++ b/md/UBERON/22/UBERON_0004122.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004122 * *Label* = genitourinary system - * *Definition* = Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000286] + * *Definition* = Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000286 ] ## Synonyms * urogenital system * GU tract * UG tract - * Urogenitalsystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003091] + * Urogenitalsystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003091 ] * genitourinary tract - * urogenital tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003091] + * urogenital tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003091 ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A05 * OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g * SCTID:278861008 - * UMLS:C0042066 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Genitourinary_System] + * UMLS:C0042066 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Genitourinary_System ] * VHOG:0000286 * XAO:0000140 * galen:GenitoUrinarySystem @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [has_part](../../BFO/51/BFO_0000051.md) some [renal system](../../UBERON/08/UBERON_0001008.md) and [has_part](../../BFO/51/BFO_0000051.md) some [reproductive system](../../UBERON/90/UBERON_0000990.md) ## Other Logical Axioms @@ -61,8 +61,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = genitourinary * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = urogenital * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004222.md b/md/UBERON/22/UBERON_0004222.md index f6ee576e44..91bd2497e0 100644 --- a/md/UBERON/22/UBERON_0004222.md +++ b/md/UBERON/22/UBERON_0004222.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004222 * *Label* = stomach smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001818] - * gastric smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001627] - * stomach muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001818] + * involuntary muscle of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001818 ] + * gastric smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001627 ] + * stomach muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001818 ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004322.md b/md/UBERON/22/UBERON_0004322.md index 4f16eac324..332862300a 100644 --- a/md/UBERON/22/UBERON_0004322.md +++ b/md/UBERON/22/UBERON_0004322.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004322 * *Label* = middle phalanx of manual digit 4 - * *Definition* = A middle phalanx that is part of a hand digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a hand digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th digit of hand intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th digit of hand middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth middle phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23935] - * hand digit 4 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 4th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 4th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 4th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 4th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23935] - * middle phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 4th digit of hand intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th digit of hand middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth middle phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23935 ] + * hand digit 4 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 4th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 4th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 4th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 4th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23935 ] + * middle phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004422.md b/md/UBERON/22/UBERON_0004422.md index ee7dc232c8..3e5ec1d27e 100644 --- a/md/UBERON/22/UBERON_0004422.md +++ b/md/UBERON/22/UBERON_0004422.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004422 * *Label* = proximal epiphysis of first metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of first metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42788] - * first metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42788] + * base of first metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42788 ] + * first metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42788 ] * proximal epiphysis of metacarpal 1 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 1](../../UBERON/45/UBERON_0003645.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004522.md b/md/UBERON/22/UBERON_0004522.md index e20afc88fe..f0de525d65 100644 --- a/md/UBERON/22/UBERON_0004522.md +++ b/md/UBERON/22/UBERON_0004522.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004522 * *Label* = vasculature of musculoskeletal system - * *Definition* = A vasculature that is part of a musculoskeletal system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a musculoskeletal system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [musculoskeletal system](../../UBERON/04/UBERON_0002204.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004622.md b/md/UBERON/22/UBERON_0004622.md index 76cd44f1fe..4c13ddc1b9 100644 --- a/md/UBERON/22/UBERON_0004622.md +++ b/md/UBERON/22/UBERON_0004622.md @@ -7,10 +7,10 @@ ## Synonyms - * First sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13077] - * First segment of sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13077] - * S1 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13077] - * first sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13077] + * First sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13077 ] + * First segment of sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13077 ] + * S1 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13077 ] + * first sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13077 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:13077 * MA:0001434 * SCTID:181846009 - * UMLS:C0223598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:S1_Vertebra] + * UMLS:C0223598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:S1_Vertebra ] * ncithesaurus:S1_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004722.md b/md/UBERON/22/UBERON_0004722.md index 56167a9a80..7cf8a60cf7 100644 --- a/md/UBERON/22/UBERON_0004722.md +++ b/md/UBERON/22/UBERON_0004722.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004722 * *Label* = deep cervical lymph node - * *Definition* = The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_lymph_nodes] + * *Definition* = The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_lymph_nodes ] ## Synonyms - * lower jugular nodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_lymph_nodes] - * middle jugular nodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_lymph_nodes] - * upper jugular nodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_lymph_nodes] + * lower jugular nodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_lymph_nodes ] + * middle jugular nodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_lymph_nodes ] + * upper jugular nodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_lymph_nodes ] ## Cross-references * MA:0002885 * SCTID:279145002 - * UMLS:C0458298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Cervical_Lymph_Node] + * UMLS:C0458298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Cervical_Lymph_Node ] * Wikipedia:Deep_cervical_lymph_nodes * http://upload.wikimedia.org/wikipedia/commons/b/b6/Illu_lymph_chain02.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Illu_lymph_chain02.jpg/200px-Illu_lymph_chain02.jpg @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004822.md b/md/UBERON/22/UBERON_0004822.md index f20257aa64..54ccb2ce04 100644 --- a/md/UBERON/22/UBERON_0004822.md +++ b/md/UBERON/22/UBERON_0004822.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004822 * *Label* = extrahepatic bile duct epithelium - * *Definition* = An epithelium that is part of a extrahepatic bile duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a extrahepatic bile duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of extrahepatic bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of extrahepatic bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * extrahepatic bile duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of extrahepatic bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of extrahepatic bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * extrahepatic bile duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002661 - * UMLS:C1711347 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extrahepatic_Bile_Duct_Epithelium] + * UMLS:C1711347 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extrahepatic_Bile_Duct_Epithelium ] * ncithesaurus:Extrahepatic_Bile_Duct_Epithelium ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extrahepatic bile duct](../../UBERON/03/UBERON_0003703.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0004922.md b/md/UBERON/22/UBERON_0004922.md index a0d4ce40b4..4c566fd000 100644 --- a/md/UBERON/22/UBERON_0004922.md +++ b/md/UBERON/22/UBERON_0004922.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004922 * *Label* = postnatal subventricular zone - * *Definition* = A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] + * *Definition* = A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] * *Comment* = Structure notes: WP divides this into 4 layers. ## Synonyms - * SEZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * SVZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * adult subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] - * brain subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000817] - * postnatal subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] - * subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000817] + * SEZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * SVZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * adult subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] + * brain subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000817 ] + * postnatal subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] + * subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000817 ] * subventricular zone of brain * postnatal subependymal layer * postnatal subependymal plate * postnatal subependymal zone - * subependymal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] - * subependymal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] - * subependymal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004275] + * subependymal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] + * subependymal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] + * subependymal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004275 ] ## Cross-references @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A paired brain structure situated throughout the lateral walls of the lateral ventricles. It has been associated with having four distinct layers of variable thickness and cell density, as well as cellular composition[WP][Wikipedia:Subventricular_zone]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The subventricular zone (SVZ) is a paired brain structure situated throughout the lateral walls of the lateral ventricles. Along with the subgranular zone of dentate gyrus, subventricular zone serves as a source of neural stem cells in the process of adult neurogenesis. It harbors the largest population of proliferating cells in the adult brain of rodents, monkeys and humans. Neurons generated in SVZ travel to the olfactory bulb via the rostral migratory stream[BTO:0003090]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The subventricular zone (SVZ) is one of two sources of adult-born neurons in the mammalian brain, the other being the subgranular zone (SGZ) of the hippocampus. In most adult mammals, the SVZ is a three-layered sheath that lies along the lateral wall of the lateral ventricle and consists of type A, B, and C cells. Type A rest along the ventricle wall and are neuronal precursor cells, Type B are adjacent astrocytes, and Type C are immature precursors to the Type A neuroblasts. The neuronal precursor cells travel along the rostral migratory stream ensheathed in a tube of Type B astrocytes, until they reach the olfactory bulb. There they integrate into the existing cellular network and mature into local interneurons. While the majority become adult-born granule cells, a subset become periglomerular cells. Interestingly, the human SVZ differs from other mammals' in several ways. It consists of four layers rather than three: ependymal cells (layer I), a hypo cellular gap (layer II), a ribbon of astrocytes (layer III), and a transitional zone (layer IV). The astrocytes are capable of differentiating into many kinds of tissue including new neurons. However, there is no evidence that the proliferating neurons travel along the rostral migratory stream in a chain to populate the olfactory bulb with new interneurons, as is the case for other mammals[NIF_GrossAnatomy:nlx_144262]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005022.md b/md/UBERON/22/UBERON_0005022.md index d5071f8b71..d65e81a621 100644 --- a/md/UBERON/22/UBERON_0005022.md +++ b/md/UBERON/22/UBERON_0005022.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005022 * *Label* = mucosa of nasopharynx - * *Definition* = A mucosa that is part of a nasopharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a nasopharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005122.md b/md/UBERON/22/UBERON_0005122.md index ebaed5b111..e1561f158a 100644 --- a/md/UBERON/22/UBERON_0005122.md +++ b/md/UBERON/22/UBERON_0005122.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005122 * *Label* = metanephric macula densa - * *Definition* = The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072227] + * *Definition* = The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072227 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula densa](../../UBERON/35/UBERON_0002335.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005222.md b/md/UBERON/22/UBERON_0005222.md index 23efb930fb..767f2c5f7c 100644 --- a/md/UBERON/22/UBERON_0005222.md +++ b/md/UBERON/22/UBERON_0005222.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005222 * *Label* = liver left lobe parenchyma - * *Definition* = A parenchyma that is part of a left lobe of liver [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a left lobe of liver [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * parenchyma of left lobe of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71658] + * parenchyma of left lobe of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71658 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lobe of liver](../../UBERON/15/UBERON_0001115.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005322.md b/md/UBERON/22/UBERON_0005322.md index d50c9f16ce..0c38d1e92b 100644 --- a/md/UBERON/22/UBERON_0005322.md +++ b/md/UBERON/22/UBERON_0005322.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005322 * *Label* = mesonephric nephron - * *Definition* = A nephron that is part of a mesonephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A nephron that is part of a mesonephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * nephron of mesonephros - * stage IV nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005592] + * stage IV nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005592 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron](../../UBERON/85/UBERON_0001285.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The structure that is the basic functional unit of the kidney.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005422.md b/md/UBERON/22/UBERON_0005422.md index ab21d0e1a0..58cc8c7662 100644 --- a/md/UBERON/22/UBERON_0005422.md +++ b/md/UBERON/22/UBERON_0005422.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005422 * *Label* = pelvic appendage apical ectodermal ridge - * *Definition* = An apical ectodermal ridge that is part of a pelvic appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An apical ectodermal ridge that is part of a pelvic appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apical ectodermal ridge hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001066] - * apical ectodermal ridge hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001066] - * lower lmb bud apical ectodermal ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003194] - * AER hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001066] - * apical ectodermal ridge pelvic fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001385] + * apical ectodermal ridge hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001066 ] + * apical ectodermal ridge hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001066 ] + * lower lmb bud apical ectodermal ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003194 ] + * AER hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001066 ] + * apical ectodermal ridge pelvic fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001385 ] * leg AER ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apical ectodermal ridge](../../UBERON/56/UBERON_0004356.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage bud](../../UBERON/20/UBERON_0005420.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Apical ectodermal ridge that is part of the pelvic fin bud.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Pectoral and pelvic fins are homologous to the tetrapod fore and hindlimb, respectively. (...) The zebrafish AER [apical ectodermal ridge] is an apical ectodermal thickening at the distal tip of the fin bud and consists of wedge-shaped cells of the basal stratum. The AER is observed only transiently, and from 36 hpf onwards the cells of this region form the apical fold (AF), which consists of a dorsal and a ventral layer of cylindrically-shaped ectodermal cells extending from the anterior to the posterior fin margin. Despite the change in shape, the AF still carries out the same functions as the AER. Indeed, although the AER receives its name from its characteristic shape, being composed of a pseudostratified ectoderm in the chicken and a polystratified ectoderm in the mouse, this independence of AER morphology from its function is also observed in tetrapods. The AF also expresses similar molecular markers to the tetrapod AER, suggesting that it fulfills similar functions in the fin as the AER does in tetrapod limbs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005622.md b/md/UBERON/22/UBERON_0005622.md index 16f6afded2..38ea78492c 100644 --- a/md/UBERON/22/UBERON_0005622.md +++ b/md/UBERON/22/UBERON_0005622.md @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A study of embryos shows that in all vertebrates six arterial arches link the ventral aorta with a pair of lateral dorsal aortae on each side of the body. The latter unite posteriorly to form a single median dorsal aorta wich takes blood to the body.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0005722.md b/md/UBERON/22/UBERON_0005722.md index 32fc332415..ce8b3421f5 100644 --- a/md/UBERON/22/UBERON_0005722.md +++ b/md/UBERON/22/UBERON_0005722.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005722 * *Label* = obsolete nephrotome - * *Definition* = The nephrotome is a section of the mesoderm. It gives rise to the pronephros and eventually to the rest of the kidney. A nephrotome is an obsolete term used to describe rounded mesodermal portions of the forming pronephros. In old texts the pronephros is described as forming through the fusion of multiple nephrotomes. Modern visualization methods such as scanning electron microscopy, in situ hybridization and confocal microscopy, combined with the simple approach of peeling off the epidermis to see the forming kidney, have shown that this is not the case. Nephric mesenchyme separates from the intermediate mesoderm as a single elongated primordia. As this primordia begins to undergo epithelialization the anterior portions of the pronephros form rounded protrusions, which then later become the dorsal branches of the pronephros that link to nephrostomes (distinct from nephrotomes). These rounded bumps are probably the structures observed in histological sections that are referred to as nephrotomes. Nephrostomes are thin ciliated funnels that link pronephric nephrons to the ceolom, and are not related to nephrotomes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephrotome] + * *Definition* = The nephrotome is a section of the mesoderm. It gives rise to the pronephros and eventually to the rest of the kidney. A nephrotome is an obsolete term used to describe rounded mesodermal portions of the forming pronephros. In old texts the pronephros is described as forming through the fusion of multiple nephrotomes. Modern visualization methods such as scanning electron microscopy, in situ hybridization and confocal microscopy, combined with the simple approach of peeling off the epidermis to see the forming kidney, have shown that this is not the case. Nephric mesenchyme separates from the intermediate mesoderm as a single elongated primordia. As this primordia begins to undergo epithelialization the anterior portions of the pronephros form rounded protrusions, which then later become the dorsal branches of the pronephros that link to nephrostomes (distinct from nephrotomes). These rounded bumps are probably the structures observed in histological sections that are referred to as nephrotomes. Nephrostomes are thin ciliated funnels that link pronephric nephrons to the ceolom, and are not related to nephrotomes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephrotome ] ## Synonyms - * intermediate cell mass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003673] - * nephromere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephrotome] + * intermediate cell mass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003673 ] + * nephromere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephrotome ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005722 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_0005922.md b/md/UBERON/22/UBERON_0005922.md index 496ffa5dad..d7c655ed1a 100644 --- a/md/UBERON/22/UBERON_0005922.md +++ b/md/UBERON/22/UBERON_0005922.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005922 * *Label* = inferior nasal concha - * *Definition* = The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_nasal_concha] + * *Definition* = The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_nasal_concha ] * *Comment* = note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha ## Synonyms - * inferior nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54736] + * inferior nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54736 ] * inferior nasal turbinate bone - * inferior turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54736] - * concha nasalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_nasal_concha[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * concha nasi inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_nasal_concha[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_nasal_concha] - * inferior turbinated [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_nasal_concha] + * inferior turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54736 ] + * concha nasalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_nasal_concha, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * concha nasi inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_nasal_concha, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_nasal_concha ] + * inferior turbinated [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_nasal_concha ] ## Cross-references * FMA:54736 * SCTID:361932000 * SCTID:362882006 - * UMLS:C0225434 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Turbinate] + * UMLS:C0225434 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Turbinate ] * Wikipedia:Inferior_nasal_concha * http://upload.wikimedia.org/wikipedia/commons/6/62/Gray192.png * ncithesaurus:Inferior_Turbinate @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006022.md b/md/UBERON/22/UBERON_0006022.md index ac5a263f65..36e328eb9c 100644 --- a/md/UBERON/22/UBERON_0006022.md +++ b/md/UBERON/22/UBERON_0006022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006022 * *Label* = interdigital region between digits 3 and 4 - * *Definition* = An interdigital region that adjacent_to a digit 3 and adjacent_to a digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a digit 3 and adjacent_to a digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) and [adjacent to](../../RO/20/RO_0002220.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006122.md b/md/UBERON/22/UBERON_0006122.md index 8f71c6c2ae..458fec1c11 100644 --- a/md/UBERON/22/UBERON_0006122.md +++ b/md/UBERON/22/UBERON_0006122.md @@ -7,7 +7,7 @@ ## Synonyms - * A8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090301] + * A8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090301 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:66581 * *[consider](../../er/oboInOwl#consider.md)* = NIF_GrossAnatomy:nlx_anat_20090301 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006122 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_0006222.md b/md/UBERON/22/UBERON_0006222.md index d87c24f989..426b104b7e 100644 --- a/md/UBERON/22/UBERON_0006222.md +++ b/md/UBERON/22/UBERON_0006222.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006222 * *Label* = future diencephalon - * *Definition* = A multi-tissue structure that has_potential_to_develop_into a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that has_potential_to_develop_into a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * presumptive diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000574] + * presumptive diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000574 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006322.md b/md/UBERON/22/UBERON_0006322.md index 4d796a3511..592e3c5743 100644 --- a/md/UBERON/22/UBERON_0006322.md +++ b/md/UBERON/22/UBERON_0006322.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006322 * *Label* = inferior rectus extraocular muscle - * *Definition* = a muscle in the orbit that depresses, adducts, and helps extort (rotate laterally) the eye. The inferior rectus muscle is the only muscle that is capable of depressing the pupil when it is in a fully abducted position. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_rectus_muscle] + * *Definition* = a muscle in the orbit that depresses, adducts, and helps extort (rotate laterally) the eye. The inferior rectus muscle is the only muscle that is capable of depressing the pupil when it is in a fully abducted position. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_rectus_muscle ] ## Synonyms - * inferior rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49036] + * inferior rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49036 ] * inferior rectus muscle - * ventral rectus extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001130] - * musculus rectus inferior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_rectus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000457[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ventral rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000457] + * ventral rectus extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001130 ] + * musculus rectus inferior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_rectus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000457, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ventral rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000457 ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001279 * SCTID:181154009 * TAO:0000457 - * UMLS:C0582819 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Rectus_Muscle] + * UMLS:C0582819 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Rectus_Muscle ] * VHOG:0001130 * Wikipedia:Inferior_rectus_muscle * ZFA:0000457 @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006722.md b/md/UBERON/22/UBERON_0006722.md index 40107083f3..3c0d96d2f1 100644 --- a/md/UBERON/22/UBERON_0006722.md +++ b/md/UBERON/22/UBERON_0006722.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006722 * *Label* = manubrium of malleus - * *Definition* = The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus] + * *Definition* = The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus ] ## Synonyms - * malleus handle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52760] - * manubrium of malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52760] - * handle of malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] - * malleal manubrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] - * malleus handle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] - * malleus manubrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] - * manubrium mallei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] - * manubrium of malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002985] + * malleus handle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52760 ] + * manubrium of malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52760 ] + * handle of malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] + * malleal manubrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] + * malleus handle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] + * malleus manubrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] + * manubrium mallei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] + * manubrium of malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002985 ] ## Cross-references @@ -29,7 +29,7 @@ * [zone of bone organ](../../UBERON/13/UBERON_0005913.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) * [surrounded_by](../../RO/19/RO_0002219.md) some [tympanic membrane](../../UBERON/64/UBERON_0002364.md) ## Equivalencies @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006822.md b/md/UBERON/22/UBERON_0006822.md index 0ed8df6c44..f0e6227788 100644 --- a/md/UBERON/22/UBERON_0006822.md +++ b/md/UBERON/22/UBERON_0006822.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006822 * *Label* = proximal epiphysis of ulna - * *Definition* = The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_ulna] + * *Definition* = The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_ulna ] ## Synonyms - * caput ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33751[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * head of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33751] - * proximal end of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33751] - * upper end of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33751] - * caput ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_ulna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caput ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33751, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * head of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33751 ] + * proximal end of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33751 ] + * upper end of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33751 ] + * caput ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_ulna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ulna](../../UBERON/24/UBERON_0001424.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0006922.md b/md/UBERON/22/UBERON_0006922.md index 70b0026d49..8ce1672ef3 100644 --- a/md/UBERON/22/UBERON_0006922.md +++ b/md/UBERON/22/UBERON_0006922.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006922 * *Label* = cervix squamous epithelium - * *Definition* = The squamous epithelium of the cervical portio is similar to that of the vagina, except that it is generally smooth and lacks rete pegs. Colposcopically, it appears featureless except for a fine network of vessels which is sometimes visible. The relative opacity and pale pink coloration of the squamous epithelium derives from its multi-layered histology and the location of its supporting vessels below the basement membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] + * *Definition* = The squamous epithelium of the cervical portio is similar to that of the vagina, except that it is generally smooth and lacks rete pegs. Colposcopically, it appears featureless except for a fine network of vessels which is sometimes visible. The relative opacity and pale pink coloration of the squamous epithelium derives from its multi-layered histology and the location of its supporting vessels below the basement membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0001725 - * UMLS:C1707351 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervix_Squamous_Epithelium] + * UMLS:C1707351 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervix_Squamous_Epithelium ] * ncithesaurus:Cervix_Squamous_Epithelium ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) and [squamous epithelium](../../UBERON/14/UBERON_0006914.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007122.md b/md/UBERON/22/UBERON_0007122.md index 6e3f8bfb9a..ac02abb43f 100644 --- a/md/UBERON/22/UBERON_0007122.md +++ b/md/UBERON/22/UBERON_0007122.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007122 * *Label* = pharyngeal pouch 1 - * *Definition* = A pharyngeal pouch that is between pharyngeal arches 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16313389[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000970] + * *Definition* = A pharyngeal pouch that is between pharyngeal arches 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16313389, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000970 ] * *Comment* = AO notes: we use adjacency relations rather than part_of, as in EHDAA2. Development notes: The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP] ## Synonyms - * 1st arch branchial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000013] - * 1st arch branchial pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000016] - * 1st arch pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000016] + * 1st arch branchial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000013 ] + * 1st arch branchial pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000016 ] + * 1st arch pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000016 ] * 1st branchial pouch - * 1st pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000555] - * first arch pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000102] + * 1st pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000555 ] + * first arch pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000102 ] * hyomandibular pouch - * pharyngeal pouches 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001128[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * visceral pouch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000102] - * first pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000970] + * pharyngeal pouches 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001128, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * visceral pouch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000102 ] + * first pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000970 ] ## Cross-references @@ -28,7 +28,7 @@ * EMAPA:16124 * SCTID:345248006 * TAO:0001128 - * UMLS:C0231068 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:First_Pharyngeal_Pouch] + * UMLS:C0231068 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:First_Pharyngeal_Pouch ] * VHOG:0000555 * VHOG:0000970 * Wikipedia:Pharyngeal_pouch_(embryology)#First_pouch @@ -44,12 +44,12 @@ ## Superclasses * [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) and [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all jawed vertebrates the first arch forms the jaw, while the second arch forms the hyoid apparatus. These two arches are separated by the first pharyngeal pouch and cleft.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005718 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007222.md b/md/UBERON/22/UBERON_0007222.md index f9ce552bef..1dabed9f16 100644 --- a/md/UBERON/22/UBERON_0007222.md +++ b/md/UBERON/22/UBERON_0007222.md @@ -6,17 +6,17 @@ ## Synonyms - * elderly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0300123] - * elderly stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0300123] - * geriatric [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0300123] - * geriatric stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0300123] + * elderly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0300123 ] + * elderly stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0300123 ] + * geriatric [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0300123 ] + * geriatric stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0300123 ] ## Cross-references * EV:0300123 * HsapDv:0000093 * NIF_Organism:birnlex_691 - * UMLS:C0001792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Elderly] + * UMLS:C0001792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Elderly ] * ncithesaurus:Elderly ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007522.md b/md/UBERON/22/UBERON_0007522.md index e5c4862bd2..e11a3c9f5c 100644 --- a/md/UBERON/22/UBERON_0007522.md +++ b/md/UBERON/22/UBERON_0007522.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007522 * *Label* = striated muscle sphincter - * *Definition* = A ring of striated muscle cells whose contraction closes the opening of the ring. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A ring of striated muscle cells whose contraction closes the opening of the ring. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [striated muscle cell](../../CL/37/CL_0000737.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007622.md b/md/UBERON/22/UBERON_0007622.md index 7a05c9ea67..084c9f453a 100644 --- a/md/UBERON/22/UBERON_0007622.md +++ b/md/UBERON/22/UBERON_0007622.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007622 * *Label* = pecten oculi - * *Definition* = a comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pecten_oculi] + * *Definition* = a comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pecten_oculi ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007722.md b/md/UBERON/22/UBERON_0007722.md index cf3a0589ca..0a9ffb6813 100644 --- a/md/UBERON/22/UBERON_0007722.md +++ b/md/UBERON/22/UBERON_0007722.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007722 * *Label* = interphalangeal joint of manus - * *Definition* = The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): 'proximal interphalangeal joints' (PIP), those between the first (also called proximal) and second (intermediate) phalanges 'distal interphalangeal joints' (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] + * *Definition* = The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): 'proximal interphalangeal joints' (PIP), those between the first (also called proximal) and second (intermediate) phalanges 'distal interphalangeal joints' (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] * *Comment* = Editor notes: consider renaming: 'finger' is ambiguous as the term in some usages excludes the thumb (we include it) ## Synonyms - * articulationes digitorum manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * articulationes interphalangeae manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * interphalangeal joint of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35285] - * interphalangeal joint of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35285[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * IP joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35285] - * articulations of the digits [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * interphalangeal articulations of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * interphalangeal joints of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] + * articulationes digitorum manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * articulationes interphalangeae manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * interphalangeal joint of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35285 ] + * interphalangeal joint of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35285, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * IP joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35285 ] + * articulations of the digits [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * interphalangeal articulations of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * interphalangeal joints of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] ## Cross-references * FMA:35285 * SCTID:303280009 - * UMLS:C0016125 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interphalangeal_Joint_of_the_Hand] + * UMLS:C0016125 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interphalangeal_Joint_of_the_Hand ] * Wikipedia:Interphalangeal_articulations_of_the_hand * ncithesaurus:Interphalangeal_Joint_of_the_Hand @@ -37,15 +37,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint](../../UBERON/58/UBERON_0006658.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0007822.md b/md/UBERON/22/UBERON_0007822.md index 64b5ff6724..df3fa8ae32 100644 --- a/md/UBERON/22/UBERON_0007822.md +++ b/md/UBERON/22/UBERON_0007822.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007822 * *Label* = vomeronasal cartilage - * *Definition* = The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vomeronasal_cartilage] + * *Definition* = The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vomeronasal_cartilage ] ## Synonyms - * Huschke's cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59514] - * Jacobson's cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59514] - * cartilago vomeronasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vomeronasal_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Huschke's cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59514 ] + * Jacobson's cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59514 ] + * cartilago vomeronasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vomeronasal_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0008322.md b/md/UBERON/22/UBERON_0008322.md index 3a4ec9a947..e3c38e465b 100644 --- a/md/UBERON/22/UBERON_0008322.md +++ b/md/UBERON/22/UBERON_0008322.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008322 * *Label* = deep artery of clitoris - * *Definition* = The deep artery of clitoris is a branch of the internal pudendal artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_artery_of_clitoris] + * *Definition* = The deep artery of clitoris is a branch of the internal pudendal artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_artery_of_clitoris ] ## Synonyms - * arteria profunda clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_artery_of_clitoris[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria profunda clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_artery_of_clitoris, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0008522.md b/md/UBERON/22/UBERON_0008522.md index 31bde35076..08fe726a49 100644 --- a/md/UBERON/22/UBERON_0008522.md +++ b/md/UBERON/22/UBERON_0008522.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008522 * *Label* = nasal muscle - * *Definition* = A muscle organ that is part of a olfactory apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a olfactory apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:73758 * SCTID:244730009 - * UMLS:C0224219 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Muscle] + * UMLS:C0224219 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Muscle ] * ncithesaurus:Nasal_Muscle ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0008622.md b/md/UBERON/22/UBERON_0008622.md index 37affd2dcb..2424b568d6 100644 --- a/md/UBERON/22/UBERON_0008622.md +++ b/md/UBERON/22/UBERON_0008622.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008622 * *Label* = scalenus anterior - * *Definition* = The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_anterior] + * *Definition* = The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_anterior ] ## Synonyms - * anterior scalene [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_anterior] - * musculus scalenus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_anterior[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * scalenus anterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_anterior] - * scalenus anticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_anterior] + * anterior scalene [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_anterior ] + * musculus scalenus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_anterior, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * scalenus anterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_anterior ] + * scalenus anticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_anterior ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0008822.md b/md/UBERON/22/UBERON_0008822.md index 1d29af1123..c907741c55 100644 --- a/md/UBERON/22/UBERON_0008822.md +++ b/md/UBERON/22/UBERON_0008822.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008822 * *Label* = posterior mediastinum - * *Definition* = The posterior mediastinum is an irregular triangular space running parallel with the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_mediastinum] + * *Definition* = The posterior mediastinum is an irregular triangular space running parallel with the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_mediastinum ] ## Synonyms - * posterior mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9840] - * mediastinum posterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_mediastinum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9840 ] + * mediastinum posterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_mediastinum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:9840 * SCTID:243957009 - * UMLS:C0230150 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Mediastinum] + * UMLS:C0230150 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Mediastinum ] * Wikipedia:Posterior_mediastinum * http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png * ncithesaurus:Posterior_Mediastinum @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0008922.md b/md/UBERON/22/UBERON_0008922.md index 47492d6dd7..52594f5518 100644 --- a/md/UBERON/22/UBERON_0008922.md +++ b/md/UBERON/22/UBERON_0008922.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008922 * *Label* = sublaminar layer S1 - * *Definition* = A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [inner nuclear layer of retina](../../UBERON/91/UBERON_0001791.md) and [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) and [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0009022.md b/md/UBERON/22/UBERON_0009022.md index f52a88bc95..1f93e17540 100644 --- a/md/UBERON/22/UBERON_0009022.md +++ b/md/UBERON/22/UBERON_0009022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009022 * *Label* = right uterine horn - * *Definition* = An uterine horn that is in the right side of a uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An uterine horn that is in the right side of a uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [uterus](../../UBERON/95/UBERON_0000995.md) and [uterine horn](../../UBERON/47/UBERON_0002247.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0009122.md b/md/UBERON/22/UBERON_0009122.md index 6c03366902..8531e307fc 100644 --- a/md/UBERON/22/UBERON_0009122.md +++ b/md/UBERON/22/UBERON_0009122.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009122 * *Label* = adenohypophyseal placode - * *Definition* = The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/books/NBK53175/] + * *Definition* = The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/books/NBK53175/ ] * *Comment* = Editor notes: consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm. Addtional notes: Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathkes pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathkes pouch, the anlage of the adenohypophysis. Rathkes pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathkes pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009) ## Synonyms - * pituitary placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001198] + * pituitary placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001198 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0009522.md b/md/UBERON/22/UBERON_0009522.md index 32e844daa4..836de7f63d 100644 --- a/md/UBERON/22/UBERON_0009522.md +++ b/md/UBERON/22/UBERON_0009522.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009522 * *Label* = lateral lingual swelling epithelium - * *Definition* = An epithelium that is part of a lateral lingual swelling. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lateral lingual swelling. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral lingual swelling](../../UBERON/57/UBERON_0006757.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0009622.md b/md/UBERON/22/UBERON_0009622.md index 75383b62ba..87aaf854a7 100644 --- a/md/UBERON/22/UBERON_0009622.md +++ b/md/UBERON/22/UBERON_0009622.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009622 * *Label* = pronephric proximal straight tubule - * *Definition* = A proximal straight tubule that is part of a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-071029-9] + * *Definition* = A proximal straight tubule that is part of a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-071029-9 ] ## Synonyms - * proximal straight tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * proximal straight tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [proximal straight tubule](../../UBERON/90/UBERON_0001290.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0009722.md b/md/UBERON/22/UBERON_0009722.md index 6a63a6ccff..4c8a347740 100644 --- a/md/UBERON/22/UBERON_0009722.md +++ b/md/UBERON/22/UBERON_0009722.md @@ -6,7 +6,7 @@ ## Synonyms - * pharyngeal arch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004621] + * pharyngeal arch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004621 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0010022.md b/md/UBERON/22/UBERON_0010022.md index 0432f78122..a691623888 100644 --- a/md/UBERON/22/UBERON_0010022.md +++ b/md/UBERON/22/UBERON_0010022.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0010222.md b/md/UBERON/22/UBERON_0010222.md index f88f4d92bf..d2ba5ce529 100644 --- a/md/UBERON/22/UBERON_0010222.md +++ b/md/UBERON/22/UBERON_0010222.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0010422.md b/md/UBERON/22/UBERON_0010422.md index 543c73de3c..dcdcf2047d 100644 --- a/md/UBERON/22/UBERON_0010422.md +++ b/md/UBERON/22/UBERON_0010422.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010422 * *Label* = primary nodular lymphoid tissue - * *Definition* = A lymphoid follicle containing naive B cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * *Definition* = A lymphoid follicle containing naive B cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] * *Comment* = Location notes: The cortex of lymph nodes, the white pulp of spleen, and mucosa associated lymphoid tissue all have these primary follicles ## Synonyms * primary lymphoid follicle - * primary lymphoid nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55223] + * primary lymphoid nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55223 ] * primary follicle ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0010522.md b/md/UBERON/22/UBERON_0010522.md index 929c3479c8..f5381f3d4f 100644 --- a/md/UBERON/22/UBERON_0010522.md +++ b/md/UBERON/22/UBERON_0010522.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010522 * *Label* = replacement element - * *Definition* = Skeletal element that forms as a replacement or substitution of another element or tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000135[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal element that forms as a replacement or substitution of another element or tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000135, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0010722.md b/md/UBERON/22/UBERON_0010722.md index c683af15c7..a7dd95f7c0 100644 --- a/md/UBERON/22/UBERON_0010722.md +++ b/md/UBERON/22/UBERON_0010722.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010722 * *Label* = accessory bone - * *Definition* = A bone which does not occur frequently in the body but is still present in a significantly large number of organisms [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_bone] + * *Definition* = A bone which does not occur frequently in the body but is still present in a significantly large number of organisms [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_bone ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010722 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011022.md b/md/UBERON/22/UBERON_0011022.md index cd4962b660..a9216577f7 100644 --- a/md/UBERON/22/UBERON_0011022.md +++ b/md/UBERON/22/UBERON_0011022.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011022 * *Label* = flexor hallucis brevis muscle - * *Definition* = The Flexor hallucis brevis arises, by a pointed tendinous process, from the medial part of the under surface of the cuboid bone, from the contiguous portion of the third cuneiform, and from the prolongation of the tendon of the Tibialis posterior which is attached to that bone. It divides in front into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. The medial portion is blended with the Abductor hallucis previous to its insertion; the lateral portion with the Adductor hallucis; the tendon of the Flexor hallucis longus lies in a groove between them; the lateral portion is sometimes described as the first Interosseous plantaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_hallucis_brevis_muscle] + * *Definition* = The Flexor hallucis brevis arises, by a pointed tendinous process, from the medial part of the under surface of the cuboid bone, from the contiguous portion of the third cuneiform, and from the prolongation of the tendon of the Tibialis posterior which is attached to that bone. It divides in front into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. The medial portion is blended with the Abductor hallucis previous to its insertion; the lateral portion with the Adductor hallucis; the tendon of the Flexor hallucis longus lies in a groove between them; the lateral portion is sometimes described as the first Interosseous plantaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_hallucis_brevis_muscle ] ## Synonyms - * flexor hallucis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37449] - * flexor hallucis brevis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_hallucis_brevis_muscle] - * m.flexor hallucis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37449] - * musculus flexor hallucis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_hallucis_brevis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * flexor hallucis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37449 ] + * flexor hallucis brevis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_hallucis_brevis_muscle ] + * m.flexor hallucis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37449 ] + * musculus flexor hallucis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_hallucis_brevis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011122.md b/md/UBERON/22/UBERON_0011122.md index 219f46191b..e6e850f603 100644 --- a/md/UBERON/22/UBERON_0011122.md +++ b/md/UBERON/22/UBERON_0011122.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011122 * *Label* = cricoarytenoid joint - * *Definition* = The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_articulation] + * *Definition* = The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_articulation ] ## Synonyms - * crico-arytenoid joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55102] - * cricoarytenoid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55102] - * crico-arytenoid joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_articulation] + * crico-arytenoid joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55102 ] + * cricoarytenoid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55102 ] + * crico-arytenoid joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_articulation ] ## Cross-references * FMA:55102 * SCTID:361945001 - * UMLS:C0225555 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricoarytenoid_Joint] + * UMLS:C0225555 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricoarytenoid_Joint ] * Wikipedia:Cricoarytenoid_articulation * http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png * ncithesaurus:Cricoarytenoid_Joint @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [arytenoid cartilage](../../UBERON/40/UBERON_0001740.md) and [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011222.md b/md/UBERON/22/UBERON_0011222.md index feab7829b8..8fc82979eb 100644 --- a/md/UBERON/22/UBERON_0011222.md +++ b/md/UBERON/22/UBERON_0011222.md @@ -7,7 +7,7 @@ ## Synonyms * intrinsic muscle of eyeball - * intrinsic ocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18808] + * intrinsic ocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18808 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscles within the eye (bulbus oculi).[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011322.md b/md/UBERON/22/UBERON_0011322.md index c42619bd65..eed9d736c2 100644 --- a/md/UBERON/22/UBERON_0011322.md +++ b/md/UBERON/22/UBERON_0011322.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011322 * *Label* = mylohyoid nerve - * *Definition* = A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_nerve] + * *Definition* = A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_nerve ] ## Synonyms - * branch of inferior alveolar nerve to mylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53247] - * mylodigastric nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53247] - * mylohyoid branch of inferior alveolar nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53247] - * nerve to mylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53247] - * nervus mylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus mylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nerve to mylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_nerve] + * branch of inferior alveolar nerve to mylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53247 ] + * mylodigastric nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53247 ] + * mylohyoid branch of inferior alveolar nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53247 ] + * nerve to mylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53247 ] + * nervus mylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus mylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nerve to mylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_nerve ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011622.md b/md/UBERON/22/UBERON_0011622.md index 1f7d3a0fc5..fee8cadbea 100644 --- a/md/UBERON/22/UBERON_0011622.md +++ b/md/UBERON/22/UBERON_0011622.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011622 * *Label* = thyrohyoid bone - * *Definition* = Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1951] + * *Definition* = Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1951 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011822.md b/md/UBERON/22/UBERON_0011822.md index 39b0bdbc7d..a9ddd1a802 100644 --- a/md/UBERON/22/UBERON_0011822.md +++ b/md/UBERON/22/UBERON_0011822.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011822 * *Label* = dense irregular connective tissue - * *Definition* = Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20109[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dense_irregular_connective_tissue] + * *Definition* = Irregular connective tissue is an irregular connective tissue, the intercellular matrix of which contains a dense irregular network of collagen and elastic fiber bundles. Examples: connective tissue of peritoneum, connective tissue of fibrous pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20109, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dense_irregular_connective_tissue ] ## Synonyms * irregular dense connective tissue - * typus irregularis (textus connectivus collagenosus compactus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20109] + * typus irregularis (textus connectivus collagenosus compactus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20109 ] ## Cross-references * FMA:20109 - * UMLS:C0738366 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Irregular_Dense_Connective_Tissue] + * UMLS:C0738366 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Irregular_Dense_Connective_Tissue ] * Wikipedia:Dense_irregular_connective_tissue * ncithesaurus:Irregular_Dense_Connective_Tissue @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tissue characterized by a thick, random arrangement of collagen and elastin fibers with very few cells. The majority of the cells are fibroblasts, but mast cells and macrophages may also be seen. It is found in the dermis, periosteum, perichondrium, capsules of organs and sheaths of nerves and muscles[NCIT] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011822 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0011922.md b/md/UBERON/22/UBERON_0011922.md index 8b2c272948..3fb3e3fc44 100644 --- a/md/UBERON/22/UBERON_0011922.md +++ b/md/UBERON/22/UBERON_0011922.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011922 * *Label* = cochlear basement membrane - * *Definition* = The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004598] + * *Definition* = The the continuous basement membrane found within the membranous labyrinth of the cochlea, known to extend from the limbus, down to the inner sulcus, across the basilar membrane, up to the external sulcus to the spiral prominence and radiating into the spiral ligament ensheathing the root cell processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004598 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basement membrane of epithelium](../../UBERON/69/UBERON_0005769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear labyrinth](../../UBERON/99/UBERON_0002499.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011922 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0012322.md b/md/UBERON/22/UBERON_0012322.md index d2b016f214..b8f0566759 100644 --- a/md/UBERON/22/UBERON_0012322.md +++ b/md/UBERON/22/UBERON_0012322.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012322 * *Label* = ascending cervical artery - * *Definition* = The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_cervical_artery] + * *Definition* = The ascending cervical artery is a small branch which arises from the inferior thyroid artery as that vessel is passing behind the carotid sheath; it runs up on the anterior tubercles of the transverse processes of the cervical vertebrC& in the interval between the Scalenus anterior and Longus capitis. To the muscles of the neck it gives twigs which anastomose with branches of the vertebral, and it sends one or two spinal branches into the vertebral canal through the intervertebral foramina to be distributed to the medulla spinalis and its membranes, and to the bodies of the vertebrC&, in the same manner as the spinal branches from the vertebral. It anastomoses with the ascending pharyngeal and occipital arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_cervical_artery ] ## Synonyms - * ascending cervical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_cervical_artery] + * ascending cervical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_cervical_artery ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012322 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0012422.md b/md/UBERON/22/UBERON_0012422.md index 8e7c387dd4..a45fe5407e 100644 --- a/md/UBERON/22/UBERON_0012422.md +++ b/md/UBERON/22/UBERON_0012422.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012422 * *Label* = secretion of crop - * *Definition* = Nutritional fluid secreted by the crop in some species[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Nutritional fluid secreted by the crop in some species[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * crop milk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * crop milk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [crop](../../UBERON/56/UBERON_0007356.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0013122.md b/md/UBERON/22/UBERON_0013122.md index 991e44a834..b854b01fa2 100644 --- a/md/UBERON/22/UBERON_0013122.md +++ b/md/UBERON/22/UBERON_0013122.md @@ -6,11 +6,11 @@ ## Synonyms - * caput phalangis (pedis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32890] - * caput phalangis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * distal end of phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32890] - * distal epiphysis of phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32890] - * head of phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32890] + * caput phalangis (pedis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32890 ] + * caput phalangis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * distal end of phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32890 ] + * distal epiphysis of phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32890 ] + * head of phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32890 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [phalanx of pes](../../UBERON/49/UBERON_0001449.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013122 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0013222.md b/md/UBERON/22/UBERON_0013222.md index b6c2a16151..4e3bb0770e 100644 --- a/md/UBERON/22/UBERON_0013222.md +++ b/md/UBERON/22/UBERON_0013222.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013222 * *Label* = otic notch - * *Definition* = Otic notches are invagination in the posterior margin of the skull roof, one behind each orbit. Such notches are found in labyrinthodonts and some of their immediate ancestors, but not their reptilian descendants. The presence or absence of the otic notches is one of the traits used to separate the amniotes from the amphibian grade tetrapods. The notches have been interpreted as part of an auditory structure, and are often shown holding a tympanum similar to those seen in modern anurans. Analysis of the columella (the stapes in amphibians and reptiles) of labyrinthodonts however indicate it did not function in transmitting low energy vibrations, thus rendering them effectively deaf to airborne sound. The otic notch instead functioned as a spiracle, at least in the early forms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_notch] + * *Definition* = Otic notches are invagination in the posterior margin of the skull roof, one behind each orbit. Such notches are found in labyrinthodonts and some of their immediate ancestors, but not their reptilian descendants. The presence or absence of the otic notches is one of the traits used to separate the amniotes from the amphibian grade tetrapods. The notches have been interpreted as part of an auditory structure, and are often shown holding a tympanum similar to those seen in modern anurans. Analysis of the columella (the stapes in amphibians and reptiles) of labyrinthodonts however indicate it did not function in transmitting low energy vibrations, thus rendering them effectively deaf to airborne sound. The otic notch instead functioned as a spiracle, at least in the early forms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_notch ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013222 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0013422.md b/md/UBERON/22/UBERON_0013422.md index 5b4fbb81c7..9c653618af 100644 --- a/md/UBERON/22/UBERON_0013422.md +++ b/md/UBERON/22/UBERON_0013422.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013422 * *Label* = infratemporal fossa - * *Definition* = The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infratemporal_fossa] + * *Definition* = The infratemporal fossa is an irregularly shaped cavity, situated below and medial to the zygomatic arch. Boundaries defined by: anteriorly, by the infratemporal surface of the maxilla and the ridge which descends from its zygomatic process posteriorly, by the articular tubercle of the temporal and the spinal angularis of the sphenoid superiorly, by the greater wing of the sphenoid below the infratemporal crest, and by the under surface of the temporal squama, containing the foramen ovale, which transmits the mandibular branch of the trigeminal nerve, and the foramen spinosum, which transmits the middle meningeal artery inferiorly, by the medial pterygoid muscle attaching to the mandible medially, by the lateral pterygoid plate laterally, by the ramus of mandible, which contains the mandibular foramen, leading to the mandibular canal through which the inferior alveolar nerve passes. This also contains the lingula, a triangular piece of bone that overlies the mandibular foramen antero-medially. Finally, the mylohyoid groove descends obliquely transmitting the mylohyoid nerve the only motor branch of the anterior division of the trigeminal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infratemporal_fossa ] ## Synonyms - * fossa infratemporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infratemporal_fossa] - * infratemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infratemporal_fossa] - * pterygomaxillary fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infratemporal_fossa] + * fossa infratemporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infratemporal_fossa ] + * infratemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infratemporal_fossa ] + * pterygomaxillary fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infratemporal_fossa ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013422 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0013522.md b/md/UBERON/22/UBERON_0013522.md index 8b1914ebb6..b0b62108a2 100644 --- a/md/UBERON/22/UBERON_0013522.md +++ b/md/UBERON/22/UBERON_0013522.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0013622.md b/md/UBERON/22/UBERON_0013622.md index f767a9c885..111c8d82d8 100644 --- a/md/UBERON/22/UBERON_0013622.md +++ b/md/UBERON/22/UBERON_0013622.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod pad](../../UBERON/48/UBERON_0012348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0014522.md b/md/UBERON/22/UBERON_0014522.md index e82f2a2ae8..cecc06bc8e 100644 --- a/md/UBERON/22/UBERON_0014522.md +++ b/md/UBERON/22/UBERON_0014522.md @@ -6,9 +6,9 @@ ## Synonyms - * dorsolateral nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * nucleus dorsalis nervi oculomotorii [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oculomotor nerve dorsolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SCTID:369237002] + * dorsolateral nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * nucleus dorsalis nervi oculomotorii [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oculomotor nerve dorsolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SCTID:369237002 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014522 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0014622.md b/md/UBERON/22/UBERON_0014622.md index 2e4b9d3fdf..f5d04bc0db 100644 --- a/md/UBERON/22/UBERON_0014622.md +++ b/md/UBERON/22/UBERON_0014622.md @@ -6,14 +6,14 @@ ## Synonyms - * apex of cervical spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1714[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * apex of cervical spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1714] + * apex of cervical spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1714, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * apex of cervical spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1714 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1714 * SCTID:174452008 - * UMLS:C0228612 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1714] + * UMLS:C0228612 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1714 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014622 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_0015022.md b/md/UBERON/22/UBERON_0015022.md index 91a6805fcc..26d6a429a5 100644 --- a/md/UBERON/22/UBERON_0015022.md +++ b/md/UBERON/22/UBERON_0015022.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015022 * *Label* = hindlimb endochondral element - * *Definition* = A hindlimb bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A hindlimb bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * hindlimb bone skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * hindlimb bone skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) + * [hindlimb bone pre-cartilage condensation](../../UBERON/86/UBERON_0010886.md)or[hindlimb bone](../../UBERON/64/UBERON_0003464.md)or[hindlimb cartilage element](../../UBERON/85/UBERON_0010885.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_1000022.md b/md/UBERON/22/UBERON_1000022.md index e2fb2da890..787e3394b4 100644 --- a/md/UBERON/22/UBERON_1000022.md +++ b/md/UBERON/22/UBERON_1000022.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000022 * *Label* = Zymbal's gland - * *Definition* = A modified sebaceous glands that are located at the base of the external ear and secrete into the auditory canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html] + * *Definition* = A modified sebaceous glands that are located at the base of the external ear and secrete into the auditory canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html ] * *Comment* = Structure notes: Zymbals glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbals glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php. Editor notes: modified sebacious gland or subtype? ## Synonyms - * Zymbal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002900] + * Zymbal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002900 ] * gland of Zymbal ## Cross-references * MA:0002900 * SCTID:105587007 - * UMLS:C0687056 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zymbal_Gland] + * UMLS:C0687056 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zymbal_Gland ] * ncithesaurus:Zymbal_Gland ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000022 + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000222.md b/md/UBERON/22/UBERON_2000222.md index fdbe344037..fb2a0fa207 100644 --- a/md/UBERON/22/UBERON_2000222.md +++ b/md/UBERON/22/UBERON_2000222.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000322.md b/md/UBERON/22/UBERON_2000322.md index 1a8d3ccef4..42833a2897 100644 --- a/md/UBERON/22/UBERON_2000322.md +++ b/md/UBERON/22/UBERON_2000322.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000422.md b/md/UBERON/22/UBERON_2000422.md index 9835bda08f..448f401153 100644 --- a/md/UBERON/22/UBERON_2000422.md +++ b/md/UBERON/22/UBERON_2000422.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000422 * *Label* = retroarticular - * *Definition* = The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000522.md b/md/UBERON/22/UBERON_2000522.md index 0b9b7aa5c6..d0160d9af5 100644 --- a/md/UBERON/22/UBERON_2000522.md +++ b/md/UBERON/22/UBERON_2000522.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000622.md b/md/UBERON/22/UBERON_2000622.md index 84f28aafcb..09cfd3d3fa 100644 --- a/md/UBERON/22/UBERON_2000622.md +++ b/md/UBERON/22/UBERON_2000622.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000622 * *Label* = barbel - * *Definition* = Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * barbels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000622[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * barble [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000622] + * barbels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000622, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * barble [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000622 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2000722.md b/md/UBERON/22/UBERON_2000722.md index 6002bee685..d37b226ef8 100644 --- a/md/UBERON/22/UBERON_2000722.md +++ b/md/UBERON/22/UBERON_2000722.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_2000922.md b/md/UBERON/22/UBERON_2000922.md index f3e3ee1405..24350c082e 100644 --- a/md/UBERON/22/UBERON_2000922.md +++ b/md/UBERON/22/UBERON_2000922.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000922[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000922, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_2001022.md b/md/UBERON/22/UBERON_2001022.md index 0a6c5a12dd..847aef66e5 100644 --- a/md/UBERON/22/UBERON_2001022.md +++ b/md/UBERON/22/UBERON_2001022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001022 * *Label* = myotome somite 9 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. immel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. immel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001222.md b/md/UBERON/22/UBERON_2001222.md index b0283f9c52..d78b75b2b1 100644 --- a/md/UBERON/22/UBERON_2001222.md +++ b/md/UBERON/22/UBERON_2001222.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001222 * *Label* = posterior copula - * *Definition* = Copula that is ventral, median, and associated with branchial arches 4 and 5 (pharyngeal arches 6-7). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Copula that is ventral, median, and associated with branchial arches 4 and 5 (pharyngeal arches 6-7). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * copula 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001222] - * posterior basibranchial copula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001222] - * posterior copula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001222] - * copula 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001222] + * copula 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001222 ] + * posterior basibranchial copula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001222 ] + * posterior copula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001222 ] + * copula 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001222 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001322.md b/md/UBERON/22/UBERON_2001322.md index d60ca57277..2d07d2eea3 100644 --- a/md/UBERON/22/UBERON_2001322.md +++ b/md/UBERON/22/UBERON_2001322.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001322 * *Label* = dorsoventral diencephalic tract - * *Definition* = A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * DVDT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001322] + * DVDT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001322 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001522.md b/md/UBERON/22/UBERON_2001522.md index 9493fbd709..301a1cf7e9 100644 --- a/md/UBERON/22/UBERON_2001522.md +++ b/md/UBERON/22/UBERON_2001522.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001522 * *Label* = hypobranchial cartilage - * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The hypobranchial cartilage usually articulates medially with a basibranchial bone or cartilage. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001622.md b/md/UBERON/22/UBERON_2001622.md index 700eb3aff0..8ad217b432 100644 --- a/md/UBERON/22/UBERON_2001622.md +++ b/md/UBERON/22/UBERON_2001622.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001622 * *Label* = odontode - * *Definition* = Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * odontodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001622[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * odontodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001622, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001722.md b/md/UBERON/22/UBERON_2001722.md index f89e1a344a..7aece02500 100644 --- a/md/UBERON/22/UBERON_2001722.md +++ b/md/UBERON/22/UBERON_2001722.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001722 * *Label* = caudal principal ray 10 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 9. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 9. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001822.md b/md/UBERON/22/UBERON_2001822.md index 4b11e7d52f..0b5bd1f6c2 100644 --- a/md/UBERON/22/UBERON_2001822.md +++ b/md/UBERON/22/UBERON_2001822.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001822 * *Label* = epibranchial 3 bone uncinate process - * *Definition* = Epibranchial uncinate process that is part of epibranchial 3 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Epibranchial uncinate process that is part of epibranchial 3 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2001922.md b/md/UBERON/22/UBERON_2001922.md index 5ba991cc1e..3bda319014 100644 --- a/md/UBERON/22/UBERON_2001922.md +++ b/md/UBERON/22/UBERON_2001922.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001922 * *Label* = inter-frontal joint - * *Definition* = Joint between the left and right frontal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint between the left and right frontal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * interfrontal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-060323-12] - * metopic suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-060323-12] + * interfrontal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-060323-12 ] + * metopic suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-060323-12 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2002022.md b/md/UBERON/22/UBERON_2002022.md index 853c7f0a38..e252bba75b 100644 --- a/md/UBERON/22/UBERON_2002022.md +++ b/md/UBERON/22/UBERON_2002022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002022 * *Label* = dermethmoid - * *Definition* = Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2002122.md b/md/UBERON/22/UBERON_2002122.md index fdf6944a93..6342968514 100644 --- a/md/UBERON/22/UBERON_2002122.md +++ b/md/UBERON/22/UBERON_2002122.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002122 * *Label* = pouch scale - * *Definition* = Scale that forms part of the posterior border of the caudal-fin organ. Pouch scales are usually hypertrophied. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scale that forms part of the posterior border of the caudal-fin organ. Pouch scales are usually hypertrophied. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: Weitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of the Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a @@ -35,7 +35,9 @@ Porto Alegre: EDIPUCRS. p 171-192. * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2002222.md b/md/UBERON/22/UBERON_2002222.md index edb886de3f..801f94e60b 100644 --- a/md/UBERON/22/UBERON_2002222.md +++ b/md/UBERON/22/UBERON_2002222.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_2005022.md b/md/UBERON/22/UBERON_2005022.md index 600903619c..78174b2c9e 100644 --- a/md/UBERON/22/UBERON_2005022.md +++ b/md/UBERON/22/UBERON_2005022.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005022 * *Label* = opercular artery - * *Definition* = The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ORA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005022] - * external carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005022] + * ORA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005022 ] + * external carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005022 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2005122.md b/md/UBERON/22/UBERON_2005122.md index a0a885f7bc..90330c7be1 100644 --- a/md/UBERON/22/UBERON_2005122.md +++ b/md/UBERON/22/UBERON_2005122.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_2005222.md b/md/UBERON/22/UBERON_2005222.md index 871b785d40..66f6a701ef 100644 --- a/md/UBERON/22/UBERON_2005222.md +++ b/md/UBERON/22/UBERON_2005222.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3000022.md b/md/UBERON/22/UBERON_3000022.md index c715525669..c6bc42ddf4 100644 --- a/md/UBERON/22/UBERON_3000022.md +++ b/md/UBERON/22/UBERON_3000022.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3000822.md b/md/UBERON/22/UBERON_3000822.md index 35e0a251f5..9bb1d228ee 100644 --- a/md/UBERON/22/UBERON_3000822.md +++ b/md/UBERON/22/UBERON_3000822.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000822 * *Label* = pars suprascapularis - * *Definition* = Superior portion of the scapula, which is thinner than the rest of the shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Superior portion of the scapula, which is thinner than the rest of the shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3000922.md b/md/UBERON/22/UBERON_3000922.md index 3cce955587..88c6cb23e9 100644 --- a/md/UBERON/22/UBERON_3000922.md +++ b/md/UBERON/22/UBERON_3000922.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000922 * *Label* = prehallux skeleton - * *Definition* = One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). It was modified by cjm in the following way: the class was relabeled from "prepollex" to "prepollex skeleton", to distinguish it from the digit-like structure which it is a part of. It was re-classified from "bone" to "subdivision of skeleton", as it may in fact be composed of multiple individual bones. TODO: definition needs reviewed, and it still requires placement under the UBERON:0012136 ! prehallux * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3010022.md b/md/UBERON/22/UBERON_3010022.md index 611f65d905..fea13c96e3 100644 --- a/md/UBERON/22/UBERON_3010022.md +++ b/md/UBERON/22/UBERON_3010022.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010022 * *Label* = M. tensor fasciae latae - * *Definition* = Originates on the ventro-lateral aspect of the ala ossis ilei and the ventral surface of the iliacus externus. Inserts on the lateral surface of the cruralis, the dorso-lateral surface of the gluteus magnus, and on the aponeurosis of the cruralis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventro-lateral aspect of the ala ossis ilei and the ventral surface of the iliacus externus. Inserts on the lateral surface of the cruralis, the dorso-lateral surface of the gluteus magnus, and on the aponeurosis of the cruralis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3010322.md b/md/UBERON/22/UBERON_3010322.md index 2dbda91df9..1db84e8b0c 100644 --- a/md/UBERON/22/UBERON_3010322.md +++ b/md/UBERON/22/UBERON_3010322.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010322 * *Label* = obsolete stem cell - * *Definition* = A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000034 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_3010722.md b/md/UBERON/22/UBERON_3010722.md index fe04f07fa9..f19946af66 100644 --- a/md/UBERON/22/UBERON_3010722.md +++ b/md/UBERON/22/UBERON_3010722.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010722 * *Label* = ramus palatinus - * *Definition* = Sensory branch of facial nerve from palatal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:CAM] + * *Definition* = Sensory branch of facial nerve from palatal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:CAM ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_3011122.md b/md/UBERON/22/UBERON_3011122.md index 8fd4de2e46..36c83fbf51 100644 --- a/md/UBERON/22/UBERON_3011122.md +++ b/md/UBERON/22/UBERON_3011122.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0009622 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2011-04-20T05:22:49Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_4000022.md b/md/UBERON/22/UBERON_4000022.md index 65bfdde248..9e42ec420f 100644 --- a/md/UBERON/22/UBERON_4000022.md +++ b/md/UBERON/22/UBERON_4000022.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000022 * *Label* = obsolete extracellular matrix - * *Definition* = Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * ECM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * ECM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0031012 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/22/UBERON_4000122.md b/md/UBERON/22/UBERON_4000122.md index 3af2ee7a3c..1c0d6497e5 100644 --- a/md/UBERON/22/UBERON_4000122.md +++ b/md/UBERON/22/UBERON_4000122.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000122 * *Label* = acellular bone tissue - * *Definition* = Mineralized bone tissue that has terminally differentiated osteoblasts but lacks osteocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Mineralized bone tissue that has terminally differentiated osteoblasts but lacks osteocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_4200022.md b/md/UBERON/22/UBERON_4200022.md index 9d5bf5dbb5..a53ab322d7 100644 --- a/md/UBERON/22/UBERON_4200022.md +++ b/md/UBERON/22/UBERON_4200022.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_4200122.md b/md/UBERON/22/UBERON_4200122.md index 7e8ce18e72..df787bd097 100644 --- a/md/UBERON/22/UBERON_4200122.md +++ b/md/UBERON/22/UBERON_4200122.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/22/UBERON_4300022.md b/md/UBERON/22/UBERON_4300022.md index 40aa0d9ee3..2677029afe 100644 --- a/md/UBERON/22/UBERON_4300022.md +++ b/md/UBERON/22/UBERON_4300022.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0000023.md b/md/UBERON/23/UBERON_0000023.md index 0c6b5ae3c5..17c51bb0cd 100644 --- a/md/UBERON/23/UBERON_0000023.md +++ b/md/UBERON/23/UBERON_0000023.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000023 * *Label* = wing - * *Definition* = Appendage that is used to produce lift for flight through the air. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wing] + * *Definition* = Appendage that is used to produce lift for flight through the air. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wing ] * *Comment* = This class is not monophyletic. See also: GO:0007629 ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = alar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0000123.md b/md/UBERON/23/UBERON_0000123.md index 2107197dc2..fd4c6eff96 100644 --- a/md/UBERON/23/UBERON_0000123.md +++ b/md/UBERON/23/UBERON_0000123.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000123 * *Label* = endoneurium - * *Definition* = The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090202] + * *Definition* = The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090202 ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:52586 * NIF_GrossAnatomy:nlx_anat_090202 * SCTID:15931004 - * UMLS:C0205888 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endoneurium] + * UMLS:C0205888 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endoneurium ] * Wikipedia:Endodeurium * ncithesaurus:Endoneurium @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus[Wikipedia:Endodeurium]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0000323.md b/md/UBERON/23/UBERON_0000323.md index 4609b819ae..e9b274b3b0 100644 --- a/md/UBERON/23/UBERON_0000323.md +++ b/md/UBERON/23/UBERON_0000323.md @@ -7,9 +7,9 @@ ## Synonyms - * fetus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000449] - * embryo late growth stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000449] - * embryo late stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000449] + * fetus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000449 ] + * embryo late growth stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000449 ] + * embryo late stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000449 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A16.378 * OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA * SCTID:83418008 - * UMLS:C0015965 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fetus] + * UMLS:C0015965 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fetus ] * ncithesaurus:Fetus ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fetal structure, which is a developmental form of a vertebrate animal at any given time point from 8 weeks of gestation to birth (or hatching). Examples: There is only one fetus[FMA:63919]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0000423.md b/md/UBERON/23/UBERON_0000423.md index c2aca0d28b..58a0fb7421 100644 --- a/md/UBERON/23/UBERON_0000423.md +++ b/md/UBERON/23/UBERON_0000423.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000423 * *Label* = eccrine sweat gland - * *Definition* = An ordinary, or simple, sweat gland; they are of the merocrine type, unbranched, coiled, tubular glands that are distributed over almost all of the body surface, and promote cooling by evaporation of their secretion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002323[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eccrine_sweat_gland] + * *Definition* = An ordinary, or simple, sweat gland; they are of the merocrine type, unbranched, coiled, tubular glands that are distributed over almost all of the body surface, and promote cooling by evaporation of their secretion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002323, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eccrine_sweat_gland ] ## Synonyms - * glandula sudorifera eccrina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eccrine_sweat_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandula sudorifera merocrina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eccrine_sweat_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eccrine gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59154] + * glandula sudorifera eccrina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eccrine_sweat_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandula sudorifera merocrina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eccrine_sweat_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eccrine gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59154 ] * merocrine sweat gland ## Cross-references @@ -19,7 +19,7 @@ * GAID:945 * MESH:A10.336.899.480 * SCTID:361699008 - * UMLS:C0013492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eccrine_Sweat_Gland] + * UMLS:C0013492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eccrine_Sweat_Gland ] * Wikipedia:Eccrine_sweat_gland * ncithesaurus:Eccrine_Sweat_Gland @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0000923.md b/md/UBERON/23/UBERON_0000923.md index acc82c8190..0b3bc7ab7a 100644 --- a/md/UBERON/23/UBERON_0000923.md +++ b/md/UBERON/23/UBERON_0000923.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000923 * *Label* = germ layer - * *Definition* = A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germ_layer] + * *Definition* = A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germ_layer ] * *Comment* = Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[UBERONREF:0000002] ## Synonyms - * germinal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Germinal_Layer] - * embryonic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69069] - * primary germ layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001704[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001122] + * germinal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Germinal_Layer ] + * embryonic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69069 ] + * primary germ layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001704, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001122 ] * embryonic germ layer * embryonic germ layers @@ -24,8 +24,8 @@ * GAID:1303 * MESH:A16.254.425 * TAO:0001122 - * UMLS:C0920502 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Embryonic_Tissue] - * UMLS:C1708239 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Germinal_Layer] + * UMLS:C0920502 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Embryonic_Tissue ] + * UMLS:C1708239 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Germinal_Layer ] * VHOG:0001223 * Wikipedia:Germ_layer * XAO:0003011 @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001023.md b/md/UBERON/23/UBERON_0001023.md index fdf22a43d2..c99e2704da 100644 --- a/md/UBERON/23/UBERON_0001023.md +++ b/md/UBERON/23/UBERON_0001023.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001023 * *Label* = obsolete dendrite - * *Definition* = The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dendrite[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dendrite, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = Made obsolete as it was equivalent to GO class ## Synonyms @@ -39,9 +39,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = TGMA:0001373 * *[consider](../../er/oboInOwl#consider.md)* = UMLS:C0011305 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Dendrite - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001023 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_0001123.md b/md/UBERON/23/UBERON_0001123.md index 44a806c944..0a6970ce5c 100644 --- a/md/UBERON/23/UBERON_0001123.md +++ b/md/UBERON/23/UBERON_0001123.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001123 * *Label* = scalenus posterior - * *Definition* = The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebr, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_posterior] + * *Definition* = The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebr, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_posterior ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * musculus scalenus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13387[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus scalenus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13387, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * posterior scalene * posterior scalene muscle * scalenus dorsalis * scalenus dorsalis muscle - * musculus scalenus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scalenus_posterior[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus scalenus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scalenus_posterior, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:13387 * MA:0002369 - * UMLS:C1710019 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scalenus_Dorsalis] + * UMLS:C1710019 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scalenus_Dorsalis ] * Wikipedia:Scalenus_posterior * http://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001223.md b/md/UBERON/23/UBERON_0001223.md index 1f5dfe0b52..37650b7a94 100644 --- a/md/UBERON/23/UBERON_0001223.md +++ b/md/UBERON/23/UBERON_0001223.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001223 * *Label* = left ureter - * *Definition* = An ureter that is part of a left side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ureter that is part of a left side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:15572 * MA:0001684 * SCTID:276340002 - * UMLS:C0227683 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Ureter] + * UMLS:C0227683 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Ureter ] * ncithesaurus:Left_Ureter ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001323.md b/md/UBERON/23/UBERON_0001323.md index 8f01fb00e4..c70ff6d7ba 100644 --- a/md/UBERON/23/UBERON_0001323.md +++ b/md/UBERON/23/UBERON_0001323.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001323 * *Label* = tibial nerve - * *Definition* = The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibial_nerve] + * *Definition* = The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibial_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * medial popliteal nerve - * n. tibialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibial_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * n. tibialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibial_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A08.800.800.720.450.760.820 * OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA * SCTID:181078002 - * UMLS:C0040186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibial_Nerve] + * UMLS:C0040186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibial_Nerve ] * Wikipedia:Tibial_nerve * http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1a/Gray828.png/200px-Gray828.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001423.md b/md/UBERON/23/UBERON_0001423.md index 2c5c891c9a..65a6b00557 100644 --- a/md/UBERON/23/UBERON_0001423.md +++ b/md/UBERON/23/UBERON_0001423.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001423 * *Label* = radius bone - * *Definition* = The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] * *Comment* = Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] ## Synonyms - * radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001357] + * radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001357 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.232.087.702 * OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA * SCTID:181940002 - * UMLS:C0034627 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Radius_Bone] + * UMLS:C0034627 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Radius_Bone ] * VSAO:0005012 * Wikipedia:Radius_(bone) * galen:Radius @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [radius endochondral element](../../UBERON/01/UBERON_0015001.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001523.md b/md/UBERON/23/UBERON_0001523.md index 80d2236457..6a0cb918af 100644 --- a/md/UBERON/23/UBERON_0001523.md +++ b/md/UBERON/23/UBERON_0001523.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001523 * *Label* = flexor digitorum profundus - * *Definition* = In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_profundus_muscle] + * *Definition* = In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_profundus_muscle ] * *Comment* = Note that in EMAPA, this is part of the leg, which is presumably a mistake ## Synonyms - * flexor digitorum profundus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_profundus_muscle] - * musculus flexor digitorum profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_profundus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * flexor digitorum profundus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_profundus_muscle ] + * musculus flexor digitorum profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_profundus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:19319 * FMA:38478 * MA:0002300 - * UMLS:C0224261 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flexor_Digitorum_Profundus] + * UMLS:C0224261 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flexor_Digitorum_Profundus ] * Wikipedia:Flexor_digitorum_profundus_muscle * http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001623.md b/md/UBERON/23/UBERON_0001623.md index 0a761603e2..40906896ce 100644 --- a/md/UBERON/23/UBERON_0001623.md +++ b/md/UBERON/23/UBERON_0001623.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001623 * *Label* = dorsal nasal artery - * *Definition* = The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nasal_artery] + * *Definition* = The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nasal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * dorsal nasal branch of ophthalmic artery * external nasal artery - * arteria dorsalis nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nasal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria dorsalis nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nasal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50000 * MA:0001945 * SCTID:369333000 - * UMLS:C0226194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Nasal_Artery] + * UMLS:C0226194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Nasal_Artery ] * Wikipedia:Dorsal_nasal_artery * http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001723.md b/md/UBERON/23/UBERON_0001723.md index e370f43917..3049a3edc1 100644 --- a/md/UBERON/23/UBERON_0001723.md +++ b/md/UBERON/23/UBERON_0001723.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001723 * *Label* = tongue - * *Definition* = A muscular organ in the floor of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:rd] + * *Definition* = A muscular organ in the floor of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:rd ] * *Comment* = editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions ## Synonyms - * glossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tongue] + * glossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tongue ] ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ * SCTID:181226008 * TAO:0005333 - * UMLS:C0040408 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tongue] + * UMLS:C0040408 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tongue ] * VHOG:0000419 * Wikipedia:Tongue * XAO:0000446 @@ -76,8 +76,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = glossal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = lingual * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001823.md b/md/UBERON/23/UBERON_0001823.md index a35500ef0d..2e38736ee8 100644 --- a/md/UBERON/23/UBERON_0001823.md +++ b/md/UBERON/23/UBERON_0001823.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001823 * *Label* = nasal cartilage - * *Definition* = One of the cartilage structures in the nose that provide form and support[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_cartilage] + * *Definition* = One of the cartilage structures in the nose that provide form and support[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_cartilage ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:59502 * MA:0001883 * SCTID:278941001 - * UMLS:C0225415 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Cartilage] + * UMLS:C0225415 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Cartilage ] * Wikipedia:Nasal_cartilage * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png * ncithesaurus:Nasal_Cartilage @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0001923.md b/md/UBERON/23/UBERON_0001923.md index ac829369a3..41839560e3 100644 --- a/md/UBERON/23/UBERON_0001923.md +++ b/md/UBERON/23/UBERON_0001923.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001923 * *Label* = central medial nucleus - * *Definition* = a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008929] + * *Definition* = a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008929 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * central medial nucleus of thalamus - * central medial nucleus thalamus (rioch 1928) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_971] + * central medial nucleus thalamus (rioch 1928) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_971 ] * central medial thalamic nucleus - * nucleus centralis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_971] - * nucleus centralis medialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_971] - * CM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_971[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * central medial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:321] - * centromedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CM] + * nucleus centralis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_971 ] + * nucleus centralis medialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_971 ] + * CM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_971, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * central medial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:321 ] + * centromedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CM ] ## Cross-references @@ -28,9 +28,9 @@ * FMA:62171 * MA:0000872 * NIF_GrossAnatomy:birnlex_971 - * NeuroNames:321 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_971] + * NeuroNames:321 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_971 ] * SCTID:279161000 - * UMLS:C0920328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_971] + * UMLS:C0920328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_971 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002023.md b/md/UBERON/23/UBERON_0002023.md index b156ba2021..f44734498d 100644 --- a/md/UBERON/23/UBERON_0002023.md +++ b/md/UBERON/23/UBERON_0002023.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002023 * *Label* = claustrum of brain - * *Definition* = one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004292[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Claustrum] + * *Definition* = one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004292, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Claustrum ] ## Synonyms - * claustrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000888] - * dorsal claustrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67440] - * dorsal portion of claustrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67440] - * claustrum (Burdach) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:252] + * claustrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000888 ] + * dorsal claustrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67440 ] + * dorsal portion of claustrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67440 ] + * claustrum (Burdach) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:252 ] ## Cross-references @@ -24,10 +24,10 @@ * FMA:67440 * MA:0000888 * NIF_GrossAnatomy:birnlex_1522 - * NeuroNames:252 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1522] + * NeuroNames:252 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1522 ] * SCTID:279410004 - * UMLS:C0008910 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1522] - * UMLS:C0008910 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Claustrum] + * UMLS:C0008910 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1522 ] + * UMLS:C0008910 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Claustrum ] * Wikipedia:Claustrum * http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg * ncithesaurus:Claustrum @@ -53,8 +53,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_40674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002123.md b/md/UBERON/23/UBERON_0002123.md index 469c873c7b..1e16b78fdd 100644 --- a/md/UBERON/23/UBERON_0002123.md +++ b/md/UBERON/23/UBERON_0002123.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002123 * *Label* = cortex of thymus - * *Definition* = Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thymus#Cortex] + * *Definition* = Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thymus#Cortex ] * *Comment* = Histologically, the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. The cortex and medulla play different roles in the development of T cells. Cells in the thymus can be divided into thymic stromal cells and cells of hematopoietic origin[WP] ## Synonyms - * thymic cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002934] - * thymus cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000767] + * thymic cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002934 ] + * thymus cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000767 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:72205 * MA:0000767 * SCTID:188262003 - * UMLS:C0229948 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymus_Cortex] + * UMLS:C0229948 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymus_Cortex ] * Wikipedia:Thymus#Cortex * ncithesaurus:Thymus_Cortex @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002223.md b/md/UBERON/23/UBERON_0002223.md index 520fc132e0..c30b056f37 100644 --- a/md/UBERON/23/UBERON_0002223.md +++ b/md/UBERON/23/UBERON_0002223.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002223 * *Label* = endolymphatic sac - * *Definition* = From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymphatic_sac] + * *Definition* = From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymphatic_sac ] * *Comment* = Editor's note: EHDAA2 structure is embryonic ## Synonyms - * saccus endolymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000551] - * saccus endolymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymphatic_sac[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * saccus endolymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000551 ] + * saccus endolymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymphatic_sac, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The blind extremity of the endolymphatic duct. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Many adult anamniotes have an endolymphatic duct that opens onto the surface of the head. In other vertebrates, it either is lost or forms a small, deeply seated endolymphatic sac.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002323.md b/md/UBERON/23/UBERON_0002323.md index c4e830c11b..79f5477c50 100644 --- a/md/UBERON/23/UBERON_0002323.md +++ b/md/UBERON/23/UBERON_0002323.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002323 * *Label* = coelemic cavity lumen - * *Definition* = The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001707] + * *Definition* = The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001707 ] * *Comment* = Taxon notes: In mammals it forms the peritoneal, pleural, and pericardial cavities. editor note: check the FMA placement here; ncit placement of body cavity here probably not correct ## Synonyms - * coelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000267] - * coelomic cavity lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000267] - * space of body compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85006] + * coelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000267 ] + * coelomic cavity lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000267 ] + * space of body compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85006 ] * ventral body cavity - * body cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001707] - * celom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001707] + * body cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001707 ] + * celom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001707 ] * coelom - * coelome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001707] - * hemocoel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005060] + * coelome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001707 ] + * hemocoel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005060 ] ## Cross-references @@ -29,7 +29,7 @@ * RETIRED_EHDAA2:0003186 * SCTID:361348008 * TAO:0001438 - * UMLS:C0333343 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cavity] + * UMLS:C0333343 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cavity ] * ZFA:0001438 * galen:BodyCavity * ncithesaurus:Cavity @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000169 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002423.md b/md/UBERON/23/UBERON_0002423.md index 7f0e024347..f340fafee8 100644 --- a/md/UBERON/23/UBERON_0002423.md +++ b/md/UBERON/23/UBERON_0002423.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002423 * *Label* = hepatobiliary system - * *Definition* = The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatobiliary_system] + * *Definition* = The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatobiliary_system ] ## Synonyms - * hepaticobiliary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061008] + * hepaticobiliary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061008 ] * liver and biliary system * liver/biliary system @@ -24,7 +24,7 @@ * MAT:0000024 * MIAA:0000024 * TAO:0000036 - * UMLS:C1711359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatobiliary_System] + * UMLS:C1711359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatobiliary_System ] * VHOG:0000294 * Wikipedia:Hepatobiliary_system * XAO:0000132 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = System responsible for the production and movement of bile[ZFIN:curator]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002523.md b/md/UBERON/23/UBERON_0002523.md index 2cb745f886..fe6549793b 100644 --- a/md/UBERON/23/UBERON_0002523.md +++ b/md/UBERON/23/UBERON_0002523.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002523 * *Label* = tunica intima - * *Definition* = The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_intima] + * *Definition* = The innermost layer of a blood vessel which is a lining of endothelial cells facing the lumen[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_intima ] ## Synonyms - * Bichat's tunic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002012] - * intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002012] - * tunica intima vasorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002012] + * Bichat's tunic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002012 ] + * intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002012 ] + * tunica intima vasorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002012 ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A07.231.330.800 * SCTID:8361002 * SCTID:87483006 - * UMLS:C0162864 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tunica_Intima] + * UMLS:C0162864 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tunica_Intima ] * Wikipedia:Tunica_intima * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted].[Wikipedia] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002623.md b/md/UBERON/23/UBERON_0002623.md index 72927b3b62..d79140baf3 100644 --- a/md/UBERON/23/UBERON_0002623.md +++ b/md/UBERON/23/UBERON_0002623.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002623 * *Label* = cerebral peduncle - * *Definition* = The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_peduncle] + * *Definition* = The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_peduncle ] ## Synonyms - * cerebral peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62394] - * peduncle of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62394] - * pedunculus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62394[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * CP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1202[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * cerebal peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:487] - * cerebral peduncle (archaic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:487] - * cerebral peduncle basal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cp] - * pedunculi cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:487[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:487[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_peduncle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cerebral peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62394 ] + * peduncle of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62394 ] + * pedunculus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62394, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * CP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1202, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * cerebal peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:487 ] + * cerebral peduncle (archaic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:487 ] + * cerebral peduncle basal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cp ] + * pedunculi cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:487, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:487, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_peduncle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,10 +28,10 @@ * EFO:0001987 * FMA:62394 * NIF_GrossAnatomy:birnlex_1202 - * NeuroNames:487 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1202] + * NeuroNames:487 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1202 ] * SCTID:362391000 - * UMLS:C0007793 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1202] - * UMLS:C0007793 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Peduncle] + * UMLS:C0007793 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1202 ] + * UMLS:C0007793 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Peduncle ] * Wikipedia:Cerebral_peduncle * http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray689.png/200px-Gray689.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002723.md b/md/UBERON/23/UBERON_0002723.md index e07b1d65e6..da01eae45d 100644 --- a/md/UBERON/23/UBERON_0002723.md +++ b/md/UBERON/23/UBERON_0002723.md @@ -6,14 +6,14 @@ ## Synonyms - * principal mammillary fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62057] - * principal mammillary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1492] - * principle mamillary fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62057] - * MPR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1492[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus mamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus mamillaris princeps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus mammillaris princeps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * principal mammillary tract (Kvlliker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:422] + * principal mammillary fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62057 ] + * principal mammillary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1492 ] + * principle mamillary fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62057 ] + * MPR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1492, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus mamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus mamillaris princeps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus mammillaris princeps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * principal mammillary tract (Kvlliker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:422 ] ## Cross-references @@ -21,8 +21,8 @@ * BAMS:pm * FMA:62057 * NIF_GrossAnatomy:birnlex_1492 - * NeuroNames:422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1492] - * UMLS:C0175331 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1492] + * NeuroNames:422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1492 ] + * UMLS:C0175331 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1492 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002823.md b/md/UBERON/23/UBERON_0002823.md index 1c32bfb724..2af12d1b7e 100644 --- a/md/UBERON/23/UBERON_0002823.md +++ b/md/UBERON/23/UBERON_0002823.md @@ -7,15 +7,15 @@ ## Synonyms - * clivus of macula lutea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2544] - * fovea centralis clivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58674] + * clivus of macula lutea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2544 ] + * fovea centralis clivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58674 ] ## Cross-references * FMA:58674 * NIF_GrossAnatomy:birnlex_2544 - * UMLS:C0929757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2544] - * UMLS:C0929760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2544] + * UMLS:C0929757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2544 ] + * UMLS:C0929760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2544 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0002923.md b/md/UBERON/23/UBERON_0002923.md index 340ec262b2..e1a5331f2e 100644 --- a/md/UBERON/23/UBERON_0002923.md +++ b/md/UBERON/23/UBERON_0002923.md @@ -6,8 +6,8 @@ ## Synonyms - * ppos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4043[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus parolfactorius posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:38[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ppos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4043, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus parolfactorius posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:38, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,8 +15,8 @@ * BAMS:pps * FMA:83745 * NIF_GrossAnatomy:birnlex_4043 - * NeuroNames:38 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4043] - * UMLS:C0262316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4043] + * NeuroNames:38 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4043 ] + * UMLS:C0262316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4043 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003023.md b/md/UBERON/23/UBERON_0003023.md index e40318fd53..6a66661340 100644 --- a/md/UBERON/23/UBERON_0003023.md +++ b/md/UBERON/23/UBERON_0003023.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003023 * *Label* = pontine tegmentum - * *Definition* = The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_tegmentum] + * *Definition* = The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_tegmentum ] ## Synonyms - * dorsal portion of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71108] - * tegmental portion of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71108] - * tegmentum of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71108] - * tegmentum pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71108[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars dorsalis pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:557[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars posterior pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:557[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tegmentum pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_tegmentum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal portion of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71108 ] + * tegmental portion of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71108 ] + * tegmentum of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71108 ] + * tegmentum pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71108, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars dorsalis pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:557, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars posterior pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:557, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tegmentum pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_tegmentum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PTg * FMA:71108 * NIF_GrossAnatomy:birnlex_923 - * NeuroNames:557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_923] + * NeuroNames:557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_923 ] * SCTID:362401009 - * UMLS:C0228426 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_923] + * UMLS:C0228426 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_923 ] * Wikipedia:Pontine_tegmentum * http://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Brainstem_Abducens.png/200px-Brainstem_Abducens.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003123.md b/md/UBERON/23/UBERON_0003123.md index 638d564230..c7ad750770 100644 --- a/md/UBERON/23/UBERON_0003123.md +++ b/md/UBERON/23/UBERON_0003123.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003123 * *Label* = aortic arch 6 - * *Definition* = the vessels formed within the sixth pair of branchial arches in embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006355] + * *Definition* = the vessels formed within the sixth pair of branchial arches in embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006355 ] * *Comment* = Development notes: the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries[http://emedicine.medscape.com/article/899609-overview] ## Synonyms - * 6th arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17005] - * AA6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005016] - * sixth aortic arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000353] + * 6th arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17005 ] + * AA6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005016 ] + * sixth aortic arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000353 ] * sixth branchial arch artery - * 6th aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17005] - * 6th branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17005] - * 6th pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17005] - * pulmonary arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * 6th aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17005 ] + * 6th branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17005 ] + * 6th pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17005 ] + * pulmonary arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aortic arch](../../UBERON/63/UBERON_0004363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 6](../../UBERON/17/UBERON_0003117.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP][Wikipedia:Aortic_arches#Arch_6]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004351 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003323.md b/md/UBERON/23/UBERON_0003323.md index c3d2a27a5d..a426ed22d6 100644 --- a/md/UBERON/23/UBERON_0003323.md +++ b/md/UBERON/23/UBERON_0003323.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003323 * *Label* = mesenchyme of upper jaw - * *Definition* = Mesenchyme that is part of a upper jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a upper jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palatoquadrate arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper jaw mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palatoquadrate arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper jaw mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003523.md b/md/UBERON/23/UBERON_0003523.md index 9226e84714..c134d9192e 100644 --- a/md/UBERON/23/UBERON_0003523.md +++ b/md/UBERON/23/UBERON_0003523.md @@ -3,38 +3,38 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003523 * *Label* = manus blood vessel - * *Definition* = A blood vessel that is part of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000618] - * proximal segment of free upper limb autopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000618 ] + * proximal segment of free upper limb autopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -50,15 +50,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003623.md b/md/UBERON/23/UBERON_0003623.md index f20c0d5aa5..9ed143d7ba 100644 --- a/md/UBERON/23/UBERON_0003623.md +++ b/md/UBERON/23/UBERON_0003623.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003623 * *Label* = manual digit 3 - * *Definition* = 3rd digit of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_finger] + * *Definition* = 3rd digit of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_finger ] ## Synonyms * 3rd digit of hand * 3rd finger - * digit 3 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17435] - * finger 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000523] - * fore digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010641] - * fore limb digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000456] - * third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24947] + * digit 3 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17435 ] + * finger 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000523 ] + * fore digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010641 ] + * fore limb digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000456 ] + * third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24947 ] * third finger - * hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * middle finger - * digitus medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_finger[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * long finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17435] + * digitus medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_finger, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * long finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17435 ] ## Cross-references @@ -29,7 +29,7 @@ * FMA:24947 * MA:0000456 * SCTID:362763005 - * UMLS:C0230393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_3] + * UMLS:C0230393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_3 ] * Wikipedia:Middle_finger * http://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 3](../../UBERON/50/UBERON_0006050.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit). * *[ambiguous_for_taxon](../../core#ambiguous/on/core#ambiguous_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003723.md b/md/UBERON/23/UBERON_0003723.md index 73b338177e..3854436f60 100644 --- a/md/UBERON/23/UBERON_0003723.md +++ b/md/UBERON/23/UBERON_0003723.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003723 * *Label* = vestibular nerve - * *Definition* = The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_nerve] + * *Definition* = The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_nerve ] ## Synonyms - * vestibular root of acoustic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53401] - * vestibular root of eighth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53401] - * vestibulocochlear VIII nerve vestibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001111] - * nervus vestibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * scarpa ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:840] - * scarpa's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:840] - * scarpas ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:840] - * vestibulocochlear nerve vestibular root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:vVIIIn] + * vestibular root of acoustic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53401 ] + * vestibular root of eighth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53401 ] + * vestibulocochlear VIII nerve vestibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001111 ] + * nervus vestibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * scarpa ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:840 ] + * scarpa's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:840 ] + * scarpas ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:840 ] + * vestibulocochlear nerve vestibular root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:vVIIIn ] ## Cross-references @@ -29,7 +29,7 @@ * NeuroNames:1389 * OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA * SCTID:362464003 - * UMLS:C0042598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibular_Nerve] + * UMLS:C0042598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibular_Nerve ] * VHOG:0001181 * Wikipedia:Vestibular_nerve * http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg @@ -54,8 +54,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003823.md b/md/UBERON/23/UBERON_0003823.md index 62dfebf879..44ecf266a4 100644 --- a/md/UBERON/23/UBERON_0003823.md +++ b/md/UBERON/23/UBERON_0003823.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003823 * *Label* = hindlimb zeugopod - * *Definition* = The middle limb segment of the pelvic free limb, between the autopod and stylopod segments. Includes as parts the hindlimb zeugopodial skeleton, which includes as parts the tibia and fibula, or their cartilage precursors, or evolutionary variants. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:curators] + * *Definition* = The middle limb segment of the pelvic free limb, between the autopod and stylopod segments. Includes as parts the hindlimb zeugopodial skeleton, which includes as parts the tibia and fibula, or their cartilage precursors, or evolutionary variants. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:curators ] * *Comment* = note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct. See obo-anatomy archives for discussion // Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here ## Synonyms - * calf of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * crus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005060] + * calf of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * crus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005060 ] * crus of hindlimb - * hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeudopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000348] - * hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeudopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000348 ] + * hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * hindlimb epipodium - * hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeudopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000348] - * hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24979] - * lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000051[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * posterior curral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * posterior leg region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * posterior part of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * posterior region of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * regio cruris posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio surae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * shank [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005060] - * sura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sural region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24984] - * zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeudopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000348 ] + * hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24979 ] + * lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000051, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * posterior curral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * posterior leg region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * posterior part of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * posterior region of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * regio cruris posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio surae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * shank [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005060 ] + * sura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sural region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24984 ] + * zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * calf - * hind epipodium [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24979[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.378.610.500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * hind epipodium [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24979, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.378.610.500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -53,7 +53,7 @@ * MESH:A01.378.610.500 * OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA * SCTID:244015008 - * UMLS:C1140621 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Leg] + * UMLS:C1140621 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Leg ] * VHOG:0000348 * VSAO:0005060 * Wikipedia:Forearm @@ -73,7 +73,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [zeugopod](../../UBERON/71/UBERON_0002471.md) ## Other Logical Axioms @@ -83,8 +83,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = sural * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0003923.md b/md/UBERON/23/UBERON_0003923.md index d687fec496..d1a2b6a067 100644 --- a/md/UBERON/23/UBERON_0003923.md +++ b/md/UBERON/23/UBERON_0003923.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003923 * *Label* = dorsal pancreatic bud - * *Definition* = pancreatic bud that gives rise to the accessory pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_bud] + * *Definition* = pancreatic bud that gives rise to the accessory pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_bud ] ## Synonyms - * pancreas dorsal primordium duct bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001385] + * pancreas dorsal primordium duct bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001385 ] * pancreas primordium dorsal bud * dorsal pancreas anlage * dorsal pancreatic anlage @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The pancreatic bud that gives rise to the accessory pancreatic duct.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004023.md b/md/UBERON/23/UBERON_0004023.md index c6a9e7156e..ea54d55376 100644 --- a/md/UBERON/23/UBERON_0004023.md +++ b/md/UBERON/23/UBERON_0004023.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004023 * *Label* = ganglionic eminence - * *Definition* = the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. The eminences are found in the ventral part of the telencephalon, where they form bulges in the ventricles. These bulges develop into the basal ganglia.[1] They also contribute significantly in building up the GABAergic cortical cell population[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004274[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ganglionic_eminence] + * *Definition* = the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. The eminences are found in the ventral part of the telencephalon, where they form bulges in the ventricles. These bulges develop into the basal ganglia.[1] They also contribute significantly in building up the GABAergic cortical cell population[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004274, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ganglionic_eminence ] ## Synonyms - * embryonic subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004274] + * embryonic subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004274 ] * embryonic/fetal subventricular zone * fetal subventricular zone - * subependymal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004274] - * GE [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * SVZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004274[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * embryonic GE [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * embryonic SVZ [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * subependymal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004274 ] + * GE [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * SVZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004274, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * embryonic GE [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * embryonic SVZ [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004123.md b/md/UBERON/23/UBERON_0004123.md index 7f5f3cf0da..dd9dbd9b10 100644 --- a/md/UBERON/23/UBERON_0004123.md +++ b/md/UBERON/23/UBERON_0004123.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004123 * *Label* = myocardial layer - * *Definition* = An organ component layer that is part of a myocardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ component layer that is part of a myocardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ component layer](../../UBERON/23/UBERON_0004923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [myocardium](../../UBERON/49/UBERON_0002349.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004223.md b/md/UBERON/23/UBERON_0004223.md index ec40bc3bbc..20a0d0316e 100644 --- a/md/UBERON/23/UBERON_0004223.md +++ b/md/UBERON/23/UBERON_0004223.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004223 * *Label* = vagina smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a vagina [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a vagina [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vaginal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004999] - * vagina smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004999] + * involuntary muscle of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vaginal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004999 ] + * vagina smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004999 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004323.md b/md/UBERON/23/UBERON_0004323.md index 5a999861b5..c3041f81b2 100644 --- a/md/UBERON/23/UBERON_0004323.md +++ b/md/UBERON/23/UBERON_0004323.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004323 * *Label* = middle phalanx of manual digit 5 - * *Definition* = A middle phalanx that is part of a hand digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a hand digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th digit of hand intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th digit of hand middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth middle phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23936] - * hand digit 5 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 5th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 5th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 5th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 5th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23936] - * middle phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5th digit of hand intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th digit of hand middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth middle phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23936 ] + * hand digit 5 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 5th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 5th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 5th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 5th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23936 ] + * middle phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004423.md b/md/UBERON/23/UBERON_0004423.md index 720573264f..8ee76aaf59 100644 --- a/md/UBERON/23/UBERON_0004423.md +++ b/md/UBERON/23/UBERON_0004423.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004423 * *Label* = proximal epiphysis of second metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of second metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42791] - * proximal end of second metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42791] + * base of second metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42791 ] + * proximal end of second metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42791 ] * proximal epiphysis of metacarpal 2 - * second metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42791] + * second metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42791 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 2](../../UBERON/46/UBERON_0003646.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004523.md b/md/UBERON/23/UBERON_0004523.md index e91b28995e..9556d49604 100644 --- a/md/UBERON/23/UBERON_0004523.md +++ b/md/UBERON/23/UBERON_0004523.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004523 * *Label* = papillary muscle of right ventricle - * *Definition* = A papillary muscle that is part of a right ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A papillary muscle that is part of a right ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [papillary muscle of heart](../../UBERON/94/UBERON_0002494.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004623.md b/md/UBERON/23/UBERON_0004623.md index e1f78a19af..8c433aa821 100644 --- a/md/UBERON/23/UBERON_0004623.md +++ b/md/UBERON/23/UBERON_0004623.md @@ -7,10 +7,10 @@ ## Synonyms - * S2 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13078] - * Second sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13078] - * Second segment of sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13078] - * second sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13078] + * S2 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13078 ] + * Second sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13078 ] + * Second segment of sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13078 ] + * second sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13078 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:13078 * MA:0001435 * SCTID:181847000 - * UMLS:C0223599 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:S2_Vertebra] + * UMLS:C0223599 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:S2_Vertebra ] * ncithesaurus:S2_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004723.md b/md/UBERON/23/UBERON_0004723.md index 7dd5fe3e10..fb28f43ca9 100644 --- a/md/UBERON/23/UBERON_0004723.md +++ b/md/UBERON/23/UBERON_0004723.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004723 * *Label* = interlobular artery - * *Definition* = the branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011316[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_arteries] + * *Definition* = the branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011316, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_arteries ] ## Synonyms - * interlobular renal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70498] - * kidney interlobular artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011316] - * arteriae corticales radiatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteriae interlobulares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortical radial arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_arteries] - * interlobular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_arteries] + * interlobular renal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70498 ] + * kidney interlobular artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011316 ] + * arteriae corticales radiatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteriae interlobulares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortical radial arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_arteries ] + * interlobular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_arteries ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:70498 * MA:0002584 * SCTID:76147008 - * UMLS:C1512856 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interlobular_Artery] + * UMLS:C1512856 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interlobular_Artery ] * Wikipedia:Interlobular_arteries * http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004823.md b/md/UBERON/23/UBERON_0004823.md index 8e5c5a2300..de621e42fa 100644 --- a/md/UBERON/23/UBERON_0004823.md +++ b/md/UBERON/23/UBERON_0004823.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004823 * *Label* = intrahepatic bile duct epithelium - * *Definition* = An epithelium that is part of a intrahepatic bile duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a intrahepatic bile duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of intrahepatic bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of intrahepatic bile duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intrahepatic bile duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of intrahepatic bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of intrahepatic bile duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intrahepatic bile duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002662 - * UMLS:C1708552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intrahepatic_Bile_Duct_Epithelium] + * UMLS:C1708552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intrahepatic_Bile_Duct_Epithelium ] * ncithesaurus:Intrahepatic_Bile_Duct_Epithelium ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intrahepatic bile duct](../../UBERON/04/UBERON_0003704.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0004923.md b/md/UBERON/23/UBERON_0004923.md index e94152bbc2..0adcf08074 100644 --- a/md/UBERON/23/UBERON_0004923.md +++ b/md/UBERON/23/UBERON_0004923.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004923 * *Label* = organ component layer - * *Definition* = Organ component which is a part of a wall of an organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82485] + * *Definition* = Organ component which is a part of a wall of an organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82485 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005023.md b/md/UBERON/23/UBERON_0005023.md index 0d21a81de4..047131a639 100644 --- a/md/UBERON/23/UBERON_0005023.md +++ b/md/UBERON/23/UBERON_0005023.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005023 * *Label* = mucosa of oropharynx - * *Definition* = A mucosa that is part of a oropharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a oropharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of oral part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oral part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oropharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oral part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oropharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of pharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of pharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of pharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of pharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oral part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oropharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of oral part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oral part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oropharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oral part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oropharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of pharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of pharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of pharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of pharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oral part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oropharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oropharynx](../../UBERON/29/UBERON_0001729.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005123.md b/md/UBERON/23/UBERON_0005123.md index 81b3e91a77..f08d24e91a 100644 --- a/md/UBERON/23/UBERON_0005123.md +++ b/md/UBERON/23/UBERON_0005123.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005123 * *Label* = metanephric prebend segment - * *Definition* = The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072228] + * *Definition* = The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072228 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [prebend segment](../../UBERON/07/UBERON_0004207.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005223.md b/md/UBERON/23/UBERON_0005223.md index 81dbe6e317..0c4ea47deb 100644 --- a/md/UBERON/23/UBERON_0005223.md +++ b/md/UBERON/23/UBERON_0005223.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005223 * *Label* = pancreas body parenchyma - * *Definition* = A parenchyma that is part of a body of pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a body of pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [body of pancreas](../../UBERON/50/UBERON_0001150.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005323.md b/md/UBERON/23/UBERON_0005323.md index fc596325fe..557386d4f8 100644 --- a/md/UBERON/23/UBERON_0005323.md +++ b/md/UBERON/23/UBERON_0005323.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005323 * *Label* = mesonephric mesenchyme - * *Definition* = Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061219] + * *Definition* = Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061219 ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005423.md b/md/UBERON/23/UBERON_0005423.md index f6e4bd952e..41516efb9d 100644 --- a/md/UBERON/23/UBERON_0005423.md +++ b/md/UBERON/23/UBERON_0005423.md @@ -8,7 +8,7 @@ * developing structure * developmental structure - * developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000019] + * developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000019 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005523.md b/md/UBERON/23/UBERON_0005523.md index 3997646110..bfc9204887 100644 --- a/md/UBERON/23/UBERON_0005523.md +++ b/md/UBERON/23/UBERON_0005523.md @@ -6,7 +6,7 @@ ## Synonyms - * r7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000949] + * r7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000949 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005623.md b/md/UBERON/23/UBERON_0005623.md index 6b26d77f1c..cc6fa010fc 100644 --- a/md/UBERON/23/UBERON_0005623.md +++ b/md/UBERON/23/UBERON_0005623.md @@ -6,8 +6,8 @@ ## Synonyms - * semilunar valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002790] - * semilunar valves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002790[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * semilunar valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002790 ] + * semilunar valves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002790, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0005723.md b/md/UBERON/23/UBERON_0005723.md index f2e00edaef..f252d27024 100644 --- a/md/UBERON/23/UBERON_0005723.md +++ b/md/UBERON/23/UBERON_0005723.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005723 * *Label* = floor plate spinal cord region - * *Definition* = A multi-tissue structure that is part of a spinal cord and is part of a floor plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a spinal cord and is part of a floor plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000787] - * floorplate spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000890] - * spinal cord floor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000787] + * floor plate spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000787 ] + * floorplate spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000890 ] + * spinal cord floor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000787 ] ## Cross-references @@ -26,15 +26,14 @@ ## Superclasses * [regional part of spinal cord](../../UBERON/48/UBERON_0001948.md) - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) - * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) * [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) * [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) * [develops from](../../RO/02/RO_0002202.md) some [floor plate of neural tube](../../UBERON/06/UBERON_0003306.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms @@ -44,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the available data for tunicates, amphioxus, and vertebrates indicate that a floorplate-like structure was already present in the proximate invertebrate ancestor of the vertebrates and that the genetic mechanisms for DV patterning of the nerve cord were also largely in place.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005247 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0006123.md b/md/UBERON/23/UBERON_0006123.md index ae238003e2..db89cf561d 100644 --- a/md/UBERON/23/UBERON_0006123.md +++ b/md/UBERON/23/UBERON_0006123.md @@ -6,12 +6,12 @@ ## Synonyms - * Diagonal band horizontal limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090303] - * Horizontal limb of the diagonal band of Broca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090303] - * hDBB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090303] - * horizontal limb of diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77611] - * horizontal limb of the diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090303] - * nucleus of the horizontal limb of the diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:HDB] + * Diagonal band horizontal limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090303 ] + * Horizontal limb of the diagonal band of Broca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090303 ] + * hDBB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090303 ] + * horizontal limb of diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77611 ] + * horizontal limb of the diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090303 ] + * nucleus of the horizontal limb of the diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:HDB ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0006223.md b/md/UBERON/23/UBERON_0006223.md index 85c8b15f0e..a8864a1269 100644 --- a/md/UBERON/23/UBERON_0006223.md +++ b/md/UBERON/23/UBERON_0006223.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal meso-esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001570] + * dorsal meso-esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001570 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0006323.md b/md/UBERON/23/UBERON_0006323.md index a198579330..94cd797d75 100644 --- a/md/UBERON/23/UBERON_0006323.md +++ b/md/UBERON/23/UBERON_0006323.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006323 * *Label* = superior rectus extraocular muscle - * *Definition* = The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_rectus_muscle] + * *Definition* = The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_rectus_muscle ] ## Synonyms - * dorsal rectus extraocular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001128] - * superior rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49035] + * dorsal rectus extraocular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001128 ] + * superior rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49035 ] * superior rectus muscle - * dorsal rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000345] - * musculus rectus superior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_rectus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000345 ] + * musculus rectus superior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_rectus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001282 * SCTID:181153003 * TAO:0000345 - * UMLS:C0582818 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Rectus_Muscle] + * UMLS:C0582818 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Rectus_Muscle ] * VHOG:0001128 * Wikipedia:Superior_rectus_muscle * ZFA:0000345 @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0006723.md b/md/UBERON/23/UBERON_0006723.md index 4c8c690a21..8ddd33aeb6 100644 --- a/md/UBERON/23/UBERON_0006723.md +++ b/md/UBERON/23/UBERON_0006723.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006723 * *Label* = cochlear modiolus - * *Definition* = The modiolus is a conical shaped central axis in the cochlea. The Modiolus consists of spongy bone and the cochlea turns approximately 2.75 times around the modiolus The spiral ganglion is situated inside the bony modiolus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Modiolus_%28cochlea%29] + * *Definition* = The modiolus is a conical shaped central axis in the cochlea. The Modiolus consists of spongy bone and the cochlea turns approximately 2.75 times around the modiolus The spiral ganglion is situated inside the bony modiolus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Modiolus_%28cochlea%29 ] ## Synonyms - * cochlea modiolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61278] - * modiolus of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61278] - * modiolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001182] - * columella cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001693] + * cochlea modiolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61278 ] + * modiolus of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61278 ] + * modiolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001182 ] + * columella cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001693 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:61278 * MA:0001182 * SCTID:361314007 - * UMLS:C0229503 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Modiolus] + * UMLS:C0229503 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Modiolus ] * Wikipedia:Modiolus_%28cochlea%29 * http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png * ncithesaurus:Modiolus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0006923.md b/md/UBERON/23/UBERON_0006923.md index 14b9133fb2..20874d8f88 100644 --- a/md/UBERON/23/UBERON_0006923.md +++ b/md/UBERON/23/UBERON_0006923.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006923 * *Label* = vagina squamous epithelium - * *Definition* = A squamous epithelium that is part of a vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A squamous epithelium that is part of a vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0001731 - * UMLS:C1711259 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vaginal_Squamous_Epithelium] + * UMLS:C1711259 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vaginal_Squamous_Epithelium ] * ncithesaurus:Vaginal_Squamous_Epithelium ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [squamous epithelium](../../UBERON/14/UBERON_0006914.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007023.md b/md/UBERON/23/UBERON_0007023.md index f4112904f0..a16dd10dcf 100644 --- a/md/UBERON/23/UBERON_0007023.md +++ b/md/UBERON/23/UBERON_0007023.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007023 * *Label* = adult organism - * *Definition* = A multi-cellular organism that existence_ends_with a post-juvenile adult stage and existence_starts_with a post-juvenile adult stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-cellular organism that existence_ends_with a post-juvenile adult stage and existence_starts_with a post-juvenile adult stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adults [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002046[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * adults [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002046, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * adult ## Cross-references @@ -16,7 +16,7 @@ * FBbt:00003004 * HAO:0000087 * TAO:0002046 - * UMLS:C0001675 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adult] + * UMLS:C0001675 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adult ] * galen:Adult * http://neurolex.org/wiki/Category:Adult_organism * ncithesaurus:Adult @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [existence_ends_with](../../core#existence/th/core#existence_ends_with.md) some [post-juvenile adult stage](../../UBERON/13/UBERON_0000113.md) and [existence_starts_with](../../core#existence/th/core#existence_starts_with.md) some [post-juvenile adult stage](../../UBERON/13/UBERON_0000113.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Whole organism that is fully grown or sexually mature.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007123.md b/md/UBERON/23/UBERON_0007123.md index 85b1c237dc..cd10d91d93 100644 --- a/md/UBERON/23/UBERON_0007123.md +++ b/md/UBERON/23/UBERON_0007123.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007123 * *Label* = pharyngeal pouch 2 - * *Definition* = A pharyngeal puch that is between the pharyngeal arches 2 and 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16313389] + * *Definition* = A pharyngeal puch that is between the pharyngeal arches 2 and 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16313389 ] * *Comment* = Development notes: Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP] ## Synonyms - * 2nd arch branchial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000060] - * 2nd arch branchial pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000061] - * 2nd arch pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000058] + * 2nd arch branchial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000060 ] + * 2nd arch branchial pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000061 ] + * 2nd arch pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000058 ] * 2nd branchial pouch - * 2nd pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000561] - * pharyngeal pouches 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001130[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * second arch pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000247] - * visceral pouch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000247] - * second pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000967] + * 2nd pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000561 ] + * pharyngeal pouches 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001130, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * second arch pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000247 ] + * visceral pouch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000247 ] + * second pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000967 ] ## Cross-references @@ -29,7 +29,7 @@ * RETIRED_EHDAA2:0000060 * SCTID:345349000 * TAO:0001130 - * UMLS:C0231069 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Second_Pharyngeal_Pouch] + * UMLS:C0231069 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Second_Pharyngeal_Pouch ] * VHOG:0000561 * VHOG:0000967 * Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch @@ -45,12 +45,12 @@ ## Superclasses * [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) and [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005715 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007223.md b/md/UBERON/23/UBERON_0007223.md index 373fd73399..aae9e7c94e 100644 --- a/md/UBERON/23/UBERON_0007223.md +++ b/md/UBERON/23/UBERON_0007223.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007223 * *Label* = osseus cochlea - * *Definition* = The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.innerbody.com/image_nerv14/nerv175.html] + * *Definition* = The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.innerbody.com/image_nerv14/nerv175.html ] * *Comment* = todo - check this. in MA, cochlea is not part of the bony labyrinth ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007623.md b/md/UBERON/23/UBERON_0007623.md index 099eec51cf..41009d0caf 100644 --- a/md/UBERON/23/UBERON_0007623.md +++ b/md/UBERON/23/UBERON_0007623.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007623 * *Label* = comb and wattle - * *Definition* = A wattle is a fleshy dewlap or caruncle hanging from various parts of the head or neck in several groups of birds, goats and other animals. In some birds the caruncle is erectile tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wattle_(anatomy)] + * *Definition* = A wattle is a fleshy dewlap or caruncle hanging from various parts of the head or neck in several groups of birds, goats and other animals. In some birds the caruncle is erectile tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wattle_(anatomy) ] ## Synonyms - * wattle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1207] - * wattles and comb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1207] + * wattle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1207 ] + * wattles and comb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1207 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007723.md b/md/UBERON/23/UBERON_0007723.md index 3798e70431..fe8fa5a3e8 100644 --- a/md/UBERON/23/UBERON_0007723.md +++ b/md/UBERON/23/UBERON_0007723.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007723 * *Label* = interphalangeal joint of manual digit 1 - * *Definition* = An interphalangeal joint of manus that is part of a manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of manus that is part of a manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: in humans, this connects proximal and distal phalanges of the thumb, so there is only a single inter-phalangeal joint - i.e. there is no distinct proximal and distal joints ## Synonyms - * interphalangeal joint of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35312] + * interphalangeal joint of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35312 ] * interphalangeal joint of hand digit 1 * interphalangeal joint of manual digit 1 * interphalangeal joint of pollex - * interphalangeal joint of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35312[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35312, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,15 +31,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of manus](../../UBERON/22/UBERON_0007722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0007823.md b/md/UBERON/23/UBERON_0007823.md index 5c07efb246..bdff988efc 100644 --- a/md/UBERON/23/UBERON_0007823.md +++ b/md/UBERON/23/UBERON_0007823.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007823 * *Label* = appendage girdle region - * *Definition* = An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that this encompasses non-skeletal tissue ## Synonyms * girdle * girdle region - * fin girdle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fin girdle region [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * limb girdle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * limb girdle region [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fin girdle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fin girdle region [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * limb girdle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * limb girdle region [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There are only two instances of appendage girdle regions per organism.[VSAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007824 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0008323.md b/md/UBERON/23/UBERON_0008323.md index f0cd80a032..c1764d6b87 100644 --- a/md/UBERON/23/UBERON_0008323.md +++ b/md/UBERON/23/UBERON_0008323.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0008523.md b/md/UBERON/23/UBERON_0008523.md index 093a72455b..96f2442a1c 100644 --- a/md/UBERON/23/UBERON_0008523.md +++ b/md/UBERON/23/UBERON_0008523.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008523 * *Label* = infrahyoid muscle - * *Definition* = The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] + * *Definition* = The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] ## Synonyms - * infrahyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] - * infrahyoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] - * infrahyoidala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] - * musculi infrahyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * strap muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] - * strap muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infrahyoid_muscles] + * infrahyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] + * infrahyoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] + * infrahyoidala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] + * musculi infrahyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * strap muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] + * strap muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infrahyoid_muscles ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0008823.md b/md/UBERON/23/UBERON_0008823.md index 7d0aa28b48..8d0d09e8fb 100644 --- a/md/UBERON/23/UBERON_0008823.md +++ b/md/UBERON/23/UBERON_0008823.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008823 * *Label* = neural tube derived brain - * *Definition* = A brain that develops_from a neural tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A brain that develops_from a neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note that a reasoner should automatically classify all the vertebrate ontology brain classes here ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [brain](../../UBERON/55/UBERON_0000955.md) and [develops from](../../RO/02/RO_0002202.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0008923.md b/md/UBERON/23/UBERON_0008923.md index 74bd258ec2..93551e0bf1 100644 --- a/md/UBERON/23/UBERON_0008923.md +++ b/md/UBERON/23/UBERON_0008923.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008923 * *Label* = sublaminar layer S2 - * *Definition* = A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md) and [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) and [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008923 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0009123.md b/md/UBERON/23/UBERON_0009123.md index 29906e44ab..c0bea87c87 100644 --- a/md/UBERON/23/UBERON_0009123.md +++ b/md/UBERON/23/UBERON_0009123.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0009523.md b/md/UBERON/23/UBERON_0009523.md index 89ecb1dd2c..c35cf52f52 100644 --- a/md/UBERON/23/UBERON_0009523.md +++ b/md/UBERON/23/UBERON_0009523.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009523 * *Label* = mesenchyme of handplate - * *Definition* = Mesenchyme that is part of a handplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a handplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * hand plate mesenchyme - * handplate mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000731] + * handplate mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000731 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [handplate](../../UBERON/75/UBERON_0006875.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0009623.md b/md/UBERON/23/UBERON_0009623.md index 17e104b9a0..463ac14430 100644 --- a/md/UBERON/23/UBERON_0009623.md +++ b/md/UBERON/23/UBERON_0009623.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009623 * *Label* = spinal nerve root - * *Definition* = The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.800.720.725] + * *Definition* = The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.800.720.725 ] * *Comment* = ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS) ## Synonyms - * root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14060] - * spinal neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14060] - * spinal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000883] + * root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14060 ] + * spinal neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14060 ] + * spinal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000883 ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:717 * MESH:A08.800.800.720.725 * SCTID:362436008 - * UMLS:C0037940 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Nerve_Root] + * UMLS:C0037940 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Nerve_Root ] * ZFA:0005578 * ncithesaurus:Spinal_Nerve_Root @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve root](../../UBERON/11/UBERON_0002211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal nerve](../../UBERON/80/UBERON_0001780.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010023.md b/md/UBERON/23/UBERON_0010023.md index 17d1b82644..40a1836a80 100644 --- a/md/UBERON/23/UBERON_0010023.md +++ b/md/UBERON/23/UBERON_0010023.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010123.md b/md/UBERON/23/UBERON_0010123.md index 8bfd83044b..902f3a2326 100644 --- a/md/UBERON/23/UBERON_0010123.md +++ b/md/UBERON/23/UBERON_0010123.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010123 * *Label* = future facial nucleus - * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a facial nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a facial nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [facial nucleus](../../UBERON/27/UBERON_0000127.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010223.md b/md/UBERON/23/UBERON_0010223.md index 8fd1c6695f..c57e04a683 100644 --- a/md/UBERON/23/UBERON_0010223.md +++ b/md/UBERON/23/UBERON_0010223.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010223 * *Label* = left pupil - * *Definition* = A pupil that is part of a left eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pupil that is part of a left eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pupil of left eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58254] + * pupil of left eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58254 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left eye](../../UBERON/48/UBERON_0004548.md) and [pupil](../../UBERON/71/UBERON_0001771.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010323.md b/md/UBERON/23/UBERON_0010323.md index 45f508f3f7..580b3783ea 100644 --- a/md/UBERON/23/UBERON_0010323.md +++ b/md/UBERON/23/UBERON_0010323.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010323 * *Label* = cranial skeletal system - * *Definition* = Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000049[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000049, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Note that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium. Editor notes: we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints) ## Synonyms * cranial skeleton * osteocranium - * cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000737[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000737, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bony structure that encases the central nervous system and the primary sense organs of sight, olfaction, hearing, and equilibrium.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010323 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010423.md b/md/UBERON/23/UBERON_0010423.md index a1aa645d24..fbdb865327 100644 --- a/md/UBERON/23/UBERON_0010423.md +++ b/md/UBERON/23/UBERON_0010423.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010423 * *Label* = primary lymphoid nodule of tonsil - * *Definition* = A primary nodular lymphoid tissue that is part of a tonsil. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A primary nodular lymphoid tissue that is part of a tonsil. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lymphoid nodule of tonsil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86018] + * lymphoid nodule of tonsil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86018 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tonsil](../../UBERON/72/UBERON_0002372.md) and [primary nodular lymphoid tissue](../../UBERON/22/UBERON_0010422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010523.md b/md/UBERON/23/UBERON_0010523.md index c7e31d4d83..92bd9c5d84 100644 --- a/md/UBERON/23/UBERON_0010523.md +++ b/md/UBERON/23/UBERON_0010523.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010523 * *Label* = microcirculatory vessel - * *Definition* = A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005251] + * *Definition* = A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005251 ] ## Synonyms - * microcirculatory vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005251[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * microcirculatory vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005251, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0010723.md b/md/UBERON/23/UBERON_0010723.md index afc2f985db..59b96b4822 100644 --- a/md/UBERON/23/UBERON_0010723.md +++ b/md/UBERON/23/UBERON_0010723.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010723 * *Label* = os vesalianum pedis - * *Definition* = an accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16291851] + * *Definition* = an accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16291851 ] ## Synonyms - * pedal vesalian bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * pedal vesalian bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * vesalian bone ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010723 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0011123.md b/md/UBERON/23/UBERON_0011123.md index 0f8ac661b2..567e1d9ff3 100644 --- a/md/UBERON/23/UBERON_0011123.md +++ b/md/UBERON/23/UBERON_0011123.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011123 * *Label* = stifle joint - * *Definition* = a complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stifle_joint] + * *Definition* = a complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stifle_joint ] ## Synonyms @@ -13,7 +13,7 @@ * MESH:A13.473.683 * SCTID:116010006 - * UMLS:C1456798 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stifle_Joint] + * UMLS:C1456798 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stifle_Joint ] * Wikipedia:Stifle_joint * ncithesaurus:Stifle_Joint @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011123 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0011623.md b/md/UBERON/23/UBERON_0011623.md index 35707e06ff..fdb6931633 100644 --- a/md/UBERON/23/UBERON_0011623.md +++ b/md/UBERON/23/UBERON_0011623.md @@ -6,8 +6,8 @@ ## Synonyms - * cornu of thyroid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55300] - * thyroid cartilage horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55300] + * cornu of thyroid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55300 ] + * thyroid cartilage horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55300 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0011823.md b/md/UBERON/23/UBERON_0011823.md index 108a9650c0..4bb9461acd 100644 --- a/md/UBERON/23/UBERON_0011823.md +++ b/md/UBERON/23/UBERON_0011823.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011823 * *Label* = dense connective tissue - * *Definition* = Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dense_connective_tissue] + * *Definition* = Dense connective tissue is mainly composed of collagen type I. Crowded between the collagen fibers are rows of fibroblasts, fiber-forming cells, that manufacture the fibers. Dense connective tissue forms strong, rope-like structures such as tendons and ligaments. Tendons attach skeletal muscles to bones; ligaments connect bones to bones at joints. Ligaments are more stretchy and contain more elastic fibers than tendons. Dense connective tissue also make up the lower layers of the skin (dermis), where it is arranged in sheets [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dense_connective_tissue ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * AAO:0000121 - * UMLS:C1511770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dense_Connective_Tissue] + * UMLS:C1511770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dense_Connective_Tissue ] * Wikipedia:Dense_connective_tissue * ncithesaurus:Dense_Connective_Tissue @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Connective tissue in which the fibrous component predominates. The cells, ground substance, and tissue fluid represent a minor component[NCIT] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011823 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0012423.md b/md/UBERON/23/UBERON_0012423.md index 20eb40a0b4..2166044439 100644 --- a/md/UBERON/23/UBERON_0012423.md +++ b/md/UBERON/23/UBERON_0012423.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012423 * *Label* = layer of microvilli - * *Definition* = A layer of microvilli, Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments[GO,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0005902[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Microvillus] + * *Definition* = A layer of microvilli, Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments[GO,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0005902, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Microvillus ] * *Comment* = AO notes: FMA class represents an individual microvillus. ## Synonyms - * microvilli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A11.284.180.565] - * microvillus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67296] + * microvilli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A11.284.180.565 ] + * microvillus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67296 ] ## Cross-references * FMA:67296 * MESH:A11.284.180.565 - * UMLS:C0026049 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Microvillus] + * UMLS:C0026049 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Microvillus ] * Wikipedia:Microvillus * ncithesaurus:Microvillus @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0013223.md b/md/UBERON/23/UBERON_0013223.md index 34519579be..d0e731e1d1 100644 --- a/md/UBERON/23/UBERON_0013223.md +++ b/md/UBERON/23/UBERON_0013223.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013223 * *Label* = alveolar gland - * *Definition* = In contrast to tubular glands, in the second main variety of gland, the secretory portion is enlarged and the lumen variously increased in size. These are termed alveolar glands (or saccular glands, or acinar glands, or acinous glands). Some sources draw a clear distinction between acinar and alveolar glands, based upon the shape of the lumen. A further complication in the case of the alveolar glands may occur in the form of still smaller saccular diverticuli growing out from the main sacculi. These are termed alveoli. The term 'tubulo-alveolar' (or 'tubulo-acinar', or 'compound tubulo-acinar', or 'compound tubulo-alveolar') is used to describe glands that start out as branched tubular, and branch further to terminate in alveoli. This type of gland is found in the salivary glands, esophagus, and mammary glands. The term 'racemose gland' is used to describe a 'compound alveolar gland' or 'compound acinar gland'. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_gland] + * *Definition* = In contrast to tubular glands, in the second main variety of gland, the secretory portion is enlarged and the lumen variously increased in size. These are termed alveolar glands (or saccular glands, or acinar glands, or acinous glands). Some sources draw a clear distinction between acinar and alveolar glands, based upon the shape of the lumen. A further complication in the case of the alveolar glands may occur in the form of still smaller saccular diverticuli growing out from the main sacculi. These are termed alveoli. The term 'tubulo-alveolar' (or 'tubulo-acinar', or 'compound tubulo-acinar', or 'compound tubulo-alveolar') is used to describe glands that start out as branched tubular, and branch further to terminate in alveoli. This type of gland is found in the salivary glands, esophagus, and mammary glands. The term 'racemose gland' is used to describe a 'compound alveolar gland' or 'compound acinar gland'. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_gland ] ## Synonyms - * acinar gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_gland] - * alveolar gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_gland] - * saccular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_gland] + * acinar gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_gland ] + * alveolar gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_gland ] + * saccular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_gland ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013223 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0013423.md b/md/UBERON/23/UBERON_0013423.md index 1d25e5d3bc..978d39b245 100644 --- a/md/UBERON/23/UBERON_0013423.md +++ b/md/UBERON/23/UBERON_0013423.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013423 * *Label* = jugal point - * *Definition* = The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jugal_point] + * *Definition* = The jugal point is the point at the anterior end of the upper border of the zygomatic arch where the masseteric and maxillary edges meet at an angle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jugal_point ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013423 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0013523.md b/md/UBERON/23/UBERON_0013523.md index 2f4eb8545b..197431a400 100644 --- a/md/UBERON/23/UBERON_0013523.md +++ b/md/UBERON/23/UBERON_0013523.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013523 * *Label* = lateral vaginal canal - * *Definition* = One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * lateral vagina - * lateral vaginae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral vaginae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [median vaginal canal](../../UBERON/24/UBERON_0013524.md) and [in_lateral_side_of](../../BSPO/26/BSPO_0000126.md) some [internal female genitalia](../../UBERON/75/UBERON_0003975.md) and [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0013623.md b/md/UBERON/23/UBERON_0013623.md index 3b2edff6c5..22185248b1 100644 --- a/md/UBERON/23/UBERON_0013623.md +++ b/md/UBERON/23/UBERON_0013623.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod pad](../../UBERON/48/UBERON_0012348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0014523.md b/md/UBERON/23/UBERON_0014523.md index f688f299c6..b444153598 100644 --- a/md/UBERON/23/UBERON_0014523.md +++ b/md/UBERON/23/UBERON_0014523.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014523 * *Label* = oculomotor division of oculomotor nuclear complex - * *Definition* = A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A division of oculomotor nuclear complex that exists in organisms with electric organs which is responsible for eye movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_70846 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014523 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0014623.md b/md/UBERON/23/UBERON_0014623.md index fcdfd14a81..7f7aa06f94 100644 --- a/md/UBERON/23/UBERON_0014623.md +++ b/md/UBERON/23/UBERON_0014623.md @@ -6,14 +6,14 @@ ## Synonyms - * substantia gelatinosa of cervical spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1723[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * substantia gelatinosa of cervical spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1723] + * substantia gelatinosa of cervical spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1723, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * substantia gelatinosa of cervical spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1723 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1723 * SCTID:174544008 - * UMLS:C0228613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1723] + * UMLS:C0228613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1723 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord dorsal horn](../../UBERON/20/UBERON_0014620.md) and [substantia gelatinosa](../../UBERON/81/UBERON_0002181.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014623 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_0015023.md b/md/UBERON/23/UBERON_0015023.md index 732b85a433..3e943f060c 100644 --- a/md/UBERON/23/UBERON_0015023.md +++ b/md/UBERON/23/UBERON_0015023.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015023 * *Label* = phalanx endochondral element - * *Definition* = A phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [phalanx cartilage element](../../UBERON/01/UBERON_0010701.md)or[phalanx pre-cartilage condensation](../../UBERON/00/UBERON_0010700.md)or[phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_1000023.md b/md/UBERON/23/UBERON_1000023.md index 9767c089a3..bb7b36c0d8 100644 --- a/md/UBERON/23/UBERON_1000023.md +++ b/md/UBERON/23/UBERON_1000023.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000023 * *Label* = spleen pulp - * *Definition* = The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Splenic_Pulp] + * *Definition* = The parenchyma of the spleen, consisting of lymphocytes and macrophages. It lies between the splenic trabecula. Red pulp is the part suffused with blood and white pulp consists of areas of lymphatic tissue where there are sleeves of lymphocytes and macrophages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Splenic_Pulp ] ## Synonyms - * malpighian corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15845] + * malpighian corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15845 ] * pulp of spleen * splenic pulp @@ -16,7 +16,7 @@ * FMA:15845 * MA:0002487 * SCTID:13515001 - * UMLS:C0229691 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Pulp] + * UMLS:C0229691 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Pulp ] * ncithesaurus:Splenic_Pulp ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000023 + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2000023.md b/md/UBERON/23/UBERON_2000023.md index 8889b52565..eefbe67106 100644 --- a/md/UBERON/23/UBERON_2000023.md +++ b/md/UBERON/23/UBERON_2000023.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000023 * *Label* = obsolete forerunner cell group - * *Definition* = A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = incorrectly generalized to teleosts so being obsoleted. 'embryonic structure' and develops_from some 'noninvoluting endocytic marginal cell cluster' ## Synonyms - * DFCs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000023] - * dorsal forerunner cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000023] - * forerunner cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000023[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * DFCs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000023 ] + * dorsal forerunner cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000023 ] + * forerunner cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000023, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,8 +32,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_2000223.md b/md/UBERON/23/UBERON_2000223.md index 3e8b180445..181b234ef9 100644 --- a/md/UBERON/23/UBERON_2000223.md +++ b/md/UBERON/23/UBERON_2000223.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000223 * *Label* = infraorbital 1 - * *Definition* = Infraorbital that is the first (anteriormost) bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Infraorbital that is the first (anteriormost) bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Suborbital and infraorbital 1 are synonymized by some authors (e.g., Cuvier), however, a suborbital bone in fishes has a different meaning than an infraorbital 1; it is a bone(s) that it is placed between the postero-dorsal infraorbitals and preopercle. A suborbital (also named postorbital by some authors) is not present in extant teleosts with the exception of Arapaima where it is occasionally present. Suborbital bones are found in some fossil basal teleosts. [G. Arratia] ## Synonyms - * lachrymal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000119] - * lacrymal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * suborbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000223] - * lachrymal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000223] - * lacrimal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000223] - * lacrymal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000223] + * lachrymal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000119 ] + * lacrymal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * suborbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000223 ] + * lachrymal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000223 ] + * lacrimal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000223 ] + * lacrymal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000223 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2000523.md b/md/UBERON/23/UBERON_2000523.md index 8f1bbb2473..06a08e5da5 100644 --- a/md/UBERON/23/UBERON_2000523.md +++ b/md/UBERON/23/UBERON_2000523.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2000623.md b/md/UBERON/23/UBERON_2000623.md index 99942de0df..932be912a5 100644 --- a/md/UBERON/23/UBERON_2000623.md +++ b/md/UBERON/23/UBERON_2000623.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000623 * *Label* = basipterygium bone - * *Definition* = basipterygium element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = basipterygium element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basipterygia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * basiptrygium ischiatique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000145] - * os pelvien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * basipterygia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * basiptrygium ischiatique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000145 ] + * os pelvien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] * pelvic plate * pubic plate - * pelvic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623] + * pelvic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623 ] ## Cross-references @@ -31,14 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basipterygium element](../../UBERON/23/UBERON_2100623.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2000723.md b/md/UBERON/23/UBERON_2000723.md index ec958c8963..c74a2554df 100644 --- a/md/UBERON/23/UBERON_2000723.md +++ b/md/UBERON/23/UBERON_2000723.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000723[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000723, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_2000923.md b/md/UBERON/23/UBERON_2000923.md index 2e2cb0bbab..739597ccaa 100644 --- a/md/UBERON/23/UBERON_2000923.md +++ b/md/UBERON/23/UBERON_2000923.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000923[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000923, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_2001023.md b/md/UBERON/23/UBERON_2001023.md index ff75bfaab1..ea378c7dcb 100644 --- a/md/UBERON/23/UBERON_2001023.md +++ b/md/UBERON/23/UBERON_2001023.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001023 * *Label* = epaxial region somite 19 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001123.md b/md/UBERON/23/UBERON_2001123.md index 3e7e37198d..ba6a603bbf 100644 --- a/md/UBERON/23/UBERON_2001123.md +++ b/md/UBERON/23/UBERON_2001123.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001123 * *Label* = obsolete median fin skeleton - * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * axial fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001123] - * unpaired fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001123] + * axial fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001123 ] + * unpaired fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001123 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000170 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_2001223.md b/md/UBERON/23/UBERON_2001223.md index b958d31838..1de053696f 100644 --- a/md/UBERON/23/UBERON_2001223.md +++ b/md/UBERON/23/UBERON_2001223.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001223 * *Label* = basibranchial 1 bone - * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). Typically develops in the anterior copula cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). Typically develops in the anterior copula cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 1 element](../../UBERON/15/UBERON_2001915.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001523.md b/md/UBERON/23/UBERON_2001523.md index b834c203ab..633a7d613d 100644 --- a/md/UBERON/23/UBERON_2001523.md +++ b/md/UBERON/23/UBERON_2001523.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001523 * *Label* = hypobranchial 4 cartilage - * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001623.md b/md/UBERON/23/UBERON_2001623.md index f7a6d2df74..6d95aca21a 100644 --- a/md/UBERON/23/UBERON_2001623.md +++ b/md/UBERON/23/UBERON_2001623.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001623 * *Label* = type 1 odontode - * *Definition* = Odontode that is attached to dermal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Odontode that is attached to dermal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Term from Schaefer & Buitrago-Suarez 2002. ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001723.md b/md/UBERON/23/UBERON_2001723.md index 6e028e5425..9eab76dcb2 100644 --- a/md/UBERON/23/UBERON_2001723.md +++ b/md/UBERON/23/UBERON_2001723.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001723 * *Label* = caudal principal ray 11 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 10. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 10. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001823.md b/md/UBERON/23/UBERON_2001823.md index 065c8ff0f2..8e1b2c99ab 100644 --- a/md/UBERON/23/UBERON_2001823.md +++ b/md/UBERON/23/UBERON_2001823.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001823 * *Label* = epibranchial 4 bone uncinate process - * *Definition* = Epibranchial uncinate process that is part of epibranchial 4 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Epibranchial uncinate process that is part of epibranchial 4 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2001923.md b/md/UBERON/23/UBERON_2001923.md index e5f2f9735e..643a883c32 100644 --- a/md/UBERON/23/UBERON_2001923.md +++ b/md/UBERON/23/UBERON_2001923.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001923 * *Label* = aortic canal - * *Definition* = Canal that houses the dorsal aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Canal that houses the dorsal aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2002023.md b/md/UBERON/23/UBERON_2002023.md index 830f8a98bb..49ffc5a8c9 100644 --- a/md/UBERON/23/UBERON_2002023.md +++ b/md/UBERON/23/UBERON_2002023.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002023 * *Label* = second preethmoid - * *Definition* = Endochondral bone found between the preethmoid and maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone found between the preethmoid and maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2002123.md b/md/UBERON/23/UBERON_2002123.md index ce86490e9c..40395786c6 100644 --- a/md/UBERON/23/UBERON_2002123.md +++ b/md/UBERON/23/UBERON_2002123.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2002223.md b/md/UBERON/23/UBERON_2002223.md index f188dad399..61814d8f21 100644 --- a/md/UBERON/23/UBERON_2002223.md +++ b/md/UBERON/23/UBERON_2002223.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2005223.md b/md/UBERON/23/UBERON_2005223.md index 2e25c08222..bf049d1c36 100644 --- a/md/UBERON/23/UBERON_2005223.md +++ b/md/UBERON/23/UBERON_2005223.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2007023.md b/md/UBERON/23/UBERON_2007023.md index e72602d193..bcee22b79d 100644 --- a/md/UBERON/23/UBERON_2007023.md +++ b/md/UBERON/23/UBERON_2007023.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2100623.md b/md/UBERON/23/UBERON_2100623.md index 61583d223e..6464a7830e 100644 --- a/md/UBERON/23/UBERON_2100623.md +++ b/md/UBERON/23/UBERON_2100623.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100623 * *Label* = basipterygium element - * *Definition* = Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basipterygia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * basipterygia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] * basipterygium - * basiptrygium ischiatique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000145] - * os pelvien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * pelvic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623] + * basiptrygium ischiatique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000145 ] + * os pelvien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * pelvic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623 ] * pelvic plate * pubic plate @@ -36,7 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_2200623.md b/md/UBERON/23/UBERON_2200623.md index 338214852e..b187b340ae 100644 --- a/md/UBERON/23/UBERON_2200623.md +++ b/md/UBERON/23/UBERON_2200623.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200623 * *Label* = obsolete basipterygium cartilage - * *Definition* = basipterygium element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = basipterygium element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basipterygia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * basiptrygium ischiatique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000145] - * os pelvien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * basipterygia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * basiptrygium ischiatique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000145 ] + * os pelvien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] * pelvic plate * pubic plate - * pelvic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000623] + * pelvic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000623 ] ## Cross-references @@ -31,8 +31,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_3000323.md b/md/UBERON/23/UBERON_3000323.md index c2130cc53d..4c73949185 100644 --- a/md/UBERON/23/UBERON_3000323.md +++ b/md/UBERON/23/UBERON_3000323.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000323 * *Label* = nasopremaxilla - * *Definition* = A compound bone consisting of premaxilla, nasal and sometimes septomaxilla in adult members of Caeciliidae and Typhlonectidae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A compound bone consisting of premaxilla, nasal and sometimes septomaxilla in adult members of Caeciliidae and Typhlonectidae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_3000523.md b/md/UBERON/23/UBERON_3000523.md index a2edef9a12..9bd67bb05a 100644 --- a/md/UBERON/23/UBERON_3000523.md +++ b/md/UBERON/23/UBERON_3000523.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000523 * *Label* = pterygoid process of palatoquadrate - * *Definition* = Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_3000823.md b/md/UBERON/23/UBERON_3000823.md index 9650646207..dc3776420b 100644 --- a/md/UBERON/23/UBERON_3000823.md +++ b/md/UBERON/23/UBERON_3000823.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000823 * *Label* = sinus interglenoidalis - * *Definition* = Notch or indentation between the pars glenoidalis and pars acromialis of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Notch or indentation between the pars glenoidalis and pars acromialis of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_3010123.md b/md/UBERON/23/UBERON_3010123.md index 6853405e11..a00a471985 100644 --- a/md/UBERON/23/UBERON_3010123.md +++ b/md/UBERON/23/UBERON_3010123.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_3010323.md b/md/UBERON/23/UBERON_3010323.md index e1d7491f52..3c78d54619 100644 --- a/md/UBERON/23/UBERON_3010323.md +++ b/md/UBERON/23/UBERON_3010323.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010323 * *Label* = obsolete hematopoietic stem cell - * *Definition* = A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] * *Comment* = false ## Synonyms - * HSC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010323] + * HSC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010323 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000037 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/23/UBERON_3010423.md b/md/UBERON/23/UBERON_3010423.md index 606e299e96..9cf7c52c01 100644 --- a/md/UBERON/23/UBERON_3010423.md +++ b/md/UBERON/23/UBERON_3010423.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_3010523.md b/md/UBERON/23/UBERON_3010523.md index aff2f0e8cd..ef542fa624 100644 --- a/md/UBERON/23/UBERON_3010523.md +++ b/md/UBERON/23/UBERON_3010523.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010523 * *Label* = M. plantaris longus - * *Definition* = Originates by two heads, one from the dorso-distal border of the aponeurosis covering the knee and the other from two tendinous branches along the medial border of the knee joint. Inserts by a thick, broad tendon to form the aponeurosis plantaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates by two heads, one from the dorso-distal border of the aponeurosis covering the knee and the other from two tendinous branches along the medial border of the knee joint. Inserts by a thick, broad tendon to form the aponeurosis plantaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_4000123.md b/md/UBERON/23/UBERON_4000123.md index ad1433d6e4..38de94712d 100644 --- a/md/UBERON/23/UBERON_4000123.md +++ b/md/UBERON/23/UBERON_4000123.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000123 * *Label* = odontode tissue - * *Definition* = Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Skeletal tissue that is avascular tubular mineralized matrix, primarily made of dentine that is deposited by odontoblasts that are excluded from the matrix; develops from pre-dentine tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * dental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * dental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_4200023.md b/md/UBERON/23/UBERON_4200023.md index 542d7c6eff..6c8e262e0d 100644 --- a/md/UBERON/23/UBERON_4200023.md +++ b/md/UBERON/23/UBERON_4200023.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_4200123.md b/md/UBERON/23/UBERON_4200123.md index ead3f31de5..2d708e2007 100644 --- a/md/UBERON/23/UBERON_4200123.md +++ b/md/UBERON/23/UBERON_4200123.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/23/UBERON_4300023.md b/md/UBERON/23/UBERON_4300023.md index ca2101e5b3..e7c2c3c0ca 100644 --- a/md/UBERON/23/UBERON_4300023.md +++ b/md/UBERON/23/UBERON_4300023.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300023 * *Label* = interolateral plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms - * IL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * IL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0000024.md b/md/UBERON/24/UBERON_0000024.md index 4aa42fc4d0..55f91fff19 100644 --- a/md/UBERON/24/UBERON_0000024.md +++ b/md/UBERON/24/UBERON_0000024.md @@ -8,7 +8,7 @@ ## Synonyms - * wing wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0000124.md b/md/UBERON/24/UBERON_0000124.md index da8a0913aa..70ebb4b78a 100644 --- a/md/UBERON/24/UBERON_0000124.md +++ b/md/UBERON/24/UBERON_0000124.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000124 * *Label* = epineurium - * *Definition* = A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090203] + * *Definition* = A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090203 ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:12234 * NIF_GrossAnatomy:nlx_anat_090203 * SCTID:64482002 - * UMLS:C0205889 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epineurium] + * UMLS:C0205889 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epineurium ] * Wikipedia:Epineurium * http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues[Wikipedia:Epineurium]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0000424.md b/md/UBERON/24/UBERON_0000424.md index ce447bad2f..36215e8692 100644 --- a/md/UBERON/24/UBERON_0000424.md +++ b/md/UBERON/24/UBERON_0000424.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000424 * *Label* = gastric pit - * *Definition* = Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_pits] + * *Definition* = Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_pits ] ## Synonyms - * foveolae gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76583[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * gastric foveola [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62947] - * foveola gastrica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002364] - * foveolae gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_pits[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * foveolae gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76583, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * gastric foveola [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62947 ] + * foveola gastrica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002364 ] + * foveolae gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_pits, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0002364 * FMA:62947 * SCTID:268426007 - * UMLS:C0227203 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Pit] + * UMLS:C0227203 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Pit ] * Wikipedia:Gastric_pits * http://upload.wikimedia.org/wikipedia/commons/7/73/Illu_stomach_layers.jpg * ncithesaurus:Gastric_Pit @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000425 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0000924.md b/md/UBERON/24/UBERON_0000924.md index 66bf2bd3c7..3653558d6b 100644 --- a/md/UBERON/24/UBERON_0000924.md +++ b/md/UBERON/24/UBERON_0000924.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000924 * *Label* = ectoderm - * *Definition* = Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ectoderm] + * *Definition* = Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ectoderm ] ## Synonyms - * embryonic ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000153] + * embryonic ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000153 ] ## Cross-references @@ -28,7 +28,7 @@ * MIAA:0000173 * SCTID:362851007 * TAO:0000016 - * UMLS:C0013574 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ectoderm] + * UMLS:C0013574 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ectoderm ] * VHOG:0000153 * Wikipedia:Ectoderm * XAO:0000001 @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ectodermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001024.md b/md/UBERON/24/UBERON_0001024.md index c88f6a2856..48005387c2 100644 --- a/md/UBERON/24/UBERON_0001024.md +++ b/md/UBERON/24/UBERON_0001024.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001024 * *Label* = obsolete neurite - * *Definition* = One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurite[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurite, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = Made obsolete as it was equivalent to GO class ## Synonyms @@ -34,9 +34,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = GO:0043005 * *[consider](../../er/oboInOwl#consider.md)* = MESH:A08.663.256.500 * *[consider](../../er/oboInOwl#consider.md)* = NIF_Subcellular:sao-867568886 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001024 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_0001224.md b/md/UBERON/24/UBERON_0001224.md index 18f96ce2c0..63d553355e 100644 --- a/md/UBERON/24/UBERON_0001224.md +++ b/md/UBERON/24/UBERON_0001224.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001224 * *Label* = renal pelvis - * *Definition* = funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004194[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pelvis] + * *Definition* = funnel shaped proximal portion of the ureter that is formed by convergence of the major calices [MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004194, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pelvis ] * *Comment* = In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter ## Synonyms * kidney pelvis * pelvis of ureter - * p. renallis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_pelvis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyelum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004194] + * p. renallis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_pelvis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyelum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004194 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0000374 * MESH:A05.810.453.537 * SCTID:362221007 - * UMLS:C0227666 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Pelvis] + * UMLS:C0227666 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Pelvis ] * Wikipedia:Renal_pelvis * galen:RenalPelvis * http://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001324.md b/md/UBERON/24/UBERON_0001324.md index 7753c7ed00..1a989eff6a 100644 --- a/md/UBERON/24/UBERON_0001324.md +++ b/md/UBERON/24/UBERON_0001324.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001324 * *Label* = common fibular nerve - * *Definition* = a nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]. The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronus longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011211[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_fibular_nerve] + * *Definition* = a nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]. The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronus longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011211, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_fibular_nerve ] ## Synonyms * common peroneal nerve - * extrernal peroneal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011211] - * lateral popliteal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011211] - * nervus peroneus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19039[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extrernal peroneal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011211 ] + * lateral popliteal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011211 ] + * nervus peroneus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19039, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * peroneal nerve - * n. fibularis communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_fibular_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * n. peroneus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_fibular_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus fibularis communis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * n. fibularis communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_fibular_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * n. peroneus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_fibular_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus fibularis communis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A08.800.800.720.450.760.640 * OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA * SCTID:181077007 - * UMLS:C0031173 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peroneal_Nerve] + * UMLS:C0031173 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peroneal_Nerve ] * Wikipedia:Common_fibular_nerve * http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png * ncithesaurus:Peroneal_Nerve @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001424.md b/md/UBERON/24/UBERON_0001424.md index 9a45354d4d..24d15c72c7 100644 --- a/md/UBERON/24/UBERON_0001424.md +++ b/md/UBERON/24/UBERON_0001424.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001424 * *Label* = ulna - * *Definition* = The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] * *Comment* = The corresponding bone in the posterior fin/limb is the fibula. ## Synonyms @@ -20,7 +20,7 @@ * MESH:A02.835.232.087.911 * OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA * SCTID:181948009 - * UMLS:C0041600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ulna] + * UMLS:C0041600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ulna ] * VSAO:0005013 * Wikipedia:Ulna * galen:Ulna @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [ulna endochondral element](../../UBERON/03/UBERON_0015003.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ulnar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001524.md b/md/UBERON/24/UBERON_0001524.md index 41ae0b64b3..4b8d9be0ea 100644 --- a/md/UBERON/24/UBERON_0001524.md +++ b/md/UBERON/24/UBERON_0001524.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001524 * *Label* = extensor carpi radialis longus muscle - * *Definition* = Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_carpi_radialis_longus_muscle] + * *Definition* = Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_carpi_radialis_longus_muscle ] ## Synonyms - * extensor carpi radialis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002291] - * musculus extensor carpi radialis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_carpi_radialis_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extensor carpi radialis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002291 ] + * musculus extensor carpi radialis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_carpi_radialis_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:38494 * MA:0002291 * SCTID:244990000 - * UMLS:C0224266 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Carpi_Radialis_Longus] + * UMLS:C0224266 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Carpi_Radialis_Longus ] * Wikipedia:Extensor_carpi_radialis_longus_muscle * http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001624.md b/md/UBERON/24/UBERON_0001624.md index b20205f03b..15fb4482c2 100644 --- a/md/UBERON/24/UBERON_0001624.md +++ b/md/UBERON/24/UBERON_0001624.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001624 * *Label* = anterior cerebral artery - * *Definition* = One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cerebral_artery] + * *Definition* = One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cerebral_artery ] ## Synonyms - * arteria cerebri anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cerebral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria cerebri anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cerebral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.228.100 * OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA * SCTID:181309000 - * UMLS:C0149561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Cerebral_Artery] + * UMLS:C0149561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Cerebral_Artery ] * Wikipedia:Anterior_cerebral_artery * http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001724.md b/md/UBERON/24/UBERON_0001724.md index ff9c3d7a41..1fb7524453 100644 --- a/md/UBERON/24/UBERON_0001724.md +++ b/md/UBERON/24/UBERON_0001724.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001724 * *Label* = sphenoidal sinus - * *Definition* = One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.531.621.827[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoidal_sinus] + * *Definition* = One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.531.621.827, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoidal_sinus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * sphenoid sinus - * sinus sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoidal_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoidal_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A04.531.621.827 * OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA * SCTID:181207000 - * UMLS:C0037885 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphenoid_Sinus] + * UMLS:C0037885 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphenoid_Sinus ] * Wikipedia:Sphenoidal_sinus * http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray856.png/200px-Gray856.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001824.md b/md/UBERON/24/UBERON_0001824.md index 7d6ff49883..02cfe532d1 100644 --- a/md/UBERON/24/UBERON_0001824.md +++ b/md/UBERON/24/UBERON_0001824.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001824 * *Label* = mucosa of larynx - * *Definition* = the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002261] + * *Definition* = the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002261 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * laryngeal mucosa * larynx mucosa - * larynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * larynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * larynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * larynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * larynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * larynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of larynx - * organ mucosa of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa laryngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59662[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organ mucosa of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa laryngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59662, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0001766 * MESH:A04.329.597 * SCTID:361940006 - * UMLS:C0023053 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Mucosa] + * UMLS:C0023053 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Mucosa ] * ncithesaurus:Laryngeal_Mucosa ## Subsets @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001824 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0001924.md b/md/UBERON/24/UBERON_0001924.md index ba47fb5d48..4add527358 100644 --- a/md/UBERON/24/UBERON_0001924.md +++ b/md/UBERON/24/UBERON_0001924.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001924 * *Label* = paracentral nucleus - * *Definition* = one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008928] + * *Definition* = one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008928 ] * *Comment* = todo - relationships ## Synonyms - * nucleus centralis lateralis superior (kusama) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_981] - * nucleus paracentral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_981] - * nucleus paracentral thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_981] - * nucleus paracentralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62172[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus centralis lateralis superior (kusama) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_981 ] + * nucleus paracentral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_981 ] + * nucleus paracentral thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_981 ] + * nucleus paracentralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62172, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * paracentral nucleus of thalamus - * paracentral nucleus thalamus (gurdjian 1927) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_981] + * paracentral nucleus thalamus (gurdjian 1927) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_981 ] * paracentral thalamic nucleus - * PC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_981[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus paracentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:322[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paracentral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:322] + * PC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_981, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus paracentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:322, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paracentral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:322 ] ## Cross-references @@ -31,9 +31,9 @@ * FMA:62172 * MA:0000873 * NIF_GrossAnatomy:birnlex_981 - * NeuroNames:322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_981] + * NeuroNames:322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_981 ] * SCTID:279152000 - * UMLS:C0228354 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_981] + * UMLS:C0228354 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_981 ] ## Subsets @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002024.md b/md/UBERON/24/UBERON_0002024.md index 2bf3fbe3ba..0c858dd3fd 100644 --- a/md/UBERON/24/UBERON_0002024.md +++ b/md/UBERON/24/UBERON_0002024.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002024 * *Label* = internal carotid nerve plexus - * *Definition* = The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_carotid_nerve_plexus] + * *Definition* = The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_carotid_nerve_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * internal carotid plexus - * plexus caroticus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67533[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus caroticus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67533, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:67533 * MA:0001162 * SCTID:280509006 - * UMLS:C0459526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Carotid_Nerve_Plexus] + * UMLS:C0459526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Carotid_Nerve_Plexus ] * Wikipedia:Internal_carotid_nerve_plexus * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray840.png/200px-Gray840.png * ncithesaurus:Internal_Carotid_Nerve_Plexus @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002124.md b/md/UBERON/24/UBERON_0002124.md index 8a7a4b0d4d..a13387a03a 100644 --- a/md/UBERON/24/UBERON_0002124.md +++ b/md/UBERON/24/UBERON_0002124.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002124 * *Label* = medulla of thymus - * *Definition* = Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thymus#Medulla] + * *Definition* = Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thymus#Medulla ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * medulla of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * medulla of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * thymus medulla ## Cross-references @@ -19,7 +19,7 @@ * FMA:72206 * MA:0000771 * SCTID:188344009 - * UMLS:C0229949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymus_Medulla] + * UMLS:C0229949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymus_Medulla ] * Wikipedia:Thymus#Medulla * ncithesaurus:Thymus_Medulla @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002224.md b/md/UBERON/24/UBERON_0002224.md index a436bc2b22..6c3df8963b 100644 --- a/md/UBERON/24/UBERON_0002224.md +++ b/md/UBERON/24/UBERON_0002224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002224 * *Label* = thoracic cavity - * *Definition* = Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7565[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_cavity] + * *Definition* = Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7565, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_cavity ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -12,8 +12,8 @@ * cavity of thorax * chest cavity * pectoral cavity - * space of thoracic compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7565] - * cavitas thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * space of thoracic compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7565 ] + * cavitas thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg * OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA * SCTID:243949006 - * UMLS:C0230139 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Cavity] + * UMLS:C0230139 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Cavity ] * Wikipedia:Thoracic_cavity * http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002324.md b/md/UBERON/24/UBERON_0002324.md index 79c498c7fb..1f16699ad5 100644 --- a/md/UBERON/24/UBERON_0002324.md +++ b/md/UBERON/24/UBERON_0002324.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002324 * *Label* = muscle of back - * *Definition* = A muscle organ that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * back muscle - * back muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * back muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002424.md b/md/UBERON/24/UBERON_0002424.md index ceb3f676bb..f2cdd2db8b 100644 --- a/md/UBERON/24/UBERON_0002424.md +++ b/md/UBERON/24/UBERON_0002424.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002424 * *Label* = oral epithelium - * *Definition* = Epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Epithelium that is part of the mouth and lines the oral cavity, typically stratified squamous, and may be para-, ortho- or non- keratinized. Primary barrier between oral environment and deeper tissues [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor note: consider including separate class for developmental structure (adult human is stratified; in EHDAA2 is unilaminar). Development notes: the avian oral epithelium has the developmental capacity to initiate tooth developmental programs with underlying grafts of non-avian oral ectomesenchyme [PMID:16488870] ## Synonyms - * epithelium of mucosa of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:265152] - * epithelium of oral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:265152] + * epithelium of mucosa of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:265152 ] + * epithelium of oral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:265152 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:265152 * MA:0000344 * TAO:0000816 - * UMLS:C1709332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oral_Cavity_Epithelium] + * UMLS:C1709332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oral_Cavity_Epithelium ] * VHOG:0000187 * XAO:0003201 * ZFA:0000816 @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mouth mucosa](../../UBERON/29/UBERON_0003729.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds[ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002524.md b/md/UBERON/24/UBERON_0002524.md index 82ca9227de..daf1a5512e 100644 --- a/md/UBERON/24/UBERON_0002524.md +++ b/md/UBERON/24/UBERON_0002524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002524 * *Label* = mediastinal lymph node - * *Definition* = A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] + * *Definition* = A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax ] ## Synonyms @@ -15,7 +15,7 @@ * FMA:12774 * MA:0002877 * SCTID:181760002 - * UMLS:C0588055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mediastinal_Lymph_Node] + * UMLS:C0588055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mediastinal_Lymph_Node ] * Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax * ncithesaurus:Mediastinal_Lymph_Node @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002624.md b/md/UBERON/24/UBERON_0002624.md index 5c946811ed..9e9017d0f8 100644 --- a/md/UBERON/24/UBERON_0002624.md +++ b/md/UBERON/24/UBERON_0002624.md @@ -6,9 +6,9 @@ ## Synonyms - * inferior frontal gyrus, orbital part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61982] - * pars orbitalis gyri frontalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1207] - * brodmann's area 36 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2410] + * inferior frontal gyrus, orbital part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61982 ] + * pars orbitalis gyri frontalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1207 ] + * brodmann's area 36 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2410 ] ## Cross-references @@ -16,9 +16,9 @@ * BAMS:OrIFG * FMA:61982 * NIF_GrossAnatomy:birnlex_1207 - * NeuroNames:2410 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1207] - * UMLS:C0262300 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1207] - * UMLS:C0262300 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus] + * NeuroNames:2410 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1207 ] + * UMLS:C0262300 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1207 ] + * UMLS:C0262300 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus ] * ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002724.md b/md/UBERON/24/UBERON_0002724.md index eb113d5172..5fd2026cf1 100644 --- a/md/UBERON/24/UBERON_0002724.md +++ b/md/UBERON/24/UBERON_0002724.md @@ -6,22 +6,22 @@ ## Synonyms - * angulus gyri olfactorii lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75266] - * gyrus ambiens (noback) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1493] - * insula limen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75266] - * limen insulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1493] - * LMI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1493[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * limen insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:50] - * limen of the insula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:50] + * angulus gyri olfactorii lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75266 ] + * gyrus ambiens (noback) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1493 ] + * insula limen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75266 ] + * limen insulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1493 ] + * LMI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1493, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * limen insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:50 ] + * limen of the insula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:50 ] ## Cross-references * BAMS:lmi * FMA:75266 * NIF_GrossAnatomy:birnlex_1493 - * NeuroNames:50 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1493] + * NeuroNames:50 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1493 ] * SCTID:369215009 - * UMLS:C0228263 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1493] + * UMLS:C0228263 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1493 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002824.md b/md/UBERON/24/UBERON_0002824.md index f5d087a01f..1da3daa13f 100644 --- a/md/UBERON/24/UBERON_0002824.md +++ b/md/UBERON/24/UBERON_0002824.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002824 * *Label* = vestibular ganglion - * *Definition* = The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scarpa%27s_ganglion] + * *Definition* = The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scarpa%27s_ganglion ] ## Synonyms - * Scarpa's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53435] - * vestibulocochlear VIII ganglion vestibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001086] + * Scarpa's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53435 ] + * vestibulocochlear VIII ganglion vestibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001086 ] * vestibulocochlear component - * nucleus nervi oculomotorii, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:495[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus nervi oculomotorii, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:495, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,12 +19,12 @@ * FMA:53435 * MA:0001086 * NIF_GrossAnatomy:birnlex_2549 - * NeuroNames:495 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2549] + * NeuroNames:495 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2549 ] * RETIRED_EHDAA2:0002199 * SCTID:244450009 - * UMLS:C0036286 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2549] - * UMLS:C0036286 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibular_Ganglion] - * UMLS:C0446706 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2549] + * UMLS:C0036286 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2549 ] + * UMLS:C0036286 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibular_Ganglion ] + * UMLS:C0446706 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2549 ] * VHOG:0000682 * Wikipedia:Scarpa%27s_ganglion * ncithesaurus:Vestibular_Ganglion @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002824 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0002924.md b/md/UBERON/24/UBERON_0002924.md index ea06466836..fe60417862 100644 --- a/md/UBERON/24/UBERON_0002924.md +++ b/md/UBERON/24/UBERON_0002924.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002924 * *Label* = terminal nerve - * *Definition* = The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15821344[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_nerve[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-041202-1] + * *Definition* = The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15821344, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_nerve, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-041202-1 ] * *Comment* = PMID:2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.' ## Synonyms - * cranial nerve 0 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_nerve] - * cranial nerve zero [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_nerve] - * nervus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001356] - * trn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4044[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * cranial nerve 0 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_nerve ] + * cranial nerve zero [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_nerve ] + * nervus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001356 ] + * trn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4044, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -19,10 +19,10 @@ * BAMS:trn * EFO:0003678 * NIF_GrossAnatomy:birnlex_4044 - * NeuroNames:33 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4044] + * NeuroNames:33 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4044 ] * TAO:0001356 - * UMLS:C0262346 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4044] - * UMLS:C1185749 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4044] + * UMLS:C0262346 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4044 ] + * UMLS:C1185749 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4044 ] * Wikipedia:Terminal_nerve * ZFA:0001356 @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003024.md b/md/UBERON/24/UBERON_0003024.md index 039aac79f0..8ca882405c 100644 --- a/md/UBERON/24/UBERON_0003024.md +++ b/md/UBERON/24/UBERON_0003024.md @@ -6,19 +6,19 @@ ## Synonyms - * nucleus ventralis posteromedialis, pars prinicipalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_927] - * VPMPr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_927[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis posteromedialis, pars principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:348[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * principal part of the ventral posteromedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:348] - * ventral posteromedial nucleus, principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:348] + * nucleus ventralis posteromedialis, pars prinicipalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_927 ] + * VPMPr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_927, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis posteromedialis, pars principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:348, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * principal part of the ventral posteromedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:348 ] + * ventral posteromedial nucleus, principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:348 ] ## Cross-references * BAMS:VPMPr * FMA:62208 * NIF_GrossAnatomy:birnlex_927 - * NeuroNames:348 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_927] - * UMLS:C0175289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_927] + * NeuroNames:348 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_927 ] + * UMLS:C0175289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_927 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003124.md b/md/UBERON/24/UBERON_0003124.md index 3369d37888..f753aaaf29 100644 --- a/md/UBERON/24/UBERON_0003124.md +++ b/md/UBERON/24/UBERON_0003124.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003124 * *Label* = chorion - * *Definition* = The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorion] + * *Definition* = The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorion ] * *Comment* = Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"]. ## Synonyms @@ -11,9 +11,9 @@ * chorion (vertebrates) * embryonic chorion * fetal chorion - * uterine chorion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] - * chorion frondosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorion] - * chorionic sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chorion] + * uterine chorion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] + * chorion frondosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorion ] + * chorionic sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chorion ] ## Cross-references @@ -27,8 +27,8 @@ * FMA:80224 * GAID:1299 * MESH:A16.254.403.473 - * UMLS:C0008503 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chorion] - * UMLS:C1516505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chorionic_Sac] + * UMLS:C0008503 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chorion ] + * UMLS:C1516505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chorionic_Sac ] * VHOG:0000200 * Wikipedia:Chorion * http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png @@ -62,8 +62,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = chorionic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003224.md b/md/UBERON/24/UBERON_0003224.md index f41af90803..808ca499f2 100644 --- a/md/UBERON/24/UBERON_0003224.md +++ b/md/UBERON/24/UBERON_0003224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003224 * *Label* = chorion syncytiotrophoblast - * *Definition* = An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [syncytiotrophoblast](../../UBERON/71/UBERON_0000371.md) and [extraembryonic structure](../../UBERON/78/UBERON_0000478.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chorion](../../UBERON/24/UBERON_0003124.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003324.md b/md/UBERON/24/UBERON_0003324.md index 3f505ffc0e..e3b2189318 100644 --- a/md/UBERON/24/UBERON_0003324.md +++ b/md/UBERON/24/UBERON_0003324.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003324 * *Label* = mesenchyme of lower jaw - * *Definition* = Mesenchyme that is part of a lower jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a lower jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lower jaw mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lower jaw mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003424.md b/md/UBERON/24/UBERON_0003424.md index 6a30cdd660..7a321d393a 100644 --- a/md/UBERON/24/UBERON_0003424.md +++ b/md/UBERON/24/UBERON_0003424.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003424 * *Label* = mesenchyme of hard palate - * *Definition* = Mesenchyme that is part of a hard palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a hard palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hard palate mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hard palate mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003524.md b/md/UBERON/24/UBERON_0003524.md index 4f934c2ef8..79cd761d98 100644 --- a/md/UBERON/24/UBERON_0003524.md +++ b/md/UBERON/24/UBERON_0003524.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003524 * *Label* = tail blood vessel - * *Definition* = A blood vessel that is part of a tail [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a tail [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003624.md b/md/UBERON/24/UBERON_0003624.md index 2df82d4502..5d4fa87518 100644 --- a/md/UBERON/24/UBERON_0003624.md +++ b/md/UBERON/24/UBERON_0003624.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003624 * *Label* = manual digit 4 - * *Definition* = 4th digit of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ring_finger] + * *Definition* = 4th digit of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ring_finger ] ## Synonyms * 4th digit of hand * 4th finger - * digit 4 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17438] - * finger 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000529] - * fore digit IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010642] - * fore limb digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24948] + * digit 4 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17438 ] + * finger 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000529 ] + * fore digit IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010642 ] + * fore limb digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24948 ] * fourth finger - * hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000457] - * hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000457 ] + * hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * ring finger - * digitus annularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ring_finger[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * digitus annularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ring_finger, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:24948 * MA:0000457 * SCTID:362768001 - * UMLS:C0230398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_4] + * UMLS:C0230398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_4 ] * Wikipedia:Ring_finger * http://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 4](../../UBERON/51/UBERON_0006051.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[ambiguous_for_taxon](../../core#ambiguous/on/core#ambiguous_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003724.md b/md/UBERON/24/UBERON_0003724.md index 976bfc4e28..ed1b2acb1b 100644 --- a/md/UBERON/24/UBERON_0003724.md +++ b/md/UBERON/24/UBERON_0003724.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003724 * *Label* = musculocutaneous nerve - * *Definition* = The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculocutaneous_nerve] + * *Definition* = The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculocutaneous_nerve ] ## Synonyms - * casserio's nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37064] - * nervus musculocutaneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculocutaneous_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * casserio's nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37064 ] + * nervus musculocutaneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculocutaneous_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003824.md b/md/UBERON/24/UBERON_0003824.md index f324f8c7e8..1d42a5497b 100644 --- a/md/UBERON/24/UBERON_0003824.md +++ b/md/UBERON/24/UBERON_0003824.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003824 * *Label* = nerve of thoracic segment - * *Definition* = A nerve that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000562] - * thorax nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper body nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000562] + * nerve of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000562 ] + * thorax nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper body nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000562 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003824 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0003924.md b/md/UBERON/24/UBERON_0003924.md index d2ab80feeb..66f90272c4 100644 --- a/md/UBERON/24/UBERON_0003924.md +++ b/md/UBERON/24/UBERON_0003924.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003924 * *Label* = ventral pancreatic bud - * *Definition* = pancreatic bud that gives rise to the major pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_bud] + * *Definition* = pancreatic bud that gives rise to the major pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_bud ] * *Comment* = Development notes: the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship. // The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP] ## Synonyms * pancreas primordium ventral bud - * pancreas ventral primordium duct bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001389] + * pancreas ventral primordium duct bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001389 ] * anterior pancreatic anlage * anterior pancreatic bud * ventral pancreas anlage @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In chick, Xenopus laevis, and the teleost fish Medaka, the pancreas develops from three buds that emerge from the gut tube, two from its ventral aspect, and one from its dorsal aspect. In mouse, although there are initially three buds that arise from the gut tube at the point of contact between the endoderm and the vasculature, the pancreas develops from only two of these buds, one dorsal and one ventral. (...) In this study, we use a transgenic zebrafish line (...). We provide evidence for the existence of two distinct pancreatic anlagen - a ventral anterior bud and a dorsal posterior bud - that join to form the definitive pancreas (reference 1); The pancreas develops from the fusion of distinct endoderm-derived dorsal and ventral diverticula. In humans, by day 35 of development, the ventral pancreatic bud begins to migrate backwards and comes into contact and eventually fuses with the dorsal pancreatic bud during the sixth week of development (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004024.md b/md/UBERON/24/UBERON_0004024.md index 6daa299f15..8ee81e2037 100644 --- a/md/UBERON/24/UBERON_0004024.md +++ b/md/UBERON/24/UBERON_0004024.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004024 * *Label* = medial ganglionic eminence - * *Definition* = a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004276] + * *Definition* = a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004276 ] ## Synonyms - * MGE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * MGE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004124.md b/md/UBERON/24/UBERON_0004124.md index bb24876d3d..b523fb8b3f 100644 --- a/md/UBERON/24/UBERON_0004124.md +++ b/md/UBERON/24/UBERON_0004124.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004124 * *Label* = myocardium trabecular layer - * *Definition* = The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005059] + * *Definition* = The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005059 ] ## Synonyms * myocardial trabecular layer - * trabecular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005059] + * trabecular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005059 ] * heart muscle trabecula - * heart muscle trabeculae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * myocardial trabeculae carneae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * heart muscle trabeculae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * myocardial trabeculae carneae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * trabecula of heart muscle - * trabeculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005059] + * trabeculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005059 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences Hu et al. 2001.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004224.md b/md/UBERON/24/UBERON_0004224.md index 09af3f14d7..7105bb9074 100644 --- a/md/UBERON/24/UBERON_0004224.md +++ b/md/UBERON/24/UBERON_0004224.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004224 * *Label* = vas deferens smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a vas deferens [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a vas deferens [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check MA and FMA classes mean the same thing ## Synonyms - * muscle layer of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * muscle layer of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * muscle layer of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * muscular coat of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * muscular layer of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * muscularis of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * tunica muscularis (Ductus deferens) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239] - * tunica muscularis ductus deferentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19239[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscle layer of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * muscle layer of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * muscle layer of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * muscular coat of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * muscular layer of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * muscularis of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * tunica muscularis (Ductus deferens) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239 ] + * tunica muscularis ductus deferentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19239, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004324.md b/md/UBERON/24/UBERON_0004324.md index 00cc78704f..358505d117 100644 --- a/md/UBERON/24/UBERON_0004324.md +++ b/md/UBERON/24/UBERON_0004324.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004324 * *Label* = middle phalanx of pedal digit 2 - * *Definition* = A middle phalanx that is part of a foot digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a foot digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd toe intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd toe middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32623] - * middle phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32623] - * middle phalanx of the 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second middle phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32623] + * 2nd toe intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd toe middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32623 ] + * middle phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32623 ] + * middle phalanx of the 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second middle phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32623 ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004424.md b/md/UBERON/24/UBERON_0004424.md index 0f0be8b279..2b20677397 100644 --- a/md/UBERON/24/UBERON_0004424.md +++ b/md/UBERON/24/UBERON_0004424.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004424 * *Label* = proximal epiphysis of third metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of third metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42794] - * proximal end of third metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42794] + * base of third metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42794 ] + * proximal end of third metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42794 ] * proximal epiphysis of metacarpal 3 - * third metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42794] + * third metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42794 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 3](../../UBERON/47/UBERON_0003647.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004524.md b/md/UBERON/24/UBERON_0004524.md index 9247eaf89c..17173b7b7f 100644 --- a/md/UBERON/24/UBERON_0004524.md +++ b/md/UBERON/24/UBERON_0004524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004524 * *Label* = papillary muscle of left ventricle - * *Definition* = A papillary muscle that is part of a left ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A papillary muscle that is part of a left ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [papillary muscle of heart](../../UBERON/94/UBERON_0002494.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004624.md b/md/UBERON/24/UBERON_0004624.md index c0b1fe76f9..7efdbd100f 100644 --- a/md/UBERON/24/UBERON_0004624.md +++ b/md/UBERON/24/UBERON_0004624.md @@ -7,10 +7,10 @@ ## Synonyms - * S3 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13079] - * Third sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13079] - * Third segment of sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13079] - * third sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13079] + * S3 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13079 ] + * Third sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13079 ] + * Third segment of sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13079 ] + * third sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13079 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:13079 * MA:0001436 * SCTID:181848005 - * UMLS:C0223600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:S3_Vertebra] + * UMLS:C0223600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:S3_Vertebra ] * ncithesaurus:S3_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004724.md b/md/UBERON/24/UBERON_0004724.md index 45a2468243..bcdc08de22 100644 --- a/md/UBERON/24/UBERON_0004724.md +++ b/md/UBERON/24/UBERON_0004724.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004724 * *Label* = medial palpebral ligament - * *Definition* = The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_ligament] + * *Definition* = The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_ligament ] ## Synonyms - * l. palpebrale mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * l. palpebrale mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * MA:0001258 * SCTID:280578002 - * UMLS:C0229251 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Palpebral_Ligament] + * UMLS:C0229251 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Palpebral_Ligament ] * Wikipedia:Medial_palpebral_ligament * http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray894.png/200px-Gray894.png @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0004924.md b/md/UBERON/24/UBERON_0004924.md index c25b0afc46..1554a7f77e 100644 --- a/md/UBERON/24/UBERON_0004924.md +++ b/md/UBERON/24/UBERON_0004924.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004924 * *Label* = submucosa of pharynx - * *Definition* = The tissue underlying the tunica mucosa of the pharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002113] + * *Definition* = The tissue underlying the tunica mucosa of the pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002113 ] ## Synonyms - * pharyngeal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75144] - * pharynx submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tela submucosa pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002113[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pharyngeal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75144 ] + * pharynx submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tela submucosa pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002113, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pharyngobasilar fascia - * submucous coat of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002113] - * submucous layer of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002113] + * submucous coat of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002113 ] + * submucous layer of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002113 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005024.md b/md/UBERON/24/UBERON_0005024.md index eb2db91c22..df625e5aff 100644 --- a/md/UBERON/24/UBERON_0005024.md +++ b/md/UBERON/24/UBERON_0005024.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005024 * *Label* = mucosa of soft palate - * *Definition* = A mucosa that is part of a soft palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a soft palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of soft palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of soft palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of soft palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of soft palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of soft palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of soft palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005124.md b/md/UBERON/24/UBERON_0005124.md index 82d4f5ef18..52a96cfb4c 100644 --- a/md/UBERON/24/UBERON_0005124.md +++ b/md/UBERON/24/UBERON_0005124.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005124 * *Label* = metanephric proximal convoluted tubule - * *Definition* = The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072229] + * *Definition* = The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072229 ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [proximal convoluted tubule](../../UBERON/87/UBERON_0001287.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005224.md b/md/UBERON/24/UBERON_0005224.md index 496532ecfc..6bfd9867a7 100644 --- a/md/UBERON/24/UBERON_0005224.md +++ b/md/UBERON/24/UBERON_0005224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005224 * *Label* = pancreas tail parenchyma - * *Definition* = A parenchyma that is part of a tail of pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a tail of pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tail of pancreas](../../UBERON/51/UBERON_0001151.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005324.md b/md/UBERON/24/UBERON_0005324.md index dcc5922316..8be15dcae4 100644 --- a/md/UBERON/24/UBERON_0005324.md +++ b/md/UBERON/24/UBERON_0005324.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005324 * *Label* = mesonephric macula densa - * *Definition* = The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061220] + * *Definition* = The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061220 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula densa](../../UBERON/35/UBERON_0002335.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005424.md b/md/UBERON/24/UBERON_0005424.md index 324a6c12ee..37d14ee365 100644 --- a/md/UBERON/24/UBERON_0005424.md +++ b/md/UBERON/24/UBERON_0005424.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005424 * *Label* = presumptive retinal pigmented epithelium - * *Definition* = Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of tissue that is the outer layer of the optic cup and will become the retinal pigmented epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * optic cup outer layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001306] - * outer layer optic cup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000064] - * presumptive pigmented epithelia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000064[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * future PRE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16677] - * future pigmented layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16677] - * future pigmented retinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16677] - * presumptive pigmented epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000064] + * optic cup outer layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001306 ] + * outer layer optic cup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000064 ] + * presumptive pigmented epithelia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000064, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * future PRE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16677 ] + * future pigmented layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16677 ] + * future pigmented retinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16677 ] + * presumptive pigmented epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000064 ] ## Cross-references @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005624.md b/md/UBERON/24/UBERON_0005624.md index 53869ad680..caa6f058b8 100644 --- a/md/UBERON/24/UBERON_0005624.md +++ b/md/UBERON/24/UBERON_0005624.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005624 * *Label* = suprarenal artery - * *Definition* = Artery that supplies blood to the adrenal glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_artery] + * *Definition* = Artery that supplies blood to the adrenal glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_artery ] ## Synonyms - * adrenal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_artery] + * adrenal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_artery ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [adrenal gland](../../UBERON/69/UBERON_0002369.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0005724.md b/md/UBERON/24/UBERON_0005724.md index 96689d498f..6b4e896517 100644 --- a/md/UBERON/24/UBERON_0005724.md +++ b/md/UBERON/24/UBERON_0005724.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005724 * *Label* = roof plate spinal cord region - * *Definition* = A tissue that is part of a spinal cord and is part of a roof plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tissue that is part of a spinal cord and is part of a roof plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000777] - * roofplate spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000777] - * spinal cord roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000777] + * roof plate spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000777 ] + * roofplate spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000777 ] + * spinal cord roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000777 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the spinal cord. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005246 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0006124.md b/md/UBERON/24/UBERON_0006124.md index 7ee4439271..1518c7dc48 100644 --- a/md/UBERON/24/UBERON_0006124.md +++ b/md/UBERON/24/UBERON_0006124.md @@ -6,10 +6,10 @@ ## Synonyms - * Vertical limb of the diagonal band of Broca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090304] - * vertical limb of diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77612] - * vertical limb of the diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090304] - * nucleus of the vertical limb of the diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VDB] + * Vertical limb of the diagonal band of Broca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090304 ] + * vertical limb of diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77612 ] + * vertical limb of the diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090304 ] + * nucleus of the vertical limb of the diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VDB ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0006224.md b/md/UBERON/24/UBERON_0006224.md index 6171133f47..653fcd905e 100644 --- a/md/UBERON/24/UBERON_0006224.md +++ b/md/UBERON/24/UBERON_0006224.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0006524.md b/md/UBERON/24/UBERON_0006524.md index 0705cb4ac9..2b610b103c 100644 --- a/md/UBERON/24/UBERON_0006524.md +++ b/md/UBERON/24/UBERON_0006524.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006524 * *Label* = alveolar system - * *Definition* = System pertaining to a bronchus and alveoli. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000136] + * *Definition* = System pertaining to a bronchus and alveoli. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000136 ] ## Synonyms - * pulmonary alveolar system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010899] - * bronchoalveolar system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000136] + * pulmonary alveolar system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010899 ] + * bronchoalveolar system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000136 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0006724.md b/md/UBERON/24/UBERON_0006724.md index a2185d37f1..a5ded7816b 100644 --- a/md/UBERON/24/UBERON_0006724.md +++ b/md/UBERON/24/UBERON_0006724.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006724 * *Label* = osseus spiral lamina - * *Definition* = The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osseous_spiral_lamina] + * *Definition* = The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osseous_spiral_lamina ] ## Synonyms - * lamina modioli cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77710[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina of modiolus cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77710] - * lamina of modiolus of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77710] + * lamina modioli cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77710, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina of modiolus cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77710 ] + * lamina of modiolus of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77710 ] * osseous spiral lamina - * osseous spiral lamina of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77710] + * osseous spiral lamina of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77710 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0006924.md b/md/UBERON/24/UBERON_0006924.md index 95041752e8..c1c683cf21 100644 --- a/md/UBERON/24/UBERON_0006924.md +++ b/md/UBERON/24/UBERON_0006924.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006924 * *Label* = stomach glandular epithelium - * *Definition* = A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Editor notes: we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland. Consider also: stomach glandular region as a part-of parent ## Synonyms - * epithelium of gastric gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63458] - * gastric gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63458] + * epithelium of gastric gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63458 ] + * gastric gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63458 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glandular epithelium](../../UBERON/99/UBERON_0006799.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0007124.md b/md/UBERON/24/UBERON_0007124.md index c6a842a79c..4f70466a6c 100644 --- a/md/UBERON/24/UBERON_0007124.md +++ b/md/UBERON/24/UBERON_0007124.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007124 * *Label* = pharyngeal pouch 3 - * *Definition* = A pharyngeal pouch that between pharyngeal arches 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16313389[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch] + * *Definition* = A pharyngeal pouch that between pharyngeal arches 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16313389, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch ] * *Comment* = Development notes: The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP] ## Synonyms - * 3rd arch branchial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000076] - * 3rd arch branchial pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000077] + * 3rd arch branchial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000076 ] + * 3rd arch branchial pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000077 ] * 3rd branchial pouch - * 3rd pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001030] - * pharyngeal pouches 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001131[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * third arch pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000251] - * visceral pouch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000251] - * third pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000966] + * 3rd pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001030 ] + * pharyngeal pouches 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001131, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * third arch pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000251 ] + * visceral pouch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000251 ] + * third pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000966 ] ## Cross-references @@ -27,7 +27,7 @@ * RETIRED_EHDAA2:0000076 * SCTID:345450001 * TAO:0001131 - * UMLS:C0231070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Third_Pharyngeal_Pouch] + * UMLS:C0231070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Third_Pharyngeal_Pouch ] * VHOG:0000966 * VHOG:0001030 * Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch @@ -43,12 +43,12 @@ ## Superclasses * [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) and [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005716 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0007224.md b/md/UBERON/24/UBERON_0007224.md index d8157983e0..1334c1a1b5 100644 --- a/md/UBERON/24/UBERON_0007224.md +++ b/md/UBERON/24/UBERON_0007224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007224 * *Label* = medial entorhinal cortex - * *Definition* = The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004347] + * *Definition* = The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004347 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0007324.md b/md/UBERON/24/UBERON_0007324.md index 96eb648cf5..66ffdbfac1 100644 --- a/md/UBERON/24/UBERON_0007324.md +++ b/md/UBERON/24/UBERON_0007324.md @@ -7,9 +7,9 @@ ## Synonyms - * lobulus pancreaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16012] - * pancreas lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000721] - * pancreatic lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16012] + * lobulus pancreaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16012 ] + * pancreas lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000721 ] + * pancreatic lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16012 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0007524.md b/md/UBERON/24/UBERON_0007524.md index c93d421376..c91cf6b0fc 100644 --- a/md/UBERON/24/UBERON_0007524.md +++ b/md/UBERON/24/UBERON_0007524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007524 * *Label* = dense mesenchyme tissue - * *Definition* = Mesenchyme with little extracellular matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Mesenchyme with little extracellular matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003146 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0007724.md b/md/UBERON/24/UBERON_0007724.md index 5c48371506..514e905c04 100644 --- a/md/UBERON/24/UBERON_0007724.md +++ b/md/UBERON/24/UBERON_0007724.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007724 * *Label* = interphalangeal joint of pedal digit 1 - * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of first digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35353] - * interphalangeal joint of first digit of pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35353] + * interphalangeal joint of first digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35353 ] + * interphalangeal joint of first digit of pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35353 ] * interphalangeal joint of foot digit 1 - * interphalangeal joint of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35353] + * interphalangeal joint of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35353 ] * interphalangeal joint of hallux * interphalangeal joint of pedal digit 1 - * interphalangeal joint of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35353[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35353, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,15 +31,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of pes](../../UBERON/21/UBERON_0007721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0008124.md b/md/UBERON/24/UBERON_0008124.md index 729a83e126..b85be2fa0c 100644 --- a/md/UBERON/24/UBERON_0008124.md +++ b/md/UBERON/24/UBERON_0008124.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0008324.md b/md/UBERON/24/UBERON_0008324.md index 81870e73b8..46af26bfaf 100644 --- a/md/UBERON/24/UBERON_0008324.md +++ b/md/UBERON/24/UBERON_0008324.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008324 * *Label* = erectile tissue - * *Definition* = with numerous vascular spaces that may become engorged with blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erectile_tissue] + * *Definition* = with numerous vascular spaces that may become engorged with blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erectile_tissue ] * *Comment* = Examples: corpus cavernosum or penis or clitoris ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0008424.md b/md/UBERON/24/UBERON_0008424.md index 508844816e..2787130c04 100644 --- a/md/UBERON/24/UBERON_0008424.md +++ b/md/UBERON/24/UBERON_0008424.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008424 * *Label* = inguinal mammary gland - * *Definition* = A mammary gland that is part of a inguinal part of abdomen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mammary gland that is part of a inguinal part of abdomen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mammary gland](../../UBERON/11/UBERON_0001911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inguinal part of abdomen](../../UBERON/37/UBERON_0008337.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0008824.md b/md/UBERON/24/UBERON_0008824.md index d4e45f79fa..d366d39cda 100644 --- a/md/UBERON/24/UBERON_0008824.md +++ b/md/UBERON/24/UBERON_0008824.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008824 * *Label* = duct of epididymis - * *Definition* = A duct that is part of a epididymis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a epididymis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epididymal duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001735] - * epididymis duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18297] + * epididymal duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001735 ] + * epididymis duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18297 ] ## Cross-references * FMA:18297 * MA:0001735 * SCTID:279623004 - * UMLS:C0458632 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Duct_of_the_Epididymis] + * UMLS:C0458632 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Duct_of_the_Epididymis ] * ncithesaurus:Duct_of_the_Epididymis ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008824 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0008924.md b/md/UBERON/24/UBERON_0008924.md index c3fe904bb4..03e1062568 100644 --- a/md/UBERON/24/UBERON_0008924.md +++ b/md/UBERON/24/UBERON_0008924.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008924 * *Label* = sublaminar layer S3 - * *Definition* = A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) and [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) and [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0009024.md b/md/UBERON/24/UBERON_0009024.md index 8a175f40a8..3901fe41d3 100644 --- a/md/UBERON/24/UBERON_0009024.md +++ b/md/UBERON/24/UBERON_0009024.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009024 * *Label* = adrenal gland X zone - * *Definition* = A wide juxta-medullary layer of cells in the adrenal glands of young mature virgin female mice. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.jstor.org/pss/82802] + * *Definition* = A wide juxta-medullary layer of cells in the adrenal glands of young mature virgin female mice. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.jstor.org/pss/82802 ] ## Synonyms - * juvenile zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001888] + * juvenile zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001888 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0009124.md b/md/UBERON/24/UBERON_0009124.md index 57745d3b9c..853e68f351 100644 --- a/md/UBERON/24/UBERON_0009124.md +++ b/md/UBERON/24/UBERON_0009124.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009124 * *Label* = geniculate placode - * *Definition* = Rostralmost epibranchial placode. Associated with 1st branchial cleft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NBK:NBK53175] + * *Definition* = Rostralmost epibranchial placode. Associated with 1st branchial cleft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NBK:NBK53175 ] * *Comment* = Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to geniculate ganglion ## Synonyms - * epibranchial placode 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004206] - * facial epibranchial placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004211] - * facial placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001295] + * epibranchial placode 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004206 ] + * facial epibranchial placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004211 ] + * facial placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001295 ] * facial VII placode - * hyoid VII placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * hyoid placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * hyoid VII placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * hyoid placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0009624.md b/md/UBERON/24/UBERON_0009624.md index 4fff864424..6e9d00e991 100644 --- a/md/UBERON/24/UBERON_0009624.md +++ b/md/UBERON/24/UBERON_0009624.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009624 * *Label* = lumbar nerve - * *Definition* = The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_nerves] + * *Definition* = The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_nerves ] ## Synonyms - * lumbar spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5861] - * nervi lumbales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_nerves[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lumbar spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5861 ] + * nervi lumbales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_nerves, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:5861 * NeuroNames:1730 * SCTID:361600002 - * UMLS:C0228897 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Nerve] + * UMLS:C0228897 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Nerve ] * Wikipedia:Lumbar_nerves * http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png * ncithesaurus:Lumbar_Nerve @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010024.md b/md/UBERON/24/UBERON_0010024.md index 4df7d1338c..3139cd594b 100644 --- a/md/UBERON/24/UBERON_0010024.md +++ b/md/UBERON/24/UBERON_0010024.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010124.md b/md/UBERON/24/UBERON_0010124.md index a79b0dec61..966716533d 100644 --- a/md/UBERON/24/UBERON_0010124.md +++ b/md/UBERON/24/UBERON_0010124.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010124 * *Label* = future inferior salivatory nucleus - * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a inferior salivatory nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a inferior salivatory nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - devfrom ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010224.md b/md/UBERON/24/UBERON_0010224.md index 82e6d0b8ab..4e9db657de 100644 --- a/md/UBERON/24/UBERON_0010224.md +++ b/md/UBERON/24/UBERON_0010224.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010224 * *Label* = right pupil - * *Definition* = A pupil that is part of a right eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pupil that is part of a right eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pupil of right eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58253] + * pupil of right eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58253 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right eye](../../UBERON/49/UBERON_0004549.md) and [pupil](../../UBERON/71/UBERON_0001771.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010324.md b/md/UBERON/24/UBERON_0010324.md index f770fdf1a9..440503e8f7 100644 --- a/md/UBERON/24/UBERON_0010324.md +++ b/md/UBERON/24/UBERON_0010324.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001456 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010324 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_0010424.md b/md/UBERON/24/UBERON_0010424.md index 41a3bf6c92..fe61187df5 100644 --- a/md/UBERON/24/UBERON_0010424.md +++ b/md/UBERON/24/UBERON_0010424.md @@ -7,8 +7,8 @@ ## Synonyms - * distal part of rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15906248] - * distal rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001397] + * distal part of rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15906248 ] + * distal rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001397 ] * sternal rib * vertical segment of rib @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010524.md b/md/UBERON/24/UBERON_0010524.md index aa783f78cd..4d9b89b3e5 100644 --- a/md/UBERON/24/UBERON_0010524.md +++ b/md/UBERON/24/UBERON_0010524.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010524 * *Label* = fibularis tertius - * *Definition* = The peroneus tertius (also known as fibularis tertius) is a muscle of the human body located in the lower limb. The muscle arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis. The tendon, after passing under the superior extensor retinaculum of foot and inferior extensor retinaculum of foot in the same canal as the extensor digitorum longus, is inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius_muscle] + * *Definition* = The peroneus tertius (also known as fibularis tertius) is a muscle of the human body located in the lower limb. The muscle arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis. The tendon, after passing under the superior extensor retinaculum of foot and inferior extensor retinaculum of foot in the same canal as the extensor digitorum longus, is inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius_muscle ] ## Synonyms - * musculus peroneus tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * peroneus tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22538] - * peroneus tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius] - * peroneus tertius muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius] - * fibularis tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius] - * fibularis tertius muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius] - * peronaeus tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_tertius] + * musculus peroneus tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * peroneus tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22538 ] + * peroneus tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius ] + * peroneus tertius muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius ] + * fibularis tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius ] + * fibularis tertius muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius ] + * peronaeus tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_tertius ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0010724.md b/md/UBERON/24/UBERON_0010724.md index 2e2e549fa0..f365de3521 100644 --- a/md/UBERON/24/UBERON_0010724.md +++ b/md/UBERON/24/UBERON_0010724.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010724 * *Label* = lateral tubercle of talus - * *Definition* = An accessory bone tubercle which if present lies posterior to the talus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Os_trigonum] + * *Definition* = An accessory bone tubercle which if present lies posterior to the talus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Os_trigonum ] ## Synonyms - * accessory talus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Os_trigonum] - * os trigonum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os trigonum of talus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33655] - * tuberculum laterale (talus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33655] + * accessory talus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Os_trigonum ] + * os trigonum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os trigonum of talus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33655 ] + * tuberculum laterale (talus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33655 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010724 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0011024.md b/md/UBERON/24/UBERON_0011024.md index 54066c88ea..d8d45117d9 100644 --- a/md/UBERON/24/UBERON_0011024.md +++ b/md/UBERON/24/UBERON_0011024.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011024 * *Label* = extrinsic extensor muscle of manus - * *Definition* = The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extrinsic_extensor_muscles_of_the_hand] + * *Definition* = The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extrinsic_extensor_muscles_of_the_hand ] ## Synonyms - * extrinsic extensor muscle of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extrinsic_extensor_muscles_of_the_hand] + * extrinsic extensor muscle of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extrinsic_extensor_muscles_of_the_hand ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [extensor muscle](../../UBERON/11/UBERON_0000311.md) and [has muscle insertion](../../RO/73/RO_0002373.md) some [manus bone](../../UBERON/97/UBERON_0005897.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0011124.md b/md/UBERON/24/UBERON_0011124.md index 463b3b7ee8..87e38c537c 100644 --- a/md/UBERON/24/UBERON_0011124.md +++ b/md/UBERON/24/UBERON_0011124.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011124 * *Label* = xiphisternal joint - * *Definition* = The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphisternal_joint] + * *Definition* = The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphisternal_joint ] ## Synonyms - * synchondrosis xiphisternalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7503] - * xiphisternal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphisternal_joint] - * xiphisternal synchdrondosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphisternal_joint] + * synchondrosis xiphisternalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7503 ] + * xiphisternal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphisternal_joint ] + * xiphisternal synchdrondosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphisternal_joint ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [body of sternum](../../UBERON/20/UBERON_0006820.md) and [connects](../../ts/core#connects.md) some [xiphoid process](../../UBERON/07/UBERON_0002207.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0011624.md b/md/UBERON/24/UBERON_0011624.md index af24f2a743..d6e6a3db33 100644 --- a/md/UBERON/24/UBERON_0011624.md +++ b/md/UBERON/24/UBERON_0011624.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011624 * *Label* = superior horn of thyroid cartilage - * *Definition* = The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_horn_of_thyroid_cartilage] + * *Definition* = The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_horn_of_thyroid_cartilage ] ## Synonyms - * cornu superius (cartilago thyroidea) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55294] - * cornu superius cartilaginis thyroideae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior cornu of thyroid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55294] + * cornu superius (cartilago thyroidea) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55294 ] + * cornu superius cartilaginis thyroideae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior cornu of thyroid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55294 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0011824.md b/md/UBERON/24/UBERON_0011824.md index 3f72429066..4f14dbacad 100644 --- a/md/UBERON/24/UBERON_0011824.md +++ b/md/UBERON/24/UBERON_0011824.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011824 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0011924.md b/md/UBERON/24/UBERON_0011924.md index 6993b67864..ca674247d6 100644 --- a/md/UBERON/24/UBERON_0011924.md +++ b/md/UBERON/24/UBERON_0011924.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011924 * *Label* = postganglionic autonomic fiber - * *Definition* = Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.663.542.100[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postganglionic_nerve_fibers] + * *Definition* = Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.663.542.100, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postganglionic_nerve_fibers ] ## Synonyms - * postganglionic nerve fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5924] + * postganglionic nerve fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5924 ] * postganglionic autonomic fibre ## Cross-references * FMA:5924 * MESH:A08.663.542.100 - * UMLS:C0004384 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Postganglionic_Autonomic_Fiber] + * UMLS:C0004384 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Postganglionic_Autonomic_Fiber ] * Wikipedia:Postganglionic_nerve_fibers * ncithesaurus:Postganglionic_Autonomic_Fiber @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011924 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0012124.md b/md/UBERON/24/UBERON_0012124.md index a25f197212..e0081ede71 100644 --- a/md/UBERON/24/UBERON_0012124.md +++ b/md/UBERON/24/UBERON_0012124.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0012324.md b/md/UBERON/24/UBERON_0012324.md index 16b45a4f70..f5f69ad421 100644 --- a/md/UBERON/24/UBERON_0012324.md +++ b/md/UBERON/24/UBERON_0012324.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012324 * *Label* = transverse cervical artery - * *Definition* = The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] + * *Definition* = The transverse cervical artery (transverse artery of neck, transversa colli artery) is a branch of the thyrocervical trunk, running at a higher level than the suprascapular artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] * *Comment* = AO notes: Unclear if MA class belongs here or in parent ## Synonyms - * cervical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001936] - * cervical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * cervical transverse artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * descending branch of the transverse cervical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * transversalis artery colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * transversalis colli artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * transverse cervical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] - * transverse cervical vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_cervical_artery] + * cervical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001936 ] + * cervical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * cervical transverse artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * descending branch of the transverse cervical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * transversalis artery colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * transversalis colli artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * transverse cervical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] + * transverse cervical vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_cervical_artery ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012324 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0012424.md b/md/UBERON/24/UBERON_0012424.md index 7ab8504c84..27135d436b 100644 --- a/md/UBERON/24/UBERON_0012424.md +++ b/md/UBERON/24/UBERON_0012424.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012424 * *Label* = brush border layer - * *Definition* = the microvilli-covered surface of simple cuboidal epithelium and simple columnar epithelium cells found in certain locations of the body. Found in small intestine and kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brush_border] + * *Definition* = the microvilli-covered surface of simple cuboidal epithelium and simple columnar epithelium cells found in certain locations of the body. Found in small intestine and kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brush_border ] * *Comment* = AO notes: FMA class represents an individual microvillus ## Synonyms - * brush border [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70977] - * brush border membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brush_border] + * brush border [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70977 ] + * brush border membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brush_border ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0013124.md b/md/UBERON/24/UBERON_0013124.md index 0fcd375cf6..0229c4d51d 100644 --- a/md/UBERON/24/UBERON_0013124.md +++ b/md/UBERON/24/UBERON_0013124.md @@ -6,8 +6,8 @@ ## Synonyms - * left postcardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70316] - * posterior cardinal vein left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001486] + * left postcardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70316 ] + * posterior cardinal vein left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001486 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [posterior cardinal vein](../../UBERON/65/UBERON_0002065.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013124 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0013224.md b/md/UBERON/24/UBERON_0013224.md index bf7804aca5..6bc5ef6f79 100644 --- a/md/UBERON/24/UBERON_0013224.md +++ b/md/UBERON/24/UBERON_0013224.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013224 * *Label* = Ciaccio's gland - * *Definition* = Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciaccio's_glands] + * *Definition* = Ciaccio's glands are small tubular accessory lacrimal glands (glandulae lacrimales accessoriae) found in the lacrimal caruncle of the eyelid. They are located in the upper border of the tarsus, approximately in the middle between the extremities of the tarsal glands. Sometimes they are situated slightly above the tarsus. There are usually 2 to 5 of these glands in the upper eyelid, and their function is to produce tears which are secreted onto the surface of the conjunctiva. They are named after Italian anatomist Giuseppe Vincenzo Ciaccio (1824b1901), who described these glands in 1874. They are sometimes called Wolfring's glands after Polish ophthalmologist Emilj von Wolfring (1832-1906), who described them during the same time period as did Ciaccio. Another type of accessory lacrimal gland are Krause's glands, which are smaller, more numerous than Ciaccio's glands and are found along the superior and inferior fornices of the conjunctival sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciaccio's_glands ] ## Synonyms - * Wolfring's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciaccio's_glands] - * gland of Wolfring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciaccio's_glands[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Gland_of_Wolfring] + * Wolfring's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciaccio's_glands ] + * gland of Wolfring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciaccio's_glands, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Gland_of_Wolfring ] * gland of Wolfring and Ciacco ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013224 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0013424.md b/md/UBERON/24/UBERON_0013424.md index 6b596b87ae..d7c297f399 100644 --- a/md/UBERON/24/UBERON_0013424.md +++ b/md/UBERON/24/UBERON_0013424.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013424 * *Label* = lambda - * *Definition* = The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal suturesa point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lambda_(anatomy)] + * *Definition* = The occipital angle is rounded and corresponds with the point of meeting of the sagittal and lambdoidal suturesa point which is termed the lambda (after the Greek letter of the same name); in the fetus this part of the skull is membranous, and is called the posterior fontanelle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lambda_(anatomy) ] ## Synonyms - * lambda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lambda_(anatomy)] + * lambda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lambda_(anatomy) ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013424 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0013524.md b/md/UBERON/24/UBERON_0013524.md index 68db4b2152..15bc1a9cc4 100644 --- a/md/UBERON/24/UBERON_0013524.md +++ b/md/UBERON/24/UBERON_0013524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013524 * *Label* = median vaginal canal - * *Definition* = A median canal in the reproductive system of marsupials that connects the uteri to a common tract, joining with the two lateral vaginas. Connects the uterine openings directly with the urogenital sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A median canal in the reproductive system of marsupials that connects the uteri to a common tract, joining with the two lateral vaginas. Connects the uterine openings directly with the urogenital sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [lateral vaginal canal](../../UBERON/23/UBERON_0013523.md) and [intersects_midsagittal_plane_of](../../BSPO/01/BSPO_0005001.md) some [internal female genitalia](../../UBERON/75/UBERON_0003975.md) and [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0014524.md b/md/UBERON/24/UBERON_0014524.md index 981fa6c2c6..2ced576bbe 100644 --- a/md/UBERON/24/UBERON_0014524.md +++ b/md/UBERON/24/UBERON_0014524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014524 * *Label* = electromotor division of oculomotor nuclear complex - * *Definition* = A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A division of oculomotor nuclear complex that exists in organisms with electric organs which has axons terminating in the electric organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_70846 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014524 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0014624.md b/md/UBERON/24/UBERON_0014624.md index 92e8c56263..6cd2bce958 100644 --- a/md/UBERON/24/UBERON_0014624.md +++ b/md/UBERON/24/UBERON_0014624.md @@ -6,16 +6,16 @@ ## Synonyms - * base of modiolus cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75640] - * basis modioli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2522[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * base of modiolus of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2522] + * base of modiolus cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75640 ] + * basis modioli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2522, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * base of modiolus of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2522 ] ## Cross-references * FMA:75640 * NIF_GrossAnatomy:birnlex_2522 * SCTID:279799003 - * UMLS:C0458781 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2522] + * UMLS:C0458781 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2522 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014624 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_0015024.md b/md/UBERON/24/UBERON_0015024.md index 58c8bc0ac2..4c5a2b6936 100644 --- a/md/UBERON/24/UBERON_0015024.md +++ b/md/UBERON/24/UBERON_0015024.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015024 * *Label* = manual digit phalanx endochondral element - * *Definition* = A manual digit phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit phalanx cartilage element](../../UBERON/86/UBERON_0010686.md)or[manual digit phalanx pre-cartilage condensation](../../UBERON/86/UBERON_0010586.md)or[phalanx of manus](../../UBERON/36/UBERON_0001436.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_1000024.md b/md/UBERON/24/UBERON_1000024.md index 311a893a7a..583ef0ce4f 100644 --- a/md/UBERON/24/UBERON_1000024.md +++ b/md/UBERON/24/UBERON_1000024.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_1000024 * *Label* = parenchyma of spleen - * *Definition* = A parenchyma that is part of a spleen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a spleen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * splenic parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16029] + * splenic parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16029 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:1000024 + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2000224.md b/md/UBERON/24/UBERON_2000224.md index 6f0b452b2d..801684b8a7 100644 --- a/md/UBERON/24/UBERON_2000224.md +++ b/md/UBERON/24/UBERON_2000224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000224 * *Label* = quadrate ventral process - * *Definition* = Process that is the ventral, posteriorly-oriented bony extension of the quadrate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the ventral, posteriorly-oriented bony extension of the quadrate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2000324.md b/md/UBERON/24/UBERON_2000324.md index 227e54bd37..a113386c3b 100644 --- a/md/UBERON/24/UBERON_2000324.md +++ b/md/UBERON/24/UBERON_2000324.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2000424.md b/md/UBERON/24/UBERON_2000424.md index 854b714363..da85a24500 100644 --- a/md/UBERON/24/UBERON_2000424.md +++ b/md/UBERON/24/UBERON_2000424.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000424 * *Label* = opercular lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2000624.md b/md/UBERON/24/UBERON_2000624.md index b39de22bb9..3947b5af33 100644 --- a/md/UBERON/24/UBERON_2000624.md +++ b/md/UBERON/24/UBERON_2000624.md @@ -6,7 +6,7 @@ ## Synonyms - * brachium conjunctivium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000624] + * brachium conjunctivium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000624 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002150 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_2000724.md b/md/UBERON/24/UBERON_2000724.md index 2becc3f3ee..213eee28ca 100644 --- a/md/UBERON/24/UBERON_2000724.md +++ b/md/UBERON/24/UBERON_2000724.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000724[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000724, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_2000924.md b/md/UBERON/24/UBERON_2000924.md index c25d900367..6b8d1d987b 100644 --- a/md/UBERON/24/UBERON_2000924.md +++ b/md/UBERON/24/UBERON_2000924.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000924 * *Label* = myotome somite 1 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001124.md b/md/UBERON/24/UBERON_2001124.md index 37562e45c4..0168d94bff 100644 --- a/md/UBERON/24/UBERON_2001124.md +++ b/md/UBERON/24/UBERON_2001124.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001124 * *Label* = obsolete dorsal fin skeleton - * *Definition* = Median fin skeleton located on the dorsal surface of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Median fin skeleton located on the dorsal surface of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000168 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_2001224.md b/md/UBERON/24/UBERON_2001224.md index 1ca64926c2..4133c8a068 100644 --- a/md/UBERON/24/UBERON_2001224.md +++ b/md/UBERON/24/UBERON_2001224.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001224 * *Label* = basibranchial 2 bone - * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). Typically develops in the anterior copula cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 2 element](../../UBERON/16/UBERON_2001916.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001324.md b/md/UBERON/24/UBERON_2001324.md index 7a0166d8e0..9c28be6c33 100644 --- a/md/UBERON/24/UBERON_2001324.md +++ b/md/UBERON/24/UBERON_2001324.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001524.md b/md/UBERON/24/UBERON_2001524.md index c86b8c1064..2da6af1c0e 100644 --- a/md/UBERON/24/UBERON_2001524.md +++ b/md/UBERON/24/UBERON_2001524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001524 * *Label* = hypobranchial 1 cartilage - * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001624.md b/md/UBERON/24/UBERON_2001624.md index 71d9db50d9..af02bef558 100644 --- a/md/UBERON/24/UBERON_2001624.md +++ b/md/UBERON/24/UBERON_2001624.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001624 * *Label* = type 2 odontode - * *Definition* = Odontode that is attached to the skin and without association to dermal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Odontode that is attached to the skin and without association to dermal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Term from Schaefer & Buitrago-Suarez 2002. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001724.md b/md/UBERON/24/UBERON_2001724.md index ff66e6fbb6..e343d54e27 100644 --- a/md/UBERON/24/UBERON_2001724.md +++ b/md/UBERON/24/UBERON_2001724.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001724 * *Label* = caudal principal ray 12 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 11. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 11. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001824.md b/md/UBERON/24/UBERON_2001824.md index 9bb8ae35f1..f15073f78f 100644 --- a/md/UBERON/24/UBERON_2001824.md +++ b/md/UBERON/24/UBERON_2001824.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001824 * *Label* = lateral line scale - * *Definition* = Scale that is associated with the lateral line sensory canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scale that is associated with the lateral line sensory canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2001924.md b/md/UBERON/24/UBERON_2001924.md index dc87163961..bd5ab36625 100644 --- a/md/UBERON/24/UBERON_2001924.md +++ b/md/UBERON/24/UBERON_2001924.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001924 * *Label* = occipital artery foramen - * *Definition* = Foramina that allow passage of occipital arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramina that allow passage of occipital arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2002024.md b/md/UBERON/24/UBERON_2002024.md index d7d2706852..d97d1e4fdd 100644 --- a/md/UBERON/24/UBERON_2002024.md +++ b/md/UBERON/24/UBERON_2002024.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002024 * *Label* = mental barbel - * *Definition* = Barbel that originates on the chin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Barbel that originates on the chin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2002124.md b/md/UBERON/24/UBERON_2002124.md index a8bde7d5d2..195bdd2511 100644 --- a/md/UBERON/24/UBERON_2002124.md +++ b/md/UBERON/24/UBERON_2002124.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002124 * *Label* = nuptial tubercle - * *Definition* = Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Nuptial tubercles may be keratinized or nonkeratinized. Also may function in territorial defense or stimulation of females in breeding. Definition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles and contact organs in fishes: Their occurrence, structure, and significance. Bull Am Mus Nat Hist 143: 143-216. ## Synonyms - * breeding tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002124] - * contact organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002124] + * breeding tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002124 ] + * contact organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002124 ] ## Cross-references @@ -33,7 +33,9 @@ Definition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2002224.md b/md/UBERON/24/UBERON_2002224.md index 1df2da54f6..721f67c10b 100644 --- a/md/UBERON/24/UBERON_2002224.md +++ b/md/UBERON/24/UBERON_2002224.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2005224.md b/md/UBERON/24/UBERON_2005224.md index f54a41587f..01fcafbc5a 100644 --- a/md/UBERON/24/UBERON_2005224.md +++ b/md/UBERON/24/UBERON_2005224.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_2005324.md b/md/UBERON/24/UBERON_2005324.md index db9ce4c3da..8ce326725c 100644 --- a/md/UBERON/24/UBERON_2005324.md +++ b/md/UBERON/24/UBERON_2005324.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005324 * *Label* = obsolete gill ionocyte - * *Definition* = Ionocyte located in the gills [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ionocyte located in the gills [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_2007024.md b/md/UBERON/24/UBERON_2007024.md index 61a368f38e..1711a9bc5a 100644 --- a/md/UBERON/24/UBERON_2007024.md +++ b/md/UBERON/24/UBERON_2007024.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3000224.md b/md/UBERON/24/UBERON_3000224.md index c8d44c5f33..6724055940 100644 --- a/md/UBERON/24/UBERON_3000224.md +++ b/md/UBERON/24/UBERON_3000224.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3000524.md b/md/UBERON/24/UBERON_3000524.md index d10b293c5e..eb2e51a40a 100644 --- a/md/UBERON/24/UBERON_3000524.md +++ b/md/UBERON/24/UBERON_3000524.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3000824.md b/md/UBERON/24/UBERON_3000824.md index 456a623bae..fad2e6608b 100644 --- a/md/UBERON/24/UBERON_3000824.md +++ b/md/UBERON/24/UBERON_3000824.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000824 * *Label* = tenuitas cristaeformis - * *Definition* = Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010124.md b/md/UBERON/24/UBERON_3010124.md index 3c9ad8ecf5..fa99fad2db 100644 --- a/md/UBERON/24/UBERON_3010124.md +++ b/md/UBERON/24/UBERON_3010124.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010224.md b/md/UBERON/24/UBERON_3010224.md index 87803b6a28..715c8ab6cb 100644 --- a/md/UBERON/24/UBERON_3010224.md +++ b/md/UBERON/24/UBERON_3010224.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010324.md b/md/UBERON/24/UBERON_3010324.md index 579f9fd5e9..f0e89a6aa5 100644 --- a/md/UBERON/24/UBERON_3010324.md +++ b/md/UBERON/24/UBERON_3010324.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010324 * *Label* = obsolete zygote - * *Definition* = Diploid cell produced by the fusion of sperm cell nucleus and egg cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Diploid cell produced by the fusion of sperm cell nucleus and egg cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * fertilized egg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010324] + * fertilized egg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010324 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000365 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_3010424.md b/md/UBERON/24/UBERON_3010424.md index 436cc40374..ece327107c 100644 --- a/md/UBERON/24/UBERON_3010424.md +++ b/md/UBERON/24/UBERON_3010424.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010524.md b/md/UBERON/24/UBERON_3010524.md index 8ba90a0812..74e418aea3 100644 --- a/md/UBERON/24/UBERON_3010524.md +++ b/md/UBERON/24/UBERON_3010524.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010524 * *Label* = bronchial tube - * *Definition* = Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Either of the short tubes which bifurcate posteriorly from the trachea and lead into the lungs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010624.md b/md/UBERON/24/UBERON_3010624.md index ac5f801b3f..b7c7030797 100644 --- a/md/UBERON/24/UBERON_3010624.md +++ b/md/UBERON/24/UBERON_3010624.md @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010724.md b/md/UBERON/24/UBERON_3010724.md index 4adf658e23..6635ea969d 100644 --- a/md/UBERON/24/UBERON_3010724.md +++ b/md/UBERON/24/UBERON_3010724.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010724 * *Label* = levator quadrati - * *Definition* = Responsible for the closing of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Responsible for the closing of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_3010824.md b/md/UBERON/24/UBERON_3010824.md index c8dd2f1292..9d18430870 100644 --- a/md/UBERON/24/UBERON_3010824.md +++ b/md/UBERON/24/UBERON_3010824.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_4000024.md b/md/UBERON/24/UBERON_4000024.md index c088f3628b..57a292f4a4 100644 --- a/md/UBERON/24/UBERON_4000024.md +++ b/md/UBERON/24/UBERON_4000024.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000024 * *Label* = obsolete intercalar - * *Definition* = Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Term resides in TAO. ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:2000474 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_4200024.md b/md/UBERON/24/UBERON_4200024.md index c1ae4a1a7d..f753c1798d 100644 --- a/md/UBERON/24/UBERON_4200024.md +++ b/md/UBERON/24/UBERON_4200024.md @@ -28,8 +28,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/24/UBERON_4200124.md b/md/UBERON/24/UBERON_4200124.md index fe851b0b77..07ce1773f1 100644 --- a/md/UBERON/24/UBERON_4200124.md +++ b/md/UBERON/24/UBERON_4200124.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/24/UBERON_4300024.md b/md/UBERON/24/UBERON_4300024.md index 9b88e87cdb..6b7200831a 100644 --- a/md/UBERON/24/UBERON_4300024.md +++ b/md/UBERON/24/UBERON_4300024.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300024 * *Label* = spinal plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0000025.md b/md/UBERON/25/UBERON_0000025.md index d30a260a38..ff802fa62d 100644 --- a/md/UBERON/25/UBERON_0000025.md +++ b/md/UBERON/25/UBERON_0000025.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000025 * *Label* = tube - * *Definition* = Any hollow cylindrical anatomical structure containing a lumen through which substances are transported. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Any hollow cylindrical anatomical structure containing a lumen through which substances are transported. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical conduit](../../UBERON/11/UBERON_0004111.md) and [has_quality](../../SIO/08/SIO_000008.md) some [cylindrical](../../PATO/73/PATO_0001873.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = tubular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0000125.md b/md/UBERON/25/UBERON_0000125.md index ae1157211b..bdd43491b2 100644 --- a/md/UBERON/25/UBERON_0000125.md +++ b/md/UBERON/25/UBERON_0000125.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000125 * *Label* = neural nucleus - * *Definition* = A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_28443] + * *Definition* = A spatially aggregated collection of nerve cell bodies in the CNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections, and including nearby cells that share the same cell type, chemical phenotype, and connections. (CUMBO) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_28443 ] * *Comment* = Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in "subcortical" because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in "relatively compact" and "distiguishable by histology" because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate. ## Synonyms * nervous system nucleus - * neuraxis nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83686] - * neuronal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000136] - * nucleus of CNS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_28443] + * neuraxis nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83686 ] + * neuronal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000136 ] + * nucleus of CNS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_28443 ] * nucleus * nucleus of neuraxis @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure consisting of a discrete aggregate of neuronal soma[GO][GO_REF:0000021]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0000325.md b/md/UBERON/25/UBERON_0000325.md index c022c971db..a64c3199b3 100644 --- a/md/UBERON/25/UBERON_0000325.md +++ b/md/UBERON/25/UBERON_0000325.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0000925.md b/md/UBERON/25/UBERON_0000925.md index 83ec01555a..67293ee04d 100644 --- a/md/UBERON/25/UBERON_0000925.md +++ b/md/UBERON/25/UBERON_0000925.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000925 * *Label* = endoderm - * *Definition* = Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endoderm] + * *Definition* = Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endoderm ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -28,7 +28,7 @@ * MIAA:0000175 * SCTID:362855003 * TAO:0000017 - * UMLS:C0014144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endoderm] + * UMLS:C0014144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endoderm ] * VHOG:0000154 * Wikipedia:Endoderm * XAO:0000090 @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The Bilateria are triploblastic (with true endoderm, mesoderm, and ectoderm) (...).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endodermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001025.md b/md/UBERON/25/UBERON_0001025.md index 6c078ec935..d35402a3ce 100644 --- a/md/UBERON/25/UBERON_0001025.md +++ b/md/UBERON/25/UBERON_0001025.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001025 * *Label* = obsolete synapse - * *Definition* = The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synapse[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synapse, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = Made obsolete as it was equivalent to GO class ## Synonyms @@ -39,9 +39,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = SCTID:362298009 * *[consider](../../er/oboInOwl#consider.md)* = UMLS:C0039062 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Synapse - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001025 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/25/UBERON_0001125.md b/md/UBERON/25/UBERON_0001125.md index d932c0af2c..61792e74f5 100644 --- a/md/UBERON/25/UBERON_0001125.md +++ b/md/UBERON/25/UBERON_0001125.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001125 * *Label* = serratus ventralis - * *Definition* = The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serratus_anterior_muscle] + * *Definition* = The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serratus_anterior_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Boxer's muscle - * serratus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000679] + * serratus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000679 ] * serratus anterior muscle * serratus ventralis muscle - * musculus serratus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serratus_anterior_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * serratus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serratus_anterior_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus serratus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serratus_anterior_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * serratus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serratus_anterior_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0002378 * OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA * SCTID:181748003 - * UMLS:C1710059 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Serratus_Ventralis] + * UMLS:C1710059 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Serratus_Ventralis ] * VHOG:0000679 * Wikipedia:Serratus_anterior_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png @@ -54,8 +54,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001225.md b/md/UBERON/25/UBERON_0001225.md index 23523f374b..baa40e53db 100644 --- a/md/UBERON/25/UBERON_0001225.md +++ b/md/UBERON/25/UBERON_0001225.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001225 * *Label* = cortex of kidney - * *Definition* = Region of parenchyma of kidney representing the outer portion.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_cortex] + * *Definition* = Region of parenchyma of kidney representing the outer portion.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_cortex ] ## Synonyms - * cortex renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15581[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cortex renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15581, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * kidney cortex * renal cortex @@ -21,7 +21,7 @@ * MA:0000372 * MESH:A05.810.453.324 * SCTID:362211004 - * UMLS:C0022655 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Cortex] + * UMLS:C0022655 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Cortex ] * Wikipedia:Renal_cortex * galen:CortexOfKidney * http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001325.md b/md/UBERON/25/UBERON_0001325.md index 02c2281ffa..5963babd16 100644 --- a/md/UBERON/25/UBERON_0001325.md +++ b/md/UBERON/25/UBERON_0001325.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001325 * *Label* = muscle of pelvis - * *Definition* = Muscle (organ) which is a part of the pelvis. Examples: levator ani, [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19086] + * *Definition* = Muscle (organ) which is a part of the pelvis. Examples: levator ani, [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19086 ] ## Synonyms - * muscle organ of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19086] + * muscle organ of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19086 ] * pelvis muscle - * pelvis muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pelvis muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001425.md b/md/UBERON/25/UBERON_0001425.md index 23d4dbb497..8befa17cde 100644 --- a/md/UBERON/25/UBERON_0001425.md +++ b/md/UBERON/25/UBERON_0001425.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001525.md b/md/UBERON/25/UBERON_0001525.md index b1b2fb865f..4d74a2b53a 100644 --- a/md/UBERON/25/UBERON_0001525.md +++ b/md/UBERON/25/UBERON_0001525.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001525 * *Label* = extensor carpi radialis brevis muscle - * *Definition* = The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_carpi_radialis_brevis_muscle] + * *Definition* = The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_carpi_radialis_brevis_muscle ] ## Synonyms - * extensor carpi radialis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002290] - * musculus extensor carpi radialis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_carpi_radialis_brevis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extensor carpi radialis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002290 ] + * musculus extensor carpi radialis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_carpi_radialis_brevis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:38497 * MA:0002290 * SCTID:244991001 - * UMLS:C0224267 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Carpi_Radialis_Brevis] + * UMLS:C0224267 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Carpi_Radialis_Brevis ] * Wikipedia:Extensor_carpi_radialis_brevis_muscle * ncithesaurus:Extensor_Carpi_Radialis_Brevis @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001625.md b/md/UBERON/25/UBERON_0001625.md index f079c45d7e..bafbca3de5 100644 --- a/md/UBERON/25/UBERON_0001625.md +++ b/md/UBERON/25/UBERON_0001625.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001625 * *Label* = right coronary artery - * *Definition* = Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_coronary_artery] + * *Definition* = Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_coronary_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * right coronary arterial tree - * arteria coronaria dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_coronary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria coronaria dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_coronary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:50039 * MA:0002455 * SCTID:362037006 - * UMLS:C1261316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Coronary_Artery] + * UMLS:C1261316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Coronary_Artery ] * Wikipedia:Right_coronary_artery * http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001725.md b/md/UBERON/25/UBERON_0001725.md index e5da70f5c5..49fcc8b101 100644 --- a/md/UBERON/25/UBERON_0001725.md +++ b/md/UBERON/25/UBERON_0001725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001725 * *Label* = cranial synchondrosis - * *Definition* = the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=87514] + * *Definition* = the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=87514 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [skull](../../UBERON/29/UBERON_0003129.md) and [synchondrosis](../../UBERON/15/UBERON_0002215.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001825.md b/md/UBERON/25/UBERON_0001825.md index 04f264d44a..90e6328a94 100644 --- a/md/UBERON/25/UBERON_0001825.md +++ b/md/UBERON/25/UBERON_0001825.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001825 * *Label* = paranasal sinus - * *Definition* = Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paranasal_sinuses] + * *Definition* = Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paranasal_sinuses ] * *Comment* = Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally ## Synonyms * sinus - * nasal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:355] + * nasal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:355 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0000431 * MESH:A04.531.621 * SCTID:181203001 - * UMLS:C0030471 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paranasal_Sinus] + * UMLS:C0030471 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paranasal_Sinus ] * Wikipedia:Paranasal_sinuses * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png * ncithesaurus:Paranasal_Sinus @@ -46,8 +46,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76587 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0001925.md b/md/UBERON/25/UBERON_0001925.md index 599fc5d9d4..382258e4db 100644 --- a/md/UBERON/25/UBERON_0001925.md +++ b/md/UBERON/25/UBERON_0001925.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001925 * *Label* = ventral lateral nucleus - * *Definition* = The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_lateral_nucleus] + * *Definition* = The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_lateral_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * lateral ventral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62186] - * nuclei ventrales laterales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * nucleus ventralis intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * nucleus ventralis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * nucleus ventralis lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * nucleus ventralis thalami lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * nucleus ventrolateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * ventral lateral complex of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62186] - * ventral lateral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62186] - * ventral lateral thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62186] - * ventral lateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1237] - * ventrolateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62186] - * VL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1237[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral-ventral nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VTh] - * nuclei ventrales laterales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002463] - * ventral lateral nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002463] - * ventrolateral complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VL] + * lateral ventral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62186 ] + * nuclei ventrales laterales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * nucleus ventralis intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * nucleus ventralis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * nucleus ventralis lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * nucleus ventralis thalami lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * nucleus ventrolateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * ventral lateral complex of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62186 ] + * ventral lateral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62186 ] + * ventral lateral thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62186 ] + * ventral lateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1237 ] + * ventrolateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62186 ] + * VL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1237, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral-ventral nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VTh ] + * nuclei ventrales laterales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002463 ] + * ventral lateral nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002463 ] + * ventrolateral complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VL ] ## Cross-references @@ -34,11 +34,11 @@ * BTO:0002463 * FMA:62186 * NIF_GrossAnatomy:birnlex_1237 - * NeuroNames:337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1237] + * NeuroNames:337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1237 ] * SCTID:279146001 * TAO:0000306 - * UMLS:C0228339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1237] - * UMLS:C0228339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus] + * UMLS:C0228339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1237 ] + * UMLS:C0228339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus ] * Wikipedia:Ventral_lateral_nucleus * ZFA:0000306 * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png @@ -64,8 +64,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002025.md b/md/UBERON/25/UBERON_0002025.md index 1ccc9c66fa..9215792c87 100644 --- a/md/UBERON/25/UBERON_0002025.md +++ b/md/UBERON/25/UBERON_0002025.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002025 * *Label* = stratum basale of epidermis - * *Definition* = Deepest layer of the layers of the epidermis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_germinativum] + * *Definition* = Deepest layer of the layers of the epidermis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_germinativum ] * *Comment* = consisting of non-keratinized, viable cells, in contrast to the outer (upper) layer of epidermis made up of keratinized, anucleated, non-viable cells ## Synonyms - * basal cell layer of epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67540] - * epidermal basal stratum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001180] + * basal cell layer of epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67540 ] + * epidermal basal stratum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001180 ] * epidermis stratum basale * rete Malphighii * stratum Malphighi * stratum basalis of epidermis * stratum germinativum * stratum basale - * Malpighian layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000438] + * Malpighian layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000438 ] * basal cell layer of skin * epidermis basal layer * epidermis stratum germinativum @@ -30,7 +30,7 @@ * MA:0000803 * SCTID:419481005 * TAO:0001180 - * UMLS:C0221925 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Basale] + * UMLS:C0221925 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Basale ] * Wikipedia:Stratum_germinativum * XAO:0000041 * ZFA:0001180 @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002125.md b/md/UBERON/25/UBERON_0002125.md index 0730b45512..a1075ba1ef 100644 --- a/md/UBERON/25/UBERON_0002125.md +++ b/md/UBERON/25/UBERON_0002125.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002125 * *Label* = lobule of thymus - * *Definition* = the basic structural unit of the thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002367] + * *Definition* = the basic structural unit of the thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002367 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * thymic lobule - * thymus lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000770] + * thymus lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000770 ] ## Cross-references * FMA:72215 * MA:0000770 * SCTID:187882006 - * UMLS:C1522462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Lobule] + * UMLS:C1522462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Lobule ] * ncithesaurus:Thymic_Lobule ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002225.md b/md/UBERON/25/UBERON_0002225.md index e11a6b2483..c8e848a554 100644 --- a/md/UBERON/25/UBERON_0002225.md +++ b/md/UBERON/25/UBERON_0002225.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002225 * *Label* = costal arch - * *Definition* = The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_margin] + * *Definition* = The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs, which in humans is from the eighth rib to the tenth rib. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_margin ] * *Comment* = AO notes: we treat margin and arch in FMA as equivalent here, as a temporary measure. This may be split in future. We follow MA in making this a part of the rib. ## Synonyms - * arcus costae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_margin] - * arcus costalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_margin[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * costal margin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_margin] - * subcostal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_margin] + * arcus costae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_margin ] + * arcus costalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_margin, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * costal margin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_margin ] + * subcostal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_margin ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:7570 * MA:0001396 * SCTID:367767002 - * UMLS:C0230143 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Costal_Arch] + * UMLS:C0230143 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Costal_Arch ] * Wikipedia:Costal_margin * http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png * ncithesaurus:Costal_Arch @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002325.md b/md/UBERON/25/UBERON_0002325.md index 5543078363..97337540bf 100644 --- a/md/UBERON/25/UBERON_0002325.md +++ b/md/UBERON/25/UBERON_0002325.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002325 * *Label* = epithelium of urethra - * *Definition* = The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061071] + * *Definition* = The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061071 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urethra epithelium * urethral epithelium - * urethral plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:31518] - * urethral seam [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:31518] + * urethral plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:31518 ] + * urethral seam [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:31518 ] ## Cross-references * EMAPA:31518 * FMA:85275 * MA:0001686 - * UMLS:C1710584 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urethra_Epithelium] + * UMLS:C1710584 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urethra_Epithelium ] * ncithesaurus:Urethra_Epithelium ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002425.md b/md/UBERON/25/UBERON_0002425.md index 3452ad486e..39caf2f4c0 100644 --- a/md/UBERON/25/UBERON_0002425.md +++ b/md/UBERON/25/UBERON_0002425.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002425 * *Label* = visceral serous pericardium - * *Definition* = Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_pericardium] + * *Definition* = Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_pericardium ] ## Synonyms @@ -11,8 +11,8 @@ * visceral lamina of serous pericardium * visceral layer of serous pericardium * visceral pericardium - * epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000484] - * lamina visceralis pericardii serosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicardium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000484 ] + * lamina visceralis pericardii serosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicardium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002525.md b/md/UBERON/25/UBERON_0002525.md index e5336aa71c..7b7ca685a0 100644 --- a/md/UBERON/25/UBERON_0002525.md +++ b/md/UBERON/25/UBERON_0002525.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002525 * *Label* = brachial lymph node - * *Definition* = the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005231[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_lymph_nodes] + * *Definition* = the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005231, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_lymph_nodes ] ## Synonyms - * nodi lymphoidei brachiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_lymph_nodes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nodi lymphoidei brachiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_lymph_nodes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:44314 * MA:0002878 - * UMLS:C0229840 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brachial_Lymph_Node] + * UMLS:C0229840 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brachial_Lymph_Node ] * Wikipedia:Brachial_lymph_nodes * http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002625.md b/md/UBERON/25/UBERON_0002625.md index b735360874..032d4865f6 100644 --- a/md/UBERON/25/UBERON_0002625.md +++ b/md/UBERON/25/UBERON_0002625.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002625 * *Label* = median preoptic nucleus - * *Definition* = The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preoptic_area#Median_preoptic_nucleus] + * *Definition* = The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preoptic_area#Median_preoptic_nucleus ] ## Synonyms - * MnPO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1208[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * median preoptic nucleus (Loo) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:378] - * nucleus praeopticus medianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:378[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus preopticus medianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:378[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periventricular nucleus, preventricular portion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:378] + * MnPO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1208, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * median preoptic nucleus (Loo) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:378 ] + * nucleus praeopticus medianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:378, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus preopticus medianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:378, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periventricular nucleus, preventricular portion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:378 ] ## Cross-references @@ -21,8 +21,8 @@ * BM:MPO * FMA:62323 * NIF_GrossAnatomy:birnlex_1208 - * NeuroNames:378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1208] - * UMLS:C0259793 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1208] + * NeuroNames:378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1208 ] + * UMLS:C0259793 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1208 ] * Wikipedia:Preoptic_area#Median_preoptic_nucleus ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002825.md b/md/UBERON/25/UBERON_0002825.md index 0bc41cfe06..00dc0d8676 100644 --- a/md/UBERON/25/UBERON_0002825.md +++ b/md/UBERON/25/UBERON_0002825.md @@ -6,15 +6,15 @@ ## Synonyms - * vestibular ganglion superior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002778] - * pars superior vestibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002778] + * vestibular ganglion superior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002778 ] + * pars superior vestibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002778 ] ## Cross-references * FMA:77531 * MA:0002778 * NIF_GrossAnatomy:birnlex_2551 - * UMLS:C1186166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2551] + * UMLS:C1186166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2551 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0002925.md b/md/UBERON/25/UBERON_0002925.md index 25aed49d52..7660f703b8 100644 --- a/md/UBERON/25/UBERON_0002925.md +++ b/md/UBERON/25/UBERON_0002925.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002925 * *Label* = trigeminal nucleus - * *Definition* = A nucleus of brain that is part of a trigeminal nuclear complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a trigeminal nuclear complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note massive inconsistencies between GO, MA, wikipedia. Part of pons in MA, but this leads to inconsistencies with ABA. See https://sourceforge.net/tracker/?func=detail&aid=3291162&group_id=76834&atid=1205376 ## Synonyms - * nucleus of trigeminal nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71247] - * trigeminal V nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001028] - * trigeminal nuclear complex nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71247] - * trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71248] - * nucleus mesencephalicus nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001074] - * nucleus mesencephalicus trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001074] - * nucleus tractus mesencephali nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001074] + * nucleus of trigeminal nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71247 ] + * trigeminal V nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001028 ] + * trigeminal nuclear complex nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71247 ] + * trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71248 ] + * nucleus mesencephalicus nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001074 ] + * nucleus mesencephalicus trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001074 ] + * nucleus tractus mesencephali nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001074 ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A08.186.211.132.931 * NIF_GrossAnatomy:nifext_11 * SCTID:280164007 - * UMLS:C0040999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trigeminal_Nucleus] + * UMLS:C0040999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trigeminal_Nucleus ] * VHOG:0001353 * ncithesaurus:Trigeminal_Nucleus @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trigeminal nuclear complex](../../UBERON/41/UBERON_0007641.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003025.md b/md/UBERON/25/UBERON_0003025.md index 8b05069de5..5be3c27907 100644 --- a/md/UBERON/25/UBERON_0003025.md +++ b/md/UBERON/25/UBERON_0003025.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003025 * *Label* = brachium of inferior colliculus - * *Definition* = The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachium_of_inferior_colliculus] + * *Definition* = The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachium_of_inferior_colliculus ] ## Synonyms - * brachium of medial geniculate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * inferior brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * inferior collicular brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * inferior colliculus brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * inferior quadrigeminal brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * peduncle of inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71114] - * brachium colliculi caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:480[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brachium colliculi inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachium_of_inferior_colliculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brachium of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:480] - * brachium quadrigeminum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:480[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the brachium of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BIC] + * brachium of medial geniculate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * inferior brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * inferior collicular brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * inferior colliculus brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * inferior quadrigeminal brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * peduncle of inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71114 ] + * brachium colliculi caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:480, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brachium colliculi inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachium_of_inferior_colliculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brachium of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:480 ] + * brachium quadrigeminum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:480, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the brachium of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BIC ] ## Cross-references @@ -26,8 +26,8 @@ * BM:MB-BSC * FMA:71114 * NIF_GrossAnatomy:birnlex_929 - * NeuroNames:480 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_929] - * UMLS:C0175372 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_929] + * NeuroNames:480 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_929 ] + * UMLS:C0175372 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_929 ] * Wikipedia:Brachium_of_inferior_colliculus * http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003125.md b/md/UBERON/25/UBERON_0003125.md index 67fa14bcf1..eb17e0aadb 100644 --- a/md/UBERON/25/UBERON_0003125.md +++ b/md/UBERON/25/UBERON_0003125.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003125 * *Label* = vitelline membrane - * *Definition* = a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_membrane] + * *Definition* = a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_membrane ] * *Comment* = TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization ## Synonyms - * zona pellucida - vitelline membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000720] - * m. vitellina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * yolk sac membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001450] + * zona pellucida - vitelline membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000720 ] + * m. vitellina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * yolk sac membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001450 ] * zona pellucida ## Cross-references @@ -45,8 +45,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of zygote (AAO:0010324)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003325.md b/md/UBERON/25/UBERON_0003325.md index 852fc31f6e..df61fd92bd 100644 --- a/md/UBERON/25/UBERON_0003325.md +++ b/md/UBERON/25/UBERON_0003325.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003325 * *Label* = mesenchyme of pinna - * *Definition* = Mesenchyme that is part of a pinna [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pinna [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * auricle mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricle of ear mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricle of external ear mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricula (auris externa) mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricula mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of auricle of ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of auricle of external ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of auricula (auris externa) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of auricula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of pinna of ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pinna mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pinna of ear mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * auricle mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricle of ear mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricle of external ear mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricula (auris externa) mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricula mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of auricle of ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of auricle of external ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of auricula (auris externa) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of auricula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of pinna of ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pinna mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pinna of ear mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pinna](../../UBERON/57/UBERON_0001757.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003425.md b/md/UBERON/25/UBERON_0003425.md index 9969af5c40..106451598b 100644 --- a/md/UBERON/25/UBERON_0003425.md +++ b/md/UBERON/25/UBERON_0003425.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003425 * *Label* = renal lymph node - * *Definition* = A lymph node that is part of a kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymph node that is part of a kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph node of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * kidney lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph node of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002882 - * UMLS:C2699031 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Lymph_Node] + * UMLS:C2699031 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Lymph_Node ] * ncithesaurus:Renal_Lymph_Node ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003625.md b/md/UBERON/25/UBERON_0003625.md index 6e9e962aae..797eee38e0 100644 --- a/md/UBERON/25/UBERON_0003625.md +++ b/md/UBERON/25/UBERON_0003625.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003625 * *Label* = manual digit 5 - * *Definition* = 5th digit of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Little_finger] + * *Definition* = 5th digit of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Little_finger ] ## Synonyms * 5th digit of hand * 5th finger - * digit 5 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17441] - * fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24949] + * digit 5 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17441 ] + * fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24949 ] * fifth finger - * finger 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000535] - * fore digit V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010643] - * fore limb digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000458] - * hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * finger 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000535 ] + * fore digit V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010643 ] + * fore limb digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000458 ] + * hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * little finger - * manual digitus V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Little_finger[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * manual digitus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Little_finger[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * manual digitus V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Little_finger, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * manual digitus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Little_finger, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * manus digiti minimi - * manus quintus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Little_finger[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * manus quintus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Little_finger, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:24949 * MA:0000458 * SCTID:362773007 - * UMLS:C0230403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_5] + * UMLS:C0230403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_5 ] * Wikipedia:Little_finger * http://upload.wikimedia.org/wikipedia/commons/e/ed/Pink.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 5](../../UBERON/52/UBERON_0006052.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003725.md b/md/UBERON/25/UBERON_0003725.md index 77116ca29f..39c139daec 100644 --- a/md/UBERON/25/UBERON_0003725.md +++ b/md/UBERON/25/UBERON_0003725.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003725 * *Label* = cervical plexus - * *Definition* = The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_plexus] + * *Definition* = The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_plexus ] ## Synonyms - * cervical nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5904] - * cervical plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5904] - * plexus cervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5904[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus cervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cervical nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5904 ] + * cervical plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5904 ] + * plexus cervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5904, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus cervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003825.md b/md/UBERON/25/UBERON_0003825.md index 80bba626af..51c438deba 100644 --- a/md/UBERON/25/UBERON_0003825.md +++ b/md/UBERON/25/UBERON_0003825.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003825 * *Label* = nerve of abdominal segment - * *Definition* = A nerve that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000528] + * abdominal segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000528 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0003925.md b/md/UBERON/25/UBERON_0003925.md index 5eefae07f8..86d44e2870 100644 --- a/md/UBERON/25/UBERON_0003925.md +++ b/md/UBERON/25/UBERON_0003925.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003925 * *Label* = photoreceptor inner segment layer - * *Definition* = Layer of the retina composed of the inner segments of the photoreceptor cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Layer of the retina composed of the inner segments of the photoreceptor cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * retina photoreceptor layer inner segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002471] + * retina photoreceptor layer inner segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002471 ] ## Cross-references @@ -38,8 +38,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004025.md b/md/UBERON/25/UBERON_0004025.md index 4c47dc56ce..46f2cea609 100644 --- a/md/UBERON/25/UBERON_0004025.md +++ b/md/UBERON/25/UBERON_0004025.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004025 * *Label* = lateral ganglionic eminence - * *Definition* = a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004277] + * *Definition* = a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004277 ] ## Synonyms - * LGE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * LGE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004125.md b/md/UBERON/25/UBERON_0004125.md index 4407ccf3b1..c912846503 100644 --- a/md/UBERON/25/UBERON_0004125.md +++ b/md/UBERON/25/UBERON_0004125.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004125 * *Label* = myocardial compact layer - * *Definition* = outer dense layer of the myocardium uniting the epicardium and myocardium[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004056] + * *Definition* = outer dense layer of the myocardium uniting the epicardium and myocardium[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004056 ] ## Synonyms - * myocardium compact layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002865] + * myocardium compact layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002865 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004225.md b/md/UBERON/25/UBERON_0004225.md index 338b5789ab..59bf1c4588 100644 --- a/md/UBERON/25/UBERON_0004225.md +++ b/md/UBERON/25/UBERON_0004225.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004225 * *Label* = respiratory system smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001660] - * respiratory system involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * airway smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001660] - * airway smooth muscle cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001660] + * apparatus respiratorius involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001660 ] + * respiratory system involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * airway smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001660 ] + * airway smooth muscle cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001660 ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004325.md b/md/UBERON/25/UBERON_0004325.md index f95dd25915..21bb1fc26d 100644 --- a/md/UBERON/25/UBERON_0004325.md +++ b/md/UBERON/25/UBERON_0004325.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004325 * *Label* = middle phalanx of pedal digit 3 - * *Definition* = A middle phalanx that is part of a foot digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a foot digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd toe intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd toe middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb digit III P2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * intermediate phalanx of 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of the 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32624] - * middle phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32624] - * third middle phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32624] - * hindlimb short pastern bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * 3rd toe intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd toe middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb digit III P2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * intermediate phalanx of 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of the 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32624 ] + * middle phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32624 ] + * third middle phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32624 ] + * hindlimb short pastern bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004425.md b/md/UBERON/25/UBERON_0004425.md index 903af1a329..7d58f065eb 100644 --- a/md/UBERON/25/UBERON_0004425.md +++ b/md/UBERON/25/UBERON_0004425.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004425 * *Label* = proximal epiphysis of fourth metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of fourth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42797] - * fourth metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42797] - * proximal end of fourth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42797] + * base of fourth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42797 ] + * fourth metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42797 ] + * proximal end of fourth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42797 ] * proximal epiphysis of metacarpal 4 ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 4](../../UBERON/48/UBERON_0003648.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004525.md b/md/UBERON/25/UBERON_0004525.md index f5e59a61e2..79ded1cc94 100644 --- a/md/UBERON/25/UBERON_0004525.md +++ b/md/UBERON/25/UBERON_0004525.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004525 * *Label* = cardiac muscle tissue of trabecula carnea of right ventricle - * *Definition* = A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) and [trabecula carnea cardiac muscle tissue](../../UBERON/52/UBERON_0003452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004625.md b/md/UBERON/25/UBERON_0004625.md index d32fe0df9f..4dc3680f90 100644 --- a/md/UBERON/25/UBERON_0004625.md +++ b/md/UBERON/25/UBERON_0004625.md @@ -7,10 +7,10 @@ ## Synonyms - * Fourth sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13080] - * Fourth segment of sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13080] - * S4 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13080] - * fourth sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13080] + * Fourth sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13080 ] + * Fourth segment of sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13080 ] + * S4 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13080 ] + * fourth sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13080 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:13080 * MA:0001437 * SCTID:181849002 - * UMLS:C0223601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:S4_Vertebra] + * UMLS:C0223601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:S4_Vertebra ] * ncithesaurus:S4_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004725.md b/md/UBERON/25/UBERON_0004725.md index 679edacb33..fd118445b8 100644 --- a/md/UBERON/25/UBERON_0004725.md +++ b/md/UBERON/25/UBERON_0004725.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004725 * *Label* = piriform cortex - * *Definition* = In anatomy of animals, the piriform cortex, or pyriform cortex is a region in the brain. The piriform cortex is part of the rhinencephalon situated in the telencephalon. The function of the piriform cortex relates to olfaction, which is the perception of smells. Sometimes called the olfactory cortex, olfactory lobe or paleopallium, piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion. It is Brodmann area 27. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex] + * *Definition* = In anatomy of animals, the piriform cortex, or pyriform cortex is a region in the brain. The piriform cortex is part of the rhinencephalon situated in the telencephalon. The function of the piriform cortex relates to olfaction, which is the perception of smells. Sometimes called the olfactory cortex, olfactory lobe or paleopallium, piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion. It is Brodmann area 27. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex ] ## Synonyms - * primary olfactory areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2706] - * area prepiriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortex piriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eupalaeocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olfactory pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * palaeocortex II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paleopallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex] - * parainsular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PIR] - * piriform area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002651[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000978] - * piriform lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002651] - * primary olfactory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * pyriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex] - * pyriform lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriform_cortex] - * regio praepiriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * primary olfactory areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2706 ] + * area prepiriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortex piriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eupalaeocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olfactory pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * palaeocortex II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paleopallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex ] + * parainsular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PIR ] + * piriform area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002651, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000978 ] + * piriform lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002651 ] + * primary olfactory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * pyriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex ] + * pyriform lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriform_cortex ] + * regio praepiriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,9 +31,9 @@ * EV:0100178 * MA:0000978 * NIF_GrossAnatomy:birnlex_1097 - * NeuroNames:165 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1097] + * NeuroNames:165 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1097 ] * SCTID:369098004 - * UMLS:C0228280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1097] + * UMLS:C0228280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1097 ] * Wikipedia:Piriform_cortex * http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004825.md b/md/UBERON/25/UBERON_0004825.md index 0371120ceb..fa9b9e5733 100644 --- a/md/UBERON/25/UBERON_0004825.md +++ b/md/UBERON/25/UBERON_0004825.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004825 * *Label* = dental lamina - * *Definition* = a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the progenitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the odontogenic papilla and later odontoblasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_lamina] + * *Definition* = a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the progenitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the odontogenic papilla and later odontoblasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_lamina ] * *Comment* = Homology notes: In the epidermis of embryonic birds, there remains a transient thickening that is comparable to the early formation of the dental lamina in the mouse[PMID:10954731]. AO notes: check MA placement, this structure is the developing structure ## Synonyms * embryonic dental lamina - * lamina dentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_lamina[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina dentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_lamina, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0004925.md b/md/UBERON/25/UBERON_0004925.md index 1dd996d901..32917e023e 100644 --- a/md/UBERON/25/UBERON_0004925.md +++ b/md/UBERON/25/UBERON_0004925.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004925 * *Label* = submucosa of laryngopharynx - * *Definition* = A submucosa that is part of a hypopharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a hypopharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hypopharynx submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal pharynx submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngopharynx submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of hypopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tela submucosa (pars laryngea pharyngis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55072] + * hypopharynx submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal pharynx submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngopharynx submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of hypopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tela submucosa (pars laryngea pharyngis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55072 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypopharynx](../../UBERON/51/UBERON_0001051.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005025.md b/md/UBERON/25/UBERON_0005025.md index 4fcbc77df2..11addca50f 100644 --- a/md/UBERON/25/UBERON_0005025.md +++ b/md/UBERON/25/UBERON_0005025.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005025 * *Label* = mucosa of uvula - * *Definition* = A mucosa that is part of a uvula [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a uvula [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * uvula mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60030] + * uvula mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60030 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [palatine uvula](../../UBERON/34/UBERON_0001734.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005125.md b/md/UBERON/25/UBERON_0005125.md index ba1b93e0e5..316a0abcd4 100644 --- a/md/UBERON/25/UBERON_0005125.md +++ b/md/UBERON/25/UBERON_0005125.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005125 * *Label* = metanephric proximal straight tubule - * *Definition* = The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072230] + * *Definition* = The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072230 ] * *Comment* = todo - place mammalian xrefs here rather than at parent ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [proximal straight tubule](../../UBERON/90/UBERON_0001290.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005225.md b/md/UBERON/25/UBERON_0005225.md index ef47f296d9..9b84ede8a4 100644 --- a/md/UBERON/25/UBERON_0005225.md +++ b/md/UBERON/25/UBERON_0005225.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005225 * *Label* = upper leg epithelium - * *Definition* = An epithelium that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005325.md b/md/UBERON/25/UBERON_0005325.md index 9ec6e7a3da..e0926637a9 100644 --- a/md/UBERON/25/UBERON_0005325.md +++ b/md/UBERON/25/UBERON_0005325.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005325 * *Label* = mesonephric glomerulus - * *Definition* = The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061224] + * *Definition* = The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061224 ] * *Comment* = AN notes: XAO/AAO class belongs here, as it refers to mesonephric structure ## Synonyms - * glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010388[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010388, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In animals in which the mesonephros is the terminal kidney, such as amphibians and fish, the final organ is very complex, containing a large number of nephrons, most of which have an internal glomerulus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005425.md b/md/UBERON/25/UBERON_0005425.md index 9439b8b0a8..467a102224 100644 --- a/md/UBERON/25/UBERON_0005425.md +++ b/md/UBERON/25/UBERON_0005425.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005425 * *Label* = presumptive neural retina - * *Definition* = Portion of tissue that is the inner layer of the optic cup and will become the neural retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of tissue that is the inner layer of the optic cup and will become the neural retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * inner layer optic cup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001071] - * optic cup inner layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001304] - * presumptive retinas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001071[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * future neural epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16675] - * future neural layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16675] - * presumptive retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001071] + * inner layer optic cup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001071 ] + * optic cup inner layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001304 ] + * presumptive retinas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001071, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * future neural epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16675 ] + * future neural layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16675 ] + * presumptive retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001071 ] ## Cross-references @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005625.md b/md/UBERON/25/UBERON_0005625.md index 6da2f791b4..5ca8f70a42 100644 --- a/md/UBERON/25/UBERON_0005625.md +++ b/md/UBERON/25/UBERON_0005625.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005625 * *Label* = tubotympanic recess lumen - * *Definition* = The cavity formed by the tubotympanic recess epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The cavity formed by the tubotympanic recess epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * cavity of tubotympanic recess * tubotympanic recess cavity * tubotympanic recess space - * tubotympanic recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002095] + * tubotympanic recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002095 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [tubotympanic recess epithelium](../../UBERON/20/UBERON_0010020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005725.md b/md/UBERON/25/UBERON_0005725.md index 2961389eb1..b90f03dac6 100644 --- a/md/UBERON/25/UBERON_0005725.md +++ b/md/UBERON/25/UBERON_0005725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005725 * *Label* = olfactory system - * *Definition* = A sensory system that is capable of olfacttion (the sensory perception of smell). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A sensory system that is capable of olfacttion (the sensory perception of smell). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor // Editor note: consider splitting into main and accessory. See also: vomeronasal organ // note we make the relationship to nervous system 'overlaps', as the olfactory system includes e.g. apertures in the cranium that are not part of the nervous system ## Synonyms @@ -21,7 +21,7 @@ * OpenCyc:Mx4rvViw75wpEbGdrcN5Y29ycA * SCTID:362290002 * TAO:0001149 - * UMLS:C0228065 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_System] + * UMLS:C0228065 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_System ] * Wikipedia:Olfactory_system * XAO:0003196 * ZFA:0001149 @@ -35,12 +35,12 @@ ## Superclasses * [chemosensory system](../../UBERON/26/UBERON_0005726.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of smell](../../GO/08/GO_0007608.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of smell](../../GO/08/GO_0007608.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The olfactory system is the sensory system used for olfaction, or the sense of smell. Most mammals and reptiles have two distinct parts to their olfactory system: a main olfactory system and an accessory olfactory system. The main olfactory system detects volatile, airborne substances, while the accessory olfactory system senses fluid-phase stimuli. Behavioral evidence indicates that most often, the stimuli detected by the accessory olfactory system are pheromones. The olfactory system is often spoken of along with the gustatory system as the chemosensory senses because both transduce chemical signals into perception[WP][Wikipedia:Olfactory_system]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory system used for olfaction (the sense of smell).[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0005925.md b/md/UBERON/25/UBERON_0005925.md index 1b93f275ad..42955d97dc 100644 --- a/md/UBERON/25/UBERON_0005925.md +++ b/md/UBERON/25/UBERON_0005925.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005925 * *Label* = ethmoidal process of inferior nasal concha - * *Definition* = Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoid_boneal_process_of_inferior_nasal_concha] + * *Definition* = Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoid_boneal_process_of_inferior_nasal_concha ] ## Synonyms - * ethmoidal process of inferior concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54742] - * ethmoidal process of inferior nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54742] - * ethmoidal process of inferior turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54742] - * processus ethmoidalis (concha nasalis inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54742] - * processus ethmoidalis conchae nasalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54742[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus ethmoidalis conchae nasalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoidal_process_of_inferior_nasal_concha[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ethmoidal process of inferior concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54742 ] + * ethmoidal process of inferior nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54742 ] + * ethmoidal process of inferior turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54742 ] + * processus ethmoidalis (concha nasalis inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54742 ] + * processus ethmoidalis conchae nasalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54742, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus ethmoidalis conchae nasalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoidal_process_of_inferior_nasal_concha, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006025.md b/md/UBERON/25/UBERON_0006025.md index 6bc4f9dc4f..8efe83e11f 100644 --- a/md/UBERON/25/UBERON_0006025.md +++ b/md/UBERON/25/UBERON_0006025.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006025 * *Label* = interdigital region between digits 4 and 5 - * *Definition* = An interdigital region that adjacent_to a digit 4 and adjacent_to a digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a digit 4 and adjacent_to a digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) and [adjacent to](../../RO/20/RO_0002220.md) some [digit 5](../../UBERON/52/UBERON_0006052.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006125.md b/md/UBERON/25/UBERON_0006125.md index 6fed131260..3671207c9f 100644 --- a/md/UBERON/25/UBERON_0006125.md +++ b/md/UBERON/25/UBERON_0006125.md @@ -6,8 +6,8 @@ ## Synonyms - * diagonal band subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77610] - * regional part of diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090302] + * diagonal band subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77610 ] + * regional part of diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090302 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006325.md b/md/UBERON/25/UBERON_0006325.md index 843f9e6d39..d35f79f942 100644 --- a/md/UBERON/25/UBERON_0006325.md +++ b/md/UBERON/25/UBERON_0006325.md @@ -6,7 +6,7 @@ ## Synonyms - * intrinsic ligament of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72058] + * intrinsic ligament of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72058 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006525.md b/md/UBERON/25/UBERON_0006525.md index 7db164ca84..2a3c3a554a 100644 --- a/md/UBERON/25/UBERON_0006525.md +++ b/md/UBERON/25/UBERON_0006525.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006725.md b/md/UBERON/25/UBERON_0006725.md index ae4865a3a4..434e40c34c 100644 --- a/md/UBERON/25/UBERON_0006725.md +++ b/md/UBERON/25/UBERON_0006725.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006725 * *Label* = spiral ligament - * *Definition* = A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:MESH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_ligament[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3557974&group_id=76834] + * *Definition* = A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:MESH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_ligament, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3557974&group_id=76834 ] * *Comment* = Note that this is not classified as a ligament in FMA ## Synonyms - * ligamentum spirale ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spiral cochlear ligament [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spiral ligament of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77834] + * ligamentum spirale ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spiral cochlear ligament [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spiral ligament of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77834 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0006925.md b/md/UBERON/25/UBERON_0006925.md index dc77cfc14b..9efd341f00 100644 --- a/md/UBERON/25/UBERON_0006925.md +++ b/md/UBERON/25/UBERON_0006925.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006925 * *Label* = digestive gland - * *Definition* = A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.] + * *Definition* = A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000. ] ## Synonyms - * digestive system gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000130] + * digestive system gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000130 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocrine gland](../../UBERON/68/UBERON_0002368.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive system](../../UBERON/07/UBERON_0001007.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007125.md b/md/UBERON/25/UBERON_0007125.md index aaed2aea7f..c74523406d 100644 --- a/md/UBERON/25/UBERON_0007125.md +++ b/md/UBERON/25/UBERON_0007125.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007125 * *Label* = pharyngeal pouch 4 - * *Definition* = A pharyngeal pouch between pharyngeal arches 4 and 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16313389[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch] + * *Definition* = A pharyngeal pouch between pharyngeal arches 4 and 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16313389, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch ] * *Comment* = Development notes: Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP] ## Synonyms - * 4th arch branchial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000090] - * 4th arch branchial pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000091] + * 4th arch branchial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000090 ] + * 4th arch branchial pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000091 ] * 4th branchial pouch - * 4th pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000578] - * fourth arch pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000254] - * pharyngeal pouches 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * visceral pouch 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000254] - * fourth pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000971] + * 4th pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000578 ] + * fourth arch pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000254 ] + * pharyngeal pouches 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * visceral pouch 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000254 ] + * fourth pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000971 ] ## Cross-references @@ -27,7 +27,7 @@ * RETIRED_EHDAA2:0000090 * SCTID:362858001 * TAO:0001134 - * UMLS:C0231071 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fourth_Pharyngeal_Pouch] + * UMLS:C0231071 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fourth_Pharyngeal_Pouch ] * VHOG:0000578 * VHOG:0000971 * Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch @@ -43,12 +43,12 @@ ## Superclasses * [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) and [pharyngeal pouch](../../UBERON/17/UBERON_0004117.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fourth of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007225.md b/md/UBERON/25/UBERON_0007225.md index 566ebda934..f048c9c527 100644 --- a/md/UBERON/25/UBERON_0007225.md +++ b/md/UBERON/25/UBERON_0007225.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007225 * *Label* = lateral entorhinal cortex - * *Definition* = The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004347] + * *Definition* = The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004347 ] ## Synonyms - * Entorhinal area, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:ENTl] - * entorhinal cortex lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ENTl] + * Entorhinal area, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:ENTl ] + * entorhinal cortex lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ENTl ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007425.md b/md/UBERON/25/UBERON_0007425.md index 65bd4df1b2..be6d5fcbaa 100644 --- a/md/UBERON/25/UBERON_0007425.md +++ b/md/UBERON/25/UBERON_0007425.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007425 * *Label* = decussation of diencephalon - * *Definition* = A decussation of neuraxis that is part of a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A decussation of neuraxis that is part of a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalon decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62446] + * diencephalon decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62446 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [decussation of neuraxis](../../UBERON/18/UBERON_0007418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007625.md b/md/UBERON/25/UBERON_0007625.md index 30c7b7077b..b8de24e15b 100644 --- a/md/UBERON/25/UBERON_0007625.md +++ b/md/UBERON/25/UBERON_0007625.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007625 * *Label* = pigment epithelium of eye - * *Definition* = epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005200] + * *Definition* = epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005200 ] ## Synonyms - * eye pigment epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.371.670] + * eye pigment epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.371.670 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eye](../../UBERON/70/UBERON_0000970.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007725.md b/md/UBERON/25/UBERON_0007725.md index 4792f02212..64cb15b7e9 100644 --- a/md/UBERON/25/UBERON_0007725.md +++ b/md/UBERON/25/UBERON_0007725.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007725 * *Label* = interphalangeal joint of pedal digit 2 - * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35356] - * interphalangeal joint of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35356[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35356 ] + * interphalangeal joint of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35356, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of pes](../../UBERON/21/UBERON_0007721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0007825.md b/md/UBERON/25/UBERON_0007825.md index 03261d4f52..ba6eee9749 100644 --- a/md/UBERON/25/UBERON_0007825.md +++ b/md/UBERON/25/UBERON_0007825.md @@ -6,9 +6,9 @@ ## Synonyms - * reticular lamina of spiral organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of spiral organ of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001194] + * reticular lamina of spiral organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of spiral organ of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001194 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spiral organ of cochlea](../../UBERON/27/UBERON_0002227.md) and [reticular lamina of epithelium](../../UBERON/67/UBERON_0001967.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0008425.md b/md/UBERON/25/UBERON_0008425.md index c1f85f8dc4..040bf4d16d 100644 --- a/md/UBERON/25/UBERON_0008425.md +++ b/md/UBERON/25/UBERON_0008425.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008425 * *Label* = mammary ridge - * *Definition* = A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'and sometimes fourth nipplegrow along the milk line[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Milk_line[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dictionary.reference.com/browse/mammary%20ridge] + * *Definition* = A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'and sometimes fourth nipplegrow along the milk line[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Milk_line, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dictionary.reference.com/browse/mammary%20ridge ] * *Comment* = split ridge and milk line? ## Synonyms - * mammary fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dictionary.reference.com/browse/mammary+ridge] - * milk line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Milk_line] + * mammary fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dictionary.reference.com/browse/mammary+ridge ] + * milk line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Milk_line ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0008925.md b/md/UBERON/25/UBERON_0008925.md index 29075e0ad6..e054f8cc22 100644 --- a/md/UBERON/25/UBERON_0008925.md +++ b/md/UBERON/25/UBERON_0008925.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008925 * *Label* = sublaminar layer S4 - * *Definition* = A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) and [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) and [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0009025.md b/md/UBERON/25/UBERON_0009025.md index 0e6cf4b0e2..a7a60410f0 100644 --- a/md/UBERON/25/UBERON_0009025.md +++ b/md/UBERON/25/UBERON_0009025.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009025 * *Label* = gastroepiploic artery - * *Definition* = Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.231.114.379] + * *Definition* = Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.231.114.379 ] ## Synonyms @@ -13,7 +13,7 @@ * MA:0001962 * MESH:A07.231.114.379 * SCTID:261401008 - * UMLS:C0447070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastroepiploic_Artery] + * UMLS:C0447070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastroepiploic_Artery ] * ncithesaurus:Gastroepiploic_Artery ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0009125.md b/md/UBERON/25/UBERON_0009125.md index 3fd56bceb3..738f115f5d 100644 --- a/md/UBERON/25/UBERON_0009125.md +++ b/md/UBERON/25/UBERON_0009125.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009125 * *Label* = petrosal placode - * *Definition* = Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NBK:NBK53175] + * *Definition* = Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NBK:NBK53175 ] * *Comment* = Taxonomic equivalence to EHDAA2 class made on basis of shared development: gives rise to glossopharyngeal ganglion ## Synonyms - * epibranchial placode 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004207] - * glossopharyngeal IX placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * glossopharyngeal epibranchial placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004212] - * glossopharyngeal placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001296] + * epibranchial placode 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004207 ] + * glossopharyngeal IX placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * glossopharyngeal epibranchial placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004212 ] + * glossopharyngeal placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001296 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0009625.md b/md/UBERON/25/UBERON_0009625.md index 286189b1fa..64c9598252 100644 --- a/md/UBERON/25/UBERON_0009625.md +++ b/md/UBERON/25/UBERON_0009625.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009625 * *Label* = sacral nerve - * *Definition* = The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacral_nerves] + * *Definition* = The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacral_nerves ] ## Synonyms - * sacral spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5862] - * nervi sacrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacral_nerves[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sacral spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5862 ] + * nervi sacrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacral_nerves, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:5862 * NeuroNames:1720 * SCTID:361601003 - * UMLS:C0228922 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacral_Nerve] + * UMLS:C0228922 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacral_Nerve ] * Wikipedia:Sacral_nerves * http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png * ncithesaurus:Sacral_Nerve @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010025.md b/md/UBERON/25/UBERON_0010025.md index 256e213581..25f076623f 100644 --- a/md/UBERON/25/UBERON_0010025.md +++ b/md/UBERON/25/UBERON_0010025.md @@ -7,10 +7,10 @@ ## Synonyms - * dorsal 3rd arch pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000409] + * dorsal 3rd arch pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000409 ] * dorsal 3rd branchial pouch * dorsal pharyngeal pouch 3 - * dorsal wing of pharyngeal pouch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * dorsal wing of pharyngeal pouch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * dorsal branchial pouch 3 endoderm * dorsal pharyngeal pouch 3 endoderm @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010125.md b/md/UBERON/25/UBERON_0010125.md index 9c9063a2a5..cc47eb708e 100644 --- a/md/UBERON/25/UBERON_0010125.md +++ b/md/UBERON/25/UBERON_0010125.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010125 * *Label* = future superior salivatory nucleus - * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a superior salivatory nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a superior salivatory nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010225.md b/md/UBERON/25/UBERON_0010225.md index 3561a31c85..ddbbf5eb8c 100644 --- a/md/UBERON/25/UBERON_0010225.md +++ b/md/UBERON/25/UBERON_0010225.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010225 * *Label* = thalamic complex - * *Definition* = A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Thalamus#Thalamic_nuclei] + * *Definition* = A nuclear complex which in mammals consists of four parts, the hypothalamus, epithalamus, ventral thalamus, and dorsal thalamus[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Thalamus#Thalamic_nuclei ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010225 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010325.md b/md/UBERON/25/UBERON_0010325.md index 7056610ebe..4ec63c4a0d 100644 --- a/md/UBERON/25/UBERON_0010325.md +++ b/md/UBERON/25/UBERON_0010325.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010325 * *Label* = obsolete craniofacial skeleton - * *Definition* = Cranial skeleton derived from neural crest cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000082] + * *Definition* = Cranial skeleton derived from neural crest cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000082 ] ## Synonyms - * Cranio-facial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * Cranio-facial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -28,9 +28,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011156 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010325 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/25/UBERON_0010425.md b/md/UBERON/25/UBERON_0010425.md index 2d9a57dd2d..b026df1c04 100644 --- a/md/UBERON/25/UBERON_0010425.md +++ b/md/UBERON/25/UBERON_0010425.md @@ -29,8 +29,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = choanal * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76585 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010725.md b/md/UBERON/25/UBERON_0010725.md index 4747a0d211..6c8d240d37 100644 --- a/md/UBERON/25/UBERON_0010725.md +++ b/md/UBERON/25/UBERON_0010725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010725 * *Label* = accessory navicular bone - * *Definition* = an accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_navicular_bone] + * *Definition* = an accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_navicular_bone ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0010925.md b/md/UBERON/25/UBERON_0010925.md index 009d70ea83..32314bc968 100644 --- a/md/UBERON/25/UBERON_0010925.md +++ b/md/UBERON/25/UBERON_0010925.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010925 * *Label* = median thyrohyoid ligament - * *Definition* = The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_thyrohyoid_ligament] + * *Definition* = The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_thyrohyoid_ligament ] ## Synonyms * ligamentum thyrohyoideum medianum - * middle thyrohyoid ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55138] + * middle thyrohyoid ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55138 ] ## Cross-references * FMA:55138 * SCTID:279554008 - * UMLS:C0225535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Thyrohyoid_Ligament] + * UMLS:C0225535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Thyrohyoid_Ligament ] * Wikipedia:Median_thyrohyoid_ligament * ncithesaurus:Middle_Thyrohyoid_Ligament @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0011025.md b/md/UBERON/25/UBERON_0011025.md index 07b25c28d2..a4bc3b3617 100644 --- a/md/UBERON/25/UBERON_0011025.md +++ b/md/UBERON/25/UBERON_0011025.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011025 * *Label* = aryepiglotticus muscle - * *Definition* = The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_muscle] + * *Definition* = The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_muscle ] ## Synonyms - * ary-epiglottic part of oblique arytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46602] + * ary-epiglottic part of oblique arytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46602 ] * aryepiglottic - * aryepiglottic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46602] - * aryepiglotticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_muscle] - * aryepiglottus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * aryepiglottus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * pars aryepiglottica (musculus arytenoideus obliquus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46602] - * pars aryepiglottica musculus arytenoidei obliqui [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus aryepiglotticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars aryepiglottica musculi arytenoidei obliqui [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aryepiglottic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46602 ] + * aryepiglotticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_muscle ] + * aryepiglottus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * aryepiglottus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * pars aryepiglottica (musculus arytenoideus obliquus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46602 ] + * pars aryepiglottica musculus arytenoidei obliqui [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus aryepiglotticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars aryepiglottica musculi arytenoidei obliqui [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46602 * SCTID:244818009 - * UMLS:C0224177 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aryepiglottic_Muscle] + * UMLS:C0224177 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aryepiglottic_Muscle ] * Wikipedia:Aryepiglottic_muscle * http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png * ncithesaurus:Aryepiglottic_Muscle @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0011325.md b/md/UBERON/25/UBERON_0011325.md index 821022f0fc..aafdaf4542 100644 --- a/md/UBERON/25/UBERON_0011325.md +++ b/md/UBERON/25/UBERON_0011325.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011325 * *Label* = pharyngeal nerve plexus - * *Definition* = The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_plexus_of_vagus_nerve] + * *Definition* = The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_plexus_of_vagus_nerve ] ## Synonyms - * pharyngeal nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82453] - * pharyngeal plexus of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_plexus_of_vagus_nerve] - * plexus pharyngeus nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_plexus_of_vagus_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pharyngeal nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82453 ] + * pharyngeal plexus of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_plexus_of_vagus_nerve ] + * plexus pharyngeus nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_plexus_of_vagus_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * vagus nerve pharyngeal plexus ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0011625.md b/md/UBERON/25/UBERON_0011625.md index 06aad59841..7adbf6b16a 100644 --- a/md/UBERON/25/UBERON_0011625.md +++ b/md/UBERON/25/UBERON_0011625.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011625 * *Label* = inferior horn of thyroid cartilage - * *Definition* = The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_horn_of_thyroid_cartilage] + * *Definition* = The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_horn_of_thyroid_cartilage ] ## Synonyms - * cornu inferius (cartilago thyroidea) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55297] - * cornu inferius cartilaginis thyroideae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cornu inferius (cartilago thyroidea) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55297 ] + * cornu inferius cartilaginis thyroideae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011625 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0011825.md b/md/UBERON/25/UBERON_0011825.md index 5627a43a20..b31a6f5583 100644 --- a/md/UBERON/25/UBERON_0011825.md +++ b/md/UBERON/25/UBERON_0011825.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011825 * *Label* = loose connective tissue - * *Definition* = Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19783[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Loose_connective_tissue] + * *Definition* = Irregular connective tissue, the intercellular matrix of which contains a sparse irregular network of collagen and elastic fiber bundles. Examples: areolar tissue, neuroglial tissue, mucoid tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19783, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Loose_connective_tissue ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * FMA:19783 - * UMLS:C1253917 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Loose_Connective_Tissue] + * UMLS:C1253917 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Loose_Connective_Tissue ] * Wikipedia:Loose_connective_tissue * ncithesaurus:Loose_Connective_Tissue @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011825 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0011925.md b/md/UBERON/25/UBERON_0011925.md index 6af25b7850..9f8741600e 100644 --- a/md/UBERON/25/UBERON_0011925.md +++ b/md/UBERON/25/UBERON_0011925.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011925 * *Label* = preganglionic autonomic fiber - * *Definition* = Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.663.542.122[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preganglionic_nerve_fibers] + * *Definition* = Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.663.542.122, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preganglionic_nerve_fibers ] ## Synonyms - * preganglionic nerve fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5923] + * preganglionic nerve fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5923 ] * preganglionic autonomic fibre ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0012125.md b/md/UBERON/25/UBERON_0012125.md index 36e4deb269..1ade4da127 100644 --- a/md/UBERON/25/UBERON_0012125.md +++ b/md/UBERON/25/UBERON_0012125.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012125 * *Label* = dermatological-muscosal system - * *Definition* = Anatomical system that consists of the integumental system plus all mucosae and submucosae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/53] + * *Definition* = Anatomical system that consists of the integumental system plus all mucosae and submucosae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/53 ] ## Synonyms - * dermatological system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBI:MC] + * dermatological system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBI:MC ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0012325.md b/md/UBERON/25/UBERON_0012325.md index ee0d097d67..acb8e626d7 100644 --- a/md/UBERON/25/UBERON_0012325.md +++ b/md/UBERON/25/UBERON_0012325.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012325 * *Label* = retrocerebral complex - * *Definition* = Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001803] + * *Definition* = Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001803 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012325 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0012425.md b/md/UBERON/25/UBERON_0012425.md index 500cbfb111..f01ccfb515 100644 --- a/md/UBERON/25/UBERON_0012425.md +++ b/md/UBERON/25/UBERON_0012425.md @@ -7,7 +7,7 @@ ## Synonyms - * striated border [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70978] + * striated border [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70978 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012425 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0012925.md b/md/UBERON/25/UBERON_0012925.md index a6b9aa0341..7e551b97c0 100644 --- a/md/UBERON/25/UBERON_0012925.md +++ b/md/UBERON/25/UBERON_0012925.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012925 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0013125.md b/md/UBERON/25/UBERON_0013125.md index d7bbf4bdbb..4f02df389c 100644 --- a/md/UBERON/25/UBERON_0013125.md +++ b/md/UBERON/25/UBERON_0013125.md @@ -6,7 +6,7 @@ ## Synonyms - * subcardinal vein left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001932] + * subcardinal vein left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001932 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [subcardinal vein](../../UBERON/96/UBERON_0006296.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013125 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0013525.md b/md/UBERON/25/UBERON_0013525.md index 201f5d760e..522f1cedd0 100644 --- a/md/UBERON/25/UBERON_0013525.md +++ b/md/UBERON/25/UBERON_0013525.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013525 * *Label* = stomach lumen - * *Definition* = The anatomical space that is enclosed by a stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The anatomical space that is enclosed by a stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * cavity of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14585] - * gastric cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14585] + * cavity of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14585 ] + * gastric cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14585 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ cavity which is bound by the internal surface of the wall of stomach. Examples: There is only one cavity of stomach[FMA:14585]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0013725.md b/md/UBERON/25/UBERON_0013725.md index 2fa708d57e..25c0c73ee8 100644 --- a/md/UBERON/25/UBERON_0013725.md +++ b/md/UBERON/25/UBERON_0013725.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013725 * *Label* = anterior talofibular ligament - * *Definition* = The anterior talofibular ligament is a ligament in the ankle. It passes from the anterior margin of the fibular malleolus, anteriorly and medially, to the talus bone, in front of its lateral articular facet. It is one of the lateral ligaments of the ankle and prevents the foot from sliding forward in relation to the shin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_talofibular_ligament] + * *Definition* = The anterior talofibular ligament is a ligament in the ankle. It passes from the anterior margin of the fibular malleolus, anteriorly and medially, to the talus bone, in front of its lateral articular facet. It is one of the lateral ligaments of the ankle and prevents the foot from sliding forward in relation to the shin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_talofibular_ligament ] ## Synonyms - * ligamentum talofibulare anterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_talofibular_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum talofibulare anterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_talofibular_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0014525.md b/md/UBERON/25/UBERON_0014525.md index 007e3b021b..1a79fcdbf9 100644 --- a/md/UBERON/25/UBERON_0014525.md +++ b/md/UBERON/25/UBERON_0014525.md @@ -6,7 +6,7 @@ ## Synonyms - * internal capsule subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61951] + * internal capsule subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61951 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014525 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0014725.md b/md/UBERON/25/UBERON_0014725.md index 41cafa7eca..10b58396d9 100644 --- a/md/UBERON/25/UBERON_0014725.md +++ b/md/UBERON/25/UBERON_0014725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014725 * *Label* = intercalated duct - * *Definition* = A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = A small duct which drains individual secretory units. These are usually inconspicuous, lined by a simple epithelium consisting of low cuboidal cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014725 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_0015025.md b/md/UBERON/25/UBERON_0015025.md index 6575c5da06..7cb648920c 100644 --- a/md/UBERON/25/UBERON_0015025.md +++ b/md/UBERON/25/UBERON_0015025.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015025 * *Label* = manual digit 1 phalanx endochondral element - * *Definition* = A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 1 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 1 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 1 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 1 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit 1 phalanx cartilage element](../../UBERON/75/UBERON_0010675.md)or[manual digit 1 phalanx pre-cartilage condensation](../../UBERON/75/UBERON_0010575.md)or[manual digit 1 phalanx](../../UBERON/20/UBERON_0003620.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000125.md b/md/UBERON/25/UBERON_2000125.md index cbcd93f18c..bbe31ac943 100644 --- a/md/UBERON/25/UBERON_2000125.md +++ b/md/UBERON/25/UBERON_2000125.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000125 * *Label* = mandibular lateral line neuromast - * *Definition* = Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast mandibular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000125] - * neuromasts mandibular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * neuromast mandibular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000125 ] + * neuromasts mandibular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000225.md b/md/UBERON/25/UBERON_2000225.md index 7e472635e9..2b7d722c80 100644 --- a/md/UBERON/25/UBERON_2000225.md +++ b/md/UBERON/25/UBERON_2000225.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral crista primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000225[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * lateral crista primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000225, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000425.md b/md/UBERON/25/UBERON_2000425.md index 2f839bea2b..5ac206df18 100644 --- a/md/UBERON/25/UBERON_2000425.md +++ b/md/UBERON/25/UBERON_2000425.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000425 * *Label* = anterior lateral line nerve - * *Definition* = Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * rostral lateral line nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000425] + * rostral lateral line nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000425 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000525.md b/md/UBERON/25/UBERON_2000525.md index 01f4a36f87..31a431f861 100644 --- a/md/UBERON/25/UBERON_2000525.md +++ b/md/UBERON/25/UBERON_2000525.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000525 * *Label* = intercalarium - * *Definition* = Neural arch and Weberian ossicle that has been modified in shape relative to other neural arches. Intercalarium includes three parts: an anterolateral process (the manubrium) which is embedded in the interossicular ligament and the ascending and articulating processes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neural arch and Weberian ossicle that has been modified in shape relative to other neural arches. Intercalarium includes three parts: an anterolateral process (the manubrium) which is embedded in the interossicular ligament and the ascending and articulating processes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian ossicle 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000525] - * third Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000525] + * Weberian ossicle 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000525 ] + * third Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000525 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000725.md b/md/UBERON/25/UBERON_2000725.md index ab52294dd7..4b7692e24b 100644 --- a/md/UBERON/25/UBERON_2000725.md +++ b/md/UBERON/25/UBERON_2000725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000725 * *Label* = somite 11 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 11 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2000925.md b/md/UBERON/25/UBERON_2000925.md index bc1b848295..c56167d6f3 100644 --- a/md/UBERON/25/UBERON_2000925.md +++ b/md/UBERON/25/UBERON_2000925.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000925 * *Label* = hypaxial region somite 10 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001025.md b/md/UBERON/25/UBERON_2001025.md index 8b87bd5aa2..bf65ca926b 100644 --- a/md/UBERON/25/UBERON_2001025.md +++ b/md/UBERON/25/UBERON_2001025.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001025 * *Label* = occipital lateral line neuromast - * *Definition* = A neuromast that is part of the occipital lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A neuromast that is part of the occipital lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast occipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001025] - * neuromasts occipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001025[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neuromast occipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001025 ] + * neuromasts occipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001025, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromast](../../UBERON/04/UBERON_0008904.md) and [part_of](../../BFO/50/BFO_0000050.md) some [occipital lateral line](../../UBERON/93/UBERON_0003093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001025 + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001125.md b/md/UBERON/25/UBERON_2001125.md index 53f0551ab5..e29f30f135 100644 --- a/md/UBERON/25/UBERON_2001125.md +++ b/md/UBERON/25/UBERON_2001125.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001125 * *Label* = organizer inducing center - * *Definition* = The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Nieuwkoop center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001125] + * Nieuwkoop center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001125 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001225.md b/md/UBERON/25/UBERON_2001225.md index 08cf7128f6..2ab72173d7 100644 --- a/md/UBERON/25/UBERON_2001225.md +++ b/md/UBERON/25/UBERON_2001225.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001225 * *Label* = basibranchial 3 bone - * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). Typically develops in the anterior copula cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). Typically develops in the anterior copula cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 3 element](../../UBERON/17/UBERON_2001917.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001425.md b/md/UBERON/25/UBERON_2001425.md index d2927c9460..39c5fe699b 100644 --- a/md/UBERON/25/UBERON_2001425.md +++ b/md/UBERON/25/UBERON_2001425.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001525.md b/md/UBERON/25/UBERON_2001525.md index ce5f971c8e..6b229fb738 100644 --- a/md/UBERON/25/UBERON_2001525.md +++ b/md/UBERON/25/UBERON_2001525.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001525 * *Label* = hypobranchial 2 cartilage - * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001725.md b/md/UBERON/25/UBERON_2001725.md index 473c6bc24f..4c9d06e3ff 100644 --- a/md/UBERON/25/UBERON_2001725.md +++ b/md/UBERON/25/UBERON_2001725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001725 * *Label* = caudal principal ray 13 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 12. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 12. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001825.md b/md/UBERON/25/UBERON_2001825.md index 236f3ee636..bc78b25fbd 100644 --- a/md/UBERON/25/UBERON_2001825.md +++ b/md/UBERON/25/UBERON_2001825.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001825 * *Label* = urohyal lateral process - * *Definition* = Process that is part of the urohyal; it is the posterolaterally directed process located on the ventrolateral margin of urohyal. Urohyal lateral process is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is part of the urohyal; it is the posterolaterally directed process located on the ventrolateral margin of urohyal. Urohyal lateral process is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonyms: urohyal lateral lamella (Toledo-Piza 2007; Zanata and Vari 2005) urohyal ventral wing (Castro and Vari 2004). ## Synonyms - * branche ventrale de l'urohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * processus hyo-pelvien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000139] - * urohyal lateral lamella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001825] - * urohyal ventral wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001825] + * branche ventrale de l'urohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * processus hyo-pelvien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000139 ] + * urohyal lateral lamella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001825 ] + * urohyal ventral wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001825 ] ## Cross-references @@ -38,7 +38,9 @@ urohyal ventral wing (Castro and Vari 2004). * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2001925.md b/md/UBERON/25/UBERON_2001925.md index 19e612f40c..7b8a47fd10 100644 --- a/md/UBERON/25/UBERON_2001925.md +++ b/md/UBERON/25/UBERON_2001925.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001925 * *Label* = spiracular canal - * *Definition* = Foramen for passage of nerve supplying otic lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen for passage of nerve supplying otic lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2002125.md b/md/UBERON/25/UBERON_2002125.md index a6c7965696..575f7c74c7 100644 --- a/md/UBERON/25/UBERON_2002125.md +++ b/md/UBERON/25/UBERON_2002125.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002125 * *Label* = caudal-fin organ - * *Definition* = Organ that consists of a pouch located on the ventral caudal-fin lobe, opening posteriorly, and composed of glandular tissue. The caudal-fin organ presumably functions to secrete pheromones during courtship. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Organ that consists of a pouch located on the ventral caudal-fin lobe, opening posteriorly, and composed of glandular tissue. The caudal-fin organ presumably functions to secrete pheromones during courtship. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: Weitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of the Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a @@ -13,10 +13,10 @@ Porto Alegre: EDIPUCRS. p 171-192. ## Synonyms - * caudal fin organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002125] - * caudal organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002125] - * caudal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002125] - * glandular organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002125] + * caudal fin organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002125 ] + * caudal organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002125 ] + * caudal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002125 ] + * glandular organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002125 ] ## Cross-references @@ -39,7 +39,9 @@ Porto Alegre: EDIPUCRS. p 171-192. * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2002225.md b/md/UBERON/25/UBERON_2002225.md index 946a976250..7c7e599362 100644 --- a/md/UBERON/25/UBERON_2002225.md +++ b/md/UBERON/25/UBERON_2002225.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior pronephric ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002225[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * posterior pronephric ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002225, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2005025.md b/md/UBERON/25/UBERON_2005025.md index e59609244e..9b14f32c25 100644 --- a/md/UBERON/25/UBERON_2005025.md +++ b/md/UBERON/25/UBERON_2005025.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005025 * *Label* = dorsal longitudinal anastomotic vessel - * *Definition* = Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * DLAV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005025] + * DLAV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005025 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2005225.md b/md/UBERON/25/UBERON_2005225.md index f146d40159..7f1524a6bd 100644 --- a/md/UBERON/25/UBERON_2005225.md +++ b/md/UBERON/25/UBERON_2005225.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005225 * *Label* = median fin radial bone - * *Definition* = median fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = median fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * actinophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000173] - * actinoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000163] - * axonoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000141] - * ptrygiophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * actinophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000173 ] + * actinoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000163 ] + * axonoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000141 ] + * ptrygiophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -27,14 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [median fin radial element](../../UBERON/25/UBERON_2105225.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2005325.md b/md/UBERON/25/UBERON_2005325.md index 344d84a62a..37691dec7d 100644 --- a/md/UBERON/25/UBERON_2005325.md +++ b/md/UBERON/25/UBERON_2005325.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005325 * *Label* = obsolete integument ionocyte - * *Definition* = Ionocyte located in the integument during embryonic and larval stages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ionocyte located in the integument during embryonic and larval stages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * skin ionocyte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005325] - * extrabranchial ionocyte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005325] + * skin ionocyte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005325 ] + * extrabranchial ionocyte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005325 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/25/UBERON_2007025.md b/md/UBERON/25/UBERON_2007025.md index 25566789d4..7b45d8b08d 100644 --- a/md/UBERON/25/UBERON_2007025.md +++ b/md/UBERON/25/UBERON_2007025.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2105225.md b/md/UBERON/25/UBERON_2105225.md index 65bdee8958..48aac1815e 100644 --- a/md/UBERON/25/UBERON_2105225.md +++ b/md/UBERON/25/UBERON_2105225.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2105225 * *Label* = median fin radial element - * *Definition* = Radial element that is part of a median fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Radial element that is part of a median fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * actinophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000173] - * actinoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000163] - * axonoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000141] - * ptrygiophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * actinophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000173 ] + * actinoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000163 ] + * axonoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000141 ] + * ptrygiophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [median fin](../../UBERON/62/UBERON_4000162.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_2205225.md b/md/UBERON/25/UBERON_2205225.md index dc9d71bdfd..a6862151a5 100644 --- a/md/UBERON/25/UBERON_2205225.md +++ b/md/UBERON/25/UBERON_2205225.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205225 * *Label* = median fin radial cartilage - * *Definition* = median fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = median fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [median fin radial element](../../UBERON/25/UBERON_2105225.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_3000825.md b/md/UBERON/25/UBERON_3000825.md index cb71ab81ca..bbfb6a4dad 100644 --- a/md/UBERON/25/UBERON_3000825.md +++ b/md/UBERON/25/UBERON_3000825.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000825 * *Label* = crista longitudinalis scapula - * *Definition* = Longitudinal ridge on the medial (inner) face of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Longitudinal ridge on the medial (inner) face of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_3010125.md b/md/UBERON/25/UBERON_3010125.md index ab7b6b46da..8b555614af 100644 --- a/md/UBERON/25/UBERON_3010125.md +++ b/md/UBERON/25/UBERON_3010125.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010125 * *Label* = musculus levator bulbi - * *Definition* = Cranial nerve V innervated; ventral to the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cranial nerve V innervated; ventral to the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_3010325.md b/md/UBERON/25/UBERON_3010325.md index e5e183499d..0e4898d1ba 100644 --- a/md/UBERON/25/UBERON_3010325.md +++ b/md/UBERON/25/UBERON_3010325.md @@ -6,7 +6,7 @@ ## Synonyms - * animal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010325] + * animal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010325 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0012284 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/25/UBERON_3010525.md b/md/UBERON/25/UBERON_3010525.md index fa1a266de3..9e2920d637 100644 --- a/md/UBERON/25/UBERON_3010525.md +++ b/md/UBERON/25/UBERON_3010525.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_3010625.md b/md/UBERON/25/UBERON_3010625.md index 0b3b4340e9..25e618002f 100644 --- a/md/UBERON/25/UBERON_3010625.md +++ b/md/UBERON/25/UBERON_3010625.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010625 * *Label* = embryonic hypochord - * *Definition* = A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_3010725.md b/md/UBERON/25/UBERON_3010725.md index 0dd56ce3a9..7dc9fa1dbd 100644 --- a/md/UBERON/25/UBERON_3010725.md +++ b/md/UBERON/25/UBERON_3010725.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010725 * *Label* = M. coracoradialis - * *Definition* = Muscle which originates from the omosternum and epicoracoid cartilage and inserts on the proximal radioulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the omosternum and epicoracoid cartilage and inserts on the proximal radioulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_4200025.md b/md/UBERON/25/UBERON_4200025.md index 7ecd6ef839..ba6a495511 100644 --- a/md/UBERON/25/UBERON_4200025.md +++ b/md/UBERON/25/UBERON_4200025.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_4200125.md b/md/UBERON/25/UBERON_4200125.md index ad4e671007..ed26eb9eb1 100644 --- a/md/UBERON/25/UBERON_4200125.md +++ b/md/UBERON/25/UBERON_4200125.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/25/UBERON_4300025.md b/md/UBERON/25/UBERON_4300025.md index b8febc5486..6fe4d491ec 100644 --- a/md/UBERON/25/UBERON_4300025.md +++ b/md/UBERON/25/UBERON_4300025.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300025 * *Label* = posterior dorsolateral plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms - * PDL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * PDL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0000026.md b/md/UBERON/26/UBERON_0000026.md index c4deead203..32d776b74b 100644 --- a/md/UBERON/26/UBERON_0000026.md +++ b/md/UBERON/26/UBERON_0000026.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000026 * *Label* = appendage - * *Definition* = Major subdivision of an organism that protrudes from the body[DOS, CARO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:DOS] + * *Definition* = Major subdivision of an organism that protrudes from the body[DOS, CARO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:DOS ] * *Comment* = Note this is currently a subtype of organism subdivision - which would exclude feathers ## Synonyms - * extremitaet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001492] + * extremitaet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001492 ] * extremity - * limbs/digits/tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000001] + * limbs/digits/tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000001 ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A01.378 * MIAA:0000023 * OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA - * UMLS:C0598782 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Appendage] + * UMLS:C0598782 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Appendage ] * VSAO:0000075 * Wikipedia:Appendage * XAO:0000218 @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA][BILA:0000018]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified][GO:0048736]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = appendicular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0000126.md b/md/UBERON/26/UBERON_0000126.md index 9f6f7d1e28..a7087462f9 100644 --- a/md/UBERON/26/UBERON_0000126.md +++ b/md/UBERON/26/UBERON_0000126.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000126 * *Label* = cranial nerve nucleus - * *Definition* = collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_nerve_nucleus] + * *Definition* = collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_nerve_nucleus ] ## Synonyms - * cranial neural nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54501] + * cranial neural nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54501 ] * nucleus of cranial nerve - * nucleus nervi cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_nerve_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus nervi cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_nerve_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,19 +25,20 @@ ## Superclasses * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cranial nerve](../../UBERON/85/UBERON_0001785.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cranial nerve](../../UBERON/85/UBERON_0001785.md) and [nucleus of brain](../../UBERON/08/UBERON_0002308.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0000326.md b/md/UBERON/26/UBERON_0000326.md index 0269bde5bb..156b0b9bc2 100644 --- a/md/UBERON/26/UBERON_0000326.md +++ b/md/UBERON/26/UBERON_0000326.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000326 * *Label* = pancreatic juice - * *Definition* = Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030157] + * *Definition* = Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030157 ] ## Synonyms - * succus pancreaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000504] + * succus pancreaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000504 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0000426.md b/md/UBERON/26/UBERON_0000426.md index 703f8fdcef..73760d6319 100644 --- a/md/UBERON/26/UBERON_0000426.md +++ b/md/UBERON/26/UBERON_0000426.md @@ -6,8 +6,8 @@ ## Synonyms - * intermediate trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86561] - * interstitial trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002366] + * intermediate trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86561 ] + * interstitial trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002366 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0000926.md b/md/UBERON/26/UBERON_0000926.md index 1adf98f0a9..4edac6f378 100644 --- a/md/UBERON/26/UBERON_0000926.md +++ b/md/UBERON/26/UBERON_0000926.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000926 * *Label* = mesoderm - * *Definition* = The middle germ layer of the embryo, between the endoderm and ectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesoderm] + * *Definition* = The middle germ layer of the embryo, between the endoderm and ectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesoderm ] * *Comment* = Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html]. Mesoderm may not be homologous across verteberates[UBERONREF:0000002] ## Synonyms - * embryonic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000152] - * entire mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SCTID:362854004[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * embryonic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000152 ] + * entire mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SCTID:362854004, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * mesodermal mantle ## Cross-references @@ -34,7 +34,7 @@ * MIAA:0000174 * SCTID:362854004 * TAO:0000041 - * UMLS:C0025485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesoderm] + * UMLS:C0025485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesoderm ] * VHOG:0000152 * Wikipedia:Mesoderm * XAO:0000050 @@ -68,8 +68,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesodermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003263 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001026.md b/md/UBERON/26/UBERON_0001026.md index 5c7a457f36..a094d37af1 100644 --- a/md/UBERON/26/UBERON_0001026.md +++ b/md/UBERON/26/UBERON_0001026.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001026 * *Label* = obsolete motor nerve - * *Definition* = General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Motor_nerve] + * *Definition* = General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Motor_nerve ] ## Synonyms @@ -28,9 +28,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001026 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/26/UBERON_0001126.md b/md/UBERON/26/UBERON_0001126.md index 3e5775b209..c90fd69cb0 100644 --- a/md/UBERON/26/UBERON_0001126.md +++ b/md/UBERON/26/UBERON_0001126.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001126 * *Label* = serratus dorsalis superior muscle - * *Definition* = The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebr and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serratus_posterior_superior_muscle] + * *Definition* = The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebr and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serratus_posterior_superior_muscle ] ## Synonyms - * serratus dorsalis cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002377] + * serratus dorsalis cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002377 ] * serratus dorsalis cranialis muscle - * serratus posterior superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13401] + * serratus posterior superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13401 ] * superior serratus dorsalis ## Cross-references @@ -17,7 +17,7 @@ * FMA:13401 * MA:0002377 * SCTID:244935007 - * UMLS:C1710058 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Serratus_Dorsalis_Cranialis] + * UMLS:C1710058 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Serratus_Dorsalis_Cranialis ] * Wikipedia:Serratus_posterior_superior_muscle * ncithesaurus:Serratus_Dorsalis_Cranialis @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001226.md b/md/UBERON/26/UBERON_0001226.md index 74e60f1221..e696652df3 100644 --- a/md/UBERON/26/UBERON_0001226.md +++ b/md/UBERON/26/UBERON_0001226.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001226 * *Label* = major calyx - * *Definition* = The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_calyx] + * *Definition* = The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_calyx ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * major calix - * calices renales majores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_calyx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * calices renales majores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_calyx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001326.md b/md/UBERON/26/UBERON_0001326.md index bea1e3c5b8..f565c09798 100644 --- a/md/UBERON/26/UBERON_0001326.md +++ b/md/UBERON/26/UBERON_0001326.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001326 * *Label* = levator ani muscle - * *Definition* = The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_ani] + * *Definition* = The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_ani ] * *Comment* = Taxon notes: the levator ani muscle acts to lower the tail, in animals that have one ## Synonyms - * levator ani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002332] - * musculus levator ani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_ani[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * levator ani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002332 ] + * musculus levator ani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_ani, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:19087 * MA:0002332 * SCTID:181753008 - * UMLS:C0224384 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Levator_Ani] + * UMLS:C0224384 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Levator_Ani ] * Wikipedia:Levator_ani * http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001426.md b/md/UBERON/26/UBERON_0001426.md index ff970bb27d..080d5cc412 100644 --- a/md/UBERON/26/UBERON_0001426.md +++ b/md/UBERON/26/UBERON_0001426.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001526.md b/md/UBERON/26/UBERON_0001526.md index f07e1e2c81..ff9fc04318 100644 --- a/md/UBERON/26/UBERON_0001526.md +++ b/md/UBERON/26/UBERON_0001526.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001526 * *Label* = extensor carpi ulnaris muscle - * *Definition* = Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_carpi_ulnaris_muscle] + * *Definition* = Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_carpi_ulnaris_muscle ] * *Comment* = Taxon notes: Amphibians - def: "Muscle of the forearm: It shares a common origin with two other muscles of the forearm. It arises from the lateral epicondyle of the humerus by two tendons: the first one is in common with the m. extensor digitorum communis longus, and the second one is broad and in common with the m. epicondylocubitalis. It is pinnately attached to the dorsal surface of the distal carpal 5-4-3." [AAO:0010281]. Note that we make the insertion relationship a GCI until digit numbering issues are resolved ## Synonyms @@ -18,7 +18,7 @@ * FMA:38506 * MA:0002292 * SCTID:244992008 - * UMLS:C0224272 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Carpi_Ulnaris] + * UMLS:C0224272 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Carpi_Ulnaris ] * Wikipedia:Extensor_carpi_ulnaris_muscle * http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscle of the forearm: It shares a common origin with two other muscles of the forearm. It arises from the lateral epicondyle of the humerus by two tendons: the first one is in common with the m. extensor digitorum communis longus, and the second one is broad and in common with the m. epicondylocubitalis. It is pinnately attached to the dorsal surface of the distal carpal 5-4-3.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001626.md b/md/UBERON/26/UBERON_0001626.md index 4965e925d3..035c97282a 100644 --- a/md/UBERON/26/UBERON_0001626.md +++ b/md/UBERON/26/UBERON_0001626.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001626 * *Label* = left coronary artery - * *Definition* = Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_coronary_artery] + * *Definition* = Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_coronary_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * left coronary arterial tree - * arteria coronaria sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_coronary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria coronaria sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_coronary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:50040 * MA:0002454 * SCTID:362034004 - * UMLS:C1261082 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Coronary_Artery] + * UMLS:C1261082 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Coronary_Artery ] * Wikipedia:Left_coronary_artery * http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Gray495.png/200px-Gray495.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001726.md b/md/UBERON/26/UBERON_0001726.md index dd89f8d6ac..d162843c4a 100644 --- a/md/UBERON/26/UBERON_0001726.md +++ b/md/UBERON/26/UBERON_0001726.md @@ -16,9 +16,9 @@ * MA:0001593 * NIF_GrossAnatomy:birnlex_4102 * SCTID:368728006 - * UMLS:C0226964 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4102] - * UMLS:C0226964 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Papilla_of_the_Tongue] - * UMLS:C1289183 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4102] + * UMLS:C0226964 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4102 ] + * UMLS:C0226964 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Papilla_of_the_Tongue ] + * UMLS:C1289183 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4102 ] * ncithesaurus:Papilla_of_the_Tongue ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001826.md b/md/UBERON/26/UBERON_0001826.md index be7c7e7e68..7f04190827 100644 --- a/md/UBERON/26/UBERON_0001826.md +++ b/md/UBERON/26/UBERON_0001826.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001826 * *Label* = nasal cavity mucosa - * *Definition* = the mucous membrane that lines the nasal cavity[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002238] + * *Definition* = the mucous membrane that lines the nasal cavity[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002238 ] * *Comment* = TODO - check lining vs part of. split olfactory and nasal mucosa? ## Synonyms - * mucosa of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59684] - * mucous membrane of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59684] + * mucosa of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59684 ] + * mucous membrane of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59684 ] * tunica mucosa nasalis - * tunica mucosa nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59684[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica mucosa nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59684, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nasal mucosa ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0001926.md b/md/UBERON/26/UBERON_0001926.md index ff00609c64..4a8b63c705 100644 --- a/md/UBERON/26/UBERON_0001926.md +++ b/md/UBERON/26/UBERON_0001926.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001926 * *Label* = lateral geniculate body - * *Definition* = The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_geniculate_body] + * *Definition* = The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_geniculate_body ] * *Comment* = Note that BTO has distinct classes for body and nucleus, but other sources treat as identical ## Synonyms - * corpus geniculatum laterales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1662] + * corpus geniculatum laterales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1662 ] * lateral geniculate complex * lateral geniculate nucleus - * nucleus geniculatus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1662] - * LGN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1662[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * LGB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004367[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpus geniculatum externum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004367] - * corpus geniculatum laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004367] - * corpus geniculatus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:352[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * external geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_geniculate_nucleus] - * nucleus corporis geniculati lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:352[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus corporis geniculati lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LG] + * nucleus geniculatus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1662 ] + * LGN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1662, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * LGB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004367, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpus geniculatum externum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004367 ] + * corpus geniculatum laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004367 ] + * corpus geniculatus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:352, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * external geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_geniculate_nucleus ] + * nucleus corporis geniculati lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:352, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus corporis geniculati lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LG ] ## Cross-references @@ -32,10 +32,10 @@ * FMA:62209 * MA:0000869 * NIF_GrossAnatomy:birnlex_1662 - * NeuroNames:352 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1662] + * NeuroNames:352 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1662 ] * SCTID:362377006 - * UMLS:C0086526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1662] - * UMLS:C0086526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Geniculate_Body] + * UMLS:C0086526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1662 ] + * UMLS:C0086526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Geniculate_Body ] * Wikipedia:Lateral_geniculate_body * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png * ncithesaurus:External_Geniculate_Body @@ -58,8 +58,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002026.md b/md/UBERON/26/UBERON_0002026.md index e3973e63f5..86b50ad69e 100644 --- a/md/UBERON/26/UBERON_0002026.md +++ b/md/UBERON/26/UBERON_0002026.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002026 * *Label* = stratum spinosum of epidermis - * *Definition* = a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_spinosum] + * *Definition* = a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_spinosum ] ## Synonyms * epidermis stratum spinosum - * prickle cell layer of epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67542] + * prickle cell layer of epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67542 ] * squamous cell layer of epidermis * stratum malphighii * stratum spinosum * epidermis prickle cell layer - * prickle cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000435] + * prickle cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000435 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:67542 * MA:0000807 * SCTID:420086000 - * UMLS:C0221924 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Spinosum] + * UMLS:C0221924 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Spinosum ] * Wikipedia:Stratum_spinosum * ncithesaurus:Stratum_Spinosum @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002126.md b/md/UBERON/26/UBERON_0002126.md index 5dbb7f10ac..3de2e239e4 100644 --- a/md/UBERON/26/UBERON_0002126.md +++ b/md/UBERON/26/UBERON_0002126.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002126 * *Label* = solitary tract nuclear complex - * *Definition* = The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_of_tractus_solitarius] + * *Definition* = The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_of_tractus_solitarius ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * nuclei of solitary tract - * nucleus tractus solitarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72242[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus tractus solitarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72242, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * solitary nuclei ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002226.md b/md/UBERON/26/UBERON_0002226.md index 3b7770eb33..e4bda6b5f1 100644 --- a/md/UBERON/26/UBERON_0002226.md +++ b/md/UBERON/26/UBERON_0002226.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002226 * *Label* = basilar membrane of cochlea - * *Definition* = a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_membrane] + * *Definition* = a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_membrane ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * basilar membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001190] - * lamina basilaris ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basilar membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001190 ] + * lamina basilaris ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,8 +19,8 @@ * MESH:A09.246.631.246.125 * NIF_GrossAnatomy:birnlex_2521 * SCTID:362574003 - * UMLS:C0004816 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2521] - * UMLS:C0004816 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basilar_Membrane] + * UMLS:C0004816 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2521 ] + * UMLS:C0004816 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basilar_Membrane ] * Wikipedia:Basilar_membrane * http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/0/0c/Cochlea-crosssection.png/250px-Cochlea-crosssection.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002326.md b/md/UBERON/26/UBERON_0002326.md index 2f023a8892..d1723c1d70 100644 --- a/md/UBERON/26/UBERON_0002326.md +++ b/md/UBERON/26/UBERON_0002326.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002326 * *Label* = lamina propria of urethra - * *Definition* = A lamina propria that is part of a urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * lamina propria mucosa of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria mucosa of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urethra lamina propria - * urethra lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urethra lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urethral lamina propria ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002426.md b/md/UBERON/26/UBERON_0002426.md index b1d7ace81e..5dcbd6afb2 100644 --- a/md/UBERON/26/UBERON_0002426.md +++ b/md/UBERON/26/UBERON_0002426.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002426 * *Label* = chest muscle - * *Definition* = A muscle organ that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior thoracic region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9619] - * muscle organ of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9619 ] + * muscle organ of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * musculus thoracicus * thoracic muscle @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002526.md b/md/UBERON/26/UBERON_0002526.md index 3452bfc0f4..6ce92c0455 100644 --- a/md/UBERON/26/UBERON_0002526.md +++ b/md/UBERON/26/UBERON_0002526.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002626.md b/md/UBERON/26/UBERON_0002626.md index aa2bb393ac..efd7509853 100644 --- a/md/UBERON/26/UBERON_0002626.md +++ b/md/UBERON/26/UBERON_0002626.md @@ -6,10 +6,10 @@ ## Synonyms - * caput (caudatus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61852] - * caudate nuclear head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61852] - * caput nuclei caudati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:227[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * head of the caudate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:227] + * caput (caudatus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61852 ] + * caudate nuclear head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61852 ] + * caput nuclei caudati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:227, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * head of the caudate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:227 ] ## Cross-references @@ -17,9 +17,9 @@ * EMAPA:18547 * FMA:61852 * NIF_GrossAnatomy:birnlex_1212 - * NeuroNames:227 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1212] + * NeuroNames:227 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1212 ] * SCTID:279298007 - * UMLS:C0152336 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1212] + * UMLS:C0152336 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1212 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002726.md b/md/UBERON/26/UBERON_0002726.md index a8db179434..4f3d50d546 100644 --- a/md/UBERON/26/UBERON_0002726.md +++ b/md/UBERON/26/UBERON_0002726.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002726 * *Label* = cervical spinal cord - * *Definition* = A spinal cord segment that adjacent_to a cervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord segment that adjacent_to a cervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cervical segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71166] - * cervical segments of spinal cord [1-8] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71166] - * cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71166] - * segmenta cervicalia medullae spinalis [1-8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71166[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cervical segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71166 ] + * cervical segments of spinal cord [1-8] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71166 ] + * cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71166 ] + * segmenta cervicalia medullae spinalis [1-8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71166, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,9 +18,9 @@ * NIF_GrossAnatomy:birnlex_1499 * NeuroNames:1654 * SCTID:180960003 - * UMLS:C0581619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1499] - * UMLS:C0581619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Spinal_Cord] - * UMLS:C1278837 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1499] + * UMLS:C0581619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1499 ] + * UMLS:C0581619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Spinal_Cord ] + * UMLS:C1278837 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1499 ] * ncithesaurus:Cervical_Spinal_Cord ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [cervical region](../../UBERON/34/UBERON_0005434.md) and [spinal cord segment](../../UBERON/44/UBERON_0005844.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002826.md b/md/UBERON/26/UBERON_0002826.md index 40d590677e..b019b13a20 100644 --- a/md/UBERON/26/UBERON_0002826.md +++ b/md/UBERON/26/UBERON_0002826.md @@ -6,14 +6,14 @@ ## Synonyms - * vestibular ganglion inferior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002779] + * vestibular ganglion inferior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002779 ] ## Cross-references * FMA:77532 * MA:0002779 * NIF_GrossAnatomy:birnlex_2552 - * UMLS:C1186167 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2552] + * UMLS:C1186167 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2552 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0002926.md b/md/UBERON/26/UBERON_0002926.md index 034758d5ab..debb2d5437 100644 --- a/md/UBERON/26/UBERON_0002926.md +++ b/md/UBERON/26/UBERON_0002926.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gustatory system](../../UBERON/33/UBERON_0001033.md) and [sensory epithelium](../../UBERON/34/UBERON_0006934.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003026.md b/md/UBERON/26/UBERON_0003026.md index 437afe139b..4064a1322a 100644 --- a/md/UBERON/26/UBERON_0003026.md +++ b/md/UBERON/26/UBERON_0003026.md @@ -6,11 +6,11 @@ ## Synonyms - * limitans thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_931] - * nucleus limitans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_931] - * nucleus limitans opticus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_931] - * nucleus limitans thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_931] - * Lim [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_931[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * limitans thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_931 ] + * nucleus limitans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_931 ] + * nucleus limitans opticus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_931 ] + * nucleus limitans thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_931 ] + * Lim [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_931, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -18,9 +18,9 @@ * BM:Die-Th-L * FMA:62220 * NIF_GrossAnatomy:birnlex_931 - * NeuroNames:361 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_931] + * NeuroNames:361 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_931 ] * SCTID:369181002 - * UMLS:C0175299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_931] + * UMLS:C0175299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_931 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003126.md b/md/UBERON/26/UBERON_0003126.md index a7f6192230..2ef7f96858 100644 --- a/md/UBERON/26/UBERON_0003126.md +++ b/md/UBERON/26/UBERON_0003126.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003126 * *Label* = trachea - * *Definition* = The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060438[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebrate_trachea] + * *Definition* = The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060438, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebrate_trachea ] * *Comment* = Taxon notes: in mouse 15-18 C-rings, 15-20 in human. [ISBN10:0123813611]. In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx. ## Synonyms * cartilaginous trachea - * vertebrate trachea [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * vertebrate trachea [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * windpipe - * tracheal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001388] + * tracheal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001388 ] ## Cross-references @@ -31,7 +31,7 @@ * MIAA:0000137 * OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA * SCTID:181213009 - * UMLS:C0040578 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea] + * UMLS:C0040578 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea ] * VHOG:0000371 * Wikipedia:Vertebrate_trachea * XAO:0000118 @@ -66,8 +66,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In primitive fishes and most tetrapods, the lungs of adults are usually paired. They lie ventral to the digestive tract and are connected to the outside environment through the trachea.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = tracheal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003326.md b/md/UBERON/26/UBERON_0003326.md index 7befc9cc7b..18225d295a 100644 --- a/md/UBERON/26/UBERON_0003326.md +++ b/md/UBERON/26/UBERON_0003326.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003326 * *Label* = mesenchyme of mammary gland - * *Definition* = Mesenchyme that is part of a mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lactiferous gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lactiferous gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mammary mesenchyme - * mesenchyme of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003426.md b/md/UBERON/26/UBERON_0003426.md index e28f4054ac..6f249f15cc 100644 --- a/md/UBERON/26/UBERON_0003426.md +++ b/md/UBERON/26/UBERON_0003426.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003426 * *Label* = dermis adipose tissue - * *Definition* = An adipose tissue that is part of a dermis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adipose tissue that is part of a dermis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adipose tissue of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dermis fat tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dermis fatty tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat tissue of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fatty tissue of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adipose tissue of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dermis fat tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dermis fatty tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat tissue of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fatty tissue of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dermis](../../UBERON/67/UBERON_0002067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003526.md b/md/UBERON/26/UBERON_0003526.md index 1dc44b2d8e..1249724d09 100644 --- a/md/UBERON/26/UBERON_0003526.md +++ b/md/UBERON/26/UBERON_0003526.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003526 * *Label* = respiratory system capillary - * *Definition* = A capillary that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capillary that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood capillary of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood capillary of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood capillary of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood capillary of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capillary](../../UBERON/82/UBERON_0001982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003726.md b/md/UBERON/26/UBERON_0003726.md index cf3eab7300..0cac1cb447 100644 --- a/md/UBERON/26/UBERON_0003726.md +++ b/md/UBERON/26/UBERON_0003726.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003726 * *Label* = thoracic nerve - * *Definition* = The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.800.720.800] + * *Definition* = The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.800.720.800 ] ## Synonyms - * thoracic spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5860] - * nervi thoracici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_nerves[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pectoral nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:857] + * thoracic spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5860 ] + * nervi thoracici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_nerves, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pectoral nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:857 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003826.md b/md/UBERON/26/UBERON_0003826.md index e8a558ab5f..22e33c7d4b 100644 --- a/md/UBERON/26/UBERON_0003826.md +++ b/md/UBERON/26/UBERON_0003826.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003826 * *Label* = upper leg bone - * *Definition* = A bone that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] + * *Definition* = A bone that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ] * *Comment* = May be merged into femur. See https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ## Synonyms - * femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] + * femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0003926.md b/md/UBERON/26/UBERON_0003926.md index 2996150697..03992f1620 100644 --- a/md/UBERON/26/UBERON_0003926.md +++ b/md/UBERON/26/UBERON_0003926.md @@ -6,7 +6,7 @@ ## Synonyms - * retina photoreceptor layer outer segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002472] + * retina photoreceptor layer outer segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002472 ] ## Cross-references @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004026.md b/md/UBERON/26/UBERON_0004026.md index 4f586f8fd4..6650f43db7 100644 --- a/md/UBERON/26/UBERON_0004026.md +++ b/md/UBERON/26/UBERON_0004026.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004026 * *Label* = caudal ganglionic eminence - * *Definition* = the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004278] + * *Definition* = the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004278 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004126.md b/md/UBERON/26/UBERON_0004126.md index 4f32bd5bbd..3981eb8525 100644 --- a/md/UBERON/26/UBERON_0004126.md +++ b/md/UBERON/26/UBERON_0004126.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004126 * *Label* = trabecular layer of ventricle - * *Definition* = A myocardium trabecular layer that is part of a cardiac ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A myocardium trabecular layer that is part of a cardiac ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check FMA ## Synonyms - * myocardium of region of ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83511] - * trabecular cardiac ventricle muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003222] - * ventricular trabecular myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003222] + * myocardium of region of ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83511 ] + * trabecular cardiac ventricle muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003222 ] + * ventricular trabecular myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003222 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium trabecular layer](../../UBERON/24/UBERON_0004124.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004226.md b/md/UBERON/26/UBERON_0004226.md index 74996b0fcd..d51b5e6bcd 100644 --- a/md/UBERON/26/UBERON_0004226.md +++ b/md/UBERON/26/UBERON_0004226.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004226 * *Label* = gastrointestinal system smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a digestive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a digestive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive system involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive system non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive system smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive system smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive system involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive system non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive system smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive system smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004326.md b/md/UBERON/26/UBERON_0004326.md index bc87ba8886..66d801b9a7 100644 --- a/md/UBERON/26/UBERON_0004326.md +++ b/md/UBERON/26/UBERON_0004326.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004326 * *Label* = middle phalanx of pedal digit 4 - * *Definition* = A middle phalanx that is part of a pedal digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a pedal digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th toe intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th toe middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth middle phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32625] - * intermediate phalanx of 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32625] - * middle phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of the 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 4th toe intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th toe middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth middle phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32625 ] + * intermediate phalanx of 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32625 ] + * middle phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of the 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004426.md b/md/UBERON/26/UBERON_0004426.md index c31e0a2acd..61f5746cba 100644 --- a/md/UBERON/26/UBERON_0004426.md +++ b/md/UBERON/26/UBERON_0004426.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004426 * *Label* = proximal epiphysis of fifth metacarpal bone - * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metacarpal bone of digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of fifth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42800] - * fifth metacarpal bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42800] - * proximal end of fifth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42800] + * base of fifth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42800 ] + * fifth metacarpal bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42800 ] + * proximal end of fifth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42800 ] * proximal epiphysis of metacarpal 5 ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 5](../../UBERON/49/UBERON_0003649.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004526.md b/md/UBERON/26/UBERON_0004526.md index 4f7a6c302b..fbc6e34707 100644 --- a/md/UBERON/26/UBERON_0004526.md +++ b/md/UBERON/26/UBERON_0004526.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004526 * *Label* = cardiac muscle tissue of trabecula carnea of left ventricle - * *Definition* = A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) and [trabecula carnea cardiac muscle tissue](../../UBERON/52/UBERON_0003452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004626.md b/md/UBERON/26/UBERON_0004626.md index a473fe1017..505f6c5e8e 100644 --- a/md/UBERON/26/UBERON_0004626.md +++ b/md/UBERON/26/UBERON_0004626.md @@ -7,9 +7,9 @@ ## Synonyms - * First dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9165] - * T1 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9165] - * first thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9165] + * First dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9165 ] + * T1 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9165 ] + * first thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9165 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9165 * MA:0001438 * SCTID:181828003 - * UMLS:C0459933 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T1_Vertebra] + * UMLS:C0459933 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T1_Vertebra ] * ncithesaurus:T1_Vertebra ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004726.md b/md/UBERON/26/UBERON_0004726.md index 2d60fe6858..82c055813c 100644 --- a/md/UBERON/26/UBERON_0004726.md +++ b/md/UBERON/26/UBERON_0004726.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004726 * *Label* = vasa recta - * *Definition* = In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta] + * *Definition* = In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta ] * *Comment* = TODO - is this a vein or set of veins? in MA it is a venous blood vessel ## Synonyms - * arteriolae rectae renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * kidney vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011324] - * renal medullary capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30043] - * set of straight arterioles of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72006] - * straight arterioles of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72006] - * vasa recta of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72006] - * vasa recta renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta] - * arteriae rectae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta] - * arteriolae rectae renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteriolae recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta] - * vasa rectae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vasa_recta] + * arteriolae rectae renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * kidney vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011324 ] + * renal medullary capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30043 ] + * set of straight arterioles of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72006 ] + * straight arterioles of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72006 ] + * vasa recta of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72006 ] + * vasa recta renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta ] + * arteriae rectae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta ] + * arteriolae rectae renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteriolae recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta ] + * vasa rectae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vasa_recta ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0004926.md b/md/UBERON/26/UBERON_0004926.md index a94b751455..b75fe27bd8 100644 --- a/md/UBERON/26/UBERON_0004926.md +++ b/md/UBERON/26/UBERON_0004926.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004926 * *Label* = submucosa of cystic duct - * *Definition* = A submucosa that is part of a cystic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a cystic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cystic duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cystic ductal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18013] + * cystic duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cystic ductal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18013 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cystic duct](../../UBERON/52/UBERON_0001152.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005026.md b/md/UBERON/26/UBERON_0005026.md index 92c1c10b02..c77500dbb4 100644 --- a/md/UBERON/26/UBERON_0005026.md +++ b/md/UBERON/26/UBERON_0005026.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005026 * *Label* = mucosa of middle ear - * *Definition* = A mucosa that is part of a middle ear [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a middle ear [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * middle ear mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle ear organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of tympanic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59663] - * mucous membrane of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of middle ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa cavitatis tympanicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59663[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle ear mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle ear organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of tympanic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59663 ] + * mucous membrane of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of middle ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa cavitatis tympanicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59663, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle ear](../../UBERON/56/UBERON_0001756.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005126.md b/md/UBERON/26/UBERON_0005126.md index abcc9cd62d..f149940097 100644 --- a/md/UBERON/26/UBERON_0005126.md +++ b/md/UBERON/26/UBERON_0005126.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005126 * *Label* = metanephric S1 - * *Definition* = The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072231] + * *Definition* = The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072231 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [proximal convoluted tubule segment 1](../../UBERON/96/UBERON_0004196.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005226.md b/md/UBERON/26/UBERON_0005226.md index 054419c168..f893ec9e89 100644 --- a/md/UBERON/26/UBERON_0005226.md +++ b/md/UBERON/26/UBERON_0005226.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005226 * *Label* = pedal digit epithelium - * *Definition* = An epithelium that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe epithelium - * foot digit epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005326.md b/md/UBERON/26/UBERON_0005326.md index 4c8e694582..618a4fcaaf 100644 --- a/md/UBERON/26/UBERON_0005326.md +++ b/md/UBERON/26/UBERON_0005326.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005326 * *Label* = mesonephric glomerulus vasculature - * *Definition* = The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061231] + * *Definition* = The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061231 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [renal glomerulus vasculature](../../UBERON/90/UBERON_0004190.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005426.md b/md/UBERON/26/UBERON_0005426.md index e6d002d03f..f0e5999b9a 100644 --- a/md/UBERON/26/UBERON_0005426.md +++ b/md/UBERON/26/UBERON_0005426.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005426 * *Label* = lens vesicle - * *Definition* = Portion of tissue that gives rise to the lens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=994726&aid=3514998&group_id=76834] + * *Definition* = Portion of tissue that gives rise to the lens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=994726&aid=3514998&group_id=76834 ] * *Comment* = Development notes: the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals[ZFA] ## Synonyms - * hollow lens vesicle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * solid lens vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001679[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hollow lens vesicle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * solid lens vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001679, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vesicle formed from the lens pit of the embryo, developing into the crystalline lens. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005626.md b/md/UBERON/26/UBERON_0005626.md index ddd89006d9..051f897f56 100644 --- a/md/UBERON/26/UBERON_0005626.md +++ b/md/UBERON/26/UBERON_0005626.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005626 * *Label* = ventral mesogastrium - * *Definition* = Ventral mesentery is the part of the peritoneum closest to the navel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_mesentery] + * *Definition* = Ventral mesentery is the part of the peritoneum closest to the navel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_mesentery ] * *Comment* = "The primitive gut is enveloped by a mesentery that has a dorsal and a ventral aspect. The ventral mesentery degenerates during development with the exception of the foregut ventral mesentery, which develops into specialized structures (see foregut embryology)" [http://sprojects.mmi.mcgill.ca/embryology/gi/pgm.htm]. todo - check ## Synonyms - * ventral mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_mesentery] + * ventral mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_mesentery ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:18907 * MA:0001621 * TAO:0005133 - * UMLS:C1519967 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventral_Mesogastrium] + * UMLS:C1519967 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventral_Mesogastrium ] * VHOG:0000351 * Wikipedia:Ventral_mesentery * ZFA:0005133 @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mesentery that originates from the ventral side of the peritoneal cavity.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral sheet of the primitive mesentery that encloses the stomach. The lesser omentum develops from the ventral mesogastrium. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005726.md b/md/UBERON/26/UBERON_0005726.md index b0970a1fb2..fa8c3dba51 100644 --- a/md/UBERON/26/UBERON_0005726.md +++ b/md/UBERON/26/UBERON_0005726.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of chemical stimulus](../../GO/06/GO_0007606.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0005826.md b/md/UBERON/26/UBERON_0005826.md index 5168ab65a6..be993fafbe 100644 --- a/md/UBERON/26/UBERON_0005826.md +++ b/md/UBERON/26/UBERON_0005826.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005826 * *Label* = gracile fasciculus of spinal cord - * *Definition* = A gracile fasciculus that is part of a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gracile fasciculus that is part of a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = editor note: check ontology structure, isa parentage to fasciculus of spinal cord should be inferred ## Synonyms - * gracile fascicle of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73938] - * spinal cord segment of fasciculus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73938] - * spinal cord segment of gracile fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73938] + * gracile fascicle of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73938 ] + * spinal cord segment of fasciculus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73938 ] + * spinal cord segment of gracile fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73938 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gracile fasciculus](../../UBERON/21/UBERON_0005821.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0006026.md b/md/UBERON/26/UBERON_0006026.md index e421e65d7a..f33c682fbf 100644 --- a/md/UBERON/26/UBERON_0006026.md +++ b/md/UBERON/26/UBERON_0006026.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006026 * *Label* = interdigital region between manual digits 1 and 2 - * *Definition* = An interdigital region that adjacent_to a manual digit 1 and adjacent_to a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a manual digit 1 and adjacent_to a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) and [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0006226.md b/md/UBERON/26/UBERON_0006226.md index 32f87fb528..5cc6b03ca1 100644 --- a/md/UBERON/26/UBERON_0006226.md +++ b/md/UBERON/26/UBERON_0006226.md @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An outgrowth of the otic vesicle that forms the endolymphatic duct and sac during embryonic development. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0006326.md b/md/UBERON/26/UBERON_0006326.md index c0cf9fc924..99b62a3a64 100644 --- a/md/UBERON/26/UBERON_0006326.md +++ b/md/UBERON/26/UBERON_0006326.md @@ -6,9 +6,9 @@ ## Synonyms - * arytenoid cartilage base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55349] - * base of arytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55349] - * base of arytenoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55349] + * arytenoid cartilage base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55349 ] + * base of arytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55349 ] + * base of arytenoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55349 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0006526.md b/md/UBERON/26/UBERON_0006526.md index 44dc888081..061c257cbb 100644 --- a/md/UBERON/26/UBERON_0006526.md +++ b/md/UBERON/26/UBERON_0006526.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0006726.md b/md/UBERON/26/UBERON_0006726.md index 6c8b80d424..49752dd9da 100644 --- a/md/UBERON/26/UBERON_0006726.md +++ b/md/UBERON/26/UBERON_0006726.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006726 * *Label* = outer canthus - * *Definition* = A corner of the outer (lateral) part of an eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A corner of the outer (lateral) part of an eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = see also FMA:59321 ## Synonyms - * lateral canthus of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59321] - * lateral palpebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59315] - * lateral angle of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59321] - * lateral canthus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001264] - * outer canthi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral canthus of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59321 ] + * lateral palpebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59315 ] + * lateral angle of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59321 ] + * lateral canthus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001264 ] + * outer canthi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * temporal canthus ## Cross-references @@ -22,7 +22,7 @@ * FMA:59315 * MA:0001264 * SCTID:362525004 - * UMLS:C1711189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Outer_Canthus] + * UMLS:C1711189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Outer_Canthus ] * VHOG:0001571 * ncithesaurus:Outer_Canthus @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The angle at the end of the palpebral fissure, the slit between the eyelids, close to the temporal region of the skull. [ISBN10:0124020607, p.263][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0007026.md b/md/UBERON/26/UBERON_0007026.md index 542a782e38..efe51a895d 100644 --- a/md/UBERON/26/UBERON_0007026.md +++ b/md/UBERON/26/UBERON_0007026.md @@ -18,7 +18,7 @@ * BILA:0000084 * SCTID:360394002 - * UMLS:C1514442 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordial_Gut] + * UMLS:C1514442 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordial_Gut ] * ncithesaurus:Primordial_Gut ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0007126.md b/md/UBERON/26/UBERON_0007126.md index 582505f8ef..fb8527738d 100644 --- a/md/UBERON/26/UBERON_0007126.md +++ b/md/UBERON/26/UBERON_0007126.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007126 * *Label* = pharyngeal pouch 5 - * *Definition* = A pharyngeal pouch between pharyngeal arches 5 and 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607] + * *Definition* = A pharyngeal pouch between pharyngeal arches 5 and 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607 ] * *Comment* = pouches 5 and 6 are hard to distinguish. Rudimentary structure, becomes part of the fourth pouch contributing to thyroid C-cells[WP] ## Synonyms * 5th branchial pouch - * fifth visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000255] - * pharyngeal pouches 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001133[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * visceral pouch 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000255] - * 5th pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001206] - * 5th visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001206] - * fifth pharyngeal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001206] - * fifth visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001206] + * fifth visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000255 ] + * pharyngeal pouches 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001133, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * visceral pouch 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000255 ] + * 5th pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001206 ] + * 5th visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001206 ] + * fifth pharyngeal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001206 ] + * fifth visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001206 ] ## Cross-references * AAO:0011118 * EFO:0003636 * TAO:0001133 - * UMLS:C1517185 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fifth_Pharyngeal_Pouch] + * UMLS:C1517185 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fifth_Pharyngeal_Pouch ] * VHOG:0001206 * Wikipedia:Pharyngeal_pouch_(embryology)#Fifth_pouch * XAO:0000255 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fifth of the pharyngeal (endodermal) evaginations between the visceral arches.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0007626.md b/md/UBERON/26/UBERON_0007626.md index c1a4e787c1..c64f9528fd 100644 --- a/md/UBERON/26/UBERON_0007626.md +++ b/md/UBERON/26/UBERON_0007626.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0007726.md b/md/UBERON/26/UBERON_0007726.md index fdf70dea34..3f556ad312 100644 --- a/md/UBERON/26/UBERON_0007726.md +++ b/md/UBERON/26/UBERON_0007726.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007726 * *Label* = interphalangeal joint of pedal digit 3 - * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35359] - * interphalangeal joint of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35359[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35359 ] + * interphalangeal joint of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35359, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of pes](../../UBERON/21/UBERON_0007721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0007826.md b/md/UBERON/26/UBERON_0007826.md index 13548dbbce..73608708b8 100644 --- a/md/UBERON/26/UBERON_0007826.md +++ b/md/UBERON/26/UBERON_0007826.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007826 * *Label* = peritoneal mesentery - * *Definition* = A double layer composed of peritoneum that attaches the visceral organs to the body wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A double layer composed of peritoneum that attaches the visceral organs to the body wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [peritoneum](../../UBERON/58/UBERON_0002358.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0008426.md b/md/UBERON/26/UBERON_0008426.md index e2ea403d60..6d991322c9 100644 --- a/md/UBERON/26/UBERON_0008426.md +++ b/md/UBERON/26/UBERON_0008426.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008426 * *Label* = transverse foramen of atlas - * *Definition* = A transverse foramen that is part of a vertebral bone 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A transverse foramen that is part of a vertebral bone 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foramen transversarium of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23998] + * foramen transversarium of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23998 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 1](../../UBERON/92/UBERON_0001092.md) and [transverse foramen](../../UBERON/30/UBERON_0000130.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0008826.md b/md/UBERON/26/UBERON_0008826.md index a311b90187..e1ed22e476 100644 --- a/md/UBERON/26/UBERON_0008826.md +++ b/md/UBERON/26/UBERON_0008826.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008826 * *Label* = pulmonary surfactant - * *Definition* = Secretion produced by Type 2 pulmonary alveolar cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62780] + * *Definition* = Secretion produced by Type 2 pulmonary alveolar cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62780 ] ## Synonyms - * alveolar surfactant [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62780] - * lung surfactant [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002534] + * alveolar surfactant [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62780 ] + * lung surfactant [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002534 ] ## Cross-references * FMA:62780 * MA:0002534 - * UMLS:C0034085 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lung_Surfactant] + * UMLS:C0034085 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lung_Surfactant ] * ncithesaurus:Lung_Surfactant ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0008926.md b/md/UBERON/26/UBERON_0008926.md index d8baf82df3..8c001c50a0 100644 --- a/md/UBERON/26/UBERON_0008926.md +++ b/md/UBERON/26/UBERON_0008926.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008926 * *Label* = sublaminar layer S5 - * *Definition* = A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [ganglionic layer of retina](../../UBERON/92/UBERON_0001792.md) and [adjacent to](../../RO/20/RO_0002220.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) and [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0009026.md b/md/UBERON/26/UBERON_0009026.md index 6cff834760..ecab2f8cbc 100644 --- a/md/UBERON/26/UBERON_0009026.md +++ b/md/UBERON/26/UBERON_0009026.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009026 * *Label* = iliac circumflex artery - * *Definition* = One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Circumflex_Iliac_Artery] + * *Definition* = One of two (deep circumflex and superficial circumflex) iliac arteries that supply the lower abdomen, inguinal lymph nodes, sartorius, and tensor fasciae latae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Circumflex_Iliac_Artery ] ## Synonyms @@ -12,7 +12,7 @@ * MA:0001975 * SCTID:244327004 - * UMLS:C0447101 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Circumflex_Iliac_Artery] + * UMLS:C0447101 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Circumflex_Iliac_Artery ] * ncithesaurus:Circumflex_Iliac_Artery ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0009126.md b/md/UBERON/26/UBERON_0009126.md index f63e3a12b1..d7d4d9aca3 100644 --- a/md/UBERON/26/UBERON_0009126.md +++ b/md/UBERON/26/UBERON_0009126.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009126 * *Label* = nodosal placode - * *Definition* = Caudalmost epibranchial placode. Associated with 3rd branchial cleft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NBK:NBK53175] + * *Definition* = Caudalmost epibranchial placode. Associated with 3rd branchial cleft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NBK:NBK53175 ] * *Comment* = Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes ## Synonyms - * epibranchial placode 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004208] - * nodose placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004213] - * vagal epibranchial placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004213] - * vagal X placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * vagal placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * epibranchial placode 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004208 ] + * nodose placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004213 ] + * vagal epibranchial placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004213 ] + * vagal X placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * vagal placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0009526.md b/md/UBERON/26/UBERON_0009526.md index 508043ccc9..3cf3705936 100644 --- a/md/UBERON/26/UBERON_0009526.md +++ b/md/UBERON/26/UBERON_0009526.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009526 * *Label* = maxillary process mesenchyme - * *Definition* = Mesenchyme that is part of a maxillary prominence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a maxillary prominence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of maxillary process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17361] - * mesenchyme of maxillary prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * mesenchyme of maxillary process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17361 ] + * mesenchyme of maxillary prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [maxillary prominence](../../UBERON/68/UBERON_0005868.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010026.md b/md/UBERON/26/UBERON_0010026.md index 2e5c2e710e..c0be03151e 100644 --- a/md/UBERON/26/UBERON_0010026.md +++ b/md/UBERON/26/UBERON_0010026.md @@ -7,10 +7,10 @@ ## Synonyms - * ventral 3rd arch pharyngeal pouch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002173] + * ventral 3rd arch pharyngeal pouch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002173 ] * ventral 3rd branchial pouch * ventral pharyngeal pouch 3 - * ventral wing of pharyngeal pouch 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * ventral wing of pharyngeal pouch 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * ventral branchial pouch 3 endoderm * ventral pharyngeal pouch 3 endoderm @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010126.md b/md/UBERON/26/UBERON_0010126.md index ee60844a03..de01dcd8b3 100644 --- a/md/UBERON/26/UBERON_0010126.md +++ b/md/UBERON/26/UBERON_0010126.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010126 * *Label* = future nucleus ambiguus - * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a nucleus ambiguus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a nucleus ambiguus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010226.md b/md/UBERON/26/UBERON_0010226.md index a9594d25ce..afa9a66406 100644 --- a/md/UBERON/26/UBERON_0010226.md +++ b/md/UBERON/26/UBERON_0010226.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010226 * *Label* = future cardiac ventricle - * *Definition* = Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001719] + * *Definition* = Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001719 ] ## Synonyms - * presumptive cardiac ventricle heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001719] - * primordial cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71006] - * primordial ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71006] + * presumptive cardiac ventricle heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001719 ] + * primordial cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71006 ] + * primordial ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71006 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010326.md b/md/UBERON/26/UBERON_0010326.md index 89532a56f9..96fb885179 100644 --- a/md/UBERON/26/UBERON_0010326.md +++ b/md/UBERON/26/UBERON_0010326.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010326 * *Label* = optic pedicel - * *Definition* = permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:071676959X[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] + * *Definition* = permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:071676959X, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010426.md b/md/UBERON/26/UBERON_0010426.md index d3755175ab..24ff50da4f 100644 --- a/md/UBERON/26/UBERON_0010426.md +++ b/md/UBERON/26/UBERON_0010426.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010426 * *Label* = oropharyngeal choana - * *Definition* = opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: Aves. Function notes: has function in pressure equalization in birds that fly to high altitudes ## Synonyms @@ -11,7 +11,7 @@ * choana of oropharynx * oropharyngeal naris * palatal choana - * apertura nasalis interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000025] + * apertura nasalis interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000025 ] * cleft palate * palatal cleft @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hole on the nasal capsule that connects the nasal and buccal cavites.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass nasal opening (AAO:0000316)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010526.md b/md/UBERON/26/UBERON_0010526.md index ef94b62f0b..801969f74e 100644 --- a/md/UBERON/26/UBERON_0010526.md +++ b/md/UBERON/26/UBERON_0010526.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010526 * *Label* = fibularis brevis - * *Definition* = The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_brevis] + * *Definition* = The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_brevis ] ## Synonyms - * musculus peroneus brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * peronaeus brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_brevis] - * peroneus brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22540] - * peroneus brevis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_brevis] - * fibularis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_brevis] - * peronius brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_brevis] + * musculus peroneus brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * peronaeus brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_brevis ] + * peroneus brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22540 ] + * peroneus brevis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_brevis ] + * fibularis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_brevis ] + * peronius brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_brevis ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010726.md b/md/UBERON/26/UBERON_0010726.md index 9d29af0ec2..5a25742c0a 100644 --- a/md/UBERON/26/UBERON_0010726.md +++ b/md/UBERON/26/UBERON_0010726.md @@ -6,7 +6,7 @@ ## Synonyms - * manual vesalian bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * manual vesalian bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0010926.md b/md/UBERON/26/UBERON_0010926.md index c9dc8f6626..2481cbe49f 100644 --- a/md/UBERON/26/UBERON_0010926.md +++ b/md/UBERON/26/UBERON_0010926.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010926 * *Label* = lateral thyrohyoid ligament - * *Definition* = The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_thyrohyoid_ligament] + * *Definition* = The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_thyrohyoid_ligament ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:55139 * SCTID:279555009 - * UMLS:C0458565 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Thyrohyoid_Ligament] + * UMLS:C0458565 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Thyrohyoid_Ligament ] * Wikipedia:Lateral_thyrohyoid_ligament * ncithesaurus:Lateral_Thyrohyoid_Ligament @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0011326.md b/md/UBERON/26/UBERON_0011326.md index 3bdbd06fbb..cf487ea586 100644 --- a/md/UBERON/26/UBERON_0011326.md +++ b/md/UBERON/26/UBERON_0011326.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011326 * *Label* = superior laryngeal nerve - * *Definition* = The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_laryngeal_nerve] + * *Definition* = The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_laryngeal_nerve ] ## Synonyms - * nervus laryngealis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6239] - * nervus laryngeus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_laryngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior laryngeal branch of inferior vagal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6239] - * superior laryngeal branch of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6239] + * nervus laryngealis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6239 ] + * nervus laryngeus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_laryngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior laryngeal branch of inferior vagal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6239 ] + * superior laryngeal branch of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6239 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0011626.md b/md/UBERON/26/UBERON_0011626.md index ddf8ecdecd..ba1c10c863 100644 --- a/md/UBERON/26/UBERON_0011626.md +++ b/md/UBERON/26/UBERON_0011626.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011626 * *Label* = tympanohyoid cartilage - * *Definition* = the terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/tympanohyoid] + * *Definition* = the terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/tympanohyoid ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0011826.md b/md/UBERON/26/UBERON_0011826.md index 43ba941fb4..6f5772d17f 100644 --- a/md/UBERON/26/UBERON_0011826.md +++ b/md/UBERON/26/UBERON_0011826.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011826 * *Label* = vestibular gland - * *Definition* = Lobular organ the parenchyma of which consists of glandular acini which communicate with the vestibule of vagina. Examples: right vestibular gland, lesser vestibular gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_glands] + * *Definition* = Lobular organ the parenchyma of which consists of glandular acini which communicate with the vestibule of vagina. Examples: right vestibular gland, lesser vestibular gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_glands ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011826 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0011926.md b/md/UBERON/26/UBERON_0011926.md index ae96610c48..d44f8f49a6 100644 --- a/md/UBERON/26/UBERON_0011926.md +++ b/md/UBERON/26/UBERON_0011926.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011926 * *Label* = postganglionic sympathetic fiber - * *Definition* = A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008312] + * *Definition* = A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008312 ] ## Synonyms - * postganglionic sympathetic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.663.542.075.800] - * sympathetic postganglionic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008312] + * postganglionic sympathetic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.663.542.075.800 ] + * sympathetic postganglionic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008312 ] ## Cross-references * MESH:A08.663.542.075.800 * SCTID:323617002 - * UMLS:C0206254 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Postganglionic_Sympathetic_Fiber] + * UMLS:C0206254 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Postganglionic_Sympathetic_Fiber ] * ncithesaurus:Postganglionic_Sympathetic_Fiber ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sympathetic nervous system](../../UBERON/13/UBERON_0000013.md) and [postganglionic autonomic fiber](../../UBERON/24/UBERON_0011924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011926 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0012126.md b/md/UBERON/26/UBERON_0012126.md index 2699bd9fe3..37943b02e3 100644 --- a/md/UBERON/26/UBERON_0012126.md +++ b/md/UBERON/26/UBERON_0012126.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012126 * *Label* = fibulare - * *Definition* = One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element[AAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000913] + * *Definition* = One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element[AAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000913 ] * *Comment* = In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale[AAO] ## Synonyms - * astragalus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000913] + * astragalus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000913 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0012326.md b/md/UBERON/26/UBERON_0012326.md index 2221ce4178..a5ea9a62bc 100644 --- a/md/UBERON/26/UBERON_0012326.md +++ b/md/UBERON/26/UBERON_0012326.md @@ -7,7 +7,7 @@ ## Synonyms - * pars infravaginalis gubernaculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11997885] + * pars infravaginalis gubernaculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11997885 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012326 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0012426.md b/md/UBERON/26/UBERON_0012426.md index 33c0b1d744..e3e4418094 100644 --- a/md/UBERON/26/UBERON_0012426.md +++ b/md/UBERON/26/UBERON_0012426.md @@ -7,7 +7,7 @@ ## Synonyms - * short microvillus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70979] + * short microvillus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70979 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013126.md b/md/UBERON/26/UBERON_0013126.md index 01478e3530..62304e9915 100644 --- a/md/UBERON/26/UBERON_0013126.md +++ b/md/UBERON/26/UBERON_0013126.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013126 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013226.md b/md/UBERON/26/UBERON_0013226.md index 23b5097f2a..b624b47165 100644 --- a/md/UBERON/26/UBERON_0013226.md +++ b/md/UBERON/26/UBERON_0013226.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013226 * *Label* = accessory lacrimal gland - * *Definition* = Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Accessory_Lacrimal_Gland] + * *Definition* = Serous gland with distended lumen. It includes the gland of Krause in the lacrimal sac and the gland of Wolfring on the inner surface of the upper eyelid. (NCI) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Accessory_Lacrimal_Gland ] * *Comment* = Editor notes: may be re-classified as a sibling on lacrimal gland ## Synonyms - * glandulae lacrimales accessoriae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandulae lacrimales accessoriae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * SCTID:278360002 - * UMLS:C0266586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Accessory_Lacrimal_Gland] + * UMLS:C0266586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Accessory_Lacrimal_Gland ] * ncithesaurus:Accessory_Lacrimal_Gland ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013226 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013426.md b/md/UBERON/26/UBERON_0013426.md index ba634505c6..e90f3bb9ac 100644 --- a/md/UBERON/26/UBERON_0013426.md +++ b/md/UBERON/26/UBERON_0013426.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013426 * *Label* = obelion - * *Definition* = The term obelion is applied to that point of the sagittal suture which is on a level with the parietal foramina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obelion] + * *Definition* = The term obelion is applied to that point of the sagittal suture which is on a level with the parietal foramina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obelion ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013426 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013526.md b/md/UBERON/26/UBERON_0013526.md index ebbb95611d..d7ee488453 100644 --- a/md/UBERON/26/UBERON_0013526.md +++ b/md/UBERON/26/UBERON_0013526.md @@ -6,7 +6,7 @@ ## Synonyms - * lumen of otocyst [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25363] + * lumen of otocyst [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25363 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ear vesicle](../../UBERON/51/UBERON_0003051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013626.md b/md/UBERON/26/UBERON_0013626.md index 7169ddc6ed..5d75568476 100644 --- a/md/UBERON/26/UBERON_0013626.md +++ b/md/UBERON/26/UBERON_0013626.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0013726.md b/md/UBERON/26/UBERON_0013726.md index aaeab2460e..391b5c8366 100644 --- a/md/UBERON/26/UBERON_0013726.md +++ b/md/UBERON/26/UBERON_0013726.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013726 * *Label* = posterior talofibular ligament - * *Definition* = The posterior talofibular ligament, runs almost horizontally from the depression at the medial and back part of the fibular malleolus (lateral malleolus) to a prominent tubercle on the posterior surface of the talus immediately lateral to the groove for the tendon of the flexor hallucis longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_talofibular_ligament] + * *Definition* = The posterior talofibular ligament, runs almost horizontally from the depression at the medial and back part of the fibular malleolus (lateral malleolus) to a prominent tubercle on the posterior surface of the talus immediately lateral to the groove for the tendon of the flexor hallucis longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_talofibular_ligament ] ## Synonyms - * ligamentum talofibulare posterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_talofibular_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum talofibulare posterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_talofibular_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0014526.md b/md/UBERON/26/UBERON_0014526.md index 1fc303d794..008db02ca6 100644 --- a/md/UBERON/26/UBERON_0014526.md +++ b/md/UBERON/26/UBERON_0014526.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014526 * *Label* = anterior limb of internal capsule - * *Definition* = Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144257] + * *Definition* = Portion of internal capsule lying between the lenticular nucleus and the head of the caudate nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144257 ] ## Synonyms - * anterior limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_limb_of_internal_capsule] + * anterior limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_limb_of_internal_capsule ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior limb of internal capsule (or frontal part) contains: (1) fibers running from the thalamus to the frontal lobe; (2) fibers connecting the lentiform and caudate nuclei; (3) fibers connecting the cortex with the corpus striatum; and (4) fibers passing from the frontal lobe through the medial fifth of the base of the cerebral peduncle to the nuclei pontis[Wikipedia:Anterior_limb_of_internal_capsule]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014526 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0014626.md b/md/UBERON/26/UBERON_0014626.md index 376e750f81..c945e32f4f 100644 --- a/md/UBERON/26/UBERON_0014626.md +++ b/md/UBERON/26/UBERON_0014626.md @@ -6,13 +6,13 @@ ## Synonyms - * base of the cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2556[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * base of the cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2556, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_2556 * SCTID:279778001 - * UMLS:C0458766 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2556] + * UMLS:C0458766 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2556 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014626 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0014726.md b/md/UBERON/26/UBERON_0014726.md index c8e223b803..bbbcf6ccca 100644 --- a/md/UBERON/26/UBERON_0014726.md +++ b/md/UBERON/26/UBERON_0014726.md @@ -6,8 +6,8 @@ ## Synonyms - * ductus intercalatus (pancreas) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16013] - * pancreatic ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16013] + * ductus intercalatus (pancreas) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16013 ] + * pancreatic ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16013 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intercalated duct](../../UBERON/25/UBERON_0014725.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pancreas](../../UBERON/64/UBERON_0001264.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014726 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_0015026.md b/md/UBERON/26/UBERON_0015026.md index 5de2785f00..3240452e0a 100644 --- a/md/UBERON/26/UBERON_0015026.md +++ b/md/UBERON/26/UBERON_0015026.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015026 * *Label* = manual digit 2 phalanx endochondral element - * *Definition* = A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 2 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 2 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 2 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 2 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit 2 phalanx cartilage element](../../UBERON/76/UBERON_0010676.md)or[manual digit 2 phalanx pre-cartilage condensation](../../UBERON/76/UBERON_0010576.md)or[manual digit 2 phalanx](../../UBERON/36/UBERON_0003636.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000226.md b/md/UBERON/26/UBERON_2000226.md index cc710ee115..e8a919bbd2 100644 --- a/md/UBERON/26/UBERON_2000226.md +++ b/md/UBERON/26/UBERON_2000226.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000226 * *Label* = lateral ethmoid - * *Definition* = Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lateral ethmoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000226[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * parethmo?de [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000141] - * pleurethmo?de [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000134] - * ?thmo?de lat?ral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * lateral ethmoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000226, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * parethmo?de [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000141 ] + * pleurethmo?de [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000134 ] + * ?thmo?de lat?ral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -43,7 +43,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000426.md b/md/UBERON/26/UBERON_2000426.md index 28f33de4f6..59e1500bc1 100644 --- a/md/UBERON/26/UBERON_2000426.md +++ b/md/UBERON/26/UBERON_2000426.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000526.md b/md/UBERON/26/UBERON_2000526.md index cd4051ef27..13e04d8267 100644 --- a/md/UBERON/26/UBERON_2000526.md +++ b/md/UBERON/26/UBERON_2000526.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000526 * *Label* = intermuscular bone - * *Definition* = Axial bone which is a segmental ossification that forms in the myoseptum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Axial bone which is a segmental ossification that forms in the myoseptum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Intermuscular bones are found in teleosts fishes only. ## Synonyms - * m?tamyoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000147] - * m?taxymyoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000153] - * os intermusculaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * m?tamyoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000147 ] + * m?taxymyoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000153 ] + * os intermusculaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000626.md b/md/UBERON/26/UBERON_2000626.md index c8cd2e3196..de98eb0946 100644 --- a/md/UBERON/26/UBERON_2000626.md +++ b/md/UBERON/26/UBERON_2000626.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000726.md b/md/UBERON/26/UBERON_2000726.md index cba8de8d9f..66bcb46003 100644 --- a/md/UBERON/26/UBERON_2000726.md +++ b/md/UBERON/26/UBERON_2000726.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000726 * *Label* = somite 14 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 14 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000826.md b/md/UBERON/26/UBERON_2000826.md index 057b31c960..2d5c7dbb73 100644 --- a/md/UBERON/26/UBERON_2000826.md +++ b/md/UBERON/26/UBERON_2000826.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2000926.md b/md/UBERON/26/UBERON_2000926.md index 48c802c813..6b33ff6698 100644 --- a/md/UBERON/26/UBERON_2000926.md +++ b/md/UBERON/26/UBERON_2000926.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000926 * *Label* = myotome somite 12 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001026.md b/md/UBERON/26/UBERON_2001026.md index 045ec00f1c..2ca68bdc7e 100644 --- a/md/UBERON/26/UBERON_2001026.md +++ b/md/UBERON/26/UBERON_2001026.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001026 * *Label* = supraorbital lateral line neuromast - * *Definition* = A neuromast that is part of the supraorbital lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A neuromast that is part of the supraorbital lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast supraorbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001026] - * neuromasts supraorbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001026[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neuromast supraorbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001026 ] + * neuromasts supraorbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001026, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromast](../../UBERON/04/UBERON_0008904.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraorbital lateral line](../../UBERON/90/UBERON_0003090.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001026 + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001126.md b/md/UBERON/26/UBERON_2001126.md index 23fe22b07d..b2e8151d47 100644 --- a/md/UBERON/26/UBERON_2001126.md +++ b/md/UBERON/26/UBERON_2001126.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001126 * *Label* = noninvoluting endocytic marginal cell cluster - * *Definition* = The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * NEM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001126] - * noninvoluting endocytic marginal cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001126[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * NEM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001126 ] + * noninvoluting endocytic marginal cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001126, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001226.md b/md/UBERON/26/UBERON_2001226.md index 6ada4ea55a..7fc9538a15 100644 --- a/md/UBERON/26/UBERON_2001226.md +++ b/md/UBERON/26/UBERON_2001226.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001226 * *Label* = basibranchial 4 bone - * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). Develops in posterior copula cartilage or basibranchial 4 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basibranchial bone that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). Develops in posterior copula cartilage or basibranchial 4 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 4 element](../../UBERON/18/UBERON_2001918.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001426.md b/md/UBERON/26/UBERON_2001426.md index 92f697fe57..d04d04cc7d 100644 --- a/md/UBERON/26/UBERON_2001426.md +++ b/md/UBERON/26/UBERON_2001426.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior nostril [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001426] + * posterior nostril [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001426 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001526.md b/md/UBERON/26/UBERON_2001526.md index 45ff5ece9d..6988c2a5df 100644 --- a/md/UBERON/26/UBERON_2001526.md +++ b/md/UBERON/26/UBERON_2001526.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001526 * *Label* = hypobranchial 3 cartilage - * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001626.md b/md/UBERON/26/UBERON_2001626.md index 334e176c98..f839e76b03 100644 --- a/md/UBERON/26/UBERON_2001626.md +++ b/md/UBERON/26/UBERON_2001626.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001626 * *Label* = premaxillary tooth - * *Definition* = Tooth that is attached to the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [premaxilla](../../UBERON/44/UBERON_0002244.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001726.md b/md/UBERON/26/UBERON_2001726.md index 37332e7329..5c43d35bd9 100644 --- a/md/UBERON/26/UBERON_2001726.md +++ b/md/UBERON/26/UBERON_2001726.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001726 * *Label* = caudal principal ray 14 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 13. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 13. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001826.md b/md/UBERON/26/UBERON_2001826.md index 89034da8ed..68544e3c50 100644 --- a/md/UBERON/26/UBERON_2001826.md +++ b/md/UBERON/26/UBERON_2001826.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001826 * *Label* = urohyal median process - * *Definition* = Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2001926.md b/md/UBERON/26/UBERON_2001926.md index 6cc4994e08..e05c4e49f7 100644 --- a/md/UBERON/26/UBERON_2001926.md +++ b/md/UBERON/26/UBERON_2001926.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001926 * *Label* = posterior myodome - * *Definition* = Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2002026.md b/md/UBERON/26/UBERON_2002026.md index 1db01a2a23..fdd3b0be6d 100644 --- a/md/UBERON/26/UBERON_2002026.md +++ b/md/UBERON/26/UBERON_2002026.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002026 * *Label* = pectoral fin proximal radial bone 1 - * *Definition* = pectoral fin proximal radial 1 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 1 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002026] + * first pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002026 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin proximal radial element 1](../../UBERON/26/UBERON_2102026.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2002126.md b/md/UBERON/26/UBERON_2002126.md index 18e7cacfc4..1965419d08 100644 --- a/md/UBERON/26/UBERON_2002126.md +++ b/md/UBERON/26/UBERON_2002126.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002126 * *Label* = caudal-fin ray pump - * *Definition* = Anatomical cluster that consists of thickened caudal-fin rays modified into a pumping mechanism associated with the caudal-fin organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of thickened caudal-fin rays modified into a pumping mechanism associated with the caudal-fin organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Caudal fin rays can vary in thickness and form of the pump can vary from a simple open groove to complex chambered structure. Definition reference: @@ -37,7 +37,9 @@ Porto Alegre: EDIPUCRS. p 171-192. * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2002226.md b/md/UBERON/26/UBERON_2002226.md index 761848bf8e..2286ddad0d 100644 --- a/md/UBERON/26/UBERON_2002226.md +++ b/md/UBERON/26/UBERON_2002226.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002226 * *Label* = preglomerular nucleus - * *Definition* = Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2005026.md b/md/UBERON/26/UBERON_2005026.md index 1f4684d74e..9397538dd1 100644 --- a/md/UBERON/26/UBERON_2005026.md +++ b/md/UBERON/26/UBERON_2005026.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005026 * *Label* = primary head sinus - * *Definition* = Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PHS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005026] - * lateral head vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005026] + * PHS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005026 ] + * lateral head vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005026 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2005126.md b/md/UBERON/26/UBERON_2005126.md index f98e137e7c..2eeb459565 100644 --- a/md/UBERON/26/UBERON_2005126.md +++ b/md/UBERON/26/UBERON_2005126.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005126 * *Label* = intestinal bulb epithelium - * *Definition* = Intestinal epithelium which lines the lumen of the intestinal bulb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Intestinal epithelium which lines the lumen of the intestinal bulb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2005226.md b/md/UBERON/26/UBERON_2005226.md index 36d3f535dc..5a2512ebe1 100644 --- a/md/UBERON/26/UBERON_2005226.md +++ b/md/UBERON/26/UBERON_2005226.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005226 * *Label* = median fin proximal radial bone - * *Definition* = median fin proximal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = median fin proximal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * basoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000138] - * ptrygiophore proximal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * basoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000138 ] + * ptrygiophore proximal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [median fin proximal radial element](../../UBERON/26/UBERON_2105226.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2005326.md b/md/UBERON/26/UBERON_2005326.md index 6138497731..1946450eaf 100644 --- a/md/UBERON/26/UBERON_2005326.md +++ b/md/UBERON/26/UBERON_2005326.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005326 * *Label* = obsolete NaK ionocyte - * *Definition* = Integument ionocyte rich in Na,K-ATPase. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Integument ionocyte rich in Na,K-ATPase. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * NaK-MRC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005326] - * NaR cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005326] + * NaK-MRC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005326 ] + * NaR cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005326 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/26/UBERON_2007026.md b/md/UBERON/26/UBERON_2007026.md index 88789a99a8..2ff19c8d5d 100644 --- a/md/UBERON/26/UBERON_2007026.md +++ b/md/UBERON/26/UBERON_2007026.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2102026.md b/md/UBERON/26/UBERON_2102026.md index 9795000d54..abf7d2d02e 100644 --- a/md/UBERON/26/UBERON_2102026.md +++ b/md/UBERON/26/UBERON_2102026.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2102026 * *Label* = pectoral fin proximal radial element 1 - * *Definition* = Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral fin proximal radial element that is the most anterior or dorsal pectoral fin radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * first pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002026] + * first pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002026 ] ## Cross-references @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2105226.md b/md/UBERON/26/UBERON_2105226.md index 8553c0e8d2..a4fe9dcddb 100644 --- a/md/UBERON/26/UBERON_2105226.md +++ b/md/UBERON/26/UBERON_2105226.md @@ -6,8 +6,8 @@ ## Synonyms - * basoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000138] - * ptrygiophore proximal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * basoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000138 ] + * ptrygiophore proximal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2202026.md b/md/UBERON/26/UBERON_2202026.md index 29495762d6..a1743d4c6d 100644 --- a/md/UBERON/26/UBERON_2202026.md +++ b/md/UBERON/26/UBERON_2202026.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202026 * *Label* = pectoral fin proximal radial cartilage 1 - * *Definition* = pectoral fin proximal radial 1 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 1 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first pectoral basal radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002026] + * first pectoral basal radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002026 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin proximal radial element 1](../../UBERON/26/UBERON_2102026.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_2205226.md b/md/UBERON/26/UBERON_2205226.md index 343c56e558..9bd8954f58 100644 --- a/md/UBERON/26/UBERON_2205226.md +++ b/md/UBERON/26/UBERON_2205226.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205226 * *Label* = median fin proximal radial cartilage - * *Definition* = median fin proximal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = median fin proximal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * ptrygiophore proximal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * ptrygiophore proximal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [median fin proximal radial element](../../UBERON/26/UBERON_2105226.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_3000226.md b/md/UBERON/26/UBERON_3000226.md index 4c2c44c844..527d9e4725 100644 --- a/md/UBERON/26/UBERON_3000226.md +++ b/md/UBERON/26/UBERON_3000226.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000226 * *Label* = hyolaryngeal complex - * *Definition* = Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_3010126.md b/md/UBERON/26/UBERON_3010126.md index 1b2ae87060..678021f628 100644 --- a/md/UBERON/26/UBERON_3010126.md +++ b/md/UBERON/26/UBERON_3010126.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010126 * *Label* = middle lateral line nerve (MLLN) - * *Definition* = Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Sensory nerve of the posterior lateral line component. It develops from the postotic middle placode. MLLN innervates neuromasts located over the otic capsule and the suprabranchial line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_3010226.md b/md/UBERON/26/UBERON_3010226.md index 26fd1d5fcc..8d46c389fa 100644 --- a/md/UBERON/26/UBERON_3010226.md +++ b/md/UBERON/26/UBERON_3010226.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_3010326.md b/md/UBERON/26/UBERON_3010326.md index 24ff90cef2..e2d958b280 100644 --- a/md/UBERON/26/UBERON_3010326.md +++ b/md/UBERON/26/UBERON_3010326.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010326 * *Label* = obsolete blastocoel anlage - * *Definition* = The first appearance of the antomical space that will become the blastocoel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:curator] + * *Definition* = The first appearance of the antomical space that will become the blastocoel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:curator ] ## Synonyms @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/26/UBERON_3010626.md b/md/UBERON/26/UBERON_3010626.md index 2c207c8f83..3c7dbfed7d 100644 --- a/md/UBERON/26/UBERON_3010626.md +++ b/md/UBERON/26/UBERON_3010626.md @@ -6,7 +6,7 @@ ## Synonyms - * Merkel cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010626] + * Merkel cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010626 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000242 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/26/UBERON_3010726.md b/md/UBERON/26/UBERON_3010726.md index 5f4d5e8488..d5dc9fbb68 100644 --- a/md/UBERON/26/UBERON_3010726.md +++ b/md/UBERON/26/UBERON_3010726.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010726 * *Label* = ramus muscularis of glossopharyngeus nerve - * *Definition* = Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_4200026.md b/md/UBERON/26/UBERON_4200026.md index 63895571f4..3620841761 100644 --- a/md/UBERON/26/UBERON_4200026.md +++ b/md/UBERON/26/UBERON_4200026.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = ad - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_4200126.md b/md/UBERON/26/UBERON_4200126.md index 0b8c654429..3903b7bc2f 100644 --- a/md/UBERON/26/UBERON_4200126.md +++ b/md/UBERON/26/UBERON_4200126.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/26/UBERON_4300026.md b/md/UBERON/26/UBERON_4300026.md index d94fff75f2..2a88414395 100644 --- a/md/UBERON/26/UBERON_4300026.md +++ b/md/UBERON/26/UBERON_4300026.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300026 * *Label* = anterior ventrolateral plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms - * AVL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * AVL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0000127.md b/md/UBERON/27/UBERON_0000127.md index dbcd8bb1a9..caa2d65393 100644 --- a/md/UBERON/27/UBERON_0000127.md +++ b/md/UBERON/27/UBERON_0000127.md @@ -7,10 +7,10 @@ ## Synonyms - * facial VII nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001014] + * facial VII nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001014 ] * facial nerve nucleus - * nucleus of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54572] - * facial VII motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001014] + * nucleus of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54572 ] + * facial VII motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001014 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:54572 * MA:0001014 * SCTID:280166009 - * UMLS:C0228740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Nerve_Nucleus] + * UMLS:C0228740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Nerve_Nucleus ] * VHOG:0001412 * ncithesaurus:Facial_Nerve_Nucleus @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0000427.md b/md/UBERON/27/UBERON_0000427.md index 72246428f1..9ffe345d4a 100644 --- a/md/UBERON/27/UBERON_0000427.md +++ b/md/UBERON/27/UBERON_0000427.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Cytotrophoblastic_Cell - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000427 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_0000927.md b/md/UBERON/27/UBERON_0000927.md index bb28ec95c9..f17f3be98d 100644 --- a/md/UBERON/27/UBERON_0000927.md +++ b/md/UBERON/27/UBERON_0000927.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000927 * *Label* = mesectoderm - * *Definition* = A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0089570] + * *Definition* = A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0089570 ] * *Comment* = Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD] ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesectodermal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001027.md b/md/UBERON/27/UBERON_0001027.md index 3e8fd0da1a..12f0ee17c9 100644 --- a/md/UBERON/27/UBERON_0001027.md +++ b/md/UBERON/27/UBERON_0001027.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001027 * *Label* = sensory nerve - * *Definition* = A group of neurons that provides a nervous response from a tissue[AEO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000201[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_nerve] + * *Definition* = A group of neurons that provides a nervous response from a tissue[AEO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000201, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * nervus sensorius * afferent nerve - * nervus sensorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus sensorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP][Wikipedia:Sensory_nerve]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001127.md b/md/UBERON/27/UBERON_0001127.md index 5c7d32bb64..b688449518 100644 --- a/md/UBERON/27/UBERON_0001127.md +++ b/md/UBERON/27/UBERON_0001127.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001127 * *Label* = serratus dorsalis inferior muscle - * *Definition* = A muscle that originates from the vertebrae and inserts in the ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serratus_posterior_inferior_muscle] + * *Definition* = A muscle that originates from the vertebrae and inserts in the ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serratus_posterior_inferior_muscle ] ## Synonyms * inferior serratus dorsalis * serratus dorsalis caudalis - * serratus posterior inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13402] + * serratus posterior inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13402 ] * posterior serratus - * serratus posterior inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002376] + * serratus posterior inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002376 ] ## Cross-references * FMA:13402 * MA:0002376 * SCTID:244936008 - * UMLS:C1711277 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Serratus_Dorsalis_Caudalis] + * UMLS:C1711277 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Serratus_Dorsalis_Caudalis ] * Wikipedia:Serratus_posterior_inferior_muscle * http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/250px-Serratus_posterior.PNG @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001227.md b/md/UBERON/27/UBERON_0001227.md index bcc30f013f..20ea1998f0 100644 --- a/md/UBERON/27/UBERON_0001227.md +++ b/md/UBERON/27/UBERON_0001227.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001227 * *Label* = minor calyx - * *Definition* = The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Minor_calyx] + * *Definition* = The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Minor_calyx ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * minor calix - * calices renales minores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Minor_calyx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * calices renales minores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Minor_calyx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001327.md b/md/UBERON/27/UBERON_0001327.md index bac1b429be..e29cc17460 100644 --- a/md/UBERON/27/UBERON_0001327.md +++ b/md/UBERON/27/UBERON_0001327.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001327 * *Label* = coccygeus muscle - * *Definition* = The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coccygeus_muscle] + * *Definition* = The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coccygeus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * coccygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002277] + * coccygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002277 ] * ischiococcygeus - * musculus ischiococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19088[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus coccygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coccygeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus ischiococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19088, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus coccygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coccygeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001427.md b/md/UBERON/27/UBERON_0001427.md index 2d7425c1e9..94acbfc8a0 100644 --- a/md/UBERON/27/UBERON_0001427.md +++ b/md/UBERON/27/UBERON_0001427.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001427 * *Label* = scaphoid - * *Definition* = The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the manus and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scaphoid] + * *Definition* = The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the manus and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scaphoid ] * *Comment* = todo - check AAO placement; in rodents this is fused with the lunate to make the scapholunate ## Synonyms @@ -14,11 +14,11 @@ * scaphoid bone * navicular of hand * navicular of manus - * os naviculare manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scaphoid_bone] - * os scaphoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scaphoid_bone] + * os naviculare manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scaphoid_bone ] + * os scaphoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scaphoid_bone ] * radial carpal bone - * radiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000790[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scaphoid] - * scaphoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scaphoid_bone] + * radiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000790, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scaphoid ] + * scaphoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scaphoid_bone ] ## Cross-references @@ -29,7 +29,7 @@ * MESH:A02.835.232.087.144.650 * OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA * SCTID:181958008 - * UMLS:C0223724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scaphoid_Bone] + * UMLS:C0223724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scaphoid_Bone ] * Wikipedia:Scaphoid * galen:Scaphoid * http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two element that constitute the basal row of carpals. It articulates proximally with the radius, mesially with the ulnare (or pars intermedia of the ulnare when the ulnare is fused to the intermedium) and distally with the centrale (also recognized by some authors as element Y). This element originates from one or two condensation centers. Occasionally it may fuse to carpal 5(4), the ulnare, or other elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001527.md b/md/UBERON/27/UBERON_0001527.md index 19ee308874..efdf227b33 100644 --- a/md/UBERON/27/UBERON_0001527.md +++ b/md/UBERON/27/UBERON_0001527.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001527 * *Label* = abductor pollicis longus - * *Definition* = The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_longus_muscle] + * *Definition* = The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_longus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * abductor pollicis longus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_longus_muscle] - * musculus abductor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abductor pollicis longus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_longus_muscle ] + * musculus abductor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:38515 * MA:0002266 * SCTID:256671001 - * UMLS:C0224278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abductor_Pollicis_Longus] + * UMLS:C0224278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abductor_Pollicis_Longus ] * Wikipedia:Abductor_pollicis_longus_muscle * http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001627.md b/md/UBERON/27/UBERON_0001627.md index 62f0a92f9e..228a0fd916 100644 --- a/md/UBERON/27/UBERON_0001627.md +++ b/md/UBERON/27/UBERON_0001627.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001627 * *Label* = middle cerebral artery - * *Definition* = The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cerebral_artery] + * *Definition* = The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cerebral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * sylvian artery - * arteria cerebri media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cerebral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria cerebri media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cerebral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A07.231.114.228.550 * OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA * SCTID:181312002 - * UMLS:C0149566 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Cerebral_Artery] + * UMLS:C0149566 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Cerebral_Artery ] * Wikipedia:Middle_cerebral_artery * http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001727.md b/md/UBERON/27/UBERON_0001727.md index b58851657f..1f55c122d0 100644 --- a/md/UBERON/27/UBERON_0001727.md +++ b/md/UBERON/27/UBERON_0001727.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001727 * *Label* = taste bud - * *Definition* = Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud] + * *Definition* = Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud ] * *Comment* = Development notes: arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN10:1607950324 (todo - request cell terms from CL) Taste buds form in greatest concentration on the dorsal surface of the tongue ## Synonyms - * tastebud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud] - * caliculus gustatorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * caliculus gustatorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * taste buds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * taste-bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud] - * tastebuds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Taste_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tastebud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud ] + * caliculus gustatorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * caliculus gustatorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * taste buds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * taste-bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud ] + * tastebuds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Taste_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,8 +29,8 @@ * OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA * SCTID:362099006 * TAO:0001074 - * UMLS:C0039337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4101] - * UMLS:C0039337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Taste_Bud] + * UMLS:C0039337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4101 ] + * UMLS:C0039337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Taste_Bud ] * VHOG:0000130 * Wikipedia:Taste_bud * XAO:0000445 @@ -67,8 +67,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of a number of receptor cell nests located in the epithelium of the papillae of the tongue and in the soft palate, epiglottis, and pharynx that mediate the sense of taste. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Experients in amphibia have shown that an intrinsic feature of the pharyngeal endoderm is its ability to generate taste buds and this capacity must have been acquired by the endoderm at the origin of the vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001827.md b/md/UBERON/27/UBERON_0001827.md index 19deb2b482..ed3c30ff36 100644 --- a/md/UBERON/27/UBERON_0001827.md +++ b/md/UBERON/27/UBERON_0001827.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001827 * *Label* = lacrimal gland secretion - * *Definition* = A substance secreted the lacrimal gland.[Automatically generated definition] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatical[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tear] + * *Definition* = A substance secreted the lacrimal gland.[Automatically generated definition] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatical, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tear ] ## Synonyms * lacrimal secretion - * tear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59756] - * tears [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * tear fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001499] + * tear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59756 ] + * tears [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * tear fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001499 ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:1173 * MA:0002508 * MESH:A12.200.882 - * UMLS:C0039409 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tear] + * UMLS:C0039409 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tear ] * Wikipedia:Tear * galen:Tear * galen:Tears @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [lacrimal gland](../../UBERON/17/UBERON_0001817.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0001927.md b/md/UBERON/27/UBERON_0001927.md index 1bb411f3f7..bdc9aad5ba 100644 --- a/md/UBERON/27/UBERON_0001927.md +++ b/md/UBERON/27/UBERON_0001927.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001927 * *Label* = medial geniculate body - * *Definition* = The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_geniculate_body] + * *Definition* = The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_geniculate_body ] ## Synonyms - * corpus geniculatum mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1670] + * corpus geniculatum mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1670 ] * medial geniculate complex * medial geniculate nuclei * medial geniculate nucleus - * nuclei corporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62211[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * MGN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1670[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * MGB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002674] - * corpus geniculatus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:355[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Internal_Geniculate_Body] - * medial geniculate complex of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MG] - * nucleus corporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:355[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus geniculatus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:355[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei corporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62211, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * MGN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1670, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * MGB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002674 ] + * corpus geniculatus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:355, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Internal_Geniculate_Body ] + * medial geniculate complex of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MG ] + * nucleus corporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:355, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus geniculatus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:355, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,10 +32,10 @@ * FMA:62211 * MA:0000870 * NIF_GrossAnatomy:birnlex_1670 - * NeuroNames:355 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1670] + * NeuroNames:355 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1670 ] * SCTID:362378001 - * UMLS:C0086596 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1670] - * UMLS:C0086596 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Geniculate_Body] + * UMLS:C0086596 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1670 ] + * UMLS:C0086596 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Geniculate_Body ] * Wikipedia:Medial_geniculate_body * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png * ncithesaurus:Internal_Geniculate_Body @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002027.md b/md/UBERON/27/UBERON_0002027.md index 68416cfcca..a2aaeecdb5 100644 --- a/md/UBERON/27/UBERON_0002027.md +++ b/md/UBERON/27/UBERON_0002027.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002027 * *Label* = stratum corneum of epidermis - * *Definition* = outermost cornified layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_corneum] + * *Definition* = outermost cornified layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_corneum ] * *Comment* = Note that some oral epitehlium also has cornified layer / stratum corneum ## Synonyms * cornified layer * epidermis stratum corneum - * horny layer of epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67545] - * horny layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000344] + * horny layer of epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67545 ] + * horny layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000344 ] * stratum corneum - * stratum corneum epidermidis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_corneum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stratum corneum epidermidis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_corneum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:67545 * MA:0000804 * SCTID:361695002 - * UMLS:C0221921 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Corneum] + * UMLS:C0221921 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Corneum ] * Wikipedia:Stratum_corneum * http://upload.wikimedia.org/wikipedia/commons/e/e4/Epidermal_layers.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Skinlayers.png/200px-Skinlayers.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The keratinized outermost layer of the epidermis, which is periodically shed.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = this skin layer is composed mainly of dead cells that lack nuclei. As these dead cells slough off on the surface in the thin air-filled stratum disjunctum, they are continuously replaced by new cells from the stratum germinativum (basale). In the human forearm, for example, about 1300 cells/cm2/hr are shed. This outer layer that is sloughed off is also known as the stratum dysjunctum. Cells of the stratum corneum contain keratin, a protein that helps keep the skin hydrated by preventing water evaporation. These cells can also absorb water, further aiding in hydration, and explaining why humans and other animals experience wrinkling of the skin on the fingers and toes ('pruning') when immersed in water for prolonged periods. In addition, this layer is responsible for the 'spring back' or stretchy properties of skin. A weak glutenous protein bond pulls the skin back to its natural shape. The thickness of the stratum corneum varies according to the amount of protection and/or grip required by a region of the body. For example, the hands are typically used to grasp objects, requiring the palms to be covered with a thick stratum corneum. In a similar manner, the sole of the foot is prone to injury, and so it is protected with a thick stratum corneum layer. In general, the stratum corneum contains 15 to 20 layers of dead cells. The stratum corneum has a thickness between 10 and 40 ?m. n reptiles, the stratum corneum is permanent, and is replaced only during times of rapid growth, in a process called ecdysis or moulting. The stratum corneum in reptiles contains beta-keratin, which provides a much more rigid skin layer. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002127.md b/md/UBERON/27/UBERON_0002127.md index 8810a535a0..8dd660007d 100644 --- a/md/UBERON/27/UBERON_0002127.md +++ b/md/UBERON/27/UBERON_0002127.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002127 * *Label* = inferior olivary complex - * *Definition* = largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_olivary_nucleus] + * *Definition* = largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_olivary_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * inferior olivary nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72243] - * inferior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72243] - * oliva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72243[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * caudal olivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002298] - * complexus olivaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002298] - * complexus olivaris inferior; nuclei olivares inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_olivary_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior olivary complex (Vieussens) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:748] - * inferior olivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002298] - * inferior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72243] - * nuclei olivares caudales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002298] - * nuclei olivares inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002298] - * nucleus olivaris caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:748[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus olivaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:748[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio olivaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:748[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior olivary nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72243 ] + * inferior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72243 ] + * oliva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72243, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * caudal olivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002298 ] + * complexus olivaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002298 ] + * complexus olivaris inferior; nuclei olivares inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_olivary_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior olivary complex (Vieussens) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:748 ] + * inferior olivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002298 ] + * inferior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72243 ] + * nuclei olivares caudales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002298 ] + * nuclei olivares inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002298 ] + * nucleus olivaris caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:748, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus olivaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:748, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio olivaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:748, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,9 +34,9 @@ * FMA:72243 * MA:0001040 * NIF_GrossAnatomy:birnlex_1164 - * NeuroNames:748 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1164] + * NeuroNames:748 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1164 ] * TAO:0000215 - * UMLS:C0228540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1164] + * UMLS:C0228540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1164 ] * VHOG:0001627 * Wikipedia:Inferior_olivary_nucleus * ZFA:0000215 @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The inferior olive appears to be present in all vertebrate classes and is particularly well developed in species with a well-developed cerebellum.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002227.md b/md/UBERON/27/UBERON_0002227.md index f3bf4622e2..05d6ed5cc3 100644 --- a/md/UBERON/27/UBERON_0002227.md +++ b/md/UBERON/27/UBERON_0002227.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002227 * *Label* = spiral organ of cochlea - * *Definition* = The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organ_of_Corti] + * *Definition* = The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organ_of_Corti ] ## Synonyms * cochlear spiral organ - * organum spirale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organ_of_Corti[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organum spirale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organ_of_Corti, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spiral organ * spiral organ of Corti - * Corti's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001691] - * basilar papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003145[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * Corti's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001691 ] + * basilar papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003145, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * organ of Corti - * papilla basilaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003145[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * papilla basilaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003145, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,8 +29,8 @@ * MA:0001193 * NIF_GrossAnatomy:birnlex_2526 * SCTID:279841009 - * UMLS:C0029207 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2526] - * UMLS:C0029207 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Organ_of_Corti] + * UMLS:C0029207 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2526 ] + * UMLS:C0029207 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Organ_of_Corti ] * VHOG:0001567 * Wikipedia:Organ_of_Corti * http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The auditory hair cells in tetrapods are located in the inner ear in a structure known as the basilar papilla. In mammals this structure (along with some related structure) is called the organ of Corti.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002327.md b/md/UBERON/27/UBERON_0002327.md index cdba616964..024a7513d7 100644 --- a/md/UBERON/27/UBERON_0002327.md +++ b/md/UBERON/27/UBERON_0002327.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002427.md b/md/UBERON/27/UBERON_0002427.md index 561612a082..30e423f402 100644 --- a/md/UBERON/27/UBERON_0002427.md +++ b/md/UBERON/27/UBERON_0002427.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002427 * *Label* = arm skin - * *Definition* = A zone of skin that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brachial region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brachial region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:18062 * FMA:37721 * MA:0000596 - * UMLS:C0222204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arm_Skin] + * UMLS:C0222204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arm_Skin ] * ncithesaurus:Arm_Skin ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002527.md b/md/UBERON/27/UBERON_0002527.md index 51697af039..6e89db3b44 100644 --- a/md/UBERON/27/UBERON_0002527.md +++ b/md/UBERON/27/UBERON_0002527.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002527 * *Label* = pancreatic lymph node - * *Definition* = A lymph node that is part of a pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymph node that is part of a pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lymph node of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pancreas lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lymph node of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pancreas lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * pancreatic node - * pyloric lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002881] + * pyloric lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002881 ] ## Cross-references * FMA:16626 * MA:0002881 * SCTID:276170003 - * UMLS:C0229783 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Lymph_Node] + * UMLS:C0229783 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Lymph_Node ] * ncithesaurus:Pancreatic_Lymph_Node ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pancreas](../../UBERON/64/UBERON_0001264.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002627.md b/md/UBERON/27/UBERON_0002627.md index 01c01b5380..179a7a1fa4 100644 --- a/md/UBERON/27/UBERON_0002627.md +++ b/md/UBERON/27/UBERON_0002627.md @@ -6,16 +6,16 @@ ## Synonyms - * capsula corporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1214] - * medial geniculate body capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62049] - * capsule of the medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:359] + * capsula corporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1214 ] + * medial geniculate body capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62049 ] + * capsule of the medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:359 ] ## Cross-references * BAMS:cmg * FMA:62049 * NIF_GrossAnatomy:birnlex_1214 - * NeuroNames:359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1214] + * NeuroNames:359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1214 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002727.md b/md/UBERON/27/UBERON_0002727.md index 9a0491fb53..8f4dad458a 100644 --- a/md/UBERON/27/UBERON_0002727.md +++ b/md/UBERON/27/UBERON_0002727.md @@ -6,26 +6,26 @@ ## Synonyms - * inner medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * internal medullary lamina of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * internal medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * internal medullary lamina of lentiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * lamina medullaris interna corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris medialis corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * medial medullary lamina of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * medial medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * medial medullary lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * medial medullary stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62470] - * globus pallidus, lamina medullaris interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal medullary l. of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002251] - * l. medullaris interna corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002251] - * lamella pallidi interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris interna pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina pallidi interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial medullary lamina of the globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mml] - * medial medullary stria of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002251] + * inner medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * internal medullary lamina of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * internal medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * internal medullary lamina of lentiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * lamina medullaris interna corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris medialis corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * medial medullary lamina of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * medial medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * medial medullary lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * medial medullary stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62470 ] + * globus pallidus, lamina medullaris interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal medullary l. of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002251 ] + * l. medullaris interna corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002251 ] + * lamella pallidi interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris interna pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina pallidi interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial medullary lamina of the globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mml ] + * medial medullary stria of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002251 ] ## Cross-references @@ -33,9 +33,9 @@ * BTO:0002251 * FMA:62470 * NIF_GrossAnatomy:birnlex_1501 - * NeuroNames:235 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1501] + * NeuroNames:235 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1501 ] * SCTID:369205003 - * UMLS:C0152340 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1501] + * UMLS:C0152340 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1501 ] ## Subsets @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0002827.md b/md/UBERON/27/UBERON_0002827.md index dfe0463316..fed8be9648 100644 --- a/md/UBERON/27/UBERON_0002827.md +++ b/md/UBERON/27/UBERON_0002827.md @@ -7,19 +7,19 @@ ## Synonyms - * acoustic ganglion VIII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16982] - * acoustico-vestibular VIII ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002196] - * auditory ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000588] - * gVIII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000588] + * acoustic ganglion VIII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16982 ] + * acoustico-vestibular VIII ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002196 ] + * auditory ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000588 ] + * gVIII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000588 ] * ganglion VIII - * statoacoustic (VIII) ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000588] - * statoacoustic ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000588] - * vestibulocochlear VIII ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001084] - * SAG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000588] - * acoustic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000696] - * nucleus nervi oculomotorii ventrolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:496[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi oculomotorii, pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:496[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * statoacoustic VIII ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000696] + * statoacoustic (VIII) ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000588 ] + * statoacoustic ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000588 ] + * vestibulocochlear VIII ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001084 ] + * SAG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000588 ] + * acoustic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000696 ] + * nucleus nervi oculomotorii ventrolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:496, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi oculomotorii, pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:496, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * statoacoustic VIII ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000696 ] ## Cross-references @@ -31,9 +31,9 @@ * EMAPA:17571 * MA:0001084 * NIF_GrossAnatomy:birnlex_2564 - * NeuroNames:496 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2564] + * NeuroNames:496 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2564 ] * TAO:0000588 - * UMLS:C0037959 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2564] + * UMLS:C0037959 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2564 ] * VHOG:0000696 * XAO:0004142 * ZFA:0000588 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (During the development of the inner ear in a vertebrate embryo) As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003027.md b/md/UBERON/27/UBERON_0003027.md index 614fb07d7b..58422b2b7a 100644 --- a/md/UBERON/27/UBERON_0003027.md +++ b/md/UBERON/27/UBERON_0003027.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003027 * *Label* = cingulate cortex - * *Definition* = The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cingulate_cortex] + * *Definition* = The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cingulate_cortex ] ## Synonyms - * gyrus cingulatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cingulate_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus cinguli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * gyrus cingulatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cingulate_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus cinguli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -17,8 +17,8 @@ * EFO:0000343 * MA:0000904 * NIF_GrossAnatomy:birnlex_934 - * UMLS:C0598179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_934] - * UMLS:C0598179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cingulate_Cortex] + * UMLS:C0598179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_934 ] + * UMLS:C0598179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cingulate_Cortex ] * Wikipedia:Cingulate_cortex * http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003127.md b/md/UBERON/27/UBERON_0003127.md index ebac323427..54ec99b60f 100644 --- a/md/UBERON/27/UBERON_0003127.md +++ b/md/UBERON/27/UBERON_0003127.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003127 * *Label* = open tracheal system trachea - * *Definition* = A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007424[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Invertebrate_trachea] + * *Definition* = A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007424, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Invertebrate_trachea ] * *Comment* = TODO check if is_a epithelium ## Synonyms * invertebrate trachea - * trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005043[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005043, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003327.md b/md/UBERON/27/UBERON_0003327.md index 2e77c6e899..71b022e68b 100644 --- a/md/UBERON/27/UBERON_0003327.md +++ b/md/UBERON/27/UBERON_0003327.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003327 * *Label* = mesenchyme of forearm - * *Definition* = Mesenchyme that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antebrachial region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -58,7 +58,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms @@ -66,8 +66,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003427.md b/md/UBERON/27/UBERON_0003427.md index 6e8a05c044..c7fc587918 100644 --- a/md/UBERON/27/UBERON_0003427.md +++ b/md/UBERON/27/UBERON_0003427.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003427 * *Label* = abdominal fat pad - * *Definition* = the encapsulated adipose tissue in the abdomen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000010] + * *Definition* = the encapsulated adipose tissue in the abdomen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000010 ] ## Synonyms - * abdomen fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * abdominal fat depot - * fat pad of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fat pad of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003527.md b/md/UBERON/27/UBERON_0003527.md index be31f1f8b4..e595febb60 100644 --- a/md/UBERON/27/UBERON_0003527.md +++ b/md/UBERON/27/UBERON_0003527.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003527 * *Label* = kidney capillary - * *Definition* = A capillary that is part of a kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capillary that is part of a kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood capillary of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood capillary of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capillary](../../UBERON/82/UBERON_0001982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003727.md b/md/UBERON/27/UBERON_0003727.md index 4227843a70..67d7456853 100644 --- a/md/UBERON/27/UBERON_0003727.md +++ b/md/UBERON/27/UBERON_0003727.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003727 * *Label* = intercostal nerve - * *Definition* = The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_nerves] + * *Definition* = The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_nerves ] ## Synonyms - * anterior ramus of thoracic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6028] - * anterior ramus of thoracic spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6028] - * ramus anterior, nervus thoracicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6028] - * thoracic anterior ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6028] - * ventral ramus of thoracic spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6028] - * nervi intercostales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_nerves[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior ramus of thoracic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6028 ] + * anterior ramus of thoracic spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6028 ] + * ramus anterior, nervus thoracicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6028 ] + * thoracic anterior ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6028 ] + * ventral ramus of thoracic spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6028 ] + * nervi intercostales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_nerves, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:858 * MESH:A08.800.800.720.800.350 * SCTID:279568001 - * UMLS:C1285089 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intercostal_Nerve] + * UMLS:C1285089 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intercostal_Nerve ] * Wikipedia:Intercostal_nerves * http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray819.png/200px-Gray819.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003827.md b/md/UBERON/27/UBERON_0003827.md index 9e53b945bd..32982be0d2 100644 --- a/md/UBERON/27/UBERON_0003827.md +++ b/md/UBERON/27/UBERON_0003827.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003827 * *Label* = thoracic segment bone - * *Definition* = A bone that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper body bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000559] + * bone of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper body bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000559 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0003927.md b/md/UBERON/27/UBERON_0003927.md index 83abdfb1ff..1dd5a4d4b7 100644 --- a/md/UBERON/27/UBERON_0003927.md +++ b/md/UBERON/27/UBERON_0003927.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003927 * *Label* = obsolete macula lagena - * *Definition* = This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000116 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003927 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_0004027.md b/md/UBERON/27/UBERON_0004027.md index a2f80c57cf..75fc171aa5 100644 --- a/md/UBERON/27/UBERON_0004027.md +++ b/md/UBERON/27/UBERON_0004027.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004027 * *Label* = chorionic plate - * *Definition* = hat portion of the chorionic wall in the region of its uterine attachment, which gives rise to chorionic villi; it consists of the mesoderm that lines the chorionic vesicle and, on the maternal side, of the trophoblast that lines the intervillous spaces; in the last half of gestation, the mesodermal connective tissue is largely replaced by fibrinoid material, and the amnionic membrane is adherent to the fetal side of the plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004560[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=69523] + * *Definition* = hat portion of the chorionic wall in the region of its uterine attachment, which gives rise to chorionic villi; it consists of the mesoderm that lines the chorionic vesicle and, on the maternal side, of the trophoblast that lines the intervillous spaces; in the last half of gestation, the mesodermal connective tissue is largely replaced by fibrinoid material, and the amnionic membrane is adherent to the fetal side of the plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004560, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=69523 ] ## Synonyms @@ -13,7 +13,7 @@ * BTO:0002879 * EMAPA:31872 * SCTID:256391000 - * UMLS:C0230972 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chorionic_Plate] + * UMLS:C0230972 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chorionic_Plate ] * ncithesaurus:Chorionic_Plate ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004127.md b/md/UBERON/27/UBERON_0004127.md index 0cd33c65f1..cdb604374c 100644 --- a/md/UBERON/27/UBERON_0004127.md +++ b/md/UBERON/27/UBERON_0004127.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004127 * *Label* = compact layer of ventricle - * *Definition* = The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005062] + * *Definition* = The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005062 ] ## Synonyms * compact cardiac ventricle muscle - * ventricle myocardium compact zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010556] + * ventricle myocardium compact zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010556 ] * ventricular compact myocardium - * ventricular myocardial compact layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010556] - * ventricular myocardial compact zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010556] + * ventricular myocardial compact layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010556 ] + * ventricular myocardial compact zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010556 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardial compact layer](../../UBERON/25/UBERON_0004125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004227.md b/md/UBERON/27/UBERON_0004227.md index 1e39727bb9..9c5630dd5f 100644 --- a/md/UBERON/27/UBERON_0004227.md +++ b/md/UBERON/27/UBERON_0004227.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004227 * *Label* = kidney pelvis smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a renal pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a renal pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [renal pelvis](../../UBERON/24/UBERON_0001224.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004327.md b/md/UBERON/27/UBERON_0004327.md index 0e5d330abc..29ba67c642 100644 --- a/md/UBERON/27/UBERON_0004327.md +++ b/md/UBERON/27/UBERON_0004327.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004327 * *Label* = middle phalanx of pedal digit 5 - * *Definition* = A middle phalanx that is part of a pedal digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a pedal digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th toe intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th toe middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 5 intermediate phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 5 middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate phalanx of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle phalanx of the 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5th toe intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th toe middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 5 intermediate phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 5 middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate phalanx of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle phalanx of the 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004427.md b/md/UBERON/27/UBERON_0004427.md index 8f6deb8dc8..8f9f5a3130 100644 --- a/md/UBERON/27/UBERON_0004427.md +++ b/md/UBERON/27/UBERON_0004427.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004427 * *Label* = proximal epiphysis of first metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of first metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42963] - * proximal end of first metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42963] + * base of first metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42963 ] + * proximal end of first metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42963 ] * proximal epiphysis of metatarsal 1 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 1](../../UBERON/50/UBERON_0003650.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004527.md b/md/UBERON/27/UBERON_0004527.md index 269274cf0f..141d854961 100644 --- a/md/UBERON/27/UBERON_0004527.md +++ b/md/UBERON/27/UBERON_0004527.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004527 * *Label* = alveolar process of maxilla - * *Definition* = thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_process] + * *Definition* = thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_process ] ## Synonyms @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolar ridge](../../UBERON/03/UBERON_0004103.md) and [part_of](../../BFO/50/BFO_0000050.md) some [maxilla](../../UBERON/97/UBERON_0002397.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0001696 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004627.md b/md/UBERON/27/UBERON_0004627.md index 143ee75587..01163b6b50 100644 --- a/md/UBERON/27/UBERON_0004627.md +++ b/md/UBERON/27/UBERON_0004627.md @@ -7,9 +7,9 @@ ## Synonyms - * Second dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9187] - * T2 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9187] - * second thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9187] + * Second dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9187 ] + * T2 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9187 ] + * second thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9187 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9187 * MA:0001439 * SCTID:181829006 - * UMLS:C0459936 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T2_Vertebra] + * UMLS:C0459936 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T2_Vertebra ] * ncithesaurus:T2_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004727.md b/md/UBERON/27/UBERON_0004727.md index 77accaa362..04690e4c49 100644 --- a/md/UBERON/27/UBERON_0004727.md +++ b/md/UBERON/27/UBERON_0004727.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004727 * *Label* = cochlear nerve - * *Definition* = a nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:Wikipedia:Cochlear_nerve] + * *Definition* = a nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:Wikipedia:Cochlear_nerve ] ## Synonyms - * auditory nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53431] - * cochlear root of acoustic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53431] - * cochlear root of eighth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53431] - * vestibulocochlear VIII nerve cochlear component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001110] + * auditory nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53431 ] + * cochlear root of acoustic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53431 ] + * cochlear root of eighth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53431 ] + * vestibulocochlear VIII nerve cochlear component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001110 ] * cochlear component - * nervus vestibulocochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003490] + * nervus vestibulocochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003490 ] ## Cross-references @@ -28,7 +28,7 @@ * NeuroNames:1406 * OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA * SCTID:280286001 - * UMLS:C0009201 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cochlear_Nerve] + * UMLS:C0009201 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cochlear_Nerve ] * VHOG:0001182 * Wikipedia:Cochlear_nerve * ncithesaurus:Cochlear_Nerve @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004827.md b/md/UBERON/27/UBERON_0004827.md index ef96fd3343..b4d05825a5 100644 --- a/md/UBERON/27/UBERON_0004827.md +++ b/md/UBERON/27/UBERON_0004827.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004827 * *Label* = thyroid gland medulla - * *Definition* = A medulla that is part of a thyroid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medulla that is part of a thyroid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medulla of thyroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla of thyroid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla of thyroid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla of thyroid gland follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thyroid follicle medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thyroid gland follicle medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thyroid medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * medulla of thyroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla of thyroid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla of thyroid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla of thyroid gland follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thyroid follicle medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thyroid gland follicle medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thyroid medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thyroid gland](../../UBERON/46/UBERON_0002046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0004927.md b/md/UBERON/27/UBERON_0004927.md index e9dd7c3f22..7ef559ffba 100644 --- a/md/UBERON/27/UBERON_0004927.md +++ b/md/UBERON/27/UBERON_0004927.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004927 * *Label* = submucosa of cecum - * *Definition* = A submucosa that is part of a cecum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a cecum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * caecum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cecum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinum crassum caecum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of intestinum crassum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * caecum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cecum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinum crassum caecum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of intestinum crassum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005027.md b/md/UBERON/27/UBERON_0005027.md index aeca92f693..3352e40296 100644 --- a/md/UBERON/27/UBERON_0005027.md +++ b/md/UBERON/27/UBERON_0005027.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005027 * *Label* = mucosa of frontal sinus - * *Definition* = A mucosa that is part of a frontal sinus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a frontal sinus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * frontal sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * frontal sinus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * frontal sinus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * frontal sinus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of frontal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of frontal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of frontal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * frontal sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * frontal sinus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * frontal sinus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * frontal sinus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of frontal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of frontal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of frontal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [frontal sinus](../../UBERON/60/UBERON_0001760.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005127.md b/md/UBERON/27/UBERON_0005127.md index f333b453c2..425e9a8f12 100644 --- a/md/UBERON/27/UBERON_0005127.md +++ b/md/UBERON/27/UBERON_0005127.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005127 * *Label* = metanephric thick ascending limb - * *Definition* = At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072233] + * *Definition* = At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072233 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [thick ascending limb of loop of Henle](../../UBERON/91/UBERON_0001291.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005227.md b/md/UBERON/27/UBERON_0005227.md index ec03971ed0..8a5c5a3bdc 100644 --- a/md/UBERON/27/UBERON_0005227.md +++ b/md/UBERON/27/UBERON_0005227.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005227 * *Label* = manual digit epithelium - * *Definition* = An epithelium that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * finger epithelium - * fore limb digit epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005327.md b/md/UBERON/27/UBERON_0005327.md index 2965a04d10..866cbd73e9 100644 --- a/md/UBERON/27/UBERON_0005327.md +++ b/md/UBERON/27/UBERON_0005327.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005327 * *Label* = mesonephric glomerular epithelium - * *Definition* = A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061232] + * *Definition* = A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061232 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular epithelium](../../UBERON/88/UBERON_0004188.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005427.md b/md/UBERON/27/UBERON_0005427.md index cbba8ad982..6151065f52 100644 --- a/md/UBERON/27/UBERON_0005427.md +++ b/md/UBERON/27/UBERON_0005427.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005427 * *Label* = corneal primordium - * *Definition* = Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-061010-3] + * *Definition* = Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-061010-3 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005527.md b/md/UBERON/27/UBERON_0005527.md index d4817be119..dd7ad40dd4 100644 --- a/md/UBERON/27/UBERON_0005527.md +++ b/md/UBERON/27/UBERON_0005527.md @@ -6,7 +6,7 @@ ## Synonyms - * r8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000153] + * r8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000153 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 8 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0005727.md b/md/UBERON/27/UBERON_0005727.md index 424b3cefa4..97b41ce1fc 100644 --- a/md/UBERON/27/UBERON_0005727.md +++ b/md/UBERON/27/UBERON_0005727.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005727 * *Label* = obsolete somitomere - * *Definition* = Obsoleted definition: In the developing vertebrate embryo, the somitomeres are loose masses of paraxial mesoderm derived cells that form along each side of the neural tube towards the end of the third gestational week. The approximately 50 pairs of somitomeres begin developing in the cranial (head) region, continuing in a caudal (tail) direction until the end of week four[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Somitomere] + * *Definition* = Obsoleted definition: In the developing vertebrate embryo, the somitomeres are loose masses of paraxial mesoderm derived cells that form along each side of the neural tube towards the end of the third gestational week. The approximately 50 pairs of somitomeres begin developing in the cranial (head) region, continuing in a caudal (tail) direction until the end of week four[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Somitomere ] * *Comment* = Around the same time that experimental embryology in avian systems was most productive in the context of vertebrate head development, researchers examining embryonic head morphology with the scanning electron microscope introduced the idea of cephalic 'somitomeres'. By removing the surface ectoderm from the head, they reported that the paraxial mesoderm was organized into pseudosegmental units resembling incompletely differentiated somites, which they called somitomeres (Meier 1979; Jacobson 1988, 1993; Jacobson and Meier 1984). Since then, however, there has been no clear evidence for somitomeres. It remains unclear how they relate to the epithelial cysts in the head mesoderm - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2895339/] ## Synonyms - * somatomere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Somitomere] + * somatomere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Somitomere ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005727 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_0006127.md b/md/UBERON/27/UBERON_0006127.md index e6fbdfb691..9e285c40dd 100644 --- a/md/UBERON/27/UBERON_0006127.md +++ b/md/UBERON/27/UBERON_0006127.md @@ -6,8 +6,8 @@ ## Synonyms - * spinal cord funiculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77460] - * white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77460] + * spinal cord funiculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77460 ] + * white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77460 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0006227.md b/md/UBERON/27/UBERON_0006227.md index 332ce28a60..10c11f074e 100644 --- a/md/UBERON/27/UBERON_0006227.md +++ b/md/UBERON/27/UBERON_0006227.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0006327.md b/md/UBERON/27/UBERON_0006327.md index 314370da96..b6f4f5f20c 100644 --- a/md/UBERON/27/UBERON_0006327.md +++ b/md/UBERON/27/UBERON_0006327.md @@ -6,7 +6,7 @@ ## Synonyms - * extrinsic muscle of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55225] + * extrinsic muscle of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55225 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0006727.md b/md/UBERON/27/UBERON_0006727.md index 91a2a4e37f..e2f6de9af6 100644 --- a/md/UBERON/27/UBERON_0006727.md +++ b/md/UBERON/27/UBERON_0006727.md @@ -6,9 +6,9 @@ ## Synonyms - * lateral segment of left lobe of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14501] - * lateral segment of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14501] - * segmentum laterale (lobus hepatis sinister) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14501] + * lateral segment of left lobe of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14501 ] + * lateral segment of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14501 ] + * segmentum laterale (lobus hepatis sinister) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14501 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0007127.md b/md/UBERON/27/UBERON_0007127.md index df5f0bf222..ca03e17c99 100644 --- a/md/UBERON/27/UBERON_0007127.md +++ b/md/UBERON/27/UBERON_0007127.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007127 * *Label* = pharyngeal pouch 6 - * *Definition* = A pharyngeal pouch between pharyngeal arches 6 and 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A pharyngeal pouch between pharyngeal arches 6 and 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = pouches 5 and 6 are hard to distinguish. Development notes: Along with the fourth pouch, contributes to the formation of the musculature and cartilage of the larynx[WP]. ## Synonyms * 6th arch branchial pouch * 6th branchial pouch - * pharyngeal pouches 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001132[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sixth visceral pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000265] - * visceral pouch 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000265] + * pharyngeal pouches 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001132, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sixth visceral pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000265 ] + * visceral pouch 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000265 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Sixth of the pharyngeal (endodermal) evaginations between the visceral arches.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0007227.md b/md/UBERON/27/UBERON_0007227.md index 3ee81aee8d..33fd246f79 100644 --- a/md/UBERON/27/UBERON_0007227.md +++ b/md/UBERON/27/UBERON_0007227.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007227 * *Label* = superior vestibular nucleus - * *Definition* = The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vestibular_nucleus] + * *Definition* = The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vestibular_nucleus ] ## Synonyms - * nucleus of Bechterew [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54617] - * Bechterew's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vestibular_nucleus] - * Bekhterevs nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004372] - * nucleus vestibularis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vestibular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus of Bechterew [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54617 ] + * Bechterew's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vestibular_nucleus ] + * Bekhterevs nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004372 ] + * nucleus vestibularis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vestibular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * EV:0100257 * FMA:54617 * NeuroNames:715 - * UMLS:C0228757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Vestibular_Nucleus] + * UMLS:C0228757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Vestibular_Nucleus ] * Wikipedia:Superior_vestibular_nucleus * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png * ncithesaurus:Superior_Vestibular_Nucleus @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0007627.md b/md/UBERON/27/UBERON_0007627.md index d6b4ee2bd8..8629a371de 100644 --- a/md/UBERON/27/UBERON_0007627.md +++ b/md/UBERON/27/UBERON_0007627.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007627 * *Label* = magnocellular nucleus of stria terminalis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3220] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3220 ] * *Comment* = the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682] ## Synonyms - * magnocellular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000928] - * anterior mamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MA] + * magnocellular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000928 ] + * anterior mamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MA ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0007727.md b/md/UBERON/27/UBERON_0007727.md index badbd543f4..ecf5dbdcc9 100644 --- a/md/UBERON/27/UBERON_0007727.md +++ b/md/UBERON/27/UBERON_0007727.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007727 * *Label* = interphalangeal joint of pedal digit 4 - * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35362] - * interphalangeal joint of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35362[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35362 ] + * interphalangeal joint of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35362, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of pes](../../UBERON/21/UBERON_0007721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0007827.md b/md/UBERON/27/UBERON_0007827.md index e33c17c60a..1aa15e9082 100644 --- a/md/UBERON/27/UBERON_0007827.md +++ b/md/UBERON/27/UBERON_0007827.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007827 * *Label* = external nose - * *Definition* = Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59515] + * *Definition* = Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59515 ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:59515 * SCTID:265785009 - * UMLS:C0458561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Nose] + * UMLS:C0458561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Nose ] * ncithesaurus:External_Nose ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0008427.md b/md/UBERON/27/UBERON_0008427.md index 9d9cc9df2e..833412a563 100644 --- a/md/UBERON/27/UBERON_0008427.md +++ b/md/UBERON/27/UBERON_0008427.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008427 * *Label* = transverse foramen of axis - * *Definition* = A transverse foramen that is part of a vertebral bone 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A transverse foramen that is part of a vertebral bone 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foramen transversarium of axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23999] + * foramen transversarium of axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23999 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 2](../../UBERON/93/UBERON_0001093.md) and [transverse foramen](../../UBERON/30/UBERON_0000130.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0008827.md b/md/UBERON/27/UBERON_0008827.md index bd90a4dfe5..0c1934562f 100644 --- a/md/UBERON/27/UBERON_0008827.md +++ b/md/UBERON/27/UBERON_0008827.md @@ -12,7 +12,7 @@ ## Cross-references * MA:0001606 - * UMLS:C0033745 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Forestomach] + * UMLS:C0033745 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Forestomach ] * ncithesaurus:Forestomach ## Subsets @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Non-glandular portion of the stomach of some mammals that is connected to the esophagus. It is utilized as a holding chamber during digestion for un-digested and partially digested food. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mouse stomach contains two well-defined areas, a (nonglandular) forestomach and a glandular stomach, which are separated by the limiting ridge (margo plicatus)[http://ctrgenpath.net/static/atlas/mousehistology/Windows/digestive/forestomach.html]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0008927.md b/md/UBERON/27/UBERON_0008927.md index 36ee5ad081..ac26d41c04 100644 --- a/md/UBERON/27/UBERON_0008927.md +++ b/md/UBERON/27/UBERON_0008927.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008927 * *Label* = sublaminar layers S1 or S2 - * *Definition* = One of sublaminar layers S1 or S2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = One of sublaminar layers S1 or S2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md)or[sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0009027.md b/md/UBERON/27/UBERON_0009027.md index 53f0ecd500..586723b3dd 100644 --- a/md/UBERON/27/UBERON_0009027.md +++ b/md/UBERON/27/UBERON_0009027.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009027 * *Label* = vesical artery - * *Definition* = An artery that supplies blood to the urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An artery that supplies blood to the urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * arteria vesicali [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesical arteries [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * arteria vesicali [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesical arteries [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0009127.md b/md/UBERON/27/UBERON_0009127.md index 014481406a..f460948552 100644 --- a/md/UBERON/27/UBERON_0009127.md +++ b/md/UBERON/27/UBERON_0009127.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009127 * *Label* = epibranchial ganglion - * *Definition* = Cranial ganglion which develops from an epibranchial placode. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:20133851[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial ganglion which develops from an epibranchial placode. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:20133851, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Epibranchial ganglia orchestrate the development of the cranial neurogenic crest ## Synonyms - * epibranchial ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001555[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * epibranchial ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001555, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cranial ganglion](../../UBERON/14/UBERON_0001714.md) and [develops from](../../RO/02/RO_0002202.md) some [epibranchial placode](../../UBERON/78/UBERON_0003078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010027.md b/md/UBERON/27/UBERON_0010027.md index c2b3d42d48..942d5ad286 100644 --- a/md/UBERON/27/UBERON_0010027.md +++ b/md/UBERON/27/UBERON_0010027.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010127.md b/md/UBERON/27/UBERON_0010127.md index 6061732591..ca0c705c9b 100644 --- a/md/UBERON/27/UBERON_0010127.md +++ b/md/UBERON/27/UBERON_0010127.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010127 * *Label* = future dorsal motor nucleus of vagus - * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010227.md b/md/UBERON/27/UBERON_0010227.md index 2d568295f5..1a61a547fe 100644 --- a/md/UBERON/27/UBERON_0010227.md +++ b/md/UBERON/27/UBERON_0010227.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010227 * *Label* = future cardiac atrium - * *Definition* = Multi-tissue structure that is part of the heart tube and will become the cardiac atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001718] + * *Definition* = Multi-tissue structure that is part of the heart tube and will become the cardiac atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001718 ] ## Synonyms - * presumptive atrium heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001718] - * primordial atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71005] - * primordial cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71005] + * presumptive atrium heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001718 ] + * primordial atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71005 ] + * primordial cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71005 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010327.md b/md/UBERON/27/UBERON_0010327.md index ac7e53516e..65416a05d6 100644 --- a/md/UBERON/27/UBERON_0010327.md +++ b/md/UBERON/27/UBERON_0010327.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010327 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_0010427.md b/md/UBERON/27/UBERON_0010427.md index 76a406b579..7990b24332 100644 --- a/md/UBERON/27/UBERON_0010427.md +++ b/md/UBERON/27/UBERON_0010427.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010427 * *Label* = ciliary processes - * *Definition* = The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_processes] + * *Definition* = The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_processes ] ## Synonyms - * ciliary processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76551] - * ciliary processes set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76551] - * processus ciliares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of ciliary processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76551] - * ciliary process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_processes] - * processus ciliares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_processes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ciliary processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76551 ] + * ciliary processes set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76551 ] + * processus ciliares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of ciliary processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76551 ] + * ciliary process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_processes ] + * processus ciliares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_processes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010527.md b/md/UBERON/27/UBERON_0010527.md index b83528df5f..9ba7b3f612 100644 --- a/md/UBERON/27/UBERON_0010527.md +++ b/md/UBERON/27/UBERON_0010527.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010527 * *Label* = cavity of bone organ - * *Definition* = An organ cavity that surrounded_by a bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ cavity that surrounded_by a bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone organ cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24021] + * bone organ cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24021 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ cavity](../../UBERON/58/UBERON_0002558.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010727.md b/md/UBERON/27/UBERON_0010727.md index 06127e517e..fed6d41ec2 100644 --- a/md/UBERON/27/UBERON_0010727.md +++ b/md/UBERON/27/UBERON_0010727.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010727 * *Label* = sutural bone - * *Definition* = A piece of bone that is located within a suture in the cranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wormian_bones] + * *Definition* = A piece of bone that is located within a suture in the cranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wormian_bones ] ## Synonyms - * Wormian bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59327] + * Wormian bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59327 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0010927.md b/md/UBERON/27/UBERON_0010927.md index 4606b38631..ecd04c5153 100644 --- a/md/UBERON/27/UBERON_0010927.md +++ b/md/UBERON/27/UBERON_0010927.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010927 * *Label* = thyroepiglotticus muscle - * *Definition* = fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroepiglottic_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle] + * *Definition* = fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroepiglottic_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle ] * *Comment* = AO notes: not a distinct muscle in FMA ## Synonyms - * pars thyroepiglottica (musculus thyroarytenoideus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46594] - * pars thyroepiglottica musculus thyroarytenoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thyro-epiglottic part of thyro-arytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46594] + * pars thyroepiglottica (musculus thyroarytenoideus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46594 ] + * pars thyroepiglottica musculus thyroarytenoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thyro-epiglottic part of thyro-arytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46594 ] * thyroepiglottic - * thyroepiglottic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46594] - * thyroepiglotticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46594] + * thyroepiglottic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46594 ] + * thyroepiglotticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46594 ] * thyroepiglottus * thyroepiglottus muscle - * pars thyroepiglottica musculi thyroarytenoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroepiglottic_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars thyroepiglottica musculi thyroarytenoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroepiglottic_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46594 * SCTID:244819001 - * UMLS:C0224182 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroepiglottic_Muscle] + * UMLS:C0224182 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroepiglottic_Muscle ] * Wikipedia:Thyroepiglottic_muscle * http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png * ncithesaurus:Thyroepiglottic_Muscle @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Thexton, see notes from WG2.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0011327.md b/md/UBERON/27/UBERON_0011327.md index 16e62af3bb..51af860b32 100644 --- a/md/UBERON/27/UBERON_0011327.md +++ b/md/UBERON/27/UBERON_0011327.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011327 * *Label* = deep temporal nerve - * *Definition* = The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_temporal_nerves] + * *Definition* = The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_temporal_nerves ] ## Synonyms - * nervi temporales profundi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * deep temporal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_temporal_nerves] + * nervi temporales profundi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * deep temporal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_temporal_nerves ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0011627.md b/md/UBERON/27/UBERON_0011627.md index 694c3589bd..e07890048d 100644 --- a/md/UBERON/27/UBERON_0011627.md +++ b/md/UBERON/27/UBERON_0011627.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011627 * *Label* = orbital part of frontal bone - * *Definition* = The orbital or horizontal part of the frontal bone (pars orbitalis) consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_part_of_frontal_bone] + * *Definition* = The orbital or horizontal part of the frontal bone (pars orbitalis) consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_part_of_frontal_bone ] ## Synonyms - * pars orbitalis (os frontale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52849] - * pars orbitalis ossis frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_part_of_frontal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_part_of_frontal_bone] + * pars orbitalis (os frontale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52849 ] + * pars orbitalis ossis frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_part_of_frontal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_part_of_frontal_bone ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0011827.md b/md/UBERON/27/UBERON_0011827.md index 07677a9102..f5b800fae8 100644 --- a/md/UBERON/27/UBERON_0011827.md +++ b/md/UBERON/27/UBERON_0011827.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011827 * *Label* = areolar gland - * *Definition* = A sebaceous glands in the areola surrounding the nipple. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Areolar_glands] + * *Definition* = A sebaceous glands in the areola surrounding the nipple. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Areolar_glands ] * *Comment* = See https://sourceforge.net/tracker/?func=detail&aid=3612698&group_id=76834&atid=1205376 ## Synonyms * Montgomery's gland - * accessory gland of Montgomery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58090] - * accessory gland of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58090] + * accessory gland of Montgomery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58090 ] + * accessory gland of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58090 ] * gland of Montgomery - * mammary gland sebaceous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000794] + * mammary gland sebaceous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000794 ] ## Cross-references * FMA:58090 * MA:0000794 * SCTID:279034002 - * UMLS:C0929386 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Montgomery_s_Tubercle] + * UMLS:C0929386 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Montgomery_s_Tubercle ] * Wikipedia:Areolar_glands * ncithesaurus:Montgomery_s_Tubercle @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [areola](../../UBERON/32/UBERON_0002032.md) and [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lobular organ the parenchyma of which consists of acini connected to the surface of the areola or to a lactiferous duct by the duct of areolar gland. Examples: There are variable numbers of areolar glands[FMA:58090]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011827 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0011927.md b/md/UBERON/27/UBERON_0011927.md index e6baa223e1..65277739e6 100644 --- a/md/UBERON/27/UBERON_0011927.md +++ b/md/UBERON/27/UBERON_0011927.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011927 * *Label* = preganglionic sympathetic fiber - * *Definition* = A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008310] + * *Definition* = A cholinergic axonal fiber projecting from the CNS to a sympathetic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008310 ] ## Synonyms - * sympathetic preganglionic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008310] + * sympathetic preganglionic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008310 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sympathetic nervous system](../../UBERON/13/UBERON_0000013.md) and [preganglionic autonomic fiber](../../UBERON/25/UBERON_0011925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011927 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0012127.md b/md/UBERON/27/UBERON_0012127.md index ab1e61cc27..2a597de10a 100644 --- a/md/UBERON/27/UBERON_0012127.md +++ b/md/UBERON/27/UBERON_0012127.md @@ -8,8 +8,8 @@ ## Synonyms * feather hooklet - * barbicel [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hooklet [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * barbicel [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hooklet [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0012327.md b/md/UBERON/27/UBERON_0012327.md index ba378e99f7..f67a352ef3 100644 --- a/md/UBERON/27/UBERON_0012327.md +++ b/md/UBERON/27/UBERON_0012327.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012327 * *Label* = pearly penile papule - * *Definition* = small saliences on the ridge of the glans of the male genital organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hirsuties_coronae_glandis] + * *Definition* = small saliences on the ridge of the glans of the male genital organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hirsuties_coronae_glandis ] ## Synonyms - * hirsuties coronae glandis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hirsuties_coronae_glandis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * hirsutoid papilloma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hirsuties_coronae_glandis] - * preputial gland of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19653[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * hirsuties coronae glandis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hirsuties_coronae_glandis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * hirsutoid papilloma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hirsuties_coronae_glandis ] + * preputial gland of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19653, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9606 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012327 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0012427.md b/md/UBERON/27/UBERON_0012427.md index 71fb6d085a..785c7be7e5 100644 --- a/md/UBERON/27/UBERON_0012427.md +++ b/md/UBERON/27/UBERON_0012427.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [brush border layer](../../UBERON/24/UBERON_0012424.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013127.md b/md/UBERON/27/UBERON_0013127.md index 1b8e1cb6ad..b603c65819 100644 --- a/md/UBERON/27/UBERON_0013127.md +++ b/md/UBERON/27/UBERON_0013127.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013127 * *Label* = pulmonary venous system - * *Definition* = The part of the venous system that drains the lungs[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_venous_system] + * *Definition* = The part of the venous system that drains the lungs[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_venous_system ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pulmonary circulation is the half portion of the cardiovascular system which carries oxygen-depleted blood away from the heart, to the lungs, and returns oxygenated (oxygen-rich) blood back to the heart. The term pulmonary circulation is readily paired and contrasted with the systemic circulation. A separate system known as the bronchial circulation supplies blood to the tissue of the larger airways of the lung. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013127 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013227.md b/md/UBERON/27/UBERON_0013227.md index 8b7c56df8f..5e0bbe79da 100644 --- a/md/UBERON/27/UBERON_0013227.md +++ b/md/UBERON/27/UBERON_0013227.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013227 * *Label* = crypt of Henle - * *Definition* = Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eyes surface[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crypts_of_Henle] + * *Definition* = Crypts of Henle are microscopic pockets found in scattered sections of the conjunctiva around the eyeball. They are responsible for secreting mucin, a proteinous substance that makes up the inner layer of tears. It coats the cornea to provide a hydrophilic layer that allows for even distribution of the tear film. The layer of mucin allows tears to glide evenly across the eyes surface[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crypts_of_Henle ] ## Synonyms - * Henle's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crypts_of_Henle] - * crypts of Henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crypts_of_Henle] + * Henle's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crypts_of_Henle ] + * crypts of Henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crypts_of_Henle ] * gland of Henle ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013227 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013427.md b/md/UBERON/27/UBERON_0013427.md index 1fce389c44..fe63a29c9c 100644 --- a/md/UBERON/27/UBERON_0013427.md +++ b/md/UBERON/27/UBERON_0013427.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013427 * *Label* = occipital bun - * *Definition* = a prominent bulge, or projection, of the occipital bone at the back of the skull[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_bun] + * *Definition* = a prominent bulge, or projection, of the occipital bone at the back of the skull[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_bun ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = Occipital buns are important in scientific descriptions of classic Neanderthal crania. While common among many of mankind's ancestors, primarily robust relatives rather than gracile, the protrusion is relatively rare in modern Homo sapiens.. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013427 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013527.md b/md/UBERON/27/UBERON_0013527.md index 10871c1ed6..4fd1064131 100644 --- a/md/UBERON/27/UBERON_0013527.md +++ b/md/UBERON/27/UBERON_0013527.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013627.md b/md/UBERON/27/UBERON_0013627.md index 3ff40377cb..2425722076 100644 --- a/md/UBERON/27/UBERON_0013627.md +++ b/md/UBERON/27/UBERON_0013627.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013627 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0013727.md b/md/UBERON/27/UBERON_0013727.md index 753225ba20..cc20660f94 100644 --- a/md/UBERON/27/UBERON_0013727.md +++ b/md/UBERON/27/UBERON_0013727.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013727 * *Label* = notochordal fluid - * *Definition* = Fluid contained within the notochordal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Fluid contained within the notochordal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [notochordal canal](../../UBERON/04/UBERON_0013704.md) and [transudate](../../UBERON/79/UBERON_0007779.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0014527.md b/md/UBERON/27/UBERON_0014527.md index 4ad4a86f59..dda35b8857 100644 --- a/md/UBERON/27/UBERON_0014527.md +++ b/md/UBERON/27/UBERON_0014527.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014527 * *Label* = posterior limb of internal capsule - * *Definition* = Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144258] + * *Definition* = Portion of internal capsule lying between the globus pallidus and the thalamus (Nolte, The Human Brain, 6th ed., 2009, pg 409, modified by MM) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144258 ] ## Synonyms - * posterior limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_limb_of_internal_capsule] - * posterior limb of the internal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:pic] + * posterior limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_limb_of_internal_capsule ] + * posterior limb of the internal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:pic ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014527 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0014727.md b/md/UBERON/27/UBERON_0014727.md index 03a430552e..b19015c280 100644 --- a/md/UBERON/27/UBERON_0014727.md +++ b/md/UBERON/27/UBERON_0014727.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014727 * *Label* = intercalated duct of salivary gland - * *Definition* = The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Intercalated_Duct_of_the_Salivary_Gland_System] + * *Definition* = The tiny tubules with a very thin epithelial layer in the salivary glands running from the salivary acini into the striated duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Intercalated_Duct_of_the_Salivary_Gland_System ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intercalated duct](../../UBERON/25/UBERON_0014725.md) and [part_of](../../BFO/50/BFO_0000050.md) some [salivary gland](../../UBERON/44/UBERON_0001044.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014727 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_0015027.md b/md/UBERON/27/UBERON_0015027.md index 65fddbc853..af6cfadced 100644 --- a/md/UBERON/27/UBERON_0015027.md +++ b/md/UBERON/27/UBERON_0015027.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015027 * *Label* = manual digit 3 phalanx endochondral element - * *Definition* = A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 3 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 3 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 3 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 3 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit 3 phalanx cartilage element](../../UBERON/77/UBERON_0010677.md)or[manual digit 3 phalanx pre-cartilage condensation](../../UBERON/77/UBERON_0010577.md)or[manual digit 3 phalanx](../../UBERON/37/UBERON_0003637.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015027 + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2000127.md b/md/UBERON/27/UBERON_2000127.md index c833bb7eb4..b7abfd9063 100644 --- a/md/UBERON/27/UBERON_2000127.md +++ b/md/UBERON/27/UBERON_2000127.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000127 * *Label* = antorbital - * *Definition* = Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The antorbital in some teleosts fuses with the lacrimal. The antorbital contains the end branch of the infraorbital canal or neuromasts for the infraorbital canal in basal teleosts such as elopiformes, some osteoglossomorphs and fossil basal teleosts. ## Synonyms - * adnasal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Goodrich_1930[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Regan_1923] - * lateral rostral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Jollie_1984] - * perorbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Bridge_1877] + * adnasal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Goodrich_1930, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Regan_1923 ] + * lateral rostral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Jollie_1984 ] + * perorbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Bridge_1877 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2000527.md b/md/UBERON/27/UBERON_2000527.md index d8107933fc..2c07a56929 100644 --- a/md/UBERON/27/UBERON_2000527.md +++ b/md/UBERON/27/UBERON_2000527.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000527 * *Label* = pharyngobranchial bone - * *Definition* = Endochondral bone of the branchial arches located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone of the branchial arches located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * infrapharyngobranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000527] - * pharyngobranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000527[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * infrapharyngobranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000527 ] + * pharyngobranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000527, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2000627.md b/md/UBERON/27/UBERON_2000627.md index 18f713d255..7d3b3ccc6d 100644 --- a/md/UBERON/27/UBERON_2000627.md +++ b/md/UBERON/27/UBERON_2000627.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000627 * *Label* = posterior ceratohyal - * *Definition* = Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Posterohyal is used in Rapp Py Daniel (1997). ## Synonyms - * caudal ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000627] - * epihyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000627] - * posterohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000627] - * proximal ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000627] + * caudal ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000627 ] + * epihyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000627 ] + * posterohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000627 ] + * proximal ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000627 ] ## Cross-references @@ -40,7 +40,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2000727.md b/md/UBERON/27/UBERON_2000727.md index 7b3bcc322a..fa29b99181 100644 --- a/md/UBERON/27/UBERON_2000727.md +++ b/md/UBERON/27/UBERON_2000727.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000727 * *Label* = somite 17 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 17 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2000827.md b/md/UBERON/27/UBERON_2000827.md index 3eaaffaed3..646b12eb66 100644 --- a/md/UBERON/27/UBERON_2000827.md +++ b/md/UBERON/27/UBERON_2000827.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000827[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000827, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_2000927.md b/md/UBERON/27/UBERON_2000927.md index e67201ee48..c8d1e95db6 100644 --- a/md/UBERON/27/UBERON_2000927.md +++ b/md/UBERON/27/UBERON_2000927.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000927 * *Label* = myotome somite 16 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2001427.md b/md/UBERON/27/UBERON_2001427.md index a5d4888f65..c91b199feb 100644 --- a/md/UBERON/27/UBERON_2001427.md +++ b/md/UBERON/27/UBERON_2001427.md @@ -6,7 +6,7 @@ ## Synonyms - * anterior nostril [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001427] + * anterior nostril [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001427 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2001527.md b/md/UBERON/27/UBERON_2001527.md index 53e2b43e85..1fd7688042 100644 --- a/md/UBERON/27/UBERON_2001527.md +++ b/md/UBERON/27/UBERON_2001527.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001527 * *Label* = epibranchial cartilage - * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2001727.md b/md/UBERON/27/UBERON_2001727.md index 848bf96acd..8308ec1c80 100644 --- a/md/UBERON/27/UBERON_2001727.md +++ b/md/UBERON/27/UBERON_2001727.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001727 * *Label* = caudal principal ray 15 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 14. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 14. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2001827.md b/md/UBERON/27/UBERON_2001827.md index c495cfa131..376ce9a54b 100644 --- a/md/UBERON/27/UBERON_2001827.md +++ b/md/UBERON/27/UBERON_2001827.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001827 * *Label* = premaxillary-maxillary ligament - * *Definition* = Ligament that connects the premaxilla to the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that connects the premaxilla to the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2001927.md b/md/UBERON/27/UBERON_2001927.md index 9856e1feff..c6573e81cb 100644 --- a/md/UBERON/27/UBERON_2001927.md +++ b/md/UBERON/27/UBERON_2001927.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001927 * *Label* = anterior myodome - * *Definition* = Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2002027.md b/md/UBERON/27/UBERON_2002027.md index b7c00b66c2..af2a74e828 100644 --- a/md/UBERON/27/UBERON_2002027.md +++ b/md/UBERON/27/UBERON_2002027.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002027 * *Label* = pectoral fin proximal radial bone 2 - * *Definition* = pectoral fin proximal radial 2 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 2 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * second pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002027] + * second pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002027 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin proximal radial element 2](../../UBERON/27/UBERON_2102027.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2002127.md b/md/UBERON/27/UBERON_2002127.md index 67edf919a2..abdccc85a9 100644 --- a/md/UBERON/27/UBERON_2002127.md +++ b/md/UBERON/27/UBERON_2002127.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002127 * *Label* = myorhabdoid bone - * *Definition* = Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: Patterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. ## Synonyms - * myorhabdoi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002127[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * myorhabdoi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002127, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ Patterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of tele * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2005027.md b/md/UBERON/27/UBERON_2005027.md index 8d5afd9402..0880f17a73 100644 --- a/md/UBERON/27/UBERON_2005027.md +++ b/md/UBERON/27/UBERON_2005027.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005027 * *Label* = posterior cerebral vein - * *Definition* = Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PCeV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005027] - * caudal cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005027] + * PCeV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005027 ] + * caudal cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005027 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2005227.md b/md/UBERON/27/UBERON_2005227.md index a20bb6c6b6..e0e76cb149 100644 --- a/md/UBERON/27/UBERON_2005227.md +++ b/md/UBERON/27/UBERON_2005227.md @@ -6,9 +6,9 @@ ## Synonyms - * immature neuromast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005227] - * proto neuromast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005227] - * proto-neuromast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005227] + * immature neuromast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005227 ] + * proto neuromast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005227 ] + * proto-neuromast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005227 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2005327.md b/md/UBERON/27/UBERON_2005327.md index c1ff042195..13876b922d 100644 --- a/md/UBERON/27/UBERON_2005327.md +++ b/md/UBERON/27/UBERON_2005327.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005327 * *Label* = obsolete vH ionocyte - * *Definition* = Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * HR cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005327] - * VH-MRC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005327] + * HR cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005327 ] + * VH-MRC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005327 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_2007027.md b/md/UBERON/27/UBERON_2007027.md index aacabcf9fb..b28c9bb28b 100644 --- a/md/UBERON/27/UBERON_2007027.md +++ b/md/UBERON/27/UBERON_2007027.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2102027.md b/md/UBERON/27/UBERON_2102027.md index a602e16d54..7f1be1bb2f 100644 --- a/md/UBERON/27/UBERON_2102027.md +++ b/md/UBERON/27/UBERON_2102027.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2102027 * *Label* = pectoral fin proximal radial element 2 - * *Definition* = Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral fin proximal radial element that is the second most anterior or dorsal pectoral fin radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * second pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002027] + * second pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002027 ] ## Cross-references @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_2202027.md b/md/UBERON/27/UBERON_2202027.md index a242cb3646..4f473ccce5 100644 --- a/md/UBERON/27/UBERON_2202027.md +++ b/md/UBERON/27/UBERON_2202027.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202027 * *Label* = pectoral fin proximal radial cartilage 2 - * *Definition* = pectoral fin proximal radial 2 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 2 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * second pectoral basal radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002027] + * second pectoral basal radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002027 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin proximal radial element 2](../../UBERON/27/UBERON_2102027.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3000527.md b/md/UBERON/27/UBERON_3000527.md index 47d72b85c6..47eca981ab 100644 --- a/md/UBERON/27/UBERON_3000527.md +++ b/md/UBERON/27/UBERON_3000527.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3000727.md b/md/UBERON/27/UBERON_3000727.md index 0b2af1a630..b771e65404 100644 --- a/md/UBERON/27/UBERON_3000727.md +++ b/md/UBERON/27/UBERON_3000727.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000727 * *Label* = haemal arch lamina - * *Definition* = Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002] + * *Definition* = Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3000827.md b/md/UBERON/27/UBERON_3000827.md index 2c9f5069bc..7073929202 100644 --- a/md/UBERON/27/UBERON_3000827.md +++ b/md/UBERON/27/UBERON_3000827.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000827 * *Label* = margo anterior of cleithrum - * *Definition* = Anterior margin of the anterior ramus of the cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior margin of the anterior ramus of the cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3010027.md b/md/UBERON/27/UBERON_3010027.md index 314f6966f3..02fb7247bb 100644 --- a/md/UBERON/27/UBERON_3010027.md +++ b/md/UBERON/27/UBERON_3010027.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010027 * *Label* = M. sartorius - * *Definition* = Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3010127.md b/md/UBERON/27/UBERON_3010127.md index 00c4f10159..b17d8cc7eb 100644 --- a/md/UBERON/27/UBERON_3010127.md +++ b/md/UBERON/27/UBERON_3010127.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3010227.md b/md/UBERON/27/UBERON_3010227.md index 5bf4b8f3aa..292f4176ee 100644 --- a/md/UBERON/27/UBERON_3010227.md +++ b/md/UBERON/27/UBERON_3010227.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_3010627.md b/md/UBERON/27/UBERON_3010627.md index ab387d0159..ee032a3fda 100644 --- a/md/UBERON/27/UBERON_3010627.md +++ b/md/UBERON/27/UBERON_3010627.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010627 * *Label* = obsolete leydig cells - * *Definition* = A type of mucus and/or fluid secreting cell in larvae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A type of mucus and/or fluid secreting cell in larvae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000178 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/27/UBERON_3010827.md b/md/UBERON/27/UBERON_3010827.md index bc683c6426..5d6eb52172 100644 --- a/md/UBERON/27/UBERON_3010827.md +++ b/md/UBERON/27/UBERON_3010827.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_4200027.md b/md/UBERON/27/UBERON_4200027.md index eca64eb7f7..c9bf386847 100644 --- a/md/UBERON/27/UBERON_4200027.md +++ b/md/UBERON/27/UBERON_4200027.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/27/UBERON_4200127.md b/md/UBERON/27/UBERON_4200127.md index 63cbeaaae2..51c18df09d 100644 --- a/md/UBERON/27/UBERON_4200127.md +++ b/md/UBERON/27/UBERON_4200127.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0000128.md b/md/UBERON/28/UBERON_0000128.md index 9352f485fa..1904ffab04 100644 --- a/md/UBERON/28/UBERON_0000128.md +++ b/md/UBERON/28/UBERON_0000128.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000128 * *Label* = olivary body - * *Definition* = prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body] + * *Definition* = prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body ] ## Synonyms * olive body - * oliva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002299] + * oliva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002299 ] * olive ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0000328.md b/md/UBERON/28/UBERON_0000328.md index 001c3018db..5c7494c0b2 100644 --- a/md/UBERON/28/UBERON_0000328.md +++ b/md/UBERON/28/UBERON_0000328.md @@ -7,7 +7,7 @@ ## Synonyms * wall of digestive tract - * wall of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45653] + * wall of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45653 ] * wall of alimentary tract ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0000428.md b/md/UBERON/28/UBERON_0000428.md index ab0da3faa3..2a548dc8d2 100644 --- a/md/UBERON/28/UBERON_0000428.md +++ b/md/UBERON/28/UBERON_0000428.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000428 * *Label* = prostate epithelium - * *Definition* = the prostate epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001168] + * *Definition* = the prostate epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001168 ] * *Comment* = TODO - check 2 FMA IDs ## Synonyms - * epithelial tissue of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of prostatic gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79643] - * prostate epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of prostatic gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79643 ] + * prostate epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * prostate gland epithelium - * prostatic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66812] + * prostatic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66812 ] * prostatic gland epithelium ## Cross-references @@ -26,7 +26,7 @@ * FMA:66812 * FMA:79643 * MA:0001737 - * UMLS:C1179826 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Epithelium] + * UMLS:C1179826 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Epithelium ] * ncithesaurus:Prostatic_Epithelium ## Subsets @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002452 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0000928.md b/md/UBERON/28/UBERON_0000928.md index ad8e35b02b..098882ef04 100644 --- a/md/UBERON/28/UBERON_0000928.md +++ b/md/UBERON/28/UBERON_0000928.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001028.md b/md/UBERON/28/UBERON_0001028.md index 32d8a0a024..d23b35954b 100644 --- a/md/UBERON/28/UBERON_0001028.md +++ b/md/UBERON/28/UBERON_0001028.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001028 * *Label* = diaphysis of radius - * *Definition* = A diaphysis that is part of a radius bone[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_radius] + * *Definition* = A diaphysis that is part of a radius bone[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_radius ] ## Synonyms - * body of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33782] - * corpus radii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33782] - * radial diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33782] - * shaft of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33782] - * radial shaft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_radius] - * shaft of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_radius] + * body of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33782 ] + * corpus radii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33782 ] + * radial diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33782 ] + * shaft of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33782 ] + * radial shaft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_radius ] + * shaft of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_radius ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body of the radius (or shaft of radius) is prismoid in form, narrower above than below, and slightly curved, so as to be convex lateralward. It presents three borders and three surfaces[Wikipedia:Body_of_radius]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001128.md b/md/UBERON/28/UBERON_0001128.md index c99cddead6..b59df0a27d 100644 --- a/md/UBERON/28/UBERON_0001128.md +++ b/md/UBERON/28/UBERON_0001128.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001128 * *Label* = sternocleidomastoid - * *Definition* = a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] + * *Definition* = a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] * *Comment* = Editor notes: TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone. ## Synonyms * sterno-mastoid - * sternocleidomastoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005125] + * sternocleidomastoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005125 ] * sternomastoid * sternomastoid muscle - * SCM [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * musculus sternocleidomastoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sterno-cleido-mastoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sterno-mastoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoid muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternocleidomastoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternomastoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * sternomastoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] - * supraclavicularis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocleidomastoid_muscle] + * SCM [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * musculus sternocleidomastoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sterno-cleido-mastoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sterno-mastoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoid muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternocleidomastoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternomastoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * sternomastoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] + * supraclavicularis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocleidomastoid_muscle ] ## Cross-references @@ -34,7 +34,7 @@ * MA:0002384 * OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA * SCTID:181741009 - * UMLS:C0224153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternocleidomastoid_Muscle] + * UMLS:C0224153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternocleidomastoid_Muscle ] * VHOG:0000853 * Wikipedia:Sternocleidomastoid_muscle * http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The sternomastoid and the three parts of the trapezius are branchiomeric muscles that have secondarily acquired an attachment to the pectoral girdle. They evolved from the fish cucullaris.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001228.md b/md/UBERON/28/UBERON_0001228.md index 57fd62d224..bc1254ac9c 100644 --- a/md/UBERON/28/UBERON_0001228.md +++ b/md/UBERON/28/UBERON_0001228.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001228 * *Label* = renal papilla - * *Definition* = In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_papilla] + * *Definition* = In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_papilla ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * kidney papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011303] + * kidney papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011303 ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002730 * MESH:A05.810.453.466 * SCTID:362214007 - * UMLS:C0022666 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Papilla] + * UMLS:C0022666 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Papilla ] * Wikipedia:Renal_papilla * galen:RenalPapilla * http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001328.md b/md/UBERON/28/UBERON_0001328.md index 541afec204..232c70f23a 100644 --- a/md/UBERON/28/UBERON_0001328.md +++ b/md/UBERON/28/UBERON_0001328.md @@ -17,7 +17,7 @@ * FMA:19570 * MA:0001738 * SCTID:279692004 - * UMLS:C0227970 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostate_Gland_Lobe] + * UMLS:C0227970 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostate_Gland_Lobe ] * ncithesaurus:Prostate_Gland_Lobe ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001428.md b/md/UBERON/28/UBERON_0001428.md index cc7856de2f..b712215f9c 100644 --- a/md/UBERON/28/UBERON_0001428.md +++ b/md/UBERON/28/UBERON_0001428.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001428 * *Label* = lunate - * *Definition* = The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lunate_bone] + * *Definition* = The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lunate_bone ] * *Comment* = Taxon notes: articulating with the ulnare and the radiale[VSAO}. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially ## Synonyms - * lunar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005040] + * lunar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005040 ] * lunate bone * os carpi intermedium - * os lunatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005040] + * os lunatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005040 ] * semilunar bone - * intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * intermediate carpal bone - * os lunatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lunate_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os lunatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lunate_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * semilunar * semilunate @@ -26,7 +26,7 @@ * MA:0002556 * MESH:A02.835.232.087.144.663 * SCTID:181959000 - * UMLS:C0036624 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lunate_Bone] + * UMLS:C0036624 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lunate_Bone ] * VSAO:0005040 * Wikipedia:Lunate_bone * galen:Lunate @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001528.md b/md/UBERON/28/UBERON_0001528.md index 398774b187..45939267b9 100644 --- a/md/UBERON/28/UBERON_0001528.md +++ b/md/UBERON/28/UBERON_0001528.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001528 * *Label* = radio-ulnar joint - * *Definition* = A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * articulation of the radus and ulna - * radioulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38863] + * radioulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38863 ] * radioulnar articulation ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) and [connects](../../ts/core#connects.md) some [ulna](../../UBERON/24/UBERON_0001424.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001628.md b/md/UBERON/28/UBERON_0001628.md index eebb8b9e55..0f63782764 100644 --- a/md/UBERON/28/UBERON_0001628.md +++ b/md/UBERON/28/UBERON_0001628.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001628 * *Label* = posterior communicating artery - * *Definition* = In human anatomy, the posterior communicating artery is one of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_communicating_artery] + * *Definition* = In human anatomy, the posterior communicating artery is one of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_communicating_artery ] * *Comment* = Taxon notes: todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery ## Synonyms - * caudal communicating segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005001] - * posterior communicating segment of the basilar artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005001] + * caudal communicating segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005001 ] + * posterior communicating segment of the basilar artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005001 ] * PCA * PCS - * arteria cerebri communicans posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_communicating_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria cerebri communicans posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_communicating_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * RETIRED_EHDAA2:0001487 * SCTID:181314001 * TAO:0005001 - * UMLS:C0149559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Communicating_Artery] + * UMLS:C0149559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Communicating_Artery ] * Wikipedia:Posterior_communicating_artery * ZFA:0005001 * http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg @@ -55,8 +55,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001728.md b/md/UBERON/28/UBERON_0001728.md index ca82d5585c..43b7678f49 100644 --- a/md/UBERON/28/UBERON_0001728.md +++ b/md/UBERON/28/UBERON_0001728.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001728 * *Label* = nasopharynx - * *Definition* = uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate; it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopharynx] + * *Definition* = uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate; it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopharynx ] * *Comment* = In humans: in front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane ## Synonyms * nasal part of pharynx * rhinopharynx - * Nasenrachenraum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000662] - * epipharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharynx] - * pars nasalis pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasopharynx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Nasenrachenraum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000662 ] + * epipharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharynx ] + * pars nasalis pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasopharynx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,7 +30,7 @@ * MESH:A03.867.557 * OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA * SCTID:181200003 - * UMLS:C0027442 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasopharynx] + * UMLS:C0027442 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasopharynx ] * VHOG:0000375 * Wikipedia:Nasopharynx * http://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The uppermost of the three regions of the throat (pharynx), situated behind the nasal cavity and extending from the posterior nares to the level above the soft palate. [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = nasopharyngeal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001828.md b/md/UBERON/28/UBERON_0001828.md index cdc45d6de6..384b3e067d 100644 --- a/md/UBERON/28/UBERON_0001828.md +++ b/md/UBERON/28/UBERON_0001828.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001828 * *Label* = gingiva - * *Definition* = The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0013002015[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gingiva] + * *Definition* = The fibrous investing tissue, covered by keratinized epithelium, that immediately surrounds a tooth and is contiguous with its periodontal ligament and with the mucosal tissues of the mouth[Glossary of Periodontal Terms 2001]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0013002015, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gingiva ] * *Comment* = Editor notes: FMA has a 3-level breakdown of jaws into: region, jaw (skeleton+gums), skeleton. ## Synonyms - * gum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59762] - * gum tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * gum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59762 ] + * gum tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * gums * gingival mucosa @@ -25,7 +25,7 @@ * MESH:A14.254.646.480 * OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA * SCTID:181224006 - * UMLS:C0017562 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gingiva] + * UMLS:C0017562 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gingiva ] * VHOG:0001269 * Wikipedia:Gingiva * galen:Gingiva @@ -57,8 +57,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gingival * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0001928.md b/md/UBERON/28/UBERON_0001928.md index eae20e1b7b..2b22c02b8d 100644 --- a/md/UBERON/28/UBERON_0001928.md +++ b/md/UBERON/28/UBERON_0001928.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001928 * *Label* = preoptic area - * *Definition* = Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preoptic_area[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preoptic_area, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * preoptic nuclei * preoptic region of hypothalamus - * POA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1706[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * POA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area hypothalamica rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001796] + * POA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1706, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * POA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area hypothalamica rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001796 ] * area praeoptica - * area preoptica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preoptic_area[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei preoptici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:377[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * preoptic hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001796] - * preoptic hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001796] + * area preoptica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preoptic_area, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei preoptici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:377, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * preoptic hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001796 ] + * preoptic hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001796 ] * preoptic region - * regio hypothalamica anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001796] + * regio hypothalamica anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001796 ] ## Cross-references @@ -32,11 +32,11 @@ * GAID:644 * MESH:A08.186.211.730.385.357.342.450 * NIF_GrossAnatomy:birnlex_1706 - * NeuroNames:377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1706] + * NeuroNames:377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1706 ] * SCTID:362382004 * TAO:0000470 - * UMLS:C0033063 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1706] - * UMLS:C1284641 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1706] + * UMLS:C0033063 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1706 ] + * UMLS:C1284641 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1706 ] * Wikipedia:Preoptic_area * ZFA:0000470 * http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG @@ -62,8 +62,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002028.md b/md/UBERON/28/UBERON_0002028.md index 5aea3cf28b..9e5bc6ccc4 100644 --- a/md/UBERON/28/UBERON_0002028.md +++ b/md/UBERON/28/UBERON_0002028.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002028 * *Label* = hindbrain - * *Definition* = The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhombencephalon[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000029[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhombencephalon, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000029, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps ## Synonyms @@ -28,11 +28,11 @@ * MESH:A08.186.211.132.810 * MIAA:0000107 * NIF_GrossAnatomy:birnlex_942 - * NeuroNames:540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_942] + * NeuroNames:540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_942 ] * TAO:0000029 - * UMLS:C0035507 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_942] - * UMLS:C0035507 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hind-Brain] - * UMLS:C1522180 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_942] + * UMLS:C0035507 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_942 ] + * UMLS:C0035507 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hind-Brain ] + * UMLS:C1522180 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_942 ] * VHOG:0000070 * Wikipedia:Rhombencephalon * XAO:0000015 @@ -52,7 +52,7 @@ * [regional part of brain](../../UBERON/16/UBERON_0002616.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [brainstem](../../UBERON/98/UBERON_0002298.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) * [develops from](../../RO/02/RO_0002202.md) some [presumptive hindbrain](../../UBERON/77/UBERON_0007277.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [rhombencephalon neural crest](../../UBERON/52/UBERON_0003852.md) @@ -71,8 +71,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = rhombencephalic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002128.md b/md/UBERON/28/UBERON_0002128.md index fecf2c1f6d..ec0fdf0af7 100644 --- a/md/UBERON/28/UBERON_0002128.md +++ b/md/UBERON/28/UBERON_0002128.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002128 * *Label* = superior olivary complex - * *Definition* = The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_olivary_complex] + * *Definition* = The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_olivary_complex ] * *Comment* = GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout ## Synonyms - * nucleus olivaris superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72247[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior olivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72247] - * superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72247] - * nucleus olivaris superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_olivary_complex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio olivaris superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:569[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior olivary nucleus (Barr & Kiernan) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:569] - * superior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72247] + * nucleus olivaris superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72247, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior olivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72247 ] + * superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72247 ] + * nucleus olivaris superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_olivary_complex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio olivaris superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:569, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior olivary nucleus (Barr & Kiernan) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:569 ] + * superior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72247 ] ## Cross-references @@ -24,8 +24,8 @@ * EV:0100263 * FMA:72247 * NIF_GrossAnatomy:birnlex_1307 - * NeuroNames:569 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1307] - * UMLS:C0175427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1307] + * NeuroNames:569 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1307 ] + * UMLS:C0175427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1307 ] * Wikipedia:Superior_olivary_complex * http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002228.md b/md/UBERON/28/UBERON_0002228.md index 561b80ce97..d6551c14ce 100644 --- a/md/UBERON/28/UBERON_0002228.md +++ b/md/UBERON/28/UBERON_0002228.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002228 * *Label* = rib - * *Definition* = An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rib[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rib, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as "true ribs", are directly attached to the sternum through the costal cartilage. The following five sets are known as "false ribs", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1] ## Synonyms * dorsal rib * pleural rib - * ribs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000538[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ribs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000538, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA * SCTID:302523002 * TAO:0000538 - * UMLS:C0035561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib] + * UMLS:C0035561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib ] * VHOG:0001154 * Wikipedia:Rib * ZFA:0000538 @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [rib endochondral element](../../UBERON/19/UBERON_0015019.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Endochondral, rodlike element that articulates with the transverse process and parapophysis (double-headed rib), or with the transverse process only (single-headed rib); it extends into the body wall and provides a site for muscle attachment.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = costal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002328.md b/md/UBERON/28/UBERON_0002328.md index 9413c2f991..c94028dbc3 100644 --- a/md/UBERON/28/UBERON_0002328.md +++ b/md/UBERON/28/UBERON_0002328.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002328 * *Label* = notochord - * *Definition* = a flexible rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the nucleus pulposus of the intervertebral disc. The notochord is found ventral to the neural tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Notochord[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/25[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/Chordata/2499] + * *Definition* = a flexible rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the nucleus pulposus of the intervertebral disc. The notochord is found ventral to the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Notochord, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/25, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/Chordata/2499 ] * *Comment* = Development notes: In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord. // The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB] ## Synonyms * embryonic notocord - * notocord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000135] - * notochorda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Notochord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * notocord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000135 ] + * notochorda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Notochord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A16.254.610 * SCTID:308820002 * TAO:0000135 - * UMLS:C0028439 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Notochord] + * UMLS:C0028439 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Notochord ] * VHOG:0000199 * VSAO:0000032 * Wikipedia:Notochord @@ -73,8 +73,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (3) a stiff, longitudinal rod of turgid cells along the dorsal part of the body that is called a notochord (...).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = notochordal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002428.md b/md/UBERON/28/UBERON_0002428.md index e259e4810d..324cbe489e 100644 --- a/md/UBERON/28/UBERON_0002428.md +++ b/md/UBERON/28/UBERON_0002428.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002428 * *Label* = limb bone - * *Definition* = A bone that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids ## Synonyms * bone of extremity - * bone of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * free limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * bone of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * free limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -18,7 +18,7 @@ * MAT:0000151 * MIAA:0000151 * SCTID:304149004 - * UMLS:C0582791 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_of_the_Extremity] + * UMLS:C0582791 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_of_the_Extremity ] * ncithesaurus:Bone_of_the_Extremity ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002528.md b/md/UBERON/28/UBERON_0002528.md index ba76726d42..8c3ed30b0d 100644 --- a/md/UBERON/28/UBERON_0002528.md +++ b/md/UBERON/28/UBERON_0002528.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002528 * *Label* = sacral lymph node - * *Definition* = A lymph node located in the sacral region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Sacral_Lymph_Node] + * *Definition* = A lymph node located in the sacral region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Sacral_Lymph_Node ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:16655 * MA:0002883 * SCTID:279797001 - * UMLS:C0229827 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacral_Lymph_Node] + * UMLS:C0229827 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacral_Lymph_Node ] * ncithesaurus:Sacral_Lymph_Node ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sacral region](../../UBERON/73/UBERON_0005473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002628.md b/md/UBERON/28/UBERON_0002628.md index 1b1e946499..fd4568ed12 100644 --- a/md/UBERON/28/UBERON_0002628.md +++ b/md/UBERON/28/UBERON_0002628.md @@ -6,10 +6,10 @@ ## Synonyms - * caudate nuclear tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61854] - * cauda (caudatus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:229[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cauda nuclei caudati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:229[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tail of the caudate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:229] + * caudate nuclear tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61854 ] + * cauda (caudatus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:229, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cauda nuclei caudati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:229, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tail of the caudate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:229 ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:18548 * FMA:61854 * NIF_GrossAnatomy:birnlex_1215 - * NeuroNames:229 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1215] + * NeuroNames:229 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1215 ] * SCTID:279299004 ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002728.md b/md/UBERON/28/UBERON_0002728.md index 2c5792369a..0c4742655a 100644 --- a/md/UBERON/28/UBERON_0002728.md +++ b/md/UBERON/28/UBERON_0002728.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002728 * *Label* = entorhinal area - * *Definition* = Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1508[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Entorhinal_cortex] + * *Definition* = Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1508, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Entorhinal_cortex ] * *Comment* = todo - check area vs complex. ABA:ENT this is part of the hippocampal formation via retrohippocampal region ## Synonyms - * Brodmann's area 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002650] - * area entorhinalis (28,34) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:168[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area entorhinalis ventralis et dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:168[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortex entorhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:168[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * entorhinal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1508[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * Brodmann's area 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002650 ] + * area entorhinalis (28,34) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:168, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area entorhinalis ventralis et dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:168, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortex entorhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:168, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * entorhinal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1508, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -26,10 +26,10 @@ * GAID:636 * MESH:A08.186.211.577.710.225 * NIF_GrossAnatomy:birnlex_1508 - * NeuroNames:168 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1508] + * NeuroNames:168 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1508 ] * SCTID:369099007 - * UMLS:C0175196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1508] - * UMLS:C0175196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Entorhinal_Cortex] + * UMLS:C0175196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1508 ] + * UMLS:C0175196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Entorhinal_Cortex ] * Wikipedia:Entorhinal_cortex * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png * ncithesaurus:Entorhinal_Cortex @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002828.md b/md/UBERON/28/UBERON_0002828.md index f503acf14b..9209ab2e83 100644 --- a/md/UBERON/28/UBERON_0002828.md +++ b/md/UBERON/28/UBERON_0002828.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002828 * *Label* = ventral cochlear nucleus - * *Definition* = The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_cochlear_nucleus] + * *Definition* = The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_cochlear_nucleus ] ## Synonyms - * anterior cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54621] - * c1281209 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2567] - * ventral cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54621] - * VCo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2567[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * accessory cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] - * nucleus acustici accessorici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cochlearis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cochlearis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral cochlear nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] - * ventral coclear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VCO] - * ventral division of cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] + * anterior cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54621 ] + * c1281209 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2567 ] + * ventral cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54621 ] + * VCo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2567, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * accessory cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] + * nucleus acustici accessorici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cochlearis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cochlearis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral cochlear nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] + * ventral coclear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VCO ] + * ventral division of cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] ## Cross-references @@ -27,9 +27,9 @@ * BM:CV * FMA:54621 * NIF_GrossAnatomy:birnlex_2567 - * NeuroNames:722 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2567] + * NeuroNames:722 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2567 ] * SCTID:280178008 - * UMLS:C0175500 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2567] + * UMLS:C0175500 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2567 ] * Wikipedia:Ventral_cochlear_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0002928.md b/md/UBERON/28/UBERON_0002928.md index 9ecd9ebc4f..70ea1e0cfe 100644 --- a/md/UBERON/28/UBERON_0002928.md +++ b/md/UBERON/28/UBERON_0002928.md @@ -6,7 +6,7 @@ ## Synonyms - * polymorph layer of the dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PoDG] + * polymorph layer of the dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PoDG ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003028.md b/md/UBERON/28/UBERON_0003028.md index 32a12d4f21..ffb769f13b 100644 --- a/md/UBERON/28/UBERON_0003028.md +++ b/md/UBERON/28/UBERON_0003028.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003028 * *Label* = commissure of inferior colliculus - * *Definition* = A commissure that is part of a inferior colliculus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A commissure that is part of a inferior colliculus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * caudal colliculus commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * commissure of caudal colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * commissure of inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71115] - * commissure of posterior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * commissure of posterior corpus quadrigeminum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior collicular commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71115] - * inferior colliculus commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71115] - * posterior colliculus commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior corpus quadrigeminum commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * commissura colliculi inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:481[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura colliculorum caudalium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:481[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura colliculorum inferiorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:481[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissure of the inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICG] - * commissure of the inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IGO] - * commissure of the inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cic] - * commissure of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:481] + * caudal colliculus commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * commissure of caudal colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * commissure of inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71115 ] + * commissure of posterior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * commissure of posterior corpus quadrigeminum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior collicular commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71115 ] + * inferior colliculus commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71115 ] + * posterior colliculus commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior corpus quadrigeminum commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * commissura colliculi inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:481, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura colliculorum caudalium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:481, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura colliculorum inferiorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:481, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissure of the inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICG ] + * commissure of the inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IGO ] + * commissure of the inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cic ] + * commissure of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:481 ] ## Cross-references @@ -31,9 +31,9 @@ * BAMS:cic * FMA:71115 * NIF_GrossAnatomy:birnlex_935 - * NeuroNames:481 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_935] + * NeuroNames:481 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_935 ] * SCTID:369260005 - * UMLS:C0152367 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_935] + * UMLS:C0152367 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_935 ] ## Subsets @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior colliculus](../../UBERON/46/UBERON_0001946.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003128.md b/md/UBERON/28/UBERON_0003128.md index 25f9ce8f5a..5c4eb8a28f 100644 --- a/md/UBERON/28/UBERON_0003128.md +++ b/md/UBERON/28/UBERON_0003128.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003128 * *Label* = cranium - * *Definition* = Upper portion of the skull that excludes the mandible (when present in the organism). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranium_(anatomy)] + * *Definition* = Upper portion of the skull that excludes the mandible (when present in the organism). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranium_(anatomy) ] * *Comment* = The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium ## Synonyms - * bones of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71325] - * ossa cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71325[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of bones of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71325] + * bones of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71325 ] + * ossa cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71325, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of bones of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71325 ] * skull minus mandible * upper part of skull - * calvarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001328] + * calvarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001328 ] * epicranial plate * skeletal system of head @@ -52,8 +52,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cranial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003228.md b/md/UBERON/28/UBERON_0003228.md index 01a420997e..2a35c813f2 100644 --- a/md/UBERON/28/UBERON_0003228.md +++ b/md/UBERON/28/UBERON_0003228.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003228 * *Label* = supinator muscle - * *Definition* = a muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supinator_muscle] + * *Definition* = a muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supinator_muscle ] * *Comment* = TODO: The term "supinator" can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term "supinator longus" was used to refer to the brachioradialis, and "supinator brevis" was used to the muscle now known as the supinator. ## Synonyms * supinator - * musculus supinator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supinator_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * supinator brevus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supinator_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] + * musculus supinator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supinator_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * supinator brevus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supinator_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003328.md b/md/UBERON/28/UBERON_0003328.md index 2185aaaec7..3c41e9153a 100644 --- a/md/UBERON/28/UBERON_0003328.md +++ b/md/UBERON/28/UBERON_0003328.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003328 * *Label* = mesenchyme of footplate - * *Definition* = Mesenchyme that is part of a footplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a footplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [footplate](../../UBERON/71/UBERON_0006871.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005260 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003428.md b/md/UBERON/28/UBERON_0003428.md index 585a437a74..68b93d3fbe 100644 --- a/md/UBERON/28/UBERON_0003428.md +++ b/md/UBERON/28/UBERON_0003428.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003428 * *Label* = gonadal fat pad - * *Definition* = the encapsulated adipose tissue associated with the ovaries or testes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005335] + * *Definition* = the encapsulated adipose tissue associated with the ovaries or testes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005335 ] * *Comment* = Editor notes: consider change relationship from part_of. AO notes: we place the amphibian structures here as their definitions state a gonadal association. ## Synonyms - * fat pad of gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat pad of gonads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fat pad of gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat pad of gonads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * gonad-associated fat pad * gonadal fat depot - * gonadal fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gonadal fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gonad](../../UBERON/91/UBERON_0000991.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure associated with the gonads which vary in form among amphibians but are primarily composed of adipose tissue and are thought to be a source of nutrients for the gonads.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003528.md b/md/UBERON/28/UBERON_0003528.md index 76e1bd41f6..17b4aad272 100644 --- a/md/UBERON/28/UBERON_0003528.md +++ b/md/UBERON/28/UBERON_0003528.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003528 * *Label* = brain grey matter - * *Definition* = A gray matter of neuraxis that is part of a brain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gray matter of neuraxis that is part of a brain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brain gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brain gray matter of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brain grey substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gray matter of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gray matter of neuraxis of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * grey matter of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * grey substance of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brain gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brain gray matter of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brain grey substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gray matter of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gray matter of neuraxis of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * grey matter of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * grey substance of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0000810 - * UMLS:C1707348 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Gray_Matter] + * UMLS:C1707348 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Gray_Matter ] * ncithesaurus:Cerebral_Gray_Matter ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003728.md b/md/UBERON/28/UBERON_0003728.md index 4de7b9a1bd..bb36559c7e 100644 --- a/md/UBERON/28/UBERON_0003728.md +++ b/md/UBERON/28/UBERON_0003728.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003728 * *Label* = mediastinum - * *Definition* = The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mediastinum] + * *Definition* = The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mediastinum ] ## Synonyms - * mediastinal part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9826] + * mediastinal part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9826 ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A01.911.800.500 * OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA * SCTID:181217005 - * UMLS:C0025066 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mediastinum] + * UMLS:C0025066 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mediastinum ] * Wikipedia:Mediastinum * http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png @@ -41,8 +41,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mediastinal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003828.md b/md/UBERON/28/UBERON_0003828.md index 58b136253f..e8136529a5 100644 --- a/md/UBERON/28/UBERON_0003828.md +++ b/md/UBERON/28/UBERON_0003828.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003828 * *Label* = abdominal segment bone - * *Definition* = A bone that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment of trunk bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdominal segment of trunk bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdominal segment of trunk bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdominal segment of trunk bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0003928.md b/md/UBERON/28/UBERON_0003928.md index e94f51a868..c355ba36d6 100644 --- a/md/UBERON/28/UBERON_0003928.md +++ b/md/UBERON/28/UBERON_0003928.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003928 * *Label* = digestive system duct - * *Definition* = A duct that is part of a digestive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a digestive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * duct of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * duct of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * duct of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * duct of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive system](../../UBERON/07/UBERON_0001007.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004128.md b/md/UBERON/28/UBERON_0004128.md index 24cb1ccd86..e5b22c92c5 100644 --- a/md/UBERON/28/UBERON_0004128.md +++ b/md/UBERON/28/UBERON_0004128.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004128 * *Label* = optic vesicle - * *Definition* = The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003404[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_vesicles] + * *Definition* = The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003404, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_vesicles ] * *Comment* = Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode PMID:16496288 ## Synonyms * evagination - * ocular vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000165] + * ocular vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000165 ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:16540 * SCTID:362864008 * TAO:0000050 - * UMLS:C0231106 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Vesicle] + * UMLS:C0231106 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Vesicle ] * VHOG:0000165 * Wikipedia:Optic_vesicles * XAO:0000228 @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004228.md b/md/UBERON/28/UBERON_0004228.md index a73f78d9b0..6ff4dd88d0 100644 --- a/md/UBERON/28/UBERON_0004228.md +++ b/md/UBERON/28/UBERON_0004228.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004228 * *Label* = urinary bladder smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001697] - * urinary bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001697 ] + * urinary bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004328.md b/md/UBERON/28/UBERON_0004328.md index 69b9e6e24b..98468a2a6c 100644 --- a/md/UBERON/28/UBERON_0004328.md +++ b/md/UBERON/28/UBERON_0004328.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004328 * *Label* = proximal phalanx of manual digit 2 - * *Definition* = A proximal phalanx that is part of a hand digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a hand digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd digit of hand proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2nd finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 2nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 2nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23919] - * proximal phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23919] - * proximal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second proximal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23919] + * 2nd digit of hand proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2nd finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 2nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 2nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23919 ] + * proximal phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23919 ] + * proximal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second proximal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23919 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004428.md b/md/UBERON/28/UBERON_0004428.md index 71ab780fb5..959b9d7635 100644 --- a/md/UBERON/28/UBERON_0004428.md +++ b/md/UBERON/28/UBERON_0004428.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004428 * *Label* = proximal epiphysis of second metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of second metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42964] - * proximal end of second metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42964] + * base of second metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42964 ] + * proximal end of second metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42964 ] * proximal epiphysis of metatarsal 2 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 2](../../UBERON/51/UBERON_0003651.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004528.md b/md/UBERON/28/UBERON_0004528.md index fd0b2cb53c..45162ed4ab 100644 --- a/md/UBERON/28/UBERON_0004528.md +++ b/md/UBERON/28/UBERON_0004528.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004528 * *Label* = alveolar ridge of mandible - * *Definition* = The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_part_of_mandible] + * *Definition* = The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_part_of_mandible ] ## Synonyms * alveolar margin of mandible * alveolar part of mandible - * alveolar process of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52832] + * alveolar process of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52832 ] * anterior alveolar ridge - * pars alveolaris (mandibula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52832] + * pars alveolaris (mandibula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52832 ] * upper alveolar ridge - * pars alveolaris mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_part_of_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars alveolaris mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_part_of_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolar ridge](../../UBERON/03/UBERON_0004103.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mandible](../../UBERON/84/UBERON_0001684.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004628.md b/md/UBERON/28/UBERON_0004628.md index 12b3946e53..20bc7a7517 100644 --- a/md/UBERON/28/UBERON_0004628.md +++ b/md/UBERON/28/UBERON_0004628.md @@ -7,9 +7,9 @@ ## Synonyms - * T3 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9209] - * Third dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9209] - * third thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9209] + * T3 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9209 ] + * Third dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9209 ] + * third thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9209 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9209 * MA:0001440 * SCTID:181830001 - * UMLS:C0459952 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T3_Vertebra] + * UMLS:C0459952 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T3_Vertebra ] * ncithesaurus:T3_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004728.md b/md/UBERON/28/UBERON_0004728.md index cacadca294..816d7e79b5 100644 --- a/md/UBERON/28/UBERON_0004728.md +++ b/md/UBERON/28/UBERON_0004728.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004728 * *Label* = amphibian larval stage - * *Definition* = Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002117] + * *Definition* = Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002117 ] * *Comment* = AO notes: the XAO class denotes a stage ## Synonyms * larva stage - * polliwog [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * polliwog stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * tadpole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * tadpole stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * larva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:1000008] + * polliwog [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * polliwog stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * tadpole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * tadpole stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * larva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:1000008 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0004928.md b/md/UBERON/28/UBERON_0004928.md index cda830d816..197f4bb5d6 100644 --- a/md/UBERON/28/UBERON_0004928.md +++ b/md/UBERON/28/UBERON_0004928.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004928 * *Label* = submucosa of appendix - * *Definition* = A submucosa that is part of an appendix [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of an appendix [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * appendiceal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14992] - * appendix submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecal appendix submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of caecal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of vermix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermiform appendix submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermix submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * appendiceal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14992 ] + * appendix submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecal appendix submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of caecal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of vermix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermiform appendix submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermix submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005028.md b/md/UBERON/28/UBERON_0005028.md index 9e427c7ef4..c6fbc34358 100644 --- a/md/UBERON/28/UBERON_0005028.md +++ b/md/UBERON/28/UBERON_0005028.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005028 * *Label* = mucosa of maxillary sinus - * *Definition* = A mucosa that is part of a maxillary sinus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a maxillary sinus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antrum of highmore mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of highmore mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of highmore mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of highmore organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * maxillary sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * maxillary sinus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * maxillary sinus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * maxillary sinus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of antrum of highmore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of antrum of highmore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of maxillary sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of antrum of highmore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of maxillary sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of antrum of highmore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of maxillary sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antrum of highmore mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of highmore mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of highmore mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of highmore organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * maxillary sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * maxillary sinus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * maxillary sinus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * maxillary sinus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of antrum of highmore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of antrum of highmore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of maxillary sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of antrum of highmore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of maxillary sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of antrum of highmore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of maxillary sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [maxillary sinus](../../UBERON/64/UBERON_0001764.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005228.md b/md/UBERON/28/UBERON_0005228.md index 60de569f18..f59e0a5a59 100644 --- a/md/UBERON/28/UBERON_0005228.md +++ b/md/UBERON/28/UBERON_0005228.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005228 * *Label* = upper arm epithelium - * *Definition* = An epithelium that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005328.md b/md/UBERON/28/UBERON_0005328.md index b3ea03c75f..dfc59c3348 100644 --- a/md/UBERON/28/UBERON_0005328.md +++ b/md/UBERON/28/UBERON_0005328.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005328 * *Label* = mesonephric comma-shaped body - * *Definition* = The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061236] + * *Definition* = The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061236 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [comma-shaped body](../../UBERON/98/UBERON_0004198.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005428.md b/md/UBERON/28/UBERON_0005428.md index d5cb2af7dc..5b770b6e57 100644 --- a/md/UBERON/28/UBERON_0005428.md +++ b/md/UBERON/28/UBERON_0005428.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005428 * *Label* = vagal neural crest - * *Definition* = Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * post-otic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000818] + * post-otic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000818 ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005628.md b/md/UBERON/28/UBERON_0005628.md index a3547f2fe8..bd53922ed9 100644 --- a/md/UBERON/28/UBERON_0005628.md +++ b/md/UBERON/28/UBERON_0005628.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005628 * *Label* = ileal artery - * *Definition* = The ileal arteries feed oxygenated blood into the ileum, a portion of the small intestine in mammals, reptiles, and birds. They are branches of the superior mesenteric artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileal_arteries] + * *Definition* = The ileal arteries feed oxygenated blood into the ileum, a portion of the small intestine in mammals, reptiles, and birds. They are branches of the superior mesenteric artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileal_arteries ] ## Synonyms - * ileal branch of superior mesenteric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14809] - * arteriae ileales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileal_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ileal branch of superior mesenteric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14809 ] + * arteriae ileales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileal_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005728.md b/md/UBERON/28/UBERON_0005728.md index db8d6d3090..f833ce9e52 100644 --- a/md/UBERON/28/UBERON_0005728.md +++ b/md/UBERON/28/UBERON_0005728.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005728 * *Label* = extraembryonic mesoderm - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0005928.md b/md/UBERON/28/UBERON_0005928.md index fb579ee1e0..99c513644c 100644 --- a/md/UBERON/28/UBERON_0005928.md +++ b/md/UBERON/28/UBERON_0005928.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005928 * *Label* = external naris - * *Definition* = Surface structure that provides one of the small external openings of the head that give passage to air for breathing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nostril] + * *Definition* = Surface structure that provides one of the small external openings of the head that give passage to air for breathing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nostril ] * *Comment* = Fish have two pairs of external nostrils. ## Synonyms - * external nares [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * nostril [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59645[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003033] - * naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000550] - * blowhole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blowhole_(anatomy)] - * anterior nares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000544[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * anterior naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001427] + * external nares [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * nostril [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59645, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003033 ] + * naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000550 ] + * blowhole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blowhole_(anatomy) ] + * anterior nares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000544, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * anterior naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001427 ] ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA * SCTID:276165005 * TAO:0000550 - * UMLS:C0595944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nostril] + * UMLS:C0595944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nostril ] * VHOG:0000544 * Wikipedia:Nostril * XAO:0003033 @@ -59,8 +59,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass nasal opening (AAO:0000316)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In a tetrapod, the nasal sac has an external naris (homologous with the anterior naris of the fish) (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0006228.md b/md/UBERON/28/UBERON_0006228.md index 817a5826ed..fa9286a8d5 100644 --- a/md/UBERON/28/UBERON_0006228.md +++ b/md/UBERON/28/UBERON_0006228.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [exoccipital endochondral element](../../UBERON/51/UBERON_0015051.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0006328.md b/md/UBERON/28/UBERON_0006328.md index dd09946d42..6e3bad18c7 100644 --- a/md/UBERON/28/UBERON_0006328.md +++ b/md/UBERON/28/UBERON_0006328.md @@ -6,9 +6,9 @@ ## Synonyms - * intrinsic laryngeal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * intrinsic muscle of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55226] - * intrinsic laryneal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * intrinsic laryngeal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * intrinsic muscle of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55226 ] + * intrinsic laryneal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = each muscle listed separately.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0006428.md b/md/UBERON/28/UBERON_0006428.md index 45bf14407d..2cacd227ee 100644 --- a/md/UBERON/28/UBERON_0006428.md +++ b/md/UBERON/28/UBERON_0006428.md @@ -7,9 +7,9 @@ ## Synonyms - * basisphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000040] - * basisphnocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000169] - * propituital@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000169] + * basisphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000040 ] + * basisphnocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000169 ] + * propituital@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000169 ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Endochondral ossification of the ventromedial portion of the braincase.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0006728.md b/md/UBERON/28/UBERON_0006728.md index e16737cf0f..eacf8d9fad 100644 --- a/md/UBERON/28/UBERON_0006728.md +++ b/md/UBERON/28/UBERON_0006728.md @@ -6,9 +6,9 @@ ## Synonyms - * medial segment of left lobe of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14500] - * medial segment of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14500] - * segmentum mediale (lobus hepatis sinister) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14500] + * medial segment of left lobe of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14500 ] + * medial segment of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14500 ] + * segmentum mediale (lobus hepatis sinister) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14500 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0006828.md b/md/UBERON/28/UBERON_0006828.md index 0f34936869..08c40109b4 100644 --- a/md/UBERON/28/UBERON_0006828.md +++ b/md/UBERON/28/UBERON_0006828.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006828 * *Label* = trabecula carnea of atrium - * *Definition* = the supporting bundles of muscular fibers lining the walls of the atria[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010581] + * *Definition* = the supporting bundles of muscular fibers lining the walls of the atria[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010581 ] * *Comment* = Dubious: Not present in any AO. Note that WP states that trabecular carnea are ventricular and 'They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only' ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) and [trabecula carnea](../../UBERON/11/UBERON_0002511.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0007128.md b/md/UBERON/28/UBERON_0007128.md index a0a1107505..36d1d676f0 100644 --- a/md/UBERON/28/UBERON_0007128.md +++ b/md/UBERON/28/UBERON_0007128.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007128 * *Label* = glomeral mesenchyme - * *Definition* = Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960] + * *Definition* = Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960 ] ## Synonyms - * corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000110] - * glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000110] + * corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000110 ] + * glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000110 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0007228.md b/md/UBERON/28/UBERON_0007228.md index e8c167accc..750f406ed3 100644 --- a/md/UBERON/28/UBERON_0007228.md +++ b/md/UBERON/28/UBERON_0007228.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007228 * *Label* = vestibular nucleus - * *Definition* = The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_nuclei] + * *Definition* = The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_nuclei ] * *Comment* = See comments for 'vestibular nuclear complex. Consider adding subclasses. ## Synonyms - * vestibular VIII nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001032] - * vestibular nucleus of acoustic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54602] - * vestibular nucleus of eighth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54602] + * vestibular VIII nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001032 ] + * vestibular nucleus of acoustic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54602 ] + * vestibular nucleus of eighth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54602 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:54602 * MA:0001032 * SCTID:362462004 - * UMLS:C0042600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibular_Nucleus] + * UMLS:C0042600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibular_Nucleus ] * Wikipedia:Vestibular_nuclei * http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png * ncithesaurus:Vestibular_Nucleus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0007628.md b/md/UBERON/28/UBERON_0007628.md index c1c4d4e275..70b22880c2 100644 --- a/md/UBERON/28/UBERON_0007628.md +++ b/md/UBERON/28/UBERON_0007628.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007628 * *Label* = lateral septal complex - * *Definition* = The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003937[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + The_Online_Encyclopedia_and_Dictionary:http://www.fact-archive.com/] + * *Definition* = The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003937, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = The_Online_Encyclopedia_and_Dictionary:http://www.fact-archive.com/ ] ## Synonyms - * lateral septal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003937] + * lateral septal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003937 ] * lateral septum - * lateral septum complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LSX] + * lateral septum complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LSX ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0007728.md b/md/UBERON/28/UBERON_0007728.md index 1683a57702..7dc67bb843 100644 --- a/md/UBERON/28/UBERON_0007728.md +++ b/md/UBERON/28/UBERON_0007728.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007728 * *Label* = interphalangeal joint of pedal digit 5 - * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of pes that is part of a pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35365] - * interphalangeal joint of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35365] - * interphalangeal joint of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35365[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35365 ] + * interphalangeal joint of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35365 ] + * interphalangeal joint of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35365, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of pes](../../UBERON/21/UBERON_0007721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0007828.md b/md/UBERON/28/UBERON_0007828.md index 5fe21d51e9..d95626fee9 100644 --- a/md/UBERON/28/UBERON_0007828.md +++ b/md/UBERON/28/UBERON_0007828.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007828 * *Label* = girdle bone/zone - * *Definition* = A bone that is part of a appendage girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a appendage girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * girdle bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000291] + * girdle bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000291 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendage girdle region](../../UBERON/23/UBERON_0007823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0008428.md b/md/UBERON/28/UBERON_0008428.md index 7a0a6d90c7..ae8bf50eab 100644 --- a/md/UBERON/28/UBERON_0008428.md +++ b/md/UBERON/28/UBERON_0008428.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008428 * *Label* = ceratoglossus - * *Definition* = main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=56655] + * *Definition* = main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=56655 ] ## Synonyms - * ceratoglossus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=56655] - * musculus ceratoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=56655] + * ceratoglossus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=56655 ] + * musculus ceratoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=56655 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0008828.md b/md/UBERON/28/UBERON_0008828.md index d1fdd24372..e687d25f36 100644 --- a/md/UBERON/28/UBERON_0008828.md +++ b/md/UBERON/28/UBERON_0008828.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008828 * *Label* = presphenoid bone - * *Definition* = The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_of_sphenoid#Presphenoid[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/Presphenoid+bone] + * *Definition* = The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_of_sphenoid#Presphenoid, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/Presphenoid+bone ] * *Comment* = todo - account for developmental change ## Synonyms - * presphenoidal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SCTID:95949009] + * presphenoidal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SCTID:95949009 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0008928.md b/md/UBERON/28/UBERON_0008928.md index 1f95f90063..45bcb6bc1a 100644 --- a/md/UBERON/28/UBERON_0008928.md +++ b/md/UBERON/28/UBERON_0008928.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008928 * *Label* = sublaminar layers S2 or S3 - * *Definition* = One of sublaminar layers S2 or S3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = One of sublaminar layers S2 or S3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md)or[sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0009128.md b/md/UBERON/28/UBERON_0009128.md index 3574ffe3c0..cc81e9692e 100644 --- a/md/UBERON/28/UBERON_0009128.md +++ b/md/UBERON/28/UBERON_0009128.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral line placodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000440[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lateral line placodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000440, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Specialized series of dorsolateral ectodermal placodes.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010028.md b/md/UBERON/28/UBERON_0010028.md index 69f45497f0..d57832e5b3 100644 --- a/md/UBERON/28/UBERON_0010028.md +++ b/md/UBERON/28/UBERON_0010028.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010128.md b/md/UBERON/28/UBERON_0010128.md index 3c48c35ce4..4f6e3112dd 100644 --- a/md/UBERON/28/UBERON_0010128.md +++ b/md/UBERON/28/UBERON_0010128.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010128 * *Label* = future pterygopalatine ganglion - * *Definition* = A ganglion that has_potential_to_develop_into a pterygopalatine ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A ganglion that has_potential_to_develop_into a pterygopalatine ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * future Meckel ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future Meckel's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6965[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future nasal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future palatine ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future pterygopalatine ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future sphenopalatine ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * future sphenopalatine parasympathetic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000673] - * future sphenopalatine parasympathetic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001889[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * future Meckel ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future Meckel's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6965, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future nasal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future palatine ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future pterygopalatine ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future sphenopalatine ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * future sphenopalatine parasympathetic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000673 ] + * future sphenopalatine parasympathetic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001889, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [pterygopalatine ganglion](../../UBERON/62/UBERON_0003962.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010228.md b/md/UBERON/28/UBERON_0010228.md index 25534f8951..f03914bea1 100644 --- a/md/UBERON/28/UBERON_0010228.md +++ b/md/UBERON/28/UBERON_0010228.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010228 * *Label* = ruminal fluid - * *Definition* = A portion of organism substance that surrounded_by a rumen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of organism substance that surrounded_by a rumen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [rumen](../../UBERON/65/UBERON_0007365.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010328.md b/md/UBERON/28/UBERON_0010328.md index 03e1e8e42a..754b033b80 100644 --- a/md/UBERON/28/UBERON_0010328.md +++ b/md/UBERON/28/UBERON_0010328.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010328 * *Label* = limb bud mesenchyme - * *Definition* = Mesenchyme that is part of a limb bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a limb bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb bud](../../UBERON/47/UBERON_0004347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010428.md b/md/UBERON/28/UBERON_0010428.md index e896dcb78f..3997da271f 100644 --- a/md/UBERON/28/UBERON_0010428.md +++ b/md/UBERON/28/UBERON_0010428.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010428 * *Label* = flat bone - * *Definition* = Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment, the bones are expanded into broad, flat plates, as in the cranium, the ilium, sternum, rib cage, the sacrum and the scapula. These bones are composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow. In an adult, most red blood cells are formed in flat bones. In the cranial bones, the layers of compact tissue are familiarly known as the tables of the skull; the outer one is thick and tough; the inner is thin, dense, and brittle, and hence is termed the vitreous table. The intervening cancellous tissue is called the diploC+, and this, in certain regions of the skull, becomes absorbed so as to leave spaces filled with air (air-sinuses) between the two tables. The flat bones are: the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flat_bone] + * *Definition* = Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment, the bones are expanded into broad, flat plates, as in the cranium, the ilium, sternum, rib cage, the sacrum and the scapula. These bones are composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow. In an adult, most red blood cells are formed in flat bones. In the cranial bones, the layers of compact tissue are familiarly known as the tables of the skull; the outer one is thick and tough; the inner is thin, dense, and brittle, and hence is termed the vitreous table. The intervening cancellous tissue is called the diploC+, and this, in certain regions of the skull, becomes absorbed so as to leave spaces filled with air (air-sinuses) between the two tables. The flat bones are: the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flat_bone ] ## Synonyms - * os planum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flat_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os planum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flat_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7476 * SCTID:332907008 - * UMLS:C0222649 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flat_Bone] + * UMLS:C0222649 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flat_Bone ] * Wikipedia:Flat_bone * galen:FlatBone * ncithesaurus:Flat_Bone @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010528.md b/md/UBERON/28/UBERON_0010528.md index 043a8dd7c6..26b4bdd36d 100644 --- a/md/UBERON/28/UBERON_0010528.md +++ b/md/UBERON/28/UBERON_0010528.md @@ -6,7 +6,7 @@ ## Synonyms - * air space of bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24028] + * air space of bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24028 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010728.md b/md/UBERON/28/UBERON_0010728.md index fb3fbe9faa..c6ed73a879 100644 --- a/md/UBERON/28/UBERON_0010728.md +++ b/md/UBERON/28/UBERON_0010728.md @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [orbitosphenoid endochondral element](../../UBERON/59/UBERON_0015059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010728 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0010928.md b/md/UBERON/28/UBERON_0010928.md index e3463d1cba..10fc41c31c 100644 --- a/md/UBERON/28/UBERON_0010928.md +++ b/md/UBERON/28/UBERON_0010928.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010928 * *Label* = cricopharyngeus muscle - * *Definition* = The part of the Inferior pharyngeal constrictor muscle that arises from cricoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricopharyngeus#Origin_and_insertion] + * *Definition* = The part of the Inferior pharyngeal constrictor muscle that arises from cricoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricopharyngeus#Origin_and_insertion ] * *Comment* = muscle belly ## Synonyms - * cricopharyngeal part of inferior constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46661] - * cricopharyngeal part of inferior pharyngeal constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46661] + * cricopharyngeal part of inferior constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46661 ] + * cricopharyngeal part of inferior pharyngeal constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46661 ] * cricopharyngeal part of inferior pharyngeal constrictor muscle - * cricopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46661] + * cricopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46661 ] * cricopharyngeus portion of the inferior pharyngeal constrictor - * pars cricopharyngea (musculus constrictor pharyngis inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46661] - * pars cricopharyngea musculus constrictoris pharyngis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars cricopharyngea (musculus constrictor pharyngis inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46661 ] + * pars cricopharyngea musculus constrictoris pharyngis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * cricopharyngeal part ## Cross-references * FMA:46661 * SCTID:244804002 - * UMLS:C0224214 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricopharyngeus_Muscle] + * UMLS:C0224214 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricopharyngeus_Muscle ] * Wikipedia:Cricopharyngeus#Origin_and_insertion * ncithesaurus:Cricopharyngeus_Muscle @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. , and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010928 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0011528.md b/md/UBERON/28/UBERON_0011528.md index 37cfbe91bc..b5e838a59d 100644 --- a/md/UBERON/28/UBERON_0011528.md +++ b/md/UBERON/28/UBERON_0011528.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011528 * *Label* = pubococcygeus muscle - * *Definition* = The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] + * *Definition* = The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] ## Synonyms - * levator prostatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19090] - * musculus pubococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus pubovaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * %22pc%22 muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * coccygeus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * kegel muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * levator ani-pubococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * levator ani-puborectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * pc muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * pubococcygeal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * pubococcygeal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] - * pubococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubococcygeus_muscle] + * levator prostatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19090 ] + * musculus pubococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus pubovaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * %22pc%22 muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * coccygeus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * kegel muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * levator ani-pubococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * levator ani-puborectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * pc muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * pubococcygeal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * pubococcygeal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] + * pubococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubococcygeus_muscle ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0011628.md b/md/UBERON/28/UBERON_0011628.md index 5b0d3d23e5..fa9233c299 100644 --- a/md/UBERON/28/UBERON_0011628.md +++ b/md/UBERON/28/UBERON_0011628.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0011828.md b/md/UBERON/28/UBERON_0011828.md index dabd6cb4e0..f396fe957c 100644 --- a/md/UBERON/28/UBERON_0011828.md +++ b/md/UBERON/28/UBERON_0011828.md @@ -22,7 +22,7 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [tubercle](../../UBERON/13/UBERON_0005813.md) * [part_of](../../BFO/50/BFO_0000050.md) some [nipple](../../UBERON/30/UBERON_0002030.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [areolar gland](../../UBERON/27/UBERON_0011827.md) ## Equivalencies @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011828 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0012128.md b/md/UBERON/28/UBERON_0012128.md index 07c70387c4..ef48ecd65d 100644 --- a/md/UBERON/28/UBERON_0012128.md +++ b/md/UBERON/28/UBERON_0012128.md @@ -6,10 +6,10 @@ ## Synonyms - * apex nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * apex of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59518] - * nasal tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59518] - * tip of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59518] + * apex nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * apex of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59518 ] + * nasal tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59518 ] + * tip of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59518 ] * snout tip * tip of snout @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0012328.md b/md/UBERON/28/UBERON_0012328.md index ac345d0963..feef79efb3 100644 --- a/md/UBERON/28/UBERON_0012328.md +++ b/md/UBERON/28/UBERON_0012328.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012328 * *Label* = penile spine - * *Definition* = Keratinized structures along the glans and/or shaft of their penis that may be involved in sexual selection. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Penile_spines] + * *Definition* = Keratinized structures along the glans and/or shaft of their penis that may be involved in sexual selection. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Penile_spines ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_40674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012328 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0012428.md b/md/UBERON/28/UBERON_0012428.md index 88a4753949..3c2da84479 100644 --- a/md/UBERON/28/UBERON_0012428.md +++ b/md/UBERON/28/UBERON_0012428.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [brush border layer](../../UBERON/24/UBERON_0012424.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal convoluted tubule](../../UBERON/87/UBERON_0001287.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0013128.md b/md/UBERON/28/UBERON_0013128.md index d6e0bd60ed..836f8ec320 100644 --- a/md/UBERON/28/UBERON_0013128.md +++ b/md/UBERON/28/UBERON_0013128.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013128 * *Label* = bulb of penis - * *Definition* = Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] + * *Definition* = Just before each crus of the penis meets its fellow it presents a slight enlargement, named by Kobelt the bulb of the corpus spongiosum penis. It is homologous to the vestibular bulbs in females. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] ## Synonyms - * bulbus penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * penile bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19614] - * urethral bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19614] - * bulb of the corpus cavernosum penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] - * bulb of the corpus spongiousum penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] - * bulb of the penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] - * bulb of the urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] - * urethral bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulb_of_penis] + * bulbus penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * penile bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19614 ] + * urethral bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19614 ] + * bulb of the corpus cavernosum penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] + * bulb of the corpus spongiousum penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] + * bulb of the penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] + * bulb of the urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] + * urethral bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulb_of_penis ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013128 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0013228.md b/md/UBERON/28/UBERON_0013228.md index b8c2e966cc..c2bff141a2 100644 --- a/md/UBERON/28/UBERON_0013228.md +++ b/md/UBERON/28/UBERON_0013228.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013228 * *Label* = sweat gland of eyelid - * *Definition* = Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (18321914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gland_of_Moll] + * *Definition* = Glands of Moll, also known as ciliary glands, are modified apocrine sweat glands that are found on the margin of the eyelid. They are next to the base of the eyelashes, and anterior to the Meibomian glands within the distal eyelid margin. These glands are relatively large and tubular-shaped. The glands of Moll are named after Dutch oculist Jacob Anton Moll (18321914). Glands of Moll empty into the adjacent lashes. Glands of Moll and Zeis secrete lipid that adds to the superficial layer of the tear film, retarding evaporation. The glands of Moll are prone to infection and blockage of its duct with sebum and cell debris. Blockage of the gland's duct causes swelling which can manifest itself as a stye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gland_of_Moll ] ## Synonyms - * Moll's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59159] - * ciliary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59159] - * ciliary gland of moll [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59159] - * ciliary sweat gland of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59159] - * gland of Moll [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59159] + * Moll's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59159 ] + * ciliary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59159 ] + * ciliary gland of moll [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59159 ] + * ciliary sweat gland of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59159 ] + * gland of Moll [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59159 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apocrine sweat gland](../../UBERON/82/UBERON_0000382.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013228 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0013428.md b/md/UBERON/28/UBERON_0013428.md index 57f61f3adc..cb983ba67a 100644 --- a/md/UBERON/28/UBERON_0013428.md +++ b/md/UBERON/28/UBERON_0013428.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013428 * *Label* = ophryon - * *Definition* = The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophryon] + * *Definition* = The ophryon is the point in the forehead just above the optic foramen, or eyesocket, and glabella. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophryon ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013428 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0013528.md b/md/UBERON/28/UBERON_0013528.md index 2a19652acf..9b76a4f42a 100644 --- a/md/UBERON/28/UBERON_0013528.md +++ b/md/UBERON/28/UBERON_0013528.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013528 * *Label* = Brodmann (1909) area 11 - * *Definition* = Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_11] + * *Definition* = Brodmann area 11 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning, reasoning, and decision making. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_11 ] ## Synonyms - * B09-11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1742] - * Brodmann (1909) area 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1742] - * Brodmann area 11, prefrontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1742] - * area 11 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68608] - * area 11 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1742] - * medial orbital area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68608] - * B09-11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1742[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area praefrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1742] - * area 11 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036] - * area 11 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_11] - * area orbitalis interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brodmann's area 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036] - * prefrontal area 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_11] + * B09-11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1742 ] + * Brodmann (1909) area 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1742 ] + * Brodmann area 11, prefrontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1742 ] + * area 11 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68608 ] + * area 11 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1742 ] + * medial orbital area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68608 ] + * B09-11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1742, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area praefrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1742 ] + * area 11 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036 ] + * area 11 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_11 ] + * area orbitalis interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brodmann's area 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036 ] + * prefrontal area 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_11 ] ## Cross-references * FMA:68608 * NIF_GrossAnatomy:birnlex_1742 - * NeuroNames:1036 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1742] - * UMLS:C1272533 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1742] + * NeuroNames:1036 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1742 ] + * UMLS:C1272533 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1742 ] * Wikipedia:Brodmann_area_11 ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0013628.md b/md/UBERON/28/UBERON_0013628.md index 2dbd7747e7..53b6e527ae 100644 --- a/md/UBERON/28/UBERON_0013628.md +++ b/md/UBERON/28/UBERON_0013628.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0014528.md b/md/UBERON/28/UBERON_0014528.md index d542042b73..36194a3c43 100644 --- a/md/UBERON/28/UBERON_0014528.md +++ b/md/UBERON/28/UBERON_0014528.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014528 * *Label* = extreme capsule - * *Definition* = Thin band of fibers separating the claustrum from the insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010014] + * *Definition* = Thin band of fibers separating the claustrum from the insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010014 ] ## Synonyms - * band of Baillarger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extreme_capsule] - * capsula extrema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extreme_capsule] + * band of Baillarger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extreme_capsule ] + * capsula extrema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extreme_capsule ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Extreme capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The extreme capsule is a sheet-like fiber bundle located lateral to the clausturm and medial to the insula which projects dorsally to the white matter underlying the cerebral cortex[FMA:61960]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The extreme capsule is a long association fiber pathway of white matter in the brain that provides bidirectional communication between such areas as the claustrum and the insular cortex, and the inferior frontal gyrus and the middle-posterior portion of the superior temporal gyrus. Its fibers are near to but can be distinguished by MRI tractography from adjacent fiber bundles such as the uncinate fasciculus, the external capsule, the arcuate fascicle, and the medial, inferior and superior longitudinal fascicles. Given its bidirectional connection between the Broca's and Werniche's speech areas it could have a role in language[Wikipedia:Extreme_capsule, Wikipedia:Extreme_capsule]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Thin band of fibers separating the claustrum from the insular cortex - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014528 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0014628.md b/md/UBERON/28/UBERON_0014628.md index 40c7aca6d7..884cac51f2 100644 --- a/md/UBERON/28/UBERON_0014628.md +++ b/md/UBERON/28/UBERON_0014628.md @@ -6,13 +6,13 @@ ## Synonyms - * vestibular fissure of the cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2558[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * vestibular fissure of the cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2558, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_2558 * SCTID:279772000 - * UMLS:C0458761 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2558] + * UMLS:C0458761 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2558 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014628 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_0015028.md b/md/UBERON/28/UBERON_0015028.md index b48059bdea..153201d2a0 100644 --- a/md/UBERON/28/UBERON_0015028.md +++ b/md/UBERON/28/UBERON_0015028.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015028 * *Label* = manual digit 4 phalanx endochondral element - * *Definition* = A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 4 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 4 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 4 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 4 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit 4 phalanx cartilage element](../../UBERON/78/UBERON_0010678.md)or[manual digit 4 phalanx pre-cartilage condensation](../../UBERON/78/UBERON_0010578.md)or[manual digit 4 phalanx](../../UBERON/38/UBERON_0003638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015028 + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2000228.md b/md/UBERON/28/UBERON_2000228.md index 94619b1342..a23b949760 100644 --- a/md/UBERON/28/UBERON_2000228.md +++ b/md/UBERON/28/UBERON_2000228.md @@ -6,8 +6,8 @@ ## Synonyms - * lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000228[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * llp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000228] + * lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000228, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * llp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000228 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2000528.md b/md/UBERON/28/UBERON_2000528.md index 77b2a972e0..63478f185a 100644 --- a/md/UBERON/28/UBERON_2000528.md +++ b/md/UBERON/28/UBERON_2000528.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2000628.md b/md/UBERON/28/UBERON_2000628.md index b75c6fbbd7..ad21f823fd 100644 --- a/md/UBERON/28/UBERON_2000628.md +++ b/md/UBERON/28/UBERON_2000628.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2000728.md b/md/UBERON/28/UBERON_2000728.md index 2951179202..60f01147ff 100644 --- a/md/UBERON/28/UBERON_2000728.md +++ b/md/UBERON/28/UBERON_2000728.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000728 * *Label* = somite 2 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 2 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2000928.md b/md/UBERON/28/UBERON_2000928.md index 5fe9c35284..1c4a17b2ed 100644 --- a/md/UBERON/28/UBERON_2000928.md +++ b/md/UBERON/28/UBERON_2000928.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000928 * *Label* = myotome somite 19 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.> [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.> [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001028.md b/md/UBERON/28/UBERON_2001028.md index 90493adb4e..88111b2650 100644 --- a/md/UBERON/28/UBERON_2001028.md +++ b/md/UBERON/28/UBERON_2001028.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001028 * *Label* = hypurapophysis - * *Definition* = Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The structure, the processus parhypurale, was given the name of hypurapophysis by Nursall (1963). Additional processes may be present on the lateral walls of hypurals 1 and 2 in some teleost subgroups. They are named primary, secondary hypurapophyses, etc. ## Synonyms - * hypurapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001028[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * parhypurapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001028] - * parhypurapophyses processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001028] + * hypurapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001028, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * parhypurapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001028 ] + * parhypurapophyses processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001028 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001228.md b/md/UBERON/28/UBERON_2001228.md index 9685d13222..21459fada7 100644 --- a/md/UBERON/28/UBERON_2001228.md +++ b/md/UBERON/28/UBERON_2001228.md @@ -6,9 +6,9 @@ ## Synonyms - * branchial arch 1 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001228] - * gill arch 1 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001228] - * visceral arch 3 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001228] + * branchial arch 1 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001228 ] + * gill arch 1 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001228 ] + * visceral arch 3 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001228 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001428.md b/md/UBERON/28/UBERON_2001428.md index 1286542b7e..1c2accbe6a 100644 --- a/md/UBERON/28/UBERON_2001428.md +++ b/md/UBERON/28/UBERON_2001428.md @@ -6,7 +6,7 @@ ## Synonyms - * nasal rosette [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001428] + * nasal rosette [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001428 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001528.md b/md/UBERON/28/UBERON_2001528.md index a602659335..5047da9379 100644 --- a/md/UBERON/28/UBERON_2001528.md +++ b/md/UBERON/28/UBERON_2001528.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001528 * *Label* = epibranchial 1 cartilage - * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001728.md b/md/UBERON/28/UBERON_2001728.md index f61acfdcc2..11b9e1eb90 100644 --- a/md/UBERON/28/UBERON_2001728.md +++ b/md/UBERON/28/UBERON_2001728.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001728 * *Label* = caudal principal ray 16 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 15. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 15. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001828.md b/md/UBERON/28/UBERON_2001828.md index 0708d8e53a..98bf538ce6 100644 --- a/md/UBERON/28/UBERON_2001828.md +++ b/md/UBERON/28/UBERON_2001828.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001828 * *Label* = primordial ligament - * *Definition* = Ligament that connects the maxilla with the lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that connects the maxilla with the lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonym articular-maxillary ligament (Alexander 1964). ## Synonyms - * articular-maxillary ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001828] - * ligamentum primordiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001828] - * maxillo-mandibular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001828] + * articular-maxillary ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001828 ] + * ligamentum primordiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001828 ] + * maxillo-mandibular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001828 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2001928.md b/md/UBERON/28/UBERON_2001928.md index f9b2305674..b48470c891 100644 --- a/md/UBERON/28/UBERON_2001928.md +++ b/md/UBERON/28/UBERON_2001928.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001928 * *Label* = articular fossa of opercle - * *Definition* = Fossa of opercle that articulates with hyomandibular condyle for opercle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fossa of opercle that articulates with hyomandibular condyle for opercle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2002028.md b/md/UBERON/28/UBERON_2002028.md index 704d7e6a16..8491f107bb 100644 --- a/md/UBERON/28/UBERON_2002028.md +++ b/md/UBERON/28/UBERON_2002028.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002028 * *Label* = pectoral fin proximal radial bone 3 - * *Definition* = pectoral fin proximal radial 3 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 3 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * third pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002028] + * third pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002028 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin proximal radial element 3](../../UBERON/28/UBERON_2102028.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2002128.md b/md/UBERON/28/UBERON_2002128.md index 594014c66f..08217faed1 100644 --- a/md/UBERON/28/UBERON_2002128.md +++ b/md/UBERON/28/UBERON_2002128.md @@ -6,7 +6,7 @@ ## Synonyms - * cavum sinus impar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002128] + * cavum sinus impar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002128 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2005228.md b/md/UBERON/28/UBERON_2005228.md index 610666e218..431c3ba84b 100644 --- a/md/UBERON/28/UBERON_2005228.md +++ b/md/UBERON/28/UBERON_2005228.md @@ -6,7 +6,7 @@ ## Synonyms - * segmented ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005228] + * segmented ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005228 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2007028.md b/md/UBERON/28/UBERON_2007028.md index ea3a117c44..607e594b04 100644 --- a/md/UBERON/28/UBERON_2007028.md +++ b/md/UBERON/28/UBERON_2007028.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2102028.md b/md/UBERON/28/UBERON_2102028.md index fa9f6a7ad0..7752a0418f 100644 --- a/md/UBERON/28/UBERON_2102028.md +++ b/md/UBERON/28/UBERON_2102028.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2102028 * *Label* = pectoral fin proximal radial element 3 - * *Definition* = Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral fin proximal radial element that is the third most anterior or dorsal pectoral fin radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * third pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002028] + * third pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002028 ] ## Cross-references @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_2202028.md b/md/UBERON/28/UBERON_2202028.md index aa4535a84b..229c07de95 100644 --- a/md/UBERON/28/UBERON_2202028.md +++ b/md/UBERON/28/UBERON_2202028.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202028 * *Label* = pectoral fin proximal radial cartilage 3 - * *Definition* = pectoral fin proximal radial 3 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 3 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * third pectoral basal radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002028] + * third pectoral basal radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002028 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin proximal radial element 3](../../UBERON/28/UBERON_2102028.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3000428.md b/md/UBERON/28/UBERON_3000428.md index 23d84a521d..6a4d790891 100644 --- a/md/UBERON/28/UBERON_3000428.md +++ b/md/UBERON/28/UBERON_3000428.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3000628.md b/md/UBERON/28/UBERON_3000628.md index 70662bfec1..67f03f56ae 100644 --- a/md/UBERON/28/UBERON_3000628.md +++ b/md/UBERON/28/UBERON_3000628.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000628 * *Label* = ventral ramus of squamosal - * *Definition* = Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus posterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000628] + * processus posterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000628 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3000728.md b/md/UBERON/28/UBERON_3000728.md index 9f8b04c84f..22fef95567 100644 --- a/md/UBERON/28/UBERON_3000728.md +++ b/md/UBERON/28/UBERON_3000728.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000728 * *Label* = nucal keel - * *Definition* = Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Duellman_and_Trueb_1994] + * *Definition* = Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Duellman_and_Trueb_1994 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3000828.md b/md/UBERON/28/UBERON_3000828.md index aa086ad5a1..ca5e3941b7 100644 --- a/md/UBERON/28/UBERON_3000828.md +++ b/md/UBERON/28/UBERON_3000828.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000828 * *Label* = margo posterior of cleithrum - * *Definition* = Posterior margin of the posterior ramus of the cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior margin of the posterior ramus of the cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010128.md b/md/UBERON/28/UBERON_3010128.md index 4aca6b1263..73c0043ea3 100644 --- a/md/UBERON/28/UBERON_3010128.md +++ b/md/UBERON/28/UBERON_3010128.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010128 * *Label* = taeniae tecti marginalis - * *Definition* = Compose lateral rim of frontoparietal fenestra, ventrally confluent with orbital cartilages, posteriorly confluent with tectum synoticum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Compose lateral rim of frontoparietal fenestra, ventrally confluent with orbital cartilages, posteriorly confluent with tectum synoticum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010328.md b/md/UBERON/28/UBERON_3010328.md index 3134956874..44dbbab405 100644 --- a/md/UBERON/28/UBERON_3010328.md +++ b/md/UBERON/28/UBERON_3010328.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010428.md b/md/UBERON/28/UBERON_3010428.md index 69600375e4..d762f3d7c5 100644 --- a/md/UBERON/28/UBERON_3010428.md +++ b/md/UBERON/28/UBERON_3010428.md @@ -25,8 +25,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/28/UBERON_3010528.md b/md/UBERON/28/UBERON_3010528.md index 073fad8c19..b005d52ab3 100644 --- a/md/UBERON/28/UBERON_3010528.md +++ b/md/UBERON/28/UBERON_3010528.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010628.md b/md/UBERON/28/UBERON_3010628.md index 579530b55e..8e2960d33e 100644 --- a/md/UBERON/28/UBERON_3010628.md +++ b/md/UBERON/28/UBERON_3010628.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010628 * *Label* = dorsal ramus of occulomotor nerve - * *Definition* = Innervates m. rectus superior (m. dorsal rectus). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Innervates m. rectus superior (m. dorsal rectus). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010728.md b/md/UBERON/28/UBERON_3010728.md index 6549aa2d99..91c37873a0 100644 --- a/md/UBERON/28/UBERON_3010728.md +++ b/md/UBERON/28/UBERON_3010728.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010728 * *Label* = otic opercular element - * *Definition* = Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:DBW] + * *Definition* = Round, flat bone or cartilage that lies in the fenestra ovalis and articulates with the columella. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:DBW ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_3010828.md b/md/UBERON/28/UBERON_3010828.md index 9e22eefa06..d7fca15c99 100644 --- a/md/UBERON/28/UBERON_3010828.md +++ b/md/UBERON/28/UBERON_3010828.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_4000028.md b/md/UBERON/28/UBERON_4000028.md index da964535a8..0796757909 100644 --- a/md/UBERON/28/UBERON_4000028.md +++ b/md/UBERON/28/UBERON_4000028.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000028 * *Label* = integumentary papilla - * *Definition* = Odontogenic papilla that is located in the integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontogenic papilla that is located in the integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * scale papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * scale papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_4200028.md b/md/UBERON/28/UBERON_4200028.md index e232cd2079..5b53074377 100644 --- a/md/UBERON/28/UBERON_4200028.md +++ b/md/UBERON/28/UBERON_4200028.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_4200128.md b/md/UBERON/28/UBERON_4200128.md index b1e2f158c2..ef6fb77ff8 100644 --- a/md/UBERON/28/UBERON_4200128.md +++ b/md/UBERON/28/UBERON_4200128.md @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [core#subdivision_of](../../core#subdivision/of/core#subdivision_of.md) some [synarcual region](../../UBERON/29/UBERON_4200129.md) and [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/28/UBERON_4300028.md b/md/UBERON/28/UBERON_4300028.md index 36b9e7ab0e..4cf58d6c01 100644 --- a/md/UBERON/28/UBERON_4300028.md +++ b/md/UBERON/28/UBERON_4300028.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300028 * *Label* = posterior ventrolateral plate - * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * *Definition* = Dermal bone that is part of the scapular complex in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Synonyms - * PVL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young, 2004]] + * PVL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young, 2004] ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0000029.md b/md/UBERON/29/UBERON_0000029.md index c45ea27bad..16d43a974d 100644 --- a/md/UBERON/29/UBERON_0000029.md +++ b/md/UBERON/29/UBERON_0000029.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000029 * *Label* = lymph node - * *Definition* = Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:947[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node] + * *Definition* = Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:947, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node ] ## Synonyms - * lymph gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001273] - * nodus lymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lymph gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001273 ] + * nodus lymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA * SCTID:181756000 * TAO:0005318 - * UMLS:C0024204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node] + * UMLS:C0024204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node ] * VHOG:0001273 * Wikipedia:Lymph_node * ZFA:0005318 @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_32443 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0000329.md b/md/UBERON/29/UBERON_0000329.md index 841daebe89..a75a4b05dd 100644 --- a/md/UBERON/29/UBERON_0000329.md +++ b/md/UBERON/29/UBERON_0000329.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000329 * *Label* = hair root - * *Definition* = The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000555[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hair_root] + * *Definition* = The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000555, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hair_root ] ## Synonyms - * root of hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70730] + * root of hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70730 ] ## Cross-references * BTO:0000555 * CALOHA:TS-0433 * FMA:70730 - * UMLS:C1182707 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair_Root] + * UMLS:C1182707 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair_Root ] * Wikipedia:Hair_root * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray944.png/200px-Gray944.png * ncithesaurus:Hair_Root @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0000429.md b/md/UBERON/29/UBERON_0000429.md index 867e1313ae..881ca48130 100644 --- a/md/UBERON/29/UBERON_0000429.md +++ b/md/UBERON/29/UBERON_0000429.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000429 * *Label* = enteric plexus - * *Definition* = A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002437] + * *Definition* = A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002437 ] ## Synonyms - * enteric nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77597] - * intrinsic nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001147] - * plexus entericus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002437] - * plexus nervosus entericus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77597[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sympathetic enteric nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77597] + * enteric nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77597 ] + * intrinsic nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001147 ] + * plexus entericus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002437 ] + * plexus nervosus entericus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77597, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sympathetic enteric nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77597 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve plexus](../../UBERON/10/UBERON_0001810.md) and [part_of](../../BFO/50/BFO_0000050.md) some [enteric nervous system](../../UBERON/05/UBERON_0002005.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0012372 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0000929.md b/md/UBERON/29/UBERON_0000929.md index b087d54133..45d0176549 100644 --- a/md/UBERON/29/UBERON_0000929.md +++ b/md/UBERON/29/UBERON_0000929.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000929 * *Label* = pharyngeal branch of vagus nerve - * *Definition* = Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_part_of_vagus_nerve] + * *Definition* = Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_part_of_vagus_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * pharyngeal branch * pharyngeal branch of inferior vagal ganglion - * pharyngeal branch of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6234] + * pharyngeal branch of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6234 ] * pharyngeal branch of vagus nerve * ramus pharyngealis nervi vagalis - * ramus pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6234[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ramus pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6234, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tenth cranial nerve pharyngeal branch * vagal pharyngeal branch * vagus nerve pharyngeal branch - * ramus pharyngeus nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_part_of_vagus_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ramus pharyngeus nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_part_of_vagus_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001029.md b/md/UBERON/29/UBERON_0001029.md index 119eee46f5..660974acce 100644 --- a/md/UBERON/29/UBERON_0001029.md +++ b/md/UBERON/29/UBERON_0001029.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001029 * *Label* = neuromuscular junction - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuromuscular_junction] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuromuscular_junction ] * *Comment* = TODO - use GO ## Synonyms * myoneural junction - * synapsis neuromuscularis; junctio neuromuscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuromuscular_junction[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * synapsis neuromuscularis; junctio neuromuscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuromuscular_junction, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001129.md b/md/UBERON/29/UBERON_0001129.md index 15b7170deb..f524d3771a 100644 --- a/md/UBERON/29/UBERON_0001129.md +++ b/md/UBERON/29/UBERON_0001129.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001129 * *Label* = subscapularis muscle - * *Definition* = The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subscapularis_muscle] + * *Definition* = The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subscapularis_muscle ] * *Comment* = Dorsal group[Kardong] ## Synonyms - * subscapularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002388] - * musculus subscapularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subscapularis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subcoracoscapularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * subscapularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002388 ] + * musculus subscapularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subscapularis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subcoracoscapularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002388 * OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA * SCTID:277446000 - * UMLS:C0584884 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subscapularis] + * UMLS:C0584884 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subscapularis ] * VHOG:0000850 * Wikipedia:Subscapularis_muscle * http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001229.md b/md/UBERON/29/UBERON_0001229.md index 47c9b2fd06..6e6bab0935 100644 --- a/md/UBERON/29/UBERON_0001229.md +++ b/md/UBERON/29/UBERON_0001229.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001229 * *Label* = renal corpuscle - * *Definition* = In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_corpuscle] + * *Definition* = In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_corpuscle ] * *Comment* = Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ## Synonyms - * Malpighian corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005281] - * corpusculum renale [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Malpighian corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005281 ] + * corpusculum renale [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * malphigian corpuscle - * corpusculum renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_corpuscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortical renal corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000376] - * kidney corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_corpuscle] - * malphighian corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000376] + * corpusculum renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_corpuscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortical renal corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000376 ] + * kidney corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_corpuscle ] + * malphighian corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000376 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0000376 * SCTID:361329009 * TAO:0005281 - * UMLS:C0227635 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Corpuscle] + * UMLS:C0227635 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Corpuscle ] * VHOG:0001262 * Wikipedia:Renal_corpuscle * ZFA:0005281 @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated. Paired highly vascularized structures of the pronephros, responsible for blood filtration.[XAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the nephron that filters blood.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001329.md b/md/UBERON/29/UBERON_0001329.md index a27cfb5b8c..5d8f4a4e5e 100644 --- a/md/UBERON/29/UBERON_0001329.md +++ b/md/UBERON/29/UBERON_0001329.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001329 * *Label* = prostate gland anterior lobe - * *Definition* = the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001163] + * *Definition* = the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001163 ] * *Comment* = comment: todo - check - see comments from PMID:15163300 ## Synonyms - * anterior lobe of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19574] + * anterior lobe of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19574 ] * anterior lobe of prostate gland - * commissura prostatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19574[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * commissura prostatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19574, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * commissure of prostate * isthmus of prostate * isthmus of prostate gland - * isthmus prostatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19574[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * isthmus prostatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19574, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * prostate gland anterior lobe * prostatic isthmus * anterior prostate @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001429.md b/md/UBERON/29/UBERON_0001429.md index 6306d20798..99443d17cb 100644 --- a/md/UBERON/29/UBERON_0001429.md +++ b/md/UBERON/29/UBERON_0001429.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001429 * *Label* = pisiform - * *Definition* = A laterally positioned sesamoid bone found in close proximity with and occasionally fused to the ulnare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = A laterally positioned sesamoid bone found in close proximity with and occasionally fused to the ulnare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Check: accessory carpal ## Synonyms - * pisiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23718] - * accessory carpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001339] - * os pisiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pisiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pisiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23718 ] + * accessory carpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001339 ] + * os pisiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pisiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA * SCTID:181966004 * SCTID:9181003 - * UMLS:C0223729 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pisiform_Bone] + * UMLS:C0223729 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pisiform_Bone ] * Wikipedia:Pisiform_bone * galen:Pisiform * http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001529.md b/md/UBERON/29/UBERON_0001529.md index 99879131f7..61e01a72e8 100644 --- a/md/UBERON/29/UBERON_0001529.md +++ b/md/UBERON/29/UBERON_0001529.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001529 * *Label* = brachiocephalic artery - * *Definition* = The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_artery] + * *Definition* = The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_artery ] ## Synonyms - * brachiocephalic trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001922] + * brachiocephalic trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001922 ] * innominate artery - * truncus brachiocephalicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3932[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * truncus brachiocephalicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3932, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * innominate - * truncus brachiocephalicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachiocephalic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * truncus brachiocephalicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachiocephalic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A07.231.114.145 * OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA * SCTID:244244002 - * UMLS:C0006094 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Innominate_Artery] + * UMLS:C0006094 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Innominate_Artery ] * Wikipedia:Brachiocephalic_artery * galen:BrachioCephalicArtery * http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001629.md b/md/UBERON/29/UBERON_0001629.md index 90671f7e16..12fac3a1d9 100644 --- a/md/UBERON/29/UBERON_0001629.md +++ b/md/UBERON/29/UBERON_0001629.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001629 * *Label* = carotid body - * *Definition* = The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_body] + * *Definition* = The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_body ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * glomus caroticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glomus caroticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002463 * MESH:A08.800.550.700.120.600.150 * SCTID:362586000 - * UMLS:C0007277 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carotid_Body] + * UMLS:C0007277 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carotid_Body ] * Wikipedia:Carotid_body * http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray1186.png/200px-Gray1186.png @@ -36,8 +36,8 @@ * [mixed endoderm/mesoderm-derived structure](../../UBERON/77/UBERON_0000077.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [common carotid artery plus branches](../../UBERON/30/UBERON_0001530.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [external carotid artery](../../UBERON/70/UBERON_0001070.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [internal carotid artery](../../UBERON/32/UBERON_0001532.md) ## Equivalencies @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001729.md b/md/UBERON/29/UBERON_0001729.md index 418851409f..8e5fc0950d 100644 --- a/md/UBERON/29/UBERON_0001729.md +++ b/md/UBERON/29/UBERON_0001729.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001729 * *Label* = oropharynx - * *Definition* = The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oropharynx] + * *Definition* = The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oropharynx ] ## Synonyms * oral part of pharynx - * mesopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharynx] - * pars oralis pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oropharynx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mesopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharynx ] + * pars oralis pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oropharynx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A03.867.603 * OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA * SCTID:263376008 - * UMLS:C0521367 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oropharynx] + * UMLS:C0521367 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oropharynx ] * VHOG:0000457 * VSAO:0000034 * Wikipedia:Oropharynx @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the three anatomic divisions of the pharynx that lies posterior to the mouth and is continuous above with the nasopharynx and below with the laryngopharynx. It extends behind the mouth from the soft palate above to the level of the hyoid bone below and contains the palatine and lingual tonsils. [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = oropharyngeal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001829.md b/md/UBERON/29/UBERON_0001829.md index eecc7dd4fb..935ae58440 100644 --- a/md/UBERON/29/UBERON_0001829.md +++ b/md/UBERON/29/UBERON_0001829.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001829 * *Label* = major salivary gland - * *Definition* = the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003792] + * *Definition* = the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003792 ] * *Comment* = There are 3 pairs of major salivary glands in human and mouse[ISBN10:0123813611] ## Synonyms @@ -14,7 +14,7 @@ * FMA:59788 * MA:0002478 * SCTID:303049006 - * UMLS:C0930553 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Major_Salivary_Gland] + * UMLS:C0930553 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Major_Salivary_Gland ] * galen:MajorSalivaryGland * ncithesaurus:Major_Salivary_Gland @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0001929.md b/md/UBERON/29/UBERON_0001929.md index 7d43d4d4a6..cb62f21ed9 100644 --- a/md/UBERON/29/UBERON_0001929.md +++ b/md/UBERON/29/UBERON_0001929.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001929 * *Label* = supraoptic nucleus - * *Definition* = The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraoptic_nucleus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] + * *Definition* = The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraoptic_nucleus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nucleus supraopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002697] + * nucleus supraopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002697 ] * supra-optic nucleus * supraoptic nucleus of hypothalamus - * SO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1411[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus supraopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraoptic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus supraopticus hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:385[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tangentialis (Riley) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:385[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * supraoptic nucleus proper (Lenhossek) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:385] - * supraoptic nucleus, general [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:385] - * supraoptic nucleus, proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SO] + * SO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1411, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus supraopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraoptic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus supraopticus hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:385, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tangentialis (Riley) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:385, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * supraoptic nucleus proper (Lenhossek) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:385 ] + * supraoptic nucleus, general [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:385 ] + * supraoptic nucleus, proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SO ] ## Cross-references @@ -33,9 +33,9 @@ * MA:0000849 * MESH:A08.186.211.730.385.357.342.650 * NIF_GrossAnatomy:birnlex_1411 - * NeuroNames:385 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1411] + * NeuroNames:385 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1411 ] * SCTID:369130007 - * UMLS:C0038869 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1411] + * UMLS:C0038869 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1411 ] * Wikipedia:Supraoptic_nucleus * http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg * http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg @@ -61,8 +61,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002029.md b/md/UBERON/29/UBERON_0002029.md index 9fcb36d877..7ffa3f0d96 100644 --- a/md/UBERON/29/UBERON_0002029.md +++ b/md/UBERON/29/UBERON_0002029.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002029 * *Label* = epithelium of gall bladder - * *Definition* = the simple columnar epithelial lining of the gall bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009492] + * *Definition* = the simple columnar epithelial lining of the gall bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009492 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * gall bladder epithelium - * gallbladder epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gallbladder epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * biliary epithelium ## Cross-references @@ -23,7 +23,7 @@ * CALOHA:TS-1304 * FMA:67711 * MA:0001632 - * UMLS:C1180206 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gallbladder_Epithelium] + * UMLS:C1180206 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gallbladder_Epithelium ] * ncithesaurus:Gallbladder_Epithelium ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gallbladder](../../UBERON/10/UBERON_0002110.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002129.md b/md/UBERON/29/UBERON_0002129.md index 5f9b4648b9..fb8dc8b3dd 100644 --- a/md/UBERON/29/UBERON_0002129.md +++ b/md/UBERON/29/UBERON_0002129.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002129 * *Label* = cerebellar cortex - * *Definition* = The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1566] + * *Definition* = The superficial gray matter of the cerebellum. It consists of three main layers, the molecular layer, the Purkinje cell layer and the granule cell layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1566 ] * *Comment* = The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) ## Synonyms - * cell bridges of the ventral striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CB] - * cortex cerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000043] - * cortex cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:647[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cell bridges of the ventral striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CB ] + * cortex cerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000043 ] + * cortex cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:647, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,11 +27,11 @@ * MA:0000199 * MESH:A08.186.211.132.810.428.200.212 * NIF_GrossAnatomy:birnlex_1566 - * NeuroNames:647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1566] + * NeuroNames:647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1566 ] * SCTID:361593004 - * UMLS:C0007759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1566] - * UMLS:C0007759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellar_Cortex] - * UMLS:C1284087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1566] + * UMLS:C0007759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1566 ] + * UMLS:C0007759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellar_Cortex ] + * UMLS:C1284087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1566 ] * VHOG:0001597 * Wikipedia:Cerebellar_cortex * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO][GO:0021695]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002229.md b/md/UBERON/29/UBERON_0002229.md index 9aa508fd52..d9a0c41dec 100644 --- a/md/UBERON/29/UBERON_0002229.md +++ b/md/UBERON/29/UBERON_0002229.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002229 * *Label* = interparietal bone - * *Definition* = the bone of the cranium that lies above and anterior to the occipital bone in some mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000077[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interparietal_bone] + * *Definition* = the bone of the cranium that lies above and anterior to the occipital bone in some mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000077, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interparietal_bone ] * *Comment* = Taxon notes: rarely present in humans[PMID:3654370]. Editor notes: consider splitting classes for inter-parietal and post-parietal. postparietals paired in reptiles, fused in mammals. ## Synonyms - * inter-parietal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19017] - * interparietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:9530] - * inca bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interparietal_bone] - * os interparietale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interparietal_bone] - * ossicle of Goethe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interparietal_bone] - * post-parietal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001327] - * postparietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001327] - * postparietal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001327] + * inter-parietal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19017 ] + * interparietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:9530 ] + * inca bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interparietal_bone ] + * os interparietale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interparietal_bone ] + * ossicle of Goethe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interparietal_bone ] + * post-parietal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001327 ] + * postparietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001327 ] + * postparietal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001327 ] ## Cross-references @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The homologization of cranial bones of actinopterygians with those of sarcopterygians based on the bone names established in human anatomy is favored in order to permit the building of phylogenetic relationship schemes beyond the taxonomic boundaries of osteichthyans (including tetrapods). (...) In actinopterygians, the terms parietal and postparietal bones have to replace the commonly used terms 'frontal' and 'parietal' bones for the two paired bones on the skull roof.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002329.md b/md/UBERON/29/UBERON_0002329.md index 0cd1109d15..34ee8a5cf8 100644 --- a/md/UBERON/29/UBERON_0002329.md +++ b/md/UBERON/29/UBERON_0002329.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002329 * *Label* = somite - * *Definition* = Somites are spheres of epithelial cells that form sequentially along the anteriorposterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Somite[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/j.1439-0426.2012.01987.x] + * *Definition* = Somites are spheres of epithelial cells that form sequentially along the anteriorposterior axis of the embryo through mesenchymal to epithelial transition of the presomitic mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Somite, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/j.1439-0426.2012.01987.x ] * *Comment* = Editor notes: currently classified as an epithelial vesicle, consistent with EHDAA2 and UBERONREF:0000002. Consider making "somitic mesoderm" a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk // When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248] ## Synonyms - * mesodermal cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001756] - * epithelial somite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] - * somites [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mesodermal cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001756 ] + * epithelial somite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] + * somites [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * somitic mesoderm - * somitus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Somite[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * somitus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Somite, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A16.254.425.660.750 * MIAA:0000068 * TAO:0000155 - * UMLS:C0376449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Somite] + * UMLS:C0376449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Somite ] * VHOG:0000191 * Wikipedia:Somite * XAO:0000058 @@ -66,8 +66,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) cephalocordates and craniates belong to a group known as Somitichordata. Somitichordate synapomorphies include (1) somites (...) (reference 1); The idea that the last common ancestor of bilaterian animals (Urbilateria) was segmented has been raised recently on evidence coming from comparative molecular embryology (reference 2).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = somitic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002429.md b/md/UBERON/29/UBERON_0002429.md index 57081eb9d4..3391175132 100644 --- a/md/UBERON/29/UBERON_0002429.md +++ b/md/UBERON/29/UBERON_0002429.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002429 * *Label* = cervical lymph node - * *Definition* = Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_lymph_node] + * *Definition* = Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_lymph_node ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:61213 * MA:0000736 * SCTID:181757009 - * UMLS:C0588054 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Lymph_Node] + * UMLS:C0588054 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Lymph_Node ] * Wikipedia:Cervical_lymph_node * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Lymph_node_regions.jpg/200px-Lymph_node_regions.jpg * ncithesaurus:Cervical_Lymph_Node @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002529.md b/md/UBERON/29/UBERON_0002529.md index 15ec3bc8b3..ef94ad1498 100644 --- a/md/UBERON/29/UBERON_0002529.md +++ b/md/UBERON/29/UBERON_0002529.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002529 * *Label* = limb segment - * *Definition* = A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z ## Synonyms - * free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:241863] + * free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:241863 ] * limb region * region of limb * segment of limb @@ -19,7 +19,7 @@ * FMA:241863 * MA:0002889 - * UMLS:C1268195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extremity_Part] + * UMLS:C1268195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extremity_Part ] * ncithesaurus:Extremity_Part ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) and [subdivision of organism along appendicular axis](../../UBERON/58/UBERON_0010758.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002629.md b/md/UBERON/29/UBERON_0002629.md index 73047cec18..43ee8110f9 100644 --- a/md/UBERON/29/UBERON_0002629.md +++ b/md/UBERON/29/UBERON_0002629.md @@ -6,8 +6,8 @@ ## Synonyms - * pars triangularis gyri frontalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1216] - * inferior frontal gyrus, triangular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IFGTr] + * pars triangularis gyri frontalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1216 ] + * inferior frontal gyrus, triangular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IFGTr ] ## Cross-references @@ -15,9 +15,9 @@ * BAMS:TrIFG * FMA:61980 * NIF_GrossAnatomy:birnlex_1216 - * NeuroNames:86 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1216] - * UMLS:C0262350 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1216] - * UMLS:C0262350 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus] + * NeuroNames:86 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1216 ] + * UMLS:C0262350 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1216 ] + * UMLS:C0262350 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus ] * ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002729.md b/md/UBERON/29/UBERON_0002729.md index 67f5af67e5..8da0aa6a6e 100644 --- a/md/UBERON/29/UBERON_0002729.md +++ b/md/UBERON/29/UBERON_0002729.md @@ -6,12 +6,12 @@ ## Synonyms - * claustrum diffusa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61869] - * claustrum parvum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61869] - * ventral claustrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61869] - * ventral portion of claustrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61869] - * area claustralis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:251[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * claustral amygdalar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:251] + * claustrum diffusa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61869 ] + * claustrum parvum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61869 ] + * ventral claustrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61869 ] + * ventral portion of claustrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61869 ] + * area claustralis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:251, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * claustral amygdalar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:251 ] ## Cross-references @@ -19,8 +19,8 @@ * BAMS:VCl * FMA:61869 * NIF_GrossAnatomy:birnlex_1515 - * NeuroNames:251 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1515] - * UMLS:C0262214 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1515] + * NeuroNames:251 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1515 ] + * UMLS:C0262214 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1515 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002829.md b/md/UBERON/29/UBERON_0002829.md index 27e25461eb..8c9932bec3 100644 --- a/md/UBERON/29/UBERON_0002829.md +++ b/md/UBERON/29/UBERON_0002829.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002829 * *Label* = dorsal cochlear nucleus - * *Definition* = The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_cochlear_nucleus] + * *Definition* = The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_cochlear_nucleus ] ## Synonyms - * dorsal cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54624] - * dorsal division of cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54624] - * posterior cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54624] + * dorsal cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54624 ] + * dorsal division of cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54624 ] + * posterior cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54624 ] * tuberculum acousticum - * DCo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2569[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsal coclear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DCO] - * nucleus cochlearis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:721[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cochlearis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_cochlear_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * DCo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2569, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsal coclear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DCO ] + * nucleus cochlearis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:721, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cochlearis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_cochlear_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,11 +25,11 @@ * BM:Me-CD * FMA:54624 * NIF_GrossAnatomy:birnlex_2569 - * NeuroNames:721 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2569] + * NeuroNames:721 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2569 ] * SCTID:280179000 - * UMLS:C0175499 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2569] - * UMLS:C0175499 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Cochlear_Nucleus] - * UMLS:C1281210 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2569] + * UMLS:C0175499 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2569 ] + * UMLS:C0175499 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Cochlear_Nucleus ] + * UMLS:C1281210 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2569 ] * Wikipedia:Dorsal_cochlear_nucleus * http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0002929.md b/md/UBERON/29/UBERON_0002929.md index 2a72dfe987..faf923dc0f 100644 --- a/md/UBERON/29/UBERON_0002929.md +++ b/md/UBERON/29/UBERON_0002929.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003029.md b/md/UBERON/29/UBERON_0003029.md index 0784f566a3..0969fa6c2b 100644 --- a/md/UBERON/29/UBERON_0003029.md +++ b/md/UBERON/29/UBERON_0003029.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003029 * *Label* = stria terminalis - * *Definition* = The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stria_terminalis] + * *Definition* = The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stria_terminalis ] ## Synonyms - * semicircular stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61974] - * terminal stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_stria] - * Tarins tenia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004616] - * fibrae striae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:286[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fovilles fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004616] - * stria semicircularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:286[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stria terminalis (Wenzel-Wenzel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:286] - * stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stria_terminalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tenia semicircularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004616] + * semicircular stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61974 ] + * terminal stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_stria ] + * Tarins tenia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004616 ] + * fibrae striae terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:286, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fovilles fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004616 ] + * stria semicircularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:286, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stria terminalis (Wenzel-Wenzel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:286 ] + * stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stria_terminalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tenia semicircularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004616 ] ## Cross-references @@ -26,8 +26,8 @@ * BTO:0004616 * FMA:61974 * NIF_GrossAnatomy:birnlex_937 - * NeuroNames:286 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_937] - * UMLS:C0175243 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_937] + * NeuroNames:286 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_937 ] + * UMLS:C0175243 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_937 ] * Wikipedia:Stria_terminalis * http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray683.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray683.png/200px-Gray683.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003129.md b/md/UBERON/29/UBERON_0003129.md index d208cda3ca..fb8e350054 100644 --- a/md/UBERON/29/UBERON_0003129.md +++ b/md/UBERON/29/UBERON_0003129.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003129 * *Label* = skull - * *Definition* = Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skull[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376] + * *Definition* = Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skull, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376 ] * *Comment* = In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton ## Synonyms @@ -22,7 +22,7 @@ * MESH:A02.835.232.781 * OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA * SCTID:110530005 - * UMLS:C0037303 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skull] + * UMLS:C0037303 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skull ] * Wikipedia:Skull * WikipediaCategory:Skull * galen:Skull @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003229.md b/md/UBERON/29/UBERON_0003229.md index 93cac33c04..54cd93bc0b 100644 --- a/md/UBERON/29/UBERON_0003229.md +++ b/md/UBERON/29/UBERON_0003229.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003229 * *Label* = epithelium of elbow - * *Definition* = An epithelium that is part of a elbow [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a elbow [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cubital region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cubital region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elbow epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elbow epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cubital region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cubital region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elbow epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elbow epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [elbow](../../UBERON/61/UBERON_0001461.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003329.md b/md/UBERON/29/UBERON_0003329.md index 1fa88006f3..8d339b437d 100644 --- a/md/UBERON/29/UBERON_0003329.md +++ b/md/UBERON/29/UBERON_0003329.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003329 * *Label* = submucosa of anal canal - * *Definition* = A submucosa that is part of an anal canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of an anal canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anal canal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal viewed anatomically submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical anal canal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of anal canal viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of anatomical anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anal canal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal viewed anatomically submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical anal canal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of anal canal viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of anatomical anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal canal](../../UBERON/59/UBERON_0000159.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003429.md b/md/UBERON/29/UBERON_0003429.md index 2a943f717a..9aa31867a7 100644 --- a/md/UBERON/29/UBERON_0003429.md +++ b/md/UBERON/29/UBERON_0003429.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003429 * *Label* = abdomen nerve - * *Definition* = A nerve that is part of an abdomen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of an abdomen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003529.md b/md/UBERON/29/UBERON_0003529.md index 8c78f815ef..c98482f89e 100644 --- a/md/UBERON/29/UBERON_0003529.md +++ b/md/UBERON/29/UBERON_0003529.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003529 * *Label* = respiratory system lymphatic vessel endothelium - * *Definition* = An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An lymphatic vessel endothelium that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius endothelium of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius lymph vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius lymphatic vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of lymph vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of lymph vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system lymph vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system lymphatic vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius endothelium of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius lymph vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius lymphatic vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of lymph vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of lymph vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system lymph vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system lymphatic vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel endothelium](../../UBERON/42/UBERON_0002042.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003729.md b/md/UBERON/29/UBERON_0003729.md index 4f59ba93ee..e0216f0cc8 100644 --- a/md/UBERON/29/UBERON_0003729.md +++ b/md/UBERON/29/UBERON_0003729.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003729 * *Label* = mouth mucosa - * *Definition* = A mucous membrane that lines the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A mucous membrane that lines the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Usage notes: this is defined as any mucous membrane of the mouth - including palate, lips, uvula, etc. ncit split mouth/oral mucosa into lip and buccal. In future we may split into masticatory/keratinized (gingiva + hard palate) vs lining/non-keratinized (lips, cheeks, floor of mouth, soft palate). FMA distinguishes between mucosa of mouth and region of mouth (the latter including the buccal mucosa) ## Synonyms - * mouth mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59660] - * mouth mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * mouth organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * mucosa of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * mucous membrane of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59660] + * mouth mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59660 ] + * mouth mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * mouth organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * mucosa of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * mucous membrane of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59660 ] * oral mucous membrane - * oral part of viscerocranial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59660] - * tunica mucosa oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59660[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * buccal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:951] - * mucosal lining of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002794] - * oral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:951] - * tunica mucosa oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oral_mucosa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * oral part of viscerocranial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59660 ] + * tunica mucosa oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59660, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * buccal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:951 ] + * mucosal lining of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002794 ] + * oral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:951 ] + * tunica mucosa oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oral_mucosa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * GAID:951 * MA:0002794 * MESH:A10.615.550.599 - * UMLS:C0026639 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oral_Mucosa] + * UMLS:C0026639 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oral_Mucosa ] * Wikipedia:Oral_mucosa * ncithesaurus:Oral_Mucosa @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mouth](../../UBERON/65/UBERON_0000165.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized[Wikipedia:Oral_mucosa]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003829.md b/md/UBERON/29/UBERON_0003829.md index 9b0599933a..db92cae682 100644 --- a/md/UBERON/29/UBERON_0003829.md +++ b/md/UBERON/29/UBERON_0003829.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003829 * *Label* = urethra muscle - * *Definition* = A muscle organ that is part of a urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: FMA class may not be equivalent ## Synonyms - * muscle organ of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscular coat of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76909] - * muscular layer of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76909] - * urethra muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle layer of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76909] - * urethral muscle layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002649] + * muscle organ of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscular coat of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76909 ] + * muscular layer of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76909 ] + * urethra muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle layer of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76909 ] + * urethral muscle layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002649 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0003929.md b/md/UBERON/29/UBERON_0003929.md index 90c4cfce5f..34657e1d9d 100644 --- a/md/UBERON/29/UBERON_0003929.md +++ b/md/UBERON/29/UBERON_0003929.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003929 * *Label* = gut epithelium - * *Definition* = An epithelium that is part of a digestive tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a digestive tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive tract epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive tract epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of digestive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lower gastrointestinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of digestive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lower gastrointestinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gut epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower gastrointestinal tract epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower gastrointestinal tract epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive tract epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive tract epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of digestive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lower gastrointestinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of digestive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lower gastrointestinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gut epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower gastrointestinal tract epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower gastrointestinal tract epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,7 +25,7 @@ * EHDAA2:0004567 * EMAPA:32928 * TAO:0005123 - * UMLS:C0836205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gut_Epithelium] + * UMLS:C0836205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gut_Epithelium ] * XAO:0003200 * ZFA:0005123 * ncithesaurus:Gut_Epithelium @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium lining the lumen of the gut.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004029.md b/md/UBERON/29/UBERON_0004029.md index 1313d70104..61a71ba22c 100644 --- a/md/UBERON/29/UBERON_0004029.md +++ b/md/UBERON/29/UBERON_0004029.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004029 * *Label* = canal of Schlemm - * *Definition* = the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005204[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Schlemm's_canal] + * *Definition* = the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005204, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Schlemm's_canal ] ## Synonyms * Schlemm's canal - * scleral sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:51873] - * scleral venous sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:51873] - * sinus venosus of sclera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:51873] - * sinus venosus sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Schlemm's_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * scleral sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:51873 ] + * scleral venous sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:51873 ] + * sinus venosus of sclera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:51873 ] + * sinus venosus sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Schlemm's_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:51873 * SCTID:280605006 - * UMLS:C0229108 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Canal_of_Schlemm] + * UMLS:C0229108 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Canal_of_Schlemm ] * Wikipedia:Schlemm's_canal * ncithesaurus:Canal_of_Schlemm @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004129.md b/md/UBERON/29/UBERON_0004129.md index 0f93dc14ff..22b20d6af2 100644 --- a/md/UBERON/29/UBERON_0004129.md +++ b/md/UBERON/29/UBERON_0004129.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004129 * *Label* = growth plate cartilage - * *Definition* = cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003417] + * *Definition* = cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003417 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004229.md b/md/UBERON/29/UBERON_0004229.md index c6efd7bfa0..d7ce75b83c 100644 --- a/md/UBERON/29/UBERON_0004229.md +++ b/md/UBERON/29/UBERON_0004229.md @@ -3,58 +3,58 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004229 * *Label* = urinary bladder trigone smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Lieutaud's trigone involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud's trigone non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud's trigone smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieutaud's trigone smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of Lieutaud's trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of Lieutaud's trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of Lieutaud's trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of Lieutaud's trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of trigone of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001700] - * urinary bladder trigone non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Lieutaud's trigone involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud's trigone non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud's trigone smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieutaud's trigone smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of Lieutaud's trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of Lieutaud's trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of Lieutaud's trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of Lieutaud's trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of trigone of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001700 ] + * urinary bladder trigone non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -70,15 +70,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trigone of urinary bladder](../../UBERON/57/UBERON_0001257.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004329.md b/md/UBERON/29/UBERON_0004329.md index a6fdbb36e4..0e4e49f1c5 100644 --- a/md/UBERON/29/UBERON_0004329.md +++ b/md/UBERON/29/UBERON_0004329.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004329 * *Label* = proximal phalanx of manual digit 3 - * *Definition* = A proximal phalanx that is part of a hand digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a hand digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd digit of hand proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3rd finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 3rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 3rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23920] - * proximal phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23920] - * proximal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third proximal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23920] + * 3rd digit of hand proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3rd finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 3rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 3rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23920 ] + * proximal phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23920 ] + * proximal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third proximal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23920 ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004429.md b/md/UBERON/29/UBERON_0004429.md index 894f884d3f..558e272346 100644 --- a/md/UBERON/29/UBERON_0004429.md +++ b/md/UBERON/29/UBERON_0004429.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004429 * *Label* = proximal epiphysis of third metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of third metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42965] - * proximal end of third metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42965] + * base of third metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42965 ] + * proximal end of third metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42965 ] * proximal epiphysis of metatarsal 3 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 3](../../UBERON/52/UBERON_0003652.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004529.md b/md/UBERON/29/UBERON_0004529.md index 8fdb57daf4..4adc323634 100644 --- a/md/UBERON/29/UBERON_0004529.md +++ b/md/UBERON/29/UBERON_0004529.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004529 * *Label* = anatomical projection - * *Definition* = a projection or outgrowth of tissue from a larger body or organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Process_(anatomy)] + * *Definition* = a projection or outgrowth of tissue from a larger body or organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Process_(anatomy) ] * *Comment* = Editor notes: should be declared sijoint from organ, but in some ontologies (e.g. ZFA), structures such as neural spines are classified as bones (and hence organs) ## Synonyms * projection * anatomical process - * process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * flange [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * flanges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lamella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * lamellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] + * process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * flange [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * flanges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lamella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * lamellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] * organ process * process of organ - * processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * projection [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * projections [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * ridges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * shelf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180] - * shelves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * projection [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * projections [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * ridges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * shelf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180 ] + * shelves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * anatomical protrusion * protrusion @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004629.md b/md/UBERON/29/UBERON_0004629.md index 690a8ec8a0..c5b842a580 100644 --- a/md/UBERON/29/UBERON_0004629.md +++ b/md/UBERON/29/UBERON_0004629.md @@ -7,9 +7,9 @@ ## Synonyms - * Fourth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9248] - * T4 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9248] - * fourth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9248] + * Fourth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9248 ] + * T4 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9248 ] + * fourth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9248 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9248 * MA:0001441 * SCTID:181831002 - * UMLS:C0459951 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T4_Vertebra] + * UMLS:C0459951 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T4_Vertebra ] * ncithesaurus:T4_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004729.md b/md/UBERON/29/UBERON_0004729.md index f43ffeafee..ec272965f4 100644 --- a/md/UBERON/29/UBERON_0004729.md +++ b/md/UBERON/29/UBERON_0004729.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004729 * *Label* = nematode larval stage - * *Definition* = Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002119] + * *Definition* = Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002119 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004829.md b/md/UBERON/29/UBERON_0004829.md index b95d808df6..c89b9d0b42 100644 --- a/md/UBERON/29/UBERON_0004829.md +++ b/md/UBERON/29/UBERON_0004829.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004829 * *Label* = urethra skeletal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of a urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * skeletal muscle of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethra skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urethral skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001690] + * skeletal muscle of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethra skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urethral skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001690 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0004929.md b/md/UBERON/29/UBERON_0004929.md index 791e380280..0beab6b76f 100644 --- a/md/UBERON/29/UBERON_0004929.md +++ b/md/UBERON/29/UBERON_0004929.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004929 * *Label* = submucosa of ascending colon - * *Definition* = A submucosa that is part of an ascending colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of an ascending colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ascending colon submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ascending colon submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ascending colon](../../UBERON/56/UBERON_0001156.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005029.md b/md/UBERON/29/UBERON_0005029.md index 188097b560..fd85973b8c 100644 --- a/md/UBERON/29/UBERON_0005029.md +++ b/md/UBERON/29/UBERON_0005029.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005029 * *Label* = mucosa of lacrimal canaliculus - * *Definition* = A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a lacrimal canaliculus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lacrimal canalicular mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85366] - * lacrimal canaliculus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal canaliculus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal canaliculus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lacrimal canaliculus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of lacrimal canaliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of lacrimal canaliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of lacrimal canaliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lacrimal canalicular mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85366 ] + * lacrimal canaliculus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal canaliculus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal canaliculus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lacrimal canaliculus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of lacrimal canaliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of lacrimal canaliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of lacrimal canaliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lacrimal canaliculus](../../UBERON/70/UBERON_0001770.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005129.md b/md/UBERON/29/UBERON_0005129.md index 4c85de9e43..2d00cabef2 100644 --- a/md/UBERON/29/UBERON_0005129.md +++ b/md/UBERON/29/UBERON_0005129.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005129 * *Label* = metanephric distal tubule - * *Definition* = The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072235] + * *Definition* = The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072235 ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal tubule](../../UBERON/35/UBERON_0004135.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005150 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005229.md b/md/UBERON/29/UBERON_0005229.md index 67a24e9e26..483de816bf 100644 --- a/md/UBERON/29/UBERON_0005229.md +++ b/md/UBERON/29/UBERON_0005229.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005229 * *Label* = lower leg epithelium - * *Definition* = An epithelium that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005329.md b/md/UBERON/29/UBERON_0005329.md index 9b1cd3a9eb..69543e27b6 100644 --- a/md/UBERON/29/UBERON_0005329.md +++ b/md/UBERON/29/UBERON_0005329.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005329 * *Label* = mesonephric nephron tubule - * *Definition* = A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061240] + * *Definition* = A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061240 ] ## Synonyms - * mesonephric renal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * mesonephric renal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005429.md b/md/UBERON/29/UBERON_0005429.md index 262e121da1..8c8964f9ff 100644 --- a/md/UBERON/29/UBERON_0005429.md +++ b/md/UBERON/29/UBERON_0005429.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005429 * *Label* = dorsal pancreatic duct - * *Definition* = Most people have just one pancreatic duct. However, some have an additional accessory pancreatic duct also called the Duct of Santorini, which connects straight to the duodenum at the minor duodenal papilla. Both these ducts connect to the second part (the vertical one) of the duodenum. However, the Duct of Santorini, which bypasses the Ampulla of Vater, is non-functional whereas the Duct of Wirsung is functional and carries the digestive enzymes released by the pancreas. It is named for Giovanni Domenico Santorini. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_pancreatic_duct] + * *Definition* = Most people have just one pancreatic duct. However, some have an additional accessory pancreatic duct also called the Duct of Santorini, which connects straight to the duodenum at the minor duodenal papilla. Both these ducts connect to the second part (the vertical one) of the duodenum. However, the Duct of Santorini, which bypasses the Ampulla of Vater, is non-functional whereas the Duct of Wirsung is functional and carries the digestive enzymes released by the pancreas. It is named for Giovanni Domenico Santorini. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_pancreatic_duct ] ## Synonyms - * Santorini's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14534] - * accessory pancreatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000125] - * duct of Santorini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14534[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_pancreatic_duct] - * accessory pancreatic duct of santorini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_pancreatic_duct] - * ductus pancreaticus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_pancreatic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Santorini's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14534 ] + * accessory pancreatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000125 ] + * duct of Santorini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14534, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_pancreatic_duct ] + * accessory pancreatic duct of santorini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_pancreatic_duct ] + * ductus pancreaticus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_pancreatic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ductus pancreatis dorsalis - * pancreatic duct of santorini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_pancreatic_duct] + * pancreatic duct of santorini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_pancreatic_duct ] ## Cross-references @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005603 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005629.md b/md/UBERON/29/UBERON_0005629.md index 80e6f9d5b2..bff7832706 100644 --- a/md/UBERON/29/UBERON_0005629.md +++ b/md/UBERON/29/UBERON_0005629.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005629 * *Label* = vascular plexus - * *Definition* = a vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=70052] + * *Definition* = a vascular network formed by frequent anastomoses between the blood vessels (arteries or veins) of a part. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=70052 ] ## Synonyms - * plexus vasculosus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus vasculosus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In a vascular plexus, the contents of the vessels mix. A plexus allows blood to flow via multiple routes. If one branch of the plexus is obstructed, the blood may flow via the open branches[Wikipedia:Plexus#Circulatory_system]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0005729.md b/md/UBERON/29/UBERON_0005729.md index 0d3dd7cbbe..60ed9b1659 100644 --- a/md/UBERON/29/UBERON_0005729.md +++ b/md/UBERON/29/UBERON_0005729.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005729 * *Label* = pectoral appendage field - * *Definition* = A limb/fin field that has_potential_to_develop_into a pectoral appendage bud mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb/fin field that has_potential_to_develop_into a pectoral appendage bud mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * pectoral appendage field of lateral plate mesoderm - * pectoral fin field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001453[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pectoral fin field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001453, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pectoral appendage bud mesenchyme](../../UBERON/13/UBERON_0003413.md) and [paired limb/fin field](../../UBERON/32/UBERON_0005732.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Embryonic region that develops into the pectoral fin bud.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0006029.md b/md/UBERON/29/UBERON_0006029.md index 92821ed485..51e1bf5226 100644 --- a/md/UBERON/29/UBERON_0006029.md +++ b/md/UBERON/29/UBERON_0006029.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006029 * *Label* = interdigital region between manual digits 2 and 3 - * *Definition* = An interdigital region that adjacent_to a manual digit 2 and adjacent_to a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a manual digit 2 and adjacent_to a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0006329.md b/md/UBERON/29/UBERON_0006329.md index d20cecc27d..a34621ac42 100644 --- a/md/UBERON/29/UBERON_0006329.md +++ b/md/UBERON/29/UBERON_0006329.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006329 * *Label* = superior pharyngeal constrictor - * *Definition* = The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pharyngeal_constrictor_muscle] + * *Definition* = The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pharyngeal_constrictor_muscle ] ## Synonyms - * constrictor muscle of pharynx superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46621] - * musculus constrictor pharyngis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46621[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46621] - * superior constrictor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Superior_Constrictor_Muscle] - * superior constrictor of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46621] - * superior constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46621] - * musculus constrictor pharyngis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pharyngeal_constrictor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * constrictor muscle of pharynx superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46621 ] + * musculus constrictor pharyngis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46621, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46621 ] + * superior constrictor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Superior_Constrictor_Muscle ] + * superior constrictor of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46621 ] + * superior constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46621 ] + * musculus constrictor pharyngis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pharyngeal_constrictor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:46621 * MA:0002280 * SCTID:244800006 - * UMLS:C1515063 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Constrictor_Muscle] + * UMLS:C1515063 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Constrictor_Muscle ] * Wikipedia:Superior_pharyngeal_constrictor_muscle * http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png * ncithesaurus:Superior_Constrictor_Muscle @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The superior constrictor is a muscle that is an integral part of the pharyngeal tube that is attached to the mandible, pterygomandibular raphe, basioccipital bone, pterygoid process and midline raphe and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0006729.md b/md/UBERON/29/UBERON_0006729.md index 994ace4e31..e820cf20d8 100644 --- a/md/UBERON/29/UBERON_0006729.md +++ b/md/UBERON/29/UBERON_0006729.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006729 * *Label* = liver perisinusoidal space - * *Definition* = The space of Disse (or perisinusoidal space) is a location in the liver between a hepatocyte and a sinusoid. It contains the blood plasma. Microvilli of hepatocytes extend into this space, allowing proteins and other plasma components from the sinusoids to be taken up by the hepatocytes. This space may be obliterated in liver disease, leading to decreased uptake by hepatocytes of nutrients and wastes (like bilirubin, for example). The Space of Disse also contains Ito cells, also called hepatic stellate cells, which store fat or fat soluble vitamins. Excessive intake of fat soluble vitamins can lead to pathologically enlarged Ito cells, which can form collagen and lead to fibrosis and cirrhosis. The Space of Disse was named after German anatomist, Joseph Disse (1852b1912). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Space_of_Disse] + * *Definition* = The space of Disse (or perisinusoidal space) is a location in the liver between a hepatocyte and a sinusoid. It contains the blood plasma. Microvilli of hepatocytes extend into this space, allowing proteins and other plasma components from the sinusoids to be taken up by the hepatocytes. This space may be obliterated in liver disease, leading to decreased uptake by hepatocytes of nutrients and wastes (like bilirubin, for example). The Space of Disse also contains Ito cells, also called hepatic stellate cells, which store fat or fat soluble vitamins. Excessive intake of fat soluble vitamins can lead to pathologically enlarged Ito cells, which can form collagen and lead to fibrosis and cirrhosis. The Space of Disse was named after German anatomist, Joseph Disse (1852b1912). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Space_of_Disse ] ## Synonyms - * Disse's space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63162] - * hepatic perisinusoidal space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63162] - * perisinusoidal space of Disse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63162] - * space of Disse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63162] - * spatium perisinusoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Space_of_Disse[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * perisinusoidal space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Space_of_Disse] + * Disse's space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63162 ] + * hepatic perisinusoidal space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63162 ] + * perisinusoidal space of Disse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63162 ] + * space of Disse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63162 ] + * spatium perisinusoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Space_of_Disse, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * perisinusoidal space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Space_of_Disse ] ## Cross-references * FMA:63162 * MA:0002497 * SCTID:17779003 - * UMLS:C0227530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perisinusoidal_Space] + * UMLS:C0227530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perisinusoidal_Space ] * Wikipedia:Space_of_Disse * ncithesaurus:Perisinusoidal_Space @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0006829.md b/md/UBERON/29/UBERON_0006829.md index 8d075878c7..78ea128758 100644 --- a/md/UBERON/29/UBERON_0006829.md +++ b/md/UBERON/29/UBERON_0006829.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006829 * *Label* = remnant of left anterior vena cava - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Persistent_left_superior_vena_cava] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Persistent_left_superior_vena_cava ] * *Comment* = The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0006929.md b/md/UBERON/29/UBERON_0006929.md index 00c0d091dc..7d4aef5463 100644 --- a/md/UBERON/29/UBERON_0006929.md +++ b/md/UBERON/29/UBERON_0006929.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006929 * *Label* = glandular columnar epithelium - * *Definition* = Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64800] + * *Definition* = Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64800 ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * FMA:64800 - * UMLS:C0225337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Columnar_Epithelium] + * UMLS:C0225337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Columnar_Epithelium ] * ncithesaurus:Columnar_Epithelium ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007029.md b/md/UBERON/29/UBERON_0007029.md index 2e65728826..bc78a87ee8 100644 --- a/md/UBERON/29/UBERON_0007029.md +++ b/md/UBERON/29/UBERON_0007029.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007029 * *Label* = external covering of organism - * *Definition* = The collection of structures that form the extenal covering of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000154] + * *Definition* = The collection of structures that form the extenal covering of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000154 ] ## Synonyms * body surface - * organism surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003154] - * surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000118] + * organism surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003154 ] + * surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000118 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007329.md b/md/UBERON/29/UBERON_0007329.md index 7e0fb43bd1..875fdb9090 100644 --- a/md/UBERON/29/UBERON_0007329.md +++ b/md/UBERON/29/UBERON_0007329.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007329 * *Label* = pancreatic duct - * *Definition* = A duct that is part of the pancreas and connected to the duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A duct that is part of the pancreas and connected to the duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. AO notes: in EHDAA2, the dorsal and ventral ducts are classified as epithelial sacs - review after overhaul of duct/epithelia terms ## Synonyms - * duct of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * pancreas duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * ductus pancreaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * duct of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * pancreas duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * ductus pancreaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Duct connecting the pancreas with the intestine. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007529.md b/md/UBERON/29/UBERON_0007529.md index 5e513ab134..73d22ceee6 100644 --- a/md/UBERON/29/UBERON_0007529.md +++ b/md/UBERON/29/UBERON_0007529.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007529 * *Label* = loose mesenchyme tissue - * *Definition* = Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003151 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007629.md b/md/UBERON/29/UBERON_0007629.md index 701045af18..101881b786 100644 --- a/md/UBERON/29/UBERON_0007629.md +++ b/md/UBERON/29/UBERON_0007629.md @@ -6,7 +6,7 @@ ## Synonyms - * medial septum complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MSX] + * medial septum complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MSX ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007729.md b/md/UBERON/29/UBERON_0007729.md index fe3a41cee5..753be9a6ac 100644 --- a/md/UBERON/29/UBERON_0007729.md +++ b/md/UBERON/29/UBERON_0007729.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007729 * *Label* = interphalangeal joint of manual digit 2 - * *Definition* = An interphalangeal joint of manus that is part of a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of manus that is part of a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35397] - * interphalangeal joint of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35397] - * interphalangeal joint of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35397[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35397 ] + * interphalangeal joint of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35397 ] + * interphalangeal joint of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35397, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of manus](../../UBERON/22/UBERON_0007722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0007829.md b/md/UBERON/29/UBERON_0007829.md index 1d34861bc4..4d1eee7720 100644 --- a/md/UBERON/29/UBERON_0007829.md +++ b/md/UBERON/29/UBERON_0007829.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007829 * *Label* = pectoral girdle bone - * *Definition* = A bone that is part of a pectoral girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a pectoral girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0008229.md b/md/UBERON/29/UBERON_0008229.md index 3eae88666b..0337fc5524 100644 --- a/md/UBERON/29/UBERON_0008229.md +++ b/md/UBERON/29/UBERON_0008229.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008229 * *Label* = craniocervical region musculature - * *Definition* = Musculature system of the pharyngeal and head regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000328[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Musculature system of the pharyngeal and head regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000328, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms - * head or neck muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000571] - * head muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000328] - * head or neck muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000571] + * head or neck muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000571 ] + * head muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000328 ] + * head or neck muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000571 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0008429.md b/md/UBERON/29/UBERON_0008429.md index 3371c9bbb3..890912726e 100644 --- a/md/UBERON/29/UBERON_0008429.md +++ b/md/UBERON/29/UBERON_0008429.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008429 * *Label* = cervical vertebral foramen - * *Definition* = A vertebral foramen that is part of a cervical vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vertebral foramen that is part of a cervical vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) and [vertebral foramen](../../UBERON/31/UBERON_0001131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0008529.md b/md/UBERON/29/UBERON_0008529.md index 5eae3fe381..46f9511022 100644 --- a/md/UBERON/29/UBERON_0008529.md +++ b/md/UBERON/29/UBERON_0008529.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008529 * *Label* = piriformis muscle - * *Definition* = The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriformis_muscle] + * *Definition* = The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriformis_muscle ] ## Synonyms - * m.piriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19082] - * piriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19082] - * musculus piriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriformis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus piriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriformis_muscle] - * piriform muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriformis_muscle] - * piriformis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Piriformis_muscle] + * m.piriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19082 ] + * piriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19082 ] + * musculus piriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriformis_muscle ] + * musculus piriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriformis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * piriform muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriformis_muscle ] + * piriformis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Piriformis_muscle ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0008829.md b/md/UBERON/29/UBERON_0008829.md index fd6f4833b6..e0dc36dd44 100644 --- a/md/UBERON/29/UBERON_0008829.md +++ b/md/UBERON/29/UBERON_0008829.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008829 * *Label* = cerebellum external granule cell layer - * *Definition* = transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]. The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000874[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anatomy_of_the_cerebellum#Development] + * *Definition* = transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]. The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000874, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anatomy_of_the_cerebellum#Development ] ## Synonyms - * outer granular layer of cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_797] + * outer granular layer of cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_797 ] * external granule layer - * granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000872] - * granule layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000872] + * granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000872 ] + * granule layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000872 ] ## Cross-references * MA:0000994 * NIF_GrossAnatomy:birnlex_797 - * UMLS:C0228473 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_797] - * UMLS:C1289480 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_797] + * UMLS:C0228473 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_797 ] + * UMLS:C1289480 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_797 ] * Wikipedia:Anatomy_of_the_cerebellum#Development ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The transient layer of the cerebellar cortex present during development which is composed of the dividing and migrating granule cell[MGI:tc] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008829 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0008929.md b/md/UBERON/29/UBERON_0008929.md index eeb3b2942c..286168b7e1 100644 --- a/md/UBERON/29/UBERON_0008929.md +++ b/md/UBERON/29/UBERON_0008929.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008929 * *Label* = sublaminar layers S4 or S5 - * *Definition* = One of sublaminar layers S4 or S5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = One of sublaminar layers S4 or S5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md)or[sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0009029.md b/md/UBERON/29/UBERON_0009029.md index 3322eb9806..49bed3a927 100644 --- a/md/UBERON/29/UBERON_0009029.md +++ b/md/UBERON/29/UBERON_0009029.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0009129.md b/md/UBERON/29/UBERON_0009129.md index 206a6c385e..fbf8a3cca4 100644 --- a/md/UBERON/29/UBERON_0009129.md +++ b/md/UBERON/29/UBERON_0009129.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009129 * *Label* = right atrium endocardium - * *Definition* = An endocardium that is part of a right atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocardium that is part of a right atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endocardium of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7281] - * right atrial endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7281] - * right atrium endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001228] + * endocardium of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7281 ] + * right atrial endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7281 ] + * right atrium endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001228 ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0009629.md b/md/UBERON/29/UBERON_0009629.md index 6e96f7de04..864cec4d96 100644 --- a/md/UBERON/29/UBERON_0009629.md +++ b/md/UBERON/29/UBERON_0009629.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009629 * *Label* = coccygeal nerve - * *Definition* = The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coccygeal_nerve] + * *Definition* = The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coccygeal_nerve ] ## Synonyms - * coccygeal spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5863] - * nervus coccygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coccygeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coccygeal spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5863 ] + * nervus coccygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coccygeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:5863 * SCTID:287477006 - * UMLS:C0228967 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coccygeal_Nerve] + * UMLS:C0228967 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coccygeal_Nerve ] * Wikipedia:Coccygeal_nerve * http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png * ncithesaurus:Coccygeal_Nerve @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0010029.md b/md/UBERON/29/UBERON_0010029.md index 83a3717d5f..b6afedf87e 100644 --- a/md/UBERON/29/UBERON_0010029.md +++ b/md/UBERON/29/UBERON_0010029.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0010129.md b/md/UBERON/29/UBERON_0010129.md index 0f942e55cc..e0ea340778 100644 --- a/md/UBERON/29/UBERON_0010129.md +++ b/md/UBERON/29/UBERON_0010129.md @@ -7,7 +7,7 @@ ## Synonyms - * femoral cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17742] + * femoral cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17742 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [femur endochondral element](../../UBERON/52/UBERON_0015052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0010229.md b/md/UBERON/29/UBERON_0010229.md index 58514fa16f..2db781ef95 100644 --- a/md/UBERON/29/UBERON_0010229.md +++ b/md/UBERON/29/UBERON_0010229.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010229 * *Label* = ruminant esophageal groove - * *Definition* = A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.extension.org/pages/16468/esophageal-groove] + * *Definition* = A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.extension.org/pages/16468/esophageal-groove ] * *Comment* = The formation of the esophageal groove is controlled by neural stimulation from suckling and milk proteins. This means milk, colostrum, and milk replacer bypass the rumen, while water enters it ## Synonyms * ruminant reticular groove - * esophageal groove [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * reticular groove [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * esophageal groove [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * reticular groove [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0010329.md b/md/UBERON/29/UBERON_0010329.md index 9c74b57e61..00582b8b42 100644 --- a/md/UBERON/29/UBERON_0010329.md +++ b/md/UBERON/29/UBERON_0010329.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010329 * *Label* = paired limb/fin bud mesenchyme - * *Definition* = Mesenchyme that is part of a limb/fin bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a limb/fin bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired limb/fin bud](../../UBERON/57/UBERON_0004357.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0010929.md b/md/UBERON/29/UBERON_0010929.md index 652d146ed3..bf712cc64f 100644 --- a/md/UBERON/29/UBERON_0010929.md +++ b/md/UBERON/29/UBERON_0010929.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0011629.md b/md/UBERON/29/UBERON_0011629.md index b1e0cd3f44..c106654d93 100644 --- a/md/UBERON/29/UBERON_0011629.md +++ b/md/UBERON/29/UBERON_0011629.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0011929.md b/md/UBERON/29/UBERON_0011929.md index 343ffbcb8e..b2d55d7102 100644 --- a/md/UBERON/29/UBERON_0011929.md +++ b/md/UBERON/29/UBERON_0011929.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011929 * *Label* = postganglionic parasympathetic fiber - * *Definition* = A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008313] + * *Definition* = A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008313 ] ## Synonyms - * parasympathetic postganglionic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008313] + * parasympathetic postganglionic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008313 ] ## Cross-references * MESH:A08.663.542.100.700 - * UMLS:C0206252 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Postganglionic_Parasympathetic_Fiber] + * UMLS:C0206252 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Postganglionic_Parasympathetic_Fiber ] * ncithesaurus:Postganglionic_Parasympathetic_Fiber ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [parasympathetic nervous system](../../UBERON/11/UBERON_0000011.md) and [postganglionic autonomic fiber](../../UBERON/24/UBERON_0011924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011929 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0012129.md b/md/UBERON/29/UBERON_0012129.md index e0f8e6dbb5..f83b5fc506 100644 --- a/md/UBERON/29/UBERON_0012129.md +++ b/md/UBERON/29/UBERON_0012129.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012129 * *Label* = radial head of humerus - * *Definition* = Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:curators] + * *Definition* = Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:curators ] ## Synonyms * capitellum of humerus * radial condyle of humerus * capitellum - * eminentia capitata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000838] - * radial condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000838] + * eminentia capitata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000838 ] + * radial condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000838 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process[AAO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0012329.md b/md/UBERON/29/UBERON_0012329.md index 8b68237102..105925c1ee 100644 --- a/md/UBERON/29/UBERON_0012329.md +++ b/md/UBERON/29/UBERON_0012329.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012329 * *Label* = keratinized stratified squamous epithelium - * *Definition* = Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45568[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_squamous_epithelium#Keratinized] + * *Definition* = Keratinized stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesize and accumulate keratin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45568, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_squamous_epithelium#Keratinized ] ## Synonyms - * epithelium stratificatum squamosum cornificatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45568[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epithelium stratificatum squamosum cornificatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45568, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [keratin filament](../../GO/95/GO_0045095.md) and [stratified squamous epithelium](../../UBERON/15/UBERON_0006915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012329 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0012429.md b/md/UBERON/29/UBERON_0012429.md index ade74b4608..3fdd1a3161 100644 --- a/md/UBERON/29/UBERON_0012429.md +++ b/md/UBERON/29/UBERON_0012429.md @@ -3,20 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012429 * *Label* = hemopoietic tissue - * *Definition* = Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] + * *Definition* = Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue ] * *Comment* = Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue ## Synonyms - * haemopoietic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14073] - * hematopoietic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14073] - * textus haemopoieticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14073] + * haemopoietic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14073 ] + * hematopoietic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14073 ] + * textus haemopoieticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14073 ] + * bone marrow tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606 ] ## Cross-references * CALOHA:TS-2142 * FMA:14073 - * UMLS:C0229619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hematopoietic_Tissue] + * UMLS:C0229619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hematopoietic_Tissue ] * ncithesaurus:Hematopoietic_Tissue ## Subsets @@ -31,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [site_of](../../core#site/of/core#site_of.md) some [hemopoiesis](../../GO/97/GO_0030097.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012429 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0013129.md b/md/UBERON/29/UBERON_0013129.md index ac9ce150a4..d91221d88f 100644 --- a/md/UBERON/29/UBERON_0013129.md +++ b/md/UBERON/29/UBERON_0013129.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013129 * *Label* = bulb of vestibule - * *Definition* = aggregations of erectile tissue that are an internal part of the clitoris. They can also be found throughout the vestibule: next to the clitoral body, clitoral crura, urethra, urethral sponge, and vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_bulbs] + * *Definition* = aggregations of erectile tissue that are an internal part of the clitoris. They can also be found throughout the vestibule: next to the clitoral body, clitoral crura, urethra, urethral sponge, and vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_bulbs ] ## Synonyms - * bulbus vestibuli vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_bulbs[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibular bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20199] + * bulbus vestibuli vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_bulbs, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibular bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20199 ] * vestibular bulb of vagina - * bulbus vestibuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_bulbs] - * clitoral bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_bulbs] + * bulbus vestibuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_bulbs ] + * clitoral bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_bulbs ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cavernous organ, located in labium minus . Examples: There iare only two bulbs of vestibule, the right and the left.[FMA] * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0013128 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013129 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0013229.md b/md/UBERON/29/UBERON_0013229.md index 00fea8cead..c0c999a812 100644 --- a/md/UBERON/29/UBERON_0013229.md +++ b/md/UBERON/29/UBERON_0013229.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013229 * *Label* = eyelid gland - * *Definition* = Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013229 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0013529.md b/md/UBERON/29/UBERON_0013529.md index 1038ecaa23..dd75d38cc0 100644 --- a/md/UBERON/29/UBERON_0013529.md +++ b/md/UBERON/29/UBERON_0013529.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013529 * *Label* = Brodmann area - * *Definition* = A Brodmann area is a region of the cerebral cortex defined based on its cytoarchitectonics, or structure and organization of cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area] + * *Definition* = A Brodmann area is a region of the cerebral cortex defined based on its cytoarchitectonics, or structure and organization of cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area ] ## Synonyms - * Brodmann parcellation scheme region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1731] - * Brodmann partition scheme region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1731] - * Brodmann's areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1731[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * nucleus tuberomamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tuberomamillaris hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tubero-mamillary area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] - * tuberomammillary nucleus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] - * ventral tuberomammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] + * Brodmann parcellation scheme region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1731 ] + * Brodmann partition scheme region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1731 ] + * Brodmann's areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1731, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * nucleus tuberomamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tuberomamillaris hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tubero-mamillary area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] + * tuberomammillary nucleus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] + * ventral tuberomammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] ## Cross-references * BAMS:VTM * FMA:68596 * NIF_GrossAnatomy:birnlex_1731 - * NeuroNames:427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1731] + * NeuroNames:427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1731 ] * SCTID:384717008 * Wikipedia:Brodmann_area * WikipediaCategory:Brodmann_areas @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0013629.md b/md/UBERON/29/UBERON_0013629.md index 591e9417e0..fc731b3288 100644 --- a/md/UBERON/29/UBERON_0013629.md +++ b/md/UBERON/29/UBERON_0013629.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0014529.md b/md/UBERON/29/UBERON_0014529.md index 455928e142..71d124b572 100644 --- a/md/UBERON/29/UBERON_0014529.md +++ b/md/UBERON/29/UBERON_0014529.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014529 * *Label* = lenticular fasciculus - * *Definition* = The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lenticular_fasciculus] + * *Definition* = The lenticular fasciculus is a tract connecting the globus pallidus to the Thalamic fasciculus. The thalamic fasciculus (composed of the lenticular fasciculus and ansa lenticularis) runs into the Thalamus. It connects the globus pallidus to the thalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lenticular_fasciculus ] * *Comment* = AO notes: FMA appears to divide this into diencephalon and telencephalon parts ## Synonyms - * dorsal division of ansa lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61976] - * fasciculus lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * fasciculus lenticularis [h2] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * forel's field h2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62067] - * lenticular fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61976] - * lenticular fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010015] - * lenticular fasciculus [h2] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62067] - * lenticular fasciculus of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62067] - * lenticular fasciculus of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61976] - * tegmental area h2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62067] - * Forel's field H2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010015] - * fasciculus lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lenticular_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * field H2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010015] - * field H2 of Forel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010015] + * dorsal division of ansa lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61976 ] + * fasciculus lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * fasciculus lenticularis [h2] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * forel's field h2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62067 ] + * lenticular fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61976 ] + * lenticular fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010015 ] + * lenticular fasciculus [h2] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62067 ] + * lenticular fasciculus of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62067 ] + * lenticular fasciculus of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61976 ] + * tegmental area h2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62067 ] + * Forel's field H2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010015 ] + * fasciculus lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lenticular_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * field H2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010015 ] + * field H2 of Forel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010015 ] ## Cross-references @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014529 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0014629.md b/md/UBERON/29/UBERON_0014629.md index dd16a5b576..c00e8d51dc 100644 --- a/md/UBERON/29/UBERON_0014629.md +++ b/md/UBERON/29/UBERON_0014629.md @@ -6,13 +6,13 @@ ## Synonyms - * terminal part of the cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2559[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * terminal part of the cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2559, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_2559 * SCTID:279780007 - * UMLS:C0458768 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2559] + * UMLS:C0458768 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2559 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014629 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0014729.md b/md/UBERON/29/UBERON_0014729.md index f2349516fa..9dd917b7f0 100644 --- a/md/UBERON/29/UBERON_0014729.md +++ b/md/UBERON/29/UBERON_0014729.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014729 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_0015029.md b/md/UBERON/29/UBERON_0015029.md index 2282f84ee4..8c619e064c 100644 --- a/md/UBERON/29/UBERON_0015029.md +++ b/md/UBERON/29/UBERON_0015029.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015029 * *Label* = manual digit 5 phalanx endochondral element - * *Definition* = A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 5 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 5 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 5 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 5 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [manual digit 5 phalanx cartilage element](../../UBERON/79/UBERON_0010679.md)or[manual digit 5 phalanx pre-cartilage condensation](../../UBERON/79/UBERON_0010579.md)or[manual digit 5 phalanx](../../UBERON/39/UBERON_0003639.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015029 + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2000429.md b/md/UBERON/29/UBERON_2000429.md index 7d9d89036f..d162619175 100644 --- a/md/UBERON/29/UBERON_2000429.md +++ b/md/UBERON/29/UBERON_2000429.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000429 * *Label* = scaphium - * *Definition* = Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian ossicle 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000429] - * second Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000429] + * Weberian ossicle 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000429 ] + * second Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000429 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2000629.md b/md/UBERON/29/UBERON_2000629.md index 43de0760a8..f22432aee1 100644 --- a/md/UBERON/29/UBERON_2000629.md +++ b/md/UBERON/29/UBERON_2000629.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2000729.md b/md/UBERON/29/UBERON_2000729.md index a88b1c7e46..de46f6d40f 100644 --- a/md/UBERON/29/UBERON_2000729.md +++ b/md/UBERON/29/UBERON_2000729.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000729 * *Label* = epaxial region somite 3 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2000829.md b/md/UBERON/29/UBERON_2000829.md index b2d57e531c..8529b4ae77 100644 --- a/md/UBERON/29/UBERON_2000829.md +++ b/md/UBERON/29/UBERON_2000829.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000829 * *Label* = sclerotome somite 11 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2000929.md b/md/UBERON/29/UBERON_2000929.md index 7a24e32563..1ea3848bff 100644 --- a/md/UBERON/29/UBERON_2000929.md +++ b/md/UBERON/29/UBERON_2000929.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000929 * *Label* = myotome somite 21 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001129.md b/md/UBERON/29/UBERON_2001129.md index caaccbb4a5..48ed107655 100644 --- a/md/UBERON/29/UBERON_2001129.md +++ b/md/UBERON/29/UBERON_2001129.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001229.md b/md/UBERON/29/UBERON_2001229.md index eff74a79db..dce9eb2f17 100644 --- a/md/UBERON/29/UBERON_2001229.md +++ b/md/UBERON/29/UBERON_2001229.md @@ -6,9 +6,9 @@ ## Synonyms - * branchial arch 5 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001229] - * gill arch 5 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001229] - * visceral arch 7 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001229] + * branchial arch 5 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001229 ] + * gill arch 5 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001229 ] + * visceral arch 7 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001229 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001529.md b/md/UBERON/29/UBERON_2001529.md index a8e01ea21f..d38bffea4f 100644 --- a/md/UBERON/29/UBERON_2001529.md +++ b/md/UBERON/29/UBERON_2001529.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001529 * *Label* = epibranchial 3 cartilage - * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001629.md b/md/UBERON/29/UBERON_2001629.md index a463215694..278a7a15d5 100644 --- a/md/UBERON/29/UBERON_2001629.md +++ b/md/UBERON/29/UBERON_2001629.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001629 * *Label* = otic sensory canal - * *Definition* = Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001729.md b/md/UBERON/29/UBERON_2001729.md index a8fda2043e..5efe8b1936 100644 --- a/md/UBERON/29/UBERON_2001729.md +++ b/md/UBERON/29/UBERON_2001729.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001729 * *Label* = caudal principal ray 17 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 16. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 16. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001829.md b/md/UBERON/29/UBERON_2001829.md index 1e77966278..b0d9a14602 100644 --- a/md/UBERON/29/UBERON_2001829.md +++ b/md/UBERON/29/UBERON_2001829.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001829 * *Label* = caudal fin dorsal procurrent ray - * *Definition* = Caudal procurrent ray that forms part of the anterior dorsal series of lepidotrichia of the caudal fin and may be associated with a neural spine or a epural or a uroneural. A pair of hemitrichia forms each ray. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_2008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal procurrent ray that forms part of the anterior dorsal series of lepidotrichia of the caudal fin and may be associated with a neural spine or a epural or a uroneural. A pair of hemitrichia forms each ray. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_2008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal caudal procurrent ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001829] - * dorsal procurrent caudal-fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001829] + * dorsal caudal procurrent ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001829 ] + * dorsal procurrent caudal-fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001829 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2005262 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2001929.md b/md/UBERON/29/UBERON_2001929.md index 98d5bddf85..da0f86de98 100644 --- a/md/UBERON/29/UBERON_2001929.md +++ b/md/UBERON/29/UBERON_2001929.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001929 * *Label* = epioccipital posterior process - * *Definition* = Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2002029.md b/md/UBERON/29/UBERON_2002029.md index f476bc530a..92674216bf 100644 --- a/md/UBERON/29/UBERON_2002029.md +++ b/md/UBERON/29/UBERON_2002029.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002029 * *Label* = pectoral fin proximal radial bone 4 - * *Definition* = pectoral fin proximal radial 4 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 4 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fourth pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002029] + * fourth pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002029 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin proximal radial element 4](../../UBERON/29/UBERON_2102029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2002129.md b/md/UBERON/29/UBERON_2002129.md index 4b9fbff620..69e8660a9d 100644 --- a/md/UBERON/29/UBERON_2002129.md +++ b/md/UBERON/29/UBERON_2002129.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002129 * *Label* = caudal rod - * *Definition* = Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal @@ -11,7 +11,7 @@ of Vertebrate Paleontology 27(1):17-25 ## Synonyms - * hypural-opisthural rod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002129] + * hypural-opisthural rod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002129 ] ## Cross-references @@ -35,7 +35,9 @@ of Vertebrate Paleontology 27(1):17-25 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2002229.md b/md/UBERON/29/UBERON_2002229.md index abdd2d5612..f7bdfad3a8 100644 --- a/md/UBERON/29/UBERON_2002229.md +++ b/md/UBERON/29/UBERON_2002229.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2005029.md b/md/UBERON/29/UBERON_2005029.md index 6ddb10b990..d4126617bd 100644 --- a/md/UBERON/29/UBERON_2005029.md +++ b/md/UBERON/29/UBERON_2005029.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005029 * *Label* = rostral blood island - * *Definition* = Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * RBI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005029] + * RBI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005029 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2007029.md b/md/UBERON/29/UBERON_2007029.md index 6548197741..7dae56b08e 100644 --- a/md/UBERON/29/UBERON_2007029.md +++ b/md/UBERON/29/UBERON_2007029.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2102029.md b/md/UBERON/29/UBERON_2102029.md index 092e5d4d91..7a1050c02e 100644 --- a/md/UBERON/29/UBERON_2102029.md +++ b/md/UBERON/29/UBERON_2102029.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2102029 * *Label* = pectoral fin proximal radial element 4 - * *Definition* = Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral fin proximal radial element that is the fourth most anterior or dorsal pectoral fin radial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * fourth pectoral basal radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002029] + * fourth pectoral basal radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002029 ] ## Cross-references @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_2202029.md b/md/UBERON/29/UBERON_2202029.md index a69c52e332..ce581d5a28 100644 --- a/md/UBERON/29/UBERON_2202029.md +++ b/md/UBERON/29/UBERON_2202029.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202029 * *Label* = pectoral fin proximal radial cartilage 4 - * *Definition* = pectoral fin proximal radial 4 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial 4 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fourth pectoral basal radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002029] + * fourth pectoral basal radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002029 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin proximal radial element 4](../../UBERON/29/UBERON_2102029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3000329.md b/md/UBERON/29/UBERON_3000329.md index 12e6baf42e..d8d6788ec6 100644 --- a/md/UBERON/29/UBERON_3000329.md +++ b/md/UBERON/29/UBERON_3000329.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000329 * *Label* = oblique cartilage - * *Definition* = Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Semi-circular cartilaginous sheet that lies lateral to the side of the septum nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * cartilago obliqua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000329] - * cartilago obliqua nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000329] - * cartilago obliquo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000329] - * dorsal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000329] - * lamina obliqua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000329] + * cartilago obliqua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000329 ] + * cartilago obliqua nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000329 ] + * cartilago obliquo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000329 ] + * dorsal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000329 ] + * lamina obliqua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000329 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3000829.md b/md/UBERON/29/UBERON_3000829.md index 1f7212ba91..b6f8b079ab 100644 --- a/md/UBERON/29/UBERON_3000829.md +++ b/md/UBERON/29/UBERON_3000829.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000829 * *Label* = margo scapularis - * *Definition* = Lateral margin of the suprascapula, which articulates with the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral margin of the suprascapula, which articulates with the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3010029.md b/md/UBERON/29/UBERON_3010029.md index 7de43e3688..78bba27f37 100644 --- a/md/UBERON/29/UBERON_3010029.md +++ b/md/UBERON/29/UBERON_3010029.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010029 * *Label* = obsolete gonochoristic organism - * *Definition* = Multi-cellular organism that has male and female sexes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Multi-cellular organism that has male and female sexes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms ## Cross-references - * CARO:0000048 [[rdf-schema#label](../../el/rdf-schema#label.md) = + gonochoristic organism] + * CARO:0000048 [ [rdf-schema#label](../../el/rdf-schema#label.md) = gonochoristic organism ] ## Subsets @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/29/UBERON_3010229.md b/md/UBERON/29/UBERON_3010229.md index c316a93705..972b3c371e 100644 --- a/md/UBERON/29/UBERON_3010229.md +++ b/md/UBERON/29/UBERON_3010229.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3010329.md b/md/UBERON/29/UBERON_3010329.md index ee936f9df4..5d942f08eb 100644 --- a/md/UBERON/29/UBERON_3010329.md +++ b/md/UBERON/29/UBERON_3010329.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/29/UBERON_3010529.md b/md/UBERON/29/UBERON_3010529.md index 501b8cc199..db8120c512 100644 --- a/md/UBERON/29/UBERON_3010529.md +++ b/md/UBERON/29/UBERON_3010529.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010529 * *Label* = ovisac - * *Definition* = Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -32,7 +32,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3010629.md b/md/UBERON/29/UBERON_3010629.md index 4e3eb85d8f..adf2685267 100644 --- a/md/UBERON/29/UBERON_3010629.md +++ b/md/UBERON/29/UBERON_3010629.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010630 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/29/UBERON_3010729.md b/md/UBERON/29/UBERON_3010729.md index 580f3fe688..681a592c04 100644 --- a/md/UBERON/29/UBERON_3010729.md +++ b/md/UBERON/29/UBERON_3010729.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010729 * *Label* = M. coracobrachialis longus - * *Definition* = Muscle which originates as a long belly from the dorsal coracoid near the sternum and inserts on the shaft of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates as a long belly from the dorsal coracoid near the sternum and inserts on the shaft of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_3010829.md b/md/UBERON/29/UBERON_3010829.md index af090adfa8..418aab2820 100644 --- a/md/UBERON/29/UBERON_3010829.md +++ b/md/UBERON/29/UBERON_3010829.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_4200029.md b/md/UBERON/29/UBERON_4200029.md index 3ecf94edf9..2c01708d93 100644 --- a/md/UBERON/29/UBERON_4200029.md +++ b/md/UBERON/29/UBERON_4200029.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_4200129.md b/md/UBERON/29/UBERON_4200129.md index da55311fed..e61bc1a157 100644 --- a/md/UBERON/29/UBERON_4200129.md +++ b/md/UBERON/29/UBERON_4200129.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/29/UBERON_4300029.md b/md/UBERON/29/UBERON_4300029.md index 82f1de176c..576f6b20b0 100644 --- a/md/UBERON/29/UBERON_4300029.md +++ b/md/UBERON/29/UBERON_4300029.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300029 * *Label* = dermal neck joint - * *Definition* = Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI: 10.1146/annurev-earth-040809-152507 [Young, 2010]] + * *Definition* = Dermal articulation between skull and shoulder girdle localized to paired dermal neck-joint between anterior dorsolateral plate (ADL) and paranuchal (PNu) plates in placoderms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI: 10.1146/annurev-earth-040809-152507 [Young, 2010] ] * *Comment* = TODO: add ADL and PNu classes and relationships ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0000030.md b/md/UBERON/30/UBERON_0000030.md index be57f77c17..45fccecebe 100644 --- a/md/UBERON/30/UBERON_0000030.md +++ b/md/UBERON/30/UBERON_0000030.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000030 * *Label* = lamina propria - * *Definition* = A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamina_propria] + * *Definition* = A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamina_propria ] * *Comment* = Editor notes: need to implement rules such that "lamina propria of X" is classified as part of some "mucosa of X" ## Synonyms * lamina propria mucosa * lamina propria mucosae - * tunica propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002330] + * tunica propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002330 ] ## Cross-references * BTO:0002330 * FMA:62517 * SCTID:298225002 - * UMLS:C1179187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lamina_Propria] + * UMLS:C1179187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lamina_Propria ] * Wikipedia:Lamina_propria * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/GI_Organization.svg/250px-GI_Organization.svg.png * ncithesaurus:Lamina_Propria @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0000130.md b/md/UBERON/30/UBERON_0000130.md index 68411f9a83..3583ad9e56 100644 --- a/md/UBERON/30/UBERON_0000130.md +++ b/md/UBERON/30/UBERON_0000130.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000130 * *Label* = transverse foramen - * *Definition* = Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_foramen] + * *Definition* = Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_foramen ] ## Synonyms - * foramen transversarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_foramen] - * foramen transversarium of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23998] - * transverse foramen of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23997] - * foramen transversarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_foramen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * foramen transversarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_foramen ] + * foramen transversarium of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23998 ] + * transverse foramen of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23997 ] + * foramen transversarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_foramen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0000430.md b/md/UBERON/30/UBERON_0000430.md index f82c09e38c..7cfc1d7f73 100644 --- a/md/UBERON/30/UBERON_0000430.md +++ b/md/UBERON/30/UBERON_0000430.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000430 * *Label* = ventral intermediate nucleus of thalamus - * *Definition* = A nucleus medially located within the ventral nuclei of the thalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002469] + * *Definition* = A nucleus medially located within the ventral nuclei of the thalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002469 ] ## Synonyms - * intermediate thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000370] - * nucleus ventralis intermedius thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002469] + * intermediate thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000370 ] + * nucleus ventralis intermedius thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002469 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0000930.md b/md/UBERON/30/UBERON_0000930.md index acf8f46deb..5b2b1529b4 100644 --- a/md/UBERON/30/UBERON_0000930.md +++ b/md/UBERON/30/UBERON_0000930.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000930 * *Label* = stomodeum - * *Definition* = Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomodeum] + * *Definition* = Anterior part of the embryonic digestive tract that develops into a mouth. The stomodeum includes as parts an invagination of the ectoderm and the stomodeal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomodeum ] * *Comment* = Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity. ## Synonyms - * mouth primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000269] - * primitive oral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * stomatodeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomodeum] + * mouth primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000269 ] + * primitive oral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * stomatodeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomodeum ] * stomodaeum - * mouth pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16263] - * oral pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16263] + * mouth pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16263 ] + * oral pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16263 ] ## Cross-references @@ -23,7 +23,7 @@ * FBbt:00000439 * TAO:0001290 * TGMA:0000135 - * UMLS:C1514977 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stomodeum] + * UMLS:C1514977 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stomodeum ] * Wikipedia:Stomodeum * XAO:0000269 * ZFA:0001290 @@ -53,9 +53,11 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO] + * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = stomodeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001030.md b/md/UBERON/30/UBERON_0001030.md index 6d1f3f5a85..501f0762d3 100644 --- a/md/UBERON/30/UBERON_0001030.md +++ b/md/UBERON/30/UBERON_0001030.md @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:67107 * *[consider](../../er/oboInOwl#consider.md)* = GO:0048788 * *[consider](../../er/oboInOwl#consider.md)* = NIF_Subcellular:sao1884931180 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001030 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_0001130.md b/md/UBERON/30/UBERON_0001130.md index 8bda7cf893..04e6651b52 100644 --- a/md/UBERON/30/UBERON_0001130.md +++ b/md/UBERON/30/UBERON_0001130.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001130 * *Label* = vertebral column - * *Definition* = Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000185[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941] + * *Definition* = Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body[modified from VSAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000185, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941 ] * *Comment* = Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton ## Synonyms - * spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13478] - * backbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13478] - * vertebral column skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000699] - * columna vertebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000818] - * dorsal spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000818] - * spinal column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.232.834] + * spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13478 ] + * backbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13478 ] + * vertebral column skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000699 ] + * columna vertebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000818 ] + * dorsal spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000818 ] + * spinal column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.232.834 ] * vertebral region ## Cross-references @@ -34,8 +34,8 @@ * OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA * SCTID:44300000 * TAO:0001559 - * UMLS:C0037949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Column] - * UMLS:C1519455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord_Column] + * UMLS:C0037949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Column ] + * UMLS:C1519455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord_Column ] * VHOG:0001142 * VSAO:0000185 * Wikipedia:Vertebral_column @@ -70,8 +70,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The vertebral column consists of a series of vertebrae connected by ligaments. It provides a supporting axis for the body and protects the spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrata is characterized by three synapomorphies. First, vertebrates have a backbone composed of vertebrae (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001230.md b/md/UBERON/30/UBERON_0001230.md index 5c02f0b625..7d42f81b1b 100644 --- a/md/UBERON/30/UBERON_0001230.md +++ b/md/UBERON/30/UBERON_0001230.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001230 * *Label* = glomerular capsule - * *Definition* = The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bowman%27s_capsule] + * *Definition* = The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bowman%27s_capsule ] * *Comment* = One fold of the S-shaped body gives rise to Bowmans capsule[GUDMAP] ## Synonyms - * Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] - * Bowmans capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + KUPO:0001001] - * capsula glomerularis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * renal glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005254] - * Mueller capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002297] - * Muellerian capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002297] - * bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005254] - * capsula glomeruli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * malphigian capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002297] - * pronephric glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005310] + * Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] + * Bowmans capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = KUPO:0001001 ] + * capsula glomerularis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * renal glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005254 ] + * Mueller capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002297 ] + * Muellerian capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002297 ] + * bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005254 ] + * capsula glomeruli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * malphigian capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002297 ] + * pronephric glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005310 ] ## Cross-references @@ -31,7 +31,7 @@ * SCTID:361331000 * TAO:0005254 * TAO:0005310 - * UMLS:C0524448 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bowman_s_Capsule] + * UMLS:C0524448 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bowman_s_Capsule ] * Wikipedia:Bowman%27s_capsule * ZFA:0005254 * ZFA:0005310 @@ -61,8 +61,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001330.md b/md/UBERON/30/UBERON_0001330.md index e30f77dfc5..2fad258bbe 100644 --- a/md/UBERON/30/UBERON_0001330.md +++ b/md/UBERON/30/UBERON_0001330.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001330 * *Label* = pampiniform plexus - * *Definition* = The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pampiniform_venous_plexus] + * *Definition* = The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pampiniform_venous_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * pampiniform venous plexus * plexus of veins of fascia of prostate - * plexus venosus pampiniformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus venosus pampiniformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * venous plexus of fascia of prostate * venous plexus of fascia of prostate gland @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001430.md b/md/UBERON/30/UBERON_0001430.md index c759cdbc8b..f50a350677 100644 --- a/md/UBERON/30/UBERON_0001430.md +++ b/md/UBERON/30/UBERON_0001430.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001430 * *Label* = distal carpal bone 1 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezium_(bone)] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezium_(bone) ] * *Comment* = Taxon notes: located between radiale and first metacarpal[VSAO]. in humans - The capitate articulates with 1st metacarpal distally, scaphoid proximally, trapezoid medially, 2nd metacarpal medially[WP] ## Synonyms - * distal carpal 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005043] + * distal carpal 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005043 ] * greater multangular bone - * os trapezium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005043] - * trapezial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23721] - * trapezium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005043] - * trapezium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23721] - * carpal 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010634] + * os trapezium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005043 ] + * trapezial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23721 ] + * trapezium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005043 ] + * trapezium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23721 ] + * carpal 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010634 ] * greater multangular - * greater multiangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001340] - * hand distal carpal bone 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001340] + * greater multiangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001340 ] + * hand distal carpal bone 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001340 ] * manus distal carpal bone 1 ## Cross-references @@ -27,7 +27,7 @@ * MA:0001340 * OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA * SCTID:361780007 - * UMLS:C0223736 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trapezial_Bone] + * UMLS:C0223736 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trapezial_Bone ] * VSAO:0005043 * Wikipedia:Trapezium_(bone) * galen:Trapezium @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal bone 1 endochondral element](../../UBERON/84/UBERON_0015084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001530.md b/md/UBERON/30/UBERON_0001530.md index 0eb3ea0b9d..e210c26c4f 100644 --- a/md/UBERON/30/UBERON_0001530.md +++ b/md/UBERON/30/UBERON_0001530.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001530 * *Label* = common carotid artery plus branches - * *Definition* = A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_carotid_artery] + * *Definition* = A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_carotid_artery ] * *Comment* = Editor notes: we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'. Development notes: in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae ## Synonyms - * carotid artery system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000217] - * common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3939[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * trunk of common carotid tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3939] - * carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3939] - * a. carotis communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_carotid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * carotid artery system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000217 ] + * common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3939, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * trunk of common carotid tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3939 ] + * carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3939 ] + * a. carotis communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_carotid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001926 * MESH:A07.231.114.186.200 * SCTID:362041005 - * UMLS:C0162859 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Carotid_Artery] + * UMLS:C0162859 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Carotid_Artery ] * VHOG:0000272 * Wikipedia:Common_carotid_artery * http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001630.md b/md/UBERON/30/UBERON_0001630.md index 63387ecb4c..1810287fb0 100644 --- a/md/UBERON/30/UBERON_0001630.md +++ b/md/UBERON/30/UBERON_0001630.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001630 * *Label* = muscle organ - * *Definition* = Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007517] + * *Definition* = Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007517 ] ## Synonyms - * muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005145] + * muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005145 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [muscle tissue](../../UBERON/85/UBERON_0002385.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It seems clear that the metazoan ancestor inherited from its unicellular descendants an actin cytoskeleton and motor-proteins of the myosin superfamily. Within metazoans, these two molecules were arranged into effective contractile units, the muscles. The basic trends for muscle evolution are already expressed in the diploblastic taxa.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = muscular * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001730.md b/md/UBERON/30/UBERON_0001730.md index 3aa7e379e9..72d4d62cff 100644 --- a/md/UBERON/30/UBERON_0001730.md +++ b/md/UBERON/30/UBERON_0001730.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001830.md b/md/UBERON/30/UBERON_0001830.md index e55a0f2489..a2f728538e 100644 --- a/md/UBERON/30/UBERON_0001830.md +++ b/md/UBERON/30/UBERON_0001830.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001830 * *Label* = minor salivary gland - * *Definition* = the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003791[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salivary_gland#Minor_Salivary_Glands] + * *Definition* = the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003791, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salivary_gland#Minor_Salivary_Glands ] ## Synonyms @@ -15,7 +15,7 @@ * MA:0002479 * MESH:A10.336.779.650 * SCTID:362177001 - * UMLS:C0036099 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Minor_Salivary_Gland] + * UMLS:C0036099 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Minor_Salivary_Gland ] * Wikipedia:Salivary_gland#Minor_Salivary_Glands * galen:MinorSalivaryGland * ncithesaurus:Minor_Salivary_Gland @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0001930.md b/md/UBERON/30/UBERON_0001930.md index 1514245fa0..be83bf5592 100644 --- a/md/UBERON/30/UBERON_0001930.md +++ b/md/UBERON/30/UBERON_0001930.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001930 * *Label* = paraventricular nucleus of hypothalamus - * *Definition* = The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraventricular_nucleus_of_hypothalamus] + * *Definition* = The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraventricular_nucleus_of_hypothalamus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,17 +11,17 @@ * filiform nucleus * paraventricular hypothalamic nucleus * paraventricular nucleus - * Pa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1407[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei paraventriculares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei paraventricularis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraventricular_nucleus_of_hypothalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus filiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus hypothalami filiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus hypothalami paraventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus paraventricularis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002476] - * paraventricular nucleus hypothalamus (Malone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387] - * paraventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387] - * parvocellular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVH] - * subcommissural nucleus (Ziehen) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:387] + * Pa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1407, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei paraventriculares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei paraventricularis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraventricular_nucleus_of_hypothalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus filiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus hypothalami filiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus hypothalami paraventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus paraventricularis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002476 ] + * paraventricular nucleus hypothalamus (Malone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387 ] + * paraventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387 ] + * parvocellular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVH ] + * subcommissural nucleus (Ziehen) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:387 ] ## Cross-references @@ -38,9 +38,9 @@ * MA:0000848 * MESH:A08.186.211.730.385.357.342.400 * NIF_GrossAnatomy:birnlex_1407 - * NeuroNames:387 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1407] + * NeuroNames:387 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1407 ] * SCTID:369131006 - * UMLS:C0030532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1407] + * UMLS:C0030532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1407 ] * Wikipedia:Paraventricular_nucleus_of_hypothalamus * http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg * http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg @@ -63,8 +63,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002030.md b/md/UBERON/30/UBERON_0002030.md index 75317b71f7..13a711b50b 100644 --- a/md/UBERON/30/UBERON_0002030.md +++ b/md/UBERON/30/UBERON_0002030.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002030 * *Label* = nipple - * *Definition* = Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67771[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nipple] + * *Definition* = Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67771, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nipple ] * *Comment* = Taxon Notes: a male mouse has no nipples - mammary tissue regresses during embryonic development. AO notes: FMA makes this part of the breast, whereas in MA it is part of the mammary gland - ## Synonyms - * papilla mammae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009723] + * papilla mammae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009723 ] * papilla of breast * papillary part of breast * teat - * thele [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009723] - * thelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009723] - * papilla mammaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nipple[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * thele [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009723 ] + * thelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009723 ] + * papilla mammaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nipple, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A01.236.500 * OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA * SCTID:265780004 - * UMLS:C0028109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nipple] + * UMLS:C0028109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nipple ] * Wikipedia:Nipple * galen:Nipple * http://upload.wikimedia.org/wikipedia/commons/5/59/Female_nipple_profile.jpg @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002130.md b/md/UBERON/30/UBERON_0002130.md index 63c992d4fc..5b349a798b 100644 --- a/md/UBERON/30/UBERON_0002130.md +++ b/md/UBERON/30/UBERON_0002130.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002130 * *Label* = cerebellar nuclear complex - * *Definition* = the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009979[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cerebellar_nuclei] + * *Definition* = the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009979, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cerebellar_nuclei ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * central nuclei * cerebellar nuclei - * deep cerebellar nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1568] + * deep cerebellar nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1568 ] * deep cerebellar nuclei * intracerebellar nuclei * intrinsic nuclei of cerebellum - * nuclei cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72249[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72249, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * roof nuclei-2 - * nuclei cerebellares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:682[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei cerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:682[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cerebellar_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei cerebellares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:682, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei cerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:682, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cerebellar_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,8 @@ * GAID:599 * MESH:A08.186.211.132.810.428.200.337 * NIF_GrossAnatomy:birnlex_1568 - * NeuroNames:682 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1568] - * UMLS:C0007763 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1568] + * NeuroNames:682 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1568 ] + * UMLS:C0007763 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1568 ] * Wikipedia:Deep_cerebellar_nuclei * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png @@ -58,8 +58,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004007 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002230.md b/md/UBERON/30/UBERON_0002230.md index 4667802d5e..042e554182 100644 --- a/md/UBERON/30/UBERON_0002230.md +++ b/md/UBERON/30/UBERON_0002230.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002230 * *Label* = head of rib - * *Definition* = The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_rib] + * *Definition* = The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_rib ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * rib head - * caput costae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caput costae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7575 * MA:0001415 * SCTID:263358001 - * UMLS:C0222806 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_Head] + * UMLS:C0222806 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_Head ] * Wikipedia:Head_of_rib * http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002330.md b/md/UBERON/30/UBERON_0002330.md index 6064b78dd1..8de9acb15b 100644 --- a/md/UBERON/30/UBERON_0002330.md +++ b/md/UBERON/30/UBERON_0002330.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002330 * *Label* = exocrine system - * *Definition* = Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exocrine_gland] + * *Definition* = Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exocrine_gland ] ## Synonyms - * exocrine glandular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002225] + * exocrine glandular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002225 ] ## Cross-references @@ -15,7 +15,7 @@ * EHDAA2:0002225 * FMA:85539 * MA:0002411 - * UMLS:C1516995 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Exocrine_System] + * UMLS:C1516995 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Exocrine_System ] * Wikipedia:Exocrine_gland * WikipediaCategory:Exocrine_system * ncithesaurus:Exocrine_System @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002430.md b/md/UBERON/30/UBERON_0002430.md index 680e136f61..b5b996575a 100644 --- a/md/UBERON/30/UBERON_0002430.md +++ b/md/UBERON/30/UBERON_0002430.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002430 * *Label* = lateral hypothalamic area - * *Definition* = The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_hypothalamic_area] + * *Definition* = The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_hypothalamic_area ] ## Synonyms - * area hypothalamica lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62030[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area hypothalamica lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62030, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * lateral division of hypothalamus * lateral group of hypothalamic nuclei * lateral hypothalamic group - * lateral hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62030] + * lateral hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62030 ] * lateral hypothalamic zone (crosby) - * LH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4037[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area lateralis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:426[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral hypothalamic area (Nissl 1913) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:426] - * lateral hypothalamic area proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LHA] - * lateral hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000834] + * LH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4037, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area lateralis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:426, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral hypothalamic area (Nissl 1913) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:426 ] + * lateral hypothalamic area proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LHA ] + * lateral hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000834 ] ## Cross-references @@ -31,8 +31,8 @@ * MA:0000834 * MESH:A08.186.211.730.385.357.300 * NIF_GrossAnatomy:birnlex_4037 - * NeuroNames:426 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4037] - * UMLS:C0020654 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4037] + * NeuroNames:426 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4037 ] + * UMLS:C0020654 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4037 ] * Wikipedia:Lateral_hypothalamic_area * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002530.md b/md/UBERON/30/UBERON_0002530.md index a0aacb1323..9cc068f3c7 100644 --- a/md/UBERON/30/UBERON_0002530.md +++ b/md/UBERON/30/UBERON_0002530.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002530 * *Label* = gland - * *Definition* = A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gland] + * *Definition* = A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gland ] ## Synonyms - * Druese [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000522] - * glandula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000522] - * glandula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Druese [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000522 ] + * glandula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000522 ] + * glandula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * MIAA:0000021 * OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA * SCTID:134358001 - * UMLS:C1285092 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gland] + * UMLS:C1285092 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gland ] * Wikipedia:Gland * WikipediaCategory:Glands * galen:Gland @@ -57,8 +57,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = glandular * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:MIAA_0000021 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002630.md b/md/UBERON/30/UBERON_0002630.md index 17f21d1ceb..47c26bce89 100644 --- a/md/UBERON/30/UBERON_0002630.md +++ b/md/UBERON/30/UBERON_0002630.md @@ -6,19 +6,19 @@ ## Synonyms - * caudate nuclear body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61853] - * corpus (caudatus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61853] - * body of the caudate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:228] - * corpus nuclei caudati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:228[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caudate nuclear body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61853 ] + * corpus (caudatus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61853 ] + * body of the caudate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:228 ] + * corpus nuclei caudati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:228, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:BCd * FMA:61853 * NIF_GrossAnatomy:birnlex_1217 - * NeuroNames:228 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1217] + * NeuroNames:228 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1217 ] * SCTID:314175006 - * UMLS:C0152338 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1217] + * UMLS:C0152338 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1217 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002730.md b/md/UBERON/30/UBERON_0002730.md index 683701a91e..bc17dd2c42 100644 --- a/md/UBERON/30/UBERON_0002730.md +++ b/md/UBERON/30/UBERON_0002730.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002730 * *Label* = regional part of thalamus - * *Definition* = A regional part of brain that is part of a thalamus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a thalamus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1517] - * thalamus segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67705] + * segment of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1517 ] + * thalamus segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67705 ] ## Cross-references @@ -31,9 +31,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:67705 * *[consider](../../er/oboInOwl#consider.md)* = NIF_GrossAnatomy:birnlex_1517 * *[consider](../../er/oboInOwl#consider.md)* = SCTID:119406000 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002730 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_0002830.md b/md/UBERON/30/UBERON_0002830.md index 6dc4965023..2fed085384 100644 --- a/md/UBERON/30/UBERON_0002830.md +++ b/md/UBERON/30/UBERON_0002830.md @@ -6,23 +6,23 @@ ## Synonyms - * anterior part of anterior cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2572] - * anteroventral auditory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72571] - * nucleus magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2572] - * AVCo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2572[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior Ventral Cochlear Nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:723] - * anterior part of the ventral cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:723] - * nucleus cochlearis anteroventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:723[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral cochlear nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:723] - * ventral coclear nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:723] + * anterior part of anterior cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2572 ] + * anteroventral auditory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72571 ] + * nucleus magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2572 ] + * AVCo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2572, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior Ventral Cochlear Nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:723 ] + * anterior part of the ventral cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:723 ] + * nucleus cochlearis anteroventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:723, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral cochlear nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:723 ] + * ventral coclear nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:723 ] ## Cross-references * BAMS:AVCo * FMA:72571 * NIF_GrossAnatomy:birnlex_2572 - * NeuroNames:723 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2572] - * UMLS:C0926557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2572] + * NeuroNames:723 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2572 ] + * UMLS:C0926557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2572 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0002930.md b/md/UBERON/30/UBERON_0002930.md index de25a0da51..5cd4aaeadb 100644 --- a/md/UBERON/30/UBERON_0002930.md +++ b/md/UBERON/30/UBERON_0002930.md @@ -6,21 +6,21 @@ ## Synonyms - * fibrae tectopontinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72505[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tectopontine fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72505] - * tectopontine fibres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72505] - * Thalamic peduncles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tp] - * thalamic peduncles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tp] - * tractus tectopontinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:612[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fibrae tectopontinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72505, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tectopontine fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72505 ] + * tectopontine fibres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72505 ] + * Thalamic peduncles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tp ] + * thalamic peduncles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tp ] + * tractus tectopontinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:612, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:tp * FMA:72505 * NIF_GrossAnatomy:birnlex_701 - * NeuroNames:612 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_701] + * NeuroNames:612 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_701 ] * SCTID:3301002 - * UMLS:C0228403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_701] + * UMLS:C0228403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_701 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003030.md b/md/UBERON/30/UBERON_0003030.md index 09b0464de6..d3772a2c21 100644 --- a/md/UBERON/30/UBERON_0003030.md +++ b/md/UBERON/30/UBERON_0003030.md @@ -6,10 +6,10 @@ ## Synonyms - * nucleus posterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_939] - * PTh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_939[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * caudal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000325] - * posterior nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:362] + * nucleus posterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_939 ] + * PTh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_939, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * caudal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000325 ] + * posterior nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:362 ] ## Cross-references @@ -17,11 +17,11 @@ * BM:Die-Th-Po * FMA:62221 * NIF_GrossAnatomy:birnlex_939 - * NeuroNames:362 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_939] + * NeuroNames:362 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_939 ] * SCTID:424901000 * TAO:0000325 - * UMLS:C0262315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_939] - * UMLS:C0262315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Nucleus_of_the_Thalamus] + * UMLS:C0262315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_939 ] + * UMLS:C0262315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Nucleus_of_the_Thalamus ] * ZFA:0000325 * ncithesaurus:Posterior_Nucleus_of_the_Thalamus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003130.md b/md/UBERON/30/UBERON_0003130.md index 95f8a2e78c..49d938ac5a 100644 --- a/md/UBERON/30/UBERON_0003130.md +++ b/md/UBERON/30/UBERON_0003130.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003130 * *Label* = arthropod sternum - * *Definition* = ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternum_(arthropod)] + * *Definition* = ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternum_(arthropod) ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003230.md b/md/UBERON/30/UBERON_0003230.md index cfe590e10f..629bc1fa3a 100644 --- a/md/UBERON/30/UBERON_0003230.md +++ b/md/UBERON/30/UBERON_0003230.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003230 * *Label* = epithelium of carpal region - * *Definition* = An epithelium that is part of a wrist [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a wrist [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * carpal region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * carpal region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wrist epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wrist epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * carpal region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wrist epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wrist epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003330.md b/md/UBERON/30/UBERON_0003330.md index 01a859f721..cd5c47d654 100644 --- a/md/UBERON/30/UBERON_0003330.md +++ b/md/UBERON/30/UBERON_0003330.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003330 * *Label* = submucosa of rectum - * *Definition* = The submucous layer of the wall of the rectum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002114] + * *Definition* = The submucous layer of the wall of the rectum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002114 ] ## Synonyms - * rectal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15034] - * rectum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tela submucosa recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002114[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * rectal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15034 ] + * rectum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tela submucosa recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002114, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003430.md b/md/UBERON/30/UBERON_0003430.md index 6f18fdd89e..68a2c77cf6 100644 --- a/md/UBERON/30/UBERON_0003430.md +++ b/md/UBERON/30/UBERON_0003430.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003430 * *Label* = neck nerve - * *Definition* = A nerve that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neck (volume) nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neck (volume) nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003530.md b/md/UBERON/30/UBERON_0003530.md index 6072629393..e29285ac65 100644 --- a/md/UBERON/30/UBERON_0003530.md +++ b/md/UBERON/30/UBERON_0003530.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003530 * *Label* = pedal digit skin - * *Definition* = A zone of skin that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of foot skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000650] - * hind limb digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * skin of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit of foot skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000650 ] + * hind limb digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * skin of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:37852 * MA:0000650 * SCTID:181530005 - * UMLS:C1708089 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_Skin] + * UMLS:C1708089 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_Skin ] * ncithesaurus:Foot_Digit_Skin ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003830.md b/md/UBERON/30/UBERON_0003830.md index 2c5c9cf4f1..2b60ead5e1 100644 --- a/md/UBERON/30/UBERON_0003830.md +++ b/md/UBERON/30/UBERON_0003830.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003830 * *Label* = thoracic segment muscle - * *Definition* = A muscle organ that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle organ of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper body muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000561] + * muscle organ of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper body muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000561 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0003930.md b/md/UBERON/30/UBERON_0003930.md index ef7c0f254d..39fcedcb0d 100644 --- a/md/UBERON/30/UBERON_0003930.md +++ b/md/UBERON/30/UBERON_0003930.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003930 * *Label* = atrioventricular canal endocardium - * *Definition* = Endocardium that is part of the atrioventricular canal[ZFA,vetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001616] + * *Definition* = Endocardium that is part of the atrioventricular canal[ZFA,vetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001616 ] ## Synonyms - * AV canal endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * AVC endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * endocardium of AV canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of atrioventricular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * AV canal endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * AVC endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * endocardium of AV canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of atrioventricular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [atrioventricular canal](../../UBERON/87/UBERON_0002087.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004030.md b/md/UBERON/30/UBERON_0004030.md index cad4247853..6b167c36cb 100644 --- a/md/UBERON/30/UBERON_0004030.md +++ b/md/UBERON/30/UBERON_0004030.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004030 * *Label* = aqueous vein - * *Definition* = this vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005207] + * *Definition* = this vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005207 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004130.md b/md/UBERON/30/UBERON_0004130.md index 43fbc34c81..a856fddfb1 100644 --- a/md/UBERON/30/UBERON_0004130.md +++ b/md/UBERON/30/UBERON_0004130.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004130 * *Label* = cerebellar layer - * *Definition* = The cortical cell layer of the cerebellum. It consists of the granular layer, molecular layer, and Purkinje cell layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum] + * *Definition* = The cortical cell layer of the cerebellum. It consists of the granular layer, molecular layer, and Purkinje cell layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum ] ## Synonyms * cell layer of cerebellar cortex - * cytoarchitectural part of the cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_880[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * gray matter layer of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83141] + * cytoarchitectural part of the cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_880, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * gray matter layer of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83141 ] * layer of cerebellar cortex * layer of cerebellum @@ -19,7 +19,7 @@ * MA:0000201 * NIF_GrossAnatomy:birnlex_880 * SCTID:360478008 - * UMLS:C1707522 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum] + * UMLS:C1707522 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum ] * ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004230.md b/md/UBERON/30/UBERON_0004230.md index 700c6a4cc0..7742385e69 100644 --- a/md/UBERON/30/UBERON_0004230.md +++ b/md/UBERON/30/UBERON_0004230.md @@ -3,52 +3,52 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004230 * *Label* = urinary bladder neck smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a neck of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a neck of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bladder neck involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder neck smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of neck of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigonal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67990] - * trigonal muscle of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67990] - * urinary bladder neck involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001699] - * urinary bladder neck non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder neck involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder neck smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of neck of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigonal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67990 ] + * trigonal muscle of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67990 ] + * urinary bladder neck involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001699 ] + * urinary bladder neck non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -65,15 +65,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neck of urinary bladder](../../UBERON/58/UBERON_0001258.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004330.md b/md/UBERON/30/UBERON_0004330.md index cd14885e3c..5f3ad83e42 100644 --- a/md/UBERON/30/UBERON_0004330.md +++ b/md/UBERON/30/UBERON_0004330.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004330 * *Label* = proximal phalanx of manual digit 4 - * *Definition* = A proximal phalanx that is part of a hand digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a hand digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th digit of hand proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4th finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth proximal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23921] - * hand digit 4 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 4th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 4th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23921] - * proximal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23921] + * 4th digit of hand proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4th finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth proximal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23921 ] + * hand digit 4 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 4th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 4th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23921 ] + * proximal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23921 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004430.md b/md/UBERON/30/UBERON_0004430.md index ac77b759b8..ebf2ed460b 100644 --- a/md/UBERON/30/UBERON_0004430.md +++ b/md/UBERON/30/UBERON_0004430.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004430 * *Label* = proximal epiphysis of fourth metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of fourth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42966] - * proximal end of fourth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42966] + * base of fourth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42966 ] + * proximal end of fourth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42966 ] * proximal epiphysis of metatarsal 4 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 4](../../UBERON/53/UBERON_0003653.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004530.md b/md/UBERON/30/UBERON_0004530.md index fdbef84a46..d36d6734da 100644 --- a/md/UBERON/30/UBERON_0004530.md +++ b/md/UBERON/30/UBERON_0004530.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004530 * *Label* = bony projection - * *Definition* = Anatomical projection that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:wd] + * *Definition* = Anatomical projection that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:wd ] ## Synonyms - * bone process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75433] + * bone process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75433 ] * projection of bone ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical projection](../../UBERON/29/UBERON_0004529.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004630.md b/md/UBERON/30/UBERON_0004630.md index 6809856e52..6cbabcb8ab 100644 --- a/md/UBERON/30/UBERON_0004630.md +++ b/md/UBERON/30/UBERON_0004630.md @@ -7,9 +7,9 @@ ## Synonyms - * Fifth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9922] - * T5 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9922] - * fifth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9922] + * Fifth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9922 ] + * T5 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9922 ] + * fifth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9922 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9922 * MA:0001442 * SCTID:181832009 - * UMLS:C0459950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T5_Vertebra] + * UMLS:C0459950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T5_Vertebra ] * ncithesaurus:T5_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004730.md b/md/UBERON/30/UBERON_0004730.md index 97cb33aa72..7f41a765d5 100644 --- a/md/UBERON/30/UBERON_0004730.md +++ b/md/UBERON/30/UBERON_0004730.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004730 * *Label* = instar larval stage - * *Definition* = This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002168] + * *Definition* = This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002168 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004830.md b/md/UBERON/30/UBERON_0004830.md index 2821391bdb..c55540273f 100644 --- a/md/UBERON/30/UBERON_0004830.md +++ b/md/UBERON/30/UBERON_0004830.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004830 * *Label* = respiratory system skeletal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * respiratory system skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * respiratory system skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0004930.md b/md/UBERON/30/UBERON_0004930.md index 956b282226..1bbcfe7f96 100644 --- a/md/UBERON/30/UBERON_0004930.md +++ b/md/UBERON/30/UBERON_0004930.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004930 * *Label* = submucosa of transverse colon - * *Definition* = A submucosa that is part of a transverse colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a transverse colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * transverse colon submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * transverse colon submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [transverse colon](../../UBERON/57/UBERON_0001157.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005030.md b/md/UBERON/30/UBERON_0005030.md index 462c4cded2..f0054531d0 100644 --- a/md/UBERON/30/UBERON_0005030.md +++ b/md/UBERON/30/UBERON_0005030.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005030 * *Label* = mucosa of paranasal sinus - * *Definition* = A mucosa that adjacent_to a paranasal sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that adjacent_to a paranasal sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * paranasal sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * paranasal sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [paranasal sinus](../../UBERON/25/UBERON_0001825.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005130.md b/md/UBERON/30/UBERON_0005130.md index 6dc648132b..64339d6d08 100644 --- a/md/UBERON/30/UBERON_0005130.md +++ b/md/UBERON/30/UBERON_0005130.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005130 * *Label* = metanephric loop of Henle - * *Definition* = The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072236] + * *Definition* = The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072236 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [loop of Henle](../../UBERON/88/UBERON_0001288.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005230.md b/md/UBERON/30/UBERON_0005230.md index 673013ba80..f05cea9f1b 100644 --- a/md/UBERON/30/UBERON_0005230.md +++ b/md/UBERON/30/UBERON_0005230.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005230 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_0005330.md b/md/UBERON/30/UBERON_0005330.md index c8ea8450af..48165d5c89 100644 --- a/md/UBERON/30/UBERON_0005330.md +++ b/md/UBERON/30/UBERON_0005330.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005330 * *Label* = mesonephric nephron epithelium - * *Definition* = The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061241] + * *Definition* = The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061241 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron epithelium](../../UBERON/11/UBERON_0004211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005430.md b/md/UBERON/30/UBERON_0005430.md index 86db6b438c..53f331f2dc 100644 --- a/md/UBERON/30/UBERON_0005430.md +++ b/md/UBERON/30/UBERON_0005430.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005430 * *Label* = ansa cervicalis - * *Definition* = The ansa cervicalis (or ansa hypoglossi in older literature) is a loop of nerves that are part of the cervical plexus. It lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ansa_cervicalis] + * *Definition* = The ansa cervicalis (or ansa hypoglossi in older literature) is a loop of nerves that are part of the cervical plexus. It lies superficial to the internal jugular vein in the carotid sheath. Branches from the ansa cervicalis innervate three of the four infrahyoid muscles, including the sternohyoid muscle, the sternothyroid muscle, and the omohyoid muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ansa_cervicalis ] ## Synonyms - * ansa hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ansa_cervicalis] + * ansa hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ansa_cervicalis ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005630.md b/md/UBERON/30/UBERON_0005630.md index a9a15b0652..da09a7f4ce 100644 --- a/md/UBERON/30/UBERON_0005630.md +++ b/md/UBERON/30/UBERON_0005630.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005630 * *Label* = fetal membrane - * *Definition* = the amnion and chorion which surround and protect a developing fetus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fetal_membrane] + * *Definition* = the amnion and chorion which surround and protect a developing fetus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fetal_membrane ] * *Comment* = todo - merge with extraembryonic membrane? ## Synonyms - * adnexa fetalia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adnexa fetalia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0005730.md b/md/UBERON/30/UBERON_0005730.md index e873370f15..6e65e97755 100644 --- a/md/UBERON/30/UBERON_0005730.md +++ b/md/UBERON/30/UBERON_0005730.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005730 * *Label* = pelvic appendage field - * *Definition* = A limb/fin field that has_potential_to_develop_into a pelvic appendage bud mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb/fin field that has_potential_to_develop_into a pelvic appendage bud mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * pelvic appendage field of lateral plate mesoderm - * pelvic fin field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001454[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pelvic fin field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001454, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pelvic appendage bud mesenchyme](../../UBERON/12/UBERON_0003412.md) and [paired limb/fin field](../../UBERON/32/UBERON_0005732.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Embryonic region that develops into the pelvic fin bud.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006230.md b/md/UBERON/30/UBERON_0006230.md index b4a3477d08..ac20a77cc1 100644 --- a/md/UBERON/30/UBERON_0006230.md +++ b/md/UBERON/30/UBERON_0006230.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006330.md b/md/UBERON/30/UBERON_0006330.md index 5befe8a554..a753585689 100644 --- a/md/UBERON/30/UBERON_0006330.md +++ b/md/UBERON/30/UBERON_0006330.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006330 * *Label* = anterior lingual gland - * *Definition* = Anterior lingual glands (also called apical glands) are deeply placed seromucous glands that are located near the tip of the tongue on each side of the frenulum linguae. They are found on the under surface of the apex of the tongue, and are covered by a bundle of muscular fibers derived from the Styloglossus and Longitudinalis inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_lingual_glands] + * *Definition* = Anterior lingual glands (also called apical glands) are deeply placed seromucous glands that are located near the tip of the tongue on each side of the frenulum linguae. They are found on the under surface of the apex of the tongue, and are covered by a bundle of muscular fibers derived from the Styloglossus and Longitudinalis inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_lingual_glands ] ## Synonyms - * Bauhin's glands: [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_lingual_glands] - * Blandin's glands: [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_lingual_glands] - * Nuhn's glands: [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_lingual_glands] - * anterior lingual salivary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59796] - * lingual salivary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59796] + * Bauhin's glands: [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_lingual_glands ] + * Blandin's glands: [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_lingual_glands ] + * Nuhn's glands: [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_lingual_glands ] + * anterior lingual salivary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59796 ] + * lingual salivary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59796 ] ## Cross-references * FMA:59796 * MA:0002701 * SCTID:362179003 - * UMLS:C0930558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lingual_Salivary_Gland] + * UMLS:C0930558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lingual_Salivary_Gland ] * Wikipedia:Anterior_lingual_glands * ncithesaurus:Lingual_Salivary_Gland @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006430.md b/md/UBERON/30/UBERON_0006430.md index cbbbb2ca19..891d29c470 100644 --- a/md/UBERON/30/UBERON_0006430.md +++ b/md/UBERON/30/UBERON_0006430.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006430 * *Label* = xiphoid cartilage - * *Definition* = A costal cartilage that is part of a xiphoid process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A costal cartilage that is part of a xiphoid process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cartilage of xiphoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32574] + * cartilage of xiphoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32574 ] * xiphoid cartilage - * xiphoid process cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32574] - * ensiform cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] + * xiphoid process cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32574 ] + * ensiform cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [costal cartilage](../../UBERON/36/UBERON_0002236.md) and [part_of](../../BFO/50/BFO_0000050.md) some [xiphoid process](../../UBERON/07/UBERON_0002207.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Distal, cartilaginous portion of the sternum.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006530.md b/md/UBERON/30/UBERON_0006530.md index bc4eb65c94..4f0ab2b2bc 100644 --- a/md/UBERON/30/UBERON_0006530.md +++ b/md/UBERON/30/UBERON_0006530.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006530 * *Label* = seminal fluid - * *Definition* = The fluid portion of the semen, in which the spermatozoa are suspended[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001232] + * *Definition* = The fluid portion of the semen, in which the spermatozoa are suspended[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001232 ] * *Comment* = Usage notes: we follow FMA and make this class a generic superclass of the secretions of different glands (prostate, bulbo-urethreal, seminal vesicle). MA (and ncit) follows a mixture model, where these secretions are part of the seminal fluid // Taxon notes: This term covers a variety of species. Example: In D. melanogaster, seminal fluid proteins affect female receptivity, ovulation, oogenesis, sperm storage, sperm competition and mating plug formation [doi:10.1046/j.1365-2540.2001.00961.x]. Note that ths intology contains a number of subtypes of seminal fluid, defined according to glands (which are more taxonomically restricted) ## Synonyms - * seminal plasma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001232] + * seminal plasma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001232 ] * male genital fluid * male genital secretion - * seminal fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001232] + * seminal fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001232 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006630.md b/md/UBERON/30/UBERON_0006630.md index 1b90c5cbec..61af0981d4 100644 --- a/md/UBERON/30/UBERON_0006630.md +++ b/md/UBERON/30/UBERON_0006630.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006630 * *Label* = left atrium auricular region - * *Definition* = a muscular pouch connected to the left atrium of the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_atrial_appendage] + * *Definition* = a muscular pouch connected to the left atrium of the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_atrial_appendage ] ## Synonyms - * auricula sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * left auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7219] - * left auricula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * left auricular appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * left auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16816] - * auricula sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_atrial_appendage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * left atrial appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001869] + * auricula sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * left auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7219 ] + * left auricula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * left auricular appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * left auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16816 ] + * auricula sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_atrial_appendage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * left atrial appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001869 ] * left atrium appendage - * left auricular appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7219] + * left auricular appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7219 ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrium auricular region](../../UBERON/18/UBERON_0006618.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cardiac atrium](../../UBERON/79/UBERON_0002079.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0006930.md b/md/UBERON/30/UBERON_0006930.md index e4d3ae6fc4..adf4d14467 100644 --- a/md/UBERON/30/UBERON_0006930.md +++ b/md/UBERON/30/UBERON_0006930.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007230.md b/md/UBERON/30/UBERON_0007230.md index a00a054cc8..b4515fcbd4 100644 --- a/md/UBERON/30/UBERON_0007230.md +++ b/md/UBERON/30/UBERON_0007230.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007230 * *Label* = lateral vestibular nucleus - * *Definition* = The lateral vestibular nucleus (Deitersbs nucleus) is the continuation upward and lateralward of the principal nucleus, and in it terminate many of the ascending branches of the vestibular nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_vestibular_nucleus] + * *Definition* = The lateral vestibular nucleus (Deitersbs nucleus) is the continuation upward and lateralward of the principal nucleus, and in it terminate many of the ascending branches of the vestibular nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_vestibular_nucleus ] ## Synonyms - * Deiter's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54614] - * Deiters' nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54614] - * lateral nucleus of Deiters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54614] - * nucleus of Deiters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54614] - * Deiters nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004370] - * nucleus vestibularis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_vestibular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Deiter's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54614 ] + * Deiters' nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54614 ] + * lateral nucleus of Deiters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54614 ] + * nucleus of Deiters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54614 ] + * Deiters nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004370 ] + * nucleus vestibularis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_vestibular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A08.186.211.132.810.428.600.800.800 * NeuroNames:716 * SCTID:280176007 - * UMLS:C0011193 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Vestibular_Nucleus] + * UMLS:C0011193 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Vestibular_Nucleus ] * Wikipedia:Lateral_vestibular_nucleus * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png * ncithesaurus:Lateral_Vestibular_Nucleus @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007330.md b/md/UBERON/30/UBERON_0007330.md index 6264c67cb9..0f719d0a40 100644 --- a/md/UBERON/30/UBERON_0007330.md +++ b/md/UBERON/30/UBERON_0007330.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007330 * *Label* = rhamphotheca - * *Definition* = thin keratinized layer of epidermis projecting from outer surface of beak[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Beak#Rhamphotheca] + * *Definition* = thin keratinized layer of epidermis projecting from outer surface of beak[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Beak#Rhamphotheca ] * *Comment* = Development notes: This covering arises from the Malpighian cells of the bird's epidermis,[9] growing from plates at the base of each mandible[WP] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007530.md b/md/UBERON/30/UBERON_0007530.md index 84b0b5ced6..1d2571f8d8 100644 --- a/md/UBERON/30/UBERON_0007530.md +++ b/md/UBERON/30/UBERON_0007530.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007530 * *Label* = migrating mesenchyme population - * *Definition* = Mesenchymal cells that are migrating. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Mesenchymal cells that are migrating. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] * *Comment* = Editors note: this class will be an important part of the NC reorganization ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [participates in](../../BFO/56/BFO_0000056.md) some [cell migration](../../GO/77/GO_0016477.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003152 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007630.md b/md/UBERON/30/UBERON_0007630.md index b582b3f0ec..a5c238905a 100644 --- a/md/UBERON/30/UBERON_0007630.md +++ b/md/UBERON/30/UBERON_0007630.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007730.md b/md/UBERON/30/UBERON_0007730.md index 1cbbbbe375..302c572914 100644 --- a/md/UBERON/30/UBERON_0007730.md +++ b/md/UBERON/30/UBERON_0007730.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007730 * *Label* = interphalangeal joint of manual digit 3 - * *Definition* = An interphalangeal joint of manus that is part of a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of manus that is part of a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35400] - * interphalangeal joint of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35400] - * interphalangeal joint of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35400[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35400 ] + * interphalangeal joint of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35400 ] + * interphalangeal joint of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35400, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of manus](../../UBERON/22/UBERON_0007722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0007830.md b/md/UBERON/30/UBERON_0007830.md index fbf50b56a7..bd0b1fc140 100644 --- a/md/UBERON/30/UBERON_0007830.md +++ b/md/UBERON/30/UBERON_0007830.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007830 * *Label* = pelvic girdle bone/zone - * *Definition* = A bone element or fused bone that is part of pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone element or fused bone that is part of pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone. Editor note: check sacrum, coccyx (MA does NOT include these) ## Synonyms * bone of pelvic girdle - * pelvic girdle bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000293] + * pelvic girdle bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000293 ] ## Cross-references * MA:0000293 * SCTID:426214007 - * UMLS:C0030786 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pelvic_Bone] + * UMLS:C0030786 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pelvic_Bone ] * ncithesaurus:Pelvic_Bone ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle skeleton](../../UBERON/32/UBERON_0007832.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0008230.md b/md/UBERON/30/UBERON_0008230.md index 8a884b9cfd..bca18512b7 100644 --- a/md/UBERON/30/UBERON_0008230.md +++ b/md/UBERON/30/UBERON_0008230.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008230 * *Label* = tibialis - * *Definition* = Either of two muscles of the calf of the leg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/] + * *Definition* = Either of two muscles of the calf of the leg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/ ] ## Synonyms - * tibialis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002425] + * tibialis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002425 ] ## Cross-references * BTO:0000864 * MA:0002425 - * UMLS:C1710422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibialis] + * UMLS:C1710422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibialis ] * ncithesaurus:Tibialis ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0008330.md b/md/UBERON/30/UBERON_0008330.md index 2f5a1e6912..8699f49f74 100644 --- a/md/UBERON/30/UBERON_0008330.md +++ b/md/UBERON/30/UBERON_0008330.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008330 * *Label* = vestibulum vaginae - * *Definition* = The space posterior to the glans clitoridis and between the labia minora, containing the openings of the vagina, urethra, and ducts of the greater vestibular glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003145[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vulval_vestibule] + * *Definition* = The space posterior to the glans clitoridis and between the labia minora, containing the openings of the vagina, urethra, and ducts of the greater vestibular glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003145, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vulval_vestibule ] ## Synonyms - * vagina vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011848] - * vaginal vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19970] - * vestibule of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19970] + * vagina vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011848 ] + * vaginal vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19970 ] + * vestibule of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19970 ] * vestibulum pudendi * introitus - * introitus of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] - * vagina opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001142] - * vaginal introitus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003145] - * vaginal opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001142] - * vestibule of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003145] - * vestibulum pudendi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003145] - * vestibulum vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vulval_vestibule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * introitus of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] + * vagina opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001142 ] + * vaginal introitus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003145 ] + * vaginal opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001142 ] + * vestibule of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003145 ] + * vestibulum pudendi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003145 ] + * vestibulum vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vulval_vestibule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0008430.md b/md/UBERON/30/UBERON_0008430.md index ae1de62edb..d4ac3f9901 100644 --- a/md/UBERON/30/UBERON_0008430.md +++ b/md/UBERON/30/UBERON_0008430.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008430 * *Label* = lumbar vertebral foramen - * *Definition* = A vertebral foramen that is part of a lumbar vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vertebral foramen that is part of a lumbar vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) and [vertebral foramen](../../UBERON/31/UBERON_0001131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0008830.md b/md/UBERON/30/UBERON_0008830.md index 6a5993511b..72f12a72dc 100644 --- a/md/UBERON/30/UBERON_0008830.md +++ b/md/UBERON/30/UBERON_0008830.md @@ -6,15 +6,15 @@ ## Synonyms - * inner granular layer of cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_790] + * inner granular layer of cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_790 ] ## Cross-references * MA:0000995 * NIF_GrossAnatomy:birnlex_790 - * UMLS:C0228471 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_790] - * UMLS:C1289476 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_790] - * UMLS:C1708540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum] + * UMLS:C0228471 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_790 ] + * UMLS:C1289476 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_790 ] + * UMLS:C1708540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum ] * ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0008930.md b/md/UBERON/30/UBERON_0008930.md index b4f18a7467..775e2863b0 100644 --- a/md/UBERON/30/UBERON_0008930.md +++ b/md/UBERON/30/UBERON_0008930.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008930 * *Label* = somatosensory cortex - * *Definition* = Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.730.885.213.670.675] + * *Definition* = Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.730.885.213.670.675 ] * *Comment* = TODO - add layers ## Synonyms - * somatic sensory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004353] - * somatosensory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004353] - * somatosensory areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SS] - * somesthetic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004353] + * somatic sensory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004353 ] + * somatosensory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004353 ] + * somatosensory areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SS ] + * somesthetic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004353 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0009030.md b/md/UBERON/30/UBERON_0009030.md index 27ae61f27a..032da056e1 100644 --- a/md/UBERON/30/UBERON_0009030.md +++ b/md/UBERON/30/UBERON_0009030.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009030 * *Label* = left pulmonary vein - * *Definition* = Vein that drains left lung and returns blood to the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Vein that drains left lung and returns blood to the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -12,7 +12,7 @@ * MA:0002207 * SCTID:304057004 - * UMLS:C0226670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Pulmonary_Vein] + * UMLS:C0226670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Pulmonary_Vein ] * ncithesaurus:Left_Pulmonary_Vein ## Subsets @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [pulmonary vein](../../UBERON/16/UBERON_0002016.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vein that returns oxygenated blood from the left lung to the left atrium of the heart[ncithesaurus:Left_Pulmonary_Vein]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0009130.md b/md/UBERON/30/UBERON_0009130.md index f0192c265f..d45e57d430 100644 --- a/md/UBERON/30/UBERON_0009130.md +++ b/md/UBERON/30/UBERON_0009130.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0009630.md b/md/UBERON/30/UBERON_0009630.md index 66c6517d9b..01c921d809 100644 --- a/md/UBERON/30/UBERON_0009630.md +++ b/md/UBERON/30/UBERON_0009630.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009630 * *Label* = root of thoracic nerve - * *Definition* = A spinal nerve root that is part of a thoracic nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal nerve root that is part of a thoracic nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve root part of thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF:NIF] - * thoracic nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14064] - * thoracic neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14064] + * nerve root part of thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF:NIF ] + * thoracic nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14064 ] + * thoracic neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14064 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic nerve](../../UBERON/26/UBERON_0003726.md) and [spinal nerve root](../../UBERON/23/UBERON_0009623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0010030.md b/md/UBERON/30/UBERON_0010030.md index 53776a57bb..6882f6c3db 100644 --- a/md/UBERON/30/UBERON_0010030.md +++ b/md/UBERON/30/UBERON_0010030.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0010130.md b/md/UBERON/30/UBERON_0010130.md index 1debbc1869..3bfd7cd802 100644 --- a/md/UBERON/30/UBERON_0010130.md +++ b/md/UBERON/30/UBERON_0010130.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010130 * *Label* = autopod plate - * *Definition* = the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. manus, pes, paw) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004576[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3519614&group_id=76834&atid=1109502] + * *Definition* = the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. manus, pes, paw) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004576, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3519614&group_id=76834&atid=1109502 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [embryonic structure](../../UBERON/50/UBERON_0002050.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [autopod region](../../UBERON/70/UBERON_0002470.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0010230.md b/md/UBERON/30/UBERON_0010230.md index 3e396d5cd6..4e937fc8c2 100644 --- a/md/UBERON/30/UBERON_0010230.md +++ b/md/UBERON/30/UBERON_0010230.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010230 * *Label* = eyeball of camera-type eye - * *Definition* = The camera-type eye apart from its appendages/adnexa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Globe_(human_eye)] + * *Definition* = The camera-type eye apart from its appendages/adnexa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Globe_(human_eye) ] * *Comment* = See notes for camera-type eye ## Synonyms * bulbus oculi - * eye globe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001616] - * eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12513] - * eye [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * globe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0100886[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000283] + * eye globe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001616 ] + * eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12513 ] + * eye [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * globe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0100886, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000283 ] ## Cross-references @@ -41,8 +41,9 @@ * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_264089 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0010330.md b/md/UBERON/30/UBERON_0010330.md index 8e96880b3f..62fffc2d69 100644 --- a/md/UBERON/30/UBERON_0010330.md +++ b/md/UBERON/30/UBERON_0010330.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010330 * *Label* = eyelid mesenchyme - * *Definition* = Mesenchyme that is part of a eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0010930.md b/md/UBERON/30/UBERON_0010930.md index 5a27fcca45..8b096bc844 100644 --- a/md/UBERON/30/UBERON_0010930.md +++ b/md/UBERON/30/UBERON_0010930.md @@ -30,8 +30,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the principal muscles used in swallowing.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0011130.md b/md/UBERON/30/UBERON_0011130.md index f2e3cd1756..653e237ab1 100644 --- a/md/UBERON/30/UBERON_0011130.md +++ b/md/UBERON/30/UBERON_0011130.md @@ -6,7 +6,7 @@ ## Synonyms - * temporo-mandibular joint primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18714] + * temporo-mandibular joint primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18714 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0011630.md b/md/UBERON/30/UBERON_0011630.md index 3876ed7415..b7b1f7ee6a 100644 --- a/md/UBERON/30/UBERON_0011630.md +++ b/md/UBERON/30/UBERON_0011630.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0011830.md b/md/UBERON/30/UBERON_0011830.md index 86c45899a2..bddf91e95b 100644 --- a/md/UBERON/30/UBERON_0011830.md +++ b/md/UBERON/30/UBERON_0011830.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011830 * *Label* = duct of lesser vestibular gland - * *Definition* = A duct that is part of a minor vestibular gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a minor vestibular gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lesser vestibular gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20094] + * lesser vestibular gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20094 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [minor vestibular gland](../../UBERON/61/UBERON_0000461.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011830 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0011930.md b/md/UBERON/30/UBERON_0011930.md index de71ae7f0c..be8f7cbdbc 100644 --- a/md/UBERON/30/UBERON_0011930.md +++ b/md/UBERON/30/UBERON_0011930.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011930 * *Label* = preganglionic parasympathetic fiber - * *Definition* = A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008311] + * *Definition* = A cholinergic axonal fibers projecting from the CNS to a parasympathetic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008311 ] ## Synonyms - * parasympathetic preganglionic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008311] + * parasympathetic preganglionic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008311 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [parasympathetic nervous system](../../UBERON/11/UBERON_0000011.md) and [preganglionic autonomic fiber](../../UBERON/25/UBERON_0011925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0012130.md b/md/UBERON/30/UBERON_0012130.md index 96e7d54575..9760c6fa39 100644 --- a/md/UBERON/30/UBERON_0012130.md +++ b/md/UBERON/30/UBERON_0012130.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012130 * *Label* = olecranon fossa - * *Definition* = Above the back part of the trochlea of the humerus is a deep triangular depression, the olecranon fossa, in which the summit of the olecranon is received in extension of the forearm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olecranon_fossa] + * *Definition* = Above the back part of the trochlea of the humerus is a deep triangular depression, the olecranon fossa, in which the summit of the olecranon is received in extension of the forearm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olecranon_fossa ] * *Comment* = a deep evacuation in the bone, into which the anconeal process of the ulna passes when the elbow joint is extended ## Synonyms - * fossa olecrani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olecranon_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fossa olecrani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olecranon_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012130 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0012330.md b/md/UBERON/30/UBERON_0012330.md index 60818f8ab3..de0c5864b5 100644 --- a/md/UBERON/30/UBERON_0012330.md +++ b/md/UBERON/30/UBERON_0012330.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012330 * *Label* = nasal-associated lymphoid tissue - * *Definition* = The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Nasal-Associated_Lymphoid_Tissue] + * *Definition* = The lymphocytic cell population present in the mucosa of the nasopharyngeal duct of some animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Nasal-Associated_Lymphoid_Tissue ] ## Synonyms - * naso-pharyngeal lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79771] - * NALT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation] + * naso-pharyngeal lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79771 ] + * NALT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucosa-associated_lymphoid_tissue#Categorisation ] ## Cross-references * FMA:79771 - * UMLS:C2698431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal-Associated_Lymphoid_Tissue] + * UMLS:C2698431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal-Associated_Lymphoid_Tissue ] * ncithesaurus:Nasal-Associated_Lymphoid_Tissue ## Subsets @@ -24,19 +24,20 @@ * [gut-associated lymphoid tissue](../../UBERON/62/UBERON_0001962.md) * [endoderm-derived structure](../../UBERON/19/UBERON_0004119.md) * [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mucosa of nasopharynx](../../UBERON/22/UBERON_0005022.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa-associated lymphoid tissue](../../UBERON/61/UBERON_0001961.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012330 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0012430.md b/md/UBERON/30/UBERON_0012430.md index 631bbbb299..b063f251f4 100644 --- a/md/UBERON/30/UBERON_0012430.md +++ b/md/UBERON/30/UBERON_0012430.md @@ -6,7 +6,7 @@ ## Synonyms - * fibrous layer of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58102] + * fibrous layer of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58102 ] * tunica fibrosa ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0013230.md b/md/UBERON/30/UBERON_0013230.md index 4f1ac39259..ea9b3997e1 100644 --- a/md/UBERON/30/UBERON_0013230.md +++ b/md/UBERON/30/UBERON_0013230.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013230 * *Label* = gland of nictitating membrane - * *Definition* = A gland producing tears in a third eyelid in the corner of each eye, as seen in animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Gland_of_the_Third_Eyelid] + * *Definition* = A gland producing tears in a third eyelid in the corner of each eye, as seen in animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Gland_of_the_Third_Eyelid ] * *Comment* = Consider merging with Harderian ## Synonyms - * gland of the third eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Gland_of_the_Third_Eyelid] + * gland of the third eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Gland_of_the_Third_Eyelid ] * nictitans gland ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nictitating membrane](../../UBERON/07/UBERON_0010207.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013230 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0013630.md b/md/UBERON/30/UBERON_0013630.md index 18ae27f2d5..c358f23f8a 100644 --- a/md/UBERON/30/UBERON_0013630.md +++ b/md/UBERON/30/UBERON_0013630.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013630 * *Label* = short bone - * *Definition* = Short bones are designated as those bones that are as wide as they are long. Their primary function is to provide support and stability with little to no movement. They are one of five types of bones: long, short, flat, irregular and sesamoid. Examples of these bones include the tarsals in the foot and the carpals in the hand. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Short_bone] + * *Definition* = Short bones are designated as those bones that are as wide as they are long. Their primary function is to provide support and stability with little to no movement. They are one of five types of bones: long, short, flat, irregular and sesamoid. Examples of these bones include the tarsals in the foot and the carpals in the hand. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Short_bone ] * *Comment* = todo - make subclass links ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0013730.md b/md/UBERON/30/UBERON_0013730.md index d76591ffa3..693e0ea190 100644 --- a/md/UBERON/30/UBERON_0013730.md +++ b/md/UBERON/30/UBERON_0013730.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013730 * *Label* = mycetome - * *Definition* = A specialized organ that is linked to the gut in beetles and host to a symbiotic yeast. The yeast cells assist in the digestion of less nutritious foods, supply needed B-vitamins and sterols, and provide resistance to certain toxins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:01000166[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PLB:plb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lasioderma_serricorne] + * *Definition* = A specialized organ that is linked to the gut in beetles and host to a symbiotic yeast. The yeast cells assist in the digestion of less nutritious foods, supply needed B-vitamins and sterols, and provide resistance to certain toxins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:01000166, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PLB:plb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lasioderma_serricorne ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = either of a pair of organs in an insect (as a true bug) that consist of a cellular mass of mycetocytes and are located one in either fat body. a cell in various insects (as most true bugs) of a type that contains unicellular and prob. symbiotic fungi and is usu. clustered with others of its kind into paired mycetomes. . - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0014430.md b/md/UBERON/30/UBERON_0014430.md index a0bcd7f2c3..91f8c9ceae 100644 --- a/md/UBERON/30/UBERON_0014430.md +++ b/md/UBERON/30/UBERON_0014430.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014430 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0014530.md b/md/UBERON/30/UBERON_0014530.md index a250bf60bb..66830eca0c 100644 --- a/md/UBERON/30/UBERON_0014530.md +++ b/md/UBERON/30/UBERON_0014530.md @@ -6,7 +6,7 @@ ## Synonyms - * neuraxis lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83856] + * neuraxis lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83856 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014530 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0014630.md b/md/UBERON/30/UBERON_0014630.md index c77f03eeaa..693fe34e7b 100644 --- a/md/UBERON/30/UBERON_0014630.md +++ b/md/UBERON/30/UBERON_0014630.md @@ -6,17 +6,17 @@ ## Synonyms - * anterior grey commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77038] - * commissura grisea anterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * spinal cord anterior gray commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2676[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * ventral grey commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77038] + * anterior grey commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77038 ] + * commissura grisea anterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * spinal cord anterior gray commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2676, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * ventral grey commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77038 ] ## Cross-references * FMA:77038 * NIF_GrossAnatomy:birnlex_2676 * SCTID:88806005 - * UMLS:C0228572 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2676] + * UMLS:C0228572 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2676 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014630 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0014730.md b/md/UBERON/30/UBERON_0014730.md index 6fb42cc706..575ccbc7b5 100644 --- a/md/UBERON/30/UBERON_0014730.md +++ b/md/UBERON/30/UBERON_0014730.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014730 * *Label* = osteon - * *Definition* = A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A10.165.265.507] + * *Definition* = A circular structural unit of bone tissue. It consists of a central hole, the Haversian canal through which blood vessels run, surrounded by concentric rings, called lamellae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A10.165.265.507 ] ## Synonyms - * haversian system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32693] - * osteonum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32693] - * bone matrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osteon] - * haversian canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A10.165.265.507] - * haversian system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A10.165.265.507] - * haversian system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osteon] - * haversian systems [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osteon] - * volkmann%27s vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osteon] + * haversian system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32693 ] + * osteonum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32693 ] + * bone matrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osteon ] + * haversian canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A10.165.265.507 ] + * haversian system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A10.165.265.507 ] + * haversian system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osteon ] + * haversian systems [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osteon ] + * volkmann%27s vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osteon ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014730 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0014930.md b/md/UBERON/30/UBERON_0014930.md index f71e6e5518..83db224a80 100644 --- a/md/UBERON/30/UBERON_0014930.md +++ b/md/UBERON/30/UBERON_0014930.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014930 * *Label* = perivascular space - * *Definition* = The space between a blood vessel and the pia mater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Perivascular_Space] + * *Definition* = The space between a blood vessel and the pia mater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Perivascular_Space ] * *Comment* = VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brains arteries, as no leptomeningeal layers surround the brains veins[WP] ## Synonyms - * Virchow-Robin space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Virchow-Robin_space] + * Virchow-Robin space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Virchow-Robin_space ] * perivascular region - * VRS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Virchow-Robin_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * perivascular spaces [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * VRS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Virchow-Robin_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * perivascular spaces [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pia mater](../../UBERON/61/UBERON_0002361.md) and [anatomical space](../../UBERON/64/UBERON_0000464.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014930 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_0015030.md b/md/UBERON/30/UBERON_0015030.md index 6d15793ce8..17b4c62bd5 100644 --- a/md/UBERON/30/UBERON_0015030.md +++ b/md/UBERON/30/UBERON_0015030.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015030 * *Label* = pedal digit phalanx endochondral element - * *Definition* = A pedal digit phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit phalanx cartilage element](../../UBERON/85/UBERON_0010685.md)or[pedal digit phalanx pre-cartilage condensation](../../UBERON/85/UBERON_0010585.md)or[phalanx of pes](../../UBERON/49/UBERON_0001449.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015030 + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000230.md b/md/UBERON/30/UBERON_2000230.md index 1b27d06a93..1846ae7fe9 100644 --- a/md/UBERON/30/UBERON_2000230.md +++ b/md/UBERON/30/UBERON_2000230.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000430.md b/md/UBERON/30/UBERON_2000430.md index d464c815ca..2d3fcadd66 100644 --- a/md/UBERON/30/UBERON_2000430.md +++ b/md/UBERON/30/UBERON_2000430.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000530.md b/md/UBERON/30/UBERON_2000530.md index e77d787b2c..a6f26a8728 100644 --- a/md/UBERON/30/UBERON_2000530.md +++ b/md/UBERON/30/UBERON_2000530.md @@ -6,8 +6,8 @@ ## Synonyms - * utricular otolith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000530] - * utriculith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000530] + * utricular otolith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000530 ] + * utriculith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000530 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000630.md b/md/UBERON/30/UBERON_2000630.md index 17c6f8afb4..f30c93757a 100644 --- a/md/UBERON/30/UBERON_2000630.md +++ b/md/UBERON/30/UBERON_2000630.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000730.md b/md/UBERON/30/UBERON_2000730.md index 72daa92bd6..594afa1704 100644 --- a/md/UBERON/30/UBERON_2000730.md +++ b/md/UBERON/30/UBERON_2000730.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000730 * *Label* = somite 23 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 23 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000830.md b/md/UBERON/30/UBERON_2000830.md index 8fd2b30f28..c0e1383d16 100644 --- a/md/UBERON/30/UBERON_2000830.md +++ b/md/UBERON/30/UBERON_2000830.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000830 * *Label* = sclerotome somite 14 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2000930.md b/md/UBERON/30/UBERON_2000930.md index c4b7019c3f..67cb3961d1 100644 --- a/md/UBERON/30/UBERON_2000930.md +++ b/md/UBERON/30/UBERON_2000930.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000930 * *Label* = myotome somite 24 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001030.md b/md/UBERON/30/UBERON_2001030.md index 3b1140408e..fcd6ffeaef 100644 --- a/md/UBERON/30/UBERON_2001030.md +++ b/md/UBERON/30/UBERON_2001030.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001030 * *Label* = epaxial region somite 21 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001230.md b/md/UBERON/30/UBERON_2001230.md index 9cdf32ef2e..3e7b0568e2 100644 --- a/md/UBERON/30/UBERON_2001230.md +++ b/md/UBERON/30/UBERON_2001230.md @@ -6,9 +6,9 @@ ## Synonyms - * branchial arch 4 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001230] - * gill arch 4 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001230] - * visceral arch 6 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001230] + * branchial arch 4 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001230 ] + * gill arch 4 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001230 ] + * visceral arch 6 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001230 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001430.md b/md/UBERON/30/UBERON_2001430.md index 54213d19b4..19d68b38c5 100644 --- a/md/UBERON/30/UBERON_2001430.md +++ b/md/UBERON/30/UBERON_2001430.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001430 * *Label* = pneumatic duct - * *Definition* = A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001530.md b/md/UBERON/30/UBERON_2001530.md index ac79d710eb..ad02b9d049 100644 --- a/md/UBERON/30/UBERON_2001530.md +++ b/md/UBERON/30/UBERON_2001530.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001530 * *Label* = epibranchial 2 cartilage - * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001630.md b/md/UBERON/30/UBERON_2001630.md index bde79b372d..0b482fe9fe 100644 --- a/md/UBERON/30/UBERON_2001630.md +++ b/md/UBERON/30/UBERON_2001630.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001630 * *Label* = supratemporal sensory canal - * *Definition* = Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * occipital canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001630] - * occipital sensory canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001630] - * supratemporal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001630] + * occipital canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001630 ] + * occipital sensory canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001630 ] + * supratemporal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001630 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2001618 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001730.md b/md/UBERON/30/UBERON_2001730.md index 366d86b4b0..dfda239259 100644 --- a/md/UBERON/30/UBERON_2001730.md +++ b/md/UBERON/30/UBERON_2001730.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001730 * *Label* = caudal principal ray 18 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 17. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 17. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001830.md b/md/UBERON/30/UBERON_2001830.md index 62a1f1e6d4..cf71884f39 100644 --- a/md/UBERON/30/UBERON_2001830.md +++ b/md/UBERON/30/UBERON_2001830.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001830 * *Label* = caudal fin ventral procurrent ray - * *Definition* = Caudal procurrent ray that forms part of the anterior ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or a epural or an uroneural (dorsal series) and with a hemal spine of a preural vertebra (ventral series). A caudal procurrent ray is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_2008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal procurrent ray that forms part of the anterior ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or a epural or an uroneural (dorsal series) and with a hemal spine of a preural vertebra (ventral series). A caudal procurrent ray is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_2008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * precurrent ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001830] - * ventral caudal procurrent ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001830] - * ventral procurrent caudal-fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001830] - * ventral procurrent ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001830] - * rudimentary ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001830] + * precurrent ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001830 ] + * ventral caudal procurrent ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001830 ] + * ventral procurrent caudal-fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001830 ] + * ventral procurrent ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001830 ] + * rudimentary ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001830 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2005263 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2001930.md b/md/UBERON/30/UBERON_2001930.md index f0f8343994..dd372cb0b9 100644 --- a/md/UBERON/30/UBERON_2001930.md +++ b/md/UBERON/30/UBERON_2001930.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001930 * *Label* = accessory vomerine tooth plate - * *Definition* = Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Accessory vomerine tooth plate is not synonymous with dermopalatine tooth plate, palatine tooth plate, or pterygoid tooth plate. ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2002030.md b/md/UBERON/30/UBERON_2002030.md index c0c336e3a2..04d95d0942 100644 --- a/md/UBERON/30/UBERON_2002030.md +++ b/md/UBERON/30/UBERON_2002030.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002030 * *Label* = ventral keel of coracoid - * *Definition* = Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2002130.md b/md/UBERON/30/UBERON_2002130.md index d434b8f944..a68f43d5f9 100644 --- a/md/UBERON/30/UBERON_2002130.md +++ b/md/UBERON/30/UBERON_2002130.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002130 * *Label* = caudal appendage - * *Definition* = Multi-tissue structure that is region of the body posterior to the last anal-fin ray. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Multi-tissue structure that is region of the body posterior to the last anal-fin ray. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones. Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. ## Synonyms - * caudal filament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002130] + * caudal filament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002130 ] ## Cross-references @@ -33,7 +33,9 @@ Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS O * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2005030.md b/md/UBERON/30/UBERON_2005030.md index e304e87474..3f879e3ac5 100644 --- a/md/UBERON/30/UBERON_2005030.md +++ b/md/UBERON/30/UBERON_2005030.md @@ -6,7 +6,7 @@ ## Synonyms - * DCV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005030] + * DCV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005030 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_2005230.md b/md/UBERON/30/UBERON_2005230.md index 4c6bb10b76..537cb59e70 100644 --- a/md/UBERON/30/UBERON_2005230.md +++ b/md/UBERON/30/UBERON_2005230.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005230 * *Label* = obsolete CoBL - * *Definition* = A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-010807-17] + * *Definition* = A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-010807-17 ] * *Comment* = incorrectly generalized to teleosts so being obsoleted. ## Synonyms - * commissural bifurcating longitudinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005230] + * commissural bifurcating longitudinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005230 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_2007030.md b/md/UBERON/30/UBERON_2007030.md index 2a6620ac8c..43c5723706 100644 --- a/md/UBERON/30/UBERON_2007030.md +++ b/md/UBERON/30/UBERON_2007030.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_3000730.md b/md/UBERON/30/UBERON_3000730.md index 3d397c7c0e..9612de49dc 100644 --- a/md/UBERON/30/UBERON_3000730.md +++ b/md/UBERON/30/UBERON_3000730.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000730 * *Label* = foramen nutritium - * *Definition* = Opening on the lateral side of the vertebra for the passage of blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the lateral side of the vertebra for the passage of blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_3000830.md b/md/UBERON/30/UBERON_3000830.md index f59e53c03c..05b1f252ff 100644 --- a/md/UBERON/30/UBERON_3000830.md +++ b/md/UBERON/30/UBERON_3000830.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000830 * *Label* = margo vertebralis - * *Definition* = Medial margin of the suprascapula, which lies dorsal to the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Medial margin of the suprascapula, which lies dorsal to the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_3010130.md b/md/UBERON/30/UBERON_3010130.md index b313886c6a..aa5f072786 100644 --- a/md/UBERON/30/UBERON_3010130.md +++ b/md/UBERON/30/UBERON_3010130.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010130 * *Label* = taenia tecti transversalis - * *Definition* = Cartilaginous connection that partitions frontoparietal fenestra into anterior and posterior regions. Often persists form larva into adults. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cartilaginous connection that partitions frontoparietal fenestra into anterior and posterior regions. Often persists form larva into adults. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_3010330.md b/md/UBERON/30/UBERON_3010330.md index 59eda1d531..67d028afe2 100644 --- a/md/UBERON/30/UBERON_3010330.md +++ b/md/UBERON/30/UBERON_3010330.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_3010530.md b/md/UBERON/30/UBERON_3010530.md index 7124c7fd5a..e1fac3b356 100644 --- a/md/UBERON/30/UBERON_3010530.md +++ b/md/UBERON/30/UBERON_3010530.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010530 * *Label* = obsolete mesorchium - * *Definition* = A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011879 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/30/UBERON_3010730.md b/md/UBERON/30/UBERON_3010730.md index 59d9384c6f..5f7b2d3096 100644 --- a/md/UBERON/30/UBERON_3010730.md +++ b/md/UBERON/30/UBERON_3010730.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_3010830.md b/md/UBERON/30/UBERON_3010830.md index 6db7741092..e8826f4cf7 100644 --- a/md/UBERON/30/UBERON_3010830.md +++ b/md/UBERON/30/UBERON_3010830.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_4000030.md b/md/UBERON/30/UBERON_4000030.md index e575591e69..75f250eb86 100644 --- a/md/UBERON/30/UBERON_4000030.md +++ b/md/UBERON/30/UBERON_4000030.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000030 * *Label* = oropharyngeal papilla - * *Definition* = Odontogenic papilla located along the jaws or pharyngeal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontogenic papilla located along the jaws or pharyngeal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * oropharyngeal dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * oropharyngeal dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_4200030.md b/md/UBERON/30/UBERON_4200030.md index 28da2d5bfe..cec76b9074 100644 --- a/md/UBERON/30/UBERON_4200030.md +++ b/md/UBERON/30/UBERON_4200030.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_4200130.md b/md/UBERON/30/UBERON_4200130.md index db25a4d31c..a31b7b03c7 100644 --- a/md/UBERON/30/UBERON_4200130.md +++ b/md/UBERON/30/UBERON_4200130.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/30/UBERON_4300030.md b/md/UBERON/30/UBERON_4300030.md index 505e5d515d..7af1c8329f 100644 --- a/md/UBERON/30/UBERON_4300030.md +++ b/md/UBERON/30/UBERON_4300030.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0000031.md b/md/UBERON/31/UBERON_0000031.md index 323a8ab32b..f0225eb1d3 100644 --- a/md/UBERON/31/UBERON_0000031.md +++ b/md/UBERON/31/UBERON_0000031.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000031 * *Label* = lamina propria of trachea - * *Definition* = A lamina propria that is part of a respiratory airway. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a respiratory airway. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lamina propria mucosa of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria mucosa of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trachea lamina propria - * trachea lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * trachea lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tracheal lamina propria - * windpipe lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * windpipe lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001858 - * UMLS:C1710457 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Lamina_Propria] + * UMLS:C1710457 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Lamina_Propria ] * ncithesaurus:Trachea_Lamina_Propria ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory airway](../../UBERON/05/UBERON_0001005.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0000331.md b/md/UBERON/31/UBERON_0000331.md index 6697d5bac7..efbb2488e6 100644 --- a/md/UBERON/31/UBERON_0000331.md +++ b/md/UBERON/31/UBERON_0000331.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000331 * *Label* = ileal mucosa - * *Definition* = A mucosa that is part of a ileum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a ileum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ileal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14956] - * ileum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14956] - * ileum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ileum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ileum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ileum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ileal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14956 ] + * ileum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14956 ] + * ileum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ileum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ileum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ileum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0000431.md b/md/UBERON/31/UBERON_0000431.md index 4695538675..d79e96f197 100644 --- a/md/UBERON/31/UBERON_0000431.md +++ b/md/UBERON/31/UBERON_0000431.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000431 * *Label* = ventral medial complex of thalamus - * *Definition* = A group of nuclei located in the medial portion of the ventral thalamic nuclei. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002470] + * *Definition* = A group of nuclei located in the medial portion of the ventral thalamic nuclei. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002470 ] ## Synonyms - * ventral medial complex of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77795] - * ventral medial nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77795] - * nuclei ventrales mediales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002470[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of ventral medial nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77795] + * ventral medial complex of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77795 ] + * ventral medial nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77795 ] + * nuclei ventrales mediales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002470, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of ventral medial nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77795 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0000931.md b/md/UBERON/31/UBERON_0000931.md index 0f4e51b9f3..5e9ec91042 100644 --- a/md/UBERON/31/UBERON_0000931.md +++ b/md/UBERON/31/UBERON_0000931.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000931 * *Label* = proctodeum - * *Definition* = Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proctodeum] + * *Definition* = Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proctodeum ] * *Comment* = removed WBbt:0006795 - junction between the alimentary and genital tracts in the male. ## Synonyms * embryonic proctodaeum * proctodaeum - * anal pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000139] + * anal pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000139 ] ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:25043 * FBbt:00000440 * TAO:0000066 - * UMLS:C0231054 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Proctodeum] + * UMLS:C0231054 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Proctodeum ] * VHOG:0000139 * Wikipedia:Proctodeum * XAO:0001019 @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = proctodeal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001031.md b/md/UBERON/31/UBERON_0001031.md index e737573cbe..4c2b53c4c0 100644 --- a/md/UBERON/31/UBERON_0001031.md +++ b/md/UBERON/31/UBERON_0001031.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001031 * *Label* = neurilemma - * *Definition* = thin membranous sheath around a nerve fiber[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurilemma[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/neurolemma] + * *Definition* = thin membranous sheath around a nerve fiber[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurilemma, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/neurolemma ] * *Comment* = FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS ## Synonyms * neurolemma * sheath of Schwann - * Schwann's membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003048] - * endoneural membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003048] + * Schwann's membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003048 ] + * endoneural membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003048 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:62976 * GAID:730 * MESH:A08.561.600 - * UMLS:C0027807 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sheath_of_Schwann] + * UMLS:C0027807 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sheath_of_Schwann ] * Wikipedia:Neurilemma * http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Gray631.png/200px-Gray631.png * ncithesaurus:Sheath_of_Schwann @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001131.md b/md/UBERON/31/UBERON_0001131.md index 5f27de66c3..1d15d74997 100644 --- a/md/UBERON/31/UBERON_0001131.md +++ b/md/UBERON/31/UBERON_0001131.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001131 * *Label* = vertebral foramen - * *Definition* = In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_foramen] + * *Definition* = In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_foramen ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * vertebra neural canal - * foramen vertebrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_foramen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * foramen vertebrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_foramen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Opening on the vertebra for a spinal nerve as it emerges from the spinal canal.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001231.md b/md/UBERON/31/UBERON_0001231.md index 756d6fcc1f..601d65225e 100644 --- a/md/UBERON/31/UBERON_0001231.md +++ b/md/UBERON/31/UBERON_0001231.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001231 * *Label* = nephron tubule - * *Definition* = An epithelial tube that is part of the nephron, the functional part of the kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072078[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_tubule] + * *Definition* = An epithelial tube that is part of the nephron, the functional part of the kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072078, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_tubule ] * *Comment* = note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA ## Synonyms - * kidney tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:433] + * kidney tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:433 ] * tubulus renalis * renal tubule - * uriniferous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000377] + * uriniferous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000377 ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A05.810.453.736.560 * SCTID:361332007 * TAO:0001287 - * UMLS:C0022674 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Tubule] + * UMLS:C0022674 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Tubule ] * Wikipedia:Renal_tubule * ZFA:0001287 * ncithesaurus:Renal_Tubule @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial tube](../../UBERON/14/UBERON_0003914.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nephron](../../UBERON/85/UBERON_0001285.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004210 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001331.md b/md/UBERON/31/UBERON_0001331.md index 722ae96727..a12f973f59 100644 --- a/md/UBERON/31/UBERON_0001331.md +++ b/md/UBERON/31/UBERON_0001331.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001331 * *Label* = skin of penis - * *Definition* = A zone of skin that is part of a penis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a penis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * penile skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19638] + * penile skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19638 ] * penis skin - * penis zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * penis zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [penis](../../UBERON/89/UBERON_0000989.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001431.md b/md/UBERON/31/UBERON_0001431.md index 1cfb21c252..f1d8cc64cd 100644 --- a/md/UBERON/31/UBERON_0001431.md +++ b/md/UBERON/31/UBERON_0001431.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001431 * *Label* = distal carpal bone 2 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezoid_bone] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezoid_bone ] * *Comment* = Taxon notes: located in the distal part of the carpus and articulating with the second metacarpal, the distal carpals 1 and 2 and the radiale.[VSAO] in humans - The capitate articulates with 2nd metacarpal distally, scaphoid proximally, trapezium medially, capitate medially[WP] Amphibians: Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2)[AAO] ## Synonyms - * distal carpal 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005044] - * lesser multangular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23724] - * os trapezoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005044] - * trapezoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005044] - * trapezoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23724] - * carpal 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000848] - * hand distal carpal bone 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001341] + * distal carpal 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005044 ] + * lesser multangular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23724 ] + * os trapezoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005044 ] + * trapezoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005044 ] + * trapezoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23724 ] + * carpal 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000848 ] + * hand distal carpal bone 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001341 ] * lesser multangular - * lesser multiangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001341] + * lesser multiangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001341 ] * manus distal carpal bone 2 ## Cross-references @@ -27,7 +27,7 @@ * OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA * OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA * SCTID:361781006 - * UMLS:C0223741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trapezoid_Bone] + * UMLS:C0223741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trapezoid_Bone ] * VSAO:0005044 * Wikipedia:Trapezoid_bone * galen:Trapezoid @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal bone 2 endochondral element](../../UBERON/87/UBERON_0015087.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001531.md b/md/UBERON/31/UBERON_0001531.md index b07976bcd0..9e2c912f5b 100644 --- a/md/UBERON/31/UBERON_0001531.md +++ b/md/UBERON/31/UBERON_0001531.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001531 * *Label* = right common carotid artery plus branches - * *Definition* = In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_common_carotid_artery] + * *Definition* = In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_common_carotid_artery ] * *Comment* = Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches ## Synonyms - * right common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001928] - * trunk of right common carotid tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3941] - * right common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3941] + * right common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001928 ] + * trunk of right common carotid tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3941 ] + * right common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3941 ] ## Cross-references @@ -19,7 +19,7 @@ * OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA * SCTID:362042003 - * UMLS:C0226086 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Common_Carotid_Artery] + * UMLS:C0226086 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Common_Carotid_Artery ] * Wikipedia:Right_common_carotid_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png * ncithesaurus:Right_Common_Carotid_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001631.md b/md/UBERON/31/UBERON_0001631.md index e624f9be76..8961ba71d8 100644 --- a/md/UBERON/31/UBERON_0001631.md +++ b/md/UBERON/31/UBERON_0001631.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001631 * *Label* = thoracic duct - * *Definition* = Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5031[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_duct] + * *Definition* = Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5031, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_duct ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * trunk of thoracic duct tree - * ductus thoracicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus thoracicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A15.382.520.869 * SCTID:362600004 * TAO:0005110 - * UMLS:C0039979 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Duct] + * UMLS:C0039979 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Duct ] * Wikipedia:Thoracic_duct * ZFA:0005110 * http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001731.md b/md/UBERON/31/UBERON_0001731.md index 4535ecf223..e04424a960 100644 --- a/md/UBERON/31/UBERON_0001731.md +++ b/md/UBERON/31/UBERON_0001731.md @@ -9,8 +9,8 @@ * lumen of pharynx * pharyngeal cavity - * cavitas pharyngealis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavitas pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002097] + * cavitas pharyngealis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavitas pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002097 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [pharynx](../../UBERON/62/UBERON_0006562.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001831.md b/md/UBERON/31/UBERON_0001831.md index 8343758347..a0a62f0245 100644 --- a/md/UBERON/31/UBERON_0001831.md +++ b/md/UBERON/31/UBERON_0001831.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001831 * *Label* = parotid gland - * *Definition* = The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parotid_gland] + * *Definition* = The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parotid_gland ] * *Comment* = The mouse parotid, exorbital lacrimal gland and exocrine pancreas have similar histological appearances[ISBN10:0123813611] ## Synonyms * parotid - * glandula parotidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parotid_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula parotidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parotid_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A10.336.779.464 * OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA * SCTID:181234002 - * UMLS:C0030580 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parotid_Gland] + * UMLS:C0030580 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parotid_Gland ] * VHOG:0000308 * Wikipedia:Parotid_gland * galen:ParotidGland @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A mammalian salivary gland located caudal to the ear. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-22, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The most common oral glands in mammals are the salivary glands. There are usually three primary pairs of salivary glands, named for their approximate positions: mandibular (submandibular or submaxillary), sublingual, and parotid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0001931.md b/md/UBERON/31/UBERON_0001931.md index c3c57d0458..be2e86cc5d 100644 --- a/md/UBERON/31/UBERON_0001931.md +++ b/md/UBERON/31/UBERON_0001931.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001931 * *Label* = lateral preoptic nucleus - * *Definition* = The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preoptic_area#Lateral_preoptic_nucleus] + * *Definition* = The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preoptic_area#Lateral_preoptic_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lateral preoptic area * lateral preoptic hypothalamic nucleus - * LPO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area praeoptica lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:381[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area preoptica lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:381[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus praeopticus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:381[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus preopticus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:381[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * LPO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area praeoptica lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:381, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area preoptica lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:381, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus praeopticus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:381, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus preopticus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:381, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,10 +24,10 @@ * FMA:62326 * MA:0000835 * NIF_GrossAnatomy:birnlex_1722 - * NeuroNames:381 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1722] + * NeuroNames:381 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1722 ] * SCTID:369129002 - * UMLS:C0175312 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1722] - * UMLS:C1289556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1722] + * UMLS:C0175312 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1722 ] + * UMLS:C1289556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1722 ] * Wikipedia:Preoptic_area#Lateral_preoptic_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002031.md b/md/UBERON/31/UBERON_0002031.md index f5485b4259..1645035045 100644 --- a/md/UBERON/31/UBERON_0002031.md +++ b/md/UBERON/31/UBERON_0002031.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002031 * *Label* = epithelium of bronchus - * *Definition* = An epithelium that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchi epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchial epithelium - * bronchial trunk epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchial trunk epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchus epithelium - * epithelial tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ * EMAPA:32691 * FMA:67782 * MA:0001839 - * UMLS:C0599333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchial_Epithelium] + * UMLS:C0599333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchial_Epithelium ] * ncithesaurus:Bronchial_Epithelium ## Subsets @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002131.md b/md/UBERON/31/UBERON_0002131.md index 8f563d45ba..7345d6e3d1 100644 --- a/md/UBERON/31/UBERON_0002131.md +++ b/md/UBERON/31/UBERON_0002131.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002131 * *Label* = anterior lobe of cerebellum - * *Definition* = The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_lobe_of_cerebellum] + * *Definition* = The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_lobe_of_cerebellum ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * anterior cerebellar lobe * anterior lobe of cerebellum - * anterior lobe of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1118] + * anterior lobe of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1118 ] * cerebellar anterior lobe * cerebellum anterior lobe @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002231.md b/md/UBERON/31/UBERON_0002231.md index 6739f962b9..571381dd7e 100644 --- a/md/UBERON/31/UBERON_0002231.md +++ b/md/UBERON/31/UBERON_0002231.md @@ -16,7 +16,7 @@ * FMA:7577 * MA:0001416 * SCTID:263361000 - * UMLS:C0448161 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_Shaft] + * UMLS:C0448161 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_Shaft ] * ncithesaurus:Rib_Shaft ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002331.md b/md/UBERON/31/UBERON_0002331.md index 2069b89232..ee06ebd06d 100644 --- a/md/UBERON/31/UBERON_0002331.md +++ b/md/UBERON/31/UBERON_0002331.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002331 * *Label* = umbilical cord - * *Definition* = The connecting cord from the developing embryo to the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_cord] + * *Definition* = The connecting cord from the developing embryo to the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_cord ] * *Comment* = See notes for connecting stalk ## Synonyms - * chorda umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * funiculus umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * birth cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_cord] + * chorda umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * funiculus umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * birth cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_cord ] * connecting stalk - * funiculus umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * yolk stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001415] + * funiculus umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * yolk stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001415 ] ## Cross-references @@ -31,7 +31,7 @@ * MIAA:0000280 * OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA * SCTID:280644003 - * UMLS:C0041633 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Umbilical_Cord] + * UMLS:C0041633 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Umbilical_Cord ] * Wikipedia:Umbilical_cord * http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg * ncithesaurus:Umbilical_Cord @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta.property_value, external_definition the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = umbilical - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002431.md b/md/UBERON/31/UBERON_0002431.md index 393ed1c2ef..59113b3f1d 100644 --- a/md/UBERON/31/UBERON_0002431.md +++ b/md/UBERON/31/UBERON_0002431.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0006965 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002431 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_0002531.md b/md/UBERON/31/UBERON_0002531.md index 95780f255d..ad43106367 100644 --- a/md/UBERON/31/UBERON_0002531.md +++ b/md/UBERON/31/UBERON_0002531.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002531 * *Label* = paired fin bud - * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a paired fin. The fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005650[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a paired fin. The fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005650, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001383] - * fin buds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000179[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001383 ] + * fin buds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000179, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [paired fin](../../UBERON/34/UBERON_0002534.md) and [paired limb/fin bud](../../UBERON/57/UBERON_0004357.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Embryonic surface structure that develops into a paired fin.[ZFA] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002631.md b/md/UBERON/31/UBERON_0002631.md index 4a72ba81bc..6f64188be4 100644 --- a/md/UBERON/31/UBERON_0002631.md +++ b/md/UBERON/31/UBERON_0002631.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002631 * *Label* = cerebral crus - * *Definition* = The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_crus] + * *Definition* = The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_crus ] ## Synonyms - * cerebral peduncle (clinical definition) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72464] - * crura cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001056] - * crus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100243] - * ccr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1218[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Rostrum of corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ccr] - * base of cerebral peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004677] - * basis cerebri (Oertel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basis pedunculi (Oertel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basis pedunculi cerebri (Willis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebral peduncle basal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cp] - * cerebral peduncle, basal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539] - * crus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004677] - * crus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_crus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crus of the cerebral peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539] - * pars neo-encephalica pedunculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebri, pars basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pes pedunculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pes pedunculi of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:539[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rostrum of corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ccr] + * cerebral peduncle (clinical definition) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72464 ] + * crura cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001056 ] + * crus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100243 ] + * ccr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1218, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Rostrum of corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ccr ] + * base of cerebral peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004677 ] + * basis cerebri (Oertel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basis pedunculi (Oertel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basis pedunculi cerebri (Willis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebral peduncle basal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cp ] + * cerebral peduncle, basal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539 ] + * crus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004677 ] + * crus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_crus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crus of the cerebral peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539 ] + * pars neo-encephalica pedunculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebri, pars basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pes pedunculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pes pedunculi of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:539, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rostrum of corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ccr ] ## Cross-references @@ -36,8 +36,8 @@ * FMA:72464 * MA:0001056 * NIF_GrossAnatomy:birnlex_1218 - * NeuroNames:539 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1218] - * UMLS:C0175414 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1218] + * NeuroNames:539 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1218 ] + * UMLS:C0175414 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1218 ] * Wikipedia:Cerebral_crus * http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png @@ -62,8 +62,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002731.md b/md/UBERON/31/UBERON_0002731.md index 5a87f3a55e..40e1eecf8a 100644 --- a/md/UBERON/31/UBERON_0002731.md +++ b/md/UBERON/31/UBERON_0002731.md @@ -6,11 +6,11 @@ ## Synonyms - * central part of vestibulocochlear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72499] - * statoacoustic nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72499] - * vestibulocochlear nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72499] - * vestibulocochlear nerve roots [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72499] - * vestibulocochlear nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72499] + * central part of vestibulocochlear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72499 ] + * statoacoustic nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72499 ] + * vestibulocochlear nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72499 ] + * vestibulocochlear nerve roots [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72499 ] + * vestibulocochlear nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72499 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002831.md b/md/UBERON/31/UBERON_0002831.md index a47fc0f3b5..332cd5fe43 100644 --- a/md/UBERON/31/UBERON_0002831.md +++ b/md/UBERON/31/UBERON_0002831.md @@ -6,21 +6,21 @@ ## Synonyms - * posterior part of anterior cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2573] - * PVCo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2573[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus cochlearis posteroventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:724[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior part of the ventral cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:724] - * posterior ventral cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:724] - * ventral cochlear nucleus, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:724] - * ventral coclear nucleus posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:724] + * posterior part of anterior cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2573 ] + * PVCo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2573, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus cochlearis posteroventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:724, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior part of the ventral cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:724 ] + * posterior ventral cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:724 ] + * ventral cochlear nucleus, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:724 ] + * ventral coclear nucleus posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:724 ] ## Cross-references * BAMS:PVCo * FMA:72572 * NIF_GrossAnatomy:birnlex_2573 - * NeuroNames:724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2573] - * UMLS:C0926558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2573] + * NeuroNames:724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2573 ] + * UMLS:C0926558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2573 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0002931.md b/md/UBERON/31/UBERON_0002931.md index 9db70cdd3d..b11a21bfa1 100644 --- a/md/UBERON/31/UBERON_0002931.md +++ b/md/UBERON/31/UBERON_0002931.md @@ -6,16 +6,16 @@ ## Synonyms - * nucleus dorsalis septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:260[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus septalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:260[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus dorsalis septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:260, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus septalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:260, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:DS * FMA:61877 * NIF_GrossAnatomy:birnlex_704 - * NeuroNames:260 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_704] - * UMLS:C0262226 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_704] + * NeuroNames:260 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_704 ] + * UMLS:C0262226 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_704 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003031.md b/md/UBERON/31/UBERON_0003031.md index 6f4698a6fe..25f53a9e55 100644 --- a/md/UBERON/31/UBERON_0003031.md +++ b/md/UBERON/31/UBERON_0003031.md @@ -6,17 +6,17 @@ ## Synonyms - * gelatinosus thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62223] - * nucleus submedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62223[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus submedius thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_946] - * submedial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62223] - * submedial nucleus thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_946] - * submedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_946] - * SM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_946[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus of the stria medullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SM] - * submammillothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SMT] - * submedial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:364] - * submedius thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:364] + * gelatinosus thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62223 ] + * nucleus submedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62223, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus submedius thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_946 ] + * submedial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62223 ] + * submedial nucleus thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_946 ] + * submedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_946 ] + * SM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_946, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus of the stria medullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SM ] + * submammillothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SMT ] + * submedial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:364 ] + * submedius thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:364 ] ## Cross-references @@ -27,9 +27,9 @@ * EV:0100203 * FMA:62223 * NIF_GrossAnatomy:birnlex_946 - * NeuroNames:364 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_946] + * NeuroNames:364 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_946 ] * SCTID:279151007 - * UMLS:C0175301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_946] + * UMLS:C0175301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_946 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003131.md b/md/UBERON/31/UBERON_0003131.md index 0c42b3a1e3..83b4397542 100644 --- a/md/UBERON/31/UBERON_0003131.md +++ b/md/UBERON/31/UBERON_0003131.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003131 * *Label* = arthropod tibia - * *Definition* = A section of the arthropod leg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arthropod_leg] + * *Definition* = A section of the arthropod leg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arthropod_leg ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology. Homology notes: homology of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments. ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003231.md b/md/UBERON/31/UBERON_0003231.md index 0b749e52dd..40c257f34e 100644 --- a/md/UBERON/31/UBERON_0003231.md +++ b/md/UBERON/31/UBERON_0003231.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003231 * *Label* = epithelium of hip - * *Definition* = An epithelium that is part of a hip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a hip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003331.md b/md/UBERON/31/UBERON_0003331.md index 0ed0b7d425..1a69a86e6c 100644 --- a/md/UBERON/31/UBERON_0003331.md +++ b/md/UBERON/31/UBERON_0003331.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003331 * *Label* = submucosa of colon - * *Definition* = A submucosa that is part of a colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * colon submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colonic submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14985] - * large bowel submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * colon submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colonic submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14985 ] + * large bowel submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003431.md b/md/UBERON/31/UBERON_0003431.md index 5a509b3cff..4e5e9939c1 100644 --- a/md/UBERON/31/UBERON_0003431.md +++ b/md/UBERON/31/UBERON_0003431.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003431 * *Label* = leg nerve - * *Definition* = A nerve that is part of a leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003531.md b/md/UBERON/31/UBERON_0003531.md index 087ecd6cd8..e9a5441313 100644 --- a/md/UBERON/31/UBERON_0003531.md +++ b/md/UBERON/31/UBERON_0003531.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003531 * *Label* = forelimb skin - * *Definition* = A zone of skin that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check free limb vs pectoral complex ## Synonyms - * anteriormost limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23101] - * superior member skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23101] - * wing skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23101 ] + * superior member skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23101 ] + * wing skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,7 +27,7 @@ * FMA:23101 * MA:0000617 * SCTID:244130001 - * UMLS:C0222212 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Upper_Limb_and_Shoulder] + * UMLS:C0222212 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Upper_Limb_and_Shoulder ] * ncithesaurus:Skin_of_the_Upper_Limb_and_Shoulder ## Subsets @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003631.md b/md/UBERON/31/UBERON_0003631.md index 607dc3c0dd..d1ab6d5fa3 100644 --- a/md/UBERON/31/UBERON_0003631.md +++ b/md/UBERON/31/UBERON_0003631.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003631 * *Label* = pedal digit 1 - * *Definition* = 1st digit of the hind autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hallux] + * *Definition* = 1st digit of the hind autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hallux ] ## Synonyms - * digit 1 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17460] + * digit 1 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17460 ] * digit 1 of pes - * digitus primus pedis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000465] - * great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25047] + * digitus primus pedis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000465 ] + * great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25047 ] * hallex - * hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hallux; digitus primus [I] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25047] + * hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hallux; digitus primus [I] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25047 ] * hind digit 1 - * hind digit I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010644] - * hind limb digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind digit I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010644 ] + * hind limb digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pedal digit 1 * pes digit I * preaxial digit of hindlimb - * toe 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002037] + * toe 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002037 ] * big toe - * foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hindlimb dewclaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dewclaw[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * digitus primus (I) pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002349] - * first toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17460] - * large toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17460] + * foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hindlimb dewclaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dewclaw, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * digitus primus (I) pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002349 ] + * first toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17460 ] + * large toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17460 ] ## Cross-references @@ -41,7 +41,7 @@ * MESH:A01.378.610.250.300.792.380 * SCTID:21699005 * SCTID:302546000 - * UMLS:C1708079 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_1] + * UMLS:C1708079 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_1 ] * VSAO:0000201 * Wikipedia:Hallux * http://upload.wikimedia.org/wikipedia/commons/a/ab/RightFootToes.jpg @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 1](../../UBERON/48/UBERON_0006048.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003831.md b/md/UBERON/31/UBERON_0003831.md index 8117eedb29..732df43dd8 100644 --- a/md/UBERON/31/UBERON_0003831.md +++ b/md/UBERON/31/UBERON_0003831.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003831 * *Label* = respiratory system muscle - * *Definition* = A muscle organ that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0003931.md b/md/UBERON/31/UBERON_0003931.md index f06642755b..cf117ed798 100644 --- a/md/UBERON/31/UBERON_0003931.md +++ b/md/UBERON/31/UBERON_0003931.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003931 * *Label* = diencephalic white matter - * *Definition* = White matter that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = White matter that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalic tract/commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000338] - * diencephalic tracts and commissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000338[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * white matter of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83931] + * diencephalic tract/commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000338 ] + * diencephalic tracts and commissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000338, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * white matter of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83931 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004031.md b/md/UBERON/31/UBERON_0004031.md index 5ec3f5dfb0..1b7269c11d 100644 --- a/md/UBERON/31/UBERON_0004031.md +++ b/md/UBERON/31/UBERON_0004031.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004031 * *Label* = ectomesenchyme - * *Definition* = mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006302] + * *Definition* = mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006302 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ectomesenchyme has similar properties to mesenchyme. The major difference is that ectomesenchyme is usually considered to arise from neural crest cells, which are a critical group of cells that form in the cranial region during early vertebrate development. Thus, ectomesenchyme plays a critical role in the formation of the hard and soft tissues of the head and neck such as bones, muscles, teeth, and, most important, the branchial arches[Wikipedia:Ectomesenchyme]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004231.md b/md/UBERON/31/UBERON_0004231.md index b960ad458c..3721c5d405 100644 --- a/md/UBERON/31/UBERON_0004231.md +++ b/md/UBERON/31/UBERON_0004231.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004231 * *Label* = anal region smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of an anal region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of an anal region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anal part of perineum involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal part of perineum non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal part of perineum smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal part of perineum smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anal part of perineum involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal part of perineum non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal part of perineum smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal part of perineum smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004331.md b/md/UBERON/31/UBERON_0004331.md index 4c15fcbed6..f0c5f8a84b 100644 --- a/md/UBERON/31/UBERON_0004331.md +++ b/md/UBERON/31/UBERON_0004331.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004331 * *Label* = proximal phalanx of manual digit 5 - * *Definition* = A proximal phalanx that is part of a hand digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a hand digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th digit of hand proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5th finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth proximal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23922] - * hand digit 5 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 5th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 5th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23922] - * proximal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23922] + * 5th digit of hand proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5th finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth proximal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23922 ] + * hand digit 5 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 5th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 5th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23922 ] + * proximal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23922 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004431.md b/md/UBERON/31/UBERON_0004431.md index 2e22564321..6e0b7683d3 100644 --- a/md/UBERON/31/UBERON_0004431.md +++ b/md/UBERON/31/UBERON_0004431.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004431 * *Label* = proximal epiphysis of fifth metatarsal bone - * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of fifth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42967] - * proximal end of fifth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42967] + * base of fifth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42967 ] + * proximal end of fifth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42967 ] * proximal epiphysis of metatarsal 5 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 5](../../UBERON/54/UBERON_0003654.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004531.md b/md/UBERON/31/UBERON_0004531.md index 409e0c4540..1f6b5dcdaa 100644 --- a/md/UBERON/31/UBERON_0004531.md +++ b/md/UBERON/31/UBERON_0004531.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004531 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_0004631.md b/md/UBERON/31/UBERON_0004631.md index 0a88d5327b..0be215c21b 100644 --- a/md/UBERON/31/UBERON_0004631.md +++ b/md/UBERON/31/UBERON_0004631.md @@ -7,9 +7,9 @@ ## Synonyms - * Sixth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9945] - * T6 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9945] - * sixth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9945] + * Sixth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9945 ] + * T6 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9945 ] + * sixth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9945 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9945 * MA:0001443 * SCTID:181834005 - * UMLS:C0459949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T6_Vertebra] + * UMLS:C0459949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T6_Vertebra ] * ncithesaurus:T6_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004731.md b/md/UBERON/31/UBERON_0004731.md index 6c4598ed77..2a4670d620 100644 --- a/md/UBERON/31/UBERON_0004731.md +++ b/md/UBERON/31/UBERON_0004731.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004731 * *Label* = neuromere - * *Definition* = A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1016/j.tins.2013.06.004] + * *Definition* = A transverse unitary subdivision of the neural tube that shares a common dorsoventral structure (floor, basal, alar, and roof plates), but each having differential molecular identities and fates; they comprise the secondary prosencephalon, diencephalon (prosomeres), the midbrain (mesomeres), and the hindbrain (rhombomeres). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1016/j.tins.2013.06.004 ] * *Comment* = We take the definition of neuromere from Puelles et al, although the existence of mesomeres and prosomeres may not be widely accepted ## Synonyms - * neural tube metameric segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * neural tube metameric segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * neural tube segment * neuromere - * neuromeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001328[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neuromeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001328, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * neural metamere * neural segment @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) and [segmental subdivision of nervous system](../../UBERON/32/UBERON_0004732.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A metameric segment of the central nervous system.[ZFA] * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-06-18T09:00:04Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004831.md b/md/UBERON/31/UBERON_0004831.md index 082b64710e..9fc86145e5 100644 --- a/md/UBERON/31/UBERON_0004831.md +++ b/md/UBERON/31/UBERON_0004831.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004831 * *Label* = esophagus skeletal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * esophagus skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0004931.md b/md/UBERON/31/UBERON_0004931.md index 8f7134c513..f8fe1d0e3f 100644 --- a/md/UBERON/31/UBERON_0004931.md +++ b/md/UBERON/31/UBERON_0004931.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004931 * *Label* = submucosa of descending colon - * *Definition* = A submucosa that is part of a descending colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a descending colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * descending colon submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * descending colon submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [descending colon](../../UBERON/58/UBERON_0001158.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0005031.md b/md/UBERON/31/UBERON_0005031.md index 0504f87205..76e8aee74d 100644 --- a/md/UBERON/31/UBERON_0005031.md +++ b/md/UBERON/31/UBERON_0005031.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005031 * *Label* = mucosa of upper lip - * *Definition* = A mucosa that is part of a upper lip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a upper lip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of upper lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of upper lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of upper lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper lip mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper lip mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper lip mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper lip organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of upper lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of upper lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of upper lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper lip mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper lip mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper lip mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper lip organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:59832 * SCTID:362088009 - * UMLS:C0226933 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mucosa_of_the_Upper_Lip] + * UMLS:C0226933 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mucosa_of_the_Upper_Lip ] * ncithesaurus:Mucosa_of_the_Upper_Lip ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lip](../../UBERON/34/UBERON_0001834.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0005331.md b/md/UBERON/31/UBERON_0005331.md index 5a117c23a1..16b324fa20 100644 --- a/md/UBERON/31/UBERON_0005331.md +++ b/md/UBERON/31/UBERON_0005331.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005331 * *Label* = mesonephric renal vesicle - * *Definition* = The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061243] + * *Definition* = The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061243 ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [renal vesicle](../../UBERON/09/UBERON_0004209.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0005431.md b/md/UBERON/31/UBERON_0005431.md index 5d2aa55e28..eb561ed8a1 100644 --- a/md/UBERON/31/UBERON_0005431.md +++ b/md/UBERON/31/UBERON_0005431.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005431 * *Label* = anterior spinal artery - * *Definition* = In human anatomy, the anterior spinal artery is the blood vessel that supplies the anterior portion of the spinal cord. It arises from branches of the vertebral arteries and is supplied by the anterior segmental medullary arteries, including the artery of Adamkiewicz, and courses along the anterior aspect of the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_spinal_artery] + * *Definition* = In human anatomy, the anterior spinal artery is the blood vessel that supplies the anterior portion of the spinal cord. It arises from branches of the vertebral arteries and is supplied by the anterior segmental medullary arteries, including the artery of Adamkiewicz, and courses along the anterior aspect of the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_spinal_artery ] ## Synonyms - * anterior medial spinal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50531] - * ventral spinal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50531] - * anterior spinal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_spinal_artery] - * arteria spinalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_spinal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria spinalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_spinal_artery] - * ventral artery of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_spinal_artery] + * anterior medial spinal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50531 ] + * ventral spinal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50531 ] + * anterior spinal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_spinal_artery ] + * arteria spinalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_spinal_artery ] + * arteria spinalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_spinal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral artery of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_spinal_artery ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:18242 * FMA:50531 * SCTID:181329004 - * UMLS:C0149603 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Spinal_Artery] + * UMLS:C0149603 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Spinal_Artery ] * Wikipedia:Anterior_spinal_artery * http://upload.wikimedia.org/wikipedia/commons/7/73/Anterior_spinal_cord_-_very_low_mag.jpg * ncithesaurus:Anterior_Spinal_Artery @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0005631.md b/md/UBERON/31/UBERON_0005631.md index 90e3d3e006..0763fb652b 100644 --- a/md/UBERON/31/UBERON_0005631.md +++ b/md/UBERON/31/UBERON_0005631.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005631 * *Label* = extraembryonic membrane - * *Definition* = Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = AO notes: EHDAA2 is a mereological sum. Taxon notes: stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN10:0073040584 "Vertebrates, Kardong"] ## Synonyms @@ -32,9 +32,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005631 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000010 +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_0005731.md b/md/UBERON/31/UBERON_0005731.md index 01dbe6960b..d5de668191 100644 --- a/md/UBERON/31/UBERON_0005731.md +++ b/md/UBERON/31/UBERON_0005731.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005731 * *Label* = fin field - * *Definition* = A limb/fin field that has_potential_to_developmentally_contribute_to a paired fin bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb/fin field that has_potential_to_developmentally_contribute_to a paired fin bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [paired fin bud](../../UBERON/31/UBERON_0002531.md) and [paired limb/fin field](../../UBERON/32/UBERON_0005732.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0005931.md b/md/UBERON/31/UBERON_0005931.md index b1dd5840ef..b6351766de 100644 --- a/md/UBERON/31/UBERON_0005931.md +++ b/md/UBERON/31/UBERON_0005931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005931 * *Label* = primary choana - * *Definition* = initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/primary-choana.html] + * *Definition* = initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/primary-choana.html ] * *Comment* = TODO - check. MA says part_of external naris. ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006231.md b/md/UBERON/31/UBERON_0006231.md index f475d7707b..8bd9c4b0bf 100644 --- a/md/UBERON/31/UBERON_0006231.md +++ b/md/UBERON/31/UBERON_0006231.md @@ -7,7 +7,7 @@ ## Synonyms - * facial bones primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000488] + * facial bones primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000488 ] * facial skeleton primordium * viscerocranium primordium @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006331.md b/md/UBERON/31/UBERON_0006331.md index 9c7ccc0628..96fd3b955b 100644 --- a/md/UBERON/31/UBERON_0006331.md +++ b/md/UBERON/31/UBERON_0006331.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006331 * *Label* = brainstem nucleus - * *Definition* = A nucleus of brain that is part of a brainstem. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a brainstem. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brainstem](../../UBERON/98/UBERON_0002298.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006431.md b/md/UBERON/31/UBERON_0006431.md index 1b59323cb1..3bf07ccf9c 100644 --- a/md/UBERON/31/UBERON_0006431.md +++ b/md/UBERON/31/UBERON_0006431.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006431 * *Label* = xiphoid process bone - * *Definition* = A bone tissue that is part of a xiphoid process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone tissue that is part of a xiphoid process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone tissue of xiphoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32577] - * xiphoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Xiphoid_process] + * bone tissue of xiphoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32577 ] + * xiphoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Xiphoid_process ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [xiphoid process](../../UBERON/07/UBERON_0002207.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006531.md b/md/UBERON/31/UBERON_0006531.md index 1c5b2693ca..733856848e 100644 --- a/md/UBERON/31/UBERON_0006531.md +++ b/md/UBERON/31/UBERON_0006531.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006531 * *Label* = oculomotor muscle - * *Definition* = The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.633.567.700] + * *Definition* = The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.633.567.700 ] * *Comment* = we follow MA in making this a subclass of extra-ocular muscle but the distinction is not clear ## Synonyms @@ -14,7 +14,7 @@ * CALOHA:TS-0305 * MA:0002432 * MESH:A02.633.567.700 - * UMLS:C0028863 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oculomotor_Muscle] + * UMLS:C0028863 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oculomotor_Muscle ] * ncithesaurus:Oculomotor_Muscle ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006631.md b/md/UBERON/31/UBERON_0006631.md index ec5724373e..2764804d82 100644 --- a/md/UBERON/31/UBERON_0006631.md +++ b/md/UBERON/31/UBERON_0006631.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006631 * *Label* = right atrium auricular region - * *Definition* = a small conical muscular pouch attached to the right atrium of the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] + * *Definition* = a small conical muscular pouch attached to the right atrium of the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] ## Synonyms - * auricula dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * right auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7218] - * right auricula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * right auriculur appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrial_appendage] - * right auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16824] - * right atrial appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001870] + * auricula dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * right auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7218 ] + * right auricula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * right auriculur appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrial_appendage ] + * right auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16824 ] + * right atrial appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001870 ] * right atrium appendage - * right auricular appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7218] + * right auricular appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7218 ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrium auricular region](../../UBERON/18/UBERON_0006618.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006831.md b/md/UBERON/31/UBERON_0006831.md index 4f66ce5299..b7e8b0a80d 100644 --- a/md/UBERON/31/UBERON_0006831.md +++ b/md/UBERON/31/UBERON_0006831.md @@ -6,7 +6,7 @@ ## Synonyms - * pretracheal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001798] + * pretracheal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001798 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0006931.md b/md/UBERON/31/UBERON_0006931.md index 2eb79e14a7..1628263a6a 100644 --- a/md/UBERON/31/UBERON_0006931.md +++ b/md/UBERON/31/UBERON_0006931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006931 * *Label* = stomach glandular region mucosa - * *Definition* = A mucosa of stomach that is part of a stomach glandular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa of stomach that is part of a stomach glandular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa of stomach](../../UBERON/99/UBERON_0001199.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach glandular region](../../UBERON/53/UBERON_0011953.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0007331.md b/md/UBERON/31/UBERON_0007331.md index 7b7c252087..21e497eb0f 100644 --- a/md/UBERON/31/UBERON_0007331.md +++ b/md/UBERON/31/UBERON_0007331.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007331 * *Label* = maxillary rhamphotheca - * *Definition* = A rhamphotheca that is part of a upper beak. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhamphotheca that is part of a upper beak. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * maxillary beak - * rhinotheca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Beak#Rhamphotheca] + * rhinotheca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Beak#Rhamphotheca ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [upper beak](../../UBERON/12/UBERON_0010012.md) and [rhamphotheca](../../UBERON/30/UBERON_0007330.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0007631.md b/md/UBERON/31/UBERON_0007631.md index 01c8c4f148..60fbfa0123 100644 --- a/md/UBERON/31/UBERON_0007631.md +++ b/md/UBERON/31/UBERON_0007631.md @@ -6,9 +6,9 @@ ## Synonyms - * accessory olfactory bulb, glomerular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AOBgl] - * glomerular layer of the accessory olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GlA] - * main olfactory bulb glomerular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gl] + * accessory olfactory bulb, glomerular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AOBgl ] + * glomerular layer of the accessory olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GlA ] + * main olfactory bulb glomerular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gl ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0007731.md b/md/UBERON/31/UBERON_0007731.md index 51027433e1..b64d1f2dbf 100644 --- a/md/UBERON/31/UBERON_0007731.md +++ b/md/UBERON/31/UBERON_0007731.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007731 * *Label* = interphalangeal joint of manual digit 4 - * *Definition* = An interphalangeal joint of manus that is part of a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of manus that is part of a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35403] - * interphalangeal joint of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35403] - * interphalangeal joint of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35403[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35403 ] + * interphalangeal joint of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35403 ] + * interphalangeal joint of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35403, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of manus](../../UBERON/22/UBERON_0007722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0007831.md b/md/UBERON/31/UBERON_0007831.md index 8819f4c3bb..adef1f95eb 100644 --- a/md/UBERON/31/UBERON_0007831.md +++ b/md/UBERON/31/UBERON_0007831.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007831 * *Label* = pectoral girdle skeleton - * *Definition* = A subdivision of a limb or fin skeleton consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Examples: There are only two instances, right and left pectoral girdle skeletons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoral_girdle] + * *Definition* = A subdivision of a limb or fin skeleton consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Examples: There are only two instances, right and left pectoral girdle skeletons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoral_girdle ] * *Comment* = AO notes: Note that the VSAO and many ontologies use the label 'pectoral girdle' to denote the skeletal region specifically. ## Synonyms - * skeletal parts of pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * skeleton of pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * cingulum pectorale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoral_girdle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000156[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * scapular girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000407] + * skeletal parts of pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * skeleton of pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * cingulum pectorale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoral_girdle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000156, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * scapular girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000407 ] ## Cross-references @@ -25,7 +25,7 @@ * MAT:0000181 * MIAA:0000181 * TAO:0000407 - * UMLS:C0427245 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Shoulder_Girdle] + * UMLS:C0427245 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Shoulder_Girdle ] * VHOG:0001156 * VSAO:0000156 * Wikipedia:Pectoral_girdle @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) and [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal structure immediately behind the head attached to the vertebral column by muscles and supporting the forelimbs.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pectoral girdle is clearly of dual origin, composed of dermal as well as endochondral bones. The endochondral component, the scapulocoracoid, evolved by fusion or enlargment of several basal fin elements. (...) The dermal component of the shoulder girdle evolved from dermal bones of the body's surface. (...) Like endochondral bones, these dermal bones were passed along to tetrapods (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0008231.md b/md/UBERON/31/UBERON_0008231.md index 343861a7b8..c5dbffad22 100644 --- a/md/UBERON/31/UBERON_0008231.md +++ b/md/UBERON/31/UBERON_0008231.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008231 * *Label* = dorsal thoracic segment of trunk - * *Definition* = Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] + * *Definition* = Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] ## Synonyms - * dorsum of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] - * posterior part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] - * thoracic back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] - * thoracic part of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] - * upper back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000028] - * back of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24217] + * dorsum of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] + * posterior part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] + * thoracic back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] + * thoracic part of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] + * upper back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000028 ] + * back of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24217 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0008331.md b/md/UBERON/31/UBERON_0008331.md index ecdbab348e..8f160cacb8 100644 --- a/md/UBERON/31/UBERON_0008331.md +++ b/md/UBERON/31/UBERON_0008331.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008331 * *Label* = clitoral smooth muscle - * *Definition* = A smooth muscle tissue that is part of a clitoris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A smooth muscle tissue that is part of a clitoris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * clitoris smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005000] + * clitoris smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005000 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [clitoris](../../UBERON/11/UBERON_0002411.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0008431.md b/md/UBERON/31/UBERON_0008431.md index 5273939dcd..257e3cdca7 100644 --- a/md/UBERON/31/UBERON_0008431.md +++ b/md/UBERON/31/UBERON_0008431.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008431 * *Label* = sacral foramen - * *Definition* = A vertebral foramen that is part of a sacral vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vertebral foramen that is part of a sacral vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral vertebra](../../UBERON/94/UBERON_0001094.md) and [vertebral foramen](../../UBERON/31/UBERON_0001131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008431 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0008831.md b/md/UBERON/31/UBERON_0008831.md index 2978abf05d..3d78bd6769 100644 --- a/md/UBERON/31/UBERON_0008831.md +++ b/md/UBERON/31/UBERON_0008831.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008831 * *Label* = inner spiral sulcus - * *Definition* = a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/inner-spiral-sulcus.html] + * *Definition* = a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/inner-spiral-sulcus.html ] * *Comment* = part_of spiral sulcus in MA ## Synonyms - * internal spiral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001197] - * sulcus spiralis internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/inner-spiral-sulcus.html] + * internal spiral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001197 ] + * sulcus spiralis internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/inner-spiral-sulcus.html ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0009131.md b/md/UBERON/31/UBERON_0009131.md index 55fc26a322..332605e057 100644 --- a/md/UBERON/31/UBERON_0009131.md +++ b/md/UBERON/31/UBERON_0009131.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0001103 * *[consider](../../er/oboInOwl#consider.md)* = SCTID:361481005 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009131 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_0009631.md b/md/UBERON/31/UBERON_0009631.md index 43f82d24d6..67d2f54d16 100644 --- a/md/UBERON/31/UBERON_0009631.md +++ b/md/UBERON/31/UBERON_0009631.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009631 * *Label* = root of lumbar spinal nerve - * *Definition* = A spinal nerve root that is part of a lumbar nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal nerve root that is part of a lumbar nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumbar spinal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16421] - * lumbar spinal neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16421] - * nerve root part of lumbar spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF:NIF] + * lumbar spinal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16421 ] + * lumbar spinal neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16421 ] + * nerve root part of lumbar spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF:NIF ] ## Cross-references * FMA:16421 * NIF_GrossAnatomy:birnlex_1613 * SCTID:180968005 - * UMLS:C0581666 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Spinal_Nerve_Root] + * UMLS:C0581666 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Spinal_Nerve_Root ] * ncithesaurus:Lumbar_Spinal_Nerve_Root ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar nerve](../../UBERON/24/UBERON_0009624.md) and [spinal nerve root](../../UBERON/23/UBERON_0009623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0009731.md b/md/UBERON/31/UBERON_0009731.md index 7bd82922fe..e15536a221 100644 --- a/md/UBERON/31/UBERON_0009731.md +++ b/md/UBERON/31/UBERON_0009731.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009731 * *Label* = sublaminar layers S3 or S4 - * *Definition* = One of sublaminar layers S3 or S4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S3 or S4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md)or[sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0010031.md b/md/UBERON/31/UBERON_0010031.md index 202c6974a9..79ef5e56a8 100644 --- a/md/UBERON/31/UBERON_0010031.md +++ b/md/UBERON/31/UBERON_0010031.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010031 * *Label* = 6th arch mesenchyme - * *Definition* = Mesenchyme that is part of a pharyngeal arch 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pharyngeal arch 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 6](../../UBERON/17/UBERON_0003117.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0010131.md b/md/UBERON/31/UBERON_0010131.md index 73cb1fe13a..7388fa3131 100644 --- a/md/UBERON/31/UBERON_0010131.md +++ b/md/UBERON/31/UBERON_0010131.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010131 * *Label* = conducting tissue of heart - * *Definition* = conducting system of heart plus Purkinje fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = conducting system of heart plus Purkinje fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * specialized conducting tissue of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83378] - * specialized muscle tissue of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83378] + * specialized conducting tissue of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83378 ] + * specialized muscle tissue of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83378 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0010231.md b/md/UBERON/31/UBERON_0010231.md index 3e307d894c..192ce03d66 100644 --- a/md/UBERON/31/UBERON_0010231.md +++ b/md/UBERON/31/UBERON_0010231.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0010531.md b/md/UBERON/31/UBERON_0010531.md index 8ae0ae0134..c3f8e48d0f 100644 --- a/md/UBERON/31/UBERON_0010531.md +++ b/md/UBERON/31/UBERON_0010531.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010531 * *Label* = metanephros induced blastemal cells - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.embryology.ch/anglais/turinary/urinhaute03.html] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.embryology.ch/anglais/turinary/urinhaute03.html ] * *Comment* = AO notes: different versions of EMAPA have different labels for the same classes. In vHOG this is part of metanephros cortex but this leads to a cycle in basic. ## Synonyms - * induced blastemal cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001241] - * nephrogenic interstitium of nephrogenic zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17953] - * cap mesenchyme of metanephros of urinary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17645] + * induced blastemal cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001241 ] + * nephrogenic interstitium of nephrogenic zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17953 ] + * cap mesenchyme of metanephros of urinary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17645 ] * nephrogenic interstitium - * peripheral blastema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17953] + * peripheral blastema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17953 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0010931.md b/md/UBERON/31/UBERON_0010931.md index 9fadc07cbf..65b919dfc2 100644 --- a/md/UBERON/31/UBERON_0010931.md +++ b/md/UBERON/31/UBERON_0010931.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010931 * *Label* = intermandibularis - * *Definition* = Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000369] + * *Definition* = Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000369 ] ## Synonyms * intermandibularis muscle - * intermandibular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-060921-12] + * intermandibular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-060921-12 ] ## Cross-references @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the principal muscles used in swallowing.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0011131.md b/md/UBERON/31/UBERON_0011131.md index a4b82b4d2c..e65e7bcd49 100644 --- a/md/UBERON/31/UBERON_0011131.md +++ b/md/UBERON/31/UBERON_0011131.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011131 * *Label* = intermetacarpal joint - * *Definition* = Synovial joint between the bases of adjacent metacarpals. Examples: intermetacarpal joint of right second and third metacarpal bones, intermetacarpal joint of right fourth and fifth metacarpal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35288[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermetacarpal_articulations] + * *Definition* = Synovial joint between the bases of adjacent metacarpals. Examples: intermetacarpal joint of right second and third metacarpal bones, intermetacarpal joint of right fourth and fifth metacarpal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35288, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermetacarpal_articulations ] ## Synonyms - * intermetacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermetacarpal_articulations] - * intermetacarpal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermetacarpal_articulations] + * intermetacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermetacarpal_articulations ] + * intermetacarpal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermetacarpal_articulations ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0011531.md b/md/UBERON/31/UBERON_0011531.md index 511d117c30..2483e37fb1 100644 --- a/md/UBERON/31/UBERON_0011531.md +++ b/md/UBERON/31/UBERON_0011531.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011531 * *Label* = male pubococcygeus muscle - * *Definition* = A pubococcygeus muscle that is part of a male organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pubococcygeus muscle that is part of a male organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * levator prostate * levator prostate muscle - * musculus levator prostatae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus levator prostatae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [pubococcygeus muscle](../../UBERON/28/UBERON_0011528.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0011631.md b/md/UBERON/31/UBERON_0011631.md index 5d1b193463..f0b9f60bb4 100644 --- a/md/UBERON/31/UBERON_0011631.md +++ b/md/UBERON/31/UBERON_0011631.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0011831.md b/md/UBERON/31/UBERON_0011831.md index 4f860ad15d..70800b89ab 100644 --- a/md/UBERON/31/UBERON_0011831.md +++ b/md/UBERON/31/UBERON_0011831.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011831 * *Label* = duct of vestibular gland - * *Definition* = A duct that is part of a vestibular gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a vestibular gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * vestibular gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20097] + * vestibular gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20097 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular gland](../../UBERON/26/UBERON_0011826.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011831 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0011931.md b/md/UBERON/31/UBERON_0011931.md index 4420eb1b00..9e1b974fee 100644 --- a/md/UBERON/31/UBERON_0011931.md +++ b/md/UBERON/31/UBERON_0011931.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011931 * *Label* = nasal hair - * *Definition* = Hair in the nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_hair] + * *Definition* = Hair in the nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_hair ] ## Synonyms - * hair of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53670] - * hair of vestibular part of nose [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53670] - * nose hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53670] + * hair of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53670 ] + * hair of vestibular part of nose [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53670 ] + * nose hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53670 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) and [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0012131.md b/md/UBERON/31/UBERON_0012131.md index 727a02f466..71955fda7f 100644 --- a/md/UBERON/31/UBERON_0012131.md +++ b/md/UBERON/31/UBERON_0012131.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012131 * *Label* = centrale - * *Definition* = Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:AMAO] + * *Definition* = Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:AMAO ] * *Comment* = Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. ## Synonyms * central mesopodium bone - * os centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77232] - * centralia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * os centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77232 ] + * centralia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [centrale endochondral element](../../UBERON/67/UBERON_0015067.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [centrale endochondral element](../../UBERON/67/UBERON_0015067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0012331.md b/md/UBERON/31/UBERON_0012331.md index 7edd526733..efcd202872 100644 --- a/md/UBERON/31/UBERON_0012331.md +++ b/md/UBERON/31/UBERON_0012331.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012331 * *Label* = mesosalpinx - * *Definition* = The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesosalpinx] + * *Definition* = The mesosalpinx is part of the lining of the abdominal cavity in higher vertebrates, specifically the portion of the broad ligament that stretches from the uterine tube to the level of the ovary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesosalpinx ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012331 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0013131.md b/md/UBERON/31/UBERON_0013131.md index d2219313fa..a3baf31c7e 100644 --- a/md/UBERON/31/UBERON_0013131.md +++ b/md/UBERON/31/UBERON_0013131.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013131 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0013231.md b/md/UBERON/31/UBERON_0013231.md index 4eb019c4b3..21595454c1 100644 --- a/md/UBERON/31/UBERON_0013231.md +++ b/md/UBERON/31/UBERON_0013231.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013231 * *Label* = sebaceous gland of eyelid - * *Definition* = Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle. In the same area of the eyelid, near the base of the eyelashes are sweat glands called the 'glands of Moll'. If eyelashes are not kept clean, conditions such as folliculitis may take place, and if the sebaceous gland becomes infected, it can lead to abscesses and styes. The glands of Zeis are named after German ophthalmologist Eduard Zeis (1807b68). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gland_of_Zeis] + * *Definition* = Glands of Zeis are unilobar sebaceous glands located on the margin of the eyelid. The glands of Zeis service the eyelash. These glands produce an oily substance that is issued through the excretory ducts of the sebaceous lobule into the middle portion of the hair follicle. In the same area of the eyelid, near the base of the eyelashes are sweat glands called the 'glands of Moll'. If eyelashes are not kept clean, conditions such as folliculitis may take place, and if the sebaceous gland becomes infected, it can lead to abscesses and styes. The glands of Zeis are named after German ophthalmologist Eduard Zeis (1807b68). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gland_of_Zeis ] ## Synonyms - * ciliary sebaceous gland of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59191] + * ciliary sebaceous gland of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59191 ] * gland of Zeis - * gland of Zeiss [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59191] + * gland of Zeiss [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59191 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) and [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013231 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0013531.md b/md/UBERON/31/UBERON_0013531.md index 0ed8f20be9..d45a403442 100644 --- a/md/UBERON/31/UBERON_0013531.md +++ b/md/UBERON/31/UBERON_0013531.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013531 * *Label* = retrosplenial region - * *Definition* = The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retrosplenial_region] + * *Definition* = The retrosplenial region is a brain area and part of the cingulate cortex. It is defined by Brodmann area 26, Brodmann area 29 and the Brodmann area 30. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retrosplenial_region ] ## Synonyms - * retrosplenial area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RSP] - * retrosplenial cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003977] - * retrosplenial cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retrosplenial_region] + * retrosplenial area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RSP ] + * retrosplenial cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003977 ] + * retrosplenial cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retrosplenial_region ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0013631.md b/md/UBERON/31/UBERON_0013631.md index 921cc36861..c15330d301 100644 --- a/md/UBERON/31/UBERON_0013631.md +++ b/md/UBERON/31/UBERON_0013631.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013631 * *Label* = sesamoid element - * *Definition* = Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000137] + * *Definition* = Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000137 ] * *Comment* = Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage. ## Synonyms - * sesamoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000137] + * sesamoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000137 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0013731.md b/md/UBERON/31/UBERON_0013731.md index aabdb5802c..994e32a36c 100644 --- a/md/UBERON/31/UBERON_0013731.md +++ b/md/UBERON/31/UBERON_0013731.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013731 * *Label* = basilar papilla - * *Definition* = the auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_papilla] + * *Definition* = the auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_papilla ] ## Synonyms - * papilla basilaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0011018[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basilar papillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * papilla basilaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0011018, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basilar papillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0014531.md b/md/UBERON/31/UBERON_0014531.md index 7f2568ef33..6bef96ecb3 100644 --- a/md/UBERON/31/UBERON_0014531.md +++ b/md/UBERON/31/UBERON_0014531.md @@ -6,7 +6,7 @@ ## Synonyms - * diencephalon lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62449] + * diencephalon lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62449 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina of neuraxis](../../UBERON/30/UBERON_0014530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014531 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0014631.md b/md/UBERON/31/UBERON_0014631.md index 21579705c1..ac51e7fc66 100644 --- a/md/UBERON/31/UBERON_0014631.md +++ b/md/UBERON/31/UBERON_0014631.md @@ -6,17 +6,17 @@ ## Synonyms - * commissura grisea posterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * dorsal grey commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77037] - * posterior grey commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77037] - * spinal cord posterior gray commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2677[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * commissura grisea posterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * dorsal grey commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77037 ] + * posterior grey commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77037 ] + * spinal cord posterior gray commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2677, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * FMA:77037 * NIF_GrossAnatomy:birnlex_2677 * SCTID:21169000 - * UMLS:C0228573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2677] + * UMLS:C0228573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2677 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014631 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0014731.md b/md/UBERON/31/UBERON_0014731.md index bafcc569dd..fb166d57ae 100644 --- a/md/UBERON/31/UBERON_0014731.md +++ b/md/UBERON/31/UBERON_0014731.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014731 * *Label* = haversian canal - * *Definition* = Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Haversian_canal] + * *Definition* = Haversian canals are a series of tubes around narrow channels formed by lamellae. This is the region of bone called compact bone. Osteons are arranged in parallel to the long axis of the bone. The Haversian canals surround blood vessels and nerve cells throughout the bone and communicate with osteocytes in lacunae (spaces within the dense bone matrix that contain the living bone cells) through canaliculi. This unique arrangement is conducive to mineral salt deposits and storage which gives bone tissue its strength. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haversian_canal ] ## Synonyms - * haversian canals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Haversian_canal] - * nutrient canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A10.165.265.507] + * haversian canals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haversian_canal ] + * nutrient canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A10.165.265.507 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical conduit](../../UBERON/11/UBERON_0004111.md) and [part_of](../../BFO/50/BFO_0000050.md) some [osteon](../../UBERON/30/UBERON_0014730.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014731 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0014931.md b/md/UBERON/31/UBERON_0014931.md index 9be22f5bcf..341b883da7 100644 --- a/md/UBERON/31/UBERON_0014931.md +++ b/md/UBERON/31/UBERON_0014931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014931 * *Label* = periungual skin - * *Definition* = A zone of skin adjacent to a nail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A zone of skin adjacent to a nail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014931 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_0015031.md b/md/UBERON/31/UBERON_0015031.md index 9122e9a848..2fa4642b0e 100644 --- a/md/UBERON/31/UBERON_0015031.md +++ b/md/UBERON/31/UBERON_0015031.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015031 * *Label* = pedal digit 1 phalanx endochondral element - * *Definition* = A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 1 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 1 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 1 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 1 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit 1 phalanx cartilage element](../../UBERON/80/UBERON_0010680.md)or[pedal digit 1 phalanx pre-cartilage condensation](../../UBERON/80/UBERON_0010580.md)or[pedal digit 1 phalanx](../../UBERON/40/UBERON_0003640.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015031 + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2000331.md b/md/UBERON/31/UBERON_2000331.md index 9559561944..56b0203328 100644 --- a/md/UBERON/31/UBERON_2000331.md +++ b/md/UBERON/31/UBERON_2000331.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2000731.md b/md/UBERON/31/UBERON_2000731.md index 59aa17dedf..017fae8415 100644 --- a/md/UBERON/31/UBERON_2000731.md +++ b/md/UBERON/31/UBERON_2000731.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000731 * *Label* = somite 27 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 27 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2000831.md b/md/UBERON/31/UBERON_2000831.md index 4dc1453f91..7ee1bd6e6d 100644 --- a/md/UBERON/31/UBERON_2000831.md +++ b/md/UBERON/31/UBERON_2000831.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000831 * *Label* = sclerotome somite 17 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2000931.md b/md/UBERON/31/UBERON_2000931.md index 50b2837bb1..eff61b5b0e 100644 --- a/md/UBERON/31/UBERON_2000931.md +++ b/md/UBERON/31/UBERON_2000931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000931 * *Label* = myotome somite 27 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001231.md b/md/UBERON/31/UBERON_2001231.md index ac094dd3aa..ba99662c64 100644 --- a/md/UBERON/31/UBERON_2001231.md +++ b/md/UBERON/31/UBERON_2001231.md @@ -6,9 +6,9 @@ ## Synonyms - * branchial arch 2 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001231] - * gill arch 2 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001231] - * visceral arch 4 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001231] + * branchial arch 2 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001231 ] + * gill arch 2 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001231 ] + * visceral arch 4 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001231 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001431.md b/md/UBERON/31/UBERON_2001431.md index d7c6411439..055611a8b3 100644 --- a/md/UBERON/31/UBERON_2001431.md +++ b/md/UBERON/31/UBERON_2001431.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001531.md b/md/UBERON/31/UBERON_2001531.md index 20f18953bf..7ed3b01ed5 100644 --- a/md/UBERON/31/UBERON_2001531.md +++ b/md/UBERON/31/UBERON_2001531.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001531 * *Label* = epibranchial 4 cartilage - * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001731.md b/md/UBERON/31/UBERON_2001731.md index 1dd4eebf5a..9c487fe6c2 100644 --- a/md/UBERON/31/UBERON_2001731.md +++ b/md/UBERON/31/UBERON_2001731.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001731 * *Label* = caudal principal ray 19 - * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 18. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal principal ray that is ventrally adjacent to caudal principal ray 18. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For reference, see Weitzman and Fink 1985 Figure 8. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001831.md b/md/UBERON/31/UBERON_2001831.md index 9f1a7de0e8..8a3d9f844b 100644 --- a/md/UBERON/31/UBERON_2001831.md +++ b/md/UBERON/31/UBERON_2001831.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001831 * *Label* = pterosphenoid-orbitosphenoid joint - * *Definition* = Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [orbitosphenoid](../../UBERON/78/UBERON_0002478.md) and [core#connects](../../ts/core#connects.md) some [pterosphenoid](../../UBERON/19/UBERON_2000419.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2001931.md b/md/UBERON/31/UBERON_2001931.md index f4223de4cc..8721eb7300 100644 --- a/md/UBERON/31/UBERON_2001931.md +++ b/md/UBERON/31/UBERON_2001931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001931 * *Label* = infranuchal scute - * *Definition* = Scute that is an elongated plate associated with a ligament running between posterior nuchal plate and rib on vertebra 6. Infranuchal scute is paired and develops from its associated ligament and sensory canal tubular ossicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scute that is an elongated plate associated with a ligament running between posterior nuchal plate and rib on vertebra 6. Infranuchal scute is paired and develops from its associated ligament and sensory canal tubular ossicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2002031.md b/md/UBERON/31/UBERON_2002031.md index 46812a4fc5..01da10f06a 100644 --- a/md/UBERON/31/UBERON_2002031.md +++ b/md/UBERON/31/UBERON_2002031.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002031 * *Label* = orbital foramen - * *Definition* = Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2002131.md b/md/UBERON/31/UBERON_2002131.md index ce74f99611..45cf406be6 100644 --- a/md/UBERON/31/UBERON_2002131.md +++ b/md/UBERON/31/UBERON_2002131.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002131 * *Label* = obsolete horizontal septum - * *Definition* = Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003901 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_2005031.md b/md/UBERON/31/UBERON_2005031.md index 89009269bd..602ce1eb14 100644 --- a/md/UBERON/31/UBERON_2005031.md +++ b/md/UBERON/31/UBERON_2005031.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005031 * *Label* = dorsal longitudinal vein - * *Definition* = Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * DLV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005031] + * DLV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005031 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_2005231.md b/md/UBERON/31/UBERON_2005231.md index 0cb49e0c33..403e329c84 100644 --- a/md/UBERON/31/UBERON_2005231.md +++ b/md/UBERON/31/UBERON_2005231.md @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_2007031.md b/md/UBERON/31/UBERON_2007031.md index a5a8a805dd..1d8cde927a 100644 --- a/md/UBERON/31/UBERON_2007031.md +++ b/md/UBERON/31/UBERON_2007031.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3000031.md b/md/UBERON/31/UBERON_3000031.md index 401d1e6a72..1f65977039 100644 --- a/md/UBERON/31/UBERON_3000031.md +++ b/md/UBERON/31/UBERON_3000031.md @@ -6,13 +6,13 @@ ## Synonyms - * apophyse ascendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * cartilage craniofacial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * oberste abteilung des zweiten visceralbogens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * pedicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * pediculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * processus ascendens of palatoquadrate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] - * schlafenflugelknorpel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000031] + * apophyse ascendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * cartilage craniofacial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * oberste abteilung des zweiten visceralbogens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * pedicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * pediculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * processus ascendens of palatoquadrate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] + * schlafenflugelknorpel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000031 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3000131.md b/md/UBERON/31/UBERON_3000131.md index 0a9c250f7d..eb814f8772 100644 --- a/md/UBERON/31/UBERON_3000131.md +++ b/md/UBERON/31/UBERON_3000131.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000131 * *Label* = dilatatio alaris - * *Definition* = Flange that extends ventrally from about the middle portion of the margo mandibularis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Flange that extends ventrally from about the middle portion of the margo mandibularis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * ventral flange of anterior ramus of pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000131] + * ventral flange of anterior ramus of pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000131 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3000431.md b/md/UBERON/31/UBERON_3000431.md index c4e1a0767a..895cf90baf 100644 --- a/md/UBERON/31/UBERON_3000431.md +++ b/md/UBERON/31/UBERON_3000431.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3000831.md b/md/UBERON/31/UBERON_3000831.md index 8d338b4076..5247a42432 100644 --- a/md/UBERON/31/UBERON_3000831.md +++ b/md/UBERON/31/UBERON_3000831.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000831 * *Label* = spina acromioidea - * *Definition* = Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3000931.md b/md/UBERON/31/UBERON_3000931.md index c811c06626..14b6e5c78d 100644 --- a/md/UBERON/31/UBERON_3000931.md +++ b/md/UBERON/31/UBERON_3000931.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000931 * *Label* = intercalary element of hind digit - * *Definition* = Small elements present in all digits of the pes, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small elements present in all digits of the pes, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010031.md b/md/UBERON/31/UBERON_3010031.md index 87f673e4d7..e05d8493ba 100644 --- a/md/UBERON/31/UBERON_3010031.md +++ b/md/UBERON/31/UBERON_3010031.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010131.md b/md/UBERON/31/UBERON_3010131.md index e7657d924a..5f04bc4c9a 100644 --- a/md/UBERON/31/UBERON_3010131.md +++ b/md/UBERON/31/UBERON_3010131.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010131 * *Label* = orbital cartilages - * *Definition* = Forms lateral walls of braincase, confluent posteriorly with otic capsules via taenia tecti marginalis and anteriorly with lamina orbitonasalis via sphenethmoid commissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Forms lateral walls of braincase, confluent posteriorly with otic capsules via taenia tecti marginalis and anteriorly with lamina orbitonasalis via sphenethmoid commissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010231.md b/md/UBERON/31/UBERON_3010231.md index fcd5085588..3bbf8e4ed6 100644 --- a/md/UBERON/31/UBERON_3010231.md +++ b/md/UBERON/31/UBERON_3010231.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010331.md b/md/UBERON/31/UBERON_3010331.md index 26fe44021c..2f9ee92c9e 100644 --- a/md/UBERON/31/UBERON_3010331.md +++ b/md/UBERON/31/UBERON_3010331.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0012285 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_3010431.md b/md/UBERON/31/UBERON_3010431.md index c2b4e3805e..fcb4889986 100644 --- a/md/UBERON/31/UBERON_3010431.md +++ b/md/UBERON/31/UBERON_3010431.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010631.md b/md/UBERON/31/UBERON_3010631.md index 18c922e382..a3740ed306 100644 --- a/md/UBERON/31/UBERON_3010631.md +++ b/md/UBERON/31/UBERON_3010631.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010631 * *Label* = obsolete Stiftchenzellen - * *Definition* = Possibly chemoreceptor cells in anuran larvae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Possibly chemoreceptor cells in anuran larvae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] * *Comment* = replace with CL_0007017 once CL is released. ## Synonyms @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/31/UBERON_3010731.md b/md/UBERON/31/UBERON_3010731.md index b561b9179f..a4a2ed6a57 100644 --- a/md/UBERON/31/UBERON_3010731.md +++ b/md/UBERON/31/UBERON_3010731.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010731 * *Label* = M. coracobrachialis brevis - * *Definition* = Muscle which originates on the dorsal surface of the coracoid and scapula and inserts on the deltoid crest of the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates on the dorsal surface of the coracoid and scapula and inserts on the deltoid crest of the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_3010831.md b/md/UBERON/31/UBERON_3010831.md index bdabb63d18..2ab6c69cf7 100644 --- a/md/UBERON/31/UBERON_3010831.md +++ b/md/UBERON/31/UBERON_3010831.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010831 * *Label* = occipito-petrosal - * *Definition* = Fusion of the occipital segment or occipital ring and otic capsule (Francis, 1934). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Fusion of the occipital segment or occipital ring and otic capsule (Francis, 1934). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms * occipital-petrosal * occipito-otic - * otic-occipital complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Phenoscape:DB] + * otic-occipital complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Phenoscape:DB ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_4200031.md b/md/UBERON/31/UBERON_4200031.md index a2a23c79d6..76dccf491b 100644 --- a/md/UBERON/31/UBERON_4200031.md +++ b/md/UBERON/31/UBERON_4200031.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_4200131.md b/md/UBERON/31/UBERON_4200131.md index 36ebc565f2..db172a231b 100644 --- a/md/UBERON/31/UBERON_4200131.md +++ b/md/UBERON/31/UBERON_4200131.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/31/UBERON_4300031.md b/md/UBERON/31/UBERON_4300031.md index e9f7445b83..489e7828d1 100644 --- a/md/UBERON/31/UBERON_4300031.md +++ b/md/UBERON/31/UBERON_4300031.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0000032.md b/md/UBERON/32/UBERON_0000032.md index d9b5898a65..4bc189c34d 100644 --- a/md/UBERON/32/UBERON_0000032.md +++ b/md/UBERON/32/UBERON_0000032.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000032 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/32/UBERON_0000332.md b/md/UBERON/32/UBERON_0000332.md index 6a08d24a35..3e9c956f93 100644 --- a/md/UBERON/32/UBERON_0000332.md +++ b/md/UBERON/32/UBERON_0000332.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000332 * *Label* = yellow bone marrow - * *Definition* = bone marrow in which the fat cells predominate in the meshes of the reticular network. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/Yellow+Marrow] + * *Definition* = bone marrow in which the fat cells predominate in the meshes of the reticular network. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/Yellow+Marrow ] ## Synonyms - * medulla ossium flava [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000635[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fat marrow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000635] - * yellow marrow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000635] + * medulla ossium flava [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000635, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fat marrow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000635 ] + * yellow marrow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000635 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone marrow](../../UBERON/71/UBERON_0002371.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [fat cell](../../CL/36/CL_0000136.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0000432.md b/md/UBERON/32/UBERON_0000432.md index 7ded98e25d..e800274616 100644 --- a/md/UBERON/32/UBERON_0000432.md +++ b/md/UBERON/32/UBERON_0000432.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000432 * *Label* = endopeduncular nucleus - * *Definition* = A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.730.385.800.240] + * *Definition* = A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.730.385.800.240 ] * *Comment* = The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN] ## Synonyms * entopeduncular nucleus - * nucleus endopeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002475] + * nucleus endopeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002475 ] * nucleus entopeduncularis ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0000932.md b/md/UBERON/32/UBERON_0000932.md index 7e99a79ce6..65ecaaf4ce 100644 --- a/md/UBERON/32/UBERON_0000932.md +++ b/md/UBERON/32/UBERON_0000932.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000482 * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005814 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000932 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/32/UBERON_0001032.md b/md/UBERON/32/UBERON_0001032.md index e6a94f0d21..dccb960399 100644 --- a/md/UBERON/32/UBERON_0001032.md +++ b/md/UBERON/32/UBERON_0001032.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001032 * *Label* = sensory system - * *Definition* = Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_system] + * *Definition* = Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_system ] * *Comment* = note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs ## Synonyms - * organa sensuum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75259[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organa sensuum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75259, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sense organ subsystem - * sense organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75259] - * sense organs set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75259] + * sense organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75259 ] + * sense organs set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75259 ] * sensory subsystem - * sensory systems [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000282[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * organa sensuum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sensory systems [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000282, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * organa sensuum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sensory organ system - * set of sense organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75259] + * set of sense organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75259 ] ## Cross-references @@ -49,7 +49,7 @@ * [anatomical system](../../UBERON/67/UBERON_0000467.md) * [part_of](../../BFO/50/BFO_0000050.md) some [entire sense organ system](../../UBERON/56/UBERON_0004456.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) ## Equivalencies @@ -61,8 +61,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001132.md b/md/UBERON/32/UBERON_0001132.md index 190238f0a8..4a9d1fac45 100644 --- a/md/UBERON/32/UBERON_0001132.md +++ b/md/UBERON/32/UBERON_0001132.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001132 * *Label* = parathyroid gland - * *Definition* = The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parathyroid_gland] + * *Definition* = The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parathyroid_gland ] * *Comment* = Development notes: table 13.1 of Kardong is used to create the taxon-specific developmental relationships here, although some omissions are made for simplicity. Additional notes: Parathyroid glands are found in all adult tetrapods, although they vary in their number, and in their exact position. Mammals typically have four parathyroids, while other groups typically have six. Fish do not possess parathyroid glands, although the ultimobranchial glands, which are found close to the oesophagus, may have a similar function and could even be homologous with the tetrapod parathyroids. Even these glands are absent in the most primitive vertebrates, the jawless fish, but as these species have no bone in their skeletons, only cartilage, it may be that they have less need to regulate calcium metabolism. The conserved homology of genes and calcium-sensing receptors in fish gills with those in the parathryroid glands of birds and mammals is recognized by evolutionary developmental biology as evolution-using genes and gene networks in novel ways to generate new structures with some similar functions and novel functions[WP]. The parathryoid gland is not formed in fish, but is only found in tetrapods. In humans and chick it emerges from pouches 3 and 4, but in mice it is exclusively generated by the third pouch[PMID:16313389] ## Synonyms @@ -26,7 +26,7 @@ * MESH:A06.407.560 * MIAA:0000082 * SCTID:181121007 - * UMLS:C0030518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parathyroid_Gland] + * UMLS:C0030518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parathyroid_Gland ] * VHOG:0001188 * Wikipedia:Parathyroid_gland * XAO:0000167 @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The evolution of the tetrapods, and the shift from an aquatic to a terrestrial environment, was believed to have required new controls for regulating calcium homeostasis, and thus the evolution of parathyroid glands (...) both the tetrapod parathyroid and the gills of fish contribute to the regulation of extracellular calcium levels. It is therefore reasonable to suggest that the parathyroid gland evolved as a result of the transformation of the gills into the parathyroid glands of tetrapods and the transition from an aquatic to a terrestrial environment. This interpretation would also explain the positioning of the parathyroid gland within the pharynx in the tetrapod body. Were the parathyroid gland to have emerged de novo with the evolution of the tetrapods it could, as an endocrine organ, have been placed anywhere in the body and still exert its effect.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001232.md b/md/UBERON/32/UBERON_0001232.md index 1d6fdfba56..c39578440e 100644 --- a/md/UBERON/32/UBERON_0001232.md +++ b/md/UBERON/32/UBERON_0001232.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001232 * *Label* = collecting duct of renal tubule - * *Definition* = The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072044[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Collecting_tubule] + * *Definition* = The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072044, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Collecting_tubule ] * *Comment* = note that in ISBN10:0073040584 "Vertebrates, Kardong", the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO. Wikipedia says: Many sources include the connecting tubule as part of the collecting duct system. However, the embryological origin is more similar to the nephron than it is to the rest of the collecting duct (which derives from the ureteric bud), and other sources therefore classify the connecting tubule with the nephron ## Synonyms - * collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072044] + * collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072044 ] * kidney collecting duct - * renal collecting tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15628] - * tubulus renalis arcuatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Connecting_tubule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * renal collecting tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15628 ] + * tubulus renalis arcuatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Connecting_tubule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tubulus renalis colligens - * arcuate renal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Connecting_tubule] - * collecting duct system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000761] + * arcuate renal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Connecting_tubule ] + * collecting duct system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000761 ] * collecting tubule - * junctional tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Connecting_tubule] + * junctional tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Connecting_tubule ] * kidney collecting tubule ## Cross-references @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Renal duct that collects the output from renal tubules.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001332.md b/md/UBERON/32/UBERON_0001332.md index 00cfb2c36a..fb61ac7326 100644 --- a/md/UBERON/32/UBERON_0001332.md +++ b/md/UBERON/32/UBERON_0001332.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001332 * *Label* = prepuce of penis - * *Definition* = In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foreskin] + * *Definition* = In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foreskin ] ## Synonyms - * penile prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19639] - * prepuce of male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18989] - * prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000407[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foreskin] - * preputium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0100587] - * foreskin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19639] - * praeputium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foreskin[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prepucium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foreskin[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * penile prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19639 ] + * prepuce of male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18989 ] + * prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000407, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foreskin ] + * preputium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0100587 ] + * foreskin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19639 ] + * praeputium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foreskin, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prepucium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foreskin, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0000407 * OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA * SCTID:181426005 - * UMLS:C0227952 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Male_Prepuce] + * UMLS:C0227952 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Male_Prepuce ] * Wikipedia:Foreskin * http://upload.wikimedia.org/wikipedia/commons/e/e6/Foreskin_CloseupV2.jpg * http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001432.md b/md/UBERON/32/UBERON_0001432.md index 72eeea78da..68cd71d83f 100644 --- a/md/UBERON/32/UBERON_0001432.md +++ b/md/UBERON/32/UBERON_0001432.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001432 * *Label* = distal carpal bone 3 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitate_bone] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitate_bone ] * *Comment* = Taxon notes: medially located and articulates with metacarpals 2-4, distal carpal 5 and the intermedium[VSAO] In the human hand, the capitate bone is the largest of the carpal bones, and occupies the center of the wrist - The capitate articulates with seven bones: the scaphoid and lunate proximally, the second metacarpal, third metacarpal, and fourth metacarpal distally, the lesser multangular on the radial side, and the hamate on the ulnar side[WP] ## Synonyms - * capitate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001342] - * capitate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23727] - * distal carpal 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005045] - * os magnum (carpus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23727] - * carpal 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000849] - * hand distal carpal bone 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001342] - * magnum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005045] - * os capitatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitate_bone] + * capitate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001342 ] + * capitate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23727 ] + * distal carpal 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005045 ] + * os magnum (carpus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23727 ] + * carpal 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000849 ] + * hand distal carpal bone 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001342 ] + * magnum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005045 ] + * os capitatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitate_bone ] * os magnum ## Cross-references @@ -25,7 +25,7 @@ * MA:0001342 * OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA * SCTID:181964001 - * UMLS:C0223733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Capitate_Bone] + * UMLS:C0223733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Capitate_Bone ] * VSAO:0005045 * Wikipedia:Capitate_bone * galen:Capitate @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal bone 3 endochondral element](../../UBERON/90/UBERON_0015090.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001532.md b/md/UBERON/32/UBERON_0001532.md index 59350c2ede..2a76988dc5 100644 --- a/md/UBERON/32/UBERON_0001532.md +++ b/md/UBERON/32/UBERON_0001532.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001532 * *Label* = internal carotid artery - * *Definition* = In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_carotid_artery] + * *Definition* = In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_carotid_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * ICA - * arteria carotis interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_carotid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria carotis interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_carotid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA * SCTID:362045001 * TAO:0005081 - * UMLS:C0007276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Carotid_Artery] + * UMLS:C0007276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Carotid_Artery ] * VHOG:0000267 * Wikipedia:Internal_carotid_artery * XAO:0000366 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the major arteries of the head, it is the as the cranial continuation of the aortic arches and the dorsal aorta. It curves ventrally before resuming a dorsal course as it enters the head proper, and it lies ventral to the internal jugular vein. The internal carotid artery gives off palatine, ophthalmic, and cerebral branches by stage NF stage 41.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001632.md b/md/UBERON/32/UBERON_0001632.md index aedc059983..84f6301f2f 100644 --- a/md/UBERON/32/UBERON_0001632.md +++ b/md/UBERON/32/UBERON_0001632.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001632 * *Label* = temporal artery - * *Definition* = In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_artery] + * *Definition* = In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * GAID:489 * MA:0002061 * MESH:A07.231.114.228.868 - * UMLS:C0039482 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Artery] + * UMLS:C0039482 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Artery ] * Wikipedia:Temporal_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png * ncithesaurus:Temporal_Artery @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of lateral pretrosal artery which supplies blood to the eyelids.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of lateral pretrosal artery (AAO:0010494)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001732.md b/md/UBERON/32/UBERON_0001732.md index b132e3732b..843c4e0009 100644 --- a/md/UBERON/32/UBERON_0001732.md +++ b/md/UBERON/32/UBERON_0001732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001732 * *Label* = pharyngeal tonsil - * *Definition* = Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_tonsil] + * *Definition* = Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_tonsil ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,8 +11,8 @@ * adenoid * nasopharyngeal tonsil * tonsil of luschka - * Rachenmandel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000777] - * tonsilla pharyngea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_tonsil[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Rachenmandel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000777 ] + * tonsilla pharyngea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_tonsil, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0000774 * MESH:A15.382.520.604.084 * SCTID:181199001 - * UMLS:C0001428 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Tonsil] + * UMLS:C0001428 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Tonsil ] * Wikipedia:Pharyngeal_tonsil * http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001832.md b/md/UBERON/32/UBERON_0001832.md index c3c9c29615..180564d66b 100644 --- a/md/UBERON/32/UBERON_0001832.md +++ b/md/UBERON/32/UBERON_0001832.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001832 * *Label* = sublingual gland - * *Definition* = The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_gland] + * *Definition* = The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_gland ] * *Comment* = Single lobed in mouse; largest acini of the 3 rodent salivary glands. In human and mouse, secretions are predominantly mucinous[ISBN10:0123813611] ## Synonyms * Rivinus' gland * ductus sublingualis - * Rivinus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001315] - * glandula sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Rivinus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001315 ] + * glandula sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sublingual salivary gland - * submaxillary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001589] + * submaxillary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001589 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0001588 * MESH:A10.336.779.687 * SCTID:362176005 - * UMLS:C0038553 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sublingual_Salivary_Gland] + * UMLS:C0038553 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sublingual_Salivary_Gland ] * VHOG:0000363 * Wikipedia:Sublingual_gland * http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of a pair of small salivary glands situated under the mucous membrane of the floor of the mouth, beneath the tongue. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most mammals have well-developed parotid, mandibular, and sublingual glands.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0001932.md b/md/UBERON/32/UBERON_0001932.md index d006846643..d80b66c724 100644 --- a/md/UBERON/32/UBERON_0001932.md +++ b/md/UBERON/32/UBERON_0001932.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001932 * *Label* = arcuate nucleus of hypothalamus - * *Definition* = The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_nucleus] + * *Definition* = The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,16 +15,16 @@ * infundibular hypothalamic nucleus * infundibular nucleus * infundibular periventricular nucleus - * nucleus arcuatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62329[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ArcH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1638[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * arcuate nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:395] - * infracerebellar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Inf] - * nucleus arcuatus (hypothalamus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:395[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus arcuatus hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002473] - * nucleus arcuatus hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus infundibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002473] - * nucleus infundibularis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:395[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus semilunaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002473] + * nucleus arcuatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62329, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ArcH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1638, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * arcuate nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:395 ] + * infracerebellar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Inf ] + * nucleus arcuatus (hypothalamus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:395, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus arcuatus hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002473 ] + * nucleus arcuatus hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus infundibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002473 ] + * nucleus infundibularis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:395, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus semilunaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002473 ] ## Cross-references @@ -42,9 +42,9 @@ * MA:0000847 * MESH:A08.186.211.730.385.357.352.081 * NIF_GrossAnatomy:birnlex_1638 - * NeuroNames:395 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1638] - * UMLS:C0003741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1638] - * UMLS:C0003741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arcuate_Nucleus] + * NeuroNames:395 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1638 ] + * UMLS:C0003741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1638 ] + * UMLS:C0003741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arcuate_Nucleus ] * Wikipedia:Arcuate_nucleus * http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -69,8 +69,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002032.md b/md/UBERON/32/UBERON_0002032.md index 57c83275c4..2b92b8b5fe 100644 --- a/md/UBERON/32/UBERON_0002032.md +++ b/md/UBERON/32/UBERON_0002032.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002032 * *Label* = areola - * *Definition* = Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Areola] + * *Definition* = Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Areola ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * areola mammae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Areola[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * areolae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * areola mammae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Areola, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * areolae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:67796 * MA:0000788 * OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA - * UMLS:C0222608 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Areola] + * UMLS:C0222608 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Areola ] * Wikipedia:Areola * http://upload.wikimedia.org/wikipedia/commons/a/ad/Female_Areola.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Brustwarze.JPG/200px-Brustwarze.JPG @@ -43,8 +43,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = areolar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002132.md b/md/UBERON/32/UBERON_0002132.md index f6aa73471e..2284c097ad 100644 --- a/md/UBERON/32/UBERON_0002132.md +++ b/md/UBERON/32/UBERON_0002132.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002132 * *Label* = dentate nucleus - * *Definition* = The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_nucleus] + * *Definition* = The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * dentate cerebellar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1171] + * dentate cerebellar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1171 ] * lateral cerebellar nucleus * lateral nucleus of cerebellum - * dentate nucleus (Vicq d'Azyr) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:683] - * dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_nucleus] - * dentatothalamocortical fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_nucleus] - * nucleus dentatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dentatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_nucleus] - * nucleus dentatus cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:683[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus lateralis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:683[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dentate nucleus (Vicq d'Azyr) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:683 ] + * dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_nucleus ] + * dentatothalamocortical fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_nucleus ] + * nucleus dentatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_nucleus ] + * nucleus dentatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dentatus cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:683, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus lateralis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:683, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,9 +30,9 @@ * FMA:72260 * MA:0001008 * NIF_GrossAnatomy:birnlex_1171 - * NeuroNames:683 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1171] + * NeuroNames:683 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1171 ] * SCTID:279221005 - * UMLS:C0086120 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1171] + * UMLS:C0086120 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1171 ] * VHOG:0001700 * Wikipedia:Dentate_nucleus * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008996 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002232.md b/md/UBERON/32/UBERON_0002232.md index b6adbea70a..7e0db2d016 100644 --- a/md/UBERON/32/UBERON_0002232.md +++ b/md/UBERON/32/UBERON_0002232.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002232 * *Label* = olfactory gland - * *Definition* = Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_glands] + * *Definition* = Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_glands ] ## Synonyms * olfactory gland of Bowman * Bowman's gland - * glandulae olfactoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_glands[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandulae olfactoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_glands, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multicellular mucous glands of the olfactory epithelium, present only in adults.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002432.md b/md/UBERON/32/UBERON_0002432.md index 2eba672f6c..107047180c 100644 --- a/md/UBERON/32/UBERON_0002432.md +++ b/md/UBERON/32/UBERON_0002432.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002432 * *Label* = pars intermedia of adenohypophysis - * *Definition* = boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pars_intermedia] + * *Definition* = boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pars_intermedia ] * *Comment* = The intermediate part of adenohypophysis: an ill-defined region between the two lobes of the hypophysis; some systems of nomenclature consider it part of the neurohypophysis. In humans a defined structure develops during embryogenesis, but only scattered cells are retained when the gland matures[BTO]. ## Synonyms * intermediate lobe of adenohypophysis * intermediate lobe of pituitary - * pars intermedia (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74632[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000855] - * pars intermedia adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74632[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars intermedia of anterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74632] - * intermediate lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001788] - * pars intermedia adenohypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001788] - * pars intermedia adenohypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pars_intermedia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars intermedia lobi anterior hypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001788] + * pars intermedia (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74632, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000855 ] + * pars intermedia adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74632, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars intermedia of anterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74632 ] + * intermediate lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001788 ] + * pars intermedia adenohypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001788 ] + * pars intermedia adenohypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pars_intermedia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars intermedia lobi anterior hypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001788 ] ## Cross-references @@ -61,8 +61,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002532.md b/md/UBERON/32/UBERON_0002532.md index 5d24efd621..2a76ce0eaa 100644 --- a/md/UBERON/32/UBERON_0002532.md +++ b/md/UBERON/32/UBERON_0002532.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002532 * *Label* = epiblast (generic) - * *Definition* = In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiblast[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiblast, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class ## Synonyms - * epiblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000243] + * epiblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000243 ] * blastocyst - * ectoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] - * epiblastus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primitive ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000243] + * ectoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] + * epiblastus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primitive ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000243 ] ## Cross-references @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In pregastrula zebrafish embryos, the epiblast is an inverted cup of cells that sits on top of a large yolk cell. (...) In amniote embryos (mammals and birds), gastrulation initiates in an epithelial layer called the epiblast. Cells in the epiblast undergo an epithelial to mesenchymal transition (EMT), migrate through the primitive streak (PS), and incorporate in the middle (mesoderm) or outer (endoderm) layer. The presumptive definitive endoderm (DE) cells invade and displace an outer layer of extraembryonic tissue cells, the hypoblast in chick and the visceral endoderm (VE) in mouse, which form supporting structures such as the yolk sac.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002632.md b/md/UBERON/32/UBERON_0002632.md index f696da1075..2e59ad78bd 100644 --- a/md/UBERON/32/UBERON_0002632.md +++ b/md/UBERON/32/UBERON_0002632.md @@ -7,16 +7,16 @@ ## Synonyms * medial mammillary nucleus (carpenter) - * medial mammillary nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62345] - * medial mammillary nucleus, median part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62345] - * medial subdivision of medial mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62345] - * MML [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1220[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medial mamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MM] - * medial mammillary nucleus median part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MMme] - * medial mammillary nucleus, body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MM] - * medial part of the medial mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:415] - * nucleus corporis mamillaris medialis, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:415[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis corpus mamillaris (Shantha) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:415[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medial mammillary nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62345 ] + * medial mammillary nucleus, median part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62345 ] + * medial subdivision of medial mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62345 ] + * MML [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1220, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medial mamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MM ] + * medial mammillary nucleus median part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MMme ] + * medial mammillary nucleus, body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MM ] + * medial part of the medial mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:415 ] + * nucleus corporis mamillaris medialis, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:415, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis corpus mamillaris (Shantha) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:415, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * BAMS:Mmme * FMA:62345 * NIF_GrossAnatomy:birnlex_1220 - * NeuroNames:415 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1220] - * UMLS:C0694605 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1220] + * NeuroNames:415 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1220 ] + * UMLS:C0694605 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1220 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002732.md b/md/UBERON/32/UBERON_0002732.md index 3b69df5b6a..160abab183 100644 --- a/md/UBERON/32/UBERON_0002732.md +++ b/md/UBERON/32/UBERON_0002732.md @@ -6,13 +6,13 @@ ## Synonyms - * fibrae pontis longitudinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72513[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * longitudinal fasciculus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72513] - * longitudinal pontine fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72513] - * longitudinal pontine fibres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72513] - * longitudinal pontine tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72513] - * corticofugal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:618] - * fasiculii longitudinales pyramidales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:618[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fibrae pontis longitudinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72513, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * longitudinal fasciculus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72513 ] + * longitudinal pontine fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72513 ] + * longitudinal pontine fibres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72513 ] + * longitudinal pontine tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72513 ] + * corticofugal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:618 ] + * fasiculii longitudinales pyramidales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:618, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,9 +20,9 @@ * BAMS:lp * FMA:72513 * NIF_GrossAnatomy:birnlex_1523 - * NeuroNames:618 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1523] + * NeuroNames:618 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1523 ] * SCTID:361544009 - * UMLS:C0228450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1523] + * UMLS:C0228450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1523 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002832.md b/md/UBERON/32/UBERON_0002832.md index a9ec3eafb1..95395307d2 100644 --- a/md/UBERON/32/UBERON_0002832.md +++ b/md/UBERON/32/UBERON_0002832.md @@ -6,8 +6,8 @@ ## Synonyms - * anterior nucleus of trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72477] - * nucleus anterior corporis trapezoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72477[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior nucleus of trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72477 ] + * nucleus anterior corporis trapezoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72477, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,8 +15,8 @@ * NIF_GrossAnatomy:birnlex_2576 * NeuroNames:1283 * SCTID:369020000 - * UMLS:C0228437 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2576] - * UMLS:C1289449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2576] + * UMLS:C0228437 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2576 ] + * UMLS:C1289449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2576 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0002932.md b/md/UBERON/32/UBERON_0002932.md index 3c472216c2..77b4254ddf 100644 --- a/md/UBERON/32/UBERON_0002932.md +++ b/md/UBERON/32/UBERON_0002932.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002932 * *Label* = trapezoid body - * *Definition* = The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezoid_body] + * *Definition* = The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezoid_body ] ## Synonyms - * tz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_707[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpus trapezoides [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:594[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus trapezoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezoid_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trapezoid body (Treviranus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:594] + * tz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_707, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpus trapezoides [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:594, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus trapezoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezoid_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trapezoid body (Treviranus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:594 ] ## Cross-references @@ -20,9 +20,9 @@ * BM:TB * FMA:72487 * NIF_GrossAnatomy:birnlex_707 - * NeuroNames:594 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_707] + * NeuroNames:594 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_707 ] * SCTID:369019006 - * UMLS:C0152379 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_707] + * UMLS:C0152379 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_707 ] * Wikipedia:Trapezoid_body * http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003132.md b/md/UBERON/32/UBERON_0003132.md index eff5714902..36e815f27d 100644 --- a/md/UBERON/32/UBERON_0003132.md +++ b/md/UBERON/32/UBERON_0003132.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003132 * *Label* = arthropod hypopharynx - * *Definition* = A median tonguelike structure arising from the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.britannica.com/EBchecked/topic/279974/hypopharynx] + * *Definition* = A median tonguelike structure arising from the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.britannica.com/EBchecked/topic/279974/hypopharynx ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003232.md b/md/UBERON/32/UBERON_0003232.md index 5bb79626da..112cbee988 100644 --- a/md/UBERON/32/UBERON_0003232.md +++ b/md/UBERON/32/UBERON_0003232.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003232 * *Label* = epithelium of knee - * *Definition* = An epithelium that is part of a knee [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a knee [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * knee epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * knee epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * knee epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * knee epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003332.md b/md/UBERON/32/UBERON_0003332.md index b5bfdda3b1..ff1bc8e17f 100644 --- a/md/UBERON/32/UBERON_0003332.md +++ b/md/UBERON/32/UBERON_0003332.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003332 * *Label* = submucosa of duodenum - * *Definition* = A submucosa that is part of a duodenum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a duodenum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * doudenal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14943] - * duodenal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14943] - * duodenum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * doudenal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14943 ] + * duodenal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14943 ] + * duodenum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003432.md b/md/UBERON/32/UBERON_0003432.md index 5d62a98248..7268200364 100644 --- a/md/UBERON/32/UBERON_0003432.md +++ b/md/UBERON/32/UBERON_0003432.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003432 * *Label* = chest nerve - * *Definition* = A nerve that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior thoracic region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003532.md b/md/UBERON/32/UBERON_0003532.md index 4af2d4cfe2..c84c927cb2 100644 --- a/md/UBERON/32/UBERON_0003532.md +++ b/md/UBERON/32/UBERON_0003532.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003532 * *Label* = hindlimb skin - * *Definition* = A zone of skin that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check free limb vs pelvic complex ## Synonyms - * hind limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23102] - * skin of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23102] + * hind limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23102 ] + * skin of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23102 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:23102 * MA:0000665 * SCTID:181528008 - * UMLS:C0222268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Lower_Limb_and_Hip] + * UMLS:C0222268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Lower_Limb_and_Hip ] * ncithesaurus:Skin_of_the_Lower_Limb_and_Hip ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003632.md b/md/UBERON/32/UBERON_0003632.md index 37528e7f57..bdc3ce6449 100644 --- a/md/UBERON/32/UBERON_0003632.md +++ b/md/UBERON/32/UBERON_0003632.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003632 * *Label* = pedal digit 2 - * *Definition* = 2nd digit of the hind autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = 2nd digit of the hind autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * 2nd toe - * digit 2 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17463] - * digitus secundus [ii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25048] - * digitus secundus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002350[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000466] + * digit 2 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17463 ] + * digitus secundus [ii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25048 ] + * digitus secundus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002350, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000466 ] * hind digit 2 - * hind digit II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010645] - * hind limb digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind digit II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010645 ] + * hind limb digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit II - * second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25048] - * second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25048] - * toe 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002042] - * foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * digitus secundus (II) pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002350] + * second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25048 ] + * second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25048 ] + * toe 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002042 ] + * foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * digitus secundus (II) pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002350 ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:25048 * MA:0000466 * SCTID:362817008 - * UMLS:C1708081 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_2] + * UMLS:C1708081 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_2 ] * ncithesaurus:Foot_Digit_2 ## Subsets @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 2](../../UBERON/49/UBERON_0006049.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003832.md b/md/UBERON/32/UBERON_0003832.md index 04af6953f3..4d03b4c616 100644 --- a/md/UBERON/32/UBERON_0003832.md +++ b/md/UBERON/32/UBERON_0003832.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003832 * *Label* = esophagus muscle - * *Definition* = A muscle organ that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: merge muscle and muscle layer? ## Synonyms * esophageal muscle - * esophagus muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0003932.md b/md/UBERON/32/UBERON_0003932.md index a6922dc3f4..27af215f76 100644 --- a/md/UBERON/32/UBERON_0003932.md +++ b/md/UBERON/32/UBERON_0003932.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003932 * *Label* = cartilage element of chondrocranium - * *Definition* = A cartilage element of chondrocranium. Example: neurocranial trabecula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A cartilage element of chondrocranium. Example: neurocranial trabecula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cartilage of chondrocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * cartilaginous element of chondrocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * chondrocranium cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001461] - * neurocranium cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001461] + * cartilage of chondrocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * cartilaginous element of chondrocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * chondrocranium cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001461 ] + * neurocranium cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001461 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chondrocranium](../../UBERON/41/UBERON_0002241.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004032.md b/md/UBERON/32/UBERON_0004032.md index d02175e30b..c52e627848 100644 --- a/md/UBERON/32/UBERON_0004032.md +++ b/md/UBERON/32/UBERON_0004032.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004032 * *Label* = podocyte slit diaphragm - * *Definition* = the thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008060] + * *Definition* = the thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008060 ] * *Comment* = TODO - submit to GO ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004132.md b/md/UBERON/32/UBERON_0004132.md index 6af91a2516..4fd4825bda 100644 --- a/md/UBERON/32/UBERON_0004132.md +++ b/md/UBERON/32/UBERON_0004132.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004132 * *Label* = trigeminal sensory nucleus - * *Definition* = The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nuclei] + * *Definition* = The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nuclei ] * *Comment* = TODO: check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies ## Synonyms * sensory trigeminal V nucleus - * sensory trigeminal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000433[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sensory trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000433] - * trigeminal V sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001030] - * trigeminal sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021730] + * sensory trigeminal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000433, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sensory trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000433 ] + * trigeminal V sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001030 ] + * trigeminal sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021730 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004232.md b/md/UBERON/32/UBERON_0004232.md index 298f4fcab6..58c24eba13 100644 --- a/md/UBERON/32/UBERON_0004232.md +++ b/md/UBERON/32/UBERON_0004232.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004232 * *Label* = lymphatic vessel smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a lymphatic vessel [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0000751 - * UMLS:C1708791 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue] + * UMLS:C1708791 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue ] * ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue ## Subsets @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004332.md b/md/UBERON/32/UBERON_0004332.md index 424531422b..f84fb927cf 100644 --- a/md/UBERON/32/UBERON_0004332.md +++ b/md/UBERON/32/UBERON_0004332.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004332 * *Label* = proximal phalanx of pedal digit 1 - * *Definition* = A proximal phalanx that is part of a pedal digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot digit 1 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hallux proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43252] - * proximal phalanx of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43252] - * proximal phalanx of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foot digit 1 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hallux proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43252 ] + * proximal phalanx of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43252 ] + * proximal phalanx of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * proximal phalanx of the 1st toe ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004432.md b/md/UBERON/32/UBERON_0004432.md index 78845e0fd0..31d9609018 100644 --- a/md/UBERON/32/UBERON_0004432.md +++ b/md/UBERON/32/UBERON_0004432.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004432 * *Label* = proximal epiphysis of distal phalanx of manual digit 2 - * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37505] - * base of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37505] - * base of distal phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37505] - * base of distal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37505] - * proximal epiphysis of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37505[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37505 ] + * base of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37505 ] + * base of distal phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37505 ] + * base of distal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37505 ] + * proximal epiphysis of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37505, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 2](../../UBERON/11/UBERON_0004311.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004532.md b/md/UBERON/32/UBERON_0004532.md index 5af12ea14d..12a6feec5d 100644 --- a/md/UBERON/32/UBERON_0004532.md +++ b/md/UBERON/32/UBERON_0004532.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004532 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/32/UBERON_0004632.md b/md/UBERON/32/UBERON_0004632.md index faa1e89125..b6c0abd28b 100644 --- a/md/UBERON/32/UBERON_0004632.md +++ b/md/UBERON/32/UBERON_0004632.md @@ -7,9 +7,9 @@ ## Synonyms - * Seventh dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9968] - * T7 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9968] - * seventh thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9968] + * Seventh dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9968 ] + * T7 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9968 ] + * seventh thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9968 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9968 * MA:0001444 * SCTID:181835006 - * UMLS:C0459947 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T7_Vertebra] + * UMLS:C0459947 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T7_Vertebra ] * ncithesaurus:T7_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004732.md b/md/UBERON/32/UBERON_0004732.md index 9621345749..abb24b6a69 100644 --- a/md/UBERON/32/UBERON_0004732.md +++ b/md/UBERON/32/UBERON_0004732.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004732 * *Label* = segmental subdivision of nervous system - * *Definition* = Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005140[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005140, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Editor note: revisit this after CARO is revised and/or we have defined metameric segment ## Synonyms - * neuromere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005140] + * neuromere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005140 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ segment](../../UBERON/63/UBERON_0000063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004832.md b/md/UBERON/32/UBERON_0004832.md index 00e47c76c7..9209f9a16c 100644 --- a/md/UBERON/32/UBERON_0004832.md +++ b/md/UBERON/32/UBERON_0004832.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004832 * *Label* = anal region skeletal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of an anal region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of an anal region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anal part of perineum skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal part of perineum skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal triangle skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of anal part of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anal part of perineum skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal part of perineum skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal triangle skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of anal part of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0004932.md b/md/UBERON/32/UBERON_0004932.md index f356bbd655..41fce89eed 100644 --- a/md/UBERON/32/UBERON_0004932.md +++ b/md/UBERON/32/UBERON_0004932.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004932 * *Label* = submucosa of sigmoid colon - * *Definition* = A submucosa that is part of a sigmoid colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a sigmoid colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sigmoid colon submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * sigmoid colon submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sigmoid colon](../../UBERON/59/UBERON_0001159.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005032.md b/md/UBERON/32/UBERON_0005032.md index f7a09b8a22..3f401ea697 100644 --- a/md/UBERON/32/UBERON_0005032.md +++ b/md/UBERON/32/UBERON_0005032.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005032 * *Label* = mucosa of lower lip - * *Definition* = A mucosa that is part of a lower lip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a lower lip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lower lip mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower lip mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower lip mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower lip organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of lower lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of lower lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of lower lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lower lip mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower lip mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower lip mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower lip organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of lower lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of lower lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of lower lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:59833 * SCTID:362089001 - * UMLS:C0226939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mucosa_of_the_Lower_Lip] + * UMLS:C0226939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mucosa_of_the_Lower_Lip ] * ncithesaurus:Mucosa_of_the_Lower_Lip ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lip](../../UBERON/35/UBERON_0001835.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005132.md b/md/UBERON/32/UBERON_0005132.md index 2d8b6c3bb2..a85d846645 100644 --- a/md/UBERON/32/UBERON_0005132.md +++ b/md/UBERON/32/UBERON_0005132.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005132 * *Label* = metanephric long nephron - * *Definition* = Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072238] + * *Definition* = Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072238 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long nephron](../../UBERON/94/UBERON_0004194.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005332.md b/md/UBERON/32/UBERON_0005332.md index 87ff39c720..bad0dd73d6 100644 --- a/md/UBERON/32/UBERON_0005332.md +++ b/md/UBERON/32/UBERON_0005332.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005332 * *Label* = mesonephric S-shaped body - * *Definition* = The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061244] + * *Definition* = The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061244 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [S-shaped body](../../UBERON/99/UBERON_0004199.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005432.md b/md/UBERON/32/UBERON_0005432.md index 6d6a1502ca..7365f30089 100644 --- a/md/UBERON/32/UBERON_0005432.md +++ b/md/UBERON/32/UBERON_0005432.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005432 * *Label* = aortic sac - * *Definition* = the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/aortic+sac] + * *Definition* = The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012510 ] ## Synonyms @@ -37,8 +37,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005432 + * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]. + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005732.md b/md/UBERON/32/UBERON_0005732.md index 4cd019d3b8..8fd29dbc9b 100644 --- a/md/UBERON/32/UBERON_0005732.md +++ b/md/UBERON/32/UBERON_0005732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005732 * *Label* = paired limb/fin field - * *Definition* = A ring of cells capable of forming a limb or paired fin[Gilbert,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * *Definition* = A ring of cells capable of forming a limb or paired fin[Gilbert,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] * *Comment* = Editor notes: we represent the field as being a part of the LPM (consistent with ZFA, Gilbert). As a consequence, the relationship between limb bud (with is ectoderm+mesenchyme) stands in a weaker has_developmental_contribution_from relation to the field - TODO implement this. ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [paired limb/fin bud](../../UBERON/57/UBERON_0004357.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005832.md b/md/UBERON/32/UBERON_0005832.md index 5f2a17656e..7179b4140e 100644 --- a/md/UBERON/32/UBERON_0005832.md +++ b/md/UBERON/32/UBERON_0005832.md @@ -7,13 +7,13 @@ ## Synonyms - * cuneatus tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021959] - * Cuneate fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cuf] - * cuneate column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_fasciculus] - * cuneate fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cuf] - * cuneate tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_fasciculus] - * fasciculus cuneatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_fasciculus] - * fasciculus cuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_fasciculus] + * cuneatus tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021959 ] + * Cuneate fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cuf ] + * cuneate column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_fasciculus ] + * cuneate fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cuf ] + * cuneate tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_fasciculus ] + * fasciculus cuneatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_fasciculus ] + * fasciculus cuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_fasciculus ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004169 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0005932.md b/md/UBERON/32/UBERON_0005932.md index b18398e55a..810a73d70a 100644 --- a/md/UBERON/32/UBERON_0005932.md +++ b/md/UBERON/32/UBERON_0005932.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005932 * *Label* = bulb of hair follicle - * *Definition* = The lower segment of the hair that circles the dermal papilla and the hair matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Hair_Bulb] + * *Definition* = The lower segment of the hair that circles the dermal papilla and the hair matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Hair_Bulb ] * *Comment* = see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 ## Synonyms - * hair bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70666] - * hair follicle bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70666] - * coat hair bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000161[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hair bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70666 ] + * hair follicle bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70666 ] + * coat hair bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000161, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:70666 * MA:0000161 * SCTID:361360009 - * UMLS:C0221962 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair_Bulb] + * UMLS:C0221962 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair_Bulb ] * ncithesaurus:Hair_Bulb ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006032.md b/md/UBERON/32/UBERON_0006032.md index 6e5e8f86cd..1e793db599 100644 --- a/md/UBERON/32/UBERON_0006032.md +++ b/md/UBERON/32/UBERON_0006032.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006032 * *Label* = interdigital region between manual digits 3 and 4 - * *Definition* = An interdigital region that adjacent_to a manual digit 3 and adjacent_to a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a manual digit 3 and adjacent_to a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006232.md b/md/UBERON/32/UBERON_0006232.md index 99b3f5dace..3bf5bf8829 100644 --- a/md/UBERON/32/UBERON_0006232.md +++ b/md/UBERON/32/UBERON_0006232.md @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006332.md b/md/UBERON/32/UBERON_0006332.md index 11d2859720..7e34f7c1d9 100644 --- a/md/UBERON/32/UBERON_0006332.md +++ b/md/UBERON/32/UBERON_0006332.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006332 * *Label* = nasal capsule - * *Definition* = an embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21270050] + * *Definition* = an embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21270050 ] * *Comment* = Taxon notes: In most mammals, the nasal capsule remains unossified, except in mammals where the ethmoid portion ossifies to form the turbinates[Kardong]. In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae. Editor's note - consider splitting this class. Developing cartilage in mammals? Connective tissue sheath in TAO. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]. Cartilaginous envelope containing the nasal organ[FishBase] Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium[ZFA]. Avian def: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak ## Synonyms @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure that is the connective tissue sheath that surrounds, except for external opening(s) in adult, the olfactory epithelium.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium.[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Development information from Brian Hall, Bones and Cartilage: Developmental Skeletal Biology.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006532.md b/md/UBERON/32/UBERON_0006532.md index 7e8528613c..2d60360299 100644 --- a/md/UBERON/32/UBERON_0006532.md +++ b/md/UBERON/32/UBERON_0006532.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006632.md b/md/UBERON/32/UBERON_0006632.md index 77b973365b..cd79d5c7c4 100644 --- a/md/UBERON/32/UBERON_0006632.md +++ b/md/UBERON/32/UBERON_0006632.md @@ -6,7 +6,7 @@ ## Synonyms - * musculophrenic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10645] + * musculophrenic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10645 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006832.md b/md/UBERON/32/UBERON_0006832.md index 8a5b762ad7..f5b06138e5 100644 --- a/md/UBERON/32/UBERON_0006832.md +++ b/md/UBERON/32/UBERON_0006832.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006832 * *Label* = lumen of open tracheal system trachea - * *Definition* = An anatomical space that surrounded_by a open tracheal system trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a open tracheal system trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tracheal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00007410[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * tracheal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00007410, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [open tracheal system trachea](../../UBERON/27/UBERON_0003127.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0006932.md b/md/UBERON/32/UBERON_0006932.md index b9d7d82da4..66643837d0 100644 --- a/md/UBERON/32/UBERON_0006932.md +++ b/md/UBERON/32/UBERON_0006932.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006932 * *Label* = vestibular epithelium - * *Definition* = An epithelium that is part of a vestibular labyrinth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a vestibular labyrinth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of vestibular labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner ear vestibular component epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000834] - * vestibular sensory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75606] + * epithelium of vestibular labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner ear vestibular component epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000834 ] + * vestibular sensory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75606 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular labyrinth](../../UBERON/62/UBERON_0001862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007132.md b/md/UBERON/32/UBERON_0007132.md index fe90143b60..0bfa6b60b9 100644 --- a/md/UBERON/32/UBERON_0007132.md +++ b/md/UBERON/32/UBERON_0007132.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007132 * *Label* = head kidney - * *Definition* = The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-040923-1[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.00427] + * *Definition* = The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-040923-1, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.00427 ] * *Comment* = in GO, head kidney isa pronephros. Modified the ZFA relationships - the HK is derived from the anterior part of the pronephros and persists until adulthood ## Synonyms - * anterior kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000669] - * kidney marrow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000669] + * anterior kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000669 ] + * kidney marrow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000669 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007232.md b/md/UBERON/32/UBERON_0007232.md index 59ad767f1f..11060d683f 100644 --- a/md/UBERON/32/UBERON_0007232.md +++ b/md/UBERON/32/UBERON_0007232.md @@ -6,8 +6,8 @@ ## Synonyms - * two-cell stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * NF stage 2 (2-cell) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:1000011[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * two-cell stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * NF stage 2 (2-cell) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:1000011, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007332.md b/md/UBERON/32/UBERON_0007332.md index 297361e6ba..23d49bc4df 100644 --- a/md/UBERON/32/UBERON_0007332.md +++ b/md/UBERON/32/UBERON_0007332.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007332 * *Label* = mandibular rhamphotheca - * *Definition* = A rhamphotheca that is part of a lower beak. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhamphotheca that is part of a lower beak. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gnathotheca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Beak#Rhamphotheca] + * gnathotheca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Beak#Rhamphotheca ] * mandibular beak ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower beak](../../UBERON/13/UBERON_0010013.md) and [rhamphotheca](../../UBERON/30/UBERON_0007330.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007632.md b/md/UBERON/32/UBERON_0007632.md index d54e15cf26..b179ba0ab5 100644 --- a/md/UBERON/32/UBERON_0007632.md +++ b/md/UBERON/32/UBERON_0007632.md @@ -6,8 +6,8 @@ ## Synonyms - * Barrington nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:B] - * basal nucleus (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:B] + * Barrington nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:B ] + * basal nucleus (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:B ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007732.md b/md/UBERON/32/UBERON_0007732.md index 307bd3332b..ee753e55a6 100644 --- a/md/UBERON/32/UBERON_0007732.md +++ b/md/UBERON/32/UBERON_0007732.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007732 * *Label* = interphalangeal joint of manual digit 5 - * *Definition* = An interphalangeal joint of manus that is part of a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interphalangeal joint of manus that is part of a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interphalangeal joint of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35407] - * interphalangeal joint of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35407] - * interphalangeal joint of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35407[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * interphalangeal joint of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35407 ] + * interphalangeal joint of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35407 ] + * interphalangeal joint of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35407, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interphalangeal joint of manus](../../UBERON/22/UBERON_0007722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0007832.md b/md/UBERON/32/UBERON_0007832.md index 9b1df2b49d..44dd979bc5 100644 --- a/md/UBERON/32/UBERON_0007832.md +++ b/md/UBERON/32/UBERON_0007832.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007832 * *Label* = pelvic girdle skeleton - * *Definition* = Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000155[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvis] + * *Definition* = Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000155, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvis ] * *Comment* = AO notes: Note that the VSAO and many ontologies use the label 'pelvic girdle' to denote the skeletal region specifically. We place the EHDAA2 class here, note that this includes the pre-cartilage condensation as parts. Editor notes: need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VSAO) ## Synonyms - * pelvic girdle skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000155] - * skeletal parts of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * skeleton of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000155[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pelvic girdle skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000155 ] + * skeletal parts of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * skeleton of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000155, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) and [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Girdle skeleton consisting of a set of bones linking the axial series to the hindlimb/fin skeleton and offering anchoring areas for hindlimb/fin and caudal musculature.[VSAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0008332.md b/md/UBERON/32/UBERON_0008332.md index 3a5be87fbe..6ba0b702f5 100644 --- a/md/UBERON/32/UBERON_0008332.md +++ b/md/UBERON/32/UBERON_0008332.md @@ -6,7 +6,7 @@ ## Synonyms - * neuraxis hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83871] + * neuraxis hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83871 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0008432.md b/md/UBERON/32/UBERON_0008432.md index 2f7e6495be..011324f00e 100644 --- a/md/UBERON/32/UBERON_0008432.md +++ b/md/UBERON/32/UBERON_0008432.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008432 * *Label* = thoracic vertebral foramen - * *Definition* = A vertebral foramen that is part of a thoracic vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vertebral foramen that is part of a thoracic vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) and [vertebral foramen](../../UBERON/31/UBERON_0001131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008432 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0008832.md b/md/UBERON/32/UBERON_0008832.md index 05fe52a617..2bb21ce83c 100644 --- a/md/UBERON/32/UBERON_0008832.md +++ b/md/UBERON/32/UBERON_0008832.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008832 * *Label* = outer spiral sulcus - * *Definition* = a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/outer-spiral-sulcus.html] + * *Definition* = a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/outer-spiral-sulcus.html ] * *Comment* = part_of spiral sulcus in MA ## Synonyms - * external spiral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001196] - * sulcus spiralis externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/outer-spiral-sulcus.html] + * external spiral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001196 ] + * sulcus spiralis externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/outer-spiral-sulcus.html ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008832 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0009032.md b/md/UBERON/32/UBERON_0009032.md index 4bb3d5bd29..5496ce5125 100644 --- a/md/UBERON/32/UBERON_0009032.md +++ b/md/UBERON/32/UBERON_0009032.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009032 * *Label* = right pulmonary vein - * *Definition* = Vein that drains right lung and returns blood to the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Vein that drains right lung and returns blood to the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -12,7 +12,7 @@ * MA:0002208 * SCTID:304056008 - * UMLS:C0226669 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Pulmonary_Vein] + * UMLS:C0226669 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Pulmonary_Vein ] * ncithesaurus:Right_Pulmonary_Vein ## Subsets @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [pulmonary vein](../../UBERON/16/UBERON_0002016.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vein that returns oxygenated blood from the right lung to the left atrium of the heart[ncithesaurus:Right_Pulmonary_Vein]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0009132.md b/md/UBERON/32/UBERON_0009132.md index 6b5203f77f..b0129c94d6 100644 --- a/md/UBERON/32/UBERON_0009132.md +++ b/md/UBERON/32/UBERON_0009132.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009132 * *Label* = peroneus - * *Definition* = a group of three muscles fibularis (peronus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibularis_muscles] + * *Definition* = a group of three muscles fibularis (peronus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibularis_muscles ] ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0009632.md b/md/UBERON/32/UBERON_0009632.md index 116c2a7958..60ea9396fc 100644 --- a/md/UBERON/32/UBERON_0009632.md +++ b/md/UBERON/32/UBERON_0009632.md @@ -6,17 +6,17 @@ ## Synonyms - * cervical neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16422] - * cervical spinal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16422] - * nerve root part of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF:NIF] - * root of cervical spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16422] + * cervical neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16422 ] + * cervical spinal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16422 ] + * nerve root part of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF:NIF ] + * root of cervical spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16422 ] ## Cross-references * FMA:16422 * NIF_GrossAnatomy:birnlex_955 * SCTID:180966009 - * UMLS:C0581631 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Spinal_Nerve_Root] + * UMLS:C0581631 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Spinal_Nerve_Root ] * ncithesaurus:Cervical_Spinal_Nerve_Root ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0009732.md b/md/UBERON/32/UBERON_0009732.md index fbacc54b34..6d7fc66d4d 100644 --- a/md/UBERON/32/UBERON_0009732.md +++ b/md/UBERON/32/UBERON_0009732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009732 * *Label* = sublaminar layers S1 or S2 or S5 - * *Definition* = One of sublaminar layers S1, S2, or S5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S1, S2, or S5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md)or[sublaminar layer S2](../../UBERON/23/UBERON_0008923.md)or[sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010032.md b/md/UBERON/32/UBERON_0010032.md index 1eab5bdc0c..0531a2f723 100644 --- a/md/UBERON/32/UBERON_0010032.md +++ b/md/UBERON/32/UBERON_0010032.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010032 * *Label* = anterior part of tongue - * *Definition* = The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] + * *Definition* = The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] * *Comment* = AO notes: check NCIT. Development notes: The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue ## Synonyms - * anterior 2/3 of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * anterior 2/3 of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * anterior two thirds of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * apex linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * apex of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * buccal part of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * front of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * oral part of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue] - * pars anterior dorsi linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior 2/3 of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * anterior 2/3 of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * anterior two thirds of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * apex linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * apex of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * buccal part of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * front of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * oral part of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue ] + * pars anterior dorsi linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:229084 - * UMLS:C0226946 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Apex_of_the_Tongue] + * UMLS:C0226946 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Apex_of_the_Tongue ] * Wikipedia:Anterior_tongue * http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg * ncithesaurus:Apex_of_the_Tongue @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [lingual swellings](../../UBERON/60/UBERON_0006260.md) and [organ part](../../UBERON/64/UBERON_0000064.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010132.md b/md/UBERON/32/UBERON_0010132.md index 4789eb189a..32f6818107 100644 --- a/md/UBERON/32/UBERON_0010132.md +++ b/md/UBERON/32/UBERON_0010132.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010132 * *Label* = gastroduodenal artery - * *Definition* = a small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastroduodenal_artery] + * *Definition* = a small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastroduodenal_artery ] ## Synonyms - * arteria gastroduodenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastroduodenal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria gastroduodenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastroduodenal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010232.md b/md/UBERON/32/UBERON_0010232.md index 0baacb6911..180d2d4983 100644 --- a/md/UBERON/32/UBERON_0010232.md +++ b/md/UBERON/32/UBERON_0010232.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010332.md b/md/UBERON/32/UBERON_0010332.md index 893012f09e..6863da11f7 100644 --- a/md/UBERON/32/UBERON_0010332.md +++ b/md/UBERON/32/UBERON_0010332.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010332 * *Label* = epithelium of handplate - * *Definition* = An epithelium that is part of a handplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a handplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * handplate epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000730] + * handplate epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000730 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [handplate](../../UBERON/75/UBERON_0006875.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010532.md b/md/UBERON/32/UBERON_0010532.md index c58ec65921..6bdd50b919 100644 --- a/md/UBERON/32/UBERON_0010532.md +++ b/md/UBERON/32/UBERON_0010532.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010732.md b/md/UBERON/32/UBERON_0010732.md index 1868d19ca9..7ec34e4f44 100644 --- a/md/UBERON/32/UBERON_0010732.md +++ b/md/UBERON/32/UBERON_0010732.md @@ -6,7 +6,7 @@ ## Synonyms - * sphenoid greater wing pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003448] + * sphenoid greater wing pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003448 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alisphenoid endochondral element](../../UBERON/58/UBERON_0015058.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0010932.md b/md/UBERON/32/UBERON_0010932.md index fcdd81d8b6..907ebbfae6 100644 --- a/md/UBERON/32/UBERON_0010932.md +++ b/md/UBERON/32/UBERON_0010932.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010932 * *Label* = crico-arytenoid muscle - * *Definition* = Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_muscle] + * *Definition* = Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_muscle ] ## Synonyms - * crico-arytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_muscle] - * cricoarytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_muscle] - * cricoarytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_muscle] + * crico-arytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_muscle ] + * cricoarytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_muscle ] + * cricoarytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_muscle ] * cricoarytenoideus ## Cross-references * MA:0002283 * SCTID:244811003 - * UMLS:C0448336 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricoarytenoid_Muscle] + * UMLS:C0448336 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricoarytenoid_Muscle ] * Wikipedia:Cricoarytenoid_muscle * http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png * ncithesaurus:Cricoarytenoid_Muscle @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0011132.md b/md/UBERON/32/UBERON_0011132.md index 272c1af8e6..0249cc3d6a 100644 --- a/md/UBERON/32/UBERON_0011132.md +++ b/md/UBERON/32/UBERON_0011132.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011132 * *Label* = intercarpal joint - * *Definition* = The intercarpal articulations (articulations of the carpus) can be subdivided into three sets of articulations: Those of the proximal row of carpal bones, those of the distal row of carpal bones, and those of the two rows with each other. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercarpal_articulations] + * *Definition* = The intercarpal articulations (articulations of the carpus) can be subdivided into three sets of articulations: Those of the proximal row of carpal bones, those of the distal row of carpal bones, and those of the two rows with each other. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercarpal_articulations ] ## Synonyms - * carpal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35292] - * intercarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercarpal_articulations] - * intercarpal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercarpal_articulations] - * midcarpal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercarpal_articulations] + * carpal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35292 ] + * intercarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercarpal_articulations ] + * intercarpal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercarpal_articulations ] + * midcarpal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercarpal_articulations ] ## Cross-references * FMA:35292 * SCTID:182176003 - * UMLS:C1262468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carpal_Joint] + * UMLS:C1262468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carpal_Joint ] * Wikipedia:Intercarpal_articulations * http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png * ncithesaurus:Carpal_Joint @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0011332.md b/md/UBERON/32/UBERON_0011332.md index e4fe4557b5..91cf4570b7 100644 --- a/md/UBERON/32/UBERON_0011332.md +++ b/md/UBERON/32/UBERON_0011332.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0011532.md b/md/UBERON/32/UBERON_0011532.md index b80a3f0a15..9776f2d2b9 100644 --- a/md/UBERON/32/UBERON_0011532.md +++ b/md/UBERON/32/UBERON_0011532.md @@ -7,7 +7,7 @@ ## Synonyms - * pubovaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19090] + * pubovaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19090 ] * pubovaginalis muscle ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [pubococcygeus muscle](../../UBERON/28/UBERON_0011528.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0011932.md b/md/UBERON/32/UBERON_0011932.md index c1f8484194..73c46aaba2 100644 --- a/md/UBERON/32/UBERON_0011932.md +++ b/md/UBERON/32/UBERON_0011932.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011932 * *Label* = pilosebaceous unit - * *Definition* = An epidermal invagination that has as parts a hair follicle, a sebaceous gland, and arrector pili muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMC:PMC3130146[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pilosebaceous_unit] + * *Definition* = An epidermal invagination that has as parts a hair follicle, a sebaceous gland, and arrector pili muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMC:PMC3130146, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pilosebaceous_unit ] ## Synonyms - * fabrica pilosebacea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pilosebaceous_unit] - * pilo-sebaceous apparatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70661] + * fabrica pilosebacea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pilosebaceous_unit ] + * pilo-sebaceous apparatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70661 ] * pilo-sebaceous unit * pilosebaceous apparatus @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0012132.md b/md/UBERON/32/UBERON_0012132.md index f6874e9b09..d69f5b73c6 100644 --- a/md/UBERON/32/UBERON_0012132.md +++ b/md/UBERON/32/UBERON_0012132.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012132 * *Label* = intercuneiform joint - * *Definition* = The intercuneiform articulations are articulations among the cuneiform bones[WP,unverified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] + * *Definition* = The intercuneiform articulations are articulations among the cuneiform bones[WP,unverified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] * *Comment* = Terminology notes: The term 'cuneocuboid articulation' is sometimes used to describe the joint between the cuboid and lateral cuneiform, but this term isn't recognized by Terminologia Anatomica[WP] ## Synonyms - * cuneocuboid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] - * cuneocuboid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] - * intercuneiform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] - * intercuneiform and cuneocuboid articulations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] - * intercuneiform articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] - * intercuneiform joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercuneiform_articulations] + * cuneocuboid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] + * cuneocuboid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] + * intercuneiform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] + * intercuneiform and cuneocuboid articulations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] + * intercuneiform articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] + * intercuneiform joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercuneiform_articulations ] ## Cross-references @@ -33,11 +33,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0012332.md b/md/UBERON/32/UBERON_0012332.md index 9365dfd008..d2189b87ec 100644 --- a/md/UBERON/32/UBERON_0012332.md +++ b/md/UBERON/32/UBERON_0012332.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012332 * *Label* = broad ligament of uterus - * *Definition* = A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis[MESH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.513.170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Broad_ligament_of_the_uterus] + * *Definition* = A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis[MESH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.513.170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Broad_ligament_of_the_uterus ] ## Synonyms - * broad uterine ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16516] - * broad ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.513.170] + * broad uterine ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16516 ] + * broad ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.513.170 ] ## Cross-references * FMA:16516 * MESH:A02.513.170 * SCTID:362723009 - * UMLS:C0006205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Broad_Ligament] + * UMLS:C0006205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Broad_Ligament ] * Wikipedia:Broad_ligament_of_the_uterus * ncithesaurus:Broad_Ligament @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012332 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0013132.md b/md/UBERON/32/UBERON_0013132.md index 1a474ac7b4..d35177105f 100644 --- a/md/UBERON/32/UBERON_0013132.md +++ b/md/UBERON/32/UBERON_0013132.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013132 * *Label* = penicillar arteriole - * *Definition* = One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/penicillus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/penicillus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * penicilli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/penicilli[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * penicillus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16038] + * penicilli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/penicilli, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * penicillus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16038 ] * penicillar artery ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013132 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0013232.md b/md/UBERON/32/UBERON_0013232.md index 16dea1df4d..a473ef53b8 100644 --- a/md/UBERON/32/UBERON_0013232.md +++ b/md/UBERON/32/UBERON_0013232.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013232 * *Label* = serous acinus - * *Definition* = The secretory unit of a serous gland. The acinar portion is composed of serous secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm] + * *Definition* = The secretory unit of a serous gland. The acinar portion is composed of serous secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [serous gland](../../UBERON/09/UBERON_0000409.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013232 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0013632.md b/md/UBERON/32/UBERON_0013632.md index 3401e74cc0..c0c229d5e9 100644 --- a/md/UBERON/32/UBERON_0013632.md +++ b/md/UBERON/32/UBERON_0013632.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [sesamoid element](../../UBERON/31/UBERON_0013631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0013732.md b/md/UBERON/32/UBERON_0013732.md index 5fefa7062d..499700966c 100644 --- a/md/UBERON/32/UBERON_0013732.md +++ b/md/UBERON/32/UBERON_0013732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013732 * *Label* = vestibule of nasal cavity - * *Definition* = A tube leading from the external naris to the nasal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000984[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A tube leading from the external naris to the nasal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000984, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0014532.md b/md/UBERON/32/UBERON_0014532.md index bfbaa14359..7380aaf578 100644 --- a/md/UBERON/32/UBERON_0014532.md +++ b/md/UBERON/32/UBERON_0014532.md @@ -6,7 +6,7 @@ ## Synonyms - * cerebral hemisphere lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67951] + * cerebral hemisphere lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67951 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina of neuraxis](../../UBERON/30/UBERON_0014530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014532 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0014632.md b/md/UBERON/32/UBERON_0014632.md index afc8958b07..f484e51d2c 100644 --- a/md/UBERON/32/UBERON_0014632.md +++ b/md/UBERON/32/UBERON_0014632.md @@ -6,14 +6,14 @@ ## Synonyms - * apex of lumbar spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_811[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * apex of lumbar spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_811] + * apex of lumbar spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_811, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * apex of lumbar spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_811 ] ## Cross-references * NIF_GrossAnatomy:birnlex_811 * SCTID:314425003 - * UMLS:C0228647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_811] + * UMLS:C0228647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_811 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014632 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0014732.md b/md/UBERON/32/UBERON_0014732.md index 12b7052450..a290e6cb00 100644 --- a/md/UBERON/32/UBERON_0014732.md +++ b/md/UBERON/32/UBERON_0014732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014732 * *Label* = compound cell cluster organ - * *Definition* = An anatomical structure consisting of multiple cell cluster organs, that has a largely bona-fide boundary and that does not contain portions of tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0010002] + * *Definition* = An anatomical structure consisting of multiple cell cluster organs, that has a largely bona-fide boundary and that does not contain portions of tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0010002 ] * *Comment* = Examples: compound eye; Johnston's organ. ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014732 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0014932.md b/md/UBERON/32/UBERON_0014932.md index 3f287d4978..0ac01614be 100644 --- a/md/UBERON/32/UBERON_0014932.md +++ b/md/UBERON/32/UBERON_0014932.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014932 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_0015032.md b/md/UBERON/32/UBERON_0015032.md index e9fef50c81..90b02e900c 100644 --- a/md/UBERON/32/UBERON_0015032.md +++ b/md/UBERON/32/UBERON_0015032.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015032 * *Label* = pedal digit 2 phalanx endochondral element - * *Definition* = A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 2 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 2 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 2 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 2 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit 2 phalanx cartilage element](../../UBERON/81/UBERON_0010681.md)or[pedal digit 2 phalanx pre-cartilage condensation](../../UBERON/81/UBERON_0010581.md)or[pedal digit 2 phalanx](../../UBERON/41/UBERON_0003641.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015032 + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2000232.md b/md/UBERON/32/UBERON_2000232.md index a787a96b1a..800469f17f 100644 --- a/md/UBERON/32/UBERON_2000232.md +++ b/md/UBERON/32/UBERON_2000232.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral semicircular canal primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000232[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * lateral semicircular canal primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000232, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2000532.md b/md/UBERON/32/UBERON_2000532.md index bff22dc859..adc8848cb7 100644 --- a/md/UBERON/32/UBERON_2000532.md +++ b/md/UBERON/32/UBERON_2000532.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2000732.md b/md/UBERON/32/UBERON_2000732.md index d506e30145..8bc1b41428 100644 --- a/md/UBERON/32/UBERON_2000732.md +++ b/md/UBERON/32/UBERON_2000732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000732 * *Label* = somite 3 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 3 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2000832.md b/md/UBERON/32/UBERON_2000832.md index fcdb2f8606..5bab1fd4fc 100644 --- a/md/UBERON/32/UBERON_2000832.md +++ b/md/UBERON/32/UBERON_2000832.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000832 * *Label* = sclerotome somite 2 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2000932.md b/md/UBERON/32/UBERON_2000932.md index b30a70ae28..9c3f021521 100644 --- a/md/UBERON/32/UBERON_2000932.md +++ b/md/UBERON/32/UBERON_2000932.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000932 * *Label* = myotome somite 3 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001232.md b/md/UBERON/32/UBERON_2001232.md index b9182486d0..671760c26e 100644 --- a/md/UBERON/32/UBERON_2001232.md +++ b/md/UBERON/32/UBERON_2001232.md @@ -6,9 +6,9 @@ ## Synonyms - * branchial arch 3 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001232] - * gill arch 3 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001232] - * visceral arch 5 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001232] + * branchial arch 3 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001232 ] + * gill arch 3 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001232 ] + * visceral arch 5 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001232 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001432.md b/md/UBERON/32/UBERON_2001432.md index 0aebb4dcc5..336c81ad26 100644 --- a/md/UBERON/32/UBERON_2001432.md +++ b/md/UBERON/32/UBERON_2001432.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001432 * *Label* = anterior sclerotic bone - * *Definition* = Sclerotic bone that is located anterior to the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sclerotic bone that is located anterior to the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001532.md b/md/UBERON/32/UBERON_2001532.md index 3bfa18d370..541420180f 100644 --- a/md/UBERON/32/UBERON_2001532.md +++ b/md/UBERON/32/UBERON_2001532.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001532 * *Label* = sublingual dorsal cartilage - * *Definition* = Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001632.md b/md/UBERON/32/UBERON_2001632.md index 57abe9c13c..6b36ab31ac 100644 --- a/md/UBERON/32/UBERON_2001632.md +++ b/md/UBERON/32/UBERON_2001632.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001632 * *Label* = ectopterygoid tooth - * *Definition* = Tooth that is attached to the ectopterygoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the ectopterygoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [ectopterygoid bone](../../UBERON/34/UBERON_0011634.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001732.md b/md/UBERON/32/UBERON_2001732.md index 0ec765f058..a12fa53311 100644 --- a/md/UBERON/32/UBERON_2001732.md +++ b/md/UBERON/32/UBERON_2001732.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001732 * *Label* = vertebral element 5 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 5 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001832.md b/md/UBERON/32/UBERON_2001832.md index be8b245afe..1e0b5eb5e2 100644 --- a/md/UBERON/32/UBERON_2001832.md +++ b/md/UBERON/32/UBERON_2001832.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001832 * *Label* = parasphenoid-basioccipital joint - * *Definition* = Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [basioccipital bone](../../UBERON/92/UBERON_0001692.md) and [core#connects](../../ts/core#connects.md) some [parasphenoid](../../UBERON/45/UBERON_0004745.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2001932.md b/md/UBERON/32/UBERON_2001932.md index 626fc6130e..fc08f146d1 100644 --- a/md/UBERON/32/UBERON_2001932.md +++ b/md/UBERON/32/UBERON_2001932.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001932 * *Label* = sensory canal tubular ossicle - * *Definition* = Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2002032.md b/md/UBERON/32/UBERON_2002032.md index 8782260705..c561d78bcf 100644 --- a/md/UBERON/32/UBERON_2002032.md +++ b/md/UBERON/32/UBERON_2002032.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002032 * *Label* = lateral ethmoid-frontal joint - * *Definition* = Joint that articulates the lateral ethmoid and frontal. lateral ethmoid-frontal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the lateral ethmoid and frontal. lateral ethmoid-frontal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [actinopterygian frontal bone](../../UBERON/66/UBERON_0004866.md) and [core#connects](../../ts/core#connects.md) some [lateral ethmoid](../../UBERON/26/UBERON_2000226.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2002132.md b/md/UBERON/32/UBERON_2002132.md index 8a5f0c7a9e..2a3ffc0e52 100644 --- a/md/UBERON/32/UBERON_2002132.md +++ b/md/UBERON/32/UBERON_2002132.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2002232.md b/md/UBERON/32/UBERON_2002232.md index 4d32eef76e..758df8dc79 100644 --- a/md/UBERON/32/UBERON_2002232.md +++ b/md/UBERON/32/UBERON_2002232.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2005032.md b/md/UBERON/32/UBERON_2005032.md index df5fb243dc..11489955c7 100644 --- a/md/UBERON/32/UBERON_2005032.md +++ b/md/UBERON/32/UBERON_2005032.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005032 * *Label* = optic vein - * *Definition* = Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * OV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005032] + * OV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005032 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_2005232.md b/md/UBERON/32/UBERON_2005232.md index 93d3552f05..deac347720 100644 --- a/md/UBERON/32/UBERON_2005232.md +++ b/md/UBERON/32/UBERON_2005232.md @@ -7,7 +7,7 @@ ## Synonyms - * multipolar commissural descending interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005232] + * multipolar commissural descending interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005232 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/32/UBERON_2007032.md b/md/UBERON/32/UBERON_2007032.md index c4273f3b15..11a51188ff 100644 --- a/md/UBERON/32/UBERON_2007032.md +++ b/md/UBERON/32/UBERON_2007032.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3000032.md b/md/UBERON/32/UBERON_3000032.md index 802452cbf3..30d7214a91 100644 --- a/md/UBERON/32/UBERON_3000032.md +++ b/md/UBERON/32/UBERON_3000032.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3000132.md b/md/UBERON/32/UBERON_3000132.md index 6b86e41e00..f04e2fdfca 100644 --- a/md/UBERON/32/UBERON_3000132.md +++ b/md/UBERON/32/UBERON_3000132.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/32/UBERON_3000332.md b/md/UBERON/32/UBERON_3000332.md index 77a381a6e2..7f0d27020f 100644 --- a/md/UBERON/32/UBERON_3000332.md +++ b/md/UBERON/32/UBERON_3000332.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3000432.md b/md/UBERON/32/UBERON_3000432.md index 422c651b82..d6c5430fcc 100644 --- a/md/UBERON/32/UBERON_3000432.md +++ b/md/UBERON/32/UBERON_3000432.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3000832.md b/md/UBERON/32/UBERON_3000832.md index 66f4be0258..7d030a28a1 100644 --- a/md/UBERON/32/UBERON_3000832.md +++ b/md/UBERON/32/UBERON_3000832.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000832 * *Label* = anterior lamina recurvata - * *Definition* = Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3010032.md b/md/UBERON/32/UBERON_3010032.md index c871ccc32e..ab4b60896d 100644 --- a/md/UBERON/32/UBERON_3010032.md +++ b/md/UBERON/32/UBERON_3010032.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010032 * *Label* = M. semitendinosus - * *Definition* = Originates by two tendons: one on the postero-ventral aspect of the pelvic rim, the other, a dorsal tendon from the postero-dorsal pelvic rim under the ventral edge of M. semimembranosus. Inserts on the ventral surface of the tibiofibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates by two tendons: one on the postero-ventral aspect of the pelvic rim, the other, a dorsal tendon from the postero-dorsal pelvic rim under the ventral edge of M. semimembranosus. Inserts on the ventral surface of the tibiofibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3010132.md b/md/UBERON/32/UBERON_3010132.md index d03940e212..9404d5ff62 100644 --- a/md/UBERON/32/UBERON_3010132.md +++ b/md/UBERON/32/UBERON_3010132.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3010432.md b/md/UBERON/32/UBERON_3010432.md index af68317a43..59bd2b27e1 100644 --- a/md/UBERON/32/UBERON_3010432.md +++ b/md/UBERON/32/UBERON_3010432.md @@ -6,7 +6,7 @@ ## Synonyms - * gastrocoel roof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010432] + * gastrocoel roof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010432 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3010632.md b/md/UBERON/32/UBERON_3010632.md index 7038343089..f78f94be24 100644 --- a/md/UBERON/32/UBERON_3010632.md +++ b/md/UBERON/32/UBERON_3010632.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010632 * *Label* = ventral ramus of occulomotor nerve - * *Definition* = Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:DSM] + * *Definition* = Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:DSM ] ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_3010832.md b/md/UBERON/32/UBERON_3010832.md index 0a307259cf..213e09085b 100644 --- a/md/UBERON/32/UBERON_3010832.md +++ b/md/UBERON/32/UBERON_3010832.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010832 * *Label* = occipital segment - * *Definition* = Metameric segment forming the back of the skull. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Metameric segment forming the back of the skull. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_4200032.md b/md/UBERON/32/UBERON_4200032.md index 81e90185d7..113f271722 100644 --- a/md/UBERON/32/UBERON_4200032.md +++ b/md/UBERON/32/UBERON_4200032.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Ad - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_4200132.md b/md/UBERON/32/UBERON_4200132.md index 253af9b6e4..05d634e744 100644 --- a/md/UBERON/32/UBERON_4200132.md +++ b/md/UBERON/32/UBERON_4200132.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/32/UBERON_4300032.md b/md/UBERON/32/UBERON_4300032.md index 07996d7bad..a12e251ab6 100644 --- a/md/UBERON/32/UBERON_4300032.md +++ b/md/UBERON/32/UBERON_4300032.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0000033.md b/md/UBERON/33/UBERON_0000033.md index a03144b0c2..d35353ab0f 100644 --- a/md/UBERON/33/UBERON_0000033.md +++ b/md/UBERON/33/UBERON_0000033.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000033 * *Label* = head - * *Definition* = The head is the anterior-most division of the body [GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060322[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head] + * *Definition* = The head is the anterior-most division of the body [GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060322, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head ] ## Synonyms - * head (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7154] + * head (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7154 ] * adult head - * cephalic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SPD:0000016] + * cephalic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SPD:0000016 ] ## Cross-references @@ -36,8 +36,8 @@ * SPD:0000016 * TAO:0001114 * TGMA:0000002 - * UMLS:C0018670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1230] - * UMLS:C0018670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head] + * UMLS:C0018670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1230 ] + * UMLS:C0018670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head ] * VHOG:0001644 * WBbt:0005739 * Wikipedia:Head @@ -70,8 +70,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrate evolution has been characterized by a fresh and vast array of cranial structures that collectively form the head.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0000333.md b/md/UBERON/33/UBERON_0000333.md index f66d5637cf..f09343926a 100644 --- a/md/UBERON/33/UBERON_0000333.md +++ b/md/UBERON/33/UBERON_0000333.md @@ -3,49 +3,49 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000333 * *Label* = intestinal gland - * *Definition* = A gland that is part of the intestinal mucosa. Examples include the intestinal crypts, duodenal gland[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A gland that is part of the intestinal mucosa. Examples include the intestinal crypts, duodenal gland[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that some sources treat 'intestinal gland' as synonymous with ## Synonyms - * bowel mucosa gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel mucosa of organ gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel mucous membrane gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel organ mucosa gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of bowel mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of bowel mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of bowel mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of bowel organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of intestinal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of intestine mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of intestine mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of intestine mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of intestine organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucosa of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucosa of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucosa of organ of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucosa of organ of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucous membrane of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mucous membrane of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of organ mucosa of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of organ mucosa of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * glandula intestinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15052] - * intestinal mucosa gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine mucosa gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine mucosa of organ gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine mucous membrane gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine organ mucosa gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bowel gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of intestine gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bowel gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of intestine gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bowel gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of intestine gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bowel gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of intestine gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Lieberkuehn`s gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000640] - * crypt of Lieberkuehn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000640] - * gland of Lieberkuehn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000640] + * bowel mucosa gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel mucosa of organ gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel mucous membrane gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel organ mucosa gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of bowel mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of bowel mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of bowel mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of bowel organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of intestinal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of intestine mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of intestine mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of intestine mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of intestine organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucosa of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucosa of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucosa of organ of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucosa of organ of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucous membrane of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mucous membrane of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of organ mucosa of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of organ mucosa of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * glandula intestinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15052 ] + * intestinal mucosa gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine mucosa gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine mucosa of organ gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine mucous membrane gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine organ mucosa gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bowel gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of intestine gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bowel gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of intestine gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bowel gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of intestine gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bowel gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of intestine gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Lieberkuehn`s gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000640 ] + * crypt of Lieberkuehn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000640 ] + * gland of Lieberkuehn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000640 ] * glandulae intestinales ## Cross-references @@ -65,15 +65,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestinal mucosa](../../UBERON/42/UBERON_0001242.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0000433.md b/md/UBERON/33/UBERON_0000433.md index 7d1293d6ea..dbd08a682d 100644 --- a/md/UBERON/33/UBERON_0000433.md +++ b/md/UBERON/33/UBERON_0000433.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000433 * *Label* = posterior paraventricular nucleus of thalamus - * *Definition* = The posterior of the two nuclei paraventriculares thalami. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002456] + * *Definition* = The posterior of the two nuclei paraventriculares thalami. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002456 ] ## Synonyms - * dorsal paraventricular nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76961] - * caecal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002477] - * nucleus paraventricularis posterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002456] - * nucleus paraventricularis posterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002477] - * posterior paraventricular nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002456] - * posterior paraventricular nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002456] - * posterior paraventricular nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PARP] + * dorsal paraventricular nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76961 ] + * caecal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002477 ] + * nucleus paraventricularis posterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002456 ] + * nucleus paraventricularis posterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002477 ] + * posterior paraventricular nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002456 ] + * posterior paraventricular nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002456 ] + * posterior paraventricular nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PARP ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0000933.md b/md/UBERON/33/UBERON_0000933.md index 1142a6de7f..685ee116fa 100644 --- a/md/UBERON/33/UBERON_0000933.md +++ b/md/UBERON/33/UBERON_0000933.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000933 * *Label* = pharyngeal muscle - * *Definition* = A muscle that acts on the pharynx[WP, vetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_muscles[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A muscle that acts on the pharynx[WP, vetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_muscles, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP] ## Synonyms - * branchial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000172] + * branchial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000172 ] * muscle of pharynx - * muscle organ of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * pharynx muscle - * pharynx muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * branchial muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000172[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * musculi pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001048] - * tunica muscularis pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pharynx muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * branchial muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000172, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * musculi pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001048 ] + * tunica muscularis pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A02.633.567.800 * SCTID:244798004 * TAO:0000172 - * UMLS:C0031346 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Muscle] + * UMLS:C0031346 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Muscle ] * Wikipedia:Pharyngeal_muscles * ZFA:0000172 * http://upload.wikimedia.org/wikipedia/commons/3/35/Gray1030.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A pharyngeal muscle is any muscle that forms part of the pharynx[GO]. * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_67169 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001033.md b/md/UBERON/33/UBERON_0001033.md index 9aaddde625..dfd687bc25 100644 --- a/md/UBERON/33/UBERON_0001033.md +++ b/md/UBERON/33/UBERON_0001033.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001033 * *Label* = gustatory system - * *Definition* = A subset of the sensory system for the sensing of taste. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gustatory_system] + * *Definition* = A subset of the sensory system for the sensing of taste. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gustatory_system ] * *Comment* = in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes ## Synonyms @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable of part of](../../RO/16/RO_0002216.md) some [detection of chemical stimulus involved in sensory perception of taste](../../GO/12/GO_0050912.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory system for the sense of taste[NIF_GrossAnatomy:nlx_anat_090803]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sensory system used for the sense of taste.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gustatory - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001133.md b/md/UBERON/33/UBERON_0001133.md index d9b2939c1c..9e9e34f835 100644 --- a/md/UBERON/33/UBERON_0001133.md +++ b/md/UBERON/33/UBERON_0001133.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001133 * *Label* = cardiac muscle tissue - * *Definition* = Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14068] + * *Definition* = Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14068 ] * *Comment* = check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit ## Synonyms * cardiac muscle - * cardiac muscle muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000134] + * cardiac muscle muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000134 ] ## Cross-references @@ -62,7 +62,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [cardiac muscle cell](../../CL/46/CL_0000746.md) and [striated muscle tissue](../../UBERON/36/UBERON_0002036.md) ## Other Logical Axioms @@ -70,8 +70,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007096 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001233.md b/md/UBERON/33/UBERON_0001233.md index eb8a735ea2..935d7e6a8c 100644 --- a/md/UBERON/33/UBERON_0001233.md +++ b/md/UBERON/33/UBERON_0001233.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001233 * *Label* = right adrenal gland - * *Definition* = An adrenal gland that is in the right side of the abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adrenal gland that is in the right side of the abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in humans, the right adrenal gland is triangular shaped[WP] ## Synonyms - * glandula suprarenalis dexter [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula suprarenalis dexter [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * right suprarenal gland ## Cross-references @@ -16,7 +16,7 @@ * FMA:15629 * MA:0000719 * SCTID:281625001 - * UMLS:C0229559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Adrenal_Gland] + * UMLS:C0229559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Adrenal_Gland ] * ncithesaurus:Right_Adrenal_Gland ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adrenal gland](../../UBERON/69/UBERON_0002369.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001333.md b/md/UBERON/33/UBERON_0001333.md index a89b26f62f..e704d7e740 100644 --- a/md/UBERON/33/UBERON_0001333.md +++ b/md/UBERON/33/UBERON_0001333.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001333 * *Label* = male urethra - * *Definition* = In anatomy, the urethra (from Greek ??????? - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Male_urethra] + * *Definition* = In anatomy, the urethra (from Greek ??????? - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Male_urethra ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:19668 * MA:0002640 * SCTID:264085007 - * UMLS:C0458452 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Male_Urethra] + * UMLS:C0458452 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Male_Urethra ] * Wikipedia:Male_urethra * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png * ncithesaurus:Male_Urethra @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001433.md b/md/UBERON/33/UBERON_0001433.md index acd7a8b1d2..f7481ea202 100644 --- a/md/UBERON/33/UBERON_0001433.md +++ b/md/UBERON/33/UBERON_0001433.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001433 * *Label* = distal carpal bone 4 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hamate_bone] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hamate_bone ] * *Comment* = Taxon notes: articulates with the lunar, distal carpal 3, the ulnare as well as metacarpals 4 and 5.[VSAO]. In the human hand the lunate proximally the fourth and fifth metacarpals distally the triangular medially the capitate laterally[WP] Amphibians: Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements[AAO] ## Synonyms - * distal carpal 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005046] - * hamate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001343] - * hamate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23730] - * unciform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23730] - * carpal 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000850] - * hand distal carpal bone 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001343] - * os hamatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005046] - * os hamatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hamate_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * unciform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001343] - * uncinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001343] + * distal carpal 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005046 ] + * hamate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001343 ] + * hamate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23730 ] + * unciform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23730 ] + * carpal 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000850 ] + * hand distal carpal bone 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001343 ] + * os hamatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005046 ] + * os hamatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hamate_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * unciform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001343 ] + * uncinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001343 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0001343 * OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA * SCTID:181967008 - * UMLS:C0560737 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hamate_Bone] + * UMLS:C0560737 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hamate_Bone ] * VSAO:0005046 * Wikipedia:Hamate_bone * galen:Hamate @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal bone 4 endochondral element](../../UBERON/93/UBERON_0015093.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001533.md b/md/UBERON/33/UBERON_0001533.md index 8ec550d9f3..f4357a10eb 100644 --- a/md/UBERON/33/UBERON_0001533.md +++ b/md/UBERON/33/UBERON_0001533.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001533 * *Label* = subclavian artery - * *Definition* = One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editors notes: Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO) ## Synonyms - * arteria subclavia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria subclavia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * arterial tree of upper limb * pectoral artery * subclavian arterial tree - * PA [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * arteria subclavia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * PA [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * arteria subclavia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA * SCTID:265790007 * TAO:0005086 - * UMLS:C0038530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subclavian_Artery] + * UMLS:C0038530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subclavian_Artery ] * Wikipedia:Subclavian_artery * XAO:0000365 * ZFA:0005086 @@ -45,7 +45,7 @@ ## Superclasses * [systemic artery](../../UBERON/73/UBERON_0004573.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) * [develops from](../../RO/02/RO_0002202.md) some [intersomitic artery](../../UBERON/57/UBERON_0002457.md) ## Equivalencies @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery which supplies blood via branches to the various muscles of the shoulder region and to the forelimb.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001633.md b/md/UBERON/33/UBERON_0001633.md index d25dc8772a..59d55377f6 100644 --- a/md/UBERON/33/UBERON_0001633.md +++ b/md/UBERON/33/UBERON_0001633.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001633 * *Label* = basilar artery - * *Definition* = In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_artery] + * *Definition* = In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -22,7 +22,7 @@ * OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA * SCTID:244215004 * TAO:0005002 - * UMLS:C0004811 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basilar_Artery] + * UMLS:C0004811 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basilar_Artery ] * VHOG:0000237 * Wikipedia:Basilar_artery * ZFA:0005002 @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The major artery supplying the hindbrain, the basilar artery, runs along the ventral keel of the hindbrain in all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001733.md b/md/UBERON/33/UBERON_0001733.md index 8f1faedc45..a890f61036 100644 --- a/md/UBERON/33/UBERON_0001733.md +++ b/md/UBERON/33/UBERON_0001733.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001733 * *Label* = soft palate - * *Definition* = soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060023[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soft_palate] + * *Definition* = soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060023, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soft_palate ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * muscular palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soft_palate] - * palatum molle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soft_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * velum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soft_palate] - * velum palatinum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soft_palate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscular palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soft_palate ] + * palatum molle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soft_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * velum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soft_palate ] + * velum palatinum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soft_palate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A14.549.617.780 * MIAA:0000039 * SCTID:245784004 - * UMLS:C0030219 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Soft_Palate] + * UMLS:C0030219 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Soft_Palate ] * Wikipedia:Soft_palate * http://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A muscular arch-shaped structure [is this an 'anatomical cluster??] that is composed of the musculus uvuli and parts of tensor veli palatini, levator veli palatini, palatoglossus and palatopharyngeus and attaches to the hard palate and modulates the connections between the oral cavity and pharynx soft tissue arch .[FEED] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = velar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001833.md b/md/UBERON/33/UBERON_0001833.md index d8a80b5e10..9246702928 100644 --- a/md/UBERON/33/UBERON_0001833.md +++ b/md/UBERON/33/UBERON_0001833.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001833 * *Label* = lip - * *Definition* = One of the two fleshy folds which surround the opening of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lip[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medterms.com/script/main/art.asp?articlekey=9458] + * *Definition* = One of the two fleshy folds which surround the opening of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lip, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medterms.com/script/main/art.asp?articlekey=9458 ] ## Synonyms - * labia oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lip[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labia oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lip, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * lips ## Cross-references @@ -23,7 +23,7 @@ * OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA * SCTID:181221003 * TAO:0007006 - * UMLS:C0023759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lip] + * UMLS:C0023759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lip ] * VHOG:0000677 * Wikipedia:Lip * ZFA:0007006 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that is one of the two fleshy folds surrounding the opening of the mouth.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = labial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0001933.md b/md/UBERON/33/UBERON_0001933.md index 82acf7e341..a6d6d6bfa1 100644 --- a/md/UBERON/33/UBERON_0001933.md +++ b/md/UBERON/33/UBERON_0001933.md @@ -8,12 +8,12 @@ ## Synonyms * retrochiasmatic region - * RCh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1569[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area retrochiasmatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:396[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus supraopticus diffusus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:396[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * retrochiasmatic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:396] - * retrochiasmatic hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:396] - * supraoptic nucleus, tuberal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:396] + * RCh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1569, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area retrochiasmatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:396, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus supraopticus diffusus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:396, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * retrochiasmatic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:396 ] + * retrochiasmatic hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:396 ] + * supraoptic nucleus, tuberal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:396 ] ## Cross-references @@ -23,8 +23,8 @@ * FMA:62330 * MA:0000841 * NIF_GrossAnatomy:birnlex_1569 - * NeuroNames:396 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1569] - * UMLS:C0262326 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1569] + * NeuroNames:396 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1569 ] + * UMLS:C0262326 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1569 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002033.md b/md/UBERON/33/UBERON_0002033.md index 289441da06..84677474db 100644 --- a/md/UBERON/33/UBERON_0002033.md +++ b/md/UBERON/33/UBERON_0002033.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002033 * *Label* = arrector muscle of hair - * *Definition* = tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arrector_pili_muscle] + * *Definition* = tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arrector_pili_muscle ] ## Synonyms - * arrector pili [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67821[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000778] - * arrector pili muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26779[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010679] - * arrector pili smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000778] - * arrector pilli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010679] - * arrector pilli muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010679] - * arectores pilorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005132] - * erector pili [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005132] - * erectores pilorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005132] - * pilomotor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005132] + * arrector pili [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67821, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000778 ] + * arrector pili muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26779, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010679 ] + * arrector pili smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000778 ] + * arrector pilli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010679 ] + * arrector pilli muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010679 ] + * arectores pilorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005132 ] + * erector pili [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005132 ] + * erectores pilorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005132 ] + * pilomotor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005132 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002133.md b/md/UBERON/33/UBERON_0002133.md index 9ccf0db159..5e14adf064 100644 --- a/md/UBERON/33/UBERON_0002133.md +++ b/md/UBERON/33/UBERON_0002133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002133 * *Label* = atrioventricular valve - * *Definition* = Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7233] + * *Definition* = Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7233 ] * *Comment* = AO notes: in ZFA this is part of both atrium and ventricle, but we use a connecting relationship here; see also notes for left and right. ## Synonyms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Valve in the heart through which blood flows from the atria to the ventricles. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The conus arteriosus is the most distal part of the primitive fish heart and forms the connection between the ventricle and the ventral aorta. At the sinoatrial, the atrioventricular, and the ventriculoconal junctions, valves developed to prevent backflow of blood during relaxation of the preceding compartment.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002233.md b/md/UBERON/33/UBERON_0002233.md index 2641ca47a4..ae74c28c6c 100644 --- a/md/UBERON/33/UBERON_0002233.md +++ b/md/UBERON/33/UBERON_0002233.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002233 * *Label* = tectorial membrane of cochlea - * *Definition* = The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + J:77634[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003149] + * *Definition* = The overlaying membrane of the cochlear duct, an extracellular matrix of the inner ear that contacts the stereocilia bundles of specialized sensory hair cells; sound induces movement of these hair cells relative to the tectorial membrane, deflects the stereocilia, and leads to fluctuations in hair cell membrane potential, transducing sound into electrical signals[MP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = J:77634, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003149 ] ## Synonyms - * tectorial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001199] + * tectorial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001199 ] * tectorial membrane of spiral organ of cochlea ## Cross-references @@ -18,8 +18,8 @@ * MESH:A09.246.631.246.292.906 * NIF_GrossAnatomy:birnlex_2531 * SCTID:368960006 - * UMLS:C0039432 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tectorial_Membrane] - * UMLS:C1184928 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2531] + * UMLS:C0039432 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tectorial_Membrane ] + * UMLS:C1184928 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2531 ] * Wikipedia:Tectorial_membrane_%28cochlea%29 * ncithesaurus:Tectorial_Membrane @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia[Wikipedia:Tectorial_membrane_%28cochlea%29]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002333.md b/md/UBERON/33/UBERON_0002333.md index 01f0b90a86..4c98b9f099 100644 --- a/md/UBERON/33/UBERON_0002333.md +++ b/md/UBERON/33/UBERON_0002333.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002333 * *Label* = pulmonary trunk - * *Definition* = Pulmonary arterial trunk which is continuous with the right ventricle.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_artery] + * *Definition* = Pulmonary arterial trunk which is continuous with the right ventricle.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_artery ] ## Synonyms @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An arterial trunk with origin from the right ventricle of the heart, and dividing into the right and left pulmonary arteries, which enter the corresponding lungs and branch with the bronchi. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As in birds, the conus arteriosus split during embryonic development in mammals to produce the pulmonary trunk and single aortic trunk of the adult.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002433.md b/md/UBERON/33/UBERON_0002433.md index 45f2efaf0d..abb71f562c 100644 --- a/md/UBERON/33/UBERON_0002433.md +++ b/md/UBERON/33/UBERON_0002433.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002433 * *Label* = pars tuberalis of adenohypophysis - * *Definition* = The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pars_tuberalis] + * *Definition* = The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pars_tuberalis ] ## Synonyms - * pars infundibularis of adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74631] - * pars tuberalis (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74631[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars tuberalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000856] - * pars tuberalis adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74631[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars tuberalis of anterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74631] - * pars tuberalis adenohypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pars_tuberalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars infundibularis of adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74631 ] + * pars tuberalis (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74631, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars tuberalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000856 ] + * pars tuberalis adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74631, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars tuberalis of anterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74631 ] + * pars tuberalis adenohypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pars_tuberalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002533.md b/md/UBERON/33/UBERON_0002533.md index 0f19b72807..20322e21ca 100644 --- a/md/UBERON/33/UBERON_0002533.md +++ b/md/UBERON/33/UBERON_0002533.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002533 * *Label* = tail bud - * *Definition* = The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001445] + * *Definition* = The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001445 ] * *Comment* = Editor notes: See notes from UBERONREF:0000002 ## Synonyms * tailbud - * end bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001445] - * tail bud mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000077] + * end bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001445 ] + * tail bud mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000077 ] ## Cross-references @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Rapidly proliferating mass of cells at the caudal extremity of the embryo. Its formation is reflected in a caudal carving of the posterior portion of the archenteric canal at NF stage 22. With its further outgrowth, the postanal gut primordium becomes stretched. Its lumen is in broad communication with the hindgut at NF stage 25.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (5) a larva or embryo with a postanal tail.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002633.md b/md/UBERON/33/UBERON_0002633.md index 11d15f9e5c..45bc4feefa 100644 --- a/md/UBERON/33/UBERON_0002633.md +++ b/md/UBERON/33/UBERON_0002633.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002633 * *Label* = motor nucleus of trigeminal nerve - * *Definition* = The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_motor_nucleus] + * *Definition* = The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_motor_nucleus ] * *Comment* = note this in ZFA this is part of the medulla; pons is a dubious structure for zebrafish ## Synonyms - * motor nucleus V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001365] + * motor nucleus V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001365 ] * motor nucleus of cranial nerve v - * motor nucleus of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54562] - * motor trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001075] - * nV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001365] - * nucleus motorius nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54562[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigeminal V motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001029] - * trigeminal motor nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * trigeminal motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001365] - * Motor nucleus of trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V] - * motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:559] - * motor nucleus of the trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:559] - * motor nucleus of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:559] - * nucleus motorius nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:559[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus motorius nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_motor_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus motorius trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:559[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * motor nucleus of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54562 ] + * motor trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001075 ] + * nV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001365 ] + * nucleus motorius nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54562, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigeminal V motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001029 ] + * trigeminal motor nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * trigeminal motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001365 ] + * Motor nucleus of trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V ] + * motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:559 ] + * motor nucleus of the trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:559 ] + * motor nucleus of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:559 ] + * nucleus motorius nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:559, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus motorius nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_motor_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus motorius trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:559, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,11 +36,11 @@ * FMA:54562 * MA:0001029 * NIF_GrossAnatomy:birnlex_1222 - * NeuroNames:559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1222] + * NeuroNames:559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1222 ] * SCTID:38390003 * TAO:0001365 - * UMLS:C0228700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1222] - * UMLS:C0228700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve] + * UMLS:C0228700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1222 ] + * UMLS:C0228700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve ] * VHOG:0001355 * Wikipedia:Trigeminal_motor_nucleus * ZFA:0001365 @@ -73,8 +73,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002733.md b/md/UBERON/33/UBERON_0002733.md index 74bc3b243a..1aea49197e 100644 --- a/md/UBERON/33/UBERON_0002733.md +++ b/md/UBERON/33/UBERON_0002733.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002733 * *Label* = intralaminar nuclear group - * *Definition* = The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intralaminar_thalamic_nuclei] + * *Definition* = The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intralaminar_thalamic_nuclei ] ## Synonyms - * intralaminar nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021] - * intralaminar nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021] - * intralaminar nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021] - * intralaminar thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021] - * nonspecific thalamic system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021] - * nuclei intralaminares (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1530] - * nuclei intralaminares thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ILG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1530[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Intralaminar group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ILM] - * Intralaminar nuclei of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ILM] - * Intralaminar thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ILM] - * Intralaminar thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ING] + * intralaminar nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021 ] + * intralaminar nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021 ] + * intralaminar nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021 ] + * intralaminar thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021 ] + * nonspecific thalamic system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021 ] + * nuclei intralaminares (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1530 ] + * nuclei intralaminares thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ILG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1530, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Intralaminar group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ILM ] + * Intralaminar nuclei of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ILM ] + * Intralaminar thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ILM ] + * Intralaminar thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ING ] ## Cross-references @@ -30,7 +30,7 @@ * GAID:660 * MESH:A08.186.211.730.385.826.701.460 * NIF_GrossAnatomy:birnlex_1530 - * NeuroNames:317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1530] + * NeuroNames:317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1530 ] * SCTID:279159009 * Wikipedia:Intralaminar_thalamic_nuclei * http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Thalmus.png/200px-Thalmus.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002833.md b/md/UBERON/33/UBERON_0002833.md index 8244a8e7d9..a40d7dd280 100644 --- a/md/UBERON/33/UBERON_0002833.md +++ b/md/UBERON/33/UBERON_0002833.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0002933.md b/md/UBERON/33/UBERON_0002933.md index 6e4e809398..1d53b6e776 100644 --- a/md/UBERON/33/UBERON_0002933.md +++ b/md/UBERON/33/UBERON_0002933.md @@ -6,15 +6,15 @@ ## Synonyms - * anterior commissure nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61883] - * bed nucleus of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61883] - * nucleus of commissura anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61883] - * anterior commissural nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AC] - * bed nucleus of the anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:266] - * nucleus commissurae anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:266[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus commissurae anterioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:266[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interstitialis commissurae anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:266[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:266] + * anterior commissure nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61883 ] + * bed nucleus of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61883 ] + * nucleus of commissura anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61883 ] + * anterior commissural nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AC ] + * bed nucleus of the anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:266 ] + * nucleus commissurae anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:266, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus commissurae anterioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:266, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interstitialis commissurae anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:266, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:266 ] ## Cross-references @@ -26,8 +26,8 @@ * BM:Tel-ACN * FMA:61883 * NIF_GrossAnatomy:birnlex_712 - * NeuroNames:266 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_712] - * UMLS:C0262292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_712] + * NeuroNames:266 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_712 ] + * UMLS:C0262292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_712 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003033.md b/md/UBERON/33/UBERON_0003033.md index 52f020c938..aab834942b 100644 --- a/md/UBERON/33/UBERON_0003033.md +++ b/md/UBERON/33/UBERON_0003033.md @@ -6,13 +6,13 @@ ## Synonyms - * nucleus suprageniculatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_953] - * suprageniculate thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62222] - * SG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_953[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * subgeniculate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SGN] - * supargenual nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SG] - * supragenual nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SG] - * supragenual nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SGe] + * nucleus suprageniculatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_953 ] + * suprageniculate thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62222 ] + * SG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_953, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * subgeniculate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SGN ] + * supargenual nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SG ] + * supragenual nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SG ] + * supragenual nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SGe ] ## Cross-references @@ -24,9 +24,9 @@ * BM:Die-Th-SG * FMA:62222 * NIF_GrossAnatomy:birnlex_953 - * NeuroNames:363 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_953] + * NeuroNames:363 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_953 ] * SCTID:369180001 - * UMLS:C0152346 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_953] + * UMLS:C0152346 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_953 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003133.md b/md/UBERON/33/UBERON_0003133.md index b79bd32111..bc4f4ca8b7 100644 --- a/md/UBERON/33/UBERON_0003133.md +++ b/md/UBERON/33/UBERON_0003133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003133 * *Label* = reproductive organ - * *Definition* = An organ involved in reproduction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:xp] + * *Definition* = An organ involved in reproduction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:xp ] * *Comment* = GO uses genitalia for the singular organ ## Synonyms @@ -11,7 +11,7 @@ * genital organ * reproductive system organ * sex organ - * genitalia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * genitalia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -21,7 +21,7 @@ * OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA * SCTID:128181006 * TGMA:0000591 - * UMLS:C0017420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Genitalia] + * UMLS:C0017420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Genitalia ] * WBbt:0008422 * ncithesaurus:Genitalia @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [reproduction](../../GO/03/GO_0000003.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003233.md b/md/UBERON/33/UBERON_0003233.md index 37c5c433d5..b79f2220e3 100644 --- a/md/UBERON/33/UBERON_0003233.md +++ b/md/UBERON/33/UBERON_0003233.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003233 * *Label* = epithelium of shoulder - * *Definition* = An epithelium that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003333.md b/md/UBERON/33/UBERON_0003333.md index 61ffa40f0f..23529a854d 100644 --- a/md/UBERON/33/UBERON_0003333.md +++ b/md/UBERON/33/UBERON_0003333.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003333 * *Label* = submucosa of jejunum - * *Definition* = A submucosa that is part of a jejunum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a jejunum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * jejunal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14950] - * jejunum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * jejunal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14950 ] + * jejunum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003433.md b/md/UBERON/33/UBERON_0003433.md index dfe2d077f2..8d7688379b 100644 --- a/md/UBERON/33/UBERON_0003433.md +++ b/md/UBERON/33/UBERON_0003433.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003433 * *Label* = arm nerve - * *Definition* = A nerve that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003533.md b/md/UBERON/33/UBERON_0003533.md index 2fe4de1a22..677bace579 100644 --- a/md/UBERON/33/UBERON_0003533.md +++ b/md/UBERON/33/UBERON_0003533.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003533 * *Label* = manual digit skin - * *Definition* = A zone of skin that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of hand skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000626] - * skin of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit of hand skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000626 ] + * skin of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:38304 * MA:0000626 * SCTID:361711001 - * UMLS:C1708318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_Skin] + * UMLS:C1708318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_Skin ] * ncithesaurus:Hand_Digit_Skin ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003633.md b/md/UBERON/33/UBERON_0003633.md index 18fb560dbc..33eb640920 100644 --- a/md/UBERON/33/UBERON_0003633.md +++ b/md/UBERON/33/UBERON_0003633.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003633 * *Label* = pedal digit 3 - * *Definition* = 3rd digit of the hind autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = 3rd digit of the hind autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * 3rd toe - * digit 3 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17466] - * digitus tertius (III) pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002351] - * digitus tertius [iii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25051] - * digitus tertius pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002351[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000467] + * digit 3 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17466 ] + * digitus tertius (III) pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002351 ] + * digitus tertius [iii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25051 ] + * digitus tertius pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002351, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000467 ] * hind digit 3 - * hind digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010646] - * hind limb digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010646 ] + * hind limb digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit III - * third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25051] - * third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25051] - * toe 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002047] - * foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25051 ] + * third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25051 ] + * toe 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002047 ] + * foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:25051 * MA:0000467 * SCTID:362821001 - * UMLS:C1708083 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_3] + * UMLS:C1708083 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_3 ] * ncithesaurus:Foot_Digit_3 ## Subsets @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 3](../../UBERON/50/UBERON_0006050.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003833.md b/md/UBERON/33/UBERON_0003833.md index 4b39f44ae1..5a280f5c41 100644 --- a/md/UBERON/33/UBERON_0003833.md +++ b/md/UBERON/33/UBERON_0003833.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003833 * *Label* = abdominal segment muscle - * *Definition* = A muscle organ that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment of trunk muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdominal segment of trunk muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0003933.md b/md/UBERON/33/UBERON_0003933.md index eb8359492a..6bb698b88b 100644 --- a/md/UBERON/33/UBERON_0003933.md +++ b/md/UBERON/33/UBERON_0003933.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003933 * *Label* = cranial cartilage - * *Definition* = A cartilage element that is part of the cranial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001458[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A cartilage element that is part of the cranial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001458, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cartilage of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranium cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cartilage of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranium cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cranial skeletal system](../../UBERON/23/UBERON_0010323.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage which is part of the cranium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004033.md b/md/UBERON/33/UBERON_0004033.md index cb1b945139..e9f00386d2 100644 --- a/md/UBERON/33/UBERON_0004033.md +++ b/md/UBERON/33/UBERON_0004033.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004033 * *Label* = podocyte slit junction - * *Definition* = the gaps between the interdigitated foot processes of the podocyte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008062] + * *Definition* = the gaps between the interdigitated foot processes of the podocyte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008062 ] * *Comment* = TODO - submit to GO ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004133.md b/md/UBERON/33/UBERON_0004133.md index ccc097e5e5..8725893e45 100644 --- a/md/UBERON/33/UBERON_0004133.md +++ b/md/UBERON/33/UBERON_0004133.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004133 * *Label* = salivatory nucleus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021751] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021751 ] ## Synonyms - * salivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021751] + * salivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021751 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004233.md b/md/UBERON/33/UBERON_0004233.md index 3048f9627e..ce4223490b 100644 --- a/md/UBERON/33/UBERON_0004233.md +++ b/md/UBERON/33/UBERON_0004233.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004233 * *Label* = lower respiratory tract smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a lower respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a lower respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower respiratory tract](../../UBERON/58/UBERON_0001558.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004333.md b/md/UBERON/33/UBERON_0004333.md index de2d503a10..9fc8854bdc 100644 --- a/md/UBERON/33/UBERON_0004333.md +++ b/md/UBERON/33/UBERON_0004333.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004333 * *Label* = proximal phalanx of pedal digit 2 - * *Definition* = A proximal phalanx that is part of a pedal digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd toe proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 2nd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32618] - * proximal phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32618] + * 2nd toe proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 2nd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32618 ] + * proximal phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32618 ] * proximal phalanx of the 2nd toe - * second proximal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32618] + * second proximal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32618 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004433.md b/md/UBERON/33/UBERON_0004433.md index 567cd52f6d..535f054a3d 100644 --- a/md/UBERON/33/UBERON_0004433.md +++ b/md/UBERON/33/UBERON_0004433.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004433 * *Label* = proximal epiphysis of distal phalanx of manual digit 3 - * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37517] - * base of distal phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37517] - * base of distal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37517] - * proximal epiphysis of distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37517[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * base of distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37517 ] + * base of distal phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37517 ] + * base of distal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37517 ] + * proximal epiphysis of distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37517, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 3](../../UBERON/12/UBERON_0004312.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004533.md b/md/UBERON/33/UBERON_0004533.md index bf307431ec..230e0c8d1d 100644 --- a/md/UBERON/33/UBERON_0004533.md +++ b/md/UBERON/33/UBERON_0004533.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004533 * *Label* = left testicle - * *Definition* = A testis that is in the left side of the genitalia [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A testis that is in the left side of the genitalia [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001746] + * left testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001746 ] ## Cross-references * FMA:7212 * MA:0001746 * SCTID:367720001 - * UMLS:C0227998 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Testis] + * UMLS:C0227998 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Testis ] * ncithesaurus:Left_Testis ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [reproductive system](../../UBERON/90/UBERON_0000990.md) and [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004633.md b/md/UBERON/33/UBERON_0004633.md index bc4f903042..8fe245c372 100644 --- a/md/UBERON/33/UBERON_0004633.md +++ b/md/UBERON/33/UBERON_0004633.md @@ -7,9 +7,9 @@ ## Synonyms - * Ninth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10014] - * T9 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10014] - * ninth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10014] + * Ninth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10014 ] + * T9 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10014 ] + * ninth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10014 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:10014 * MA:0001446 * SCTID:181837003 - * UMLS:C0459954 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T9_Vertebra] + * UMLS:C0459954 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T9_Vertebra ] * ncithesaurus:T9_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004733.md b/md/UBERON/33/UBERON_0004733.md index 37d107a867..5962e89129 100644 --- a/md/UBERON/33/UBERON_0004733.md +++ b/md/UBERON/33/UBERON_0004733.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004733 * *Label* = segmental subdivision of hindbrain - * *Definition* = An organ segment that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ segment that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindbrain segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61998] - * segment of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61998] + * hindbrain segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61998 ] + * segment of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61998 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ segment](../../UBERON/63/UBERON_0000063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004833.md b/md/UBERON/33/UBERON_0004833.md index 7eb00470d5..d55e94dd69 100644 --- a/md/UBERON/33/UBERON_0004833.md +++ b/md/UBERON/33/UBERON_0004833.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004833 * *Label* = lip skeletal muscle - * *Definition* = A portion of skeletal muscle tissue that is part of a lip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a lip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: this class is derived from MA. Consider re-modeling this as being a muscle that acts on the lips. See: http://en.wikipedia.org/wiki/Lip#Muscles_acting_on_the_lips ## Synonyms - * lip skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lip skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lip](../../UBERON/33/UBERON_0001833.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0004933.md b/md/UBERON/33/UBERON_0004933.md index 1ba22f6743..8effe019b5 100644 --- a/md/UBERON/33/UBERON_0004933.md +++ b/md/UBERON/33/UBERON_0004933.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004933 * *Label* = submucosa of fundus of stomach - * *Definition* = A submucosa that is part of a fundus of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a fundus of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fundus gastricus (ventricularis) submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach fundus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of fundus gastricus (ventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of stomach fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fundus gastricus (ventricularis) submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach fundus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of fundus gastricus (ventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of stomach fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fundus of stomach](../../UBERON/60/UBERON_0001160.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005033.md b/md/UBERON/33/UBERON_0005033.md index 27c9be9cb3..88190e2e75 100644 --- a/md/UBERON/33/UBERON_0005033.md +++ b/md/UBERON/33/UBERON_0005033.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005033 * *Label* = mucosa of gallbladder - * *Definition* = A mucosa that is part of a gallbladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a gallbladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gall bladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa (vesica biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14662] - * tunica mucosa vesicae biliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14662[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gall bladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa (vesica biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14662 ] + * tunica mucosa vesicae biliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14662, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gallbladder](../../UBERON/10/UBERON_0002110.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005133.md b/md/UBERON/33/UBERON_0005133.md index 3ed75c238b..84091bc90e 100644 --- a/md/UBERON/33/UBERON_0005133.md +++ b/md/UBERON/33/UBERON_0005133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005133 * *Label* = metanephric glomerulus vasculature - * *Definition* = The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072239] + * *Definition* = The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072239 ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [renal glomerulus vasculature](../../UBERON/90/UBERON_0004190.md) ## Other Logical Axioms @@ -30,8 +30,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005143 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005233.md b/md/UBERON/33/UBERON_0005233.md index 3eb8849d4f..b4986d4001 100644 --- a/md/UBERON/33/UBERON_0005233.md +++ b/md/UBERON/33/UBERON_0005233.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005233 * *Label* = medial-nasal process ectoderm - * *Definition* = An ectoderm that is part of a medial nasal prominence [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a medial nasal prominence [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial nasal prominence](../../UBERON/68/UBERON_0004068.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005333.md b/md/UBERON/33/UBERON_0005333.md index ffb4ee50af..1d299aa044 100644 --- a/md/UBERON/33/UBERON_0005333.md +++ b/md/UBERON/33/UBERON_0005333.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005333 * *Label* = mammary bud - * *Definition* = Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060648[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/mammary+bud] + * *Definition* = Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060648, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/mammary+bud ] ## Synonyms - * mammary gland bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060648] + * mammary gland bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060648 ] * milk bud ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004181 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005433.md b/md/UBERON/33/UBERON_0005433.md index c801e6a7d3..46c43ef2e9 100644 --- a/md/UBERON/33/UBERON_0005433.md +++ b/md/UBERON/33/UBERON_0005433.md @@ -7,12 +7,12 @@ ## Synonyms - * autonomic division of peripheral nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553] - * autonomic part of peripheral nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553] - * divisio autonomica systematis nervosi peripherici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars autonomica systematis nervosi peripherici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * peripheral autonomic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553] - * peripheral part of autonomic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65553] + * autonomic division of peripheral nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553 ] + * autonomic part of peripheral nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553 ] + * divisio autonomica systematis nervosi peripherici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars autonomica systematis nervosi peripherici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * peripheral autonomic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553 ] + * peripheral part of autonomic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65553 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005733.md b/md/UBERON/33/UBERON_0005733.md index bdb31bb6db..5156e852a1 100644 --- a/md/UBERON/33/UBERON_0005733.md +++ b/md/UBERON/33/UBERON_0005733.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005733 * *Label* = limb field - * *Definition* = A ring of cells capable of forming a limb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * *Definition* = A ring of cells capable of forming a limb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] * *Comment* = the central portion of the limb field gives rise to the limb proper. mesenchyme cells proliferate from from the somatic layer of limb field lateral plate mesoderm (limb skeletal precursors) and from the somites (limb muscle precursors) . these mesenchymal cells accumulate under the ectedermal tissue to make a limb bud. // The lateral plate mesoderm in the limb field is also special in that it will induce myoblasts to migrate out from the somites and enter the limb bud. No other region of the lateral plate mesoderm will do that (Hayashi and Ozawa 1995) ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [limb bud](../../UBERON/47/UBERON_0004347.md) and [paired limb/fin field](../../UBERON/32/UBERON_0005732.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0005933.md b/md/UBERON/33/UBERON_0005933.md index 45dce0f1ab..ba1a053ff7 100644 --- a/md/UBERON/33/UBERON_0005933.md +++ b/md/UBERON/33/UBERON_0005933.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006133.md b/md/UBERON/33/UBERON_0006133.md index b466b45bad..bde75ac938 100644 --- a/md/UBERON/33/UBERON_0006133.md +++ b/md/UBERON/33/UBERON_0006133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006133 * *Label* = funiculus of neuraxis - * *Definition* = The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Funiculus_%28neurology%29] + * *Definition* = The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Funiculus_%28neurology%29 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006233.md b/md/UBERON/33/UBERON_0006233.md index 474be56da4..45028a5361 100644 --- a/md/UBERON/33/UBERON_0006233.md +++ b/md/UBERON/33/UBERON_0006233.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006233 * *Label* = female genital tubercle - * *Definition* = A differentiated genital tubercle that is part of a female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A differentiated genital tubercle that is part of a female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * genital tubercle of female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18680] + * genital tubercle of female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18680 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [differentiated genital tubercle](../../UBERON/57/UBERON_0011757.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006333.md b/md/UBERON/33/UBERON_0006333.md index 6eb78b3583..393e3bc1a4 100644 --- a/md/UBERON/33/UBERON_0006333.md +++ b/md/UBERON/33/UBERON_0006333.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006333 * *Label* = snout - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Snout] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Snout ] ## Synonyms - * muzzle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001910] + * muzzle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001910 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout[ZFA]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006533.md b/md/UBERON/33/UBERON_0006533.md index 572e83d9ce..2e8a8e2c75 100644 --- a/md/UBERON/33/UBERON_0006533.md +++ b/md/UBERON/33/UBERON_0006533.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006633.md b/md/UBERON/33/UBERON_0006633.md index 2640eeca87..ca7ad570b2 100644 --- a/md/UBERON/33/UBERON_0006633.md +++ b/md/UBERON/33/UBERON_0006633.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006633 * *Label* = coracoid process of scapula - * *Definition* = A process of the scapula in most mammals reprsenting the remnant of the coracoid bone of lower vertebrates thas has become fused with the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/coracoid%20process] + * *Definition* = A process of the scapula in most mammals reprsenting the remnant of the coracoid bone of lower vertebrates thas has become fused with the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/coracoid%20process ] * *Comment* = In humans is situated on its superior border and serves for the attachment of various muscles ## Synonyms - * coracoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracoid_process] - * coracoid process of the scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracoid_process] - * processus coracoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracoid_process[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coracoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracoid_process ] + * coracoid process of the scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracoid_process ] + * processus coracoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracoid_process, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The coracoid process is a small hook-like structure on the lateral edge of the superior anterior portion of the scapula. Pointing laterally forward, it, together with the acromion, serves to stabilize the shoulder joint. It is palpable in the deltopectoral groove between the deltoid and pectoralis major muscles. It is the site of attachment for several structures: * The pectoralis minor muscle - to 3rd to 5th ribs. * The short head of biceps brachii muscle - to Radial tuberosity. * The coracobrachialis muscle - to medial humerus. * The coracoclavicular ligament - to the clavicle. (The ligament is formed by the conoid ligament and trapezoid ligament.) * The coracoacromial ligament - to the acromion[WP][Wikipedia:Coracoid_process]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0006833.md b/md/UBERON/33/UBERON_0006833.md index 5ba81d396f..da7e98b11d 100644 --- a/md/UBERON/33/UBERON_0006833.md +++ b/md/UBERON/33/UBERON_0006833.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006833 * *Label* = lumen of trachea - * *Definition* = An anatomical space that surrounded_by a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumen of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tracheal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7469] + * lumen of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tracheal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7469 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0007233.md b/md/UBERON/33/UBERON_0007233.md index 0470c99143..03d8f304ca 100644 --- a/md/UBERON/33/UBERON_0007233.md +++ b/md/UBERON/33/UBERON_0007233.md @@ -6,8 +6,8 @@ ## Synonyms - * four-cell stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * NF stage 3 (4-cell) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:1000013[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * four-cell stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * NF stage 3 (4-cell) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:1000013, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0007633.md b/md/UBERON/33/UBERON_0007633.md index 658150c6ab..d3793ff455 100644 --- a/md/UBERON/33/UBERON_0007633.md +++ b/md/UBERON/33/UBERON_0007633.md @@ -7,16 +7,16 @@ ## Synonyms - * trapezoid nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_745] - * Tz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_745[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei of trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84023] - * nucleus corporis trapezoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:576[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NTB] - * nucleus of the trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Tz] - * nucleus trapezoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:576[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of nuclei of trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84023] - * trapezoid gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_745] - * trapezoid nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_745] + * trapezoid nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_745 ] + * Tz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_745, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei of trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84023 ] + * nucleus corporis trapezoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:576, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NTB ] + * nucleus of the trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Tz ] + * nucleus trapezoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:576, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of nuclei of trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84023 ] + * trapezoid gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_745 ] + * trapezoid nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_745 ] ## Cross-references @@ -27,10 +27,10 @@ * FMA:84023 * MA:0001018 * NIF_GrossAnatomy:birnlex_745 - * NeuroNames:576 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_745] + * NeuroNames:576 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_745 ] * SCTID:362405000 - * UMLS:C0228436 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_745] - * UMLS:C1289449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_745] + * UMLS:C0228436 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_745 ] + * UMLS:C1289449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_745 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0007833.md b/md/UBERON/33/UBERON_0007833.md index 9f916870c3..d6766e5311 100644 --- a/md/UBERON/33/UBERON_0007833.md +++ b/md/UBERON/33/UBERON_0007833.md @@ -7,7 +7,7 @@ ## Synonyms - * osseous semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * osseous semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0008333.md b/md/UBERON/33/UBERON_0008333.md index c3c25794b0..c7650338fa 100644 --- a/md/UBERON/33/UBERON_0008333.md +++ b/md/UBERON/33/UBERON_0008333.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008333 * *Label* = hilum of inferior olivary complex - * *Definition* = The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * hilum nuclei olivaris inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hilum of inferior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72612] - * inferior olivary hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72612] - * inferior olive hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72612] - * hilum nuclei olivaris caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002300] - * hilum of caudal olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002300] - * hilum of inferior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002300] - * hilum of inferior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:hio] + * hilum nuclei olivaris inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hilum of inferior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72612 ] + * inferior olivary hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72612 ] + * inferior olive hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72612 ] + * hilum nuclei olivaris caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002300 ] + * hilum of caudal olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002300 ] + * hilum of inferior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002300 ] + * hilum of inferior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:hio ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0008433.md b/md/UBERON/33/UBERON_0008433.md index b842209c61..0229c26d1a 100644 --- a/md/UBERON/33/UBERON_0008433.md +++ b/md/UBERON/33/UBERON_0008433.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008433 * *Label* = lumbar vertebral arch - * *Definition* = A neural arch that is part of a lumbar vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural arch that is part of a lumbar vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arch of lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16076] + * arch of lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16076 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural arch](../../UBERON/61/UBERON_0003861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008433 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0008833.md b/md/UBERON/33/UBERON_0008833.md index e1f8187ca0..92e9e41bca 100644 --- a/md/UBERON/33/UBERON_0008833.md +++ b/md/UBERON/33/UBERON_0008833.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008833 * *Label* = great auricular nerve - * *Definition* = The great auricular nerve originates from the cervical plexus, composed of branches of spinal nerves C2 and C3. It provides sensory innervation for the skin over parotid gland and mastoid process, and both surfaces of the outer ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_auricular_nerve] + * *Definition* = The great auricular nerve originates from the cervical plexus, composed of branches of spinal nerves C2 and C3. It provides sensory innervation for the skin over parotid gland and mastoid process, and both surfaces of the outer ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_auricular_nerve ] * *Comment* = todo - check MA grouping; in MA this is part_of pinna - should this be a different relationship? ## Synonyms - * auricular nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001232] - * great auricular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_auricular_nerve] - * greater auricular nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_auricular_nerve] - * nervus auricularis magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_auricular_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * auricular nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001232 ] + * great auricular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_auricular_nerve ] + * greater auricular nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_auricular_nerve ] + * nervus auricularis magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_auricular_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008833 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0008933.md b/md/UBERON/33/UBERON_0008933.md index 8917975901..a05eee7eb4 100644 --- a/md/UBERON/33/UBERON_0008933.md +++ b/md/UBERON/33/UBERON_0008933.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008933 * *Label* = primary somatosensory cortex - * *Comment* = ABA disjointness - Removed relationship: part_of UBERON:0001870 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + MA] + * *Comment* = ABA disjointness - Removed relationship: part_of UBERON:0001870 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = MA ] ## Synonyms - * primary somatosensory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SSp] + * primary somatosensory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SSp ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0009133.md b/md/UBERON/33/UBERON_0009133.md index 12662c6eec..9fe51e36a1 100644 --- a/md/UBERON/33/UBERON_0009133.md +++ b/md/UBERON/33/UBERON_0009133.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009133 * *Label* = pleuroperitoneal membrane - * *Definition* = A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pleuroperitoneal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane] + * *Definition* = A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pleuroperitoneal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane ] ## Synonyms - * pleuroperitoneal fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000757] - * pleuroperitoneal membranes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001483[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * pleuroperitoneal fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000757 ] + * pleuroperitoneal membranes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001483, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * EHDAA2:0001483 * EMAPA:17709 * SCTID:361429005 - * UMLS:C1283968 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pleuroperitoneal_Membrane] + * UMLS:C1283968 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pleuroperitoneal_Membrane ] * VHOG:0000757 * Wikipedia:Pleuroperitoneal * ncithesaurus:Pleuroperitoneal_Membrane @@ -40,8 +40,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009146 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0009633.md b/md/UBERON/33/UBERON_0009633.md index 38d5139360..d5ba6a4208 100644 --- a/md/UBERON/33/UBERON_0009633.md +++ b/md/UBERON/33/UBERON_0009633.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009633 * *Label* = root of sacral nerve - * *Definition* = A spinal nerve root that is part of a sacral nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal nerve root that is part of a sacral nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve root part of sacral spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF:NIF] - * root of sacral spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18028] - * sacral neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18028] + * nerve root part of sacral spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF:NIF ] + * root of sacral spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18028 ] + * sacral neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18028 ] ## Cross-references * FMA:18028 * NIF_GrossAnatomy:birnlex_1518 * SCTID:244454000 - * UMLS:C0581672 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacral_Spinal_Nerve_Root] + * UMLS:C0581672 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacral_Spinal_Nerve_Root ] * ncithesaurus:Sacral_Spinal_Nerve_Root ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral nerve](../../UBERON/25/UBERON_0009625.md) and [spinal nerve root](../../UBERON/23/UBERON_0009623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0009733.md b/md/UBERON/33/UBERON_0009733.md index f971d25c50..f8e31cdd2c 100644 --- a/md/UBERON/33/UBERON_0009733.md +++ b/md/UBERON/33/UBERON_0009733.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009733 * *Label* = sublaminar layers S1 or S2 or S3 - * *Definition* = One of sublaminar layers S1, S2, or S3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S1, S2, or S3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md)or[sublaminar layer S2](../../UBERON/23/UBERON_0008923.md)or[sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010033.md b/md/UBERON/33/UBERON_0010033.md index 0a853ee27f..7b167988db 100644 --- a/md/UBERON/33/UBERON_0010033.md +++ b/md/UBERON/33/UBERON_0010033.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010033 * *Label* = posterior part of tongue - * *Definition* = The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] + * *Definition* = The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] ## Synonyms - * base of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] - * pars posterior (dorsum linguae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * pars posterior dorsi linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars posterior linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars postsulcalis (dorsum linguae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * pharyngeal part of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * pharyngeal portion of dorsum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * posterior part of dorsum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * postsulcal part of dorsum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54645] - * base of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] - * pharyngeal part of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] - * posterior 1/3 of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] - * posterior third of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] - * radix linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tongue] + * base of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] + * pars posterior (dorsum linguae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * pars posterior dorsi linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars posterior linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars postsulcalis (dorsum linguae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * pharyngeal part of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * pharyngeal portion of dorsum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * posterior part of dorsum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * postsulcal part of dorsum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54645 ] + * base of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] + * pharyngeal part of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] + * posterior 1/3 of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] + * posterior third of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] + * radix linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tongue ] ## Cross-references * FMA:54645 * SCTID:362094001 - * UMLS:C0226958 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Base_of_the_Tongue] + * UMLS:C0226958 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Base_of_the_Tongue ] * Wikipedia:Posterior_tongue * http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg * ncithesaurus:Base_of_the_Tongue @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010133.md b/md/UBERON/33/UBERON_0010133.md index b45913ce18..4f3996a29d 100644 --- a/md/UBERON/33/UBERON_0010133.md +++ b/md/UBERON/33/UBERON_0010133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010133 * *Label* = neuroendocrine gland - * *Definition* = An endocrine gland that is part of a nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocrine gland that is part of a nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocrine gland](../../UBERON/68/UBERON_0002368.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010233.md b/md/UBERON/33/UBERON_0010233.md index 51a7fc1eb6..cce9593249 100644 --- a/md/UBERON/33/UBERON_0010233.md +++ b/md/UBERON/33/UBERON_0010233.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010233 * *Label* = stroma of thyroid gland - * *Definition* = the connective tissue that supports the lobules and follicles of the thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/stroma-of-thyroid-gland.html] + * *Definition* = the connective tissue that supports the lobules and follicles of the thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/stroma-of-thyroid-gland.html ] ## Synonyms - * thyroid gland stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86304] + * thyroid gland stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86304 ] * thyroid stroma ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thyroid gland](../../UBERON/46/UBERON_0002046.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010333.md b/md/UBERON/33/UBERON_0010333.md index 993e1dca13..b23da9d08f 100644 --- a/md/UBERON/33/UBERON_0010333.md +++ b/md/UBERON/33/UBERON_0010333.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010333 * *Label* = extraembryonic membrane mesenchyme - * *Definition* = Mesenchyme that is part of a extraembryonic membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a extraembryonic membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [extraembryonic membrane](../../UBERON/31/UBERON_0005631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010533.md b/md/UBERON/33/UBERON_0010533.md index 28b41ddbdb..5fc3faef89 100644 --- a/md/UBERON/33/UBERON_0010533.md +++ b/md/UBERON/33/UBERON_0010533.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010533 * *Label* = metanephros cortex - * *Definition* = The metanephric cortex is the outer region of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072214] + * *Definition* = The metanephric cortex is the outer region of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072214 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010733.md b/md/UBERON/33/UBERON_0010733.md index b6e82c1660..724f64d2c3 100644 --- a/md/UBERON/33/UBERON_0010733.md +++ b/md/UBERON/33/UBERON_0010733.md @@ -6,7 +6,7 @@ ## Synonyms - * sphenoid greater wing cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003450] + * sphenoid greater wing cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003450 ] * alisphenoid cartilage ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alisphenoid endochondral element](../../UBERON/58/UBERON_0015058.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0010933.md b/md/UBERON/33/UBERON_0010933.md index f930914a10..1f5aaedc42 100644 --- a/md/UBERON/33/UBERON_0010933.md +++ b/md/UBERON/33/UBERON_0010933.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010933 * *Label* = orbicularis oris muscle - * *Definition* = In human anatomy, the orbicularis oris muscle is the sphincter muscle around the mouth. This muscle closes the mouth and puckers the lips when it contracts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle] + * *Definition* = In human anatomy, the orbicularis oris muscle is the sphincter muscle around the mouth. This muscle closes the mouth and puckers the lips when it contracts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle ] ## Synonyms - * orbicularis oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46841] - * incisivii labii inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle] - * incisivii labii superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle] - * musculus orbicularis oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nasolabialis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle] - * orbicularis oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oris_muscle] + * orbicularis oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46841 ] + * incisivii labii inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle ] + * incisivii labii superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle ] + * musculus orbicularis oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nasolabialis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle ] + * orbicularis oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oris_muscle ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The orbicularis oris is a superficial facial muscle that attaches to the skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve .[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0011133.md b/md/UBERON/33/UBERON_0011133.md index e41f9a8c07..94ccebafc2 100644 --- a/md/UBERON/33/UBERON_0011133.md +++ b/md/UBERON/33/UBERON_0011133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011133 * *Label* = intermetatarsal joint - * *Definition* = A joint that connects two adjacent metatarsals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermetatarsal_articulations] + * *Definition* = A joint that connects two adjacent metatarsals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermetatarsal_articulations ] * *Comment* = In humans: The base of the first metatarsal is not connected with that of the second by any ligaments; in this respect the great toe resembles the thumb[WP] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0011233.md b/md/UBERON/33/UBERON_0011233.md index 931333e3cb..447eb316d5 100644 --- a/md/UBERON/33/UBERON_0011233.md +++ b/md/UBERON/33/UBERON_0011233.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011233 * *Label* = synovial membrane of synovial tendon sheath - * *Definition* = Synovial sac which surrounds parts of one or more tendons . Examples: synovial tendon sheath of manual digit 2, radial bursa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45087[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_sheath] + * *Definition* = Synovial sac which surrounds parts of one or more tendons . Examples: synovial tendon sheath of manual digit 2, radial bursa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45087, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_sheath ] * *Comment* = Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath] ## Synonyms - * synovium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001823] + * synovium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001823 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0011533.md b/md/UBERON/33/UBERON_0011533.md index 0f5e6c84c1..c3026a30e8 100644 --- a/md/UBERON/33/UBERON_0011533.md +++ b/md/UBERON/33/UBERON_0011533.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011533 * *Label* = abductor pollicis, radioulna-prepollox - * *Definition* = Originates on the distal radioulna and inserts on the palmar prepollex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010805] + * *Definition* = Originates on the distal radioulna and inserts on the palmar prepollex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010805 ] ## Synonyms - * m. abductor pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010805] + * m. abductor pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010805 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0011933.md b/md/UBERON/33/UBERON_0011933.md index b5223079c2..8b0a9831d5 100644 --- a/md/UBERON/33/UBERON_0011933.md +++ b/md/UBERON/33/UBERON_0011933.md @@ -7,7 +7,7 @@ ## Synonyms - * vibrissa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000163] + * vibrissa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000163 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0012133.md b/md/UBERON/33/UBERON_0012133.md index 9a63146166..13da876a0a 100644 --- a/md/UBERON/33/UBERON_0012133.md +++ b/md/UBERON/33/UBERON_0012133.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0012333.md b/md/UBERON/33/UBERON_0012333.md index 772c83feda..a601d275ff 100644 --- a/md/UBERON/33/UBERON_0012333.md +++ b/md/UBERON/33/UBERON_0012333.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012333 * *Label* = ovarian bursa - * *Definition* = a pouch formed by the mesosalpinx and the mesovarium that encloses the infundibulum of the uterine tube and the ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/ovarian] + * *Definition* = a pouch formed by the mesosalpinx and the mesovarium that encloses the infundibulum of the uterine tube and the ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/ovarian ] * *Comment* = Ovaries of some animals are surrounded by a thin membranous sac, the bursa, and are isolated from the peritoneal cavity. The bursa is continuous with the orifice of the oviduct. The bursa is not continuous in other mammals (eg., farm animals and human beings); ovaries of these species can be exposed within the abdomen, and thus ectopic pregnancy is possible[http://www.uwyo.edu/wjm/repro/femanat.htm] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012333 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0013133.md b/md/UBERON/33/UBERON_0013133.md index 75a1fc1342..6e072e9849 100644 --- a/md/UBERON/33/UBERON_0013133.md +++ b/md/UBERON/33/UBERON_0013133.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013133 * *Label* = superior phrenic artery - * *Definition* = The superior phrenic arteries are small and arise from the lower part of the thoracic aorta; they are distributed to the posterior part of the upper surface of the diaphragm, and anastomose with the musculophrenic and pericardiacophrenic arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_phrenic_artery] + * *Definition* = The superior phrenic arteries are small and arise from the lower part of the thoracic aorta; they are distributed to the posterior part of the upper surface of the diaphragm, and anastomose with the musculophrenic and pericardiacophrenic arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_phrenic_artery ] ## Synonyms - * arteriae phrenicae superiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_phrenic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior phrenic branches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_phrenic_artery] + * arteriae phrenicae superiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_phrenic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior phrenic branches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_phrenic_artery ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013133 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0013233.md b/md/UBERON/33/UBERON_0013233.md index 8c579e1bf1..f4f0bc25c6 100644 --- a/md/UBERON/33/UBERON_0013233.md +++ b/md/UBERON/33/UBERON_0013233.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013233 * *Label* = supraorbital gland - * *Definition* = The supraorbital gland is a type of lateral nasal gland found in some species of marine birds, particularly penguins, which removes sodium chloride from the bloodstream. The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_gland] + * *Definition* = The supraorbital gland is a type of lateral nasal gland found in some species of marine birds, particularly penguins, which removes sodium chloride from the bloodstream. The gland's function is similar to that of the kidneys, though it is much more efficient at removing salt, allowing Penguins to survive without access to fresh water. Contrary to popular belief, the gland does not directly convert saltwater to freshwater. The term supraorbital refers to the area just above the eye socket (which is known as the orbit of the eye. ) Living in saltwater environments would naturally pose a large problem for penguins because the ingestion of saltwater would be detrimental to a penguin's health. Although penguins do not directly drink water, it is taken in when they engulf prey. As a result, saltwater enters their system and must be effectively excreted. The supraorbital gland has thus enabled the penguins' survival in such environments due to its water-filtering capability. The gland is located just above the eyes and surrounds a capillary in the head. This capillary constantly strains out the salt in the saltwater that a penguin takes in. Since the byproduct of the gland has roughly five times as much salt as would normally be found in the animal's fluids, the supraorbital gland is highly efficient. The penguin excretes the salt byproduct as a brine through its bill. Often, the fluid drips out, and this gives the appearance of a runny nose. However, the fluid may also be sneezed out. In the absence of saltwater, caused by captivity, the supraorbital gland will lie dormant as it has no other purpose. Having a dormant supraorbital gland does not negatively affect the health of a penguin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_gland ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013233 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0013533.md b/md/UBERON/33/UBERON_0013533.md index ad838e930a..fee01d84e6 100644 --- a/md/UBERON/33/UBERON_0013533.md +++ b/md/UBERON/33/UBERON_0013533.md @@ -6,24 +6,24 @@ ## Synonyms - * B09-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1733] - * Brodmann (1909) area 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1733] - * Brodmann area 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68598] - * Brodmann area 2, caudal postcentral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1733] - * Brodmann's area 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68598] - * Caudal postcentral area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68598] - * area 2 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68598] - * area 2 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1733] - * area postcentralis caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1733] - * B09-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1733[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 2 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1033] + * B09-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1733 ] + * Brodmann (1909) area 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1733 ] + * Brodmann area 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68598 ] + * Brodmann area 2, caudal postcentral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1733 ] + * Brodmann's area 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68598 ] + * Caudal postcentral area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68598 ] + * area 2 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68598 ] + * area 2 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1733 ] + * area postcentralis caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1733 ] + * B09-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1733, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 2 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1033 ] ## Cross-references * FMA:68598 * NIF_GrossAnatomy:birnlex_1733 - * NeuroNames:1033 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1733] - * UMLS:C1272524 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1733] + * NeuroNames:1033 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1733 ] + * UMLS:C1272524 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1733 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0013633.md b/md/UBERON/33/UBERON_0013633.md index 6e1c725ff4..34227243c9 100644 --- a/md/UBERON/33/UBERON_0013633.md +++ b/md/UBERON/33/UBERON_0013633.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013633 * *Label* = intertrochanteric crest - * *Definition* = The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter. Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertrochanteric_crest] + * *Definition* = The intertrochanteric crest is a bony ridge located on the posterior side of the head of the femur, stretching obliquely downward and medially from the summit of the greater trochanter to the lesser trochanter. Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertrochanteric_crest ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0013733.md b/md/UBERON/33/UBERON_0013733.md index 3e76bff087..2d44ae756d 100644 --- a/md/UBERON/33/UBERON_0013733.md +++ b/md/UBERON/33/UBERON_0013733.md @@ -6,8 +6,8 @@ ## Synonyms - * CLi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21653852[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * posterior linear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * CLi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21653852, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * posterior linear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0014533.md b/md/UBERON/33/UBERON_0014533.md index 3101cdec16..e811effd15 100644 --- a/md/UBERON/33/UBERON_0014533.md +++ b/md/UBERON/33/UBERON_0014533.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014533 * *Label* = medullary lamina of thalamus - * *Definition* = Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] + * *Definition* = Medullary laminae of thalamus are layers of myelinated fibres that appear on cross sections of the thalamus. They also are commonly referred to as laminae medullares thalami or medullary layers of thalamus. The specific layers are: Lamina medullaris lateralis (external medullary lamina) - separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus; Lamina medullaris medialis (internal medullary lamina) - positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] ## Synonyms - * external medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] - * internal medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] - * laminae medullares thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] - * medullary layer of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] - * medullary layers of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] + * external medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] + * internal medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] + * laminae medullares thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] + * medullary layer of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] + * medullary layers of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014533 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0014633.md b/md/UBERON/33/UBERON_0014633.md index 482ee2c021..af443e8fe8 100644 --- a/md/UBERON/33/UBERON_0014633.md +++ b/md/UBERON/33/UBERON_0014633.md @@ -6,15 +6,15 @@ ## Synonyms - * substantia gelatinosa of lumbar spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_819[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * substantia gelatinosa of lumbar spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_819] + * substantia gelatinosa of lumbar spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_819, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * substantia gelatinosa of lumbar spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_819 ] ## Cross-references * NIF_GrossAnatomy:birnlex_819 * SCTID:314519000 - * UMLS:C0228648 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_819] - * UMLS:C1282211 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_819] + * UMLS:C0228648 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_819 ] + * UMLS:C1282211 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_819 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar spinal cord dorsal horn](../../UBERON/38/UBERON_0014638.md) and [substantia gelatinosa](../../UBERON/81/UBERON_0002181.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014633 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0014733.md b/md/UBERON/33/UBERON_0014733.md index 6e57dc0b8b..69e622368b 100644 --- a/md/UBERON/33/UBERON_0014733.md +++ b/md/UBERON/33/UBERON_0014733.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014733 * *Label* = dorsal ventricular ridge of pallium - * *Definition* = Central region of the telencephalon, located in the pallium. Found in reptiles and birds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930] + * *Definition* = Central region of the telencephalon, located in the pallium. Found in reptiles and birds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930 ] ## Synonyms * dorsal ventricular ridge - * DVR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * DVR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014733 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0014933.md b/md/UBERON/33/UBERON_0014933.md index bb901e6e38..219cbedf10 100644 --- a/md/UBERON/33/UBERON_0014933.md +++ b/md/UBERON/33/UBERON_0014933.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014933 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_0015033.md b/md/UBERON/33/UBERON_0015033.md index aac287ca2a..4c463430de 100644 --- a/md/UBERON/33/UBERON_0015033.md +++ b/md/UBERON/33/UBERON_0015033.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015033 * *Label* = pedal digit 3 phalanx endochondral element - * *Definition* = A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 3 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 3 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 3 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 3 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit 3 phalanx cartilage element](../../UBERON/82/UBERON_0010682.md)or[pedal digit 3 phalanx pre-cartilage condensation](../../UBERON/82/UBERON_0010582.md)or[pedal digit 3 phalanx](../../UBERON/42/UBERON_0003642.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015033 + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000033.md b/md/UBERON/33/UBERON_2000033.md index e27148d03e..faf07fe295 100644 --- a/md/UBERON/33/UBERON_2000033.md +++ b/md/UBERON/33/UBERON_2000033.md @@ -6,9 +6,9 @@ ## Synonyms - * ICM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000033] - * intermediate cell mass of Oellacher [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000033] - * posterior intermediate cell mass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000033] + * ICM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000033 ] + * intermediate cell mass of Oellacher [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000033 ] + * posterior intermediate cell mass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000033 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000233.md b/md/UBERON/33/UBERON_2000233.md index c6782c2c9d..30ca76522b 100644 --- a/md/UBERON/33/UBERON_2000233.md +++ b/md/UBERON/33/UBERON_2000233.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000633.md b/md/UBERON/33/UBERON_2000633.md index e17c42f550..5ac075e878 100644 --- a/md/UBERON/33/UBERON_2000633.md +++ b/md/UBERON/33/UBERON_2000633.md @@ -6,8 +6,8 @@ ## Synonyms - * posterior tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000633] - * posterior tuberculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000633] + * posterior tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000633 ] + * posterior tuberculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000633 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000733.md b/md/UBERON/33/UBERON_2000733.md index 0afd3db6ac..a8d1e76c07 100644 --- a/md/UBERON/33/UBERON_2000733.md +++ b/md/UBERON/33/UBERON_2000733.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000733 * *Label* = somite 7 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 7 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000833.md b/md/UBERON/33/UBERON_2000833.md index 2937a2cec1..b604928b23 100644 --- a/md/UBERON/33/UBERON_2000833.md +++ b/md/UBERON/33/UBERON_2000833.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000833 * *Label* = sclerotome somite 22 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2000933.md b/md/UBERON/33/UBERON_2000933.md index 39001d88d1..9249c15537 100644 --- a/md/UBERON/33/UBERON_2000933.md +++ b/md/UBERON/33/UBERON_2000933.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000933 * *Label* = myotome somite 5 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001233.md b/md/UBERON/33/UBERON_2001233.md index 5a42a2f102..10de46e8e3 100644 --- a/md/UBERON/33/UBERON_2001233.md +++ b/md/UBERON/33/UBERON_2001233.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001233 * *Label* = hypobranchial 1 bone - * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. Develops in hypobranchial 1 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. Develops in hypobranchial 1 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001333.md b/md/UBERON/33/UBERON_2001333.md index e79431947a..ea38039ace 100644 --- a/md/UBERON/33/UBERON_2001333.md +++ b/md/UBERON/33/UBERON_2001333.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001333 * *Label* = sublingual dorsal and ventral fused - * *Definition* = Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001433.md b/md/UBERON/33/UBERON_2001433.md index 8dacdbfa8d..7ea5221c1d 100644 --- a/md/UBERON/33/UBERON_2001433.md +++ b/md/UBERON/33/UBERON_2001433.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001433 * *Label* = posterior sclerotic bone - * *Definition* = Sclerotic bone that is located posterior to the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sclerotic bone that is located posterior to the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001533.md b/md/UBERON/33/UBERON_2001533.md index 2ca84d8282..b0e8d3775a 100644 --- a/md/UBERON/33/UBERON_2001533.md +++ b/md/UBERON/33/UBERON_2001533.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001533 * *Label* = pharyngobranchial cartilage - * *Definition* = Paired cartilages that project medially from the medial tips of epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Paired cartilages that project medially from the medial tips of epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001633.md b/md/UBERON/33/UBERON_2001633.md index c04924b5f0..e27fd6c4d9 100644 --- a/md/UBERON/33/UBERON_2001633.md +++ b/md/UBERON/33/UBERON_2001633.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001633 * *Label* = entopterygoid tooth - * *Definition* = Tooth that is attached to the entopterygoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the entopterygoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * mesopterygoid tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001633] + * mesopterygoid tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001633 ] ## Cross-references @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [entopterygoid](../../UBERON/57/UBERON_2000657.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001733.md b/md/UBERON/33/UBERON_2001733.md index 53fdb5ed95..43179537ef 100644 --- a/md/UBERON/33/UBERON_2001733.md +++ b/md/UBERON/33/UBERON_2001733.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001733 * *Label* = mesethmoid ventral diverging lamella - * *Definition* = Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Reference: Weitzman 1962. ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001833.md b/md/UBERON/33/UBERON_2001833.md index 2e9bf8545b..e756cac9fa 100644 --- a/md/UBERON/33/UBERON_2001833.md +++ b/md/UBERON/33/UBERON_2001833.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001833 * *Label* = premaxillary tooth row - * *Definition* = Tooth row that is on the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is on the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2001933.md b/md/UBERON/33/UBERON_2001933.md index 364f8f5eee..4d9680ca6a 100644 --- a/md/UBERON/33/UBERON_2001933.md +++ b/md/UBERON/33/UBERON_2001933.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001933 * *Label* = sensory canal tubule - * *Definition* = Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2002033.md b/md/UBERON/33/UBERON_2002033.md index 452586be3d..7ad5a31224 100644 --- a/md/UBERON/33/UBERON_2002033.md +++ b/md/UBERON/33/UBERON_2002033.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002033 * *Label* = prootic-pterosphenoid joint - * *Definition* = Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [prootic bone](../../UBERON/46/UBERON_0004746.md) and [core#connects](../../ts/core#connects.md) some [pterosphenoid](../../UBERON/19/UBERON_2000419.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2002133.md b/md/UBERON/33/UBERON_2002133.md index a271c93b87..4e9cffde8b 100644 --- a/md/UBERON/33/UBERON_2002133.md +++ b/md/UBERON/33/UBERON_2002133.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002133 * *Label* = dorsal organ - * *Definition* = Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Dorsal organ is a structure found in apteronotid gymnotiform fishes. Definition reference: Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical electric fish (Osteichthyes: Gymnotiformes) from the Upper Miocene of Bolivia. Journal of Vertebrate Paleontology 27:17-25. @@ -31,7 +31,9 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_2005233.md b/md/UBERON/33/UBERON_2005233.md index ca739e65bc..bb009b6792 100644 --- a/md/UBERON/33/UBERON_2005233.md +++ b/md/UBERON/33/UBERON_2005233.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005233 * *Label* = obsolete CiD - * *Definition* = A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-010807-17] + * *Definition* = A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-010807-17 ] * *Comment* = incorrectly generalized to teleosts ## Synonyms - * circumferential descending interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005233] - * V2a interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005233] + * circumferential descending interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005233 ] + * V2a interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005233 ] ## Cross-references @@ -30,8 +30,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/33/UBERON_2007033.md b/md/UBERON/33/UBERON_2007033.md index fe1cb5c1b3..5f5d7e44ba 100644 --- a/md/UBERON/33/UBERON_2007033.md +++ b/md/UBERON/33/UBERON_2007033.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_3000333.md b/md/UBERON/33/UBERON_3000333.md index 5359bb55dc..f464c513b0 100644 --- a/md/UBERON/33/UBERON_3000333.md +++ b/md/UBERON/33/UBERON_3000333.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_3000433.md b/md/UBERON/33/UBERON_3000433.md index e9fd0be342..2aa50d4e78 100644 --- a/md/UBERON/33/UBERON_3000433.md +++ b/md/UBERON/33/UBERON_3000433.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_3000833.md b/md/UBERON/33/UBERON_3000833.md index 090139f9b7..6d737dac45 100644 --- a/md/UBERON/33/UBERON_3000833.md +++ b/md/UBERON/33/UBERON_3000833.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000833 * *Label* = sinus dorsalis - * *Definition* = Notch or indentation between the anterior and posterior rami of the cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Notch or indentation between the anterior and posterior rami of the cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_3010333.md b/md/UBERON/33/UBERON_3010333.md index ccd1283600..8e442b3565 100644 --- a/md/UBERON/33/UBERON_3010333.md +++ b/md/UBERON/33/UBERON_3010333.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/33/UBERON_3010633.md b/md/UBERON/33/UBERON_3010633.md index e061d0b4ac..1f45a3d25b 100644 --- a/md/UBERON/33/UBERON_3010633.md +++ b/md/UBERON/33/UBERON_3010633.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010633 * *Label* = obsolete flask cell - * *Definition* = Type of cell that appears in epidermis during metamorphosis and is rich in mitochondria. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Type of cell that appears in epidermis during metamorphosis and is rich in mitochondria. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] * *Comment* = replaced by CL_0007023 once cl is released. ## Synonyms @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/33/UBERON_4200033.md b/md/UBERON/33/UBERON_4200033.md index 114e05f1f3..442582ddf9 100644 --- a/md/UBERON/33/UBERON_4200033.md +++ b/md/UBERON/33/UBERON_4200033.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_4200133.md b/md/UBERON/33/UBERON_4200133.md index ceb797e266..05dbb039f3 100644 --- a/md/UBERON/33/UBERON_4200133.md +++ b/md/UBERON/33/UBERON_4200133.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/33/UBERON_4300033.md b/md/UBERON/33/UBERON_4300033.md index ea1320f2fd..3ad4d0cab7 100644 --- a/md/UBERON/33/UBERON_4300033.md +++ b/md/UBERON/33/UBERON_4300033.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0000434.md b/md/UBERON/34/UBERON_0000434.md index c64cbe8d1e..91de08b475 100644 --- a/md/UBERON/34/UBERON_0000434.md +++ b/md/UBERON/34/UBERON_0000434.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000434 * *Label* = anterior paraventricular nucleus of thalamus - * *Definition* = The anterior of the two nuclei paraventriculares thalami. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002455[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = The anterior of the two nuclei paraventriculares thalami. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002455, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * anterior paraventricular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002455] - * ventral paraventricular nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76962] - * Periventricular hypothalamic nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVa] - * anterior paraventricular nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002455] - * anterior paraventricular nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002455] - * anterior paraventricular nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PARA] - * anterior periventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVa] - * nucleus paraventricularis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002455] - * nucleus paraventricularis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002478] + * anterior paraventricular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002455 ] + * ventral paraventricular nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76962 ] + * Periventricular hypothalamic nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVa ] + * anterior paraventricular nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002455 ] + * anterior paraventricular nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002455 ] + * anterior paraventricular nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PARA ] + * anterior periventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVa ] + * nucleus paraventricularis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002455 ] + * nucleus paraventricularis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002478 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0000934.md b/md/UBERON/34/UBERON_0000934.md index b12e4daae8..1f5807638f 100644 --- a/md/UBERON/34/UBERON_0000934.md +++ b/md/UBERON/34/UBERON_0000934.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000934 * *Label* = ventral nerve cord - * *Definition* = The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002328[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007419[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WB:Paper00000938[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_nerve_cord] + * *Definition* = The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002328, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007419, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WB:Paper00000938, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_nerve_cord ] * *Comment* = The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects. ## Synonyms - * ventral cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007419] + * ventral cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007419 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001034.md b/md/UBERON/34/UBERON_0001034.md index 27442a3505..2f0c9b7299 100644 --- a/md/UBERON/34/UBERON_0001034.md +++ b/md/UBERON/34/UBERON_0001034.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001034 * *Label* = obsolete photoreceptor - * *Definition* = Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Photoreceptor] + * *Definition* = Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Photoreceptor ] ## Synonyms @@ -31,9 +31,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00005162 * *[consider](../../er/oboInOwl#consider.md)* = FMA:85613 * *[consider](../../er/oboInOwl#consider.md)* = GAID:778 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001034 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/34/UBERON_0001134.md b/md/UBERON/34/UBERON_0001134.md index de25606981..a0369cb6e7 100644 --- a/md/UBERON/34/UBERON_0001134.md +++ b/md/UBERON/34/UBERON_0001134.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001134 * *Label* = skeletal muscle tissue - * *Definition* = Muscle tissue that consists primarily of skeletal muscle fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/324] + * *Definition* = Muscle tissue that consists primarily of skeletal muscle fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/324 ] * *Comment* = TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle. ## Synonyms * skeletal muscle - * skeletal muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001103] - * somatic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001103] + * skeletal muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001103 ] + * somatic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001103 ] ## Cross-references * FMA:14069 * SCTID:426215008 - * UMLS:C0242692 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skeletal_Muscle_Tissue] + * UMLS:C0242692 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skeletal_Muscle_Tissue ] * Wikipedia:Skeletal_striated_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg * ncithesaurus:Skeletal_Muscle_Tissue @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [CL_0008002](../../CL/02/CL_0008002.md) and [muscle tissue](../../UBERON/85/UBERON_0002385.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = This result implies the following views in terms of evolutionary differentiation: (1) Arthropod striated muscle and vertebrate skeletal and cardiac muscles share a common ancestor. In other words, they did not evolve independently (...) (5) The divergence of vertebrate skeletal and cardiac muscles/vertebrate smooth muscle and nonmuscle is at least before that of vertebrates/arthropods. In other words, emergence of skeletal and cardiac musle type tissues preceded the vertebrate/arthropod divergence (ca. 700 MYA).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001234.md b/md/UBERON/34/UBERON_0001234.md index 0e3ce48f79..acceeb3671 100644 --- a/md/UBERON/34/UBERON_0001234.md +++ b/md/UBERON/34/UBERON_0001234.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001234 * *Label* = left adrenal gland - * *Definition* = An adrenal gland that is in the left side of the abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adrenal gland that is in the left side of the abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in humans, the left adrenal gland is semilunar shaped[WP] ## Synonyms - * glandula suprarenalis sinister [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula suprarenalis sinister [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * left suprarenal gland ## Cross-references @@ -16,7 +16,7 @@ * FMA:15630 * MA:0000718 * SCTID:281626000 - * UMLS:C0229560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Adrenal_Gland] + * UMLS:C0229560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Adrenal_Gland ] * ncithesaurus:Left_Adrenal_Gland ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adrenal gland](../../UBERON/69/UBERON_0002369.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001334.md b/md/UBERON/34/UBERON_0001334.md index 4bb399ad13..18bb6e7c3f 100644 --- a/md/UBERON/34/UBERON_0001334.md +++ b/md/UBERON/34/UBERON_0001334.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001334 * *Label* = female urethra - * *Definition* = In anatomy, the urethra (from Greek ??????? - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Female_urethra] + * *Definition* = In anatomy, the urethra (from Greek ??????? - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Female_urethra ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * urethra feminina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004088] - * urethra muliebris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004088] + * urethra feminina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004088 ] + * urethra muliebris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004088 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:19669 * MA:0002637 * SCTID:264469008 - * UMLS:C0458485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Female_Urethra] + * UMLS:C0458485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Female_Urethra ] * Wikipedia:Female_urethra * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png * ncithesaurus:Female_Urethra @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001434.md b/md/UBERON/34/UBERON_0001434.md index 00c9b3b390..7f4535474a 100644 --- a/md/UBERON/34/UBERON_0001434.md +++ b/md/UBERON/34/UBERON_0001434.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001434 * *Label* = skeletal system - * *Definition* = Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000027[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000027, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates ## Synonyms * skeleton system - * set of all bones and joints [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * Skelettsystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001486] + * set of all bones and joints [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * Skelettsystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001486 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0000018 * OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA * TAO:0000434 - * UMLS:C0037253 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skeletal_System] + * UMLS:C0037253 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skeletal_System ] * VHOG:0001254 * VSAO:0000027 * XAO:0003060 @@ -55,9 +55,10 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = By taking a holistic approach, integration of the evidence from molecular and developmental features of model organisms, the phylogenetic distribution in the 'new animal phylogeny' and the earliest fossilized remains of mineralized animal skeletons suggests independent origins of the skeleton at the phylum level.[debated][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = skeletal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001434 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000025 +## Usage + + ## External Comments diff --git a/md/UBERON/34/UBERON_0001534.md b/md/UBERON/34/UBERON_0001534.md index 497815bf87..07a72f2686 100644 --- a/md/UBERON/34/UBERON_0001534.md +++ b/md/UBERON/34/UBERON_0001534.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001534 * *Label* = right subclavian artery - * *Definition* = In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_artery] + * *Definition* = In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -17,7 +17,7 @@ * OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA * SCTID:244246000 - * UMLS:C0226261 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Subclavian_Artery] + * UMLS:C0226261 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Subclavian_Artery ] * Wikipedia:Subclavian_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png * ncithesaurus:Right_Subclavian_Artery @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001634.md b/md/UBERON/34/UBERON_0001634.md index 298c4af78f..ebada6dbb3 100644 --- a/md/UBERON/34/UBERON_0001634.md +++ b/md/UBERON/34/UBERON_0001634.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001634 * *Label* = mesencephalic artery - * *Definition* = The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12606281[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004173] + * *Definition* = The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12606281, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004173 ] * *Comment* = Editor notes: review this term, check taxon scope ## Synonyms - * MsA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001068[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * MsA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001068, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al. 2001.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Develops from the proximal portion of the primitive mesencephalic artery[ZFA:0001068, ZFIN:ZDB-PUB-010205-5]. * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from primitive mesencephalic artery (TAO:0001062)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001734.md b/md/UBERON/34/UBERON_0001734.md index cc36b6d857..99a299ab7c 100644 --- a/md/UBERON/34/UBERON_0001734.md +++ b/md/UBERON/34/UBERON_0001734.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001734 * *Label* = palatine uvula - * *Definition* = Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_uvula] + * *Definition* = Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_uvula ] * *Comment* = seeAlso - bifid uvula and cleft palate ## Synonyms * palatine uvula - * uvula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55022] + * uvula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55022 ] * uvula of palate - * uvula palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uvula palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_uvula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * uvula palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uvula palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_uvula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:1285 * MESH:A14.549.617.780.729 * SCTID:362082005 - * UMLS:C0042173 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Uvula] + * UMLS:C0042173 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Uvula ] * Wikipedia:Palatine_uvula * http://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg @@ -50,8 +50,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In a study of eight mammals a small underdeveloped uvula was found only in baboons - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001834.md b/md/UBERON/34/UBERON_0001834.md index f9e26e3478..a42e54a7ee 100644 --- a/md/UBERON/34/UBERON_0001834.md +++ b/md/UBERON/34/UBERON_0001834.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001834 * *Label* = upper lip - * *Definition* = Lip that covers the upper portion of the mouth.[TAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001970[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_lip] + * *Definition* = Lip that covers the upper portion of the mouth.[TAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001970, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_lip ] ## Synonyms - * upper jaw lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * labium superius oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_lip[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * upper jaw lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * labium superius oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_lip, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lip](../../UBERON/33/UBERON_0001833.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lip that covers the upper portion of the mouth.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003391 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0001934.md b/md/UBERON/34/UBERON_0001934.md index 6866831808..20973c27fd 100644 --- a/md/UBERON/34/UBERON_0001934.md +++ b/md/UBERON/34/UBERON_0001934.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001934 * *Label* = dorsomedial nucleus of hypothalamus - * *Definition* = The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsomedial_hypothalamic_nucleus] + * *Definition* = The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsomedial_hypothalamic_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,13 +11,13 @@ * dorsomedial hypothalamic nucleus * dorsomedial nucleus of dorsal hypothalamus * dorsomedial nucleus of intermediate hypothalamus - * DMH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1558[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsomedial nucleus hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:397] - * dorsomedial nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:397] - * nucleus dorsomedialis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:397[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsomedialis hypothalamicae intermediae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002474] - * nucleus dorsomedialis hypothalamicae intermediae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsomedial_hypothalamic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus hypothalamicus dorsomedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:397[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * DMH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1558, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsomedial nucleus hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:397 ] + * dorsomedial nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:397 ] + * nucleus dorsomedialis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:397, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsomedialis hypothalamicae intermediae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002474 ] + * nucleus dorsomedialis hypothalamicae intermediae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsomedial_hypothalamic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus hypothalamicus dorsomedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:397, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,9 +32,9 @@ * MA:0000838 * MESH:A08.186.211.730.385.357.352.270 * NIF_GrossAnatomy:birnlex_1558 - * NeuroNames:397 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1558] + * NeuroNames:397 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1558 ] * SCTID:369134003 - * UMLS:C0013055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1558] + * UMLS:C0013055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1558 ] * Wikipedia:Dorsomedial_hypothalamic_nucleus * http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002034.md b/md/UBERON/34/UBERON_0002034.md index fceac8e918..dc7503b215 100644 --- a/md/UBERON/34/UBERON_0002034.md +++ b/md/UBERON/34/UBERON_0002034.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002034 * *Label* = suprachiasmatic nucleus - * *Definition* = The suprachiasmatic nucleus, or nuclei, (SCN), a tiny region on the brain's midline in a shallow impression of the optic chiasm, is responsible for controlling endogenous circadian rhythms. The neuronal and hormonal activities it generates regulate many different body functions over a 24-hour period. The SCN, pine cone shaped and the size of a grain of rice, interacts with many other regions of the brain. It contains several cell types and several different peptides and neurotransmitters. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachiasmatic_nucleus] + * *Definition* = The suprachiasmatic nucleus, or nuclei, (SCN), a tiny region on the brain's midline in a shallow impression of the optic chiasm, is responsible for controlling endogenous circadian rhythms. The neuronal and hormonal activities it generates regulate many different body functions over a 24-hour period. The SCN, pine cone shaped and the size of a grain of rice, interacts with many other regions of the brain. It contains several cell types and several different peptides and neurotransmitters. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachiasmatic_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * suprachiasmatic nucleus of hypothalamus - * SCN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1325[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * SCh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1325[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * SCN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001822] - * nucleus suprachiasmaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachiasmatic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus suprachiasmaticus hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:384[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * suprachiasmatic nucleus (Spiegel-Zwieg) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:384] + * SCN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1325, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * SCh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1325, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * SCN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001822 ] + * nucleus suprachiasmaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachiasmatic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus suprachiasmaticus hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:384, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * suprachiasmatic nucleus (Spiegel-Zwieg) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:384 ] ## Cross-references @@ -31,12 +31,12 @@ * MA:0000843 * MESH:A08.186.211.730.385.357.342.625 * NIF_GrossAnatomy:birnlex_1325 - * NeuroNames:384 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1325] + * NeuroNames:384 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1325 ] * SCTID:369132004 * TAO:0000441 - * UMLS:C0038866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1325] - * UMLS:C0038866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Suprachiasmatic_Nucleus] - * UMLS:C1289559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1325] + * UMLS:C0038866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1325 ] + * UMLS:C0038866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Suprachiasmatic_Nucleus ] + * UMLS:C1289559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1325 ] * VHOG:0000036 * Wikipedia:Suprachiasmatic_nucleus * XAO:0004072 @@ -67,8 +67,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002134.md b/md/UBERON/34/UBERON_0002134.md index 90b3a3545d..bd8f30ecd9 100644 --- a/md/UBERON/34/UBERON_0002134.md +++ b/md/UBERON/34/UBERON_0002134.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002134 * *Label* = tricuspid valve - * *Definition* = Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tricuspid_valve] + * *Definition* = Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tricuspid_valve ] * *Comment* = AO notes: FMA part_ofs changed to connects ## Synonyms - * right atrioventricular valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7234] - * valva atrioventricularis dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7234[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * valvula tricuspidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tricuspid_valve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * right atrioventricular valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7234 ] + * valva atrioventricularis dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7234, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * valvula tricuspidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tricuspid_valve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA * RETIRED_EHDAA2:0002081 * SCTID:181288007 - * UMLS:C0040960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tricuspid_Valve] + * UMLS:C0040960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tricuspid_Valve ] * VHOG:0000816 * Wikipedia:Tricuspid_valve * galen:TricuspidValve @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrioventricular valve](../../UBERON/33/UBERON_0002133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow part of right atrium](../../UBERON/65/UBERON_0005965.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The three-segmented valve of the heart that keeps blood in the right ventricle from flowing back into the right atrium. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002234.md b/md/UBERON/34/UBERON_0002234.md index 97586f3993..d9bf7945a8 100644 --- a/md/UBERON/34/UBERON_0002234.md +++ b/md/UBERON/34/UBERON_0002234.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002234 * *Label* = proximal phalanx of manus - * *Definition* = A proximal phalanx that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001395] + * hand proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001395 ] * proximal manual phalanx - * proximal phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75816] + * proximal phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75816 ] * proximal phalanx of fore digit * proximal phalanx of hand * proximal phalanx of manual digit @@ -20,7 +20,7 @@ * MA:0001395 * SCTID:181986000 * SCTID:361325003 - * UMLS:C0730117 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Proximal_Phalanx_of_Hand] + * UMLS:C0730117 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Proximal_Phalanx_of_Hand ] * ncithesaurus:Proximal_Phalanx_of_Hand ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002334.md b/md/UBERON/34/UBERON_0002334.md index 78e0709853..1402a6d76c 100644 --- a/md/UBERON/34/UBERON_0002334.md +++ b/md/UBERON/34/UBERON_0002334.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002334 * *Label* = submandibular duct - * *Definition* = The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum lingu. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_duct] + * *Definition* = The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum lingu. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_duct ] * *Comment* = AO notes: FMA also has 'main submandibular duct' (FMA:59899) ## Synonyms - * Wharton's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59899[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * ductus submandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004556] - * ductus submaxillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Wharton's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59899, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * ductus submandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004556 ] + * ductus submaxillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * submandibular salivary duct - * submaxillar gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004556] + * submaxillar gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004556 ] * submaxillary duct ## Cross-references @@ -21,7 +21,7 @@ * FMA:86266 * MA:0002698 * SCTID:181237009 - * UMLS:C0227472 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submandibular_Duct] + * UMLS:C0227472 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submandibular_Duct ] * Wikipedia:Submandibular_duct * http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002434.md b/md/UBERON/34/UBERON_0002434.md index 91fe3cfe91..8d4fc1835c 100644 --- a/md/UBERON/34/UBERON_0002434.md +++ b/md/UBERON/34/UBERON_0002434.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002434 * *Label* = pituitary stalk - * *Definition* = The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pituitary_stalk] + * *Definition* = The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pituitary_stalk ] ## Synonyms - * hypophyseal stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009463] - * infundibular stem of neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * infundibulum (lobus posterior) (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000858[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001199] - * infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001199] - * infundibulum hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * infundibulum of neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * infundibulum of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * infundibulum of posterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * neurohypophysis infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * tuberal part of hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74635] - * THP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_912[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * infundibular stem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009463] - * hypophysial stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001199] - * infundibulum neurohypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pituitary_stalk[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * infundibulum of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001199] - * pars tuberalis (hypophysis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:408[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuberal part of the hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:408] + * hypophyseal stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009463 ] + * infundibular stem of neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * infundibulum (lobus posterior) (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000858, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001199 ] + * infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001199 ] + * infundibulum hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * infundibulum of neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * infundibulum of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * infundibulum of posterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * neurohypophysis infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * tuberal part of hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74635 ] + * THP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_912, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * infundibular stem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009463 ] + * hypophysial stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001199 ] + * infundibulum neurohypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pituitary_stalk, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * infundibulum of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001199 ] + * pars tuberalis (hypophysis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:408, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuberal part of the hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:408 ] ## Cross-references @@ -37,11 +37,11 @@ * FMA:74635 * MA:0000858 * NIF_GrossAnatomy:birnlex_912 - * NeuroNames:408 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_912] + * NeuroNames:408 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_912 ] * SCTID:245529009 * TAO:0001199 - * UMLS:C0447641 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_912] - * UMLS:C0751440 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pituitary_Stalk] + * UMLS:C0447641 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_912 ] + * UMLS:C0751440 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pituitary_Stalk ] * VHOG:0000245 * Wikipedia:Pituitary_stalk * XAO:0004210 @@ -73,8 +73,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003014 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002534.md b/md/UBERON/34/UBERON_0002534.md index 17a428d030..b1dd991394 100644 --- a/md/UBERON/34/UBERON_0002534.md +++ b/md/UBERON/34/UBERON_0002534.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002534 * *Label* = paired fin - * *Definition* = Fin that is one of a pair located ventrally on the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fin that is one of a pair located ventrally on the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * artioptrygie@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000111] - * nageoire paire@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000111] - * pelvic/pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * artioptrygie@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000111 ] + * nageoire paire@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000111 ] + * pelvic/pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002634.md b/md/UBERON/34/UBERON_0002634.md index 71e8482919..462b228e8a 100644 --- a/md/UBERON/34/UBERON_0002634.md +++ b/md/UBERON/34/UBERON_0002634.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002634 * *Label* = anterior nucleus of hypothalamus - * *Definition* = The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_hypothalamic_nucleus] + * *Definition* = The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_hypothalamic_nucleus ] ## Synonyms - * anterior hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62319] - * anterior hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62319] - * area hypothalamica rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62319[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fundamental gray substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62319] - * parvocellular nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62319] - * AH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1226[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Amygdalo-hippocampal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHA] - * anterior hypothalamic area anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHA] - * anterior hypothalamic area, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHA] - * anterior nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:386] - * nucleus anterior hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002450] - * nucleus anterior hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_hypothalamic_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus hypothalamicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:386[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvocellular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVH] + * anterior hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62319 ] + * anterior hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62319 ] + * area hypothalamica rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62319, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fundamental gray substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62319 ] + * parvocellular nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62319 ] + * AH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1226, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Amygdalo-hippocampal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHA ] + * anterior hypothalamic area anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHA ] + * anterior hypothalamic area, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHA ] + * anterior nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:386 ] + * nucleus anterior hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002450 ] + * nucleus anterior hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_hypothalamic_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus hypothalamicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:386, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvocellular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVH ] ## Cross-references @@ -37,9 +37,9 @@ * GAID:642 * MESH:A08.186.211.730.385.357.342.063 * NIF_GrossAnatomy:birnlex_1226 - * NeuroNames:386 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1226] + * NeuroNames:386 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1226 ] * SCTID:369133009 - * UMLS:C0020653 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1226] + * UMLS:C0020653 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1226 ] * Wikipedia:Anterior_hypothalamic_nucleus * http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -61,8 +61,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002734.md b/md/UBERON/34/UBERON_0002734.md index 1ea39837ad..d3d2e3bf29 100644 --- a/md/UBERON/34/UBERON_0002734.md +++ b/md/UBERON/34/UBERON_0002734.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002734 * *Label* = superior temporal sulcus - * *Definition* = The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_temporal_sulcus] + * *Definition* = The superior temporal sulcus is the sulcus separating the superior temporal gyrus from the middle temporal gyrus in the temporal lobe of the brain. The superior temporal sulcus is the first sulcus inferior to the lateral fissure. It is involved in the perception of where others are gazing and is thus important in determining where others' emotions are being directed. It is also involved in the perception of biological motion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_temporal_sulcus ] ## Synonyms - * parallel sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83783] - * sulcus t1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83783] - * superior temporal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83783] - * sts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1534[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus temporalis primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:129[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus temporalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:129[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * parallel sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83783 ] + * sulcus t1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83783 ] + * superior temporal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83783 ] + * sts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1534, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus temporalis primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:129, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus temporalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:129, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * BM:Tel-Cx-STS * FMA:83783 * NIF_GrossAnatomy:birnlex_1534 - * NeuroNames:129 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1534] + * NeuroNames:129 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1534 ] * SCTID:279344005 - * UMLS:C0228237 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1534] - * UMLS:C0228237 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Temporal_Sulcus] + * UMLS:C0228237 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1534 ] + * UMLS:C0228237 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Temporal_Sulcus ] * Wikipedia:Superior_temporal_sulcus * ncithesaurus:Superior_Temporal_Sulcus @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002834.md b/md/UBERON/34/UBERON_0002834.md index 3f5af1084f..d979a56bfd 100644 --- a/md/UBERON/34/UBERON_0002834.md +++ b/md/UBERON/34/UBERON_0002834.md @@ -6,15 +6,15 @@ ## Synonyms - * cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6005] - * cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6005] + * cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6005 ] + * cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6005 ] ## Cross-references * FMA:6005 * NIF_GrossAnatomy:birnlex_2599 * SCTID:278325008 - * UMLS:C0457466 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2599] + * UMLS:C0457466 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2599 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0002934.md b/md/UBERON/34/UBERON_0002934.md index 0384a06b52..7ea9099ce1 100644 --- a/md/UBERON/34/UBERON_0002934.md +++ b/md/UBERON/34/UBERON_0002934.md @@ -6,20 +6,20 @@ ## Synonyms - * ventral nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * ventral oculomotor cell column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72422] - * V3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_713[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus nervi oculomotorii ventrolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:496[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi oculomotorii, pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:496[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visual area V3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V3] + * ventral nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * ventral oculomotor cell column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72422 ] + * V3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_713, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus nervi oculomotorii ventrolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:496, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi oculomotorii, pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:496, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visual area V3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V3 ] ## Cross-references * BAMS:V3 * FMA:72422 * NIF_GrossAnatomy:birnlex_713 - * NeuroNames:496 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_713] - * UMLS:C0175380 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_713] + * NeuroNames:496 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_713 ] + * UMLS:C0175380 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_713 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003034.md b/md/UBERON/34/UBERON_0003034.md index bc99cb8531..d8a48677c0 100644 --- a/md/UBERON/34/UBERON_0003034.md +++ b/md/UBERON/34/UBERON_0003034.md @@ -6,12 +6,12 @@ ## Synonyms - * nucleus centralis dorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_956] - * nucleus centralis superior lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_956] - * nucleus centralis superior lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_956] - * nucleus circularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_956] - * CD [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_956[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * supraoptic nucleus, accessory supraoptic group, nucleus circularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NC] + * nucleus centralis dorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_956 ] + * nucleus centralis superior lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_956 ] + * nucleus centralis superior lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_956 ] + * nucleus circularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_956 ] + * CD [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_956, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * supraoptic nucleus, accessory supraoptic group, nucleus circularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NC ] ## Cross-references @@ -21,8 +21,8 @@ * BAMS:SuC * FMA:62169 * NIF_GrossAnatomy:birnlex_956 - * NeuroNames:319 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_956] - * UMLS:C0752053 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_956] + * NeuroNames:319 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_956 ] + * UMLS:C0752053 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_956 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003134.md b/md/UBERON/34/UBERON_0003134.md index 1d4f6a27cb..f6a87b641e 100644 --- a/md/UBERON/34/UBERON_0003134.md +++ b/md/UBERON/34/UBERON_0003134.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003134 * *Label* = female reproductive organ - * *Definition* = A female organ involved in reproduction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:xp] + * *Definition* = A female organ involved in reproduction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:xp ] ## Synonyms - * female organism reproductive organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism reproductive structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism reproductive system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism sex organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female reproductive gland/organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000544] + * female organism reproductive organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism reproductive structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism reproductive system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism sex organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female reproductive gland/organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000544 ] * female reproductive system organ * female sex organ - * reproductive organ of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive structure of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system organ of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sex organ of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * reproductive organ of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive structure of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system organ of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sex organ of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [reproductive organ](../../UBERON/33/UBERON_0003133.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003234.md b/md/UBERON/34/UBERON_0003234.md index c588153b2a..e7b83c23ca 100644 --- a/md/UBERON/34/UBERON_0003234.md +++ b/md/UBERON/34/UBERON_0003234.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003234 * *Label* = extensor pollicis longus muscle - * *Definition* = The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_pollicis_longus_muscle] + * *Definition* = The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_pollicis_longus_muscle ] ## Synonyms - * extensor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38521] - * extensor pollicis longis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_pollicis_longus_muscle] - * musculus extensor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_pollicis_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * extensor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38521 ] + * extensor pollicis longis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_pollicis_longus_muscle ] + * musculus extensor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_pollicis_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003334.md b/md/UBERON/34/UBERON_0003334.md index 7ae2069ab6..124522e6aa 100644 --- a/md/UBERON/34/UBERON_0003334.md +++ b/md/UBERON/34/UBERON_0003334.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003334 * *Label* = serosa of rectum - * *Definition* = A serous membrane that is part of a rectum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a rectum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * rectal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15039] - * rectum serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectum serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral peritoneum of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15039] + * rectal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15039 ] + * rectum serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectum serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral peritoneum of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15039 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003434.md b/md/UBERON/34/UBERON_0003434.md index 8ac9c3a6b0..32f868046b 100644 --- a/md/UBERON/34/UBERON_0003434.md +++ b/md/UBERON/34/UBERON_0003434.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003434 * *Label* = wrist nerve - * *Definition* = A nerve that is part of a wrist [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a wrist [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * carpal region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003534.md b/md/UBERON/34/UBERON_0003534.md index 4483a4fdf0..93ff0f5a2f 100644 --- a/md/UBERON/34/UBERON_0003534.md +++ b/md/UBERON/34/UBERON_0003534.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003534 * *Label* = tail skin - * *Definition* = A zone of skin that is part of a tail [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a tail [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * post-vent region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * post-vent region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003634.md b/md/UBERON/34/UBERON_0003634.md index 6f84055c1b..62e0a6244a 100644 --- a/md/UBERON/34/UBERON_0003634.md +++ b/md/UBERON/34/UBERON_0003634.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003634 * *Label* = pedal digit 4 - * *Definition* = 4th digit of the hind autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = 4th digit of the hind autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * 4th toe - * digit 4 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17469] - * digitus quartis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002352[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * digitus quartus [iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25052] - * foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000468] - * fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25052] - * fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25052] + * digit 4 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17469 ] + * digitus quartis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002352, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digitus quartus [iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25052 ] + * foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000468 ] + * fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25052 ] + * fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25052 ] * hind digit 4 - * hind digit IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010656] - * hind limb digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind digit IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010656 ] + * hind limb digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit IV - * toe 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002052] - * foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * digitus quartus (IV) pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002352] + * toe 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002052 ] + * foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * digitus quartus (IV) pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002352 ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:25052 * MA:0000468 * SCTID:362826006 - * UMLS:C1708085 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_4] + * UMLS:C1708085 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_4 ] * ncithesaurus:Foot_Digit_4 ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003834.md b/md/UBERON/34/UBERON_0003834.md index e163bca0fc..27e6ee27bc 100644 --- a/md/UBERON/34/UBERON_0003834.md +++ b/md/UBERON/34/UBERON_0003834.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003834 * *Label* = thoracic segment blood vessel - * *Definition* = A blood vessel that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper body blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000558] + * blood vessel of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper body blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000558 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0003934.md b/md/UBERON/34/UBERON_0003934.md index 649e2dd56e..d91a732cc4 100644 --- a/md/UBERON/34/UBERON_0003934.md +++ b/md/UBERON/34/UBERON_0003934.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003934 * *Label* = mesenchyme pectoral fin - * *Definition* = Mesenchyme that is part of a pectoral fin [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pectoral fin [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of pectoral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral fin mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of pectoral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral fin mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesenchyme that is part of the pectoral fin.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004034.md b/md/UBERON/34/UBERON_0004034.md index 786ecb2c5e..4ab1a1d10e 100644 --- a/md/UBERON/34/UBERON_0004034.md +++ b/md/UBERON/34/UBERON_0004034.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004034 * *Label* = cutaneous microfibril - * *Definition* = the fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008419] + * *Definition* = the fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008419 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004134.md b/md/UBERON/34/UBERON_0004134.md index c5e1c35d37..e5f705dcac 100644 --- a/md/UBERON/34/UBERON_0004134.md +++ b/md/UBERON/34/UBERON_0004134.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004134 * *Label* = proximal tubule - * *Definition* = In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072014] + * *Definition* = In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072014 ] * *Comment* = todo - ensure definition works across species. ## Synonyms - * kidney proximal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002611] - * proximal kidney tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A05.810.453.736.560.570] + * kidney proximal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002611 ] + * proximal kidney tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A05.810.453.736.560.570 ] * renal proximal tubule ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004234.md b/md/UBERON/34/UBERON_0004234.md index 75b5552f25..e2f2d878d0 100644 --- a/md/UBERON/34/UBERON_0004234.md +++ b/md/UBERON/34/UBERON_0004234.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004234 * *Label* = iris smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a iris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: see notes for muscle of iris. ## Synonyms - * involuntary muscle of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * iridial smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * iris involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * iris non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * iris smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * iridial smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * iris involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * iris non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * iris smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004334.md b/md/UBERON/34/UBERON_0004334.md index 4e5eed1cba..03dc8467aa 100644 --- a/md/UBERON/34/UBERON_0004334.md +++ b/md/UBERON/34/UBERON_0004334.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004334 * *Label* = proximal phalanx of pedal digit 3 - * *Definition* = A proximal phalanx that is part of a pedal digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd toe proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 3rd toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 3rd toe proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 3rd toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * proximal phalanx of the 3rd toe - * proximal phalanx of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32619] - * proximal phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32619] - * third proximal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32619] + * proximal phalanx of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32619 ] + * proximal phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32619 ] + * third proximal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32619 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004434.md b/md/UBERON/34/UBERON_0004434.md index a6c196a12e..144b043fda 100644 --- a/md/UBERON/34/UBERON_0004434.md +++ b/md/UBERON/34/UBERON_0004434.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004434 * *Label* = proximal epiphysis of distal phalanx of manual digit 4 - * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of distal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529] - * basal epiphysis of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529] - * base of distal phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529] - * base of distal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529] - * base of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529] - * proximal epiphysis of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37529[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of distal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529 ] + * basal epiphysis of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529 ] + * base of distal phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529 ] + * base of distal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529 ] + * base of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529 ] + * proximal epiphysis of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37529, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 4](../../UBERON/13/UBERON_0004313.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004534.md b/md/UBERON/34/UBERON_0004534.md index f02d751d80..9d175ea309 100644 --- a/md/UBERON/34/UBERON_0004534.md +++ b/md/UBERON/34/UBERON_0004534.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004534 * *Label* = right testicle - * *Definition* = A testis that is in the right side of the genitalia [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A testis that is in the right side of the genitalia [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001747] + * right testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001747 ] ## Cross-references @@ -15,7 +15,7 @@ * MA:0001747 * OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA * SCTID:367719007 - * UMLS:C0227997 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Testis] + * UMLS:C0227997 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Testis ] * ncithesaurus:Right_Testis ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [reproductive system](../../UBERON/90/UBERON_0000990.md) and [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004634.md b/md/UBERON/34/UBERON_0004634.md index a7dc72bcad..2571e432a8 100644 --- a/md/UBERON/34/UBERON_0004634.md +++ b/md/UBERON/34/UBERON_0004634.md @@ -7,9 +7,9 @@ ## Synonyms - * T10 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10037] - * Tenth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10037] - * tenth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10037] + * T10 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10037 ] + * Tenth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10037 ] + * tenth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10037 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:10037 * MA:0001447 * SCTID:181838008 - * UMLS:C0459955 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T10_Vertebra] + * UMLS:C0459955 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T10_Vertebra ] * ncithesaurus:T10_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004734.md b/md/UBERON/34/UBERON_0004734.md index 9d30560896..23e010bb2f 100644 --- a/md/UBERON/34/UBERON_0004734.md +++ b/md/UBERON/34/UBERON_0004734.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004734 * *Label* = gastrula - * *Definition* = Organism at the gastrula stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrula[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trilaminar_blastocyst] + * *Definition* = Organism at the gastrula stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrula, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trilaminar_blastocyst ] * *Comment* = We explicitly merge the NCITA terms here ## Synonyms - * gastrula embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000060] - * blastocystis trilaminaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tri-laminar disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tri-laminar disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar blastocyst [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar blastoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * trilaminar germ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * gastrula embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000060 ] + * blastocystis trilaminaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tri-laminar disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tri-laminar disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar blastocyst [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar blastoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * trilaminar germ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -26,8 +26,8 @@ * GAID:1302 * MESH:A16.254.412 * MIAA:0000179 - * UMLS:C0017199 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrula] - * UMLS:C1284022 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trilaminar_Embryonic_Disc] + * UMLS:C0017199 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrula ] + * UMLS:C1284022 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trilaminar_Embryonic_Disc ] * Wikipedia:Gastrula * Wikipedia:Trilaminar_blastocyst * ncithesaurus:Gastrula @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [gastrula stage](../../UBERON/09/UBERON_0000109.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007012 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004834.md b/md/UBERON/34/UBERON_0004834.md index 7741089f2e..55a8bc03b2 100644 --- a/md/UBERON/34/UBERON_0004834.md +++ b/md/UBERON/34/UBERON_0004834.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004834 * *Label* = hepatic duct smooth muscle - * *Definition* = A smooth muscle tissue that is part of a hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A smooth muscle tissue that is part of a hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hepatic duct](../../UBERON/71/UBERON_0005171.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0004934.md b/md/UBERON/34/UBERON_0004934.md index 08a2acd1dc..22ccce7c66 100644 --- a/md/UBERON/34/UBERON_0004934.md +++ b/md/UBERON/34/UBERON_0004934.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004934 * *Label* = submucosa of body of stomach - * *Definition* = A submucosa that is part of a body of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a body of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * body of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * corpus gastricum (ventriculare) submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric body submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach body submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of corpus gastricum (ventriculare) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of gastric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of stomach body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * body of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * corpus gastricum (ventriculare) submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric body submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach body submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of corpus gastricum (ventriculare) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of gastric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of stomach body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [body of stomach](../../UBERON/61/UBERON_0001161.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005034.md b/md/UBERON/34/UBERON_0005034.md index b3be92f1c3..c28f8ec45f 100644 --- a/md/UBERON/34/UBERON_0005034.md +++ b/md/UBERON/34/UBERON_0005034.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005034 * *Label* = mucosa of right main bronchus - * *Definition* = A mucosa that is part of a right main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a right main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of right bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of right main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of right bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right main bronchial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13137] - * right main bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right main bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right main bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right main bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right principal bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right principal bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right principal bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right principal bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of right bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of right main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of right bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right main bronchial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13137 ] + * right main bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right main bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right main bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right main bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right principal bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right principal bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right principal bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right principal bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right main bronchus](../../UBERON/77/UBERON_0002177.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005134.md b/md/UBERON/34/UBERON_0005134.md index e0b2a13f9f..d5d6a05a79 100644 --- a/md/UBERON/34/UBERON_0005134.md +++ b/md/UBERON/34/UBERON_0005134.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005134 * *Label* = metanephric nephron epithelium - * *Definition* = The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072243] + * *Definition* = The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072243 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron epithelium](../../UBERON/11/UBERON_0004211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005234.md b/md/UBERON/34/UBERON_0005234.md index 5e4e2c05d1..713918aa87 100644 --- a/md/UBERON/34/UBERON_0005234.md +++ b/md/UBERON/34/UBERON_0005234.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005234 * *Label* = optic eminence ectoderm - * *Definition* = An ectoderm that is part of a optic eminence [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a optic eminence [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [optic eminence](../../UBERON/48/UBERON_0004348.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005334.md b/md/UBERON/34/UBERON_0005334.md index 2b95f52589..aac7a090a7 100644 --- a/md/UBERON/34/UBERON_0005334.md +++ b/md/UBERON/34/UBERON_0005334.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005334 * *Label* = oral lamina propria - * *Definition* = A lamina propria that is part of a mucosa of oral region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a mucosa of oral region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mucosa of oral region](../../UBERON/43/UBERON_0003343.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005434.md b/md/UBERON/34/UBERON_0005434.md index ca6c00d6ba..535ca05f99 100644 --- a/md/UBERON/34/UBERON_0005434.md +++ b/md/UBERON/34/UBERON_0005434.md @@ -6,10 +6,10 @@ ## Synonyms - * cervical region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24219] - * neck subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24219] - * region of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24219] - * subdivision of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24219] + * cervical region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24219 ] + * neck subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24219 ] + * region of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24219 ] + * subdivision of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24219 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0005734.md b/md/UBERON/34/UBERON_0005734.md index 9fccc675b5..ac29912f21 100644 --- a/md/UBERON/34/UBERON_0005734.md +++ b/md/UBERON/34/UBERON_0005734.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005734 * *Label* = tunica adventitia of blood vessel - * *Definition* = The outermost layer of a blood vessel, composed mainly of fibrous tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29] + * *Definition* = The outermost layer of a blood vessel, composed mainly of fibrous tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29 ] * *Comment* = TODO - note terminological problems. WP says tunica external layer of blood vessel. FMA says tunica externa = adventitia, and is FMA adventitia covers other kinds of vessels. Here we opt for a lengthier name that attempts to disambiguate. There is no precise FMA equivalent, as FMA has tunica externa of arteries, veins, genital ducts etc as siblings ## Synonyms - * adventitia externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29] - * tunica adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29] - * tunica adventitia of vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29] - * external coat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29] - * tunica adventitia vasorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica externa vasorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_externa_%28vessels%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adventitia externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29 ] + * tunica adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29 ] + * tunica adventitia of vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29 ] + * external coat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29 ] + * tunica adventitia vasorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica externa vasorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_externa_%28vessels%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * SCTID:61066005 - * UMLS:C0225342 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tunica_Adventitia] + * UMLS:C0225342 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tunica_Adventitia ] * Wikipedia:Tunica_externa_%28vessels%29 * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg * ncithesaurus:Tunica_Adventitia @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outermost layer of a blood vessel, surrounding the tunica media. It is mainly composed of collagen. The collagen serves to anchor the blood vessel to nearby organs, giving it stability[Wikipedia:Tunica_externa_%28vessels%29]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006134.md b/md/UBERON/34/UBERON_0006134.md index 92adf82511..9d56df5bff 100644 --- a/md/UBERON/34/UBERON_0006134.md +++ b/md/UBERON/34/UBERON_0006134.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006134 * *Label* = nerve fiber - * *Definition* = A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if it is myelinated) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system_fiber] + * *Definition* = A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if it is myelinated) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system_fiber ] ## Synonyms - * nerve fibre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5914] - * neurofibra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neurofibrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5914] - * Nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:nfi] - * neurofibra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nerve_fiber[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve fibre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5914 ] + * neurofibra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neurofibrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5914 ] + * Nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:nfi ] + * neurofibra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nerve_fiber, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [myelinated nerve fiber](../../UBERON/35/UBERON_0006135.md)or[unmyelinated nerve fiber](../../UBERON/36/UBERON_0006136.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = neurofibrous - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006234.md b/md/UBERON/34/UBERON_0006234.md index 78faa8cc7d..1400c514b0 100644 --- a/md/UBERON/34/UBERON_0006234.md +++ b/md/UBERON/34/UBERON_0006234.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [femur endochondral element](../../UBERON/52/UBERON_0015052.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006334.md b/md/UBERON/34/UBERON_0006334.md index bab339d1ee..4a5c12caf8 100644 --- a/md/UBERON/34/UBERON_0006334.md +++ b/md/UBERON/34/UBERON_0006334.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006334 * *Label* = posterior lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000944] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000944 ] * *Comment* = check XAO/AAO ## Synonyms - * pll [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000944] + * pll [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000944 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from posterior lateral line primordium (TAO:0001157)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006534.md b/md/UBERON/34/UBERON_0006534.md index 0f43896f75..f55119e992 100644 --- a/md/UBERON/34/UBERON_0006534.md +++ b/md/UBERON/34/UBERON_0006534.md @@ -7,13 +7,13 @@ ## Synonyms * convoluted tubule - * kidney convoluted tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001665] + * kidney convoluted tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001665 ] ## Cross-references * MA:0001665 * SCTID:361333002 - * UMLS:C1707510 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Convoluted_Tubule] + * UMLS:C1707510 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Convoluted_Tubule ] * ncithesaurus:Convoluted_Tubule ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006634.md b/md/UBERON/34/UBERON_0006634.md index 091adb58c8..bee8ee8ff3 100644 --- a/md/UBERON/34/UBERON_0006634.md +++ b/md/UBERON/34/UBERON_0006634.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006634 * *Label* = lingual vein - * *Definition* = The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins] + * *Definition* = The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins ] ## Synonyms - * deep lingual veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins] - * lingual vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins] - * ranine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins] - * ranine vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins] - * vena lingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * deep lingual veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins ] + * lingual vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins ] + * ranine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins ] + * ranine vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins ] + * vena lingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from the tongue and drains into the external jugular vein.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006834.md b/md/UBERON/34/UBERON_0006834.md index 14781609bb..c8f669ffd6 100644 --- a/md/UBERON/34/UBERON_0006834.md +++ b/md/UBERON/34/UBERON_0006834.md @@ -7,7 +7,7 @@ ## Synonyms - * uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004924[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004924, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [site_of](../../core#site/of/core#site_of.md) some [embryo development](../../GO/90/GO_0009790.md) and [subdivision of tube](../../UBERON/22/UBERON_0013522.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0006934.md b/md/UBERON/34/UBERON_0006934.md index b6c6f71808..524ae98271 100644 --- a/md/UBERON/34/UBERON_0006934.md +++ b/md/UBERON/34/UBERON_0006934.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006934 * *Label* = sensory epithelium - * *Definition* = Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000314] + * *Definition* = Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000314 ] * *Comment* = note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical ## Synonyms - * neuroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000314[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * neuroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000314, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_part](../../BFO/51/BFO_0000051.md) some [sensory epithelial cell](../../CL/98/CL_0000098.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0007134.md b/md/UBERON/34/UBERON_0007134.md index a72e2c90d1..7c4b99f078 100644 --- a/md/UBERON/34/UBERON_0007134.md +++ b/md/UBERON/34/UBERON_0007134.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007134 * *Label* = trunk ganglion - * *Definition* = Ganglion which is located in the trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ganglion which is located in the trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * body ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MAT:0000344] - * trunk ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001573[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * body ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MAT:0000344 ] + * trunk ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001573, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0007234.md b/md/UBERON/34/UBERON_0007234.md index 5bef3ec178..ca48fda0c9 100644 --- a/md/UBERON/34/UBERON_0007234.md +++ b/md/UBERON/34/UBERON_0007234.md @@ -6,7 +6,7 @@ ## Synonyms - * four-eight cell stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * four-eight cell stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0007334.md b/md/UBERON/34/UBERON_0007334.md index ed89a51b01..d6257d609a 100644 --- a/md/UBERON/34/UBERON_0007334.md +++ b/md/UBERON/34/UBERON_0007334.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007334 * *Label* = nidopallium - * *Definition* = The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. The region was renamed to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nidopallium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Avian_Brain_Nomenclature_Consortium] + * *Definition* = The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. The region was renamed to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nidopallium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Avian_Brain_Nomenclature_Consortium ] ## Synonyms - * nested pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003389] + * nested pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003389 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0007634.md b/md/UBERON/34/UBERON_0007634.md index 9476bf847d..45fe472591 100644 --- a/md/UBERON/34/UBERON_0007634.md +++ b/md/UBERON/34/UBERON_0007634.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007634 * *Label* = parabrachial nucleus - * *Definition* = A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Klliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Parabrachial_area] + * *Definition* = A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Klliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Parabrachial_area ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0007834.md b/md/UBERON/34/UBERON_0007834.md index 7589bfdbd9..5a811bce2f 100644 --- a/md/UBERON/34/UBERON_0007834.md +++ b/md/UBERON/34/UBERON_0007834.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007834 * *Label* = lumbar spinal cord ventral commissure - * *Definition* = A spinal cord ventral commissure that is part of a lumbar spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord ventral commissure that is part of a lumbar spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumbar spinal cord anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1326] + * lumbar spinal cord anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1326 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar spinal cord](../../UBERON/92/UBERON_0002792.md) and [spinal cord ventral commissure](../../UBERON/70/UBERON_0004170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0008334.md b/md/UBERON/34/UBERON_0008334.md index e9b0916c03..f0cfdef0b6 100644 --- a/md/UBERON/34/UBERON_0008334.md +++ b/md/UBERON/34/UBERON_0008334.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0008434.md b/md/UBERON/34/UBERON_0008434.md index acbc938565..1ddfaee298 100644 --- a/md/UBERON/34/UBERON_0008434.md +++ b/md/UBERON/34/UBERON_0008434.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008434 * *Label* = cervical vertebral arch - * *Definition* = A neural arch that is part of a cervical vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural arch that is part of a cervical vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arch of cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23893] + * arch of cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23893 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural arch](../../UBERON/61/UBERON_0003861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008434 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0008834.md b/md/UBERON/34/UBERON_0008834.md index 112e90f0da..679a649f69 100644 --- a/md/UBERON/34/UBERON_0008834.md +++ b/md/UBERON/34/UBERON_0008834.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008834 * *Label* = prostomium - * *Definition* = The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. It sometimes bears antennae and eyes. By feeding, it often functions like a kind of overlip. The shape and composition of prostomium are important for annelid systematics. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostomium] + * *Definition* = The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. It sometimes bears antennae and eyes. By feeding, it often functions like a kind of overlip. The shape and composition of prostomium are important for annelid systematics. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostomium ] ## Synonyms - * acron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004198] + * acron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004198 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0008934.md b/md/UBERON/34/UBERON_0008934.md index 6eddc12755..e666a46839 100644 --- a/md/UBERON/34/UBERON_0008934.md +++ b/md/UBERON/34/UBERON_0008934.md @@ -7,7 +7,7 @@ ## Synonyms - * supplemental somatosensory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SSs] + * supplemental somatosensory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SSs ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0009034.md b/md/UBERON/34/UBERON_0009034.md index 051a78d2c5..208f0c8d9d 100644 --- a/md/UBERON/34/UBERON_0009034.md +++ b/md/UBERON/34/UBERON_0009034.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009034 * *Label* = stomach region - * *Definition* = An organ part that is part of a stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ part that is part of a stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ part](../../UBERON/64/UBERON_0000064.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0009634.md b/md/UBERON/34/UBERON_0009634.md index 7fbff15151..76d68bbd16 100644 --- a/md/UBERON/34/UBERON_0009634.md +++ b/md/UBERON/34/UBERON_0009634.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009634 * *Label* = root of coccygeal nerve - * *Definition* = A spinal nerve root that is part of a coccygeal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal nerve root that is part of a coccygeal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * coccygeal neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18131] - * coccygeal spinal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18131] - * root of coccygeal spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18131] + * coccygeal neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18131 ] + * coccygeal spinal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18131 ] + * root of coccygeal spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18131 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [coccygeal nerve](../../UBERON/29/UBERON_0009629.md) and [spinal nerve root](../../UBERON/23/UBERON_0009623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0009734.md b/md/UBERON/34/UBERON_0009734.md index 25834b3ff8..52b26b0e72 100644 --- a/md/UBERON/34/UBERON_0009734.md +++ b/md/UBERON/34/UBERON_0009734.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009734 * *Label* = sublaminar layers S2 or S3 or S4 - * *Definition* = One of sublaminar layers S2, S3, or S4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S2, S3, or S4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md)or[sublaminar layer S3](../../UBERON/24/UBERON_0008924.md)or[sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0009834.md b/md/UBERON/34/UBERON_0009834.md index 64c6c75d0b..91957c1098 100644 --- a/md/UBERON/34/UBERON_0009834.md +++ b/md/UBERON/34/UBERON_0009834.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009834 * *Label* = dorsolateral prefrontal cortex - * *Definition* = The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsolateral_prefrontal_cortex] + * *Definition* = The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsolateral_prefrontal_cortex ] * *Comment* = check dorsolateral prefrontal neocortex ## Synonyms @@ -20,7 +20,7 @@ * [regional part of cerebral cortex](../../UBERON/19/UBERON_0002619.md) * [part_of](../../BFO/50/BFO_0000050.md) some [cerebral cortex](../../UBERON/56/UBERON_0000956.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [Brodmann (1909) area 46](../../UBERON/83/UBERON_0006483.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009834 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010034.md b/md/UBERON/34/UBERON_0010034.md index 6d5cf727f1..53025a1dab 100644 --- a/md/UBERON/34/UBERON_0010034.md +++ b/md/UBERON/34/UBERON_0010034.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010034 * *Label* = copula linguae - * *Definition* = A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Copula_linguae] + * *Definition* = A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Copula_linguae ] * *Comment* = add new term for Hypobranchial_eminence? ## Synonyms - * copula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004611] - * copula linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Copula_linguae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * copula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004611 ] + * copula linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Copula_linguae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010134.md b/md/UBERON/34/UBERON_0010134.md index 450723d4f0..ed719ac419 100644 --- a/md/UBERON/34/UBERON_0010134.md +++ b/md/UBERON/34/UBERON_0010134.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010234.md b/md/UBERON/34/UBERON_0010234.md index bcd19e599c..5fef3e1c40 100644 --- a/md/UBERON/34/UBERON_0010234.md +++ b/md/UBERON/34/UBERON_0010234.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010234 * *Label* = palatopharyngeus muscle - * *Definition* = The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatopharyngeus_muscle] + * *Definition* = The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatopharyngeus_muscle ] * *Comment* = Structure notes: It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae ## Synonyms * palatopharyngeal muscle - * palatopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46666] - * pharyngopalatinus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatopharyngeus_muscle] - * musculus palatopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatopharyngeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pharyngopalatinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatopharyngeus_muscle] + * palatopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46666 ] + * pharyngopalatinus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatopharyngeus_muscle ] + * musculus palatopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatopharyngeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pharyngopalatinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatopharyngeus_muscle ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010334.md b/md/UBERON/34/UBERON_0010334.md index b854c154cf..c9623769b4 100644 --- a/md/UBERON/34/UBERON_0010334.md +++ b/md/UBERON/34/UBERON_0010334.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010334 * *Label* = maxillary process mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a maxillary process mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [maxillary process mesenchyme](../../UBERON/26/UBERON_0009526.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010534.md b/md/UBERON/34/UBERON_0010534.md index a687c5782f..868818e6fe 100644 --- a/md/UBERON/34/UBERON_0010534.md +++ b/md/UBERON/34/UBERON_0010534.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010534 * *Label* = primitive mesonephric nephron - * *Definition* = Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005587] + * *Definition* = Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005587 ] ## Synonyms - * developing mesonephric nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005584] + * developing mesonephric nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005584 ] * primitive mesonephric nephron ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [primitive nephron](../../UBERON/32/UBERON_0010532.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0010934.md b/md/UBERON/34/UBERON_0010934.md index 3b4be65267..ac1cf579a3 100644 --- a/md/UBERON/34/UBERON_0010934.md +++ b/md/UBERON/34/UBERON_0010934.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010934 * *Label* = panniculus carnosus - * *Definition* = A layer of striated muscle deep to the panniculus adiposus[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Panniculus_carnosus] + * *Definition* = A layer of striated muscle deep to the panniculus adiposus[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Panniculus_carnosus ] * *Comment* = fine, flat muscles within the hypodermis. Their origin is in the deep fascia of bone and they insert into superficial skin. They act to raise hair, quills, feathers, etc. It is also used in "twitch" reflexes to shake off insects, etc.[Palaeos] ## Synonyms - * panniculus carnosus group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18189] + * panniculus carnosus group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18189 ] * panniculus ## Cross-references @@ -35,8 +35,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pannicular * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9261 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0011134.md b/md/UBERON/34/UBERON_0011134.md index cf285f958f..02cc024255 100644 --- a/md/UBERON/34/UBERON_0011134.md +++ b/md/UBERON/34/UBERON_0011134.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011134 * *Label* = nonsynovial joint - * *Definition* = Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7491] + * *Definition* = Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7491 ] ## Synonyms - * solid joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7491] + * solid joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7491 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0011234.md b/md/UBERON/34/UBERON_0011234.md index f7ad64d38d..ca44b297d1 100644 --- a/md/UBERON/34/UBERON_0011234.md +++ b/md/UBERON/34/UBERON_0011234.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0011534.md b/md/UBERON/34/UBERON_0011534.md index 992c38e5bf..bfc486e44a 100644 --- a/md/UBERON/34/UBERON_0011534.md +++ b/md/UBERON/34/UBERON_0011534.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0011634.md b/md/UBERON/34/UBERON_0011634.md index e0f16c7978..239955e48f 100644 --- a/md/UBERON/34/UBERON_0011634.md +++ b/md/UBERON/34/UBERON_0011634.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011634 * *Label* = ectopterygoid bone - * *Definition* = a palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryE.html] + * *Definition* = a palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryE.html ] * *Comment* = Provenance notes: taken from TAO but is present in tetrapods ## Synonyms - * ectopterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000656] + * ectopterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000656 ] ## Cross-references @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone.[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The ectopterygoid is often toothed.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0012134.md b/md/UBERON/34/UBERON_0012134.md index 4d3ef8f3d9..5e188f92c1 100644 --- a/md/UBERON/34/UBERON_0012134.md +++ b/md/UBERON/34/UBERON_0012134.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012134 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0012334.md b/md/UBERON/34/UBERON_0012334.md index d8e99480af..72ee3b54af 100644 --- a/md/UBERON/34/UBERON_0012334.md +++ b/md/UBERON/34/UBERON_0012334.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012334 * *Label* = navicular bursa - * *Definition* = A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/navicular+bursa] + * *Definition* = A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/navicular+bursa ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012334 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0013234.md b/md/UBERON/34/UBERON_0013234.md index f9d66c67ba..f0241be522 100644 --- a/md/UBERON/34/UBERON_0013234.md +++ b/md/UBERON/34/UBERON_0013234.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013234 * *Label* = violet gland - * *Definition* = The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Violet_gland] + * *Definition* = The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Violet_gland ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013234 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0013634.md b/md/UBERON/34/UBERON_0013634.md index 337f1529b0..49aec2ed4d 100644 --- a/md/UBERON/34/UBERON_0013634.md +++ b/md/UBERON/34/UBERON_0013634.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013634 * *Label* = intertrochanteric line - * *Definition* = The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur. The rough, variable ridge stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur. The iliofemoral ligament — the largest ligament of the human body — attaches above the line which also strengthen the capsule of the hip joint. The lower half, less prominent than the upper half, gives origin to the upper part of the Vastus medialis. Just like the intertrochanteric crest on the posterior side of the femural head, the intertrochanteric line mark the transition between the femural neck and shaft. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head. The fibers of the ischiocapsular ligament attaches both on the joint capsule and to the intertrochanteric line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertrochanteric_line] + * *Definition* = The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur. The rough, variable ridge stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur. The iliofemoral ligament — the largest ligament of the human body — attaches above the line which also strengthen the capsule of the hip joint. The lower half, less prominent than the upper half, gives origin to the upper part of the Vastus medialis. Just like the intertrochanteric crest on the posterior side of the femural head, the intertrochanteric line mark the transition between the femural neck and shaft. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head. The fibers of the ischiocapsular ligament attaches both on the joint capsule and to the intertrochanteric line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertrochanteric_line ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0013734.md b/md/UBERON/34/UBERON_0013734.md index 2c44ed0b80..b36b6bc8fc 100644 --- a/md/UBERON/34/UBERON_0013734.md +++ b/md/UBERON/34/UBERON_0013734.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013734 * *Label* = rostral linear nucleus - * *Definition* = Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat.[1] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144319] + * *Definition* = Nucleus of the medial ventral tegmental area, originally identified in the rat but also in cat, monkey and human, comprising an average of 7% volume of the VTA across the different species, with the largest being present in the cat.[1] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144319 ] * *Comment* = Editorial note: Brain Info does not list the linear nuclei as part of the ventral tegmental area but as a co-area of the midbrain tegmentum. Am assuming the rostral linear nucleus of the raphe is synonymous, but needs further review. (NIF) ## Synonyms - * RLi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16292327[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior linear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateroanterior hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LA] - * rostral linear nucleus of the raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21653852] + * RLi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16292327, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior linear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateroanterior hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LA ] + * rostral linear nucleus of the raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21653852 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0014534.md b/md/UBERON/34/UBERON_0014534.md index defe47fa9b..15015628cf 100644 --- a/md/UBERON/34/UBERON_0014534.md +++ b/md/UBERON/34/UBERON_0014534.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014534 * *Label* = external medullary lamina of thalamus - * *Definition* = A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] + * *Definition* = A medullary lamina that separates ventral and lateral thalamus from the subthalamus and thalamic reticular nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] ## Synonyms - * external medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62078] - * lamina medullaris lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris lateralis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * external medullary lamina of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:em] - * external medullary lamina of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:eml] + * external medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62078 ] + * lamina medullaris lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris lateralis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * external medullary lamina of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:em ] + * external medullary lamina of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:eml ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014534 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0014634.md b/md/UBERON/34/UBERON_0014634.md index ca2f1d5856..d601ba5c33 100644 --- a/md/UBERON/34/UBERON_0014634.md +++ b/md/UBERON/34/UBERON_0014634.md @@ -6,14 +6,14 @@ ## Synonyms - * ventral nerve root of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_958[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * anterior nerve root of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_958] + * ventral nerve root of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_958, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * anterior nerve root of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_958 ] ## Cross-references * NIF_GrossAnatomy:birnlex_958 * SCTID:174925008 - * UMLS:C1278750 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_958] + * UMLS:C1278750 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_958 ] ## Subsets @@ -22,19 +22,20 @@ * [ventral root of spinal cord](../../UBERON/60/UBERON_0002260.md) * [root of cervical nerve](../../UBERON/32/UBERON_0009632.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [ventral root of spinal cord](../../UBERON/60/UBERON_0002260.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014634 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0014734.md b/md/UBERON/34/UBERON_0014734.md index 94abf45358..2d79f9cc5b 100644 --- a/md/UBERON/34/UBERON_0014734.md +++ b/md/UBERON/34/UBERON_0014734.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014734 * *Label* = allocortex - * *Definition* = The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 ). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759] + * *Definition* = The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 ). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759 ] * *Comment* = The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] ## Synonyms - * allocortex (Stephan) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1598] - * heterogenetic cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1598] - * heterogenetic formations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1598] - * intercalated nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759] - * nucleus intercalatus (Staderini) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transitional cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * allocortex (Stephan) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1598 ] + * heterogenetic cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1598 ] + * heterogenetic formations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1598 ] + * intercalated nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759 ] + * nucleus intercalatus (Staderini) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transitional cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014734 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0014934.md b/md/UBERON/34/UBERON_0014934.md index 0448b51a93..31edc7ae93 100644 --- a/md/UBERON/34/UBERON_0014934.md +++ b/md/UBERON/34/UBERON_0014934.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014934 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_0015034.md b/md/UBERON/34/UBERON_0015034.md index c51160e8f8..6cf174f2d6 100644 --- a/md/UBERON/34/UBERON_0015034.md +++ b/md/UBERON/34/UBERON_0015034.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015034 * *Label* = pedal digit 4 phalanx endochondral element - * *Definition* = A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 4 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 4 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 4 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 4 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit 4 phalanx cartilage element](../../UBERON/83/UBERON_0010683.md)or[pedal digit 4 phalanx pre-cartilage condensation](../../UBERON/83/UBERON_0010583.md)or[pedal digit 4 phalanx](../../UBERON/62/UBERON_0003862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015034 + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000234.md b/md/UBERON/34/UBERON_2000234.md index 95bdd9f4fa..89c587f987 100644 --- a/md/UBERON/34/UBERON_2000234.md +++ b/md/UBERON/34/UBERON_2000234.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000234 * *Label* = macula neglecta - * *Definition* = Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000234] + * *Definition* = Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000234 ] ## Synonyms @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000534.md b/md/UBERON/34/UBERON_2000534.md index 3c06bfd2ba..f08b86a17a 100644 --- a/md/UBERON/34/UBERON_2000534.md +++ b/md/UBERON/34/UBERON_2000534.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral longitundinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000534] + * lateral longitundinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000534 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2000198 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000634.md b/md/UBERON/34/UBERON_2000634.md index 7bdc02c315..f34cdf30e1 100644 --- a/md/UBERON/34/UBERON_2000634.md +++ b/md/UBERON/34/UBERON_2000634.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000734.md b/md/UBERON/34/UBERON_2000734.md index e0402d018c..50ac7e49bf 100644 --- a/md/UBERON/34/UBERON_2000734.md +++ b/md/UBERON/34/UBERON_2000734.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000734 * *Label* = preural vertebra - * *Definition* = Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The term preural vertebra was created by Nybelin (1963) for those vertebrae supporting caudal procurrent rays. For additional information see Arratia and Schultze (1992). Their neural and hemal arches may or may not be fused to their corresponding autocentrum. Fusion or separation of certain neural and/or haemal arches of preural centra is characteristic or certain teleosts subgroup. The boundary between preural and ural region is determined by the bifurcation of the four or five blood vessels running inside the hemal arches of the preural vertebrae (primary caudal artery, two secondary arterial trunks, primary caudal vein, and secondary subvertebral vein) (for details see Schultze & Arratia, 1989). The bifurcation of the caudal artery and vein was proposed as a landmark to homologize preural centrum 1 throughout actinopterygians (Nybelin, 1963). ## Synonyms - * caudal fin vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000734] - * specialized centra/vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000734[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * caudal fin vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000734 ] + * specialized centra/vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000734, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000834.md b/md/UBERON/34/UBERON_2000834.md index 2d54efc42e..6696d6f5ff 100644 --- a/md/UBERON/34/UBERON_2000834.md +++ b/md/UBERON/34/UBERON_2000834.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000834 * *Label* = sclerotome somite 25 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2000934.md b/md/UBERON/34/UBERON_2000934.md index 4c07f3eb8e..be8aa08644 100644 --- a/md/UBERON/34/UBERON_2000934.md +++ b/md/UBERON/34/UBERON_2000934.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000934 * *Label* = myotome somite 8 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2001234.md b/md/UBERON/34/UBERON_2001234.md index 3524a9a977..b08ed27142 100644 --- a/md/UBERON/34/UBERON_2001234.md +++ b/md/UBERON/34/UBERON_2001234.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001234 * *Label* = hypobranchial 4 bone - * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. Develops in hypobranchial 4 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. Develops in hypobranchial 4 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2001534.md b/md/UBERON/34/UBERON_2001534.md index 9cde1a0c8b..e128931a65 100644 --- a/md/UBERON/34/UBERON_2001534.md +++ b/md/UBERON/34/UBERON_2001534.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001534 * *Label* = pharyngobranchial 3 cartilage - * *Definition* = Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2001634.md b/md/UBERON/34/UBERON_2001634.md index cacc5f4661..cac94c4115 100644 --- a/md/UBERON/34/UBERON_2001634.md +++ b/md/UBERON/34/UBERON_2001634.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001634 * *Label* = pharyngobranchial 1 cartilage - * *Definition* = Most anterior pharyngobranchial cartilage, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Most anterior pharyngobranchial cartilage, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 1 cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001634] + * infrapharyngobranchial 1 cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001634 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2001734.md b/md/UBERON/34/UBERON_2001734.md index cbd1be7fb9..408f0e91f1 100644 --- a/md/UBERON/34/UBERON_2001734.md +++ b/md/UBERON/34/UBERON_2001734.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001734 * *Label* = posterior process of basipterygium - * *Definition* = Process that is the posteriorly oriented, paired projection of the basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the posteriorly oriented, paired projection of the basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ischiac process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001734] - * ischiatic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001734] - * posterior pelvic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://hdl.handle.net/10088/11710] + * ischiac process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001734 ] + * ischiatic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001734 ] + * posterior pelvic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://hdl.handle.net/10088/11710 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2001934.md b/md/UBERON/34/UBERON_2001934.md index d8c92e39dd..abd47f9b09 100644 --- a/md/UBERON/34/UBERON_2001934.md +++ b/md/UBERON/34/UBERON_2001934.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001934 * *Label* = rostral plate - * *Definition* = Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2002034.md b/md/UBERON/34/UBERON_2002034.md index c289ede2e3..bc17624563 100644 --- a/md/UBERON/34/UBERON_2002034.md +++ b/md/UBERON/34/UBERON_2002034.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002034 * *Label* = prootic-exoccipital joint - * *Definition* = Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [exoccipital bone](../../UBERON/93/UBERON_0001693.md) and [core#connects](../../ts/core#connects.md) some [prootic bone](../../UBERON/46/UBERON_0004746.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2005034.md b/md/UBERON/34/UBERON_2005034.md index fbb44978b8..12ef33311c 100644 --- a/md/UBERON/34/UBERON_2005034.md +++ b/md/UBERON/34/UBERON_2005034.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005034 * *Label* = parachordal vessel - * *Definition* = Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PAV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005034] + * PAV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005034 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_2005234.md b/md/UBERON/34/UBERON_2005234.md index 0c05528b52..2a0f473938 100644 --- a/md/UBERON/34/UBERON_2005234.md +++ b/md/UBERON/34/UBERON_2005234.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005234 * *Label* = obsolete CoLA - * *Definition* = A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-010807-17] + * *Definition* = A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-010807-17 ] * *Comment* = incorrectly generalized to teleosts ## Synonyms - * commissural longitudinal ascending interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005234] + * commissural longitudinal ascending interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005234 ] ## Cross-references @@ -29,8 +29,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/34/UBERON_2007034.md b/md/UBERON/34/UBERON_2007034.md index f660bab10d..efa45ce05f 100644 --- a/md/UBERON/34/UBERON_2007034.md +++ b/md/UBERON/34/UBERON_2007034.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3000234.md b/md/UBERON/34/UBERON_3000234.md index 19c46384ce..c257f47262 100644 --- a/md/UBERON/34/UBERON_3000234.md +++ b/md/UBERON/34/UBERON_3000234.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000234 * *Label* = inferior prenasal cartilage - * *Definition* = Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Elongate cartilage that extends anteroventrally from the solum nasi to abut the ventral portion of the posterior aspect of the alary process of the premaxilla. It was first described by Wiedersheim in 1876. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * inferior prenasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000234] - * processus prenasalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000234] - * processus prenasalis inferior lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000234] + * inferior prenasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000234 ] + * processus prenasalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000234 ] + * processus prenasalis inferior lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000234 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3000434.md b/md/UBERON/34/UBERON_3000434.md index 4b0e9e2000..9689ee5a4b 100644 --- a/md/UBERON/34/UBERON_3000434.md +++ b/md/UBERON/34/UBERON_3000434.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3000634.md b/md/UBERON/34/UBERON_3000634.md index 40a805193e..bc5c5ce3fa 100644 --- a/md/UBERON/34/UBERON_3000634.md +++ b/md/UBERON/34/UBERON_3000634.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3000834.md b/md/UBERON/34/UBERON_3000834.md index 852f10e53f..57d1b0d6c6 100644 --- a/md/UBERON/34/UBERON_3000834.md +++ b/md/UBERON/34/UBERON_3000834.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000834 * *Label* = posterior lamina recurvata - * *Definition* = Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3000934.md b/md/UBERON/34/UBERON_3000934.md index 816a367539..ee918a0326 100644 --- a/md/UBERON/34/UBERON_3000934.md +++ b/md/UBERON/34/UBERON_3000934.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000934 * *Label* = foramen perforans tarsi - * *Definition* = Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_3010334.md b/md/UBERON/34/UBERON_3010334.md index cd77c2683d..22b3965c49 100644 --- a/md/UBERON/34/UBERON_3010334.md +++ b/md/UBERON/34/UBERON_3010334.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/34/UBERON_3010734.md b/md/UBERON/34/UBERON_3010734.md index 782ecfb6cb..2eb0cfdbf5 100644 --- a/md/UBERON/34/UBERON_3010734.md +++ b/md/UBERON/34/UBERON_3010734.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010734 * *Label* = M. flexor carpi ulnaris - * *Definition* = Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_4000134.md b/md/UBERON/34/UBERON_4000134.md index c633ea76fc..2a042e8d64 100644 --- a/md/UBERON/34/UBERON_4000134.md +++ b/md/UBERON/34/UBERON_4000134.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000134 * *Label* = ossified tendon - * *Definition* = Sesamoid that develops within a tendon, distal to an articulation or joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169] + * *Definition* = Sesamoid that develops within a tendon, distal to an articulation or joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169 ] ## Synonyms - * intratendonous ossification [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000134] + * intratendonous ossification [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000134 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_4200034.md b/md/UBERON/34/UBERON_4200034.md index d2e929d5aa..743900354a 100644 --- a/md/UBERON/34/UBERON_4200034.md +++ b/md/UBERON/34/UBERON_4200034.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_4200134.md b/md/UBERON/34/UBERON_4200134.md index 778ceaeff6..6c51331785 100644 --- a/md/UBERON/34/UBERON_4200134.md +++ b/md/UBERON/34/UBERON_4200134.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/34/UBERON_4300034.md b/md/UBERON/34/UBERON_4300034.md index dd78705209..da589649d3 100644 --- a/md/UBERON/34/UBERON_4300034.md +++ b/md/UBERON/34/UBERON_4300034.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300034 * *Label* = antorbital cartilage - * *Definition* = Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 92-5-104543-7] + * *Definition* = Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 92-5-104543-7 ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0000035.md b/md/UBERON/35/UBERON_0000035.md index ab3abb4cb1..349536e77c 100644 --- a/md/UBERON/35/UBERON_0000035.md +++ b/md/UBERON/35/UBERON_0000035.md @@ -7,9 +7,9 @@ ## Synonyms * folliculus ovaricus primarius - * ovary primary follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002907] + * ovary primary follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002907 ] * preantral follicle of ovary - * primary follicle of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18634] + * primary follicle of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18634 ] * primary egg follicle ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0000435.md b/md/UBERON/35/UBERON_0000435.md index 4e47bbfbf2..07a6974e7b 100644 --- a/md/UBERON/35/UBERON_0000435.md +++ b/md/UBERON/35/UBERON_0000435.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000435 * *Label* = lateral tuberal nucleus - * *Definition* = Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002481] + * *Definition* = Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002481 ] ## Synonyms - * Lateral tuberal hypothalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62336] - * Lateral tuberal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62336] - * lateral tuberal nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1206] - * LTu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1206[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei tuberales laterales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002481] - * nucleus tuberis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tuberis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tuberis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Lateral tuberal hypothalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62336 ] + * Lateral tuberal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62336 ] + * lateral tuberal nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1206 ] + * LTu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1206, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei tuberales laterales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002481 ] + * nucleus tuberis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tuberis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tuberis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,8 +25,8 @@ * EV:0100240 * FMA:62336 * NIF_GrossAnatomy:birnlex_1206 - * NeuroNames:428 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1206] - * UMLS:C0086527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1206] + * NeuroNames:428 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1206 ] + * UMLS:C0086527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1206 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0000935.md b/md/UBERON/35/UBERON_0000935.md index 1d9b22eea9..3af4fd5b9d 100644 --- a/md/UBERON/35/UBERON_0000935.md +++ b/md/UBERON/35/UBERON_0000935.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000935 * *Label* = anterior commissure - * *Definition* = A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002169] + * *Definition* = A bundle of myelinated nerve fibers passing transversely through the lamina terminalis and connecting symmetrical parts of the two cerebral hemispheres; it consists of a smaller anterior part (pars anterior commissurae anterioris) and a larger posterior part (pars posterior commissurae anterioris). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002169 ] ## Synonyms - * Commissura anterior cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:205[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anterior cerebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * Commissura anterior cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:205, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anterior cerebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * commissura rostralis - * ambiens gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AG] - * annectant gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AG] - * anterior commissural nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AC] - * commissura anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ambiens gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AG ] + * annectant gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AG ] + * anterior commissural nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AC ] + * commissura anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * commissura rostral - * paleocortical commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:205] - * precommisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_commisure] - * rostral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:205] + * paleocortical commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:205 ] + * precommisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_commisure ] + * rostral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:205 ] ## Cross-references @@ -36,8 +36,8 @@ * SCTID:279313001 * SCTID:369119009 * TAO:0001108 - * UMLS:C0152335 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1557] - * UMLS:C0152335 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Commissure] + * UMLS:C0152335 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1557 ] + * UMLS:C0152335 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Commissure ] * VHOG:0001558 * Wikipedia:Anterior_commissure * ZFA:0001108 @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001035.md b/md/UBERON/35/UBERON_0001035.md index 34729bd682..ab225f4ff7 100644 --- a/md/UBERON/35/UBERON_0001035.md +++ b/md/UBERON/35/UBERON_0001035.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001035 * *Label* = dento-alveolar joint - * *Definition* = Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gomphosis] + * *Definition* = Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gomphosis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * dento-alveolar syndesmosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7495] - * gomphosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001499] - * peg-and-socket joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7495] - * syndesmosis dentoalveolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7495[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * socket [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7495] + * dento-alveolar syndesmosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7495 ] + * gomphosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001499 ] + * peg-and-socket joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7495 ] + * syndesmosis dentoalveolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7495, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * socket [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7495 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001135.md b/md/UBERON/35/UBERON_0001135.md index 5c8cde4021..bf9acf59a2 100644 --- a/md/UBERON/35/UBERON_0001135.md +++ b/md/UBERON/35/UBERON_0001135.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001135 * *Label* = smooth muscle tissue - * *Definition* = Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Smooth_muscle_tissue] + * *Definition* = Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Smooth_muscle_tissue ] * *Comment* = terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells. ## Synonyms @@ -11,10 +11,10 @@ * involuntary muscle * non-striated muscle * smooth muscle - * textus muscularis nonstriatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14070[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visceral muscle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * visceral muscle tissue [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * textus muscularis levis; textus muscularis nonstriatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Smooth_muscle_tissue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * textus muscularis nonstriatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14070, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visceral muscle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * visceral muscle tissue [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * textus muscularis levis; textus muscularis nonstriatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Smooth_muscle_tissue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,7 +35,7 @@ * MIAA:0000303 * OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA * TAO:0005274 - * UMLS:C1267092 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Smooth_Muscle_Tissue] + * UMLS:C1267092 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Smooth_Muscle_Tissue ] * VHOG:0001246 * WBbt:0005781 * Wikipedia:Smooth_muscle_tissue @@ -61,7 +61,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [smooth muscle cell](../../CL/92/CL_0000192.md) and [muscle tissue](../../UBERON/85/UBERON_0002385.md) ## Other Logical Axioms @@ -72,8 +72,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Involuntary muscle tissue consisting of uninucleate spindle-shaped fibers.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the first bilateral animals possessed only smooth muscles with the molecular repertoire necessary to build a striated muscle. (...) it is more parsimonious to regard striated muscle cells as a sister cell type to the smooth muscle cells. In this scenario, striated and smooth muscles would have arisen in the stem lineage that led to the Nephrozoa (i.e. all Bilateria exclusive the acoelomorphs) (Hejnol et al., 2009), from an 'acoel-like' smooth muscle, by segregation and divergence of functions and through differential recruitment of additional genes[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001235.md b/md/UBERON/35/UBERON_0001235.md index d2a6079190..bcb91b374e 100644 --- a/md/UBERON/35/UBERON_0001235.md +++ b/md/UBERON/35/UBERON_0001235.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001235 * *Label* = adrenal cortex - * *Definition* = Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_cortex] + * *Definition* = Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_cortex ] * *Comment* = Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO ## Synonyms @@ -13,8 +13,8 @@ * cortex of adrenal gland * cortex of suprarenal gland * suprarenal cortex - * cortex glandulae suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000045] - * cortex glandulae suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cortex glandulae suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000045 ] + * cortex glandulae suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * suprarenal ## Cross-references @@ -31,7 +31,7 @@ * MAT:0000494 * MESH:A06.407.071.140 * SCTID:362584002 - * UMLS:C0001613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adrenal_Cortex] + * UMLS:C0001613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adrenal_Cortex ] * VHOG:0001481 * Wikipedia:Adrenal_cortex * XAO:0000165 @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [adrenal gland](../../UBERON/69/UBERON_0002369.md) ## Other Logical Axioms @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues (medulla), but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001335.md b/md/UBERON/35/UBERON_0001335.md index 751042a74f..d66907f7a5 100644 --- a/md/UBERON/35/UBERON_0001335.md +++ b/md/UBERON/35/UBERON_0001335.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001335 * *Label* = prostatic urethra - * *Definition* = The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_urethra] + * *Definition* = The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_urethra ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * male prostatic urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011777] - * pars prostatica urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011777] - * pars prostatica urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prostatic part of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011777] + * male prostatic urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011777 ] + * pars prostatica urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011777 ] + * pars prostatica urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prostatic part of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011777 ] * prostatic part of urethra - * pars prostatica urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003163] + * pars prostatica urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003163 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:19673 * MA:0002646 * SCTID:279434009 - * UMLS:C0458450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Portion_of_the_Male_Urethra] + * UMLS:C0458450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Portion_of_the_Male_Urethra ] * Wikipedia:Prostatic_urethra * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001435.md b/md/UBERON/35/UBERON_0001435.md index 84878ef270..1fc028a89e 100644 --- a/md/UBERON/35/UBERON_0001435.md +++ b/md/UBERON/35/UBERON_0001435.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001435 * *Label* = carpal bone - * *Definition* = A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]. In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]. In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * bone of carpus - * carpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * carpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * carpal skeleton bone ## Cross-references @@ -19,7 +19,7 @@ * MA:0000296 * MESH:A02.835.232.087.144 * SCTID:83936004 - * UMLS:C0007285 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carpal_Bone] + * UMLS:C0007285 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carpal_Bone ] * Wikipedia:Carpus * galen:CarpalBone * http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001535.md b/md/UBERON/35/UBERON_0001535.md index 102c73db00..04bc97d6ad 100644 --- a/md/UBERON/35/UBERON_0001535.md +++ b/md/UBERON/35/UBERON_0001535.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001535 * *Label* = vertebral artery - * *Definition* = The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_artery] + * *Definition* = The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria vertebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria vertebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA * SCTID:181323003 * TAO:0005033 - * UMLS:C0042559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Artery] + * UMLS:C0042559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Artery ] * VHOG:0000263 * Wikipedia:Vertebral_artery * ZFA:0005033 @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001635.md b/md/UBERON/35/UBERON_0001635.md index 40e726ee8d..50066a6e7c 100644 --- a/md/UBERON/35/UBERON_0001635.md +++ b/md/UBERON/35/UBERON_0001635.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001635 * *Label* = superior cerebellar artery - * *Definition* = The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_artery] + * *Definition* = The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria superior cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria superior cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:50573 * MA:0001934 * SCTID:244214000 - * UMLS:C0149575 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Cerebellar_Artery] + * UMLS:C0149575 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Cerebellar_Artery ] * Wikipedia:Superior_cerebellar_artery * http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/200px-CerebellumArteries.jpg @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001735.md b/md/UBERON/35/UBERON_0001735.md index 55c6bc380c..37310dec31 100644 --- a/md/UBERON/35/UBERON_0001735.md +++ b/md/UBERON/35/UBERON_0001735.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001735 * *Label* = tonsillar ring - * *Definition* = lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Waldeyer's_ring] + * *Definition* = lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Waldeyer's_ring ] * *Comment* = see also FMA:79771 naso-pharyngeal lymphoid tissue ## Synonyms * Waldeyer's ring * Waldeyer's tonsillar ring - * anulus lymphoideus pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55070[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anulus lymphoideus pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55070, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * oropharyngeal lymphoid tissue * pharyngeal lymphatic ring * pharyngeal lymphoid ring @@ -20,7 +20,7 @@ * FMA:55070 * MA:0000752 * SCTID:56411004 - * UMLS:C0459892 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Waldeyers_Tonsillar_Ring] + * UMLS:C0459892 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Waldeyers_Tonsillar_Ring ] * Wikipedia:Waldeyer's_ring * ncithesaurus:Waldeyers_Tonsillar_Ring @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001835.md b/md/UBERON/35/UBERON_0001835.md index 9e2e1f4ed3..faa20e31f0 100644 --- a/md/UBERON/35/UBERON_0001835.md +++ b/md/UBERON/35/UBERON_0001835.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001835 * *Label* = lower lip - * *Definition* = Lip that covers the lower portion of the mouth.[TAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002060[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_lip] + * *Definition* = Lip that covers the lower portion of the mouth.[TAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002060, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_lip ] ## Synonyms - * lower jaw lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * labium inferius oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_lip[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lower jaw lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * labium inferius oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_lip, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA * SCTID:245777007 * TAO:0002060 - * UMLS:C0458583 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Lip] + * UMLS:C0458583 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Lip ] * Wikipedia:Lower_lip * ZFA:0005225 * http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lip](../../UBERON/33/UBERON_0001833.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lip that covers the lower portion of the mouth.[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003392 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0001935.md b/md/UBERON/35/UBERON_0001935.md index d3754a0754..b5de8558ff 100644 --- a/md/UBERON/35/UBERON_0001935.md +++ b/md/UBERON/35/UBERON_0001935.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001935 * *Label* = ventromedial nucleus of hypothalamus - * *Definition* = The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventromedial_hypothalamic_nucleus] + * *Definition* = The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventromedial_hypothalamic_nucleus ] * *Comment* = part of tuberal area in MA ## Synonyms * ventromedial hypothalamic nucleus - * VMH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1572[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus hypothalamicus ventromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:398[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventromedialis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002472] - * tuberal nucleus (Ganser) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:398] - * ventrolateral hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002472] - * ventrolateral nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002472] - * ventromedial nucleus hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:398] - * ventromedial nucleus of hypothalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002472] - * ventromedial nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:398] + * VMH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1572, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus hypothalamicus ventromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:398, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventromedialis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002472 ] + * tuberal nucleus (Ganser) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:398 ] + * ventrolateral hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002472 ] + * ventrolateral nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002472 ] + * ventromedial nucleus hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:398 ] + * ventromedial nucleus of hypothalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002472 ] + * ventromedial nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:398 ] ## Cross-references @@ -31,9 +31,9 @@ * MA:0000845 * MESH:A08.186.211.730.385.357.352.953 * NIF_GrossAnatomy:birnlex_1572 - * NeuroNames:398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1572] + * NeuroNames:398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1572 ] * SCTID:369124007 - * UMLS:C0042518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1572] + * UMLS:C0042518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1572 ] * Wikipedia:Ventromedial_hypothalamic_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002035.md b/md/UBERON/35/UBERON_0002035.md index 324cab024d..89a3096e42 100644 --- a/md/UBERON/35/UBERON_0002035.md +++ b/md/UBERON/35/UBERON_0002035.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002035 * *Label* = medial preoptic nucleus - * *Definition* = The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sexually_dimorphic_nucleus] + * *Definition* = The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sexually_dimorphic_nucleus ] ## Synonyms * medial preoptic hypothalamic nucleus - * MPO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_706[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area praeoptica medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:380[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area preopticus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:380[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial preopticarea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MPO] - * nucleus praeopticus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:380[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus preopticus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:380[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * MPO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_706, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area praeoptica medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:380, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area preopticus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:380, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial preopticarea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MPO ] + * nucleus praeopticus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:380, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus preopticus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:380, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,10 +23,10 @@ * FMA:67890 * MA:0000840 * NIF_GrossAnatomy:birnlex_706 - * NeuroNames:380 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_706] + * NeuroNames:380 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_706 ] * SCTID:369128005 - * UMLS:C0175313 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_706] - * UMLS:C1289555 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_706] + * UMLS:C0175313 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_706 ] + * UMLS:C1289555 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_706 ] * Wikipedia:Sexually_dimorphic_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002135.md b/md/UBERON/35/UBERON_0002135.md index 5f3ce8f2a0..9ec63e456d 100644 --- a/md/UBERON/35/UBERON_0002135.md +++ b/md/UBERON/35/UBERON_0002135.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002135 * *Label* = mitral valve - * *Definition* = Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mitral_valve] + * *Definition* = Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mitral_valve ] * *Comment* = AO notes: FMA part_ofs changed to connects ## Synonyms * left atrioventricular valve - * valva atrioventricularis sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7235[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valva atrioventricularis sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7235, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * bicuspid valve - * valva mitralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mitral_valve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valva mitralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mitral_valve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A07.541.510.507 * OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA * SCTID:181286006 - * UMLS:C0026264 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mitral_Valve] + * UMLS:C0026264 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mitral_Valve ] * VHOG:0000817 * Wikipedia:Mitral_valve * galen:MitralValve @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [atrioventricular valve](../../UBERON/33/UBERON_0002133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow part of left atrium](../../UBERON/66/UBERON_0005966.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A valve of the heart, composed of two triangular flaps, that is located between the left atrium and left ventricle and regulates blood flow between these chambers. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002235.md b/md/UBERON/35/UBERON_0002235.md index bc2e453fb1..7c07c4ca2e 100644 --- a/md/UBERON/35/UBERON_0002235.md +++ b/md/UBERON/35/UBERON_0002235.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002235 * *Label* = tubercle of rib - * *Definition* = The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tubercle_(rib)] + * *Definition* = The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tubercle_(rib) ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:7583 * MA:0001417 * SCTID:361104005 - * UMLS:C0222809 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_Tubercle] + * UMLS:C0222809 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_Tubercle ] * Wikipedia:Tubercle_(rib) * ncithesaurus:Rib_Tubercle @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [body of rib](../../UBERON/31/UBERON_0002231.md) and [tubercle](../../UBERON/13/UBERON_0005813.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002335.md b/md/UBERON/35/UBERON_0002335.md index 217963b616..8a9ce55bb6 100644 --- a/md/UBERON/35/UBERON_0002335.md +++ b/md/UBERON/35/UBERON_0002335.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002335 * *Label* = macula densa - * *Definition* = The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072024[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_densa] + * *Definition* = The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072024, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_densa ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:86333 * MA:0002603 * SCTID:244657003 - * UMLS:C0227662 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Macula_Densa] + * UMLS:C0227662 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Macula_Densa ] * Wikipedia:Macula_densa * ncithesaurus:Macula_Densa @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002435.md b/md/UBERON/35/UBERON_0002435.md index 3bbc7b369b..b97e7147e8 100644 --- a/md/UBERON/35/UBERON_0002435.md +++ b/md/UBERON/35/UBERON_0002435.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002435 * *Label* = striatum - * *Definition* = A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:jl[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Striatum] + * *Definition* = A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:jl, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Striatum ] * *Comment* = AO notes: FMA divides 'striatum of neuraxis' into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen ## Synonyms - * neostriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021756[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Striatum] - * neostriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1672] - * neuraxis striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83683] - * striate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021756[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Striatum] - * striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1672] - * striatum of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83683] - * caudate putamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1672] - * corpus striatum (Zilles) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:225[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000891] - * dorsal striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1672] - * striated nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000418] + * neostriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021756, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Striatum ] + * neostriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1672 ] + * neuraxis striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83683 ] + * striate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021756, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Striatum ] + * striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1672 ] + * striatum of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83683 ] + * caudate putamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1672 ] + * corpus striatum (Zilles) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:225, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000891 ] + * dorsal striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1672 ] + * striated nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000418 ] ## Cross-references @@ -34,8 +34,8 @@ * MA:0000891 * MESH:A08.186.211.730.885.105.487.550 * NIF_GrossAnatomy:birnlex_1672 - * NeuroNames:225 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1672] - * UMLS:C0162512 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1672] + * NeuroNames:225 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1672 ] + * UMLS:C0162512 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1672 ] * Wikipedia:Striatum * http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png @@ -62,8 +62,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = striatal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002535.md b/md/UBERON/35/UBERON_0002535.md index 9cfee54ebc..2813b083dd 100644 --- a/md/UBERON/35/UBERON_0002535.md +++ b/md/UBERON/35/UBERON_0002535.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002535 * *Label* = gill - * *Definition* = Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gill] + * *Definition* = Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gill ] * *Comment* = this term potentially applicable across multiple metazoa - see also the subclass 'pharyngeal arch derived gill' ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002635.md b/md/UBERON/35/UBERON_0002635.md index bf8ed5219d..27f793d2b3 100644 --- a/md/UBERON/35/UBERON_0002635.md +++ b/md/UBERON/35/UBERON_0002635.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002635 * *Label* = regional part of midbrain tegmentum - * *Definition* = A multi-tissue structure that is part of a midbrain tegmentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a midbrain tegmentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain tegmentum segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62399] - * segment of midbrain tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1227] + * midbrain tegmentum segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62399 ] + * segment of midbrain tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1227 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002735.md b/md/UBERON/35/UBERON_0002735.md index 06ac8f3ff1..deefe8c90e 100644 --- a/md/UBERON/35/UBERON_0002735.md +++ b/md/UBERON/35/UBERON_0002735.md @@ -6,15 +6,15 @@ ## Synonyms - * fibrae pontis transversae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superficial transverse fibers of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514] - * transverse fibers of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514] - * transverse pontine fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514] - * transverse pontine fibres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514] - * transverse pontine tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72514] - * fibrae pontis superficiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:619[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae transversae superficiales pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:619[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transverse fibers of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tfp] + * fibrae pontis transversae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superficial transverse fibers of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514 ] + * transverse fibers of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514 ] + * transverse pontine fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514 ] + * transverse pontine fibres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514 ] + * transverse pontine tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72514 ] + * fibrae pontis superficiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:619, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae transversae superficiales pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:619, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transverse fibers of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tfp ] ## Cross-references @@ -22,9 +22,9 @@ * BAMS:tpf * FMA:72514 * NIF_GrossAnatomy:birnlex_1535 - * NeuroNames:619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1535] + * NeuroNames:619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1535 ] * SCTID:79836003 - * UMLS:C0228446 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1535] + * UMLS:C0228446 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1535 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002835.md b/md/UBERON/35/UBERON_0002835.md index 9ddfa3a916..8746fbd8d1 100644 --- a/md/UBERON/35/UBERON_0002835.md +++ b/md/UBERON/35/UBERON_0002835.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002835 * *Label* = thoracic dorsal root ganglion - * *Definition* = A dorsal root ganglion that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal root ganglion that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dorsal root ganglion of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of dorsal root of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion spinalis of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6006] - * thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6006] - * thorax dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax ganglion of dorsal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax ganglion spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * dorsal root ganglion of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of dorsal root of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion spinalis of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6006 ] + * thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6006 ] + * thorax dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax ganglion of dorsal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax ganglion spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:6006 * NIF_GrossAnatomy:birnlex_2600 * SCTID:278326009 - * UMLS:C0457467 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2600] + * UMLS:C0457467 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2600 ] ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal root ganglion](../../UBERON/44/UBERON_0000044.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0002935.md b/md/UBERON/35/UBERON_0002935.md index 155472cfb1..2a461ea678 100644 --- a/md/UBERON/35/UBERON_0002935.md +++ b/md/UBERON/35/UBERON_0002935.md @@ -6,21 +6,21 @@ ## Synonyms - * magnocellular division of ventral anterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62192] - * magnocellular ventral anterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * nucleus lateropolaris (magnocellularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * nucleus lateropolaris magnocellularis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * nucleus rostralis lateralis situs perifascicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * nucleus thalamicus ventral anterior, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * nucleus ventralis anterior, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * pars magnocellularis nuclei ventralis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62192[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral anterior nucleus, magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62192] - * ventral anterior nucleus, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62192] - * ventral anterior thalamic nucleus, magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62192] - * ventroanterior thalamic nucleus, magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_716] - * VAMC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_716[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * magnocellular part of the ventral anterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:336] - * nucleus thalamicus ventralis anterior, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:336[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * magnocellular division of ventral anterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62192 ] + * magnocellular ventral anterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * nucleus lateropolaris (magnocellularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * nucleus lateropolaris magnocellularis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * nucleus rostralis lateralis situs perifascicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * nucleus thalamicus ventral anterior, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * nucleus ventralis anterior, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * pars magnocellularis nuclei ventralis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62192, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral anterior nucleus, magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62192 ] + * ventral anterior nucleus, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62192 ] + * ventral anterior thalamic nucleus, magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62192 ] + * ventroanterior thalamic nucleus, magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_716 ] + * VAMC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_716, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * magnocellular part of the ventral anterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:336 ] + * nucleus thalamicus ventralis anterior, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:336, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * BM:Die-Th-VA-VAmc * FMA:62192 * NIF_GrossAnatomy:birnlex_716 - * NeuroNames:336 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_716] - * UMLS:C0228335 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_716] + * NeuroNames:336 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_716 ] + * UMLS:C0228335 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_716 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003035.md b/md/UBERON/35/UBERON_0003035.md index 298e985a4a..d22e455414 100644 --- a/md/UBERON/35/UBERON_0003035.md +++ b/md/UBERON/35/UBERON_0003035.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003035 * *Label* = regional part of cerebellar white matter - * *Definition* = A multi-tissue structure that is part of a white matter of cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a white matter of cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of cerebellar white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_959] + * segment of cerebellar white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_959 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [white matter of cerebellum](../../UBERON/17/UBERON_0002317.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003135.md b/md/UBERON/35/UBERON_0003135.md index 9bba84cef0..ea64613d06 100644 --- a/md/UBERON/35/UBERON_0003135.md +++ b/md/UBERON/35/UBERON_0003135.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003135 * *Label* = male reproductive organ - * *Definition* = A male organ involved in reproduction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:xp] + * *Definition* = A male organ involved in reproduction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:xp ] ## Synonyms - * male organism reproductive organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism reproductive structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism reproductive system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism sex organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male reproductive gland/organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000545] + * male organism reproductive organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism reproductive structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism reproductive system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism sex organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male reproductive gland/organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000545 ] * male reproductive system organ * male sex organ - * reproductive organ of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive structure of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system organ of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sex organ of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * reproductive organ of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive structure of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system organ of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sex organ of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [reproductive organ](../../UBERON/33/UBERON_0003133.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003235.md b/md/UBERON/35/UBERON_0003235.md index b8ab3a3cd7..aa44ef9f75 100644 --- a/md/UBERON/35/UBERON_0003235.md +++ b/md/UBERON/35/UBERON_0003235.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003235 * *Label* = epithelium of upper jaw - * *Definition* = An epithelium that is part of a upper jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a upper jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palatoquadrate arch epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palatoquadrate arch epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper jaw epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper jaw epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palatoquadrate arch epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palatoquadrate arch epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper jaw epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper jaw epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003335.md b/md/UBERON/35/UBERON_0003335.md index 3795ac7bec..c07b5c6aa1 100644 --- a/md/UBERON/35/UBERON_0003335.md +++ b/md/UBERON/35/UBERON_0003335.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003335 * *Label* = serosa of colon - * *Definition* = A serous membrane that is part of a colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * colon serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colon serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colonic serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14990] - * large bowel serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral peritoneum of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14990] + * colon serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colon serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colonic serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14990 ] + * large bowel serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral peritoneum of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14990 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003435.md b/md/UBERON/35/UBERON_0003435.md index 8bdfa6c426..649f0b3744 100644 --- a/md/UBERON/35/UBERON_0003435.md +++ b/md/UBERON/35/UBERON_0003435.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003435 * *Label* = pedal digit nerve - * *Definition* = A nerve that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of foot nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000649] - * hind limb digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * nerve of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit of foot nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000649 ] + * hind limb digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * nerve of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003535.md b/md/UBERON/35/UBERON_0003535.md index 994add5f89..d7f53557f3 100644 --- a/md/UBERON/35/UBERON_0003535.md +++ b/md/UBERON/35/UBERON_0003535.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003535 * *Label* = vagus X nerve trunk - * *Definition* = A nerve trunk that is part of a vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve trunk that is part of a vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trunk of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6221] - * vagus neural trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6221] + * trunk of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6221 ] + * vagus neural trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6221 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve trunk](../../UBERON/64/UBERON_0002464.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagus nerve](../../UBERON/59/UBERON_0001759.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003635.md b/md/UBERON/35/UBERON_0003635.md index 45670cc346..b2949f2446 100644 --- a/md/UBERON/35/UBERON_0003635.md +++ b/md/UBERON/35/UBERON_0003635.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003635 * *Label* = pedal digit 5 - * *Definition* = 5th digit of the hind autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fifth_toe[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = 5th digit of the hind autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fifth_toe, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * 5th toe - * digit 5 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17472] + * digit 5 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17472 ] * digitus V of pes - * digitus minimus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fifth_toe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * digitus quintus [V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25053] - * digitus quintus [V] pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25053[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * digitus minimus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fifth_toe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digitus quintus [V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25053 ] + * digitus quintus [V] pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25053, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * digitus quintus of pes - * digitus quintus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fifth_toe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25053] - * fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25053] - * foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000469] + * digitus quintus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fifth_toe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25053 ] + * fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25053 ] + * foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000469 ] * hind digit 5 - * hind digit V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010658] - * hind limb digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind digit V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010658 ] + * hind limb digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pedal digitus minimus * pes digit V - * toe 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002057] - * foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * toe 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002057 ] + * foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * little toe - * digitus quintus (V) pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002353] + * digitus quintus (V) pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002353 ] ## Cross-references @@ -37,7 +37,7 @@ * FMA:25053 * MA:0000469 * SCTID:362830009 - * UMLS:C1708087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_5] + * UMLS:C1708087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_5 ] * Wikipedia:Fifth_toe * http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png @@ -55,15 +55,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 5](../../UBERON/52/UBERON_0006052.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003835.md b/md/UBERON/35/UBERON_0003835.md index 7e1e84d5a8..7355aafac5 100644 --- a/md/UBERON/35/UBERON_0003835.md +++ b/md/UBERON/35/UBERON_0003835.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003835 * *Label* = abdominal segment blood vessel - * *Definition* = A blood vessel that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment of trunk blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdominal segment of trunk blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0003935.md b/md/UBERON/35/UBERON_0003935.md index 1b3b6122b4..415732b5a5 100644 --- a/md/UBERON/35/UBERON_0003935.md +++ b/md/UBERON/35/UBERON_0003935.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003935 * *Label* = mesenchyme pelvic fin - * *Definition* = Mesenchyme that is part of a pelvic fin [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pelvic fin [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of pelvic fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvic fin mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of pelvic fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvic fin mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004035.md b/md/UBERON/35/UBERON_0004035.md index bbc23896e0..a2f34543ee 100644 --- a/md/UBERON/35/UBERON_0004035.md +++ b/md/UBERON/35/UBERON_0004035.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004035 * *Label* = subplate - * *Definition* = the transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008440[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subplate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/mouse-anatomy-ontology/issues/1] + * *Definition* = the transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008440, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subplate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/mouse-anatomy-ontology/issues/1 ] * *Comment* = The transient fetal subplate zone, together with the marginal zone and the cortical plate, represents the developmental anlage of the mammalian cerebral cortex. It serves as a waiting compartment for growing cortical afferents; its cells are involved in the establishment of pioneering cortical efferent projections and transient fetal circuitry, and apparently have a number of other developmental roles. The subplate zone is a phylogenetically recent structure and it is most developed in the human brain. Subplate neurons are among the first generated neurons in the mammalian cerebral cortex [1]. These neurons disappear during postnatal development and are important in establishing the correct wiring [2][3] and functional maturation [4] of the cerebral cortex. Subplate neurons appear to be selectively sensitive to injury (such as hypoxia) which in humans are associated with motor and cognitive defects[WP]. ## Synonyms - * cerebral cortex subplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:32833] - * SP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * cerebral cortex subplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:32833 ] + * SP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004135.md b/md/UBERON/35/UBERON_0004135.md index daa02a122c..24a3f2c263 100644 --- a/md/UBERON/35/UBERON_0004135.md +++ b/md/UBERON/35/UBERON_0004135.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004135 * *Label* = distal tubule - * *Definition* = The distal tubule is a nephron tubule that consists of the convoluted and straight distal tubule segments [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072017] + * *Definition* = The distal tubule is a nephron tubule that consists of the convoluted and straight distal tubule segments [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072017 ] ## Synonyms - * kidney distal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002633] + * kidney distal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002633 ] * renal distal tubule ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004235.md b/md/UBERON/35/UBERON_0004235.md index 178947cc68..ee785c24ff 100644 --- a/md/UBERON/35/UBERON_0004235.md +++ b/md/UBERON/35/UBERON_0004235.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004235 * *Label* = mammary gland smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a lactiferous gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a lactiferous gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -56,15 +56,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004335.md b/md/UBERON/35/UBERON_0004335.md index 7b8b5dcf0c..0c35beb035 100644 --- a/md/UBERON/35/UBERON_0004335.md +++ b/md/UBERON/35/UBERON_0004335.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004335 * *Label* = proximal phalanx of pedal digit 4 - * *Definition* = A proximal phalanx that is part of a pedal digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th toe proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth proximal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32620] - * proximal phalanx of 4th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32620] - * proximal phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32620] + * 4th toe proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth proximal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32620 ] + * proximal phalanx of 4th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32620 ] + * proximal phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32620 ] * proximal phalanx of the 4th toe ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004435.md b/md/UBERON/35/UBERON_0004435.md index 118f511c75..1c0057106c 100644 --- a/md/UBERON/35/UBERON_0004435.md +++ b/md/UBERON/35/UBERON_0004435.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004435 * *Label* = proximal epiphysis of distal phalanx of manual digit 5 - * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of distal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541] - * basal epiphysis of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541] - * base of distal phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541] - * base of distal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541] - * base of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541] - * proximal epiphysis of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37541[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of distal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541 ] + * basal epiphysis of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541 ] + * base of distal phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541 ] + * base of distal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541 ] + * base of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541 ] + * proximal epiphysis of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37541, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 5](../../UBERON/14/UBERON_0004314.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004535.md b/md/UBERON/35/UBERON_0004535.md index 725920b14b..87b24cc0cf 100644 --- a/md/UBERON/35/UBERON_0004535.md +++ b/md/UBERON/35/UBERON_0004535.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004535 * *Label* = cardiovascular system - * *Definition* = Anatomical system that has as its parts the heart and blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000088] + * *Definition* = Anatomical system that has as its parts the heart and blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000088 ] * *Comment* = Usage notes: we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph. ## Synonyms - * CV system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000088] - * Herz und Gefaesssystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000088] + * CV system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000088 ] + * Herz und Gefaesssystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000088 ] ## Cross-references @@ -32,7 +32,7 @@ * OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA * SCTID:278198007 * TAO:0000010 - * UMLS:C0007226 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiovascular_System] + * UMLS:C0007226 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiovascular_System ] * VHOG:0000302 * WikipediaCategory:Cardiovascular_system * XAO:0000100 @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [has_part](../../BFO/51/BFO_0000051.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) and [has_part](../../BFO/51/BFO_0000051.md) some [heart](../../UBERON/48/UBERON_0000948.md) and [part_of](../../BFO/50/BFO_0000050.md) some [circulatory system](../../UBERON/09/UBERON_0001009.md) ## Other Logical Axioms @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The vessels of the cardiovascular system are as varied as the diverse organs they supply. However, these variations are based on modifications of a fundamental plan of organization common to vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004635.md b/md/UBERON/35/UBERON_0004635.md index fd6f33214b..22d5e25e96 100644 --- a/md/UBERON/35/UBERON_0004635.md +++ b/md/UBERON/35/UBERON_0004635.md @@ -7,9 +7,9 @@ ## Synonyms - * Eleventh dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10059] - * T11 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10059] - * eleventh thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10059] + * Eleventh dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10059 ] + * T11 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10059 ] + * eleventh thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10059 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:10059 * MA:0001448 * SCTID:181839000 - * UMLS:C0459956 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T11_Vertebra] + * UMLS:C0459956 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T11_Vertebra ] * ncithesaurus:T11_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004735.md b/md/UBERON/35/UBERON_0004735.md index f893fce141..05a18083c6 100644 --- a/md/UBERON/35/UBERON_0004735.md +++ b/md/UBERON/35/UBERON_0004735.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004735 * *Label* = archenteron - * *Definition* = The cavity of a gastrula forming a primitive gut[BTO]. The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Archenteron] + * *Definition* = The cavity of a gastrula forming a primitive gut[BTO]. The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Archenteron ] ## Synonyms - * gastrocoel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000092] - * mesenteron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * gastrocoel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000092 ] + * mesenteron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * primitive endodermal cavity ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004835.md b/md/UBERON/35/UBERON_0004835.md index 213f25a574..ad61bfd650 100644 --- a/md/UBERON/35/UBERON_0004835.md +++ b/md/UBERON/35/UBERON_0004835.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004835 * *Label* = epididymis smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a epididymis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a epididymis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epididymis involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymis non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymis smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymus smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epididymus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of epididymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of epididymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of epididymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of epididymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epididymis involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymis non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymis smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymus smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epididymus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of epididymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of epididymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of epididymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of epididymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0004935.md b/md/UBERON/35/UBERON_0004935.md index 999c454914..3f35cb04cf 100644 --- a/md/UBERON/35/UBERON_0004935.md +++ b/md/UBERON/35/UBERON_0004935.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004935 * *Label* = submucosa of cardia of stomach - * *Definition* = A submucosa that is part of a cardia of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a cardia of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardia of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardial part of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric cardia submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars cardiaca (gaster) submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach cardiac region submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of cardial part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of gastric cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of pars cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardia of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardial part of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric cardia submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars cardiaca (gaster) submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach cardiac region submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of cardial part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of gastric cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of pars cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cardia of stomach](../../UBERON/62/UBERON_0001162.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0005035.md b/md/UBERON/35/UBERON_0005035.md index 6278b8a623..3f88f8bce1 100644 --- a/md/UBERON/35/UBERON_0005035.md +++ b/md/UBERON/35/UBERON_0005035.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005035 * *Label* = mucosa of left main bronchus - * *Definition* = A mucosa that is part of a left main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a left main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left main bronchial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13138] - * left main bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left main bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left main bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left main bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left principal bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left principal bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left principal bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left principal bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of left bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left main bronchial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13138 ] + * left main bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left main bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left main bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left main bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left principal bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left principal bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left principal bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left principal bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of left bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left main bronchus](../../UBERON/78/UBERON_0002178.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0005135.md b/md/UBERON/35/UBERON_0005135.md index d082fdcebb..74e8bbd2ba 100644 --- a/md/UBERON/35/UBERON_0005135.md +++ b/md/UBERON/35/UBERON_0005135.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005135 * *Label* = metanephric glomerular epithelium - * *Definition* = A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072244] + * *Definition* = A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072244 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular epithelium](../../UBERON/88/UBERON_0004188.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0005335.md b/md/UBERON/35/UBERON_0005335.md index 1483235fba..5781fe19bd 100644 --- a/md/UBERON/35/UBERON_0005335.md +++ b/md/UBERON/35/UBERON_0005335.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005335 * *Label* = chorioallantoic membrane - * *Definition* = The chorioallantoic membrane is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N ObjectSomeValuesFrom( )) + * [cuneate fasciculus](../../UBERON/32/UBERON_0005832.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006035.md b/md/UBERON/35/UBERON_0006035.md index 04c9fd2454..86f33ffd74 100644 --- a/md/UBERON/35/UBERON_0006035.md +++ b/md/UBERON/35/UBERON_0006035.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006035 * *Label* = interdigital region between manual digits 4 and 5 - * *Definition* = An interdigital region that adjacent_to a manual digit 4 and adjacent_to a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a manual digit 4 and adjacent_to a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [adjacent to](../../RO/20/RO_0002220.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006135.md b/md/UBERON/35/UBERON_0006135.md index 724ef8c972..96a50f5f77 100644 --- a/md/UBERON/35/UBERON_0006135.md +++ b/md/UBERON/35/UBERON_0006135.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006135 * *Label* = myelinated nerve fiber - * *Definition* = Axons of neurons encased in a lipoproteinaceous material called myelin. (MeSH) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Myelinated_Nerve_Fiber] + * *Definition* = Axons of neurons encased in a lipoproteinaceous material called myelin. (MeSH) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Myelinated_Nerve_Fiber ] * *Comment* = consider adding link to UBERON:0002316 ## Synonyms @@ -15,7 +15,7 @@ * GAID:745 * MESH:A08.663.542.512 * SCTID:362296008 - * UMLS:C0027750 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myelinated_Nerve_Fiber] + * UMLS:C0027750 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myelinated_Nerve_Fiber ] * ncithesaurus:Myelinated_Nerve_Fiber ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006235.md b/md/UBERON/35/UBERON_0006235.md index 31a3ad7deb..1044be6c5e 100644 --- a/md/UBERON/35/UBERON_0006235.md +++ b/md/UBERON/35/UBERON_0006235.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006235 * *Label* = foregut-midgut junction - * *Definition* = An anatomical junctions that overlaps the foregut and midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical junctions that overlaps the foregut and midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,12 +23,12 @@ * [anatomical junction](../../UBERON/51/UBERON_0007651.md) * [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006435.md b/md/UBERON/35/UBERON_0006435.md index 1d00eb38a4..c2424de55f 100644 --- a/md/UBERON/35/UBERON_0006435.md +++ b/md/UBERON/35/UBERON_0006435.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006435 * *Label* = os penis - * *Definition* = a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] + * *Definition* = a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] * *Comment* = Taxon notes: found in most mammals, with the exception of humans ## Synonyms - * baculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] + * baculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] * os baculum - * penile bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] - * penis bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] + * penile bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] + * penis bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [penis](../../UBERON/89/UBERON_0000989.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006535.md b/md/UBERON/35/UBERON_0006535.md index 934d19c7ac..8d2b80d870 100644 --- a/md/UBERON/35/UBERON_0006535.md +++ b/md/UBERON/35/UBERON_0006535.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006535 * *Label* = skin fluid/secretion - * *Definition* = A portion of organism substance that secreted_by a zone of skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of organism substance that secreted_by a zone of skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006635.md b/md/UBERON/35/UBERON_0006635.md index d944d7a9a8..b117f0c7b1 100644 --- a/md/UBERON/35/UBERON_0006635.md +++ b/md/UBERON/35/UBERON_0006635.md @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006835.md b/md/UBERON/35/UBERON_0006835.md index 3bec07bd6c..ddbdff1aa6 100644 --- a/md/UBERON/35/UBERON_0006835.md +++ b/md/UBERON/35/UBERON_0006835.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006835 * *Label* = arthropod oviduct - * *Definition* = A tube that connects ovary to the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TADS:0000415] + * *Definition* = A tube that connects ovary to the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TADS:0000415 ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology. Note that this is not even analagous to the class 'oviduct' in uberon (as the oviduct is the entire tube, from gonad to outside) ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0006935.md b/md/UBERON/35/UBERON_0006935.md index d5a36032b7..82cd52c8bb 100644 --- a/md/UBERON/35/UBERON_0006935.md +++ b/md/UBERON/35/UBERON_0006935.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006935 * *Label* = crista ampullaris neuroepithelium - * *Definition* = An epithelium that is part of a crista ampullaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a crista ampullaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of crista of ampulla of semicircular duct of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75636] - * ampullary crest neuroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002870] + * epithelium of crista of ampulla of semicircular duct of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75636 ] + * ampullary crest neuroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002870 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crista ampullaris](../../UBERON/21/UBERON_0004721.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0007135.md b/md/UBERON/35/UBERON_0007135.md index ba8914d36f..41d9435a02 100644 --- a/md/UBERON/35/UBERON_0007135.md +++ b/md/UBERON/35/UBERON_0007135.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007135 * *Label* = neural keel - * *Definition* = An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * *Definition* = An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Synonyms - * presumptive central nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000131] + * presumptive central nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000131 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0007635.md b/md/UBERON/35/UBERON_0007635.md index c822ffb757..97fe7d1aea 100644 --- a/md/UBERON/35/UBERON_0007635.md +++ b/md/UBERON/35/UBERON_0007635.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007635 * *Label* = nucleus of medulla oblongata - * *Definition* = A neural nucleus that is part of a medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural nucleus that is part of a medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural nucleus](../../UBERON/25/UBERON_0000125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0007735.md b/md/UBERON/35/UBERON_0007735.md index 548c69cefb..df6b503619 100644 --- a/md/UBERON/35/UBERON_0007735.md +++ b/md/UBERON/35/UBERON_0007735.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007735 * *Label* = metacarpophalangeal joint of manual digit 1 - * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpophalangeal joint of digit 1 - * metacarpophalangeal joint of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35249] - * metacarpo-phalangeal joint of digit 1 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25057] - * metacarpophalangeal joint of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35249[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpophalangeal joint of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35249 ] + * metacarpo-phalangeal joint of digit 1 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25057 ] + * metacarpophalangeal joint of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35249, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manual digit 1](../../UBERON/38/UBERON_0004338.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0007835.md b/md/UBERON/35/UBERON_0007835.md index ec8a40873b..12f5ed3661 100644 --- a/md/UBERON/35/UBERON_0007835.md +++ b/md/UBERON/35/UBERON_0007835.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007835 * *Label* = sacral spinal cord ventral commissure - * *Definition* = A spinal cord ventral commissure that is part of a sacral spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord ventral commissure that is part of a sacral spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sacral spinal cord anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1528] + * sacral spinal cord anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1528 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral spinal cord](../../UBERON/43/UBERON_0005843.md) and [spinal cord ventral commissure](../../UBERON/70/UBERON_0004170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0008335.md b/md/UBERON/35/UBERON_0008335.md index d3a73588b1..791fe524fb 100644 --- a/md/UBERON/35/UBERON_0008335.md +++ b/md/UBERON/35/UBERON_0008335.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008335 * *Label* = ventrolateral sulcus of medulla oblongata - * *Definition* = A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * anterolateral sulcus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83797] - * sulcus anterolateralis medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventrolateral fissure of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83797] - * ventrolateral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83797] - * ventrolateral sulcus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83797] - * anterolateral groove of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002777] - * sulcus anterolateralis medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002777] - * sulcus ventrolateralis medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002777] - * ventrolateral sulcus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002777] + * anterolateral sulcus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83797 ] + * sulcus anterolateralis medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventrolateral fissure of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83797 ] + * ventrolateral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83797 ] + * ventrolateral sulcus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83797 ] + * anterolateral groove of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002777 ] + * sulcus anterolateralis medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002777 ] + * sulcus ventrolateralis medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002777 ] + * ventrolateral sulcus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002777 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0008435.md b/md/UBERON/35/UBERON_0008435.md index d634055bdd..1de07d2c05 100644 --- a/md/UBERON/35/UBERON_0008435.md +++ b/md/UBERON/35/UBERON_0008435.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008435 * *Label* = vertebral arch of sacral segment - * *Definition* = A neural arch that is part of a sacral vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural arch that is part of a sacral vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural arch](../../UBERON/61/UBERON_0003861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sacral vertebra](../../UBERON/94/UBERON_0001094.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008435 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0008835.md b/md/UBERON/35/UBERON_0008835.md index 99b3484387..1bffb6681b 100644 --- a/md/UBERON/35/UBERON_0008835.md +++ b/md/UBERON/35/UBERON_0008835.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008835 * *Label* = hepatic diverticulum - * *Definition* = An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.stembook.org/node/512] + * *Definition* = An out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. Constitutes the first morphological sign of the embryonic liver. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile ducts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.stembook.org/node/512 ] * *Comment* = taxon notes: in mice, the hepatic diverticulum forms by E9 and expands into an obvious liver bud by E10. Development notes: The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut. ## Synonyms - * liver diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000101] - * diverticulum hepaticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_diverticulum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * liver diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000101 ] + * diverticulum hepaticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_diverticulum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0011057 * EHDAA2:0000740 * EHDAA:1530 - * UMLS:C1512407 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Diverticulum] + * UMLS:C1512407 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Diverticulum ] * Wikipedia:Hepatic_diverticulum * XAO:0000101 * http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0008935.md b/md/UBERON/35/UBERON_0008935.md index e7c7df60dd..69bb9e1749 100644 --- a/md/UBERON/35/UBERON_0008935.md +++ b/md/UBERON/35/UBERON_0008935.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008935 * *Label* = albumen gland - * *Definition* = The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000054] + * *Definition* = The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000054 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0009035.md b/md/UBERON/35/UBERON_0009035.md index 3d98e86cb5..59086eb5d4 100644 --- a/md/UBERON/35/UBERON_0009035.md +++ b/md/UBERON/35/UBERON_0009035.md @@ -7,7 +7,7 @@ ## Synonyms - * kidney straight tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002634] + * kidney straight tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002634 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0009635.md b/md/UBERON/35/UBERON_0009635.md index 6fd5c54f62..ec5059da08 100644 --- a/md/UBERON/35/UBERON_0009635.md +++ b/md/UBERON/35/UBERON_0009635.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009635 * *Label* = parachordal cartilage - * *Definition* = Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:1588903958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:1588903958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * parachordal cartilages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * parachordal cartilages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * TAO:0001423 - * UMLS:C1518887 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parachordal_Cartilage] + * UMLS:C1518887 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parachordal_Cartilage ] * ZFA:0001423 * ncithesaurus:Parachordal_Cartilage @@ -22,8 +22,8 @@ ## Superclasses * [cartilage element of chondrocranium](../../UBERON/32/UBERON_0003932.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [otic region](../../UBERON/10/UBERON_0003110.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [occipital region](../../UBERON/02/UBERON_0005902.md) ## Equivalencies @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0009735.md b/md/UBERON/35/UBERON_0009735.md index 911e95ab21..d1b3051753 100644 --- a/md/UBERON/35/UBERON_0009735.md +++ b/md/UBERON/35/UBERON_0009735.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009735 * *Label* = sublaminar layers S1 or S3 or S4 - * *Definition* = One of sublaminar layers S1, S3, or S4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S1, S3, or S4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md)or[sublaminar layer S3](../../UBERON/24/UBERON_0008924.md)or[sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0009835.md b/md/UBERON/35/UBERON_0009835.md index 5fdcb7ea4b..bf352260f2 100644 --- a/md/UBERON/35/UBERON_0009835.md +++ b/md/UBERON/35/UBERON_0009835.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009835 * *Label* = anterior cingulate cortex - * *Definition* = the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy[1] and emotion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cingulate_cortex] + * *Definition* = the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy[1] and emotion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cingulate_cortex ] ## Synonyms - * ACC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior commissural nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AC] + * ACC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior commissural nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AC ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0010135.md b/md/UBERON/35/UBERON_0010135.md index ce78492707..489b410907 100644 --- a/md/UBERON/35/UBERON_0010135.md +++ b/md/UBERON/35/UBERON_0010135.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0010235.md b/md/UBERON/35/UBERON_0010235.md index c04e78cd6b..5acf76677c 100644 --- a/md/UBERON/35/UBERON_0010235.md +++ b/md/UBERON/35/UBERON_0010235.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010235 * *Label* = uvular muscle - * *Definition* = The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] + * *Definition* = The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] ## Synonyms - * uvular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46733] - * azygos uvulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] - * m. uvulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] - * musculus uvulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] - * musculus uvulae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] - * uvulae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculus_uvulae] + * uvular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46733 ] + * azygos uvulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] + * m. uvulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] + * musculus uvulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] + * musculus uvulae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] + * uvulae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculus_uvulae ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has muscle insertion](../../RO/73/RO_0002373.md) some [palatine uvula](../../UBERON/34/UBERON_0001734.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscle of the uvuli is an integral part of the soft palate and is innervated by Cranial Nerve X .[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0010335.md b/md/UBERON/35/UBERON_0010335.md index b427fbcdba..abfab9704e 100644 --- a/md/UBERON/35/UBERON_0010335.md +++ b/md/UBERON/35/UBERON_0010335.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010335 * *Label* = maxillary process mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a maxillary process mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [maxillary process mesenchyme](../../UBERON/26/UBERON_0009526.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0010535.md b/md/UBERON/35/UBERON_0010535.md index 1e335b5b7a..5c021c6108 100644 --- a/md/UBERON/35/UBERON_0010535.md +++ b/md/UBERON/35/UBERON_0010535.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010535 * *Label* = primitive metanephric nephron - * *Definition* = A primitive nephron that is part of a metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A primitive nephron that is part of a metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * developing metanephric nephron * primitive metanephric nephron - * primitive nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001516] + * primitive nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001516 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [primitive nephron](../../UBERON/32/UBERON_0010532.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0010935.md b/md/UBERON/35/UBERON_0010935.md index f1be4840e4..d8b3f6106c 100644 --- a/md/UBERON/35/UBERON_0010935.md +++ b/md/UBERON/35/UBERON_0010935.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0011135.md b/md/UBERON/35/UBERON_0011135.md index 0de9eee472..236e09ac51 100644 --- a/md/UBERON/35/UBERON_0011135.md +++ b/md/UBERON/35/UBERON_0011135.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011135 * *Label* = intervertebral cartilage - * *Definition* = A cartilage element that lies between two successive vertebral centra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A cartilage element that lies between two successive vertebral centra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [cartilage element](../../UBERON/44/UBERON_0007844.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Block of cartilage, which usually ossifies, that lies between successive vertebral centra.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0011535.md b/md/UBERON/35/UBERON_0011535.md index 674d88bf3e..32c8da7176 100644 --- a/md/UBERON/35/UBERON_0011535.md +++ b/md/UBERON/35/UBERON_0011535.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011535 * *Label* = chondroglossus muscle - * *Definition* = The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chondroglossus] + * *Definition* = The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chondroglossus ] ## Synonyms - * chondroglossal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46700] - * chondroglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46700] - * chondroglossal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chondroglossus] - * musculus chondroglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + _muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chondroglossal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46700 ] + * chondroglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46700 ] + * chondroglossal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chondroglossus ] + * musculus chondroglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = _muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0011635.md b/md/UBERON/35/UBERON_0011635.md index 0f9e70f31e..b424b286cd 100644 --- a/md/UBERON/35/UBERON_0011635.md +++ b/md/UBERON/35/UBERON_0011635.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011635 * *Label* = splenial bone - * *Definition* = The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenial] + * *Definition* = The splenial is a small bone in the lower jaw of reptiles, amphibians and birds, usually located on the lingual side (closest to the tongue) between the angular and suprangular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenial ] ## Synonyms - * splenial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000573] + * splenial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000573 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0012135.md b/md/UBERON/35/UBERON_0012135.md index 9140271a71..3febe6d488 100644 --- a/md/UBERON/35/UBERON_0012135.md +++ b/md/UBERON/35/UBERON_0012135.md @@ -7,8 +7,8 @@ ## Synonyms - * prepollex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000852] - * cartilago pre-pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000852] + * prepollex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000852 ] + * cartilago pre-pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000852 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0012335.md b/md/UBERON/35/UBERON_0012335.md index 4d01bc725a..b0656ec8c6 100644 --- a/md/UBERON/35/UBERON_0012335.md +++ b/md/UBERON/35/UBERON_0012335.md @@ -6,7 +6,7 @@ ## Synonyms - * bursa podotrochlearis manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/bursa+podotrochlearis+manus] + * bursa podotrochlearis manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/bursa+podotrochlearis+manus ] * navicular bursa of forelimb ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [navicular bursa](../../UBERON/34/UBERON_0012334.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012335 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0013135.md b/md/UBERON/35/UBERON_0013135.md index 1eea753c8e..4a02a00174 100644 --- a/md/UBERON/35/UBERON_0013135.md +++ b/md/UBERON/35/UBERON_0013135.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013135 * *Label* = interdental plate - * *Definition* = The interdental plate refers to the bone-filled mesial-distal region between the teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interdental_plate] + * *Definition* = The interdental plate refers to the bone-filled mesial-distal region between the teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interdental_plate ] * *Comment* = Taxon notes: In paleobiology, the presence or absence of the interdental plate can determine the place of an animal in the evolutionary scale, and paleontologists use the interdental plate when trying to classify a new specimen. Thecodont reptiles and theropod dinosaur fossils have an interdental plate, whereas acrodont reptiles such as Sphenodontia do not.[3] Its presence in Archaeopteryx, an extinct avian, resulted in the proposal of the dinosaur-bird connection[WP] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diastema](../../UBERON/11/UBERON_0012111.md) and [zone of bone organ](../../UBERON/13/UBERON_0005913.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013135 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0013235.md b/md/UBERON/35/UBERON_0013235.md index cf1a107b53..c290c9aa8d 100644 --- a/md/UBERON/35/UBERON_0013235.md +++ b/md/UBERON/35/UBERON_0013235.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013235 * *Label* = ventrum - * *Definition* = The ventral part of an animal. [cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = The ventral part of an animal. [cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] ## Synonyms - * front of body proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:259204] + * front of body proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:259204 ] * ventral part of organism * ventral region of organism * front @@ -33,8 +33,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ventral - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013235 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0013535.md b/md/UBERON/35/UBERON_0013535.md index 85093f454b..ffbebb42a5 100644 --- a/md/UBERON/35/UBERON_0013535.md +++ b/md/UBERON/35/UBERON_0013535.md @@ -6,24 +6,24 @@ ## Synonyms - * B09-4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1735] - * Brodmann (1909) area 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1735] - * Brodmann area 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68600] - * Brodmann area 4, gigantopyramidal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1735] - * Brodmann's area 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68600] - * Giant pyramidal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68600] - * area 4 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68600] - * area 4 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1735] - * area gigantopyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1735] - * B09-4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1735[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 4 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1014] + * B09-4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1735 ] + * Brodmann (1909) area 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1735 ] + * Brodmann area 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68600 ] + * Brodmann area 4, gigantopyramidal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1735 ] + * Brodmann's area 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68600 ] + * Giant pyramidal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68600 ] + * area 4 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68600 ] + * area 4 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1735 ] + * area gigantopyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1735 ] + * B09-4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1735, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 4 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1014 ] ## Cross-references * FMA:68600 * NIF_GrossAnatomy:birnlex_1735 - * NeuroNames:1014 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1735] - * UMLS:C1272526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1735] + * NeuroNames:1014 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1735 ] + * UMLS:C1272526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1735 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013535 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0013635.md b/md/UBERON/35/UBERON_0013635.md index 07ef75a77a..eba59a0069 100644 --- a/md/UBERON/35/UBERON_0013635.md +++ b/md/UBERON/35/UBERON_0013635.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0014635.md b/md/UBERON/35/UBERON_0014635.md index 6c453862c5..dac555d4bb 100644 --- a/md/UBERON/35/UBERON_0014635.md +++ b/md/UBERON/35/UBERON_0014635.md @@ -6,14 +6,14 @@ ## Synonyms - * dorsal nerve root of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_964[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * posterior nerve root of cervical spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_964] + * dorsal nerve root of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_964, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * posterior nerve root of cervical spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_964 ] ## Cross-references * NIF_GrossAnatomy:birnlex_964 * SCTID:175023008 - * UMLS:C1278751 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_964] + * UMLS:C1278751 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_964 ] ## Subsets @@ -22,19 +22,20 @@ * [dorsal root of spinal cord](../../UBERON/61/UBERON_0002261.md) * [root of cervical nerve](../../UBERON/32/UBERON_0009632.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [dorsal root of spinal cord](../../UBERON/61/UBERON_0002261.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014635 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0014735.md b/md/UBERON/35/UBERON_0014735.md index 9bdce5ad02..fd93420d31 100644 --- a/md/UBERON/35/UBERON_0014735.md +++ b/md/UBERON/35/UBERON_0014735.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014735 * *Label* = paleocortex - * *Definition* = Paleocortex is a type of cortical tissue that consists of either four or five cortical laminae (layers of neuronal cell bodies). It has fewer laminae than neocortex, which has six, but more than archicortex, which has three. Paleocortex, along with archicortex and periallocortex, is a type of allocortex. Because the number of laminae that compose a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, paleocortex is thought to be an intermediate between neocortex and archicortex in both aspects. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paleocortex] + * *Definition* = Paleocortex is a type of cortical tissue that consists of either four or five cortical laminae (layers of neuronal cell bodies). It has fewer laminae than neocortex, which has six, but more than archicortex, which has three. Paleocortex, along with archicortex and periallocortex, is a type of allocortex. Because the number of laminae that compose a type of cortical tissue seems to be directly proportional to both the information-processing capabilities of that tissue and its phylogenetic age, paleocortex is thought to be an intermediate between neocortex and archicortex in both aspects. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paleocortex ] * *Comment* = Location notes: Paleocortex is present in the parahippocampal gyrus,[1] olfactory bulb, accessory olfactory bulb, olfactory tubercle, piriform cortex, periamygdalar area,[2] anterior olfactory nucleus, anterior perforated substance, and prepyriform area[WP] ## Synonyms - * paleocortex (Zilles) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2336] - * paleocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2336] - * paleokortikale Regionen@de [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2336] + * paleocortex (Zilles) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2336 ] + * paleocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2336 ] + * paleokortikale Regionen@de [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2336 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014735 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0014835.md b/md/UBERON/35/UBERON_0014835.md index 68e236313a..e0ab92f445 100644 --- a/md/UBERON/35/UBERON_0014835.md +++ b/md/UBERON/35/UBERON_0014835.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014835 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0014935.md b/md/UBERON/35/UBERON_0014935.md index d181d65059..8a26178862 100644 --- a/md/UBERON/35/UBERON_0014935.md +++ b/md/UBERON/35/UBERON_0014935.md @@ -7,8 +7,8 @@ ## Synonyms - * MZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * cerebral cortex marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:32713] + * MZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * cerebral cortex marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:32713 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014935 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_0015035.md b/md/UBERON/35/UBERON_0015035.md index 458454dccb..b90d7e0fb5 100644 --- a/md/UBERON/35/UBERON_0015035.md +++ b/md/UBERON/35/UBERON_0015035.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015035 * *Label* = pedal digit 5 phalanx endochondral element - * *Definition* = A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 5 phalanx element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 5 phalanx skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 5 phalanx element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 5 phalanx skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) and [phalanx endochondral element](../../UBERON/23/UBERON_0015023.md) + * [pedal digit 5 phalanx cartilage element](../../UBERON/84/UBERON_0010684.md)or[pedal digit 5 phalanx pre-cartilage condensation](../../UBERON/84/UBERON_0010584.md)or[pedal digit 5 phalanx](../../UBERON/63/UBERON_0003863.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015035 + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2000235.md b/md/UBERON/35/UBERON_2000235.md index ee18711565..1012c94a4d 100644 --- a/md/UBERON/35/UBERON_2000235.md +++ b/md/UBERON/35/UBERON_2000235.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2000335.md b/md/UBERON/35/UBERON_2000335.md index 0c0558d761..8e3d2c9195 100644 --- a/md/UBERON/35/UBERON_2000335.md +++ b/md/UBERON/35/UBERON_2000335.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2000635.md b/md/UBERON/35/UBERON_2000635.md index 5a50dec19f..cda37a4b4c 100644 --- a/md/UBERON/35/UBERON_2000635.md +++ b/md/UBERON/35/UBERON_2000635.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2000735.md b/md/UBERON/35/UBERON_2000735.md index 0e41e4db54..f6ddd68e20 100644 --- a/md/UBERON/35/UBERON_2000735.md +++ b/md/UBERON/35/UBERON_2000735.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000735 * *Label* = hemal postzygapophysis - * *Definition* = Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * haemal postzygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000735] - * hemal postygopophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000735] - * hemal postzygapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000735[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * haemal postzygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000735 ] + * hemal postygopophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000735 ] + * hemal postzygapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000735, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2000835.md b/md/UBERON/35/UBERON_2000835.md index 675901b98f..351412ef0a 100644 --- a/md/UBERON/35/UBERON_2000835.md +++ b/md/UBERON/35/UBERON_2000835.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000835 * *Label* = sclerotome somite 28 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001235.md b/md/UBERON/35/UBERON_2001235.md index d9e186ec0c..3ceaeded35 100644 --- a/md/UBERON/35/UBERON_2001235.md +++ b/md/UBERON/35/UBERON_2001235.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001235 * *Label* = hypobranchial 3 bone - * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. Develops in hypobranchial 3 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001335.md b/md/UBERON/35/UBERON_2001335.md index d4b5edc3f0..25a84d6ee6 100644 --- a/md/UBERON/35/UBERON_2001335.md +++ b/md/UBERON/35/UBERON_2001335.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001335 * *Label* = supradorsal - * *Definition* = Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001535.md b/md/UBERON/35/UBERON_2001535.md index 4a825cedb9..dfe24d7d5a 100644 --- a/md/UBERON/35/UBERON_2001535.md +++ b/md/UBERON/35/UBERON_2001535.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001635.md b/md/UBERON/35/UBERON_2001635.md index c2e18840a1..1d97c5764f 100644 --- a/md/UBERON/35/UBERON_2001635.md +++ b/md/UBERON/35/UBERON_2001635.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001635 * *Label* = pharyngobranchial 1 bone - * *Definition* = Most anterior pharyngobranchial bone, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Most anterior pharyngobranchial bone, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 1 bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001635] + * infrapharyngobranchial 1 bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001635 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001735.md b/md/UBERON/35/UBERON_2001735.md index cd13b7d9a8..ed7ca0700a 100644 --- a/md/UBERON/35/UBERON_2001735.md +++ b/md/UBERON/35/UBERON_2001735.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001735 * *Label* = scapular foramen - * *Definition* = Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Weitzman 1962. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2001935.md b/md/UBERON/35/UBERON_2001935.md index ea092f3ede..5ceb8a33e7 100644 --- a/md/UBERON/35/UBERON_2001935.md +++ b/md/UBERON/35/UBERON_2001935.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001935 * *Label* = oral disk - * *Definition* = Lip that is expanded to form a broad, rounded cup around the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lip that is expanded to form a broad, rounded cup around the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2002235.md b/md/UBERON/35/UBERON_2002235.md index 97e0662c16..a337ec9d06 100644 --- a/md/UBERON/35/UBERON_2002235.md +++ b/md/UBERON/35/UBERON_2002235.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2005135.md b/md/UBERON/35/UBERON_2005135.md index 5f5da20f01..351e926b27 100644 --- a/md/UBERON/35/UBERON_2005135.md +++ b/md/UBERON/35/UBERON_2005135.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005135 * *Label* = primary dental epithelium - * *Definition* = Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * pharyngeal tooth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005135] - * primary tooth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005135] + * pharyngeal tooth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005135 ] + * primary tooth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005135 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_2005235.md b/md/UBERON/35/UBERON_2005235.md index 3eca66db05..e79c66ef88 100644 --- a/md/UBERON/35/UBERON_2005235.md +++ b/md/UBERON/35/UBERON_2005235.md @@ -7,7 +7,7 @@ ## Synonyms - * unipolar commissural descending interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005235] + * unipolar commissural descending interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005235 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/35/UBERON_2007035.md b/md/UBERON/35/UBERON_2007035.md index 19ad422365..50279be2e3 100644 --- a/md/UBERON/35/UBERON_2007035.md +++ b/md/UBERON/35/UBERON_2007035.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_3000735.md b/md/UBERON/35/UBERON_3000735.md index 7385584257..10919e5f6e 100644 --- a/md/UBERON/35/UBERON_3000735.md +++ b/md/UBERON/35/UBERON_3000735.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000735 * *Label* = mid-dorsal keel - * *Definition* = Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_2002] + * *Definition* = Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_2002 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_3000935.md b/md/UBERON/35/UBERON_3000935.md index 9632da27fd..88fed9205d 100644 --- a/md/UBERON/35/UBERON_3000935.md +++ b/md/UBERON/35/UBERON_3000935.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000935 * *Label* = obsolete scapular area - * *Definition* = Dorso-lateral portion of the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorso-lateral portion of the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pars scapularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000935] - * scapula et adscapulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000935] - * scapula-suprascapula area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000935] - * scapulum et episcapulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000935] + * pars scapularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000935 ] + * scapula et adscapulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000935 ] + * scapula-suprascapula area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000935 ] + * scapulum et episcapulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000935 ] ## Cross-references @@ -32,8 +32,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0006849 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/35/UBERON_3010235.md b/md/UBERON/35/UBERON_3010235.md index db517c5a4e..4f718ad771 100644 --- a/md/UBERON/35/UBERON_3010235.md +++ b/md/UBERON/35/UBERON_3010235.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_3010635.md b/md/UBERON/35/UBERON_3010635.md index d6f72fda6b..8d353bbaa0 100644 --- a/md/UBERON/35/UBERON_3010635.md +++ b/md/UBERON/35/UBERON_3010635.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010635 * *Label* = obsolete goblet cell - * *Definition* = A mucous surface cell type known in tadpoles of Xenopus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A mucous surface cell type known in tadpoles of Xenopus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000160 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/35/UBERON_3010735.md b/md/UBERON/35/UBERON_3010735.md index 0caf631a65..1fabc17e8a 100644 --- a/md/UBERON/35/UBERON_3010735.md +++ b/md/UBERON/35/UBERON_3010735.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010735 * *Label* = ramus anterior of CN VIII - * *Definition* = Formed by fibers from the anterior semicircular canal and sacculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Formed by fibers from the anterior semicircular canal and sacculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_4200135.md b/md/UBERON/35/UBERON_4200135.md index bce42efa89..85d137b9db 100644 --- a/md/UBERON/35/UBERON_4200135.md +++ b/md/UBERON/35/UBERON_4200135.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/35/UBERON_4300035.md b/md/UBERON/35/UBERON_4300035.md index 6955ab6b9c..42ac7f79c0 100644 --- a/md/UBERON/35/UBERON_4300035.md +++ b/md/UBERON/35/UBERON_4300035.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0000036.md b/md/UBERON/36/UBERON_0000036.md index 760a5c2572..f52ffa015f 100644 --- a/md/UBERON/36/UBERON_0000036.md +++ b/md/UBERON/36/UBERON_0000036.md @@ -6,12 +6,12 @@ ## Synonyms - * antral follice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001547] + * antral follice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001547 ] * antral follicle of ovary - * antral ovarian follice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001547] + * antral ovarian follice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001547 ] * folliculus ovaricus secondarius - * ovary antral follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002909] - * ovary secondary follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002908] + * ovary antral follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002909 ] + * ovary secondary follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002908 ] * secondary follicle of ovary * secondary egg follicle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0000936.md b/md/UBERON/36/UBERON_0000936.md index a6ec6d1832..13e37ba611 100644 --- a/md/UBERON/36/UBERON_0000936.md +++ b/md/UBERON/36/UBERON_0000936.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000936 * *Label* = posterior commissure - * *Definition* = Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_commissure[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000320] + * *Definition* = Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP]. Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_commissure, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000320 ] * *Comment* = AO notes: part_of brainstem in MA; midbrain tectum in NIF. Editor notes: add connects relationships and check these outside mammalia ## Synonyms - * caudal commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62072[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000320] - * epithalamic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62072] - * commissura epithalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:484[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura epithalamica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:484[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior commissure (Lieutaud) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:484] + * caudal commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62072, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000320 ] + * epithalamic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62072 ] + * commissura epithalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:484, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura epithalamica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:484, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior commissure (Lieutaud) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:484 ] ## Cross-references @@ -23,10 +23,10 @@ * FMA:62072 * MA:0002743 * NIF_GrossAnatomy:birnlex_1026 - * NeuroNames:484 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1026] + * NeuroNames:484 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1026 ] * TAO:0000320 - * UMLS:C0152327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1026] - * UMLS:C0152327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Commissure] + * UMLS:C0152327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1026 ] + * UMLS:C0152327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Commissure ] * Wikipedia:Posterior_commissure * ZFA:0000320 * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [nucleus of pretectal area](../../UBERON/94/UBERON_0002994.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001136.md b/md/UBERON/36/UBERON_0001136.md index d7ce6211b9..3c37430913 100644 --- a/md/UBERON/36/UBERON_0001136.md +++ b/md/UBERON/36/UBERON_0001136.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001136 * *Label* = mesothelium - * *Definition* = Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14074[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesothelium] + * *Definition* = Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14074, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesothelium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -25,7 +25,7 @@ * FMA:14074 * MA:0000565 * SCTID:361918002 - * UMLS:C0086610 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesothelium] + * UMLS:C0086610 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesothelium ] * Wikipedia:Mesothelium * http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg * ncithesaurus:Mesothelium @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) and [part_of](../../BFO/50/BFO_0000050.md) some [serous membrane](../../UBERON/42/UBERON_0000042.md) and [simple squamous epithelium](../../UBERON/87/UBERON_0000487.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001236.md b/md/UBERON/36/UBERON_0001236.md index 1335a49ab3..fed97931f3 100644 --- a/md/UBERON/36/UBERON_0001236.md +++ b/md/UBERON/36/UBERON_0001236.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001236 * *Label* = adrenal medulla - * *Definition* = The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. It is the innermost part of the adrenal gland, consisting of cells that secrete epinephrine, norepinephrine, and a small amount of dopamine in response to stimulation by sympathetic preganglionic neurons. Composed mainly of hormone-producing chromaffin cells, the adrenal medulla is the principal site of the conversion of the amino acid tyrosine into the catecholamines adrenaline (epinephrine), noradrenaline (norepinephrine), and dopamine[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_medulla] + * *Definition* = The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. It is the innermost part of the adrenal gland, consisting of cells that secrete epinephrine, norepinephrine, and a small amount of dopamine in response to stimulation by sympathetic preganglionic neurons. Composed mainly of hormone-producing chromaffin cells, the adrenal medulla is the principal site of the conversion of the amino acid tyrosine into the catecholamines adrenaline (epinephrine), noradrenaline (norepinephrine), and dopamine[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_medulla ] ## Synonyms * adrenal gland medulla * medulla (glandula suprarenalis) - * medulla glandulae suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15633[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medulla of adrenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * medulla glandulae suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15633, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medulla of adrenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * medulla of suprarenal gland * suprarenal medulla * adrenal central medulla * chromaffin cells - * medulla of glandula suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000049] + * medulla of glandula suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000049 ] ## Cross-references @@ -31,7 +31,7 @@ * MAT:0000495 * MESH:A06.224.161 * SCTID:362585001 - * UMLS:C0001629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adrenal_Medulla] + * UMLS:C0001629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adrenal_Medulla ] * VHOG:0001378 * Wikipedia:Adrenal_medulla * XAO:0000166 @@ -58,7 +58,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [adrenal gland](../../UBERON/69/UBERON_0002369.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues (medulla), but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001336.md b/md/UBERON/36/UBERON_0001336.md index 7b263ed64c..7b89b2878c 100644 --- a/md/UBERON/36/UBERON_0001336.md +++ b/md/UBERON/36/UBERON_0001336.md @@ -10,8 +10,8 @@ * intermediate part of urethra * intermediate urethra * membranous part of urethra - * membranous urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002647[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * pars intermedia urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19674[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * membranous urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002647, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * pars intermedia urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19674, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pars membranacea (urethrae) ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001436.md b/md/UBERON/36/UBERON_0001436.md index 7b67bf23e0..321e75788c 100644 --- a/md/UBERON/36/UBERON_0001436.md +++ b/md/UBERON/36/UBERON_0001436.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001436 * *Label* = phalanx of manus - * *Definition* = A phalanx that is part of a forelimb autopod[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Phalanges_of_the_hand[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A phalanx that is part of a forelimb autopod[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Phalanges_of_the_hand, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * digital bone of manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000306] + * digital bone of manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000306 ] * manual phalanx - * phalanx of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23914] + * phalanx of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23914 ] * phalanx of fore digit * phalanx of hand - * phalanx of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * phalanx of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * phalanx of manual digit - * bone of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23914] - * phalanges of fore digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000947[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * bone of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23914 ] + * phalanges of fore digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000947, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0000306 * SCTID:181976001 * SCTID:361100001 - * UMLS:C0223792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Phalanx] + * UMLS:C0223792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Phalanx ] * Wikipedia:Phalanges_of_the_hand * http://mbe.oxfordjournals.org/content/26/3/613/F1.large.jpg * ncithesaurus:Hand_Phalanx @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001536.md b/md/UBERON/36/UBERON_0001536.md index a13229e551..efc46ffc8d 100644 --- a/md/UBERON/36/UBERON_0001536.md +++ b/md/UBERON/36/UBERON_0001536.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001536 * *Label* = left common carotid artery plus branches - * *Definition* = In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_common_carotid_artery] + * *Definition* = In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_common_carotid_artery ] * *Comment* = Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches ## Synonyms - * left common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001927] - * trunk of left common carotid tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4058] - * left common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4058] + * left common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001927 ] + * trunk of left common carotid tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4058 ] + * left common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4058 ] ## Cross-references @@ -19,7 +19,7 @@ * OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA * SCTID:362043008 - * UMLS:C0226087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Common_Carotid_Artery] + * UMLS:C0226087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Common_Carotid_Artery ] * Wikipedia:Left_common_carotid_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png * ncithesaurus:Left_Common_Carotid_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001636.md b/md/UBERON/36/UBERON_0001636.md index f6c1965ac6..fb006a52c7 100644 --- a/md/UBERON/36/UBERON_0001636.md +++ b/md/UBERON/36/UBERON_0001636.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001636 * *Label* = posterior cerebral artery - * *Definition* = The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cerebral_artery] + * *Definition* = The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cerebral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria cerebri posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cerebral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria cerebri posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cerebral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.228.700 * OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA * SCTID:181313007 - * UMLS:C0149576 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Cerebral_Artery] + * UMLS:C0149576 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Cerebral_Artery ] * Wikipedia:Posterior_cerebral_artery * http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001736.md b/md/UBERON/36/UBERON_0001736.md index e0f3530fc2..18995667ec 100644 --- a/md/UBERON/36/UBERON_0001736.md +++ b/md/UBERON/36/UBERON_0001736.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001736 * *Label* = submandibular gland - * *Definition* = The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_gland] + * *Definition* = The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_gland ] * *Comment* = lobular, sexually dimorphic in mouse ## Synonyms * submandibular salivary gland - * glandula submandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula submandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * submaxillary gland ## Cross-references @@ -24,7 +24,7 @@ * MA:0001589 * MESH:A10.336.779.812 * SCTID:181235001 - * UMLS:C0038556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submandibular_Gland] + * UMLS:C0038556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submandibular_Gland ] * VHOG:0000364 * Wikipedia:Submandibular_gland * http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Either of two major salivary glands situated in the neck near the lower edge of each side of the mandible and emptying into the submandibular duct. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The most common oral glands in mammals are the salivary glands. There are usually three primary pairs of salivary glands, named for their approximate positions: mandibular (submandibular or submaxillary), sublingual, and parotid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001836.md b/md/UBERON/36/UBERON_0001836.md index 78bcb99aa7..82ba6e3ec8 100644 --- a/md/UBERON/36/UBERON_0001836.md +++ b/md/UBERON/36/UBERON_0001836.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001836 * *Label* = saliva - * *Definition* = In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0046541[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saliva] + * *Definition* = In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0046541, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saliva ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * salivary gland secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59862] - * sailva normalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saliva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * saliva atomaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saliva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * saliva molecularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saliva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * salivary gland secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59862 ] + * sailva normalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saliva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * saliva atomaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saliva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * saliva molecularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saliva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MAT:0000444 * MESH:A12.200.666 * OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA - * UMLS:C0036087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Saliva] + * UMLS:C0036087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Saliva ] * Wikipedia:Saliva * galen:Saliva * ncithesaurus:Saliva @@ -47,8 +47,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = salivary - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0001936.md b/md/UBERON/36/UBERON_0001936.md index dd41988aaf..eb70b64cdb 100644 --- a/md/UBERON/36/UBERON_0001936.md +++ b/md/UBERON/36/UBERON_0001936.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001936 * *Label* = tuberomammillary nucleus - * *Definition* = The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tuberomammillary_nucleus] + * *Definition* = The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tuberomammillary_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * TM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1271] - * caudal magnocellular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1271] - * mammilloinfundibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62335] - * mammiloinfundibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1271] - * tuberomammillary hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1271] - * tuberomammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1271] - * TM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1271[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus tuberomamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tuberomamillaris hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tubero-mamillary area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] - * tuberomamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100237[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DUBIOUS] - * tuberomammillary nucleus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] - * ventral tuberomammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:427] + * TM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1271 ] + * caudal magnocellular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1271 ] + * mammilloinfundibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62335 ] + * mammiloinfundibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1271 ] + * tuberomammillary hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1271 ] + * tuberomammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1271 ] + * TM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1271, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus tuberomamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tuberomamillaris hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tubero-mamillary area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] + * tuberomamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100237, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DUBIOUS ] + * tuberomammillary nucleus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] + * ventral tuberomammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:427 ] ## Cross-references @@ -30,10 +30,10 @@ * FMA:62335 * MA:0000853 * NIF_GrossAnatomy:birnlex_1271 - * NeuroNames:427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1271] + * NeuroNames:427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1271 ] * SCTID:369122006 - * UMLS:C0228377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1271] - * UMLS:C1289549 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1271] + * UMLS:C0228377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1271 ] + * UMLS:C1289549 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1271 ] * Wikipedia:Tuberomammillary_nucleus ## Subsets @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002036.md b/md/UBERON/36/UBERON_0002036.md index e30b2ee2b3..43084fc21a 100644 --- a/md/UBERON/36/UBERON_0002036.md +++ b/md/UBERON/36/UBERON_0002036.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002036 * *Label* = striated muscle tissue - * *Definition* = Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67905[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Striated_muscle] + * *Definition* = Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67905, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Striated_muscle ] ## Synonyms @@ -18,7 +18,7 @@ * FMA:67905 * MA:0002438 * OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA - * UMLS:C1331262 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Striated_Muscle_Tissue] + * UMLS:C1331262 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Striated_Muscle_Tissue ] * WBbt:0005779 * Wikipedia:Striated_muscle * galen:StriatedMuscle @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [striated muscle cell](../../CL/37/CL_0000737.md) and [muscle tissue](../../UBERON/85/UBERON_0002385.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Voluntary muscle tissue arranged in bundles of fibers.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002136.md b/md/UBERON/36/UBERON_0002136.md index f724dd23b2..d509e67bc9 100644 --- a/md/UBERON/36/UBERON_0002136.md +++ b/md/UBERON/36/UBERON_0002136.md @@ -10,9 +10,9 @@ * dentate gyrus hilus * field CA4 of hippocampal formation * CA4 - * hilus gyri dentati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:181[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hilus of the dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:181] - * region CA4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:181] + * hilus gyri dentati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:181, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hilus of the dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:181 ] + * region CA4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:181 ] ## Cross-references @@ -21,8 +21,8 @@ * FMA:72358 * MA:0000947 * NIF_GrossAnatomy:birnlex_1482 - * NeuroNames:181 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1482] - * UMLS:C1134421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1482] + * NeuroNames:181 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1482 ] + * UMLS:C1134421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1482 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002236.md b/md/UBERON/36/UBERON_0002236.md index 1a194ad833..d12a0daf8c 100644 --- a/md/UBERON/36/UBERON_0002236.md +++ b/md/UBERON/36/UBERON_0002236.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002236 * *Label* = costal cartilage - * *Definition* = The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_cartilage] + * *Definition* = The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_cartilage ] ## Synonyms - * cartilagines costales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costal_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilago costalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001721] - * sternal cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001721] + * cartilagines costales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costal_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cartilago costalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001721 ] + * sternal cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001721 ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0000106 * OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA * SCTID:244703004 - * UMLS:C0222787 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Costal_Cartilage] + * UMLS:C0222787 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Costal_Cartilage ] * Wikipedia:Costal_cartilage * http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002336.md b/md/UBERON/36/UBERON_0002336.md index ee534143ea..73c2103fc3 100644 --- a/md/UBERON/36/UBERON_0002336.md +++ b/md/UBERON/36/UBERON_0002336.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002336 * *Label* = corpus callosum - * *Definition* = A thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_callosum] + * *Definition* = A thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_callosum ] ## Synonyms @@ -27,8 +27,8 @@ * NeuroNames:191 * OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA * SCTID:362354006 - * UMLS:C0010090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1087] - * UMLS:C0010090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpus_Callosum] + * UMLS:C0010090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1087 ] + * UMLS:C0010090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpus_Callosum ] * VHOG:0001608 * Wikipedia:Corpus_callosum * http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In addition to the anterior commissure, placental mammals have a phylogenetically new forebrain commissure, the corpus callosum, which primarily interconnects the neocortex of the cerebral hemispheres.[well established][VHOG] * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The corpus callosum is found only in placental mammals. other groups do have other brain structures that allow for communication between the two hemispheres, such as the anterior commissure, which serves as the primary mode of interhemispheric communication in marsupials. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002436.md b/md/UBERON/36/UBERON_0002436.md index ab9ff363db..4ed7d5084e 100644 --- a/md/UBERON/36/UBERON_0002436.md +++ b/md/UBERON/36/UBERON_0002436.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002436 * *Label* = primary visual cortex - * *Definition* = The term area 17 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BrainInfo:2102[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] + * *Definition* = The term area 17 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BrainInfo:2102, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] ## Synonyms - * BA17 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1748] - * Brodmann area 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] - * Brodmann area 17, striate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1748] - * area 17 of brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1748] - * b09-17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1748] - * striate cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:236871] - * B09-17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1748[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * BA17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] - * BA17 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann area 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] + * BA17 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1748 ] + * Brodmann area 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] + * Brodmann area 17, striate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1748 ] + * area 17 of brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1748 ] + * b09-17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1748 ] + * striate cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:236871 ] + * B09-17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1748, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * BA17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] + * BA17 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann area 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] * V1 - * area 17 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] + * area 17 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] * area striata - * calcarine cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BrainInfo:2102] - * nerve X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:702] - * occipital visual neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GEO:GSM336648] - * primary visual area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VISp] - * striate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:17] - * visual area V1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004703] - * visual association area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] - * visual association cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visual_cortex] + * calcarine cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BrainInfo:2102 ] + * nerve X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:702 ] + * occipital visual neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GEO:GSM336648 ] + * primary visual area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VISp ] + * striate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:17 ] + * visual area V1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004703 ] + * visual association area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] + * visual association cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visual_cortex ] ## Cross-references @@ -41,10 +41,10 @@ * MA:0000914 * NIF_GrossAnatomy:birnlex_1748 * NIF_GrossAnatomy:nlx_143552 - * NeuroNames:702 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1748] + * NeuroNames:702 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1748 ] * SCTID:384772005 - * UMLS:C0038446 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Visual_Cortex] - * UMLS:C1272535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1748] + * UMLS:C0038446 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Visual_Cortex ] + * UMLS:C1272535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1748 ] * Wikipedia:Visual_cortex * http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png @@ -67,8 +67,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002536.md b/md/UBERON/36/UBERON_0002536.md index b7c088ad1e..6dfe4e0750 100644 --- a/md/UBERON/36/UBERON_0002536.md +++ b/md/UBERON/36/UBERON_0002536.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002536 * *Label* = arthropod sensillum - * *Definition* = Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00007152[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensillum] + * *Definition* = Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00007152, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensillum ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms - * sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00007152[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HAO:0000933] + * sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00007152, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HAO:0000933 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002636.md b/md/UBERON/36/UBERON_0002636.md index d0932c1b8c..8c81d54bc8 100644 --- a/md/UBERON/36/UBERON_0002636.md +++ b/md/UBERON/36/UBERON_0002636.md @@ -6,12 +6,12 @@ ## Synonyms - * lateral pulvinar nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62181] - * nucleus pulvinaris lateralis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1228] - * nucleus pulvinaris lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1228] - * nucleus pulvinaris lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1228] - * nucleus pulvinaris thalami, pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1228] - * LPul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1228[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * lateral pulvinar nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62181 ] + * nucleus pulvinaris lateralis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1228 ] + * nucleus pulvinaris lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1228 ] + * nucleus pulvinaris lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1228 ] + * nucleus pulvinaris thalami, pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1228 ] + * LPul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1228, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -19,8 +19,8 @@ * BM:Die-Th-Pl-Pll * FMA:62181 * NIF_GrossAnatomy:birnlex_1228 - * NeuroNames:330 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1228] - * UMLS:C0228345 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1228] + * NeuroNames:330 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1228 ] + * UMLS:C0228345 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1228 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002736.md b/md/UBERON/36/UBERON_0002736.md index 92fb5d1386..fa4db9c76e 100644 --- a/md/UBERON/36/UBERON_0002736.md +++ b/md/UBERON/36/UBERON_0002736.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002736 * *Label* = lateral nuclear group - * *Definition* = The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_nuclear_group] + * *Definition* = The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_nuclear_group ] ## Synonyms - * lateral group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1537] - * lateral nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62174] - * lateral nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62174] - * lateral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62174] - * lateral thalamic group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000862] - * lateral thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62174] - * lateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1537] - * nuclei laterales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1537] - * nucleus lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1537] - * LNG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1537[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LAT] - * lateral thalamic nuclear region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LTh] + * lateral group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1537 ] + * lateral nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62174 ] + * lateral nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62174 ] + * lateral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62174 ] + * lateral thalamic group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000862 ] + * lateral thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62174 ] + * lateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1537 ] + * nuclei laterales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1537 ] + * nucleus lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1537 ] + * LNG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1537, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LAT ] + * lateral thalamic nuclear region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LTh ] ## Cross-references @@ -33,7 +33,7 @@ * MA:0000862 * MESH:A08.186.211.730.385.826.701.485 * NIF_GrossAnatomy:birnlex_1537 - * NeuroNames:325 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1537] + * NeuroNames:325 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1537 ] * SCTID:279126006 * Wikipedia:Lateral_nuclear_group * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002836.md b/md/UBERON/36/UBERON_0002836.md index e6224e6424..094a0b443c 100644 --- a/md/UBERON/36/UBERON_0002836.md +++ b/md/UBERON/36/UBERON_0002836.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002836 * *Label* = lumbar dorsal root ganglion - * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006404] + * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006404 ] ## Synonyms - * lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6007] - * lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6007] + * lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6007 ] + * lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6007 ] ## Cross-references * FMA:6007 * NIF_GrossAnatomy:birnlex_2601 * SCTID:278327000 - * UMLS:C0457468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2601] + * UMLS:C0457468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2601 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0002936.md b/md/UBERON/36/UBERON_0002936.md index 413f9890b7..2b99c9f7ad 100644 --- a/md/UBERON/36/UBERON_0002936.md +++ b/md/UBERON/36/UBERON_0002936.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002936 * *Label* = magnocellular part of red nucleus - * *Definition* = The magnocellular red nucleus (RNm) is located in the rostral midbrain and is involved in motor coordination. Together with the parvocellular red nucleus, it makes up the red nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Magnocellular_red_nucleus] + * *Definition* = The magnocellular red nucleus (RNm) is located in the rostral midbrain and is involved in motor coordination. Together with the parvocellular red nucleus, it makes up the red nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Magnocellular_red_nucleus ] ## Synonyms - * paleoruber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72431] - * red nucleus, magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72431] - * RMC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_720[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * magnocellular part of the red nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:507] - * nucleus ruber magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber, Pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * palaeorubrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars magnocellularis (ruber) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * red nucleus magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RMC] - * red nucleus magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RNmc] + * paleoruber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72431 ] + * red nucleus, magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72431 ] + * RMC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_720, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * magnocellular part of the red nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:507 ] + * nucleus ruber magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber, Pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * palaeorubrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars magnocellularis (ruber) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * red nucleus magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RMC ] + * red nucleus magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RNmc ] ## Cross-references @@ -24,8 +24,8 @@ * BAMS:RNmc * FMA:72431 * NIF_GrossAnatomy:birnlex_720 - * NeuroNames:507 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_720] - * UMLS:C0175402 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_720] + * NeuroNames:507 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_720 ] + * UMLS:C0175402 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_720 ] * Wikipedia:Magnocellular_red_nucleus ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003036.md b/md/UBERON/36/UBERON_0003036.md index 86aeeb9fd8..2d17d73257 100644 --- a/md/UBERON/36/UBERON_0003036.md +++ b/md/UBERON/36/UBERON_0003036.md @@ -6,13 +6,13 @@ ## Synonyms - * central lateral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62170] - * central lateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62170] - * centrolateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62170] - * nucleus centralis lateralis of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_961] - * nucleus centralis lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_961] - * CL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_961[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * central lateral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:320] + * central lateral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62170 ] + * central lateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62170 ] + * centrolateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62170 ] + * nucleus centralis lateralis of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_961 ] + * nucleus centralis lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_961 ] + * CL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_961, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * central lateral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:320 ] ## Cross-references @@ -23,9 +23,9 @@ * EV:0100205 * FMA:62170 * NIF_GrossAnatomy:birnlex_961 - * NeuroNames:320 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_961] + * NeuroNames:320 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_961 ] * SCTID:279153005 - * UMLS:C0228355 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_961] + * UMLS:C0228355 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_961 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003136.md b/md/UBERON/36/UBERON_0003136.md index c2c759fc06..c59b827c81 100644 --- a/md/UBERON/36/UBERON_0003136.md +++ b/md/UBERON/36/UBERON_0003136.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000002 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000988 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003136 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_0003236.md b/md/UBERON/36/UBERON_0003236.md index ced1a13a90..dfc97f9953 100644 --- a/md/UBERON/36/UBERON_0003236.md +++ b/md/UBERON/36/UBERON_0003236.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003236 * *Label* = epithelium of lower jaw - * *Definition* = An epithelium that is part of a lower jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003336.md b/md/UBERON/36/UBERON_0003336.md index a3f439b224..93dfc621f0 100644 --- a/md/UBERON/36/UBERON_0003336.md +++ b/md/UBERON/36/UBERON_0003336.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003336 * *Label* = serosa of duodenum - * *Definition* = A serous membrane that is part of a duodenum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a duodenum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Histology notes: 1st part serosa, 2nd - 4th adventitia ## Synonyms - * doudenal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14948] - * duodenal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14948] - * duodenum serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * duodenum serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral peritoneum of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14948] + * doudenal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14948 ] + * duodenal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14948 ] + * duodenum serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * duodenum serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral peritoneum of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14948 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003436.md b/md/UBERON/36/UBERON_0003436.md index ed6d102133..f7ead3061c 100644 --- a/md/UBERON/36/UBERON_0003436.md +++ b/md/UBERON/36/UBERON_0003436.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003436 * *Label* = shoulder nerve - * *Definition* = A nerve that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003536.md b/md/UBERON/36/UBERON_0003536.md index a77a23e3fe..ad84582aef 100644 --- a/md/UBERON/36/UBERON_0003536.md +++ b/md/UBERON/36/UBERON_0003536.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003536 * *Label* = right lung alveolar duct - * *Definition* = An alveolar duct that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An alveolar duct that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * alveolar duct of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolar duct of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:19189 * EMAPA:19191 * MA:0001785 - * UMLS:C1709958 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung_Alveolar_Duct] + * UMLS:C1709958 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung_Alveolar_Duct ] * ncithesaurus:Right_Lung_Alveolar_Duct ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [pulmonary alveolar duct](../../UBERON/73/UBERON_0002173.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003636.md b/md/UBERON/36/UBERON_0003636.md index 01c7e6edb2..e5232d21f4 100644 --- a/md/UBERON/36/UBERON_0003636.md +++ b/md/UBERON/36/UBERON_0003636.md @@ -3,39 +3,39 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003636 * *Label* = manual digit 2 phalanx - * *Definition* = A phalanx that is part of a hand digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a hand digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2 nd digit of hand digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd digit of hand long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd digit of hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 2 nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 2 nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001390] - * index finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35480] - * long bone of digit of 2 nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of 2 nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 2 nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 2 nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35480] - * phalanx of manual digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 2 nd digit of hand digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd digit of hand long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd digit of hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 2 nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 2 nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001390 ] + * index finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35480 ] + * long bone of digit of 2 nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of 2 nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 2 nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 2 nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35480 ] + * phalanx of manual digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -43,7 +43,7 @@ * FMA:35480 * MA:0001390 * SCTID:361783009 - * UMLS:C1708312 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_2_Phalanx] + * UMLS:C1708312 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_2_Phalanx ] * ncithesaurus:Hand_Digit_2_Phalanx ## Subsets @@ -58,15 +58,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003836.md b/md/UBERON/36/UBERON_0003836.md index 8cce07724a..db0c944784 100644 --- a/md/UBERON/36/UBERON_0003836.md +++ b/md/UBERON/36/UBERON_0003836.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003836 * *Label* = abdominal segment skin - * *Definition* = A skin of body that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skin of body that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment of trunk skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdominal segment of trunk skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0003936.md b/md/UBERON/36/UBERON_0003936.md index 05b6facdda..37feba474e 100644 --- a/md/UBERON/36/UBERON_0003936.md +++ b/md/UBERON/36/UBERON_0003936.md @@ -6,9 +6,9 @@ ## Synonyms - * POC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000059] - * post optic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000059] - * post-optic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000059] + * POC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000059 ] + * post optic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000059 ] + * post-optic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000059 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004036.md b/md/UBERON/36/UBERON_0004036.md index a51eecd8f7..00fe429f63 100644 --- a/md/UBERON/36/UBERON_0004036.md +++ b/md/UBERON/36/UBERON_0004036.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004036 * *Label* = obsolete retinal cone cell inner segment - * *Definition* = the retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008448] + * *Definition* = the retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008448 ] * *Comment* = request from GO as subclass of photoreceptor segment ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004036 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_0004136.md b/md/UBERON/36/UBERON_0004136.md index 1eba6daa8b..3c3fcd892b 100644 --- a/md/UBERON/36/UBERON_0004136.md +++ b/md/UBERON/36/UBERON_0004136.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004136 * *Label* = intermediate tubule - * *Definition* = The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072018] + * *Definition* = The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072018 ] * *Comment* = todo - check for applicability across species ## Synonyms * renal intermediate tubule - * tubulus attenuatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17718] + * tubulus attenuatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17718 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004236.md b/md/UBERON/36/UBERON_0004236.md index 6655b38265..0a697af431 100644 --- a/md/UBERON/36/UBERON_0004236.md +++ b/md/UBERON/36/UBERON_0004236.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004236 * *Label* = arteriole smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of an arteriole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of an arteriole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [arteriole](../../UBERON/80/UBERON_0001980.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004336.md b/md/UBERON/36/UBERON_0004336.md index 682727b53c..35f67a2bec 100644 --- a/md/UBERON/36/UBERON_0004336.md +++ b/md/UBERON/36/UBERON_0004336.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004336 * *Label* = proximal phalanx of pedal digit 5 - * *Definition* = A proximal phalanx that is part of a pedal digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5th toe proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth proximal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32621] - * foot digit 5 proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of 5th toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32621] - * proximal phalanx of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32621] - * proximal phalanx of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5th toe proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth proximal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32621 ] + * foot digit 5 proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of 5th toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32621 ] + * proximal phalanx of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32621 ] + * proximal phalanx of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * proximal phalanx of the 5th toe ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004436.md b/md/UBERON/36/UBERON_0004436.md index d32e3886e9..c529742cc8 100644 --- a/md/UBERON/36/UBERON_0004436.md +++ b/md/UBERON/36/UBERON_0004436.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004436 * *Label* = proximal epiphysis of middle phalanx of manual digit 2 - * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of middle phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37502] - * base of middle phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37502] - * base of middle phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37502] - * base of middle phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37502] - * proximal epiphysis of middle phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of middle phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37502 ] + * base of middle phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37502 ] + * base of middle phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37502 ] + * base of middle phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37502 ] + * proximal epiphysis of middle phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of manual digit 2](../../UBERON/20/UBERON_0004320.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004536.md b/md/UBERON/36/UBERON_0004536.md index 03527902bb..70cce002db 100644 --- a/md/UBERON/36/UBERON_0004536.md +++ b/md/UBERON/36/UBERON_0004536.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004536 * *Label* = lymph vasculature - * *Definition* = A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005105] + * *Definition* = A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005105 ] ## Synonyms - * lymphatic trunks and ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63815] + * lymphatic trunks and ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63815 ] * lymphatic vasculature * lymphatic vessel network - * lymphatic vessels set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63815] + * lymphatic vessels set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63815 ] * set of lymphatic vessels - * trunci et ductus lymphatici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63815[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trunci et ductus lymphatici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63815, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [lymph](../../UBERON/91/UBERON_0002391.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004636.md b/md/UBERON/36/UBERON_0004636.md index 053e69132b..a5670e3352 100644 --- a/md/UBERON/36/UBERON_0004636.md +++ b/md/UBERON/36/UBERON_0004636.md @@ -7,9 +7,9 @@ ## Synonyms - * T12 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10081] - * Twelfth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10081] - * twelfth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10081] + * T12 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10081 ] + * Twelfth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10081 ] + * twelfth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10081 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:10081 * MA:0001449 * SCTID:181840003 - * UMLS:C0459957 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T12_Vertebra] + * UMLS:C0459957 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T12_Vertebra ] * ncithesaurus:T12_Vertebra ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004736.md b/md/UBERON/36/UBERON_0004736.md index ef136b508a..f0c185135c 100644 --- a/md/UBERON/36/UBERON_0004736.md +++ b/md/UBERON/36/UBERON_0004736.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004736 * *Label* = metanephric glomerulus - * *Definition* = glomerulus of the mature vertebrate kidney, or metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072224] + * *Definition* = glomerulus of the mature vertebrate kidney, or metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072224 ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0004936.md b/md/UBERON/36/UBERON_0004936.md index d77ab9419b..7f84d4e172 100644 --- a/md/UBERON/36/UBERON_0004936.md +++ b/md/UBERON/36/UBERON_0004936.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004936 * *Label* = submucosa of pyloric antrum - * *Definition* = A submucosa that is part of a pyloric antrum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a pyloric antrum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antrum of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric antrum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric antrum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of antrum of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of stomach pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antrum of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric antrum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric antrum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of antrum of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of stomach pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pyloric antrum](../../UBERON/65/UBERON_0001165.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005036.md b/md/UBERON/36/UBERON_0005036.md index 94144447a7..587da182ad 100644 --- a/md/UBERON/36/UBERON_0005036.md +++ b/md/UBERON/36/UBERON_0005036.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005036 * *Label* = mucosa of main bronchus - * *Definition* = A mucosa that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus principalis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13115] - * main bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13115 ] + * main bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -54,15 +54,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005136.md b/md/UBERON/36/UBERON_0005136.md index 86ed4c9dd0..0651529a61 100644 --- a/md/UBERON/36/UBERON_0005136.md +++ b/md/UBERON/36/UBERON_0005136.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005136 * *Label* = metanephric glomerular endothelium - * *Definition* = The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072264] + * *Definition* = The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072264 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular endothelium](../../UBERON/89/UBERON_0004189.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005236.md b/md/UBERON/36/UBERON_0005236.md index 7bb8646364..99a55122c3 100644 --- a/md/UBERON/36/UBERON_0005236.md +++ b/md/UBERON/36/UBERON_0005236.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005236 * *Label* = osseus labyrinth vestibule - * *Definition* = A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003382[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibule_of_the_ear] + * *Definition* = A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003382, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibule_of_the_ear ] ## Synonyms * bony labyrinth vestibule - * inner ear vestibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003382] - * osseous labyrinth vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vestibule of bony labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60183] - * vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000199] - * inner ear vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003382] - * vestibular apparatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:881] - * vestibular part of bony labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60183] - * vestibulum auris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibule_of_the_ear[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibulum labyrinthi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibule_of_the_ear[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inner ear vestibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003382 ] + * osseous labyrinth vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vestibule of bony labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60183 ] + * vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000199 ] + * inner ear vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003382 ] + * vestibular apparatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:881 ] + * vestibular part of bony labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60183 ] + * vestibulum auris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibule_of_the_ear, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibulum labyrinthi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibule_of_the_ear, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0001185 * MESH:A09.246.631.909 * SCTID:181188003 - * UMLS:C0458718 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibule] + * UMLS:C0458718 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibule ] * VHOG:0001220 * Wikipedia:Vestibule_of_the_ear * XAO:0000199 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The vestibule is the central part of the osseous labyrinth, and is situated medial to the tympanic cavity, behind the cochlea, and in front of the semicircular canals. [http://en.wikipedia.org/wiki/Vestibule_of_the_ear][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005336.md b/md/UBERON/36/UBERON_0005336.md index d117704a24..3f4f895e11 100644 --- a/md/UBERON/36/UBERON_0005336.md +++ b/md/UBERON/36/UBERON_0005336.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005336 * *Label* = capillary layer of choroid - * *Definition* = The capillary lamina of choroid or choriocapillaris is a layer of capillaries that is immediately adjacent to Bruch's membrane in the choroid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary_lamina_of_choroid] + * *Definition* = The capillary lamina of choroid or choriocapillaris is a layer of capillaries that is immediately adjacent to Bruch's membrane in the choroid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary_lamina_of_choroid ] ## Synonyms - * capillary lamina of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58437] - * capillary layer of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58437] - * inner layer of choroid proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58437] + * capillary lamina of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58437 ] + * capillary layer of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58437 ] + * inner layer of choroid proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58437 ] * capillary lamina of choroid or choriocapillaris - * choriocapillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary_lamina_of_choroid] + * choriocapillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary_lamina_of_choroid ] * lamina choriocapillaris - * lamina choroidocapillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary_lamina_of_choroid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina choroidocapillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary_lamina_of_choroid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [organ component layer](../../UBERON/23/UBERON_0004923.md) * [part_of](../../BFO/50/BFO_0000050.md) some [optic choroid](../../UBERON/76/UBERON_0001776.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [Bruch's membrane](../../UBERON/57/UBERON_0003957.md) * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [capillary](../../UBERON/82/UBERON_0001982.md) ## Equivalencies @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005436.md b/md/UBERON/36/UBERON_0005436.md index 08bc539dfa..17a8da7304 100644 --- a/md/UBERON/36/UBERON_0005436.md +++ b/md/UBERON/36/UBERON_0005436.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005436 * *Label* = common hepatic artery - * *Definition* = In anatomy, the common hepatic artery is a short blood vessel that supplies oxygenated blood to the liver, pylorus (a part of the stomach), duodenum (a part of the small intestine) and pancreas. It arises from the celiac artery and has the following branches: [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_hepatic_artery] + * *Definition* = In anatomy, the common hepatic artery is a short blood vessel that supplies oxygenated blood to the liver, pylorus (a part of the stomach), duodenum (a part of the small intestine) and pancreas. It arises from the celiac artery and has the following branches: [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_hepatic_artery ] ## Synonyms - * arteria hepatica communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_hepatic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * common hepatic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_hepatic_artery] + * arteria hepatica communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_hepatic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * common hepatic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_hepatic_artery ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0005636.md b/md/UBERON/36/UBERON_0005636.md index 035bd7ef09..de1ff3a5b1 100644 --- a/md/UBERON/36/UBERON_0005636.md +++ b/md/UBERON/36/UBERON_0005636.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005636 * *Label* = caecum epithelium - * *Definition* = An epithelium that is part of a caecum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a caecum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006136.md b/md/UBERON/36/UBERON_0006136.md index f534d7526a..e160206af8 100644 --- a/md/UBERON/36/UBERON_0006136.md +++ b/md/UBERON/36/UBERON_0006136.md @@ -6,7 +6,7 @@ ## Synonyms - * non-myelinated nerve fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5916] + * non-myelinated nerve fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5916 ] ## Cross-references @@ -14,7 +14,7 @@ * GAID:767 * MESH:A08.663.542.756 * SCTID:46920005 - * UMLS:C0501409 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Unmyelinated_Nerve_Fiber] + * UMLS:C0501409 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Unmyelinated_Nerve_Fiber ] * ncithesaurus:Unmyelinated_Nerve_Fiber ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006236.md b/md/UBERON/36/UBERON_0006236.md index 397358c19b..b9fd6e32fa 100644 --- a/md/UBERON/36/UBERON_0006236.md +++ b/md/UBERON/36/UBERON_0006236.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006336.md b/md/UBERON/36/UBERON_0006336.md index 5feb5b448b..9f6ccadf2d 100644 --- a/md/UBERON/36/UBERON_0006336.md +++ b/md/UBERON/36/UBERON_0006336.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = XAO:0003003 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0001093 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006336 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_0006436.md b/md/UBERON/36/UBERON_0006436.md index b01e719420..5a460b56c2 100644 --- a/md/UBERON/36/UBERON_0006436.md +++ b/md/UBERON/36/UBERON_0006436.md @@ -6,9 +6,9 @@ ## Synonyms - * 7th cervical intersegmental artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16811] - * 7th cervical intersomitic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * axial artery of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16811] + * 7th cervical intersegmental artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16811 ] + * 7th cervical intersomitic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * axial artery of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16811 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006536.md b/md/UBERON/36/UBERON_0006536.md index 7bc6a3a820..eb806dc90b 100644 --- a/md/UBERON/36/UBERON_0006536.md +++ b/md/UBERON/36/UBERON_0006536.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006536 * *Label* = male reproductive system fluid/secretion - * *Definition* = A portion of organism substance that secreted_by a male reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of organism substance that secreted_by a male reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006636.md b/md/UBERON/36/UBERON_0006636.md index 3c8c3a2936..7371c57c56 100644 --- a/md/UBERON/36/UBERON_0006636.md +++ b/md/UBERON/36/UBERON_0006636.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006636 * *Label* = lumbar artery - * *Definition* = The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_arteries] + * *Definition* = The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_arteries ] ## Synonyms - * Lumbar arterial tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14735] - * arteria lumbalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_arteries] - * arteriae lumbales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lumbar artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_arteries] + * Lumbar arterial tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14735 ] + * arteria lumbalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_arteries ] + * arteriae lumbales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lumbar artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_arteries ] ## Cross-references * EMAPA:19096 * FMA:14735 * SCTID:244285007 - * UMLS:C0226408 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Artery] + * UMLS:C0226408 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Artery ] * Wikipedia:Lumbar_arteries * http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png * ncithesaurus:Lumbar_Artery @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006836.md b/md/UBERON/36/UBERON_0006836.md index 3098ef6543..0b1a49d93e 100644 --- a/md/UBERON/36/UBERON_0006836.md +++ b/md/UBERON/36/UBERON_0006836.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006836 * *Label* = medial tibial tarsal bone - * *Definition* = Endochondral tarsal bone that is medially located and between the intermedium and centralia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005048] + * *Definition* = Endochondral tarsal bone that is medially located and between the intermedium and centralia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005048 ] ## Synonyms - * tibiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000912[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001350] + * tibiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000912, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001350 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two element that constitute the basal row of tarsals. The tibiale constitutes the postaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the fibulare.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0006936.md b/md/UBERON/36/UBERON_0006936.md index 3af02ce5f8..9a07d47211 100644 --- a/md/UBERON/36/UBERON_0006936.md +++ b/md/UBERON/36/UBERON_0006936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006936 * *Label* = thymus subcapsular epithelium - * *Definition* = An epithelium that is part of a capsule of thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a capsule of thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check whether this is part of the thymus or borders it ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [capsule of thymus](../../UBERON/22/UBERON_0002122.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0007136.md b/md/UBERON/36/UBERON_0007136.md index 24bd039c18..6288eefe92 100644 --- a/md/UBERON/36/UBERON_0007136.md +++ b/md/UBERON/36/UBERON_0007136.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007136 * *Label* = rectouterine fold - * *Definition* = These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_fold] + * *Definition* = These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_fold ] ## Synonyms - * fold of Douglas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16533] - * plica rectouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16533[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior ligament of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16533] - * recto-uterine fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16533] - * rectovaginal fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16533] - * plica rectouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Recto-uterine_fold[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fold of Douglas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16533 ] + * plica rectouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16533, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior ligament of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16533 ] + * recto-uterine fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16533 ] + * rectovaginal fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16533 ] + * plica rectouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Recto-uterine_fold, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0007236.md b/md/UBERON/36/UBERON_0007236.md index caac1bbb40..a4efabe2af 100644 --- a/md/UBERON/36/UBERON_0007236.md +++ b/md/UBERON/36/UBERON_0007236.md @@ -6,8 +6,8 @@ ## Synonyms - * eight-cell stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * NF stage 4 (8-cell) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:1000014[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * eight-cell stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * NF stage 4 (8-cell) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:1000014, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0007836.md b/md/UBERON/36/UBERON_0007836.md index 795630d5a4..60a7d8f995 100644 --- a/md/UBERON/36/UBERON_0007836.md +++ b/md/UBERON/36/UBERON_0007836.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007836 * *Label* = cervical spinal cord ventral commissure - * *Definition* = A spinal cord ventral commissure that is part of a cervical spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord ventral commissure that is part of a cervical spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cervical spinal cord anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1552] + * cervical spinal cord anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1552 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [spinal cord ventral commissure](../../UBERON/70/UBERON_0004170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0008436.md b/md/UBERON/36/UBERON_0008436.md index 109e0baa85..1b9d8f9a55 100644 --- a/md/UBERON/36/UBERON_0008436.md +++ b/md/UBERON/36/UBERON_0008436.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008436 * *Label* = thoracic vertebral arch - * *Definition* = A neural arch that is part of a thoracic vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural arch that is part of a thoracic vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arch of thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9151] + * arch of thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9151 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural arch](../../UBERON/61/UBERON_0003861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0008836.md b/md/UBERON/36/UBERON_0008836.md index 6365d182ae..6d28a4f474 100644 --- a/md/UBERON/36/UBERON_0008836.md +++ b/md/UBERON/36/UBERON_0008836.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0008936.md b/md/UBERON/36/UBERON_0008936.md index db4ae00a63..27bf2dba1a 100644 --- a/md/UBERON/36/UBERON_0008936.md +++ b/md/UBERON/36/UBERON_0008936.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008936 * *Label* = gastropod genital pore - * *Definition* = A small opening on the side of the head in some gastropods through which the penis is protruded. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004684] + * *Definition* = A small opening on the side of the head in some gastropods through which the penis is protruded. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004684 ] ## Synonyms - * genital pore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004684] - * genital orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004684] + * genital pore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004684 ] + * genital orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004684 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0009536.md b/md/UBERON/36/UBERON_0009536.md index da70c6f742..3ec26da993 100644 --- a/md/UBERON/36/UBERON_0009536.md +++ b/md/UBERON/36/UBERON_0009536.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009536 * *Label* = vascular element of left lung - * *Definition* = A vascular plexus that is part of a left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vascular plexus that is part of a left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [vascular plexus](../../UBERON/29/UBERON_0005629.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0009636.md b/md/UBERON/36/UBERON_0009636.md index 2e1e07dce5..0a00cd86d6 100644 --- a/md/UBERON/36/UBERON_0009636.md +++ b/md/UBERON/36/UBERON_0009636.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009636 * *Label* = prechordal cartilage - * *Definition* = Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:1588903958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:1588903958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = classified as part of chondrocranium based on developmental relationships ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0009736.md b/md/UBERON/36/UBERON_0009736.md index 0bcb2f8054..7e1d37139d 100644 --- a/md/UBERON/36/UBERON_0009736.md +++ b/md/UBERON/36/UBERON_0009736.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009736 * *Label* = sublaminar layers S3 or S4 or S5 - * *Definition* = One of sublaminar layers S3, S4, or S5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S3, S4, or S5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md)or[sublaminar layer S4](../../UBERON/25/UBERON_0008925.md)or[sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0009836.md b/md/UBERON/36/UBERON_0009836.md index 7c60192274..2b928b7517 100644 --- a/md/UBERON/36/UBERON_0009836.md +++ b/md/UBERON/36/UBERON_0009836.md @@ -6,18 +6,18 @@ ## Synonyms - * fronto-orbital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1243] + * fronto-orbital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1243 ] * orbito-frontal gyrus * orbitofrontal gyrus - * gyrus fronto-orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:90[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus fronto-orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:90, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:FOG * BAMS:OFG * NIF_GrossAnatomy:birnlex_1243 - * NeuroNames:90 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1243] - * UMLS:C0262239 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1243] + * NeuroNames:90 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1243 ] + * UMLS:C0262239 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1243 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0010036.md b/md/UBERON/36/UBERON_0010036.md index 6cb20e85d5..5c4d5f6cf4 100644 --- a/md/UBERON/36/UBERON_0010036.md +++ b/md/UBERON/36/UBERON_0010036.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010036 * *Label* = anterior tegmental nucleus - * *Definition* = a group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 ) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115] + * *Definition* = a group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 ) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115 ] ## Synonyms - * anterior group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * anterior group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * anterior thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * dorsal thalamus anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] + * anterior group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * anterior group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * anterior thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * dorsal thalamus anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0010136.md b/md/UBERON/36/UBERON_0010136.md index 933773a6a4..199905ed28 100644 --- a/md/UBERON/36/UBERON_0010136.md +++ b/md/UBERON/36/UBERON_0010136.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010136 * *Label* = epithelial sheet - * *Definition* = An epithelial sheet is a flat surface consisting of closely packed epithelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002011] + * *Definition* = An epithelial sheet is a flat surface consisting of closely packed epithelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002011 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0010336.md b/md/UBERON/36/UBERON_0010336.md index 655bd1fa2c..531289309b 100644 --- a/md/UBERON/36/UBERON_0010336.md +++ b/md/UBERON/36/UBERON_0010336.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010336 * *Label* = mandibular process mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a mandibular process mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mandibular process mesenchyme](../../UBERON/05/UBERON_0006905.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0010536.md b/md/UBERON/36/UBERON_0010536.md index c9eb9468c7..f0715c6919 100644 --- a/md/UBERON/36/UBERON_0010536.md +++ b/md/UBERON/36/UBERON_0010536.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010536 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0010936.md b/md/UBERON/36/UBERON_0010936.md index 64cd3dc43c..581123df3f 100644 --- a/md/UBERON/36/UBERON_0010936.md +++ b/md/UBERON/36/UBERON_0010936.md @@ -7,12 +7,12 @@ ## Synonyms - * pars thyropharyngea (musculus constrictor pharyngis inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46658] - * pars thyropharyngea musculus constrictoris pharyngis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thyropharyngeal part of inferior constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46658] + * pars thyropharyngea (musculus constrictor pharyngis inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46658 ] + * pars thyropharyngea musculus constrictoris pharyngis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thyropharyngeal part of inferior constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46658 ] * thyropharyngeal part of inferior constrictor pharyngeus muscle - * thyropharyngeal part of inferior pharyngeal constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46658] - * thyropharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46658] + * thyropharyngeal part of inferior pharyngeal constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46658 ] + * thyropharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46658 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0011136.md b/md/UBERON/36/UBERON_0011136.md index 473a971f82..06659df17b 100644 --- a/md/UBERON/36/UBERON_0011136.md +++ b/md/UBERON/36/UBERON_0011136.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011136 * *Label* = ligament of vertebral column - * *Definition* = ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * vertebral column ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:31892] + * vertebral column ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:31892 ] * intervertebral ligament * vertebral centrum ligament @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [vertebral centrum](../../UBERON/75/UBERON_0001075.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0011236.md b/md/UBERON/36/UBERON_0011236.md index c4b33b3197..f3f9ef1a9a 100644 --- a/md/UBERON/36/UBERON_0011236.md +++ b/md/UBERON/36/UBERON_0011236.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011236 * *Label* = deep fascia - * *Definition* = Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_fascia] + * *Definition* = Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_fascia ] ## Synonyms - * deep investing fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_fascia] - * fascia profunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_fascia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * investing fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_fascia] + * deep investing fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_fascia ] + * fascia profunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_fascia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * investing fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_fascia ] ## Cross-references * FMA:27935 - * UMLS:C1511746 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Fascia] + * UMLS:C1511746 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Fascia ] * Wikipedia:Deep_fascia * ncithesaurus:Deep_Fascia @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0011636.md b/md/UBERON/36/UBERON_0011636.md index 65ec978ffd..6b42a7dd47 100644 --- a/md/UBERON/36/UBERON_0011636.md +++ b/md/UBERON/36/UBERON_0011636.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011636 * *Label* = surangular bone - * *Definition* = The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html] + * *Definition* = The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html ] * *Comment* = Taxon notes: "Nevertheless, it is not completely clear that this[osteichthyans] surangular is homologous with the surangular in tetrapods"[paleos] In some lepospondyls, and in frogs and salamanders, the surangular is absent. However, it becomes increasingly significant in the anthracosaur lineage. In turtles, it is one of the two principle bones of the lower jaw. In lepidosaurs, it is less important because of the development of a separate coronoid bone. In advanced lizards and pythonomorphs, it may fuse with the articular and perhaps other bones and loses its separate identity. In syanapsids, a secondary jaw joint develops between the surangular and the squamosal, which becomes the unique mammalian jaw articulation. However, the surangular fuses with the dentary and becomes the unitary mammalian "mandible" without a separate identity ## Synonyms - * surangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002287] - * supra-angular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] - * supra-angular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] - * supraangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] - * supraangular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] - * suprangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprangular[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] - * suprangular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/164] + * surangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002287 ] + * supra-angular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] + * supra-angular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] + * supraangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] + * supraangular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] + * suprangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprangular, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] + * suprangular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/164 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dermal bone of the suspensorium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0011936.md b/md/UBERON/36/UBERON_0011936.md index eba4e4a80c..5f61d2659f 100644 --- a/md/UBERON/36/UBERON_0011936.md +++ b/md/UBERON/36/UBERON_0011936.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011936 * *Label* = vibrissa hair bulb - * *Definition* = A bulb of hair follicle that is part of a vibrissa unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bulb of hair follicle that is part of a vibrissa unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 ## Synonyms - * bulb of sinus hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26753] + * bulb of sinus hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26753 ] * bulb of vibrissa follicle - * vibrissa bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26716] + * vibrissa bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26716 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bulb of hair follicle](../../UBERON/32/UBERON_0005932.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa unit](../../UBERON/33/UBERON_0011933.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0012136.md b/md/UBERON/36/UBERON_0012136.md index dcad7fe666..d89fb845e7 100644 --- a/md/UBERON/36/UBERON_0012136.md +++ b/md/UBERON/36/UBERON_0012136.md @@ -28,8 +28,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = prehallical - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0012236.md b/md/UBERON/36/UBERON_0012236.md index c835f7ff6c..b3fa4f46c9 100644 --- a/md/UBERON/36/UBERON_0012236.md +++ b/md/UBERON/36/UBERON_0012236.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012236 * *Label* = intercostal lymph node - * *Definition* = The intercostal lymph nodes (intercostal glands ) occupy the posterior parts of the intercostal spaces, in relation to the intercostal vessels. They receive the deep lymphatics from the postero-lateral aspect of the chest; some of these vessels are interrupted by small lateral intercostal glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_lymph_nodes] + * *Definition* = The intercostal lymph nodes (intercostal glands ) occupy the posterior parts of the intercostal spaces, in relation to the intercostal vessels. They receive the deep lymphatics from the postero-lateral aspect of the chest; some of these vessels are interrupted by small lateral intercostal glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_lymph_nodes ] ## Synonyms - * intercostal node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5932] - * nodi lymphoidei intercostales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_lymph_nodes] - * nodus intercostale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5932] + * intercostal node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5932 ] + * nodi lymphoidei intercostales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_lymph_nodes ] + * nodus intercostale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5932 ] ## Cross-references * FMA:5932 * SCTID:204088001 - * UMLS:C0229761 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intercostal_Lymph_Node] + * UMLS:C0229761 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intercostal_Lymph_Node ] * Wikipedia:Intercostal_lymph_nodes * ncithesaurus:Intercostal_Lymph_Node @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [intercostal space](../../UBERON/98/UBERON_0012198.md) and [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0012336.md b/md/UBERON/36/UBERON_0012336.md index d981d6faee..59ab9d30f9 100644 --- a/md/UBERON/36/UBERON_0012336.md +++ b/md/UBERON/36/UBERON_0012336.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [perineum](../../UBERON/56/UBERON_0002356.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012336 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0013136.md b/md/UBERON/36/UBERON_0013136.md index 9e42f8b093..b58e0890a7 100644 --- a/md/UBERON/36/UBERON_0013136.md +++ b/md/UBERON/36/UBERON_0013136.md @@ -7,8 +7,8 @@ ## Synonyms * labial vein of face - * lip vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena labialis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lip vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena labialis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * labial vein ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [lip](../../UBERON/33/UBERON_0001833.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013136 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0013236.md b/md/UBERON/36/UBERON_0013236.md index 7c0a177701..a12c931b3c 100644 --- a/md/UBERON/36/UBERON_0013236.md +++ b/md/UBERON/36/UBERON_0013236.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013236 * *Label* = ventral trunk - * *Definition* = The subdivision of the trunk that overlaps with the ventrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The subdivision of the trunk that overlaps with the ventrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * anterolateral part of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25055] - * front of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25055] - * trunk front [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25055] - * trunk proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25055] + * anterolateral part of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25055 ] + * front of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25055 ] + * trunk front [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25055 ] + * trunk proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25055 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of trunk which is demarcated from the back of trunk by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall and from the limbs by the inguinal folds; together with the back of trunk, it constitutes the trunk. Examples: There is only one trunk proper[FMA:25055]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013236 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0013436.md b/md/UBERON/36/UBERON_0013436.md index 9ddfbef83a..9e719238f8 100644 --- a/md/UBERON/36/UBERON_0013436.md +++ b/md/UBERON/36/UBERON_0013436.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013436 * *Label* = porion - * *Definition* = The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Porion] + * *Definition* = The porion is the point on the human skull located at the upper margin of each ear canal (external auditory meatus, external acoustic meatus). It underlies the tragus. The anatomical landmark has significance in biological anthropology and craniometry. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Porion ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0013636.md b/md/UBERON/36/UBERON_0013636.md index 750606aa5f..685d047467 100644 --- a/md/UBERON/36/UBERON_0013636.md +++ b/md/UBERON/36/UBERON_0013636.md @@ -6,7 +6,7 @@ ## Synonyms - * intestinal villus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63587] + * intestinal villus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63587 ] * villous epithelium * villus epithelium @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestinal villus](../../UBERON/13/UBERON_0001213.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0013736.md b/md/UBERON/36/UBERON_0013736.md index 659293591e..224a48c27a 100644 --- a/md/UBERON/36/UBERON_0013736.md +++ b/md/UBERON/36/UBERON_0013736.md @@ -6,9 +6,9 @@ ## Synonyms - * IF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21653852[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * IF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21653852, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * central linear nucleus - * intermediate linear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77503] + * intermediate linear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77503 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0014436.md b/md/UBERON/36/UBERON_0014436.md index c01e253f98..3baab45407 100644 --- a/md/UBERON/36/UBERON_0014436.md +++ b/md/UBERON/36/UBERON_0014436.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014436 * *Label* = lesser sciatic notch - * *Definition* = Below the ischial spine is a smaller notch, the lesser sciatic notch; it is smooth, coated in the recent state with cartilage, the surface of which presents two or three ridges corresponding to the subdivisions of the tendon of the Obturator internus, which winds over it. It is converted into a foramen, the lesser sciatic foramen, by the sacrotuberous and sacrospinous ligaments, and transmits the tendon of the Obturator internus, the nerve which supplies that muscle, and the internal pudendal vessels and nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_sciatic_notch] + * *Definition* = Below the ischial spine is a smaller notch, the lesser sciatic notch; it is smooth, coated in the recent state with cartilage, the surface of which presents two or three ridges corresponding to the subdivisions of the tendon of the Obturator internus, which winds over it. It is converted into a foramen, the lesser sciatic foramen, by the sacrotuberous and sacrospinous ligaments, and transmits the tendon of the Obturator internus, the nerve which supplies that muscle, and the internal pudendal vessels and nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_sciatic_notch ] ## Synonyms - * incisura ischiadica minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_sciatic_notch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * incisura ischiadica minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_sciatic_notch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014436 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0014636.md b/md/UBERON/36/UBERON_0014636.md index 66943825a0..3df372065b 100644 --- a/md/UBERON/36/UBERON_0014636.md +++ b/md/UBERON/36/UBERON_0014636.md @@ -6,13 +6,13 @@ ## Synonyms - * thoracic spinal cord gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_980[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * thoracic spinal cord gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_980, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_980 * SCTID:362441000 - * UMLS:C0228627 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_980] + * UMLS:C0228627 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_980 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of spinal cord](../../UBERON/15/UBERON_0002315.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014636 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0014736.md b/md/UBERON/36/UBERON_0014736.md index 7345e269ae..861832a55c 100644 --- a/md/UBERON/36/UBERON_0014736.md +++ b/md/UBERON/36/UBERON_0014736.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014736 * *Label* = periallocortex - * *Definition* = agranular cortical structures located next to the allocortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN] + * *Definition* = agranular cortical structures located next to the allocortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN ] ## Synonyms - * periallocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2315] + * periallocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2315 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014736 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0014836.md b/md/UBERON/36/UBERON_0014836.md index 3344cc5814..f6c86295ee 100644 --- a/md/UBERON/36/UBERON_0014836.md +++ b/md/UBERON/36/UBERON_0014836.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014836 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0014936.md b/md/UBERON/36/UBERON_0014936.md index e85cec8933..6c3a46a530 100644 --- a/md/UBERON/36/UBERON_0014936.md +++ b/md/UBERON/36/UBERON_0014936.md @@ -6,7 +6,7 @@ ## Synonyms - * cerebral cortex ventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:32707] + * cerebral cortex ventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:32707 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014936 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_0015036.md b/md/UBERON/36/UBERON_0015036.md index d01a88af69..78edfa92ef 100644 --- a/md/UBERON/36/UBERON_0015036.md +++ b/md/UBERON/36/UBERON_0015036.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015036 * *Label* = pedal digit metatarsal endochondral element - * *Definition* = A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsus region](../../UBERON/83/UBERON_0000983.md) + * [metatarsus skeleton](../../UBERON/45/UBERON_0010545.md)or[pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md)or[pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015036 + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2000136.md b/md/UBERON/36/UBERON_2000136.md index e9098621eb..c804d818c1 100644 --- a/md/UBERON/36/UBERON_2000136.md +++ b/md/UBERON/36/UBERON_2000136.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000136 * *Label* = otic lateral line neuromast - * *Definition* = Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast otic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000136] - * neuromasts otic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000136[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * neuromast otic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000136 ] + * neuromasts otic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000136, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2000336.md b/md/UBERON/36/UBERON_2000336.md index 552489312d..25cd4c27d1 100644 --- a/md/UBERON/36/UBERON_2000336.md +++ b/md/UBERON/36/UBERON_2000336.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000336 * *Label* = preopercle vertical limb - * *Definition* = A dermal bone that is the upper, vertical portion of the preopercle bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A dermal bone that is the upper, vertical portion of the preopercle bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ascending arm of preopercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000336] - * preopercle upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000336] - * preopercle vertical arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000336] + * ascending arm of preopercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000336 ] + * preopercle upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000336 ] + * preopercle vertical arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000336 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2000536.md b/md/UBERON/36/UBERON_2000536.md index f8bfbf93e8..21331f388f 100644 --- a/md/UBERON/36/UBERON_2000536.md +++ b/md/UBERON/36/UBERON_2000536.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_2000636.md b/md/UBERON/36/UBERON_2000636.md index db28cc5945..737b38d938 100644 --- a/md/UBERON/36/UBERON_2000636.md +++ b/md/UBERON/36/UBERON_2000636.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2000836.md b/md/UBERON/36/UBERON_2000836.md index 03fda1e079..0fe61043a2 100644 --- a/md/UBERON/36/UBERON_2000836.md +++ b/md/UBERON/36/UBERON_2000836.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000836 * *Label* = sclerotome somite 30 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2000936.md b/md/UBERON/36/UBERON_2000936.md index d13ee38154..06694a13c9 100644 --- a/md/UBERON/36/UBERON_2000936.md +++ b/md/UBERON/36/UBERON_2000936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000936 * *Label* = dorsal fin distal radial bone - * *Definition* = dorsal fin distal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2001036.md b/md/UBERON/36/UBERON_2001036.md index 59bfd5c6a2..22a0938701 100644 --- a/md/UBERON/36/UBERON_2001036.md +++ b/md/UBERON/36/UBERON_2001036.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001036 * *Label* = sclerotome somite 10 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2001236.md b/md/UBERON/36/UBERON_2001236.md index 55860a6399..522e8d7019 100644 --- a/md/UBERON/36/UBERON_2001236.md +++ b/md/UBERON/36/UBERON_2001236.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001236 * *Label* = hypobranchial 2 bone - * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hypobranchial bone that is bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. Develops in hypobranchial 2 cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2001536.md b/md/UBERON/36/UBERON_2001536.md index f01ede3fe3..c5b002d87d 100644 --- a/md/UBERON/36/UBERON_2001536.md +++ b/md/UBERON/36/UBERON_2001536.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001536 * *Label* = pharyngobranchial 2 cartilage - * *Definition* = Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngobranchial cartilage, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2001636.md b/md/UBERON/36/UBERON_2001636.md index a1acd59b50..476c6bf7fd 100644 --- a/md/UBERON/36/UBERON_2001636.md +++ b/md/UBERON/36/UBERON_2001636.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001636 * *Label* = pharyngobranchial 4 bone - * *Definition* = Most posterior pharyngobranchial bone, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Most posterior pharyngobranchial bone, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 4 bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001636] + * infrapharyngobranchial 4 bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001636 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2001936.md b/md/UBERON/36/UBERON_2001936.md index 545182cd28..e2e0641450 100644 --- a/md/UBERON/36/UBERON_2001936.md +++ b/md/UBERON/36/UBERON_2001936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001936 * *Label* = posterior nasal barbel - * *Definition* = Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2005036.md b/md/UBERON/36/UBERON_2005036.md index 2f95f81f8a..07e89110ab 100644 --- a/md/UBERON/36/UBERON_2005036.md +++ b/md/UBERON/36/UBERON_2005036.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005036 * *Label* = supraintestinal artery - * *Definition* = A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * SIA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005036] + * SIA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005036 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2005336.md b/md/UBERON/36/UBERON_2005336.md index fac2a29498..fdb070ecce 100644 --- a/md/UBERON/36/UBERON_2005336.md +++ b/md/UBERON/36/UBERON_2005336.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2007036.md b/md/UBERON/36/UBERON_2007036.md index f1a97b8ed6..89d83db6d6 100644 --- a/md/UBERON/36/UBERON_2007036.md +++ b/md/UBERON/36/UBERON_2007036.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2100936.md b/md/UBERON/36/UBERON_2100936.md index d2cc74d523..912a2ac988 100644 --- a/md/UBERON/36/UBERON_2100936.md +++ b/md/UBERON/36/UBERON_2100936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100936 * *Label* = dorsal fin distal radial element - * *Definition* = Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the lepidotrichia distally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connected_to](../../core#connected/to/core#connected_to.md) some [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [dorsal fin radial element](../../UBERON/72/UBERON_2101672.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore](../../UBERON/19/UBERON_2001419.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_2200936.md b/md/UBERON/36/UBERON_2200936.md index a48cae5750..bd51d4d583 100644 --- a/md/UBERON/36/UBERON_2200936.md +++ b/md/UBERON/36/UBERON_2200936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200936 * *Label* = dorsal fin distal radial cartilage - * *Definition* = dorsal fin distal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3000036.md b/md/UBERON/36/UBERON_3000036.md index e360ad54a9..382aafae58 100644 --- a/md/UBERON/36/UBERON_3000036.md +++ b/md/UBERON/36/UBERON_3000036.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000036 * *Label* = basal process of palatoquadrate - * *Definition* = Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000036] + * processus basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000036 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3000736.md b/md/UBERON/36/UBERON_3000736.md index 97a995d3c2..891e60bfa8 100644 --- a/md/UBERON/36/UBERON_3000736.md +++ b/md/UBERON/36/UBERON_3000736.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000736 * *Label* = obsolete deltopectoral crest - * *Definition* = Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms * crista ventralis - * crista ventralis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000736] - * deltoid crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000736] + * crista ventralis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000736 ] + * deltoid crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000736 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002498 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_3000836.md b/md/UBERON/36/UBERON_3000836.md index e969db7410..ff0bcaedde 100644 --- a/md/UBERON/36/UBERON_3000836.md +++ b/md/UBERON/36/UBERON_3000836.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000836 * *Label* = crista lateralis humeri - * *Definition* = Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3000936.md b/md/UBERON/36/UBERON_3000936.md index 1b3935473b..25c8f34476 100644 --- a/md/UBERON/36/UBERON_3000936.md +++ b/md/UBERON/36/UBERON_3000936.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000936 * *Label* = zonal element - * *Definition* = All those parts of the pectoral girdle in the central region of the zonal area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = All those parts of the pectoral girdle in the central region of the zonal area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3010136.md b/md/UBERON/36/UBERON_3010136.md index 483eaa96ca..501a529d28 100644 --- a/md/UBERON/36/UBERON_3010136.md +++ b/md/UBERON/36/UBERON_3010136.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010136 * *Label* = M. cruralis - * *Definition* = Originates from the anterior surface of the hip joint capsule between the iliacus internus and the pectineus. Inserts by an aponeurosis attaching to the condyles of the femur and on the head of the cruris. This continues over the cruris to cover the tibialis anticus longus and peroneus to insert on the dorsal surface of those muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the anterior surface of the hip joint capsule between the iliacus internus and the pectineus. Inserts by an aponeurosis attaching to the condyles of the femur and on the head of the cruris. This continues over the cruris to cover the tibialis anticus longus and peroneus to insert on the dorsal surface of those muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3010436.md b/md/UBERON/36/UBERON_3010436.md index 80a2c0f283..ec349ee80e 100644 --- a/md/UBERON/36/UBERON_3010436.md +++ b/md/UBERON/36/UBERON_3010436.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3010636.md b/md/UBERON/36/UBERON_3010636.md index 27b8f8060f..bd2154bfa9 100644 --- a/md/UBERON/36/UBERON_3010636.md +++ b/md/UBERON/36/UBERON_3010636.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010636 * *Label* = egg capsules - * *Definition* = Protective membranes that surround amphibian embryos. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Protective membranes that surround amphibian embryos. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3010736.md b/md/UBERON/36/UBERON_3010736.md index 4b25277c3f..818ee3a0a7 100644 --- a/md/UBERON/36/UBERON_3010736.md +++ b/md/UBERON/36/UBERON_3010736.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010736 * *Label* = ramus posterior of CN VIII - * *Definition* = Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_3010836.md b/md/UBERON/36/UBERON_3010836.md index ee6ec23c85..013ba19c1a 100644 --- a/md/UBERON/36/UBERON_3010836.md +++ b/md/UBERON/36/UBERON_3010836.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010836 * *Label* = Posterolateral Supplementary Element - * *Definition* = A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A muscle slip arising from the ventral surface of the mandible by means of the ligament near the site of mandibular articulation. The fibers pass anteromedially and attach upon the ventral surfaces of the principal element of the m. intermandibularis (Tyler, 1971). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_4000136.md b/md/UBERON/36/UBERON_4000136.md index 4b8829beb0..a49ce8261f 100644 --- a/md/UBERON/36/UBERON_4000136.md +++ b/md/UBERON/36/UBERON_4000136.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000136 * *Label* = obsolete direct ossification - * *Definition* = Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0036072 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/36/UBERON_4200036.md b/md/UBERON/36/UBERON_4200036.md index 6694c35de9..4726f0209a 100644 --- a/md/UBERON/36/UBERON_4200036.md +++ b/md/UBERON/36/UBERON_4200036.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_4200136.md b/md/UBERON/36/UBERON_4200136.md index 5fe0bdb13c..2b177f5bc9 100644 --- a/md/UBERON/36/UBERON_4200136.md +++ b/md/UBERON/36/UBERON_4200136.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/36/UBERON_4300036.md b/md/UBERON/36/UBERON_4300036.md index b668f31c18..5cca126b0e 100644 --- a/md/UBERON/36/UBERON_4300036.md +++ b/md/UBERON/36/UBERON_4300036.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0000037.md b/md/UBERON/37/UBERON_0000037.md index fe4357ecb9..eaf729b889 100644 --- a/md/UBERON/37/UBERON_0000037.md +++ b/md/UBERON/37/UBERON_0000037.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000037 * *Label* = tertiary ovarian follicle - * *Definition* = Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Graafian_follicle] + * *Definition* = Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Graafian_follicle ] ## Synonyms * Graafian follicle - * folliculi ovarici vesiculosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18641[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * folliculi ovarici vesiculosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18641, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * folliculus ovaricus tertiarius - * folliculus ovaricus tertiarius (vesiculosus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18641] + * folliculus ovaricus tertiarius (vesiculosus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18641 ] * folliculus ovaricus tertiarius (vesiculous) - * tertiary follicle of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18641] - * vesicular follicle of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18641] - * vesicular ovarian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18641] + * tertiary follicle of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18641 ] + * vesicular follicle of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18641 ] + * vesicular ovarian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18641 ] * tertiary egg follicle ## Cross-references @@ -22,7 +22,7 @@ * EMAPA:30763 * FMA:18641 * SCTID:362261008 - * UMLS:C0600225 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Graafian_Follicle] + * UMLS:C0600225 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Graafian_Follicle ] * Wikipedia:Graafian_follicle * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG * ncithesaurus:Graafian_Follicle @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0000437.md b/md/UBERON/37/UBERON_0000437.md index 664c50f244..35de1dcd2d 100644 --- a/md/UBERON/37/UBERON_0000437.md +++ b/md/UBERON/37/UBERON_0000437.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000437 * *Label* = arachnoid barrier layer - * *Definition* = The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002498] + * *Definition* = The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002498 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0000937.md b/md/UBERON/37/UBERON_0000937.md index 2bb491c582..fc13243d67 100644 --- a/md/UBERON/37/UBERON_0000937.md +++ b/md/UBERON/37/UBERON_0000937.md @@ -7,7 +7,7 @@ ## Synonyms - * proneural clusters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000068] + * proneural clusters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000068 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00001135 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000068 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000937 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_0001037.md b/md/UBERON/37/UBERON_0001037.md index fdfb775df8..32de3a21d0 100644 --- a/md/UBERON/37/UBERON_0001037.md +++ b/md/UBERON/37/UBERON_0001037.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001037 * *Label* = strand of hair - * *Definition* = A filament, mostly protein, that grows from follicles found in the dermis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hair] + * *Definition* = A filament, mostly protein, that grows from follicles found in the dermis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hair ] * *Comment* = this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales) ## Synonyms @@ -13,10 +13,10 @@ * coat/ hair * fur * microchaeta - * quill [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * quill [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * setulae - * vibrissa [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * whisker [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * vibrissa [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * whisker [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,7 +33,7 @@ * MIAA:0000160 * OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww * SCTID:361702001 - * UMLS:C0018494 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair] + * UMLS:C0018494 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair ] * VHOG:0001191 * Wikipedia:Hair * http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png @@ -63,8 +63,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001137.md b/md/UBERON/37/UBERON_0001137.md index ac020b31f6..2037a0f05c 100644 --- a/md/UBERON/37/UBERON_0001137.md +++ b/md/UBERON/37/UBERON_0001137.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001137 * *Label* = dorsum - * *Definition* = The dorsal part of an animal, which in vertebrares includes the vertebral column. [cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsum_(anatomy)] + * *Definition* = The dorsal part of an animal, which in vertebrares includes the vertebral column. [cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsum_(anatomy) ] * *Comment* = Taxon notes: In humans, called the back, a large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body ## Synonyms - * back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14181] - * back of body proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14181] + * back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14181 ] + * back of body proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14181 ] * dorsal part of organism ## Cross-references @@ -22,7 +22,7 @@ * MESH:A01.176 * OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA * SCTID:123961009 - * UMLS:C0004600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Back] + * UMLS:C0004600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Back ] * Wikipedia:Dorsum_(anatomy) * galen:Back * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG @@ -46,8 +46,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dorsal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001237.md b/md/UBERON/37/UBERON_0001237.md index 2a4a71688f..3740cd36d4 100644 --- a/md/UBERON/37/UBERON_0001237.md +++ b/md/UBERON/37/UBERON_0001237.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001237 * *Label* = paraaortic body - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organ_of_Zuckerkandl] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organ_of_Zuckerkandl ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * organ of zuckerkandl - * paraganglion of Zuckerkandl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18223] + * paraganglion of Zuckerkandl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18223 ] * para-aortic body * paraganglia of zuckerkandl @@ -21,7 +21,7 @@ * MA:0001137 * MESH:A06.224.636 * SCTID:276159005 - * UMLS:C0442134 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paraaortic] + * UMLS:C0442134 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paraaortic ] * Wikipedia:Organ_of_Zuckerkandl * http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001337.md b/md/UBERON/37/UBERON_0001337.md index 708ab18368..36966115aa 100644 --- a/md/UBERON/37/UBERON_0001337.md +++ b/md/UBERON/37/UBERON_0001337.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001337 * *Label* = spongiose part of urethra - * *Definition* = The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethrae. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Penile_urethra] + * *Definition* = The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethrae. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Penile_urethra ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cavernous portion of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] - * male spongiose urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] + * cavernous portion of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] + * male spongiose urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] * male spongy urethra - * pars cavernosa urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] - * pars spongiosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19675[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars spongiosa urethrae masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] - * penile urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] - * spongiose urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011779] + * pars cavernosa urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] + * pars spongiosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19675, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars spongiosa urethrae masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] + * penile urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] + * spongiose urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011779 ] * spongy urethra (male) ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001437.md b/md/UBERON/37/UBERON_0001437.md index 719d05007d..55f388fe44 100644 --- a/md/UBERON/37/UBERON_0001437.md +++ b/md/UBERON/37/UBERON_0001437.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001437 * *Label* = epiphysis - * *Definition* = Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiphysis] + * *Definition* = Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiphysis ] * *Comment* = see also: annular epiphysis ## Synonyms * bone epiphysis * end of long bone - * epiphyses [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * epiphyses [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * long bone epiphysis ## Cross-references @@ -21,7 +21,7 @@ * MA:0001362 * MESH:A02.835.232.251 * SCTID:244701002 - * UMLS:C1708734 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Long_Bone_Epiphysis] + * UMLS:C1708734 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Long_Bone_Epiphysis ] * Wikipedia:Epiphysis * http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilaginous expansion at the distal end of an anterior rib or transverse process that serves for the attachment of muscles suspending the pectoral girdle to the vertebral column.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epiphyseal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epiphysial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001537.md b/md/UBERON/37/UBERON_0001537.md index 3f2c16ad7d..05a400ee93 100644 --- a/md/UBERON/37/UBERON_0001537.md +++ b/md/UBERON/37/UBERON_0001537.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001537 * *Label* = anterior tibial artery - * *Definition* = The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tibial_artery] + * *Definition* = The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tibial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria tibialis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tibial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria tibialis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tibial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002574 * OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA * SCTID:181357006 - * UMLS:C0085816 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Tibial_Artery] + * UMLS:C0085816 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Tibial_Artery ] * Wikipedia:Anterior_tibial_artery * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001637.md b/md/UBERON/37/UBERON_0001637.md index bb761dda9f..a70ebd36a6 100644 --- a/md/UBERON/37/UBERON_0001637.md +++ b/md/UBERON/37/UBERON_0001637.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001637 * *Label* = artery - * *Definition* = An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] * *Comment* = Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme. ## Synonyms * arterial subtree * arterial tree organ part - * arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000005[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000005, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * arterial system * arterial vessel @@ -33,7 +33,7 @@ * OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA * SCTID:362877004 * TAO:0000005 - * UMLS:C0003842 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Artery] + * UMLS:C0003842 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Artery ] * VHOG:0001251 * XAO:0000114 * ZFA:0000005 @@ -65,8 +65,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = arterial * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_63812 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001737.md b/md/UBERON/37/UBERON_0001737.md index a69065f283..4967fd8df3 100644 --- a/md/UBERON/37/UBERON_0001737.md +++ b/md/UBERON/37/UBERON_0001737.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001737 * *Label* = larynx - * *Definition* = Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55097[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larynx] + * *Definition* = Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55097, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larynx ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Kehlkopf@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001208] + * Kehlkopf@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001208 ] ## Cross-references @@ -27,7 +27,7 @@ * MIAA:0000187 * OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA * SCTID:181212004 - * UMLS:C0023078 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Larynx] + * UMLS:C0023078 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Larynx ] * VHOG:0001279 * Wikipedia:Larynx * XAO:0003081 @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = laryngeal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001837.md b/md/UBERON/37/UBERON_0001837.md index e3f014f485..67ce295355 100644 --- a/md/UBERON/37/UBERON_0001837.md +++ b/md/UBERON/37/UBERON_0001837.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001837 * *Label* = duct of salivary gland - * *Definition* = An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005115[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salivary_duct] + * *Definition* = An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005115, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salivary_duct ] * *Comment* = check taxonomy coverage - define functionally? ## Synonyms * salivary duct * salivary gland duct - * secretory duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005115] + * secretory duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005115 ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [salivary gland](../../UBERON/44/UBERON_0001044.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0001937.md b/md/UBERON/37/UBERON_0001937.md index f2cc817022..bf2964d8d2 100644 --- a/md/UBERON/37/UBERON_0001937.md +++ b/md/UBERON/37/UBERON_0001937.md @@ -7,9 +7,9 @@ ## Synonyms - * LHy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1199[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * areas of Economo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1347] - * economo's areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1347] + * LHy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1199, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * areas of Economo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1347 ] + * economo's areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1347 ] ## Cross-references @@ -17,10 +17,10 @@ * EV:0100234 * FMA:62337 * NIF_GrossAnatomy:birnlex_1199 - * NeuroNames:1347 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1199] + * NeuroNames:1347 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1199 ] * SCTID:360452004 * TAO:0000227 - * UMLS:C0086527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1199] + * UMLS:C0086527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1199 ] * ZFA:0000227 * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002037.md b/md/UBERON/37/UBERON_0002037.md index 9ab3cf274d..05464ac140 100644 --- a/md/UBERON/37/UBERON_0002037.md +++ b/md/UBERON/37/UBERON_0002037.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002037 * *Label* = cerebellum - * *Definition* = Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000232[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.132.810.428.200[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000100[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376] + * *Definition* = Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000232, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.132.810.428.200, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000100, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376 ] * *Comment* = note that almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem ## Synonyms - * infratentorial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Tentorium_cerebelli] - * cell bridges of the ventral striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CB] - * corpus cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:643[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:643[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * infratentorial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Tentorium_cerebelli ] + * cell bridges of the ventral striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CB ] + * corpus cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:643, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:643, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,13 +33,13 @@ * MESH:A08.186.211.132.810.428.200 * MIAA:0000110 * NIF_GrossAnatomy:birnlex_1489 - * NeuroNames:643 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1489] + * NeuroNames:643 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1489 ] * OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA * SCTID:180924008 * TAO:0000100 - * UMLS:C0007765 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1489] - * UMLS:C0007765 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellum] - * UMLS:C1268981 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1489] + * UMLS:C0007765 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1489 ] + * UMLS:C0007765 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellum ] + * UMLS:C1268981 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1489 ] * VHOG:0000024 * XAO:0003098 * ZFA:0000100 @@ -72,8 +72,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = However, although the lamprey possesses a region comparable to the cerebellum and display expression of LjFgf8/17 at the MHB (midbrain hindbrain boundary), it does not have Purkinje cells and cerebellar nuclei, as well as components of the rhombic lip-derived cerebellar and pre-cerebellar systems. It is noteworthy that the latter structures require specific expression of Pax6 in the rhombic lip of the gnathostome hindbrain. Interestingly, the lamprey rhombic lip does not express Pax6. Thus, it is tempting to speculate that in vertebrate evolution the rostral hindbrain is incapable of differentiating into the cerebellum before the co-option of Pax6 in that region. In other words, cerebellum has been brought about as an evolutionary innovation in gnathostomes, based on exaptation of MHB, rhombic lip, and some regulatory gene expression already present in the vertebrate common ancestor.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cerebellar * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002137.md b/md/UBERON/37/UBERON_0002137.md index b74456be5d..329dd1d7a3 100644 --- a/md/UBERON/37/UBERON_0002137.md +++ b/md/UBERON/37/UBERON_0002137.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002137 * *Label* = aortic valve - * *Definition* = Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_valve] + * *Definition* = Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_valve ] * *Comment* = Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets) ## Synonyms - * valva aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_valve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valva aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_valve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A07.541.510.110 * OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA * SCTID:181287002 - * UMLS:C0003501 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aortic_Valve] + * UMLS:C0003501 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aortic_Valve ] * VHOG:0000815 * Wikipedia:Aortic_valve * galen:AorticValve @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The valve between the left ventricle of the heart and the ascending aorta, consisting of three semilunar cusps. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002237.md b/md/UBERON/37/UBERON_0002237.md index eb5f0ba513..37c8b73350 100644 --- a/md/UBERON/37/UBERON_0002237.md +++ b/md/UBERON/37/UBERON_0002237.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002237 * *Label* = true rib - * *Definition* = A rib that is ventrally connected to the sternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:True_ribs] + * *Definition* = A rib that is ventrally connected to the sternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:True_ribs ] ## Synonyms * costa vera - * costae verae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:True_ribs[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * costae verae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:True_ribs, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [sternum](../../UBERON/75/UBERON_0000975.md) and [rib](../../UBERON/28/UBERON_0002228.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002337.md b/md/UBERON/37/UBERON_0002337.md index 5d155e6618..d0e88f78d7 100644 --- a/md/UBERON/37/UBERON_0002337.md +++ b/md/UBERON/37/UBERON_0002337.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002337 * *Label* = endometrial stroma - * *Definition* = The layer of connective tissue comprised of the endometrial lining of the uterus which fluctuates in thickness throughout the menstrual cycle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Endometrial_Stroma] + * *Definition* = The layer of connective tissue comprised of the endometrial lining of the uterus which fluctuates in thickness throughout the menstrual cycle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Endometrial_Stroma ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -17,7 +17,7 @@ * FMA:86487 * MA:0002734 * SCTID:254115004 - * UMLS:C0227849 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endometrial_Stroma] + * UMLS:C0227849 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endometrial_Stroma ] * ncithesaurus:Endometrial_Stroma ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002437.md b/md/UBERON/37/UBERON_0002437.md index 00a605e627..f930700def 100644 --- a/md/UBERON/37/UBERON_0002437.md +++ b/md/UBERON/37/UBERON_0002437.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002437 * *Label* = cerebral hemisphere white matter - * *Definition* = White matter that is part of a cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = White matter that is part of a cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: sometimes the term 'cerebral white matter' may be used generically but here is refers specifically to the white matter in a hemisphere. AO notes: The BTO class is inconsistent as it is part of the brain and spinal cord. ## Synonyms * cerebral hemisphere white matter - * cerebral white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000945] - * white matter structure of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61822] + * cerebral white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000945 ] + * white matter structure of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61822 ] * hemisphere white matter - * substantia medullaris cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:189[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * substantia medullaris cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:189, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,11 +24,11 @@ * FMA:61822 * MA:0000945 * NIF_GrossAnatomy:birnlex_711 - * NeuroNames:189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_711] + * NeuroNames:189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_711 ] * SCTID:361691006 - * UMLS:C0152295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_711] - * UMLS:C0152295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_White_Matter] - * UMLS:C1284115 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_711] + * UMLS:C0152295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_711 ] + * UMLS:C0152295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_White_Matter ] + * UMLS:C1284115 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_711 ] * ncithesaurus:Cerebral_White_Matter ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002537.md b/md/UBERON/37/UBERON_0002537.md index 22cc0fa23f..4d0ef6bc09 100644 --- a/md/UBERON/37/UBERON_0002537.md +++ b/md/UBERON/37/UBERON_0002537.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002537 * *Label* = hermaphrodite gonad - * *Definition* = a gonad with both testicular and ovarian aspects[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovotestis] + * *Definition* = a gonad with both testicular and ovarian aspects[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovotestis ] ## Synonyms - * hermaphrodite genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0040035] - * glandula hermaphroditica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovotestis#In_gastropods[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hermaphrodite gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovotestis#In_gastropods[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * ovotestis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000981] + * hermaphrodite genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0040035 ] + * glandula hermaphroditica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovotestis#In_gastropods, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hermaphrodite gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovotestis#In_gastropods, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * ovotestis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000981 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [oogenesis](../../GO/77/GO_0048477.md) and [capable_of](../../RO/15/RO_0002215.md) some [spermatogenesis](../../GO/83/GO_0007283.md) and [gonad](../../UBERON/91/UBERON_0000991.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002637.md b/md/UBERON/37/UBERON_0002637.md index 572a3b0fb8..bd72dc1cfc 100644 --- a/md/UBERON/37/UBERON_0002637.md +++ b/md/UBERON/37/UBERON_0002637.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002637 * *Label* = ventral anterior nucleus - * *Definition* = The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_anterior_nucleus] + * *Definition* = The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_anterior_nucleus ] ## Synonyms - * nucleus lateropolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1232] - * nucleus ventralis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1232] - * nucleus ventralis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1232] - * nucleus ventralis thalami anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1232] - * ventral anterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62184] - * ventral anterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62184] + * nucleus lateropolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1232 ] + * nucleus ventralis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1232 ] + * nucleus ventralis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1232 ] + * nucleus ventralis thalami anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1232 ] + * ventral anterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62184 ] + * ventral anterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62184 ] * ventroanterior nucleus of the thalamus - * ventroanterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1232] - * VA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1232[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_anterior_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral anterior nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VA] - * ventroanterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VA] + * ventroanterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1232 ] + * VA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1232, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_anterior_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral anterior nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VA ] + * ventroanterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VA ] ## Cross-references @@ -28,10 +28,10 @@ * EV:0100199 * FMA:62184 * NIF_GrossAnatomy:birnlex_1232 - * NeuroNames:334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1232] + * NeuroNames:334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1232 ] * SCTID:279131008 - * UMLS:C0175276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1232] - * UMLS:C0175276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus] + * UMLS:C0175276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1232 ] + * UMLS:C0175276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus ] * Wikipedia:Ventral_anterior_nucleus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002737.md b/md/UBERON/37/UBERON_0002737.md index 24900b3791..aaced5a762 100644 --- a/md/UBERON/37/UBERON_0002737.md +++ b/md/UBERON/37/UBERON_0002737.md @@ -6,14 +6,14 @@ ## Synonyms - * sulcus limitans inferior lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:828[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus limitans inferior lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:828, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:lils * FMA:74523 * NIF_GrossAnatomy:birnlex_1540 - * NeuroNames:828 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1540] + * NeuroNames:828 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1540 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002837.md b/md/UBERON/37/UBERON_0002837.md index 3a17a4b1ba..7560fb3ea3 100644 --- a/md/UBERON/37/UBERON_0002837.md +++ b/md/UBERON/37/UBERON_0002837.md @@ -6,15 +6,15 @@ ## Synonyms - * sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6008] - * sacral spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6008] + * sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6008 ] + * sacral spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6008 ] ## Cross-references * FMA:6008 * NIF_GrossAnatomy:birnlex_2602 * SCTID:278328005 - * UMLS:C0457469 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2602] + * UMLS:C0457469 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2602 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0002937.md b/md/UBERON/37/UBERON_0002937.md index b9efaa77bc..55041ce219 100644 --- a/md/UBERON/37/UBERON_0002937.md +++ b/md/UBERON/37/UBERON_0002937.md @@ -6,22 +6,22 @@ ## Synonyms - * nucleus ventralis anterior (dewulf) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_722] - * nucleus ventralis anterior, pars parvicellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_722] - * ventral anterior nucleus, pars parvicellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62191] - * ventral anterior thalamic nucleus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62191] + * nucleus ventralis anterior (dewulf) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_722 ] + * nucleus ventralis anterior, pars parvicellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_722 ] + * ventral anterior nucleus, pars parvicellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62191 ] + * ventral anterior thalamic nucleus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62191 ] * ventralis anterior (jones) - * VAPC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis anterior, pars parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:335[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvicellular part of the ventral anterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:335] + * VAPC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis anterior, pars parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:335, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvicellular part of the ventral anterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:335 ] ## Cross-references * BAMS:VAPC * FMA:62191 * NIF_GrossAnatomy:birnlex_722 - * NeuroNames:335 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_722] - * UMLS:C0228334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_722] + * NeuroNames:335 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_722 ] + * UMLS:C0228334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_722 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003037.md b/md/UBERON/37/UBERON_0003037.md index 526f345343..343c1b6daf 100644 --- a/md/UBERON/37/UBERON_0003037.md +++ b/md/UBERON/37/UBERON_0003037.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003037 * *Label* = septum - * *Definition* = a wall, dividing a cavity or structure into smaller ones[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum] + * *Definition* = a wall, dividing a cavity or structure into smaller ones[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum ] * *Comment* = general anatomical term in FMA ## Synonyms - * septa [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * septa [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = septal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003137.md b/md/UBERON/37/UBERON_0003137.md index 08876ce7fb..ebab0ead5a 100644 --- a/md/UBERON/37/UBERON_0003137.md +++ b/md/UBERON/37/UBERON_0003137.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000009 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000104 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003137 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_0003337.md b/md/UBERON/37/UBERON_0003337.md index 868f863bf3..15d0062361 100644 --- a/md/UBERON/37/UBERON_0003337.md +++ b/md/UBERON/37/UBERON_0003337.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003337 * *Label* = serosa of jejunum - * *Definition* = A serous membrane that is part of a jejunum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a jejunum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * jejunal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14955] - * jejunum serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * jejunum serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral peritoneum of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14955] + * jejunal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14955 ] + * jejunum serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * jejunum serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral peritoneum of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14955 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003437.md b/md/UBERON/37/UBERON_0003437.md index c2ef2ed1b0..f1978ed7d8 100644 --- a/md/UBERON/37/UBERON_0003437.md +++ b/md/UBERON/37/UBERON_0003437.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003437 * *Label* = eyelid nerve - * *Definition* = A nerve that is part of a eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blepharon nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blepharon nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003537.md b/md/UBERON/37/UBERON_0003537.md index 5a63fcd538..cc3f563723 100644 --- a/md/UBERON/37/UBERON_0003537.md +++ b/md/UBERON/37/UBERON_0003537.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003537 * *Label* = left lung alveolar duct - * *Definition* = An alveolar duct that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An alveolar duct that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Mice have 1 left lobe ## Synonyms - * alveolar duct of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolar duct of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:19183 * MA:0001776 - * UMLS:C1708672 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung_Alveolar_Duct] + * UMLS:C1708672 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung_Alveolar_Duct ] * ncithesaurus:Left_Lung_Alveolar_Duct ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [pulmonary alveolar duct](../../UBERON/73/UBERON_0002173.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003637.md b/md/UBERON/37/UBERON_0003637.md index df7e9597c9..849d2d1b33 100644 --- a/md/UBERON/37/UBERON_0003637.md +++ b/md/UBERON/37/UBERON_0003637.md @@ -3,38 +3,38 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003637 * *Label* = manual digit 3 phalanx - * *Definition* = A phalanx that is part of a hand digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a hand digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3 rd digit of hand digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd digit of hand long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd digit of hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 3 rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 3 rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001391] - * long bone of digit of 3 rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of 3 rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35483] - * phalanx of 3 rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 3 rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35483] - * phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 3 rd digit of hand digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd digit of hand long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd digit of hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 3 rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 3 rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001391 ] + * long bone of digit of 3 rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of 3 rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35483 ] + * phalanx of 3 rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 3 rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35483 ] + * phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -42,7 +42,7 @@ * FMA:35483 * MA:0001391 * SCTID:361785002 - * UMLS:C1708314 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_3_Phalanx] + * UMLS:C1708314 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_3_Phalanx ] * ncithesaurus:Hand_Digit_3_Phalanx ## Subsets @@ -57,15 +57,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003837.md b/md/UBERON/37/UBERON_0003837.md index 6c41308ebd..2400b09c9f 100644 --- a/md/UBERON/37/UBERON_0003837.md +++ b/md/UBERON/37/UBERON_0003837.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003837 * *Label* = thoracic segment connective tissue - * *Definition* = A portion of connective tissue that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper body connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000560] + * connective tissue of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper body connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000560 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0003937.md b/md/UBERON/37/UBERON_0003937.md index 1988c5b89d..ed2fb57d51 100644 --- a/md/UBERON/37/UBERON_0003937.md +++ b/md/UBERON/37/UBERON_0003937.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003937 * *Label* = sex gland - * *Definition* = any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000653] + * *Definition* = any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000653 ] ## Synonyms - * genitalia gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001751] - * reproductive system gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * genitalia gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001751 ] + * reproductive system gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reproductive system](../../UBERON/90/UBERON_0000990.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004037.md b/md/UBERON/37/UBERON_0004037.md index a0b3a04371..de78e4eb31 100644 --- a/md/UBERON/37/UBERON_0004037.md +++ b/md/UBERON/37/UBERON_0004037.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004037 * *Label* = obsolete retinal cone cell outer segment - * *Definition* = the retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008449] + * *Definition* = the retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008449 ] * *Comment* = request from GO as subclass of photoreceptor segment ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004037 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_0004237.md b/md/UBERON/37/UBERON_0004237.md index 8ba9d0af21..f6b1480564 100644 --- a/md/UBERON/37/UBERON_0004237.md +++ b/md/UBERON/37/UBERON_0004237.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004237 * *Label* = blood vessel smooth muscle - * *Definition* = smooth muscle found within, and composing the majority of the wall of blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vascular_smooth_muscle] + * *Definition* = smooth muscle found within, and composing the majority of the wall of blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vascular_smooth_muscle ] * *Comment* = Function notes: Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension. ## Synonyms - * blood vessel involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005321] + * blood vessel involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005321 ] * vascular smooth muscle tissue ## Cross-references @@ -25,7 +25,7 @@ * MA:0000710 * MESH:A02.633.570.491 * TAO:0005321 - * UMLS:C1519956 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vascular_Smooth_Muscle_Tissue] + * UMLS:C1519956 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vascular_Smooth_Muscle_Tissue ] * Wikipedia:Vascular_smooth_muscle * ZFA:0005321 * ncithesaurus:Vascular_Smooth_Muscle_Tissue @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010508 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004337.md b/md/UBERON/37/UBERON_0004337.md index 942e2a9eb4..61f94a9216 100644 --- a/md/UBERON/37/UBERON_0004337.md +++ b/md/UBERON/37/UBERON_0004337.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004337 * *Label* = distal phalanx of manual digit 1 - * *Definition* = A distal phalanx that is part of a hand digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a hand digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: The human pollical distal phalanx (PDP) has a pronounced insertion for the flexor pollicis longus (asymmetric towards the radial side), an ungual fossa, and a pair of dissymmetric ungual spines (the ulnar being more prominent). This asymmetry is necessary to ensure that the thumb pulp is always facing the pulps of the other digits, an osteological configuration which provides the maximum contact surface with held objects.[WP] ## Synonyms - * PDP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_phalanges#Thumb] - * distal phalanx of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23945] - * distal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first distal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23945] - * pollical distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_phalanges#Thumb] - * thumb distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * PDP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_phalanges#Thumb ] + * distal phalanx of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23945 ] + * distal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first distal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23945 ] + * pollical distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_phalanges#Thumb ] + * thumb distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004437.md b/md/UBERON/37/UBERON_0004437.md index 3e4746438c..f308edd6e5 100644 --- a/md/UBERON/37/UBERON_0004437.md +++ b/md/UBERON/37/UBERON_0004437.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004437 * *Label* = proximal epiphysis of middle phalanx of manual digit 3 - * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of middle phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37514] - * base of middle phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37514] - * base of middle phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37514] - * base of middle phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37514] - * proximal epiphysis of middle phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37514[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of middle phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37514 ] + * base of middle phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37514 ] + * base of middle phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37514 ] + * base of middle phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37514 ] + * proximal epiphysis of middle phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37514, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of manual digit 3](../../UBERON/21/UBERON_0004321.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004537.md b/md/UBERON/37/UBERON_0004537.md index 1b1b775de7..c9e9e3d82c 100644 --- a/md/UBERON/37/UBERON_0004537.md +++ b/md/UBERON/37/UBERON_0004537.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004537 * *Label* = blood vasculature - * *Definition* = a vascular network consisting of blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = a vascular network consisting of blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * blood vascular network * set of blood vessels - * blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001079] + * blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001079 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004637.md b/md/UBERON/37/UBERON_0004637.md index 41efce8019..c76204534c 100644 --- a/md/UBERON/37/UBERON_0004637.md +++ b/md/UBERON/37/UBERON_0004637.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004637 * *Label* = otic capsule - * *Definition* = The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001500[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/otic+capsule[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Otic_capsule] + * *Definition* = The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001500, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/otic+capsule, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Otic_capsule ] * *Comment* = Taxon notes: developmental relationships need to be checked ## Synonyms - * otic capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001500] - * auditory capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000854] + * otic capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001500 ] + * auditory capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000854 ] * otic region * periotic - * periotic capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000854] + * periotic capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000854 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [otic capsule endochondral element](../../UBERON/20/UBERON_0015020.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of otic and occipital (AAO:0000993)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Otic capsules develop around the parts of the ear that lie within the chondrocranium. This part of the ear, known as the inner ear, is composed of the semicircular ducts and associated sacs that contain the receptive cells for equilibrium and hearing (reference 1); (...) considerations have led to our rethinking issues related to the origin of several aspects of vertebrate hearing, and to the view that many basic auditory functions evolved very early in vertebrate history, and that the functions observed in more `advanced' vertebrates, such as birds and mammals, are frequently modifications of themes first encountered in fishes, and perhaps even more ancestral animals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004737.md b/md/UBERON/37/UBERON_0004737.md index 26cecd8bb1..30aca2fc2b 100644 --- a/md/UBERON/37/UBERON_0004737.md +++ b/md/UBERON/37/UBERON_0004737.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004737 * *Label* = metanephric collecting duct - * *Definition* = A collecting duct of renal tubule that is part of a metanephros [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collecting duct of renal tubule that is part of a metanephros [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * collecting duct of metanephros - * metanephric collecting tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000983] + * metanephric collecting tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000983 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0004937.md b/md/UBERON/37/UBERON_0004937.md index f5a933448a..92693c1292 100644 --- a/md/UBERON/37/UBERON_0004937.md +++ b/md/UBERON/37/UBERON_0004937.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004937 * *Label* = submucosa of pylorus - * *Definition* = A submucosa that is part of a pylorus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a pylorus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pyloric part of stomach submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pyloric part of stomach submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * pyloric submucosa - * pylorus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17462] - * pylorus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric region submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of pyloric part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pylorus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17462 ] + * pylorus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric region submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of pyloric part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pylorus](../../UBERON/66/UBERON_0001166.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005037.md b/md/UBERON/37/UBERON_0005037.md index 5d6b45bcf0..83ac961164 100644 --- a/md/UBERON/37/UBERON_0005037.md +++ b/md/UBERON/37/UBERON_0005037.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005037 * *Label* = mucosa of lobar bronchus - * *Definition* = A mucosa that is part of a lobar bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a lobar bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lobar bronchial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62668] - * lobar bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobar bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobar bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobar bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lobar bronchial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62668 ] + * lobar bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobar bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobar bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobar bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005137.md b/md/UBERON/37/UBERON_0005137.md index a512f09f21..baf2ac4341 100644 --- a/md/UBERON/37/UBERON_0005137.md +++ b/md/UBERON/37/UBERON_0005137.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005137 * *Label* = metanephric capsule - * *Definition* = The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072213] + * *Definition* = The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072213 ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [kidney capsule](../../UBERON/15/UBERON_0002015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -30,8 +30,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005112 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005337.md b/md/UBERON/37/UBERON_0005337.md index 4dadf07b50..ecfaf64010 100644 --- a/md/UBERON/37/UBERON_0005337.md +++ b/md/UBERON/37/UBERON_0005337.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005337 * *Label* = outflow tract of ventricle - * *Definition* = A ventricular outflow tract is a portion of either the left ventricle or right ventricle of the heart through which blood passes in order to enter the great arteries. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricular_outflow_tract] + * *Definition* = A ventricular outflow tract is a portion of either the left ventricle or right ventricle of the heart through which blood passes in order to enter the great arteries. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricular_outflow_tract ] ## Synonyms - * heart ventricle outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010224] + * heart ventricle outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010224 ] * outflow part of ventricle - * ventricular outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricular_outflow_tract] + * ventricular outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricular_outflow_tract ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract](../../UBERON/45/UBERON_0004145.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005437.md b/md/UBERON/37/UBERON_0005437.md index 26fcf3950c..572f93f43e 100644 --- a/md/UBERON/37/UBERON_0005437.md +++ b/md/UBERON/37/UBERON_0005437.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005437 * *Label* = conus medullaris - * *Definition* = The conus medullaris is the terminal end of the spinal cord. It occurs near lumbar vertebral levels 1 (L1) and 2 (L2). After the spinal cord tapers out, the spinal nerves continue as dangling nerve roots called cauda equina. This terminal nerve root tail is referred to as the filum terminale. The upper end of the conus medullaris is usually not well defined. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conus_medullaris] + * *Definition* = The conus medullaris is the terminal end of the spinal cord. It occurs near lumbar vertebral levels 1 (L1) and 2 (L2). After the spinal cord tapers out, the spinal nerves continue as dangling nerve roots called cauda equina. This terminal nerve root tail is referred to as the filum terminale. The upper end of the conus medullaris is usually not well defined. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conus_medullaris ] ## Synonyms @@ -18,7 +18,7 @@ * FMA:74897 * NeuroNames:1627 * SCTID:315472009 - * UMLS:C0149601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Conus_Medullaris] + * UMLS:C0149601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Conus_Medullaris ] * VHOG:0000546 * Wikipedia:Conus_medullaris * http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray662.png @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The conical end of the spinal cord, which continues with the filum terminale. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005637.md b/md/UBERON/37/UBERON_0005637.md index 9e047472bd..f6cdc5549b 100644 --- a/md/UBERON/37/UBERON_0005637.md +++ b/md/UBERON/37/UBERON_0005637.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005637 * *Label* = pyloric region epithelium - * *Definition* = An epithelium that is part of a pylorus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pylorus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pylorus](../../UBERON/66/UBERON_0001166.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005737.md b/md/UBERON/37/UBERON_0005737.md index a22b4ff77b..725aef572a 100644 --- a/md/UBERON/37/UBERON_0005737.md +++ b/md/UBERON/37/UBERON_0005737.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005737 * *Label* = swim bladder tunica externa - * *Definition* = Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001700[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http:www.briancoad.com/Dictionary/T.htm] + * *Definition* = Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001700, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http:www.briancoad.com/Dictionary/T.htm ] * *Comment* = the primary reason this term is manifest in uberon to disambiguate from a structure with the same/similar name ## Synonyms - * tunica externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001700[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * tunica externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001700, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0005837.md b/md/UBERON/37/UBERON_0005837.md index ee0ac6e053..ff25e2851f 100644 --- a/md/UBERON/37/UBERON_0005837.md +++ b/md/UBERON/37/UBERON_0005837.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005837 * *Label* = fasciculus of spinal cord - * *Definition* = A fascicle that is part of a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fascicle that is part of a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * spinal cord fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75799] + * spinal cord fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75799 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve fasciculus](../../UBERON/19/UBERON_0001019.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006137.md b/md/UBERON/37/UBERON_0006137.md index b503007b2f..bc63770102 100644 --- a/md/UBERON/37/UBERON_0006137.md +++ b/md/UBERON/37/UBERON_0006137.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006137 * *Label* = proper palmar digital artery - * *Definition* = The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_palmar_digital_arteries] + * *Definition* = The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_palmar_digital_arteries ] * *Comment* = the MA term, even though plural, represents the singular, as it is an isa child of artery ## Synonyms - * arteriae digitales palmares propriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70804[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proper palmal digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001959] - * proper palmar digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001959] - * proper palmar digital arteries set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70804] - * arteriae digitales palmares propriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_palmar_digital_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proper volar digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_palmar_digital_arteries] - * proper volar digital artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_palmar_digital_arteries] - * set of proper palmar digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70804] + * arteriae digitales palmares propriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70804, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proper palmal digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001959 ] + * proper palmar digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001959 ] + * proper palmar digital arteries set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70804 ] + * arteriae digitales palmares propriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_palmar_digital_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proper volar digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_palmar_digital_arteries ] + * proper volar digital artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_palmar_digital_arteries ] + * set of proper palmar digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70804 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006337.md b/md/UBERON/37/UBERON_0006337.md index 2757b7c463..0578b05184 100644 --- a/md/UBERON/37/UBERON_0006337.md +++ b/md/UBERON/37/UBERON_0006337.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006337 * *Label* = distal early tubule - * *Definition* = Portion of the renal tubule which is just posterior to the proximal straight tubule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005293] + * *Definition* = Portion of the renal tubule which is just posterior to the proximal straight tubule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005293 ] * *Comment* = in XAO this is pronephric; in ZFA it is an adult structure. we treat it here as generic. consider placing XAO under proneprhic subclass. check relationship with EDCT. ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the pronephric tubule that is immediately posterior to the late proximal tubule.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006537.md b/md/UBERON/37/UBERON_0006537.md index ef26c29e4e..159aaa0b16 100644 --- a/md/UBERON/37/UBERON_0006537.md +++ b/md/UBERON/37/UBERON_0006537.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006537 * *Label* = female reproductive system fluid/secretion - * *Definition* = A portion of organism substance that secreted_by a female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of organism substance that secreted_by a female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006637.md b/md/UBERON/37/UBERON_0006637.md index 7a9a68d25b..7b13d7247c 100644 --- a/md/UBERON/37/UBERON_0006637.md +++ b/md/UBERON/37/UBERON_0006637.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006637 * *Label* = coeliac trunk - * *Definition* = The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] + * *Definition* = The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] ## Synonyms - * Haller's tripus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14812] - * coeliac trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14812] - * coeliaco-mesenteric trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14812] - * arteria celiaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * celiac axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * celiac trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * coeliac axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * coeliac trunck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * coeliac trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * truncus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] + * Haller's tripus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14812 ] + * coeliac trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14812 ] + * coeliaco-mesenteric trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14812 ] + * arteria celiaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * celiac axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * celiac trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * coeliac axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * coeliac trunck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * coeliac trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * truncus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006837.md b/md/UBERON/37/UBERON_0006837.md index 1c2583539b..4029034642 100644 --- a/md/UBERON/37/UBERON_0006837.md +++ b/md/UBERON/37/UBERON_0006837.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006837 * *Label* = tegmen tympani - * *Definition* = The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://education.yahoo.com/reference/gray/subjects/subject/230] + * *Definition* = The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://education.yahoo.com/reference/gray/subjects/subject/230 ] * *Comment* = todo - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal.[http://www.palaeos.com] ## Synonyms - * paries tegmentalis cavi tympani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tegmental roof of tympanic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56002] - * tegmental wall of tympanic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56002] - * crista parotica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY] - * crista prootica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000116[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY] - * processus muscularis capsulae auditivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000116] - * processus squamosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY] + * paries tegmentalis cavi tympani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tegmental roof of tympanic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56002 ] + * tegmental wall of tympanic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56002 ] + * crista parotica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY ] + * crista prootica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000116, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY ] + * processus muscularis capsulae auditivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000116 ] + * processus squamosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0006937.md b/md/UBERON/37/UBERON_0006937.md index 9ade0b1274..5d67876ef1 100644 --- a/md/UBERON/37/UBERON_0006937.md +++ b/md/UBERON/37/UBERON_0006937.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006937 * *Label* = inner ear epithelium - * *Definition* = An epithelium that is part of a internal ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a internal ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [internal ear](../../UBERON/46/UBERON_0001846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0007037.md b/md/UBERON/37/UBERON_0007037.md index 58ccec5fc7..8f739072f9 100644 --- a/md/UBERON/37/UBERON_0007037.md +++ b/md/UBERON/37/UBERON_0007037.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sensory perception of mechanical stimulus](../../GO/54/GO_0050954.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0007237.md b/md/UBERON/37/UBERON_0007237.md index 09f9079522..9d6f308763 100644 --- a/md/UBERON/37/UBERON_0007237.md +++ b/md/UBERON/37/UBERON_0007237.md @@ -7,9 +7,9 @@ ## Synonyms - * ventral pharyngeal arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000510] - * ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000510] - * ventral visceral arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000510] + * ventral pharyngeal arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000510 ] + * ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000510 ] + * ventral visceral arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000510 ] ## Cross-references @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0007637.md b/md/UBERON/37/UBERON_0007637.md index 916a26a6c3..c3b3fba069 100644 --- a/md/UBERON/37/UBERON_0007637.md +++ b/md/UBERON/37/UBERON_0007637.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007637 * *Label* = hippocampus stratum lucidum - * *Definition* = A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_lucidum_of_hippocampus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + nif_annot:NeuroNames_defSource] + * *Definition* = A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_lucidum_of_hippocampus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = nif_annot:NeuroNames_defSource ] ## Synonyms - * stratum lucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4108] - * stratum lucidum hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_lucidum_of_hippocampus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stratum lucidum hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SLu] + * stratum lucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4108 ] + * stratum lucidum hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_lucidum_of_hippocampus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stratum lucidum hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SLu ] ## Cross-references * BAMS:SLu * NIF_GrossAnatomy:birnlex_4108 * NeuroNames:1777 - * OldNeuroNames:-975815906 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4108] + * OldNeuroNames:-975815906 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4108 ] * SCTID:419156002 - * UMLS:C0221922 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Lucidum] + * UMLS:C0221922 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Lucidum ] * Wikipedia:Stratum_lucidum_of_hippocampus * ncithesaurus:Stratum_Lucidum @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0007837.md b/md/UBERON/37/UBERON_0007837.md index c90a8e038d..2fe2df6d4b 100644 --- a/md/UBERON/37/UBERON_0007837.md +++ b/md/UBERON/37/UBERON_0007837.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007837 * *Label* = thoracic spinal cord ventral commissure - * *Definition* = A spinal cord ventral commissure that is part of a thoracic spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord ventral commissure that is part of a thoracic spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * thoracic spinal cord anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1556] + * thoracic spinal cord anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1556 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [spinal cord ventral commissure](../../UBERON/70/UBERON_0004170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0008337.md b/md/UBERON/37/UBERON_0008337.md index dd538e2096..9eec24592c 100644 --- a/md/UBERON/37/UBERON_0008337.md +++ b/md/UBERON/37/UBERON_0008337.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008337 * *Label* = inguinal part of abdomen - * *Definition* = The external junctural region between the lower part of the abdomen and the thigh. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.047.365] + * *Definition* = The external junctural region between the lower part of the abdomen and the thigh. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.047.365 ] * *Comment* = galen treats inguinal region and groin as distinct ## Synonyms - * groin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24040] - * iliac fossa viewed surgically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24040] - * iliac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24040] - * inguen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inguinal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24040] - * iliac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003358] - * inguen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003358] - * inguinal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003358] + * groin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24040 ] + * iliac fossa viewed surgically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24040 ] + * iliac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24040 ] + * inguen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inguinal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24040 ] + * iliac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003358 ] + * inguen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003358 ] + * inguinal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003358 ] ## Cross-references @@ -26,7 +26,7 @@ * GAID:27 * MESH:A01.047.365 * SCTID:243962005 - * UMLS:C0018246 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inguinal_Region] + * UMLS:C0018246 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inguinal_Region ] * galen:InguinalRegion * ncithesaurus:Inguinal_Region @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0008437.md b/md/UBERON/37/UBERON_0008437.md index b81dc9c628..f2c9c444f6 100644 --- a/md/UBERON/37/UBERON_0008437.md +++ b/md/UBERON/37/UBERON_0008437.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008437 * *Label* = posterior arch of atlas - * *Definition* = In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_arch_of_atlas] + * *Definition* = In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_arch_of_atlas ] ## Synonyms * arcus posterior - * posterior arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_arch] + * posterior arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_arch ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0008537.md b/md/UBERON/37/UBERON_0008537.md index e379b04f75..daa7c77878 100644 --- a/md/UBERON/37/UBERON_0008537.md +++ b/md/UBERON/37/UBERON_0008537.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008537 * *Label* = quadratus femoris - * *Definition* = The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadratus_femoris_muscle] + * *Definition* = The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadratus_femoris_muscle ] ## Synonyms - * musculus quadratus femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadratus_femoris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * quadratus femoris muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadratus_femoris_muscle] + * musculus quadratus femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadratus_femoris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * quadratus femoris muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadratus_femoris_muscle ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0008837.md b/md/UBERON/37/UBERON_0008837.md index ad6b7ae90a..ee78baee4c 100644 --- a/md/UBERON/37/UBERON_0008837.md +++ b/md/UBERON/37/UBERON_0008837.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0008937.md b/md/UBERON/37/UBERON_0008937.md index da3ae1492e..1016e5d25a 100644 --- a/md/UBERON/37/UBERON_0008937.md +++ b/md/UBERON/37/UBERON_0008937.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008937 * *Label* = visceral hump - * *Definition* = Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001448[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.britannica.com/EBchecked/topic/630349/visceral-hump] + * *Definition* = Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001448, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.britannica.com/EBchecked/topic/630349/visceral-hump ] ## Synonyms - * visceral sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001448] + * visceral sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001448 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0009537.md b/md/UBERON/37/UBERON_0009537.md index 53174fbcc4..7a8a6fdc1d 100644 --- a/md/UBERON/37/UBERON_0009537.md +++ b/md/UBERON/37/UBERON_0009537.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009537 * *Label* = vascular element of right lung - * *Definition* = A vascular plexus that is part of a right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vascular plexus that is part of a right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [vascular plexus](../../UBERON/29/UBERON_0005629.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0009637.md b/md/UBERON/37/UBERON_0009637.md index f3bfcf9af6..f044136497 100644 --- a/md/UBERON/37/UBERON_0009637.md +++ b/md/UBERON/37/UBERON_0009637.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0009737.md b/md/UBERON/37/UBERON_0009737.md index bfbc21acaa..c4c4ff13fa 100644 --- a/md/UBERON/37/UBERON_0009737.md +++ b/md/UBERON/37/UBERON_0009737.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009737 * *Label* = sublaminar layers S1 or S2 or S3 or S4 - * *Definition* = One of sublaminar layers S1, S2, S3, or S4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr] + * *Definition* = One of sublaminar layers S1, S2, S3, or S4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md)or[sublaminar layer S2](../../UBERON/23/UBERON_0008923.md)or[sublaminar layer S3](../../UBERON/24/UBERON_0008924.md)or[sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0010137.md b/md/UBERON/37/UBERON_0010137.md index e284922de0..89468afb91 100644 --- a/md/UBERON/37/UBERON_0010137.md +++ b/md/UBERON/37/UBERON_0010137.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010137 * *Label* = polarized epithelium - * *Definition* = A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001738] + * *Definition* = A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001738 ] ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010137 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000001 +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_0010337.md b/md/UBERON/37/UBERON_0010337.md index d9fae9253a..5b56f330f0 100644 --- a/md/UBERON/37/UBERON_0010337.md +++ b/md/UBERON/37/UBERON_0010337.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010337 * *Label* = mandibular process mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a mandibular process mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mandibular process mesenchyme](../../UBERON/05/UBERON_0006905.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0010437.md b/md/UBERON/37/UBERON_0010437.md index 36f6d0bf9f..9039fdb7da 100644 --- a/md/UBERON/37/UBERON_0010437.md +++ b/md/UBERON/37/UBERON_0010437.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010437 * *Label* = zygomaticus muscle - * *Definition* = One of: zygomaticus major, zygomaticus minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of: zygomaticus major, zygomaticus minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = origin: posterior braincase ## Synonyms * m. zygomaticus - * zygomaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002404] + * zygomaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002404 ] * m. levator nasii ## Cross-references * MA:0002404 - * UMLS:C1710708 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zygomaticus] + * UMLS:C1710708 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zygomaticus ] * ncithesaurus:Zygomaticus ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0010537.md b/md/UBERON/37/UBERON_0010537.md index 7e5479edb3..4a1c9cfdb0 100644 --- a/md/UBERON/37/UBERON_0010537.md +++ b/md/UBERON/37/UBERON_0010537.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010537 * *Label* = mesonephric nephron progenitor - * *Definition* = Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005587] + * *Definition* = Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005587 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron progenitor](../../UBERON/36/UBERON_0010536.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0010737.md b/md/UBERON/37/UBERON_0010737.md index cfdf6066b2..2f92aabb2d 100644 --- a/md/UBERON/37/UBERON_0010737.md +++ b/md/UBERON/37/UBERON_0010737.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010737 * *Label* = distal tarsal bone 4 - * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005055] + * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005055 ] * *Comment* = We need to restrict the logical definition such that it is *only* connecting to metatarsal 4 ## Synonyms - * distal tarsal 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005055] - * tarsal 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000932] - * cuboideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005055] + * distal tarsal 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005055 ] + * tarsal 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000932 ] + * cuboideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005055 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone 4 endochondral element](../../UBERON/11/UBERON_0015111.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0010937.md b/md/UBERON/37/UBERON_0010937.md index c288c58c2d..7c64ed9ec8 100644 --- a/md/UBERON/37/UBERON_0010937.md +++ b/md/UBERON/37/UBERON_0010937.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010937 * *Label* = salpingopharyngeus muscle - * *Definition* = The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salpingopharyngeus_muscle] + * *Definition* = The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salpingopharyngeus_muscle ] ## Synonyms - * salpingopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salpingopharyngeus_muscle] - * musculus salpingopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salpingopharyngeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * salpingopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salpingopharyngeus_muscle ] + * musculus salpingopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salpingopharyngeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46665 * SCTID:244807009 - * UMLS:C1521985 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Salpingopharyngeus] + * UMLS:C1521985 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Salpingopharyngeus ] * Wikipedia:Salpingopharyngeus_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png * ncithesaurus:Salpingopharyngeus @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0011137.md b/md/UBERON/37/UBERON_0011137.md index 916ef46c97..cce0408793 100644 --- a/md/UBERON/37/UBERON_0011137.md +++ b/md/UBERON/37/UBERON_0011137.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011137 * *Label* = axial skeletal system - * *Definition* = Subdivision of the skeletal system which consists of the axial skeleton plus associated joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of the skeletal system which consists of the axial skeleton plus associated joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0011237.md b/md/UBERON/37/UBERON_0011237.md index f0ccf347e0..e7eba5fa9b 100644 --- a/md/UBERON/37/UBERON_0011237.md +++ b/md/UBERON/37/UBERON_0011237.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011237 * *Label* = visceral fascia - * *Definition* = Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_fascia] + * *Definition* = Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_fascia ] ## Synonyms - * parietal fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_fascia] + * parietal fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_fascia ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0011637.md b/md/UBERON/37/UBERON_0011637.md index 5d6a7362a3..e0466c6101 100644 --- a/md/UBERON/37/UBERON_0011637.md +++ b/md/UBERON/37/UBERON_0011637.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011637 * *Label* = prearticular bone - * *Definition* = Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000458] + * *Definition* = Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000458 ] ## Synonyms - * prearticular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000458] + * prearticular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000458 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0011737.md b/md/UBERON/37/UBERON_0011737.md index 50251cf40a..24b2ccc3e0 100644 --- a/md/UBERON/37/UBERON_0011737.md +++ b/md/UBERON/37/UBERON_0011737.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011737 * *Label* = caudate lobe hepatic sinusoids - * *Definition* = A hepatic sinusoid that is part of a caudate lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic sinusoid that is part of a caudate lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * liver right caudate lobe hepatic sinusoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001006] + * liver right caudate lobe hepatic sinusoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001006 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic sinusoid](../../UBERON/81/UBERON_0001281.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudate lobe of liver](../../UBERON/17/UBERON_0001117.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0011937.md b/md/UBERON/37/UBERON_0011937.md index 96007454ad..11bfa5bf91 100644 --- a/md/UBERON/37/UBERON_0011937.md +++ b/md/UBERON/37/UBERON_0011937.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011937 * *Label* = vibrissa root sheath - * *Definition* = A hair root sheath that is part of a vibrissa unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hair root sheath that is part of a vibrissa unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * root sheath of sinus hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26765] + * root sheath of sinus hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26765 ] * root sheath of vibrissa * root sheath of vibrissa hair @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hair root sheath](../../UBERON/33/UBERON_0005933.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa unit](../../UBERON/33/UBERON_0011933.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011937 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0012137.md b/md/UBERON/37/UBERON_0012137.md index 2b0de6fe15..05d6620388 100644 --- a/md/UBERON/37/UBERON_0012137.md +++ b/md/UBERON/37/UBERON_0012137.md @@ -8,11 +8,11 @@ * hind digit 7 * hind digit VII - * hind limb digit 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit VII * seventh toe * toe 7 - * foot digit 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0012237.md b/md/UBERON/37/UBERON_0012237.md index 0d74fa7a8b..d11154c416 100644 --- a/md/UBERON/37/UBERON_0012237.md +++ b/md/UBERON/37/UBERON_0012237.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012237 * *Label* = superior phrenic vein - * *Definition* = The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_phrenic_vein] + * *Definition* = The superior phrenic vein, i.e. , the vein accompanying the pericardiacophrenic artery, usually opens into the internal mammary vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_phrenic_vein ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0012337.md b/md/UBERON/37/UBERON_0012337.md index 5a09d80643..72cb2f731c 100644 --- a/md/UBERON/37/UBERON_0012337.md +++ b/md/UBERON/37/UBERON_0012337.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012337 * *Label* = cauda equina - * *Definition* = The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space. In humans, because the spinal cord stops growing in infancy while the bones of the spine continue growing, the spinal cord in adults ends at about the level of the vertebra L1/L2, and at birth at L3. However there is some variation in adults and the cord may end anywhere between vertebrae T12 to L3. Individual spinal nerve roots arise from the spinal cord as they do closer to the head, but as the differential growth occurs the top end of the nerve stays attached to the spinal cord and the lower end of the nerve exits the spinal column at its proper level, this results in a 'bundle'-like structure of nerve fibres that extends caudally from the end of the spinal cord, gradually declining in number further down as individual pairs leave the spinal column. At the base of the Cauda Equina, there are approximately 10 fiber pairs, 3-5 lumbar, 5 sacral, and the single coccygeal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cauda_equina] + * *Definition* = The cauda equina is a structure within the lower end of the spinal column of most vertebrates, that consists of nerve roots and rootlets from above. The space in which the cerebrospinal fluid is present is actually an extension of the subarachnoid space. In humans, because the spinal cord stops growing in infancy while the bones of the spine continue growing, the spinal cord in adults ends at about the level of the vertebra L1/L2, and at birth at L3. However there is some variation in adults and the cord may end anywhere between vertebrae T12 to L3. Individual spinal nerve roots arise from the spinal cord as they do closer to the head, but as the differential growth occurs the top end of the nerve stays attached to the spinal cord and the lower end of the nerve exits the spinal column at its proper level, this results in a 'bundle'-like structure of nerve fibres that extends caudally from the end of the spinal cord, gradually declining in number further down as individual pairs leave the spinal column. At the base of the Cauda Equina, there are approximately 10 fiber pairs, 3-5 lumbar, 5 sacral, and the single coccygeal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cauda_equina ] ## Synonyms - * filum terminale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.800.720.725.150] + * filum terminale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.800.720.725.150 ] ## Cross-references @@ -15,7 +15,7 @@ * MESH:A08.800.800.720.725.150 * NeuroNames:1626 * SCTID:263377004 - * UMLS:C0007458 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cauda_Equina] + * UMLS:C0007458 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cauda_Equina ] * Wikipedia:Cauda_equina * ncithesaurus:Cauda_Equina @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012337 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0012437.md b/md/UBERON/37/UBERON_0012437.md index 7b0addfaa6..d9f90b6cb2 100644 --- a/md/UBERON/37/UBERON_0012437.md +++ b/md/UBERON/37/UBERON_0012437.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [adjacent to](../../RO/20/RO_0002220.md) some [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [anatomical line](../../UBERON/00/UBERON_0006800.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0013137.md b/md/UBERON/37/UBERON_0013137.md index 2142d82d2d..240a8ebbd8 100644 --- a/md/UBERON/37/UBERON_0013137.md +++ b/md/UBERON/37/UBERON_0013137.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013137 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0013237.md b/md/UBERON/37/UBERON_0013237.md index 7eb13f1f29..efc601ced8 100644 --- a/md/UBERON/37/UBERON_0013237.md +++ b/md/UBERON/37/UBERON_0013237.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013237 * *Label* = genital papilla of vulva - * *Definition* = The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Genital_papilla] + * *Definition* = The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Genital_papilla ] ## Synonyms * mammalian genital papilla - * genital papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * genital papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013237 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0013637.md b/md/UBERON/37/UBERON_0013637.md index ab72a0a0cd..0e9c3a6e63 100644 --- a/md/UBERON/37/UBERON_0013637.md +++ b/md/UBERON/37/UBERON_0013637.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013637 * *Label* = prostate gland lateral lobe - * *Definition* = The prostate gland lobe that is located on the lateral side of the organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Lateral_Lobe_of_the_Prostate] + * *Definition* = The prostate gland lobe that is located on the lateral side of the organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Lateral_Lobe_of_the_Prostate ] ## Synonyms - * lateral lobe of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19577] - * lateral lobe of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19577] + * lateral lobe of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19577 ] + * lateral lobe of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19577 ] * lateral prostate - * lateral ventral lobe of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MorphoBank:MorphoBank] + * lateral ventral lobe of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MorphoBank:MorphoBank ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_lateral_side_of](../../BSPO/26/BSPO_0000126.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) and [lobe of prostate](../../UBERON/28/UBERON_0001328.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0013737.md b/md/UBERON/37/UBERON_0013737.md index 68ad8d6995..f332d80086 100644 --- a/md/UBERON/37/UBERON_0013737.md +++ b/md/UBERON/37/UBERON_0013737.md @@ -6,8 +6,8 @@ ## Synonyms - * PN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21653852[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Phrenic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PN] + * PN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21653852, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Phrenic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013737 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0014437.md b/md/UBERON/37/UBERON_0014437.md index e15994781f..fa131cabe5 100644 --- a/md/UBERON/37/UBERON_0014437.md +++ b/md/UBERON/37/UBERON_0014437.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014437 * *Label* = iliac crest - * *Definition* = Is part of the pelvis on the edge of the wing of the ilium. Round in shape, dorsal to the pubis and ischium. Acts as structrure that muscles can attach too. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:931] + * *Definition* = Is part of the pelvis on the edge of the wing of the ilium. Round in shape, dorsal to the pubis and ischium. Acts as structrure that muscles can attach too. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:931 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014437 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0014537.md b/md/UBERON/37/UBERON_0014537.md index 1f41ad4af0..f258ab9b8f 100644 --- a/md/UBERON/37/UBERON_0014537.md +++ b/md/UBERON/37/UBERON_0014537.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014537 * *Label* = periamygdaloid cortex - * *Definition* = Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144210] + * *Definition* = Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144210 ] ## Synonyms - * periamygdaloid cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144210] - * periamygdaloid area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144210] + * periamygdaloid cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144210 ] + * periamygdaloid area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144210 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014537 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0014637.md b/md/UBERON/37/UBERON_0014637.md index 2294b26d34..1665dbd56b 100644 --- a/md/UBERON/37/UBERON_0014637.md +++ b/md/UBERON/37/UBERON_0014637.md @@ -6,14 +6,14 @@ ## Synonyms - * thoracic spinal cord white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_999[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * thoracic spinal cord white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_999, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_999 * SCTID:367881009 - * UMLS:C0228633 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_999] - * UMLS:C1288557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_999] + * UMLS:C0228633 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_999 ] + * UMLS:C1288557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_999 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [white matter of spinal cord](../../UBERON/18/UBERON_0002318.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014637 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0014837.md b/md/UBERON/37/UBERON_0014837.md index cb7528cfb2..6eff82a34e 100644 --- a/md/UBERON/37/UBERON_0014837.md +++ b/md/UBERON/37/UBERON_0014837.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014837 * *Label* = pectoantebrachialis - * *Definition* = The most superficial of pectoral muscles, found in some mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = The most superficial of pectoral muscles, found in some mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014837 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_0015037.md b/md/UBERON/37/UBERON_0015037.md index 701cb370c1..337949397f 100644 --- a/md/UBERON/37/UBERON_0015037.md +++ b/md/UBERON/37/UBERON_0015037.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015037 * *Label* = pedal digit 1 metatarsal endochondral element - * *Definition* = A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 1 metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 1 metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 1 metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 1 metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [metatarsal bone of digit 1](../../UBERON/50/UBERON_0003650.md)or[pedal digit 1 metatarsal cartilage element](../../UBERON/57/UBERON_0010557.md)or[pedal digit 1 metatarsal pre-cartilage condensation](../../UBERON/47/UBERON_0010547.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015037 + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000237.md b/md/UBERON/37/UBERON_2000237.md index 21ce4709f7..94e114b4ce 100644 --- a/md/UBERON/37/UBERON_2000237.md +++ b/md/UBERON/37/UBERON_2000237.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000337.md b/md/UBERON/37/UBERON_2000337.md index 35747b19e6..31569d1939 100644 --- a/md/UBERON/37/UBERON_2000337.md +++ b/md/UBERON/37/UBERON_2000337.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000337 * *Label* = basioccipital posterodorsal region - * *Definition* = Endochondral bone which is the posterodorsal region of the basioccipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone which is the posterodorsal region of the basioccipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000437.md b/md/UBERON/37/UBERON_2000437.md index e617e309e4..6a64438c28 100644 --- a/md/UBERON/37/UBERON_2000437.md +++ b/md/UBERON/37/UBERON_2000437.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000437 * *Label* = caudal fin actinotrichium - * *Definition* = Actinotrichium that is part of the caudal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the caudal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal fin](../../UBERON/64/UBERON_4000164.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000637.md b/md/UBERON/37/UBERON_2000637.md index 2a6b6b0002..7f4621a704 100644 --- a/md/UBERON/37/UBERON_2000637.md +++ b/md/UBERON/37/UBERON_2000637.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000637 * *Label* = claustrum cartilage - * *Definition* = Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * first Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000637] + * first Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000637 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000837.md b/md/UBERON/37/UBERON_2000837.md index 3c89aed8f7..17d66df36f 100644 --- a/md/UBERON/37/UBERON_2000837.md +++ b/md/UBERON/37/UBERON_2000837.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000837 * *Label* = sclerotome somite 6 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2000937.md b/md/UBERON/37/UBERON_2000937.md index 3993d19365..4751a50809 100644 --- a/md/UBERON/37/UBERON_2000937.md +++ b/md/UBERON/37/UBERON_2000937.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000937 * *Label* = hypaxial region somite 13 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001037.md b/md/UBERON/37/UBERON_2001037.md index b2d28f486c..af3e7b6987 100644 --- a/md/UBERON/37/UBERON_2001037.md +++ b/md/UBERON/37/UBERON_2001037.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001037 * *Label* = sclerotome somite 13 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001137.md b/md/UBERON/37/UBERON_2001137.md index 755f5690b4..5a91048d7a 100644 --- a/md/UBERON/37/UBERON_2001137.md +++ b/md/UBERON/37/UBERON_2001137.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001137 * *Label* = ventral tooth row - * *Definition* = Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001237.md b/md/UBERON/37/UBERON_2001237.md index ae623785cc..638187fb2e 100644 --- a/md/UBERON/37/UBERON_2001237.md +++ b/md/UBERON/37/UBERON_2001237.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001237 * *Label* = ceratobranchial 1 bone - * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001337.md b/md/UBERON/37/UBERON_2001337.md index 32e0d60697..1fe4a89426 100644 --- a/md/UBERON/37/UBERON_2001337.md +++ b/md/UBERON/37/UBERON_2001337.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000020 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_2001437.md b/md/UBERON/37/UBERON_2001437.md index 1b4c0c1dfa..d24981bfd1 100644 --- a/md/UBERON/37/UBERON_2001437.md +++ b/md/UBERON/37/UBERON_2001437.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001437 * *Label* = ductus communicans - * *Definition* = The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001537.md b/md/UBERON/37/UBERON_2001537.md index af5ebb6c5a..0908541fb1 100644 --- a/md/UBERON/37/UBERON_2001537.md +++ b/md/UBERON/37/UBERON_2001537.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001537 * *Label* = mesocoracoid cartilage - * *Definition* = Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * mesocoracoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001537] + * mesocoracoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001537 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001737.md b/md/UBERON/37/UBERON_2001737.md index a2ab41a907..53ae4de5cc 100644 --- a/md/UBERON/37/UBERON_2001737.md +++ b/md/UBERON/37/UBERON_2001737.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001737 * *Label* = coracoid foramen - * *Definition* = Foramen that is located in the coracoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen that is located in the coracoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2001937.md b/md/UBERON/37/UBERON_2001937.md index c51433b406..bb62603ae9 100644 --- a/md/UBERON/37/UBERON_2001937.md +++ b/md/UBERON/37/UBERON_2001937.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001937 * *Label* = anterior nasal barbel - * *Definition* = Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_2002237.md b/md/UBERON/37/UBERON_2002237.md index 8b824c4612..d18db94c6f 100644 --- a/md/UBERON/37/UBERON_2002237.md +++ b/md/UBERON/37/UBERON_2002237.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002237 * *Label* = obsolete pronephric podocyte - * *Definition* = Podocyte that is part of the pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Podocyte that is part of the pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_3000037.md b/md/UBERON/37/UBERON_3000037.md index 434feddc60..6f04fed70e 100644 --- a/md/UBERON/37/UBERON_3000037.md +++ b/md/UBERON/37/UBERON_3000037.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000037 * *Label* = basicranial fenestra - * *Definition* = Ventral opening of the neurocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ventral opening of the neurocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3000237.md b/md/UBERON/37/UBERON_3000237.md index 7d64b63e3b..e90fa54aba 100644 --- a/md/UBERON/37/UBERON_3000237.md +++ b/md/UBERON/37/UBERON_3000237.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000237 * *Label* = infrarostral cartilage - * *Definition* = Larval lower jaw lies anterior to Meckels cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Larval lower jaw lies anterior to Meckels cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms - * infralabial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000237] - * mentomeckelian cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000237] + * infralabial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000237 ] + * mentomeckelian cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000237 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3000437.md b/md/UBERON/37/UBERON_3000437.md index 4c6d50aea1..7870e17bce 100644 --- a/md/UBERON/37/UBERON_3000437.md +++ b/md/UBERON/37/UBERON_3000437.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3000837.md b/md/UBERON/37/UBERON_3000837.md index f1b12c2f97..db853dcf80 100644 --- a/md/UBERON/37/UBERON_3000837.md +++ b/md/UBERON/37/UBERON_3000837.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000837 * *Label* = crista medialis humeri - * *Definition* = Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3000937.md b/md/UBERON/37/UBERON_3000937.md index 777338cef8..f235135b8e 100644 --- a/md/UBERON/37/UBERON_3000937.md +++ b/md/UBERON/37/UBERON_3000937.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000937 * *Label* = prezonal element - * *Definition* = All those parts of the pectoral girdle that lie anterior to the zonal area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = All those parts of the pectoral girdle that lie anterior to the zonal area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3010137.md b/md/UBERON/37/UBERON_3010137.md index 6246c74f36..df8b650efe 100644 --- a/md/UBERON/37/UBERON_3010137.md +++ b/md/UBERON/37/UBERON_3010137.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010137 * *Label* = obsolete trabecular plate - * *Definition* = Ventral plate anterior to and confluent with ethmoid plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Ventral plate anterior to and confluent with ethmoid plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011242 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_3010437.md b/md/UBERON/37/UBERON_3010437.md index d969d48fe5..b36fe3ac30 100644 --- a/md/UBERON/37/UBERON_3010437.md +++ b/md/UBERON/37/UBERON_3010437.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3010637.md b/md/UBERON/37/UBERON_3010637.md index 12a05e094e..e450dfbef8 100644 --- a/md/UBERON/37/UBERON_3010637.md +++ b/md/UBERON/37/UBERON_3010637.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010637 * *Label* = obsolete mucous surface cell - * *Definition* = Type of mucous-producing cell that appears in early larval stages and persists after metamorphosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Type of mucous-producing cell that appears in early larval stages and persists after metamorphosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] * *Comment* = replace with CL_0007019 once cl is released. ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/37/UBERON_3010737.md b/md/UBERON/37/UBERON_3010737.md index d4090f424e..dbe3a5e4d1 100644 --- a/md/UBERON/37/UBERON_3010737.md +++ b/md/UBERON/37/UBERON_3010737.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010737 * *Label* = M. palmaris longus - * *Definition* = Originates from the medial epicondyle of the humerus and inserts on the palmar aponeurosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the medial epicondyle of the humerus and inserts on the palmar aponeurosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_3010837.md b/md/UBERON/37/UBERON_3010837.md index 37412d681e..e58524cfd4 100644 --- a/md/UBERON/37/UBERON_3010837.md +++ b/md/UBERON/37/UBERON_3010837.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010837 * *Label* = Apical Supplementary Element - * *Definition* = A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A muscle slip arising from the lingual surface of the mandible on each side of the m. submentalis. The fibers pass posteromedially and attach upon the median raphe of the principal element (Tyler, 1971). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_4200037.md b/md/UBERON/37/UBERON_4200037.md index d94ea61341..d4cebab624 100644 --- a/md/UBERON/37/UBERON_4200037.md +++ b/md/UBERON/37/UBERON_4200037.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/37/UBERON_4300037.md b/md/UBERON/37/UBERON_4300037.md index c8f6bf3feb..8cb1af828e 100644 --- a/md/UBERON/37/UBERON_4300037.md +++ b/md/UBERON/37/UBERON_4300037.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0000038.md b/md/UBERON/38/UBERON_0000038.md index 390c526437..4c196ff28d 100644 --- a/md/UBERON/38/UBERON_0000038.md +++ b/md/UBERON/38/UBERON_0000038.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000038 * *Label* = follicular fluid - * *Definition* = The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D015571[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_fluid] + * *Definition* = The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D015571, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_fluid ] * *Comment* = Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid. ## Synonyms - * liquor follicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18665] + * liquor follicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18665 ] * liquor folliculi - * ovary follicle fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002511] + * ovary follicle fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002511 ] * antral fluid, ovarian follicle - * liquor folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_fluid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ovarian follicular fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004383] - * ovary follicular fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004383] + * liquor folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_fluid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ovarian follicular fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004383 ] + * ovary follicular fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004383 ] ## Cross-references @@ -24,7 +24,7 @@ * GAID:372 * MA:0002511 * MESH:A05.360.319.114.630.535.150 - * UMLS:C1709369 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Follicle_Fluid] + * UMLS:C1709369 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Follicle_Fluid ] * Wikipedia:Follicular_fluid * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0000438.md b/md/UBERON/38/UBERON_0000438.md index 787ee063a8..ed6c8027cd 100644 --- a/md/UBERON/38/UBERON_0000438.md +++ b/md/UBERON/38/UBERON_0000438.md @@ -6,8 +6,8 @@ ## Synonyms - * Arachnoid trabeculae set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77761] - * trabeculae arachnoideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77761[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Arachnoid trabeculae set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77761 ] + * trabeculae arachnoideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77761, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:77761 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000438 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_0001038.md b/md/UBERON/38/UBERON_0001038.md index 83b31568bf..362764c6b5 100644 --- a/md/UBERON/38/UBERON_0001038.md +++ b/md/UBERON/38/UBERON_0001038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001038 * *Label* = chordotonal organ - * *Definition* = Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0056378[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chordotonal_organ] + * *Definition* = Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0056378, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chordotonal_organ ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001138.md b/md/UBERON/38/UBERON_0001138.md index 39550c0907..75cd156ed0 100644 --- a/md/UBERON/38/UBERON_0001138.md +++ b/md/UBERON/38/UBERON_0001138.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001138 * *Label* = superior mesenteric vein - * *Definition* = In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_vein] + * *Definition* = In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * upper mesenteric vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002783] - * vena mesenterica superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * upper mesenteric vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002783 ] + * vena mesenterica superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002179 * OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA * SCTID:278031001 - * UMLS:C0226742 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Mesenteric_Vein] + * UMLS:C0226742 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Mesenteric_Vein ] * VHOG:0000552 * Wikipedia:Superior_mesenteric_vein * http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001238.md b/md/UBERON/38/UBERON_0001238.md index a24dbc08ad..afdfea095f 100644 --- a/md/UBERON/38/UBERON_0001238.md +++ b/md/UBERON/38/UBERON_0001238.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001238 * *Label* = lamina propria of small intestine - * *Definition* = Lamina propria that is part_of the small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:Obol] + * *Definition* = Lamina propria that is part_of the small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:Obol ] ## Synonyms - * lamina propria mucosa of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria mucosa of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lamina propria mucosae of small intestine * lamina propria of mucosa of small intestine - * lamina propria of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestine lamina propria - * small intestine lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:15651 * MA:0001554 * SCTID:63588008 - * UMLS:C1711325 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Lamina_Propria] + * UMLS:C1711325 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Lamina_Propria ] * ncithesaurus:Small_Intestinal_Lamina_Propria ## Subsets @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001338.md b/md/UBERON/38/UBERON_0001338.md index 719bc606ba..b67ce42fd1 100644 --- a/md/UBERON/38/UBERON_0001338.md +++ b/md/UBERON/38/UBERON_0001338.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001338 * *Label* = urethral gland - * *Definition* = any of the numerous small mucous-secreting glands located in the wall of the male or female urethra that help protect the epithelium from the corrosive urine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * *Definition* = any of the numerous small mucous-secreting glands located in the wall of the male or female urethra that help protect the epithelium from the corrosive urine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Synonyms - * gland of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gland of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urethra gland * urethra gland (male or female) @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001438.md b/md/UBERON/38/UBERON_0001438.md index 55dc123280..33f80acc9a 100644 --- a/md/UBERON/38/UBERON_0001438.md +++ b/md/UBERON/38/UBERON_0001438.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001438 * *Label* = metaphysis - * *Definition* = Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metaphysis] + * *Definition* = Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metaphysis ] * *Comment* = adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of. ## Synonyms * diaphyseal end of long bone * long bone metaphysis - * metaphyses [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * metaphyses [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:24014 * MA:0001363 * SCTID:304581004 - * UMLS:C0222671 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metaphysis] + * UMLS:C0222671 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metaphysis ] * Wikipedia:Metaphysis * ncithesaurus:Metaphysis @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001538.md b/md/UBERON/38/UBERON_0001538.md index 106044b6e6..35f26789bc 100644 --- a/md/UBERON/38/UBERON_0001538.md +++ b/md/UBERON/38/UBERON_0001538.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001538 * *Label* = posterior tibial artery - * *Definition* = The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tibial_artery] + * *Definition* = The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tibial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria tibialis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tibial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria tibialis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tibial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002575 * OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA * SCTID:181358001 - * UMLS:C0086835 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Tibial_Artery] + * UMLS:C0086835 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Tibial_Artery ] * Wikipedia:Posterior_tibial_artery * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001638.md b/md/UBERON/38/UBERON_0001638.md index e26e55220b..2ecbf28a7b 100644 --- a/md/UBERON/38/UBERON_0001638.md +++ b/md/UBERON/38/UBERON_0001638.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001638 * *Label* = vein - * *Definition* = Any of the tubular branching vessels that carry blood from the capillaries toward the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vein] + * *Definition* = Any of the tubular branching vessels that carry blood from the capillaries toward the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vein ] * *Comment* = TODO - check with MA - vein vs venous blood vessel ## Synonyms @@ -11,9 +11,9 @@ * venous tree organ part * venous subtree * venous vessel - * vascular element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:th] - * vena [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * vascular element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:th ] + * vena [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,7 +33,7 @@ * OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA * SCTID:181367001 * TAO:0000082 - * UMLS:C0042449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vein] + * UMLS:C0042449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vein ] * VHOG:0001743 * Wikipedia:Vein * XAO:0000115 @@ -66,8 +66,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_63814 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001738.md b/md/UBERON/38/UBERON_0001738.md index 110c117ba6..3fa74ce302 100644 --- a/md/UBERON/38/UBERON_0001738.md +++ b/md/UBERON/38/UBERON_0001738.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001738 * *Label* = thyroid cartilage - * *Definition* = The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90 in male and 120 in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage] + * *Definition* = The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90 in male and 120 in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage ] ## Synonyms - * cartilago thyroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilago thyroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage] - * laryngeal prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage] - * pomus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage] - * pomus adamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_cartilage] + * cartilago thyroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage ] + * cartilago thyroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * laryngeal prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage ] + * pomus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage ] + * pomus adamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_cartilage ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001764 * MESH:A02.165.507.870 * SCTID:263483000 - * UMLS:C0040126 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Cartilage] + * UMLS:C0040126 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Cartilage ] * VHOG:0001365 * Wikipedia:Thyroid_cartilage * http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = [In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001838.md b/md/UBERON/38/UBERON_0001838.md index 3dd4e7caf0..b40ce39d88 100644 --- a/md/UBERON/38/UBERON_0001838.md +++ b/md/UBERON/38/UBERON_0001838.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001838 * *Label* = sublingual duct - * *Definition* = The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_duct] + * *Definition* = The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_duct ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct of salivary gland](../../UBERON/37/UBERON_0001837.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sublingual gland](../../UBERON/32/UBERON_0001832.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0001938.md b/md/UBERON/38/UBERON_0001938.md index f531356075..781ef8b137 100644 --- a/md/UBERON/38/UBERON_0001938.md +++ b/md/UBERON/38/UBERON_0001938.md @@ -9,13 +9,13 @@ * lateral mammillary hypothalamic nucleus * lateral nucleus of mammillary body - * nucleus mammillaris lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62341[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * LM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1460[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral mamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:413] - * lateral mammillary nucleus (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:413] - * nucleus corporis mamillaris lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:413[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus intercalatus (Olszewski) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:413[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus lateralis corpus mamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:413[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus mammillaris lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62341, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * LM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1460, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral mamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:413 ] + * lateral mammillary nucleus (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:413 ] + * nucleus corporis mamillaris lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:413, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus intercalatus (Olszewski) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:413, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus lateralis corpus mamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:413, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,10 +25,10 @@ * FMA:62341 * MA:0000850 * NIF_GrossAnatomy:birnlex_1460 - * NeuroNames:413 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1460] + * NeuroNames:413 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1460 ] * SCTID:369143007 - * UMLS:C0152357 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1460] - * UMLS:C1289570 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1460] + * UMLS:C0152357 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1460 ] + * UMLS:C1289570 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1460 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002038.md b/md/UBERON/38/UBERON_0002038.md index 3a6c6324ae..c2d2db28fe 100644 --- a/md/UBERON/38/UBERON_0002038.md +++ b/md/UBERON/38/UBERON_0002038.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002038 * *Label* = substantia nigra - * *Definition* = Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_789] + * *Definition* = Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_789 ] * *Comment* = TODO: In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA ## Synonyms * Soemmering's substance * nucleus of basis pedunculi - * SN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_789[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus pigmentosus subthalamo-peduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:536[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substancia nigra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Substantia_nigra] - * substantia nigra (Soemmerringi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:536[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * SN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_789, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus pigmentosus subthalamo-peduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:536, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substancia nigra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Substantia_nigra ] + * substantia nigra (Soemmerringi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:536, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,11 +29,11 @@ * MAT:0000504 * MESH:A08.186.211.132.659.687 * NIF_GrossAnatomy:birnlex_789 - * NeuroNames:536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_789] + * NeuroNames:536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_789 ] * SCTID:279286002 - * UMLS:C0038590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_789] - * UMLS:C0038590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Substantia_Nigra] - * UMLS:C1269578 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_789] + * UMLS:C0038590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_789 ] + * UMLS:C0038590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Substantia_Nigra ] + * UMLS:C1269578 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_789 ] * VHOG:0001573 * Wikipedia:Substantia_nigra * http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the substantia nigra first appears in reptiles and is best developed in primates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002138.md b/md/UBERON/38/UBERON_0002138.md index 00b30d4fa8..5685dc3fbf 100644 --- a/md/UBERON/38/UBERON_0002138.md +++ b/md/UBERON/38/UBERON_0002138.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002138 * *Label* = habenulo-interpeduncular tract - * *Definition* = White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1504] + * *Definition* = White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1504 ] * *Comment* = Taxon notes: present in all fishes and tetrapods[ISBN10:0471888893] ## Synonyms * Meynert's retroflex bundle - * fasciculus retroflexus (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1504] - * fasciculus retroflexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * fasciculus retroflexus (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1504 ] + * fasciculus retroflexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] * habenulointerpeduncular fasciculus * habenulopeduncular tract - * tractus habenulo-interpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000353] - * fasciculus habenulo-interpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus retroflexus (of Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus habenulo-interpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000353 ] + * fasciculus habenulo-interpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus retroflexus (of Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * habenulointerpeduncular tract - * tractus habenulo-intercruralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus habenulointercruralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus habenulointerpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus retroflexus (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus habenulo-intercruralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus habenulointercruralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus habenulointerpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus retroflexus (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,10 +28,10 @@ * BM:HPT * FMA:72400 * NIF_GrossAnatomy:birnlex_1504 - * NeuroNames:2318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1504] + * NeuroNames:2318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1504 ] * SCTID:369194000 * TAO:0000353 - * UMLS:C0228391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1504] + * UMLS:C0228391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1504 ] * ZFA:0000353 ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002238.md b/md/UBERON/38/UBERON_0002238.md index 87656b06df..b90a03a0e0 100644 --- a/md/UBERON/38/UBERON_0002238.md +++ b/md/UBERON/38/UBERON_0002238.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002238 * *Label* = false rib - * *Definition* = A rib that is not directly ventrally connected to the sternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:False_rib] + * *Definition* = A rib that is not directly ventrally connected to the sternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:False_rib ] ## Synonyms * costa spuria - * asternal ribs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:False_ribs] - * costae spuriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:False_ribs[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * asternal ribs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:False_ribs ] + * costae spuriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:False_ribs, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002338.md b/md/UBERON/38/UBERON_0002338.md index 4228822984..bda34c0d11 100644 --- a/md/UBERON/38/UBERON_0002338.md +++ b/md/UBERON/38/UBERON_0002338.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002338 * *Label* = lamina propria of bronchus - * *Definition* = A lamina propria that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchi lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchus lamina propria - * bronchus lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:86619 * MA:0001836 - * UMLS:C1707054 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Lamina_Propria] + * UMLS:C1707054 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Lamina_Propria ] * ncithesaurus:Bronchus_Lamina_Propria ## Subsets @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002438.md b/md/UBERON/38/UBERON_0002438.md index 05cb3814e9..3bf1066013 100644 --- a/md/UBERON/38/UBERON_0002438.md +++ b/md/UBERON/38/UBERON_0002438.md @@ -7,23 +7,23 @@ ## Synonyms - * deep tegmental nucleus of Gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435] - * ventral raphe tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435] - * ventral tegmental nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435] - * ventral tegmental nucleus (gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435] - * ventral tegmental nucleus of gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435] - * VTg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior tegmental nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * anterior tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72435[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=61761[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * ganglion profundum tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:518[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion tegmenti ventrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:518[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of Gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001031] - * nucleus tegmentales anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * nucleus tegmentalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * nucleus tegmenti ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:518[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis tegmenti (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:518[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:518[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rostral tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000275] + * deep tegmental nucleus of Gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435 ] + * ventral raphe tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435 ] + * ventral tegmental nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435 ] + * ventral tegmental nucleus (gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435 ] + * ventral tegmental nucleus of gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435 ] + * VTg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior tegmental nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * anterior tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72435, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=61761, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * ganglion profundum tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:518, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion tegmenti ventrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:518, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of Gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001031 ] + * nucleus tegmentales anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * nucleus tegmentalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * nucleus tegmenti ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:518, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis tegmenti (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:518, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:518, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rostral tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000275 ] ## Cross-references @@ -33,10 +33,10 @@ * FMA:72435 * MA:0001031 * NIF_GrossAnatomy:birnlex_1421 - * NeuroNames:518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1421] + * NeuroNames:518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1421 ] * SCTID:369244006 * TAO:0000275 - * UMLS:C0175394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1421] + * UMLS:C0175394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1421 ] * ZFA:0000275 ## Subsets @@ -50,15 +50,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002538.md b/md/UBERON/38/UBERON_0002538.md index a08638b323..ebeb51c2bb 100644 --- a/md/UBERON/38/UBERON_0002538.md +++ b/md/UBERON/38/UBERON_0002538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002538 * *Label* = hatching gland - * *Definition* = The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002638.md b/md/UBERON/38/UBERON_0002638.md index 0e4ce8f48c..2e6fe8481b 100644 --- a/md/UBERON/38/UBERON_0002638.md +++ b/md/UBERON/38/UBERON_0002638.md @@ -6,10 +6,10 @@ ## Synonyms - * nucleus pulvinaris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1233] - * nucleus pulvinaris medialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1233] - * nucleus pulvinaris thalami, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1233] - * MPul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1233[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * nucleus pulvinaris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1233 ] + * nucleus pulvinaris medialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1233 ] + * nucleus pulvinaris thalami, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1233 ] + * MPul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1233, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -17,8 +17,8 @@ * BM:Die-Th-Pl-Plm * FMA:62182 * NIF_GrossAnatomy:birnlex_1233 - * NeuroNames:331 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1233] - * UMLS:C0228344 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1233] + * NeuroNames:331 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1233 ] + * UMLS:C0228344 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1233 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002738.md b/md/UBERON/38/UBERON_0002738.md index b3bae70f21..79d4ccb5fb 100644 --- a/md/UBERON/38/UBERON_0002738.md +++ b/md/UBERON/38/UBERON_0002738.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002738 * *Label* = isthmus of cingulate gyrus - * *Definition* = Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1541] + * *Definition* = Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1541 ] ## Synonyms - * cingulate gyrus isthmus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62502] - * isthmus of fornicate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62502] - * isthmus of limbic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62502] - * commissure of the inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICG] - * isthmus cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus gyri cingulatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus gyri cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus of Gyrus fornicatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus of cingulate cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1541] - * isthmus of the cingulate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163] - * isthmus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cingulate gyrus isthmus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62502 ] + * isthmus of fornicate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62502 ] + * isthmus of limbic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62502 ] + * commissure of the inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICG ] + * isthmus cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus gyri cingulatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus gyri cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus of Gyrus fornicatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus of cingulate cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1541 ] + * isthmus of the cingulate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163 ] + * isthmus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,8 +25,8 @@ * BAMS:ICgG * FMA:62502 * NIF_GrossAnatomy:birnlex_1541 - * NeuroNames:163 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1541] - * UMLS:C0175192 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1541] + * NeuroNames:163 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1541 ] + * UMLS:C0175192 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1541 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002838.md b/md/UBERON/38/UBERON_0002838.md index bb44fde64b..6407086a26 100644 --- a/md/UBERON/38/UBERON_0002838.md +++ b/md/UBERON/38/UBERON_0002838.md @@ -6,15 +6,15 @@ ## Synonyms - * first cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6010] - * first cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6010] + * first cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6010 ] + * first cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6010 ] ## Cross-references * EMAPA:25144 * FMA:6010 * NIF_GrossAnatomy:birnlex_2603 - * UMLS:C0501468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2603] + * UMLS:C0501468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2603 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0002938.md b/md/UBERON/38/UBERON_0002938.md index e74731763d..826d0b900c 100644 --- a/md/UBERON/38/UBERON_0002938.md +++ b/md/UBERON/38/UBERON_0002938.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002938 * *Label* = parvocellular part of red nucleus - * *Definition* = The parvocellular red nucleus (RNp) is located in the rostral midbrain and is involved in motor coordination. Together with the magnocellular red nucleus, it makes up the red nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Parvocellular_red_nucleus] + * *Definition* = The parvocellular red nucleus (RNp) is located in the rostral midbrain and is involved in motor coordination. Together with the magnocellular red nucleus, it makes up the red nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Parvocellular_red_nucleus ] ## Synonyms - * neoruber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72430] - * red nucleus, parvocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72430] - * RPC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_725[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * neorubrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber, Pars parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars parvocellularis (ruber) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvocellular part of the red nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506] - * red nucleus parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RNpc] - * red nucleus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:506] + * neoruber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72430 ] + * red nucleus, parvocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72430 ] + * RPC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_725, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * neorubrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber, Pars parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars parvocellularis (ruber) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvocellular part of the red nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506 ] + * red nucleus parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RNpc ] + * red nucleus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:506 ] ## Cross-references @@ -24,8 +24,8 @@ * BAMS:RPC * FMA:72430 * NIF_GrossAnatomy:birnlex_725 - * NeuroNames:506 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_725] - * UMLS:C0175401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_725] + * NeuroNames:506 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_725 ] + * UMLS:C0175401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_725 ] * Wikipedia:Parvocellular_red_nucleus ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003038.md b/md/UBERON/38/UBERON_0003038.md index b79ba952b3..5241bbb47c 100644 --- a/md/UBERON/38/UBERON_0003038.md +++ b/md/UBERON/38/UBERON_0003038.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003038 * *Label* = thoracic spinal cord - * *Definition* = The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_spinal_cord] + * *Definition* = The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_spinal_cord ] ## Synonyms - * segmenta thoracica medullae spinalis [1-12] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71167[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thoracic region of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71167] - * thoracic segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71167] - * thoracic segments of spinal cord [1-12] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71167] - * thoracic spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71167] + * segmenta thoracica medullae spinalis [1-12] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71167, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thoracic region of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71167 ] + * thoracic segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71167 ] + * thoracic segments of spinal cord [1-12] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71167 ] + * thoracic spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71167 ] ## Cross-references * FMA:71167 * NIF_GrossAnatomy:birnlex_966 * SCTID:278750009 - * UMLS:C0581620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_966] - * UMLS:C0581620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Spinal_Cord] + * UMLS:C0581620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_966 ] + * UMLS:C0581620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Spinal_Cord ] * Wikipedia:Thoracic_spinal_cord * http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray820.png/200px-Gray820.png * ncithesaurus:Thoracic_Spinal_Cord @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [spinal cord segment](../../UBERON/44/UBERON_0005844.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003138.md b/md/UBERON/38/UBERON_0003138.md index c262b5f06f..c97e774472 100644 --- a/md/UBERON/38/UBERON_0003138.md +++ b/md/UBERON/38/UBERON_0003138.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00000016 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0001013 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003138 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_0003238.md b/md/UBERON/38/UBERON_0003238.md index b5d2b3dc3d..1947c31a19 100644 --- a/md/UBERON/38/UBERON_0003238.md +++ b/md/UBERON/38/UBERON_0003238.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003238 * *Label* = epithelium of superior semicircular canal - * *Definition* = An epithelium that is part of an anterior semicircular canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of an anterior semicircular canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior semicircular canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterior semicircular canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of anterior semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of superior semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of anterior semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior semicircular canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior semicircular canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior semicircular canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterior semicircular canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of anterior semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of superior semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of anterior semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior semicircular canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior semicircular canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior semicircular canal](../../UBERON/41/UBERON_0001841.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003338.md b/md/UBERON/38/UBERON_0003338.md index b9985360b8..6c28e9e234 100644 --- a/md/UBERON/38/UBERON_0003338.md +++ b/md/UBERON/38/UBERON_0003338.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003338 * *Label* = ganglion of peripheral nervous system - * *Definition* = A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2548] + * *Definition* = A spatially aggregated collection of nerve cell bodies in the PNS, consisting of one or more subpopulations that share cell type, chemical phenotype, and connections. (CUMBO). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2548 ] * *Comment* = We follow MA in including separate classes for ganglion and peripheral nervous system, even though for vertebrates gangia are always in the PNS ## Synonyms - * peripheral nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * peripheral nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [peripheral nervous system](../../UBERON/10/UBERON_0000010.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003438.md b/md/UBERON/38/UBERON_0003438.md index 9d42eb8ed1..dee28382d4 100644 --- a/md/UBERON/38/UBERON_0003438.md +++ b/md/UBERON/38/UBERON_0003438.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003438 * *Label* = iris nerve - * *Definition* = A nerve that is part of a iris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a iris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [iris](../../UBERON/69/UBERON_0001769.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003538.md b/md/UBERON/38/UBERON_0003538.md index 18513dd597..86cb01fe1a 100644 --- a/md/UBERON/38/UBERON_0003538.md +++ b/md/UBERON/38/UBERON_0003538.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003538 * *Label* = right lung bronchiole - * *Definition* = A bronchiole that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiole of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiole of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001787 * SCTID:200089000 - * UMLS:C0225670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung_Bronchiole] + * UMLS:C0225670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung_Bronchiole ] * ncithesaurus:Right_Lung_Bronchiole ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003638.md b/md/UBERON/38/UBERON_0003638.md index 960d375be0..235337672f 100644 --- a/md/UBERON/38/UBERON_0003638.md +++ b/md/UBERON/38/UBERON_0003638.md @@ -3,38 +3,38 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003638 * *Label* = manual digit 4 phalanx - * *Definition* = A phalanx that is part of a hand digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a hand digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4 th digit of hand digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th digit of hand long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th digit of hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 4 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 4 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * fourth finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001392] - * long bone of digit of 4 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of 4 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 4 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 4 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35486] - * ring finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35486] - * hand digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * 4 th digit of hand digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th digit of hand long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th digit of hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 4 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 4 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * fourth finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001392 ] + * long bone of digit of 4 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of 4 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 4 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 4 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35486 ] + * ring finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35486 ] + * hand digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -42,7 +42,7 @@ * FMA:35486 * MA:0001392 * SCTID:361787005 - * UMLS:C1708316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_4_Phalanx] + * UMLS:C1708316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_4_Phalanx ] * ncithesaurus:Hand_Digit_4_Phalanx ## Subsets @@ -57,15 +57,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003838.md b/md/UBERON/38/UBERON_0003838.md index 2dea25861e..e7bc340ee9 100644 --- a/md/UBERON/38/UBERON_0003838.md +++ b/md/UBERON/38/UBERON_0003838.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003838 * *Label* = abdominal segment connective tissue - * *Definition* = A portion of connective tissue that is part of an abdominal segment of trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of an abdominal segment of trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdominal segment of trunk connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdominal segment of trunk portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdominal segment of trunk textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of abdominal segment of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdominal segment of trunk connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdominal segment of trunk portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdominal segment of trunk textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of abdominal segment of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0003938.md b/md/UBERON/38/UBERON_0003938.md index 657b20b185..684f4ab596 100644 --- a/md/UBERON/38/UBERON_0003938.md +++ b/md/UBERON/38/UBERON_0003938.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003938 * *Label* = sensory dissociation area - * *Definition* = the area of the parietal lobe that integrates tactile and visual stimuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000796] + * *Definition* = the area of the parietal lobe that integrates tactile and visual stimuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000796 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004038.md b/md/UBERON/38/UBERON_0004038.md index 3324dc42fd..7d33b4b560 100644 --- a/md/UBERON/38/UBERON_0004038.md +++ b/md/UBERON/38/UBERON_0004038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004038 * *Label* = obsolete retinal rod cell inner segment - * *Definition* = the retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008455] + * *Definition* = the retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008455 ] * *Comment* = request from GO as subclass of photoreceptor segment ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004038 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_0004138.md b/md/UBERON/38/UBERON_0004138.md index 7370cddd94..cdea5984e5 100644 --- a/md/UBERON/38/UBERON_0004138.md +++ b/md/UBERON/38/UBERON_0004138.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004138 * *Label* = somitomeric trunk muscle - * *Definition* = The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002075] + * *Definition* = The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002075 ] * *Comment* = TODO - find N+S conditions. SMT & develops_from somite is not specific enough (all SMT develops_from somite) ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004238.md b/md/UBERON/38/UBERON_0004238.md index a1a6cb851e..d46fb0fd5b 100644 --- a/md/UBERON/38/UBERON_0004238.md +++ b/md/UBERON/38/UBERON_0004238.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004238 * *Label* = spleen smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a spleen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a spleen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spleen involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spleen non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spleen smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spleen involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spleen non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spleen smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004338.md b/md/UBERON/38/UBERON_0004338.md index f5b0bbb694..198494a99f 100644 --- a/md/UBERON/38/UBERON_0004338.md +++ b/md/UBERON/38/UBERON_0004338.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004338 * *Label* = proximal phalanx of manual digit 1 - * *Definition* = A proximal phalanx that is part of a hand digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a hand digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first proximal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23918] - * proximal phalanx of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23918] - * proximal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb proximal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * first proximal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23918 ] + * proximal phalanx of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23918 ] + * proximal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb proximal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004438.md b/md/UBERON/38/UBERON_0004438.md index 592024113f..5273da37da 100644 --- a/md/UBERON/38/UBERON_0004438.md +++ b/md/UBERON/38/UBERON_0004438.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004438 * *Label* = proximal epiphysis of middle phalanx of manual digit 4 - * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of middle phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526] - * basal epiphysis of middle phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526] - * base of middle phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526] - * base of middle phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526] - * base of middle phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526] - * proximal epiphysis of middle phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37526[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of middle phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526 ] + * basal epiphysis of middle phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526 ] + * base of middle phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526 ] + * base of middle phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526 ] + * base of middle phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526 ] + * proximal epiphysis of middle phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37526, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of manual digit 4](../../UBERON/22/UBERON_0004322.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004538.md b/md/UBERON/38/UBERON_0004538.md index c7761c0919..dd684b4953 100644 --- a/md/UBERON/38/UBERON_0004538.md +++ b/md/UBERON/38/UBERON_0004538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004538 * *Label* = left kidney - * *Definition* = A kidney that is part of a left side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A kidney that is part of a left side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:7205 * MA:0001655 * SCTID:362209008 - * UMLS:C0227614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Kidney] + * UMLS:C0227614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Kidney ] * ncithesaurus:Left_Kidney ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004638.md b/md/UBERON/38/UBERON_0004638.md index ff76f05acc..2e9c3b972c 100644 --- a/md/UBERON/38/UBERON_0004638.md +++ b/md/UBERON/38/UBERON_0004638.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004638 * *Label* = blood vessel endothelium - * *Definition* = An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -14,7 +14,7 @@ * CALOHA:TS-2155 * MA:0000709 * TAO:0005257 - * UMLS:C1706972 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blood_Vessel_Endothelium] + * UMLS:C1706972 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blood_Vessel_Endothelium ] * ZFA:0005257 * ncithesaurus:Blood_Vessel_Endothelium @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004738.md b/md/UBERON/38/UBERON_0004738.md index bf497823ff..56d86b75ad 100644 --- a/md/UBERON/38/UBERON_0004738.md +++ b/md/UBERON/38/UBERON_0004738.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004738 * *Label* = metanephric juxtaglomerular apparatus - * *Definition* = juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072206] + * *Definition* = juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072206 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [juxtaglomerular apparatus](../../UBERON/03/UBERON_0002303.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0004938.md b/md/UBERON/38/UBERON_0004938.md index fd9abf71b9..7c5e4b7458 100644 --- a/md/UBERON/38/UBERON_0004938.md +++ b/md/UBERON/38/UBERON_0004938.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004938 * *Label* = submucosa of biliary tree - * *Definition* = A submucosa that is part of a biliary tree [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a biliary tree [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * biliary tract submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tree submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of biliary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * biliary tract submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tree submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of biliary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [biliary tree](../../UBERON/73/UBERON_0001173.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005038.md b/md/UBERON/38/UBERON_0005038.md index b32f797651..b76424c835 100644 --- a/md/UBERON/38/UBERON_0005038.md +++ b/md/UBERON/38/UBERON_0005038.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005038 * *Label* = mucosa of segmental bronchus - * *Definition* = A mucosa that is part of a segmental bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a segmental bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of segmental bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of segmental bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of segmental bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * segmental bronchial mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62666] - * segmental bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * segmental bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * segmental bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * segmental bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of segmental bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of segmental bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of segmental bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * segmental bronchial mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62666 ] + * segmental bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * segmental bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * segmental bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * segmental bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005338.md b/md/UBERON/38/UBERON_0005338.md index 5881accde7..c53f5a3e70 100644 --- a/md/UBERON/38/UBERON_0005338.md +++ b/md/UBERON/38/UBERON_0005338.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005338 * *Label* = outflow tract aortic component - * *Definition* = An outflow tract that is part of a aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An outflow tract that is part of a aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract](../../UBERON/45/UBERON_0004145.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005438.md b/md/UBERON/38/UBERON_0005438.md index 1ccc225be8..93ad28d1dd 100644 --- a/md/UBERON/38/UBERON_0005438.md +++ b/md/UBERON/38/UBERON_0005438.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005438 * *Label* = coronary sinus - * *Definition* = The coronary sinus is a collection of veins joined together to form a large vessel that collects blood from the myocardium of the heart. It is present in humans and other animals. The coronary sinus opens into the right atrium, between the inferior vena cava and the auriculo-ventricular opening. It returns the blood from the substance of the heart, and is protected by a semicircular fold of the lining membrane of the auricle, the coronary valve. (valve of Thebesius). The sinus, before entering the auricle, is considerably dilated - nearly to the size of the end of the little finger. Its wall is partly muscular, and at its junction with the great coronary vein is somewhat constricted and furnished with a valve consisting of two unequal segments. - Gray 462 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_sinus] + * *Definition* = The coronary sinus is a collection of veins joined together to form a large vessel that collects blood from the myocardium of the heart. It is present in humans and other animals. The coronary sinus opens into the right atrium, between the inferior vena cava and the auriculo-ventricular opening. It returns the blood from the substance of the heart, and is protected by a semicircular fold of the lining membrane of the auricle, the coronary valve. (valve of Thebesius). The sinus, before entering the auricle, is considerably dilated - nearly to the size of the end of the little finger. Its wall is partly muscular, and at its junction with the great coronary vein is somewhat constricted and furnished with a valve consisting of two unequal segments. - Gray 462 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_sinus ] ## Synonyms * sinus coronarius - * sinus coronarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus coronarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * EHDAA:9884 * FMA:4706 * SCTID:244386006 - * UMLS:C0456944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coronary_Sinus] + * UMLS:C0456944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coronary_Sinus ] * Wikipedia:Coronary_sinus * http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png * ncithesaurus:Coronary_Sinus @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005638.md b/md/UBERON/38/UBERON_0005638.md index 0dff900a42..d35deba4b6 100644 --- a/md/UBERON/38/UBERON_0005638.md +++ b/md/UBERON/38/UBERON_0005638.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005638 * *Label* = anterior chamber epithelium - * *Definition* = An epithelium that is part of a anterior chamber of eyeball. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a anterior chamber of eyeball. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior chamber of eyeball](../../UBERON/66/UBERON_0001766.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005738.md b/md/UBERON/38/UBERON_0005738.md index 1f3f6c5d4f..b7318b4b68 100644 --- a/md/UBERON/38/UBERON_0005738.md +++ b/md/UBERON/38/UBERON_0005738.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005738 * *Label* = swim bladder tunica interna - * *Definition* = Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http:www.briancoad.com/Dictionary/T.htm] + * *Definition* = Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http:www.briancoad.com/Dictionary/T.htm ] * *Comment* = the primary reason this term is manifest in uberon to disambiguate from a structure with the same/similar name ## Synonyms - * tunica interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001701] + * tunica interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001701 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0005838.md b/md/UBERON/38/UBERON_0005838.md index 5a94e25830..bdd5a51c78 100644 --- a/md/UBERON/38/UBERON_0005838.md +++ b/md/UBERON/38/UBERON_0005838.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005838 * *Label* = fasciculus of brain - * *Definition* = A fascicle that is part of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fascicle that is part of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brain fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83844] + * brain fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83844 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve fasciculus](../../UBERON/19/UBERON_0001019.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006038.md b/md/UBERON/38/UBERON_0006038.md index 54f94d2e1d..c6e0126531 100644 --- a/md/UBERON/38/UBERON_0006038.md +++ b/md/UBERON/38/UBERON_0006038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006038 * *Label* = interdigital region between pedal digits 1 and 2 - * *Definition* = An interdigital region that adjacent_to a pedal digit 1 and adjacent_to a pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a pedal digit 1 and adjacent_to a pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006138.md b/md/UBERON/38/UBERON_0006138.md index 691512cd91..7966ea2801 100644 --- a/md/UBERON/38/UBERON_0006138.md +++ b/md/UBERON/38/UBERON_0006138.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006238.md b/md/UBERON/38/UBERON_0006238.md index 552d01f905..a8dd4b3412 100644 --- a/md/UBERON/38/UBERON_0006238.md +++ b/md/UBERON/38/UBERON_0006238.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006238 * *Label* = future brain - * *Definition* = The embryonic precursor of the brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_94995] + * *Definition* = The embryonic precursor of the brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_94995 ] * *Comment* = Usage notes: this class is restricted to neural-tube derived brains ## Synonyms - * brain rudiment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000146] - * presumptive brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000146] - * encephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_94995] + * brain rudiment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000146 ] + * presumptive brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000146 ] + * encephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_94995 ] ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The embryonic precursor of the brain and the set of mature brain structures that derive from it (CUMBO) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006338.md b/md/UBERON/38/UBERON_0006338.md index c7393ae5a5..2cdc08edca 100644 --- a/md/UBERON/38/UBERON_0006338.md +++ b/md/UBERON/38/UBERON_0006338.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006338 * *Label* = lateral ventricle choroid plexus stroma - * *Definition* = A choroid plexus stroma that is part of a lateral ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus stroma that is part of a lateral ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = editors note: definitions should be fixed to use generic stroma class ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus stroma](../../UBERON/06/UBERON_0005206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006438.md b/md/UBERON/38/UBERON_0006438.md index 073ca7bf7a..fd692bb79c 100644 --- a/md/UBERON/38/UBERON_0006438.md +++ b/md/UBERON/38/UBERON_0006438.md @@ -6,8 +6,8 @@ ## Synonyms - * 5th lumbar intersegmental artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16812] - * axial artery of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16812] + * 5th lumbar intersegmental artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16812 ] + * axial artery of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16812 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006538.md b/md/UBERON/38/UBERON_0006538.md index 208826fdde..345b0ee75c 100644 --- a/md/UBERON/38/UBERON_0006538.md +++ b/md/UBERON/38/UBERON_0006538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006538 * *Label* = respiratory system fluid/secretion - * *Definition* = A portion of organism substance that secreted_by a respiratory system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of organism substance that secreted_by a respiratory system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references * MA:0002533 - * UMLS:C1514899 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_System_Fluid_or_Secretion] + * UMLS:C1514899 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_System_Fluid_or_Secretion ] * ncithesaurus:Respiratory_System_Fluid_or_Secretion ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006638.md b/md/UBERON/38/UBERON_0006638.md index e5e92408ca..f2a10e8d34 100644 --- a/md/UBERON/38/UBERON_0006638.md +++ b/md/UBERON/38/UBERON_0006638.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006638 * *Label* = remnant of urachus - * *Definition* = The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_umbilical_ligament] + * *Definition* = The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_umbilical_ligament ] ## Synonyms - * median umbilical ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16568] - * ligamentum umbilicale medianum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_umbilical_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * median umbilical fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_umbilical_ligament] - * middle umbilical ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_umbilical_ligament] + * median umbilical ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16568 ] + * ligamentum umbilicale medianum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_umbilical_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * median umbilical fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_umbilical_ligament ] + * middle umbilical ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_umbilical_ligament ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006838.md b/md/UBERON/38/UBERON_0006838.md index d50baf3eb5..70140a1971 100644 --- a/md/UBERON/38/UBERON_0006838.md +++ b/md/UBERON/38/UBERON_0006838.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006838 * *Label* = anterior ramus of spinal nerve - * *Definition* = The ventral ramus (anterior ramus, anterior branch, anterior divisions of the spinal nerves) supply the antero-lateral parts of the trunk, and the limbs; they are for the most part larger than the posterior divisions. In the thoracic region they remain distinct from each other and each innervates a narrow strip of muscle and skin along the sides, chest, ribs, and abdominal wall. These rami are called the intercostal nerves. In regions other than the thoracic, ventral rami converge with each other to form networks of nerves called nerve plexuses. Within each plexus, fibers from the various ventral rami branch and become redistributed so that each nerve exiting the plexus has fibers from several different spinal nerves. One advantage to having plexuses is that damage to a single spinal nerve will not completely paralyze a limb. There are four main plexuses formed by the ventral rami: The cervical plexus contains ventral rami from spinal nerves C1-C5. Branches of the cervical plexus, which include the phrenic nerve, innervate muscles of the neck, the diaphragm, and the skin of the neck and upper chest. The brachial plexus contains ventral rami from spinal nerves C5-T1. This plexus innervates the pectoral girdle and upper limb. The lumbar plexus contains ventral rami from spinal nerves L1-L4. The sacral plexus contains ventral rami from spinal nerves L4-S4. The lumbar and sacral plexuses innervate the pelvic girdle and lower limbs. The Ventral rami, including the sinuvertebral nerve branches, supply structures anterior to the facet joint, including the vertebral bodies, the discs and their ligaments and joints other spinal nerves to form the lumbo-sacral plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ramus_of_spinal_nerve] + * *Definition* = The ventral ramus (anterior ramus, anterior branch, anterior divisions of the spinal nerves) supply the antero-lateral parts of the trunk, and the limbs; they are for the most part larger than the posterior divisions. In the thoracic region they remain distinct from each other and each innervates a narrow strip of muscle and skin along the sides, chest, ribs, and abdominal wall. These rami are called the intercostal nerves. In regions other than the thoracic, ventral rami converge with each other to form networks of nerves called nerve plexuses. Within each plexus, fibers from the various ventral rami branch and become redistributed so that each nerve exiting the plexus has fibers from several different spinal nerves. One advantage to having plexuses is that damage to a single spinal nerve will not completely paralyze a limb. There are four main plexuses formed by the ventral rami: The cervical plexus contains ventral rami from spinal nerves C1-C5. Branches of the cervical plexus, which include the phrenic nerve, innervate muscles of the neck, the diaphragm, and the skin of the neck and upper chest. The brachial plexus contains ventral rami from spinal nerves C5-T1. This plexus innervates the pectoral girdle and upper limb. The lumbar plexus contains ventral rami from spinal nerves L1-L4. The sacral plexus contains ventral rami from spinal nerves L4-S4. The lumbar and sacral plexuses innervate the pelvic girdle and lower limbs. The Ventral rami, including the sinuvertebral nerve branches, supply structures anterior to the facet joint, including the vertebral bodies, the discs and their ligaments and joints other spinal nerves to form the lumbo-sacral plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ramus_of_spinal_nerve ] ## Synonyms - * anterior primary ramus of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5982] - * ventral ramus of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5982] - * ramus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5982] - * ramus anterior nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ramus_of_spinal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior primary ramus of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5982 ] + * ventral ramus of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5982 ] + * ramus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5982 ] + * ramus anterior nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ramus_of_spinal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0006938.md b/md/UBERON/38/UBERON_0006938.md index 7f0d773135..acda1702e0 100644 --- a/md/UBERON/38/UBERON_0006938.md +++ b/md/UBERON/38/UBERON_0006938.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006938 * *Label* = pinna surface epithelium - * *Definition* = An epithelium that is part of a pinna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pinna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pinna](../../UBERON/57/UBERON_0001757.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0007238.md b/md/UBERON/38/UBERON_0007238.md index 7a4881c04c..0c079fb638 100644 --- a/md/UBERON/38/UBERON_0007238.md +++ b/md/UBERON/38/UBERON_0007238.md @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0007738.md b/md/UBERON/38/UBERON_0007738.md index df39309f6a..eb197d92a4 100644 --- a/md/UBERON/38/UBERON_0007738.md +++ b/md/UBERON/38/UBERON_0007738.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007738 * *Label* = metacarpophalangeal joint of manual digit 2 - * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpophalangeal joint of digit 2 - * metacarpophalangeal joint of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35252] - * metacarpophalangeal joint of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35252] - * metacarpo-phalangeal joint of digit 2 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25060] - * metacarpophalangeal joint of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35252[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpophalangeal joint of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35252 ] + * metacarpophalangeal joint of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35252 ] + * metacarpo-phalangeal joint of digit 2 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25060 ] + * metacarpophalangeal joint of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35252, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manual digit 2](../../UBERON/28/UBERON_0004328.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0007838.md b/md/UBERON/38/UBERON_0007838.md index 3c8acdd302..89839acf67 100644 --- a/md/UBERON/38/UBERON_0007838.md +++ b/md/UBERON/38/UBERON_0007838.md @@ -6,7 +6,7 @@ ## Synonyms - * white commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77033] + * white commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77033 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0008338.md b/md/UBERON/38/UBERON_0008338.md index 82144683bd..0b5b81eb6d 100644 --- a/md/UBERON/38/UBERON_0008338.md +++ b/md/UBERON/38/UBERON_0008338.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008338 * *Label* = plantar part of pes - * *Definition* = The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29] + * *Definition* = The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29 ] ## Synonyms - * planta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plantar part of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25000] - * plantar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25000] - * regio plantaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25000] - * sole of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25000] - * pelma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29] - * planta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sole of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29] - * sole of the foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29] - * soles of the feet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sole_%28foot%29] + * planta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plantar part of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25000 ] + * plantar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25000 ] + * regio plantaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25000 ] + * sole of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25000 ] + * pelma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29 ] + * planta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sole of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29 ] + * sole of the foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29 ] + * soles of the feet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sole_%28foot%29 ] ## Cross-references * BTO:0005078 * FMA:25000 * SCTID:57999000 - * UMLS:C0230463 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Plantar_Region] + * UMLS:C0230463 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Plantar_Region ] * Wikipedia:Sole_%28foot%29 * galen:SoleOfFoot * http://upload.wikimedia.org/wikipedia/commons/4/41/Soles2.jpg @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0008438.md b/md/UBERON/38/UBERON_0008438.md index 9969b3e58b..099da0a696 100644 --- a/md/UBERON/38/UBERON_0008438.md +++ b/md/UBERON/38/UBERON_0008438.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008438 * *Label* = webbed interdigital region between manual digits - * *Definition* = A webbed interdigital region that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A webbed interdigital region that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [webbed interdigital region](../../UBERON/15/UBERON_0006015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0008538.md b/md/UBERON/38/UBERON_0008538.md index 0b40f94a07..a465fbf655 100644 --- a/md/UBERON/38/UBERON_0008538.md +++ b/md/UBERON/38/UBERON_0008538.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008538 * *Label* = muscle of posterior compartment of thigh - * *Definition* = The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_compartment_of_thigh] + * *Definition* = The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_compartment_of_thigh ] ## Synonyms - * posterior femoral muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22427] - * compartimentum femoris posterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_compartment_of_thigh[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior fascial compartment of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_compartment_of_thigh] - * posterior femoral muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_compartment_of_thigh] + * posterior femoral muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22427 ] + * compartimentum femoris posterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_compartment_of_thigh, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior fascial compartment of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_compartment_of_thigh ] + * posterior femoral muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_compartment_of_thigh ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0008838.md b/md/UBERON/38/UBERON_0008838.md index 29eb76bfa5..267528ef16 100644 --- a/md/UBERON/38/UBERON_0008838.md +++ b/md/UBERON/38/UBERON_0008838.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008838 * *Label* = metapodial pad - * *Definition* = A thick, spongy layer of tissue located under the metacarpal and metatarsal joints of the autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Footpad] + * *Definition* = A thick, spongy layer of tissue located under the metacarpal and metatarsal joints of the autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Footpad ] * *Comment* = Editor notes: check synonyms - re footpad ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod pad](../../UBERON/48/UBERON_0012348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metapodium region](../../UBERON/77/UBERON_0009877.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0009038.md b/md/UBERON/38/UBERON_0009038.md index bea5405784..d424609bd2 100644 --- a/md/UBERON/38/UBERON_0009038.md +++ b/md/UBERON/38/UBERON_0009038.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009038 * *Label* = sulcus ampullaris - * *Definition* = the groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove] + * *Definition* = the groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove ] ## Synonyms - * ampullary groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74584] + * ampullary groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74584 ] * ampullary sulcus ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0009138.md b/md/UBERON/38/UBERON_0009138.md index f2d6db8897..a5e6e43a5b 100644 --- a/md/UBERON/38/UBERON_0009138.md +++ b/md/UBERON/38/UBERON_0009138.md @@ -7,7 +7,7 @@ ## Synonyms - * common cardinal vein right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004535] + * common cardinal vein right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004535 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0009538.md b/md/UBERON/38/UBERON_0009538.md index 2965c78dbe..64814e7b2d 100644 --- a/md/UBERON/38/UBERON_0009538.md +++ b/md/UBERON/38/UBERON_0009538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009538 * *Label* = mesenchyme of sublingual gland primordium - * *Definition* = Mesenchyme that is part of a sublingual gland primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a sublingual gland primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sublingual gland primordium](../../UBERON/97/UBERON_0006297.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0009638.md b/md/UBERON/38/UBERON_0009638.md index 520f5d7eb3..a2032b0d38 100644 --- a/md/UBERON/38/UBERON_0009638.md +++ b/md/UBERON/38/UBERON_0009638.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0009738.md b/md/UBERON/38/UBERON_0009738.md index 1f8b4c8f89..18a23f7ca4 100644 --- a/md/UBERON/38/UBERON_0009738.md +++ b/md/UBERON/38/UBERON_0009738.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009738 * *Label* = border of sublaminar layers S1 and S2 - * *Definition* = The region extending out from the boundary between layers S1 and S2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The region extending out from the boundary between layers S1 and S2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -19,20 +19,21 @@ * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) * [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layers S1 or S2](../../UBERON/27/UBERON_0008927.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S1](../../UBERON/22/UBERON_0008922.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010038.md b/md/UBERON/38/UBERON_0010038.md index 4b204d1a4a..4c5c704881 100644 --- a/md/UBERON/38/UBERON_0010038.md +++ b/md/UBERON/38/UBERON_0010038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010038 * *Label* = fundic gastric gland - * *Definition* = The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundic_glands] + * *Definition* = The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundic_glands ] * *Comment* = Editor notes: Consider FMA:14923 ## Synonyms @@ -13,14 +13,14 @@ * gastric fundal gland * gastric fundus gland * gastric gland of fundus of stomach - * glandulae gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundic_glands[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandulae gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundic_glands, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:27161 * EMAPA:27427 * SCTID:268338004 - * UMLS:C0017130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fundic_Gland] + * UMLS:C0017130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fundic_Gland ] * Wikipedia:Fundic_glands * http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg * ncithesaurus:Fundic_Gland @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gastric gland](../../UBERON/25/UBERON_0000325.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fundus of stomach](../../UBERON/60/UBERON_0001160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010238.md b/md/UBERON/38/UBERON_0010238.md index f43ced4fe6..21a3fac844 100644 --- a/md/UBERON/38/UBERON_0010238.md +++ b/md/UBERON/38/UBERON_0010238.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010238 * *Label* = torus pylorus - * *Definition* = A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/torus+pyloricus] + * *Definition* = A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/torus+pyloricus ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010338.md b/md/UBERON/38/UBERON_0010338.md index e2832841eb..96022dc371 100644 --- a/md/UBERON/38/UBERON_0010338.md +++ b/md/UBERON/38/UBERON_0010338.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010338 * *Label* = 1st arch maxillary mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch maxillary mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch maxillary mesenchyme](../../UBERON/45/UBERON_0010045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010338 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010538.md b/md/UBERON/38/UBERON_0010538.md index 2dfbc1e403..6e0c56744d 100644 --- a/md/UBERON/38/UBERON_0010538.md +++ b/md/UBERON/38/UBERON_0010538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010538 * *Label* = paired limb/fin segment - * *Definition* = An appendage segment that is part of a limb/fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An appendage segment that is part of a limb/fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [paired limb/fin](../../UBERON/08/UBERON_0004708.md) and [subdivision of organism along appendicular axis](../../UBERON/58/UBERON_0010758.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010738.md b/md/UBERON/38/UBERON_0010738.md index cae38c557e..f2b61c0a09 100644 --- a/md/UBERON/38/UBERON_0010738.md +++ b/md/UBERON/38/UBERON_0010738.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010738 * *Label* = distal tarsal bone 5 - * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005056] + * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005056 ] * *Comment* = We need to restrict the logical definition such that it is *only* connecting to metatarsal 5 ## Synonyms - * distal tarsal 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005056] - * tarsal 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000933] - * cuboideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005056] + * distal tarsal 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005056 ] + * tarsal 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000933 ] + * cuboideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005056 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone 5 endochondral element](../../UBERON/14/UBERON_0015114.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0010938.md b/md/UBERON/38/UBERON_0010938.md index 961ba2f34f..cb0d71267f 100644 --- a/md/UBERON/38/UBERON_0010938.md +++ b/md/UBERON/38/UBERON_0010938.md @@ -7,8 +7,8 @@ ## Synonyms * belly of muscle - * belly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9719] - * venter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * belly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9719 ] + * venter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0011138.md b/md/UBERON/38/UBERON_0011138.md index 2dcd6a6f2a..3c00e10c00 100644 --- a/md/UBERON/38/UBERON_0011138.md +++ b/md/UBERON/38/UBERON_0011138.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011138 * *Label* = post-cranial axial skeletal system - * *Definition* = Subdivision of the skeletal system which consists of the post-cranial axial skeleton plus associated joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of the skeletal system which consists of the post-cranial axial skeleton plus associated joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * axial skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/references/reference_0000008] + * axial skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/references/reference_0000008 ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011138 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000003 +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_0011238.md b/md/UBERON/38/UBERON_0011238.md index 8709a40efc..c1e52822b9 100644 --- a/md/UBERON/38/UBERON_0011238.md +++ b/md/UBERON/38/UBERON_0011238.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011238 * *Label* = mesethmoid bone - * *Definition* = Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000323] + * *Definition* = Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000323 ] * *Comment* = absent in primitive mammals, ungulates, amphibians, reptiles/birds[Kardong] ## Synonyms - * dermethmocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000323] - * msethmocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000323] - * ethmoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000323] + * dermethmocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000323 ] + * msethmocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000323 ] + * ethmoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000323 ] ## Cross-references @@ -27,7 +27,7 @@ * [neurocranium bone](../../UBERON/64/UBERON_0011164.md) * [part_of](../../BFO/50/BFO_0000050.md) some [chondrocranium](../../UBERON/41/UBERON_0002241.md) * [part_of](../../BFO/50/BFO_0000050.md) some [ethmoid region](../../UBERON/41/UBERON_0011241.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) * [develops from](../../RO/02/RO_0002202.md) some [neurocranial trabecula](../../UBERON/45/UBERON_0005945.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0011638.md b/md/UBERON/38/UBERON_0011638.md index 645aa81dbf..1baa15f024 100644 --- a/md/UBERON/38/UBERON_0011638.md +++ b/md/UBERON/38/UBERON_0011638.md @@ -29,8 +29,9 @@ ## Other Annotations * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 8 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0011738.md b/md/UBERON/38/UBERON_0011738.md index 73eebce36f..a510abd738 100644 --- a/md/UBERON/38/UBERON_0011738.md +++ b/md/UBERON/38/UBERON_0011738.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011738 * *Label* = quadrate lobe hepatic sinusoids - * *Definition* = A hepatic sinusoid that is part of a quadrate lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic sinusoid that is part of a quadrate lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * liver right quadrate lobe hepatic sinusoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001013] + * liver right quadrate lobe hepatic sinusoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001013 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic sinusoid](../../UBERON/81/UBERON_0001281.md) and [part_of](../../BFO/50/BFO_0000050.md) some [quadrate lobe of liver](../../UBERON/16/UBERON_0001116.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0011938.md b/md/UBERON/38/UBERON_0011938.md index 92f5b59107..5a7e7836c4 100644 --- a/md/UBERON/38/UBERON_0011938.md +++ b/md/UBERON/38/UBERON_0011938.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011938 * *Label* = vibrissa inner root sheath - * *Definition* = A hair inner root sheath that is part of a vibrissa unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hair inner root sheath that is part of a vibrissa unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hair inner root sheath](../../UBERON/41/UBERON_0005941.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa unit](../../UBERON/33/UBERON_0011933.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011938 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0012138.md b/md/UBERON/38/UBERON_0012138.md index ec3aedc4aa..f387454926 100644 --- a/md/UBERON/38/UBERON_0012138.md +++ b/md/UBERON/38/UBERON_0012138.md @@ -6,14 +6,14 @@ ## Synonyms - * digitus octus pedis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * digitus octus pedis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * eigth toe * hind digit 8 * hind digit VIII - * hind limb digit 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit VIII * toe 8 - * foot digit 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 8 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0012238.md b/md/UBERON/38/UBERON_0012238.md index 43292c5852..812c4cb3e1 100644 --- a/md/UBERON/38/UBERON_0012238.md +++ b/md/UBERON/38/UBERON_0012238.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012238 * *Label* = ureteric bud trunk - * *Definition* = ureteric bud cells that elongate to form a rigid structure (stalk) consisting of polarized epithelial cells without branching; the stalks differentiate into the collecting system of the mature kidney, while the tip cells interact with the adjacent cells of the metanephric mesenchyme, inducing their conversion into nephrons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011761] + * *Definition* = ureteric bud cells that elongate to form a rigid structure (stalk) consisting of polarized epithelial cells without branching; the stalks differentiate into the collecting system of the mature kidney, while the tip cells interact with the adjacent cells of the metanephric mesenchyme, inducing their conversion into nephrons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011761 ] ## Synonyms - * ureteric bud stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011761] - * ureteric stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:27608] - * ureteric trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:27608] + * ureteric bud stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011761 ] + * ureteric stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:27608 ] + * ureteric trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:27608 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0012438.md b/md/UBERON/38/UBERON_0012438.md index d640c004be..3483ffbbad 100644 --- a/md/UBERON/38/UBERON_0012438.md +++ b/md/UBERON/38/UBERON_0012438.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blastema](../../UBERON/06/UBERON_0005306.md) and [part_of](../../BFO/50/BFO_0000050.md) some [regenerating fin/limb](../../UBERON/69/UBERON_2001269.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0013138.md b/md/UBERON/38/UBERON_0013138.md index 5c212d7cd5..9df854afdf 100644 --- a/md/UBERON/38/UBERON_0013138.md +++ b/md/UBERON/38/UBERON_0013138.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013138 * *Label* = coronary ligament of liver - * *Definition* = The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_ligament] + * *Definition* = The coronary ligament of the liver refers to parts of the peritoneal reflections that hold the liver to the inferior surface of the diaphragm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_ligament ] ## Synonyms - * coronary ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15822] - * ligamentum coronarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15822] - * ligamentum coronarium hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ligamentum coronaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_ligament] + * coronary ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15822 ] + * ligamentum coronarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15822 ] + * ligamentum coronarium hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ligamentum coronaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_ligament ] ## Cross-references * FMA:15822 * SCTID:279967000 - * UMLS:C1261099 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coronary_Ligament] + * UMLS:C1261099 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coronary_Ligament ] * Wikipedia:Coronary_ligament * ncithesaurus:Coronary_Ligament @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013138 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0013238.md b/md/UBERON/38/UBERON_0013238.md index 5bf26186ab..c7f761c3ba 100644 --- a/md/UBERON/38/UBERON_0013238.md +++ b/md/UBERON/38/UBERON_0013238.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013238 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0013538.md b/md/UBERON/38/UBERON_0013538.md index 4f3c1b712c..e79cbba468 100644 --- a/md/UBERON/38/UBERON_0013538.md +++ b/md/UBERON/38/UBERON_0013538.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013538 * *Label* = Brodmann (1909) area 7 - * *Definition* = Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_7] + * *Definition* = Brodmann area 7 is one of Brodmann's cytologically defined regions of the brain. It is involved in locating objects in space. It serves as a point of convergence between vision and proprioception to determine where objects are in relation to parts of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_7 ] ## Synonyms - * B09-7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1738] - * Brodmann (1909) area 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1738] - * Brodmann area 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68604] - * Brodmann area 7, superior parietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1738] - * area 7 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68604] - * area 7 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1738] - * area parietalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1738] - * area parietalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_7[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1738[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * gyrus F3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio subfrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1738 ] + * Brodmann (1909) area 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1738 ] + * Brodmann area 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68604 ] + * Brodmann area 7, superior parietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1738 ] + * area 7 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68604 ] + * area 7 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1738 ] + * area parietalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1738 ] + * area parietalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_7, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1738, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * gyrus F3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio subfrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:68604 * NIF_GrossAnatomy:birnlex_1738 - * NeuroNames:85 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1738] - * UMLS:C1272529 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1738] + * NeuroNames:85 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1738 ] + * UMLS:C1272529 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1738 ] * Wikipedia:Brodmann_area_7 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0013638.md b/md/UBERON/38/UBERON_0013638.md index 6a612848bb..0f9cc9bfcd 100644 --- a/md/UBERON/38/UBERON_0013638.md +++ b/md/UBERON/38/UBERON_0013638.md @@ -8,7 +8,7 @@ ## Synonyms * horny papilla - * horny papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * horny papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0013738.md b/md/UBERON/38/UBERON_0013738.md index 14fdc33364..2d7dcb145d 100644 --- a/md/UBERON/38/UBERON_0013738.md +++ b/md/UBERON/38/UBERON_0013738.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013738 * *Label* = parabrachial pigmental nucleus - * *Definition* = Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144307] + * *Definition* = Nucleus identified in the medial ventral tegmental area that borders the red nucleus and superior cerebellar peduncle dorsally, the medial lemniscus laterally, the subtantia nigra pars compacta and paranigral nucleus ventrally and the rostral linear nucleus and interfascicular nucleus medially. Generally, the largest nucleus in the ventral tegmental area, occupying an average of 50% of the total volume as measured in rat, cat, monkey and human. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144307 ] ## Synonyms - * parabrachial pigmented nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144307] - * PBP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21653852[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * parabrachial pigmented nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144307 ] + * PBP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21653852, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0014438.md b/md/UBERON/38/UBERON_0014438.md index 8a29b94d4f..3934efda17 100644 --- a/md/UBERON/38/UBERON_0014438.md +++ b/md/UBERON/38/UBERON_0014438.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014438 * *Label* = superior pubic ramus - * *Definition* = The superior pubic ramus is a part of the pubic bone which forms a portion of the obturator foramen. It extends from the body to the median plane where it articulates with its fellow of the opposite side. It is conveniently described in two portions, viz. , a medial flattened part and a narrow lateral prismoid portion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pubic_ramus] + * *Definition* = The superior pubic ramus is a part of the pubic bone which forms a portion of the obturator foramen. It extends from the body to the median plane where it articulates with its fellow of the opposite side. It is conveniently described in two portions, viz. , a medial flattened part and a narrow lateral prismoid portion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pubic_ramus ] ## Synonyms - * superior ramus of pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16988] - * superior rami of the pubes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pubic_ramus] - * superior ramus of the pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pubic_ramus] + * superior ramus of pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16988 ] + * superior rami of the pubes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pubic_ramus ] + * superior ramus of the pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pubic_ramus ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014438 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0014538.md b/md/UBERON/38/UBERON_0014538.md index 769156310c..7df4b113ac 100644 --- a/md/UBERON/38/UBERON_0014538.md +++ b/md/UBERON/38/UBERON_0014538.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014538 * *Label* = subdivision of spinal cord central canal - * *Definition* = A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A subdivision of the central canal of the spinal cord along its anterior-posterior axis. This is typically subdivided into cervical, thoracic, lumbar and sacral segments [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * regional part of spinal cord central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_717[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * regional part of spinal cord central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_717, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014538 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0014638.md b/md/UBERON/38/UBERON_0014638.md index 7b8b8d1c1e..9b536139d0 100644 --- a/md/UBERON/38/UBERON_0014638.md +++ b/md/UBERON/38/UBERON_0014638.md @@ -6,13 +6,13 @@ ## Synonyms - * lumbar spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_884[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * lumbar spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_884] + * lumbar spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_884, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * lumbar spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_884 ] ## Cross-references * NIF_GrossAnatomy:birnlex_884 - * UMLS:C1282146 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_884] + * UMLS:C1282146 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_884 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal horn of spinal cord](../../UBERON/56/UBERON_0002256.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lumbar spinal cord](../../UBERON/92/UBERON_0002792.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014638 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0014738.md b/md/UBERON/38/UBERON_0014738.md index 02ffabf3a3..6edc0da9a1 100644 --- a/md/UBERON/38/UBERON_0014738.md +++ b/md/UBERON/38/UBERON_0014738.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014738 * *Label* = medial pallium - * *Definition* = Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Subdivision of pallium that is located is the medial position in vertebrates with an evaginated brain and in the distal position in vertebrates with an everted brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms * medial zone of dorsal telencephalic area * medial zone of dorsal telencephalon - * MP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * MP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * area dorsalis telencephali, zona medialis - * distal pallium (everted brain) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * hippocampal pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * lateral pallium (everted brain) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * distal pallium (everted brain) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * hippocampal pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * lateral pallium (everted brain) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014738 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0014838.md b/md/UBERON/38/UBERON_0014838.md index e3d36a159f..4d7d4f28eb 100644 --- a/md/UBERON/38/UBERON_0014838.md +++ b/md/UBERON/38/UBERON_0014838.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014838 * *Label* = xiphihumeralis - * *Definition* = The most deep of pectoral muscles, found in some mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = The most deep of pectoral muscles, found in some mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014838 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_0015038.md b/md/UBERON/38/UBERON_0015038.md index 931e6035b8..817184f5da 100644 --- a/md/UBERON/38/UBERON_0015038.md +++ b/md/UBERON/38/UBERON_0015038.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015038 * *Label* = pedal digit 2 metatarsal endochondral element - * *Definition* = A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 2 metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 2 metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 2 metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 2 metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [metatarsal bone of digit 2](../../UBERON/51/UBERON_0003651.md)or[pedal digit 2 metatarsal cartilage element](../../UBERON/58/UBERON_0010558.md)or[pedal digit 2 metatarsal pre-cartilage condensation](../../UBERON/48/UBERON_0010548.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015038 + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2000238.md b/md/UBERON/38/UBERON_2000238.md index 05d1c5f439..340eadb55a 100644 --- a/md/UBERON/38/UBERON_2000238.md +++ b/md/UBERON/38/UBERON_2000238.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2000438.md b/md/UBERON/38/UBERON_2000438.md index 05b89d0c52..fde980afb0 100644 --- a/md/UBERON/38/UBERON_2000438.md +++ b/md/UBERON/38/UBERON_2000438.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000438 * *Label* = parhypural - * *Definition* = Haemal spine of last hemal arch that is pierced by the haemal canal through which the caudal vessels pass or haemal arch of preural centrum 1. Its distal part commonly supports lepidotrichia. The parhypural is an unpaired median haemal spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Haemal spine of last hemal arch that is pierced by the haemal canal through which the caudal vessels pass or haemal arch of preural centrum 1. Its distal part commonly supports lepidotrichia. The parhypural is an unpaired median haemal spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The parhypural is frequently confused with the arch plus spine of preural centrum 1. ## Synonyms - * hemal spine of preural centrum 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000438] - * parahypural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000438] - * parhypural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * parhypural hypaxonal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000133] - * parhyural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000438] - * phy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000438] - * prohypural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000143] + * hemal spine of preural centrum 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000438 ] + * parahypural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000438 ] + * parhypural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * parhypural hypaxonal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000133 ] + * parhyural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000438 ] + * phy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000438 ] + * prohypural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000143 ] ## Cross-references @@ -41,7 +41,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2000562 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2000638.md b/md/UBERON/38/UBERON_2000638.md index 0636626abc..7212436845 100644 --- a/md/UBERON/38/UBERON_2000638.md +++ b/md/UBERON/38/UBERON_2000638.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000638 * *Label* = commissura rostral, pars dorsalis - * *Definition* = Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209] + * *Definition* = Part of the anterior commissure which is located immediately ventral to the supracommissural nucleus of area ventralis telencephali. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209 ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2000838.md b/md/UBERON/38/UBERON_2000838.md index 5b5cf8c8ce..36855bad06 100644 --- a/md/UBERON/38/UBERON_2000838.md +++ b/md/UBERON/38/UBERON_2000838.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000838[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000838, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_2001038.md b/md/UBERON/38/UBERON_2001038.md index c26da8b2e2..7a6dc3db35 100644 --- a/md/UBERON/38/UBERON_2001038.md +++ b/md/UBERON/38/UBERON_2001038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001038 * *Label* = sclerotome somite 16 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2001538.md b/md/UBERON/38/UBERON_2001538.md index f66408adf7..f792e92567 100644 --- a/md/UBERON/38/UBERON_2001538.md +++ b/md/UBERON/38/UBERON_2001538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001538 * *Label* = pelvic radial cartilage - * *Definition* = Small cartilage that forms at the posterior edge of the basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small cartilage that forms at the posterior edge of the basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TO DO: reconcile cartilage elements of fin with bony elements (e.g. develops from and labeling). ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2001938.md b/md/UBERON/38/UBERON_2001938.md index 72a4517aa6..823d9ba9ed 100644 --- a/md/UBERON/38/UBERON_2001938.md +++ b/md/UBERON/38/UBERON_2001938.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001938 * *Label* = maxillary barbel - * *Definition* = Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2002038.md b/md/UBERON/38/UBERON_2002038.md index edeb9c0095..926ad1a246 100644 --- a/md/UBERON/38/UBERON_2002038.md +++ b/md/UBERON/38/UBERON_2002038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002038 * *Label* = basioccipital-exoccipital joint - * *Definition* = Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [basioccipital bone](../../UBERON/92/UBERON_0001692.md) and [core#connects](../../ts/core#connects.md) some [exoccipital bone](../../UBERON/93/UBERON_0001693.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2005038.md b/md/UBERON/38/UBERON_2005038.md index 57ba0c0f42..8e3248b39e 100644 --- a/md/UBERON/38/UBERON_2005038.md +++ b/md/UBERON/38/UBERON_2005038.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_2005338.md b/md/UBERON/38/UBERON_2005338.md index e799585f5d..753c9daf59 100644 --- a/md/UBERON/38/UBERON_2005338.md +++ b/md/UBERON/38/UBERON_2005338.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005338 * *Label* = posterior recess - * *Definition* = Posterior protrusion of the third ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Posterior protrusion of the third ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * posterior recess of diencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005338] + * posterior recess of diencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005338 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3000038.md b/md/UBERON/38/UBERON_3000038.md index 5f8e335d85..563ebdf9dc 100644 --- a/md/UBERON/38/UBERON_3000038.md +++ b/md/UBERON/38/UBERON_3000038.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3000438.md b/md/UBERON/38/UBERON_3000438.md index 9961a86b93..5692e67290 100644 --- a/md/UBERON/38/UBERON_3000438.md +++ b/md/UBERON/38/UBERON_3000438.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3000538.md b/md/UBERON/38/UBERON_3000538.md index 77f415fbc2..4bcceffedd 100644 --- a/md/UBERON/38/UBERON_3000538.md +++ b/md/UBERON/38/UBERON_3000538.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3000938.md b/md/UBERON/38/UBERON_3000938.md index 3aa8602e0a..b14ee65a5c 100644 --- a/md/UBERON/38/UBERON_3000938.md +++ b/md/UBERON/38/UBERON_3000938.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000938 * *Label* = postzonal element - * *Definition* = All those parts of the pectoral girdle that lies posterior to the zonal area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = All those parts of the pectoral girdle that lies posterior to the zonal area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3010138.md b/md/UBERON/38/UBERON_3010138.md index c2abd53d9d..5571ece177 100644 --- a/md/UBERON/38/UBERON_3010138.md +++ b/md/UBERON/38/UBERON_3010138.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010138 * *Label* = trabecular horn - * *Definition* = Anterior extensions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:curator] + * *Definition* = Anterior extensions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:curator ] ## Synonyms - * trabecular horns [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010138] + * trabecular horns [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010138 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3010538.md b/md/UBERON/38/UBERON_3010538.md index bf849f67b9..59a0e064ff 100644 --- a/md/UBERON/38/UBERON_3010538.md +++ b/md/UBERON/38/UBERON_3010538.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010538 * *Label* = pars nervosa - * *Definition* = Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3010638.md b/md/UBERON/38/UBERON_3010638.md index 49b3d5c2ad..43bafe1eb0 100644 --- a/md/UBERON/38/UBERON_3010638.md +++ b/md/UBERON/38/UBERON_3010638.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010638 * *Label* = obsolete ciliary cell - * *Definition* = A type of cell that develops in embryos and functions in embryonic movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A type of cell that develops in embryos and functions in embryonic movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] * *Comment* = replace with CL_0007018 once cl is released. ## Synonyms - * ciliary cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010638] + * ciliary cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010638 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_3010738.md b/md/UBERON/38/UBERON_3010738.md index 6c54c9b8f8..636c392f44 100644 --- a/md/UBERON/38/UBERON_3010738.md +++ b/md/UBERON/38/UBERON_3010738.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010738 * *Label* = M. palmaris profundis - * *Definition* = Originates on the ulnar aspect of the radioulna and inserts on the palmar aponeurosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ulnar aspect of the radioulna and inserts on the palmar aponeurosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_3010838.md b/md/UBERON/38/UBERON_3010838.md index f65bd5ae50..6ba6ab75d3 100644 --- a/md/UBERON/38/UBERON_3010838.md +++ b/md/UBERON/38/UBERON_3010838.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010838 * *Label* = Anterolateral Supplementary Element - * *Definition* = A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A muscle slip arising from the lingual surface of the mandible on the anterior portion of the bone. The fibers pass anteriorly, parallel to the mandible, and attach upon the ventral surface of the m. submentalis (Tyler, 1971). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_4000038.md b/md/UBERON/38/UBERON_4000038.md index 6fad02c563..2ab86c90a7 100644 --- a/md/UBERON/38/UBERON_4000038.md +++ b/md/UBERON/38/UBERON_4000038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000038 * *Label* = obsolete preameloblast - * *Definition* = Skeletogenic cell that has the potential to develop into an ameloblast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that has the potential to develop into an ameloblast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007000 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/38/UBERON_4000138.md b/md/UBERON/38/UBERON_4000138.md index 0dc6048e98..13ccc836b3 100644 --- a/md/UBERON/38/UBERON_4000138.md +++ b/md/UBERON/38/UBERON_4000138.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000138 * *Label* = ligamentous replacement element - * *Definition* = Replacement element that forms as a replacement of a ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Replacement element that forms as a replacement of a ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_4200038.md b/md/UBERON/38/UBERON_4200038.md index 95379ca6ee..b4b1fc6f2b 100644 --- a/md/UBERON/38/UBERON_4200038.md +++ b/md/UBERON/38/UBERON_4200038.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/38/UBERON_4300038.md b/md/UBERON/38/UBERON_4300038.md index f7d6d12616..ea19b94d96 100644 --- a/md/UBERON/38/UBERON_4300038.md +++ b/md/UBERON/38/UBERON_4300038.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300038 * *Label* = facet - * *Definition* = A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/facet] + * *Definition* = A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/facet ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0000039.md b/md/UBERON/39/UBERON_0000039.md index 00d427d53c..18ae5d66f8 100644 --- a/md/UBERON/39/UBERON_0000039.md +++ b/md/UBERON/39/UBERON_0000039.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000039 * *Label* = follicular antrum - * *Definition* = Region of ovarian follicle filled with follicular fluid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_antrum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Follicular_antrum] + * *Definition* = Region of ovarian follicle filled with follicular fluid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_antrum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Follicular_antrum ] ## Synonyms - * antral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18675] - * antrum folliculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18675] - * antrum follicularum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_antrum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * antral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18675 ] + * antrum folliculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18675 ] + * antrum follicularum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_antrum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0000439.md b/md/UBERON/39/UBERON_0000439.md index ef57ba2922..f5ffb511d3 100644 --- a/md/UBERON/39/UBERON_0000439.md +++ b/md/UBERON/39/UBERON_0000439.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000439 * *Label* = arachnoid trabecula - * *Definition* = The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_trabeculae] + * *Definition* = The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_trabeculae ] ## Synonyms - * arachnoid trabeculae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * trabecula arachnoideum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arachnoid trabeculae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * trabecula arachnoideum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [trabecula](../../UBERON/40/UBERON_0000440.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0000939.md b/md/UBERON/39/UBERON_0000939.md index 2d7ee63f8b..c8e97c9c24 100644 --- a/md/UBERON/39/UBERON_0000939.md +++ b/md/UBERON/39/UBERON_0000939.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000939 * *Label* = imaginal disc - * *Definition* = A tissue in the larva which gives rise to the adult external cuticle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Imaginal_disc] + * *Definition* = A tissue in the larva which gives rise to the adult external cuticle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Imaginal_disc ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001139.md b/md/UBERON/39/UBERON_0001139.md index c5ae6f9663..88abb70d95 100644 --- a/md/UBERON/39/UBERON_0001139.md +++ b/md/UBERON/39/UBERON_0001139.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001139 * *Label* = common iliac vein - * *Definition* = In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_iliac_vein] + * *Definition* = In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_iliac_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * common iliac venous tree - * vena iliaca communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_iliac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena iliaca communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_iliac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002143 * OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA * SCTID:181398004 - * UMLS:C0226758 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Iliac_Vein] + * UMLS:C0226758 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Iliac_Vein ] * Wikipedia:Common_iliac_vein * galen:CommonIliacVein * http://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001239.md b/md/UBERON/39/UBERON_0001239.md index 19a0a9ee78..5b3cbb1d35 100644 --- a/md/UBERON/39/UBERON_0001239.md +++ b/md/UBERON/39/UBERON_0001239.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001239 * *Label* = muscularis mucosae of large intestine - * *Definition* = A muscularis mucosa that is part of a large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:15655 * MA:0002689 - * UMLS:C0734776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Muscularis_Mucosa] + * UMLS:C0734776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Muscularis_Mucosa ] * ncithesaurus:Large_Intestinal_Muscularis_Mucosa ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001339.md b/md/UBERON/39/UBERON_0001339.md index c0a17ae31b..eccf391cc5 100644 --- a/md/UBERON/39/UBERON_0001339.md +++ b/md/UBERON/39/UBERON_0001339.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001339 * *Label* = ischiocavernosus muscle - * *Definition* = The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] + * *Definition* = The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] ## Synonyms - * musculus ishiocavernosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * erector penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] - * ischiocavernosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] - * ischiocavernosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] - * ischiocavernous muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] - * ishiocavernosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] - * ishiocavernosus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiocavernosus_muscle] + * musculus ishiocavernosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * erector penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] + * ischiocavernosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] + * ischiocavernosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] + * ischiocavernous muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] + * ishiocavernosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] + * ishiocavernosus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiocavernosus_muscle ] ## Cross-references * FMA:19730 * MA:0002330 * SCTID:244975004 - * UMLS:C0224401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ischiocavernosus] + * UMLS:C0224401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ischiocavernosus ] * Wikipedia:Ischiocavernosus_muscle * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png * ncithesaurus:Ischiocavernosus @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001439.md b/md/UBERON/39/UBERON_0001439.md index 40dc4aaf78..34f0291a8d 100644 --- a/md/UBERON/39/UBERON_0001439.md +++ b/md/UBERON/39/UBERON_0001439.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001439 * *Label* = compact bone - * *Definition* = one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Compact_bone] + * *Definition* = one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Compact_bone ] * *Comment* = MP distinguishes compact/cortical bone. in other AOs they are syns ## Synonyms - * bony cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0002753] + * bony cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0002753 ] * compact bone tissue * cortical bone * cortical bone tissue * cortical region of bone * substantia compacta (pars ossea) - * substantia corticalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24018[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * substantia corticalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24018, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:24018 * MA:0001461 * SCTID:361728003 - * UMLS:C0222661 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cortical_Bone] + * UMLS:C0222661 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cortical_Bone ] * Wikipedia:Compact_bone * galen:CorticalBone * ncithesaurus:Cortical_Bone @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001539.md b/md/UBERON/39/UBERON_0001539.md index 50ceb6f43a..a034f5a8b5 100644 --- a/md/UBERON/39/UBERON_0001539.md +++ b/md/UBERON/39/UBERON_0001539.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001539 * *Label* = dorsalis pedis artery - * *Definition* = In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsalis_pedis_artery] + * *Definition* = In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsalis_pedis_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria dorsalis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43915[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria dorsalis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43915, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * dorsal artery of foot - * arteria dorsalis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsalis_pedis_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria dorsalis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsalis_pedis_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:43915 * MA:0001942 * SCTID:181362007 - * UMLS:C0226492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsalis_Pedis_Artery] + * UMLS:C0226492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsalis_Pedis_Artery ] * Wikipedia:Dorsalis_pedis_artery * galen:DorsalisPedisArtery * http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001639.md b/md/UBERON/39/UBERON_0001639.md index 6a1e65ad47..60fefdf0e9 100644 --- a/md/UBERON/39/UBERON_0001639.md +++ b/md/UBERON/39/UBERON_0001639.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001639 * *Label* = hepatic portal vein - * *Definition* = A portal vein that transports nutrients from the digestive tract to the liver[Kardong]. A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_portal_vein[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376] + * *Definition* = A portal vein that transports nutrients from the digestive tract to the liver[Kardong]. A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_portal_vein, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376 ] ## Synonyms * hepatic portal tree - * liver portal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portal vein of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * liver portal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portal vein of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * HPV - * portal vein [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * primary hepatic portal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005090] + * portal vein [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * primary hepatic portal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005090 ] * primary hepatic portal veins - * vena portae hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_portal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena portae hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_portal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,7 +37,7 @@ * [portal vein](../../UBERON/17/UBERON_0002017.md) * [part_of](../../BFO/50/BFO_0000050.md) some [hepatic portal system](../../UBERON/94/UBERON_0010194.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) * [develops from](../../RO/02/RO_0002202.md) some [vitelline vein](../../UBERON/87/UBERON_0005487.md) ## Equivalencies @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Adults of all vertebrates lose the vitelline veins and establish a single large hepatic portal vein (...) by the selective retention of parts of the left and right subintestinals and of several anastomoses that occur between them within and just posterior to the liver.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001739.md b/md/UBERON/39/UBERON_0001739.md index e7459cd1b1..9f24a3851d 100644 --- a/md/UBERON/39/UBERON_0001739.md +++ b/md/UBERON/39/UBERON_0001739.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001739 * *Label* = laryngeal cartilage - * *Definition* = the cartilaginous structures that support the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002256] + * *Definition* = the cartilaginous structures that support the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002256 ] ## Synonyms - * cartilage of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55108] - * cartilagines laryngeales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * larynx cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001550] + * cartilage of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55108 ] + * cartilagines laryngeales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * larynx cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001550 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0001758 * MESH:A02.165.507 * SCTID:263482005 - * UMLS:C0023050 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Cartilage] + * UMLS:C0023050 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Cartilage ] * VHOG:0001550 * ncithesaurus:Laryngeal_Cartilage @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_64159 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001839.md b/md/UBERON/39/UBERON_0001839.md index 28ca5bdf7f..efd09e31b5 100644 --- a/md/UBERON/39/UBERON_0001839.md +++ b/md/UBERON/39/UBERON_0001839.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001839 * *Label* = bony labyrinth - * *Definition* = A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bony_labyrinth] + * *Definition* = A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bony_labyrinth ] * *Comment* = Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved. ## Synonyms * osseous labyrinth - * labyrinthus osseus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bony_labyrinth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labyrinthus osseus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bony_labyrinth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * osseus labyrinth ## Cross-references @@ -21,7 +21,7 @@ * FMA:60179 * MA:0000238 * SCTID:279727008 - * UMLS:C0458699 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Osseous_Labyrinth] + * UMLS:C0458699 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Osseous_Labyrinth ] * VHOG:0001219 * Wikipedia:Bony_labyrinth * XAO:0000193 @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0001939.md b/md/UBERON/39/UBERON_0001939.md index 7db2feb860..d3de2bfb29 100644 --- a/md/UBERON/39/UBERON_0001939.md +++ b/md/UBERON/39/UBERON_0001939.md @@ -9,11 +9,11 @@ * internal mammillary nucleus * medial nucleus of mammillary body - * nucleus mammillaris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62342[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * MM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1299[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medial mamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MM] - * medial mammillary nucleus, body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MM] - * preoptic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:376] + * nucleus mammillaris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62342, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * MM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1299, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medial mamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MM ] + * medial mammillary nucleus, body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MM ] + * preoptic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:376 ] ## Cross-references @@ -24,10 +24,10 @@ * FMA:62342 * MA:0000851 * NIF_GrossAnatomy:birnlex_1299 - * NeuroNames:376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1299] + * NeuroNames:376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1299 ] * SCTID:369141009 - * UMLS:C0175329 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1299] - * UMLS:C1289568 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1299] + * UMLS:C0175329 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1299 ] + * UMLS:C1289568 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1299 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002039.md b/md/UBERON/39/UBERON_0002039.md index d8086a9a69..cca94fc666 100644 --- a/md/UBERON/39/UBERON_0002039.md +++ b/md/UBERON/39/UBERON_0002039.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002039 * *Label* = inferior phrenic vein - * *Definition* = The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_phrenic_vein] + * *Definition* = The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_phrenic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae phrenicae inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_phrenic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae phrenicae inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_phrenic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002139.md b/md/UBERON/39/UBERON_0002139.md index 1718df15b6..113a6094dc 100644 --- a/md/UBERON/39/UBERON_0002139.md +++ b/md/UBERON/39/UBERON_0002139.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002139 * *Label* = subcommissural organ - * *Definition* = The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9579598[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcommissural_organ] + * *Definition* = The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9579598, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcommissural_organ ] * *Comment* = Occurs throughout the vertebartes [PMID:9579598, doi:10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[doi:10.1007/BF00303086] ## Synonyms * SCO - * cerebral aqueduct subcommissural organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCO] - * corpus subcommissurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:483[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cerebral aqueduct subcommissural organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCO ] + * corpus subcommissurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:483, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * dorsal subcommissural organ - * organum subcommissurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcommissural_organ[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organum subcommissurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcommissural_organ, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,10 +24,10 @@ * MA:0002941 * MESH:A08.713.810 * NIF_GrossAnatomy:birnlex_1028 - * NeuroNames:483 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1028] + * NeuroNames:483 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1028 ] * SCTID:369193006 * TAO:0000683 - * UMLS:C0038533 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1028] + * UMLS:C0038533 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1028 ] * Wikipedia:Subcommissural_organ * ZFA:0000683 * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png @@ -56,8 +56,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002239.md b/md/UBERON/39/UBERON_0002239.md index a820839861..30e45cdb72 100644 --- a/md/UBERON/39/UBERON_0002239.md +++ b/md/UBERON/39/UBERON_0002239.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002239 * *Label* = floating rib - * *Definition* = A rib that is not connected to sternum or sternal cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Floating_rib] + * *Definition* = A rib that is not connected to sternum or sternal cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Floating_rib ] ## Synonyms - * costa fluitante [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * costa fluitante [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * vertebral rib - * costae fluctuantes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Floating_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * costae fluitantes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Floating_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * costae fluctuantes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Floating_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * costae fluitantes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Floating_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002339.md b/md/UBERON/39/UBERON_0002339.md index 5afca01594..48cfc117c1 100644 --- a/md/UBERON/39/UBERON_0002339.md +++ b/md/UBERON/39/UBERON_0002339.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002339 * *Label* = epithelium of lobar bronchus - * *Definition* = the tissue made up of epithelial cells that lines the inside of the lobar bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060481] + * *Definition* = the tissue made up of epithelial cells that lines the inside of the lobar bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060481 ] ## Synonyms - * epithelial tissue of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lobar bronchial epithelium - * lobar bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lobar bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lobar bronchus epithelium - * secondary bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * secondary bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002439.md b/md/UBERON/39/UBERON_0002439.md index 15e368d159..1d09203751 100644 --- a/md/UBERON/39/UBERON_0002439.md +++ b/md/UBERON/39/UBERON_0002439.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002439 * *Label* = myenteric nerve plexus - * *Definition* = One of two ganglionated neural networks which together form the enteric nervous system. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100306] + * *Definition* = One of two ganglionated neural networks which together form the enteric nervous system. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100306 ] * *Comment* = AO notes: note that FMA uses Meissner's plexus as a synonym, rather than separate class ## Synonyms - * Auberbach plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100306] - * Auberbach's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100306] - * Auberbachs plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100306] - * Auerbach's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63252[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0002251] - * Remak's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63252] + * Auberbach plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100306 ] + * Auberbach's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100306 ] + * Auberbachs plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100306 ] + * Auerbach's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63252, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0002251 ] + * Remak's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63252 ] * myenteric plexus - * plexus nervosus submucosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63252[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus submucosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63252[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Meissner's plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63252[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * plexus myentericus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002436] + * plexus nervosus submucosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63252, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus submucosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63252, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Meissner's plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63252, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * plexus myentericus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002436 ] * submucous plexus ## Cross-references @@ -31,7 +31,7 @@ * MESH:A08.800.050.050.500 * NIF_GrossAnatomy:nlx_anat_100306 * SCTID:267716001 - * UMLS:C0027028 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myenteric_Nerve_Plexus] + * UMLS:C0027028 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myenteric_Nerve_Plexus ] * Wikipedia:Auerbach's_plexus * ncithesaurus:Myenteric_Nerve_Plexus @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = plexus of unmyelinated nerve fibers and postganglionic autonomic cell bodies lying in the muscular coat of the esophagus, stomach and intestines that communicate with the submucosal, subserosal and enteric plexuses[MP][MP:0010801]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002539.md b/md/UBERON/39/UBERON_0002539.md index 6cba11c580..17a9db7e31 100644 --- a/md/UBERON/39/UBERON_0002539.md +++ b/md/UBERON/39/UBERON_0002539.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002539 * *Label* = pharyngeal arch - * *Definition* = One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:branchial+arch[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16313389[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_arch] + * *Definition* = One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:branchial+arch, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16313389, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_arch ] * *Comment* = Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering ## Synonyms - * pharyngeal arches [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * branchial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001785[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002884] - * arcus pharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pharyngeal arches [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * branchial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001785, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002884 ] + * arcus pharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * visceral arch ## Cross-references @@ -26,7 +26,7 @@ * MIAA:0000242 * SCTID:308766004 * TAO:0001306 - * UMLS:C0080322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Arch] + * UMLS:C0080322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Arch ] * VHOG:0000155 * Wikipedia:Pharyngeal_arch * XAO:0000096 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002639.md b/md/UBERON/39/UBERON_0002639.md index 76f5a66127..a21eac013a 100644 --- a/md/UBERON/39/UBERON_0002639.md +++ b/md/UBERON/39/UBERON_0002639.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002639 * *Label* = midbrain reticular formation - * *Definition* = A reticular formation that is part of a midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A reticular formation that is part of a midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * reticular formation of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62406] - * tegmental reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62406] - * MBRF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1235[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * formatio reticularis mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:501[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * formatio reticularis tegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:501[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * formatio reticularis tegmenti mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:501[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia reticularis mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:501[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * reticular formation of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62406 ] + * tegmental reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62406 ] + * MBRF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1235, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * formatio reticularis mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:501, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * formatio reticularis tegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:501, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * formatio reticularis tegmenti mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:501, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia reticularis mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:501, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,9 +21,9 @@ * BM:MB-MBRF * FMA:62406 * NIF_GrossAnatomy:birnlex_1235 - * NeuroNames:501 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1235] + * NeuroNames:501 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1235 ] * SCTID:369234009 - * UMLS:C0228394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1235] + * UMLS:C0228394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1235 ] ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [reticular formation](../../UBERON/75/UBERON_0002275.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002739.md b/md/UBERON/39/UBERON_0002739.md index 1cf1d159e0..10f7f28a09 100644 --- a/md/UBERON/39/UBERON_0002739.md +++ b/md/UBERON/39/UBERON_0002739.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002739 * *Label* = medial dorsal nucleus of thalamus - * *Definition* = The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Gttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_dorsal_nucleus] + * *Definition* = The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Gttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_dorsal_nucleus ] ## Synonyms - * dorsal medial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * dorsomedial nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * dorsomedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * dorsomedial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial dorsal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1543] - * medial nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * medial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * mediodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * mediodorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:MD] - * mediodorsal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62156] - * nucleus dorsomedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1543] - * nucleus medialis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1543] - * dorsal thalamus medial division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MED] - * medial group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MED] - * medial thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MED] - * mediodorsal nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:312] - * nuclei mediales (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:312[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis dorsalis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:312[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis dorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:312[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus mediodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002453] - * nucleus mediodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_dorsal_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus thalamicus mediodorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:312[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal medial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * dorsomedial nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * dorsomedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * dorsomedial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial dorsal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1543 ] + * medial nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * medial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * mediodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * mediodorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:MD ] + * mediodorsal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62156 ] + * nucleus dorsomedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1543 ] + * nucleus medialis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1543 ] + * dorsal thalamus medial division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MED ] + * medial group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MED ] + * medial thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MED ] + * mediodorsal nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:312 ] + * nuclei mediales (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:312, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis dorsalis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:312, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis dorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:312, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus mediodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002453 ] + * nucleus mediodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_dorsal_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus thalamicus mediodorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:312, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -47,9 +47,9 @@ * GAID:663 * MESH:A08.186.211.730.385.826.701.490 * NIF_GrossAnatomy:birnlex_1543 - * NeuroNames:312 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1543] + * NeuroNames:312 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1543 ] * SCTID:279149008 - * UMLS:C0228329 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus] + * UMLS:C0228329 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus ] * Wikipedia:Medial_dorsal_nucleus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -73,8 +73,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002839.md b/md/UBERON/39/UBERON_0002839.md index 789c14ed91..f9363b202e 100644 --- a/md/UBERON/39/UBERON_0002839.md +++ b/md/UBERON/39/UBERON_0002839.md @@ -6,15 +6,15 @@ ## Synonyms - * second cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6315] - * second cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6315] + * second cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6315 ] + * second cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6315 ] ## Cross-references * EMAPA:25155 * FMA:6315 * NIF_GrossAnatomy:birnlex_2604 - * UMLS:C0501693 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2604] + * UMLS:C0501693 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2604 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0002939.md b/md/UBERON/39/UBERON_0002939.md index 7816917575..51d5629ccd 100644 --- a/md/UBERON/39/UBERON_0002939.md +++ b/md/UBERON/39/UBERON_0002939.md @@ -6,23 +6,23 @@ ## Synonyms - * nucleus ventralis posterior inferior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62199[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral posterior inferior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62199] - * ventral posterior inferior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62199] - * ventral posterior inferior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62199] - * VPN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004373[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei ventrales posteriores thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002464] - * nuclei ventrobasales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002464] - * ventral posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventral posterior complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventral posterior inferior nucleus of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPI] - * ventral posterior nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002464] - * ventral posterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002464] - * ventral posterolateral thalamic nucleus, inferior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPI] - * ventroposterior inferior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004374] - * ventroposterior inferior thalamic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPI] - * ventroposterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004373] - * ventroposterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] + * nucleus ventralis posterior inferior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62199, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral posterior inferior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62199 ] + * ventral posterior inferior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62199 ] + * ventral posterior inferior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62199 ] + * VPN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004373, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei ventrales posteriores thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002464 ] + * nuclei ventrobasales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002464 ] + * ventral posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventral posterior complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventral posterior inferior nucleus of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPI ] + * ventral posterior nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002464 ] + * ventral posterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002464 ] + * ventral posterolateral thalamic nucleus, inferior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPI ] + * ventroposterior inferior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004374 ] + * ventroposterior inferior thalamic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPI ] + * ventroposterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004373 ] + * ventroposterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] ## Cross-references @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003039.md b/md/UBERON/39/UBERON_0003039.md index ee18a2cade..30f57d245c 100644 --- a/md/UBERON/39/UBERON_0003039.md +++ b/md/UBERON/39/UBERON_0003039.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003039 * *Label* = anterior commissure anterior part - * *Definition* = the horseshoe-shaped tract that connects the two olfactory bulbs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010859] + * *Definition* = the horseshoe-shaped tract that connects the two olfactory bulbs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010859 ] ## Synonyms - * anterior commissure pars anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010859] - * anterior commissure, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61963] - * anterior part of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61963] - * anterior part of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008230] - * olfactory limb of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61963] - * olfactory part of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61963] - * pars anterior commissurae anterioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008230] - * pars anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008230] - * anterior commissure olfactory limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:aco] - * anterior commissure, olfactory limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:aco] + * anterior commissure pars anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010859 ] + * anterior commissure, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61963 ] + * anterior part of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61963 ] + * anterior part of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008230 ] + * olfactory limb of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61963 ] + * olfactory part of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61963 ] + * pars anterior commissurae anterioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008230 ] + * pars anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008230 ] + * anterior commissure olfactory limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:aco ] + * anterior commissure, olfactory limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:aco ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior commissure](../../UBERON/35/UBERON_0000935.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003139.md b/md/UBERON/39/UBERON_0003139.md index 15362c044a..e422d0fdf6 100644 --- a/md/UBERON/39/UBERON_0003139.md +++ b/md/UBERON/39/UBERON_0003139.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00001728 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000462 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003139 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/39/UBERON_0003239.md b/md/UBERON/39/UBERON_0003239.md index d47d6fb701..0851186781 100644 --- a/md/UBERON/39/UBERON_0003239.md +++ b/md/UBERON/39/UBERON_0003239.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003239 * *Label* = epithelium of posterior semicircular canal - * *Definition* = An epithelium that is part of a posterior semicircular canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a posterior semicircular canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of posterior semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior semicircular canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior semicircular canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of posterior semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior semicircular canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior semicircular canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior semicircular canal](../../UBERON/42/UBERON_0001842.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003339.md b/md/UBERON/39/UBERON_0003339.md index 23fe12cfba..045f4176b9 100644 --- a/md/UBERON/39/UBERON_0003339.md +++ b/md/UBERON/39/UBERON_0003339.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003339 * *Label* = ganglion of central nervous system - * *Definition* = A ganglion that is part of a central nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A ganglion that is part of a central nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = this has no subclasses in FMA. In EHDAA2 it has only the cranial ganglia ## Synonyms - * central nervous system ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neuraxis ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * central nervous system ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neuraxis ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central nervous system](../../UBERON/17/UBERON_0001017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003439.md b/md/UBERON/39/UBERON_0003439.md index edd88ce0b3..ee6fa1a0d2 100644 --- a/md/UBERON/39/UBERON_0003439.md +++ b/md/UBERON/39/UBERON_0003439.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003439 * *Label* = nerve of trunk region - * *Definition* = A nerve that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check EMAPA ## Synonyms - * nerve of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000515] + * nerve of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000515 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003539.md b/md/UBERON/39/UBERON_0003539.md index 615fc5be5b..52f5f68773 100644 --- a/md/UBERON/39/UBERON_0003539.md +++ b/md/UBERON/39/UBERON_0003539.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003539 * *Label* = left lung bronchiole - * *Definition* = A bronchiole that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiole of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiole of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:19000 * MA:0001778 * SCTID:200484003 - * UMLS:C0225674 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung_Bronchiole] + * UMLS:C0225674 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung_Bronchiole ] * ncithesaurus:Left_Lung_Bronchiole ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003639.md b/md/UBERON/39/UBERON_0003639.md index fe6c2e8ae2..804d6f8877 100644 --- a/md/UBERON/39/UBERON_0003639.md +++ b/md/UBERON/39/UBERON_0003639.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003639 * *Label* = manual digit 5 phalanx - * *Definition* = A phalanx that is part of a hand digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a hand digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 5 th digit of hand digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th digit of hand long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th digit of hand phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 5 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of 5 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001393] - * little finger phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35489] - * long bone of digit of 5 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of 5 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 5 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of 5 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 5 th digit of hand digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th digit of hand long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th digit of hand phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 5 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of 5 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001393 ] + * little finger phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35489 ] + * long bone of digit of 5 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of 5 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 5 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of 5 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * phalanx of 5th finger - * phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35489] - * phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35489] - * phalanx of manual digitus minimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35489 ] + * phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35489 ] + * phalanx of manual digitus minimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -45,7 +45,7 @@ * FMA:35489 * MA:0001393 * SCTID:361789008 - * UMLS:C1708317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_5_Phalanx] + * UMLS:C1708317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_5_Phalanx ] * ncithesaurus:Hand_Digit_5_Phalanx ## Subsets @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003839.md b/md/UBERON/39/UBERON_0003839.md index cff78675f9..4968e52f3f 100644 --- a/md/UBERON/39/UBERON_0003839.md +++ b/md/UBERON/39/UBERON_0003839.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003839 * *Label* = forelimb joint - * *Definition* = A limb joint that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb joint that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anteriormost limb limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * joint of limb of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anteriormost limb limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * joint of limb of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71344 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0003939.md b/md/UBERON/39/UBERON_0003939.md index cdcba8f075..83ccf49253 100644 --- a/md/UBERON/39/UBERON_0003939.md +++ b/md/UBERON/39/UBERON_0003939.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003939 * *Label* = transverse gyrus of Heschl - * *Definition* = the area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000803[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_temporal_gyrus] + * *Definition* = the area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000803, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_temporal_gyrus ] ## Synonyms - * gyri temporales transversi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_temporal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyri temporales transversi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_temporal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004039.md b/md/UBERON/39/UBERON_0004039.md index b5f732ce02..ca6e2294ee 100644 --- a/md/UBERON/39/UBERON_0004039.md +++ b/md/UBERON/39/UBERON_0004039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004039 * *Label* = obsolete retinal rod cell outer segment - * *Definition* = the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008456] + * *Definition* = the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008456 ] * *Comment* = request from GO as subclass of photoreceptor segment ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004039 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/39/UBERON_0004139.md b/md/UBERON/39/UBERON_0004139.md index 45027397fc..60736b2f1a 100644 --- a/md/UBERON/39/UBERON_0004139.md +++ b/md/UBERON/39/UBERON_0004139.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004139 * *Label* = cardiogenic plate - * *Definition* = The first recognizable structure derived from the heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003142] + * *Definition* = The first recognizable structure derived from the heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003142 ] * *Comment* = TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO ## Synonyms - * myocardial plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000215] - * cardiogenic crescent [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003142] + * myocardial plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000215 ] + * cardiogenic crescent [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003142 ] * heart rudiment ## Cross-references @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In vertebrates) The embryonic mesoderm is the source of both the cardiogenic plate, giving rise to the future myocardium as well as the endocardium that will line the system on the inner side.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004239.md b/md/UBERON/39/UBERON_0004239.md index b0fc5102d0..040657e402 100644 --- a/md/UBERON/39/UBERON_0004239.md +++ b/md/UBERON/39/UBERON_0004239.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004239 * *Label* = small intestine smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = MA class may specifically mean muscle layer, but we treat as the sum of smooth muscle in both muscle layer and muscularis mucosa ## Synonyms - * involuntary muscle of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,19 +36,20 @@ * [intestine smooth muscle](../../UBERON/21/UBERON_0004221.md) * [part_of](../../BFO/50/BFO_0000050.md) some [wall of small intestine](../../UBERON/68/UBERON_0001168.md) * [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [muscle layer of small intestine](../../UBERON/01/UBERON_0011201.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004339.md b/md/UBERON/39/UBERON_0004339.md index 98abb449aa..a6c7cdb679 100644 --- a/md/UBERON/39/UBERON_0004339.md +++ b/md/UBERON/39/UBERON_0004339.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004339 * *Label* = vault of skull - * *Definition* = Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000076[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calvaria_(skull)] + * *Definition* = Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000076, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calvaria_(skull) ] * *Comment* = Editor notes: We follow PMID:11523816 (Morriss-Kay) in definingenumerating the components of the skull vault. Note that there is a conflict with Kardong; e.g. in fig 7.10, Kardong places the squamosal in the temporal series. We cannot place the vault as entirely part of the dermatocranium as it has a small splanchnocranium contribution and a sclerotomal contribution. Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria ## Synonyms - * calva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52800] - * cranial vault [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005606] + * calva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52800 ] + * cranial vault [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005606 ] * skull vault * skull roof - * calvaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * calvaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * calvarium - * skullcap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005606] + * skullcap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005606 ] ## Cross-references @@ -23,7 +23,7 @@ * EMAPA:18016 * FMA:52800 * SCTID:140592008 - * UMLS:C0205950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skullcap] + * UMLS:C0205950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skullcap ] * VHOG:0000331 * Wikipedia:Calvaria_(skull) * ZFA:0005606 @@ -37,7 +37,7 @@ * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) ## Equivalencies @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The earliest tetrapods arose from rhipidistian ancestors and retained many of their skull features, including most of the bones of the dermatocranium.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004439.md b/md/UBERON/39/UBERON_0004439.md index 2d935efc68..30e065868e 100644 --- a/md/UBERON/39/UBERON_0004439.md +++ b/md/UBERON/39/UBERON_0004439.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004439 * *Label* = proximal epiphysis of middle phalanx of manual digit 5 - * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a middle phalanx of manual digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of middle phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538] - * basal epiphysis of middle phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538] - * base of middle phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538] - * base of middle phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538] - * base of middle phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538] - * proximal epiphysis of middle phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37538[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of middle phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538 ] + * basal epiphysis of middle phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538 ] + * base of middle phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538 ] + * base of middle phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538 ] + * base of middle phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538 ] + * proximal epiphysis of middle phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37538, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of manual digit 5](../../UBERON/23/UBERON_0004323.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004539.md b/md/UBERON/39/UBERON_0004539.md index 839ac2e195..dcfb682714 100644 --- a/md/UBERON/39/UBERON_0004539.md +++ b/md/UBERON/39/UBERON_0004539.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004539 * *Label* = right kidney - * *Definition* = A kidney that is part of a right side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A kidney that is part of a right side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:7204 * MA:0001683 * SCTID:362208000 - * UMLS:C0227613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Kidney] + * UMLS:C0227613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Kidney ] * ncithesaurus:Right_Kidney ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004639.md b/md/UBERON/39/UBERON_0004639.md index 08160a2b18..ae51ab7590 100644 --- a/md/UBERON/39/UBERON_0004639.md +++ b/md/UBERON/39/UBERON_0004639.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004639 * *Label* = afferent arteriole - * *Definition* = The afferent arterioles are a group of blood vessels that supply the nephrons in many excretory systems. They play an important role in the regulation of blood pressure. The afferent arterioles branch from the renal artery which supplies blood to the kidneys. The afferent arterioles later diverge into the capillaries of the glomerulus. When renal blood flow is reduced, the macula densa releases prostaglandins, which cause the juxtaglomerular cells lining the afferent arterioles to release renin, activating the renin-angiotensin-aldosterone system, to increase blood pressure. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Afferent_arterioles] + * *Definition* = The afferent arterioles are a group of blood vessels that supply the nephrons in many excretory systems. They play an important role in the regulation of blood pressure. The afferent arterioles branch from the renal artery which supplies blood to the kidneys. The afferent arterioles later diverge into the capillaries of the glomerulus. When renal blood flow is reduced, the macula densa releases prostaglandins, which cause the juxtaglomerular cells lining the afferent arterioles to release renin, activating the renin-angiotensin-aldosterone system, to increase blood pressure. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Afferent_arterioles ] ## Synonyms - * afferent glomerular arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005307] - * kidney afferent arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011312] - * arteriola glomerularis afferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Afferent_arterioles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * afferent glomerular arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005307 ] + * kidney afferent arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011312 ] + * arteriola glomerularis afferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Afferent_arterioles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004739.md b/md/UBERON/39/UBERON_0004739.md index 2d81e35692..c9948aee3f 100644 --- a/md/UBERON/39/UBERON_0004739.md +++ b/md/UBERON/39/UBERON_0004739.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004739 * *Label* = pronephric glomerulus - * *Definition* = The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072013[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10572058[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15647339[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9268568[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000318] + * *Definition* = The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072013, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10572058, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15647339, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9268568, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000318 ] * *Comment* = a glomus differs from a glomerulus in that each vascular glomus services several tubules. ISBN10:0073040584 "Vertebrates, Kardong". AO notes: GO treats glomus and pronephric glomerulus differently ## Synonyms * glomerulus of pronephros - * glomus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000318] - * corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000318] - * glomera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * pronephric glomera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001237] - * pronephric glomeruli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001237[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * pronephric glomus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001237] + * glomus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000318 ] + * corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000318 ] + * glomera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * pronephric glomera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001237 ] + * pronephric glomeruli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001237, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * pronephric glomus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001237 ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The teleost pronephros shares many essential features with the amphibian pronephros including its derivation from mesoderm associated with the coelom and the derivation of the glomerular blood supply from the medial dorsal aorta. However, unlike the pronephros of amphibians, which have an external glomus and tubules with nephrostomes open to the coelom, the mature teleost pronephros has no connection to the body cavity and instead functions as a closed system (reference 1); This variation in nephron types [with external glomeruli that open into the coelom and with internal glomeruli that do not connect with the coelom] and their pattern of distribution suggest an evolutionary sequence. Ancestral craniates probably had an external glomerulus and nephrostomes, as do the first few to develop in very primitive craniates. (...) The mechanism would become more efficient as the coelomic recess into which each glomerulus discharged became a part of the tubule, that is, grew around the glomerulus as a renal capsule. The glomerulus becomes internal. The nephrostomes were lost during subsequent evolution, leaving the type of renal tubule found in most vertebrates (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004191 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0004939.md b/md/UBERON/39/UBERON_0004939.md index b8b2276896..347ca9cff8 100644 --- a/md/UBERON/39/UBERON_0004939.md +++ b/md/UBERON/39/UBERON_0004939.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004939 * *Label* = submucosa of common bile duct - * *Definition* = A submucosa that is part of a common bile duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a common bile duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * common bile duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common bile ductal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18011] - * ductus choledochus (biliaris) submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of ductus choledochus (biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * common bile duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common bile ductal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18011 ] + * ductus choledochus (biliaris) submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of ductus choledochus (biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [common bile duct](../../UBERON/74/UBERON_0001174.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005039.md b/md/UBERON/39/UBERON_0005039.md index 188663a882..5509c86402 100644 --- a/md/UBERON/39/UBERON_0005039.md +++ b/md/UBERON/39/UBERON_0005039.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005039 * *Label* = mucosa of bronchiole - * *Definition* = A mucosa that is part of a bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiole mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiole mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiole mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiole organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiole mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiole mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiole mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiole organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchiole](../../UBERON/86/UBERON_0002186.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005139.md b/md/UBERON/39/UBERON_0005139.md index cd46669f80..fd411e581e 100644 --- a/md/UBERON/39/UBERON_0005139.md +++ b/md/UBERON/39/UBERON_0005139.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005139 * *Label* = metanephric long descending thin limb - * *Definition* = The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072269] + * *Definition* = The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072269 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [long descending thin limb](../../UBERON/00/UBERON_0005100.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005239.md b/md/UBERON/39/UBERON_0005239.md index 438f4c0599..45fbe8c7c5 100644 --- a/md/UBERON/39/UBERON_0005239.md +++ b/md/UBERON/39/UBERON_0005239.md @@ -6,7 +6,7 @@ ## Synonyms - * metencephalon basal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001154] + * metencephalon basal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001154 ] ## Cross-references @@ -31,8 +31,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral half of the developing neural tube that is the metencephalon. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005339.md b/md/UBERON/39/UBERON_0005339.md index a3931977ce..f5306394c9 100644 --- a/md/UBERON/39/UBERON_0005339.md +++ b/md/UBERON/39/UBERON_0005339.md @@ -31,8 +31,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005439.md b/md/UBERON/39/UBERON_0005439.md index caac3803c1..6d4818ccc9 100644 --- a/md/UBERON/39/UBERON_0005439.md +++ b/md/UBERON/39/UBERON_0005439.md @@ -6,7 +6,7 @@ ## Synonyms - * Embryonic endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85519] + * Embryonic endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85519 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005639.md b/md/UBERON/39/UBERON_0005639.md index 03cfaeb73c..3f299a8c7e 100644 --- a/md/UBERON/39/UBERON_0005639.md +++ b/md/UBERON/39/UBERON_0005639.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005639 * *Label* = right lung cranial lobe epithelium - * *Definition* = An epithelium that is part of a upper lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a upper lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0005839.md b/md/UBERON/39/UBERON_0005839.md index dea7600a70..627b290843 100644 --- a/md/UBERON/39/UBERON_0005839.md +++ b/md/UBERON/39/UBERON_0005839.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005839 * *Label* = thoracic spinal cord dorsal column - * *Definition* = A subdivision of spinal cord dorsal column that is part of a thoracic spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord dorsal column that is part of a thoracic spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dorsal funiculus of thoracic segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258178] - * dorsal white column of thoracic segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258178] - * thoracic segment of dorsal funiculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258178] - * thoracic spinal cord posterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1442] + * dorsal funiculus of thoracic segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258178 ] + * dorsal white column of thoracic segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258178 ] + * thoracic segment of dorsal funiculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258178 ] + * thoracic spinal cord posterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1442 ] ## Cross-references * FMA:258178 * NIF_GrossAnatomy:birnlex_1442 - * UMLS:C0228634 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1442] + * UMLS:C0228634 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1442 ] ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [subdivision of spinal cord dorsal column](../../UBERON/79/UBERON_0006079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006139.md b/md/UBERON/39/UBERON_0006139.md index 45e7718413..4487f8ea62 100644 --- a/md/UBERON/39/UBERON_0006139.md +++ b/md/UBERON/39/UBERON_0006139.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006139 * *Label* = plantar digital vein - * *Definition* = The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plantar_digital_veins] + * *Definition* = The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plantar_digital_veins ] ## Synonyms - * venae digitales plantares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Plantar_digital_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae digitales plantares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Plantar_digital_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006239.md b/md/UBERON/39/UBERON_0006239.md index b7747d4ea6..bdb8b4979c 100644 --- a/md/UBERON/39/UBERON_0006239.md +++ b/md/UBERON/39/UBERON_0006239.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006239 * *Label* = future central tendon - * *Definition* = A tendon that has_potential_to_develop_into a central tendon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tendon that has_potential_to_develop_into a central tendon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Development notes: The cranial part of the septum transversum gives rise to the central tendon of the diaphragm and is the origin of the myoblasts that invade the pleuroperitoneal folds resulting in the formation of the muscular diaphragm. ## Synonyms - * cranial derivative of septum transversum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * cranial part of septum transversum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * cranial derivative of septum transversum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * cranial part of septum transversum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [central tendon of diaphragm](../../UBERON/70/UBERON_0006670.md) and [tendon](../../UBERON/43/UBERON_0000043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006339.md b/md/UBERON/39/UBERON_0006339.md index 912a309c06..121ef82124 100644 --- a/md/UBERON/39/UBERON_0006339.md +++ b/md/UBERON/39/UBERON_0006339.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006339 * *Label* = third ventricle choroid plexus stroma - * *Definition* = A choroid plexus stroma that is part of a third ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus stroma that is part of a third ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus stroma](../../UBERON/06/UBERON_0005206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006539.md b/md/UBERON/39/UBERON_0006539.md index 537177a5e4..ce2cffe449 100644 --- a/md/UBERON/39/UBERON_0006539.md +++ b/md/UBERON/39/UBERON_0006539.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006539 * *Label* = mammary gland fluid/secretion - * *Definition* = A fluid that is secreted by a mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fluid that is secreted by a mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006639.md b/md/UBERON/39/UBERON_0006639.md index 69bcf6f723..e0e7a051a6 100644 --- a/md/UBERON/39/UBERON_0006639.md +++ b/md/UBERON/39/UBERON_0006639.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006639 * *Label* = crus penis - * *Definition* = For their anterior three-fourths the corpora cavernosa penis lie in intimate apposition with one another, but behind they diverge in the form of two tapering processes, known as the crura, which are firmly connected to the ischial rami. Traced from behind forward, each crus begins by a blunt-pointed process in front of the tuberosity of the ischium, along the perineal surface of the conjoined (ischiopubic) ramus. Just before it meets its fellow it presents a slight enlargement, named by Georg Ludwig Kobelt (1804-1857) the bulb of the corpus cavernosum penis. Beyond this point the crus undergoes a constriction and merges into the corpus cavernosum proper, which retains a uniform diameter to its anterior end. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_penis] + * *Definition* = For their anterior three-fourths the corpora cavernosa penis lie in intimate apposition with one another, but behind they diverge in the form of two tapering processes, known as the crura, which are firmly connected to the ischial rami. Traced from behind forward, each crus begins by a blunt-pointed process in front of the tuberosity of the ischium, along the perineal surface of the conjoined (ischiopubic) ramus. Just before it meets its fellow it presents a slight enlargement, named by Georg Ludwig Kobelt (1804-1857) the bulb of the corpus cavernosum penis. Beyond this point the crus undergoes a constriction and merges into the corpus cavernosum proper, which retains a uniform diameter to its anterior end. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_penis ] ## Synonyms - * crus of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18248] - * crura of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_penis] - * crus penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * crus of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18248 ] + * crura of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_penis ] + * crus penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0006839.md b/md/UBERON/39/UBERON_0006839.md index 3a8190ab40..a8e3075016 100644 --- a/md/UBERON/39/UBERON_0006839.md +++ b/md/UBERON/39/UBERON_0006839.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006839 * *Label* = posterior ramus of spinal nerve - * *Definition* = The posterior (or dorsal) branches (or divisions) of the spinal nerves are as a rule smaller than the anterior divisions. They are also referred to as the dorsal rami. They are directed backward, and, with the exceptions of those of the first cervical, the fourth and fifth sacral, and the coccygeal, divide into medial and lateral branches for the supply of the muscles and skin of the posterior part of the trunk. Shortly after a spinal nerve exits the intervertebral foramen, it branches into the dorsal ramus, ventral ramus, and rami communicantes. Each of these latter three structures carries both sensory and motor information. Because each spinal nerve carries both sensory and motor information, spinal nerves are referred to as bmixed nerves. b Dorsal rami carry visceral motor, somatic motor, and sensory information to and from the skin and muscles of the back. Dorsal rami remain distinct from each other, and each innervates a narrow strip of skin and muscle along the back, more or less at the level from which the ramus leaves the spinal nerve. The smaller, posteriorly-directed major terminal branch (with the ventral primary ramus) of all 31 pairs of mixed spinal nerves, formed at the intervertebral foramen and turning abruptly posteriorly to divide into lateral and medial branches, both of which will supply the deep (true) muscles of the back. The medial branch (rami medialis) of the dorsal primary ramus also supplies articular branches to the zygopophyseal joints and the periosteum of the vertebral arch. In the neck and upper back, the medial branch continues through the deep and superficial back muscles to supply overlying skin; in the lower back, the lateral branch does this. Nomina Anatomica lists dorsal primary rami as 'rami dorsales' for each group of spinal nerves: 1) cervical (nervorum cervicalium), 2) thoracic (nervorum thoracicorum), 3) lumbar (nervorum lumbalium), 4) sacral (nervorum sacralium), and 5) coccygeal (nervi coccygei). Synonyms: ramus dorsalis nervorum spinalium, ramus dorsalis, rami posteriores nervorum spinalium, dorsal branch, posterior primary division. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ramus_of_spinal_nerve] + * *Definition* = The posterior (or dorsal) branches (or divisions) of the spinal nerves are as a rule smaller than the anterior divisions. They are also referred to as the dorsal rami. They are directed backward, and, with the exceptions of those of the first cervical, the fourth and fifth sacral, and the coccygeal, divide into medial and lateral branches for the supply of the muscles and skin of the posterior part of the trunk. Shortly after a spinal nerve exits the intervertebral foramen, it branches into the dorsal ramus, ventral ramus, and rami communicantes. Each of these latter three structures carries both sensory and motor information. Because each spinal nerve carries both sensory and motor information, spinal nerves are referred to as bmixed nerves. b Dorsal rami carry visceral motor, somatic motor, and sensory information to and from the skin and muscles of the back. Dorsal rami remain distinct from each other, and each innervates a narrow strip of skin and muscle along the back, more or less at the level from which the ramus leaves the spinal nerve. The smaller, posteriorly-directed major terminal branch (with the ventral primary ramus) of all 31 pairs of mixed spinal nerves, formed at the intervertebral foramen and turning abruptly posteriorly to divide into lateral and medial branches, both of which will supply the deep (true) muscles of the back. The medial branch (rami medialis) of the dorsal primary ramus also supplies articular branches to the zygopophyseal joints and the periosteum of the vertebral arch. In the neck and upper back, the medial branch continues through the deep and superficial back muscles to supply overlying skin; in the lower back, the lateral branch does this. Nomina Anatomica lists dorsal primary rami as 'rami dorsales' for each group of spinal nerves: 1) cervical (nervorum cervicalium), 2) thoracic (nervorum thoracicorum), 3) lumbar (nervorum lumbalium), 4) sacral (nervorum sacralium), and 5) coccygeal (nervi coccygei). Synonyms: ramus dorsalis nervorum spinalium, ramus dorsalis, rami posteriores nervorum spinalium, dorsal branch, posterior primary division. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ramus_of_spinal_nerve ] ## Synonyms - * dorsal ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5983] - * dorsal ramus of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5983] - * posterior primary ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5983] - * ramus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5983] - * ramus posterior nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_ramus_of_spinal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5983 ] + * dorsal ramus of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5983 ] + * posterior primary ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5983 ] + * ramus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5983 ] + * ramus posterior nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_ramus_of_spinal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A thin ramus which branches from the common trunk of the PLLN when it separates from the postotic ganglionic complex. It turns dorsally and extends over the trunk and dorsal fin innervating the dorsal line of neuromasts.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass posterior lateral line nerve (PLLN) (AAO:0010115)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0007239.md b/md/UBERON/39/UBERON_0007239.md index 6dfb5f5cfd..9f16b77d18 100644 --- a/md/UBERON/39/UBERON_0007239.md +++ b/md/UBERON/39/UBERON_0007239.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007239 * *Label* = tunica media of artery - * *Definition* = A tunica media that is part of a artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica media that is part of a artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arterial media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100029] - * tunica media (arteriae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14273] + * arterial media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100029 ] + * tunica media (arteriae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14273 ] ## Cross-references * EV:0100029 * FMA:14273 * SCTID:84300001 - * UMLS:C1710627 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venous_System_Smooth_Muscle_Tissue] + * UMLS:C1710627 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venous_System_Smooth_Muscle_Tissue ] * ncithesaurus:Venous_System_Smooth_Muscle_Tissue ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) and [tunica media](../../UBERON/22/UBERON_0002522.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0007639.md b/md/UBERON/39/UBERON_0007639.md index f465d3aa4c..510f37eb6e 100644 --- a/md/UBERON/39/UBERON_0007639.md +++ b/md/UBERON/39/UBERON_0007639.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007639 * *Label* = hippocampus alveus - * *Definition* = Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1510] + * *Definition* = Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1510 ] * *Comment* = todo - check xref: ncithesaurus:Alveus ## Synonyms - * alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1510] - * alveus of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83867] - * neuraxis alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83867] - * CA2 alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:186[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * alveus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] + * alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1510 ] + * alveus of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83867 ] + * neuraxis alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83867 ] + * CA2 alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:186, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * alveus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] ## Cross-references @@ -22,10 +22,10 @@ * BAMS:alv * FMA:83867 * NIF_GrossAnatomy:birnlex_1510 - * NeuroNames:186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1510] + * NeuroNames:186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1510 ] * SCTID:369094002 - * UMLS:C0228247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1510] - * UMLS:C0228247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveus] + * UMLS:C0228247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1510 ] + * UMLS:C0228247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveus ] * ncithesaurus:Alveus ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0008339.md b/md/UBERON/39/UBERON_0008339.md index 5791c2f12a..e900527863 100644 --- a/md/UBERON/39/UBERON_0008339.md +++ b/md/UBERON/39/UBERON_0008339.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0008439.md b/md/UBERON/39/UBERON_0008439.md index f5bfdfb316..2d29fbf1ad 100644 --- a/md/UBERON/39/UBERON_0008439.md +++ b/md/UBERON/39/UBERON_0008439.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008439 * *Label* = webbed interdigital region between pedal digits - * *Definition* = A webbed interdigital region that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A webbed interdigital region that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * toe web [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * toe web [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [webbed interdigital region](../../UBERON/15/UBERON_0006015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0008839.md b/md/UBERON/39/UBERON_0008839.md index bbf888e26f..88b1045b01 100644 --- a/md/UBERON/39/UBERON_0008839.md +++ b/md/UBERON/39/UBERON_0008839.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008839 * *Label* = palmar pad - * *Definition* = An autopod pad that is in the metacarpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An autopod pad that is in the metacarpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = note that the EMAPA term refers to the plural ## Synonyms @@ -11,7 +11,7 @@ * hind foot pad * metacarpal foot pad * metacarpal pad - * palmar pads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18489[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * palmar pads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18489, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metapodial pad](../../UBERON/38/UBERON_0008838.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpus region](../../UBERON/53/UBERON_0004453.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008839 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0008939.md b/md/UBERON/39/UBERON_0008939.md index 32361ff814..e3d7c2b5ac 100644 --- a/md/UBERON/39/UBERON_0008939.md +++ b/md/UBERON/39/UBERON_0008939.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008939 * *Label* = pedal ganglion - * *Definition* = The pedal ganglia mainly are necessary for coordination of locomotion of a snail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001012] + * *Definition* = The pedal ganglia mainly are necessary for coordination of locomotion of a snail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001012 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0009039.md b/md/UBERON/39/UBERON_0009039.md index 457cdd2a1b..519098a46e 100644 --- a/md/UBERON/39/UBERON_0009039.md +++ b/md/UBERON/39/UBERON_0009039.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009039 * *Label* = lymph node germinal center - * *Definition* = A germinal center that is located in a lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * *Definition* = A germinal center that is located in a lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Synonyms - * germinal center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003671] + * germinal center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003671 ] * lymph node activated zone * lymph node central zone * lymph node light zone @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [germinal center](../../UBERON/54/UBERON_0010754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0009139.md b/md/UBERON/39/UBERON_0009139.md index 005adecc45..d56c8c3f54 100644 --- a/md/UBERON/39/UBERON_0009139.md +++ b/md/UBERON/39/UBERON_0009139.md @@ -6,8 +6,8 @@ ## Synonyms - * posterior cardinal vein right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004536] - * right postcardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70315] + * posterior cardinal vein right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004536 ] + * right postcardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70315 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [posterior cardinal vein](../../UBERON/65/UBERON_0002065.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013123 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0009539.md b/md/UBERON/39/UBERON_0009539.md index 82d060f855..3c58eee82f 100644 --- a/md/UBERON/39/UBERON_0009539.md +++ b/md/UBERON/39/UBERON_0009539.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009539 * *Label* = mesenchyme of submandibular gland primordium - * *Definition* = Mesenchyme that is part of a submandibular gland primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a submandibular gland primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submandibular gland primordium](../../UBERON/98/UBERON_0006298.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0009639.md b/md/UBERON/39/UBERON_0009639.md index dd1c77ae1d..199a36f268 100644 --- a/md/UBERON/39/UBERON_0009639.md +++ b/md/UBERON/39/UBERON_0009639.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009639 * *Label* = body of sphenoid - * *Definition* = The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_sphenoid_bone] + * *Definition* = The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_sphenoid_bone ] ## Synonyms * Entire body of sphenoid bone - * body of sphenoidal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52867] - * central body of sphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52867] - * corpus (os sphenoidale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52867] - * sphenoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52867] - * corpus ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * body of sphenoidal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52867 ] + * central body of sphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52867 ] + * corpus (os sphenoidale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52867 ] + * sphenoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52867 ] + * corpus ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0009739.md b/md/UBERON/39/UBERON_0009739.md index b465875f54..8184250978 100644 --- a/md/UBERON/39/UBERON_0009739.md +++ b/md/UBERON/39/UBERON_0009739.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009739 * *Label* = border of sublaminar layers S3 and S4 - * *Definition* = The region extending out from the boundary between sublaminar layers S3 and S4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:plr[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The region extending out from the boundary between sublaminar layers S3 and S4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:plr, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -19,20 +19,21 @@ * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) * [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layers S3 or S4](../../UBERON/31/UBERON_0009731.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0010039.md b/md/UBERON/39/UBERON_0010039.md index a729eafce7..6be5c38d60 100644 --- a/md/UBERON/39/UBERON_0010039.md +++ b/md/UBERON/39/UBERON_0010039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010039 * *Label* = food storage organ - * *Definition* = An organ of the digestive tract that is capable of retaining and storing food [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organ of the digestive tract that is capable of retaining and storing food [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0010239.md b/md/UBERON/39/UBERON_0010239.md index 0cf2348c5e..a4aa1a6075 100644 --- a/md/UBERON/39/UBERON_0010239.md +++ b/md/UBERON/39/UBERON_0010239.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010239 * *Label* = spiral colon - * *Definition* = A variant of the ascending colon in ruminants and pigs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_colon] + * *Definition* = A variant of the ascending colon in ruminants and pigs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_colon ] * *Comment* = Editor notes: Consider merging with ascending colon ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references - * UMLS:C0227374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spiral_Colon] + * UMLS:C0227374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spiral_Colon ] * Wikipedia:Spiral_colon * ncithesaurus:Spiral_Colon @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0010339.md b/md/UBERON/39/UBERON_0010339.md index ac86a25bb1..00bdd644f9 100644 --- a/md/UBERON/39/UBERON_0010339.md +++ b/md/UBERON/39/UBERON_0010339.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010339 * *Label* = 1st arch mandibular mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mandibular mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch mandibular mesenchyme](../../UBERON/84/UBERON_0009584.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010339 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0010739.md b/md/UBERON/39/UBERON_0010739.md index eec0368e26..9ccc881be9 100644 --- a/md/UBERON/39/UBERON_0010739.md +++ b/md/UBERON/39/UBERON_0010739.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010739 * *Label* = distal carpal bone 5 - * *Definition* = endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] + * *Definition* = endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] * *Comment* = Taxon notes: lost in most reptiles and mammals[VSAO]. Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements[AAO] ## Synonyms - * distal carpal 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] - * carpal 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000851] - * hamate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] - * os hamatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] - * unciform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] - * uncinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005047] + * distal carpal 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] + * carpal 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000851 ] + * hamate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] + * os hamatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] + * unciform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] + * uncinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005047 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal bone 5 endochondral element](../../UBERON/96/UBERON_0015096.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0010939.md b/md/UBERON/39/UBERON_0010939.md index bdb5a491c5..966726f48c 100644 --- a/md/UBERON/39/UBERON_0010939.md +++ b/md/UBERON/39/UBERON_0010939.md @@ -6,9 +6,9 @@ ## Synonyms - * zygomaticomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * zygomaticomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] * zygomaticomandibularis muscle - * masseter, deep [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * masseter, deep [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The deep masseter is a separable part of the masseter muscle that attaches to lateral surface and/or ventral border of zygomatic arch.[FEED] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The zygomaticomandibularis is a separable part of the masseter muscle that attaches to the medial surface of the zygomatic arch.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0011139.md b/md/UBERON/39/UBERON_0011139.md index 08d80cc63c..494f5e0952 100644 --- a/md/UBERON/39/UBERON_0011139.md +++ b/md/UBERON/39/UBERON_0011139.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011139 * *Label* = synovial limb joint - * *Definition* = Any synovial joint that is part of a (free) limb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any synovial joint that is part of a (free) limb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses. ## Synonyms - * synovial joint of free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258776] + * synovial joint of free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258776 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) and [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0011639.md b/md/UBERON/39/UBERON_0011639.md index 57f0049d42..7a42e57fe7 100644 --- a/md/UBERON/39/UBERON_0011639.md +++ b/md/UBERON/39/UBERON_0011639.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011639 * *Label* = frontoparietal bone - * *Definition* = An anuran dermal bone that usually is paired and roofs the braincase. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] + * *Definition* = An anuran dermal bone that usually is paired and roofs the braincase. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] ## Synonyms - * frontoparietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] - * fronto-parietaux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] - * os fronto-parietale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] - * parietaux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] - * parietofrontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000207] + * frontoparietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] + * fronto-parietaux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] + * os fronto-parietale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] + * parietaux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] + * parietofrontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000207 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0011939.md b/md/UBERON/39/UBERON_0011939.md index 51609902a5..cad0d5c759 100644 --- a/md/UBERON/39/UBERON_0011939.md +++ b/md/UBERON/39/UBERON_0011939.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011939 * *Label* = vibrissa outer root sheath - * *Definition* = A hair outer root sheath that is part of a vibrissa unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hair outer root sheath that is part of a vibrissa unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hair outer root sheath](../../UBERON/42/UBERON_0005942.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa unit](../../UBERON/33/UBERON_0011933.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0012139.md b/md/UBERON/39/UBERON_0012139.md index 28c9abd677..fa3dd5c532 100644 --- a/md/UBERON/39/UBERON_0012139.md +++ b/md/UBERON/39/UBERON_0012139.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0012239.md b/md/UBERON/39/UBERON_0012239.md index 7e836f8bd5..b7c5c9692d 100644 --- a/md/UBERON/39/UBERON_0012239.md +++ b/md/UBERON/39/UBERON_0012239.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012239 * *Label* = urinary bladder vasculature - * *Definition* = network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = network of tubes that carries blood through the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms * bladder vasculature - * blood vessels of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28679] + * blood vessels of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28679 ] * set of urinary bladder blood vessels ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0012439.md b/md/UBERON/39/UBERON_0012439.md index 507da66c69..3dd2774e27 100644 --- a/md/UBERON/39/UBERON_0012439.md +++ b/md/UBERON/39/UBERON_0012439.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blastema](../../UBERON/06/UBERON_0005306.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal segment of digit](../../UBERON/51/UBERON_0009551.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0013139.md b/md/UBERON/39/UBERON_0013139.md index e65f499b84..6d28dbf1d9 100644 --- a/md/UBERON/39/UBERON_0013139.md +++ b/md/UBERON/39/UBERON_0013139.md @@ -6,14 +6,14 @@ ## Synonyms - * hepatic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15820] + * hepatic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15820 ] * liver ligament ## Cross-references * FMA:15820 * SCTID:48536008 - * UMLS:C0230238 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Liver_Ligament] + * UMLS:C0230238 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Liver_Ligament ] * ncithesaurus:Liver_Ligament ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nonskeletal ligament](../../UBERON/45/UBERON_0008845.md) and [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013139 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0013239.md b/md/UBERON/39/UBERON_0013239.md index 17c0a02430..cc0d87bc87 100644 --- a/md/UBERON/39/UBERON_0013239.md +++ b/md/UBERON/39/UBERON_0013239.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [future glans](../../UBERON/38/UBERON_0013238.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male genital tubercle](../../UBERON/61/UBERON_0006261.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013239 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0013539.md b/md/UBERON/39/UBERON_0013539.md index 3652a13eb8..99e8196d00 100644 --- a/md/UBERON/39/UBERON_0013539.md +++ b/md/UBERON/39/UBERON_0013539.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013539 * *Label* = Brodmann (1909) area 8 - * *Definition* = Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_8] + * *Definition* = Brodmann area 8 is one of Brodmann's cytologically defined regions of the brain. It is involved in planning complex movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_8 ] ## Synonyms - * B09-8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1739] - * Brodmann (1909) area 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1739] - * Brodmann area 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68605] - * Brodmann area 8, intermediate frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1739] - * Intermediate frontal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68605] - * area 8 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68605] - * area 8 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1739] - * area frontalis intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1739] - * area frontalis intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_8[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1739[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 8 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1034] - * brodmann's area 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1034] + * B09-8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1739 ] + * Brodmann (1909) area 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1739 ] + * Brodmann area 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68605 ] + * Brodmann area 8, intermediate frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1739 ] + * Intermediate frontal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68605 ] + * area 8 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68605 ] + * area 8 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1739 ] + * area frontalis intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1739 ] + * area frontalis intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_8, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1739, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 8 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1034 ] + * brodmann's area 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1034 ] ## Cross-references * FMA:68605 * NIF_GrossAnatomy:birnlex_1739 - * NeuroNames:1034 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1739] - * UMLS:C1272530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1739] + * NeuroNames:1034 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1739 ] + * UMLS:C1272530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1739 ] * Wikipedia:Brodmann_area_8 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0013639.md b/md/UBERON/39/UBERON_0013639.md index 43e38fd6ef..7b54c053f7 100644 --- a/md/UBERON/39/UBERON_0013639.md +++ b/md/UBERON/39/UBERON_0013639.md @@ -7,7 +7,7 @@ ## Synonyms * mechanical papilla - * mechanical papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mechanical papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0013739.md b/md/UBERON/39/UBERON_0013739.md index cfb7bef58c..2f68d22a80 100644 --- a/md/UBERON/39/UBERON_0013739.md +++ b/md/UBERON/39/UBERON_0013739.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013739 * *Label* = base of crypt of lieberkuhn - * *Definition* = The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:md] + * *Definition* = The basal portion (further from lumen) of an intestinal crypt. Contains multipotent stem cells. Stem cells in the crypts divide to form daughter cells. One daughter cell from each stem cell division is retained as a stem cell. The other becomes committed to differentiate along one of four pathways to become an enterocyte, enteroendocrine cell, goblet cell or Paneth cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:md ] * *Comment* = Taxon notes: Clearly defined prolifieration zones found in mammals. Not observed in agnathostomes, larval amphibians. Described in advanced species of fish and adult amphibians. [ISBN:9780521617147] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [wall of crypt of lieberkuhn](../../UBERON/40/UBERON_0013740.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013739 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0014439.md b/md/UBERON/39/UBERON_0014439.md index 2ce5ff9660..32b63707b3 100644 --- a/md/UBERON/39/UBERON_0014439.md +++ b/md/UBERON/39/UBERON_0014439.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014439 * *Label* = inferior pubic ramus - * *Definition* = The inferior pubic ramus is thin and flattened. It passes lateralward and downward from the medial end of the superior ramus; it becomes narrower as it descends and joins with the inferior ramus of the ischium below the obturator foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pubic_ramus] + * *Definition* = The inferior pubic ramus is thin and flattened. It passes lateralward and downward from the medial end of the superior ramus; it becomes narrower as it descends and joins with the inferior ramus of the ischium below the obturator foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pubic_ramus ] ## Synonyms - * inferior ramus of pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16989] - * inferior rami of the pubes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pubic_ramus] - * inferior ramus of the pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pubic_ramus] + * inferior ramus of pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16989 ] + * inferior rami of the pubes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pubic_ramus ] + * inferior ramus of the pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pubic_ramus ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014439 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0014539.md b/md/UBERON/39/UBERON_0014539.md index 11550fa380..101eace3fd 100644 --- a/md/UBERON/39/UBERON_0014539.md +++ b/md/UBERON/39/UBERON_0014539.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014539 * *Label* = precommissural fornix of forebrain - * *Definition* = Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1033] + * *Definition* = Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1033 ] ## Synonyms - * precommissural fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1033] - * Preculminate fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:pcf] - * fasciculus proprius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:fpr] + * precommissural fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1033 ] + * Preculminate fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:pcf ] + * fasciculus proprius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:fpr ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:61967 * NIF_GrossAnatomy:birnlex_1033 * NeuroNames:270 - * UMLS:C0175237 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1033] + * UMLS:C0175237 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1033 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014539 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0014639.md b/md/UBERON/39/UBERON_0014639.md index 25ee0ae810..f2865f18a6 100644 --- a/md/UBERON/39/UBERON_0014639.md +++ b/md/UBERON/39/UBERON_0014639.md @@ -9,7 +9,7 @@ ## Cross-references - * UMLS:C0459388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Sulcus] + * UMLS:C0459388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Sulcus ] * ncithesaurus:Frontal_Sulcus ## Subsets @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [frontal cortex](../../UBERON/70/UBERON_0001870.md) and [sulcus](../../UBERON/93/UBERON_0000093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014639 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_0015039.md b/md/UBERON/39/UBERON_0015039.md index e0510ee95f..97a807fd2c 100644 --- a/md/UBERON/39/UBERON_0015039.md +++ b/md/UBERON/39/UBERON_0015039.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015039 * *Label* = pedal digit 3 metatarsal endochondral element - * *Definition* = A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 3 metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 3 metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 3 metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 3 metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [metatarsal bone of digit 3](../../UBERON/52/UBERON_0003652.md)or[pedal digit 3 metatarsal cartilage element](../../UBERON/59/UBERON_0010559.md)or[pedal digit 3 metatarsal pre-cartilage condensation](../../UBERON/49/UBERON_0010549.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015039 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000039.md b/md/UBERON/39/UBERON_2000039.md index 834ad0896b..2126d09f69 100644 --- a/md/UBERON/39/UBERON_2000039.md +++ b/md/UBERON/39/UBERON_2000039.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000139.md b/md/UBERON/39/UBERON_2000139.md index 534b298f1c..91204707ed 100644 --- a/md/UBERON/39/UBERON_2000139.md +++ b/md/UBERON/39/UBERON_2000139.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000139 * *Label* = immature otolith - * *Definition* = Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * immature otoliths [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000139[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * immature otoliths [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000139, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000239.md b/md/UBERON/39/UBERON_2000239.md index cbb42144b3..aebb3dfbf5 100644 --- a/md/UBERON/39/UBERON_2000239.md +++ b/md/UBERON/39/UBERON_2000239.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000239 * *Label* = mesocoracoid bone - * *Definition* = Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * mesocoracoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000239] + * mesocoracoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000239 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000439.md b/md/UBERON/39/UBERON_2000439.md index 8c506ed98a..eeb9b1f3a5 100644 --- a/md/UBERON/39/UBERON_2000439.md +++ b/md/UBERON/39/UBERON_2000439.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000639.md b/md/UBERON/39/UBERON_2000639.md index a284d5f196..d07ac7e913 100644 --- a/md/UBERON/39/UBERON_2000639.md +++ b/md/UBERON/39/UBERON_2000639.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000739.md b/md/UBERON/39/UBERON_2000739.md index 8f8e242f4e..be3b71ec30 100644 --- a/md/UBERON/39/UBERON_2000739.md +++ b/md/UBERON/39/UBERON_2000739.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000739 * *Label* = epaxial region somite 11 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000839.md b/md/UBERON/39/UBERON_2000839.md index f13da32291..78e7042cd7 100644 --- a/md/UBERON/39/UBERON_2000839.md +++ b/md/UBERON/39/UBERON_2000839.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000839 * *Label* = sclerotome somite 9 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2000939.md b/md/UBERON/39/UBERON_2000939.md index 762d499da5..5ea9ac8980 100644 --- a/md/UBERON/39/UBERON_2000939.md +++ b/md/UBERON/39/UBERON_2000939.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000939 * *Label* = middle lateral line neuromast - * *Definition* = Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast middle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000939] - * neuromasts middle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000939[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neuromast middle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000939 ] + * neuromasts middle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000939, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromast](../../UBERON/04/UBERON_0008904.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle lateral line](../../UBERON/96/UBERON_0003096.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2000939 + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001039.md b/md/UBERON/39/UBERON_2001039.md index 892cb98067..7da138922b 100644 --- a/md/UBERON/39/UBERON_2001039.md +++ b/md/UBERON/39/UBERON_2001039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001039 * *Label* = sclerotome somite 19 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001139.md b/md/UBERON/39/UBERON_2001139.md index a67be15a4c..5af56faa71 100644 --- a/md/UBERON/39/UBERON_2001139.md +++ b/md/UBERON/39/UBERON_2001139.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001139 * *Label* = mediodorsal tooth row - * *Definition* = Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001239.md b/md/UBERON/39/UBERON_2001239.md index a779c69db4..f77dddb249 100644 --- a/md/UBERON/39/UBERON_2001239.md +++ b/md/UBERON/39/UBERON_2001239.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001239 * *Label* = ceratobranchial 5 bone - * *Definition* = Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Synonym 'lower pharyngeal' from Weitzman, 1962. Synonym 'inferior pharyngeal bone' from Saxena, S.C. (1960). The cranial musculature of a hill-stream cyprinid fish Garra mullya (Sykes). Proceedings of the National Institute of Science in India. 26B(4): 176-188. Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone musculature of the carp, Cyprinus carpio. Journal of Morphology. 134(2): 131-140. ## Synonyms - * inferior pharyngeal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001239] - * lower pharyngeal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001239] + * inferior pharyngeal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001239 ] + * lower pharyngeal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001239 ] ## Cross-references @@ -36,7 +36,9 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone muscula * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001339.md b/md/UBERON/39/UBERON_2001339.md index afbc7cb8d2..3bc0340b62 100644 --- a/md/UBERON/39/UBERON_2001339.md +++ b/md/UBERON/39/UBERON_2001339.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001339 * *Label* = obsolete nucleus of the tract of the anterior commissure - * *Definition* = Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ntAC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001339] + * ntAC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001339 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/39/UBERON_2001539.md b/md/UBERON/39/UBERON_2001539.md index e1a84a60fb..c002503283 100644 --- a/md/UBERON/39/UBERON_2001539.md +++ b/md/UBERON/39/UBERON_2001539.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001539 * *Label* = basipterygium cartilage - * *Definition* = Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basipterygium element](../../UBERON/23/UBERON_2100623.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001739.md b/md/UBERON/39/UBERON_2001739.md index 8ca5b42445..3fd4539c79 100644 --- a/md/UBERON/39/UBERON_2001739.md +++ b/md/UBERON/39/UBERON_2001739.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001739 * *Label* = anterior cranial fontanel - * *Definition* = Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * frontal fontanel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001739] - * frontal fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001739] - * anterior fontanel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001739] + * frontal fontanel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001739 ] + * frontal fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001739 ] + * anterior fontanel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001739 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2001939.md b/md/UBERON/39/UBERON_2001939.md index 20b7c36805..46e534055d 100644 --- a/md/UBERON/39/UBERON_2001939.md +++ b/md/UBERON/39/UBERON_2001939.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001939 * *Label* = inter-basipterygium joint - * *Definition* = Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pelvic girdle symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001939] - * pelvic symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001939] + * pelvic girdle symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001939 ] + * pelvic symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001939 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [basipterygium bone](../../UBERON/23/UBERON_2000623.md) and [core#connects](../../ts/core#connects.md) some [basipterygium cartilage](../../UBERON/39/UBERON_2001539.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2002039.md b/md/UBERON/39/UBERON_2002039.md index 4940c12296..3892a4fc3b 100644 --- a/md/UBERON/39/UBERON_2002039.md +++ b/md/UBERON/39/UBERON_2002039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002039 * *Label* = dilatator fossa - * *Definition* = Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Dilatator fossa is present in some characiform fishes. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2005039.md b/md/UBERON/39/UBERON_2005039.md index 782186efbc..af3606f0ae 100644 --- a/md/UBERON/39/UBERON_2005039.md +++ b/md/UBERON/39/UBERON_2005039.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_2005239.md b/md/UBERON/39/UBERON_2005239.md index 54263a0baf..51b07b98b8 100644 --- a/md/UBERON/39/UBERON_2005239.md +++ b/md/UBERON/39/UBERON_2005239.md @@ -7,7 +7,7 @@ ## Synonyms - * plug cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005239] + * plug cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005239 ] ## Cross-references @@ -28,8 +28,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/39/UBERON_2005339.md b/md/UBERON/39/UBERON_2005339.md index 32a9b674ea..49912cc316 100644 --- a/md/UBERON/39/UBERON_2005339.md +++ b/md/UBERON/39/UBERON_2005339.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3000539.md b/md/UBERON/39/UBERON_3000539.md index 943e614395..b3509ffa67 100644 --- a/md/UBERON/39/UBERON_3000539.md +++ b/md/UBERON/39/UBERON_3000539.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3000639.md b/md/UBERON/39/UBERON_3000639.md index 70eae78e7c..03bda9ec0c 100644 --- a/md/UBERON/39/UBERON_3000639.md +++ b/md/UBERON/39/UBERON_3000639.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000639 * *Label* = zygomatic ramus of squamosal - * *Definition* = Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3000839.md b/md/UBERON/39/UBERON_3000839.md index 20b8fdcce3..9543bb28cf 100644 --- a/md/UBERON/39/UBERON_3000839.md +++ b/md/UBERON/39/UBERON_3000839.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000839 * *Label* = crista radii - * *Definition* = Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3010039.md b/md/UBERON/39/UBERON_3010039.md index 52d09b9745..e3d4361fcf 100644 --- a/md/UBERON/39/UBERON_3010039.md +++ b/md/UBERON/39/UBERON_3010039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010039 * *Label* = protandrous hermaphroditic organism - * *Definition* = Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Sequential hermaphroditic organism that produces gametes first of the male sex, and then later of the female sex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3010239.md b/md/UBERON/39/UBERON_3010239.md index 63b77a41b2..0630d8b74b 100644 --- a/md/UBERON/39/UBERON_3010239.md +++ b/md/UBERON/39/UBERON_3010239.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_3010739.md b/md/UBERON/39/UBERON_3010739.md index a8d00f1a19..bbcd51d65e 100644 --- a/md/UBERON/39/UBERON_3010739.md +++ b/md/UBERON/39/UBERON_3010739.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010739 * *Label* = M. flexor antibrachii medialis - * *Definition* = Originates on the medial epicondyle of the humerus and inserts on the radial aspect of the radioulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the medial epicondyle of the humerus and inserts on the radial aspect of the radioulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_4000039.md b/md/UBERON/39/UBERON_4000039.md index ed5c9326b3..d957fd6672 100644 --- a/md/UBERON/39/UBERON_4000039.md +++ b/md/UBERON/39/UBERON_4000039.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000039 * *Label* = obsolete chordoblast - * *Definition* = Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007008 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/39/UBERON_4200039.md b/md/UBERON/39/UBERON_4200039.md index 1a578f657a..e3d7574856 100644 --- a/md/UBERON/39/UBERON_4200039.md +++ b/md/UBERON/39/UBERON_4200039.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/39/UBERON_4200139.md b/md/UBERON/39/UBERON_4200139.md index 6fb711c43a..8aa14aba18 100644 --- a/md/UBERON/39/UBERON_4200139.md +++ b/md/UBERON/39/UBERON_4200139.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = D. B. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0000040.md b/md/UBERON/40/UBERON_0000040.md index 89179dd001..061eb77477 100644 --- a/md/UBERON/40/UBERON_0000040.md +++ b/md/UBERON/40/UBERON_0000040.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000040 * *Label* = Leydig's organ - * *Definition* = A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Leydig's_organ[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.elasmo-research.org/education/topics/p_blood_cells.htm] + * *Definition* = A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Leydig's_organ, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.elasmo-research.org/education/topics/p_blood_cells.htm ] * *Comment* = Taxon notes: Found in elasmobranchs (sharks and rays) but with some exceptions. Phenotype notes: Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus). Structure notes: divided into dorsal and ventral patches, gradation varies between species. Lacks erythroblasts and fat cells[Honma 1983] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0000440.md b/md/UBERON/40/UBERON_0000440.md index 4163f483e3..fac7a1e868 100644 --- a/md/UBERON/40/UBERON_0000440.md +++ b/md/UBERON/40/UBERON_0000440.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000440 * *Label* = trabecula - * *Definition* = A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060343[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecula] + * *Definition* = A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060343, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecula ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = trabecular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001040.md b/md/UBERON/40/UBERON_0001040.md index 1ff82d56e2..1b441775f1 100644 --- a/md/UBERON/40/UBERON_0001040.md +++ b/md/UBERON/40/UBERON_0001040.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001040 * *Label* = yolk sac - * *Definition* = Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Yolk_sac] + * *Definition* = Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Yolk_sac ] * *Comment* = Taxon notes: In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN10:0073040584 "Vertebrates, Kardong"] ## Synonyms - * saccus vitellinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Yolk_sac[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesicula umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Yolk_sac[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * saccus vitellinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Yolk_sac, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesicula umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Yolk_sac, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * GAID:1301 * MESH:A16.254.403.981 * SCTID:362845002 - * UMLS:C0043425 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Yolk_Sac] + * UMLS:C0043425 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Yolk_Sac ] * VHOG:0000830 * Wikipedia:Yolk_sac * http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the extraembryonic fetal membranes that balloons out from the fetal midgut. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001140.md b/md/UBERON/40/UBERON_0001140.md index 1f82a2230a..8e0813b0ca 100644 --- a/md/UBERON/40/UBERON_0001140.md +++ b/md/UBERON/40/UBERON_0001140.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001140 * *Label* = renal vein - * *Definition* = Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-683-40008-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011323] + * *Definition* = Either of the pair of major vessels which arise from the renal hilus and return blood from the kidneys, suprarenal gland and the ureter to the inferior vena cava. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-683-40008-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011323 ] * *Comment* = AO notes: in EHDAA2, the renal vein is part of the kidney ## Synonyms - * kidney vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * kidney vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * renal venous tree - * vein of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * venae renales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vein of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * venae renales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A07.231.908.752 * OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA * SCTID:116358006 - * UMLS:C0035092 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Vein] + * UMLS:C0035092 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Vein ] * Wikipedia:Renal_vein * galen:RenalVein * http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [kidney](../../UBERON/13/UBERON_0002113.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted][Wikipedia:Renal_vein]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001240.md b/md/UBERON/40/UBERON_0001240.md index aaabe30700..fcf43ffe92 100644 --- a/md/UBERON/40/UBERON_0001240.md +++ b/md/UBERON/40/UBERON_0001240.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001240 * *Label* = muscularis mucosae of intestine - * *Definition* = A muscularis mucosa that is part of a intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001340.md b/md/UBERON/40/UBERON_0001340.md index 054b4ae975..1ae302f555 100644 --- a/md/UBERON/40/UBERON_0001340.md +++ b/md/UBERON/40/UBERON_0001340.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001340 * *Label* = dorsal artery of penis - * *Definition* = The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_artery_of_penis] + * *Definition* = The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_artery_of_penis ] ## Synonyms - * arteria dorsalis penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005088] - * dorsal penile artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19795] - * dorsal penis artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001946] - * dorsal artery of the penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005088] + * arteria dorsalis penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005088 ] + * dorsal penile artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19795 ] + * dorsal penis artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001946 ] + * dorsal artery of the penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005088 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001440.md b/md/UBERON/40/UBERON_0001440.md index f69b2df7e9..00dde8a59f 100644 --- a/md/UBERON/40/UBERON_0001440.md +++ b/md/UBERON/40/UBERON_0001440.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001440 * *Label* = forelimb skeleton - * *Definition* = The collection of all skeletal elements in a free forelimb region. Excludes the pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a free forelimb region. Excludes the pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = TODO - find a home for: FMA:24139 ## Synonyms * bones of upper limb * fore limb skeleton - * forelimb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001256] - * free upper limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24142] - * ossa membri superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24139[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * forelimb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001256 ] + * free upper limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24142 ] + * ossa membri superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24139, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pectoral limb skeleton * set of bones of upper limb * skeleton of forelimb - * skeleton of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24142] + * skeleton of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24142 ] * skeleton of pectoral limb - * skeleton of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24139] - * upper limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002222] - * wing skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * skeleton of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24139 ] + * upper limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002222 ] + * wing skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001540.md b/md/UBERON/40/UBERON_0001540.md index bb3a80afee..ba73a9538c 100644 --- a/md/UBERON/40/UBERON_0001540.md +++ b/md/UBERON/40/UBERON_0001540.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001540 * *Label* = peroneal artery - * *Definition* = In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneal_artery] + * *Definition* = In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria fibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43921[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria fibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43921, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fibular artery ## Cross-references @@ -17,7 +17,7 @@ * MA:0002018 * OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA * SCTID:181359009 - * UMLS:C0226476 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peroneal_Artery] + * UMLS:C0226476 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peroneal_Artery ] * Wikipedia:Peroneal_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Fibular_artery.png/200px-Fibular_artery.png * ncithesaurus:Peroneal_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001640.md b/md/UBERON/40/UBERON_0001640.md index 610ae86dee..b57fa48268 100644 --- a/md/UBERON/40/UBERON_0001640.md +++ b/md/UBERON/40/UBERON_0001640.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001640 * *Label* = celiac artery - * *Definition* = The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] + * *Definition* = The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] * *Comment* = dorsal aorta in Kardong ## Synonyms * celiac tree - * coeliac artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * arteria coeliaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria cliaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * coeliac axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * coeliac trunck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * coeliac trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * truncus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * truncus coeliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery] - * truncus cliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coeliac artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * arteria coeliaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria cliaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * coeliac axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * coeliac trunck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * coeliac trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * truncus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery ] + * truncus coeliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * truncus cliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0001931 * MESH:A07.231.114.207 * SCTID:181340007 - * UMLS:C0007569 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coeliac_Artery] + * UMLS:C0007569 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coeliac_Artery ] * Wikipedia:Celiac_artery * http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001740.md b/md/UBERON/40/UBERON_0001740.md index 95f1c41e00..b8ee0a4143 100644 --- a/md/UBERON/40/UBERON_0001740.md +++ b/md/UBERON/40/UBERON_0001740.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001740 * *Label* = arytenoid cartilage - * *Definition* = The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_cartilage] + * *Definition* = The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_cartilage ] ## Synonyms - * arytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18695] - * arytenoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_cartilage] - * cartilagines arytenoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilago arytaenoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000674] + * arytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18695 ] + * arytenoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_cartilage ] + * cartilagines arytenoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cartilago arytaenoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000674 ] * cartilago arytenoidea ## Cross-references @@ -23,7 +23,7 @@ * MA:0001759 * MESH:A02.165.507.083 * SCTID:264446005 - * UMLS:C0003943 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arytenoid_Cartilage] + * UMLS:C0003943 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arytenoid_Cartilage ] * Wikipedia:Arytenoid_cartilage * http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001840.md b/md/UBERON/40/UBERON_0001840.md index 71a376c0d9..ca6c8e5bea 100644 --- a/md/UBERON/40/UBERON_0001840.md +++ b/md/UBERON/40/UBERON_0001840.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001840 * *Label* = semicircular canal - * *Definition* = One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations[ZFIN]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semicircular_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations[ZFIN]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semicircular_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Note that MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal ## Synonyms - * semicircular canals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000431[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * canalis semicircularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semicircular_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ductus semicirculares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003383[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71880[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * scc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000431] + * semicircular canals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000431, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * canalis semicircularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semicircular_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ductus semicirculares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003383, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71880, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * scc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000431 ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A09.246.631.663 * SCTID:279757004 * TAO:0000431 - * UMLS:C0036622 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semicircular_Canal] + * UMLS:C0036622 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semicircular_Canal ] * VHOG:0001144 * Wikipedia:Semicircular_canal * XAO:0000198 @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. These ducts are sometimes called canals, but technically the term semicircular canal applies to the spaces in the osseus labyrinth in which the semicircular ducts lie.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0001940.md b/md/UBERON/40/UBERON_0001940.md index 6dbee92542..5230facd8c 100644 --- a/md/UBERON/40/UBERON_0001940.md +++ b/md/UBERON/40/UBERON_0001940.md @@ -7,10 +7,10 @@ ## Synonyms - * SuM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1479[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei premamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus premamillaris hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * premamillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:418] + * SuM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1479, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei premamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus premamillaris hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * premamillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:418 ] ## Cross-references @@ -20,10 +20,10 @@ * FMA:62347 * MA:0000852 * NIF_GrossAnatomy:birnlex_1479 - * NeuroNames:418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1479] + * NeuroNames:418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1479 ] * SCTID:369144001 - * UMLS:C0228378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1479] - * UMLS:C1289571 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1479] + * UMLS:C0228378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1479 ] + * UMLS:C1289571 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1479 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002040.md b/md/UBERON/40/UBERON_0002040.md index cf74935731..982522741d 100644 --- a/md/UBERON/40/UBERON_0002040.md +++ b/md/UBERON/40/UBERON_0002040.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002040 * *Label* = bronchial artery - * *Definition* = In human anatomy, the bronchial arteries help supply the lungs with oxygenated blood. Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchial_artery] + * *Definition* = In human anatomy, the bronchial arteries help supply the lungs with oxygenated blood. Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * bronchial arterial tree - * arteriae bronchiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rami bronchiales partis thoracicae aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae bronchiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rami bronchiales partis thoracicae aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.158 * OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg * SCTID:244247009 - * UMLS:C0006257 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchial_Artery] + * UMLS:C0006257 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchial_Artery ] * Wikipedia:Bronchial_artery * http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray1032.png/200px-Gray1032.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002140.md b/md/UBERON/40/UBERON_0002140.md index 411e85ef09..225c873c11 100644 --- a/md/UBERON/40/UBERON_0002140.md +++ b/md/UBERON/40/UBERON_0002140.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002140 * *Label* = parabigeminal nucleus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Nucleus_Isthmii.2FParabigeminalis] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Nucleus_Isthmii.2FParabigeminalis ] * *Comment* = AO notes: in MA this is part of the tegmentum/brainstem ## Synonyms - * nucleus parabigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=482] - * corpus parabigeminum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:482[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus isthmi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001701] - * parabigeminal nucleus (Bechterew) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:482] - * parageminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PBG] + * nucleus parabigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=482 ] + * corpus parabigeminum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:482, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus isthmi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001701 ] + * parabigeminal nucleus (Bechterew) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:482 ] + * parageminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PBG ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:72415 * MA:0001074 * NIF_GrossAnatomy:birnlex_1007 - * NeuroNames:482 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1007] - * UMLS:C0262301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1007] + * NeuroNames:482 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1007 ] + * UMLS:C0262301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1007 ] * VHOG:0001701 * Wikipedia:Superior_colliculus#Nucleus_Isthmii.2FParabigeminalis @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Nucleus isthmi is present in the isthmus in most vertebrates. It is called the parabigeminal nucleus in mammals (reference 1); In sum, our results show that the origin of neurons of some tegmental hindbrain nuclei, namely, nucleus isthmi/superior reticular nucleus and secondary gustatory/viscerosensory nucleus is in the URL (upper rhombic lip), and that the temporal order of cell types produced by the URL and their developmental program are conserved among vertebrate species (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002240.md b/md/UBERON/40/UBERON_0002240.md index cdefeeed9f..969f28c2ce 100644 --- a/md/UBERON/40/UBERON_0002240.md +++ b/md/UBERON/40/UBERON_0002240.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002240 * *Label* = spinal cord - * *Definition* = Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1709] + * *Definition* = Part of the central nervous system located in the vertebral canal continuous with and caudal to the brain; demarcated from brain by plane of foramen magnum. It is composed of an inner core of gray matter in which nerve cells predominate, and an outer layer of white matter in which myelinated nerve fibers predominate, and surrounds the central canal. (CUMBO) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1709 ] * *Comment* = TODO: add superclass to unify with VNC? ## Synonyms - * cerebro-cerebellar fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:22] - * cerebrocerebellar fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:22] - * fissura cerebro-cerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:22[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fissura cerebrocerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:22[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medulla spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001279] - * medulla spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinal cord structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000075] - * spinal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001279] + * cerebro-cerebellar fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:22 ] + * cerebrocerebellar fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:22 ] + * fissura cerebro-cerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:22, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fissura cerebrocerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:22, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medulla spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001279 ] + * medulla spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinal cord structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000075 ] + * spinal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001279 ] ## Cross-references @@ -38,12 +38,12 @@ * MESH:A08.186.854 * MIAA:0000183 * NIF_GrossAnatomy:birnlex_1709 - * NeuroNames:22 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1709] + * NeuroNames:22 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1709 ] * OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA * SCTID:180959008 * TAO:0000075 - * UMLS:C0037925 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1709] - * UMLS:C0037925 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord] + * UMLS:C0037925 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1709 ] + * UMLS:C0037925 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord ] * VHOG:0000601 * Wikipedia:Spinal_cord * XAO:0000020 @@ -84,8 +84,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002340.md b/md/UBERON/40/UBERON_0002340.md index 30d05f704d..2cd6296771 100644 --- a/md/UBERON/40/UBERON_0002340.md +++ b/md/UBERON/40/UBERON_0002340.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002340 * *Label* = epithelium of main bronchus - * *Definition* = An epithelium that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchus principalis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * main bronchial epithelium - * main bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * main bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * main bronchus epithelium - * primary bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * primary bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003245 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002440.md b/md/UBERON/40/UBERON_0002440.md index 98f6f2dee7..034b742b43 100644 --- a/md/UBERON/40/UBERON_0002440.md +++ b/md/UBERON/40/UBERON_0002440.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002440 * *Label* = inferior cervical ganglion - * *Definition* = The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cervical_ganglion] + * *Definition* = The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cervical_ganglion ] ## Synonyms * variant cervical ganglion - * cervico-thoracic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18439] - * ganglion cervicale inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000240] - * ganglion cervicale inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cervical_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stellate ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001154] + * cervico-thoracic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18439 ] + * ganglion cervicale inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000240 ] + * ganglion cervicale inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cervical_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stellate ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001154 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001154 * RETIRED_EHDAA2:0000815 * SCTID:279280008 - * UMLS:C0229000 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Cervical_Ganglion] + * UMLS:C0229000 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Cervical_Ganglion ] * Wikipedia:Inferior_cervical_ganglion * http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002540.md b/md/UBERON/40/UBERON_0002540.md index 023be0d43d..216a0e6152 100644 --- a/md/UBERON/40/UBERON_0002540.md +++ b/md/UBERON/40/UBERON_0002540.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002540 * *Label* = lateral line system - * *Definition* = a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_line_system] + * *Definition* = a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_line_system ] ## Synonyms - * lateral line organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001243] + * lateral line organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001243 ] * lateral line stitches * lateral-line organs * ll @@ -49,8 +49,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: is_formed_by lateral line receptor organ (AAO:0001001)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002640.md b/md/UBERON/40/UBERON_0002640.md index 97a271a56e..96dddeaf61 100644 --- a/md/UBERON/40/UBERON_0002640.md +++ b/md/UBERON/40/UBERON_0002640.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002640 * *Label* = cuneocerebellar tract - * *Definition* = The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneocerebellar_tract] + * *Definition* = The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneocerebellar_tract ] ## Synonyms - * cuneocerebellar fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1238] - * tractus cuneocerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:803[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cuneocerebellar fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1238 ] + * tractus cuneocerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:803, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,8 +16,8 @@ * BAMS:cct * FMA:72637 * NIF_GrossAnatomy:birnlex_1238 - * NeuroNames:803 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1238] - * UMLS:C0175556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1238] + * NeuroNames:803 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1238 ] + * UMLS:C0175556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1238 ] * Wikipedia:Cuneocerebellar_tract * http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px-Gray699.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002740.md b/md/UBERON/40/UBERON_0002740.md index 49e6aeaf5b..cce711e925 100644 --- a/md/UBERON/40/UBERON_0002740.md +++ b/md/UBERON/40/UBERON_0002740.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002740 * *Label* = posterior cingulate gyrus - * *Definition* = The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cingulate_gyrus] + * *Definition* = The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cingulate_gyrus ] ## Synonyms - * PCgG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1546[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * gyrus cinguli posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:162[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus limbicus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:162[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:162] + * PCgG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1546, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * gyrus cinguli posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:162, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus limbicus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:162, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:162 ] ## Cross-references * BAMS:PCgG * FMA:61924 * NIF_GrossAnatomy:birnlex_1546 - * NeuroNames:162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1546] - * UMLS:C0175191 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1546] + * NeuroNames:162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1546 ] + * UMLS:C0175191 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1546 ] * Wikipedia:Posterior_cingulate_gyrus * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002840.md b/md/UBERON/40/UBERON_0002840.md index 91c068269f..004502f7cb 100644 --- a/md/UBERON/40/UBERON_0002840.md +++ b/md/UBERON/40/UBERON_0002840.md @@ -6,15 +6,15 @@ ## Synonyms - * third cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6316] - * third cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6316] + * third cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6316 ] + * third cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6316 ] ## Cross-references * EMAPA:25156 * FMA:6316 * NIF_GrossAnatomy:birnlex_2605 - * UMLS:C0501694 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2605] + * UMLS:C0501694 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2605 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0002940.md b/md/UBERON/40/UBERON_0002940.md index 4567721d65..f6a8f8a84c 100644 --- a/md/UBERON/40/UBERON_0002940.md +++ b/md/UBERON/40/UBERON_0002940.md @@ -6,8 +6,8 @@ ## Synonyms - * anterior crus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61966] - * anterior pillar of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61966] + * anterior crus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61966 ] + * anterior pillar of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61966 ] ## Cross-references @@ -15,7 +15,7 @@ * FMA:61966 * NIF_GrossAnatomy:birnlex_731 * NeuroNames:269 - * UMLS:C0175236 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_731] + * UMLS:C0175236 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_731 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003040.md b/md/UBERON/40/UBERON_0003040.md index 17092460e9..60914ed5b6 100644 --- a/md/UBERON/40/UBERON_0003040.md +++ b/md/UBERON/40/UBERON_0003040.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003040 * *Label* = central gray substance of midbrain - * *Definition* = Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periaqueductal_gray[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/p/obo/mouse-anatomy-requests/40/] + * *Definition* = Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periaqueductal_gray, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/p/obo/mouse-anatomy-requests/40/ ] ## Synonyms - * anulus of cerebral aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * central (periaqueductal) gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * griseum centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_973] - * midbrain periaqueductal grey [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000209] - * periaquectuctal grey [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002895[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DUBIOUS] - * periaqueductal gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * periaqueductal gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * periaqueductal gray of tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * periaqueductal grey [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002895] - * periaqueductal grey matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100249] - * periaqueductal grey substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74510] - * substantia grisea centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_973] - * CGMB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_973[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anulus aquaeductus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anulus aqueductus cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * central gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PAG] - * central gray of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510] - * central gray substance of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510] - * central grey [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000209] - * central grey substance of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510] - * griseum centrale mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * griseum periventriculare mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pAG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510] - * periaqueductal gray, proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PAG] - * s. grisea centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periaqueductal_gray[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia grisea centralis mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:510[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anulus of cerebral aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * central (periaqueductal) gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * griseum centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_973 ] + * midbrain periaqueductal grey [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000209 ] + * periaquectuctal grey [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002895, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DUBIOUS ] + * periaqueductal gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * periaqueductal gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * periaqueductal gray of tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * periaqueductal grey [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002895 ] + * periaqueductal grey matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100249 ] + * periaqueductal grey substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74510 ] + * substantia grisea centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_973 ] + * CGMB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_973, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anulus aquaeductus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anulus aqueductus cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * central gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PAG ] + * central gray of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510 ] + * central gray substance of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510 ] + * central grey [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000209 ] + * central grey substance of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510 ] + * griseum centrale mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * griseum periventriculare mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pAG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510 ] + * periaqueductal gray, proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PAG ] + * s. grisea centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periaqueductal_gray, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia grisea centralis mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:510, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -50,10 +50,10 @@ * MA:0002895 * MESH:A08.186.211.132.659.822.595 * NIF_GrossAnatomy:birnlex_973 - * NeuroNames:510 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_973] + * NeuroNames:510 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_973 ] * SCTID:369233003 * TAO:0000518 - * UMLS:C0228398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_973] + * UMLS:C0228398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_973 ] * Wikipedia:Periaqueductal_gray * ZFA:0000518 * http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png @@ -78,8 +78,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003140.md b/md/UBERON/40/UBERON_0003140.md index a7f38b7c93..b2f2c164b9 100644 --- a/md/UBERON/40/UBERON_0003140.md +++ b/md/UBERON/40/UBERON_0003140.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00001741 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000463 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003140 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_0003240.md b/md/UBERON/40/UBERON_0003240.md index c0dbdc0d89..ed42523636 100644 --- a/md/UBERON/40/UBERON_0003240.md +++ b/md/UBERON/40/UBERON_0003240.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003240 * *Label* = epithelium of lateral semicircular canal - * *Definition* = An epithelium that is part of a lateral semicircular canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lateral semicircular canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of lateral semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral semicircular canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral semicircular canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lateral semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral semicircular canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral semicircular canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral semicircular canal](../../UBERON/43/UBERON_0001843.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003340.md b/md/UBERON/40/UBERON_0003340.md index 3ec28a12ff..8709928ad3 100644 --- a/md/UBERON/40/UBERON_0003340.md +++ b/md/UBERON/40/UBERON_0003340.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = EMAPA:30891 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003340 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_0003440.md b/md/UBERON/40/UBERON_0003440.md index e49b900510..038d418210 100644 --- a/md/UBERON/40/UBERON_0003440.md +++ b/md/UBERON/40/UBERON_0003440.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003440 * *Label* = limb nerve - * *Definition* = A nerve that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003540.md b/md/UBERON/40/UBERON_0003540.md index 3cc5a4d190..4dfe6a19a0 100644 --- a/md/UBERON/40/UBERON_0003540.md +++ b/md/UBERON/40/UBERON_0003540.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003540 * *Label* = right lung terminal bronchiole - * *Definition* = A terminal bronchiole that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A terminal bronchiole that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus terminalis of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus terminalis of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001789 - * UMLS:C1709961 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung_Terminal_Bronchiole] + * UMLS:C1709961 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung_Terminal_Bronchiole ] * ncithesaurus:Right_Lung_Terminal_Bronchiole ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [terminal bronchiole](../../UBERON/87/UBERON_0002187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003640.md b/md/UBERON/40/UBERON_0003640.md index c9b25df709..54073a2a4e 100644 --- a/md/UBERON/40/UBERON_0003640.md +++ b/md/UBERON/40/UBERON_0003640.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003640 * *Label* = pedal digit 1 phalanx - * *Definition* = A phalanx that is part of a foot digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a foot digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * big toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32884] - * digit long bone of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit long bone of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 1 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 1 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001381] - * hallux digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hallux long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hallux phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * long bone of digit of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * long bone of digit of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32884] - * phalanx of first digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32884] - * phalanx of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32884] - * phalanx of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 1 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * big toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32884 ] + * digit long bone of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit long bone of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 1 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 1 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001381 ] + * hallux digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hallux long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hallux phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * long bone of digit of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * long bone of digit of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32884 ] + * phalanx of first digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32884 ] + * phalanx of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32884 ] + * phalanx of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 1 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,7 +32,7 @@ * FMA:32884 * MA:0001381 * SCTID:361798006 - * UMLS:C1708080 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_1_Phalanx] + * UMLS:C1708080 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_1_Phalanx ] * ncithesaurus:Foot_Digit_1_Phalanx ## Subsets @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0003840.md b/md/UBERON/40/UBERON_0003840.md index a6ca3d1a29..06457b4f6e 100644 --- a/md/UBERON/40/UBERON_0003840.md +++ b/md/UBERON/40/UBERON_0003840.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003840 * *Label* = hindlimb joint - * *Definition* = A limb joint that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb joint that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * joint of limb of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * limb joint of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * joint of limb of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * limb joint of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71348 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004040.md b/md/UBERON/40/UBERON_0004040.md index 1af7e03ee4..6002b98a93 100644 --- a/md/UBERON/40/UBERON_0004040.md +++ b/md/UBERON/40/UBERON_0004040.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004040 * *Label* = cortical intermediate zone - * *Definition* = the region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008457] + * *Definition* = the region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008457 ] ## Synonyms - * IZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * IZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004140.md b/md/UBERON/40/UBERON_0004140.md index d08e759c22..97d0dea3b4 100644 --- a/md/UBERON/40/UBERON_0004140.md +++ b/md/UBERON/40/UBERON_0004140.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004140 * *Label* = primary heart field - * *Definition* = A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003138[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_heart[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:rl] + * *Definition* = A specific region of the lateral mesoderm that will form the primary beating heart tube. In mammals the primary heart field gives rise to the left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003138, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_heart, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:rl ] * *Comment* = note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138] ## Synonyms - * first heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004185] - * primary heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17276708[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004185] - * heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004185] + * first heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004185 ] + * primary heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17276708, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004185 ] + * heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004185 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004240.md b/md/UBERON/40/UBERON_0004240.md index 74a2c69f18..cf148bbf61 100644 --- a/md/UBERON/40/UBERON_0004240.md +++ b/md/UBERON/40/UBERON_0004240.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004240 * *Label* = gall bladder smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a gallbladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a gallbladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gall bladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gall bladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001635] + * gall bladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gall bladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001635 ] ## Cross-references * MA:0001635 - * UMLS:C1708179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gallbladder_Smooth_Muscle_Tissue] + * UMLS:C1708179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gallbladder_Smooth_Muscle_Tissue ] * ncithesaurus:Gallbladder_Smooth_Muscle_Tissue ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gallbladder](../../UBERON/10/UBERON_0002110.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004340.md b/md/UBERON/40/UBERON_0004340.md index b4de1fc5f8..52eb845445 100644 --- a/md/UBERON/40/UBERON_0004340.md +++ b/md/UBERON/40/UBERON_0004340.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004340 * *Label* = allantois - * *Definition* = A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000738[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Allantois] + * *Definition* = A membranous sac that develops from the posterior part of the alimentary canal in the embryos of mammals, birds, and reptiles, and it is important in the formation of the umbilical cord and placenta in mammals[VHOG]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000738, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Allantois ] * *Comment* = a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"]. AO notes: part_of embryo in EHDAA2 - note differences in humans ## Synonyms - * allantoic bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16107] + * allantoic bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16107 ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A16.254.403.147 * RETIRED_EHDAA2:0000114 * SCTID:308825007 - * UMLS:C0002084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Allantois] + * UMLS:C0002084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Allantois ] * VHOG:0000738 * Wikipedia:Allantois * http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png @@ -32,7 +32,7 @@ * [mixed endoderm/mesoderm-derived structure](../../UBERON/77/UBERON_0000077.md) * [extraembryonic membrane](../../UBERON/31/UBERON_0005631.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [renal system](../../UBERON/08/UBERON_0001008.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Amniota](../../NCBITaxon/24/NCBITaxon_32524.md) * [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) * [develops from](../../RO/02/RO_0002202.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = allantoic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004440.md b/md/UBERON/40/UBERON_0004440.md index 4cfb864a6b..92428d50b1 100644 --- a/md/UBERON/40/UBERON_0004440.md +++ b/md/UBERON/40/UBERON_0004440.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004440 * *Label* = proximal epiphysis of proximal phalanx of manual digit 2 - * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of proximal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37499] - * base of proximal phalanx of second digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37499] - * base of proximal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37499] - * proximal epiphysis of proximal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37499[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * base of proximal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37499 ] + * base of proximal phalanx of second digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37499 ] + * base of proximal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37499 ] + * proximal epiphysis of proximal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37499, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manual digit 2](../../UBERON/28/UBERON_0004328.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004540.md b/md/UBERON/40/UBERON_0004540.md index 8a3795272b..828ee6d6c1 100644 --- a/md/UBERON/40/UBERON_0004540.md +++ b/md/UBERON/40/UBERON_0004540.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004540 * *Label* = proper plantar digital artery - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_plantar_digital_arteries] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_plantar_digital_arteries ] * *Comment* = the MA term, even though plural, represents the singular, as it is an isa child of artery. We use the FMA set term as it is the closest match, but the semantics of set terms are unclear ## Synonyms - * arteriae digitales plantares propriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71564[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae digitales plantares propriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71564, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * plantar digital artery proper - * proper plantar digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001968] - * arteriae digitales plantares propriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proper_plantar_digital_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of plantar digital arteries proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71564] + * proper plantar digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001968 ] + * arteriae digitales plantares propriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proper_plantar_digital_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of plantar digital arteries proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71564 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004640.md b/md/UBERON/40/UBERON_0004640.md index 26eaf869c5..67c00c1842 100644 --- a/md/UBERON/40/UBERON_0004640.md +++ b/md/UBERON/40/UBERON_0004640.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004640 * *Label* = efferent arteriole - * *Definition* = The efferent arterioles are blood vessels that are part of the urinary tract of organisms. The efferent arterioles form from a convergence of the capillaries of the glomerulus. They play an important role in maintaining the glomerular filtration rate despite fluctuations in blood pressure. In the mammalian kidney they follow two markedly different courses, depending on the location of the glomeruli from which they arise. In the mammalian kidney about 15% of glomeruli lie close to the boundary between the renal cortex and renal medulla and are known as juxtamedullary glomeruli. The rest are simply undifferentiated cortical glomeruli. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_arteriole] + * *Definition* = The efferent arterioles are blood vessels that are part of the urinary tract of organisms. The efferent arterioles form from a convergence of the capillaries of the glomerulus. They play an important role in maintaining the glomerular filtration rate despite fluctuations in blood pressure. In the mammalian kidney they follow two markedly different courses, depending on the location of the glomeruli from which they arise. In the mammalian kidney about 15% of glomeruli lie close to the boundary between the renal cortex and renal medulla and are known as juxtamedullary glomeruli. The rest are simply undifferentiated cortical glomeruli. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_arteriole ] ## Synonyms - * efferent glomerular arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005308] - * kidney efferent arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011313] - * arteriola glomerularis efferens capsulae renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_arteriole[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * efferent glomerular arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005308 ] + * kidney efferent arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011313 ] + * arteriola glomerularis efferens capsulae renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_arteriole, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004740.md b/md/UBERON/40/UBERON_0004740.md index 1ca5497932..f21e00459c 100644 --- a/md/UBERON/40/UBERON_0004740.md +++ b/md/UBERON/40/UBERON_0004740.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004740 * *Label* = basibranchial bone - * *Definition* = A basibranchial element that is bone. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A basibranchial element that is bone. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * basibranchial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000170] - * basibranchial bones [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * basibranchial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000170 ] + * basibranchial bones [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * copula 1 bone * copula I bone @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial element](../../UBERON/46/UBERON_0013746.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from copula (TAO:0001220)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass basibranchial element (TAO:0001914)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0004940.md b/md/UBERON/40/UBERON_0004940.md index b0f8147770..97dafa0362 100644 --- a/md/UBERON/40/UBERON_0004940.md +++ b/md/UBERON/40/UBERON_0004940.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004940 * *Label* = submucosa of common hepatic duct - * *Definition* = A submucosa that is part of a common hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a common hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * common hepatic duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * common hepatic ductal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18014] - * hepatic duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of hepatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * common hepatic duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * common hepatic ductal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18014 ] + * hepatic duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of hepatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [common hepatic duct](../../UBERON/75/UBERON_0001175.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005040.md b/md/UBERON/40/UBERON_0005040.md index 6afc6c6d4b..367d796383 100644 --- a/md/UBERON/40/UBERON_0005040.md +++ b/md/UBERON/40/UBERON_0005040.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005040 * *Label* = mucosa of terminal bronchiole - * *Definition* = A mucosa that is part of a terminal bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a terminal bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus terminalis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus terminalis mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus terminalis mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus terminalis organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of terminal bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of terminal bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of terminal bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus terminalis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus terminalis mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus terminalis mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus terminalis organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of terminal bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of terminal bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of terminal bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [terminal bronchiole](../../UBERON/87/UBERON_0002187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005140.md b/md/UBERON/40/UBERON_0005140.md index 1e5afb670b..12a83a30a1 100644 --- a/md/UBERON/40/UBERON_0005140.md +++ b/md/UBERON/40/UBERON_0005140.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005140 * *Label* = metanephric short nephron - * *Definition* = Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072270] + * *Definition* = Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072270 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [short nephron](../../UBERON/95/UBERON_0004195.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005240.md b/md/UBERON/40/UBERON_0005240.md index 41b47fd5eb..696258c7db 100644 --- a/md/UBERON/40/UBERON_0005240.md +++ b/md/UBERON/40/UBERON_0005240.md @@ -6,7 +6,7 @@ ## Synonyms - * medulla oblongata basal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001093] + * medulla oblongata basal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001093 ] ## Cross-references @@ -31,8 +31,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral half of the developing neural tube that is the medulla oblongata. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005340.md b/md/UBERON/40/UBERON_0005340.md index 7dedc27033..dfeeff7617 100644 --- a/md/UBERON/40/UBERON_0005340.md +++ b/md/UBERON/40/UBERON_0005340.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005340 * *Label* = dorsal telencephalic commissure - * *Definition* = A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008219] + * *Definition* = A fiber tracts that connect the dorsal region of the two cerebral hemispheres and span the longitudinal fissure, including the corpus callosum and hippocampal commissure[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008219 ] ## Synonyms - * dorsal commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008219] + * dorsal commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008219 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005440.md b/md/UBERON/40/UBERON_0005440.md index 73f48ce0ac..d4861dc445 100644 --- a/md/UBERON/40/UBERON_0005440.md +++ b/md/UBERON/40/UBERON_0005440.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005440 * *Label* = ductus arteriosus - * *Definition* = A fetal blood vessel connecting the pulmonary artery with the descending aorta[MESH]. In the developing fetus, the ductus arteriosus is a shunt connecting the pulmonary artery to the aortic arch. It allows most of the blood from the right ventricle to bypass the fetus' fluid-filled lungs, protecting the lungs from being overworked and allowing the left ventricle to strengthen. There are two other fetal shunts, the ductus venosus and the foramen ovale[MP]. the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.541.278.395[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010564[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] + * *Definition* = A fetal blood vessel connecting the pulmonary artery with the descending aorta[MESH]. In the developing fetus, the ductus arteriosus is a shunt connecting the pulmonary artery to the aortic arch. It allows most of the blood from the right ventricle to bypass the fetus' fluid-filled lungs, protecting the lungs from being overworked and allowing the left ventricle to strengthen. There are two other fetal shunts, the ductus venosus and the foramen ovale[MP]. the fetal vessel that connects the left pulmonary artery with the descending aorta; the ductus arteriosus normally regresses into a fibrous cord, the ligamentum arteriousum after birth[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.541.278.395, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010564, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] ## Synonyms - * ductus Botallo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010564] - * Botallo's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] - * arterial canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010564] - * arterial duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010564] - * ductus arteriosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] - * ductus arteriosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] - * ductus botalli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] - * ductus layton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductus_arteriosus] - * fetal ductus arteriosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010564] + * ductus Botallo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010564 ] + * Botallo's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] + * arterial canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010564 ] + * arterial duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010564 ] + * ductus arteriosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] + * ductus arteriosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] + * ductus botalli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] + * ductus layton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductus_arteriosus ] + * fetal ductus arteriosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010564 ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0001947 * MESH:A07.541.278.395 * SCTID:253684002 - * UMLS:C0013273 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ductus_Arteriosus] + * UMLS:C0013273 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ductus_Arteriosus ] * VHOG:0000923 * Wikipedia:Ductus_arteriosus * galen:DuctusArteriosus @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The temporary channel or blood vessel between the aorta and pulmonary artery in the fetus. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = On the other hand, in the sister clade of the actinopterygians, the sarcopterygians, the gill circulation is supplemented with lung ventilation. As a result, the pulmonary artery and vein and a functional ductus arteriosus arose as a major evolutionary innovation from the sixth arch, giving the organism a flexible shunt to balance blood supply to and from gills and lungs according to environmental conditions.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005640.md b/md/UBERON/40/UBERON_0005640.md index b76632ed79..e34d778563 100644 --- a/md/UBERON/40/UBERON_0005640.md +++ b/md/UBERON/40/UBERON_0005640.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005640 * *Label* = right lung caudal lobe epithelium - * *Definition* = An epithelium that is part of a lower lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of right lung](../../UBERON/71/UBERON_0002171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005740.md b/md/UBERON/40/UBERON_0005740.md index 5d14eca1b3..2862a826de 100644 --- a/md/UBERON/40/UBERON_0005740.md +++ b/md/UBERON/40/UBERON_0005740.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005740 * *Label* = tunica intima of artery - * *Definition* = A tunica intima that is part of a artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica intima that is part of a artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arterial intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100028] - * tunica interna (intima)(arteriae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14272] + * arterial intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100028 ] + * tunica interna (intima)(arteriae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14272 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) and [tunica intima](../../UBERON/23/UBERON_0002523.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0005840.md b/md/UBERON/40/UBERON_0005840.md index 15e3df0673..842342e6c0 100644 --- a/md/UBERON/40/UBERON_0005840.md +++ b/md/UBERON/40/UBERON_0005840.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005840 * *Label* = sacral spinal cord dorsal column - * *Definition* = A subdivision of spinal cord dorsal column that is part of a sacral spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord dorsal column that is part of a sacral spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sacral spinal cord posterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1514] - * sacral subsegment of dorsal funiculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258198] + * sacral spinal cord posterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1514 ] + * sacral subsegment of dorsal funiculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258198 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral spinal cord](../../UBERON/43/UBERON_0005843.md) and [subdivision of spinal cord dorsal column](../../UBERON/79/UBERON_0006079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006140.md b/md/UBERON/40/UBERON_0006140.md index 56184f9d64..a6b894d94c 100644 --- a/md/UBERON/40/UBERON_0006140.md +++ b/md/UBERON/40/UBERON_0006140.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006140 * *Label* = palmar digital vein - * *Definition* = The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the 'proper palmar digital veins', which are more distal, and the 'common palmar digital veins', which are more proximal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_digital_veins] + * *Definition* = The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the 'proper palmar digital veins', which are more distal, and the 'common palmar digital veins', which are more proximal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_digital_veins ] ## Synonyms - * palmar digital veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70895[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * palmar digital veins set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70895[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * venae digitales palmares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70895[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of palmar digital veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70895] - * venae digitales palmares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_digital_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * volar digital veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_digital_veins] + * palmar digital veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70895, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * palmar digital veins set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70895, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * venae digitales palmares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70895, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of palmar digital veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70895 ] + * venae digitales palmares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_digital_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * volar digital veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_digital_veins ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006240.md b/md/UBERON/40/UBERON_0006240.md index 02d7409409..bcdcecb349 100644 --- a/md/UBERON/40/UBERON_0006240.md +++ b/md/UBERON/40/UBERON_0006240.md @@ -8,9 +8,9 @@ ## Synonyms * future prosencephalon - * presumptive forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000062] - * presumptive prosencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000062] - * prosencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000661] + * presumptive forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000062 ] + * presumptive prosencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000062 ] + * prosencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000661 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006340.md b/md/UBERON/40/UBERON_0006340.md index 8fb0705082..782a9077d8 100644 --- a/md/UBERON/40/UBERON_0006340.md +++ b/md/UBERON/40/UBERON_0006340.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006340 * *Label* = fourth ventricle choroid plexus stroma - * *Definition* = A choroid plexus stroma that is part of a fourth ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus stroma that is part of a fourth ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus stroma](../../UBERON/06/UBERON_0005206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006440.md b/md/UBERON/40/UBERON_0006440.md index 89f53994c8..0bc00f7e4d 100644 --- a/md/UBERON/40/UBERON_0006440.md +++ b/md/UBERON/40/UBERON_0006440.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006440 * *Label* = os clitoris - * *Definition* = The ossified region of endochondral and membranous bone located in the clitoris of most mammals except humans;it is homologous to the penile bone (aka as baculum, penis bone or os penis) in male mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011849] + * *Definition* = The ossified region of endochondral and membranous bone located in the clitoris of most mammals except humans;it is homologous to the penile bone (aka as baculum, penis bone or os penis) in male mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011849 ] ## Synonyms - * baubellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] - * clitoral bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011849] + * baubellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] + * clitoral bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011849 ] * clitoris bone - * os clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Baculum] + * os clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Baculum ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [clitoris](../../UBERON/11/UBERON_0002411.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0006435 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006640.md b/md/UBERON/40/UBERON_0006640.md index 7179c76afa..418d32ebf9 100644 --- a/md/UBERON/40/UBERON_0006640.md +++ b/md/UBERON/40/UBERON_0006640.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006640 * *Label* = crus of clitoris - * *Definition* = The clitoral crura are an internal portion of the clitoris. A single one is called a clitoral crus. They are shaped like an inverted 'V' with the vertex of the 'V' connecting to the clitoral body. They are near the vestibular bulbs, also known as the clitoral bulbs. They are to the left and right of the urethra, urethral sponge, and vagina and extend back toward the pubic bone. The clitoral crura contain muscles called the ischiocavernosi. 'Crus' basically translates as 'leg', thus 'crura' as 'legs'. Each clitoral crus connects to the rami of the pubis and the ischium. The crura, like the rest of the clitoris, are composed of two corpus cavernosa muscles, which are made up of erectile tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_clitoris] + * *Definition* = The clitoral crura are an internal portion of the clitoris. A single one is called a clitoral crus. They are shaped like an inverted 'V' with the vertex of the 'V' connecting to the clitoral body. They are near the vestibular bulbs, also known as the clitoral bulbs. They are to the left and right of the urethra, urethral sponge, and vagina and extend back toward the pubic bone. The clitoral crura contain muscles called the ischiocavernosi. 'Crus' basically translates as 'leg', thus 'crura' as 'legs'. Each clitoral crus connects to the rami of the pubis and the ischium. The crura, like the rest of the clitoris, are composed of two corpus cavernosa muscles, which are made up of erectile tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_clitoris ] ## Synonyms - * Clitoris crus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20175] - * crura of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_crura] - * crus clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_crura] - * crus of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_crura] + * Clitoris crus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20175 ] + * crura of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_crura ] + * crus clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_crura ] + * crus of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_crura ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0006840.md b/md/UBERON/40/UBERON_0006840.md index 3150635015..f50b31c675 100644 --- a/md/UBERON/40/UBERON_0006840.md +++ b/md/UBERON/40/UBERON_0006840.md @@ -7,12 +7,12 @@ ## Synonyms - * lateral lemniscus nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000380] - * lateral lemniscus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000380] - * nuclei lemnisci lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84025[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei of lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84025] - * nucleus of the lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NLL] - * set of nuclei of lateral lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84025] + * lateral lemniscus nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000380 ] + * lateral lemniscus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000380 ] + * nuclei lemnisci lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84025, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei of lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84025 ] + * nucleus of the lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NLL ] + * set of nuclei of lateral lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84025 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0007140.md b/md/UBERON/40/UBERON_0007140.md index 22dce7955a..2e80ca58e1 100644 --- a/md/UBERON/40/UBERON_0007140.md +++ b/md/UBERON/40/UBERON_0007140.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007140 * *Label* = parietal mesothelium - * *Definition* = Mesothelium overs the body walls is called the parietal mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Mesothelium] + * *Definition* = Mesothelium overs the body walls is called the parietal mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Mesothelium ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0007240.md b/md/UBERON/40/UBERON_0007240.md index 1b9c670aa5..330f7d6ce2 100644 --- a/md/UBERON/40/UBERON_0007240.md +++ b/md/UBERON/40/UBERON_0007240.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007240 * *Label* = tunica adventitia of artery - * *Definition* = A tunica adventitia that is part of a artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica adventitia that is part of a artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arterial adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100030] - * tunica externa (adventitia)(arteriae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14274] + * arterial adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100030 ] + * tunica externa (adventitia)(arteriae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14274 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) and [tunica adventitia of blood vessel](../../UBERON/34/UBERON_0005734.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0007440.md b/md/UBERON/40/UBERON_0007440.md index 56aabe0635..ff4d39c59c 100644 --- a/md/UBERON/40/UBERON_0007440.md +++ b/md/UBERON/40/UBERON_0007440.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007440 * *Label* = stratum intermedium of tooth - * *Definition* = The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_intermedium] + * *Definition* = The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_intermedium ] ## Synonyms - * stratum intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005009] + * stratum intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005009 ] ## Cross-references * BTO:0005009 - * UMLS:C1514987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Intermedium] + * UMLS:C1514987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Intermedium ] * Wikipedia:Stratum_intermedium * ncithesaurus:Stratum_Intermedium @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0007540.md b/md/UBERON/40/UBERON_0007540.md index 840624ff1c..963edb4661 100644 --- a/md/UBERON/40/UBERON_0007540.md +++ b/md/UBERON/40/UBERON_0007540.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = AEO:0000173 * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0003173 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007540 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_0007640.md b/md/UBERON/40/UBERON_0007640.md index 92a364686b..58b70fc45c 100644 --- a/md/UBERON/40/UBERON_0007640.md +++ b/md/UBERON/40/UBERON_0007640.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007640 * *Label* = hippocampus stratum lacunosum moleculare - * *Definition* = A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + nif_annot:NeuroNames_defSource] + * *Definition* = A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = nif_annot:NeuroNames_defSource ] ## Synonyms - * lacunar-molecular layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83149] - * stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1359] - * stratum lacunosum-moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:ABA] - * gyrus occipitalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:155[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * middle occipital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:155] + * lacunar-molecular layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83149 ] + * stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1359 ] + * stratum lacunosum-moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:ABA ] + * gyrus occipitalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:155, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * middle occipital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:155 ] ## Cross-references * BAMS:O2 * FMA:83149 * NIF_GrossAnatomy:birnlex_1359 - * NeuroNames:155 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1359] + * NeuroNames:155 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1359 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0007840.md b/md/UBERON/40/UBERON_0007840.md index 920f0bafd5..f5ef986d61 100644 --- a/md/UBERON/40/UBERON_0007840.md +++ b/md/UBERON/40/UBERON_0007840.md @@ -6,9 +6,9 @@ ## Synonyms - * commissura alba posterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal white commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77034] - * posterior white commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77034] + * commissura alba posterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal white commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77034 ] + * posterior white commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77034 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0008340.md b/md/UBERON/40/UBERON_0008340.md index d242fc3278..39642f8b84 100644 --- a/md/UBERON/40/UBERON_0008340.md +++ b/md/UBERON/40/UBERON_0008340.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008340 * *Label* = nasal bridge - * *Definition* = A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_bridge[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] + * *Definition* = A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_bridge, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008340 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0008440.md b/md/UBERON/40/UBERON_0008440.md index fd6d8c2a6f..a7e21deaac 100644 --- a/md/UBERON/40/UBERON_0008440.md +++ b/md/UBERON/40/UBERON_0008440.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008440 * *Label* = webbed autopod - * *Definition* = An autopod region that has_part a webbed interdigital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An autopod region that has_part a webbed interdigital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod region](../../UBERON/70/UBERON_0002470.md) and [has_part](../../BFO/51/BFO_0000051.md) some [webbed interdigital region](../../UBERON/15/UBERON_0006015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0008840.md b/md/UBERON/40/UBERON_0008840.md index 9adaca429d..129aba1f70 100644 --- a/md/UBERON/40/UBERON_0008840.md +++ b/md/UBERON/40/UBERON_0008840.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008840 * *Label* = plantar pad - * *Definition* = An autopod pad that is in the metatarsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An autopod pad that is in the metatarsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * fore foot pad * metatarsal foot pad * metatarsal pad - * plantar pads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18507[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * plantar pads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18507, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metapodial pad](../../UBERON/38/UBERON_0008838.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsus region](../../UBERON/83/UBERON_0000983.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The canine metatarsal pad is large and heart-shaped, and functions to cushion the foot. The pad is covered by a naked, densely cornified epidermis, which is usually highly pigmented and is the toughest region of the canine skin. The digital cushion or bulk of the foot pad is composed of a subcutaneous adipose tissue, partitioned by reticular, collagenous and elastic fibres. The subcutis of the canine footpads contains sweat glands embedded in the adipose tissue. The ducts of these glands channel through the thick epidermis of the foot pad. The secretions from these glands function as territorial or trail markers[MURDOCH:1334]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0008940.md b/md/UBERON/40/UBERON_0008940.md index 3ae012a3dd..d96e533b7e 100644 --- a/md/UBERON/40/UBERON_0008940.md +++ b/md/UBERON/40/UBERON_0008940.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008940 * *Label* = parietal ganglion - * *Definition* = The lateral ganglia of a snail nervous system are called parietal ganglia. They innerve pallial cavity, gills and skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001841] + * *Definition* = The lateral ganglia of a snail nervous system are called parietal ganglia. They innerve pallial cavity, gills and skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001841 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0009040.md b/md/UBERON/40/UBERON_0009040.md index 71da8ea31b..eed109e2f5 100644 --- a/md/UBERON/40/UBERON_0009040.md +++ b/md/UBERON/40/UBERON_0009040.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009040 * *Label* = deep circumflex iliac artery - * *Definition* = The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_artery] + * *Definition* = The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_artery ] ## Synonyms - * arteria circumflexa ilium profunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_artery] - * arteria circumflexa ilium profunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * deep iliac circumflex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_artery] - * deep iliac circumflex artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_artery] + * arteria circumflexa ilium profunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_artery ] + * arteria circumflexa ilium profunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * deep iliac circumflex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_artery ] + * deep iliac circumflex artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_artery ] ## Cross-references * FMA:20687 * SCTID:181353005 - * UMLS:C0226405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Circumflex_Iliac_Artery] + * UMLS:C0226405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Circumflex_Iliac_Artery ] * Wikipedia:Deep_circumflex_iliac_artery * http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png * http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0009140.md b/md/UBERON/40/UBERON_0009140.md index e692dd068e..d42e1d731c 100644 --- a/md/UBERON/40/UBERON_0009140.md +++ b/md/UBERON/40/UBERON_0009140.md @@ -6,7 +6,7 @@ ## Synonyms - * subcardinal vein right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004538] + * subcardinal vein right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004538 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [subcardinal vein](../../UBERON/96/UBERON_0006296.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0009640.md b/md/UBERON/40/UBERON_0009640.md index 127681cf6e..1dbc57a5ec 100644 --- a/md/UBERON/40/UBERON_0009640.md +++ b/md/UBERON/40/UBERON_0009640.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009640 * *Label* = hypophyseal cartilage - * *Definition* = forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:1588903958] + * *Definition* = forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:1588903958 ] * *Comment* = classified as part of chondrocranium based on developmental relationships ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0009740.md b/md/UBERON/40/UBERON_0009740.md index 382ad429dd..8d84363884 100644 --- a/md/UBERON/40/UBERON_0009740.md +++ b/md/UBERON/40/UBERON_0009740.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009740 * *Label* = border between sublaminar layers - * *Definition* = A region of the retina corresponding to a portion of two adjacent substratum layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A region of the retina corresponding to a portion of two adjacent substratum layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -19,7 +19,7 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [organ component layer](../../UBERON/23/UBERON_0004923.md) * [part_of](../../BFO/50/BFO_0000050.md) some [retina](../../UBERON/66/UBERON_0000966.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [substratum of layer of retina](../../UBERON/21/UBERON_0008921.md) ## Equivalencies @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0009840.md b/md/UBERON/40/UBERON_0009840.md index 5f2aee0615..eab16b1c49 100644 --- a/md/UBERON/40/UBERON_0009840.md +++ b/md/UBERON/40/UBERON_0009840.md @@ -3,11 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009840 * *Label* = lower rhombic lip - * *Definition* = Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * caudal rhombic lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * caudal rhombic lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lower (caudal) rhombic lip ## Cross-references @@ -21,13 +22,13 @@ * [regional part of brain](../../UBERON/16/UBERON_0002616.md) * [part_of](../../BFO/50/BFO_0000050.md) some [rhombic lip](../../UBERON/15/UBERON_0006215.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 3](../../UBERON/07/UBERON_0005507.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 4](../../UBERON/11/UBERON_0005511.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 5](../../UBERON/15/UBERON_0005515.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 6](../../UBERON/19/UBERON_0005519.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 7](../../UBERON/23/UBERON_0005523.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 8](../../UBERON/27/UBERON_0005527.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 2](../../UBERON/69/UBERON_0005569.md) ## Equivalencies @@ -37,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0010040.md b/md/UBERON/40/UBERON_0010040.md index 73ba31b9e2..0c8f4005b9 100644 --- a/md/UBERON/40/UBERON_0010040.md +++ b/md/UBERON/40/UBERON_0010040.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010040 * *Label* = stomach non-glandular epithelium - * *Definition* = Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Editor notes: OWL definition to be added later. Taxon notes: this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized. ## Synonyms * stomach aglandular epithelium - * stomach squamous epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611] + * stomach squamous epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [non-glandular epithelium](../../UBERON/52/UBERON_0011952.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0010240.md b/md/UBERON/40/UBERON_0010240.md index 0ae230dd25..36f8cb4e5a 100644 --- a/md/UBERON/40/UBERON_0010240.md +++ b/md/UBERON/40/UBERON_0010240.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010240 * *Label* = zygomatic gland - * *Definition* = a salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/zygomatic+gland] + * *Definition* = a salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/zygomatic+gland ] ## Synonyms @@ -14,7 +14,7 @@ ## Cross-references - * UMLS:C2700338 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zygomatic_Gland] + * UMLS:C2700338 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zygomatic_Gland ] * ncithesaurus:Zygomatic_Gland ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0010540.md b/md/UBERON/40/UBERON_0010540.md index 5de9af206d..eebb3b24b2 100644 --- a/md/UBERON/40/UBERON_0010540.md +++ b/md/UBERON/40/UBERON_0010540.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010540 * *Label* = tarsus pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tarsal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tarsal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [tarsal bone](../../UBERON/47/UBERON_0001447.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0010740.md b/md/UBERON/40/UBERON_0010740.md index 9f66a69959..506e897490 100644 --- a/md/UBERON/40/UBERON_0010740.md +++ b/md/UBERON/40/UBERON_0010740.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010740 * *Label* = bone of appendage girdle complex - * *Definition* = A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * bone of extended limb/fin region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000688[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * bone of extended limb/fin region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000688, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendage girdle complex](../../UBERON/07/UBERON_0010707.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0010940.md b/md/UBERON/40/UBERON_0010940.md index 03a3139890..ecd24f6792 100644 --- a/md/UBERON/40/UBERON_0010940.md +++ b/md/UBERON/40/UBERON_0010940.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010940 * *Label* = belly of digastric - * *Definition* = A muscle belly that is part of a digastric muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle belly that is part of a digastric muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digastric belly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46297] + * digastric belly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46297 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle belly](../../UBERON/38/UBERON_0010938.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digastric muscle](../../UBERON/62/UBERON_0001562.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0011140.md b/md/UBERON/40/UBERON_0011140.md index 7ac7f8638a..5196da9b27 100644 --- a/md/UBERON/40/UBERON_0011140.md +++ b/md/UBERON/40/UBERON_0011140.md @@ -6,11 +6,11 @@ ## Synonyms - * masseter, superficial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * pars superficialis (musculus masseter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49000] + * masseter, superficial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * pars superficialis (musculus masseter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49000 ] * pars superficialis of masseter muscle - * superficial layer of masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49000] - * superficial part of masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49000] + * superficial layer of masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49000 ] + * superficial part of masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49000 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The superficial masseter is a separable part of the masseter muscle, is superficial to all other masseter muscle parts, and attaches to the mandibular angle.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0011640.md b/md/UBERON/40/UBERON_0011640.md index 4d3d02dd20..d9ed32c3ce 100644 --- a/md/UBERON/40/UBERON_0011640.md +++ b/md/UBERON/40/UBERON_0011640.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011640 * *Label* = palatoglossal arch - * *Definition* = A fold that lies between the mouth and pharynx and marks the posterior border of the mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoglossal_arch] + * *Definition* = A fold that lies between the mouth and pharynx and marks the posterior border of the mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoglossal_arch ] ## Synonyms - * anterior pillar of fauces [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55024] - * arcus glossopalatinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoglossal_arch] - * arcus palatoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoglossal_arch] - * glossopalatine arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55024] - * plica anterior faucium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior pillar of fauces [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55024 ] + * arcus glossopalatinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoglossal_arch ] + * arcus palatoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoglossal_arch ] + * glossopalatine arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55024 ] + * plica anterior faucium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0011940.md b/md/UBERON/40/UBERON_0011940.md index 636bf44227..97219d1269 100644 --- a/md/UBERON/40/UBERON_0011940.md +++ b/md/UBERON/40/UBERON_0011940.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011940 * *Label* = arrector pili muscle of vibrissa - * *Definition* = An arrector muscle of hair that is part of a vibrissa hair. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arrector muscle of hair that is part of a vibrissa hair. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arrector muscle of hair](../../UBERON/33/UBERON_0002033.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vibrissa hair](../../UBERON/78/UBERON_0006378.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0012140.md b/md/UBERON/40/UBERON_0012140.md index 911ccb5e95..a071851fcb 100644 --- a/md/UBERON/40/UBERON_0012140.md +++ b/md/UBERON/40/UBERON_0012140.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012140 * *Label* = digitopodium region - * *Definition* = A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni] + * *Definition* = A segment of the autopod consisting of both acropodial region and metapodial region, but excluding the mesopodial/basopodial region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni ] * *Comment* = Terminology notes: some sources call this the acropodium. see http://purl.obolibrary.org/obo/uberon/references/reference_0000019 ## Synonyms @@ -30,9 +30,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012140 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_0012240.md b/md/UBERON/40/UBERON_0012240.md index d1081623fc..84552ced4e 100644 --- a/md/UBERON/40/UBERON_0012240.md +++ b/md/UBERON/40/UBERON_0012240.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012240 * *Label* = urethral meatus - * *Definition* = external opening or orifice of the urethra through which urine and seminal fluid (in males only) leave the body; in males the meatus presents as a vertical slit normally positioned at the tip of glans penis; in females the meatus is located between the clitoris and the vagina in the vulvular vestibule of the female genitalia[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urinary_meatus] + * *Definition* = external opening or orifice of the urethra through which urine and seminal fluid (in males only) leave the body; in males the meatus presents as a vertical slit normally positioned at the tip of glans penis; in females the meatus is located between the clitoris and the vagina in the vulvular vestibule of the female genitalia[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urinary_meatus ] ## Synonyms - * external meatus of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19650] - * external urethral orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19650] - * external urethral ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19650] - * external urinary meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19650] - * meatus urinarius [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orificium urethrae externum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orificium urethr externum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urethral meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19650] + * external meatus of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19650 ] + * external urethral orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19650 ] + * external urethral ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19650 ] + * external urinary meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19650 ] + * meatus urinarius [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orificium urethrae externum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orificium urethr externum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urethral meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19650 ] * urinary meatus ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0013140.md b/md/UBERON/40/UBERON_0013140.md index 418a1abebf..d7eb7906fb 100644 --- a/md/UBERON/40/UBERON_0013140.md +++ b/md/UBERON/40/UBERON_0013140.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013140 * *Label* = systemic vein - * *Definition* = Any vein within the general circulation that transports blood back to the right atrium of the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Systemic_Vein] + * *Definition* = Any vein within the general circulation that transports blood back to the right atrium of the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Systemic_Vein ] ## Synonyms - * systemic venous tree organ part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66644] + * systemic venous tree organ part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66644 ] ## Cross-references * FMA:66644 * SCTID:244389004 - * UMLS:C0447117 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Systemic_Vein] + * UMLS:C0447117 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Systemic_Vein ] * ncithesaurus:Systemic_Vein ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [systemic venous system](../../UBERON/81/UBERON_0004581.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013140 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0013240.md b/md/UBERON/40/UBERON_0013240.md index a84e5fe11d..d5982c0b61 100644 --- a/md/UBERON/40/UBERON_0013240.md +++ b/md/UBERON/40/UBERON_0013240.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [future glans](../../UBERON/38/UBERON_0013238.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female genital tubercle](../../UBERON/33/UBERON_0006233.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013240 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0013540.md b/md/UBERON/40/UBERON_0013540.md index 16c8337c5d..6da9ddc966 100644 --- a/md/UBERON/40/UBERON_0013540.md +++ b/md/UBERON/40/UBERON_0013540.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013540 * *Label* = Brodmann (1909) area 9 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_9] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_9 ] ## Synonyms - * B09-9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1740] - * Brodmann (1909) area 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1740] - * Brodmann area 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68606] - * Brodmann area 9, granular frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1740] - * Granular frontal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68606] - * area 9 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68606] - * area 9 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1740] - * area frontalis granularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1740] - * area frontalis granularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_9[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1740[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 9 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1024] - * brodmann's area 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1024] + * B09-9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1740 ] + * Brodmann (1909) area 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1740 ] + * Brodmann area 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68606 ] + * Brodmann area 9, granular frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1740 ] + * Granular frontal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68606 ] + * area 9 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68606 ] + * area 9 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1740 ] + * area frontalis granularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1740 ] + * area frontalis granularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_9, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1740, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 9 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1024 ] + * brodmann's area 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1024 ] ## Cross-references * FMA:68606 * NIF_GrossAnatomy:birnlex_1740 - * NeuroNames:1024 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1740] - * UMLS:C1272531 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1740] + * NeuroNames:1024 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1740 ] + * UMLS:C1272531 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1740 ] * Wikipedia:Brodmann_area_9 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0013640.md b/md/UBERON/40/UBERON_0013640.md index fbde6d240d..163a501d8a 100644 --- a/md/UBERON/40/UBERON_0013640.md +++ b/md/UBERON/40/UBERON_0013640.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0013740.md b/md/UBERON/40/UBERON_0013740.md index b5ac164074..d0be16409f 100644 --- a/md/UBERON/40/UBERON_0013740.md +++ b/md/UBERON/40/UBERON_0013740.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013740 * *Label* = wall of crypt of lieberkuhn - * *Definition* = The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:md] + * *Definition* = The lateral parts of an intestinal crypt, continuous distally with the base and proximally with the intestinal villus epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:md ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [base of crypt of lieberkuhn](../../UBERON/39/UBERON_0013739.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014440.md b/md/UBERON/40/UBERON_0014440.md index 7f9f0ec73e..1030cb9bd6 100644 --- a/md/UBERON/40/UBERON_0014440.md +++ b/md/UBERON/40/UBERON_0014440.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014440 * *Label* = ischiopubic ramus - * *Definition* = The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiopubic_ramus] + * *Definition* = The ischiopubic ramus is a compound structure consisting of the following two structures: from the pubis, the inferior pubic ramus from the ischium, the inferior ramus of the ischium It serves as part of the origin for the Obturator internus muscle. It also marks a vertex of the anal triangle and the urogenital triangle. The fascia of Colles is attached to its margin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiopubic_ramus ] ## Synonyms - * conjoint ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43533] - * ischiopubic rami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiopubic_ramus] - * rami of the pubis and ischium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischiopubic_ramus] + * conjoint ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43533 ] + * ischiopubic rami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiopubic_ramus ] + * rami of the pubis and ischium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischiopubic_ramus ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014440 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014540.md b/md/UBERON/40/UBERON_0014540.md index 71f9d8b964..2c1297b459 100644 --- a/md/UBERON/40/UBERON_0014540.md +++ b/md/UBERON/40/UBERON_0014540.md @@ -8,21 +8,21 @@ * lamina alba of cerebellar cortex * laminae albae of cerebellar cortex - * white laminae of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1105[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * isthmus cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus gyri cingulatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus gyri cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus of Gyrus fornicatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * isthmus of the cingulate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163] - * isthmus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:163[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * laminae albae of cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1105[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * white laminae of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1105, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * isthmus cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus gyri cingulatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus gyri cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus of Gyrus fornicatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * isthmus of the cingulate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163 ] + * isthmus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:163, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * laminae albae of cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1105, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * NIF_GrossAnatomy:birnlex_1105 - * NeuroNames:163 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1105] + * NeuroNames:163 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1105 ] * SCTID:362413004 - * UMLS:C0228472 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1105] + * UMLS:C0228472 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1105 ] ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina of neuraxis](../../UBERON/30/UBERON_0014530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar cortex](../../UBERON/29/UBERON_0002129.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014540 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014640.md b/md/UBERON/40/UBERON_0014640.md index 726bec9ebf..52ba78dd19 100644 --- a/md/UBERON/40/UBERON_0014640.md +++ b/md/UBERON/40/UBERON_0014640.md @@ -6,14 +6,14 @@ ## Synonyms - * gyrus occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:152[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:152, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:OG * NIF_GrossAnatomy:birnlex_747 - * NeuroNames:152 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_747] - * UMLS:C1110642 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_747] + * NeuroNames:152 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_747 ] + * UMLS:C1110642 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_747 ] ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gyrus](../../UBERON/00/UBERON_0000200.md) and [part_of](../../BFO/50/BFO_0000050.md) some [occipital lobe](../../UBERON/21/UBERON_0002021.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014640 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014740.md b/md/UBERON/40/UBERON_0014740.md index 2886523ea0..8c6d3e4d5d 100644 --- a/md/UBERON/40/UBERON_0014740.md +++ b/md/UBERON/40/UBERON_0014740.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014740 * *Label* = dorsal pallium - * *Definition* = Subdivision of pallium that is located dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Subdivision of pallium that is located dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms * area dorsalis telencephali, zona dorsalis * dorsal zone of dorsal telencephalic area * dorsal zone of dorsal telencephalon - * DP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * DP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * dorsal zone of D ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014740 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014840.md b/md/UBERON/40/UBERON_0014840.md index 3e91b58c9e..9575acc3b9 100644 --- a/md/UBERON/40/UBERON_0014840.md +++ b/md/UBERON/40/UBERON_0014840.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014840 * *Label* = supracoracoideus muscle - * *Definition* = A muscle that is important to the body support of limbed reptiles, underlies the front part of the pectoral muscle, arises from the coracoid, and passes to the underpart of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/supracoracoideus] + * *Definition* = A muscle that is important to the body support of limbed reptiles, underlies the front part of the pectoral muscle, arises from the coracoid, and passes to the underpart of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/supracoracoideus ] * *Comment* = Ventral group[Kardong] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014840 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0014940.md b/md/UBERON/40/UBERON_0014940.md index 11cf37610a..d599b236df 100644 --- a/md/UBERON/40/UBERON_0014940.md +++ b/md/UBERON/40/UBERON_0014940.md @@ -6,7 +6,7 @@ ## Synonyms - * SZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * SZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * cerebral cortex subventricular zone ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014940 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_0015040.md b/md/UBERON/40/UBERON_0015040.md index 35ce32783f..46fadb24f3 100644 --- a/md/UBERON/40/UBERON_0015040.md +++ b/md/UBERON/40/UBERON_0015040.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015040 * *Label* = pedal digit 4 metatarsal endochondral element - * *Definition* = A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 4 metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 4 metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 4 metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 4 metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [metatarsal bone of digit 4](../../UBERON/53/UBERON_0003653.md)or[pedal digit 4 metatarsal cartilage element](../../UBERON/60/UBERON_0010560.md)or[pedal digit 4 metatarsal pre-cartilage condensation](../../UBERON/50/UBERON_0010550.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015040 + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000040.md b/md/UBERON/40/UBERON_2000040.md index 68fcf8dee3..6b0116bbab 100644 --- a/md/UBERON/40/UBERON_2000040.md +++ b/md/UBERON/40/UBERON_2000040.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000040 * *Label* = median fin fold - * *Definition* = Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * median fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000040] - * median fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000040] - * median fin-folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000040[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * median fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000040 ] + * median fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000040 ] + * median fin-folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000040, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000240.md b/md/UBERON/40/UBERON_2000240.md index d6d0055fc1..9b89853350 100644 --- a/md/UBERON/40/UBERON_2000240.md +++ b/md/UBERON/40/UBERON_2000240.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000240 * *Label* = metapterygoid - * *Definition* = Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * metapterygoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000240[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * metapterygoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000240, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000340.md b/md/UBERON/40/UBERON_2000340.md index 3c1621150a..c663854c57 100644 --- a/md/UBERON/40/UBERON_2000340.md +++ b/md/UBERON/40/UBERON_2000340.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_2000440.md b/md/UBERON/40/UBERON_2000440.md index c17534c51a..9b226ff281 100644 --- a/md/UBERON/40/UBERON_2000440.md +++ b/md/UBERON/40/UBERON_2000440.md @@ -6,7 +6,7 @@ ## Synonyms - * anterior raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000440] + * anterior raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000440 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000540.md b/md/UBERON/40/UBERON_2000540.md index 21f9954a47..0350bf42a8 100644 --- a/md/UBERON/40/UBERON_2000540.md +++ b/md/UBERON/40/UBERON_2000540.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000740.md b/md/UBERON/40/UBERON_2000740.md index 7f39fcc9f5..c00bfb7efe 100644 --- a/md/UBERON/40/UBERON_2000740.md +++ b/md/UBERON/40/UBERON_2000740.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000740 * *Label* = epaxial region somite 5 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2000840.md b/md/UBERON/40/UBERON_2000840.md index 3763ca4f58..2d761edcb1 100644 --- a/md/UBERON/40/UBERON_2000840.md +++ b/md/UBERON/40/UBERON_2000840.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000840[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000840, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_2000940.md b/md/UBERON/40/UBERON_2000940.md index bfb3addc0d..51e8407138 100644 --- a/md/UBERON/40/UBERON_2000940.md +++ b/md/UBERON/40/UBERON_2000940.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000940 * *Label* = posterior lateral line neuromast - * *Definition* = Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000940] - * neuromasts posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000940[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * neuromast posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000940 ] + * neuromasts posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000940, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001040.md b/md/UBERON/40/UBERON_2001040.md index 8e745e3cec..6fd6648879 100644 --- a/md/UBERON/40/UBERON_2001040.md +++ b/md/UBERON/40/UBERON_2001040.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001040 * *Label* = epaxial region somite 24 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001140.md b/md/UBERON/40/UBERON_2001140.md index ae768f01cf..0d142a0559 100644 --- a/md/UBERON/40/UBERON_2001140.md +++ b/md/UBERON/40/UBERON_2001140.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001140 * *Label* = dorsal tooth row - * *Definition* = Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001240.md b/md/UBERON/40/UBERON_2001240.md index f4c715259e..ae0f3a91c9 100644 --- a/md/UBERON/40/UBERON_2001240.md +++ b/md/UBERON/40/UBERON_2001240.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001240 * *Label* = ceratobranchial 4 bone - * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001340.md b/md/UBERON/40/UBERON_2001340.md index 58718ff094..a173a61a3c 100644 --- a/md/UBERON/40/UBERON_2001340.md +++ b/md/UBERON/40/UBERON_2001340.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001340 * *Label* = nucleus of the tract of the postoptic commissure - * *Definition* = The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ntPOC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001340] + * ntPOC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001340 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001540.md b/md/UBERON/40/UBERON_2001540.md index 22901da7c5..dfeb09abe1 100644 --- a/md/UBERON/40/UBERON_2001540.md +++ b/md/UBERON/40/UBERON_2001540.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001540 * *Label* = pelvic radial 3 cartilage - * *Definition* = Small cartilage that forms at the posterior and medial edge of the basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small cartilage that forms at the posterior and medial edge of the basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001640.md b/md/UBERON/40/UBERON_2001640.md index 7b56492e17..b352e59839 100644 --- a/md/UBERON/40/UBERON_2001640.md +++ b/md/UBERON/40/UBERON_2001640.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001640 * *Label* = notochordal ossification - * *Definition* = Perichordal bone that surrounds the anterior tip of the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Perichordal bone that surrounds the anterior tip of the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001740.md b/md/UBERON/40/UBERON_2001740.md index 4a566e5486..b3f0765eb1 100644 --- a/md/UBERON/40/UBERON_2001740.md +++ b/md/UBERON/40/UBERON_2001740.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001740 * *Label* = posterior cranial fontanel - * *Definition* = Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * parietal fontanel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001740] - * posterior fontanel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001740] - * posterior fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001740] + * parietal fontanel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001740 ] + * posterior fontanel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001740 ] + * posterior fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001740 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001840.md b/md/UBERON/40/UBERON_2001840.md index 8d3a41ac6d..1c756cde0c 100644 --- a/md/UBERON/40/UBERON_2001840.md +++ b/md/UBERON/40/UBERON_2001840.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001840 * *Label* = tip - * *Definition* = Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * tips [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001840[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * tips [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001840, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2001940.md b/md/UBERON/40/UBERON_2001940.md index 39551ceeb9..0b583b2a4f 100644 --- a/md/UBERON/40/UBERON_2001940.md +++ b/md/UBERON/40/UBERON_2001940.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001940 * *Label* = vertebra 4-vertebra 5 joint - * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [vertebral element 4](../../UBERON/70/UBERON_2001170.md) and [core#connects](../../ts/core#connects.md) some [vertebral element 5](../../UBERON/32/UBERON_2001732.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2002040.md b/md/UBERON/40/UBERON_2002040.md index dd8025b6d5..9b9a4c40f2 100644 --- a/md/UBERON/40/UBERON_2002040.md +++ b/md/UBERON/40/UBERON_2002040.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002040 * *Label* = inter-coracoid joint - * *Definition* = Joint between the right and left coracoid bones of the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint between the right and left coracoid bones of the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2002240.md b/md/UBERON/40/UBERON_2002240.md index b5c7769f65..52ce93af8b 100644 --- a/md/UBERON/40/UBERON_2002240.md +++ b/md/UBERON/40/UBERON_2002240.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2005040.md b/md/UBERON/40/UBERON_2005040.md index 11a3e7cd50..d743cfc38e 100644 --- a/md/UBERON/40/UBERON_2005040.md +++ b/md/UBERON/40/UBERON_2005040.md @@ -6,7 +6,7 @@ ## Synonyms - * PLM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005040] + * PLM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005040 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_2005240.md b/md/UBERON/40/UBERON_2005240.md index c7ae287b49..3f49a51236 100644 --- a/md/UBERON/40/UBERON_2005240.md +++ b/md/UBERON/40/UBERON_2005240.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005240 * *Label* = obsolete Kolmer-Agduhr neuron - * *Definition* = Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-080825-21] + * *Definition* = Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-080825-21 ] ## Synonyms - * KA cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005240] - * Kolmer-Agduhr cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005240] + * KA cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005240 ] + * Kolmer-Agduhr cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005240 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0005007 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_2005340.md b/md/UBERON/40/UBERON_2005340.md index bbb58e091e..e04d2b3158 100644 --- a/md/UBERON/40/UBERON_2005340.md +++ b/md/UBERON/40/UBERON_2005340.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_2007040.md b/md/UBERON/40/UBERON_2007040.md index 3a1c066876..cd3cd708c1 100644 --- a/md/UBERON/40/UBERON_2007040.md +++ b/md/UBERON/40/UBERON_2007040.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3000440.md b/md/UBERON/40/UBERON_3000440.md index d7f945ea53..3cbf27edcb 100644 --- a/md/UBERON/40/UBERON_3000440.md +++ b/md/UBERON/40/UBERON_3000440.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000440 * *Label* = planum terminale - * *Definition* = Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Vertical plate of cartilage that is fused posterodorsally to the oblique cartilage and anteriorly to the lamina inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pars terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000440] - * terminal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000440] + * pars terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000440 ] + * terminal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000440 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3000540.md b/md/UBERON/40/UBERON_3000540.md index ab9541b639..dea44bf3ee 100644 --- a/md/UBERON/40/UBERON_3000540.md +++ b/md/UBERON/40/UBERON_3000540.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3000640.md b/md/UBERON/40/UBERON_3000640.md index 65e5b3ab58..b68c2e7fca 100644 --- a/md/UBERON/40/UBERON_3000640.md +++ b/md/UBERON/40/UBERON_3000640.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000640 * *Label* = arcus praeoccipitalis - * *Definition* = Skeletal structure that separates the inferior and superior perilymphatic foramina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Skeletal structure that separates the inferior and superior perilymphatic foramina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3000840.md b/md/UBERON/40/UBERON_3000840.md index a0047d36aa..6306afade6 100644 --- a/md/UBERON/40/UBERON_3000840.md +++ b/md/UBERON/40/UBERON_3000840.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000840 * *Label* = capitulum of radius - * *Definition* = Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3010240.md b/md/UBERON/40/UBERON_3010240.md index 9f8734267f..f9b328dcf5 100644 --- a/md/UBERON/40/UBERON_3010240.md +++ b/md/UBERON/40/UBERON_3010240.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010240 * *Label* = Nobelian rod - * *Definition* = Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/200] + * *Definition* = Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/200 ] ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3010740.md b/md/UBERON/40/UBERON_3010740.md index 5701fde8cf..c5ea472968 100644 --- a/md/UBERON/40/UBERON_3010740.md +++ b/md/UBERON/40/UBERON_3010740.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010740 * *Label* = ramus auricularis of the vagus nerve - * *Definition* = An afferent branch of the vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = An afferent branch of the vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_3010840.md b/md/UBERON/40/UBERON_3010840.md index 7a7fcf9875..315391b4be 100644 --- a/md/UBERON/40/UBERON_3010840.md +++ b/md/UBERON/40/UBERON_3010840.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010840 * *Label* = obsolete portion of cell substance - * *Definition* = Portion of organism substance located within a cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Portion of organism substance located within a cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms ## Cross-references - * CARO:0000063 [[rdf-schema#label](../../el/rdf-schema#label.md) = + portion of cell substance] + * CARO:0000063 [ [rdf-schema#label](../../el/rdf-schema#label.md) = portion of cell substance ] ## Subsets @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_3011040.md b/md/UBERON/40/UBERON_3011040.md index b1550cac2d..d1b3e212f2 100644 --- a/md/UBERON/40/UBERON_3011040.md +++ b/md/UBERON/40/UBERON_3011040.md @@ -6,7 +6,7 @@ ## Synonyms - * pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3011040] + * pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3011040 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_4000140.md b/md/UBERON/40/UBERON_4000140.md index 2f698a1634..57ae4ede82 100644 --- a/md/UBERON/40/UBERON_4000140.md +++ b/md/UBERON/40/UBERON_4000140.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000140 * *Label* = obsolete replacement ossification - * *Definition* = Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms - * indirect ossification [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000140] + * indirect ossification [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000140 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0036075 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/40/UBERON_4200040.md b/md/UBERON/40/UBERON_4200040.md index 5008af95e1..a4a7995aa8 100644 --- a/md/UBERON/40/UBERON_4200040.md +++ b/md/UBERON/40/UBERON_4200040.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/40/UBERON_4200140.md b/md/UBERON/40/UBERON_4200140.md index 70b44d2665..83999665b6 100644 --- a/md/UBERON/40/UBERON_4200140.md +++ b/md/UBERON/40/UBERON_4200140.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0000041.md b/md/UBERON/41/UBERON_0000041.md index 8fcaf1545c..c7959cc76e 100644 --- a/md/UBERON/41/UBERON_0000041.md +++ b/md/UBERON/41/UBERON_0000041.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000041 * *Label* = odontode scale - * *Definition* = Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VSAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000079[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VSAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000079, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. ## Synonyms * dermal denticle - * odontode scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000079] - * placoid scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * odontode scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000079 ] + * placoid scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP][Wikipedia:Dermal_denticle]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0000341.md b/md/UBERON/41/UBERON_0000341.md index 50c31a3a0e..8c99e1695a 100644 --- a/md/UBERON/41/UBERON_0000341.md +++ b/md/UBERON/41/UBERON_0000341.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000341 * *Label* = throat - * *Definition* = In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Throat] + * *Definition* = In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Throat ] * *Comment* = Taxon notes: The hyoid bone and the clavicle are the only bones located in the throat of mammals. ## Synonyms - * gula [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gula [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0000828 * FMA:228738 * OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA - * UMLS:C0230069 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Throat] + * UMLS:C0230069 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Throat ] * Wikipedia:Throat * http://upload.wikimedia.org/wikipedia/commons/1/16/Throat_Diagram.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Throat_Diagram.png/200px-Throat_Diagram.png @@ -38,8 +38,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0000941.md b/md/UBERON/41/UBERON_0000941.md index 424d5bb3fb..4574609a68 100644 --- a/md/UBERON/41/UBERON_0000941.md +++ b/md/UBERON/41/UBERON_0000941.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000941 * *Label* = cranial nerve II - * *Definition* = Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_nerve[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000435] + * *Definition* = Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_nerve, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000435 ] * *Comment* = Editor notes: A sensory tract that develops as an outpocketing of the brain - we classify as a cranial nerve as is traditional, but not strictly a nerve. AO notes: (relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon. Structure notes: We are consistent here with the FMA in considering CN-II continuous with the retina. Editor notes: - determine the precise relationship between CN II and the CNS ## Synonyms - * 02 optic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010345] + * 02 optic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010345 ] * cranial II * nervus opticus - * nervus opticus [II] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50863[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * optic II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001313] - * optic II nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001313] + * nervus opticus [II] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50863, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * optic II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001313 ] + * optic II nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001313 ] * optic nerve [II] * second cranial nerve - * 2n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1640[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * optic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50863[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000435[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * CN-II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000435] - * Onuf nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ON] - * nerve II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:289] - * olfactory nerve layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ON] - * optic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000435] + * 2n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1640, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * optic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50863, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000435, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * CN-II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000435 ] + * Onuf nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ON ] + * nerve II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:289 ] + * olfactory nerve layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ON ] + * optic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000435 ] ## Cross-references @@ -42,12 +42,12 @@ * MA:0001097 * MESH:A08.800.800.120.680 * NIF_GrossAnatomy:birnlex_1640 - * NeuroNames:289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1640] + * NeuroNames:289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1640 ] * OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA * SCTID:180938001 * TAO:0000435 - * UMLS:C0029130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1640] - * UMLS:C0029130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Nerve] + * UMLS:C0029130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1640 ] + * UMLS:C0029130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Nerve ] * VHOG:0000543 * Wikipedia:Optic_nerve * XAO:0000188 @@ -74,7 +74,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [optic chiasma](../../UBERON/59/UBERON_0000959.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [retina](../../UBERON/66/UBERON_0000966.md) and [cranial nerve](../../UBERON/85/UBERON_0001785.md) ## Other Logical Axioms @@ -85,8 +85,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001041.md b/md/UBERON/41/UBERON_0001041.md index 7881c6aae1..c8078f50fa 100644 --- a/md/UBERON/41/UBERON_0001041.md +++ b/md/UBERON/41/UBERON_0001041.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001041 * *Label* = foregut - * *Definition* = Anterior subdivision of a digestive tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Anterior subdivision of a digestive tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Editor notes: Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. We may explicitly make this a developmental class (as it appears to be in FMA) ## Synonyms - * praeenteron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foregut[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proenteron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foregut[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * praeenteron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foregut, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proenteron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foregut, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001526 * SCTID:361409009 * TGMA:0001014 - * UMLS:C0231051 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foregut] + * UMLS:C0231051 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foregut ] * VHOG:0000285 * Wikipedia:Foregut * XAO:0000232 @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior portion of the primitive digestive tube of the embryo that lies cephalic to the junction of the yolk stalk, consists of endodermal tissue, and gives rise to the the pharynx, lower respiratory system, esophagus, stomach, duodenum proximal to the biliary tract, liver, pancreas, biliary tract, and gall bladder. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001141.md b/md/UBERON/41/UBERON_0001141.md index 65c7b3b817..ef8ef46bc7 100644 --- a/md/UBERON/41/UBERON_0001141.md +++ b/md/UBERON/41/UBERON_0001141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001141 * *Label* = right renal vein - * *Definition* = A renal vein that drains the right kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A renal vein that drains the right kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -14,7 +14,7 @@ * MA:0002212 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA * SCTID:116357001 - * UMLS:C0508000 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Renal_Vein] + * UMLS:C0508000 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Renal_Vein ] * ncithesaurus:Right_Renal_Vein ## Subsets @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [right kidney](../../UBERON/39/UBERON_0004539.md) and [renal vein](../../UBERON/40/UBERON_0001140.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vein that drains blood from the right kidney into the inferior vena cava[ncithesaurus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001241.md b/md/UBERON/41/UBERON_0001241.md index 4cd2ac38db..ddacb2e35b 100644 --- a/md/UBERON/41/UBERON_0001241.md +++ b/md/UBERON/41/UBERON_0001241.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001241 * *Label* = crypt of Lieberkuhn of small intestine - * *Definition* = A crypt of lieberkuhn that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A crypt of lieberkuhn that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * crypt of lieberkuhn of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * crypt of lieberkuhn of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinal gland of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinal gland of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lieberkuhn crypt of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lieberkuhn crypt of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel crypt of lieberkuhn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel intestinal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel lieberkuhn crypt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * crypt of lieberkuhn of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * crypt of lieberkuhn of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinal gland of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinal gland of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lieberkuhn crypt of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lieberkuhn crypt of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel crypt of lieberkuhn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel intestinal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel lieberkuhn crypt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal crypt of Lieberkuhn * small intestine crypt of Lieberkuhn - * small intestine crypt of lieberkuhn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine intestinal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine lieberkuhn crypt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine crypt of lieberkuhn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine intestinal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine lieberkuhn crypt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:15693 * MA:0001552 * SCTID:52688008 - * UMLS:C0227267 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn] + * UMLS:C0227267 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn ] * ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001341.md b/md/UBERON/41/UBERON_0001341.md index 840496d115..50815f2dc0 100644 --- a/md/UBERON/41/UBERON_0001341.md +++ b/md/UBERON/41/UBERON_0001341.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001341 * *Label* = lesser sac - * *Definition* = The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_sac] + * *Definition* = The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_sac ] * *Comment* = AO notes: classified as a cavity in EHDAA2, so this truly corresponds to FMA 'Cavity of lesser sac' - we hedge for now; todo - treat same as greater sac ## Synonyms - * bursa omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19800[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bursa omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19800, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * omental bursa ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:18458 * FMA:19800 * MA:0000445 - * UMLS:C0230212 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Omental_Bursa] + * UMLS:C0230212 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Omental_Bursa ] * VHOG:0000458 * Wikipedia:Lesser_sac * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Peritoneum.svg/200px-Peritoneum.svg.png @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The lesser sac of the peritoneum. Part of the peritoneal cavity behind the liver, lesser omentum and stomach. It lies across the transverse mesocolon and extends into the greater omentum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001441.md b/md/UBERON/41/UBERON_0001441.md index c02d7a39e5..b5f79bdb88 100644 --- a/md/UBERON/41/UBERON_0001441.md +++ b/md/UBERON/41/UBERON_0001441.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001441 * *Label* = hindlimb skeleton - * *Definition* = Subdivision of skeleton consisting of all skeletal elements in an hindlimb region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton consisting of all skeletal elements in an hindlimb region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = TOOD - find a home for: FMA:24140 ## Synonyms * bones of lower limb - * free lower limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24144] - * hind limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003062] - * hind-limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000152] - * hindlimb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001255] + * free lower limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24144 ] + * hind limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003062 ] + * hind-limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000152 ] + * hindlimb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001255 ] * lower limb skeleton - * ossa membri inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24140[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ossa membri inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24140, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * set of bones of lower limb - * skeleton of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24144] - * skeleton of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24140] + * skeleton of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24144 ] + * skeleton of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24140 ] ## Cross-references @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001541.md b/md/UBERON/41/UBERON_0001541.md index f34816eba7..ef1fe87c54 100644 --- a/md/UBERON/41/UBERON_0001541.md +++ b/md/UBERON/41/UBERON_0001541.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001541 * *Label* = medial plantar artery - * *Definition* = The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_plantar_artery] + * *Definition* = The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_plantar_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * a. plantaris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_plantar_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * a. plantaris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_plantar_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:43925 * MA:0001997 * SCTID:181360004 - * UMLS:C0226479 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Plantar_Artery] + * UMLS:C0226479 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Plantar_Artery ] * Wikipedia:Medial_plantar_artery * http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001641.md b/md/UBERON/41/UBERON_0001641.md index 931182de09..89c82bd05a 100644 --- a/md/UBERON/41/UBERON_0001641.md +++ b/md/UBERON/41/UBERON_0001641.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001641 * *Label* = transverse sinus - * *Definition* = The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diplo. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses] + * *Definition* = The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diplo. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses ] * *Comment* = todo - check su ## Synonyms - * sinus transversus durae matris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * groove for right and left transverse sinuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses] - * lateral sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50763] - * sinus transversus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses] - * transverse sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses] - * transverse sinus vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_sinuses] + * sinus transversus durae matris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * groove for right and left transverse sinuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses ] + * lateral sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50763 ] + * sinus transversus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses ] + * transverse sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses ] + * transverse sinus vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_sinuses ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001741.md b/md/UBERON/41/UBERON_0001741.md index 52fd68fede..a28c303fa8 100644 --- a/md/UBERON/41/UBERON_0001741.md +++ b/md/UBERON/41/UBERON_0001741.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001741 * *Label* = corniculate cartilage - * *Definition* = The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corniculate_cartilages] + * *Definition* = The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corniculate_cartilages ] ## Synonyms * Santorini's cartilage * cartilage of Santorini - * cartilagines corniculata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corniculate_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cartilagines corniculata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corniculate_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:55110 * MA:0001885 * SCTID:278989005 - * UMLS:C0225556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corniculate_Cartilage] + * UMLS:C0225556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corniculate_Cartilage ] * Wikipedia:Corniculate_cartilages * http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001841.md b/md/UBERON/41/UBERON_0001841.md index be9d22ddaa..e2fb41158c 100644 --- a/md/UBERON/41/UBERON_0001841.md +++ b/md/UBERON/41/UBERON_0001841.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001841 * *Label* = anterior semicircular canal - * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_semicircular_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_semicircular_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,7 +11,7 @@ * superior semicircular canal * anterior semicircular canals * anterior semicircular duct - * canalis semircularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000058] + * canalis semircularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000058 ] * rostral vertical semicircular canal ## Cross-references @@ -24,7 +24,7 @@ * MA:0001207 * SCTID:279764002 * TAO:0000314 - * UMLS:C1288332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Semicircular_Canal] + * UMLS:C1288332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Semicircular_Canal ] * Wikipedia:Anterior_semicircular_canal * ZFA:0000314 * http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from anterior semicircular canal primordium (TAO:0000469)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0001941.md b/md/UBERON/41/UBERON_0001941.md index 3ce18df2cc..3f0c5ae823 100644 --- a/md/UBERON/41/UBERON_0001941.md +++ b/md/UBERON/41/UBERON_0001941.md @@ -8,11 +8,11 @@ ## Synonyms * lateral habenula - * nucleus habenulae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1438] - * nucleus habenularis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1438] - * nucleus habenularis lateralis epithalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1438] - * LHb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1438[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral habenula (Nissl) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:295] + * nucleus habenulae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1438 ] + * nucleus habenularis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1438 ] + * nucleus habenularis lateralis epithalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1438 ] + * LHb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1438, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral habenula (Nissl) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:295 ] ## Cross-references @@ -25,9 +25,9 @@ * FMA:62372 * MA:0000831 * NIF_GrossAnatomy:birnlex_1438 - * NeuroNames:295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1438] + * NeuroNames:295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1438 ] * SCTID:361538005 - * UMLS:C0228390 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1438] + * UMLS:C0228390 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1438 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002041.md b/md/UBERON/41/UBERON_0002041.md index d40c204baa..80a7071780 100644 --- a/md/UBERON/41/UBERON_0002041.md +++ b/md/UBERON/41/UBERON_0002041.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002141.md b/md/UBERON/41/UBERON_0002141.md index c75e69cf9d..7f8d059157 100644 --- a/md/UBERON/41/UBERON_0002141.md +++ b/md/UBERON/41/UBERON_0002141.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002141 * *Label* = parvocellular oculomotor nucleus - * *Definition* = The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Edinger-westphal_nucleus] + * *Definition* = The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Edinger-westphal_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * accessory oculomotor nucleus * edinger-westphal nucleus - * nucleus Edinger-Westphal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000244] + * nucleus Edinger-Westphal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000244 ] * oculomotor nucleus, parvocellular part - * PC3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_822[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * edinger-Westphal nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498] - * nuclei accessorii nervi oculomtorii (Edinger-Westphal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus Edinger Westphal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus Westphal-Edinger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi oculomotorii Edinger-Westphal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi oculomotorii parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus rostralis nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oculomotor nucleus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:498] + * PC3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_822, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * edinger-Westphal nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498 ] + * nuclei accessorii nervi oculomtorii (Edinger-Westphal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus Edinger Westphal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus Westphal-Edinger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi oculomotorii Edinger-Westphal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi oculomotorii parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus rostralis nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oculomotor nucleus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:498 ] ## Cross-references @@ -31,10 +31,10 @@ * FMA:72424 * MA:0001071 * NIF_GrossAnatomy:birnlex_822 - * NeuroNames:498 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_822] + * NeuroNames:498 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_822 ] * SCTID:62088007 * TAO:0000244 - * UMLS:C0228416 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_822] + * UMLS:C0228416 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_822 ] * Wikipedia:Edinger-westphal_nucleus * ZFA:0000244 @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002241.md b/md/UBERON/41/UBERON_0002241.md index c1e0d36cfb..2ee9e01610 100644 --- a/md/UBERON/41/UBERON_0002241.md +++ b/md/UBERON/41/UBERON_0002241.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002241 * *Label* = chondrocranium - * *Definition* = Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chondrocranium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/chondrocranium] + * *Definition* = Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chondrocranium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/chondrocranium ] * *Comment* = Editor/AO notes: we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal). Taxon notes: covers the brain dorsally in chondrichthyans ## Synonyms - * calvarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000317] - * neurocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000317[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * calvarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000317 ] + * neurocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000317, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -28,7 +28,7 @@ ## Superclasses * [primary subdivision of cranial skeletal system](../../UBERON/59/UBERON_0011159.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) ## Equivalencies @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = chondrocranial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002341.md b/md/UBERON/41/UBERON_0002341.md index a6f0e40238..13f95bddb9 100644 --- a/md/UBERON/41/UBERON_0002341.md +++ b/md/UBERON/41/UBERON_0002341.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002341 * *Label* = epithelium of segmental bronchus - * *Definition* = An epithelium that is part of a segmental bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a segmental bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of segmental bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of segmental bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * segmental bronchial epithelium - * segmental bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * segmental bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * segmental bronchus epithelium - * tertiary bronchus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * tertiary bronchus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002441.md b/md/UBERON/41/UBERON_0002441.md index 9229953a69..0ed37c9218 100644 --- a/md/UBERON/41/UBERON_0002441.md +++ b/md/UBERON/41/UBERON_0002441.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002441 * *Label* = cervicothoracic ganglion - * *Definition* = The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervicothoracic_ganglion] + * *Definition* = The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervicothoracic_ganglion ] ## Synonyms * cervicothoracic sympathetic ganglion - * ganglion stellatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion stellatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stellate ganglion ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002541.md b/md/UBERON/41/UBERON_0002541.md index 65b4ad6234..91cdce9b7a 100644 --- a/md/UBERON/41/UBERON_0002541.md +++ b/md/UBERON/41/UBERON_0002541.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002541 * *Label* = germ ring - * *Definition* = The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring] + * *Definition* = The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring ] * *Comment* = todo - check timing of appearance and disappearance - check relationship with primitive streak. he blastopore lips in amphibians appear to have the equivalent function of the germ ring in zebrafish (ES) ## Synonyms @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Embryonic structure that forms as a thickened annulus at the blastoderm rim. The germ ring is thickened because it is the involuting margin of the blastoderm[ZFIN:ZDB-PUB-961014-576]. * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_40674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002641.md b/md/UBERON/41/UBERON_0002641.md index 5016aa4685..f20fb90e53 100644 --- a/md/UBERON/41/UBERON_0002641.md +++ b/md/UBERON/41/UBERON_0002641.md @@ -6,14 +6,14 @@ ## Synonyms - * anterior pulvinar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62180] - * nucleus pulvinaris anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62180[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus pulvinaris oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1239] - * nucleus pulvinaris oralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1239] - * oral nuclear group of pulvinar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62180] - * oral part of pulvinar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62180] - * oral portion of pulvinar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62180] - * OPul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * anterior pulvinar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62180 ] + * nucleus pulvinaris anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62180, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus pulvinaris oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1239 ] + * nucleus pulvinaris oralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1239 ] + * oral nuclear group of pulvinar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62180 ] + * oral part of pulvinar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62180 ] + * oral portion of pulvinar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62180 ] + * OPul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -22,8 +22,8 @@ * BM:Die-Th-Pl-Pla * FMA:62180 * NIF_GrossAnatomy:birnlex_1239 - * NeuroNames:329 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1239] - * UMLS:C0262299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1239] + * NeuroNames:329 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1239 ] + * UMLS:C0262299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1239 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002741.md b/md/UBERON/41/UBERON_0002741.md index b40e8a1308..263b2c2cab 100644 --- a/md/UBERON/41/UBERON_0002741.md +++ b/md/UBERON/41/UBERON_0002741.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002741 * *Label* = diagonal band of Broca - * *Definition* = A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1551] + * *Definition* = A white fibre bundle descending in the precommissural septum toward the base of the forebrain, immediately rostral to the lamina terminalis; at the base, the bundle turns in the caudolateral direction; traveling through the ventral substantia innominata alongside the optic tract, it fades before reaching the amygdala. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1551 ] ## Synonyms - * broca's diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61973] - * broca's diagonal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61973] - * diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61973] + * broca's diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61973 ] + * broca's diagonal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61973 ] + * diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61973 ] * diagonal band of Broca - * diagonal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61973] - * olfactory fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61973] + * diagonal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61973 ] + * olfactory fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61973 ] * olfactory radiations of zuckerkandl - * band of Broca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002445] - * bandaletta diagonalis (Broca) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002445] - * bandeletta diagonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * diagonal band(Broca) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:db] - * fasciculus diagonalis Brocae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus olfactorius (hippocampi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus olfactorius cornu Ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus septo-amygdalicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus diagonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus diagonalis rhinencephli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stria diagonalis (Broca) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002445] - * stria diagonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002445] - * stria diagonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Diagonal_band_of_Broca[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * band of Broca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002445 ] + * bandaletta diagonalis (Broca) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002445 ] + * bandeletta diagonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * diagonal band(Broca) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:db ] + * fasciculus diagonalis Brocae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus olfactorius (hippocampi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus olfactorius cornu Ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus septo-amygdalicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus diagonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus diagonalis rhinencephli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stria diagonalis (Broca) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002445 ] + * stria diagonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002445 ] + * stria diagonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Diagonal_band_of_Broca, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,8 @@ * GAID:684 * MESH:A08.186.211.730.885.380 * NIF_GrossAnatomy:birnlex_1551 - * NeuroNames:285 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1551] - * UMLS:C0175226 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1551] + * NeuroNames:285 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1551 ] + * UMLS:C0175226 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1551 ] * Wikipedia:Diagonal_band_of_Broca * http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002841.md b/md/UBERON/41/UBERON_0002841.md index 1224b0c501..3628aa0d4b 100644 --- a/md/UBERON/41/UBERON_0002841.md +++ b/md/UBERON/41/UBERON_0002841.md @@ -6,15 +6,15 @@ ## Synonyms - * fourth cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6317] - * fourth cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6317] + * fourth cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6317 ] + * fourth cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6317 ] ## Cross-references * EMAPA:25157 * FMA:6317 * NIF_GrossAnatomy:birnlex_2606 - * UMLS:C0501695 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2606] + * UMLS:C0501695 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2606 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0002941.md b/md/UBERON/41/UBERON_0002941.md index 4f4bc1c5f9..bbdea02525 100644 --- a/md/UBERON/41/UBERON_0002941.md +++ b/md/UBERON/41/UBERON_0002941.md @@ -6,20 +6,20 @@ ## Synonyms - * red nuclear capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72450] - * cr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_732[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * capsula nuclei rubris tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:508[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * capsule of the red nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:508] - * nucleus ruber, capsula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:508[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * red nuclear capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72450 ] + * cr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_732, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * capsula nuclei rubris tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:508, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * capsule of the red nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:508 ] + * nucleus ruber, capsula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:508, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:cr * FMA:72450 * NIF_GrossAnatomy:birnlex_732 - * NeuroNames:508 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_732] + * NeuroNames:508 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_732 ] * SCTID:369245007 - * UMLS:C0152369 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_732] + * UMLS:C0152369 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_732 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003041.md b/md/UBERON/41/UBERON_0003041.md index 3f649edbd5..361f4ba8f7 100644 --- a/md/UBERON/41/UBERON_0003041.md +++ b/md/UBERON/41/UBERON_0003041.md @@ -6,18 +6,18 @@ ## Synonyms - * central part of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72501] - * trigeminal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72501] - * trigeminal nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72501] - * fibrae nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:607[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central part of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72501 ] + * trigeminal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72501 ] + * trigeminal nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72501 ] + * fibrae nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:607, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:5nf * FMA:72501 * NIF_GrossAnatomy:birnlex_974 - * NeuroNames:607 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_974] - * UMLS:C0175452 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_974] + * NeuroNames:607 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_974 ] + * UMLS:C0175452 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_974 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003141.md b/md/UBERON/41/UBERON_0003141.md index 79f0e0f101..6b4c330f38 100644 --- a/md/UBERON/41/UBERON_0003141.md +++ b/md/UBERON/41/UBERON_0003141.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00001746 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000460 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003141 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_0003241.md b/md/UBERON/41/UBERON_0003241.md index a57273df64..98dad8ac9c 100644 --- a/md/UBERON/41/UBERON_0003241.md +++ b/md/UBERON/41/UBERON_0003241.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003241 * *Label* = epithelium of utricle - * *Definition* = An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a utricle of membranous labyrinth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check relationships w.r.t macula ## Synonyms - * epithelial tissue of membranous labyrinth utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of utricle of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of utriculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of membranous labyrinth utricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of utricle of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of utriculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous labyrinth utricle epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous labyrinth utricle epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle of membranous labyrinth epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utricle of membranous labyrinth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utriculus (labyrinthus vestibularis) epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * utriculus (labyrinthus vestibularis) epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of macula of utricle of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75604] + * epithelial tissue of membranous labyrinth utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of utricle of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of utriculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of membranous labyrinth utricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of utricle of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of utriculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous labyrinth utricle epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous labyrinth utricle epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle of membranous labyrinth epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utricle of membranous labyrinth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utriculus (labyrinthus vestibularis) epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * utriculus (labyrinthus vestibularis) epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of macula of utricle of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75604 ] ## Cross-references @@ -52,7 +52,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [utricle of membranous labyrinth](../../UBERON/53/UBERON_0001853.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003341.md b/md/UBERON/41/UBERON_0003341.md index de36b68e61..9efa71959c 100644 --- a/md/UBERON/41/UBERON_0003341.md +++ b/md/UBERON/41/UBERON_0003341.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003341 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_0003441.md b/md/UBERON/41/UBERON_0003441.md index 54aa48ba9c..e310dc0866 100644 --- a/md/UBERON/41/UBERON_0003441.md +++ b/md/UBERON/41/UBERON_0003441.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003441 * *Label* = forelimb nerve - * *Definition* = A nerve that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003541.md b/md/UBERON/41/UBERON_0003541.md index c6640d8ee7..2de74f8ff6 100644 --- a/md/UBERON/41/UBERON_0003541.md +++ b/md/UBERON/41/UBERON_0003541.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003541 * *Label* = left lung terminal bronchiole - * *Definition* = A terminal bronchiole that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A terminal bronchiole that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus terminalis of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus terminalis of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001780 - * UMLS:C1708675 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung_Terminal_Bronchiole] + * UMLS:C1708675 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung_Terminal_Bronchiole ] * ncithesaurus:Left_Lung_Terminal_Bronchiole ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [terminal bronchiole](../../UBERON/87/UBERON_0002187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003641.md b/md/UBERON/41/UBERON_0003641.md index 708a0ca577..a600ed749b 100644 --- a/md/UBERON/41/UBERON_0003641.md +++ b/md/UBERON/41/UBERON_0003641.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003641 * *Label* = pedal digit 2 phalanx - * *Definition* = A phalanx that is part of a foot digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a foot digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit long bone of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001382] - * hind limb digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * long bone of digit of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32899] - * second toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32899] - * foot digit 2 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit long bone of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001382 ] + * hind limb digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * long bone of digit of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32899 ] + * second toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32899 ] + * foot digit 2 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:32899 * MA:0001382 * SCTID:361800004 - * UMLS:C1708082 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_2_Phalanx] + * UMLS:C1708082 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_2_Phalanx ] * ncithesaurus:Foot_Digit_2_Phalanx ## Subsets @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003841.md b/md/UBERON/41/UBERON_0003841.md index 61db9c47dd..f699b36d45 100644 --- a/md/UBERON/41/UBERON_0003841.md +++ b/md/UBERON/41/UBERON_0003841.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003841 * *Label* = autopod joint - * *Definition* = A limb joint that is part of an autopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb joint that is part of an autopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * autopod joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment joint of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of limb of distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb joint of distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * paw joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002715] + * autopod joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment joint of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of limb of distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb joint of distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * paw joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002715 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [autopod region](../../UBERON/70/UBERON_0002470.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0003941.md b/md/UBERON/41/UBERON_0003941.md index f037d5aa59..fbb74869ab 100644 --- a/md/UBERON/41/UBERON_0003941.md +++ b/md/UBERON/41/UBERON_0003941.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003941 * *Label* = cerebellum anterior vermis - * *Definition* = the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000867] + * *Definition* = the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000867 ] ## Synonyms - * anterior cerebellum vermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002969] - * anterior vermis of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72255] - * part of vermal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72255] - * vermis of anterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72255] - * vermis of anterior lobe of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72255] - * vermis of the anterior lobe of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1185] - * ventral anterior-lateral complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VAL] - * ventral anterolateral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VAL] + * anterior cerebellum vermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002969 ] + * anterior vermis of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72255 ] + * part of vermal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72255 ] + * vermis of anterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72255 ] + * vermis of anterior lobe of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72255 ] + * vermis of the anterior lobe of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1185 ] + * ventral anterior-lateral complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VAL ] + * ventral anterolateral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VAL ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellar vermis](../../UBERON/20/UBERON_0004720.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior lobe of cerebellum](../../UBERON/31/UBERON_0002131.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004041.md b/md/UBERON/41/UBERON_0004041.md index 6d8fa41f4c..e092451aaa 100644 --- a/md/UBERON/41/UBERON_0004041.md +++ b/md/UBERON/41/UBERON_0004041.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004041 * *Label* = spleen primary B follicle - * *Definition* = the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008471] + * *Definition* = the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008471 ] * *Comment* = AO notes - FMA:15843 is classified as primary follicle so it belongs here ## Synonyms - * primary spleen B cell follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * primary spleen B cell follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) and [primary nodular lymphoid tissue](../../UBERON/22/UBERON_0010422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004141.md b/md/UBERON/41/UBERON_0004141.md index a27306f2e2..32cde82878 100644 --- a/md/UBERON/41/UBERON_0004141.md +++ b/md/UBERON/41/UBERON_0004141.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004141 * *Label* = heart tube - * *Definition* = An epithelial tube that will give rise to the mature heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003143[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_heart] + * *Definition* = An epithelial tube that will give rise to the mature heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003143, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_heart ] ## Synonyms - * embryonic heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003143] - * endocardial heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * endocardial tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000337] + * embryonic heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003143 ] + * endocardial heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * endocardial tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000337 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004241.md b/md/UBERON/41/UBERON_0004241.md index 4a3fccb90f..07490eeccc 100644 --- a/md/UBERON/41/UBERON_0004241.md +++ b/md/UBERON/41/UBERON_0004241.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004241 * *Label* = main bronchus smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus principalis involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -53,15 +53,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004341.md b/md/UBERON/41/UBERON_0004341.md index 688b9c5f7a..9b90ea3509 100644 --- a/md/UBERON/41/UBERON_0004341.md +++ b/md/UBERON/41/UBERON_0004341.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004341 * *Label* = primitive streak - * *Definition* = The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002231[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_streak] + * *Definition* = The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002231, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_streak ] * *Comment* = AO notes: VHOG includes a very broad grouping here based on PMID:9609826 ## Synonyms - * primitive streak - blastopore - germ ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001202] + * primitive streak - blastopore - germ ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001202 ] ## Cross-references @@ -16,7 +16,7 @@ * EHDAA:185 * EMAPA:16072 * SCTID:361438007 - * UMLS:C0033153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primitive_Streak] + * UMLS:C0033153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primitive_Streak ] * VHOG:0001202 * Wikipedia:Primitive_streak * http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the blastopore equivalent of chordates (germ ring in fish, marginal zone/blastopore lip in frog and node/primitive streak in chick and mouse) (...) (reference 1); Indeed, the primitive streak has been considered the homologue of the blastopore since the 1870s (reference 2).[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_32443 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004441.md b/md/UBERON/41/UBERON_0004441.md index 667de6912e..3a4a2cd850 100644 --- a/md/UBERON/41/UBERON_0004441.md +++ b/md/UBERON/41/UBERON_0004441.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004441 * *Label* = proximal epiphysis of proximal phalanx of manual digit 3 - * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of proximal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37511] - * base of proximal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37511] - * base of proximal phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37511] - * base of proximal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37511] - * proximal epiphysis of proximal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of proximal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37511 ] + * base of proximal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37511 ] + * base of proximal phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37511 ] + * base of proximal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37511 ] + * proximal epiphysis of proximal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manual digit 3](../../UBERON/29/UBERON_0004329.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004641.md b/md/UBERON/41/UBERON_0004641.md index 2f5a63786e..95eb9afa73 100644 --- a/md/UBERON/41/UBERON_0004641.md +++ b/md/UBERON/41/UBERON_0004641.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004641 * *Label* = spleen capsule - * *Definition* = A capsule that is part of a spleen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capsule that is part of a spleen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Malpighian capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] - * capsule of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] - * fibroelastic coat of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] - * fibrous capsule of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] - * splenic capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] - * tunica fibrosa (splen)(lien) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15849] + * Malpighian capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] + * capsule of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] + * fibroelastic coat of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] + * fibrous capsule of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] + * splenic capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] + * tunica fibrosa (splen)(lien) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15849 ] ## Cross-references * FMA:15849 * MA:0000753 * SCTID:329635002 - * UMLS:C0229681 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Capsule] + * UMLS:C0229681 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Capsule ] * ncithesaurus:Splenic_Capsule ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004741.md b/md/UBERON/41/UBERON_0004741.md index de4d3d4398..1056fb2ecb 100644 --- a/md/UBERON/41/UBERON_0004741.md +++ b/md/UBERON/41/UBERON_0004741.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004741 * *Label* = cleithrum - * *Definition* = Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000187[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cleithrum] + * *Definition* = Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000187, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cleithrum ] * *Comment* = Taxon notes: Found in some early members of Chelonia (e.g. Triassochelys), but missing in all later forms.[VSAO] ## Synonyms - * cleithra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000184[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * cleithrum bone [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * cleithrum@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000184] - * clithra@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000184] - * clithrum@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000184] + * cleithra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000184, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * cleithrum bone [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * cleithrum@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000184 ] + * clithra@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000184 ] + * clithrum@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000184 ] ## Cross-references @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired bones of intramembranous origin. Each cleithrum extends medially from a point near the suprascapular-scapular articulation to invest the anterior margin of the suprascapula, and occasionoally it may extend to the dorsal (medial) surface. Usually, this bone is bifurcate.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of scapular area (AAO:0000935)[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Commonly, the cleithrum is a large, well-ossified bone provided with a dorsal and a ventral arm that form an angle of about 90 or a few more degrees. The dorsal arm may end in a sharp or spine-like process to articulate with the supracleithrum. At the confluence of both arms the bone presents a blade extending postero-ventrally and that may have different development among fishes. The anterior edge of the cleithrum is usually thick and may produce a medial plate of different degrees of development.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0004941.md b/md/UBERON/41/UBERON_0004941.md index 5bf2738e83..62f23afb65 100644 --- a/md/UBERON/41/UBERON_0004941.md +++ b/md/UBERON/41/UBERON_0004941.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004941 * *Label* = submucosa of right hepatic duct - * *Definition* = A submucosa that is part of a right hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a right hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right hepatic duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right hepatic ductal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18015] + * right hepatic duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right hepatic ductal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18015 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right hepatic duct](../../UBERON/76/UBERON_0001176.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005041.md b/md/UBERON/41/UBERON_0005041.md index 35013fad9d..397aefe412 100644 --- a/md/UBERON/41/UBERON_0005041.md +++ b/md/UBERON/41/UBERON_0005041.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005041 * *Label* = mucosa of respiratory bronchiole - * *Definition* = A mucosa that is part of a respiratory bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a respiratory bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus respiratorius mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus respiratorius mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus respiratorius mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus respiratorius organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of respiratory bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of respiratory bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of respiratory bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus respiratorius mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus respiratorius mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus respiratorius mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus respiratorius organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of respiratory bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of respiratory bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of respiratory bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory bronchiole](../../UBERON/88/UBERON_0002188.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005141.md b/md/UBERON/41/UBERON_0005141.md index 0183545e54..f66b2193e3 100644 --- a/md/UBERON/41/UBERON_0005141.md +++ b/md/UBERON/41/UBERON_0005141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005141 * *Label* = metanephric short descending thin limb - * *Definition* = The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072271] + * *Definition* = The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072271 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [short descending thin limb](../../UBERON/99/UBERON_0005099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005241.md b/md/UBERON/41/UBERON_0005241.md index 1fffa47fc2..f91c73283d 100644 --- a/md/UBERON/41/UBERON_0005241.md +++ b/md/UBERON/41/UBERON_0005241.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005241 * *Label* = obsolete apical ectodermal ridge forelimb - * *Definition* = A forelimb that is part of an apical ectodermal ridge [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A forelimb that is part of an apical ectodermal ridge [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0001064 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005241 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_0005341.md b/md/UBERON/41/UBERON_0005341.md index 5b8788fcc6..382bb1362f 100644 --- a/md/UBERON/41/UBERON_0005341.md +++ b/md/UBERON/41/UBERON_0005341.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005341 * *Label* = ventral commissure - * *Definition* = the fiber tracts that connect the ventral region of the two cerebral hemispheres and span the longitudinal fissure, including the anterior and the habenular commissures[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008220] + * *Definition* = the fiber tracts that connect the ventral region of the two cerebral hemispheres and span the longitudinal fissure, including the anterior and the habenular commissures[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008220 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005441.md b/md/UBERON/41/UBERON_0005441.md index 04db05aaf5..b14bdb06d6 100644 --- a/md/UBERON/41/UBERON_0005441.md +++ b/md/UBERON/41/UBERON_0005441.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005441 * *Label* = external intercostal muscle - * *Definition* = The Intercostales externi (External intercostals) are eleven in number on either side. They extend from the tubercles of the ribs behind, to the cartilages of the ribs in front, where they end in thin membranes, the anterior intercostal membranes, which are continued forward to the sternum. Each arises from the lower border of a rib, and is inserted into the upper border of the rib below. In the two lower spaces they extend to the ends of the cartilages, and in the upper two or three spaces they do not quite reach the ends of the ribs. They are thicker than the Intercostales interni, and their fibers are directed obliquely downward and laterally on the back of the thorax, and downward, forward, and medially on the front (the example is often used of sticking one's hands in their pocket and noting the direction of the fingers pointing downward and medially). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] + * *Definition* = The Intercostales externi (External intercostals) are eleven in number on either side. They extend from the tubercles of the ribs behind, to the cartilages of the ribs in front, where they end in thin membranes, the anterior intercostal membranes, which are continued forward to the sternum. Each arises from the lower border of a rib, and is inserted into the upper border of the rib below. In the two lower spaces they extend to the ends of the cartilages, and in the upper two or three spaces they do not quite reach the ends of the ribs. They are thicker than the Intercostales interni, and their fibers are directed obliquely downward and laterally on the back of the thorax, and downward, forward, and medially on the front (the example is often used of sticking one's hands in their pocket and noting the direction of the fingers pointing downward and medially). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] ## Synonyms - * intercostales externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002325] - * external intercostal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * external intercostals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostal muscle external layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002325] - * intercostales externi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostales externi muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostales externi muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostalis externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostals external [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * intercostals external muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] - * musculi intercostales externi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi intercostales externi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_intercostal_muscles] + * intercostales externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002325 ] + * external intercostal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * external intercostals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostal muscle external layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002325 ] + * intercostales externi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostales externi muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostales externi muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostalis externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostals external [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * intercostals external muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * musculi intercostales externi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles ] + * musculi intercostales externi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_intercostal_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:9756 * MA:0002325 * SCTID:244878003 - * UMLS:C1744535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Intercostal_Muscle] + * UMLS:C1744535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Intercostal_Muscle ] * VHOG:0000904 * Wikipedia:External_intercostal_muscles * http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005641.md b/md/UBERON/41/UBERON_0005641.md index e4aa1305d1..c128994baf 100644 --- a/md/UBERON/41/UBERON_0005641.md +++ b/md/UBERON/41/UBERON_0005641.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005641 * *Label* = otocyst epithelium - * *Definition* = An epithelium that is part of a ear vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a ear vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ear vesicle](../../UBERON/51/UBERON_0003051.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005741.md b/md/UBERON/41/UBERON_0005741.md index 835f94d6c6..bbb676f65b 100644 --- a/md/UBERON/41/UBERON_0005741.md +++ b/md/UBERON/41/UBERON_0005741.md @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001297 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005741 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_0005841.md b/md/UBERON/41/UBERON_0005841.md index 7d15104833..f3b34d71ec 100644 --- a/md/UBERON/41/UBERON_0005841.md +++ b/md/UBERON/41/UBERON_0005841.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005841 * *Label* = cervical spinal cord dorsal column - * *Definition* = A subdivision of spinal cord dorsal column that is part of a cervical spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord dorsal column that is part of a cervical spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cervical segment of dorsal funiculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258176] - * cervical spinal cord posterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_736] - * dorsal funiculus of cervical segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258176] - * dorsal white column of cervical segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258176] + * cervical segment of dorsal funiculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258176 ] + * cervical spinal cord posterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_736 ] + * dorsal funiculus of cervical segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258176 ] + * dorsal white column of cervical segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258176 ] ## Cross-references * FMA:258176 * NIF_GrossAnatomy:birnlex_736 - * UMLS:C0228617 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_736] + * UMLS:C0228617 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_736 ] ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [subdivision of spinal cord dorsal column](../../UBERON/79/UBERON_0006079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0005941.md b/md/UBERON/41/UBERON_0005941.md index 25b6f3ac3e..4d486f9a5f 100644 --- a/md/UBERON/41/UBERON_0005941.md +++ b/md/UBERON/41/UBERON_0005941.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005941 * *Label* = hair inner root sheath - * *Definition* = A multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010685[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] + * *Definition* = A multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010685, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 ] ## Synonyms - * hair follicle inner root sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010685] - * inner root sheath of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70935] - * inner sheath of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70935] - * internal root sheath of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70935] - * inner root sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003971] + * hair follicle inner root sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010685 ] + * inner root sheath of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70935 ] + * inner sheath of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70935 ] + * internal root sheath of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70935 ] + * inner root sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003971 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006041.md b/md/UBERON/41/UBERON_0006041.md index e3fead76e8..c846465672 100644 --- a/md/UBERON/41/UBERON_0006041.md +++ b/md/UBERON/41/UBERON_0006041.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006041 * *Label* = interdigital region between pedal digits 2 and 3 - * *Definition* = An interdigital region that adjacent_to a pedal digit 2 and adjacent_to a pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a pedal digit 2 and adjacent_to a pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006141.md b/md/UBERON/41/UBERON_0006141.md index e02c48a439..3867916257 100644 --- a/md/UBERON/41/UBERON_0006141.md +++ b/md/UBERON/41/UBERON_0006141.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006241.md b/md/UBERON/41/UBERON_0006241.md index 790087307d..f6448a1e16 100644 --- a/md/UBERON/41/UBERON_0006241.md +++ b/md/UBERON/41/UBERON_0006241.md @@ -6,10 +6,10 @@ ## Synonyms - * presumptive spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000417] - * presumptive spinal cord neural keel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000417] - * presumptive spinal cord neural plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000417] - * presumptive spinal cord neural rod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000417] + * presumptive spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000417 ] + * presumptive spinal cord neural keel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000417 ] + * presumptive spinal cord neural plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000417 ] + * presumptive spinal cord neural rod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000417 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006341.md b/md/UBERON/41/UBERON_0006341.md index 330dae3b7d..e09e2390b4 100644 --- a/md/UBERON/41/UBERON_0006341.md +++ b/md/UBERON/41/UBERON_0006341.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006341 * *Label* = outer renal medulla peritubular capillary - * *Definition* = A peritubular capillary that is part of a outer medulla of kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A peritubular capillary that is part of a outer medulla of kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney outer medulla peritubular capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002589] + * kidney outer medulla peritubular capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002589 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [outer medulla of kidney](../../UBERON/93/UBERON_0001293.md) and [peritubular capillary](../../UBERON/72/UBERON_0005272.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006541.md b/md/UBERON/41/UBERON_0006541.md index d1600ae40f..a0c204bf75 100644 --- a/md/UBERON/41/UBERON_0006541.md +++ b/md/UBERON/41/UBERON_0006541.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006541 * *Label* = outer medulla inner stripe loop of henle - * *Definition* = A loop of Henle that is part of a kidney outer medulla inner stripe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A loop of Henle that is part of a kidney outer medulla inner stripe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [loop of Henle](../../UBERON/88/UBERON_0001288.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney outer medulla inner stripe](../../UBERON/01/UBERON_0004201.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006641.md b/md/UBERON/41/UBERON_0006641.md index 20f44c872f..f6bf380168 100644 --- a/md/UBERON/41/UBERON_0006641.md +++ b/md/UBERON/41/UBERON_0006641.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006641 * *Label* = appendix epididymis - * *Definition* = On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_epididymidis] + * *Definition* = On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_epididymidis ] ## Synonyms - * appendix of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18268] - * epididymal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18268] - * epididymis appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18268] - * appendix epididymidis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_epididymidis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * appendix epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_epididymidis] - * appendix of the epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_epididymidis] + * appendix of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18268 ] + * epididymal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18268 ] + * epididymis appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18268 ] + * appendix epididymidis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_epididymidis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * appendix epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_epididymidis ] + * appendix of the epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_epididymidis ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0006841.md b/md/UBERON/41/UBERON_0006841.md index 441d7e93bd..3f2021daa8 100644 --- a/md/UBERON/41/UBERON_0006841.md +++ b/md/UBERON/41/UBERON_0006841.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006841 * *Label* = central vein of liver - * *Definition* = Vein that is central to a lobule in the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005168] + * *Definition* = Vein that is central to a lobule in the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005168 ] ## Synonyms - * terminal branch of hepatic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17544] - * terminal hepatic venule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17544] - * vena centralis (Hepar) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17544] + * terminal branch of hepatic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17544 ] + * terminal hepatic venule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17544 ] + * vena centralis (Hepar) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17544 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0007141.md b/md/UBERON/41/UBERON_0007141.md index 929ddcd985..8940087c35 100644 --- a/md/UBERON/41/UBERON_0007141.md +++ b/md/UBERON/41/UBERON_0007141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007141 * *Label* = visceral mesothelium - * *Definition* = Mesothelium that covers the internal organs is called visceral mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Mesothelium] + * *Definition* = Mesothelium that covers the internal organs is called visceral mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Mesothelium ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0007241.md b/md/UBERON/41/UBERON_0007241.md index fb3c026a28..875a9f4c1f 100644 --- a/md/UBERON/41/UBERON_0007241.md +++ b/md/UBERON/41/UBERON_0007241.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007241 * *Label* = tunica adventitia of vein - * *Definition* = A tunica adventitia that is part of a vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica adventitia that is part of a vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tunica externa (adventitia)(venae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14355] - * venous adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100034] + * tunica externa (adventitia)(venae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14355 ] + * venous adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100034 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) and [tunica adventitia of blood vessel](../../UBERON/34/UBERON_0005734.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0007641.md b/md/UBERON/41/UBERON_0007641.md index 4510986d06..cf2c5c9f6a 100644 --- a/md/UBERON/41/UBERON_0007641.md +++ b/md/UBERON/41/UBERON_0007641.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007641 * *Label* = trigeminal nuclear complex - * *Definition* = The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nerve_nuclei] + * *Definition* = The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nerve_nuclei ] * *Comment* = In MA and FMA this is part of the pons / pontime tegmentum. We weaken this to overlaps to avoid inconsistency. In NIF this is a composite structure spanning multiple regions, which is more appropriate. ## Synonyms - * trigeminal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71248] - * nuclei trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nerve_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trigeminal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71248 ] + * nuclei trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nerve_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:71248 * NIF_GrossAnatomy:birnlex_4096 * NeuroNames:2021 - * UMLS:C0040999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4096] + * UMLS:C0040999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4096 ] * Wikipedia:Trigeminal_nerve_nuclei * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png @@ -30,7 +30,7 @@ * [nuclear complex of neuraxis](../../UBERON/45/UBERON_0007245.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pontine tegmentum](../../UBERON/23/UBERON_0003023.md) * [continuous_with](../../FMA/72/FMA_85972.md) some [trigeminal nerve](../../UBERON/45/UBERON_0001645.md) ## Equivalencies @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0007741.md b/md/UBERON/41/UBERON_0007741.md index 32f46ec3cd..35af2fc660 100644 --- a/md/UBERON/41/UBERON_0007741.md +++ b/md/UBERON/41/UBERON_0007741.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007741 * *Label* = metacarpophalangeal joint of manual digit 3 - * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpophalangeal joint of digit 3 - * metacarpophalangeal joint of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35255] - * metacarpophalangeal joint of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35255] - * carpometacarpophalangeal joint of third digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * metacarpo-phalangeal joint of digit 3 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25063] - * metacarpophalangeal joint of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35255[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpophalangeal joint of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35255 ] + * metacarpophalangeal joint of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35255 ] + * carpometacarpophalangeal joint of third digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * metacarpo-phalangeal joint of digit 3 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25063 ] + * metacarpophalangeal joint of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35255, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manual digit 3](../../UBERON/29/UBERON_0004329.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0007841.md b/md/UBERON/41/UBERON_0007841.md index fa64a28657..b49e8a3ef4 100644 --- a/md/UBERON/41/UBERON_0007841.md +++ b/md/UBERON/41/UBERON_0007841.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007841 * *Label* = furcula - * *Definition* = Dermal bone that develops from the fusion of the paired clavicle condensations in Archosauria. Serves as both an attachment site for pectoral musculature as well as a mechanical strengthening/ spacing element in the pectoral girdle. [PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = Dermal bone that develops from the fusion of the paired clavicle condensations in Archosauria. Serves as both an attachment site for pectoral musculature as well as a mechanical strengthening/ spacing element in the pectoral girdle. [PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Comment: Found in both avian and non-avian theropods including, but not limited to: Coelophysoids, Allosauroids, Spinosauridae, Tyrannosauroids, Oviraptorosauria, Troodontidae and Dromaeosauridae. Editor notes: currently assigned to be part of the pectoral girdle, but this may be incorrect if PG is a paired structure. ## Synonyms * furcula bone * fused clavicle - * wishbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Furcula] + * wishbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Furcula ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0008341.md b/md/UBERON/41/UBERON_0008341.md index a88f289433..b9d642345b 100644 --- a/md/UBERON/41/UBERON_0008341.md +++ b/md/UBERON/41/UBERON_0008341.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008341 * *Label* = columella nasi - * *Definition* = the tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full] + * *Definition* = the tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full ] ## Synonyms - * columella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59725] + * columella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59725 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0008441.md b/md/UBERON/41/UBERON_0008441.md index e17303ac21..28f9a67005 100644 --- a/md/UBERON/41/UBERON_0008441.md +++ b/md/UBERON/41/UBERON_0008441.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008441 * *Label* = webbed manus - * *Definition* = A manus that has_part a webbed interdigital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manus that has_part a webbed interdigital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand webbing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010120] + * hand webbing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010120 ] * webbed hand ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [webbed interdigital region](../../UBERON/15/UBERON_0006015.md) and [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0008841.md b/md/UBERON/41/UBERON_0008841.md index 78ce3b49df..554fa29f0c 100644 --- a/md/UBERON/41/UBERON_0008841.md +++ b/md/UBERON/41/UBERON_0008841.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008841 * *Label* = suspensory ligament - * *Definition* = A ligament that supports a body part, especially an organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments_of_penis] + * *Definition* = A ligament that supports a body part, especially an organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments_of_penis ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0008941.md b/md/UBERON/41/UBERON_0008941.md index 8e0bdeb132..db2060907e 100644 --- a/md/UBERON/41/UBERON_0008941.md +++ b/md/UBERON/41/UBERON_0008941.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008941 * *Label* = pleural ganglion - * *Definition* = The pallial cavity's nerve knots are called pleural ganglia. They innerve primarily the mantle or a snail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001842] + * *Definition* = The pallial cavity's nerve knots are called pleural ganglia. They innerve primarily the mantle or a snail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001842 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0009041.md b/md/UBERON/41/UBERON_0009041.md index 8643aaa7d3..4832df0518 100644 --- a/md/UBERON/41/UBERON_0009041.md +++ b/md/UBERON/41/UBERON_0009041.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009041 * *Label* = superficial circumflex iliac artery - * *Definition* = The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_circumflex_iliac_artery] + * *Definition* = The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_circumflex_iliac_artery ] ## Synonyms - * arteria circumflexa ilium superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_iliac_circumflex_artery] - * iliac circumflex artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_iliac_circumflex_artery] - * superficial circumflex iliac artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_iliac_circumflex_artery] + * arteria circumflexa ilium superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_iliac_circumflex_artery ] + * iliac circumflex artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_iliac_circumflex_artery ] + * superficial circumflex iliac artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_iliac_circumflex_artery ] ## Cross-references * FMA:20737 - * UMLS:C0738891 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superficial_Circumflex_Iliac_Artery] + * UMLS:C0738891 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superficial_Circumflex_Iliac_Artery ] * Wikipedia:Superficial_circumflex_iliac_artery * http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png * ncithesaurus:Superficial_Circumflex_Iliac_Artery @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0009141.md b/md/UBERON/41/UBERON_0009141.md index 39b95dc0a0..5a7029b5c8 100644 --- a/md/UBERON/41/UBERON_0009141.md +++ b/md/UBERON/41/UBERON_0009141.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009141 * *Label* = craniocervical region vein - * *Definition* = A vein that is part of a craniocervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a craniocervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * craniocervical vein - * head and neck veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004542] + * head and neck veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004542 ] * vein of head and neck ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0009641.md b/md/UBERON/41/UBERON_0009641.md index 4fe940143e..c2a5878a14 100644 --- a/md/UBERON/41/UBERON_0009641.md +++ b/md/UBERON/41/UBERON_0009641.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009641 * *Label* = ansa lenticularis - * *Definition* = The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ansa_lenticularis] + * *Definition* = The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ansa_lenticularis ] ## Synonyms - * ansa lenticularis in thalamo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ansa lenticularis in thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62070] - * ventral peduncle of lateral forebrain bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62070] + * ansa lenticularis in thalamo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ansa lenticularis in thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62070 ] + * ventral peduncle of lateral forebrain bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62070 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0009741.md b/md/UBERON/41/UBERON_0009741.md index 9a55a2e1c5..d1bc9e20f8 100644 --- a/md/UBERON/41/UBERON_0009741.md +++ b/md/UBERON/41/UBERON_0009741.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009741 * *Label* = tailbud stage - * *Definition* = Any of the developmental stages from Nieuwkoop and Faber stage 20 to stage 44 (feeding), including the beginning of hatching (NF stage 35/36). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960] + * *Definition* = Any of the developmental stages from Nieuwkoop and Faber stage 20 to stage 44 (feeding), including the beginning of hatching (NF stage 35/36). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0009841.md b/md/UBERON/41/UBERON_0009841.md index 034c0fe5f0..d76f50e8e3 100644 --- a/md/UBERON/41/UBERON_0009841.md +++ b/md/UBERON/41/UBERON_0009841.md @@ -3,14 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009841 * *Label* = upper rhombic lip - * *Definition* = Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * cerebellar anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001442] - * presumptive cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001442] - * rostral rhombic lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:URL] - * rhombomere 01 cerebellum primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000229] + * cerebellar anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001442 ] + * presumptive cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001442 ] + * rostral rhombic lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:URL ] + * upper (rostral) rhombic lip + * rhombomere 01 cerebellum primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000229 ] ## Cross-references @@ -37,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009841 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010041.md b/md/UBERON/41/UBERON_0010041.md index 06627c7f74..849594e0a0 100644 --- a/md/UBERON/41/UBERON_0010041.md +++ b/md/UBERON/41/UBERON_0010041.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010141.md b/md/UBERON/41/UBERON_0010141.md index 25eb8a110a..31d77f85a6 100644 --- a/md/UBERON/41/UBERON_0010141.md +++ b/md/UBERON/41/UBERON_0010141.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010141 * *Label* = primitive sex cord of indifferent gonad - * *Definition* = A sex cord that is part of a indifferent gonad. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sex cord that is part of a indifferent gonad. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Usage notes: note that this represents the indifferent structure. ## Synonyms * indifferent sex cord - * primitive sex cords [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004051] + * primitive sex cords [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004051 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [indifferent gonad](../../UBERON/17/UBERON_0009117.md) and [sex cord](../../UBERON/95/UBERON_0005295.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010241.md b/md/UBERON/41/UBERON_0010241.md index 9f7dd8f927..6e842a3680 100644 --- a/md/UBERON/41/UBERON_0010241.md +++ b/md/UBERON/41/UBERON_0010241.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010241 * *Label* = molar gland - * *Definition* = A minor salivary gland that is part of a cheek. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A minor salivary gland that is part of a cheek. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = a variety of mammals have salivary glands variously terms upper molar/buccal gland - this class groups all of these ## Synonyms - * molar salivary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59794] + * molar salivary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59794 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [minor salivary gland](../../UBERON/30/UBERON_0001830.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cheek](../../UBERON/67/UBERON_0001567.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010341.md b/md/UBERON/41/UBERON_0010341.md index 5b3887a1ed..8feb4d1420 100644 --- a/md/UBERON/41/UBERON_0010341.md +++ b/md/UBERON/41/UBERON_0010341.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010341 * *Label* = 1st arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 1st arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme derived from head mesoderm of mesenchyme of 1st arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16130] + * mesenchyme derived from head mesoderm of mesenchyme of 1st arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16130 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch mesenchyme](../../UBERON/42/UBERON_0010042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010341 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010541.md b/md/UBERON/41/UBERON_0010541.md index 3200c42c6c..ef05011f9c 100644 --- a/md/UBERON/41/UBERON_0010541.md +++ b/md/UBERON/41/UBERON_0010541.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010541 * *Label* = tarsus cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tarsal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tarsal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [tarsal bone](../../UBERON/47/UBERON_0001447.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0010741.md b/md/UBERON/41/UBERON_0010741.md index e2768b1849..e439385ce2 100644 --- a/md/UBERON/41/UBERON_0010741.md +++ b/md/UBERON/41/UBERON_0010741.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010741 * *Label* = bone of pectoral complex - * *Definition* = A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a pectoral complex. Examples: scapula, manus phalanx, any carpal bone, any bone of the pectoral fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes - note that the MA class includes girdle parts so it belongs here; Editor notes: considering adding pectoral and pelvic complex skeleton classes ## Synonyms - * wing bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * bone of forelimb or pectoral fin or pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * forelimb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000612[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * wing bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * bone of forelimb or pectoral fin or pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * forelimb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000612, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0011141.md b/md/UBERON/41/UBERON_0011141.md index 2a44cae798..2bc39a381f 100644 --- a/md/UBERON/41/UBERON_0011141.md +++ b/md/UBERON/41/UBERON_0011141.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011141 * *Label* = appendicular ossicle - * *Definition* = Ossicle that is part of the appendicular skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000131] + * *Definition* = Ossicle that is part of the appendicular skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000131 ] * *Comment* = Examples of appendicular ossicles include the patella and meniscus of the knee joint. ## Synonyms - * ossicle of appendicular skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ossicle of appendicular skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ossicle](../../UBERON/11/UBERON_0010911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendicular skeleton](../../UBERON/91/UBERON_0002091.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0011241.md b/md/UBERON/41/UBERON_0011241.md index c9936783f4..540689ded2 100644 --- a/md/UBERON/41/UBERON_0011241.md +++ b/md/UBERON/41/UBERON_0011241.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011241 * *Label* = ethmoid region - * *Definition* = the most anterior region of the braincase. Provides structural support for peripheral olfactory organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000007[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] + * *Definition* = the most anterior region of the braincase. Provides structural support for peripheral olfactory organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000007, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/braincase/ethmoid.html ] * *Comment* = Usage notes: currently this is not restricted to skeletal elements, unlike UBERONREF:0000007 ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0011641.md b/md/UBERON/41/UBERON_0011641.md index 6e004d4360..35d4c4a0c2 100644 --- a/md/UBERON/41/UBERON_0011641.md +++ b/md/UBERON/41/UBERON_0011641.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011641 * *Label* = odontogenic papilla of molar - * *Definition* = An odontogenic papilla that is part of a molar tooth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An odontogenic papilla that is part of a molar tooth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * molar mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * molar odontogenic papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * molar tooth odontogenic papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * odontogenic papilla of molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * molar mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * molar odontogenic papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * molar tooth odontogenic papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * odontogenic papilla of molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [molar tooth](../../UBERON/55/UBERON_0003655.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0011741.md b/md/UBERON/41/UBERON_0011741.md index 7ab7e39082..151e02c363 100644 --- a/md/UBERON/41/UBERON_0011741.md +++ b/md/UBERON/41/UBERON_0011741.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0011941.md b/md/UBERON/41/UBERON_0011941.md index edce41486c..43f48f72b3 100644 --- a/md/UBERON/41/UBERON_0011941.md +++ b/md/UBERON/41/UBERON_0011941.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011941 * *Label* = lateral angle of scapula - * *Definition* = An angle of the scapula that is broad and bears the glenoid cavity or fossa[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_angle_of_scapula] + * *Definition* = An angle of the scapula that is broad and bears the glenoid cavity or fossa[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_angle_of_scapula ] ## Synonyms - * angulus lateralis (scapula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23249] - * angulus lateralis scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_angle_of_scapula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glenoid angle of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_angle_of_scapula] - * head of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_angle_of_scapula] + * angulus lateralis (scapula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23249 ] + * angulus lateralis scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_angle_of_scapula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glenoid angle of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_angle_of_scapula ] + * head of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_angle_of_scapula ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011941 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0012141.md b/md/UBERON/41/UBERON_0012141.md index 7447df2f87..1e0455644c 100644 --- a/md/UBERON/41/UBERON_0012141.md +++ b/md/UBERON/41/UBERON_0012141.md @@ -8,7 +8,7 @@ ## Synonyms - * hand proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61067] + * hand proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61067 ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digitopodium region](../../UBERON/40/UBERON_0012140.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012141 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_0012241.md b/md/UBERON/41/UBERON_0012241.md index 61be014af9..6f3b6c6d5f 100644 --- a/md/UBERON/41/UBERON_0012241.md +++ b/md/UBERON/41/UBERON_0012241.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012241 * *Label* = male urethral meatus - * *Definition* = A urethral meatus that is part of a male urethra[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_urethral_orifice_%28male%29] + * *Definition* = A urethral meatus that is part of a male urethra[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_urethral_orifice_%28male%29 ] ## Synonyms - * external orifice of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85265] - * external urethral orifice (male) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85265] - * ostium urethrae externum (urethra masculina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * external orifice of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85265 ] + * external urethral orifice (male) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85265 ] + * ostium urethrae externum (urethra masculina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [urethral meatus](../../UBERON/40/UBERON_0012240.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external urethral orifice is the external opening or meatus of the urethra, normally placed at the tip of glans penis; it presents as a vertical slit, possibly bounded on either side by two small labia-like projections, In some cases the slit may be more rounded. This occurs naturally in some males and may also be a side effect of excess skin removal during circumcision. Congenital misplacement of the urethral orifice is called hypospadias when it is located in the underside (ventral aspect) of the penis, and epispadias when located in the dorsum (upper aspect). Improper shaping of the meatus can result in meatal stenosis. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0012441.md b/md/UBERON/41/UBERON_0012441.md index 8d069cd727..a798fb1437 100644 --- a/md/UBERON/41/UBERON_0012441.md +++ b/md/UBERON/41/UBERON_0012441.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [peritubular capillary](../../UBERON/72/UBERON_0005272.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0012641.md b/md/UBERON/41/UBERON_0012641.md index 1d0082f3be..bf9230a1bd 100644 --- a/md/UBERON/41/UBERON_0012641.md +++ b/md/UBERON/41/UBERON_0012641.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0013141.md b/md/UBERON/41/UBERON_0013141.md index 37c34fce0f..a86c4e680f 100644 --- a/md/UBERON/41/UBERON_0013141.md +++ b/md/UBERON/41/UBERON_0013141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013141 * *Label* = capillary bed - * *Definition* = A localized group of blood capillaries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0001002] + * *Definition* = A localized group of blood capillaries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0001002 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013141 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0013241.md b/md/UBERON/41/UBERON_0013241.md index 031df499d8..edcb77fe2b 100644 --- a/md/UBERON/41/UBERON_0013241.md +++ b/md/UBERON/41/UBERON_0013241.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013241 * *Label* = embryonic urethral groove - * *Definition* = The urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. In humans, it typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethral_groove] + * *Definition* = The urethral groove is a temporary linear indentation on the underside (ventral side) of the male penis during embryonic development. In humans, it typically appears around 8 weeks of gestation and becomes closed into a normal male urethra by the 12th week. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethral_groove ] ## Synonyms - * sulcus urethralis primarius [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus urethralis primarius [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * urethral groove * urethral sulcus @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013241 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0013541.md b/md/UBERON/41/UBERON_0013541.md index a032de1432..11f9659cf4 100644 --- a/md/UBERON/41/UBERON_0013541.md +++ b/md/UBERON/41/UBERON_0013541.md @@ -6,27 +6,27 @@ ## Synonyms - * B09-10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * Brodmann (1909) area 10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * Brodmann area 10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68607] - * Brodmann area 10, frontoplar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * Brodmann.10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * Lateral orbital area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68607] - * area 10 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68607] - * area 10 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * area frontopolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1741] - * B09-10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1741[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * rostral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:76] - * sulcus rectus (Krieg) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:76[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:76[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * Brodmann (1909) area 10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * Brodmann area 10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68607 ] + * Brodmann area 10, frontoplar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * Brodmann.10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * Lateral orbital area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68607 ] + * area 10 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68607 ] + * area 10 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * area frontopolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1741 ] + * B09-10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1741, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * rostral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:76 ] + * sulcus rectus (Krieg) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:76, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:76, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ros * FMA:68607 * NIF_GrossAnatomy:birnlex_1741 - * NeuroNames:76 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1741] - * UMLS:C1272532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1741] + * NeuroNames:76 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1741 ] + * UMLS:C1272532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1741 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0013641.md b/md/UBERON/41/UBERON_0013641.md index f25e476c6c..b00035c720 100644 --- a/md/UBERON/41/UBERON_0013641.md +++ b/md/UBERON/41/UBERON_0013641.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0013741.md b/md/UBERON/41/UBERON_0013741.md index 81ec4aea38..c46b30d45b 100644 --- a/md/UBERON/41/UBERON_0013741.md +++ b/md/UBERON/41/UBERON_0013741.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [base of crypt of lieberkuhn](../../UBERON/39/UBERON_0013739.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0014441.md b/md/UBERON/41/UBERON_0014441.md index 7ffa59cb61..b93cb731f3 100644 --- a/md/UBERON/41/UBERON_0014441.md +++ b/md/UBERON/41/UBERON_0014441.md @@ -6,9 +6,9 @@ ## Synonyms - * ramus of ischium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17007] - * ramus ossis ischii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17007] - * ramusi ossis ischii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * ramus of ischium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17007 ] + * ramus ossis ischii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17007 ] + * ramusi ossis ischii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014441 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0014541.md b/md/UBERON/41/UBERON_0014541.md index 5578c7645c..08fd437e6e 100644 --- a/md/UBERON/41/UBERON_0014541.md +++ b/md/UBERON/41/UBERON_0014541.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014541 * *Label* = thoracic spinal cord central canal - * *Definition* = Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1395] + * *Definition* = Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1395 ] ## Synonyms - * thoracic spinal cord central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1395[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * thoracic spinal cord central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1395, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_1395 * SCTID:71118002 - * UMLS:C0228637 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1395] + * UMLS:C0228637 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1395 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of spinal cord central canal](../../UBERON/38/UBERON_0014538.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014541 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0014641.md b/md/UBERON/41/UBERON_0014641.md index 6d69b25603..11f54b0708 100644 --- a/md/UBERON/41/UBERON_0014641.md +++ b/md/UBERON/41/UBERON_0014641.md @@ -6,9 +6,9 @@ ## Synonyms - * cranial nerve 0 root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_nerve] + * cranial nerve 0 root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_nerve ] * root of terminal nerve - * terminal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4045[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * terminal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4045, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [terminal nerve](../../UBERON/24/UBERON_0002924.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014641 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0014741.md b/md/UBERON/41/UBERON_0014741.md index 101dcfa9fb..8c4d24e9cd 100644 --- a/md/UBERON/41/UBERON_0014741.md +++ b/md/UBERON/41/UBERON_0014741.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014741 * *Label* = lateral pallium - * *Definition* = Subdivision of pallium that is located laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Subdivision of pallium that is located laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms * area dorsalis telencephali, zona lateralis * lateral zone of D * lateral zone of dorsal telencephalic area - * LP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medial pallium (everted brain) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * olfactory pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * piriform pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * proximal pallium (everted brain) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * LP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medial pallium (everted brain) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * olfactory pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * piriform pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * proximal pallium (everted brain) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pallium of vertebrates have 3 major divisions, medial, dorsal and lateral, but questions of homology are unresolved. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014741 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_0015041.md b/md/UBERON/41/UBERON_0015041.md index 28c504c09a..582fe699a5 100644 --- a/md/UBERON/41/UBERON_0015041.md +++ b/md/UBERON/41/UBERON_0015041.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015041 * *Label* = pedal digit 5 metatarsal endochondral element - * *Definition* = A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pedal digit 5 metatarsal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pedal digit 5 metatarsal skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pedal digit 5 metatarsal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pedal digit 5 metatarsal skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [metatarsal bone of digit 5](../../UBERON/54/UBERON_0003654.md)or[pedal digit 5 metatarsal cartilage element](../../UBERON/61/UBERON_0010561.md)or[pedal digit 5 metatarsal pre-cartilage condensation](../../UBERON/51/UBERON_0010551.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015041 + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2000241.md b/md/UBERON/41/UBERON_2000241.md index 6b66b3af4f..e1403bc6a7 100644 --- a/md/UBERON/41/UBERON_2000241.md +++ b/md/UBERON/41/UBERON_2000241.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2000341.md b/md/UBERON/41/UBERON_2000341.md index 45a5e6e8af..ff64659a47 100644 --- a/md/UBERON/41/UBERON_2000341.md +++ b/md/UBERON/41/UBERON_2000341.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2000541.md b/md/UBERON/41/UBERON_2000541.md index ea8f36b9e1..c2c2dd24e5 100644 --- a/md/UBERON/41/UBERON_2000541.md +++ b/md/UBERON/41/UBERON_2000541.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000541 * *Label* = obsolete marginal blastomere - * *Definition* = Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * marginal blastomeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000541[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * marginal blastomeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000541, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = ZFA:0000541 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_2000741.md b/md/UBERON/41/UBERON_2000741.md index 82cd52af8c..b3978c0da2 100644 --- a/md/UBERON/41/UBERON_2000741.md +++ b/md/UBERON/41/UBERON_2000741.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000741 * *Label* = epaxial region somite 14 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2000841.md b/md/UBERON/41/UBERON_2000841.md index 700fc8b993..5eb162f631 100644 --- a/md/UBERON/41/UBERON_2000841.md +++ b/md/UBERON/41/UBERON_2000841.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000841[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000841, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_2000941.md b/md/UBERON/41/UBERON_2000941.md index 8825b8a41d..c5194ce675 100644 --- a/md/UBERON/41/UBERON_2000941.md +++ b/md/UBERON/41/UBERON_2000941.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001041.md b/md/UBERON/41/UBERON_2001041.md index f96676dc29..e6d0bfa235 100644 --- a/md/UBERON/41/UBERON_2001041.md +++ b/md/UBERON/41/UBERON_2001041.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001041 * *Label* = sclerotome somite 21 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001141.md b/md/UBERON/41/UBERON_2001141.md index 192a7db003..52aa9f49b2 100644 --- a/md/UBERON/41/UBERON_2001141.md +++ b/md/UBERON/41/UBERON_2001141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001141 * *Label* = tooth 1V - * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 1 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001241.md b/md/UBERON/41/UBERON_2001241.md index 58b7cc4eac..c5bce55726 100644 --- a/md/UBERON/41/UBERON_2001241.md +++ b/md/UBERON/41/UBERON_2001241.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001241 * *Label* = ceratobranchial 3 bone - * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001341.md b/md/UBERON/41/UBERON_2001341.md index 3bcce1fc2b..2901419d92 100644 --- a/md/UBERON/41/UBERON_2001341.md +++ b/md/UBERON/41/UBERON_2001341.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001341 * *Label* = intervening zone - * *Definition* = A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * IZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001341] + * IZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001341 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001541.md b/md/UBERON/41/UBERON_2001541.md index f5c4fbbe83..7a00a7c11e 100644 --- a/md/UBERON/41/UBERON_2001541.md +++ b/md/UBERON/41/UBERON_2001541.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001541 * *Label* = pelvic radial 2 cartilage - * *Definition* = Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001741.md b/md/UBERON/41/UBERON_2001741.md index ca8b123fa5..2e7e6732f1 100644 --- a/md/UBERON/41/UBERON_2001741.md +++ b/md/UBERON/41/UBERON_2001741.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001741 * *Label* = trigeminofacial foramen - * *Definition* = Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = i]In some vertebrates there are separate trigeminal foramen and facial foramen. ## Synonyms - * trigemino-facialis foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001741] - * trigeminofacial nerve foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001741] - * trigeminofacialis foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001741] + * trigemino-facialis foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001741 ] + * trigeminofacial nerve foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001741 ] + * trigeminofacialis foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001741 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001841.md b/md/UBERON/41/UBERON_2001841.md index a1afaad0bc..9bda584c68 100644 --- a/md/UBERON/41/UBERON_2001841.md +++ b/md/UBERON/41/UBERON_2001841.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001841 * *Label* = interhyal-epihyal joint - * *Definition* = Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Logical definition to be added after generic element classes added to group/bone cartilage ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2001941.md b/md/UBERON/41/UBERON_2001941.md index 2ea7e2c890..886f4345cd 100644 --- a/md/UBERON/41/UBERON_2001941.md +++ b/md/UBERON/41/UBERON_2001941.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001941 * *Label* = orbitosphenoid-lateral ethmoid joint - * *Definition* = Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [lateral ethmoid](../../UBERON/26/UBERON_2000226.md) and [core#connects](../../ts/core#connects.md) some [orbitosphenoid](../../UBERON/78/UBERON_0002478.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2002041.md b/md/UBERON/41/UBERON_2002041.md index 806232468d..96b1605e7d 100644 --- a/md/UBERON/41/UBERON_2002041.md +++ b/md/UBERON/41/UBERON_2002041.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002041 * *Label* = parapophysis 6 - * *Definition* = Parapophysis that is the lateral projection from the sixth centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Parapophysis that is the lateral projection from the sixth centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2002141.md b/md/UBERON/41/UBERON_2002141.md index f2fc931f2b..74104f65b8 100644 --- a/md/UBERON/41/UBERON_2002141.md +++ b/md/UBERON/41/UBERON_2002141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002141 * *Label* = annular ligament - * *Definition* = Ligament that is in the eye and is located at the angle between the cornea and the iris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Ligament that is in the eye and is located at the angle between the cornea and the iris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2002241.md b/md/UBERON/41/UBERON_2002241.md index e845ad9a93..3ce762adab 100644 --- a/md/UBERON/41/UBERON_2002241.md +++ b/md/UBERON/41/UBERON_2002241.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2005241.md b/md/UBERON/41/UBERON_2005241.md index a66a00830b..ae480b97f7 100644 --- a/md/UBERON/41/UBERON_2005241.md +++ b/md/UBERON/41/UBERON_2005241.md @@ -6,12 +6,12 @@ ## Synonyms - * intermediate erythroblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] - * polychromatic erythroblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] - * polychromatic normoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] - * rubricyte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] - * intermediate normoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] - * polychromatophilic normoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005241] + * intermediate erythroblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] + * polychromatic erythroblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] + * polychromatic normoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] + * rubricyte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] + * intermediate normoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] + * polychromatophilic normoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005241 ] ## Cross-references @@ -34,8 +34,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000550 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_2005341.md b/md/UBERON/41/UBERON_2005341.md index 5424acc33f..b782da8ae5 100644 --- a/md/UBERON/41/UBERON_2005341.md +++ b/md/UBERON/41/UBERON_2005341.md @@ -6,7 +6,7 @@ ## Synonyms - * mlct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005341] + * mlct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005341 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_2007041.md b/md/UBERON/41/UBERON_2007041.md index ca467b474c..20c54aa73c 100644 --- a/md/UBERON/41/UBERON_2007041.md +++ b/md/UBERON/41/UBERON_2007041.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3000041.md b/md/UBERON/41/UBERON_3000041.md index c9ad67c507..f95792fce8 100644 --- a/md/UBERON/41/UBERON_3000041.md +++ b/md/UBERON/41/UBERON_3000041.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000041 * *Label* = Bidder's organ - * *Definition* = Anatomical structure which forms from an enlargement of the anterior portion of each gonad in all male bufonid larvae and consists of ovarian tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Anatomical structure which forms from an enlargement of the anterior portion of each gonad in all male bufonid larvae and consists of ovarian tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3000141.md b/md/UBERON/41/UBERON_3000141.md index a849e27f5e..0535980e2c 100644 --- a/md/UBERON/41/UBERON_3000141.md +++ b/md/UBERON/41/UBERON_3000141.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3000341.md b/md/UBERON/41/UBERON_3000341.md index 0260f18887..952adeabac 100644 --- a/md/UBERON/41/UBERON_3000341.md +++ b/md/UBERON/41/UBERON_3000341.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3000441.md b/md/UBERON/41/UBERON_3000441.md index c891cd520f..72ec6c1324 100644 --- a/md/UBERON/41/UBERON_3000441.md +++ b/md/UBERON/41/UBERON_3000441.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000441 * *Label* = planum triangulare - * *Definition* = Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3000841.md b/md/UBERON/41/UBERON_3000841.md index 4791567689..b535bd7d78 100644 --- a/md/UBERON/41/UBERON_3000841.md +++ b/md/UBERON/41/UBERON_3000841.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000841 * *Label* = obsolete capitulum radii - * *Definition* = Small eminence on the distal articular head of the radius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small eminence on the distal articular head of the radius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3000840 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_3000941.md b/md/UBERON/41/UBERON_3000941.md index 608886c475..cb6fa64709 100644 --- a/md/UBERON/41/UBERON_3000941.md +++ b/md/UBERON/41/UBERON_3000941.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000941 * *Label* = arciferal girdle - * *Definition* = Pectoral girdle in which the epicoracoid cartilages are elaborated into posteriorly directed epicoracoid horns. Most arciferal pectoral girdles are characterized by fusion of the epicoracoid cartilages in the interclavicle region. Posterior to the clavicles, the epicoracoids usually are free and overlapping. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Pectoral girdle in which the epicoracoid cartilages are elaborated into posteriorly directed epicoracoid horns. Most arciferal pectoral girdles are characterized by fusion of the epicoracoid cartilages in the interclavicle region. Posterior to the clavicles, the epicoracoids usually are free and overlapping. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3010241.md b/md/UBERON/41/UBERON_3010241.md index dae8a7a072..38dac76559 100644 --- a/md/UBERON/41/UBERON_3010241.md +++ b/md/UBERON/41/UBERON_3010241.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3010541.md b/md/UBERON/41/UBERON_3010541.md index d748cf6e24..23ed2e6bcb 100644 --- a/md/UBERON/41/UBERON_3010541.md +++ b/md/UBERON/41/UBERON_3010541.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010541 * *Label* = median pars intermedia - * *Definition* = Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_3010741.md b/md/UBERON/41/UBERON_3010741.md index 13e55ea4d5..2253539db9 100644 --- a/md/UBERON/41/UBERON_3010741.md +++ b/md/UBERON/41/UBERON_3010741.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010741 * *Label* = M. ulnocarpalis - * *Definition* = Originates along distal third of the ulna and inserts on the ulnare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates along distal third of the ulna and inserts on the ulnare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_4000041.md b/md/UBERON/41/UBERON_4000041.md index 9498fed8dd..a8e6e47368 100644 --- a/md/UBERON/41/UBERON_4000041.md +++ b/md/UBERON/41/UBERON_4000041.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000041 * *Label* = obsolete preodontoblast - * *Definition* = Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007003 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_4000141.md b/md/UBERON/41/UBERON_4000141.md index b17cfcf90b..23d9910c4d 100644 --- a/md/UBERON/41/UBERON_4000141.md +++ b/md/UBERON/41/UBERON_4000141.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000141 * *Label* = obsolete intramembranous ossification - * *Definition* = Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0001957 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/41/UBERON_4200041.md b/md/UBERON/41/UBERON_4200041.md index f0f7906ee1..c4c0b49f88 100644 --- a/md/UBERON/41/UBERON_4200041.md +++ b/md/UBERON/41/UBERON_4200041.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/41/UBERON_4200141.md b/md/UBERON/41/UBERON_4200141.md index a9e96e51ab..336af09f20 100644 --- a/md/UBERON/41/UBERON_4200141.md +++ b/md/UBERON/41/UBERON_4200141.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = DB - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0000042.md b/md/UBERON/42/UBERON_0000042.md index f755a5977a..e6a7433345 100644 --- a/md/UBERON/42/UBERON_0000042.md +++ b/md/UBERON/42/UBERON_0000042.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000042 * *Label* = serous membrane - * *Definition* = multi-tissue structure that is comprised of a secretory epithelial layer (mesothelium) and a connective tissue layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serous_membrane[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/86] + * *Definition* = multi-tissue structure that is comprised of a secretory epithelial layer (mesothelium) and a connective tissue layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serous_membrane, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/86 ] * *Comment* = in FMA, SM = mesothelium + connective tissue. It excludes the cavity. Serous sac = SM + cavity. Note that the SM is a subtype of wall in FMA. ## Synonyms - * tunica serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * wall of serous sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9581] - * serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serous_membrane] + * tunica serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * wall of serous sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9581 ] + * serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serous_membrane ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A10.615.789 * SCTID:362878009 * TAO:0005425 - * UMLS:C0036760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Serosa] + * UMLS:C0036760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Serosa ] * Wikipedia:Serous_membrane * ZFA:0005425 * http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0000442.md b/md/UBERON/42/UBERON_0000442.md index d42e46127b..dd67a752c3 100644 --- a/md/UBERON/42/UBERON_0000442.md +++ b/md/UBERON/42/UBERON_0000442.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000442 * *Label* = right testicular vein - * *Definition* = A vein that drains the left pampiniform plexus and empties into the left renal vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A vein that drains the left pampiniform plexus and empties into the left renal vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * right spermatic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002220] - * vena testicularis (adrenalis) dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14341] - * vena testicularis dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002679] - * vena testicularis sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002680] + * right spermatic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002220 ] + * vena testicularis (adrenalis) dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14341 ] + * vena testicularis dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002679 ] + * vena testicularis sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002680 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [right testicle](../../UBERON/34/UBERON_0004534.md) and [testicular vein](../../UBERON/44/UBERON_0001144.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0000642.md b/md/UBERON/42/UBERON_0000642.md index 0ebf5d6baf..2810861035 100644 --- a/md/UBERON/42/UBERON_0000642.md +++ b/md/UBERON/42/UBERON_0000642.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000642 * *Label* = suspensory ligament of duodenum - * *Definition* = Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suspensory_muscle_of_duodenum] + * *Definition* = A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suspensory_muscle_of_duodenum ] * *Comment* = an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. ## Synonyms - * ligament of Treitz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20509] - * muscle of Treitz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20509] - * musculus suspensorius duodeni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20509] - * suspensory muscle of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20509] - * musculus suspensorius duodeni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suspensory_muscle_of_duodenum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligament of Treitz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20509 ] + * muscle of Treitz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20509 ] + * musculus suspensorius duodeni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20509 ] + * suspensory muscle of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20509 ] + * musculus suspensorius duodeni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suspensory_muscle_of_duodenum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) and [suspensory ligament](../../UBERON/41/UBERON_0008841.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0000942.md b/md/UBERON/42/UBERON_0000942.md index 4e9a2b3a09..82790b4d97 100644 --- a/md/UBERON/42/UBERON_0000942.md +++ b/md/UBERON/42/UBERON_0000942.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000942 * *Label* = frontal nerve (branch of ophthalmic) - * *Definition* = The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebr superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_nerve] + * *Definition* = The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebr superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_nerve ] ## Synonyms - * frontal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52638] - * nervus frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * frontal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52638 ] + * nervus frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:52638 * SCTID:280219004 - * UMLS:C0228712 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Nerve] + * UMLS:C0228712 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Nerve ] * Wikipedia:Frontal_nerve * http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/45/Gray787.png/200px-Gray787.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001042.md b/md/UBERON/42/UBERON_0001042.md index 0810fc9446..480db51ee8 100644 --- a/md/UBERON/42/UBERON_0001042.md +++ b/md/UBERON/42/UBERON_0001042.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001042 * *Label* = chordate pharynx - * *Definition* = A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.feedexp.org] + * *Definition* = A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.feedexp.org ] * *Comment* = Note that MA/FMA pharynx not part of digestive/alimentary system, we are consistent with this scheme ## Synonyms - * pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46688[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46688, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,7 +27,7 @@ * OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA * SCTID:181211006 * TAO:0000056 - * UMLS:C0031354 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharynx] + * UMLS:C0031354 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharynx ] * VHOG:0000462 * Wikipedia:Pharynx * XAO:0003227 @@ -68,8 +68,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the earliest vertebrates possessed unjointed internal and external branchial arches, and musculature encircling the pharynx.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001142.md b/md/UBERON/42/UBERON_0001142.md index 5969d3b86c..752b6489f7 100644 --- a/md/UBERON/42/UBERON_0001142.md +++ b/md/UBERON/42/UBERON_0001142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001142 * *Label* = left renal vein - * *Definition* = A renal vein that drains the left kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A renal vein that drains the left kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -14,7 +14,7 @@ * MA:0002211 * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA * SCTID:116356005 - * UMLS:C0508001 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Renal_Vein] + * UMLS:C0508001 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Renal_Vein ] * http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png * ncithesaurus:Left_Renal_Vein @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [left kidney](../../UBERON/38/UBERON_0004538.md) and [renal vein](../../UBERON/40/UBERON_0001140.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vein that drains blood from the left kidney into the inferior vena cava[ncithesaurus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001242.md b/md/UBERON/42/UBERON_0001242.md index 0e7736c51b..cf01573365 100644 --- a/md/UBERON/42/UBERON_0001242.md +++ b/md/UBERON/42/UBERON_0001242.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001242 * *Label* = intestinal mucosa - * *Definition* = The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.492.411.369] + * *Definition* = The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.492.411.369 ] ## Synonyms - * bowel mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bowel mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * intestine mucosa - * intestine mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intestine mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucosa of intestine - * mucosa of organ of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica mucosa intestini ## Cross-references @@ -33,7 +33,7 @@ * MA:0001537 * MESH:A03.492.411.369 * SCTID:362080002 - * UMLS:C0021839 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestinal_Mucosa] + * UMLS:C0021839 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestinal_Mucosa ] * ncithesaurus:Intestinal_Mucosa ## Subsets @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001342.md b/md/UBERON/42/UBERON_0001342.md index 1b7fe6c964..00c34ee5d3 100644 --- a/md/UBERON/42/UBERON_0001342.md +++ b/md/UBERON/42/UBERON_0001342.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001342 * *Label* = mesovarium - * *Definition* = The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001566[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesovarium] + * *Definition* = The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001566, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesovarium ] ## Synonyms @@ -16,7 +16,7 @@ * FMA:19815 * SCTID:279914000 * TAO:0000333 - * UMLS:C0230310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesovarian_Ligament] + * UMLS:C0230310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesovarian_Ligament ] * VHOG:0001566 * Wikipedia:Mesovarium * ZFA:0000333 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure consisting of a membrane which suspends the ovaries from the mesial side of the kidney.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mesentery that suspends the ovary from the dorsal wall of the coelom. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.560, see_Kardong_KV][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001442.md b/md/UBERON/42/UBERON_0001442.md index 2a6883a927..b780800de7 100644 --- a/md/UBERON/42/UBERON_0001442.md +++ b/md/UBERON/42/UBERON_0001442.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001442 * *Label* = skeleton of manus - * *Definition* = Subdivision of skeleton that is the collection of all skeletal elements in a manus, which is the distal section of the anterior forelimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the wrist, palm, and fingers)[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton that is the collection of all skeletal elements in a manus, which is the distal section of the anterior forelimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the wrist, palm, and fingers)[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = here 'manus' includes both the wrist region and hand proper ## Synonyms * anterior autopodium skeleton - * bones of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24159] + * bones of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24159 ] * fore autopod skeleton * forelimb autopod skeleton - * hand region skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002227] - * hand skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24159] + * hand region skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002227 ] + * hand skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24159 ] * manual skeleton * manus skeleton - * ossa manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24159[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of bones of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24159] - * skeleton of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24159] - * anterior autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] - * manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * ossa manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24159, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of bones of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24159 ] + * skeleton of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24159 ] + * anterior autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] + * manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001542.md b/md/UBERON/42/UBERON_0001542.md index 32f9623a54..fbb5472b78 100644 --- a/md/UBERON/42/UBERON_0001542.md +++ b/md/UBERON/42/UBERON_0001542.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001542 * *Label* = inguinal lymph node - * *Definition* = A lymph node in the inguinal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_lymph_node] + * *Definition* = A lymph node in the inguinal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_lymph_node ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:44226 * MA:0000737 * SCTID:181762005 - * UMLS:C0729596 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inguinal_Lymph_Node] + * UMLS:C0729596 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inguinal_Lymph_Node ] * Wikipedia:Inguinal_lymph_node * ncithesaurus:Inguinal_Lymph_Node @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inguinal part of abdomen](../../UBERON/37/UBERON_0008337.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001542 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001642.md b/md/UBERON/42/UBERON_0001642.md index a399318a9d..d568fdc8bb 100644 --- a/md/UBERON/42/UBERON_0001642.md +++ b/md/UBERON/42/UBERON_0001642.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001642 * *Label* = superior sagittal sinus - * *Definition* = The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_sagittal_sinus] + * *Definition* = The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_sagittal_sinus ] ## Synonyms - * sinus sagittalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_sagittal_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus sagittalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_sagittal_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,7 +15,7 @@ * MA:0001867 * OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA * SCTID:362075006 - * UMLS:C0226859 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Sagittal_Sinus] + * UMLS:C0226859 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Sagittal_Sinus ] * Wikipedia:Superior_sagittal_sinus * http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001742.md b/md/UBERON/42/UBERON_0001742.md index 506e39b360..fb36fffde2 100644 --- a/md/UBERON/42/UBERON_0001742.md +++ b/md/UBERON/42/UBERON_0001742.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001742 * *Label* = epiglottic cartilage - * *Definition* = the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002259] + * *Definition* = the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002259 ] * *Comment* = AO notes: laryngeal cartilage in MP ## Synonyms @@ -14,7 +14,7 @@ * FMA:55112 * MA:0001763 * SCTID:278990001 - * UMLS:C0458526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epiglottic_Cartilage] + * UMLS:C0458526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epiglottic_Cartilage ] * ncithesaurus:Epiglottic_Cartilage ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001842.md b/md/UBERON/42/UBERON_0001842.md index 0a43a27e0e..3c25a6883a 100644 --- a/md/UBERON/42/UBERON_0001842.md +++ b/md/UBERON/42/UBERON_0001842.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001842 * *Label* = posterior semicircular canal - * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_semicircular_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_semicircular_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editor notes: verify AAO ## Synonyms - * canalis semicircularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_semicircular_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis semicircularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_semicircular_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * caudal vertical semicircular canal - * pars superior of labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000420] + * pars superior of labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000420 ] * posterior semicircular canals * posterior semicircular duct @@ -24,7 +24,7 @@ * MA:0001209 * SCTID:279762003 * TAO:0000262 - * UMLS:C0229454 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Semicircular_Canal] + * UMLS:C0229454 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Semicircular_Canal ] * Wikipedia:Posterior_semicircular_canal * ZFA:0000262 * http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from posterior semicircular canal primordium (TAO:0000412)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0001942.md b/md/UBERON/42/UBERON_0001942.md index 66e1ebf4eb..9453d75294 100644 --- a/md/UBERON/42/UBERON_0001942.md +++ b/md/UBERON/42/UBERON_0001942.md @@ -8,15 +8,15 @@ ## Synonyms * medial habenula - * nucleus habenulae medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1431] - * nucleus habenularis medialis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1431] - * nucleus habenularis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1431] - * nucleus habenularis medialis epithalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1431] - * MHb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1431[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ganglion intercrurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion interpedunculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei habenulares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus habenularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus habenulae medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1431 ] + * nucleus habenularis medialis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1431 ] + * nucleus habenularis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1431 ] + * nucleus habenularis medialis epithalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1431 ] + * MHb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1431, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ganglion intercrurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion interpedunculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei habenulares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus habenularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,8 @@ * FMA:62373 * MA:0000832 * NIF_GrossAnatomy:birnlex_1431 - * NeuroNames:294 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1431] - * UMLS:C0228389 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1431] + * NeuroNames:294 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1431 ] + * UMLS:C0228389 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1431 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002042.md b/md/UBERON/42/UBERON_0002042.md index 261a57ea06..b6854c71dc 100644 --- a/md/UBERON/42/UBERON_0002042.md +++ b/md/UBERON/42/UBERON_0002042.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002042 * *Label* = lymphatic vessel endothelium - * *Definition* = An endothelium that is part of a lymphatic vessel [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a lymphatic vessel [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endothelium of lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68444] - * lymph vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004303] + * endothelium of lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68444 ] + * lymph vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004303 ] * lymphatic vessel endothelium ## Cross-references @@ -21,7 +21,7 @@ * MA:0000750 * MESH:A10.272.491.332 * TAO:0005258 - * UMLS:C1180786 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphatic_Vessel_Endothelium] + * UMLS:C1180786 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphatic_Vessel_Endothelium ] * ZFA:0005258 * ncithesaurus:Lymphatic_Vessel_Endothelium @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The vascular endothelium that lines the lymph vessels.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002142.md b/md/UBERON/42/UBERON_0002142.md index 0ba8b94543..65e8c6b2bd 100644 --- a/md/UBERON/42/UBERON_0002142.md +++ b/md/UBERON/42/UBERON_0002142.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002142 * *Label* = pedunculopontine tegmental nucleus - * *Definition* = The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedunculopontine_tegmental_nucleus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/p/obo/mouse-anatomy-requests/81/] + * *Definition* = The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedunculopontine_tegmental_nucleus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/p/obo/mouse-anatomy-requests/81/ ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * peduncular pontine nucleus * pedunculopontine nucleus - * PPTg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1437[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus pedunculopontinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:504[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tegmenti pedunculopontinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:504[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * PPTg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1437, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus pedunculopontinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:504, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tegmenti pedunculopontinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:504, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,8 +23,8 @@ * FMA:72429 * MA:0001020 * NIF_GrossAnatomy:birnlex_1437 - * NeuroNames:504 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1437] - * UMLS:C0262306 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1437] + * NeuroNames:504 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1437 ] + * UMLS:C0262306 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1437 ] * Wikipedia:Pedunculopontine_tegmental_nucleus ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002242.md b/md/UBERON/42/UBERON_0002242.md index bb6ee4129e..a3a630e1b9 100644 --- a/md/UBERON/42/UBERON_0002242.md +++ b/md/UBERON/42/UBERON_0002242.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002242 * *Label* = nucleus pulposus - * *Definition* = a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_pulposus] + * *Definition* = a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_pulposus ] * *Comment* = AO notes: we group two FMA classes together ## Synonyms - * nucleus pulposus (diskus intervertebralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13550] + * nucleus pulposus (diskus intervertebralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13550 ] * pulpy nucleus - * nucleus propulsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_pulposus] - * nucleus propulsus of intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_pulposus] - * nucleus pulposus of intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13550] + * nucleus propulsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_pulposus ] + * nucleus propulsus of intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_pulposus ] + * nucleus pulposus of intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13550 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002342.md b/md/UBERON/42/UBERON_0002342.md index d8e9a05453..d0d57df83a 100644 --- a/md/UBERON/42/UBERON_0002342.md +++ b/md/UBERON/42/UBERON_0002342.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002342 * *Label* = neural crest - * *Definition* = A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009846] + * *Definition* = A specialized region of ectoderm found between the neural ectoderm (neural plate) and non-neural ectoderm and composed of highly migratory pluripotent cells that delaminate in early embryonic development from the dorsal neural tube and give rise to an astounding variety of differentiated cell types[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009846 ] * *Comment* = Editor note: consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams). Taxon notes: . Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells. ## Synonyms - * crista neuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_crest[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neural crest material [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000057] + * crista neuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_crest, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neural crest material [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000057 ] ## Cross-references @@ -26,7 +26,7 @@ * NeuroNames:1366 * SCTID:361462002 * TAO:0000045 - * UMLS:C0027789 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Crest] + * UMLS:C0027789 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Crest ] * VHOG:0000057 * Wikipedia:Neural_crest * XAO:0000048 @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fossils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived structures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude that the neural crest is a vertebrate novelty, but that neural crest cells and their derivatives evolved and diversified in a step-wise fashion - first by elaboration of neural plate border cells, then by the innovation or co-option of new or ancient metazoan cell fates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002442.md b/md/UBERON/42/UBERON_0002442.md index 00b6a47ff6..f2feb99199 100644 --- a/md/UBERON/42/UBERON_0002442.md +++ b/md/UBERON/42/UBERON_0002442.md @@ -7,8 +7,8 @@ ## Synonyms * right axillary neural trunk - * trunk of right axillary nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65265] - * circumflex nerve trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001175] + * trunk of right axillary nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65265 ] + * circumflex nerve trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001175 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002542.md b/md/UBERON/42/UBERON_0002542.md index 6e5fea37ca..1454304acc 100644 --- a/md/UBERON/42/UBERON_0002542.md +++ b/md/UBERON/42/UBERON_0002542.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002542 * *Label* = scale - * *Definition* = A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scale_(zoology)] + * *Definition* = A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scale_(zoology) ] * *Comment* = Usage notes: currently defined in a very inclusive fashion - may be obsoleted and replaced by more specific classes in future versions. The TAO, VSAO amd ZFA classes by this name are classified as 'dermal scales'. Can also be classified by composition - e.g. pangolin keratin scales. ## Synonyms - * scale tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005055] - * scales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * scale tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005055 ] + * scales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002542 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002642.md b/md/UBERON/42/UBERON_0002642.md index c786a56bd9..e597be5452 100644 --- a/md/UBERON/42/UBERON_0002642.md +++ b/md/UBERON/42/UBERON_0002642.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002642 * *Label* = cuneate fasciculus of medulla - * *Definition* = A cuneate fasciculus that is part of a medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cuneate fasciculus that is part of a medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - change definition to be the *whole* of the CF in the MO. isa parentage to fasciculus of brain should be inferred ## Synonyms - * nucleus pulvinaris oromedialis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2190[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus pulvinaris oromedialis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2190, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:cu * FMA:72623 * NIF_GrossAnatomy:birnlex_1242 - * NeuroNames:2190 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1242] - * UMLS:C0228521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1242] + * NeuroNames:2190 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1242 ] + * UMLS:C0228521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1242 ] ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cuneate fasciculus](../../UBERON/32/UBERON_0005832.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002742.md b/md/UBERON/42/UBERON_0002742.md index bbb3232265..0bef79a041 100644 --- a/md/UBERON/42/UBERON_0002742.md +++ b/md/UBERON/42/UBERON_0002742.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002742 * *Label* = lamina of septum pellucidum - * *Definition* = One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_pellucidum#Layers] + * *Definition* = One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_pellucidum#Layers ] * *Comment* = editor note ## Synonyms - * laminae septi pellucidi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * septum pellucidum lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62472] - * lamina of the septum pellucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:258] - * lamina septi pellucidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:258[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * laminae septi pellucidi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * septum pellucidum lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62472 ] + * lamina of the septum pellucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:258 ] + * lamina septi pellucidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:258, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:lsp * FMA:62472 * NIF_GrossAnatomy:birnlex_1554 - * NeuroNames:258 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1554] + * NeuroNames:258 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1554 ] * SCTID:12164006 - * UMLS:C0152278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1554] + * UMLS:C0152278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1554 ] * Wikipedia:Septum_pellucidum#Layers ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002842.md b/md/UBERON/42/UBERON_0002842.md index eb33ef3910..2dedc533ed 100644 --- a/md/UBERON/42/UBERON_0002842.md +++ b/md/UBERON/42/UBERON_0002842.md @@ -6,15 +6,15 @@ ## Synonyms - * fifth cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6318] - * fifth cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6318] + * fifth cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6318 ] + * fifth cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6318 ] ## Cross-references * EMAPA:25158 * FMA:6318 * NIF_GrossAnatomy:birnlex_2607 - * UMLS:C0501696 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2607] + * UMLS:C0501696 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2607 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0002942.md b/md/UBERON/42/UBERON_0002942.md index 4a1af26cd5..9cd2517743 100644 --- a/md/UBERON/42/UBERON_0002942.md +++ b/md/UBERON/42/UBERON_0002942.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002942 * *Label* = ventral posterolateral nucleus - * *Definition* = The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_posterolateral_nucleus] + * *Definition* = The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_posterolateral_nucleus ] ## Synonyms - * nucleus ventralis posterior lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * nucleus ventralis posterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * nucleus ventralis posterolateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * nucleus ventralis thalami posterior lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * posterolateral ventral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62200] - * posterolateral ventral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * ventral posterolateral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62200] - * ventral posterolateral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_737] - * ventral posterolateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62200] - * VPL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_737[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis posterolateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_posterolateral_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral posterior lateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:344] - * ventral posterior lateral nucleus of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPL] - * ventral posterolateral nucleus of the thalamus principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPL] - * ventral posterolateral nucleus of the thalamus, general [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:344] - * ventral posterolateral nucleus of the thalamus, principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPL] - * ventroposterior lateral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPL] - * ventroposterolateral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:344] + * nucleus ventralis posterior lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * nucleus ventralis posterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * nucleus ventralis posterolateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * nucleus ventralis thalami posterior lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * posterolateral ventral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62200 ] + * posterolateral ventral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * ventral posterolateral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62200 ] + * ventral posterolateral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_737 ] + * ventral posterolateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62200 ] + * VPL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_737, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis posterolateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_posterolateral_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral posterior lateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:344 ] + * ventral posterior lateral nucleus of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPL ] + * ventral posterolateral nucleus of the thalamus principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPL ] + * ventral posterolateral nucleus of the thalamus, general [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:344 ] + * ventral posterolateral nucleus of the thalamus, principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPL ] + * ventroposterior lateral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPL ] + * ventroposterolateral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:344 ] ## Cross-references @@ -32,9 +32,9 @@ * BAMS:VPL * FMA:62200 * NIF_GrossAnatomy:birnlex_737 - * NeuroNames:344 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_737] + * NeuroNames:344 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_737 ] * SCTID:369171001 - * UMLS:C0228337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_737] + * UMLS:C0228337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_737 ] * Wikipedia:Ventral_posterolateral_nucleus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003142.md b/md/UBERON/42/UBERON_0003142.md index 3fd81332bf..e271551964 100644 --- a/md/UBERON/42/UBERON_0003142.md +++ b/md/UBERON/42/UBERON_0003142.md @@ -6,7 +6,7 @@ ## Synonyms - * PP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00002952] + * PP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00002952 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003242.md b/md/UBERON/42/UBERON_0003242.md index 9abea13680..5618b20a26 100644 --- a/md/UBERON/42/UBERON_0003242.md +++ b/md/UBERON/42/UBERON_0003242.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003242 * *Label* = epithelium of saccule - * *Definition* = An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a saccule of membranous labyrinth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check relationships w.r.t macula ## Synonyms - * epithelial tissue of membranous labyrinth saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of saccule of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of sacculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of membranous labyrinth saccule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of saccule of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of sacculus (labyrinthus vestibularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous labyrinth saccule epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * membranous labyrinth saccule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccule epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccule of membranous labyrinth epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * saccule of membranous labyrinth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sacculus (labyrinthus vestibularis) epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sacculus (labyrinthus vestibularis) epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of macula of saccule of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75605] + * epithelial tissue of membranous labyrinth saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of saccule of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of sacculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of membranous labyrinth saccule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of saccule of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of sacculus (labyrinthus vestibularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous labyrinth saccule epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * membranous labyrinth saccule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccule epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccule of membranous labyrinth epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * saccule of membranous labyrinth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sacculus (labyrinthus vestibularis) epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sacculus (labyrinthus vestibularis) epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of macula of saccule of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75605 ] ## Cross-references @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [saccule of membranous labyrinth](../../UBERON/54/UBERON_0001854.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003342.md b/md/UBERON/42/UBERON_0003342.md index e7a71be6e3..943f5dbef1 100644 --- a/md/UBERON/42/UBERON_0003342.md +++ b/md/UBERON/42/UBERON_0003342.md @@ -3,50 +3,50 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003342 * *Label* = mucosa of anal canal - * *Definition* = A mucosa that is part of an anal canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of an anal canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anal canal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal viewed anatomically mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal viewed anatomically mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal viewed anatomically mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal canal viewed anatomically organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74654] - * anal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74654] - * anal region mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anal region organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical anal canal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical anal canal mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical anal canal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical anal canal organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of anal canal viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of anatomical anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of anal canal viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of anatomical anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of anal canal viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of anatomical anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of anal canal viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of anatomical anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anal canal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal viewed anatomically mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal viewed anatomically mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal viewed anatomically mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal canal viewed anatomically organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74654 ] + * anal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74654 ] + * anal region mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anal region organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical anal canal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical anal canal mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical anal canal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical anal canal organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of anal canal viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of anatomical anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of anal canal viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of anatomical anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of anal canal viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of anatomical anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of anal canal viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of anatomical anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:27531 * FMA:74654 * SCTID:362170004 - * UMLS:C0227414 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Mucosa] + * UMLS:C0227414 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Mucosa ] * ncithesaurus:Anal_Mucosa ## Subsets @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal canal](../../UBERON/59/UBERON_0000159.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003442.md b/md/UBERON/42/UBERON_0003442.md index 0421212376..57373d246e 100644 --- a/md/UBERON/42/UBERON_0003442.md +++ b/md/UBERON/42/UBERON_0003442.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003442 * *Label* = hindlimb nerve - * *Definition* = A nerve that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003542.md b/md/UBERON/42/UBERON_0003542.md index c7f5c600dc..7c311e38cc 100644 --- a/md/UBERON/42/UBERON_0003542.md +++ b/md/UBERON/42/UBERON_0003542.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003542 * *Label* = right lung respiratory bronchiole - * *Definition* = A respiratory bronchiole that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A respiratory bronchiole that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus respiratorius of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus respiratorius of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001788 - * UMLS:C1709960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung_Respiratory_Bronchiole] + * UMLS:C1709960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung_Respiratory_Bronchiole ] * ncithesaurus:Right_Lung_Respiratory_Bronchiole ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [respiratory bronchiole](../../UBERON/88/UBERON_0002188.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003542 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003642.md b/md/UBERON/42/UBERON_0003642.md index d7073c3b1b..95e9720e4c 100644 --- a/md/UBERON/42/UBERON_0003642.md +++ b/md/UBERON/42/UBERON_0003642.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003642 * *Label* = pedal digit 3 phalanx - * *Definition* = A phalanx that is part of a foot digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a foot digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit long bone of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001383] - * hind limb digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * long bone of digit of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32900] - * third toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32900] - * foot digit 3 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit long bone of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001383 ] + * hind limb digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * long bone of digit of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32900 ] + * third toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32900 ] + * foot digit 3 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:32900 * MA:0001383 * SCTID:361802007 - * UMLS:C1708084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_3_Phalanx] + * UMLS:C1708084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_3_Phalanx ] * ncithesaurus:Foot_Digit_3_Phalanx ## Subsets @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003842.md b/md/UBERON/42/UBERON_0003842.md index 53a0d41e39..3f4398d254 100644 --- a/md/UBERON/42/UBERON_0003842.md +++ b/md/UBERON/42/UBERON_0003842.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003842 * *Label* = neural tube lumen - * *Definition* = An anatomical space that surrounded_by a neural tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * cavity of neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lumen of neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * neural tube neural lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001269] - * neural lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:2889] - * neurocoel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001119] + * cavity of neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lumen of neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * neural tube neural lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001269 ] + * neural lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:2889 ] + * neurocoel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001119 ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [surrounded_by](../../RO/19/RO_0002219.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005713 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0003942.md b/md/UBERON/42/UBERON_0003942.md index 0758a2af81..0390a19e2c 100644 --- a/md/UBERON/42/UBERON_0003942.md +++ b/md/UBERON/42/UBERON_0003942.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003942 * *Label* = somatic sensory system - * *Definition* = the neural tissue involved in the transmission of sensory signals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000959] + * *Definition* = the neural tissue involved in the transmission of sensory signals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000959 ] * *Comment* = TODO - check ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [somatic nervous system](../../UBERON/12/UBERON_0000012.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004042.md b/md/UBERON/42/UBERON_0004042.md index d0be2311b3..6da9eae0ee 100644 --- a/md/UBERON/42/UBERON_0004042.md +++ b/md/UBERON/42/UBERON_0004042.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004042 * *Label* = spleen secondary B follicle - * *Definition* = the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008472] + * *Definition* = the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008472 ] ## Synonyms - * secondary spleen B cell follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * splenic secondary B cell follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008472] + * secondary spleen B cell follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * splenic secondary B cell follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008472 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) and [secondary nodular lymphoid tissue](../../UBERON/45/UBERON_0001745.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004142.md b/md/UBERON/42/UBERON_0004142.md index 9028141840..c9845a901b 100644 --- a/md/UBERON/42/UBERON_0004142.md +++ b/md/UBERON/42/UBERON_0004142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004142 * *Label* = outflow tract septum - * *Definition* = The outflow tract septum is a partition in the outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003148] + * *Definition* = The outflow tract septum is a partition in the outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003148 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac septum](../../UBERON/99/UBERON_0002099.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004242.md b/md/UBERON/42/UBERON_0004242.md index 51c21b5f47..514b2ceb8c 100644 --- a/md/UBERON/42/UBERON_0004242.md +++ b/md/UBERON/42/UBERON_0004242.md @@ -3,38 +3,38 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004242 * *Label* = bronchus smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchi involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001840 - * UMLS:C1707055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Smooth_Muscle_Tissue] + * UMLS:C1707055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Smooth_Muscle_Tissue ] * ncithesaurus:Bronchus_Smooth_Muscle_Tissue ## Subsets @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004442.md b/md/UBERON/42/UBERON_0004442.md index 920b89f5a4..95caee3d5f 100644 --- a/md/UBERON/42/UBERON_0004442.md +++ b/md/UBERON/42/UBERON_0004442.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004442 * *Label* = proximal epiphysis of proximal phalanx of manual digit 4 - * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of proximal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523] - * basal epiphysis of proximal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523] - * base of proximal phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523] - * base of proximal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523] - * base of proximal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523] - * proximal epiphysis of proximal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37523[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of proximal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523 ] + * basal epiphysis of proximal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523 ] + * base of proximal phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523 ] + * base of proximal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523 ] + * base of proximal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523 ] + * proximal epiphysis of proximal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37523, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manual digit 4](../../UBERON/30/UBERON_0004330.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004642.md b/md/UBERON/42/UBERON_0004642.md index c01c80ca31..0f206f1200 100644 --- a/md/UBERON/42/UBERON_0004642.md +++ b/md/UBERON/42/UBERON_0004642.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004642 * *Label* = third ventricle ependyma - * *Definition* = An ependyma that is part of a third ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ependyma that is part of a third ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd ventricle ependyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000882] - * ependyma of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000882] + * 3rd ventricle ependyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000882 ] + * ependyma of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000882 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ependyma](../../UBERON/70/UBERON_0004670.md) and [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004742.md b/md/UBERON/42/UBERON_0004742.md index ffe958d482..3434536f04 100644 --- a/md/UBERON/42/UBERON_0004742.md +++ b/md/UBERON/42/UBERON_0004742.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004742 * *Label* = dentary - * *Definition* = The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001022] + * *Definition* = The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001022 ] * *Comment* = Taxon notes: In lobe-finned fishes and the early fossil tetrapods, the bone homologous to the mandible of mammals is merely the largest of several bones in the lower jaw. In such animals, it is referred to as the dentary bone, and forms the body of the outer surface of the jaw. It is bordered below by a number of splenial bones, while the angle of the jaw is formed by a lower angular bone and a suprangular bone just above it. The inner surface of the jaw is lined by a prearticular bone, while the articular bone forms the articulation with the skull proper. Finally a set of three narrow coronoid bones lie above the prearticular bone. As the name implies, the majority of the teeth are attached to the dentary, but there are commonly also teeth on the coronoid bones, and sometimes on the prearticular as well. This complex primitive pattern has, however, been simplified to various degrees in the great majority of vertebrates, as bones have either fused or vanished entirely. In teleosts, only the dentary, articular, and angular bones remain, while in living amphibians, the dentary is accompanied only by the prearticular, and, in salamanders, one of the coronoids. The lower jaw of reptiles has only a single coronoid and splenial, but retains all the other primitive bones except the prearticular. ## Synonyms - * dentaries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000191[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * dentary bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000191] - * dentale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000124] - * os dentale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000124] - * sur-angulaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000124] + * dentaries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000191, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * dentary bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000191 ] + * dentale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000124 ] + * os dentale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000124 ] + * sur-angulaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000124 ] ## Cross-references @@ -50,8 +50,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Of all these bones [dentary, splenials, coronoids, angular, surangular and prearticular], only the dentary remains in the lower jaw of a mammal.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0004942.md b/md/UBERON/42/UBERON_0004942.md index 59a531917c..c07f2fbc2b 100644 --- a/md/UBERON/42/UBERON_0004942.md +++ b/md/UBERON/42/UBERON_0004942.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004942 * *Label* = submucosa of left hepatic duct - * *Definition* = A submucosa that is part of a left hepatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a left hepatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left hepatic duct submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left hepatic ductal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18017] + * left hepatic duct submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left hepatic ductal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18017 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left hepatic duct](../../UBERON/77/UBERON_0001177.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005042.md b/md/UBERON/42/UBERON_0005042.md index 8dc8167090..f150d6e470 100644 --- a/md/UBERON/42/UBERON_0005042.md +++ b/md/UBERON/42/UBERON_0005042.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005042 * *Label* = inner epithelial layer of tympanic membrane - * *Definition* = A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: in FMA this is classified as a mucosa ## Synonyms - * mucosa of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56844] - * mucous layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56844] - * mucous stratum of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56844] - * tympanic membrane external middle ear cavity epithelial component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tympanic membrane mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56844] + * mucosa of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56844 ] + * mucous layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56844 ] + * mucous stratum of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56844 ] + * tympanic membrane external middle ear cavity epithelial component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tympanic membrane mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56844 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tympanic cavity epithelium](../../UBERON/63/UBERON_0010063.md) and [tympanic membrane epithelium](../../UBERON/47/UBERON_0009647.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005242.md b/md/UBERON/42/UBERON_0005242.md index c419468853..5922ed018f 100644 --- a/md/UBERON/42/UBERON_0005242.md +++ b/md/UBERON/42/UBERON_0005242.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005242 * *Label* = obsolete apical ectodermal ridge hindlimb - * *Definition* = A hindlimb that is part of an apical ectodermal ridge [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hindlimb that is part of an apical ectodermal ridge [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0001066 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005242 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_0005342.md b/md/UBERON/42/UBERON_0005342.md index 65a58bcb8a..42bef9ccd9 100644 --- a/md/UBERON/42/UBERON_0005342.md +++ b/md/UBERON/42/UBERON_0005342.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005342 * *Label* = malleus head - * *Definition* = rounded portion of the malleus that articulates with the body of the incus[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008379] + * *Definition* = rounded portion of the malleus that articulates with the body of the incus[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008379 ] ## Synonyms - * head of malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52761] + * head of malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52761 ] ## Cross-references @@ -22,7 +22,7 @@ * [zone of bone organ](../../UBERON/13/UBERON_0005913.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) ## Equivalencies @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005442.md b/md/UBERON/42/UBERON_0005442.md index 72c0b56338..d3888de3f7 100644 --- a/md/UBERON/42/UBERON_0005442.md +++ b/md/UBERON/42/UBERON_0005442.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005442 * *Label* = external oblique - * *Definition* = The external oblique muscle (of the abdomen) (also external abdominal oblique muscle) is the largest and the most superficial (outermost) of the three flat muscles of the lateral anterior abdomen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] + * *Definition* = The external oblique muscle (of the abdomen) (also external abdominal oblique muscle) is the largest and the most superficial (outermost) of the three flat muscles of the lateral anterior abdomen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] ## Synonyms - * abdominal external oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000788] - * external abdominal oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13335] - * external oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * obliquus externus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002345] - * external abdominal oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * external abdominal oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * external oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * external oblique abdominal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * external oblique abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * external oblique abdominis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * m. obliquus externus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oblique strength [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * obliquus abdominis externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * obliquus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * obliquus externus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] - * obliquus externus abdominis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_external_oblique_muscle] + * abdominal external oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000788 ] + * external abdominal oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13335 ] + * external oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * obliquus externus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002345 ] + * external abdominal oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * external abdominal oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * external oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * external oblique abdominal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * external oblique abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * external oblique abdominis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * m. obliquus externus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oblique strength [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * obliquus abdominis externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * obliquus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * obliquus externus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] + * obliquus externus abdominis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_external_oblique_muscle ] ## Cross-references @@ -32,7 +32,7 @@ * FMA:13335 * MA:0002345 * SCTID:244946005 - * UMLS:C0224375 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Oblique_Muscle] + * UMLS:C0224375 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Oblique_Muscle ] * VHOG:0000788 * Wikipedia:Abdominal_external_oblique_muscle * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005642.md b/md/UBERON/42/UBERON_0005642.md index 09486f8e4e..f4daf3479a 100644 --- a/md/UBERON/42/UBERON_0005642.md +++ b/md/UBERON/42/UBERON_0005642.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005642 * *Label* = ultimobranchial body epithelium - * *Definition* = An epithelium that is part of a ultimobranchial body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a ultimobranchial body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in EHDAA2, develops_from ventral 4th arch branchial pouch endoderm. Kardong: develops from 5th pouch. PMID:16313389: the most posterior pouch generates the ultimobranchial bodies in most vertebrate classes, mammals do not form this structure. ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ultimobranchial body](../../UBERON/92/UBERON_0003092.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005742.md b/md/UBERON/42/UBERON_0005742.md index 627c9c6659..852f940449 100644 --- a/md/UBERON/42/UBERON_0005742.md +++ b/md/UBERON/42/UBERON_0005742.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005742 * *Label* = adventitia - * *Definition* = An outermost connective tissue covering of an organ, vessel, or other structure[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adventitia] + * *Definition* = An outermost connective tissue covering of an organ, vessel, or other structure[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adventitia ] ## Synonyms - * tunica advetitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adventitia] - * tunica externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45635] + * tunica advetitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adventitia ] + * tunica externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45635 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005842.md b/md/UBERON/42/UBERON_0005842.md index 4dbd435c09..b1fd924b14 100644 --- a/md/UBERON/42/UBERON_0005842.md +++ b/md/UBERON/42/UBERON_0005842.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005842 * *Label* = lumbar spinal cord dorsal column - * *Definition* = A subdivision of spinal cord dorsal column that is part of a lumbar spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord dorsal column that is part of a lumbar spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dorsal funiculus of lumbar segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258180] - * dorsal white column of lumbar segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258180] - * lumbar segment of dorsal funiculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258180] - * lumbar segment of gracile fasciculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258180] - * lumbar spinal cord posterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_834] + * dorsal funiculus of lumbar segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258180 ] + * dorsal white column of lumbar segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258180 ] + * lumbar segment of dorsal funiculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258180 ] + * lumbar segment of gracile fasciculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258180 ] + * lumbar spinal cord posterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_834 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar spinal cord](../../UBERON/92/UBERON_0002792.md) and [subdivision of spinal cord dorsal column](../../UBERON/79/UBERON_0006079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0005942.md b/md/UBERON/42/UBERON_0005942.md index a10bd75a44..7c143e606e 100644 --- a/md/UBERON/42/UBERON_0005942.md +++ b/md/UBERON/42/UBERON_0005942.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005942 * *Label* = hair outer root sheath - * *Definition* = It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Keratin.com:http://www.keratin.com/[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] + * *Definition* = It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Keratin.com:http://www.keratin.com/, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 ] ## Synonyms - * external root sheath of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70943] - * hair follicle outer root sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003969] - * outer root sheath of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70943] - * ORS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003969] - * outer root sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003969] + * external root sheath of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70943 ] + * hair follicle outer root sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003969 ] + * outer root sheath of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70943 ] + * ORS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003969 ] + * outer root sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003969 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006142.md b/md/UBERON/42/UBERON_0006142.md index 3273d47494..c5065b99a9 100644 --- a/md/UBERON/42/UBERON_0006142.md +++ b/md/UBERON/42/UBERON_0006142.md @@ -6,7 +6,7 @@ ## Synonyms - * common plantar vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002134] + * common plantar vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002134 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006242.md b/md/UBERON/42/UBERON_0006242.md index 7a14112237..83052b24a7 100644 --- a/md/UBERON/42/UBERON_0006242.md +++ b/md/UBERON/42/UBERON_0006242.md @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006342.md b/md/UBERON/42/UBERON_0006342.md index ded1f3061a..43d02eb667 100644 --- a/md/UBERON/42/UBERON_0006342.md +++ b/md/UBERON/42/UBERON_0006342.md @@ -7,7 +7,7 @@ ## Synonyms - * left hepatic recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000444] + * left hepatic recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000444 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006442.md b/md/UBERON/42/UBERON_0006442.md index 6518d29206..5c7e1094f1 100644 --- a/md/UBERON/42/UBERON_0006442.md +++ b/md/UBERON/42/UBERON_0006442.md @@ -7,7 +7,7 @@ ## Synonyms * hepatic recess - * subhepatic space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20676] + * subhepatic space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20676 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006542.md b/md/UBERON/42/UBERON_0006542.md index 80b0df9f56..07c3150106 100644 --- a/md/UBERON/42/UBERON_0006542.md +++ b/md/UBERON/42/UBERON_0006542.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006542 * *Label* = outer medulla outer stripe loop of henle - * *Definition* = A loop of Henle that is part of a kidney outer medulla outer stripe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A loop of Henle that is part of a kidney outer medulla outer stripe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [loop of Henle](../../UBERON/88/UBERON_0001288.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney outer medulla outer stripe](../../UBERON/02/UBERON_0004202.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006542 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006642.md b/md/UBERON/42/UBERON_0006642.md index b99d74d336..be40730644 100644 --- a/md/UBERON/42/UBERON_0006642.md +++ b/md/UBERON/42/UBERON_0006642.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006642 * *Label* = muscle layer of oviduct - * *Definition* = A muscle layer that is part of a fallopian tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a fallopian tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle layer of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * muscle layer of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * muscle layer of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * muscular coat of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * muscular layer of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * muscularis of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * tunica muscularis (Tuba uterina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] - * tunica muscularis tubae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine tubal muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18318] + * muscle layer of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * muscle layer of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * muscle layer of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * muscular coat of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * muscular layer of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * muscularis of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * tunica muscularis (Tuba uterina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] + * tunica muscularis tubae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine tubal muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18318 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fallopian tube](../../UBERON/89/UBERON_0003889.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006742.md b/md/UBERON/42/UBERON_0006742.md index 0d6d4f069c..4f29eed4c5 100644 --- a/md/UBERON/42/UBERON_0006742.md +++ b/md/UBERON/42/UBERON_0006742.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006742 * *Label* = canthus - * *Definition* = A canthus is a corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] + * *Definition* = A canthus is a corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] ## Synonyms - * palpebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59222] - * bicanthal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] - * bicanthal plane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] - * canthi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * canthoplasty [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] - * canthorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] - * canthus %28anatomy%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canthus] + * palpebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59222 ] + * bicanthal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] + * bicanthal plane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] + * canthi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * canthoplasty [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] + * canthorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] + * canthus %28anatomy%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canthus ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = canthal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0006842.md b/md/UBERON/42/UBERON_0006842.md index 1c91de3826..7bf98306e3 100644 --- a/md/UBERON/42/UBERON_0006842.md +++ b/md/UBERON/42/UBERON_0006842.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006842 * *Label* = lymphatic capillary - * *Definition* = Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Joins to form the lymphatic vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005252] + * *Definition* = Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Joins to form the lymphatic vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005252 ] * *Comment* = todo - check superclass ## Synonyms - * lymph capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5028] + * lymph capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5028 ] ## Cross-references * FMA:5028 * TAO:0005252 - * UMLS:C0162405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphatic_Capillary] + * UMLS:C0162405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphatic_Capillary ] * ZFA:0005252 * ncithesaurus:Lymphatic_Capillary @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0007142.md b/md/UBERON/42/UBERON_0007142.md index 738e63f5db..33e0113f38 100644 --- a/md/UBERON/42/UBERON_0007142.md +++ b/md/UBERON/42/UBERON_0007142.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007142 * *Label* = left internal carotid artery - * *Definition* = An internal carotid artery that branching_part_of a left common carotid artery plus branches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An internal carotid artery that branching_part_of a left common carotid artery plus branches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arteria caritis interna sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4062] + * arteria caritis interna sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4062 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [branching_part_of](../../RO/80/RO_0002380.md) some [left common carotid artery plus branches](../../UBERON/36/UBERON_0001536.md) and [internal carotid artery](../../UBERON/32/UBERON_0001532.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0007242.md b/md/UBERON/42/UBERON_0007242.md index 4ce6caa2fe..15cbbf3b9d 100644 --- a/md/UBERON/42/UBERON_0007242.md +++ b/md/UBERON/42/UBERON_0007242.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007242 * *Label* = tunica intima of vein - * *Definition* = A tunica intima that is part of a vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica intima that is part of a vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tunica interna (intima)(venae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14353] - * venous intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100032] + * tunica interna (intima)(venae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14353 ] + * venous intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100032 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) and [tunica intima](../../UBERON/23/UBERON_0002523.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0007642.md b/md/UBERON/42/UBERON_0007642.md index 8212a92af7..995c18b327 100644 --- a/md/UBERON/42/UBERON_0007642.md +++ b/md/UBERON/42/UBERON_0007642.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007642 * *Label* = ligamentum arteriosum - * *Definition* = a small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligamentum_arteriosum] + * *Definition* = a small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligamentum_arteriosum ] ## Synonyms - * Botallo's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13421] - * Botallo's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13421] - * Harvey's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13421] - * arterial ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligamentum_arteriosum] + * Botallo's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13421 ] + * Botallo's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13421 ] + * Harvey's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13421 ] + * arterial ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligamentum_arteriosum ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ductus arteriosus](../../UBERON/40/UBERON_0005440.md) and [transformed artery](../../UBERON/91/UBERON_0006591.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0007842.md b/md/UBERON/42/UBERON_0007842.md index 9c61549a34..52102781a2 100644 --- a/md/UBERON/42/UBERON_0007842.md +++ b/md/UBERON/42/UBERON_0007842.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007842 * *Label* = membrane bone - * *Definition* = Bone element that arises as a result of intramembranous ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000023[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Bone element that arises as a result of intramembranous ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000023, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bone element that arises as a result of intramembranous ossification.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Intramembranous bone that forms deep in the organism.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0008242.md b/md/UBERON/42/UBERON_0008242.md index 874b0f0c15..11e9c270e0 100644 --- a/md/UBERON/42/UBERON_0008242.md +++ b/md/UBERON/42/UBERON_0008242.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008242 * *Label* = lower back muscle - * *Definition* = A muscle of back that is part of a lower back. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle of back that is part of a lower back. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle of back](../../UBERON/24/UBERON_0002324.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower back](../../UBERON/62/UBERON_0005462.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0008342.md b/md/UBERON/42/UBERON_0008342.md index 8b76bc0b2a..0666d57d60 100644 --- a/md/UBERON/42/UBERON_0008342.md +++ b/md/UBERON/42/UBERON_0008342.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008342 * *Label* = intestinal villus of duodenum - * *Definition* = An intestinal villus in the duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An intestinal villus in the duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intestinal villus](../../UBERON/13/UBERON_0001213.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0008442.md b/md/UBERON/42/UBERON_0008442.md index 930d3f6fe0..b7b4922224 100644 --- a/md/UBERON/42/UBERON_0008442.md +++ b/md/UBERON/42/UBERON_0008442.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008442 * *Label* = webbed pes - * *Definition* = A pes that has_part a webbed interdigital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pes that has_part a webbed interdigital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * webbed foot - * foot webbing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010121] + * foot webbing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010121 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [webbed interdigital region](../../UBERON/15/UBERON_0006015.md) and [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0008842.md b/md/UBERON/42/UBERON_0008842.md index 8adb6839e5..8462ffcbce 100644 --- a/md/UBERON/42/UBERON_0008842.md +++ b/md/UBERON/42/UBERON_0008842.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008842 * *Label* = suspensory ligament of testis - * *Definition* = The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scrotal_ligament[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=49790] + * *Definition* = The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scrotal_ligament, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=49790 ] ## Synonyms - * scrotal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gubernaculum] + * scrotal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gubernaculum ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [testis](../../UBERON/73/UBERON_0000473.md) and [suspensory ligament](../../UBERON/41/UBERON_0008841.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0008942.md b/md/UBERON/42/UBERON_0008942.md index 7cf1832c40..c5f261fc7f 100644 --- a/md/UBERON/42/UBERON_0008942.md +++ b/md/UBERON/42/UBERON_0008942.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008942 * *Label* = gastropod cerebral ganglion - * *Definition* = The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001843] + * *Definition* = The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001843 ] ## Synonyms - * cerebral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001843] + * cerebral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001843 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008942 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0009042.md b/md/UBERON/42/UBERON_0009042.md index e97236e909..b4835e03ec 100644 --- a/md/UBERON/42/UBERON_0009042.md +++ b/md/UBERON/42/UBERON_0009042.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009042 * *Label* = prostatic venous plexus - * *Definition* = The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_venous_plexus] + * *Definition* = The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_venous_plexus ] ## Synonyms - * plexus venosus prostaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pudendal venous plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:29711] + * plexus venosus prostaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pudendal venous plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:29711 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0009142.md b/md/UBERON/42/UBERON_0009142.md index 028aac645a..4415ed3bdc 100644 --- a/md/UBERON/42/UBERON_0009142.md +++ b/md/UBERON/42/UBERON_0009142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009142 * *Label* = entire embryonic mesenchyme - * *Definition* = Sum total of mesenchyme in the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/7] + * *Definition* = Sum total of mesenchyme in the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/7 ] * *Comment* = consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003313 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0009742.md b/md/UBERON/42/UBERON_0009742.md index cd918d9bcc..6276bf33f3 100644 --- a/md/UBERON/42/UBERON_0009742.md +++ b/md/UBERON/42/UBERON_0009742.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009742 * *Label* = proamniotic cavity - * *Definition* = the cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011197] + * *Definition* = the cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011197 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0009842.md b/md/UBERON/42/UBERON_0009842.md index d4a60fe822..b4a6ad5fce 100644 --- a/md/UBERON/42/UBERON_0009842.md +++ b/md/UBERON/42/UBERON_0009842.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009842 * *Label* = acinus - * *Definition* = An acinus refers to any cluster of cells that resembles a many-lobed 'berry,' such as a raspberry (acinus is Latin for berry). The berry-shaped termination of an exocrine gland, where the secretion is produced is acinar in form, as is the alveolar sac containing multiple alveoli in the lungs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acinus] + * *Definition* = An acinus refers to any cluster of cells that resembles a many-lobed 'berry,' such as a raspberry (acinus is Latin for berry). The berry-shaped termination of an exocrine gland, where the secretion is produced is acinar in form, as is the alveolar sac containing multiple alveoli in the lungs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acinus ] ## Synonyms - * acini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * acini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * glandular acinus ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = acinar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0010042.md b/md/UBERON/42/UBERON_0010042.md index 61914fce84..daad924cb7 100644 --- a/md/UBERON/42/UBERON_0010042.md +++ b/md/UBERON/42/UBERON_0010042.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010042 * *Label* = 1st arch mesenchyme - * *Definition* = Mesenchyme that is part of a pharyngeal arch 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pharyngeal arch 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of 1st arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16128] + * mesenchyme of 1st arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16128 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0010242.md b/md/UBERON/42/UBERON_0010242.md index cea63c6987..6a31d924c9 100644 --- a/md/UBERON/42/UBERON_0010242.md +++ b/md/UBERON/42/UBERON_0010242.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0010742.md b/md/UBERON/42/UBERON_0010742.md index c16c5ab621..4b2b4f3e2e 100644 --- a/md/UBERON/42/UBERON_0010742.md +++ b/md/UBERON/42/UBERON_0010742.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010742 * *Label* = bone of pelvic complex - * *Definition* = A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that the MA class called 'hindlimb bone' belongs here, as it includes bones in the pelvic girdle ## Synonyms - * hindlimb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000660[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003] + * hindlimb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000660, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0010842.md b/md/UBERON/42/UBERON_0010842.md index 264807aaad..0adb52c954 100644 --- a/md/UBERON/42/UBERON_0010842.md +++ b/md/UBERON/42/UBERON_0010842.md @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcaneum endochondral element](../../UBERON/14/UBERON_0015014.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011142.md b/md/UBERON/42/UBERON_0011142.md index f4aea068ab..20f4434b1d 100644 --- a/md/UBERON/42/UBERON_0011142.md +++ b/md/UBERON/42/UBERON_0011142.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011142 * *Label* = axial ossicle - * *Definition* = Ossicle that is part of the axial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000133] + * *Definition* = Ossicle that is part of the axial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000133 ] * *Comment* = Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column. ## Synonyms - * ossicle of axial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ossicle of postcranial-axial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebral ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ossicle of axial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ossicle of postcranial-axial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebral ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ossicle](../../UBERON/11/UBERON_0010911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [postcranial axial skeleton](../../UBERON/90/UBERON_0002090.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011242.md b/md/UBERON/42/UBERON_0011242.md index 0a261bce33..d2357b5fe6 100644 --- a/md/UBERON/42/UBERON_0011242.md +++ b/md/UBERON/42/UBERON_0011242.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011242 * *Label* = ethmoid cartilage - * *Definition* = Region between capsules formed by anterior tips of neurocranial trabeculae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Region between capsules formed by anterior tips of neurocranial trabeculae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = We assume the AAO structure is cartilage ## Synonyms - * ethmoid cartilages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001405[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ethmoid plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001405] + * ethmoid cartilages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001405, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ethmoid plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001405 ] ## Cross-references @@ -29,7 +29,7 @@ * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [basicranium](../../UBERON/17/UBERON_0002517.md) * [part_of](../../BFO/50/BFO_0000050.md) some [ethmoid region](../../UBERON/41/UBERON_0011241.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) * [develops from](../../RO/02/RO_0002202.md) some [neurocranial trabecula](../../UBERON/45/UBERON_0005945.md) ## Equivalencies @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior wall of the braincase.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011342.md b/md/UBERON/42/UBERON_0011342.md index 6010911c66..a561f9021e 100644 --- a/md/UBERON/42/UBERON_0011342.md +++ b/md/UBERON/42/UBERON_0011342.md @@ -6,7 +6,7 @@ ## Synonyms - * mandibular surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57558] + * mandibular surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57558 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011342 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011642.md b/md/UBERON/42/UBERON_0011642.md index 4a38b3ad0e..e9a1bc507a 100644 --- a/md/UBERON/42/UBERON_0011642.md +++ b/md/UBERON/42/UBERON_0011642.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011642 * *Label* = oral epithelium from ectoderm - * *Definition* = An epithelium that develops_from a ectoderm and is part of a oral epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that develops_from a ectoderm and is part of a oral epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral epithelium](../../UBERON/24/UBERON_0002424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011742.md b/md/UBERON/42/UBERON_0011742.md index 9024a2014e..55bb8ff3f0 100644 --- a/md/UBERON/42/UBERON_0011742.md +++ b/md/UBERON/42/UBERON_0011742.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011742 * *Label* = aortic valve leaflet - * *Definition* = A cardiac valve leaflet that is part of a aortic valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac valve leaflet that is part of a aortic valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * aortic valve leaflets [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000819] + * aortic valve leaflets [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000819 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac valve leaflet](../../UBERON/41/UBERON_0011741.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aortic valve](../../UBERON/37/UBERON_0002137.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0011942.md b/md/UBERON/42/UBERON_0011942.md index 73bcc4e005..723fb0216c 100644 --- a/md/UBERON/42/UBERON_0011942.md +++ b/md/UBERON/42/UBERON_0011942.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011942 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_0012142.md b/md/UBERON/42/UBERON_0012142.md index 3db22891b5..92945e1c44 100644 --- a/md/UBERON/42/UBERON_0012142.md +++ b/md/UBERON/42/UBERON_0012142.md @@ -8,7 +8,7 @@ ## Synonyms - * foot proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73084] + * foot proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73084 ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digitopodium region](../../UBERON/40/UBERON_0012140.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012142 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_0012242.md b/md/UBERON/42/UBERON_0012242.md index 255e89243c..276874d1fc 100644 --- a/md/UBERON/42/UBERON_0012242.md +++ b/md/UBERON/42/UBERON_0012242.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012242 * *Label* = internal urethral orifice - * *Definition* = The internal urethral orifice is the opening of the urinary bladder into the urethra. It is placed at the apex of the trigonum vesicae, in the most dependent part of the bladder, and is usually somewhat crescent-shaped; the mucous membrane immediately behind it presents a slight elevation in males, the uvula vesicae, caused by the middle lobe of the prostate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_urethral_orifice] + * *Definition* = The internal urethral orifice is the opening of the urinary bladder into the urethra. It is placed at the apex of the trigonum vesicae, in the most dependent part of the bladder, and is usually somewhat crescent-shaped; the mucous membrane immediately behind it presents a slight elevation in males, the uvula vesicae, caused by the middle lobe of the prostate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_urethral_orifice ] ## Synonyms - * internal meatus of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85263] - * internal urethral orifice of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85263] - * internal urethral ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85263] - * orificium urethrae internum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ostium orificium internum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ostium urethrae internum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_urethral_orifice[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesicourethral orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85263] - * internal urethral ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011782] - * internal urinary meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011782] + * internal meatus of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85263 ] + * internal urethral orifice of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85263 ] + * internal urethral ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85263 ] + * orificium urethrae internum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ostium orificium internum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ostium urethrae internum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_urethral_orifice, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesicourethral orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85263 ] + * internal urethral ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011782 ] + * internal urinary meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011782 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012242 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0012442.md b/md/UBERON/42/UBERON_0012442.md index 3df776a632..606804f723 100644 --- a/md/UBERON/42/UBERON_0012442.md +++ b/md/UBERON/42/UBERON_0012442.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012442 * *Label* = epiploic foramen - * *Definition* = In human anatomy, the omental foramen, is the passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] + * *Definition* = In human anatomy, the omental foramen, is the passage of communication, or foramen, between the general cavity (of the abdomen), and the omental bursa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] ## Synonyms - * aditus to lesser sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14711] - * foramen of Winslow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14711] - * foramen omentale (epiploicum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14711] - * foramen omentale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * omental foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14711] - * bristle in epiploic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] - * epiploic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] - * epiploic foramen of Winslow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] - * foramen epiploicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] - * foramen of winslow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omental_foramen] + * aditus to lesser sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14711 ] + * foramen of Winslow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14711 ] + * foramen omentale (epiploicum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14711 ] + * foramen omentale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * omental foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14711 ] + * bristle in epiploic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] + * epiploic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] + * epiploic foramen of Winslow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] + * foramen epiploicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] + * foramen of winslow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omental_foramen ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0012642.md b/md/UBERON/42/UBERON_0012642.md index be9e6ba932..50b46d8625 100644 --- a/md/UBERON/42/UBERON_0012642.md +++ b/md/UBERON/42/UBERON_0012642.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012642 * *Label* = vestimentum muscle - * *Definition* = The vestimentum is a muscle that the tubeworm uses to anchro itself in the tube. Generates new tube material. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002492[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The vestimentum is a muscle that the tubeworm uses to anchro itself in the tube. Generates new tube material. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002492, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * vestimentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002492] + * vestimentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002492 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0013142.md b/md/UBERON/42/UBERON_0013142.md index dc443fd3e8..10e0fab1e6 100644 --- a/md/UBERON/42/UBERON_0013142.md +++ b/md/UBERON/42/UBERON_0013142.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013142 * *Label* = soleal vein - * *Definition* = A vein that drains the soleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that drains the soleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * soleus vein * vein of soleus muscle - * vena solealis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena solealis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [soleus muscle](../../UBERON/89/UBERON_0001389.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013142 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0013442.md b/md/UBERON/42/UBERON_0013442.md index 76449b0a24..75f9aef127 100644 --- a/md/UBERON/42/UBERON_0013442.md +++ b/md/UBERON/42/UBERON_0013442.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013442 * *Label* = postorbital process - * *Definition* = The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postorbital_process] + * *Definition* = The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postorbital_process ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0013642.md b/md/UBERON/42/UBERON_0013642.md index c4269b105e..56a1b31352 100644 --- a/md/UBERON/42/UBERON_0013642.md +++ b/md/UBERON/42/UBERON_0013642.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0013742.md b/md/UBERON/42/UBERON_0013742.md index 61cb3f9fc7..63325d7956 100644 --- a/md/UBERON/42/UBERON_0013742.md +++ b/md/UBERON/42/UBERON_0013742.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) and [wall of crypt of lieberkuhn](../../UBERON/40/UBERON_0013740.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0014442.md b/md/UBERON/42/UBERON_0014442.md index c6f4f22a1a..66fe8e45ad 100644 --- a/md/UBERON/42/UBERON_0014442.md +++ b/md/UBERON/42/UBERON_0014442.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014442 * *Label* = superior ischial ramus - * *Definition* = The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ramus_of_the_ischium] + * *Definition* = The superior ramus of the ischium (descending ramus) projects downward and backward from the body and presents for examination three surfaces: external, internal, and posterior. The external surface is quadrilateral in shape. It is bounded above by a groove which lodges the tendon of the Obturator externus; below, it is continuous with the inferior ramus; in front it is limited by the posterior margin of the obturator foramen; behind, a prominent margin separates it from the posterior surface. In front of this margin the surface gives origin to the Quadratus femoris, and anterior to this to some of the fibers of origin of the Obturator externus; the lower part of the surface gives origin to part of the Adductor magnus. The internal surface forms part of the bony wall of the lesser pelvis. In front it is limited by the posterior margin of the obturator foramen. Below, it is bounded by a sharp ridge which gives attachment to a falciform prolongation of the sacrotuberous ligament, and, more anteriorly, gives origin to the Transversus perinC&i and Ischiocavernosus. Posteriorly the ramus forms a large swelling, the tuberosity of the ischium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ramus_of_the_ischium ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014442 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0014542.md b/md/UBERON/42/UBERON_0014542.md index 6e89f734d2..d4082f8237 100644 --- a/md/UBERON/42/UBERON_0014542.md +++ b/md/UBERON/42/UBERON_0014542.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014542 * *Label* = cervical spinal cord central canal - * *Definition* = Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1511] + * *Definition* = Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1511 ] ## Synonyms - * cervical spinal cord central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1511[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * cervical spinal cord central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1511, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_1511 * SCTID:280403009 - * UMLS:C0228620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1511] + * UMLS:C0228620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1511 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of spinal cord central canal](../../UBERON/38/UBERON_0014538.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014542 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0014642.md b/md/UBERON/42/UBERON_0014642.md index 2fa6f06bb3..f41f49b8a3 100644 --- a/md/UBERON/42/UBERON_0014642.md +++ b/md/UBERON/42/UBERON_0014642.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014642 * *Label* = vestibulocerebellum - * *Definition* = A phylogenetic subdivision of the cerenellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] + * *Definition* = A phylogenetic subdivision of the cerenellum, the oldest part, which regulates balance and eye movements. It receives vestibular input from both the semicircular canals and from the vestibular nuclei, and sends fibres back to the medial and lateral vestibular nuclei. It also receives visual input from the superior colliculi and from the visual cortex (the latter via the pontine nuclei, forming a cortico-ponto-cerebellar pathway). Lesions of the vestibulocerebellum cause disturbances of balance and gait. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions ] ## Synonyms * archicerebellum - * archaeocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_904] - * archeocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_904] - * archicerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_904] + * archaeocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_904 ] + * archeocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_904 ] + * archicerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_904 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014642 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0014742.md b/md/UBERON/42/UBERON_0014742.md index 7abdb387f7..3bca744c95 100644 --- a/md/UBERON/42/UBERON_0014742.md +++ b/md/UBERON/42/UBERON_0014742.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014742 * *Label* = central nucleus of pallium - * *Definition* = A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A nucleus located in the dorsal pallium that is present in sharks, skates and rays and extends at some levels to the midline.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014742 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0014842.md b/md/UBERON/42/UBERON_0014842.md index 241ba6362c..2b5c16d309 100644 --- a/md/UBERON/42/UBERON_0014842.md +++ b/md/UBERON/42/UBERON_0014842.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014842 * *Label* = pubioischiofemoralis muscle - * *Definition* = A dorsal muscle of lower tetrapods. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A dorsal muscle of lower tetrapods. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014842 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_0015042.md b/md/UBERON/42/UBERON_0015042.md index 1d2151a460..911db0cada 100644 --- a/md/UBERON/42/UBERON_0015042.md +++ b/md/UBERON/42/UBERON_0015042.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015042 * *Label* = manual digit metacarpus endochondral element - * *Definition* = A manual digit metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpus region](../../UBERON/53/UBERON_0004453.md) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md)or[manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md)or[metacarpus skeleton](../../UBERON/44/UBERON_0010544.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015042 + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000342.md b/md/UBERON/42/UBERON_2000342.md index f4bff2b205..040b74fe24 100644 --- a/md/UBERON/42/UBERON_2000342.md +++ b/md/UBERON/42/UBERON_2000342.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000442.md b/md/UBERON/42/UBERON_2000442.md index 8fbcef80d6..255a7d664a 100644 --- a/md/UBERON/42/UBERON_2000442.md +++ b/md/UBERON/42/UBERON_2000442.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000442 * *Label* = supraneural bone - * *Definition* = Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * axonoste libre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * predorsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000442] - * predorsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000442] - * pseudaxonoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000156] - * sn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000442] - * supraneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * supraneurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000442[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * axonoste libre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * predorsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000442 ] + * predorsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000442 ] + * pseudaxonoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000156 ] + * sn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000442 ] + * supraneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * supraneurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000442, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000542.md b/md/UBERON/42/UBERON_2000542.md index 0f738b7d44..b9f40e5fec 100644 --- a/md/UBERON/42/UBERON_2000542.md +++ b/md/UBERON/42/UBERON_2000542.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000642.md b/md/UBERON/42/UBERON_2000642.md index fdc8120026..805c35df27 100644 --- a/md/UBERON/42/UBERON_2000642.md +++ b/md/UBERON/42/UBERON_2000642.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000742.md b/md/UBERON/42/UBERON_2000742.md index 28b12c5974..69e8c0018b 100644 --- a/md/UBERON/42/UBERON_2000742.md +++ b/md/UBERON/42/UBERON_2000742.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000742 * *Label* = epaxial region somite 17 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2000842.md b/md/UBERON/42/UBERON_2000842.md index 09c82b1bb8..0c7a1cc7f4 100644 --- a/md/UBERON/42/UBERON_2000842.md +++ b/md/UBERON/42/UBERON_2000842.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000842[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000842, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_2000942.md b/md/UBERON/42/UBERON_2000942.md index df8ef1d64a..3b417e5f3d 100644 --- a/md/UBERON/42/UBERON_2000942.md +++ b/md/UBERON/42/UBERON_2000942.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003077 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_2001042.md b/md/UBERON/42/UBERON_2001042.md index 66f8f1261e..2761b46c66 100644 --- a/md/UBERON/42/UBERON_2001042.md +++ b/md/UBERON/42/UBERON_2001042.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001042 * *Label* = sclerotome somite 24 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001142.md b/md/UBERON/42/UBERON_2001142.md index 3e1819d96c..45c042c1cd 100644 --- a/md/UBERON/42/UBERON_2001142.md +++ b/md/UBERON/42/UBERON_2001142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001142 * *Label* = tooth 5V - * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 5 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001242.md b/md/UBERON/42/UBERON_2001242.md index e864b0e8cd..58402f04b0 100644 --- a/md/UBERON/42/UBERON_2001242.md +++ b/md/UBERON/42/UBERON_2001242.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001242 * *Label* = ceratobranchial 2 bone - * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001342.md b/md/UBERON/42/UBERON_2001342.md index e278a5ca8a..6c0e87040b 100644 --- a/md/UBERON/42/UBERON_2001342.md +++ b/md/UBERON/42/UBERON_2001342.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001542.md b/md/UBERON/42/UBERON_2001542.md index 2ced1fb8e1..9ee77536df 100644 --- a/md/UBERON/42/UBERON_2001542.md +++ b/md/UBERON/42/UBERON_2001542.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001542 * *Label* = pelvic radial 1 cartilage - * *Definition* = Small cartilage that forms at the posterior and lateral edge of the basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small cartilage that forms at the posterior and lateral edge of the basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001742.md b/md/UBERON/42/UBERON_2001742.md index 47abf555dd..b4c783eef1 100644 --- a/md/UBERON/42/UBERON_2001742.md +++ b/md/UBERON/42/UBERON_2001742.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001742 * *Label* = auditory foramen - * *Definition* = Foramen through which cranial nerve VIII (auditory) exits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen through which cranial nerve VIII (auditory) exits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Reference: Weitzman 1962. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001842.md b/md/UBERON/42/UBERON_2001842.md index a1b5e14de8..c4d6e7706b 100644 --- a/md/UBERON/42/UBERON_2001842.md +++ b/md/UBERON/42/UBERON_2001842.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001842 * *Label* = epihyal-ceratohyal joint - * *Definition* = Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [ceratohyal bone](../../UBERON/11/UBERON_0011611.md) and [core#connects](../../ts/core#connects.md) some [posterior ceratohyal](../../UBERON/27/UBERON_2000627.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2001942.md b/md/UBERON/42/UBERON_2001942.md index d8e2a3a0ca..9d5dbc3e94 100644 --- a/md/UBERON/42/UBERON_2001942.md +++ b/md/UBERON/42/UBERON_2001942.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001942 * *Label* = autopalatine-maxillary joint - * *Definition* = Joint that articulates the autopalatine cartilage or bone and maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the autopalatine cartilage or bone and maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [autopalatine](../../UBERON/20/UBERON_2000620.md) and [core#connects](../../ts/core#connects.md) some [maxilla](../../UBERON/97/UBERON_0002397.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2002042.md b/md/UBERON/42/UBERON_2002042.md index 3111c76d3f..8ee88bf7f1 100644 --- a/md/UBERON/42/UBERON_2002042.md +++ b/md/UBERON/42/UBERON_2002042.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002042 * *Label* = parapophysis 5 - * *Definition* = Parapophysis that is the lateral projection from the fifth centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Parapophysis that is the lateral projection from the fifth centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2002242.md b/md/UBERON/42/UBERON_2002242.md index 4c7d362ebb..cdf84916fc 100644 --- a/md/UBERON/42/UBERON_2002242.md +++ b/md/UBERON/42/UBERON_2002242.md @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_2005142.md b/md/UBERON/42/UBERON_2005142.md index 2c3d456962..20daaf9858 100644 --- a/md/UBERON/42/UBERON_2005142.md +++ b/md/UBERON/42/UBERON_2005142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005142 * *Label* = obsolete enameloid - * *Definition* = Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011692 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_2007042.md b/md/UBERON/42/UBERON_2007042.md index 6ac35cea35..8c5e303206 100644 --- a/md/UBERON/42/UBERON_2007042.md +++ b/md/UBERON/42/UBERON_2007042.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3000642.md b/md/UBERON/42/UBERON_3000642.md index 90ecf74d80..b0a29b8105 100644 --- a/md/UBERON/42/UBERON_3000642.md +++ b/md/UBERON/42/UBERON_3000642.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [maxillopalatine](../../UBERON/88/UBERON_3000288.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3000842.md b/md/UBERON/42/UBERON_3000842.md index fca94bcbd1..af5c99ebfc 100644 --- a/md/UBERON/42/UBERON_3000842.md +++ b/md/UBERON/42/UBERON_3000842.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000842 * *Label* = capitulum ulnae - * *Definition* = Small eminence on the distal articular head of the ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small eminence on the distal articular head of the ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3000942.md b/md/UBERON/42/UBERON_3000942.md index 20715a9c55..02aa9fc248 100644 --- a/md/UBERON/42/UBERON_3000942.md +++ b/md/UBERON/42/UBERON_3000942.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000942 * *Label* = firmisternal girdle - * *Definition* = Pectoral girdle that lacks epicoracoid horns. The sternum is fused to the pectoral arch, and the epicoracoid cartilages of each half of the girdle are fused to one another. The midzonal length of the girdle is shorter than that of an arciferal girdle, but pre- and postzonal elements tend to be longer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Pectoral girdle that lacks epicoracoid horns. The sternum is fused to the pectoral arch, and the epicoracoid cartilages of each half of the girdle are fused to one another. The midzonal length of the girdle is shorter than that of an arciferal girdle, but pre- and postzonal elements tend to be longer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3010042.md b/md/UBERON/42/UBERON_3010042.md index a4e02577bf..5de46edc9c 100644 --- a/md/UBERON/42/UBERON_3010042.md +++ b/md/UBERON/42/UBERON_3010042.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010042 * *Label* = protogynous hermaphroditic organism - * *Definition* = Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Sequential hermaphroditic organism that produces gametes first of the female sex, and then later of the male sex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3010142.md b/md/UBERON/42/UBERON_3010142.md index 3ead913c44..b332657a55 100644 --- a/md/UBERON/42/UBERON_3010142.md +++ b/md/UBERON/42/UBERON_3010142.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010142 * *Label* = occipital arch - * *Definition* = Posterior chondrocranium forming ventral and lateral margins of foramen magnum, medial to otic capsules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Posterior chondrocranium forming ventral and lateral margins of foramen magnum, medial to otic capsules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3010242.md b/md/UBERON/42/UBERON_3010242.md index f1666dc4f4..af88140a1e 100644 --- a/md/UBERON/42/UBERON_3010242.md +++ b/md/UBERON/42/UBERON_3010242.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_3010742.md b/md/UBERON/42/UBERON_3010742.md index ed40d81d01..4afa05ce19 100644 --- a/md/UBERON/42/UBERON_3010742.md +++ b/md/UBERON/42/UBERON_3010742.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/42/UBERON_4000142.md b/md/UBERON/42/UBERON_4000142.md index e147c8bfdc..8d2e6d87e8 100644 --- a/md/UBERON/42/UBERON_4000142.md +++ b/md/UBERON/42/UBERON_4000142.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000142 * *Label* = obsolete metaplastic ossification - * *Definition* = Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms - * metaplasia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000142] + * metaplasia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000142 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0036074 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/42/UBERON_4200042.md b/md/UBERON/42/UBERON_4200042.md index adb138bf5c..c48203fe10 100644 --- a/md/UBERON/42/UBERON_4200042.md +++ b/md/UBERON/42/UBERON_4200042.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0000043.md b/md/UBERON/43/UBERON_0000043.md index 2ccd479339..efcbbefaac 100644 --- a/md/UBERON/43/UBERON_0000043.md +++ b/md/UBERON/43/UBERON_0000043.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000043 * *Label* = tendon - * *Definition* = Dense regular connective tissue that connects muscle to bone[VSAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000073[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tendon[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Dense regular connective tissue that connects muscle to bone[VSAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000073, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tendon, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = AO notes: in FMA, tendon is an organ component that with parts dense-irregular-connective-tissue of tendon and dense-irregular-connective-tissue of tendon sheath; we follow VSAO in making it a subtype of the former. In VSAO tendons connect muscle to bone; in WP the def states integument (e.g. auricular muscles) - but JB confirms this is not actually tendon but aponeurosis ## Synonyms - * sinew [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tendon] - * tendo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tendon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinew [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tendon ] + * tendo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tendon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A02.880 * OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA * SCTID:256667004 - * UMLS:C0039508 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tendon] + * UMLS:C0039508 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tendon ] * VHOG:0001286 * VSAO:0000073 * Wikipedia:Tendon @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dense regular connective tissue that connects muscle to bone.[VSAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetically, tendinous tissue first appears in the invertebrate chordate Branchiostoma as myosepta. This two-dimensional array of collagen fibers is highly organized, with fibers running along two primary axes. In hagfish the first linear tendons appear and the myosepta have developed specialized regions with unidirectional fiber orientation - a linear tendon within the flat sheet of myoseptum.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0000443.md b/md/UBERON/43/UBERON_0000443.md index 6f4870ef68..30a9efa5ed 100644 --- a/md/UBERON/43/UBERON_0000443.md +++ b/md/UBERON/43/UBERON_0000443.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000443 * *Label* = left testicular vein - * *Definition* = A vein that drains the right pampiniform plexus and empties into the inferior vena cava. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A vein that drains the right pampiniform plexus and empties into the inferior vena cava. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * left spermatic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002219] - * vena testicularis dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002679] - * vena testicularis sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002680] + * left spermatic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002219 ] + * vena testicularis dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002679 ] + * vena testicularis sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002680 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [left testicle](../../UBERON/33/UBERON_0004533.md) and [testicular vein](../../UBERON/44/UBERON_0001144.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0000943.md b/md/UBERON/43/UBERON_0000943.md index c1774b7df6..3d6f6da319 100644 --- a/md/UBERON/43/UBERON_0000943.md +++ b/md/UBERON/43/UBERON_0000943.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00002721 * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005107 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000943 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_0001043.md b/md/UBERON/43/UBERON_0001043.md index 6f34b95626..b860ca38e9 100644 --- a/md/UBERON/43/UBERON_0001043.md +++ b/md/UBERON/43/UBERON_0001043.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001043 * *Label* = esophagus - * *Definition* = Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Esophagus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.rivm.nl/interspeciesinfo/inter/oesophagus/] + * *Definition* = Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Esophagus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.rivm.nl/interspeciesinfo/inter/oesophagus/ ] * *Comment* = AO notes: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995) ## Synonyms * gullet * oesophagus - * ?sophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Esophagus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ?sophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Esophagus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,7 +34,7 @@ * OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA * SCTID:181245004 * TAO:0000204 - * UMLS:C0014876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophagus] + * UMLS:C0014876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophagus ] * VHOG:0000450 * Wikipedia:Esophagus * XAO:0000127 @@ -72,8 +72,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The few structural specializations in (adult lampreys) pharynx include complex valves on the external gill openings that direct the tidal flow, and the division of the ancestral pharynx into an oesophagus and a respiratory pharynx.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = esophageal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001143.md b/md/UBERON/43/UBERON_0001143.md index 342e3d7efe..000fc8d85f 100644 --- a/md/UBERON/43/UBERON_0001143.md +++ b/md/UBERON/43/UBERON_0001143.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001143 * *Label* = hepatic vein - * *Definition* = Vein that carries blood away from the liver[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_vein[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000670[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376] + * *Definition* = Vein that carries blood away from the liver[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_vein, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000670, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3565355&group_id=76834&atid=1205376 ] * *Comment* = Definition derived from ZFA but general enough for other species. ## Synonyms - * liver vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena hepatica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hepatic veins [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * venae hepaticae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * liver vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena hepatica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hepatic veins [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * venae hepaticae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA * SCTID:278191001 * TAO:0000670 - * UMLS:C0019155 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Vein] + * UMLS:C0019155 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Vein ] * Wikipedia:Hepatic_vein * XAO:0000387 * ZFA:0000670 @@ -50,15 +50,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [channels_from](../../core#channels/om/core#channels_from.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001243.md b/md/UBERON/43/UBERON_0001243.md index 4a19c9c3aa..7401c382bf 100644 --- a/md/UBERON/43/UBERON_0001243.md +++ b/md/UBERON/43/UBERON_0001243.md @@ -3,50 +3,50 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001243 * *Label* = serosa of intestine - * *Definition* = A serous membrane that is part of a wall of intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a wall of intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check serosa/peritoneum ## Synonyms - * anatomical wall of bowel serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of bowel serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of intestine serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of intestine serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel anatomical wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel anatomical wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of bowel serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of bowel serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of intestine serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of intestine serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel anatomical wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel anatomical wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * intestinal serosa - * intestinal wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestinal wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine anatomical wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine anatomical wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intestinal wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestinal wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine anatomical wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine anatomical wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * intestine serosa - * intestine wall serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine wall serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of anatomical wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of anatomical wall of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of bowel anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of bowel wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of intestinal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of intestine anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of intestine wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of wall of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of anatomical wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of anatomical wall of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of bowel anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of bowel wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of intestinal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of intestine anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of intestine wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of wall of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intestine wall serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine wall serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of anatomical wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of anatomical wall of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of bowel anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of bowel wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of intestinal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of intestine anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of intestine wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of wall of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of anatomical wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of anatomical wall of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of bowel anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of bowel wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of intestinal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of intestine anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of intestine wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of wall of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * visceral peritoneum of intestine - * wall of bowel serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of bowel serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of intestine serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of intestine serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * wall of bowel serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of bowel serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of intestine serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of intestine serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -64,15 +64,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001343.md b/md/UBERON/43/UBERON_0001343.md index 06e2bee181..4cf8e90544 100644 --- a/md/UBERON/43/UBERON_0001343.md +++ b/md/UBERON/43/UBERON_0001343.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001343 * *Label* = seminiferous tubule of testis - * *Definition* = Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminiferous_tubule] + * *Definition* = Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminiferous_tubule ] ## Synonyms - * seminiferous cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18685] + * seminiferous cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18685 ] * seminiferous tubule * testis - seminiferous tubule * tubuli seminiferi - * tubuli seminiferi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminiferous_tubule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tubuli seminiferi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminiferous_tubule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * MAT:0000503 * MESH:A05.360.444.849.700 * SCTID:279614002 - * UMLS:C0036630 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminiferous_Tubule] - * UMLS:C1519236 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminiferous_Cord] + * UMLS:C0036630 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminiferous_Tubule ] + * UMLS:C1519236 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminiferous_Cord ] * VHOG:0001363 * Wikipedia:Seminiferous_tubule * XAO:0003088 @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two or three twisted curved tubules in each lobule of the testis in which spermatogenesis occurs. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Frogs among amphibians and the amniotes have males with testes that are composed of seminiferous tubules, which differ from ampullae in being long, highly convoluted ductules.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001443.md b/md/UBERON/43/UBERON_0001443.md index 96c8aef88c..82a1ecaaa3 100644 --- a/md/UBERON/43/UBERON_0001443.md +++ b/md/UBERON/43/UBERON_0001443.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001443 * *Label* = chest - * *Definition* = Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9576[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chest] + * *Definition* = Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9576, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chest ] * *Comment* = editor note - FMA:24216 present in FMA1, but gone in subsequent versions ## Synonyms - * anterior chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24816] + * anterior chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24816 ] * anterior thoracic region * anterolateral part of thorax - * front of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24816] + * front of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24816 ] * front of thorax - * pectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ventral part of thoracic region - * thoracic body wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000031] - * thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9576] - * thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chest[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * thoracic body wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000031 ] + * thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9576 ] + * thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chest, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,8 @@ * MESH:A01.911 * MIAA:0000295 * OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA - * UMLS:C0817096 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thorax] - * UMLS:C1527391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chest] + * UMLS:C0817096 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thorax ] + * UMLS:C1527391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chest ] * Wikipedia:Chest * galen:Chest * galen:Thorax @@ -60,8 +60,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001543.md b/md/UBERON/43/UBERON_0001543.md index e9dfba3da4..4418c03d7c 100644 --- a/md/UBERON/43/UBERON_0001543.md +++ b/md/UBERON/43/UBERON_0001543.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001543 * *Label* = popliteal lymph node - * *Definition* = The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_lymph_node] + * *Definition* = The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_lymph_node ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:44227 * MA:0000738 * SCTID:279156002 - * UMLS:C0588057 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Popliteal_Lymph_Node] + * UMLS:C0588057 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Popliteal_Lymph_Node ] * Wikipedia:Popliteal_lymph_node * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png * ncithesaurus:Popliteal_Lymph_Node @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001543 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001643.md b/md/UBERON/43/UBERON_0001643.md index ce2edb973e..bc6a7743ec 100644 --- a/md/UBERON/43/UBERON_0001643.md +++ b/md/UBERON/43/UBERON_0001643.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001643 * *Label* = oculomotor nerve - * *Definition* = Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oculomotor_nerve] + * *Definition* = Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oculomotor_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Oculomotor nerve [III] - * nervus oculomotorius [iii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50864[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oculomotor III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001284] + * nervus oculomotorius [iii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50864, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oculomotor III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001284 ] * oculomotor III nerve * oculomotor nerve tree * third cranial nerve - * 3n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1646[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 3n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1646, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-III * cranial nerve III - * inferior division of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:3n] - * nerve III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:488] - * nervus oculomotorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oculomotor_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior division of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:3n ] + * nerve III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:488 ] + * nervus oculomotorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oculomotor_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * occulomotor - * oculomotor nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:3n] + * oculomotor nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:3n ] ## Cross-references @@ -37,12 +37,12 @@ * MA:0001095 * MESH:A08.800.800.120.600 * NIF_GrossAnatomy:birnlex_1646 - * NeuroNames:488 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1646] + * NeuroNames:488 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1646 ] * OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA * SCTID:362456009 * TAO:0000405 - * UMLS:C0028864 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1646] - * UMLS:C0028864 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oculomotor_Nerve] + * UMLS:C0028864 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1646 ] + * UMLS:C0028864 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oculomotor_Nerve ] * VHOG:0000692 * Wikipedia:Oculomotor_nerve * XAO:0003090 @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Somatic efferent fibers which innervate four eye muscles.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001743.md b/md/UBERON/43/UBERON_0001743.md index df35bb87a1..8c73184137 100644 --- a/md/UBERON/43/UBERON_0001743.md +++ b/md/UBERON/43/UBERON_0001743.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001743 * *Label* = ligament of larynx - * *Definition* = A ligament that is part of a larynx and connexts the cartilages of the larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://education.yahoo.com/reference/gray/subjects/subject/236] + * *Definition* = A ligament that is part of a larynx and connexts the cartilages of the larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://education.yahoo.com/reference/gray/subjects/subject/236 ] ## Synonyms * laryngeal ligament - * larynx ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001755] + * larynx ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001755 ] ## Cross-references * FMA:55131 * MA:0001755 * SCTID:279508004 - * UMLS:C0458519 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Ligament] + * UMLS:C0458519 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Ligament ] * ncithesaurus:Laryngeal_Ligament ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ligament](../../UBERON/11/UBERON_0000211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001843.md b/md/UBERON/43/UBERON_0001843.md index bb2889be6f..7b54425e9b 100644 --- a/md/UBERON/43/UBERON_0001843.md +++ b/md/UBERON/43/UBERON_0001843.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001843 * *Label* = lateral semicircular canal - * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_semicircular_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_semicircular_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from lateral semicircular canal primordium (TAO:0000232)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0001943.md b/md/UBERON/43/UBERON_0001943.md index 1a89bacae7..af35744c2f 100644 --- a/md/UBERON/43/UBERON_0001943.md +++ b/md/UBERON/43/UBERON_0001943.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001943 * *Label* = midbrain tegmentum - * *Definition* = Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN10:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midbrain_tegmentum] + * *Definition* = Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN10:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midbrain_tegmentum ] * *Comment* = 'tegmentum' is used generically for the ventral part of the brainstem (ISBN10:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum ## Synonyms - * tegmentum mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midbrain_tegmentum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tegmentum mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midbrain_tegmentum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tegmentum of midbrain - * MTg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1200[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * mesencephalic tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001367] - * tegmentum mesencephalicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:491[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * MTg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1200, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * mesencephalic tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001367 ] + * tegmentum mesencephalicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:491, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,10 +26,10 @@ * MA:0000212 * MAT:0000452 * NIF_GrossAnatomy:birnlex_1200 - * NeuroNames:491 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1200] + * NeuroNames:491 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1200 ] * SCTID:362392007 * TAO:0000160 - * UMLS:C0039441 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1200] + * UMLS:C0039441 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1200 ] * VHOG:0001367 * Wikipedia:Midbrain_tegmentum * ZFA:0000160 @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Together, our results reveal a shared basic organization in the tegmental domains of the diencephalon and midbrain of developing lamprey, indicating early appearance of the domain in vertebrate phylogeny.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002043.md b/md/UBERON/43/UBERON_0002043.md index 7c5302027f..0e0523f513 100644 --- a/md/UBERON/43/UBERON_0002043.md +++ b/md/UBERON/43/UBERON_0002043.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002043 * *Label* = dorsal raphe nucleus - * *Definition* = A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_982[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_raphe_nucleus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855] + * *Definition* = A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_982, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_raphe_nucleus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855 ] * *Comment* = TODO check dorsal vs inferior. ZF has no pons. ## Synonyms - * cell group b7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68462] - * dorsal nucleus of the raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BrainInfo:512[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68462] - * dorsal nucleus raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68462] - * dorsal raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_982] - * inferior raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021724] - * nucleus raphes dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002434[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BrainInfo:512] - * nucleus raphes posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68462] - * DR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_982[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * DRN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_982[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsal raphC) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DR] - * nucleus dorsalis raphes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:512[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus raphe dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_raphe_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus raphe posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_raphe_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus raphes posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002434] - * posterior raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021724] + * cell group b7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68462 ] + * dorsal nucleus of the raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BrainInfo:512, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68462 ] + * dorsal nucleus raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68462 ] + * dorsal raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_982 ] + * inferior raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021724 ] + * nucleus raphes dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002434, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BrainInfo:512 ] + * nucleus raphes posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68462 ] + * DR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_982, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * DRN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_982, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsal raphC) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DR ] + * nucleus dorsalis raphes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:512, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus raphe dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_raphe_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus raphe posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_raphe_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus raphes posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002434 ] + * posterior raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021724 ] ## Cross-references @@ -35,9 +35,9 @@ * FMA:68462 * MA:0002980 * NIF_GrossAnatomy:birnlex_982 - * NeuroNames:512 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_982] + * NeuroNames:512 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_982 ] * TAO:0000366 - * UMLS:C0175392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_982] + * UMLS:C0175392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_982 ] * Wikipedia:Dorsal_raphe_nucleus * ZFA:0000366 * http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png @@ -63,8 +63,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002143.md b/md/UBERON/43/UBERON_0002143.md index 25a8ddd3e1..a74bae83f6 100644 --- a/md/UBERON/43/UBERON_0002143.md +++ b/md/UBERON/43/UBERON_0002143.md @@ -8,19 +8,19 @@ ## Synonyms * dorsal tegmental nucleus (gudden) - * dorsal tegmental nucleus of gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_992] + * dorsal tegmental nucleus of gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_992 ] * gudden nucleus - * nucleus tegmentalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000346] - * nucleus tegmentalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72434[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus tegmentalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000346 ] + * nucleus tegmentalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72434, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * posterior tegmental nucleus * von Gudden's nucleus - * DTg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_992[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ganglion dorsale tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus compactus suprafascicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsalis tegmenti (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsalis tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus opticus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tegmenti dorsale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:517[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * DTg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_992, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ganglion dorsale tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus compactus suprafascicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsalis tegmenti (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsalis tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus opticus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tegmenti dorsale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:517, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,9 +31,9 @@ * FMA:72434 * MA:0001013 * NIF_GrossAnatomy:birnlex_992 - * NeuroNames:517 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_992] + * NeuroNames:517 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_992 ] * TAO:0000346 - * UMLS:C0175393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_992] + * UMLS:C0175393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_992 ] * VHOG:0001368 * ZFA:0000346 @@ -55,8 +55,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002243.md b/md/UBERON/43/UBERON_0002243.md index 324b1b0abd..c66ccb193a 100644 --- a/md/UBERON/43/UBERON_0002243.md +++ b/md/UBERON/43/UBERON_0002243.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002243 * *Label* = cutaneous vein - * *Definition* = one of a number of veins in the subcutaneous tissue that empty into deep veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/cutaneous+vein] + * *Definition* = one of a number of veins in the subcutaneous tissue that empty into deep veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/cutaneous+vein ] * *Comment* = AO notes: GAT in FMA ## Synonyms @@ -13,7 +13,7 @@ * FMA:76720 * MA:0002098 - * UMLS:C1185726 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cutaneous_Vein] + * UMLS:C1185726 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cutaneous_Vein ] * ncithesaurus:Cutaneous_Vein ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002343.md b/md/UBERON/43/UBERON_0002343.md index 8eefb241cc..1484e06309 100644 --- a/md/UBERON/43/UBERON_0002343.md +++ b/md/UBERON/43/UBERON_0002343.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002343 * *Label* = abdomen musculature - * *Definition* = Set of all muscles in abdomen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Set of all muscles in abdomen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note distinction between abdomen muscle and abdomen musculature ## Synonyms * abdominal musculature - * muscle group of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71294] - * muscles of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71294] + * muscle group of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71294 ] + * muscles of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71294 ] * musculature of abdomen - * musculature of abdominal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86917] - * set of muscles of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71294] + * musculature of abdominal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86917 ] + * set of muscles of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71294 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002443.md b/md/UBERON/43/UBERON_0002443.md index 9a6df00266..80ad97017f 100644 --- a/md/UBERON/43/UBERON_0002443.md +++ b/md/UBERON/43/UBERON_0002443.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002443 * *Label* = choroidal blood vessel - * *Definition* = A blood vessel that is part of a choroid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a choroid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = cannot find singular in FMA, using Set class ## Synonyms - * blood vessel of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of choroid coat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of choroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of posterior uvea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of choroid coat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of choroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of posterior uvea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * choroid blood vessels * choroid blood vessels set - * choroid coat blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroidea blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior uvea blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa sanguinea choroideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76550[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of choroid blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76550] + * choroid coat blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroidea blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior uvea blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa sanguinea choroideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76550, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of choroid blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76550 ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [optic choroid](../../UBERON/76/UBERON_0001776.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002543.md b/md/UBERON/43/UBERON_0002543.md index 57dbdecb79..2cc0c7bb3b 100644 --- a/md/UBERON/43/UBERON_0002543.md +++ b/md/UBERON/43/UBERON_0002543.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002543 * *Label* = obsolete median fin skeleton - * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Mistakenly placed in uberon, should remain domain of TAO for now ## Synonyms - * axial fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001123] - * unpaired fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001123] + * axial fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001123 ] + * unpaired fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001123 ] ## Cross-references @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = MAT:0000277 * *[consider](../../er/oboInOwl#consider.md)* = MIAA:0000277 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0001123 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002543 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_0002643.md b/md/UBERON/43/UBERON_0002643.md index 2ae75830fc..20d1409f5d 100644 --- a/md/UBERON/43/UBERON_0002643.md +++ b/md/UBERON/43/UBERON_0002643.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002643 * *Label* = decussation of medial lemniscus - * *Definition* = The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_decussation] + * *Definition* = The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_decussation ] ## Synonyms - * decussation of lemnisci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * decussation of lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * decussation of medial lemnisci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * medial lemniscus decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * medullary sensory decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * sensory decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72622] - * decussatio lemnisci medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_decussation[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio lemniscorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:788[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio lemniscorum medialium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:788[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio sensoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:788[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation of the medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:788] + * decussation of lemnisci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * decussation of lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * decussation of medial lemnisci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * medial lemniscus decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * medullary sensory decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * sensory decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72622 ] + * decussatio lemnisci medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_decussation, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio lemniscorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:788, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio lemniscorum medialium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:788, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio sensoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:788, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation of the medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:788 ] ## Cross-references @@ -25,8 +25,8 @@ * BM:Me-LMX * FMA:72622 * NIF_GrossAnatomy:birnlex_1245 - * NeuroNames:788 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1245] - * UMLS:C0175544 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1245] + * NeuroNames:788 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1245 ] + * UMLS:C0175544 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1245 ] * Wikipedia:Sensory_decussation * http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002743.md b/md/UBERON/43/UBERON_0002743.md index b9be2a8bf2..6b76eb9b01 100644 --- a/md/UBERON/43/UBERON_0002743.md +++ b/md/UBERON/43/UBERON_0002743.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002743 * *Label* = basal forebrain - * *Definition* = The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_forebrain] + * *Definition* = The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_forebrain ] ## Synonyms - * basal forebrain area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1997] - * pars basalis telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_forebrain[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal forebrain area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1997 ] + * pars basalis telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_forebrain, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * BTO:0002444 * FMA:77700 * NIF_GrossAnatomy:birnlex_1560 - * NeuroNames:1997 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1560] + * NeuroNames:1997 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1560 ] * Wikipedia:Basal_forebrain * http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Basal_Forebrain_Monakhos_2007.png/200px-Basal_Forebrain_Monakhos_2007.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002843.md b/md/UBERON/43/UBERON_0002843.md index cfe3e296a5..274c00df78 100644 --- a/md/UBERON/43/UBERON_0002843.md +++ b/md/UBERON/43/UBERON_0002843.md @@ -6,15 +6,15 @@ ## Synonyms - * seventh cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6360] - * seventh cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6360] + * seventh cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6360 ] + * seventh cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6360 ] ## Cross-references * EMAPA:25160 * FMA:6360 * NIF_GrossAnatomy:birnlex_2609 - * UMLS:C0501737 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2609] + * UMLS:C0501737 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2609 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0002943.md b/md/UBERON/43/UBERON_0002943.md index 0627168269..a7254109d3 100644 --- a/md/UBERON/43/UBERON_0002943.md +++ b/md/UBERON/43/UBERON_0002943.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002943 * *Label* = lingual gyrus - * *Definition* = The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_gyrus] + * *Definition* = The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_gyrus ] ## Synonyms - * gyrus occipitotemporalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61904[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lingula of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61904] - * medial occipitotemporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61904] - * medial occipitotemporal gyrus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61904] - * gyrus lingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial occipito-temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MOTG] + * gyrus occipitotemporalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61904, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lingula of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61904 ] + * medial occipitotemporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61904 ] + * medial occipitotemporal gyrus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61904 ] + * gyrus lingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial occipito-temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MOTG ] ## Cross-references @@ -21,9 +21,9 @@ * BAMS:MOTG * FMA:61904 * NIF_GrossAnatomy:birnlex_740 - * NeuroNames:158 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_740] + * NeuroNames:158 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_740 ] * SCTID:279203007 - * UMLS:C0152308 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_740] + * UMLS:C0152308 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_740 ] * Wikipedia:Lingual_gyrus * http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray727_lingual_gyrus.png/200px-Gray727_lingual_gyrus.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003043.md b/md/UBERON/43/UBERON_0003043.md index 8f074c660b..cb197e4bf8 100644 --- a/md/UBERON/43/UBERON_0003043.md +++ b/md/UBERON/43/UBERON_0003043.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003043 * *Label* = posterior part of anterior commissure - * *Definition* = the major forebrain commissure that connects the two temporal lobes of the cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010860] + * *Definition* = the major forebrain commissure that connects the two temporal lobes of the cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010860 ] ## Synonyms - * anterior commissure pars posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010860] - * anterior commissure temporal limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008230] - * anterior commissure, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61964] - * temporal limb of anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61964] - * pars posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008229] - * acoustic tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:act] - * anterior commissure, temporal limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:act] + * anterior commissure pars posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010860 ] + * anterior commissure temporal limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008230 ] + * anterior commissure, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61964 ] + * temporal limb of anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61964 ] + * pars posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008229 ] + * acoustic tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:act ] + * anterior commissure, temporal limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:act ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:61964 * NIF_GrossAnatomy:birnlex_977 * NeuroNames:207 - * UMLS:C0175210 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_977] + * UMLS:C0175210 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_977 ] ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [temporal lobe](../../UBERON/71/UBERON_0001871.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior commissure](../../UBERON/35/UBERON_0000935.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003143.md b/md/UBERON/43/UBERON_0003143.md index e1f563332c..ccc0f89784 100644 --- a/md/UBERON/43/UBERON_0003143.md +++ b/md/UBERON/43/UBERON_0003143.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003143 * *Label* = pupa - * *Definition* = Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] + * *Definition* = Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] ## Synonyms - * aurelia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] - * chrysalides [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * chrysalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] - * pupae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * aurelia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] + * chrysalides [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * chrysalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] + * pupae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [pupal stage](../../UBERON/70/UBERON_0000070.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pupal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003243.md b/md/UBERON/43/UBERON_0003243.md index a368f9ffd3..c9d23849f0 100644 --- a/md/UBERON/43/UBERON_0003243.md +++ b/md/UBERON/43/UBERON_0003243.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003243 * *Label* = epithelium of cochlear duct - * *Definition* = An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a cochlear duct of membranous labyrinth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Reissner's canal epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Reissner's canal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cochlear duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cochlear duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cochlear duct of membranous labyrinth epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cochlear duct of membranous labyrinth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of Reissner's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of cochlear duct of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of Reissner's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of cochlear duct of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Reissner's canal epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Reissner's canal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cochlear duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cochlear duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cochlear duct of membranous labyrinth epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cochlear duct of membranous labyrinth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of Reissner's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of cochlear duct of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of Reissner's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of cochlear duct of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear duct of membranous labyrinth](../../UBERON/55/UBERON_0001855.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003343.md b/md/UBERON/43/UBERON_0003343.md index bcf76c8b25..3c4e530c3d 100644 --- a/md/UBERON/43/UBERON_0003343.md +++ b/md/UBERON/43/UBERON_0003343.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003343 * *Label* = mucosa of oral region - * *Definition* = A mucosa that is part of a oral opening [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a oral opening [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of oral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of oral part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oral part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of subdivision of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of subdivision of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oral part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of subdivision of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral opening mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral opening mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral opening mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral opening organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of face mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of face mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of face mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of face organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral region mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral region mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral region mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral region organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oral part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of subdivision of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * subdivision of mouth mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * subdivision of mouth mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * subdivision of mouth mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * subdivision of mouth organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of oral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of oral part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oral part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of subdivision of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of subdivision of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oral part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of subdivision of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral opening mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral opening mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral opening mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral opening organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of face mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of face mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of face mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of face organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral region mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral region mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral region mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral region organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oral part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of subdivision of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * subdivision of mouth mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * subdivision of mouth mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * subdivision of mouth mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * subdivision of mouth organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -54,15 +54,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral opening](../../UBERON/66/UBERON_0000166.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003443.md b/md/UBERON/43/UBERON_0003443.md index bf5a26fcc0..c1cf7db8da 100644 --- a/md/UBERON/43/UBERON_0003443.md +++ b/md/UBERON/43/UBERON_0003443.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003443 * *Label* = thoracic cavity nerve - * *Definition* = A nerve that is located in a thoracic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is located in a thoracic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor note: consider merging with thoracic nerve. In MA the only subclass is the phrenic nerve, which arises from a cervical nerve ## Synonyms - * cavity of chest nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cavity of chest nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) and [nerve](../../UBERON/21/UBERON_0001021.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003543.md b/md/UBERON/43/UBERON_0003543.md index 5a2b39aa62..0282bc9e54 100644 --- a/md/UBERON/43/UBERON_0003543.md +++ b/md/UBERON/43/UBERON_0003543.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003543 * *Label* = left lung respiratory bronchiole - * *Definition* = A respiratory bronchiole that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A respiratory bronchiole that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiolus respiratorius of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus respiratorius of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001779 - * UMLS:C1708674 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung_Respiratory_Bronchiole] + * UMLS:C1708674 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung_Respiratory_Bronchiole ] * ncithesaurus:Left_Lung_Respiratory_Bronchiole ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [respiratory bronchiole](../../UBERON/88/UBERON_0002188.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003543 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003643.md b/md/UBERON/43/UBERON_0003643.md index ac455521e3..770ff7571e 100644 --- a/md/UBERON/43/UBERON_0003643.md +++ b/md/UBERON/43/UBERON_0003643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003643 * *Label* = respiratory system arterial blood vessel - * *Definition* = An arterial blood vessel that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arterial blood vessel that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arterial blood vessel](../../UBERON/09/UBERON_0003509.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003843.md b/md/UBERON/43/UBERON_0003843.md index 675a70fab5..49e6aafb66 100644 --- a/md/UBERON/43/UBERON_0003843.md +++ b/md/UBERON/43/UBERON_0003843.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003843 * *Label* = dental epithelium - * *Definition* = Epithelium that is part of a developing tooth or dental organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005134[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726] + * *Definition* = Epithelium that is part of a developing tooth or dental organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005134, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726 ] * *Comment* = Editor notes: see comments for dentail organ. Development notes: In the developing molar dentition of the mouse, tooth inductive po- tential resides in the dental epithelium until embryonic day (E)12.5 (3). Thereafter, tooth inductive potential shifts to neural crest-derived dental mesenchyme, which acquires the ability to direct tooth formation in nonodontogenic tissues (3, 4)[PMID:10954731]. Editor notes: todo - full developmental relationships ## Synonyms - * dental epithelia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * dental epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005134] + * dental epithelia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * dental epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005134 ] * odontogenic epithelium * tooth epithelium - * reduced enamel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001723] + * reduced enamel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001723 ] ## Cross-references @@ -20,7 +20,7 @@ * BTO:0001723 * EMAPA:32903 * TAO:0005134 - * UMLS:C1709309 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Odontogenic_Epithelial_Remnants] + * UMLS:C1709309 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Odontogenic_Epithelial_Remnants ] * VHOG:0001443 * XAO:0003203 * ZFA:0005134 @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tooth enamel organ](../../UBERON/76/UBERON_0005176.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0003943.md b/md/UBERON/43/UBERON_0003943.md index c8d7a4d897..592fd49205 100644 --- a/md/UBERON/43/UBERON_0003943.md +++ b/md/UBERON/43/UBERON_0003943.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003943 * *Label* = fourth lumbar dorsal root ganglion - * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001019] + * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001019 ] ## Synonyms - * L4 dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001019] - * forth lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2626] - * fourth lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * fourth lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6338] + * L4 dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001019 ] + * forth lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2626 ] + * fourth lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * fourth lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6338 ] * L4 ganglion ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:25167 * FMA:6338 * NIF_GrossAnatomy:birnlex_2626 - * UMLS:C0501716 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2626] + * UMLS:C0501716 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2626 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004043.md b/md/UBERON/43/UBERON_0004043.md index 47ec233070..6ae2555321 100644 --- a/md/UBERON/43/UBERON_0004043.md +++ b/md/UBERON/43/UBERON_0004043.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004043 * *Label* = semicircular canal ampulla - * *Definition* = the spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008488[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osseous_ampullae] + * *Definition* = the spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008488, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osseous_ampullae ] * *Comment* = TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal' ## Synonyms - * ampullae osseae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osseous_ampullae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * membraneous ampulla of the semicircular duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008488] - * semicircular duct ampulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002770] + * ampullae osseae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osseous_ampullae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * membraneous ampulla of the semicircular duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008488 ] + * semicircular duct ampulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002770 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004243.md b/md/UBERON/43/UBERON_0004243.md index 550571557b..665da0aea8 100644 --- a/md/UBERON/43/UBERON_0004243.md +++ b/md/UBERON/43/UBERON_0004243.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004243 * *Label* = prostate gland smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a prostate gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscular tissue of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74245] - * non-striated muscle of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate gland involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate gland non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate gland smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * substantia muscularis prostatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74245[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * involuntary muscle of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscular tissue of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74245 ] + * non-striated muscle of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate gland involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate gland non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate gland smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * substantia muscularis prostatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74245, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004443.md b/md/UBERON/43/UBERON_0004443.md index 2884e72b95..c1cadb569f 100644 --- a/md/UBERON/43/UBERON_0004443.md +++ b/md/UBERON/43/UBERON_0004443.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004443 * *Label* = proximal epiphysis of proximal phalanx of manual digit 5 - * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of proximal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37535] - * base of proximal phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37535] - * base of proximal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37535] - * base of proximal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37535] - * proximal epiphysis of proximal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37535[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of proximal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37535 ] + * base of proximal phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37535 ] + * base of proximal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37535 ] + * base of proximal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37535 ] + * proximal epiphysis of proximal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37535, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manual digit 5](../../UBERON/31/UBERON_0004331.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004643.md b/md/UBERON/43/UBERON_0004643.md index 82d2f70f45..d580ab172c 100644 --- a/md/UBERON/43/UBERON_0004643.md +++ b/md/UBERON/43/UBERON_0004643.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004643 * *Label* = lateral ventricle ependyma - * *Definition* = An ependyma that is part of a lateral ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ependyma that is part of a lateral ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ependyma of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242825] + * ependyma of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242825 ] ## Cross-references * FMA:242825 * MA:0000964 * SCTID:369275002 - * UMLS:C0228162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Ventricle_Ependyma] + * UMLS:C0228162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Ventricle_Ependyma ] * ncithesaurus:Lateral_Ventricle_Ependyma ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ependyma](../../UBERON/70/UBERON_0004670.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004743.md b/md/UBERON/43/UBERON_0004743.md index a1c4aa3231..b681490d31 100644 --- a/md/UBERON/43/UBERON_0004743.md +++ b/md/UBERON/43/UBERON_0004743.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004743 * *Label* = coracoid bone - * *Definition* = Endochondral bone that is paired and forms part of the socket for the humerus in tetrapods and acts as base of the pectoral fin in fish. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coracoid] + * *Definition* = Endochondral bone that is paired and forms part of the socket for the humerus in tetrapods and acts as base of the pectoral fin in fish. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coracoid ] * *Comment* = Editor notes: check developmental relationships. Taxon notes: In Theria, coracoid bones non-existent or fused with the shoulder blades to form coracoid processes[WP]. Procoracoid+coracoid are homologuous with coracoid of teleostomi. The coracoid is a triangular shaped-bone that usually has an anteriorly directed long process that may joins its counterpart in some fish groups. It may be perforated by the coracoid foramen or it may be notched dorsally and forms the scapulo-coracoid foramen together with a similar notch of the ventral margin of the scapula[VSAO] Terminology notes: see discussion in Kardong - suggests using procoracoid (anterior coracoid) for the element in birds, reptiles, amphibians and fish, and reserving coracoid for the new synapsid/therian structure. ## Synonyms - * coracocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000332] - * coracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000332] - * coracoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000332] - * hypocoracocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000332] - * clavicula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] - * clavicula posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] - * clavicula vera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] - * coracoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] - * coracoidien [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] - * metacoracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000158] - * pars sternalis scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000764] + * coracocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000332 ] + * coracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000332 ] + * coracoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000332 ] + * hypocoracocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000332 ] + * clavicula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] + * clavicula posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] + * clavicula vera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] + * coracoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] + * coracoidien [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] + * metacoracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000158 ] + * pars sternalis scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000764 ] ## Cross-references @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired cartilaginous structures or endochondral bones located on the posterolateral portions of the zonal area of the pectoral girdle.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of zonal element (AAO:0000936)[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The coracoid is a triangular shaped-bone that usually has an anteriorly directed long process that may joins its counterpart in some fish groups. It may be perforated by the coracoid foramen or it may be notched dorsally and forms the scapulo-coracoid foramen together with a similar notch of the ventral margin of the scapula.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0004943.md b/md/UBERON/43/UBERON_0004943.md index 65cb128652..d88733304a 100644 --- a/md/UBERON/43/UBERON_0004943.md +++ b/md/UBERON/43/UBERON_0004943.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004943 * *Label* = submucosa of urinary bladder - * *Definition* = The submucous layer of the wall of the urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002117] + * *Definition* = The submucous layer of the wall of the urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002117 ] ## Synonyms - * bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tela submucosa vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15929[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tela submucosa vesicae urinariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002117] - * urinary bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucous layer of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002117] + * bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tela submucosa vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15929, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tela submucosa vesicae urinariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002117 ] + * urinary bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucous layer of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002117 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005043.md b/md/UBERON/43/UBERON_0005043.md index 4e48313060..10473d307b 100644 --- a/md/UBERON/43/UBERON_0005043.md +++ b/md/UBERON/43/UBERON_0005043.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005043 * *Label* = mucosa of nasolacrimal duct - * *Definition* = A mucosa that is part of a nasolacrimal duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a nasolacrimal duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of nasolacrimal duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of nasolacrimal duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasolacrimal duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasolacrimal duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasolacrimal duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasolacrimal duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasolacrimal ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59664] - * organ mucosa of nasolacrimal duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of nasolacrimal duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of nasolacrimal duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasolacrimal duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasolacrimal duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasolacrimal duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasolacrimal duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasolacrimal ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59664 ] + * organ mucosa of nasolacrimal duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasolacrimal duct](../../UBERON/92/UBERON_0002392.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005243.md b/md/UBERON/43/UBERON_0005243.md index b336c42a5b..70e8799bc0 100644 --- a/md/UBERON/43/UBERON_0005243.md +++ b/md/UBERON/43/UBERON_0005243.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005243 * *Label* = interventricular septum endocardium - * *Definition* = An endocardium that is part of a interventricular septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endocardium that is part of a interventricular septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - split? ## Synonyms - * endocardium of interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83584] - * interventricular septum endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000615] + * endocardium of interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83584 ] + * interventricular septum endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000615 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interventricular septum](../../UBERON/94/UBERON_0002094.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005343.md b/md/UBERON/43/UBERON_0005343.md index 002096303b..4531b605fd 100644 --- a/md/UBERON/43/UBERON_0005343.md +++ b/md/UBERON/43/UBERON_0005343.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005343 * *Label* = cortical plate - * *Definition* = the outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008439] + * *Definition* = the outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008439 ] * *Comment* = Development notes: in humans develops into cortical layers II-VI ## Synonyms * cerebral cortex cortical plate - * CP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * CxP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * CP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * CxP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005443.md b/md/UBERON/43/UBERON_0005443.md index ec8d36aedf..7553c355bf 100644 --- a/md/UBERON/43/UBERON_0005443.md +++ b/md/UBERON/43/UBERON_0005443.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005443 * *Label* = filum terminale - * *Definition* = The filum terminale ('terminal thread'), is a delicate strand of fibrous tissue, about 20 cm. in length, proceeding downward from the apex of the conus medullaris. It gives longitudinal support to the spinal cord and consists of two parts: The upper part, or filum terminale internum, is about 15 cm. long and reaches as far as the lower border of the second sacral vertebra. It is continuous above with the pia mater and contained within a tubular sheath of the dura mater. In addition, it is surrounded by the nerves forming the cauda equina, from which it can be easily recognized by its bluish-white color. The lower part, or filum terminale externum, closely adheres to the dura mater. It extends downward from the apex of the tubular sheath and is attached to the back of the first segment of the coccyx in a structure sometimes referred to as the coccygeal ligament. The most inferior of the spinal nerves, the coccygeal nerve leaves the spinal cord at the level of the conus medullaris, superior to the filum terminale. However, adhering to the outer surface of the filum terminale are a few strands of nerve fibers which probably represent rudimentary second and third coccygeal nerves. Furthermore, the central canal of the spinal cord extends 5 to 6 cm. beyond the conus medullaris, downward into the filum terminale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Filum_terminale] + * *Definition* = The filum terminale ('terminal thread'), is a delicate strand of fibrous tissue, about 20 cm. in length, proceeding downward from the apex of the conus medullaris. It gives longitudinal support to the spinal cord and consists of two parts: The upper part, or filum terminale internum, is about 15 cm. long and reaches as far as the lower border of the second sacral vertebra. It is continuous above with the pia mater and contained within a tubular sheath of the dura mater. In addition, it is surrounded by the nerves forming the cauda equina, from which it can be easily recognized by its bluish-white color. The lower part, or filum terminale externum, closely adheres to the dura mater. It extends downward from the apex of the tubular sheath and is attached to the back of the first segment of the coccyx in a structure sometimes referred to as the coccygeal ligament. The most inferior of the spinal nerves, the coccygeal nerve leaves the spinal cord at the level of the conus medullaris, superior to the filum terminale. However, adhering to the outer surface of the filum terminale are a few strands of nerve fibers which probably represent rudimentary second and third coccygeal nerves. Furthermore, the central canal of the spinal cord extends 5 to 6 cm. beyond the conus medullaris, downward into the filum terminale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Filum_terminale ] ## Synonyms - * filum terminale segment of pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83977] - * pars pialis fili terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83977[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * terminal filum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83977] + * filum terminale segment of pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83977 ] + * pars pialis fili terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83977, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * terminal filum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83977 ] * coccygeal ligament ## Cross-references @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The slender, thread-like continuation of the spinal cord below the origin of the lumbar nerves. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005643.md b/md/UBERON/43/UBERON_0005643.md index 8e64ff572c..2e3c461733 100644 --- a/md/UBERON/43/UBERON_0005643.md +++ b/md/UBERON/43/UBERON_0005643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005643 * *Label* = foregut duodenum epithelium - * *Definition* = An epithelium that is part of a duodenum of foregut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a duodenum of foregut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut region of duodenum](../../UBERON/86/UBERON_0003286.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005743.md b/md/UBERON/43/UBERON_0005743.md index d531baf5c3..fbb1c94fa7 100644 --- a/md/UBERON/43/UBERON_0005743.md +++ b/md/UBERON/43/UBERON_0005743.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005743 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_0005843.md b/md/UBERON/43/UBERON_0005843.md index 1a2cee38be..fab85309d2 100644 --- a/md/UBERON/43/UBERON_0005843.md +++ b/md/UBERON/43/UBERON_0005843.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005843 * *Label* = sacral spinal cord - * *Definition* = A spinal cord segment that adjacent_to a sacral region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord segment that adjacent_to a sacral region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sacral segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256623] - * sacral segments of spinal cord [1-5] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256623] - * segmenta sacralia medullae spinalis [1-5] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256623[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sacral segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256623 ] + * sacral segments of spinal cord [1-5] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256623 ] + * segmenta sacralia medullae spinalis [1-5] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256623, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:256623 * NIF_GrossAnatomy:birnlex_1275 * SCTID:244438003 - * UMLS:C0581669 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1275] - * UMLS:C0581669 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacral_Spinal_Cord] - * UMLS:C1280196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1275] + * UMLS:C0581669 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1275 ] + * UMLS:C0581669 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacral_Spinal_Cord ] + * UMLS:C1280196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1275 ] * ncithesaurus:Sacral_Spinal_Cord ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [sacral region](../../UBERON/73/UBERON_0005473.md) and [spinal cord segment](../../UBERON/44/UBERON_0005844.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0005943.md b/md/UBERON/43/UBERON_0005943.md index 55f4b71e81..e39cca8870 100644 --- a/md/UBERON/43/UBERON_0005943.md +++ b/md/UBERON/43/UBERON_0005943.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006143.md b/md/UBERON/43/UBERON_0006143.md index 3542a2185c..cb8580deca 100644 --- a/md/UBERON/43/UBERON_0006143.md +++ b/md/UBERON/43/UBERON_0006143.md @@ -6,7 +6,7 @@ ## Synonyms - * proper plantar vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002138] + * proper plantar vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002138 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006243.md b/md/UBERON/43/UBERON_0006243.md index 1c4a7291a7..c98e4c029c 100644 --- a/md/UBERON/43/UBERON_0006243.md +++ b/md/UBERON/43/UBERON_0006243.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006343.md b/md/UBERON/43/UBERON_0006343.md index 1908a75f24..edd84eab73 100644 --- a/md/UBERON/43/UBERON_0006343.md +++ b/md/UBERON/43/UBERON_0006343.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006343 * *Label* = right subhepatic recess - * *Definition* = The hepatorenal recess or subhepatic recess is the space that separates the liver from the right kidney. As a potential space, the recess is not filled with fluid under normal conditions. However, fluid can collect in this space in circumstances where the abdomen fills with fluid, such as hemoperitoneum. This fluid may be seen on ultrasound or computed tomography (CT scan). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] + * *Definition* = The hepatorenal recess or subhepatic recess is the space that separates the liver from the right kidney. As a potential space, the recess is not filled with fluid under normal conditions. However, fluid can collect in this space in circumstances where the abdomen fills with fluid, such as hemoperitoneum. This fluid may be seen on ultrasound or computed tomography (CT scan). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] ## Synonyms - * Morison's pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * hepatorenal fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * hepatorenal recess of subhepatic space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * recessus hepatorenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * recessus hepatorenalis recessi subhepatici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * right hepatic recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000450] - * right posterior subphrenic space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * right subhepatic space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14715] - * Morison pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] - * Morison's pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] - * hepatorenal recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] - * pouch of Morison [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] - * pouch of Morrison [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatorenal_recess_of_subhepatic_space] + * Morison's pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * hepatorenal fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * hepatorenal recess of subhepatic space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * recessus hepatorenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * recessus hepatorenalis recessi subhepatici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * right hepatic recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000450 ] + * right posterior subphrenic space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * right subhepatic space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14715 ] + * Morison pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] + * Morison's pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] + * hepatorenal recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] + * pouch of Morison [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] + * pouch of Morrison [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatorenal_recess_of_subhepatic_space ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006443.md b/md/UBERON/43/UBERON_0006443.md index c07129073c..2b49ca8f96 100644 --- a/md/UBERON/43/UBERON_0006443.md +++ b/md/UBERON/43/UBERON_0006443.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006643.md b/md/UBERON/43/UBERON_0006643.md index a5e7086476..c63d0a21f5 100644 --- a/md/UBERON/43/UBERON_0006643.md +++ b/md/UBERON/43/UBERON_0006643.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006643 * *Label* = tunica albuginea of testis - * *Definition* = The Tunica Albuginea is the fibrous covering of the testis. It is a dense blue-white membrane, composed of bundles of white fibrous tissue which interlace in every direction. It is covered by the tunica vaginalis, except at the points of attachment of the epididymis to the testis, and along its posterior border, where the spermatic vessels enter the gland. It is applied to the tunica vasculosa over the glandular substance of the testis, and, at its posterior border, is reflected into the interior of the gland, forming an incomplete vertical septum, called the mediastinum testis (corpus Highmori). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_of_testis] + * *Definition* = The Tunica Albuginea is the fibrous covering of the testis. It is a dense blue-white membrane, composed of bundles of white fibrous tissue which interlace in every direction. It is covered by the tunica vaginalis, except at the points of attachment of the epididymis to the testis, and along its posterior border, where the spermatic vessels enter the gland. It is applied to the tunica vasculosa over the glandular substance of the testis, and, at its posterior border, is reflected into the interior of the gland, forming an incomplete vertical septum, called the mediastinum testis (corpus Highmori). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_of_testis ] ## Synonyms - * tunica albuginea (testis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19843] - * tunica albuginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002096[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000801[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Tunica_Albuginea] - * tunica albuginea %28testicles%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_of_testis] - * tunica albuginea testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_of_testis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica albuginea (testis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19843 ] + * tunica albuginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002096, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000801, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Tunica_Albuginea ] + * tunica albuginea %28testicles%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_of_testis ] + * tunica albuginea testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_of_testis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:19289 * FMA:19843 * SCTID:279604006 - * UMLS:C0227999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tunica_Albuginea] + * UMLS:C0227999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tunica_Albuginea ] * VHOG:0000801 * Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_of_testis * ncithesaurus:Tunica_Albuginea @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) and [tunica albuginea](../../UBERON/10/UBERON_0006610.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The layer of connective tissue covering the testicles. [Wikipedia_(15/09/09)][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tunica albuginea testis is the major component of the capsule of mammalian testes. (...) Our results from studying the mole provide evidence that the spatio-temporal pattern of testis development is not perfectly conserved in mammals, since we found differences with respect to the mouse testis organogenesis. This fact is even more significant when we consider that, apart from the mouse, the mole is probably the one of the best-known mammalian species in terms of the genetic control of testis development, implying that more peculiarities would be found if more species were investigated.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006743.md b/md/UBERON/43/UBERON_0006743.md index 9c54156013..ceb68db90c 100644 --- a/md/UBERON/43/UBERON_0006743.md +++ b/md/UBERON/43/UBERON_0006743.md @@ -6,20 +6,20 @@ ## Synonyms - * PDT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1490] - * paleodentate of dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1490] - * paleodentate part of dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72540] - * paleodentate portion of dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72540] - * paleodentate part of the dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:685] - * pars paleodentata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:685[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * PDT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1490 ] + * paleodentate of dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1490 ] + * paleodentate part of dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72540 ] + * paleodentate portion of dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72540 ] + * paleodentate part of the dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:685 ] + * pars paleodentata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:685, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PDt * FMA:72540 * NIF_GrossAnatomy:birnlex_1490 - * NeuroNames:685 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1490] - * UMLS:C0175486 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1490] + * NeuroNames:685 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1490 ] + * UMLS:C0175486 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1490 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0006843.md b/md/UBERON/43/UBERON_0006843.md index b035866330..99d2b7cb04 100644 --- a/md/UBERON/43/UBERON_0006843.md +++ b/md/UBERON/43/UBERON_0006843.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006843 * *Label* = root of cranial nerve - * *Definition* = A nerve root that continuous_with a cranial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve root that continuous_with a cranial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor note: recommend asserting under this class rather than relying on inference, as relations may change ## Synonyms - * cranial nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52609] - * cranial neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52609] + * cranial nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52609 ] + * cranial neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52609 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [cranial nerve](../../UBERON/85/UBERON_0001785.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0007143.md b/md/UBERON/43/UBERON_0007143.md index d10412653d..e1376bba2a 100644 --- a/md/UBERON/43/UBERON_0007143.md +++ b/md/UBERON/43/UBERON_0007143.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007143 * *Label* = right internal carotid artery - * *Definition* = An internal carotid artery that branching_part_of a right common carotid artery plus branches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An internal carotid artery that branching_part_of a right common carotid artery plus branches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arteria carotis interna dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3949] + * arteria carotis interna dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3949 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [branching_part_of](../../RO/80/RO_0002380.md) some [right common carotid artery plus branches](../../UBERON/31/UBERON_0001531.md) and [internal carotid artery](../../UBERON/32/UBERON_0001532.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0007243.md b/md/UBERON/43/UBERON_0007243.md index e1c8998c9a..db8da49583 100644 --- a/md/UBERON/43/UBERON_0007243.md +++ b/md/UBERON/43/UBERON_0007243.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007243 * *Label* = tunica media of vein - * *Definition* = A tunica media that is part of a vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica media that is part of a vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tunica media (venae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14354] - * venous media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100033] + * tunica media (venae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14354 ] + * venous media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100033 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) and [tunica media](../../UBERON/22/UBERON_0002522.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0007643.md b/md/UBERON/43/UBERON_0007643.md index 865450df1d..5339e03815 100644 --- a/md/UBERON/43/UBERON_0007643.md +++ b/md/UBERON/43/UBERON_0007643.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007643 * *Label* = node of ligamentum arteriosum - * *Definition* = an inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] + * *Definition* = an inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum ] ## Synonyms - * Botallo's node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74033] - * ligamentum arteriosum node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74033] - * lymph node of ligamentum arteriosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * nodus ligamenti arteriosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum] + * Botallo's node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74033 ] + * ligamentum arteriosum node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74033 ] + * lymph node of ligamentum arteriosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * nodus ligamenti arteriosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0007843.md b/md/UBERON/43/UBERON_0007843.md index 505f9d00b4..5c8e8680ff 100644 --- a/md/UBERON/43/UBERON_0007843.md +++ b/md/UBERON/43/UBERON_0007843.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007843 * *Label* = uncinate process of ribs - * *Definition* = A posterior projection from proximal rib segments. Offers attachment sites for respiratory and shoulder muscles as well as adding structural support to the trunk skeleton[Kardong 2012]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = A posterior projection from proximal rib segments. Offers attachment sites for respiratory and shoulder muscles as well as adding structural support to the trunk skeleton[Kardong 2012]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx ## Synonyms - * uncinate process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000741[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * uncinate process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000741, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0008243.md b/md/UBERON/43/UBERON_0008243.md index 43a4ba8c44..679f17750a 100644 --- a/md/UBERON/43/UBERON_0008243.md +++ b/md/UBERON/43/UBERON_0008243.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008243 * *Label* = upper back muscle - * *Definition* = A muscle of back that is part of a dorsal thoracic segment of trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle of back that is part of a dorsal thoracic segment of trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle of back](../../UBERON/24/UBERON_0002324.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal thoracic segment of trunk](../../UBERON/31/UBERON_0008231.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0008343.md b/md/UBERON/43/UBERON_0008343.md index a7c3e1a01f..66bb242f04 100644 --- a/md/UBERON/43/UBERON_0008343.md +++ b/md/UBERON/43/UBERON_0008343.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008343 * *Label* = intestinal villus of jejunum - * *Definition* = An intestinal villus in the jejunum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An intestinal villus in the jejunum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intestinal villus](../../UBERON/13/UBERON_0001213.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0008443.md b/md/UBERON/43/UBERON_0008443.md index a099f23113..55021b4ac8 100644 --- a/md/UBERON/43/UBERON_0008443.md +++ b/md/UBERON/43/UBERON_0008443.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008443 * *Label* = webbed digit - * *Definition* = A digit that is part of a webbed autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digit that is part of a webbed autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit](../../UBERON/44/UBERON_0002544.md) and [part_of](../../BFO/50/BFO_0000050.md) some [webbed autopod](../../UBERON/40/UBERON_0008440.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0008843.md b/md/UBERON/43/UBERON_0008843.md index 9366b0fb79..b5b67a446a 100644 --- a/md/UBERON/43/UBERON_0008843.md +++ b/md/UBERON/43/UBERON_0008843.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008843 * *Label* = gubernaculum testis - * *Definition* = The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002813] + * *Definition* = The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002813 ] * *Comment* = The upper part of the gubernaculum degenerates; The lower part persists as the gubernaculum testis ("scrotal ligament"). This ligament secures the testis to the most inferior portion of the scrotum, tethering it in place and limiting the degree to which the testis can move within the scrotum[WP] ## Synonyms - * Hunter's gubernaculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002813] - * scrotal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gubernaculum] + * Hunter's gubernaculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002813 ] + * scrotal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gubernaculum ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gubernaculum](../../UBERON/46/UBERON_0004346.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0008943.md b/md/UBERON/43/UBERON_0008943.md index 00399b6072..d8380abd52 100644 --- a/md/UBERON/43/UBERON_0008943.md +++ b/md/UBERON/43/UBERON_0008943.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008943 * *Label* = headfoot - * *Definition* = The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003509] + * *Definition* = The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003509 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0009143.md b/md/UBERON/43/UBERON_0009143.md index 41c81c3fce..18ba1ba281 100644 --- a/md/UBERON/43/UBERON_0009143.md +++ b/md/UBERON/43/UBERON_0009143.md @@ -7,9 +7,9 @@ ## Synonyms - * oesophageal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000654] + * oesophageal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000654 ] * esophageal region - * oesophageal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16700] + * oesophageal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16700 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0009643.md b/md/UBERON/43/UBERON_0009643.md index 2b2e11756c..33ff925f09 100644 --- a/md/UBERON/43/UBERON_0009643.md +++ b/md/UBERON/43/UBERON_0009643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009643 * *Label* = central tegmental tract - * *Definition* = A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010012] + * *Definition* = A pathway containing fibers from midbrain nuclei that project to the inferior olivary complex, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to several nuclei of the thalamus. It can be identified in the midbrain and the pons (Adapted from Brain Info). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010012 ] ## Synonyms @@ -26,8 +26,8 @@ * [tract of brain](../../UBERON/02/UBERON_0007702.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter](../../UBERON/16/UBERON_0002316.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pontine tegmentum](../../UBERON/23/UBERON_0003023.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum[Wikipedia:Central_tegmental_tract]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0009743.md b/md/UBERON/43/UBERON_0009743.md index c5edcddae0..e80912baad 100644 --- a/md/UBERON/43/UBERON_0009743.md +++ b/md/UBERON/43/UBERON_0009743.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009743 * *Label* = visceral yolk sac cavity - * *Definition* = the closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011201] + * *Definition* = the closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011201 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [visceral yolk sac](../../UBERON/52/UBERON_0008852.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0009843.md b/md/UBERON/43/UBERON_0009843.md index 877cf71c4f..e887bafd06 100644 --- a/md/UBERON/43/UBERON_0009843.md +++ b/md/UBERON/43/UBERON_0009843.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009843 * *Label* = prostate epithelial cord - * *Definition* = A solid cord of prostate epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060527[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * *Definition* = A solid cord of prostate epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060527, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] * *Comment* = Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204] ## Synonyms - * cord of prostate epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * cord of prostate epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] * epithelial cord of prostate ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial cord](../../UBERON/54/UBERON_0005154.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010143.md b/md/UBERON/43/UBERON_0010143.md index 14d3ed4702..7159d3fa9a 100644 --- a/md/UBERON/43/UBERON_0010143.md +++ b/md/UBERON/43/UBERON_0010143.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010143 * *Label* = seminal vesicle fluid - * *Definition* = A bodily secretion that secreted_by a seminal vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bodily secretion that secreted_by a seminal vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: in ncit, seminal fluid is a subtype of seminal vesicle secretion ## Synonyms - * secretion of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62969] - * seminal vesicle secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62969] + * secretion of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62969 ] + * seminal vesicle secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62969 ] * vesicular fluid - * seminal fluid [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * seminal fluid [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references * FMA:62969 * MA:0002526 - * UMLS:C0036614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminal_Fluid] - * UMLS:C0227987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminal_Vesicle_Secretion] + * UMLS:C0036614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminal_Fluid ] + * UMLS:C0227987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminal_Vesicle_Secretion ] * ncithesaurus:Seminal_Fluid * ncithesaurus:Seminal_Vesicle_Secretion @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010243.md b/md/UBERON/43/UBERON_0010243.md index dcc7c2d7d1..3663cf73f0 100644 --- a/md/UBERON/43/UBERON_0010243.md +++ b/md/UBERON/43/UBERON_0010243.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010243 * *Label* = merocrine gland - * *Definition* = One in which the secretory cells maintain their integrity throughout the secretory cycle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002324[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Merocrine] + * *Definition* = One in which the secretory cells maintain their integrity throughout the secretory cycle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002324, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Merocrine ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [exocytosis](../../GO/87/GO_0006887.md) and [gland](../../UBERON/30/UBERON_0002530.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = merocrine - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010343.md b/md/UBERON/43/UBERON_0010343.md index 656711ecfa..24dde2d831 100644 --- a/md/UBERON/43/UBERON_0010343.md +++ b/md/UBERON/43/UBERON_0010343.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010343 * *Label* = 2nd arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 2nd arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * head mesenchyme derived arch 2 mesenchyme - * mesenchyme derived from head mesoderm of mesenchyme of 2nd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16280] + * mesenchyme derived from head mesoderm of mesenchyme of 2nd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16280 ] * pharyngeal arch 2 mesenchyme from head mesenchyme * branchial arch 2 mesenchyme from head mesenchyme @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [2nd arch mesenchyme](../../UBERON/89/UBERON_0005689.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010543.md b/md/UBERON/43/UBERON_0010543.md index 03150e7711..77c04f71d7 100644 --- a/md/UBERON/43/UBERON_0010543.md +++ b/md/UBERON/43/UBERON_0010543.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010543 * *Label* = acropodial skeleton - * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005028[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the autopodium - i.e. the bones of the digits or their cartilaginous precursors[VSAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005028, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -11,10 +11,10 @@ * acropodium skeleton * digit skeleton * digital skeleton - * set of phalanges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231315] + * set of phalanges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231315 ] * skeletal parts of acropodial region * skeleton of digits - * acropodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005028[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * acropodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005028, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * skeletal parts of acropodium ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [acropodium region](../../UBERON/54/UBERON_0012354.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010543 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010743.md b/md/UBERON/43/UBERON_0010743.md index 9e71df5566..561beaee31 100644 --- a/md/UBERON/43/UBERON_0010743.md +++ b/md/UBERON/43/UBERON_0010743.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010743 * *Label* = meningeal cluster - * *Definition* = The collection of all meningeal layers that line a central nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all meningeal layers that line a central nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: In some primitive organisms, the meningeal cluster includes only the primitive meninx ## Synonyms - * cluster of meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231572] - * meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:231572] + * cluster of meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231572 ] + * meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:231572 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = meningeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010843.md b/md/UBERON/43/UBERON_0010843.md index f3e0f9cfe2..3867be99d6 100644 --- a/md/UBERON/43/UBERON_0010843.md +++ b/md/UBERON/43/UBERON_0010843.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010843 * *Label* = clavicle cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a clavicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a clavicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0010943.md b/md/UBERON/43/UBERON_0010943.md index 192a3adc29..e8d8232acd 100644 --- a/md/UBERON/43/UBERON_0010943.md +++ b/md/UBERON/43/UBERON_0010943.md @@ -9,11 +9,11 @@ * anterior belly of digastric muscle * anterior digastric * anterior digastric muscle - * digastric, anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * digastric, anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] * digastricus anterior * digastricus anterior belly * digastricus, venter rostralis - * venter anterior (musculus digastricus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46302] + * venter anterior (musculus digastricus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46302 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid and superficial to mylohyoid muscle, and lacks the midline raphe.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010943 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0011043.md b/md/UBERON/43/UBERON_0011043.md index 01085385ad..0c846585b4 100644 --- a/md/UBERON/43/UBERON_0011043.md +++ b/md/UBERON/43/UBERON_0011043.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011043 * *Label* = obturator muscle - * *Definition* = One of: obturator externus or obturator internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_muscles] + * *Definition* = One of: obturator externus or obturator internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_muscles ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:19083 * SCTID:245024007 - * UMLS:C0224421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Muscle] + * UMLS:C0224421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Muscle ] * Wikipedia:Obturator_muscles * ncithesaurus:Obturator_Muscle @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0011143.md b/md/UBERON/43/UBERON_0011143.md index 71442b56b2..db323cb59e 100644 --- a/md/UBERON/43/UBERON_0011143.md +++ b/md/UBERON/43/UBERON_0011143.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011143 * *Label* = upper urinary tract - * *Definition* = Subdivision of urinary system which consists of the kidney and the ureters. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45658] + * *Definition* = Subdivision of urinary system which consists of the kidney and the ureters. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45658 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0011343.md b/md/UBERON/43/UBERON_0011343.md index b48cfa18f4..c3538e46fd 100644 --- a/md/UBERON/43/UBERON_0011343.md +++ b/md/UBERON/43/UBERON_0011343.md @@ -6,8 +6,8 @@ ## Synonyms - * medial surface of ramus of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59464] - * medial surface of mandibular ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59464] + * medial surface of ramus of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59464 ] + * medial surface of mandibular ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59464 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0011643.md b/md/UBERON/43/UBERON_0011643.md index a2781ae7f8..20f2a3451c 100644 --- a/md/UBERON/43/UBERON_0011643.md +++ b/md/UBERON/43/UBERON_0011643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011643 * *Label* = puboischiofemoralis internus muscle - * *Definition* = a single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = a single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Taxon notes: 3 muscles differentiate from this: psoas, iliacus and pectineus. ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0012243.md b/md/UBERON/43/UBERON_0012243.md index bb5039605d..a85155c0e2 100644 --- a/md/UBERON/43/UBERON_0012243.md +++ b/md/UBERON/43/UBERON_0012243.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012243 * *Label* = nuptial pad - * *Definition* = Raised calluses of cornified epidermis used by the male to hold the female during mating. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Raised calluses of cornified epidermis used by the male to hold the female during mating. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * nuptial ball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuptial_pad] - * nuptial excrescence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuptial_pad] - * thumb pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuptial_pad] + * nuptial ball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuptial_pad ] + * nuptial excrescence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuptial_pad ] + * thumb pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuptial_pad ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012243 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0012343.md b/md/UBERON/43/UBERON_0012343.md index 85485f3cc4..387434636b 100644 --- a/md/UBERON/43/UBERON_0012343.md +++ b/md/UBERON/43/UBERON_0012343.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [navicular bursa](../../UBERON/34/UBERON_0012334.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012343 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0012443.md b/md/UBERON/43/UBERON_0012443.md index 922d14827f..a6c273d019 100644 --- a/md/UBERON/43/UBERON_0012443.md +++ b/md/UBERON/43/UBERON_0012443.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0012643.md b/md/UBERON/43/UBERON_0012643.md index a3147fc902..e003898730 100644 --- a/md/UBERON/43/UBERON_0012643.md +++ b/md/UBERON/43/UBERON_0012643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012643 * *Label* = plume - * *Definition* = Vascularized tip of their free end of a tubeworm which is an organ for exchanging compounds with the environment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Giant_tube_worm#Body_structure] + * *Definition* = Vascularized tip of their free end of a tubeworm which is an organ for exchanging compounds with the environment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Giant_tube_worm#Body_structure ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0013143.md b/md/UBERON/43/UBERON_0013143.md index ac81c9e670..934fed000b 100644 --- a/md/UBERON/43/UBERON_0013143.md +++ b/md/UBERON/43/UBERON_0013143.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013143 * *Label* = gastrocnemius vein - * *Definition* = A vein that drains the gastrocnemius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that drains the gastrocnemius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = divided in medial gastrocnemius vein (vena medialis gastrocnemii), lateral gastrocnemius vein (vena lateralis gastrocnemii), and intergemellar vein (Vena intergemellaris), the vein ascending between the two heads of the gastrocnemius[http://www.veinsurg.com/fr/biblio/echodoppler/echodoppler_11.php] ## Synonyms * vein of gastrocnemius muscle - * vena gastrocnemii [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena gastrocnemii [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [gastrocnemius](../../UBERON/88/UBERON_0001388.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013143 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0013543.md b/md/UBERON/43/UBERON_0013543.md index 98f72c8a44..9b4f3c0991 100644 --- a/md/UBERON/43/UBERON_0013543.md +++ b/md/UBERON/43/UBERON_0013543.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013543 * *Label* = Brodmann (1909) area 12 - * *Definition* = Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_12] + * *Definition* = Brodmann area 12 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It occupies the most rostral portion of the frontal lobe. Brodmann-1909 did not regard it as homologous, either topographically or cytoarchitecturally, to rostral area 12 of the human. Distinctive features (Brodmann-1905): a quite distinct internal granular layer (IV) separates slender pyramidal cells of the external pyramidal layer (III) and the internal pyramidal layer (V); the multiform layer (VI) is expanded, contains widely dispersed spindle cells and merges gradually with the underlying cortical white matter; all cells, including the pyramidal cells of the external and internal pyramidal layers are inordinately small; the internal pyramidal layer (V) also contains spindle cells in groups of two to five located close to its border with the internal granular layer (IV). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_12 ] ## Synonyms - * B09-12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * Brodmann (1909) area 12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * Brodmann area 12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68609] - * Brodmann area 12, prefrontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * area 12 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68609] - * area 12 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * area praefrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * frontopolar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68609] - * B09-12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area praefrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1743] - * fronto-polar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FPA] - * sulcus fronto-orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:77[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * Brodmann (1909) area 12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * Brodmann area 12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68609 ] + * Brodmann area 12, prefrontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * area 12 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68609 ] + * area 12 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * area praefrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * frontopolar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68609 ] + * B09-12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area praefrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1743 ] + * fronto-polar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FPA ] + * sulcus fronto-orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:77, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:FPA * FMA:68609 * NIF_GrossAnatomy:birnlex_1743 - * NeuroNames:77 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1743] - * UMLS:C1272534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1743] + * NeuroNames:77 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1743 ] + * UMLS:C1272534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1743 ] * Wikipedia:Brodmann_area_12 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013530 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013543 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0013643.md b/md/UBERON/43/UBERON_0013643.md index 89498c7d8b..5fa0c1436a 100644 --- a/md/UBERON/43/UBERON_0013643.md +++ b/md/UBERON/43/UBERON_0013643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013643 * *Label* = lophophore - * *Definition* = A ring of ciliated tentacles surrounding the mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lophophore] + * *Definition* = A ring of ciliated tentacles surrounding the mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lophophore ] * *Comment* = In the Entoprocta the anus is within the ring of the lophophore ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0013743.md b/md/UBERON/43/UBERON_0013743.md index 6b9a5b6505..1f3aa458c2 100644 --- a/md/UBERON/43/UBERON_0013743.md +++ b/md/UBERON/43/UBERON_0013743.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013743 * *Label* = base of crypt of lieberkuhn of small intestine - * *Definition* = The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The basal portion (further from lumen) of a intestinal crypt that is located in the small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [base of crypt of lieberkuhn](../../UBERON/39/UBERON_0013739.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013743 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0014443.md b/md/UBERON/43/UBERON_0014443.md index 0323c9e08c..bc417a3592 100644 --- a/md/UBERON/43/UBERON_0014443.md +++ b/md/UBERON/43/UBERON_0014443.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014443 * *Label* = inferior ischial ramus - * *Definition* = The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ramus_of_the_ischium] + * *Definition* = The Inferior Ramus of the ischium (ascending ramus) is the thin, flattened part of the ischium, which ascends from the superior ramus, and joins the inferior ramus of the pubisbthe junction being indicated in the adult by a raised line. The outer surface is uneven for the origin of the obturator externus and some of the fibers of the adductor magnus; its inner surface forms part of the anterior wall of the pelvis. Its medial border is thick, rough, slightly everted, forms part of the outlet of the pelvis, and presents two ridges and an intervening space. The ridges are continuous with similar ones on the inferior ramus of the pubis: to the outer is attached the deep layer of the superficial perineal fascia (fascia of Colles), and to the inner the inferior fascia of the urogenital diaphragm. If these two ridges be traced downward, they will be found to join with each other just behind the point of origin of the transversus perinC&i; here the two layers of fascia are continuous behind the posterior border of the muscle. To the intervening space, just in front of the point of junction of the ridges, the transversus perinC&i is attached, and in front of this a portion of the crus penis vel clitoridis and the ischiocavernosus. Its lateral border is thin and sharp, and forms part of the medial margin of the obturator foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ramus_of_the_ischium ] ## Synonyms - * inferior rami of the pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ramus_of_the_ischium] + * inferior rami of the pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ramus_of_the_ischium ] * inferior ramus of ischium ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014443 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0014543.md b/md/UBERON/43/UBERON_0014543.md index aad68ccf16..1553678977 100644 --- a/md/UBERON/43/UBERON_0014543.md +++ b/md/UBERON/43/UBERON_0014543.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014543 * *Label* = lumbar spinal cord central canal - * *Definition* = Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1604] + * *Definition* = Part of central canal lying within the lumbar spinal cord. It is continuous rostrally with the central canal of the thoracic spinal cord and caudally with the central canal of the sacral spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1604 ] ## Synonyms - * lumbar spinal cord central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1604[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * lumbar spinal cord central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1604, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] ## Cross-references * NIF_GrossAnatomy:birnlex_1604 * SCTID:280406001 - * UMLS:C0228644 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1604] + * UMLS:C0228644 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1604 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of spinal cord central canal](../../UBERON/38/UBERON_0014538.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [lumbar spinal cord](../../UBERON/92/UBERON_0002792.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014543 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0014643.md b/md/UBERON/43/UBERON_0014643.md index 0df43505b4..5f056a5cc3 100644 --- a/md/UBERON/43/UBERON_0014643.md +++ b/md/UBERON/43/UBERON_0014643.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014643 * *Label* = spinoocerebellum - * *Definition* = A phylogenetic subdivision of the cerenellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] + * *Definition* = A phylogenetic subdivision of the cerenellum, the intermediate part, which regulates body and limb movements. It receives proprioception input from the dorsal columns of the spinal cord (including the spinocerebellar tract) and the trigeminal nerve, as well as from visual and auditory systems. It sends fibres to deep cerebellar nuclei which in turn project to both the cerebral cortex and the brain stem, thus providing modulation of descending motor systems. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions ] ## Synonyms @@ -19,8 +19,8 @@ * [regional part of cerebellum](../../UBERON/46/UBERON_0002946.md) * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar vermis](../../UBERON/20/UBERON_0004720.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014643 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0014843.md b/md/UBERON/43/UBERON_0014843.md index 9a5a12f8e5..87f191559a 100644 --- a/md/UBERON/43/UBERON_0014843.md +++ b/md/UBERON/43/UBERON_0014843.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014843 * *Label* = pubioischiofemoralis internus muscle - * *Definition* = A dorsal muscle of lower tetrapods that runs from the lumbar region and girdle to the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A dorsal muscle of lower tetrapods that runs from the lumbar region and girdle to the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014843 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_0015043.md b/md/UBERON/43/UBERON_0015043.md index 63463fcde8..d475e96be8 100644 --- a/md/UBERON/43/UBERON_0015043.md +++ b/md/UBERON/43/UBERON_0015043.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015043 * *Label* = manual digit 1 metacarpus endochondral element - * *Definition* = A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 1 metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 1 metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 1 metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 1 metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [manual digit 1 metacarpus cartilage element](../../UBERON/70/UBERON_0010570.md)or[manual digit 1 metacarpus pre-cartilage condensation](../../UBERON/65/UBERON_0010565.md)or[metacarpal bone of digit 1](../../UBERON/45/UBERON_0003645.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015043 + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2000043.md b/md/UBERON/43/UBERON_2000043.md index 7157e9074d..8c4f5b14bf 100644 --- a/md/UBERON/43/UBERON_2000043.md +++ b/md/UBERON/43/UBERON_2000043.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000043[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000043, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_2000343.md b/md/UBERON/43/UBERON_2000343.md index 70010507dc..e374d00cc2 100644 --- a/md/UBERON/43/UBERON_2000343.md +++ b/md/UBERON/43/UBERON_2000343.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_2000643.md b/md/UBERON/43/UBERON_2000643.md index 542752ac31..40a5eb1e03 100644 --- a/md/UBERON/43/UBERON_2000643.md +++ b/md/UBERON/43/UBERON_2000643.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2000743.md b/md/UBERON/43/UBERON_2000743.md index eb746c8807..4754a0f983 100644 --- a/md/UBERON/43/UBERON_2000743.md +++ b/md/UBERON/43/UBERON_2000743.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000743 * *Label* = epaxial region somite 2 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2000843.md b/md/UBERON/43/UBERON_2000843.md index f60981555f..070477eb94 100644 --- a/md/UBERON/43/UBERON_2000843.md +++ b/md/UBERON/43/UBERON_2000843.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000843[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000843, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_2001043.md b/md/UBERON/43/UBERON_2001043.md index f0fd7785fc..58dff8d124 100644 --- a/md/UBERON/43/UBERON_2001043.md +++ b/md/UBERON/43/UBERON_2001043.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001043 * *Label* = sclerotome somite 27 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2001143.md b/md/UBERON/43/UBERON_2001143.md index d2646caeca..63376a9e6b 100644 --- a/md/UBERON/43/UBERON_2001143.md +++ b/md/UBERON/43/UBERON_2001143.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001143 * *Label* = tooth 4V - * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 4 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2001243.md b/md/UBERON/43/UBERON_2001243.md index 9b0ed19c0c..ce2204d571 100644 --- a/md/UBERON/43/UBERON_2001243.md +++ b/md/UBERON/43/UBERON_2001243.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001243 * *Label* = epibranchial 1 bone - * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and medially with pharyngobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone and medially with pharyngobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2001343.md b/md/UBERON/43/UBERON_2001343.md index 6f59255a8b..8d0e78a3a8 100644 --- a/md/UBERON/43/UBERON_2001343.md +++ b/md/UBERON/43/UBERON_2001343.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2001843.md b/md/UBERON/43/UBERON_2001843.md index df8f0ba680..4a2cf39533 100644 --- a/md/UBERON/43/UBERON_2001843.md +++ b/md/UBERON/43/UBERON_2001843.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001843 * *Label* = ceratohyal-dorsal hypohyal joint - * *Definition* = Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [ceratohyal bone](../../UBERON/11/UBERON_0011611.md) and [core#connects](../../ts/core#connects.md) some [dorsal hypohyal bone](../../UBERON/96/UBERON_2000196.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2001943.md b/md/UBERON/43/UBERON_2001943.md index c2a379436e..a69940ef3e 100644 --- a/md/UBERON/43/UBERON_2001943.md +++ b/md/UBERON/43/UBERON_2001943.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001943 * *Label* = metapterygoid-autopalatine ligament - * *Definition* = Ligament that connects the metapterygoid to the autopalatine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that connects the metapterygoid to the autopalatine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2002043.md b/md/UBERON/43/UBERON_2002043.md index d5e7364766..f9d2982f35 100644 --- a/md/UBERON/43/UBERON_2002043.md +++ b/md/UBERON/43/UBERON_2002043.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002043 * *Label* = posterior limb of parapophysis 4 - * *Definition* = Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * posterior branch of parapophysis 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002043] - * posterior wing of parapophysis 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002043] + * posterior branch of parapophysis 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002043 ] + * posterior wing of parapophysis 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002043 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2005343.md b/md/UBERON/43/UBERON_2005343.md index acb6fe0c94..12e5c2e3e6 100644 --- a/md/UBERON/43/UBERON_2005343.md +++ b/md/UBERON/43/UBERON_2005343.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005343 * *Label* = endohypothalamic tract - * *Definition* = CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-091221-28] + * *Definition* = CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-091221-28 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_2007043.md b/md/UBERON/43/UBERON_2007043.md index ce30be279d..0f17e450f3 100644 --- a/md/UBERON/43/UBERON_2007043.md +++ b/md/UBERON/43/UBERON_2007043.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3000443.md b/md/UBERON/43/UBERON_3000443.md index d4afce2ec6..e2def68fe6 100644 --- a/md/UBERON/43/UBERON_3000443.md +++ b/md/UBERON/43/UBERON_3000443.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000443 * *Label* = plectral apparatus - * *Definition* = Complex sound-conducting anatomical structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Complex sound-conducting anatomical structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3000543.md b/md/UBERON/43/UBERON_3000543.md index c4c94721f4..3573c267af 100644 --- a/md/UBERON/43/UBERON_3000543.md +++ b/md/UBERON/43/UBERON_3000543.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000543 * *Label* = retroarticular process - * *Definition* = Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3000743.md b/md/UBERON/43/UBERON_3000743.md index abd70f1412..509b8cd750 100644 --- a/md/UBERON/43/UBERON_3000743.md +++ b/md/UBERON/43/UBERON_3000743.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000743 * *Label* = sacral condyle - * *Definition* = Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3000943.md b/md/UBERON/43/UBERON_3000943.md index c6c53a18a3..8ac49da295 100644 --- a/md/UBERON/43/UBERON_3000943.md +++ b/md/UBERON/43/UBERON_3000943.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000943 * *Label* = pseudofirmisternal girdle - * *Definition* = Modified arciferal pectoral girdle in which the fusion of the epicoracoid cartilages in the interclavicle region is extended posteriorly. Thus, the cartilages no longer overlap freely, and functionally a partially firmisternal condition is created. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Modified arciferal pectoral girdle in which the fusion of the epicoracoid cartilages in the interclavicle region is extended posteriorly. Thus, the cartilages no longer overlap freely, and functionally a partially firmisternal condition is created. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3010243.md b/md/UBERON/43/UBERON_3010243.md index e4834f3680..524f133ee7 100644 --- a/md/UBERON/43/UBERON_3010243.md +++ b/md/UBERON/43/UBERON_3010243.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_3010543.md b/md/UBERON/43/UBERON_3010543.md index 5ece151c08..cb7a74675c 100644 --- a/md/UBERON/43/UBERON_3010543.md +++ b/md/UBERON/43/UBERON_3010543.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002433 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_3010743.md b/md/UBERON/43/UBERON_3010743.md index 65d5519e76..67e7dac8c7 100644 --- a/md/UBERON/43/UBERON_3010743.md +++ b/md/UBERON/43/UBERON_3010743.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010743 * *Label* = M. flexor antibrachii lateralis superficialis - * *Definition* = Originates as a superior and inferior head. The superior head originates on the outer edge of the humerus and the inferior head originates on the lateral epicondyle of the humerus. Both bellies converge to form a tendon, which inserts on the carpus and the extensor tendon of digit I. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates as a superior and inferior head. The superior head originates on the outer edge of the humerus and the inferior head originates on the lateral epicondyle of the humerus. Both bellies converge to form a tendon, which inserts on the carpus and the extensor tendon of digit I. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/43/UBERON_4000043.md b/md/UBERON/43/UBERON_4000043.md index aec1c6e284..e41926d451 100644 --- a/md/UBERON/43/UBERON_4000043.md +++ b/md/UBERON/43/UBERON_4000043.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000043 * *Label* = obsolete precementoblast - * *Definition* = Skeletogenic cell that has the potential to develop into a cementoblast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that has the potential to develop into a cementoblast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007002 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_4000143.md b/md/UBERON/43/UBERON_4000143.md index 2cb6329576..4661433962 100644 --- a/md/UBERON/43/UBERON_4000143.md +++ b/md/UBERON/43/UBERON_4000143.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000143 * *Label* = obsolete endochondral ossification - * *Definition* = Replacement ossification wherein bone tissue replaces cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Replacement ossification wherein bone tissue replaces cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0001958 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/43/UBERON_4200043.md b/md/UBERON/43/UBERON_4200043.md index d0b948618f..997b828bad 100644 --- a/md/UBERON/43/UBERON_4200043.md +++ b/md/UBERON/43/UBERON_4200043.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0000044.md b/md/UBERON/44/UBERON_0000044.md index ea9cbb0709..1bd52fe3ae 100644 --- a/md/UBERON/44/UBERON_0000044.md +++ b/md/UBERON/44/UBERON_0000044.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000044 * *Label* = dorsal root ganglion - * *Definition* = ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_root_ganglion] + * *Definition* = ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_root_ganglion ] * *Comment* = Development notes: The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the 'dorsal' cranial nerves arise from epibranchial placodes as well as the neural crest[doi: 10.1093/icb/icn065]. Other ontology notes: FMA treats dorsal root ganglion and spinal ganglion as equivalent labels. MA is the only ontology to introduce two classes here (also EHDAA2) ## Synonyms - * dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001264] - * ganglion of dorsal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5888] - * spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5888] + * dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001264 ] + * ganglion of dorsal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5888 ] + * spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5888 ] * DRG - * dorsal root ganglia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ganglion sensorium nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001264] - * ganglion sensorium nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_root_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion spinale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001264] + * dorsal root ganglia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ganglion sensorium nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001264 ] + * ganglion sensorium nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_root_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion spinale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001264 ] ## Cross-references @@ -38,8 +38,8 @@ * NIF_GrossAnatomy:birnlex_2596 * SCTID:244455004 * TAO:0000200 - * UMLS:C0017070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2596] - * UMLS:C0017070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Root_Ganglion] + * UMLS:C0017070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2596 ] + * UMLS:C0017070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Root_Ganglion ] * VHOG:0000222 * Wikipedia:Dorsal_root_ganglion * XAO:0000210 @@ -64,7 +64,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal root of spinal cord](../../UBERON/61/UBERON_0002261.md) ## Other Logical Axioms @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = From comparative analyses of craniate brains, a morphotype of the brain in the earliest craniate stock can be constructed. In marked contrast to cephalochordates, the ancestral craniate morphotype had a plethora of unique features, which included a telencephalon with pallial and subpallial parts, paired olfactory bulbs with substantial projections to most or all of the telencephalic pallium, paired lateral eyes and ears, a lateral line system for both electroreception and mechanoreception, spinal cord dorsal root ganglia, and an autonomic nervous system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0000144.md b/md/UBERON/44/UBERON_0000144.md index ff45a14332..ab960b8b93 100644 --- a/md/UBERON/44/UBERON_0000144.md +++ b/md/UBERON/44/UBERON_0000144.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000144 * *Label* = trochlea of humerus - * *Definition* = The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlea_of_humerus] + * *Definition* = The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlea_of_humerus ] ## Synonyms - * humeral trochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23370] - * trochlea humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlea_of_humerus] + * humeral trochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23370 ] + * trochlea humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlea_of_humerus ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0000344.md b/md/UBERON/44/UBERON_0000344.md index 1abc04573c..28a45dd0f9 100644 --- a/md/UBERON/44/UBERON_0000344.md +++ b/md/UBERON/44/UBERON_0000344.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000344 * *Label* = mucosa - * *Definition* = A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucous_membrane] + * *Definition* = A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucous_membrane ] * *Comment* = AO notes: FMA has mucosa vs region of mucosa; these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately ## Synonyms - * mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85355] - * mucosa of organ part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85358] - * mucosal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85358] - * mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85355] - * organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85355] - * region of mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85358] - * tunica mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000886] - * tunica mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucous_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85355 ] + * mucosa of organ part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85358 ] + * mucosal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85358 ] + * mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85355 ] + * organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85355 ] + * region of mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85358 ] + * tunica mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000886 ] + * tunica mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucous_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,7 +30,7 @@ * MESH:A10.615.550 * OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA * SCTID:361693009 - * UMLS:C0026724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mucosa] + * UMLS:C0026724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mucosa ] * Wikipedia:Mucous_membrane * galen:Mucosa * http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png @@ -54,8 +54,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mucosal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0000444.md b/md/UBERON/44/UBERON_0000444.md index c4f891b99d..8b51b40ba7 100644 --- a/md/UBERON/44/UBERON_0000444.md +++ b/md/UBERON/44/UBERON_0000444.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000444 * *Label* = lymphoid follicle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/6[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/7] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/6, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/7 ] * *Comment* = introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle' ## Synonyms - * lymphoid nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55222] - * nodular lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55222] - * folliculus lymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002684] - * lymphatic follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002684] - * lymphatic nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002684] - * nodulus lymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002684] - * nodulus lymphoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002684] + * lymphoid nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55222 ] + * nodular lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55222 ] + * folliculus lymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002684 ] + * lymphatic follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002684 ] + * lymphatic nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002684 ] + * nodulus lymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002684 ] + * nodulus lymphoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002684 ] ## Cross-references * BTO:0002684 * FMA:55222 * SCTID:64626006 - * UMLS:C0229654 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphoid_Follicle] + * UMLS:C0229654 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphoid_Follicle ] * ncithesaurus:Lymphoid_Follicle ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0000944.md b/md/UBERON/44/UBERON_0000944.md index 4f31709b77..f5f7b7886e 100644 --- a/md/UBERON/44/UBERON_0000944.md +++ b/md/UBERON/44/UBERON_0000944.md @@ -7,7 +7,7 @@ ## Synonyms * dorsal vein - * ramus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76733[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ramus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76733, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003051 * *[consider](../../er/oboInOwl#consider.md)* = FMA:76733 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000944 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_0001044.md b/md/UBERON/44/UBERON_0001044.md index b025febf28..aa08a200b1 100644 --- a/md/UBERON/44/UBERON_0001044.md +++ b/md/UBERON/44/UBERON_0001044.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001044 * *Label* = salivary gland - * *Definition* = saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007431[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salivary_gland] + * *Definition* = saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007431, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salivary_gland ] * *Comment* = currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands ## Synonyms - * glandulae salivariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salivary_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandulae salivariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salivary_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MIAA:0000079 * OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA * SCTID:181236000 - * UMLS:C0036098 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Salivary_Gland] + * UMLS:C0036098 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Salivary_Gland ] * VHOG:0000376 * Wikipedia:Salivary_gland * galen:SalivaryGland @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [produces](../../RO/00/RO_0003000.md) some [saliva](../../UBERON/36/UBERON_0001836.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A gland that produces the saliva. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In air-feeding animals, the lack of water column to lubricate the food has been compensated for by the evolution of the salivary glands. These glands are present only in amniotes and are controlled by the parasympathetic system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001144.md b/md/UBERON/44/UBERON_0001144.md index 706c3593f0..d4f497e54d 100644 --- a/md/UBERON/44/UBERON_0001144.md +++ b/md/UBERON/44/UBERON_0001144.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001144 * *Label* = testicular vein - * *Definition* = The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376] + * *Definition* = The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376 ] * *Comment* = Comment: todo - check testicular vs spermatic vein (MA:0002218) ## Synonyms - * male gonadal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein] - * spermatic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein] - * testicle vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * testicular venous tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein] - * vein of testicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena tesicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002678] - * vena testicularis dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena testicularis sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae spermaticae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * male gonadal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein ] + * spermatic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein ] + * testicle vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * testicular venous tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein ] + * vein of testicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena tesicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002678 ] + * vena testicularis dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena testicularis sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae spermaticae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0002234 * OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA * SCTID:264496006 - * UMLS:C0226718 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spermatic_Vein] + * UMLS:C0226718 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spermatic_Vein ] * Wikipedia:Testicular_vein * http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Gray590.png/200px-Gray590.png @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [testis](../../UBERON/73/UBERON_0000473.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0001145 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001244.md b/md/UBERON/44/UBERON_0001244.md index d5ad106b4c..999ef3ae5d 100644 --- a/md/UBERON/44/UBERON_0001244.md +++ b/md/UBERON/44/UBERON_0001244.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001244 * *Label* = internal anal sphincter - * *Definition* = The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_anal_sphincter] + * *Definition* = The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_anal_sphincter ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -18,7 +18,7 @@ * EMAPA:18266 * FMA:15710 * MA:0001534 - * UMLS:C0224394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Anal_Sphincter] + * UMLS:C0224394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Anal_Sphincter ] * Wikipedia:Internal_anal_sphincter * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png * ncithesaurus:Internal_Anal_Sphincter @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001344.md b/md/UBERON/44/UBERON_0001344.md index 44fe40400c..b680bec16c 100644 --- a/md/UBERON/44/UBERON_0001344.md +++ b/md/UBERON/44/UBERON_0001344.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001344 * *Label* = epithelium of vagina - * *Definition* = the epithelial layer of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001140] + * *Definition* = the epithelial layer of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001140 ] * *Comment* = FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass (squamous) ## Synonyms - * epithelial tissue of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * vagina epithelium * vaginal epithelium - * epithelium, vaginal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000422] + * epithelium, vaginal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000422 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:30991 * FMA:19978 * MA:0001730 - * UMLS:C0920840 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vaginal_Epithelium] + * UMLS:C0920840 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vaginal_Epithelium ] * ncithesaurus:Vaginal_Epithelium ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001444.md b/md/UBERON/44/UBERON_0001444.md index def564c562..a29fcd7831 100644 --- a/md/UBERON/44/UBERON_0001444.md +++ b/md/UBERON/44/UBERON_0001444.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001544.md b/md/UBERON/44/UBERON_0001544.md index baaace1bf8..acfe977438 100644 --- a/md/UBERON/44/UBERON_0001544.md +++ b/md/UBERON/44/UBERON_0001544.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001544 * *Label* = popliteal vein - * *Definition* = The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_vein] + * *Definition* = The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena poplitea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena poplitea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.908.641 * OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA * SCTID:281065001 - * UMLS:C0032652 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Popliteal_Vein] + * UMLS:C0032652 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Popliteal_Vein ] * Wikipedia:Popliteal_vein * galen:PoplitealVein * http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png @@ -32,7 +32,7 @@ ## Superclasses * [vein](../../UBERON/38/UBERON_0001638.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) * [tributary_of](../../core#tributary/of/core#tributary_of.md) some [femoral vein](../../UBERON/61/UBERON_0001361.md) ## Equivalencies @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001644.md b/md/UBERON/44/UBERON_0001644.md index 4931a79ade..f97134b830 100644 --- a/md/UBERON/44/UBERON_0001644.md +++ b/md/UBERON/44/UBERON_0001644.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001644 * *Label* = trochlear nerve - * *Definition* = Cranial nerve that runs to the eye muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_nerve] + * *Definition* = Cranial nerve that runs to the eye muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Trochlear nerve [IV] * fourth cranial nerve - * nervus trochlearis [iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50865[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus trochlearis [iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50865, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * superior oblique nerve * trochlear IV nerve * trochlear nerve tree - * 4n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1654[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 4n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1654, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-IV * cranial nerve IV - * nerve IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:466] - * nervus trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:466 ] + * nervus trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pathetic nerve * trochlear - * trochlear nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:4n] - * trochlear nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:4n] + * trochlear nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:4n ] + * trochlear nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:4n ] ## Cross-references @@ -38,12 +38,12 @@ * MA:0001105 * MESH:A08.800.800.120.800 * NIF_GrossAnatomy:birnlex_1654 - * NeuroNames:466 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1654] + * NeuroNames:466 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1654 ] * OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA * SCTID:180939009 * TAO:0000600 - * UMLS:C0041159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1654] - * UMLS:C0041159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trochlear_Nerve] + * UMLS:C0041159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1654 ] + * UMLS:C0041159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trochlear_Nerve ] * VHOG:0000705 * Wikipedia:Trochlear_nerve * XAO:0003091 @@ -72,8 +72,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Somatic efferent nerve which supplies a single eye muscle, the m. obliquus superior.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001744.md b/md/UBERON/44/UBERON_0001744.md index 1edc651c98..2c247e664d 100644 --- a/md/UBERON/44/UBERON_0001744.md +++ b/md/UBERON/44/UBERON_0001744.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001744 * *Label* = lymphoid tissue - * *Definition* = Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphoid_tissue] + * *Definition* = Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphoid_tissue ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -20,7 +20,7 @@ * MA:0002436 * MESH:A10.549 * SCTID:181768009 - * UMLS:C0024296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphoid_Tissue] + * UMLS:C0024296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphoid_Tissue ] * Wikipedia:Lymphoid_tissue * galen:LymphoidTissue * ncithesaurus:Lymphoid_Tissue @@ -45,8 +45,9 @@ ## Other Annotations * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7776 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001844.md b/md/UBERON/44/UBERON_0001844.md index 4ef0ef4000..1cc1b10983 100644 --- a/md/UBERON/44/UBERON_0001844.md +++ b/md/UBERON/44/UBERON_0001844.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001844 * *Label* = cochlea - * *Definition* = The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlea] + * *Definition* = The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlea ] * *Comment* = AO notes: sources vary in connection to bony labyrinth. Taxon notes: The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: "In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)" ## Synonyms * cochlear part of bony labyrinth - * lagena [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000197[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * cochleae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lagena [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000197, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * cochleae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * cochlear duct - * cochlear organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000267] + * cochlear organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000267 ] ## Cross-references @@ -33,9 +33,9 @@ * OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA * SCTID:181187008 * TAO:0000374 - * UMLS:C0009195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1190] - * UMLS:C0009195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cochlea] - * UMLS:C1278895 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1190] + * UMLS:C0009195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1190 ] + * UMLS:C0009195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cochlea ] + * UMLS:C1278895 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1190 ] * VHOG:0000691 * Wikipedia:Cochlea * XAO:0000197 @@ -69,8 +69,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Because achieving high sensitivity is generally advantageous for auditory organs, it is not surprising that evidence for cochlear amplification is also seen in nonmammals. Spontaneous otoacoustic emissions (SOAEs) are narrow-band sound signals emitted from the inner ear, and it is generally assumed that their energy derives from the hair-cell molecular motors underlying cochlear amplification. However, all terrestrial vertebrates studied so far (including amphibians) show very similar SOAEs. The most parsimonious explanation for the universality of this phenomena is that some kind of amplifying mechanism is at least as old as land vertebrates themselves.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cochlear * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0001944.md b/md/UBERON/44/UBERON_0001944.md index 76fcd8abc6..62448ac479 100644 --- a/md/UBERON/44/UBERON_0001944.md +++ b/md/UBERON/44/UBERON_0001944.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001944 * *Label* = pretectal region - * *Definition* = Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pretectum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/361] + * *Definition* = Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pretectum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/361 ] * *Comment* = part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP) ## Synonyms - * area pretectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62402[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei pretectales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62402[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area pretectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62402, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei pretectales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62402, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pretectal area * pretectal nuclei * pretectum - * area praetectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:467[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus praetectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:467[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * praetectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:467[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio pretectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:467[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area praetectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:467, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus praetectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:467, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * praetectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:467, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio pretectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:467, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,10 +30,10 @@ * FMA:62402 * MA:0001062 * NIF_GrossAnatomy:birnlex_703 - * NeuroNames:467 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_703] + * NeuroNames:467 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_703 ] * SCTID:416333003 * TAO:0000418 - * UMLS:C0175354 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_703] + * UMLS:C0175354 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_703 ] * Wikipedia:Pretectum * ZFA:0000418 @@ -58,8 +58,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002044.md b/md/UBERON/44/UBERON_0002044.md index 17c92f743a..1e6b0f8e87 100644 --- a/md/UBERON/44/UBERON_0002044.md +++ b/md/UBERON/44/UBERON_0002044.md @@ -8,17 +8,17 @@ ## Synonyms * Darkshevich nucleus - * Darkshevich's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68464] - * nucleus of Darkschewitsch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68464] - * Dk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_896[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus Darkschewitsch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus Darkschewitschi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus commissurae posterioris (Riley) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus fasciculi longitudinalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of Darkschewitsch (Cajal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514] - * nucleus of Darkshevich [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514] - * nucleus of the posterior commissure (Darkschewitsch) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:514] + * Darkshevich's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68464 ] + * nucleus of Darkschewitsch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68464 ] + * Dk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_896, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus Darkschewitsch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus Darkschewitschi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus commissurae posterioris (Riley) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus fasciculi longitudinalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of Darkschewitsch (Cajal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514 ] + * nucleus of Darkshevich [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514 ] + * nucleus of the posterior commissure (Darkschewitsch) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:514 ] ## Cross-references @@ -29,9 +29,9 @@ * FMA:68464 * MA:0001072 * NIF_GrossAnatomy:birnlex_896 - * NeuroNames:514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_896] + * NeuroNames:514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_896 ] * SCTID:369250001 - * UMLS:C0262291 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_896] + * UMLS:C0262291 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_896 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002144.md b/md/UBERON/44/UBERON_0002144.md index 31da1e821b..289a3343f1 100644 --- a/md/UBERON/44/UBERON_0002144.md +++ b/md/UBERON/44/UBERON_0002144.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002144 * *Label* = peripeduncular nucleus - * *Definition* = a group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=61630] + * *Definition* = a group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=61630 ] * *Comment* = Note that FMA and NIF support this being part of midbrain tegmentum; MA places this in the thalamus and ABA supports thalamus. todo - check. for now we take a conservative position and assert overlaps for both rather than part of ## Synonyms - * peripeduncular nucleus of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72437] - * PPd [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1474[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus peripeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:520[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus peripeduncularis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:520[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * peripeduncular nucleus of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72437 ] + * PPd [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1474, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus peripeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:520, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus peripeduncularis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:520, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,9 +22,9 @@ * FMA:72437 * MA:0000875 * NIF_GrossAnatomy:birnlex_1474 - * NeuroNames:520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1474] + * NeuroNames:520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1474 ] * SCTID:25949000 - * UMLS:C0152368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1474] + * UMLS:C0152368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1474 ] ## Subsets @@ -33,8 +33,8 @@ * [nucleus of midbrain tegmentum](../../UBERON/14/UBERON_0007414.md) * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [ventral thalamus](../../UBERON/00/UBERON_0001900.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tegmentum](../../UBERON/43/UBERON_0001943.md) ## Equivalencies @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002244.md b/md/UBERON/44/UBERON_0002244.md index 72cf7be2d7..efa3b0a4a2 100644 --- a/md/UBERON/44/UBERON_0002244.md +++ b/md/UBERON/44/UBERON_0002244.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002244 * *Label* = premaxilla - * *Definition* = One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000426[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premaxilla] - * *Comment* = Editors note: requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + EHDAA2] + * *Definition* = One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000426, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premaxilla ] + * *Comment* = Editors note: requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = EHDAA2 ] ## Synonyms - * premaxillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * premaxillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] - * incisive bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisive_bone] - * os incisivum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premaxilla] - * premaxilla bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premaxilla] - * premaxillary bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Premaxilla] + * premaxillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * premaxillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] + * incisive bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisive_bone ] + * os incisivum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premaxilla ] + * premaxilla bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premaxilla ] + * premaxillary bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Premaxilla ] ## Cross-references @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) in all higher vertebrates a premaxilla is present (...) (reference 1); Although the presence of a tooth-bearing outer buccal arcade (premaxilla, maxilla, dentary) is cited as a common character of Osteichthyes, dipnoans lack all three bones (...) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002253 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002444.md b/md/UBERON/44/UBERON_0002444.md index 1f858bac7e..ef117a22e8 100644 --- a/md/UBERON/44/UBERON_0002444.md +++ b/md/UBERON/44/UBERON_0002444.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002444 * *Label* = lens fiber - * *Definition* = The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_(anatomy)#Lens_fibers] + * *Definition* = The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_(anatomy)#Lens_fibers ] * *Comment* = TODO - check plural vs singular. in FMA lens fiber is a cell - FMA:70950 Lens cell. Other ontologies don't appear to commit one way or another. ## Synonyms - * fibrae lentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76827[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fibrae lentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76827, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * lens fibers * lens fibers set * lens fibres - * set of lens fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76827] + * set of lens fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76827 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:76827 * MA:0001304 * RETIRED_EHDAA2:0000979 - * UMLS:C0229224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lens_Fiber] + * UMLS:C0229224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lens_Fiber ] * VHOG:0000444 * Wikipedia:Lens_(anatomy)#Lens_fibers * XAO:0004096 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fibres resembling a ribbon and arranged in very thin plates in the lens. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the line, or Y, or star sutures common to mammalian lenses, including those of primates. In the case of line or Y sutures, the overlapping of lens fibers in each successive shell is coincident and results in the formation of four or six three-dimensional suture planes that extend from the lens nucleus to the periphery.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002544.md b/md/UBERON/44/UBERON_0002544.md index ca5798f104..74b450479f 100644 --- a/md/UBERON/44/UBERON_0002544.md +++ b/md/UBERON/44/UBERON_0002544.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002544 * *Label* = digit - * *Definition* = one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digit_(anatomy)] + * *Definition* = one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digit_(anatomy) ] * *Comment* = todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution]. AO notes: EMAPA mapping from TH ## Synonyms - * limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000690] + * limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000690 ] ## Cross-references @@ -21,7 +21,7 @@ * MIAA:0000285 * OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA * SCTID:361367007 - * UMLS:C0582802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Digit] + * UMLS:C0582802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Digit ] * VHOG:0000944 * Wikipedia:Digit_(anatomy) * XAO:0003032 @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Our reinterpretation of the distal fin endoskeleton of Panderichthys removes the final piece of evidence supporting the formerly popular hypothesis that tetrapod digits are wholly new structures without homologues in sarcopterygian fish fins. This hypothesis, which was based partly on the complete absence of plausible digit homologues in Panderichthys (then the closest known relative of tetrapods), has already been called into question by the discovery of digit-like radials in Tiktaalik and the fact that Hox gene expression patterns closely resembling those associated with digit formation in tetrapods occur in the distal fin skeletons of paddlefish and Australian lungfish. Our new data show that Panderichthys is not an anomaly: like Tiktaalik and other fish members of the Tetrapodomorpha, it has distal radials that can be interpreted as digit homologues.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = digital * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002644.md b/md/UBERON/44/UBERON_0002644.md index cef843137b..1af08be08a 100644 --- a/md/UBERON/44/UBERON_0002644.md +++ b/md/UBERON/44/UBERON_0002644.md @@ -12,7 +12,7 @@ * BAMS:IOrG * FMA:80183 * NIF_GrossAnatomy:birnlex_1247 - * OldNeuroNames:-1278177547 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1247] + * OldNeuroNames:-1278177547 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1247 ] ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002744.md b/md/UBERON/44/UBERON_0002744.md index a963c0e32d..a83ff466da 100644 --- a/md/UBERON/44/UBERON_0002744.md +++ b/md/UBERON/44/UBERON_0002744.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002744 * *Label* = hilum of dentate nucleus - * *Definition* = the mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/hilum-of-dentate-nucleus.html] + * *Definition* = the mouth of the flasklike dentate nucleus of the cerebellum, directed inward (rostromedial), and giving exit to many of the fibers that compose the superior cerebellar peduncle or brachium conjunctivum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/hilum-of-dentate-nucleus.html ] ## Synonyms - * dentate nuclear hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72548] - * hilum nuclei dentati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:687[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hilum of the dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:687] + * dentate nuclear hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72548 ] + * hilum nuclei dentati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:687, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hilum of the dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:687 ] ## Cross-references * BAMS:hdt * FMA:72548 * NIF_GrossAnatomy:birnlex_1561 - * NeuroNames:687 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1561] + * NeuroNames:687 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1561 ] * SCTID:369055003 - * UMLS:C1289484 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1561] + * UMLS:C1289484 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1561 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002844.md b/md/UBERON/44/UBERON_0002844.md index a531265913..d3acb33189 100644 --- a/md/UBERON/44/UBERON_0002844.md +++ b/md/UBERON/44/UBERON_0002844.md @@ -6,14 +6,14 @@ ## Synonyms - * eighth cervical dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6361] - * eighth cervical spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6361] + * eighth cervical dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6361 ] + * eighth cervical spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6361 ] ## Cross-references * FMA:6361 * NIF_GrossAnatomy:birnlex_2610 - * UMLS:C0501738 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2610] + * UMLS:C0501738 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2610 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0002944.md b/md/UBERON/44/UBERON_0002944.md index 596b2e568b..b662502e28 100644 --- a/md/UBERON/44/UBERON_0002944.md +++ b/md/UBERON/44/UBERON_0002944.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002944 * *Label* = spinothalamic tract of medulla - * *Definition* = Part of spinothalamic tract that is in the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_741] + * *Definition* = Part of spinothalamic tract that is in the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_741 ] ## Synonyms - * spinothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72644[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_741] - * spinothalamic tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:810] - * tractus spinothalamicus (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:810[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spinothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72644, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_741 ] + * spinothalamic tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:810 ] + * tractus spinothalamicus (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:810, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,9 +18,9 @@ * GAID:703 * MESH:A08.186.854.761 * NIF_GrossAnatomy:birnlex_741 - * NeuroNames:810 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_741] + * NeuroNames:810 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_741 ] * SCTID:360570003 - * UMLS:C0037953 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_741] + * UMLS:C0037953 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_741 ] * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003044.md b/md/UBERON/44/UBERON_0003044.md index 08b2548eb7..7305465493 100644 --- a/md/UBERON/44/UBERON_0003044.md +++ b/md/UBERON/44/UBERON_0003044.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003044 * *Label* = uncinate fasciculus - * *Definition* = The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_fasciculus] + * *Definition* = The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_fasciculus ] ## Synonyms - * cerebral uncinate fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77636] - * cerebellospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * fasciculus fastigio-vestibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fastigiobulbar tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * hook bundle of Russell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * russell's fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus cerebello-bulbaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus uncinatus (Lewandowsky) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus uncinatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uncinate bundle of Russell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * uncinate fascicle (Russell) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * uncinate fasciculus of Russell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * uncinate fasciculus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * uncinate fasciculus of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:unc] - * uncinate fasciculus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] - * uncinate fasciculus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:597] + * cerebral uncinate fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77636 ] + * cerebellospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * fasciculus fastigio-vestibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fastigiobulbar tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * hook bundle of Russell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * russell's fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus cerebello-bulbaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus uncinatus (Lewandowsky) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus uncinatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uncinate bundle of Russell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * uncinate fascicle (Russell) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * uncinate fasciculus of Russell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * uncinate fasciculus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * uncinate fasciculus of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:unc ] + * uncinate fasciculus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] + * uncinate fasciculus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:597 ] ## Cross-references * BAMS:unc * FMA:77636 * NIF_GrossAnatomy:birnlex_983 - * NeuroNames:597 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_983] + * NeuroNames:597 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_983 ] * SCTID:369083001 - * UMLS:C0228271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_983] + * UMLS:C0228271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_983 ] * Wikipedia:Uncinate_fasciculus * http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray751.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Gray751.png/200px-Gray751.png @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003144.md b/md/UBERON/44/UBERON_0003144.md index 6d19aad728..584fcb019e 100644 --- a/md/UBERON/44/UBERON_0003144.md +++ b/md/UBERON/44/UBERON_0003144.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003005 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000089 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003144 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_0003244.md b/md/UBERON/44/UBERON_0003244.md index 818ecc6f93..6537f54335 100644 --- a/md/UBERON/44/UBERON_0003244.md +++ b/md/UBERON/44/UBERON_0003244.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003244 * *Label* = epithelium of mammary gland - * *Definition* = An epithelium that is part of a lactiferous gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lactiferous gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74445] - * epithelium of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001430] - * mammary gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74445 ] + * epithelium of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001430 ] + * mammary gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ * EMAPA:17760 * FMA:74445 * MA:0000792 - * UMLS:C0596882 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mammary_Epithelium] + * UMLS:C0596882 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mammary_Epithelium ] * VHOG:0001088 * ncithesaurus:Mammary_Epithelium @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003444.md b/md/UBERON/44/UBERON_0003444.md index cb081b25e4..734e183b09 100644 --- a/md/UBERON/44/UBERON_0003444.md +++ b/md/UBERON/44/UBERON_0003444.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003444 * *Label* = pelvis nerve - * *Definition* = A nerve that is part of a pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003544.md b/md/UBERON/44/UBERON_0003544.md index 42646e80ef..7dbf17ce04 100644 --- a/md/UBERON/44/UBERON_0003544.md +++ b/md/UBERON/44/UBERON_0003544.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003544 * *Label* = brain white matter - * *Definition* = the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008026] + * *Definition* = the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008026 ] ## Synonyms - * brain white matter of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brain white substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * white matter of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * white matter of neuraxis of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * white substance of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brain white matter of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brain white substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * white matter of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * white matter of neuraxis of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * white substance of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0000820 - * UMLS:C1706995 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain_White_Matter] + * UMLS:C1706995 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain_White_Matter ] * ncithesaurus:Brain_White_Matter ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003644.md b/md/UBERON/44/UBERON_0003644.md index e112fccc5d..ac17f407e0 100644 --- a/md/UBERON/44/UBERON_0003644.md +++ b/md/UBERON/44/UBERON_0003644.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003644 * *Label* = kidney arterial blood vessel - * *Definition* = An arterial blood vessel that is part of a kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arterial blood vessel that is part of a kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arterial blood vessel](../../UBERON/09/UBERON_0003509.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0003844.md b/md/UBERON/44/UBERON_0003844.md index ddba6a526a..e5e9b05aa1 100644 --- a/md/UBERON/44/UBERON_0003844.md +++ b/md/UBERON/44/UBERON_0003844.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003844 * *Label* = upper eyelid epithelium - * *Definition* = An epithelium that is part of a upper eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a upper eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of superior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of upper eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of superior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of upper eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior eyelid epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior eyelid epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper eyelid epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of superior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of upper eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of superior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of upper eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior eyelid epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior eyelid epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper eyelid epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004044.md b/md/UBERON/44/UBERON_0004044.md index c40adc7203..2ff1b1db0f 100644 --- a/md/UBERON/44/UBERON_0004044.md +++ b/md/UBERON/44/UBERON_0004044.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004044 * *Label* = anterior visceral endoderm - * *Definition* = the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008533] + * *Definition* = the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008533 ] * *Comment* = see also primitive streak ## Synonyms - * AVE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003361] + * AVE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003361 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004344.md b/md/UBERON/44/UBERON_0004344.md index b213d01770..5813dd4ab9 100644 --- a/md/UBERON/44/UBERON_0004344.md +++ b/md/UBERON/44/UBERON_0004344.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004344 * *Label* = cardinal vein - * *Definition* = any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004783] + * *Definition* = any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004783 ] * *Comment* = Usage notes: current we conflate the cardinal vein and cardinal vein system ## Synonyms - * Cuvierian vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004385] - * cardinal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004385] - * cardinal vein system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000213] + * Cuvierian vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004385 ] + * cardinal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004385 ] + * cardinal vein system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000213 ] ## Cross-references @@ -20,7 +20,7 @@ * EHDAA:1310 * EMAPA:16354 * SCTID:362860004 - * UMLS:C0231085 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardinal_Vein] + * UMLS:C0231085 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardinal_Vein ] * VHOG:0001197 * XAO:0000052 * ncithesaurus:Cardinal_Vein @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004444.md b/md/UBERON/44/UBERON_0004444.md index db52f53417..d5f820c1df 100644 --- a/md/UBERON/44/UBERON_0004444.md +++ b/md/UBERON/44/UBERON_0004444.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004444 * *Label* = proximal epiphysis of distal phalanx of manual digit 1 - * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a distal phalanx of manual digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * base of distal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37493] - * proximal epiphysis of distal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37493[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * base of distal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37493 ] + * proximal epiphysis of distal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37493, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 1](../../UBERON/37/UBERON_0004337.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004544.md b/md/UBERON/44/UBERON_0004544.md index 7bb76d7101..14af9e6c43 100644 --- a/md/UBERON/44/UBERON_0004544.md +++ b/md/UBERON/44/UBERON_0004544.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004544 * *Label* = epididymis epithelium - * *Definition* = A simple columnar epithelium that is part of a epididymis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A simple columnar epithelium that is part of a epididymis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Epididymis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19153] - * epithelium of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19153] + * Epididymis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19153 ] + * epithelium of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19153 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) and [simple columnar epithelium](../../UBERON/85/UBERON_0000485.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004644.md b/md/UBERON/44/UBERON_0004644.md index f3047ed133..742c315482 100644 --- a/md/UBERON/44/UBERON_0004644.md +++ b/md/UBERON/44/UBERON_0004644.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004644 * *Label* = fourth ventricle ependyma - * *Definition* = An ependyma that is part of a fourth ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ependyma that is part of a fourth ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ependyma of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242835] - * 4th ventricle ependyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000986] + * ependyma of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242835 ] + * 4th ventricle ependyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000986 ] ## Cross-references * FMA:242835 * MA:0000986 * SCTID:369277005 - * UMLS:C0228171 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fourth_Ventricle_Ependyma] + * UMLS:C0228171 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fourth_Ventricle_Ependyma ] * ncithesaurus:Fourth_Ventricle_Ependyma ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ependyma](../../UBERON/70/UBERON_0004670.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004744.md b/md/UBERON/44/UBERON_0004744.md index dbffc8bb42..b17a90b1fa 100644 --- a/md/UBERON/44/UBERON_0004744.md +++ b/md/UBERON/44/UBERON_0004744.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004744 * *Label* = articular/anguloarticular - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular ] * *Comment* = Editor notes: We create different classes for articular and malleus, in contrast to VHOG. Taxon notes (from VHOG): "According to this theory [Reichert-Gaupp theory], the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular [...]" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357. Note that TAO has a distinct class for articular - in fact we need (at least) 3 classes here - articular, anguloarticular and malleus, arranged into a single VHOG group // TODO - resolve part_of relationships ## Synonyms - * angulo-articular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000467] - * anguloarticular - malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000690] - * anguloarticular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000467] - * articular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000467] - * angulaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000028] - * angulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000028] - * dermarticulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000028] - * goniale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000028] - * operculo angulaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000028] + * angulo-articular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000467 ] + * anguloarticular - malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000690 ] + * anguloarticular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000467 ] + * articular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000467 ] + * angulaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000028 ] + * angulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000028 ] + * dermarticulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000028 ] + * goniale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000028 ] + * operculo angulaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000028 ] ## Cross-references @@ -35,9 +35,9 @@ * [endochondral bone](../../UBERON/13/UBERON_0002513.md) * [dermal bone](../../UBERON/07/UBERON_0008907.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [shares ancestor with](../../RO/58/RO_0002158.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [skeleton of lower jaw](../../UBERON/78/UBERON_0003278.md) + * [shares ancestor with](../../RO/58/RO_0002158.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) * [develops from](../../RO/02/RO_0002202.md) some [articular cartilage element](../../UBERON/02/UBERON_0011002.md) ## Equivalencies @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0004944.md b/md/UBERON/44/UBERON_0004944.md index dcf09e6710..cbf2894a13 100644 --- a/md/UBERON/44/UBERON_0004944.md +++ b/md/UBERON/44/UBERON_0004944.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004944 * *Label* = submucosa of trigone of urinary bladder - * *Definition* = A submucosa that is part of a trigone of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a trigone of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Lieutaud ' s trigone submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deep trigone submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of Lieutaud ' s trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of deep trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of trigone of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of urinary bladder trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of vesical trigone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trigone of urinary bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder trigone submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical trigone submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Lieutaud ' s trigone submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deep trigone submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of Lieutaud ' s trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of deep trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of trigone of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of urinary bladder trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of vesical trigone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trigone of urinary bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder trigone submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical trigone submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trigone of urinary bladder](../../UBERON/57/UBERON_0001257.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005044.md b/md/UBERON/44/UBERON_0005044.md index 9a19e4378e..7d35ecd2f1 100644 --- a/md/UBERON/44/UBERON_0005044.md +++ b/md/UBERON/44/UBERON_0005044.md @@ -3,37 +3,37 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005044 * *Label* = mucosa of pharyngotympanic tube - * *Definition* = A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a pharyngotympanic tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * auditory tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auditory tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auditory tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auditory tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * internal auditory tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * internal auditory tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * internal auditory tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * internal auditory tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of internal auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of internal auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of internal auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucuous membrane of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60109] - * mucuous membrane of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60109] - * organ mucosa of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of internal auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharyngotympanic tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharyngotympanic tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharyngotympanic tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharyngotympanic tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa (tuba auditiva) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60109] - * tunica mucosa (tuba auditoria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60109] + * auditory tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auditory tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auditory tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auditory tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * internal auditory tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * internal auditory tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * internal auditory tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * internal auditory tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of internal auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of internal auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of internal auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucuous membrane of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60109 ] + * mucuous membrane of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60109 ] + * organ mucosa of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of internal auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharyngotympanic tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharyngotympanic tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharyngotympanic tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharyngotympanic tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa (tuba auditiva) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60109 ] + * tunica mucosa (tuba auditoria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60109 ] ## Cross-references @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngotympanic tube](../../UBERON/93/UBERON_0002393.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005144.md b/md/UBERON/44/UBERON_0005144.md index b86a6c595f..d31d5e297a 100644 --- a/md/UBERON/44/UBERON_0005144.md +++ b/md/UBERON/44/UBERON_0005144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005144 * *Label* = metanephric glomerular capillary - * *Definition* = This process pertains to the initial formation of a structure from unspecified parts[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072277] + * *Definition* = This process pertains to the initial formation of a structure from unspecified parts[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072277 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular capillary](../../UBERON/12/UBERON_0004212.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005244.md b/md/UBERON/44/UBERON_0005244.md index 8968af0e46..952d4b69f4 100644 --- a/md/UBERON/44/UBERON_0005244.md +++ b/md/UBERON/44/UBERON_0005244.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005244 * *Label* = lobar bronchus of right lung cranial lobe - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eparterial_bronchus] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eparterial_bronchus ] ## Synonyms - * right lung cranial lobe lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001752] - * right superior lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7397] - * right upper lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7397] - * right upper lobe bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7397] - * lobar bronchus of cranial lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17992] - * eparterial bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eparterial_bronchus] + * right lung cranial lobe lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001752 ] + * right superior lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7397 ] + * right upper lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7397 ] + * right upper lobe bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7397 ] + * lobar bronchus of cranial lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17992 ] + * eparterial bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eparterial_bronchus ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0012060 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005344.md b/md/UBERON/44/UBERON_0005344.md index d4a2770d72..a55c8d0cfb 100644 --- a/md/UBERON/44/UBERON_0005344.md +++ b/md/UBERON/44/UBERON_0005344.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005344 * *Label* = peritoneal vaginal process - * *Definition* = A peritoneal diverticulum in the embryonic lower anterior abdominal wall that traverses the inguinal canal. In the male it forms the tunica vaginalis testis and normally loses its connection with the peritoneal cavity; a persistent processus vaginalis in the female is known as the canal of Nuck[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009218[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Processus_vaginalis] + * *Definition* = A peritoneal diverticulum in the embryonic lower anterior abdominal wall that traverses the inguinal canal. In the male it forms the tunica vaginalis testis and normally loses its connection with the peritoneal cavity; a persistent processus vaginalis in the female is known as the canal of Nuck[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009218, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Processus_vaginalis ] ## Synonyms - * processus vaginalis peritoneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009218] - * saccus vaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Processus_vaginalis] - * vaginal process of peritoneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009218] - * processus vaginalis peritonei masculinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Processus_vaginalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus vaginalis peritoneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009218 ] + * saccus vaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Processus_vaginalis ] + * vaginal process of peritoneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009218 ] + * processus vaginalis peritonei masculinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Processus_vaginalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * peritoneal diverticulum - * processus vaginalis peritonei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009218[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * processus vaginalis peritonei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Processus_vaginalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vaginal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Processus_vaginalis] + * processus vaginalis peritonei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009218, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * processus vaginalis peritonei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Processus_vaginalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vaginal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Processus_vaginalis ] * vaginal process of peritoneum - * vaginal process of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009218] + * vaginal process of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009218 ] * vaginal process of the peritoneum ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005444.md b/md/UBERON/44/UBERON_0005444.md index d385e6ea5d..2d635819ee 100644 --- a/md/UBERON/44/UBERON_0005444.md +++ b/md/UBERON/44/UBERON_0005444.md @@ -7,7 +7,7 @@ ## Synonyms - * polocytus primarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18650] + * polocytus primarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18650 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0000541 * *[consider](../../er/oboInOwl#consider.md)* = FMA:18650 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005444 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_0005644.md b/md/UBERON/44/UBERON_0005644.md index 39708a43ab..6b1d105f42 100644 --- a/md/UBERON/44/UBERON_0005644.md +++ b/md/UBERON/44/UBERON_0005644.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005644 * *Label* = midgut duodenum epithelium - * *Definition* = An epithelium that is part of a duodenum of midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a duodenum of midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut region of duodenum](../../UBERON/87/UBERON_0003287.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005744.md b/md/UBERON/44/UBERON_0005744.md index f7ac45aab4..a63219f3c6 100644 --- a/md/UBERON/44/UBERON_0005744.md +++ b/md/UBERON/44/UBERON_0005744.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005744 * *Label* = bone foramen - * *Definition* = Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = AO notes: in FMA and ZFA this is a conduit space, not a conduit. Note there may be some additional disambiguation required: foramen is used loosely in the sense of any opening (e.g. foramen primum). FMA appears to use cranial conduit (undefined) in the sense of any foramen of the skull (includes mental foramen, which is not in the cranium proper). ## Synonyms - * foramens@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001736] - * foramina@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001736] - * foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005386] + * foramens@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001736 ] + * foramina@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001736 ] + * foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005386 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical conduit](../../UBERON/11/UBERON_0004111.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005844.md b/md/UBERON/44/UBERON_0005844.md index ed8df9412a..74bcda1a21 100644 --- a/md/UBERON/44/UBERON_0005844.md +++ b/md/UBERON/44/UBERON_0005844.md @@ -7,10 +7,10 @@ ## Synonyms - * axial part of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2665] - * axial regional part of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2665] - * segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62420] - * spinal neuromeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001332[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * axial part of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2665 ] + * axial regional part of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2665 ] + * segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62420 ] + * spinal neuromeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001332, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0005944.md b/md/UBERON/44/UBERON_0005944.md index e9ee1a88c2..1a4a4270c4 100644 --- a/md/UBERON/44/UBERON_0005944.md +++ b/md/UBERON/44/UBERON_0005944.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005944 * *Label* = axial skeleton plus cranial skeleton - * *Definition* = Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71221[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000056[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axial_skeleton] + * *Definition* = Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71221, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000056, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axial_skeleton ] * *Comment* = See [UBERONREF:0000008] ## Synonyms - * skeleton axiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axial_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * skeleton axiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axial_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:18043 * MA:0000308 * SCTID:361725000 - * UMLS:C0222645 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axial_Skeleton] + * UMLS:C0222645 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axial_Skeleton ] * VSAO:0000056 * Wikipedia:Axial_skeleton * XAO:0004011 @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal subdivision of the central body axis including the cranium, vertebrae, notochord, ribs, and sternum.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006044.md b/md/UBERON/44/UBERON_0006044.md index e78a02c943..aa8ea83a82 100644 --- a/md/UBERON/44/UBERON_0006044.md +++ b/md/UBERON/44/UBERON_0006044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006044 * *Label* = interdigital region between pedal digits 3 and 4 - * *Definition* = An interdigital region that adjacent_to a pedal digit 3 and adjacent_to a pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a pedal digit 3 and adjacent_to a pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006144.md b/md/UBERON/44/UBERON_0006144.md index 3b73c01e23..78752814f4 100644 --- a/md/UBERON/44/UBERON_0006144.md +++ b/md/UBERON/44/UBERON_0006144.md @@ -6,7 +6,7 @@ ## Synonyms - * medial plantar vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002172] + * medial plantar vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002172 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006244.md b/md/UBERON/44/UBERON_0006244.md index 3fad278ef4..7946cd2037 100644 --- a/md/UBERON/44/UBERON_0006244.md +++ b/md/UBERON/44/UBERON_0006244.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006444.md b/md/UBERON/44/UBERON_0006444.md index 6736ddcd54..7bf41efc95 100644 --- a/md/UBERON/44/UBERON_0006444.md +++ b/md/UBERON/44/UBERON_0006444.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006444 * *Label* = annulus fibrosus - * *Definition* = A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003627] + * *Definition* = A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003627 ] ## Synonyms - * anulus fibrosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76704] - * fibrous ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003627] + * anulus fibrosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76704 ] + * fibrous ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003627 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006544.md b/md/UBERON/44/UBERON_0006544.md index 562bba9d99..c2a991d125 100644 --- a/md/UBERON/44/UBERON_0006544.md +++ b/md/UBERON/44/UBERON_0006544.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006544 * *Label* = kidney vasculature - * *Definition* = A vasculature that is part of a kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006644.md b/md/UBERON/44/UBERON_0006644.md index 036124c9c6..bf0f657580 100644 --- a/md/UBERON/44/UBERON_0006644.md +++ b/md/UBERON/44/UBERON_0006644.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006644 * *Label* = tunica albuginea of ovary - * *Definition* = The tunica albuginea is the fibrous envelope of the corpora cavernosa penis. It is comprised of approximately 5% elastin, an extensible tissue that is primarily made up of the amino acids glycine, valine, alanine, and proline. The majority of the remaining tissue is comprised of collagen, which is made up of lysine, proline, glycine, alanine, and other amino acids . The tunica albuginea is directly involved in maintaining an erection; that is due to Buck's fascia constricting the deep dorsal vein of the penis, preventing blood from leaving and thus sustaining the erect state. The trabeculC& of the tunica albuginea are more delicate, nearly uniform in size, and the meshes between them smaller than in the corpora cavernosa penis: their long diameters, for the most part, corresponding with that of the penis. The external envelope or outer coat of the corpus spongiosum is formed partly of unstriped muscular fibers, and a layer of the same tissue immediately surrounds the canal of the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_%28penis%29] + * *Definition* = The tunica albuginea is the fibrous envelope of the corpora cavernosa penis. It is comprised of approximately 5% elastin, an extensible tissue that is primarily made up of the amino acids glycine, valine, alanine, and proline. The majority of the remaining tissue is comprised of collagen, which is made up of lysine, proline, glycine, alanine, and other amino acids . The tunica albuginea is directly involved in maintaining an erection; that is due to Buck's fascia constricting the deep dorsal vein of the penis, preventing blood from leaving and thus sustaining the erect state. The trabeculC& of the tunica albuginea are more delicate, nearly uniform in size, and the meshes between them smaller than in the corpora cavernosa penis: their long diameters, for the most part, corresponding with that of the penis. The external envelope or outer coat of the corpus spongiosum is formed partly of unstriped muscular fibers, and a layer of the same tissue immediately surrounds the canal of the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_%28penis%29 ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [tunica albuginea](../../UBERON/10/UBERON_0006610.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0006844.md b/md/UBERON/44/UBERON_0006844.md index 94337c4f0a..2b28636d5c 100644 --- a/md/UBERON/44/UBERON_0006844.md +++ b/md/UBERON/44/UBERON_0006844.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006844 * *Label* = cusp of tooth - * *Definition* = A raised area of the biting surface of a tooth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Tooth_Cusp] + * *Definition* = A raised area of the biting surface of a tooth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Tooth_Cusp ] * *Comment* = This class may be obsoleted and split - the TAO class is generic, the mammalian class refers specifically to a molariform tooth ## Synonyms - * tooth cusp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56481] + * tooth cusp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56481 ] * cusp - * tooth cone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * tooth cone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references * FMA:56481 * SCTID:362107000 * TAO:0001973 - * UMLS:C0226994 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tooth_Cusp] + * UMLS:C0226994 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tooth_Cusp ] * ZFA:0005434 * ncithesaurus:Tooth_Cusp @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the elevated, somewhat pointed portions of the chewing surfaces on premolar and molar teeth - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0007144.md b/md/UBERON/44/UBERON_0007144.md index de0691b635..00aae7d41f 100644 --- a/md/UBERON/44/UBERON_0007144.md +++ b/md/UBERON/44/UBERON_0007144.md @@ -6,7 +6,7 @@ ## Synonyms - * embryo tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85540] + * embryo tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85540 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0007244.md b/md/UBERON/44/UBERON_0007244.md index b967ba3740..e3f378e205 100644 --- a/md/UBERON/44/UBERON_0007244.md +++ b/md/UBERON/44/UBERON_0007244.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007244 * *Label* = inferior olivary nucleus - * *Definition* = The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_olivary_nucleus] + * *Definition* = The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_olivary_nucleus ] ## Synonyms - * inferior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_olivary_nucleus] + * inferior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_olivary_nucleus ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0007644.md b/md/UBERON/44/UBERON_0007644.md index 8456ee63f4..0f4540b3ad 100644 --- a/md/UBERON/44/UBERON_0007644.md +++ b/md/UBERON/44/UBERON_0007644.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007644 * *Label* = thoracic lymph node - * *Definition* = A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax] + * *Definition* = A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax ] ## Synonyms - * lymph node of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12772] + * lymph node of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12772 ] ## Cross-references * FMA:12772 * SCTID:196374005 - * UMLS:C0229745 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Lymph_Node] + * UMLS:C0229745 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Lymph_Node ] * Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax * ncithesaurus:Thoracic_Lymph_Node @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph node](../../UBERON/29/UBERON_0000029.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0007744.md b/md/UBERON/44/UBERON_0007744.md index 8f80f42e24..d1125befe8 100644 --- a/md/UBERON/44/UBERON_0007744.md +++ b/md/UBERON/44/UBERON_0007744.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007744 * *Label* = metacarpophalangeal joint of manual digit 4 - * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpophalangeal joint of digit 4 - * metacarpophalangeal joint of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35258] - * metacarpophalangeal joint of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35258] - * carpometacarpophalangeal joint of fourth digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * metacarpo-phalangeal joint of digit 4 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25066] - * metacarpophalangeal joint of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35258[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpophalangeal joint of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35258 ] + * metacarpophalangeal joint of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35258 ] + * carpometacarpophalangeal joint of fourth digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * metacarpo-phalangeal joint of digit 4 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25066 ] + * metacarpophalangeal joint of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35258, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manual digit 4](../../UBERON/30/UBERON_0004330.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0007844.md b/md/UBERON/44/UBERON_0007844.md index bb35a7e35b..449ad75b5d 100644 --- a/md/UBERON/44/UBERON_0007844.md +++ b/md/UBERON/44/UBERON_0007844.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007844 * *Label* = cartilage element - * *Definition* = Skeletal element that is composed of cartilage tissue and may be permanent or transient. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000000[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal element that is composed of cartilage tissue and may be permanent or transient. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000000, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = AO notes: TAO still mixes tissue and element ## Synonyms - * cartilage organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55107] - * cartilaginous element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * chondrogenic element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000000] - * cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000000] + * cartilage organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55107 ] + * cartilaginous element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * chondrogenic element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000000 ] + * cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000000 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0008344.md b/md/UBERON/44/UBERON_0008344.md index fd042948cd..5096edd30e 100644 --- a/md/UBERON/44/UBERON_0008344.md +++ b/md/UBERON/44/UBERON_0008344.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008344 * *Label* = intestinal villus of ileum - * *Definition* = An intestinal villus in the ileum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An intestinal villus in the ileum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intestinal villus](../../UBERON/13/UBERON_0001213.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0008444.md b/md/UBERON/44/UBERON_0008444.md index 6d5df6a727..bc64abbc1f 100644 --- a/md/UBERON/44/UBERON_0008444.md +++ b/md/UBERON/44/UBERON_0008444.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008444 * *Label* = webbed manual digit - * *Definition* = A digit that is part of a webbed manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digit that is part of a webbed manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of webbed hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of webbed manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * webbed finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digit of webbed hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of webbed manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * webbed finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit](../../UBERON/44/UBERON_0002544.md) and [part_of](../../BFO/50/BFO_0000050.md) some [webbed manus](../../UBERON/41/UBERON_0008441.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0008544.md b/md/UBERON/44/UBERON_0008544.md index a8d6c54881..4881ff5e66 100644 --- a/md/UBERON/44/UBERON_0008544.md +++ b/md/UBERON/44/UBERON_0008544.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008544 * *Label* = splenius cervicis - * *Definition* = The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_cervicis_muscle] + * *Definition* = The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_cervicis_muscle ] ## Synonyms - * musculus splenius cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_cervicis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * splenius cervicis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius_cervicis_muscle] + * musculus splenius cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_cervicis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * splenius cervicis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius_cervicis_muscle ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0008844.md b/md/UBERON/44/UBERON_0008844.md index 2552855029..94bd9dd291 100644 --- a/md/UBERON/44/UBERON_0008844.md +++ b/md/UBERON/44/UBERON_0008844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008844 * *Label* = gubernaculum (female) - * *Definition* = A gubernaculum that is part of a female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gubernaculum that is part of a female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gubernaculum](../../UBERON/46/UBERON_0004346.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0008944.md b/md/UBERON/44/UBERON_0008944.md index a9da7ef063..fb785dc02b 100644 --- a/md/UBERON/44/UBERON_0008944.md +++ b/md/UBERON/44/UBERON_0008944.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008944 * *Label* = albumen - * *Definition* = Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097099[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Albumen[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764] + * *Definition* = Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097099, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Albumen, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764 ] ## Synonyms - * egg white [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097099] + * egg white [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097099 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0009044.md b/md/UBERON/44/UBERON_0009044.md index f368365991..0d1eb9a7e5 100644 --- a/md/UBERON/44/UBERON_0009044.md +++ b/md/UBERON/44/UBERON_0009044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009044 * *Label* = pudendal venous plexus - * *Definition* = The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_plexus_(veins)] + * *Definition* = The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_plexus_(veins) ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0009644.md b/md/UBERON/44/UBERON_0009644.md index a9c5c6f121..ad5d2067a9 100644 --- a/md/UBERON/44/UBERON_0009644.md +++ b/md/UBERON/44/UBERON_0009644.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0009744.md b/md/UBERON/44/UBERON_0009744.md index 3da8f05966..53ca38fd97 100644 --- a/md/UBERON/44/UBERON_0009744.md +++ b/md/UBERON/44/UBERON_0009744.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009744 * *Label* = lymph node medullary sinus - * *Definition* = the channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011222] + * *Definition* = the channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011222 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0009844.md b/md/UBERON/44/UBERON_0009844.md index 69894c374b..a70bd8be3f 100644 --- a/md/UBERON/44/UBERON_0009844.md +++ b/md/UBERON/44/UBERON_0009844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009844 * *Label* = urogenital sinus lumen - * *Definition* = An anatomical space that surrounded_by a primitive urogenital sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a primitive urogenital sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [primitive urogenital sinus](../../UBERON/64/UBERON_0000164.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010244.md b/md/UBERON/44/UBERON_0010244.md index 94289628bb..3b78db439b 100644 --- a/md/UBERON/44/UBERON_0010244.md +++ b/md/UBERON/44/UBERON_0010244.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010244 * *Label* = choroid tapetum lucidum - * *Definition* = A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum#Classification[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A tapetum lucidum that is part of the choroid. The choroidal tapetum lucidum lies immediately adjacent to the choriocapillaris and external to the retinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum#Classification, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: we make the assumption that the BTO class belongs here rather than with the parent; the other type is the retinal type ## Synonyms * choroidal tapetum lucidum - * tapetum choroideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001828] + * tapetum choroideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001828 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [optic choroid](../../UBERON/76/UBERON_0001776.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010344.md b/md/UBERON/44/UBERON_0010344.md index c79f367ef5..bba82a34e0 100644 --- a/md/UBERON/44/UBERON_0010344.md +++ b/md/UBERON/44/UBERON_0010344.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010344 * *Label* = 3rd arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 3rd arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * head mesenchyme derived arch 3 mesenchyme - * mesenchyme derived from head mesoderm of mesenchyme of 3rd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16403] + * mesenchyme derived from head mesoderm of mesenchyme of 3rd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16403 ] * pharyngeal arch 3 mesenchyme from head mesenchyme * branchial arch 3 mesenchyme from head mesenchyme @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [3rd arch mesenchyme](../../UBERON/90/UBERON_0005690.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010544.md b/md/UBERON/44/UBERON_0010544.md index 7042840fe4..0b0e48585b 100644 --- a/md/UBERON/44/UBERON_0010544.md +++ b/md/UBERON/44/UBERON_0010544.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010544 * *Label* = metacarpus skeleton - * *Definition* = The metacarpus is the intermediate part of the manus skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metacarpus] + * *Definition* = The metacarpus is the intermediate part of the manus skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metacarpus ] ## Synonyms * anterior metapodial skeleton - * metacarpal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] + * metacarpal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] * metacarpal skeleton - * metacarpals [I-V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] - * metacarpals set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] - * set of metacarpal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] - * set of metacarpals [I-V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] - * set of metacarpals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71336] + * metacarpals [I-V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] + * metacarpals set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] + * set of metacarpal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] + * set of metacarpals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] + * set of metacarpals [I-V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71336 ] * skeleton of metacarpus - * anterior metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005026[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * anterior metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005026, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * fore metapodial skeleton - * fore metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000946[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/metapodial] - * metacarpalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metacarpus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fore metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000946, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/metapodial ] + * metacarpalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metacarpus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [metacarpus region](../../UBERON/53/UBERON_0004453.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the forearm corresponding to the metacarpus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010744.md b/md/UBERON/44/UBERON_0010744.md index 6a1795c30c..4f85e8e91c 100644 --- a/md/UBERON/44/UBERON_0010744.md +++ b/md/UBERON/44/UBERON_0010744.md @@ -6,7 +6,7 @@ ## Synonyms - * sacral vertebral pre-cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001774] + * sacral vertebral pre-cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001774 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [sacral vertebra endochondral element](../../UBERON/10/UBERON_0015010.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010844.md b/md/UBERON/44/UBERON_0010844.md index e18ec4289d..bb3d67a8a0 100644 --- a/md/UBERON/44/UBERON_0010844.md +++ b/md/UBERON/44/UBERON_0010844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010844 * *Label* = clavicle pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a clavicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a clavicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0010944.md b/md/UBERON/44/UBERON_0010944.md index d3bd6b688b..06dbde9b12 100644 --- a/md/UBERON/44/UBERON_0010944.md +++ b/md/UBERON/44/UBERON_0010944.md @@ -6,7 +6,7 @@ ## Synonyms - * digastric, posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * digastric, posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] * digastricus posterior * digastricus posterior belly * digastricus, venter caudalis @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branchi of facial nerve and attaches to the posterior cranial base.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011144.md b/md/UBERON/44/UBERON_0011144.md index 82c30acd34..f284c803d8 100644 --- a/md/UBERON/44/UBERON_0011144.md +++ b/md/UBERON/44/UBERON_0011144.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011144 * *Label* = adductor muscle of hip - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_muscles_of_the_hip] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_muscles_of_the_hip ] ## Synonyms - * adductor group (leg) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002267] + * adductor group (leg) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002267 ] * muscle of adductor group ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011244.md b/md/UBERON/44/UBERON_0011244.md index e8f8748b44..8bd061c872 100644 --- a/md/UBERON/44/UBERON_0011244.md +++ b/md/UBERON/44/UBERON_0011244.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011244 * *Label* = perpendicular plate of ethmoid - * *Definition* = The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perpendicular_plate_of_ethmoid_bone] + * *Definition* = The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perpendicular_plate_of_ethmoid_bone ] ## Synonyms - * lamina perpendicularis (os ethmoidale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52891] - * lamina perpendicularis of ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52891] - * perpendicular plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25114] - * lamina perpendicularis ossis ethmoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perpendicular_plate_of_ethmoid_bone] - * perpendicular plate of the ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perpendicular_plate_of_ethmoid_bone] - * vertical plate of the ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perpendicular_plate_of_ethmoid_bone] + * lamina perpendicularis (os ethmoidale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52891 ] + * lamina perpendicularis of ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52891 ] + * perpendicular plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25114 ] + * lamina perpendicularis ossis ethmoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perpendicular_plate_of_ethmoid_bone ] + * perpendicular plate of the ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perpendicular_plate_of_ethmoid_bone ] + * vertical plate of the ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perpendicular_plate_of_ethmoid_bone ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011344.md b/md/UBERON/44/UBERON_0011344.md index 94c4cc7ac9..6687dcca02 100644 --- a/md/UBERON/44/UBERON_0011344.md +++ b/md/UBERON/44/UBERON_0011344.md @@ -6,8 +6,8 @@ ## Synonyms - * lateral surface of ramus of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59463] - * lateral surface of mandibular ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59463] + * lateral surface of ramus of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59463 ] + * lateral surface of mandibular ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59463 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011644.md b/md/UBERON/44/UBERON_0011644.md index 8436f59a3e..f2e0d979b0 100644 --- a/md/UBERON/44/UBERON_0011644.md +++ b/md/UBERON/44/UBERON_0011644.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011644 * *Label* = puboischiofemoralis externus muscle - * *Definition* = a single large ventral muscle in lower tetrapods that runs from the pubis and aschium to the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = a single large ventral muscle in lower tetrapods that runs from the pubis and aschium to the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Taxon notes: obturator externus and quadratus femoris are derivatives ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011844.md b/md/UBERON/44/UBERON_0011844.md index 25d25ee7e9..d4d26f9b09 100644 --- a/md/UBERON/44/UBERON_0011844.md +++ b/md/UBERON/44/UBERON_0011844.md @@ -6,7 +6,7 @@ ## Synonyms - * areolar gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67744] + * areolar gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67744 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0011944.md b/md/UBERON/44/UBERON_0011944.md index 008c1bdb6d..22daaeceac 100644 --- a/md/UBERON/44/UBERON_0011944.md +++ b/md/UBERON/44/UBERON_0011944.md @@ -6,8 +6,8 @@ ## Synonyms - * SIV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005035] - * vitelline vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005035[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * SIV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005035 ] + * vitelline vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005035, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011944 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0012244.md b/md/UBERON/44/UBERON_0012244.md index 9476e6f92a..6a437b30bb 100644 --- a/md/UBERON/44/UBERON_0012244.md +++ b/md/UBERON/44/UBERON_0012244.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012244 * *Label* = stratum intermedium of epidermis - * *Definition* = A temporary layer between old and new skin that is invalided by white blood cells[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A temporary layer between old and new skin that is invalided by white blood cells[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0012344.md b/md/UBERON/44/UBERON_0012344.md index b26505758a..e420ae5cb4 100644 --- a/md/UBERON/44/UBERON_0012344.md +++ b/md/UBERON/44/UBERON_0012344.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012344 * *Label* = holocrine gland - * *Definition* = A gland whose discharged secretion contains entire secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002325[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Holocrine[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Holocrine_glands] + * *Definition* = A gland whose discharged secretion contains entire secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002325, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Holocrine, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Holocrine_glands ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012344 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0012444.md b/md/UBERON/44/UBERON_0012444.md index 3c73155933..5ae20547a9 100644 --- a/md/UBERON/44/UBERON_0012444.md +++ b/md/UBERON/44/UBERON_0012444.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012444 * *Label* = gastropege - * *Definition* = a single row of large ventral scales in snakes that aid locomotion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikivet.net] + * *Definition* = a single row of large ventral scales in snakes that aid locomotion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikivet.net ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0012644.md b/md/UBERON/44/UBERON_0012644.md index af50426b01..5eae3b3b2e 100644 --- a/md/UBERON/44/UBERON_0012644.md +++ b/md/UBERON/44/UBERON_0012644.md @@ -28,8 +28,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A specialised organ found in deep-sea tube worms populating hydrothermal vent environments that is colonised by chemosynthetic bacteria which supply the host worm with organic compounds. The term may be applied to similar organs in other worms[ENVO:01000165]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0013144.md b/md/UBERON/44/UBERON_0013144.md index 08e8c00fe1..33fc2dcd07 100644 --- a/md/UBERON/44/UBERON_0013144.md +++ b/md/UBERON/44/UBERON_0013144.md @@ -7,7 +7,7 @@ ## Synonyms - * genicular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44559] + * genicular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44559 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013144 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0013244.md b/md/UBERON/44/UBERON_0013244.md index 3e0e03fdf0..dd6e48e33d 100644 --- a/md/UBERON/44/UBERON_0013244.md +++ b/md/UBERON/44/UBERON_0013244.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013244 * *Label* = vaginal plate - * *Definition* = The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_plate] + * *Definition* = The vaginal plate is a precursor to the inferior portion of the vagina. They form from sinovaginal bulbs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_plate ] ## Synonyms ## Cross-references - * UMLS:C1519928 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vaginal_Plate] + * UMLS:C1519928 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vaginal_Plate ] * Wikipedia:Vaginal_plate * ncithesaurus:Vaginal_Plate @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013244 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0013544.md b/md/UBERON/44/UBERON_0013544.md index 4f3a602b64..2664b96998 100644 --- a/md/UBERON/44/UBERON_0013544.md +++ b/md/UBERON/44/UBERON_0013544.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013544 * *Label* = Brodmann (1909) area 13 - * *Definition* = Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_13] + * *Definition* = Brodmann area 13 is a subdivision of the cerebral cortex as defined on the guenon monkey and on the basis of cytoarchitecture. Brodmann area 13 is found in humans, however it seems to act as a bridge between the lateral and medial layers of the brain. Thus it is sometimes misidentified as not being a Brodmann area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_13 ] ## Synonyms - * B09-13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1744] - * Brodmann (1909) area 13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1744] - * Brodmann area 13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68610] - * area 13 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1744] - * B09-13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1744[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1744 ] + * Brodmann (1909) area 13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1744 ] + * Brodmann area 13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68610 ] + * area 13 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1744 ] + * B09-13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1744, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * FMA:68610 * NIF_GrossAnatomy:birnlex_1744 * NeuroNames:1009 - * OldNeuroNames:379923166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1744] + * OldNeuroNames:379923166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1744 ] * Wikipedia:Brodmann_area_13 ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0013644.md b/md/UBERON/44/UBERON_0013644.md index 0bbf1f83c3..70ed67716a 100644 --- a/md/UBERON/44/UBERON_0013644.md +++ b/md/UBERON/44/UBERON_0013644.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013644 * *Label* = duodenal ampulla - * *Definition* = the very first part of the duodenum which is slightly dilated. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Duodenal_cap] + * *Definition* = the very first part of the duodenum which is slightly dilated. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Duodenal_cap ] ## Synonyms - * ampulla (duodenum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14927] - * ampulla duodeni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * ampulla of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14927] - * bulbus (duodenum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14927] - * bulbus duodeni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * duodenal cap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14927] - * duodenal cap viewed radiologically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14927] + * ampulla (duodenum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14927 ] + * ampulla duodeni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * ampulla of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14927 ] + * bulbus (duodenum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14927 ] + * bulbus duodeni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * duodenal cap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14927 ] + * duodenal cap viewed radiologically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14927 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0013744.md b/md/UBERON/44/UBERON_0013744.md index 431f712e3b..641fdc360e 100644 --- a/md/UBERON/44/UBERON_0013744.md +++ b/md/UBERON/44/UBERON_0013744.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013744 * *Label* = wall of crypt of lieberkuhn of small intestine - * *Definition* = The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The lateral parts of an intestinal crypt that is located in the small intestine, continuous distally with the base and proximally with the intestinal villus epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) and [wall of crypt of lieberkuhn](../../UBERON/40/UBERON_0013740.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013744 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0014444.md b/md/UBERON/44/UBERON_0014444.md index 98af72849c..280d016573 100644 --- a/md/UBERON/44/UBERON_0014444.md +++ b/md/UBERON/44/UBERON_0014444.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [inferior pubic ramus](../../UBERON/39/UBERON_0014439.md)or[superior pubic ramus](../../UBERON/38/UBERON_0014438.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014444 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0014544.md b/md/UBERON/44/UBERON_0014544.md index ad5b260226..13b1bb1376 100644 --- a/md/UBERON/44/UBERON_0014544.md +++ b/md/UBERON/44/UBERON_0014544.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014544 * *Label* = frontomarginal sulcus - * *Definition* = The term frontomarginal sulcus (H) refers to a superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4000] + * *Definition* = The term frontomarginal sulcus (H) refers to a superficial feature of the human frontal lobe; it is located at the rostral margin of the orbital surface of the lobe (Ono-90). (NN) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4000 ] ## Synonyms - * frontomarginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4000[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * FMS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_4000[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fronto marginal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:frs] - * sulcus fronto-marginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1614[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus frontomarginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4000] + * frontomarginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4000, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * FMS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_4000, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fronto marginal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:frs ] + * sulcus fronto-marginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1614, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus frontomarginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4000 ] ## Cross-references * BAMS:frs * NIF_GrossAnatomy:birnlex_4000 - * NeuroNames:1614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4000] - * UMLS:C0262269 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4000] + * NeuroNames:1614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4000 ] + * UMLS:C0262269 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4000 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014544 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0014644.md b/md/UBERON/44/UBERON_0014644.md index 67403e0f97..70e505aed3 100644 --- a/md/UBERON/44/UBERON_0014644.md +++ b/md/UBERON/44/UBERON_0014644.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014644 * *Label* = cerebrocerebellum - * *Definition* = A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions] + * *Definition* = A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Phylogenetic_and_functional_divisions ] ## Synonyms - * cerebellum lateral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009965] - * cerebellum lateral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009965] + * cerebellum lateral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009965 ] + * cerebellum lateral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009965 ] * neocerebellum * pontocerebellum - * cerebrocerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009965[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * cerebrocerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009965, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activit[MP:0009965]y * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004005 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014644 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0014844.md b/md/UBERON/44/UBERON_0014844.md index ac602b894d..6b5e27ac06 100644 --- a/md/UBERON/44/UBERON_0014844.md +++ b/md/UBERON/44/UBERON_0014844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014844 * *Label* = pubioischiofemoralis externus muscle - * *Definition* = A ventral muscle of lower tetrapods that runs from the pubis and ischium to the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A ventral muscle of lower tetrapods that runs from the pubis and ischium to the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014844 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_0015044.md b/md/UBERON/44/UBERON_0015044.md index a263af8725..bd0823d24a 100644 --- a/md/UBERON/44/UBERON_0015044.md +++ b/md/UBERON/44/UBERON_0015044.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015044 * *Label* = manual digit 2 metacarpus endochondral element - * *Definition* = A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 2 metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 2 metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 2 metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 2 metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [manual digit 2 metacarpus cartilage element](../../UBERON/71/UBERON_0010571.md)or[manual digit 2 metacarpus pre-cartilage condensation](../../UBERON/66/UBERON_0010566.md)or[metacarpal bone of digit 2](../../UBERON/46/UBERON_0003646.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015044 + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2000044.md b/md/UBERON/44/UBERON_2000044.md index 24045cd704..5bdb5e87ba 100644 --- a/md/UBERON/44/UBERON_2000044.md +++ b/md/UBERON/44/UBERON_2000044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000044 * *Label* = myotome somite 14 - * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2000544.md b/md/UBERON/44/UBERON_2000544.md index a333c1e7fa..18b107587d 100644 --- a/md/UBERON/44/UBERON_2000544.md +++ b/md/UBERON/44/UBERON_2000544.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000544 * *Label* = pectoral fin actinotrichium - * *Definition* = Actinotrichium that is part of the pectoral fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the pectoral fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2000644.md b/md/UBERON/44/UBERON_2000644.md index cd184fe8fc..9e2c500687 100644 --- a/md/UBERON/44/UBERON_2000644.md +++ b/md/UBERON/44/UBERON_2000644.md @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_2000744.md b/md/UBERON/44/UBERON_2000744.md index 99d1cdad7c..b340f3414e 100644 --- a/md/UBERON/44/UBERON_2000744.md +++ b/md/UBERON/44/UBERON_2000744.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000744 * *Label* = epaxial region somite 22 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2000844.md b/md/UBERON/44/UBERON_2000844.md index 1b83e84049..807c09c2ee 100644 --- a/md/UBERON/44/UBERON_2000844.md +++ b/md/UBERON/44/UBERON_2000844.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000844[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000844, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_2001044.md b/md/UBERON/44/UBERON_2001044.md index 2f2da0b883..bfb3be73a6 100644 --- a/md/UBERON/44/UBERON_2001044.md +++ b/md/UBERON/44/UBERON_2001044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001044 * *Label* = sclerotome somite 3 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001144.md b/md/UBERON/44/UBERON_2001144.md index b14f83943f..57e9d6c5ab 100644 --- a/md/UBERON/44/UBERON_2001144.md +++ b/md/UBERON/44/UBERON_2001144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001144 * *Label* = tooth 2V - * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 2 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001244.md b/md/UBERON/44/UBERON_2001244.md index 2ca476c911..9dfee79a00 100644 --- a/md/UBERON/44/UBERON_2001244.md +++ b/md/UBERON/44/UBERON_2001244.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001244 * *Label* = epibranchial 5 cartilage - * *Definition* = Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * accessory cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001244] - * interbranchial IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001244] - * interbranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001244] + * accessory cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001244 ] + * interbranchial IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001244 ] + * interbranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001244 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001544.md b/md/UBERON/44/UBERON_2001544.md index 1e11316f9d..1b82a30edb 100644 --- a/md/UBERON/44/UBERON_2001544.md +++ b/md/UBERON/44/UBERON_2001544.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001544 * *Label* = sublingual cartilage - * *Definition* = Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001744.md b/md/UBERON/44/UBERON_2001744.md index bb7c428a43..33a5c6ca29 100644 --- a/md/UBERON/44/UBERON_2001744.md +++ b/md/UBERON/44/UBERON_2001744.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001744 * *Label* = replacement tooth trench - * *Definition* = Anatomical space within a bone in which teeth develop. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical space within a bone in which teeth develop. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * replacement tooth crypt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001744] - * replacement tooth crypts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001744[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * replacement tooth crypt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001744 ] + * replacement tooth crypts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001744, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001844.md b/md/UBERON/44/UBERON_2001844.md index 8af9cba11f..f8a903aa20 100644 --- a/md/UBERON/44/UBERON_2001844.md +++ b/md/UBERON/44/UBERON_2001844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001844 * *Label* = ceratohyal-ventral hypohyal joint - * *Definition* = Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [ceratohyal bone](../../UBERON/11/UBERON_0011611.md) and [core#connects](../../ts/core#connects.md) some [ventral hypohyal bone](../../UBERON/00/UBERON_2000300.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2001944.md b/md/UBERON/44/UBERON_2001944.md index aefb1afe96..d49dc33320 100644 --- a/md/UBERON/44/UBERON_2001944.md +++ b/md/UBERON/44/UBERON_2001944.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001944 * *Label* = lateral ethmoid-autopalatine ligament - * *Definition* = Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2002044.md b/md/UBERON/44/UBERON_2002044.md index 0cd2438d8c..cb9a0fc3e9 100644 --- a/md/UBERON/44/UBERON_2002044.md +++ b/md/UBERON/44/UBERON_2002044.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002044 * *Label* = anterior limb of parapophysis 4 - * *Definition* = Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * Mullerian ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002044] - * M?llerian ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002044] - * anterior branch of parapophysis 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002044] - * anterior wing of parapophysis 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002044] + * Mullerian ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002044 ] + * M?llerian ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002044 ] + * anterior branch of parapophysis 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002044 ] + * anterior wing of parapophysis 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002044 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2002144.md b/md/UBERON/44/UBERON_2002144.md index 4afd79c0da..0001655639 100644 --- a/md/UBERON/44/UBERON_2002144.md +++ b/md/UBERON/44/UBERON_2002144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002144 * *Label* = anterior catecholaminergic tract - * *Definition* = CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-091221-28] + * *Definition* = CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-091221-28 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2002244.md b/md/UBERON/44/UBERON_2002244.md index 110bb848cd..0742b95b21 100644 --- a/md/UBERON/44/UBERON_2002244.md +++ b/md/UBERON/44/UBERON_2002244.md @@ -6,7 +6,7 @@ ## Synonyms - * SOT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002244] + * SOT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002244 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2005044.md b/md/UBERON/44/UBERON_2005044.md index 7f17e28c47..a06c43984e 100644 --- a/md/UBERON/44/UBERON_2005044.md +++ b/md/UBERON/44/UBERON_2005044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005044 * *Label* = optic artery - * *Definition* = The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2005144.md b/md/UBERON/44/UBERON_2005144.md index 2faf088d63..6f1ec36731 100644 --- a/md/UBERON/44/UBERON_2005144.md +++ b/md/UBERON/44/UBERON_2005144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005144 * *Label* = ampullary nerve - * *Definition* = A branch of the 8th cranial nerve that innervates the cristae ampullaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A branch of the 8th cranial nerve that innervates the cristae ampullaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_2005244.md b/md/UBERON/44/UBERON_2005244.md index 9b52d15e5f..14c5ba893a 100644 --- a/md/UBERON/44/UBERON_2005244.md +++ b/md/UBERON/44/UBERON_2005244.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0005014 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_2005344.md b/md/UBERON/44/UBERON_2005344.md index 7cf1c59c78..e22d610475 100644 --- a/md/UBERON/44/UBERON_2005344.md +++ b/md/UBERON/44/UBERON_2005344.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3000044.md b/md/UBERON/44/UBERON_3000044.md index a535b24006..d79cfea461 100644 --- a/md/UBERON/44/UBERON_3000044.md +++ b/md/UBERON/44/UBERON_3000044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000044 * *Label* = obsolete blastomere - * *Definition* = Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010282 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_3000344.md b/md/UBERON/44/UBERON_3000344.md index 230694f13f..9b8143e335 100644 --- a/md/UBERON/44/UBERON_3000344.md +++ b/md/UBERON/44/UBERON_3000344.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000344 * *Label* = orbitonasal foramen - * *Definition* = Foramen that forms a passage for one of the branches of the trigeminal nerve into the nasal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Foramen that forms a passage for one of the branches of the trigeminal nerve into the nasal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3000644.md b/md/UBERON/44/UBERON_3000644.md index 7f74947e76..1e66705e9d 100644 --- a/md/UBERON/44/UBERON_3000644.md +++ b/md/UBERON/44/UBERON_3000644.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000644 * *Label* = processus lingularis of nasal skeleton - * *Definition* = Rod-shaped process that extends caudally from the inferior edge of the planum terminale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Rod-shaped process that extends caudally from the inferior edge of the planum terminale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms * processus lingularis - * lingular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000644] + * lingular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000644 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3000744.md b/md/UBERON/44/UBERON_3000744.md index 1fc8c42e5b..754f36c827 100644 --- a/md/UBERON/44/UBERON_3000744.md +++ b/md/UBERON/44/UBERON_3000744.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000744 * *Label* = urostyle cotyle - * *Definition* = Anterior, single or paired concave facets for articulation with the sacral condyle(s). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior, single or paired concave facets for articulation with the sacral condyle(s). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * fossa condyloidea ossis coccygei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000744] + * fossa condyloidea ossis coccygei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000744 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3000844.md b/md/UBERON/44/UBERON_3000844.md index c743aa2bc4..bfdc943d80 100644 --- a/md/UBERON/44/UBERON_3000844.md +++ b/md/UBERON/44/UBERON_3000844.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000844 * *Label* = sulcus longitudinalis - * *Definition* = In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3000944.md b/md/UBERON/44/UBERON_3000944.md index da1d2f5958..9495ce58bf 100644 --- a/md/UBERON/44/UBERON_3000944.md +++ b/md/UBERON/44/UBERON_3000944.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000944 * *Label* = pseudoarciferal girdle - * *Definition* = Modified firmisternal pectoral girdle in which the epicoracoid cartilages are partly free and overlapping; however, the epicoracoids are fused to one another and the sternum postermodially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Modified firmisternal pectoral girdle in which the epicoracoid cartilages are partly free and overlapping; however, the epicoracoids are fused to one another and the sternum postermodially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3010044.md b/md/UBERON/44/UBERON_3010044.md index 8f9f9a67d5..08592b17bd 100644 --- a/md/UBERON/44/UBERON_3010044.md +++ b/md/UBERON/44/UBERON_3010044.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3010144.md b/md/UBERON/44/UBERON_3010144.md index abd607b168..dde3b10a6b 100644 --- a/md/UBERON/44/UBERON_3010144.md +++ b/md/UBERON/44/UBERON_3010144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010144 * *Label* = odontoids - * *Definition* = Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_3010744.md b/md/UBERON/44/UBERON_3010744.md index 34d22d46ed..083659711b 100644 --- a/md/UBERON/44/UBERON_3010744.md +++ b/md/UBERON/44/UBERON_3010744.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010744 * *Label* = M. flexor antibrachii lateralis profundus - * *Definition* = Originates on the lateral epicondyle of the humerus and inserts on the lower ridge of the radioulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the lateral epicondyle of the humerus and inserts on the lower ridge of the radioulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/44/UBERON_4000044.md b/md/UBERON/44/UBERON_4000044.md index d681f27f03..5fe3c0e648 100644 --- a/md/UBERON/44/UBERON_4000044.md +++ b/md/UBERON/44/UBERON_4000044.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000044 * *Label* = obsolete prechondroblast - * *Definition* = Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007009 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_4000144.md b/md/UBERON/44/UBERON_4000144.md index bea9db78d5..80038ab9b2 100644 --- a/md/UBERON/44/UBERON_4000144.md +++ b/md/UBERON/44/UBERON_4000144.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000144 * *Label* = obsolete perichondral ossification - * *Definition* = Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = GO:0036073 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/44/UBERON_4200044.md b/md/UBERON/44/UBERON_4200044.md index 87d42f9260..668e9ad1b3 100644 --- a/md/UBERON/44/UBERON_4200044.md +++ b/md/UBERON/44/UBERON_4200044.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0000045.md b/md/UBERON/45/UBERON_0000045.md index 016115837e..cb5bf1f389 100644 --- a/md/UBERON/45/UBERON_0000045.md +++ b/md/UBERON/45/UBERON_0000045.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000045 * *Label* = ganglion - * *Definition* = A biological tissue mass, most commonly a mass of nerve cell bodies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ganglion[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300] + * *Definition* = A biological tissue mass, most commonly a mass of nerve cell bodies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ganglion, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300 ] * *Comment* = TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). ## Synonyms * ganglia - * neural ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000497] + * neural ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000497 ] ## Cross-references @@ -37,7 +37,7 @@ * NIF_GrossAnatomy:nlx_anat_100302 * TAO:0000190 * TGMA:0001016 - * UMLS:C0017067 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ganglion] + * UMLS:C0017067 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ganglion ] * VHOG:0000156 * WBbt:0005189 * Wikipedia:Ganglion @@ -71,8 +71,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ganglionic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0000345.md b/md/UBERON/45/UBERON_0000345.md index 2cc67f1d6a..4d93ee5a4d 100644 --- a/md/UBERON/45/UBERON_0000345.md +++ b/md/UBERON/45/UBERON_0000345.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000345 * *Label* = myelin - * *Definition* = a dielectric (electrically insulating) material that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myelin] + * *Definition* = a dielectric (electrically insulating) material that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myelin ] * *Comment* = editor note: cede to other ontology. Retired in ncit ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0000445.md b/md/UBERON/45/UBERON_0000445.md index 2c199e0a93..776d0e5b24 100644 --- a/md/UBERON/45/UBERON_0000445.md +++ b/md/UBERON/45/UBERON_0000445.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000445 * *Label* = habenular trigone - * *Definition* = The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Habenular_trigone] + * *Definition* = The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Habenular_trigone ] * *Comment* = superclass in BTO is thalamic nucleus, not present in most ontologies ## Synonyms - * trigone of habenulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002700] - * trigonum habenulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002700] - * trigonum habenulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Habenular_trigone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trigone of habenulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002700 ] + * trigonum habenulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002700 ] + * trigonum habenulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Habenular_trigone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0000945.md b/md/UBERON/45/UBERON_0000945.md index 099b88409b..ce956ff3fa 100644 --- a/md/UBERON/45/UBERON_0000945.md +++ b/md/UBERON/45/UBERON_0000945.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000945 * *Label* = stomach - * *Definition* = An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomach[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomach, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa [WP:Stomach#In_other_animals] ## Synonyms * stomach chamber - * Ventricular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomach[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Ventricular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomach, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * anterior intestine - * gaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001307] + * gaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001307 ] * mesenteron * ventriculus @@ -37,7 +37,7 @@ * OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA * SCTID:181246003 * TAO:0002121 - * UMLS:C0038351 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stomach] + * UMLS:C0038351 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stomach ] * VHOG:0000408 * Wikipedia:Stomach * XAO:0000128 @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of alimentary canal with increased circular and longitudinal smooth muscle. Bounded posteriorly by the pyloric sphincter. Mucosal lining has increased folding.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It appears that the stomach has an ancient origin. The stomach first appears in the fish lineage. The prevertebrate chordates do not have a true stomach, whereas the cartilaginous and bony fish do. Although most fish do have a true stomach, some fish species appear to have lost the stomach secondarily. The remaining vertebrate lineages do have a true stomach (at least in the adult animal), although there is great variation in the size and shape of the stomach.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001045.md b/md/UBERON/45/UBERON_0001045.md index b585d8015d..fe4c0801dd 100644 --- a/md/UBERON/45/UBERON_0001045.md +++ b/md/UBERON/45/UBERON_0001045.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001045 * *Label* = midgut - * *Definition* = Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007494[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midgut] + * *Definition* = Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007494, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midgut ] * *Comment* = Editor notes: Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. ## Synonyms - * mesenteron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midgut[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mesenteron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midgut, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001564 * SCTID:361410004 * TGMA:0001036 - * UMLS:C0231052 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Midgut] + * UMLS:C0231052 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Midgut ] * VHOG:0000290 * Wikipedia:Midgut * XAO:0000103 @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001145.md b/md/UBERON/45/UBERON_0001145.md index 8442ce92ef..408413d7a5 100644 --- a/md/UBERON/45/UBERON_0001145.md +++ b/md/UBERON/45/UBERON_0001145.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001145 * *Label* = ovarian vein - * *Definition* = The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_vein] + * *Definition* = The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * female reproductive system gonad vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female reproductive system gonada vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of female reproductive system vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of female reproductive system vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ovary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of female reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of female reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of gonad of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of gonada of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena ovarica dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena ovarica sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * female reproductive system gonad vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female reproductive system gonada vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of female reproductive system vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of female reproductive system vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ovary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of female reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of female reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of gonad of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of gonada of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena ovarica dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena ovarica sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0002186 * OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA * SCTID:278193003 - * UMLS:C0226720 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Vein] + * UMLS:C0226720 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Vein ] * Wikipedia:Ovarian_vein * http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Ovarschaf.jpg/200px-Ovarschaf.jpg @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001245.md b/md/UBERON/45/UBERON_0001245.md index 0d640eef93..19793b7ebf 100644 --- a/md/UBERON/45/UBERON_0001245.md +++ b/md/UBERON/45/UBERON_0001245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001245 * *Label* = anus - * *Definition* = Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html ## Synonyms @@ -28,7 +28,7 @@ * SCTID:181262009 * TADS:0000066 * TGMA:0001279 - * UMLS:C0003461 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anus] + * UMLS:C0003461 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anus ] * WBbt:0005364 * Wikipedia:Anus * galen:Anus @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distalmost_part_of](../../BSPO/08/BSPO_0001108.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) and [orifice](../../UBERON/61/UBERON_0000161.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = anal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001345.md b/md/UBERON/45/UBERON_0001345.md index 79d5a6b930..48611d3ed4 100644 --- a/md/UBERON/45/UBERON_0001345.md +++ b/md/UBERON/45/UBERON_0001345.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001345 * *Label* = obsolete fornix - * *Definition* = This class was obsoleted. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_fornix_of_brain] + * *Definition* = This class was obsoleted. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_fornix_of_brain ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -30,9 +30,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000051 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000052 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001345 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_0001445.md b/md/UBERON/45/UBERON_0001445.md index 3d6a4dc2b4..6c38899dd5 100644 --- a/md/UBERON/45/UBERON_0001445.md +++ b/md/UBERON/45/UBERON_0001445.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001445 * *Label* = skeleton of pes - * *Definition* = Subdivision of skeleton that is the collection of all skeletal elements in a pes, which is the distal section of the posterior hindlimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the ankle, sole, and toes)[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton that is the collection of all skeletal elements in a pes, which is the distal section of the posterior hindlimb skeleton consisting of the mesopodium, the metapodium and the acropodium (e.g. including the ankle, sole, and toes)[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = here 'pes' includes both the ankle region and foot proper ## Synonyms - * foot region skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002228] - * foot skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24222] + * foot region skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002228 ] + * foot skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24222 ] * pedal skeleton * pes skeleton * posterior autopodium skeleton - * set of bones of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24222] - * skeleton of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24222] - * pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * posterior autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * set of bones of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24222 ] + * skeleton of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24222 ] + * pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * posterior autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001545.md b/md/UBERON/45/UBERON_0001545.md index 86c3490e26..9d2f6f260d 100644 --- a/md/UBERON/45/UBERON_0001545.md +++ b/md/UBERON/45/UBERON_0001545.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001545 * *Label* = anterior tibial vein - * *Definition* = In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tibial_vein] + * *Definition* = In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tibial_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae tibiales anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_tibial_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae tibiales anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_tibial_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002244 * OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA * SCTID:281066000 - * UMLS:C0226833 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Tibial_Vein] + * UMLS:C0226833 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Tibial_Vein ] * Wikipedia:Anterior_tibial_vein * galen:AnteriorTibialVein * http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001545 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001645.md b/md/UBERON/45/UBERON_0001645.md index 113585769e..87041834ec 100644 --- a/md/UBERON/45/UBERON_0001645.md +++ b/md/UBERON/45/UBERON_0001645.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001645 * *Label* = trigeminal nerve - * *Definition* = Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nerve] + * *Definition* = Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nerve ] * *Comment* = Taxon notes: the ophthalmic usually usually merges with the other two. In some vertebrates, the ophthalmic emerges from the brain separately[Kardong] The trigeminal nerve has 3 branches in mammals - similar branches are present in nonmammalian vertebrates, but in some a separate profundus nerve that corresponds to opthalmic branch in mammls[ISBN10:0471888893] ## Synonyms * fifth cranial nerve - * nervus trigeminus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus trigeminus [v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50866[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigeminal V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002084] + * nervus trigeminus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus trigeminus [v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50866, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigeminal V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002084 ] * trigeminal nerve [V] * trigeminal nerve tree * trigeminal v nerve - * 5n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_869[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 5n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_869, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-V * cranial nerve V - * nerve V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:549] - * nervus trigeminus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001072] - * trigeminus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001072] + * nerve V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:549 ] + * nervus trigeminus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001072 ] + * trigeminus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001072 ] ## Cross-references @@ -39,12 +39,12 @@ * MA:0001100 * MESH:A08.800.800.120.760 * NIF_GrossAnatomy:birnlex_869 - * NeuroNames:549 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_869] + * NeuroNames:549 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_869 ] * OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA * SCTID:362459002 * TAO:0000697 - * UMLS:C0040996 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_869] - * UMLS:C0040996 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trigeminal_Nerve] + * UMLS:C0040996 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_869 ] + * UMLS:C0040996 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trigeminal_Nerve ] * VHOG:0000704 * Wikipedia:Trigeminal_nerve * XAO:0003092 @@ -76,8 +76,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nerve consists of motor and sensory components. Ganglion cells of the sensory component form the proximal part of the trigeminal (Gasserian) ganglion. From the ganglion 3 major rami innervate jaws, snout, and buccal roof.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001745.md b/md/UBERON/45/UBERON_0001745.md index 326c919681..5ba20b1016 100644 --- a/md/UBERON/45/UBERON_0001745.md +++ b/md/UBERON/45/UBERON_0001745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001745 * *Label* = secondary nodular lymphoid tissue - * *Definition* = A lymphoid follicle that contains a germinal center. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * *Definition* = A lymphoid follicle that contains a germinal center. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [germinal center](../../UBERON/54/UBERON_0010754.md) and [lymphoid follicle](../../UBERON/44/UBERON_0000444.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001845.md b/md/UBERON/45/UBERON_0001845.md index 4dc039ac49..b6ddf3b979 100644 --- a/md/UBERON/45/UBERON_0001845.md +++ b/md/UBERON/45/UBERON_0001845.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001845 * *Label* = perilymph - * *Definition* = Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perilymph] + * *Definition* = Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perilymph ] ## Synonyms - * liquor cotunnii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perilymph] - * perilympha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perilymph] + * liquor cotunnii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perilymph ] + * perilympha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perilymph ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002529 * MESH:A12.207.571.678 * TAO:0005413 - * UMLS:C0031059 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perilymph] + * UMLS:C0031059 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perilymph ] * Wikipedia:Perilymph * ZFA:0005413 * ncithesaurus:Perilymph @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0001945.md b/md/UBERON/45/UBERON_0001945.md index 5499ba67c5..06ded5c1d0 100644 --- a/md/UBERON/45/UBERON_0001945.md +++ b/md/UBERON/45/UBERON_0001945.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001945 * *Label* = superior colliculus - * *Definition* = Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1040] + * *Definition* = Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1040 ] * *Comment* = The term SC is used when discussing mammals, and OT for other vertebrates[WP]. The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. ## Synonyms @@ -11,22 +11,22 @@ * anterior colliculus * anterior corpus quadrigeminum * cranial colliculus - * optic tectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000445[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * SPINAL CORD (C1 level) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SC] - * colliculus bigeminalis oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * colliculus cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * colliculus rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * colliculus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * optic tectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000445, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * SPINAL CORD (C1 level) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SC ] + * colliculus bigeminalis oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * colliculus cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * colliculus rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * colliculus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * corpora bigemina - * corpus quadrigeminum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus quadrigeminum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * dorsal midbrain - * layers of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473] - * lobus opticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000965] - * nates [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * layers of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473 ] + * lobus opticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000965 ] + * nates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * optic lobe * optic tectum - * strata (grisea et alba) colliculi cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * strata (grisea et alba) colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:473[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * strata (grisea et alba) colliculi cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * strata (grisea et alba) colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:473, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tectal lobe * tectum * tectum opticum @@ -45,9 +45,9 @@ * MA:0001068 * MESH:A08.186.211.132.659.237.816 * NIF_GrossAnatomy:birnlex_1040 - * NeuroNames:473 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1040] + * NeuroNames:473 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1040 ] * TAO:0000445 - * UMLS:C0228405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1040] + * UMLS:C0228405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1040 ] * Wikipedia:Superior_colliculus * XAO:0003226 * ZFA:0000445 @@ -77,8 +77,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002045.md b/md/UBERON/45/UBERON_0002045.md index 703c2482a4..793e85658b 100644 --- a/md/UBERON/45/UBERON_0002045.md +++ b/md/UBERON/45/UBERON_0002045.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002045 * *Label* = cuneate nucleus - * *Definition* = One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_nucleus] + * *Definition* = One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Burdach's nucleus - * burdachs nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2640] - * cuneate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2640] - * Cu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2640[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * cuneate nucleus (Burdach) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:767] - * cuneate nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:767] - * nucleus cuneatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneate_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cuneatus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:767[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus restiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:767[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * burdachs nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2640 ] + * cuneate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2640 ] + * Cu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2640, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * cuneate nucleus (Burdach) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:767 ] + * cuneate nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:767 ] + * nucleus cuneatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneate_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cuneatus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:767, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus restiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:767, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,10 +27,10 @@ * FMA:68465 * MA:0001035 * NIF_GrossAnatomy:birnlex_2640 - * NeuroNames:767 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2640] + * NeuroNames:767 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2640 ] * SCTID:369072005 - * UMLS:C0228548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cuneate_Nucleus] - * UMLS:C0587939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2640] + * UMLS:C0228548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cuneate_Nucleus ] + * UMLS:C0587939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2640 ] * Wikipedia:Cuneate_nucleus * http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002145.md b/md/UBERON/45/UBERON_0002145.md index fe93a7fa60..aa72f47a0b 100644 --- a/md/UBERON/45/UBERON_0002145.md +++ b/md/UBERON/45/UBERON_0002145.md @@ -8,14 +8,14 @@ ## Synonyms * interpeduncular ganglion - * IP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1000[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Interposed nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IP] - * interpedunclear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MTB:379] - * interpeduncular nucleus (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:522] - * interpeduncular nucleus tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000903] - * nucleus interpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:522[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interpeduncularis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:522[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus interpositus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IP] + * IP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1000, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Interposed nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IP ] + * interpedunclear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MTB:379 ] + * interpeduncular nucleus (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:522 ] + * interpeduncular nucleus tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000903 ] + * nucleus interpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:522, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interpeduncularis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:522, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus interpositus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IP ] ## Cross-references @@ -26,9 +26,9 @@ * FMA:72439 * MA:0001069 * NIF_GrossAnatomy:birnlex_1000 - * NeuroNames:522 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1000] + * NeuroNames:522 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1000 ] * TAO:0000903 - * UMLS:C0175398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1000] + * UMLS:C0175398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1000 ] * ZFA:0000903 ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002245.md b/md/UBERON/45/UBERON_0002245.md index 85f892b749..5b9be242dd 100644 --- a/md/UBERON/45/UBERON_0002245.md +++ b/md/UBERON/45/UBERON_0002245.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002245 * *Label* = cerebellar hemisphere - * *Definition* = A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009959[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_hemisphere] + * *Definition* = A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009959, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_hemisphere ] ## Synonyms * cerebellar hemisphere * cerebellum hemisphere + * hemisphere of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76925 ] * hemisphere of cerebellum [H II - H X] - * hemisphere of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76925] - * hemispherium cerebelli [hII-hX] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76925[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebellar hemispheres [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * hemispherium cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_hemisphere[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hemispherium cerebelli [hII-hX] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76925, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebellar hemispheres [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * hemispherium cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_hemisphere, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * NIF_GrossAnatomy:birnlex_1575 * NeuroNames:1214 * SCTID:362411002 - * UMLS:C0228465 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hemisphere_of_the_Cerebellum] + * UMLS:C0228465 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hemisphere_of_the_Cerebellum ] * Wikipedia:Cerebellar_hemisphere * http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png * ncithesaurus:Hemisphere_of_the_Cerebellum @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002345.md b/md/UBERON/45/UBERON_0002345.md index 02f08bf26a..a10b13dc1f 100644 --- a/md/UBERON/45/UBERON_0002345.md +++ b/md/UBERON/45/UBERON_0002345.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002345 * *Label* = descending thoracic aorta - * *Definition* = the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009868] + * *Definition* = the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009868 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002445.md b/md/UBERON/45/UBERON_0002445.md index c5abe0936c..82ace88938 100644 --- a/md/UBERON/45/UBERON_0002445.md +++ b/md/UBERON/45/UBERON_0002445.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002445 * *Label* = ulnare - * *Definition* = The postaxial bone of the proximal carpal region. Found in close approximation to the ulna, often in articulation[PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = The postaxial bone of the proximal carpal region. Found in close approximation to the ulna, often in articulation[PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = note this bone is termed the triquetral bone in some mammalian taxa, notably humans ## Synonyms * cuneiform bone of hand * cuneiform bone of manus - * os triquetrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23715[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os ulnare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * os triquetrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23715, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os ulnare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * triangular bone - * triquetral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001347[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606] + * triquetral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001347, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606 ] * triquetral bone - * cuneiform of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001347] - * triangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001347] - * triquetrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001347] - * ulnar carpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001347] + * cuneiform of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001347 ] + * triangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001347 ] + * triquetrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001347 ] + * ulnar carpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001347 ] ## Cross-references @@ -26,7 +26,7 @@ * FMA:23715 * MA:0001347 * SCTID:181965000 - * UMLS:C0223739 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Triangular_Bone] + * UMLS:C0223739 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Triangular_Bone ] * Wikipedia:Triquetral * galen:Triquetral * http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [proximal carpal bone](../../UBERON/80/UBERON_0001480.md) and [proximally connected to](../../core#proximally/to/core#proximally_connected_to.md) some [ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002545.md b/md/UBERON/45/UBERON_0002545.md index 651ba74096..7a6bd90863 100644 --- a/md/UBERON/45/UBERON_0002545.md +++ b/md/UBERON/45/UBERON_0002545.md @@ -29,9 +29,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005332 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002545 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_0002645.md b/md/UBERON/45/UBERON_0002645.md index 18bf007505..503624d3ec 100644 --- a/md/UBERON/45/UBERON_0002645.md +++ b/md/UBERON/45/UBERON_0002645.md @@ -6,19 +6,19 @@ ## Synonyms - * nucleus medialis dorsalis paralamellaris (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1255] - * nucleus medialis dorsalis, pars densocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1255] - * MDD [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1255[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * densocellular part of the medial dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:316] - * medial dorsal thalamic nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MDD] + * nucleus medialis dorsalis paralamellaris (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1255 ] + * nucleus medialis dorsalis, pars densocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1255 ] + * MDD [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1255, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * densocellular part of the medial dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:316 ] + * medial dorsal thalamic nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MDD ] ## Cross-references * BAMS:MDD * FMA:62163 * NIF_GrossAnatomy:birnlex_1255 - * NeuroNames:316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1255] - * UMLS:C0262218 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1255] + * NeuroNames:316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1255 ] + * UMLS:C0262218 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1255 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002745.md b/md/UBERON/45/UBERON_0002745.md index 01ac7eb1e1..685a784e26 100644 --- a/md/UBERON/45/UBERON_0002745.md +++ b/md/UBERON/45/UBERON_0002745.md @@ -6,16 +6,16 @@ ## Synonyms - * ventral amygdalofugal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1563] - * tractus amygdalofugalis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:287[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventral amygdalofugal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1563 ] + * tractus amygdalofugalis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:287, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:vaf * FMA:61977 * NIF_GrossAnatomy:birnlex_1563 - * NeuroNames:287 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1563] - * UMLS:C0175242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1563] + * NeuroNames:287 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1563 ] + * UMLS:C0175242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1563 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002845.md b/md/UBERON/45/UBERON_0002845.md index 7c9d20dff3..3dbbb61d75 100644 --- a/md/UBERON/45/UBERON_0002845.md +++ b/md/UBERON/45/UBERON_0002845.md @@ -6,15 +6,15 @@ ## Synonyms - * first thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6321] - * first thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6321] + * first thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6321 ] + * first thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6321 ] ## Cross-references * EMAPA:25174 * FMA:6321 * NIF_GrossAnatomy:birnlex_2611 - * UMLS:C0501699 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2611] + * UMLS:C0501699 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2611 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0002945.md b/md/UBERON/45/UBERON_0002945.md index b6ac3b2aea..010fbb8caa 100644 --- a/md/UBERON/45/UBERON_0002945.md +++ b/md/UBERON/45/UBERON_0002945.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002945 * *Label* = ventral posteromedial nucleus - * *Definition* = The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_posteromedial_nucleus] + * *Definition* = The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_posteromedial_nucleus ] ## Synonyms - * arcuate nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * arcuate nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * arcuate nucleus-3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * nucleus arcuatus thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * nucleus semilunaris thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * nucleus ventralis posterior medialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * nucleus ventralis posteromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * nucleus ventralis posteromedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * nucleus ventrocaudalis anterior internus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * posteromedial ventral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * posteromedial ventral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * semilunar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * thalamic gustatory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * ventral posterior medial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * ventral posterior medial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * ventral posteromedial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62202] - * ventral posteromedial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * ventral posteromedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * ventroposteromedial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_743] - * VPM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_743[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus ventralis posteromedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_posteromedial_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral posterior medial nucleus of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPM] - * ventral posteromedial nucleus of the thalamus principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPM] - * ventral posteromedial nucleus of the thalamus, general [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:347] - * ventral posteromedial nucleus of the thalamus, principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPM] - * ventroposterior medial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPM] + * arcuate nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * arcuate nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * arcuate nucleus-3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * nucleus arcuatus thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * nucleus semilunaris thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * nucleus ventralis posterior medialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * nucleus ventralis posteromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * nucleus ventralis posteromedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * nucleus ventrocaudalis anterior internus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * posteromedial ventral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * posteromedial ventral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * semilunar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * thalamic gustatory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * ventral posterior medial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * ventral posterior medial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * ventral posteromedial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62202 ] + * ventral posteromedial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * ventral posteromedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * ventroposteromedial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_743 ] + * VPM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_743, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus ventralis posteromedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_posteromedial_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral posterior medial nucleus of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPM ] + * ventral posteromedial nucleus of the thalamus principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPM ] + * ventral posteromedial nucleus of the thalamus, general [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:347 ] + * ventral posteromedial nucleus of the thalamus, principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPM ] + * ventroposterior medial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPM ] ## Cross-references @@ -43,9 +43,9 @@ * BM:Die-Th-VPM * FMA:62202 * NIF_GrossAnatomy:birnlex_743 - * NeuroNames:347 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_743] + * NeuroNames:347 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_743 ] * SCTID:369172008 - * UMLS:C0752056 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_743] + * UMLS:C0752056 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_743 ] * Wikipedia:Ventral_posteromedial_nucleus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -68,8 +68,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0003045.md b/md/UBERON/45/UBERON_0003045.md index 1f1139650c..69a635d7ff 100644 --- a/md/UBERON/45/UBERON_0003045.md +++ b/md/UBERON/45/UBERON_0003045.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003045 * *Label* = dorsal longitudinal fasciculus - * *Definition* = The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_longitudinal_fasciculus] + * *Definition* = The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_longitudinal_fasciculus ] ## Synonyms - * bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83845] - * fasciculus longitudinalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83845[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83845] - * posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83845] - * DLF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005266] - * accessory cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] - * dorsal longitudinal fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dlf] - * fasciculus longitudinalis posterior; fasciculus longitudinalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_longitudinal_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus acustici accessorici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cochlearis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cochlearis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral cochlear nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] - * ventral division of cochlear nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:722] + * bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83845 ] + * fasciculus longitudinalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83845, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83845 ] + * posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83845 ] + * DLF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005266 ] + * accessory cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] + * dorsal longitudinal fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dlf ] + * fasciculus longitudinalis posterior; fasciculus longitudinalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_longitudinal_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus acustici accessorici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cochlearis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cochlearis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral cochlear nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] + * ventral division of cochlear nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:722 ] ## Cross-references @@ -27,7 +27,7 @@ * BAMS:dlf * FMA:83845 * NIF_GrossAnatomy:birnlex_986 - * NeuroNames:722 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_986] + * NeuroNames:722 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_986 ] * SCTID:369082006 * Wikipedia:Dorsal_longitudinal_fasciculus * ZFA:0005266 @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0003145.md b/md/UBERON/45/UBERON_0003145.md index bcd9181b66..3c666cb928 100644 --- a/md/UBERON/45/UBERON_0003145.md +++ b/md/UBERON/45/UBERON_0003145.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003018 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000090 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003145 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_0003445.md b/md/UBERON/45/UBERON_0003445.md index 54b0091932..82adf2f845 100644 --- a/md/UBERON/45/UBERON_0003445.md +++ b/md/UBERON/45/UBERON_0003445.md @@ -3,46 +3,46 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003445 * *Label* = pes nerve - * *Definition* = A nerve that is part of a foot [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a foot [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * autopod of hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000653] - * hind limb autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autopod of hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000653 ] + * hind limb autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -58,15 +58,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0003545.md b/md/UBERON/45/UBERON_0003545.md index 7f1fcded07..4149c6efe9 100644 --- a/md/UBERON/45/UBERON_0003545.md +++ b/md/UBERON/45/UBERON_0003545.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = MA:0002741 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003545 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_0003645.md b/md/UBERON/45/UBERON_0003645.md index 29ebae71a2..4c4eab605f 100644 --- a/md/UBERON/45/UBERON_0003645.md +++ b/md/UBERON/45/UBERON_0003645.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003645 * *Label* = metacarpal bone of digit 1 - * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * finger 1 metacarpus - * first digit of hand metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first digit of hand metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * first metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23899] - * hand digit 1 metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 1 metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * first digit of hand metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first digit of hand metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * first metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23899 ] + * hand digit 1 metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 1 metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual digit 1 metacarpus * metacarpal 1 - * metacarpal I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23899] - * metacarpal bone digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001364] - * metacarpal bone of Pollex ; Digitus primus [ I ] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of Pollex ; Digitus primus [ I ] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pollex ; digitus primus [ I ] metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pollex ; digitus primus [ I ] metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thumb metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metacarpal I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23899 ] + * metacarpal bone digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001364 ] + * metacarpal bone of Pollex ; Digitus primus [ I ] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of Pollex ; Digitus primus [ I ] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pollex ; digitus primus [ I ] metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pollex ; digitus primus [ I ] metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thumb metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,7 +37,7 @@ * FMA:23899 * MA:0001364 * SCTID:181973009 - * UMLS:C1708987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone_Digit_1] + * UMLS:C1708987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone_Digit_1 ] * ncithesaurus:Metacarpal_Bone_Digit_1 ## Subsets @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of manual digit 1](../../UBERON/38/UBERON_0004338.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first metacarpal bone or the metacarpal bone of the thumb is the first bone of the thumb. It is connected to the trapezium of the carpus at the first carpometacarpal joint and to the proximal thumb phalanx at the first metacarpophalangeal joint[Wikipedia:First_metacarpal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0003845.md b/md/UBERON/45/UBERON_0003845.md index e285890a64..83d6da9b65 100644 --- a/md/UBERON/45/UBERON_0003845.md +++ b/md/UBERON/45/UBERON_0003845.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003845 * *Label* = lower eyelid epithelium - * *Definition* = An epithelium that is part of a lower eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of inferior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lower eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of inferior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lower eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior eyelid epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior eyelid epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower eyelid epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of inferior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lower eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of inferior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lower eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior eyelid epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior eyelid epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower eyelid epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower eyelid](../../UBERON/13/UBERON_0001713.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0003945.md b/md/UBERON/45/UBERON_0003945.md index c5e9e6576e..febb7220d1 100644 --- a/md/UBERON/45/UBERON_0003945.md +++ b/md/UBERON/45/UBERON_0003945.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003945 * *Label* = somatic motor system - * *Definition* = the neural tissue involved in the transmission of motor signals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001051] + * *Definition* = the neural tissue involved in the transmission of motor signals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001051 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004045.md b/md/UBERON/45/UBERON_0004045.md index 91608cb058..e6f556664f 100644 --- a/md/UBERON/45/UBERON_0004045.md +++ b/md/UBERON/45/UBERON_0004045.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004045 * *Label* = tailgut - * *Definition* = the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008787] + * *Definition* = the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008787 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004145.md b/md/UBERON/45/UBERON_0004145.md index 8cff851d7b..55e5180642 100644 --- a/md/UBERON/45/UBERON_0004145.md +++ b/md/UBERON/45/UBERON_0004145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004145 * *Label* = outflow tract - * *Definition* = The outflow tract is the portion of the heart through which blood flows into the arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003151] + * *Definition* = The outflow tract is the portion of the heart through which blood flows into the arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003151 ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004245.md b/md/UBERON/45/UBERON_0004245.md index b0ad425348..3b7c2cd03f 100644 --- a/md/UBERON/45/UBERON_0004245.md +++ b/md/UBERON/45/UBERON_0004245.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004245 * *Label* = oviduct smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a fallopian tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a fallopian tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fallopian tube involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fallopian tube involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fallopian tube](../../UBERON/89/UBERON_0003889.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004345.md b/md/UBERON/45/UBERON_0004345.md index 0108c95210..3ad84425bb 100644 --- a/md/UBERON/45/UBERON_0004345.md +++ b/md/UBERON/45/UBERON_0004345.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004345 * *Label* = trophectoderm - * *Definition* = outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005028] + * *Definition* = outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005028 ] * *Comment* = Editor notes: distinction between trophectoderm and trophoblast unclear/inconsistent in many sources. AO notes: BTO has this has part of the trophoblast ## Synonyms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the trophoblast develops rapidly so that contact may be made with the maternal uterine tissues when conditions are appropriate. We have here an excellent example of an embryonic adaptation, the development of a structure never present in either adult or embryo of 'lower' vertebrates.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = trophectodermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004445.md b/md/UBERON/45/UBERON_0004445.md index 1a86a122f6..041aacf3e1 100644 --- a/md/UBERON/45/UBERON_0004445.md +++ b/md/UBERON/45/UBERON_0004445.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004445 * *Label* = proximal epiphysis of proximal phalanx of manual digit 1 - * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a proximal phalanx of manual digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal epiphysis of proximal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37490] - * base of proximal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37490] - * proximal epiphysis of proximal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37490[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * basal epiphysis of proximal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37490 ] + * base of proximal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37490 ] + * proximal epiphysis of proximal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37490, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manual digit 1](../../UBERON/38/UBERON_0004338.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004545.md b/md/UBERON/45/UBERON_0004545.md index dd1c2cc131..ee6a7b331d 100644 --- a/md/UBERON/45/UBERON_0004545.md +++ b/md/UBERON/45/UBERON_0004545.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004545 * *Label* = external capsule - * *Definition* = External capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The external capsule is a sheet-like fiber bundle located lateral to the to the putamen and globus pallidus which projects dorsally to the white matter underlying the cerebral cortex[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61959[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_capsule] + * *Definition* = External capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The external capsule is a sheet-like fiber bundle located lateral to the to the putamen and globus pallidus which projects dorsally to the white matter underlying the cerebral cortex[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61959, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_capsule ] ## Synonyms - * capsula externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_capsule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus callosum external capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ec] + * capsula externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_capsule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus callosum external capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ec ] ## Cross-references @@ -19,7 +19,7 @@ * NIF_GrossAnatomy:nlx_anat_1010013 * NeuroNames:253 * SCTID:279300007 - * UMLS:C0152345 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Capsule] + * UMLS:C0152345 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Capsule ] * Wikipedia:External_capsule * http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004545 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004645.md b/md/UBERON/45/UBERON_0004645.md index 9a66eb1271..3f3516986c 100644 --- a/md/UBERON/45/UBERON_0004645.md +++ b/md/UBERON/45/UBERON_0004645.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004645 * *Label* = urinary bladder urothelium - * *Definition* = The epithelial lining of the luminal space of the urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000540] + * *Definition* = The epithelial lining of the luminal space of the urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000540 ] ## Synonyms - * bladder transitional cell epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15936] - * transitional epithelium of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15936] - * urinary bladder transitional epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15936] - * urothelium of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15936] - * urothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001245] - * transitional epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001693] + * bladder transitional cell epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15936 ] + * transitional epithelium of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15936 ] + * urinary bladder transitional epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15936 ] + * urothelium of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15936 ] + * urothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001245 ] + * transitional epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001693 ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:15936 * MA:0001693 * SCTID:25631003 - * UMLS:C0225339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transitional_Epithelium] + * UMLS:C0225339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transitional_Epithelium ] * ncithesaurus:Transitional_Epithelium ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [urothelium](../../UBERON/65/UBERON_0000365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004745.md b/md/UBERON/45/UBERON_0004745.md index a94c6b0d0d..6aa695b92c 100644 --- a/md/UBERON/45/UBERON_0004745.md +++ b/md/UBERON/45/UBERON_0004745.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004745 * *Label* = parasphenoid - * *Definition* = a tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/braincase/sphenethmoid.html] + * *Definition* = a tooth- or denticle-covered plate which is attached to the sphenoid stem[Palaeos]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/braincase/sphenethmoid.html ] ## Synonyms - * keilbein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000385] - * os parasphenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000385] - * os sphenoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000385] - * parabasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000385] + * keilbein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000385 ] + * os parasphenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000385 ] + * os sphenoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000385 ] + * parabasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000385 ] ## Cross-references @@ -30,7 +30,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [sphenoid region](../../UBERON/11/UBERON_0003111.md) * [part_of](../../BFO/50/BFO_0000050.md) some [olfactory region](../../UBERON/12/UBERON_0003112.md) * [part_of](../../BFO/50/BFO_0000050.md) some [palatal part of dermatocranium](../../UBERON/72/UBERON_0012072.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Equivalencies @@ -45,8 +45,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps parasphenoid-basioccipital joint (TAO:0001832)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps parasphenoid-pterosphenoid joint (TAO:0002217)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0004945.md b/md/UBERON/45/UBERON_0004945.md index bfcbc8d40e..413bbd54e6 100644 --- a/md/UBERON/45/UBERON_0004945.md +++ b/md/UBERON/45/UBERON_0004945.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004945 * *Label* = submucosa of neck of urinary bladder - * *Definition* = A submucosa that is part of a neck of urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a neck of urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bladder neck submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck of urinary bladder submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of neck of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of urinary bladder neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of vesical neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder neck submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vesical neck submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder neck submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck of urinary bladder submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of neck of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of urinary bladder neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of vesical neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder neck submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vesical neck submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neck of urinary bladder](../../UBERON/58/UBERON_0001258.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005045.md b/md/UBERON/45/UBERON_0005045.md index f9682b39ed..98936c7972 100644 --- a/md/UBERON/45/UBERON_0005045.md +++ b/md/UBERON/45/UBERON_0005045.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005045 * *Label* = mucosa of ethmoidal sinus - * *Definition* = A mucosa that is part of a ethmoid sinus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a ethmoid sinus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ethmoid sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ethmoid sinus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ethmoid sinus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ethmoid sinus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ethmoidal sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59776] - * mucosa of ethmoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ethmoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ethmoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ethmoid sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ethmoid sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ethmoid sinus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ethmoid sinus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ethmoid sinus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ethmoidal sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59776 ] + * mucosa of ethmoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ethmoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ethmoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ethmoid sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [ethmoid sinus](../../UBERON/53/UBERON_0002453.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005145.md b/md/UBERON/45/UBERON_0005145.md index 86868fc686..0c679560f7 100644 --- a/md/UBERON/45/UBERON_0005145.md +++ b/md/UBERON/45/UBERON_0005145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005145 * *Label* = metanephric comma-shaped body - * *Definition* = The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072278] + * *Definition* = The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072278 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [comma-shaped body](../../UBERON/98/UBERON_0004198.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005245.md b/md/UBERON/45/UBERON_0005245.md index a4bb128d75..f4c8034a30 100644 --- a/md/UBERON/45/UBERON_0005245.md +++ b/md/UBERON/45/UBERON_0005245.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005245 * *Label* = lobar bronchus of right lung caudal lobe - * *Definition* = A lobar bronchus that is part of a lower lobe of right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a lower lobe of right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lobar bronchus of caudal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17987] + * lobar bronchus of caudal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17987 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of right lung](../../UBERON/71/UBERON_0002171.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005345.md b/md/UBERON/45/UBERON_0005345.md index d6c6a98682..d1c77cb5df 100644 --- a/md/UBERON/45/UBERON_0005345.md +++ b/md/UBERON/45/UBERON_0005345.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005345 * *Label* = cerebellum vermis lobule VIIa - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009998] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009998 ] ## Synonyms - * vermic lobule VIIA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081231] + * vermic lobule VIIA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081231 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005445.md b/md/UBERON/45/UBERON_0005445.md index 47602de817..f9e2b2c4ca 100644 --- a/md/UBERON/45/UBERON_0005445.md +++ b/md/UBERON/45/UBERON_0005445.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005445 * *Label* = segment of pes - * *Definition* = A segment of autopod that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A segment of autopod that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24993] - * regio pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24993[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * segment of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24993] - * subdivision of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24993] - * foot region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24993] + * foot subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24993 ] + * regio pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24993, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * segment of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24993 ] + * subdivision of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24993 ] + * foot region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24993 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [segment of autopod](../../UBERON/39/UBERON_0012139.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005645.md b/md/UBERON/45/UBERON_0005645.md index 5d6a01c871..ed5ea735f7 100644 --- a/md/UBERON/45/UBERON_0005645.md +++ b/md/UBERON/45/UBERON_0005645.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005645 * *Label* = manual digit 2 epithelium - * *Definition* = An epithelium that is part of a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 2 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 2 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005745.md b/md/UBERON/45/UBERON_0005745.md index 500684d46d..b27d7c1273 100644 --- a/md/UBERON/45/UBERON_0005745.md +++ b/md/UBERON/45/UBERON_0005745.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005745 * *Label* = optic canal - * *Definition* = The short canal through the orbitosphenoid bone at the apex of the orbit that gives passage to the optic nerve and the opthalmic artery[MP]. The optic foramen is the opening to the optic canal. The superior surface of the sphenoid bone is bounded behind by a ridge, which forms the anterior border of a narrow, transverse groove, the chiasmatic groove (optic groove), above and behind which lies the optic chiasma; the groove ends on either side in the optic foramen, which transmits the optic nerve and ophthalmic artery (with accompanying sympathetic nerve fibres) into the orbital cavity. The left and right optic canals are 25mm apart posteriorly and 30mm apart anteriorly. They are funnel-shaped (narrowest anteriorly). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-683-40008-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010704[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_canal] + * *Definition* = The short canal through the orbitosphenoid bone at the apex of the orbit that gives passage to the optic nerve and the opthalmic artery[MP]. The optic foramen is the opening to the optic canal. The superior surface of the sphenoid bone is bounded behind by a ridge, which forms the anterior border of a narrow, transverse groove, the chiasmatic groove (optic groove), above and behind which lies the optic chiasma; the groove ends on either side in the optic foramen, which transmits the optic nerve and ophthalmic artery (with accompanying sympathetic nerve fibres) into the orbital cavity. The left and right optic canals are 25mm apart posteriorly and 30mm apart anteriorly. They are funnel-shaped (narrowest anteriorly). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-683-40008-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010704, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_canal ] ## Synonyms - * optic nerve foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002025] - * canalis opticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen opticum ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * optic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_canal] + * optic nerve foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002025 ] + * canalis opticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen opticum ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * optic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_canal ] ## Cross-references @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An aperture in the root of the lesser wing of the sphenoid bone transmitting the optic nerve. [TFD][VHOG] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II).[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005845.md b/md/UBERON/45/UBERON_0005845.md index ed936406c1..da841d21fb 100644 --- a/md/UBERON/45/UBERON_0005845.md +++ b/md/UBERON/45/UBERON_0005845.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005845 * *Label* = caudal segment of spinal cord - * *Definition* = A spinal cord segment that adjacent_to a caudal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A spinal cord segment that adjacent_to a caudal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = for spinal cord segments, we treat coccygeal/caudal as synonyms - we only differentiate where bone is concerned ## Synonyms - * coccygeal segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256635] - * coccygeal segments of spinal cord [1-3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256635] - * segmenta coccygea medullae spinalis [1-3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256635[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coccygeal segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256635 ] + * coccygeal segments of spinal cord [1-3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256635 ] + * segmenta coccygea medullae spinalis [1-3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256635, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [caudal region](../../UBERON/71/UBERON_0006071.md) and [spinal cord segment](../../UBERON/44/UBERON_0005844.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0005945.md b/md/UBERON/45/UBERON_0005945.md index 392972ec1e..23c398a0cf 100644 --- a/md/UBERON/45/UBERON_0005945.md +++ b/md/UBERON/45/UBERON_0005945.md @@ -6,9 +6,9 @@ ## Synonyms - * neurocranial trabeculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001321[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001321[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * trabecular cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001321] + * neurocranial trabeculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001321, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001321, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * trabecular cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001321 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006145.md b/md/UBERON/45/UBERON_0006145.md index 4a6aa80c34..c348b38c5e 100644 --- a/md/UBERON/45/UBERON_0006145.md +++ b/md/UBERON/45/UBERON_0006145.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006145 * *Label* = dorsal digital artery of pes - * *Definition* = The dorsal digital arteries of foot are small arteries which supply the toes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries_of_foot] + * *Definition* = The dorsal digital arteries of foot are small arteries which supply the toes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries_of_foot ] ## Synonyms - * dorsal digital artery of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44660] - * arteriae digitales dorsales pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries_of_foot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal digital artery of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44660 ] + * arteriae digitales dorsales pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries_of_foot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal digital artery](../../UBERON/63/UBERON_0006163.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006245.md b/md/UBERON/45/UBERON_0006245.md index b9d86b25f0..5d83ed0df4 100644 --- a/md/UBERON/45/UBERON_0006245.md +++ b/md/UBERON/45/UBERON_0006245.md @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [humerus endochondral element](../../UBERON/53/UBERON_0015053.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006345.md b/md/UBERON/45/UBERON_0006345.md index 13cd122754..8646ca8550 100644 --- a/md/UBERON/45/UBERON_0006345.md +++ b/md/UBERON/45/UBERON_0006345.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006345 * *Label* = stapedial artery - * *Definition* = A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004665] + * *Definition* = A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004665 ] ## Synonyms - * stapedial artery temporary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001908] - * stapedial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001908] + * stapedial artery temporary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001908 ] + * stapedial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001908 ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:17313 * MA:0002044 * SCTID:361518009 - * UMLS:C1284048 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stapedial_Artery] + * UMLS:C1284048 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stapedial_Artery ] * ncithesaurus:Stapedial_Artery ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006445.md b/md/UBERON/45/UBERON_0006445.md index db3f8228e8..8770393d32 100644 --- a/md/UBERON/45/UBERON_0006445.md +++ b/md/UBERON/45/UBERON_0006445.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006445 * *Label* = caudal middle frontal gyrus - * *Definition* = Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1083] + * *Definition* = Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1083 ] ## Synonyms - * caudal middle frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1083] - * posterior part of middle frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70688] + * caudal middle frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1083 ] + * posterior part of middle frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70688 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006645.md b/md/UBERON/45/UBERON_0006645.md index 531b6d0d13..5853fa7877 100644 --- a/md/UBERON/45/UBERON_0006645.md +++ b/md/UBERON/45/UBERON_0006645.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006645 * *Label* = adventitia of epididymis - * *Definition* = An adventitia that is part of a epididymis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adventitia that is part of a epididymis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epididymis adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19136] + * epididymis adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19136 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adventitia](../../UBERON/42/UBERON_0005742.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0006845.md b/md/UBERON/45/UBERON_0006845.md index 082eecdc63..56c51f37a5 100644 --- a/md/UBERON/45/UBERON_0006845.md +++ b/md/UBERON/45/UBERON_0006845.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006845 * *Label* = abductor muscle - * *Definition* = A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005269] + * *Definition* = A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005269 ] * *Comment* = note that in FMA the Adbuctor muscle is a subclass of Relation. It's unclear what this actually means, we leave it here as a grouping for now ## Synonyms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A muscle that moves a body part away from the sagittal plane of the body.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass cranial muscle (TAO:0001953)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0007145.md b/md/UBERON/45/UBERON_0007145.md index 3abb7353dc..73030b5d2f 100644 --- a/md/UBERON/45/UBERON_0007145.md +++ b/md/UBERON/45/UBERON_0007145.md @@ -6,7 +6,7 @@ ## Synonyms - * diaphragm dome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13332] + * diaphragm dome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13332 ] ## Cross-references @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0007245.md b/md/UBERON/45/UBERON_0007245.md index fdd9bb046e..26a21f4dfe 100644 --- a/md/UBERON/45/UBERON_0007245.md +++ b/md/UBERON/45/UBERON_0007245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007245 * *Label* = nuclear complex of neuraxis - * *Definition* = Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84059[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84059, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] * *Comment* = todo - move existing complex classes currently under nucleus to be under this class ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0007645.md b/md/UBERON/45/UBERON_0007645.md index 01d5d78aee..afde46195c 100644 --- a/md/UBERON/45/UBERON_0007645.md +++ b/md/UBERON/45/UBERON_0007645.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007645 * *Label* = future meninx - * *Definition* = A developing anatomical structure that is the outermost mesenchymal covering of the developing brain and spinal cord and is the precursor of the meningeal cluster. In mammals this gives rise to the arachnoid mater, pia mater and dura mater. In cyclostomes and fishes, the future meninx gives rise to a single meningeal layer, the primitive meninx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A developing anatomical structure that is the outermost mesenchymal covering of the developing brain and spinal cord and is the precursor of the meningeal cluster. In mammals this gives rise to the arachnoid mater, pia mater and dura mater. In cyclostomes and fishes, the future meninx gives rise to a single meningeal layer, the primitive meninx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = The zebrafish primitive meninx develops from neural crest[UBERONREF:0000002]. In EHDAA2 the meninges are divided by layer and location, each has differing developmental origins - mesenchyme from mesoderm/endoderm, mesenchyme from NC ## Synonyms - * primary meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004453] - * meninx primitiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009726] + * primary meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004453 ] + * meninx primitiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009726 ] * primitive meninx * primordial meninx @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed[MP:0009726]d * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004065 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0007845.md b/md/UBERON/45/UBERON_0007845.md index 00b00c62cc..cc83deffd7 100644 --- a/md/UBERON/45/UBERON_0007845.md +++ b/md/UBERON/45/UBERON_0007845.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007845 * *Label* = regular connective tissue - * *Definition* = Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular connective tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20103] + * *Definition* = Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular connective tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20103 ] * *Comment* = Editor notes: the connective tissue hierarchy largely follows FMA with definitions from VSAO. Note that in FMA, loose-CT is irregular-CT. This means regular-CT is necessarily equivalent to dense-regular-CT (assuming a JEPD classification). ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0008245.md b/md/UBERON/45/UBERON_0008245.md index c5bea5559e..1fb262e6a7 100644 --- a/md/UBERON/45/UBERON_0008245.md +++ b/md/UBERON/45/UBERON_0008245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008245 * *Label* = pennate muscle - * *Definition* = A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the manus. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pennate_muscle] + * *Definition* = A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the manus. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pennate_muscle ] * *Comment* = note the FMA class does not denote a muscle organ. todo: add child classes ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0008345.md b/md/UBERON/45/UBERON_0008345.md index d483c485bd..712928f3fe 100644 --- a/md/UBERON/45/UBERON_0008345.md +++ b/md/UBERON/45/UBERON_0008345.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008345 * *Label* = ileal epithelium - * *Definition* = An epithelium that is part of a ileum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a ileum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17233] + * epithelium of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17233 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0008445.md b/md/UBERON/45/UBERON_0008445.md index c3fcc2b5bc..3630755be8 100644 --- a/md/UBERON/45/UBERON_0008445.md +++ b/md/UBERON/45/UBERON_0008445.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008445 * *Label* = webbed pedal digit - * *Definition* = A digit that is part of a webbed pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digit that is part of a webbed pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of webbed foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of webbed pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * webbed toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digit of webbed foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of webbed pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * webbed toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit](../../UBERON/44/UBERON_0002544.md) and [part_of](../../BFO/50/BFO_0000050.md) some [webbed pes](../../UBERON/42/UBERON_0008442.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0008845.md b/md/UBERON/45/UBERON_0008845.md index 9c8a574455..cb83e077d7 100644 --- a/md/UBERON/45/UBERON_0008845.md +++ b/md/UBERON/45/UBERON_0008845.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008845 * *Label* = nonskeletal ligament - * *Definition* = A ligament that does not connect two skeletal elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A ligament that does not connect two skeletal elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * non-skeletal ligament - * fibrous ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligament] + * fibrous ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligament ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament[FMA:25625]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0008945.md b/md/UBERON/45/UBERON_0008945.md index 5c5d5470e3..00dab2c0c5 100644 --- a/md/UBERON/45/UBERON_0008945.md +++ b/md/UBERON/45/UBERON_0008945.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008945 * *Label* = extraembryonic endoderm - * *Definition* = An extraembryonic epithelium that is formed by the delaminated cells of the primitive endoderm (hypoblast) that goes on to form the yolk sac. In mammals, as in avians, these cells do not produce any part of the newborn organism (i.e. they are extraembryonic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An extraembryonic epithelium that is formed by the delaminated cells of the primitive endoderm (hypoblast) that goes on to form the yolk sac. In mammals, as in avians, these cells do not produce any part of the newborn organism (i.e. they are extraembryonic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = The origin of extraembryonic endoderm is a highly controversial issue // forms the yolk sac (Gilbert) ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0009145.md b/md/UBERON/45/UBERON_0009145.md index 1054f71a20..a2dd592a67 100644 --- a/md/UBERON/45/UBERON_0009145.md +++ b/md/UBERON/45/UBERON_0009145.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0009645.md b/md/UBERON/45/UBERON_0009645.md index 34bee585ee..00947f16ae 100644 --- a/md/UBERON/45/UBERON_0009645.md +++ b/md/UBERON/45/UBERON_0009645.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009645 * *Label* = ampullary gland - * *Definition* = fusiform enlargement of the deferent duct, as it passes across the bladder wall, due to proliferation of glandular tissue in the regionally folded mucosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/ampullary+gland] + * *Definition* = fusiform enlargement of the deferent duct, as it passes across the bladder wall, due to proliferation of glandular tissue in the regionally folded mucosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/ampullary+gland ] * *Comment* = Ampullary glands are situated in an ampulla-like enlargement of the seminal duct, or embedded in the latter; they are present, eg in the Shrew, Ruminants, and certain Carnivores and Rodents. (Wiedersheim et al., 1907)[MorphoBank] ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references * MA:0000400 - * UMLS:C2698103 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ampullary_Gland] + * UMLS:C2698103 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ampullary_Gland ] * ncithesaurus:Ampullary_Gland ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0009745.md b/md/UBERON/45/UBERON_0009745.md index a30ff13ab0..eb56079a99 100644 --- a/md/UBERON/45/UBERON_0009745.md +++ b/md/UBERON/45/UBERON_0009745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009745 * *Label* = lymph node medullary cord - * *Definition* = the dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011224] + * *Definition* = the dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011224 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0009845.md b/md/UBERON/45/UBERON_0009845.md index d89fce3e08..18ce69eac1 100644 --- a/md/UBERON/45/UBERON_0009845.md +++ b/md/UBERON/45/UBERON_0009845.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009845 * *Label* = urogenital sinus mesenchyme - * *Definition* = Mesenchyme that surrounds primitive urogenital sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that surrounds primitive urogenital sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth ## Synonyms - * UGM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * UGM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [surrounds](../../RO/21/RO_0002221.md) some [primitive urogenital sinus](../../UBERON/64/UBERON_0000164.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010045.md b/md/UBERON/45/UBERON_0010045.md index 3a47b6bf4d..f2704b6626 100644 --- a/md/UBERON/45/UBERON_0010045.md +++ b/md/UBERON/45/UBERON_0010045.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010045 * *Label* = 1st arch maxillary mesenchyme - * *Definition* = Mesenchyme that is part of a 1st arch maxillary component. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a 1st arch maxillary component. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of maxillary component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16391] + * mesenchyme of maxillary component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16391 ] * maxillary component mesenchyme * maxillary mesenchyme @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch maxillary component](../../UBERON/38/UBERON_0007238.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010145.md b/md/UBERON/45/UBERON_0010145.md index f7ad2c569f..bf4ec4e597 100644 --- a/md/UBERON/45/UBERON_0010145.md +++ b/md/UBERON/45/UBERON_0010145.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010145 * *Label* = paraurethral gland - * *Definition* = In human anatomy (female), the Skene's glands (also known as the lesser vestibular glands, periurethral glands, skene glands, paraurethral glands, U-spot, or female prostate) are glands located on the anterior wall of the vagina, around the lower end of the urethra. They drain into the urethra and near the urethral opening. These glands are surrounded with tissue, which includes the part of the clitoris that reaches up inside the vagina and swells with blood during sexual arousal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_gland] + * *Definition* = In human anatomy (female), the Skene's glands (also known as the lesser vestibular glands, periurethral glands, skene glands, paraurethral glands, U-spot, or female prostate) are glands located on the anterior wall of the vagina, around the lower end of the urethra. They drain into the urethra and near the urethral opening. These glands are surrounded with tissue, which includes the part of the clitoris that reaches up inside the vagina and swells with blood during sexual arousal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_gland ] * *Comment* = AO notes: in MP female urethral gland, Skene gland and paraurethral gland are exact syns. Note that NCITA seems to use the term in a more generic way, as a parent for skene gland, cowper gland (which may be the same as the male bulbo-urethral gland) ## Synonyms * Skene gland - * Skene's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20083] - * female prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10668204[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_gland] - * para-urethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20083] - * periurethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_gland] - * U-spot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_gland] - * female urethral gland [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * glandulae vestibulares minores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Skene's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20083 ] + * female prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10668204, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_gland ] + * para-urethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20083 ] + * periurethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_gland ] + * U-spot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_gland ] + * female urethral gland [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * glandulae vestibulares minores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20083 * SCTID:264125007 - * UMLS:C0221315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paraurethral_Gland] + * UMLS:C0221315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paraurethral_Gland ] * Wikipedia:Skene%27s_gland * http://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg * ncithesaurus:Paraurethral_Gland @@ -43,8 +43,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0002367 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010245.md b/md/UBERON/45/UBERON_0010245.md index 64a7356192..9f5882adb3 100644 --- a/md/UBERON/45/UBERON_0010245.md +++ b/md/UBERON/45/UBERON_0010245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010245 * *Label* = retinal tapetum lucidum - * *Definition* = A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum#Classification[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A tapetum lucidum that is part of the retina, within the cytoplasm of the retinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum#Classification, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: as seen in teleosts, crocodiles, marsupials and fruit bats[WP] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [retina](../../UBERON/66/UBERON_0000966.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_32443 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8493 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9263 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010345.md b/md/UBERON/45/UBERON_0010345.md index 844732325d..7d1119228c 100644 --- a/md/UBERON/45/UBERON_0010345.md +++ b/md/UBERON/45/UBERON_0010345.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010345 * *Label* = 4th arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 4th arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * head mesenchyme derived arch 4 mesenchyme - * mesenchyme derived from head mesoderm of mesenchyme of 4th arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16771] + * mesenchyme derived from head mesoderm of mesenchyme of 4th arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16771 ] * pharyngeal arch 4 mesenchyme from head mesenchyme * branchial arch 4 mesenchyme from head mesenchyme @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [4th arch mesenchyme](../../UBERON/91/UBERON_0005691.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010545.md b/md/UBERON/45/UBERON_0010545.md index f57af403cc..1fa48442fd 100644 --- a/md/UBERON/45/UBERON_0010545.md +++ b/md/UBERON/45/UBERON_0010545.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010545 * *Label* = metatarsus skeleton - * *Definition* = Limb segment that consists of the long bones of the pes. The metatarsals are analogous to the metacarpal bones of the manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsus] + * *Definition* = Limb segment that consists of the long bones of the pes. The metatarsals are analogous to the metacarpal bones of the manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsus ] ## Synonyms - * metatarsal bones set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71340] + * metatarsal bones set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71340 ] * metatarsal skeleton - * metatarsals [I-V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71340] + * metatarsals [I-V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71340 ] * posterior metapodial skeleton - * set of metatarsal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71340] - * set of metatarsals [I-V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71340] + * set of metatarsal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71340 ] + * set of metatarsals [I-V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71340 ] * skeleton of metatarsus * metatarsalia - * ossa metatarsalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005027[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * ossa metatarsalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005027, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [metatarsus region](../../UBERON/83/UBERON_0000983.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the leg corresponding to the metatarsus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010545 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010745.md b/md/UBERON/45/UBERON_0010745.md index dfb3396a97..2dd48c6408 100644 --- a/md/UBERON/45/UBERON_0010745.md +++ b/md/UBERON/45/UBERON_0010745.md @@ -7,7 +7,7 @@ ## Synonyms * sacral vertebral cartilage condensation - * sacral vertebral cartilage condensation group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001773] + * sacral vertebral cartilage condensation group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001773 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [sacral vertebra endochondral element](../../UBERON/10/UBERON_0015010.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0010945.md b/md/UBERON/45/UBERON_0010945.md index 45d5a4a417..e023677802 100644 --- a/md/UBERON/45/UBERON_0010945.md +++ b/md/UBERON/45/UBERON_0010945.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010945 * *Label* = jugulohyoideus muscle - * *Definition* = runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:7839797] + * *Definition* = runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:7839797 ] * *Comment* = See also: stylohyoid muscle ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011145.md b/md/UBERON/45/UBERON_0011145.md index 7f6149b626..de66a2fd1f 100644 --- a/md/UBERON/45/UBERON_0011145.md +++ b/md/UBERON/45/UBERON_0011145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011145 * *Label* = adductor muscle - * *Definition* = A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adduction[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_muscle] + * *Definition* = A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adduction, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_muscle ] * *Comment* = we place the TAO class here even though it is a cranial muscle; it is defined functionally ## Synonyms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A muscle that brings a body part closer to the sagittal plane of the body.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass cranial muscle (TAO:0001953)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011245.md b/md/UBERON/45/UBERON_0011245.md index 7eabc4ad71..85cfc03a17 100644 --- a/md/UBERON/45/UBERON_0011245.md +++ b/md/UBERON/45/UBERON_0011245.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011245 * *Label* = infra-orbital canal of maxilla - * *Definition* = One of the canals of the orbital surface of the maxilla, the infraorbital canal, opens just below the margin of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraorbital_canal] + * *Definition* = One of the canals of the orbital surface of the maxilla, the infraorbital canal, opens just below the margin of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraorbital_canal ] ## Synonyms - * canalis infra-orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59048[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * canalis infraorbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59048[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * infra-orbital canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59048] - * infraorbital canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraorbital_canal] + * canalis infra-orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59048, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * canalis infraorbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59048, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * infra-orbital canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59048 ] + * infraorbital canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraorbital_canal ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011345.md b/md/UBERON/45/UBERON_0011345.md index 8cba3bd39e..297c8096bf 100644 --- a/md/UBERON/45/UBERON_0011345.md +++ b/md/UBERON/45/UBERON_0011345.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011345 * *Label* = pharyngeal raphe - * *Definition* = The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_raphe] + * *Definition* = The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_raphe ] * *Comment* = AO notes: isa anatomical line in FMA ## Synonyms - * raphe pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_raphe] + * raphe pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_raphe ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011345 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011645.md b/md/UBERON/45/UBERON_0011645.md index 44207fd063..e4df204a26 100644 --- a/md/UBERON/45/UBERON_0011645.md +++ b/md/UBERON/45/UBERON_0011645.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011645 * *Label* = iliofemoralis muscle - * *Definition* = Limb extensor that runs from ilium to femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Limb extensor that runs from ilium to femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has muscle insertion](../../RO/73/RO_0002373.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [has muscle origin](../../RO/72/RO_0002372.md) some [ilium](../../UBERON/73/UBERON_0001273.md) and [muscle of pelvis](../../UBERON/25/UBERON_0001325.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011745.md b/md/UBERON/45/UBERON_0011745.md index 353344228a..7f912bca68 100644 --- a/md/UBERON/45/UBERON_0011745.md +++ b/md/UBERON/45/UBERON_0011745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011745 * *Label* = pulmonary valve leaflets - * *Definition* = A cardiac valve leaflet that is part of a pulmonary valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac valve leaflet that is part of a pulmonary valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac valve leaflet](../../UBERON/41/UBERON_0011741.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary valve](../../UBERON/46/UBERON_0002146.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011845.md b/md/UBERON/45/UBERON_0011845.md index 027d1f9667..cf1ccfb437 100644 --- a/md/UBERON/45/UBERON_0011845.md +++ b/md/UBERON/45/UBERON_0011845.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011845 * *Label* = duct of sebaceous gland - * *Definition* = A duct that is part of a sebaceous gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a sebaceous gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sebaceous gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70947] + * sebaceous gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70947 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011845 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0011945.md b/md/UBERON/45/UBERON_0011945.md index c8ff4420c3..f7dde98764 100644 --- a/md/UBERON/45/UBERON_0011945.md +++ b/md/UBERON/45/UBERON_0011945.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011945 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0012245.md b/md/UBERON/45/UBERON_0012245.md index c603b87d8c..6c7d379d79 100644 --- a/md/UBERON/45/UBERON_0012245.md +++ b/md/UBERON/45/UBERON_0012245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012245 * *Label* = silk - * *Definition* = A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Silk] + * *Definition* = A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Silk ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0012645.md b/md/UBERON/45/UBERON_0012645.md index b107cf917b..a28191da5b 100644 --- a/md/UBERON/45/UBERON_0012645.md +++ b/md/UBERON/45/UBERON_0012645.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013145.md b/md/UBERON/45/UBERON_0013145.md index 5b29441fec..6a226e76fd 100644 --- a/md/UBERON/45/UBERON_0013145.md +++ b/md/UBERON/45/UBERON_0013145.md @@ -6,7 +6,7 @@ ## Synonyms - * posteromedial vein of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44320] + * posteromedial vein of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44320 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013145 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013245.md b/md/UBERON/45/UBERON_0013245.md index ca33d87ea0..b3b2363b81 100644 --- a/md/UBERON/45/UBERON_0013245.md +++ b/md/UBERON/45/UBERON_0013245.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013245 * *Label* = sinovaginal bulb - * *Definition* = solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = solid evaginations of the UG sinus that develops into a vaginal plate that which will will eventually canalize to form the inferior portion of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms ## Cross-references - * UMLS:C1519330 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sinovaginal_Bulb] + * UMLS:C1519330 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sinovaginal_Bulb ] * ncithesaurus:Sinovaginal_Bulb ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013245 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013445.md b/md/UBERON/45/UBERON_0013445.md index e241ab963a..4e55f6b3d9 100644 --- a/md/UBERON/45/UBERON_0013445.md +++ b/md/UBERON/45/UBERON_0013445.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013445 * *Label* = pterygomaxillary fissure - * *Definition* = The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygomaxillary_fissure] + * *Definition* = The pterygomaxillary fissure is a fissure of the human skull. It is vertical, and descends at right angles from the medial end of the inferior orbital fissure; it is a triangular interval, formed by the divergence of the maxilla from the pterygoid process of the sphenoid. It connects the infratemporal with the pterygopalatine fossa, and transmits the terminal part of the maxillary artery. Alveolar branches of the maxillary nerve go from the pterygopalatine fossa to the infratemporal region via this fissure. In older texts, the pterygomaxillary fissure is sometimes called the pterygopalatine fissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygomaxillary_fissure ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013545.md b/md/UBERON/45/UBERON_0013545.md index 1e0f03b58d..d2b1f91471 100644 --- a/md/UBERON/45/UBERON_0013545.md +++ b/md/UBERON/45/UBERON_0013545.md @@ -6,18 +6,18 @@ ## Synonyms - * B09-14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1745] - * Brodmann (1909) area 14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1745] - * Brodmann area 14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68611] - * area 14 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1745] - * B09-14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1745[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1745 ] + * Brodmann (1909) area 14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1745 ] + * Brodmann area 14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68611 ] + * area 14 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1745 ] + * B09-14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1745, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * FMA:68611 * NIF_GrossAnatomy:birnlex_1745 * NeuroNames:1008 - * OldNeuroNames:2049637081 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1745] + * OldNeuroNames:2049637081 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1745 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013545 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013645.md b/md/UBERON/45/UBERON_0013645.md index c4e4d26a5c..c4e746265f 100644 --- a/md/UBERON/45/UBERON_0013645.md +++ b/md/UBERON/45/UBERON_0013645.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013645 * *Label* = gular gland - * *Definition* = A gland that is part of the gular region (throat) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A gland that is part of the gular region (throat) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gular region](../../UBERON/54/UBERON_0011154.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0013745.md b/md/UBERON/45/UBERON_0013745.md index 915bef3c0d..f88d37fa29 100644 --- a/md/UBERON/45/UBERON_0013745.md +++ b/md/UBERON/45/UBERON_0013745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013745 * *Label* = zona intermedia of adrenal gland - * *Definition* = A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.endotext.org/adrenal/adrenal1/adrenal1.html] + * *Definition* = A zone of the adrenal cortex located between the zona glomerulosa and the zona fasciculata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.endotext.org/adrenal/adrenal1/adrenal1.html ] * *Comment* = currently postulated to be a site of initiation of adrenocyte proliferation and differentiation and a zone containing the adrenal cortical stem cells. Present in some rat species. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013745 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0014445.md b/md/UBERON/45/UBERON_0014445.md index 0712bc16d3..e703f8d8cb 100644 --- a/md/UBERON/45/UBERON_0014445.md +++ b/md/UBERON/45/UBERON_0014445.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014445 * *Label* = acetabular fossa - * *Definition* = The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:100] + * *Definition* = The acetabular fossa is the roughened depression in the centre of the acetabulum, surrounded by the lunate acetabular surface and the acetabular notch. The acetabular fossa provides an insertion point for the teres ligaments that secure the femoral head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:100 ] * *Comment* = It is occupied by the ligament of head of femur[WP] ## Synonyms - * fossa acetabularis (acetabuli) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17269] - * fossa acetabularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fossa acetabuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fossa acetabularis (acetabuli) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17269 ] + * fossa acetabularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fossa acetabuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014445 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0014645.md b/md/UBERON/45/UBERON_0014645.md index 35eb8a901d..dac9ed9999 100644 --- a/md/UBERON/45/UBERON_0014645.md +++ b/md/UBERON/45/UBERON_0014645.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014645 * *Label* = nucleus H - * *Definition* = A nucleus present in the ventral tegmentum of squalomorph sharks. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A nucleus present in the ventral tegmentum of squalomorph sharks. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014645 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_0015045.md b/md/UBERON/45/UBERON_0015045.md index abbff1f7ec..59d6389661 100644 --- a/md/UBERON/45/UBERON_0015045.md +++ b/md/UBERON/45/UBERON_0015045.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015045 * *Label* = manual digit 3 metacarpus endochondral element - * *Definition* = A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 3 metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 3 metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 3 metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 3 metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [manual digit 3 metacarpus cartilage element](../../UBERON/72/UBERON_0010572.md)or[manual digit 3 metacarpus pre-cartilage condensation](../../UBERON/67/UBERON_0010567.md)or[metacarpal bone of digit 3](../../UBERON/47/UBERON_0003647.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015045 + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2000245.md b/md/UBERON/45/UBERON_2000245.md index 84faf888c2..90b6a160fc 100644 --- a/md/UBERON/45/UBERON_2000245.md +++ b/md/UBERON/45/UBERON_2000245.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2000645.md b/md/UBERON/45/UBERON_2000645.md index 90d3b55e34..9d28484aa7 100644 --- a/md/UBERON/45/UBERON_2000645.md +++ b/md/UBERON/45/UBERON_2000645.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2000745.md b/md/UBERON/45/UBERON_2000745.md index 13475cac82..a187e07222 100644 --- a/md/UBERON/45/UBERON_2000745.md +++ b/md/UBERON/45/UBERON_2000745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000745 * *Label* = epaxial region somite 25 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2000845.md b/md/UBERON/45/UBERON_2000845.md index 6bdc8538b8..9b359cb62d 100644 --- a/md/UBERON/45/UBERON_2000845.md +++ b/md/UBERON/45/UBERON_2000845.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000845[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000845, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_2001045.md b/md/UBERON/45/UBERON_2001045.md index ad832e9ea6..33570f53bb 100644 --- a/md/UBERON/45/UBERON_2001045.md +++ b/md/UBERON/45/UBERON_2001045.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001045 * *Label* = sclerotome somite 5 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001145.md b/md/UBERON/45/UBERON_2001145.md index 43623f6fdd..0ab5c1196b 100644 --- a/md/UBERON/45/UBERON_2001145.md +++ b/md/UBERON/45/UBERON_2001145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001145 * *Label* = tooth 3V - * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 3 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001245.md b/md/UBERON/45/UBERON_2001245.md index 8ab6b57ca4..5509196d7b 100644 --- a/md/UBERON/45/UBERON_2001245.md +++ b/md/UBERON/45/UBERON_2001245.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001245 * *Label* = epibranchial 4 bone - * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and medially with pharyngobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone and medially with pharyngobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001545.md b/md/UBERON/45/UBERON_2001545.md index 756babdc71..00d485fe2d 100644 --- a/md/UBERON/45/UBERON_2001545.md +++ b/md/UBERON/45/UBERON_2001545.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001545 * *Label* = sublingual ventral cartilage - * *Definition* = Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001745.md b/md/UBERON/45/UBERON_2001745.md index cb5e5b5bc9..f587b1815c 100644 --- a/md/UBERON/45/UBERON_2001745.md +++ b/md/UBERON/45/UBERON_2001745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001745 * *Label* = premaxilla replacement tooth trench - * *Definition* = Replacement tooth trench that is located in the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Replacement tooth trench that is located in the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001845.md b/md/UBERON/45/UBERON_2001845.md index 7dae404e79..58badfb737 100644 --- a/md/UBERON/45/UBERON_2001845.md +++ b/md/UBERON/45/UBERON_2001845.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001845 * *Label* = dorsal hypohyal-ventral hypohyal joint - * *Definition* = Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [dorsal hypohyal bone](../../UBERON/96/UBERON_2000196.md) and [core#connects](../../ts/core#connects.md) some [ventral hypohyal bone](../../UBERON/00/UBERON_2000300.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2001945.md b/md/UBERON/45/UBERON_2001945.md index 1bb0330ddc..b1e5267738 100644 --- a/md/UBERON/45/UBERON_2001945.md +++ b/md/UBERON/45/UBERON_2001945.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001945 * *Label* = mesethmoid-premaxillary ligament - * *Definition* = Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2002145.md b/md/UBERON/45/UBERON_2002145.md index 2c93837ab0..7513285066 100644 --- a/md/UBERON/45/UBERON_2002145.md +++ b/md/UBERON/45/UBERON_2002145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002145 * *Label* = anterior swim bladder bud - * *Definition* = Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:090511-18] + * *Definition* = Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:090511-18 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2005245.md b/md/UBERON/45/UBERON_2005245.md index 8aaaf45bb6..06f1e17c88 100644 --- a/md/UBERON/45/UBERON_2005245.md +++ b/md/UBERON/45/UBERON_2005245.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005245 * *Label* = inter-parietal joint - * *Definition* = Fibrous joint connecting the parietal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:ZDB-PUB-060323-12] + * *Definition* = Fibrous joint connecting the parietal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:ZDB-PUB-060323-12 ] ## Synonyms - * sagittal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005245] + * sagittal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005245 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = wasila.dahdul * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-02-10T04:18:40Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_2007045.md b/md/UBERON/45/UBERON_2007045.md index 3e1a752922..1e8959af40 100644 --- a/md/UBERON/45/UBERON_2007045.md +++ b/md/UBERON/45/UBERON_2007045.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3000645.md b/md/UBERON/45/UBERON_3000645.md index dd5abe8507..cde33c873c 100644 --- a/md/UBERON/45/UBERON_3000645.md +++ b/md/UBERON/45/UBERON_3000645.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000645 * *Label* = corpus - * *Definition* = Basal part of the septomaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Basal part of the septomaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000645] - * pars horizontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000645] + * centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000645 ] + * pars horizontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000645 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010459 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3000745.md b/md/UBERON/45/UBERON_3000745.md index 93f828f932..42d0bf066b 100644 --- a/md/UBERON/45/UBERON_3000745.md +++ b/md/UBERON/45/UBERON_3000745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000745 * *Label* = webbing of bone - * *Definition* = In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_and_Maglia_2008] + * *Definition* = In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_and_Maglia_2008 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3000945.md b/md/UBERON/45/UBERON_3000945.md index 8bc824fd34..cdcb36d281 100644 --- a/md/UBERON/45/UBERON_3000945.md +++ b/md/UBERON/45/UBERON_3000945.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000945 * *Label* = inscriptional rib - * *Definition* = Three pairs of cartilaginous elements posterior to the sternum that lie in the myosepta of the ventral trunk musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Three pairs of cartilaginous elements posterior to the sternum that lie in the myosepta of the ventral trunk musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * abdominal ribs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000945] + * abdominal ribs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000945 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3010045.md b/md/UBERON/45/UBERON_3010045.md index 5127a15e19..cd00fd4708 100644 --- a/md/UBERON/45/UBERON_3010045.md +++ b/md/UBERON/45/UBERON_3010045.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010045 * *Label* = centrale 1 - * *Definition* = Distal-most centrale when two are present. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Distal-most centrale when two are present. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3010145.md b/md/UBERON/45/UBERON_3010145.md index bc7715ba00..1716d28901 100644 --- a/md/UBERON/45/UBERON_3010145.md +++ b/md/UBERON/45/UBERON_3010145.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010145 * *Label* = otic operculum - * *Definition* = Plate of cartilage occluding fenestra ovalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Plate of cartilage occluding fenestra ovalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3010728 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_3010745.md b/md/UBERON/45/UBERON_3010745.md index 5cbff7ba3a..966017c27a 100644 --- a/md/UBERON/45/UBERON_3010745.md +++ b/md/UBERON/45/UBERON_3010745.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010745 * *Label* = M. coccygeosacralis - * *Definition* = Originates on the lateral surface of the urostyle and inserts on the neural arch of the sacrum or on the sacral diapophysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the lateral surface of the urostyle and inserts on the neural arch of the sacrum or on the sacral diapophysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_3011045.md b/md/UBERON/45/UBERON_3011045.md index f487abce0b..d96fad14a5 100644 --- a/md/UBERON/45/UBERON_3011045.md +++ b/md/UBERON/45/UBERON_3011045.md @@ -6,7 +6,7 @@ ## Synonyms - * gasserian ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3011045] + * gasserian ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3011045 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/45/UBERON_4000045.md b/md/UBERON/45/UBERON_4000045.md index 0450c47a6a..d28b4dfd2c 100644 --- a/md/UBERON/45/UBERON_4000045.md +++ b/md/UBERON/45/UBERON_4000045.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000045 * *Label* = obsolete preosteoblast - * *Definition* = Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0007010 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/45/UBERON_4200045.md b/md/UBERON/45/UBERON_4200045.md index e655ccb5a3..2cca923447 100644 --- a/md/UBERON/45/UBERON_4200045.md +++ b/md/UBERON/45/UBERON_4200045.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0000046.md b/md/UBERON/46/UBERON_0000046.md index c8db8e74e0..322c0b4d11 100644 --- a/md/UBERON/46/UBERON_0000046.md +++ b/md/UBERON/46/UBERON_0000046.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000046 * *Label* = stemma - * *Definition* = eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eye#Pit_eyes[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stemma] + * *Definition* = eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eye#Pit_eyes, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stemma ] ## Synonyms - * pit eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eye#Pit_eyes] + * pit eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eye#Pit_eyes ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0000346.md b/md/UBERON/46/UBERON_0000346.md index 0293693bb1..02958fae64 100644 --- a/md/UBERON/46/UBERON_0000346.md +++ b/md/UBERON/46/UBERON_0000346.md @@ -7,7 +7,7 @@ ## Synonyms - * myelinated plasma membrane of Schwann cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73417] + * myelinated plasma membrane of Schwann cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73417 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0000446.md b/md/UBERON/46/UBERON_0000446.md index 5d09df8a55..4c3f4001ae 100644 --- a/md/UBERON/46/UBERON_0000446.md +++ b/md/UBERON/46/UBERON_0000446.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000446 * *Label* = septum of telencephalon - * *Definition* = Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_963] + * *Definition* = Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_963 ] ## Synonyms - * area septalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61842[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61842] - * septum (NN) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61842] - * telencephalon septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61842] - * Se [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_963] - * Septal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SEP] - * massa praecommissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:255[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septum pellucidum (BNA,PNA) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:255[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septum telencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:255[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area septalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61842, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61842 ] + * septum (NN) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61842 ] + * telencephalon septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61842 ] + * Se [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_963 ] + * Septal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SEP ] + * massa praecommissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:255, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septum pellucidum (BNA,PNA) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:255, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septum telencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:255, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,8 @@ * MA:0000924 * MESH:A08.186.211.577.750 * NIF_GrossAnatomy:birnlex_963 - * NeuroNames:255 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_963] - * UMLS:C0752060 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_963] + * NeuroNames:255 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_963 ] + * UMLS:C0752060 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_963 ] ## Subsets @@ -53,8 +53,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA][FMA:61842]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0000946.md b/md/UBERON/46/UBERON_0000946.md index a104790a5f..80c698d111 100644 --- a/md/UBERON/46/UBERON_0000946.md +++ b/md/UBERON/46/UBERON_0000946.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000946 * *Label* = cardial valve - * *Definition* = Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_valve] + * *Definition* = Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_valve ] * *Comment* = Terminology notes: Rector et al: One might be tempted to define 'heart valve' equivalently to 'valve in the heart', and 'valve' as a 'structure which functions as a valve'. But this combination results in the 'foramen ovale' being classified as a kind of 'heart valve', since it is undoubtedly located in the heart and functions as a valve ## Synonyms * heart valve * valve of heart - * cardiac valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003170] + * cardiac valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003170 ] * heart valves * stomodaeal valve @@ -26,7 +26,7 @@ * OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA * SCTID:181285005 * TAO:0005065 - * UMLS:C0018826 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Valve] + * UMLS:C0018826 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Valve ] * VHOG:0000818 * Wikipedia:Cardiac_valve * XAO:0004126 @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the four structures within the heart that prevent backflow of blood by opening and closing with each heartbeat. The valves include two semilunar valves, the aortic and pulmonary; the mitral or bicuspid valve; and the tricuspid valve. The valves permit blood flow in only one direction. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Extensive conservation of valve developmental mechanisms also has been observed among vertebrate species including chicken, mouse, and human.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001046.md b/md/UBERON/46/UBERON_0001046.md index 09e3fb1801..7b7fa651d6 100644 --- a/md/UBERON/46/UBERON_0001046.md +++ b/md/UBERON/46/UBERON_0001046.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001046 * *Label* = hindgut - * *Definition* = Posterior subdivision of a digestive tract[CJM]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hindgut] + * *Definition* = Posterior subdivision of a digestive tract[CJM]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hindgut ] * *Comment* = Editor notes: Note we define this generically to include invertebrates (partly for consistency with GO), but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children. ## Synonyms - * metenteron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hindgut[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * metenteron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hindgut, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001527 * SCTID:362856002 * TGMA:0001020 - * UMLS:C0231053 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hindgut] + * UMLS:C0231053 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hindgut ] * VHOG:0000459 * Wikipedia:Hindgut * XAO:0000104 @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001146.md b/md/UBERON/46/UBERON_0001146.md index 77ba1f8e87..d47ba32da4 100644 --- a/md/UBERON/46/UBERON_0001146.md +++ b/md/UBERON/46/UBERON_0001146.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001146 * *Label* = suprarenal vein - * *Definition* = The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprarenal_vein] + * *Definition* = The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprarenal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:14348 * MA:0002229 * SCTID:278194009 - * UMLS:C0226717 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Suprarenal_Vein] + * UMLS:C0226717 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Suprarenal_Vein ] * Wikipedia:Suprarenal_vein * http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png * ncithesaurus:Suprarenal_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001246.md b/md/UBERON/46/UBERON_0001246.md index 670b1b8969..dd21ca8654 100644 --- a/md/UBERON/46/UBERON_0001246.md +++ b/md/UBERON/46/UBERON_0001246.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001246 * *Label* = interlobular bile duct - * *Definition* = the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009500] + * *Definition* = the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009500 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:15767 * MA:0002668 * SCTID:83488001 - * UMLS:C0227515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interlobular_Bile_Duct] + * UMLS:C0227515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interlobular_Bile_Duct ] * ncithesaurus:Interlobular_Bile_Duct ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001346.md b/md/UBERON/46/UBERON_0001346.md index 283e25592f..133f2d5cca 100644 --- a/md/UBERON/46/UBERON_0001346.md +++ b/md/UBERON/46/UBERON_0001346.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001346 * *Label* = vaginal hymen - * *Definition* = The hymen, or the vaginal corona, is a fold of mucous membrane that surrounds or partially covers the external vaginal opening. It forms part of the vulva, or external genitalia[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hymen] + * *Definition* = The hymen, or the vaginal corona, is a fold of mucous membrane that surrounds or partially covers the external vaginal opening. It forms part of the vulva, or external genitalia[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hymen ] ## Synonyms - * hymen of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20005] + * hymen of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20005 ] * hymen vaginae - * hymen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A05.360.319.779.479] - * hymen vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hymen[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vaginal corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hymen] + * hymen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A05.360.319.779.479 ] + * hymen vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hymen, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vaginal corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hymen ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002465 * MESH:A05.360.319.779.479 * SCTID:245473005 - * UMLS:C0020412 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hymen] + * UMLS:C0020412 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hymen ] * Wikipedia:Hymen * http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png * ncithesaurus:Hymen @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001446.md b/md/UBERON/46/UBERON_0001446.md index 307181c9d0..0cb00a8ae1 100644 --- a/md/UBERON/46/UBERON_0001446.md +++ b/md/UBERON/46/UBERON_0001446.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001446 * *Label* = fibula - * *Definition* = The major postaxial endochondral bone in the posterior zeugopod[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = The major postaxial endochondral bone in the posterior zeugopod[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] ## Synonyms @@ -21,7 +21,7 @@ * MA:0001360 * MESH:A02.835.232.500.321 * SCTID:302529003 - * UMLS:C0016068 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fibula] + * UMLS:C0016068 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fibula ] * Wikipedia:Fibula * galen:Fibula * http://upload.wikimedia.org/wikipedia/commons/1/16/Illu_lower_extremity.jpg @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [fibula endochondral element](../../UBERON/13/UBERON_0015013.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = fibular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001546.md b/md/UBERON/46/UBERON_0001546.md index 1a3d1ddff6..e8123b6e5b 100644 --- a/md/UBERON/46/UBERON_0001546.md +++ b/md/UBERON/46/UBERON_0001546.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001546 * *Label* = posterior tibial vein - * *Definition* = In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tibial_vein] + * *Definition* = In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tibial_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae tibiales posteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_tibial_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae tibiales posteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_tibial_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002245 * OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA * SCTID:281067009 - * UMLS:C0226832 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Tibial_Vein] + * UMLS:C0226832 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Tibial_Vein ] * Wikipedia:Posterior_tibial_vein * galen:PosteriorTibialVein * http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001646.md b/md/UBERON/46/UBERON_0001646.md index d7cdb1889c..c4c852d44c 100644 --- a/md/UBERON/46/UBERON_0001646.md +++ b/md/UBERON/46/UBERON_0001646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001646 * *Label* = abducens nerve - * *Definition* = Cranial nerve that runs to the eye muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abducens_nerve] + * *Definition* = Cranial nerve that runs to the eye muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abducens_nerve ] * *Comment* = Taxon notes: Homologous abducens nerves are found in all vertebrates except lampreys and hagfishes.[WP] It controls the movement of a single muscle, the lateral rectus muscle of the eye, in humans. In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection[WP] ## Synonyms @@ -14,15 +14,15 @@ * abducent nerve [VI] * lateral rectus nerve * nervus abducens - * nervus abducens [VI] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50867[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus abducens [VI] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50867, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sixth cranial nerve - * 6n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_876[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 6n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_876, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-VI - * abducens nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:6n] + * abducens nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:6n ] * abducent nerve * cranial nerve VI - * nerve VI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:550] - * nervus abducens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abducens_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve VI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:550 ] + * nervus abducens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abducens_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,12 +36,12 @@ * MA:0001087 * MESH:A08.800.800.120.030 * NIF_GrossAnatomy:birnlex_876 - * NeuroNames:550 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_876] + * NeuroNames:550 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_876 ] * OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA * SCTID:180941005 * TAO:0000310 - * UMLS:C0000741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_876] - * UMLS:C0000741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abducens_Nerve] + * UMLS:C0000741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_876 ] + * UMLS:C0000741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abducens_Nerve ] * VHOG:0000697 * Wikipedia:Abducens_nerve * XAO:0003093 @@ -73,8 +73,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Somatic motor nerve which bifurcates innervating m. rectus lateralis and m. retractor bulbi (eye muscles).[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001746.md b/md/UBERON/46/UBERON_0001746.md index 90e94ca732..a214110451 100644 --- a/md/UBERON/46/UBERON_0001746.md +++ b/md/UBERON/46/UBERON_0001746.md @@ -15,7 +15,7 @@ * FMA:55513 * MA:0002675 * SCTID:176859009 - * UMLS:C0229575 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Gland_Capsule] + * UMLS:C0229575 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Gland_Capsule ] * ncithesaurus:Thyroid_Gland_Capsule ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001846.md b/md/UBERON/46/UBERON_0001846.md index 2d06fefdc4..bcd78ee02f 100644 --- a/md/UBERON/46/UBERON_0001846.md +++ b/md/UBERON/46/UBERON_0001846.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001846 * *Label* = internal ear - * *Definition* = Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16217737[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_ear[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16217737, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_ear, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * inner ear - * auris interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000630] + * auris interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000630 ] * labyrinth * otocyst @@ -33,9 +33,9 @@ * OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA * SCTID:181189006 * TAO:0000217 - * UMLS:C0022889 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1196] - * UMLS:C0022889 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Ear] - * UMLS:C1268973 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1196] + * UMLS:C0022889 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1196 ] + * UMLS:C0022889 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Ear ] + * UMLS:C1268973 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1196 ] * VHOG:0000284 * Wikipedia:Internal_ear * XAO:0000192 @@ -69,8 +69,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0001946.md b/md/UBERON/46/UBERON_0001946.md index e0b222f6ba..f89d74d8cc 100644 --- a/md/UBERON/46/UBERON_0001946.md +++ b/md/UBERON/46/UBERON_0001946.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001946 * *Label* = inferior colliculus - * *Definition* = Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_806] + * *Definition* = Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_806 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * caudal colliculus - * inferior colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * inferior colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * posterior colliculus * posterior corpus quadrigeminum - * colliculus caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * colliculus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_colliculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus bigeminalis caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus bigeminum posterioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus quadrigeminum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * colliculus caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * colliculus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_colliculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus bigeminalis caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus bigeminum posterioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus quadrigeminum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,8 @@ * MA:0001067 * MESH:A08.186.211.132.659.237.364 * NIF_GrossAnatomy:birnlex_806 - * NeuroNames:476 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_806] - * UMLS:C0228411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_806] + * NeuroNames:476 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_806 ] + * UMLS:C0228411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_806 ] * Wikipedia:Inferior_colliculus * http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002046.md b/md/UBERON/46/UBERON_0002046.md index 30d8b0b337..b0b5a691da 100644 --- a/md/UBERON/46/UBERON_0002046.md +++ b/md/UBERON/46/UBERON_0002046.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002046 * *Label* = thyroid gland - * *Definition* = A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001379[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid] + * *Definition* = A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001379, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid ] ## Synonyms * thyroid - * glandula thyroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula thyroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,7 +30,7 @@ * MIAA:0000081 * OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA * SCTID:181117000 - * UMLS:C0040132 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Gland] + * UMLS:C0040132 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Gland ] * VHOG:0000418 * Wikipedia:Thyroid * XAO:0000162 @@ -72,8 +72,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In larval lampreys, the thyroid originates as an exocrine gland, secreting its hormones into the gut, and associated with the larva's filter-feeding apparatus. In the adult lamprey, the gland separates from the gut, and becomes endocrine, but this path of development may reflect the evolutionary origin of the thyroid. For instance, the closest living relatives of vertebrates, the tunicates and Amphioxus, have a structure very similar to that of larval lampreys, and this also secretes iodine-containing compounds (albeit not thyroxine) * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In tetrapods, the thyroid is always found somewhere in the neck region. In most tetrapod species, there are two paired thyroid glands - that is, the right and left lobes are not joined together. However, there is only ever a single thyroid gland in most mammals, and the shape found in humans is common to many other species * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002146.md b/md/UBERON/46/UBERON_0002146.md index d5970bf838..28c24ad900 100644 --- a/md/UBERON/46/UBERON_0002146.md +++ b/md/UBERON/46/UBERON_0002146.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002146 * *Label* = pulmonary valve - * *Definition* = Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_valve] + * *Definition* = Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_valve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * pulmonic valve - * valva trunci pulmonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_valve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valva trunci pulmonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_valve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.541.510.738 * OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA * SCTID:181289004 - * UMLS:C0034086 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pulmonary_Valve] + * UMLS:C0034086 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pulmonary_Valve ] * VHOG:0000814 * Wikipedia:Pulmonary_valve * galen:PulmonaryValve @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The valve with semilunar cusps at the entrance to the pulmonary trunk from the right ventricle of the heart. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002246.md b/md/UBERON/46/UBERON_0002246.md index dabb8cb455..1b225becf9 100644 --- a/md/UBERON/46/UBERON_0002246.md +++ b/md/UBERON/46/UBERON_0002246.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002246 * *Label* = dorsal thoracic nucleus - * *Definition* = Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090102] + * *Definition* = Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090102 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -12,13 +12,13 @@ * Clarke's nucleus * Stilling-Clarke's column * Stilling-Clarke's nucleus - * dorsal nucleus of Clarke [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73912] - * nucleus thoracicus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77023[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal nucleus of Clarke [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73912 ] + * nucleus thoracicus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77023, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * posterior thoracic nucleus * spinal cord dorsal nucleus - * Clarke's nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090102[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * dorsal nucleus of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DSN] - * dorsal nucleus of the spinal cord rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DSN] + * Clarke's nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090102, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * dorsal nucleus of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DSN ] + * dorsal nucleus of the spinal cord rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DSN ] ## Cross-references @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Clarke's column (column of Clarke, dorsal nucleus, posterior thoracic nucleus, nucleus dorsalis of Clarke) is a group of interneurons found in the medial part of Lamina VII, also known as the intermediate zone, of the spinal cord. It is mainly located from the T1 to L3-L4 levels and is an important structure for proprioception[Wikipedia:Posterior_thoracic_nucleus]. * *[contributor](../../or/contributor.md)* = Sarah M. Maynard - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002346.md b/md/UBERON/46/UBERON_0002346.md index 8e7dfa789c..c88fc4e724 100644 --- a/md/UBERON/46/UBERON_0002346.md +++ b/md/UBERON/46/UBERON_0002346.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002346 * *Label* = neurectoderm - * *Definition* = Embryonic ectoderm that gives rise to nervous tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuroectoderm] + * *Definition* = Embryonic ectoderm that gives rise to nervous tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuroectoderm ] * *Comment* = Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here ## Synonyms * neural ectoderm * neuroectoderm - * epithelium tubi neuralis; neuroectoderma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neuroectoderm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epithelium tubi neuralis; neuroectoderma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neuroectoderm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * neuaral ectoderm * presumptive central nervous system - * ventral neurogenic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000150] + * ventral neurogenic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000150 ] ## Cross-references @@ -30,7 +30,7 @@ * MAT:0000176 * MIAA:0000176 * TAO:0001120 - * UMLS:C1518271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neuroectoderm] + * UMLS:C1518271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neuroectoderm ] * VHOG:0000150 * Wikipedia:Neuroectoderm * XAO:0000042 @@ -61,8 +61,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the ability of ectoderm to produce neuronal cells is a general metazoan feature.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = neurectodermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002446.md b/md/UBERON/46/UBERON_0002446.md index ea3d60d94d..7aa534c960 100644 --- a/md/UBERON/46/UBERON_0002446.md +++ b/md/UBERON/46/UBERON_0002446.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002446 * *Label* = patella - * *Definition* = A large sesamoid bone found in the distal femur/proximal tibial region of the hindlimb of tetrapods. The patella is the attachment site for proximal hindlimb tendons.[PHENOSCAPE:ad] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834] + * *Definition* = A large sesamoid bone found in the distal femur/proximal tibial region of the hindlimb of tetrapods. The patella is the attachment site for proximal hindlimb tendons.[PHENOSCAPE:ad] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834 ] * *Comment* = The patella, also known as the knee cap or kneepan, is the largest sesamoid bone in the human body. The primary functional role of the patella is knee extension. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. See also: fabella. ## Synonyms - * knee bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24485] - * knee cap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Patella] - * patella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Patella[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * knee bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24485 ] + * knee cap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Patella ] + * patella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Patella, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001374 * MESH:A02.835.232.500.624 * SCTID:182083008 - * UMLS:C0030647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Patella] + * UMLS:C0030647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Patella ] * Wikipedia:Patella * galen:Patella * http://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = patellar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002546.md b/md/UBERON/46/UBERON_0002546.md index 5d03999a67..b648990b65 100644 --- a/md/UBERON/46/UBERON_0002546.md +++ b/md/UBERON/46/UBERON_0002546.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002546 * *Label* = cranial placode - * *Definition* = Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/books/NBK53175/[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/seger/aao/issues/4[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3561940&group_id=76834&atid=1127722] + * *Definition* = Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/books/NBK53175/, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/seger/aao/issues/4, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3561940&group_id=76834&atid=1127722 ] * *Comment* = Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. ## Synonyms - * placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Placode] + * placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Placode ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002646.md b/md/UBERON/46/UBERON_0002646.md index ba442d61c6..69a34e0959 100644 --- a/md/UBERON/46/UBERON_0002646.md +++ b/md/UBERON/46/UBERON_0002646.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002646 * *Label* = dorsal longitudinal fasciculus of medulla - * *Definition* = A dorsal longitudinal fasciculus that is part of a medulla [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal longitudinal fasciculus that is part of a medulla [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bundle of Schutz of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus of Schutz of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla bundle of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla dorsal longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla fasciculus of Schutz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla posterior longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior longitudinal fasciculus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal longitudinal fasciculus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:783] - * fasciculus longitudinalis dorsalis (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:783[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bundle of Schutz of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus of Schutz of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla bundle of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla dorsal longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla fasciculus of Schutz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla posterior longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior longitudinal fasciculus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal longitudinal fasciculus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:783 ] + * fasciculus longitudinalis dorsalis (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:783, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dlfm * FMA:72617 * NIF_GrossAnatomy:birnlex_1257 - * NeuroNames:783 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1257] - * UMLS:C0228537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1257] + * NeuroNames:783 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1257 ] + * UMLS:C0228537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1257 ] ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal longitudinal fasciculus](../../UBERON/45/UBERON_0003045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002746.md b/md/UBERON/46/UBERON_0002746.md index 2edb401dec..ff2e0b6733 100644 --- a/md/UBERON/46/UBERON_0002746.md +++ b/md/UBERON/46/UBERON_0002746.md @@ -6,13 +6,13 @@ ## Synonyms - * intermediate periventricular nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62328] - * periventricular nucleus at the tuberal level [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62328] - * IPe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1564[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Intermediate periventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVI] - * intermediate periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IPe] - * nucleus periventricularis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:394[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periventricular hypothalamic nucleus, intermediate part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:394] + * intermediate periventricular nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62328 ] + * periventricular nucleus at the tuberal level [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62328 ] + * IPe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1564, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Intermediate periventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVI ] + * intermediate periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IPe ] + * nucleus periventricularis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:394, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periventricular hypothalamic nucleus, intermediate part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:394 ] ## Cross-references @@ -20,8 +20,8 @@ * BAMS:PVI * FMA:62328 * NIF_GrossAnatomy:birnlex_1564 - * NeuroNames:394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1564] - * UMLS:C0694604 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1564] + * NeuroNames:394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1564 ] + * UMLS:C0694604 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1564 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002846.md b/md/UBERON/46/UBERON_0002846.md index 674642f2d6..ef95e3be08 100644 --- a/md/UBERON/46/UBERON_0002846.md +++ b/md/UBERON/46/UBERON_0002846.md @@ -6,15 +6,15 @@ ## Synonyms - * second thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6322] - * second thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6322] + * second thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6322 ] + * second thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6322 ] ## Cross-references * EMAPA:25175 * FMA:6322 * NIF_GrossAnatomy:birnlex_2612 - * UMLS:C0501700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2612] + * UMLS:C0501700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2612 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0002946.md b/md/UBERON/46/UBERON_0002946.md index 0e2df2db4d..81714fe7e9 100644 --- a/md/UBERON/46/UBERON_0002946.md +++ b/md/UBERON/46/UBERON_0002946.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002946 * *Label* = regional part of cerebellum - * *Definition* = A regional part of brain that is part of a cerebellum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a cerebellum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_748] + * segment of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_748 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003046.md b/md/UBERON/46/UBERON_0003046.md index 3c7c38051b..0f4469278f 100644 --- a/md/UBERON/46/UBERON_0003046.md +++ b/md/UBERON/46/UBERON_0003046.md @@ -6,17 +6,17 @@ ## Synonyms - * anterior acoustic stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72498] - * stria cochlearis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72498[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * striae acusticae ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:604[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior acoustic stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72498 ] + * stria cochlearis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72498, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * striae acusticae ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:604, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:vas * FMA:72498 * NIF_GrossAnatomy:birnlex_991 - * NeuroNames:604 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_991] - * UMLS:C0175456 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_991] + * NeuroNames:604 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_991 ] + * UMLS:C0175456 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_991 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003146.md b/md/UBERON/46/UBERON_0003146.md index 122eefcbbe..239a03a131 100644 --- a/md/UBERON/46/UBERON_0003146.md +++ b/md/UBERON/46/UBERON_0003146.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003023 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000088 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003146 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_0003246.md b/md/UBERON/46/UBERON_0003246.md index 1dbc4dd336..8c4c3811cc 100644 --- a/md/UBERON/46/UBERON_0003246.md +++ b/md/UBERON/46/UBERON_0003246.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003246 * *Label* = epithelium of endolymphatic sac - * *Definition* = An epithelium that is part of a endolymphatic sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a endolymphatic sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endolymphatic sac epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endolymphatic sac epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of endolymphatic sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endolymphatic sac epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endolymphatic sac epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of endolymphatic sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endolymphatic sac](../../UBERON/23/UBERON_0002223.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003346.md b/md/UBERON/46/UBERON_0003346.md index 725a5993be..4608199e36 100644 --- a/md/UBERON/46/UBERON_0003346.md +++ b/md/UBERON/46/UBERON_0003346.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003346 * *Label* = mucosa of rectum - * *Definition* = A mucosa that is part of a rectum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a rectum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15033] - * rectal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15033] - * rectum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15033 ] + * rectal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15033 ] + * rectum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003446.md b/md/UBERON/46/UBERON_0003446.md index f52f08aab7..d2b84a8319 100644 --- a/md/UBERON/46/UBERON_0003446.md +++ b/md/UBERON/46/UBERON_0003446.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003446 * *Label* = ankle nerve - * *Definition* = A nerve that is part of an ankle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of an ankle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: FMA placement dubious ## Synonyms - * nerve of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tarsal region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * neural network of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86901] + * nerve of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tarsal region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * neural network of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86901 ] ## Cross-references @@ -26,16 +26,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003446 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/FMA_86901 +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_0003546.md b/md/UBERON/46/UBERON_0003546.md index 5b08a4db68..81cd0e8354 100644 --- a/md/UBERON/46/UBERON_0003546.md +++ b/md/UBERON/46/UBERON_0003546.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003546 * *Label* = distal convoluted tubule macula densa - * *Definition* = A macula densa that is part of a distal convoluted tubule [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A macula densa that is part of a distal convoluted tubule [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [macula densa](../../UBERON/35/UBERON_0002335.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal convoluted tubule](../../UBERON/92/UBERON_0001292.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003646.md b/md/UBERON/46/UBERON_0003646.md index 20a0f2c650..7043e5d20a 100644 --- a/md/UBERON/46/UBERON_0003646.md +++ b/md/UBERON/46/UBERON_0003646.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003646 * *Label* = metacarpal bone of digit 2 - * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2 nd digit of hand metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd digit of hand metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 2 nd finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 2 nd digit of hand metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd digit of hand metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 2 nd finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * finger 2 metacarpus - * hand digit 2 metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 2 metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hand digit 2 metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 2 metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual digit 2 metacarpus * metacarpal 2 - * metacarpal II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23900] - * metacarpal bone digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001365] - * metacarpal bone of 2 nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of 2 nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 2 nd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 2 nd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of hand digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23900] + * metacarpal II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23900 ] + * metacarpal bone digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001365 ] + * metacarpal bone of 2 nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of 2 nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 2 nd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 2 nd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of hand digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23900 ] ## Cross-references @@ -37,7 +37,7 @@ * FMA:23900 * MA:0001365 * SCTID:263399007 - * UMLS:C1708988 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone_Digit_2] + * UMLS:C1708988 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone_Digit_2 ] * ncithesaurus:Metacarpal_Bone_Digit_2 ## Subsets @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of manual digit 2](../../UBERON/28/UBERON_0004328.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO] * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003846.md b/md/UBERON/46/UBERON_0003846.md index 1b2c7ec4c5..b4b345859c 100644 --- a/md/UBERON/46/UBERON_0003846.md +++ b/md/UBERON/46/UBERON_0003846.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003846 * *Label* = thymus epithelium - * *Definition* = the supporting framework of the thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009544] + * *Definition* = the supporting framework of the thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009544 ] ## Synonyms - * epithelial tissue of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * thymic epithelial tissue - * thymic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001836] - * thymus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thymic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001836 ] + * thymus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,7 +23,7 @@ * CALOHA:TS-1040 * EHDAA2:0002019 * MA:0000768 - * UMLS:C1711423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Epithelial_Tissue] + * UMLS:C1711423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Epithelial_Tissue ] * VHOG:0001426 * ncithesaurus:Thymic_Epithelial_Tissue @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0003946.md b/md/UBERON/46/UBERON_0003946.md index 4d090b64da..02090282a8 100644 --- a/md/UBERON/46/UBERON_0003946.md +++ b/md/UBERON/46/UBERON_0003946.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003946 * *Label* = placenta labyrinth - * *Definition* = the placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001716] + * *Definition* = the placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001716 ] * *Comment* = Taxon notes: Mouse-human differences: The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively ... The mouse placental labyrinth is composed of an intricate network of maternal blood spaces and embryonal blood vessels. Maternal and embryonal blood is separated by a placental barrier that consists of four cellular layers: layer I trophoblasts line the maternal lacunae, trophoblasts in layers II and III form syncytial-like layers, and endothelial cells line the embryonic vessels[doi: 10.1073/pnas.96.14.8138 ]. See also: http://placentation.ucsd.edu/placenta.html ## Synonyms - * labyrinthine layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060713] - * labyrinthine layer of placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060713] + * labyrinthine layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060713 ] + * labyrinthine layer of placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060713 ] * placental labyrinth ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004046.md b/md/UBERON/46/UBERON_0004046.md index bc62cd36c6..7066613229 100644 --- a/md/UBERON/46/UBERON_0004046.md +++ b/md/UBERON/46/UBERON_0004046.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004046 * *Label* = anterior definitive endoderm - * *Definition* = the mesendoderm which first migrates from the node and which gives rise to the gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008926] + * *Definition* = the mesendoderm which first migrates from the node and which gives rise to the gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008926 ] * *Comment* = TODO - check ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004146.md b/md/UBERON/46/UBERON_0004146.md index 0ee619133f..149836cb07 100644 --- a/md/UBERON/46/UBERON_0004146.md +++ b/md/UBERON/46/UBERON_0004146.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004146 * *Label* = His-Purkinje system - * *Definition* = The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003164] + * *Definition* = The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003164 ] ## Synonyms - * HPS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005071] - * His-Purkinji network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005071] - * distal conduction system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005071] + * HPS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005071 ] + * His-Purkinji network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005071 ] + * distal conduction system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005071 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004246.md b/md/UBERON/46/UBERON_0004246.md index e09dee964d..d18887338d 100644 --- a/md/UBERON/46/UBERON_0004246.md +++ b/md/UBERON/46/UBERON_0004246.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004246 * *Label* = outflow tract smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a outflow tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a outflow tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * involuntary muscle of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * involuntary muscle of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004346.md b/md/UBERON/46/UBERON_0004346.md index 06c2a26cde..941ab0df5d 100644 --- a/md/UBERON/46/UBERON_0004346.md +++ b/md/UBERON/46/UBERON_0004346.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004346 * *Label* = gubernaculum - * *Definition* = embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005149[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gubernaculum] + * *Definition* = embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005149, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gubernaculum ] * *Comment* = WP def is male/female, split term? EMAP is male-specific. vestigial adult in FMA. TODO ## Synonyms - * Gabernaculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gubernaculum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * caudal suspensory ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19089] - * gubernaculae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * Gabernaculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gubernaculum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * caudal suspensory ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19089 ] + * gubernaculae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references - * UMLS:C0228051 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gubernaculum_Testis] + * UMLS:C0228051 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gubernaculum_Testis ] * Wikipedia:Gubernaculum * http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png * ncithesaurus:Gubernaculum_Testis @@ -45,8 +45,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gubernacular * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000452 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004446.md b/md/UBERON/46/UBERON_0004446.md index 72079a04d6..ea8ebcf843 100644 --- a/md/UBERON/46/UBERON_0004446.md +++ b/md/UBERON/46/UBERON_0004446.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004446 * *Label* = epiphysis of phalanx - * *Definition* = An epiphysis that is part of a phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004546.md b/md/UBERON/46/UBERON_0004546.md index 353bdfe488..473ed4c763 100644 --- a/md/UBERON/46/UBERON_0004546.md +++ b/md/UBERON/46/UBERON_0004546.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004546 * *Label* = cribriform plate - * *Definition* = The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting al, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are largerthe former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cribriform_plate] + * *Definition* = The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting al, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are largerthe former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cribriform_plate ] ## Synonyms - * cribiform plate of ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cribriform_plate] - * ethmoid bone lamina cribrosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004141] - * lamina cribrosa of ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004141] - * lamina cribrosa ossis ethmoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cribriform_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cribiform plate of ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cribriform_plate ] + * ethmoid bone lamina cribrosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004141 ] + * lamina cribrosa of ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004141 ] + * lamina cribrosa ossis ethmoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cribriform_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004646.md b/md/UBERON/46/UBERON_0004646.md index e692c2f957..6d1ebad232 100644 --- a/md/UBERON/46/UBERON_0004646.md +++ b/md/UBERON/46/UBERON_0004646.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004646 * *Label* = infraorbital artery - * *Definition* = The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraorbital_artery] + * *Definition* = The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraorbital_artery ] ## Synonyms - * infra-orbital artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49767] - * a. infraorbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraorbital_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * infra-orbital artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49767 ] + * a. infraorbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraorbital_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49767 * MA:0001977 * SCTID:148167004 - * UMLS:C0226153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Infraorbital_Artery] + * UMLS:C0226153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Infraorbital_Artery ] * Wikipedia:Infraorbital_artery * http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray511.png/200px-Gray511.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004746.md b/md/UBERON/46/UBERON_0004746.md index 9f374ee969..5c40df9cfe 100644 --- a/md/UBERON/46/UBERON_0004746.md +++ b/md/UBERON/46/UBERON_0004746.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004746 * *Label* = prootic bone - * *Definition* = Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000514] + * *Definition* = Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000514 ] ## Synonyms - * prootic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000514] - * prootics [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000575[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * prootic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000514 ] + * prootics [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000575, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -47,8 +47,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps prootic-pterosphenoid joint (TAO:0002033)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0004946.md b/md/UBERON/46/UBERON_0004946.md index 1710a2b5a7..a0e16d2f64 100644 --- a/md/UBERON/46/UBERON_0004946.md +++ b/md/UBERON/46/UBERON_0004946.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004946 * *Label* = submucosa of ileum - * *Definition* = A submucosa that is part of a ileum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a ileum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ileal submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14957] - * ileum submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ileal submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14957 ] + * ileum submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005046.md b/md/UBERON/46/UBERON_0005046.md index faff6ece97..e1fe9ad5d2 100644 --- a/md/UBERON/46/UBERON_0005046.md +++ b/md/UBERON/46/UBERON_0005046.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005046 * *Label* = mucosa of hard palate - * *Definition* = A mucosa that is part of a hard palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a hard palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hard palate mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hard palate mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of hard palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of hard palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hard palate mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hard palate mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of hard palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of hard palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005146.md b/md/UBERON/46/UBERON_0005146.md index 43d7c2c922..e90df8627c 100644 --- a/md/UBERON/46/UBERON_0005146.md +++ b/md/UBERON/46/UBERON_0005146.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005146 * *Label* = metanephric nephron tubule - * *Definition* = A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072282] + * *Definition* = A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072282 ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nephron tubule](../../UBERON/31/UBERON_0001231.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005128 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005152 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005346.md b/md/UBERON/46/UBERON_0005346.md index 6674220958..1c7e080077 100644 --- a/md/UBERON/46/UBERON_0005346.md +++ b/md/UBERON/46/UBERON_0005346.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005346 * *Label* = cerebellum vermis lobule VIIb - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009999] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009999 ] ## Synonyms - * vermic lobule VIIb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081232] - * tuber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081232] - * tuberal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tuberal_region] + * vermic lobule VIIb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081232 ] + * tuber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081232 ] + * tuberal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tuberal_region ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005446.md b/md/UBERON/46/UBERON_0005446.md index 3e1db722e1..1cc1bccaf2 100644 --- a/md/UBERON/46/UBERON_0005446.md +++ b/md/UBERON/46/UBERON_0005446.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005446 * *Label* = foramen rotundum - * *Definition* = The foramen rotundum is a circular hole in the sphenoid bone that connects the middle cranial fossa and the pterygopalatine fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_rotundum] + * *Definition* = The foramen rotundum is a circular hole in the sphenoid bone that connects the middle cranial fossa and the pterygopalatine fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_rotundum ] * *Comment* = AAO to be checked ## Synonyms - * foramen rotundum of the skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_rotundum] - * foramen rotundum ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_rotundum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * round foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001543] + * foramen rotundum of the skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_rotundum ] + * foramen rotundum ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_rotundum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * round foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001543 ] ## Cross-references @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A circular hole in the sphenoid bone that connects the middle cranial fossa and the pterygopalatine fossa.vity. [http://en.wikipedia.org/wiki/Foramen_rotundum][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It is suggested that the mammalian lamina ascendens arose from an upgrowth of the root of the quadrate ramus of the epipterygoid in cynodonts, separating foramen rotundum from foramen ovale.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005646.md b/md/UBERON/46/UBERON_0005646.md index 6f87a0dde7..0aaf9061a2 100644 --- a/md/UBERON/46/UBERON_0005646.md +++ b/md/UBERON/46/UBERON_0005646.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005646 * *Label* = manual digit 3 epithelium - * *Definition* = An epithelium that is part of a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 3 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 3 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005746.md b/md/UBERON/46/UBERON_0005746.md index 997373d36e..fcacd9f7b4 100644 --- a/md/UBERON/46/UBERON_0005746.md +++ b/md/UBERON/46/UBERON_0005746.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005746 * *Label* = primary vitreous humour - * *Definition* = embryonic fibrovascular mesodermal tissue located between the optic cup and lens vesicle that normally regresses during the development of the vitreous body[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010711] + * *Definition* = embryonic fibrovascular mesodermal tissue located between the optic cup and lens vesicle that normally regresses during the development of the vitreous body[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010711 ] * *Comment* = Acellular in EHDAA2, MP defs says tissue ## Synonyms - * primary vitreous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010711] + * primary vitreous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010711 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0005946.md b/md/UBERON/46/UBERON_0005946.md index 59f6043c6e..487cf6491b 100644 --- a/md/UBERON/46/UBERON_0005946.md +++ b/md/UBERON/46/UBERON_0005946.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005946 * *Label* = outflow tract of atrium - * *Definition* = An outflow tract that is part of a cardiac atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An outflow tract that is part of a cardiac atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * outflow part of atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14141] + * outflow part of atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14141 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract](../../UBERON/45/UBERON_0004145.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006146.md b/md/UBERON/46/UBERON_0006146.md index ed6779ab63..97cf5b3110 100644 --- a/md/UBERON/46/UBERON_0006146.md +++ b/md/UBERON/46/UBERON_0006146.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006146 * *Label* = dorsal digital artery of manus - * *Definition* = Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries] + * *Definition* = Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries ] ## Synonyms * dorsal digital artery of hand - * dorsal digital artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries] - * arteriae digitales dorsales manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal digital artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries ] + * arteriae digitales dorsales manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal digital artery](../../UBERON/63/UBERON_0006163.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006246.md b/md/UBERON/46/UBERON_0006246.md index 09e0aa04a4..c7b866a90b 100644 --- a/md/UBERON/46/UBERON_0006246.md +++ b/md/UBERON/46/UBERON_0006246.md @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [humerus endochondral element](../../UBERON/53/UBERON_0015053.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006446.md b/md/UBERON/46/UBERON_0006446.md index 0cabf82443..5519f7f6fc 100644 --- a/md/UBERON/46/UBERON_0006446.md +++ b/md/UBERON/46/UBERON_0006446.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006446 * *Label* = rostral middle frontal gyrus - * *Definition* = Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1090] + * *Definition* = Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1090 ] ## Synonyms - * anterior part of middle frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70687] - * rostral middle frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1090] + * anterior part of middle frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70687 ] + * rostral middle frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1090 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006646.md b/md/UBERON/46/UBERON_0006646.md index e5920afcc6..74fbe005d7 100644 --- a/md/UBERON/46/UBERON_0006646.md +++ b/md/UBERON/46/UBERON_0006646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006646 * *Label* = muscle layer of epididymis - * *Definition* = A muscle layer that is part of a epididymis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a epididymis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epididymis](../../UBERON/01/UBERON_0001301.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006846.md b/md/UBERON/46/UBERON_0006846.md index d424f8f33c..b240cf7827 100644 --- a/md/UBERON/46/UBERON_0006846.md +++ b/md/UBERON/46/UBERON_0006846.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006846 * *Label* = surface groove - * *Definition* = A furrow or an incomplete tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000161[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4] + * *Definition* = A furrow or an incomplete tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000161, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4 ] ## Synonyms - * groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000161] + * groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000161 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0006946.md b/md/UBERON/46/UBERON_0006946.md index 73a6c2acd4..8b7e0610d7 100644 --- a/md/UBERON/46/UBERON_0006946.md +++ b/md/UBERON/46/UBERON_0006946.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006946 * *Label* = efferent duct - * *Definition* = The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_ducts] + * *Definition* = The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_ducts ] * *Comment* = AO notes: Check EMAPA. Taxon notes: There are two basic designs for efferent ductule structure: a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis. b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis ## Synonyms - * efferent ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19081] - * efferent ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_ducts] + * efferent ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19081 ] + * efferent ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_ducts ] * seminal duct - * ductuli efferentes testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_ducts[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ductuli efferentes testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_ducts] - * vasa efferentia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010532[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_ducts] + * ductuli efferentes testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_ducts ] + * ductuli efferentes testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_ducts, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vasa efferentia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010532, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_ducts ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:18993 * FMA:19081 * MA:0000398 - * UMLS:C0228013 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Efferent_Ductule] + * UMLS:C0228013 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Efferent_Ductule ] * Wikipedia:Efferent_ducts * http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg * ncithesaurus:Efferent_Ductule @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of a group ranging from one to twelve (varies in species) small seminal ducts per testis which transport sperm from the testes to the kidney.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0007146.md b/md/UBERON/46/UBERON_0007146.md index a9225141e6..9de0304e61 100644 --- a/md/UBERON/46/UBERON_0007146.md +++ b/md/UBERON/46/UBERON_0007146.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007146 * *Label* = posterior spinal artery - * *Definition* = The posterior spinal artery (dorsal spinal artery) arises from the vertebral artery, adjacent to the medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_spinal_artery] + * *Definition* = The posterior spinal artery (dorsal spinal artery) arises from the vertebral artery, adjacent to the medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_spinal_artery ] ## Synonyms - * dorsal spinal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50522] + * dorsal spinal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50522 ] ## Cross-references * EMAPA:18243 * FMA:50522 * SCTID:181330009 - * UMLS:C0226233 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Spinal_Artery] + * UMLS:C0226233 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Spinal_Artery ] * Wikipedia:Posterior_spinal_artery * ncithesaurus:Posterior_Spinal_Artery @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0007646.md b/md/UBERON/46/UBERON_0007646.md index dd238d5636..37475bda4a 100644 --- a/md/UBERON/46/UBERON_0007646.md +++ b/md/UBERON/46/UBERON_0007646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007646 * *Label* = endomeninx - * *Definition* = the layer of embryonic mesoderm from which the arachnoid coat and pia mater of the brain develop. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/endomeninx] + * *Definition* = the layer of embryonic mesoderm from which the arachnoid coat and pia mater of the brain develop. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/endomeninx ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0007846.md b/md/UBERON/46/UBERON_0007846.md index 57839d1291..1640068fa6 100644 --- a/md/UBERON/46/UBERON_0007846.md +++ b/md/UBERON/46/UBERON_0007846.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007846 * *Label* = dense regular connective tissue - * *Definition* = Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000050[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000050, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * dense fibrous connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64781] - * dense regular collagenous connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64781] - * dense regular collagenous tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64781] + * dense fibrous connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64781 ] + * dense regular collagenous connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64781 ] + * dense regular collagenous tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64781 ] * regular dense connective tissue - * typus regularis (textus connectivus collagenosus compactus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64781] + * typus regularis (textus connectivus collagenosus compactus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64781 ] ## Cross-references * FMA:64781 * SCTID:22560007 - * UMLS:C0225333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Regular_Dense_Connective_Tissue] + * UMLS:C0225333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Regular_Dense_Connective_Tissue ] * VSAO:0000050 * Wikipedia:Dense_regular_connective_tissue * XAO:0004030 @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts).[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays.[FMA] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008246.md b/md/UBERON/46/UBERON_0008246.md index e3a2ee9018..da607998be 100644 --- a/md/UBERON/46/UBERON_0008246.md +++ b/md/UBERON/46/UBERON_0008246.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008246 * *Label* = pyloric stomach - * *Definition* = The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Starfish] + * *Definition* = The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Starfish ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008346.md b/md/UBERON/46/UBERON_0008346.md index fb9f85750b..42dd7ae7a6 100644 --- a/md/UBERON/46/UBERON_0008346.md +++ b/md/UBERON/46/UBERON_0008346.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008346 * *Label* = duodenal epithelium - * *Definition* = An epithelium that is part of a duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17231] + * epithelium of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17231 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008446.md b/md/UBERON/46/UBERON_0008446.md index 57913ddebb..1aa2b7262a 100644 --- a/md/UBERON/46/UBERON_0008446.md +++ b/md/UBERON/46/UBERON_0008446.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008446 * *Label* = flexor pollicis longus muscle - * *Definition* = A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle] + * *Definition* = A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle ] * *Comment* = Taxon notes: Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis[WP] ## Synonyms - * flexor pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle] - * flexor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle] - * flexor pollicis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle] - * musculus flexor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus flexor pollicis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_pollicis_longus_muscle] + * flexor pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle ] + * flexor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle ] + * flexor pollicis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle ] + * musculus flexor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle ] + * musculus flexor pollicis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_pollicis_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008546.md b/md/UBERON/46/UBERON_0008546.md index aea5ec8945..bda12ca207 100644 --- a/md/UBERON/46/UBERON_0008546.md +++ b/md/UBERON/46/UBERON_0008546.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008546 * *Label* = iliocostalis cervicis muscle - * *Definition* = The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis#Iliocostalis_cervicis] + * *Definition* = The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis#Iliocostalis_cervicis ] ## Synonyms - * cervicalis ascendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] - * cervicalis ascendens muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] - * iliocostalis cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] + * cervicalis ascendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] + * cervicalis ascendens muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] + * iliocostalis cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008846.md b/md/UBERON/46/UBERON_0008846.md index 66bec20d8d..9ed3fc6f45 100644 --- a/md/UBERON/46/UBERON_0008846.md +++ b/md/UBERON/46/UBERON_0008846.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008846 * *Label* = skeletal ligament - * *Definition* = Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Dense regular connective tissue connecting two or more adjacent skeletal elements[VSAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Editor notes: logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://sourceforge.net/tracker/?group_id=76834&atid=1205376 ## Synonyms - * articular larua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligament] - * articular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligament] - * true ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligament] - * ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000072[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001675] + * articular larua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligament ] + * articular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligament ] + * true ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligament ] + * ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000072, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001675 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [skeletal element](../../UBERON/65/UBERON_0004765.md) and [ligament](../../UBERON/11/UBERON_0000211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skeletal system](../../UBERON/34/UBERON_0001434.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament[FMA:25624]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0008946.md b/md/UBERON/46/UBERON_0008946.md index f408ef1055..bdbecad9b2 100644 --- a/md/UBERON/46/UBERON_0008946.md +++ b/md/UBERON/46/UBERON_0008946.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008946 * *Label* = lung parenchyma - * *Definition* = A parenchyma that is part of a lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * respiratory portion of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:27360] - * parenchyma of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000763] + * respiratory portion of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:27360 ] + * parenchyma of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000763 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0009046.md b/md/UBERON/46/UBERON_0009046.md index 995c031838..f148fc96e2 100644 --- a/md/UBERON/46/UBERON_0009046.md +++ b/md/UBERON/46/UBERON_0009046.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0009646.md b/md/UBERON/46/UBERON_0009646.md index a90c16603a..75f57ed8f8 100644 --- a/md/UBERON/46/UBERON_0009646.md +++ b/md/UBERON/46/UBERON_0009646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009646 * *Label* = lumbar sympathetic nerve trunk - * *Definition* = A sympathetic nerve trunk that is part of a lower back. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sympathetic nerve trunk that is part of a lower back. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0001163 - * UMLS:C1708762 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk] + * UMLS:C1708762 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk ] * ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower back](../../UBERON/62/UBERON_0005462.md) and [sympathetic nerve trunk](../../UBERON/95/UBERON_0004295.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0009746.md b/md/UBERON/46/UBERON_0009746.md index c35b0aee1b..499e2bd203 100644 --- a/md/UBERON/46/UBERON_0009746.md +++ b/md/UBERON/46/UBERON_0009746.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009746 * *Label* = head fold of embryonic disc - * *Definition* = the crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011257] + * *Definition* = the crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011257 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0009846.md b/md/UBERON/46/UBERON_0009846.md index 0b466a0e0d..aece9f5393 100644 --- a/md/UBERON/46/UBERON_0009846.md +++ b/md/UBERON/46/UBERON_0009846.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009846 * *Label* = embryonic cloacal epithelium - * *Definition* = An epithelium that is part of a embryonic cloaca. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a embryonic cloaca. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cloacal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004585] + * cloacal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004585 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryonic cloaca](../../UBERON/63/UBERON_0000163.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010046.md b/md/UBERON/46/UBERON_0010046.md index 213dcd1042..a69c42dac6 100644 --- a/md/UBERON/46/UBERON_0010046.md +++ b/md/UBERON/46/UBERON_0010046.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010046 * *Label* = entire pharyngeal arch associated mesenchyme - * *Definition* = The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004524[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The sum total of mesenchymal tissue in the pharyngeal arch region. Pharyngeal mesenchyme is undifferentiated, loose connective tissue derived mostly from mesoderm, and also contains ectodermally derived neural crest cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004524, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * associated mesenchyme of pharyngeal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16550] - * entire branchial arch associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pharyngeal arch associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001459] + * associated mesenchyme of pharyngeal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16550 ] + * entire branchial arch associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pharyngeal arch associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001459 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010146.md b/md/UBERON/46/UBERON_0010146.md index 881d1c1459..75a360ac19 100644 --- a/md/UBERON/46/UBERON_0010146.md +++ b/md/UBERON/46/UBERON_0010146.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010146 * *Label* = paraurethral duct - * *Definition* = The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. Like the Skene's glands, they are named after Alexander Skene. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_ducts] + * *Definition* = The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. Like the Skene's glands, they are named after Alexander Skene. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_ducts ] * *Comment* = AO notes: FMA has separate class 'duct of paraurethral gland' (FMA:21860) ## Synonyms - * Skene's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21445] - * duct of Skene's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21860[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * duct of paraurethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21860[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * female prostate duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10668204] - * paraurethral gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21860[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * Skene's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21445 ] + * duct of Skene's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21860, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * duct of paraurethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21860, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * female prostate duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10668204 ] + * paraurethral gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21860, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * periurethral duct - * ductus paraurethrales urethrae femininae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skene%27s_ducts[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus paraurethrales urethrae femininae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skene%27s_ducts, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraurethral gland](../../UBERON/45/UBERON_0010145.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0002485 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010246.md b/md/UBERON/46/UBERON_0010246.md index 7b7abec69a..eb8b549a62 100644 --- a/md/UBERON/46/UBERON_0010246.md +++ b/md/UBERON/46/UBERON_0010246.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010246 * *Label* = choroidal guanine tapetum - * *Definition* = A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum#Classification[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum#Classification, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: elasmobranchii (skates, rays, and sharks) and chimaeras[WP] ## Synonyms @@ -33,8 +33,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The elasmobranch tapetum in Squalus and Scyliorhinus con- sists of sheets of 1213 superposed guanine crystals in the choroid. * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7778 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7864 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010546.md b/md/UBERON/46/UBERON_0010546.md index bab4b13ac8..c8c2b7827b 100644 --- a/md/UBERON/46/UBERON_0010546.md +++ b/md/UBERON/46/UBERON_0010546.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010546 * *Label* = metapodial skeleton - * *Definition* = Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * metacarpal/metatarsal skeleton - * metapodial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005025] - * metapodium skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * skeletal parts of metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * metapodial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005025 ] + * metapodium skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * skeletal parts of metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * skeleton of metapodium - * metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005025[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005025, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [metapodium region](../../UBERON/77/UBERON_0009877.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Endochondral bone complex located between the mesopodium and the acropodium and consisting of the metacarpals or metatarsals.[VSAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: connected_to subdivision of skeleton (UBERON:0010912)[VSAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010746.md b/md/UBERON/46/UBERON_0010746.md index f8be12c3f5..a9240b755b 100644 --- a/md/UBERON/46/UBERON_0010746.md +++ b/md/UBERON/46/UBERON_0010746.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010746 * *Label* = iliac blade - * *Definition* = The extension of the ilium above the level of the acetabulum. Attachment site for both hindlimb and caudal musculature. Medially is the site of attachment of the sacral ribs, where these exist[PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = The extension of the ilium above the level of the acetabulum. Attachment site for both hindlimb and caudal musculature. Medially is the site of attachment of the sacral ribs, where these exist[PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Taxon notes: Often dorsally expanded in amniotes[ad]. ## Synonyms - * a. ossis ilii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wing_of_ilium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ala of ilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42826] - * ala ossis ilii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wing_of_ilium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ilium ala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42826] + * a. ossis ilii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wing_of_ilium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ala of ilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42826 ] + * ala ossis ilii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wing_of_ilium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ilium ala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42826 ] * wing of ilium - * wing of the ilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wing_of_ilium] + * wing of the ilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wing_of_ilium ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010846.md b/md/UBERON/46/UBERON_0010846.md index ca5429a40a..ed3094f44d 100644 --- a/md/UBERON/46/UBERON_0010846.md +++ b/md/UBERON/46/UBERON_0010846.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010846 * *Label* = radius pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a radius bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a radius bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: still to decide whether this is a distinct pre-cartilage condensation ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0010946.md b/md/UBERON/46/UBERON_0010946.md index a8d2414832..40c70d6bfb 100644 --- a/md/UBERON/46/UBERON_0010946.md +++ b/md/UBERON/46/UBERON_0010946.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010946 * *Label* = occipitofrontalis muscle - * *Definition* = The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. Some sources consider the occipitofrontalis to be a structure consisting of two distinct muscles, the Frontalis and the occipitalis. However, Terminologia Anatomica currently classifies it as a single muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitofrontalis_muscle] + * *Definition* = The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. Some sources consider the occipitofrontalis to be a structure consisting of two distinct muscles, the Frontalis and the occipitalis. However, Terminologia Anatomica currently classifies it as a single muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitofrontalis_muscle ] * *Comment* = zone of muscle in FMA ## Synonyms - * epicranius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitofrontalis_muscle] - * musculus occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitofrontalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitofrontalis_muscle] + * epicranius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitofrontalis_muscle ] + * musculus occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitofrontalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitofrontalis_muscle ] ## Cross-references * FMA:9624 * SCTID:361811007 - * UMLS:C1518531 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Occipito-frontalis_Muscle] + * UMLS:C1518531 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Occipito-frontalis_Muscle ] * Wikipedia:Occipitofrontalis_muscle * http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png * ncithesaurus:Occipito-frontalis_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011146.md b/md/UBERON/46/UBERON_0011146.md index d3ed8ac388..a3c7921b7c 100644 --- a/md/UBERON/46/UBERON_0011146.md +++ b/md/UBERON/46/UBERON_0011146.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011146 * *Label* = silk gland - * *Definition* = Any of the glands in silk-spinning insects and spiders that secrete a protein liquid that hardens into silk on exposure to air. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001250] + * *Definition* = Any of the glands in silk-spinning insects and spiders that secrete a protein liquid that hardens into silk on exposure to air. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001250 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [produces](../../RO/00/RO_0003000.md) some [silk](../../UBERON/45/UBERON_0012245.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011246.md b/md/UBERON/46/UBERON_0011246.md index 2bbbb3d3ca..e49bba7f88 100644 --- a/md/UBERON/46/UBERON_0011246.md +++ b/md/UBERON/46/UBERON_0011246.md @@ -8,10 +8,10 @@ ## Synonyms * procoracoid process - * anterior coracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * anterior coracoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * anterior coracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * anterior coracoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * precoracoid - * precoracoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * precoracoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * procoracoid ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Kardong states that the procoracoid (or the anterior part of the procoracoid) is homologous to the coracoid, but this is controversial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011346.md b/md/UBERON/46/UBERON_0011346.md index 528dc50a59..ad3401ecd0 100644 --- a/md/UBERON/46/UBERON_0011346.md +++ b/md/UBERON/46/UBERON_0011346.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011346 * *Label* = palatine raphe - * *Definition* = a raphe running across the palate, from the palatine uvula to the incisive papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_raphe] + * *Definition* = a raphe running across the palate, from the palatine uvula to the incisive papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_raphe ] * *Comment* = AO notes: isa anatomical line in FMA ## Synonyms - * raphe palati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_raphe] + * raphe palati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_raphe ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011346 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011646.md b/md/UBERON/46/UBERON_0011646.md index 813af738a0..52924b79f5 100644 --- a/md/UBERON/46/UBERON_0011646.md +++ b/md/UBERON/46/UBERON_0011646.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011846.md b/md/UBERON/46/UBERON_0011846.md index 50aeb531de..37a5e97404 100644 --- a/md/UBERON/46/UBERON_0011846.md +++ b/md/UBERON/46/UBERON_0011846.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011846 * *Label* = acinus of sebaceous gland - * *Definition* = An acinus that is part of a sebaceous gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a sebaceous gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sebaceous gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59657] + * sebaceous gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59657 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011846 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0011946.md b/md/UBERON/46/UBERON_0011946.md index ccd7996ea6..046967f632 100644 --- a/md/UBERON/46/UBERON_0011946.md +++ b/md/UBERON/46/UBERON_0011946.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011946 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0012246.md b/md/UBERON/46/UBERON_0012246.md index e45aca1e24..dbe8c557f4 100644 --- a/md/UBERON/46/UBERON_0012246.md +++ b/md/UBERON/46/UBERON_0012246.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012246 * *Label* = thyroid follicular lumen - * *Definition* = A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_lumen] + * *Definition* = A follicular lumen is the closed cavity within a follicle of the thyroid gland. It is surrounded by follicular cells and filled with colloid, a concentrated solution of thyroglobulin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_lumen ] ## Synonyms - * lumen of thyroid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68829] - * thyroid follicle lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68829] - * thyroid follicular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68829] - * follicular lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Follicular_lumen] + * lumen of thyroid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68829 ] + * thyroid follicle lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68829 ] + * thyroid follicular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68829 ] + * follicular lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Follicular_lumen ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [thyroid follicle](../../UBERON/05/UBERON_0005305.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012246 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0012446.md b/md/UBERON/46/UBERON_0012446.md index 23a1194f00..cfa630d890 100644 --- a/md/UBERON/46/UBERON_0012446.md +++ b/md/UBERON/46/UBERON_0012446.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012446 * *Label* = obsolete cloacal spur - * *Definition* = retained pelvic vestiges found in birds. They are generally used in courtship and are more pronounced in males than females. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikivet.net] + * *Definition* = retained pelvic vestiges found in birds. They are generally used in courtship and are more pronounced in males than females. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikivet.net ] * *Comment* = Obsoleted as lacks support in literature ## Synonyms @@ -26,9 +26,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012446 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_0012646.md b/md/UBERON/46/UBERON_0012646.md index 9f06cc0ff3..40be908bff 100644 --- a/md/UBERON/46/UBERON_0012646.md +++ b/md/UBERON/46/UBERON_0012646.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0013146.md b/md/UBERON/46/UBERON_0013146.md index 961f824198..ed495064c7 100644 --- a/md/UBERON/46/UBERON_0013146.md +++ b/md/UBERON/46/UBERON_0013146.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013146 * *Label* = venous system of brain - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:20557782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:20566102] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:20557782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:20566102 ] ## Synonyms - * brain venous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001328] + * brain venous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001328 ] * cranial venous system ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013146 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0013546.md b/md/UBERON/46/UBERON_0013546.md index 4ea0eb6bf4..74854cdbd1 100644 --- a/md/UBERON/46/UBERON_0013546.md +++ b/md/UBERON/46/UBERON_0013546.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013546 * *Label* = Brodmann (1909) area 15 - * *Definition* = Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_15] + * *Definition* = Brodmann Area 15 is one of Brodmann's subdivisions of the cerebral cortex in the brain. Area 15 was defined by Brodmann in the guenon monkey, but he found no equivalent structure in humans. However, functional imaging experiments have found structures that may be homologous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_15 ] ## Synonyms - * B09-15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1746] - * Brodmann (1909) area 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1746] - * Brodmann area 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68612] - * area 15 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1746] - * B09-15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 15 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1010] - * area 15 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1010] - * brodmann's area 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1010] - * insula ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1010[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1746 ] + * Brodmann (1909) area 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1746 ] + * Brodmann area 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68612 ] + * area 15 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1746 ] + * B09-15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 15 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1010 ] + * area 15 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1010 ] + * brodmann's area 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1010 ] + * insula ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1010, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:68612 * NIF_GrossAnatomy:birnlex_1746 - * NeuroNames:1010 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1746] + * NeuroNames:1010 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1746 ] * Wikipedia:Brodmann_area_15 ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013546 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0013646.md b/md/UBERON/46/UBERON_0013646.md index 8f4a39f82e..5b578eec37 100644 --- a/md/UBERON/46/UBERON_0013646.md +++ b/md/UBERON/46/UBERON_0013646.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013646 * *Label* = buccal nerve - * *Definition* = The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_nerve] + * *Definition* = The buccal nerve (also called the long buccal nerve) is a nerve in the face. It is a branch of the mandibular nerve (which is itself a branch of the trigeminal nerve) and transmits sensory information from skin over the buccal membrane (in general, the cheek) and from the second and third molar teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_nerve ] ## Synonyms - * buccinator nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53066] - * long buccal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53066] - * buccinator branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_nerve] - * long buccal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_nerve] + * buccinator nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53066 ] + * long buccal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53066 ] + * buccinator branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_nerve ] + * long buccal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_nerve ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0013746.md b/md/UBERON/46/UBERON_0013746.md index d741749036..f59c6227b7 100644 --- a/md/UBERON/46/UBERON_0013746.md +++ b/md/UBERON/46/UBERON_0013746.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013746 * *Label* = basibranchial element - * *Definition* = Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basibranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000170] - * basibranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000170[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * basibranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000170[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * basibranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000170 ] + * basibranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000170, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * basibranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000170, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * copula 1 - * copula I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000686] + * copula I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000686 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue[http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013746 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0014446.md b/md/UBERON/46/UBERON_0014446.md index df786efd7e..942419e556 100644 --- a/md/UBERON/46/UBERON_0014446.md +++ b/md/UBERON/46/UBERON_0014446.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014446 * *Label* = acetabular notch - * *Definition* = The acetabulum presents below a deep notch, the acetabular notch, which is continuous with a circular non-articular depression, the acetabular fossa, at the bottom of the cavity: this depression is perforated by numerous apertures, and lodges a mass of fat. The notch is converted into a by the transverse ligament; through the foramen nutrient vessels and nerves enter the joint; the margins of the notch serve for the attachment of the ligament of the head of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_notch] + * *Definition* = The acetabulum presents below a deep notch, the acetabular notch, which is continuous with a circular non-articular depression, the acetabular fossa, at the bottom of the cavity: this depression is perforated by numerous apertures, and lodges a mass of fat. The notch is converted into a by the transverse ligament; through the foramen nutrient vessels and nerves enter the joint; the margins of the notch serve for the attachment of the ligament of the head of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_notch ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014446 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0014646.md b/md/UBERON/46/UBERON_0014646.md index c3f99ee3bf..990dd4d71e 100644 --- a/md/UBERON/46/UBERON_0014646.md +++ b/md/UBERON/46/UBERON_0014646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014646 * *Label* = nucleus K - * *Definition* = A nucleus present in the ventral tegmentum of skates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A nucleus present in the ventral tegmentum of skates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014646 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_0015046.md b/md/UBERON/46/UBERON_0015046.md index d158f96d00..c1840176ca 100644 --- a/md/UBERON/46/UBERON_0015046.md +++ b/md/UBERON/46/UBERON_0015046.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015046 * *Label* = manual digit 4 metacarpus endochondral element - * *Definition* = A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 4 metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 4 metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 4 metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 4 metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [manual digit 4 metacarpus cartilage element](../../UBERON/73/UBERON_0010573.md)or[manual digit 4 metacarpus pre-cartilage condensation](../../UBERON/68/UBERON_0010568.md)or[metacarpal bone of digit 4](../../UBERON/48/UBERON_0003648.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015046 + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2000246.md b/md/UBERON/46/UBERON_2000246.md index 03a2907547..4177b59952 100644 --- a/md/UBERON/46/UBERON_2000246.md +++ b/md/UBERON/46/UBERON_2000246.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_2000646.md b/md/UBERON/46/UBERON_2000646.md index ecc05696a7..26d3bbb6cf 100644 --- a/md/UBERON/46/UBERON_2000646.md +++ b/md/UBERON/46/UBERON_2000646.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000646 * *Label* = anal fin distal radial bone - * *Definition* = anal fin distal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin distal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * distal anal fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000646] + * distal anal fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000646 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin distal radial element](../../UBERON/46/UBERON_2100646.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2000746.md b/md/UBERON/46/UBERON_2000746.md index 661e7693a7..0a178e4fe2 100644 --- a/md/UBERON/46/UBERON_2000746.md +++ b/md/UBERON/46/UBERON_2000746.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000746 * *Label* = epaxial region somite 28 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2000846.md b/md/UBERON/46/UBERON_2000846.md index b68b94fc39..ee6d3f1a26 100644 --- a/md/UBERON/46/UBERON_2000846.md +++ b/md/UBERON/46/UBERON_2000846.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000846[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000846, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_2000946.md b/md/UBERON/46/UBERON_2000946.md index f9f31c3168..fe4bfa5fdb 100644 --- a/md/UBERON/46/UBERON_2000946.md +++ b/md/UBERON/46/UBERON_2000946.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000946 * *Label* = hypaxial region somite 16 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001046.md b/md/UBERON/46/UBERON_2001046.md index af517eb7cc..1c7c78110a 100644 --- a/md/UBERON/46/UBERON_2001046.md +++ b/md/UBERON/46/UBERON_2001046.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001046 * *Label* = sclerotome somite 8 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001146.md b/md/UBERON/46/UBERON_2001146.md index 2fece71437..c52de48640 100644 --- a/md/UBERON/46/UBERON_2001146.md +++ b/md/UBERON/46/UBERON_2001146.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001146 * *Label* = tooth 1MD - * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 1 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001246.md b/md/UBERON/46/UBERON_2001246.md index b470f35d63..ab70e69da7 100644 --- a/md/UBERON/46/UBERON_2001246.md +++ b/md/UBERON/46/UBERON_2001246.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001246 * *Label* = epibranchial 2 bone - * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and medially with pharyngobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone and medially with pharyngobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001546.md b/md/UBERON/46/UBERON_2001546.md index 8333988e25..e027e8c462 100644 --- a/md/UBERON/46/UBERON_2001546.md +++ b/md/UBERON/46/UBERON_2001546.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001546 * *Label* = neural spine 4 - * *Definition* = Neural spine that is associated with the fourth vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural spine that is associated with the fourth vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001746.md b/md/UBERON/46/UBERON_2001746.md index 7c5d912ca1..046b15a136 100644 --- a/md/UBERON/46/UBERON_2001746.md +++ b/md/UBERON/46/UBERON_2001746.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001746 * *Label* = dentary replacement tooth trench - * *Definition* = Replacement tooth trench that is located in the dentary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Replacement tooth trench that is located in the dentary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001846.md b/md/UBERON/46/UBERON_2001846.md index a27abac9a5..dade61c88a 100644 --- a/md/UBERON/46/UBERON_2001846.md +++ b/md/UBERON/46/UBERON_2001846.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001846 * *Label* = inter-ventral hypohyal joint - * *Definition* = Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [ceratohyal cartilage](../../UBERON/10/UBERON_0011610.md) and [core#connects](../../ts/core#connects.md) some [ventral hypohyal bone](../../UBERON/00/UBERON_2000300.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2001946.md b/md/UBERON/46/UBERON_2001946.md index bd819a74ac..bcb88bb618 100644 --- a/md/UBERON/46/UBERON_2001946.md +++ b/md/UBERON/46/UBERON_2001946.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001946 * *Label* = mesethmoid-maxillary ligament - * *Definition* = Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2005246.md b/md/UBERON/46/UBERON_2005246.md index 176613efb4..4ad9f3b086 100644 --- a/md/UBERON/46/UBERON_2005246.md +++ b/md/UBERON/46/UBERON_2005246.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005246 * *Label* = obsolete regeneration fibroblast - * *Definition* = Is a fibroblast that differentiates from the de-differentiated cells of the blastema. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Is a fibroblast that differentiates from the de-differentiated cells of the blastema. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * blastemal fibroblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005246] - * blastemal fibroblasts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * blastemal fibroblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005246 ] + * blastemal fibroblasts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/46/UBERON_2005346.md b/md/UBERON/46/UBERON_2005346.md index 785927106b..c7fa92baea 100644 --- a/md/UBERON/46/UBERON_2005346.md +++ b/md/UBERON/46/UBERON_2005346.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005346 * *Label* = extrapancreatic duct - * *Definition* = Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-050623-3] + * *Definition* = Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-050623-3 ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2007046.md b/md/UBERON/46/UBERON_2007046.md index 15fbf39fcf..c5b0dc4da9 100644 --- a/md/UBERON/46/UBERON_2007046.md +++ b/md/UBERON/46/UBERON_2007046.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2100646.md b/md/UBERON/46/UBERON_2100646.md index 83c7e65102..91aefc9923 100644 --- a/md/UBERON/46/UBERON_2100646.md +++ b/md/UBERON/46/UBERON_2100646.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100646 * *Label* = anal fin distal radial element - * *Definition* = Rod-like internal median skeletal support elements of the anal fin, which articulate with the lepidotrichia distally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Rod-like internal median skeletal support elements of the anal fin, which articulate with the lepidotrichia distally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * distal anal fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000646] + * distal anal fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000646 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anal fin radial element](../../UBERON/71/UBERON_2101671.md) and [core#connected_to](../../core#connected/to/core#connected_to.md) some [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal fin pterygiophore](../../UBERON/20/UBERON_2001420.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_2200646.md b/md/UBERON/46/UBERON_2200646.md index 914d5f7921..b49fa27917 100644 --- a/md/UBERON/46/UBERON_2200646.md +++ b/md/UBERON/46/UBERON_2200646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200646 * *Label* = anal fin distal radial cartilage - * *Definition* = anal fin distal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin distal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin distal radial element](../../UBERON/46/UBERON_2100646.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3000446.md b/md/UBERON/46/UBERON_3000446.md index 24707bd256..9a62e7fd12 100644 --- a/md/UBERON/46/UBERON_3000446.md +++ b/md/UBERON/46/UBERON_3000446.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3000646.md b/md/UBERON/46/UBERON_3000646.md index d0155e8325..4e6810f61c 100644 --- a/md/UBERON/46/UBERON_3000646.md +++ b/md/UBERON/46/UBERON_3000646.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000646 * *Label* = margo libera - * *Definition* = Anterior, rounded portion of the corpus of the septomaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior, rounded portion of the corpus of the septomaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3000746.md b/md/UBERON/46/UBERON_3000746.md index d0974fe495..35ca82a250 100644 --- a/md/UBERON/46/UBERON_3000746.md +++ b/md/UBERON/46/UBERON_3000746.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000746 * *Label* = urostyle ridge - * *Definition* = Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Maglia_et_al_2007] + * *Definition* = Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Maglia_et_al_2007 ] ## Synonyms - * crista ossi coccygei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000746] + * crista ossi coccygei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000746 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3000846.md b/md/UBERON/46/UBERON_3000846.md index 482f49edd1..29b92cb323 100644 --- a/md/UBERON/46/UBERON_3000846.md +++ b/md/UBERON/46/UBERON_3000846.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000846 * *Label* = element Y of fore mesopodium - * *Definition* = Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3010146.md b/md/UBERON/46/UBERON_3010146.md index 813bab76fb..e8013919f4 100644 --- a/md/UBERON/46/UBERON_3010146.md +++ b/md/UBERON/46/UBERON_3010146.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010146 * *Label* = lacrimal - * *Definition* = Investing bone associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Investing bone associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms - * ectethmoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010146] + * ectethmoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010146 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3010346.md b/md/UBERON/46/UBERON_3010346.md index b3cc0066ef..fbf7265e51 100644 --- a/md/UBERON/46/UBERON_3010346.md +++ b/md/UBERON/46/UBERON_3010346.md @@ -6,7 +6,7 @@ ## Synonyms - * eye ball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010346] + * eye ball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010346 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_3010746.md b/md/UBERON/46/UBERON_3010746.md index aee715a43d..14bd8e5848 100644 --- a/md/UBERON/46/UBERON_3010746.md +++ b/md/UBERON/46/UBERON_3010746.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_4000146.md b/md/UBERON/46/UBERON_4000146.md index 768d3be701..85066064d0 100644 --- a/md/UBERON/46/UBERON_4000146.md +++ b/md/UBERON/46/UBERON_4000146.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000146 * *Label* = transient cartilaginous element - * *Definition* = Chondrogenic element that is composed of cartilage during development and has the potential to become replaced by another tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Chondrogenic element that is composed of cartilage during development and has the potential to become replaced by another tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * endochondral replacement cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000146] + * endochondral replacement cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000146 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/46/UBERON_4200046.md b/md/UBERON/46/UBERON_4200046.md index 00e0065b02..a4b0386ee5 100644 --- a/md/UBERON/46/UBERON_4200046.md +++ b/md/UBERON/46/UBERON_4200046.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0000047.md b/md/UBERON/47/UBERON_0000047.md index ba38ea310d..ca075aaaa4 100644 --- a/md/UBERON/47/UBERON_0000047.md +++ b/md/UBERON/47/UBERON_0000047.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000047 * *Label* = simple eye - * *Definition* = An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eye#Simple_eyes] + * *Definition* = An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eye#Simple_eyes ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0000347.md b/md/UBERON/47/UBERON_0000347.md index 2281a624b1..f7b04db096 100644 --- a/md/UBERON/47/UBERON_0000347.md +++ b/md/UBERON/47/UBERON_0000347.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000347 * *Label* = myelin sheath - * *Definition* = the insulating envelope that surrounds nerve fibers or axons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003871] + * *Definition* = the insulating envelope that surrounds nerve fibers or axons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003871 ] ## Synonyms - * medullary sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000900] + * medullary sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000900 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:731 * GO:0043209 * MESH:A08.637.600.500 - * UMLS:C0026973 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myelin_Sheath] + * UMLS:C0026973 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myelin_Sheath ] * ncithesaurus:Myelin_Sheath ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0000947.md b/md/UBERON/47/UBERON_0000947.md index d51c20f042..789a999701 100644 --- a/md/UBERON/47/UBERON_0000947.md +++ b/md/UBERON/47/UBERON_0000947.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000947 * *Label* = aorta - * *Definition* = Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorta] + * *Definition* = Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorta ] * *Comment* = Editor notes: This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae. Taxon notes: All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP]. ## Synonyms * trunk of aortic tree * trunk of systemic arterial tree - * dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorta#In_other_animals[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000014[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arteria maxima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorta#In_other_animals, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000014, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arteria maxima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,7 +29,7 @@ * MIAA:0000035 * OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA * SCTID:181298001 - * UMLS:C0003483 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aorta] + * UMLS:C0003483 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aorta ] * VHOG:0001523 * Wikipedia:Aorta * XAO:0003010 @@ -49,7 +49,7 @@ * [great vessel of heart](../../UBERON/68/UBERON_0013768.md) * [part_of](../../BFO/50/BFO_0000050.md) some [systemic arterial system](../../UBERON/71/UBERON_0004571.md) * [part_of](../../BFO/50/BFO_0000050.md) some [aortic system](../../UBERON/91/UBERON_0010191.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) ## Equivalencies @@ -63,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = aortic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001047.md b/md/UBERON/47/UBERON_0001047.md index c73ef63aa9..25a5547e52 100644 --- a/md/UBERON/47/UBERON_0001047.md +++ b/md/UBERON/47/UBERON_0001047.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001047 * *Label* = neural glomerulus - * *Definition* = Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = isa or partof neuropil? TODO. Add to GO-CC? ## Synonyms - * glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005386[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_Subcellular:sao587858733] + * glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005386, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_Subcellular:sao587858733 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:FBbt_00005386 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001147.md b/md/UBERON/47/UBERON_0001147.md index 576caed873..b81034aea2 100644 --- a/md/UBERON/47/UBERON_0001147.md +++ b/md/UBERON/47/UBERON_0001147.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001247.md b/md/UBERON/47/UBERON_0001247.md index 25349dc3bb..da920ab399 100644 --- a/md/UBERON/47/UBERON_0001247.md +++ b/md/UBERON/47/UBERON_0001247.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001247 * *Label* = falciform ligament - * *Definition* = a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Falciform_ligament] + * *Definition* = a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Falciform_ligament ] * *Comment* = In FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament ## Synonyms * falciform ligament of liver * ligamentum falciforme (hepatis) - * ligamentum falciforme hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15823[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum falciforme hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15823, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:15823 * MA:0001622 * SCTID:362705001 - * UMLS:C0230240 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Falciform_Ligament] + * UMLS:C0230240 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Falciform_Ligament ] * VHOG:0000355 * Wikipedia:Falciform_ligament * ncithesaurus:Falciform_Ligament @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [body wall](../../UBERON/09/UBERON_0000309.md) and [attaches_to](../../RO/71/RO_0002371.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [nonskeletal ligament](../../UBERON/45/UBERON_0008845.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001347.md b/md/UBERON/47/UBERON_0001347.md index e1f323f546..cafc911423 100644 --- a/md/UBERON/47/UBERON_0001347.md +++ b/md/UBERON/47/UBERON_0001347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001347 * *Label* = white adipose tissue - * *Definition* = Connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels[MP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-683-40008-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005670] + * *Definition* = Connective tissue consisting of fat-storing cells and arranged in lobular groups or along minor blood vessels[MP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-683-40008-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005670 ] ## Synonyms @@ -11,7 +11,7 @@ * textus adiposus albus * unilocular adipose tissue * white fat - * textus adiposus albus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:White_adipose_tissue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * textus adiposus albus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:White_adipose_tissue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0000058 * MAT:0000199 * MIAA:0000199 - * UMLS:C1704223 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:White_Adipose_Tissue] + * UMLS:C1704223 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:White_Adipose_Tissue ] * Wikipedia:White_adipose_tissue * ncithesaurus:White_Adipose_Tissue @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [white fat cell](../../CL/48/CL_0000448.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Adipose tissue, cells of which contain a single large lipid droplet.[FMA[FMA:FMA]] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001447.md b/md/UBERON/47/UBERON_0001447.md index 28f6a839e9..20b217f7f8 100644 --- a/md/UBERON/47/UBERON_0001447.md +++ b/md/UBERON/47/UBERON_0001447.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001447 * *Label* = tarsal bone - * *Definition* = A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment[Wikipedia:Tarsus_(skeleton)] ## Synonyms - * ankle bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24491] - * bone of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24491] - * bone of tarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24491] - * ossa tarsalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71339[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ossa tarsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71339[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * bony tarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002343] - * hind mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000220] - * tarsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002343] - * tarsus osseus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002343] + * ankle bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24491 ] + * bone of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24491 ] + * bone of tarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24491 ] + * ossa tarsalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71339, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ossa tarsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71339, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * bony tarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002343 ] + * hind mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000220 ] + * tarsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002343 ] + * tarsus osseus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002343 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0000297 * MESH:A02.835.232.300.710 * SCTID:108372004 - * UMLS:C0039316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tarsal_Bone] + * UMLS:C0039316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tarsal_Bone ] * galen:TarsalBone * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png * ncithesaurus:Tarsal_Bone @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001547.md b/md/UBERON/47/UBERON_0001547.md index 2325ba83da..b2c6d162b8 100644 --- a/md/UBERON/47/UBERON_0001547.md +++ b/md/UBERON/47/UBERON_0001547.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001547 * *Label* = small saphenous vein - * *Definition* = The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Small_saphenous_vein] + * *Definition* = The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Small_saphenous_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lesser saphenous vein * short saphenous vein - * vena saphena parva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Small_saphenous_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena saphena parva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Small_saphenous_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:44333 * MA:0002217 * SCTID:181404009 - * UMLS:C0226827 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Short_Saphenous_Vein] + * UMLS:C0226827 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Short_Saphenous_Vein ] * Wikipedia:Small_saphenous_vein * galen:LesserSaphenousVein * http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001647.md b/md/UBERON/47/UBERON_0001647.md index 1131c34c6d..436a162b73 100644 --- a/md/UBERON/47/UBERON_0001647.md +++ b/md/UBERON/47/UBERON_0001647.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001647 * *Label* = facial nerve - * *Definition* = Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_nerve] + * *Definition* = Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Facial nerve [VII] * branchiomeric cranial nerve - * face nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * facial VII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000489] + * face nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * facial VII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000489 ] * facial VII nerve * facial nerve tree - * nerve of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nervus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000664] - * nervus facialis [vii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50868[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nervus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000664 ] + * nervus facialis [vii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50868, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * seventh cranial nerve - * 7n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_827[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 7n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_827, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-VII * cranial nerve VII - * facial nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:7n] - * facial nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:7n] - * nerve VII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:551] - * nervus facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * facial nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:7n ] + * facial nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:7n ] + * nerve VII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:551 ] + * nervus facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,12 +42,12 @@ * MA:0001091 * MESH:A08.800.800.120.250 * NIF_GrossAnatomy:birnlex_827 - * NeuroNames:551 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_827] + * NeuroNames:551 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_827 ] * OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA * SCTID:362460007 * TAO:0000664 - * UMLS:C0015462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_827] - * UMLS:C0015462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Nerve] + * UMLS:C0015462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_827 ] + * UMLS:C0015462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Nerve ] * VHOG:0000706 * Wikipedia:Facial_nerve * XAO:0003094 @@ -74,7 +74,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms @@ -84,8 +84,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Slender nerve composed of branchiomotor and visceral efferent fibers innervating the mouth and various muscles within the jaw. Sensory components innervate the bucccal roof and somatomotor components innervate the depressor musculature and muscle interhyoideus.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001747.md b/md/UBERON/47/UBERON_0001747.md index 6191f55348..e7923fa0fa 100644 --- a/md/UBERON/47/UBERON_0001747.md +++ b/md/UBERON/47/UBERON_0001747.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001747 * *Label* = parenchyma of thyroid gland - * *Definition* = A parenchyma that is part of a thyroid follicle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a thyroid follicle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * parenchyma of thyroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * parenchyma of thyroid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parenchyma of thyroid gland follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thyroid follicle parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thyroid gland follicle parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * parenchyma of thyroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * parenchyma of thyroid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parenchyma of thyroid gland follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thyroid follicle parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thyroid gland follicle parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * thyroid gland parenchyma - * thyroid parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * parenchyma glandulae thyroideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004579] + * thyroid parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * parenchyma glandulae thyroideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004579 ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thyroid gland](../../UBERON/46/UBERON_0002046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001847.md b/md/UBERON/47/UBERON_0001847.md index 9a553b7502..c1753992fb 100644 --- a/md/UBERON/47/UBERON_0001847.md +++ b/md/UBERON/47/UBERON_0001847.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001847 * *Label* = lobule of pinna - * *Definition* = The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ear_lobe] + * *Definition* = The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ear_lobe ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,7 +13,7 @@ * earlobe * lobe of ear * lobule of auricle of ear - * lobulus auriculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60984[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobulus auriculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60984, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pinna lobule * ear lobule * lobule of auricle @@ -23,7 +23,7 @@ * FMA:60984 * MA:0002468 * SCTID:362544006 - * UMLS:C0229315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lobule_of_the_Auricle] + * UMLS:C0229315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lobule_of_the_Auricle ] * Wikipedia:Ear_lobe * ncithesaurus:Lobule_of_the_Auricle @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0001947.md b/md/UBERON/47/UBERON_0001947.md index a18fc23e20..1f2a879c1d 100644 --- a/md/UBERON/47/UBERON_0001947.md +++ b/md/UBERON/47/UBERON_0001947.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001947 * *Label* = red nucleus - * *Definition* = The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Red_nucleus] + * *Definition* = The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Red_nucleus ] * *Comment* = Function notes: in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus. ## Synonyms - * nucleus ruber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000552[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * R [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1478[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lamina A [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:A] - * nucleus rotundus subthalamo-peduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:505[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Red_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber tegmenti (Stilling) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:505[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ruber tegmenti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * red nucleus (Burdach) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:505] + * nucleus ruber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000552, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * R [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1478, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lamina A [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:A ] + * nucleus rotundus subthalamo-peduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:505, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Red_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber tegmenti (Stilling) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:505, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ruber tegmenti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * red nucleus (Burdach) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:505 ] ## Cross-references @@ -31,10 +31,10 @@ * MA:0001063 * MESH:A08.186.211.132.659.822.642 * NIF_GrossAnatomy:birnlex_1478 - * NeuroNames:505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1478] + * NeuroNames:505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1478 ] * SCTID:279287006 * TAO:0000552 - * UMLS:C0034910 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1478] + * UMLS:C0034910 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1478 ] * Wikipedia:Red_nucleus * ZFA:0000552 * http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002047.md b/md/UBERON/47/UBERON_0002047.md index 646fd2d59c..c086a1da2c 100644 --- a/md/UBERON/47/UBERON_0002047.md +++ b/md/UBERON/47/UBERON_0002047.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002047 * *Label* = pontine raphe nucleus - * *Definition* = The Pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_raphe_nucleus] + * *Definition* = The Pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_raphe_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * raphe of pons - * raphe pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68875[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus raphe pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:589[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus raphes pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_raphe_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe (mediana pontina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:589[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * raphe pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68875, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus raphe pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:589, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus raphes pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_raphe_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe (mediana pontina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:589, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * raphe pontis nucleus ## Cross-references @@ -24,8 +24,8 @@ * FMA:68875 * MA:0001022 * NIF_GrossAnatomy:birnlex_1110 - * NeuroNames:589 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1110] - * UMLS:C0175423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1110] + * NeuroNames:589 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1110 ] + * UMLS:C0175423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1110 ] * Wikipedia:Pontine_raphe_nucleus ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002147.md b/md/UBERON/47/UBERON_0002147.md index 890afbc71c..2f5f60d994 100644 --- a/md/UBERON/47/UBERON_0002147.md +++ b/md/UBERON/47/UBERON_0002147.md @@ -7,12 +7,12 @@ ## Synonyms - * nucleus reticularis tegmenti pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72471[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus reticularis tegmenti pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72471, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * reticular tegmental nucleus * reticulotegmental nucleus of pons * tegmental reticular nucleus, pontine gray - * Tegmental reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:TRN] - * reticulotegmental nucleus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RtTg] + * Tegmental reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:TRN ] + * reticulotegmental nucleus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RtTg ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002247.md b/md/UBERON/47/UBERON_0002247.md index 02e80076ac..0190e69e42 100644 --- a/md/UBERON/47/UBERON_0002247.md +++ b/md/UBERON/47/UBERON_0002247.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002247 * *Label* = uterine horn - * *Definition* = The uterine horns are the points where the uterus and the fallopian tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_horns] + * *Definition* = The uterine horns are the points where the uterus and the fallopian tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_horns ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cornu uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004235] + * cornu uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004235 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002347.md b/md/UBERON/47/UBERON_0002347.md index 419b0db80d..746843e8d8 100644 --- a/md/UBERON/47/UBERON_0002347.md +++ b/md/UBERON/47/UBERON_0002347.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002347 * *Label* = thoracic vertebra - * *Definition* = In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_vertebrae] + * *Definition* = In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_vertebrae ] ## Synonyms * dorsal vertebra - * thorax vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebra of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thorax vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebra of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * vertebra thoracica ## Cross-references @@ -21,7 +21,7 @@ * MESH:A02.835.232.834.892 * OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA * SCTID:181821009 - * UMLS:C0039987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Vertebra] + * UMLS:C0039987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Vertebra ] * Wikipedia:Thoracic_vertebrae * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png * ncithesaurus:Thoracic_Vertebra @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic region of vertebral column](../../UBERON/73/UBERON_0006073.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002447.md b/md/UBERON/47/UBERON_0002447.md index 7c27fab070..e857b6852c 100644 --- a/md/UBERON/47/UBERON_0002447.md +++ b/md/UBERON/47/UBERON_0002447.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002447 * *Label* = palatine gland - * *Definition* = The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_glands] + * *Definition* = The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_glands ] ## Synonyms @@ -16,7 +16,7 @@ * FMA:59795 * MA:0001584 * SCTID:13604002 - * UMLS:C0930557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palatine_Salivary_Gland] + * UMLS:C0930557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palatine_Salivary_Gland ] * Wikipedia:Palatine_glands * ncithesaurus:Palatine_Salivary_Gland @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002547.md b/md/UBERON/47/UBERON_0002547.md index 4a261974bf..29d4d4010d 100644 --- a/md/UBERON/47/UBERON_0002547.md +++ b/md/UBERON/47/UBERON_0002547.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002547 * *Label* = tadpole - * *Definition* = An an organism at the larval stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An an organism at the larval stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [tadpole stage](../../UBERON/49/UBERON_0009849.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002647.md b/md/UBERON/47/UBERON_0002647.md index b44f678eb5..c19ff38cd3 100644 --- a/md/UBERON/47/UBERON_0002647.md +++ b/md/UBERON/47/UBERON_0002647.md @@ -6,27 +6,27 @@ ## Synonyms - * dorsomedial thalamic nucleus, magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62161] - * magnocellular mediodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62161] - * magnocellular nucleus of medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62161] - * magnocellular part of dorsomedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62161] - * magnocellular part of mediodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1262] - * nucleus medialis dorsalis, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1262] - * nucleus medialis fibrosus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1262] - * nucleus medialis fibrosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1262] - * pars magnocellularis nuclei mediodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62161[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * MDM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1262[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * magnocellular part of the medial dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:314] - * mediodorsal thalamic nucleus medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MDM] - * mediodorsal thalamic nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MDM] + * dorsomedial thalamic nucleus, magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62161 ] + * magnocellular mediodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62161 ] + * magnocellular nucleus of medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62161 ] + * magnocellular part of dorsomedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62161 ] + * magnocellular part of mediodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1262 ] + * nucleus medialis dorsalis, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1262 ] + * nucleus medialis fibrosus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1262 ] + * nucleus medialis fibrosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1262 ] + * pars magnocellularis nuclei mediodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62161, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * MDM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1262, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * magnocellular part of the medial dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:314 ] + * mediodorsal thalamic nucleus medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MDM ] + * mediodorsal thalamic nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MDM ] ## Cross-references * BAMS:MDM * FMA:62161 * NIF_GrossAnatomy:birnlex_1262 - * NeuroNames:314 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1262] - * UMLS:C0228331 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1262] + * NeuroNames:314 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1262 ] + * UMLS:C0228331 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1262 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002747.md b/md/UBERON/47/UBERON_0002747.md index b158e89baf..cc6c77750b 100644 --- a/md/UBERON/47/UBERON_0002747.md +++ b/md/UBERON/47/UBERON_0002747.md @@ -6,17 +6,17 @@ ## Synonyms - * neodentate portion of dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72539] - * neodentate portion of the dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:684] - * pars neodentata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:684[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * neodentate portion of dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72539 ] + * neodentate portion of the dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:684 ] + * pars neodentata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:684, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:NDt * FMA:72539 * NIF_GrossAnatomy:birnlex_1567 - * NeuroNames:684 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1567] - * UMLS:C0175485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1567] + * NeuroNames:684 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1567 ] + * UMLS:C0175485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1567 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002847.md b/md/UBERON/47/UBERON_0002847.md index f839511b6e..7be07be0ba 100644 --- a/md/UBERON/47/UBERON_0002847.md +++ b/md/UBERON/47/UBERON_0002847.md @@ -6,15 +6,15 @@ ## Synonyms - * third thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6323] - * third thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6323] + * third thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6323 ] + * third thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6323 ] ## Cross-references * EMAPA:25176 * FMA:6323 * NIF_GrossAnatomy:birnlex_2613 - * UMLS:C0501701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2613] + * UMLS:C0501701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2613 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0002947.md b/md/UBERON/47/UBERON_0002947.md index d054391391..f609364984 100644 --- a/md/UBERON/47/UBERON_0002947.md +++ b/md/UBERON/47/UBERON_0002947.md @@ -6,8 +6,8 @@ ## Synonyms - * nucleus ventralis oralis, pars medialis (Dewulf) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2205[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * operculum frontale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Operculum_%28brain%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus ventralis oralis, pars medialis (Dewulf) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2205, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * operculum frontale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Operculum_%28brain%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,9 +15,9 @@ * BAMS:fro * FMA:74886 * NIF_GrossAnatomy:birnlex_751 - * NeuroNames:2205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_751] + * NeuroNames:2205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_751 ] * SCTID:362352005 - * UMLS:C0149547 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_751] + * UMLS:C0149547 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_751 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003047.md b/md/UBERON/47/UBERON_0003047.md index a35a4da693..c1c72d5bf1 100644 --- a/md/UBERON/47/UBERON_0003047.md +++ b/md/UBERON/47/UBERON_0003047.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003047 * *Label* = regional part of pretectal region - * *Definition* = A regional part of brain that is part of a pretectal region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a pretectal region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pretectal region segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74519] - * segment of pretectal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_993] + * pretectal region segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74519 ] + * segment of pretectal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_993 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003147.md b/md/UBERON/47/UBERON_0003147.md index 2d27e94543..1d3e0c115e 100644 --- a/md/UBERON/47/UBERON_0003147.md +++ b/md/UBERON/47/UBERON_0003147.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003147 * *Label* = obsolete peritreme - * *Definition* = That part of the integument of an insect which surrounds the spiracles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.answers.com/topic/peritreme] + * *Definition* = That part of the integument of an insect which surrounds the spiracles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.answers.com/topic/peritreme ] * *Comment* = arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell ## Synonyms - * rim [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00003121] + * rim [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00003121 ] ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003121 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000712 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003147 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_0003247.md b/md/UBERON/47/UBERON_0003247.md index 1eb6634889..b4704c3405 100644 --- a/md/UBERON/47/UBERON_0003247.md +++ b/md/UBERON/47/UBERON_0003247.md @@ -3,74 +3,74 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003247 * *Label* = epithelium of forearm - * *Definition* = An epithelium that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antebrachial region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antebrachial region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antebrachial region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -91,7 +91,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms @@ -99,8 +99,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003447.md b/md/UBERON/47/UBERON_0003447.md index 1f1527eb7a..15ab0597f7 100644 --- a/md/UBERON/47/UBERON_0003447.md +++ b/md/UBERON/47/UBERON_0003447.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003447 * *Label* = digit nerve of manus - * *Definition* = A nerve that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of hand nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000625] - * nerve of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digit of hand nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000625 ] + * nerve of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003547.md b/md/UBERON/47/UBERON_0003547.md index ba00ab81fc..f741e58689 100644 --- a/md/UBERON/47/UBERON_0003547.md +++ b/md/UBERON/47/UBERON_0003547.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003547 * *Label* = brain meninx - * *Definition* = A meninx that is part of a brain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a brain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brain meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninx of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brain meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninx of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the brain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003647.md b/md/UBERON/47/UBERON_0003647.md index efb5d466f0..700862efc2 100644 --- a/md/UBERON/47/UBERON_0003647.md +++ b/md/UBERON/47/UBERON_0003647.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003647 * *Label* = metacarpal bone of digit 3 - * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 3[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Third_metacarpal_bone] + * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 3[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Third_metacarpal_bone ] ## Synonyms - * 3 rd digit of hand metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd digit of hand metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 3 rd finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 3 rd digit of hand metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd digit of hand metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 3 rd finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * finger 3 metacarpus - * hand digit 3 metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 3 metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hand digit 3 metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 3 metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual digit 3 metacarpus * metacarpal 3 - * metacarpal III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23901] - * metacarpal bone digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001366] - * metacarpal bone of 3 rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of 3 rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 3 rd digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 3 rd finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of hand digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23901] - * forelimb cannon bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpal III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23901 ] + * metacarpal bone digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001366 ] + * metacarpal bone of 3 rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of 3 rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 3 rd digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 3 rd finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of hand digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23901 ] + * forelimb cannon bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -38,7 +38,7 @@ * FMA:23901 * MA:0001366 * SCTID:263400000 - * UMLS:C1708989 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone_Digit_3] + * UMLS:C1708989 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone_Digit_3 ] * Wikipedia:Third_metacarpal_bone * ncithesaurus:Metacarpal_Bone_Digit_3 @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of manual digit 3](../../UBERON/29/UBERON_0004329.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The third metacarpal bone (metacarpal bone of the middle finger) is a little smaller than the second. The dorsal aspect of its base presents on its radial side a pyramidal eminence, the styloid process, which extends upward behind the capitate; immediately distal to this is a rough surface for the attachment of the extensor carpi radialis brevis muscle. The carpal articular facet is concave behind, flat in front, and articulates with the capitate. On the radial side is a smooth, concave facet for articulation with the second metacarpal, and on the ulnar side two small oval facets for the fourth metacarpal[Wikipedia:Third_metacarpal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003847.md b/md/UBERON/47/UBERON_0003847.md index 747c5f9014..d72d27c523 100644 --- a/md/UBERON/47/UBERON_0003847.md +++ b/md/UBERON/47/UBERON_0003847.md @@ -14,7 +14,7 @@ * EHDAA:7372 * EMAPA:18622 * MA:0002066 - * UMLS:C1711424 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Artery] + * UMLS:C1711424 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Artery ] * VHOG:0001366 * ncithesaurus:Thyroid_Artery @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the external carotid which supplies blood to the thyroid gland.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of external carotid (AAO:0010218)[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0003947.md b/md/UBERON/47/UBERON_0003947.md index 449924f8bf..dad5cf178e 100644 --- a/md/UBERON/47/UBERON_0003947.md +++ b/md/UBERON/47/UBERON_0003947.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003947 * *Label* = brain ventricle/choroid plexus - * *Definition* = the brain ventricles or their associated choroid plexuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002200] + * *Definition* = the brain ventricles or their associated choroid plexuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002200 ] * *Comment* = TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [brain ventricle](../../UBERON/86/UBERON_0004086.md)or[choroid plexus](../../UBERON/86/UBERON_0001886.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004047.md b/md/UBERON/47/UBERON_0004047.md index 111690ac60..8c1b89134c 100644 --- a/md/UBERON/47/UBERON_0004047.md +++ b/md/UBERON/47/UBERON_0004047.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004047 * *Label* = basal cistern - * *Definition* = the enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009029] + * *Definition* = the enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009029 ] ## Synonyms - * cisterna interpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19056] - * cisterna interpeduncularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19149] - * interpeduncular cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19056] - * interpeduncular cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19149] + * cisterna interpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19056 ] + * cisterna interpeduncularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19149 ] + * interpeduncular cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19056 ] + * interpeduncular cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19149 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004147.md b/md/UBERON/47/UBERON_0004147.md index 23f40e551e..af9132499e 100644 --- a/md/UBERON/47/UBERON_0004147.md +++ b/md/UBERON/47/UBERON_0004147.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004147 * *Label* = cardiac Purkinje fiber - * *Definition* = The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003165] + * *Definition* = The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003165 ] ## Synonyms - * heart Purkinje fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001735] + * heart Purkinje fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001735 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004247.md b/md/UBERON/47/UBERON_0004247.md index 65446a8d2f..d80e31bf55 100644 --- a/md/UBERON/47/UBERON_0004247.md +++ b/md/UBERON/47/UBERON_0004247.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004247 * *Label* = back bone - * *Definition* = A bone that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class may be obsoleted. See: https://sourceforge.net/tracker/?func=detail&aid=3611652&group_id=76834&atid=1205376 ## Synonyms - * back bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * back bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004347.md b/md/UBERON/47/UBERON_0004347.md index 9ab3c79bc3..4ceafb4272 100644 --- a/md/UBERON/47/UBERON_0004347.md +++ b/md/UBERON/47/UBERON_0004347.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004347 * *Label* = limb bud - * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a limb. The limb bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005650[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limb_bud[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a limb. The limb bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005650, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limb_bud, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm ## Synonyms - * limb buds [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * limbbud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060174] - * gemmae membrorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limb_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * limb buds [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * limbbud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060174 ] + * gemmae membrorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limb_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * BTO:0001640 * GAID:1307 * MESH:A16.254.462 - * UMLS:C0282505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Limb_Bud] + * UMLS:C0282505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Limb_Bud ] * Wikipedia:Limb_bud * XAO:0003161 * ncithesaurus:Limb_Bud @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Early outgrowth of presumptive limb.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004447.md b/md/UBERON/47/UBERON_0004447.md index b9070166d6..9063285160 100644 --- a/md/UBERON/47/UBERON_0004447.md +++ b/md/UBERON/47/UBERON_0004447.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004447 * *Label* = proximal epiphysis of phalanx - * *Definition* = A proximal epiphysis that is part of a phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [phalanx](../../UBERON/21/UBERON_0003221.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004547.md b/md/UBERON/47/UBERON_0004547.md index 1b8e4af257..cbfe851446 100644 --- a/md/UBERON/47/UBERON_0004547.md +++ b/md/UBERON/47/UBERON_0004547.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004547 * *Label* = decidua capsularis - * *Definition* = Endometrium that covers the implanted blastocyst. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] + * *Definition* = The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012530 ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:86478 * MA:0002906 * SCTID:255498003 - * UMLS:C0230964 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Decidua_Capsularis] + * UMLS:C0230964 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Decidua_Capsularis ] * ncithesaurus:Decidua_Capsularis ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004647.md b/md/UBERON/47/UBERON_0004647.md index 0685e25ed9..6ff9f482e8 100644 --- a/md/UBERON/47/UBERON_0004647.md +++ b/md/UBERON/47/UBERON_0004647.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004647 * *Label* = liver lobule - * *Definition* = a small division of the liver defined at the histological scale, the functional unit of which is the hepatic acinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lobules_of_liver] + * *Definition* = a small division of the liver defined at the histological scale, the functional unit of which is the hepatic acinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lobules_of_liver ] * *Comment* = should not be confused with the anatomic lobes of the liver (caudate lobe, quadrate lobe, left lobe, and right lobe), or any of the functional lobe classification systems.[WP] ## Synonyms - * hepatic lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14471] - * lobuli hepatici [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lobulus hepaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14471[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobules of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lobules_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lobuli hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lobules_of_liver[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hepatic lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14471 ] + * lobuli hepatici [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lobulus hepaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14471, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobules of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lobules_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lobuli hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lobules_of_liver, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14471 * MA:0002494 * SCTID:362194004 - * UMLS:C0227518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Lobule] + * UMLS:C0227518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Lobule ] * Wikipedia:Lobules_of_liver * ncithesaurus:Hepatic_Lobule @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004747.md b/md/UBERON/47/UBERON_0004747.md index af07f191c3..20cf08f723 100644 --- a/md/UBERON/47/UBERON_0004747.md +++ b/md/UBERON/47/UBERON_0004747.md @@ -7,10 +7,10 @@ ## Synonyms - * acrinial@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000595] - * acrinioste@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000595] - * supraoccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001150] - * supraoccipital@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000595] + * acrinial@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000595 ] + * acrinioste@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000595 ] + * supraoccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001150 ] + * supraoccipital@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000595 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [supraoccipital endochondral element](../../UBERON/15/UBERON_0015015.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005237 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0004947.md b/md/UBERON/47/UBERON_0004947.md index 818632e6af..c38fabb560 100644 --- a/md/UBERON/47/UBERON_0004947.md +++ b/md/UBERON/47/UBERON_0004947.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004947 * *Label* = submucosa of right main bronchus - * *Definition* = A submucosa that is part of a right main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a right main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right main bronchial submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13139] - * right main bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right principal bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of right bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * right bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right main bronchial submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13139 ] + * right main bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right principal bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of right bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right main bronchus](../../UBERON/77/UBERON_0002177.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0005047.md b/md/UBERON/47/UBERON_0005047.md index ffe9cce142..6ffbe22034 100644 --- a/md/UBERON/47/UBERON_0005047.md +++ b/md/UBERON/47/UBERON_0005047.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005047 * *Label* = mucosa of vocal fold - * *Definition* = A mucosa that is part of a vocal cord [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a vocal cord [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of glottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64017] - * mucosa of organ of true vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of true vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of true vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of true vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vocal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * true vocal cord mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * true vocal cord mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * true vocal cord mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * true vocal cord organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vocal cord mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vocal cord mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vocal cord mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vocal cord organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vocal fold mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64017] + * mucosa of glottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64017 ] + * mucosa of organ of true vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of true vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of true vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of true vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vocal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * true vocal cord mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * true vocal cord mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * true vocal cord mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * true vocal cord organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vocal cord mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vocal cord mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vocal cord mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vocal cord organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vocal fold mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64017 ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [laryngeal vocal fold](../../UBERON/06/UBERON_0003706.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0005147.md b/md/UBERON/47/UBERON_0005147.md index d238406b4a..de8d79fcf2 100644 --- a/md/UBERON/47/UBERON_0005147.md +++ b/md/UBERON/47/UBERON_0005147.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005147 * *Label* = metanephric renal vesicle - * *Definition* = The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072283] + * *Definition* = The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072283 ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [renal vesicle](../../UBERON/09/UBERON_0004209.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0005347.md b/md/UBERON/47/UBERON_0005347.md index 3ed20002ea..3aa057af60 100644 --- a/md/UBERON/47/UBERON_0005347.md +++ b/md/UBERON/47/UBERON_0005347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005347 * *Label* = copula pyramidis - * *Definition* = .[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010000] + * *Definition* = .[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010000 ] * *Comment* = This is a structure present in rodents and is not present in humans. The cerebellum hemisphere structure and lobulation is dramatically different between these species. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0005447.md b/md/UBERON/47/UBERON_0005447.md index 0a7959c49c..5e56e0d7e0 100644 --- a/md/UBERON/47/UBERON_0005447.md +++ b/md/UBERON/47/UBERON_0005447.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0006081 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0006082 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005447 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_0005647.md b/md/UBERON/47/UBERON_0005647.md index d54aae3955..448b06d91d 100644 --- a/md/UBERON/47/UBERON_0005647.md +++ b/md/UBERON/47/UBERON_0005647.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005647 * *Label* = manual digit 4 epithelium - * *Definition* = An epithelium that is part of a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 4 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 4 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 4 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 4 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0005847.md b/md/UBERON/47/UBERON_0005847.md index 2690d4a920..c37dd898e1 100644 --- a/md/UBERON/47/UBERON_0005847.md +++ b/md/UBERON/47/UBERON_0005847.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005847 * *Label* = thoracic spinal cord lateral column - * *Definition* = A subdivision of spinal cord lateral column that is part of a thoracic spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord lateral column that is part of a thoracic spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * NIF_GrossAnatomy:birnlex_1439 - * UMLS:C0228635 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1439] + * UMLS:C0228635 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1439 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic spinal cord](../../UBERON/38/UBERON_0003038.md) and [subdivision of spinal cord lateral column](../../UBERON/78/UBERON_0006078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006047.md b/md/UBERON/47/UBERON_0006047.md index db11e03648..7b87ca326e 100644 --- a/md/UBERON/47/UBERON_0006047.md +++ b/md/UBERON/47/UBERON_0006047.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006047 * *Label* = interdigital region between pedal digits 4 and 5 - * *Definition* = An interdigital region that adjacent_to a pedal digit 4 and adjacent_to a pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that adjacent_to a pedal digit 4 and adjacent_to a pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) and [adjacent to](../../RO/20/RO_0002220.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) and [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006247.md b/md/UBERON/47/UBERON_0006247.md index bb0ddc3f7c..cd2cc64852 100644 --- a/md/UBERON/47/UBERON_0006247.md +++ b/md/UBERON/47/UBERON_0006247.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [iliac endochondral element](../../UBERON/54/UBERON_0015054.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006347.md b/md/UBERON/47/UBERON_0006347.md index 706e159938..cc1e6f9f7c 100644 --- a/md/UBERON/47/UBERON_0006347.md +++ b/md/UBERON/47/UBERON_0006347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006347 * *Label* = communicating artery - * *Definition* = An artery that connects two larger arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Communicating_Artery] + * *Definition* = An artery that connects two larger arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Communicating_Artery ] * *Comment* = Grouping for anterior and posterior ## Synonyms @@ -13,7 +13,7 @@ * EMAPA:18598 * MA:0001938 - * UMLS:C1707451 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Communicating_Artery] + * UMLS:C1707451 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Communicating_Artery ] * ncithesaurus:Communicating_Artery ## Subsets @@ -28,11 +28,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006447.md b/md/UBERON/47/UBERON_0006447.md index 675756a387..6b54978bd5 100644 --- a/md/UBERON/47/UBERON_0006447.md +++ b/md/UBERON/47/UBERON_0006447.md @@ -6,16 +6,16 @@ ## Synonyms - * L5 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71191] - * L5 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1251] - * fifth lumbar spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1251] + * L5 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71191 ] + * L5 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1251 ] + * fifth lumbar spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1251 ] ## Cross-references * FMA:71191 * NIF_GrossAnatomy:birnlex_1251 * SCTID:278775008 - * UMLS:C0457871 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1251] + * UMLS:C0457871 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1251 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006647.md b/md/UBERON/47/UBERON_0006647.md index 6bb4715d71..d9f092501b 100644 --- a/md/UBERON/47/UBERON_0006647.md +++ b/md/UBERON/47/UBERON_0006647.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006647 * *Label* = adventitia of ductus deferens - * *Definition* = An adventitia that is part of a vas deferens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adventitia that is part of a vas deferens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adventitia of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238] - * adventitia of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238] - * adventitia of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238] - * deferent ductal adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238] - * tunica adventitia (ductus deferens) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238] - * tunica adventitia ductus deferentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19238[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adventitia of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238 ] + * adventitia of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238 ] + * adventitia of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238 ] + * deferent ductal adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238 ] + * tunica adventitia (ductus deferens) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238 ] + * tunica adventitia ductus deferentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19238, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adventitia](../../UBERON/42/UBERON_0005742.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006847.md b/md/UBERON/47/UBERON_0006847.md index abf56b72ff..dfb8648734 100644 --- a/md/UBERON/47/UBERON_0006847.md +++ b/md/UBERON/47/UBERON_0006847.md @@ -6,7 +6,7 @@ ## Synonyms - * commissura cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000490] + * commissura cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000490 ] * commissure of cerebellum ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [left hemisphere of cerebellum](../../UBERON/89/UBERON_0014889.md) and [connects](../../ts/core#connects.md) some [right hemisphere of cerebellum](../../UBERON/90/UBERON_0014890.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0006947.md b/md/UBERON/47/UBERON_0006947.md index d64b945819..cc320eb52f 100644 --- a/md/UBERON/47/UBERON_0006947.md +++ b/md/UBERON/47/UBERON_0006947.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006947 * *Label* = male genital duct - * *Definition* = A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct ## Synonyms - * sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001268] - * sperm ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001268[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001268 ] + * sperm ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001268, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010140 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0007147.md b/md/UBERON/47/UBERON_0007147.md index b68543efbc..e8b2db05c6 100644 --- a/md/UBERON/47/UBERON_0007147.md +++ b/md/UBERON/47/UBERON_0007147.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007147 * *Label* = lumen of midgut - * *Definition* = An anatomical cavity that surrounded_by a midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midgut lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54366] + * midgut lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54366 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0007247.md b/md/UBERON/47/UBERON_0007247.md index 53f263399a..3b127e1722 100644 --- a/md/UBERON/47/UBERON_0007247.md +++ b/md/UBERON/47/UBERON_0007247.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007247 * *Label* = superior olivary nucleus - * *Definition* = A nucleus of brain that is part of a superior olivary complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a superior olivary complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nucleus of superior olivary complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72246] - * superior olivary complex nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72246] - * superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001026] + * nucleus of superior olivary complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72246 ] + * superior olivary complex nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72246 ] + * superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001026 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior olivary complex](../../UBERON/28/UBERON_0002128.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0007347.md b/md/UBERON/47/UBERON_0007347.md index fc77ae14b9..b00b0d14cf 100644 --- a/md/UBERON/47/UBERON_0007347.md +++ b/md/UBERON/47/UBERON_0007347.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007347 * *Label* = hyperpallium - * *Definition* = Birds have a unique pallial structure known as the hyperpallium, once called the hyperstriatum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyperpallium] + * *Definition* = Birds have a unique pallial structure known as the hyperpallium, once called the hyperstriatum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyperpallium ] ## Synonyms - * hyperstriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003400] + * hyperstriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003400 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0007647.md b/md/UBERON/47/UBERON_0007647.md index eefbcf8489..7db4b1a754 100644 --- a/md/UBERON/47/UBERON_0007647.md +++ b/md/UBERON/47/UBERON_0007647.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007647 * *Label* = ectomeninx - * *Definition* = the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/ectomeninx] + * *Definition* = the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/ectomeninx ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0007747.md b/md/UBERON/47/UBERON_0007747.md index f0aa19bcce..1a1d818071 100644 --- a/md/UBERON/47/UBERON_0007747.md +++ b/md/UBERON/47/UBERON_0007747.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007747 * *Label* = metacarpophalangeal joint of manual digit 5 - * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metacarpal bone and connects a proximal phalanx of manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpophalangeal joint of digit 5 - * metacarpophalangeal joint of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35261] - * metacarpophalangeal joint of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35261] - * metacarpo-phalangeal joint of digit 5 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25069] - * metacarpophalangeal joint of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35261[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpophalangeal joint of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35261 ] + * metacarpophalangeal joint of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35261 ] + * metacarpo-phalangeal joint of digit 5 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25069 ] + * metacarpophalangeal joint of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35261, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manual digit 5](../../UBERON/31/UBERON_0004331.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0008247.md b/md/UBERON/47/UBERON_0008247.md index 662984d176..4b57cd894b 100644 --- a/md/UBERON/47/UBERON_0008247.md +++ b/md/UBERON/47/UBERON_0008247.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008247 * *Label* = tube foot - * *Definition* = One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001919[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tube_feet] + * *Definition* = One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001919, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tube_feet ] ## Synonyms - * tube feet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tube_feet[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tube feet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tube_feet, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0008447.md b/md/UBERON/47/UBERON_0008447.md index 3ee8bd5074..00bd58c123 100644 --- a/md/UBERON/47/UBERON_0008447.md +++ b/md/UBERON/47/UBERON_0008447.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008447 * *Label* = intertarsal joint - * *Definition* = Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertarsal_articulations] + * *Definition* = Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertarsal_articulations ] ## Synonyms - * articulationes intertarsale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.831] - * articulationes intertarsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertarsal_articulations[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * articulationes intertarseae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.831] - * intermetatarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.831] - * intertarsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertarsal_articulations] - * intertarsal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertarsal_articulations] - * intertarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.831] - * tarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.831] - * tarsal joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intertarsal_articulations] + * articulationes intertarsale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.831 ] + * articulationes intertarsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertarsal_articulations, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * articulationes intertarseae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.831 ] + * intermetatarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.831 ] + * intertarsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertarsal_articulations ] + * intertarsal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertarsal_articulations ] + * intertarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.831 ] + * tarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.831 ] + * tarsal joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intertarsal_articulations ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A02.835.583.378.831 * SCTID:182221001 * SCTID:361283005 - * UMLS:C1527245 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tarsal_Joint] + * UMLS:C1527245 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tarsal_Joint ] * Wikipedia:Intertarsal_articulations * http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png * ncithesaurus:Tarsal_Joint @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0008847.md b/md/UBERON/47/UBERON_0008847.md index 15609132d0..34cd1330a6 100644 --- a/md/UBERON/47/UBERON_0008847.md +++ b/md/UBERON/47/UBERON_0008847.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008847 * *Label* = ovarian ligament - * *Definition* = a fibrous ligament that connects the ovary to the lateral surface of the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_ligament] + * *Definition* = a fibrous ligament that connects the ovary to the lateral surface of the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_ligament ] * *Comment* = The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium ## Synonyms - * ligament of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55422] - * ligamentum ovarii proprium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * proper ovarian ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55422] + * ligament of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55422 ] + * ligamentum ovarii proprium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * proper ovarian ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55422 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0008947.md b/md/UBERON/47/UBERON_0008947.md index 9d772a69e2..bb64e66408 100644 --- a/md/UBERON/47/UBERON_0008947.md +++ b/md/UBERON/47/UBERON_0008947.md @@ -10,7 +10,7 @@ ## Cross-references * EHDAA2:0004069 - * UMLS:C1514898 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_Primordium] + * UMLS:C1514898 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_Primordium ] * ncithesaurus:Respiratory_Primordium ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0009047.md b/md/UBERON/47/UBERON_0009047.md index ffb78b6e7e..0b4e5c48fd 100644 --- a/md/UBERON/47/UBERON_0009047.md +++ b/md/UBERON/47/UBERON_0009047.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0009647.md b/md/UBERON/47/UBERON_0009647.md index f1b4b76f67..d817a0c5bf 100644 --- a/md/UBERON/47/UBERON_0009647.md +++ b/md/UBERON/47/UBERON_0009647.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009647 * *Label* = tympanic membrane epithelium - * *Definition* = One of the two epithelia which make up the tympanic membrane (along with the fibrous layer) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of the two epithelia which make up the tympanic membrane (along with the fibrous layer) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * tympanic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001224] + * tympanic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001224 ] * tympanic membrane epithelial layer ## Cross-references * MA:0001224 * SCTID:70839004 - * UMLS:C1711401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tympanic_Epithelium] + * UMLS:C1711401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tympanic_Epithelium ] * ncithesaurus:Tympanic_Epithelium ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tympanic membrane](../../UBERON/64/UBERON_0002364.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0009747.md b/md/UBERON/47/UBERON_0009747.md index 8f9a993a7d..d83569d317 100644 --- a/md/UBERON/47/UBERON_0009747.md +++ b/md/UBERON/47/UBERON_0009747.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009747 * *Label* = tail fold of embryonic disc - * *Definition* = the crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011258] + * *Definition* = the crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011258 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0009847.md b/md/UBERON/47/UBERON_0009847.md index db2510783f..ed8e921961 100644 --- a/md/UBERON/47/UBERON_0009847.md +++ b/md/UBERON/47/UBERON_0009847.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009847 * *Label* = prostate field - * *Definition* = a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060515[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dph[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * *Definition* = a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060515, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dph, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010047.md b/md/UBERON/47/UBERON_0010047.md index d91f42cd65..cce265fb9b 100644 --- a/md/UBERON/47/UBERON_0010047.md +++ b/md/UBERON/47/UBERON_0010047.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010047 * *Label* = oral gland - * *Definition* = Gland of the epithelium lining the oral cavity. The most common are the salivary glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Gland of the epithelium lining the oral cavity. The most common are the salivary glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Note that Kardong classifies lacrimal glands here ## Synonyms * buccal gland - * gland of oral opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of oral part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of subdivision of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral opening gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral part of face gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral region gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * subdivision of mouth gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oral cavity gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gland of oral opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of oral part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of subdivision of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral opening gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral part of face gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral region gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * subdivision of mouth gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oral cavity gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mouth](../../UBERON/65/UBERON_0000165.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003293 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010147.md b/md/UBERON/47/UBERON_0010147.md index 5f7f913123..1bd1379903 100644 --- a/md/UBERON/47/UBERON_0010147.md +++ b/md/UBERON/47/UBERON_0010147.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010147 * *Label* = male accessory sex gland - * *Definition* = Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004798] + * *Definition* = Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004798 ] ## Synonyms - * male accessory gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004798] + * male accessory gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004798 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010247.md b/md/UBERON/47/UBERON_0010247.md index 3b6f3f5404..fc99a2590e 100644 --- a/md/UBERON/47/UBERON_0010247.md +++ b/md/UBERON/47/UBERON_0010247.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010247 * *Label* = choroidal tapetum cellulosum - * *Definition* = A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum#Classification[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum#Classification, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = The choroidal stroma adjacent to the tapetum lucidum contains numerous small blood vessels that penetrate the tapetal layer to form a single-layered capillary network, known as the choriocapillaris, on the surface of the tapetum. The tapetum cellulosum is thus interposed between the large branching vessels in the choroid and the single layer of the choriocapillaris beneath the retinal epithelium[PMID:14738502] ## Synonyms @@ -33,8 +33,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_33554 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9721 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9989 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010347.md b/md/UBERON/47/UBERON_0010347.md index 684da826c1..084164d25e 100644 --- a/md/UBERON/47/UBERON_0010347.md +++ b/md/UBERON/47/UBERON_0010347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010347 * *Label* = 6th arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a 6th arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [6th arch mesenchyme](../../UBERON/31/UBERON_0010031.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010547.md b/md/UBERON/47/UBERON_0010547.md index 5e7a8fed47..c5d05c2357 100644 --- a/md/UBERON/47/UBERON_0010547.md +++ b/md/UBERON/47/UBERON_0010547.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010547 * *Label* = pedal digit 1 metatarsal pre-cartilage condensation - * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe 1 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002040] - * foot digit 1 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 1 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe 1 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002040 ] + * foot digit 1 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1 mesenchyme](../../UBERON/62/UBERON_0010562.md) and [pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010747.md b/md/UBERON/47/UBERON_0010747.md index 4b430db734..ad47de446f 100644 --- a/md/UBERON/47/UBERON_0010747.md +++ b/md/UBERON/47/UBERON_0010747.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010747 * *Label* = body of ilium - * *Definition* = The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_ilium] + * *Definition* = The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_ilium ] ## Synonyms - * ilium body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42825] - * corpus ossis ilii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_ilium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ilium body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42825 ] + * corpus ossis ilii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_ilium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010847.md b/md/UBERON/47/UBERON_0010847.md index 625cc86ac0..0ac87aa723 100644 --- a/md/UBERON/47/UBERON_0010847.md +++ b/md/UBERON/47/UBERON_0010847.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010847 * *Label* = ulna pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [ulna](../../UBERON/24/UBERON_0001424.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0010947.md b/md/UBERON/47/UBERON_0010947.md index 84f12654f5..4e58f02f99 100644 --- a/md/UBERON/47/UBERON_0010947.md +++ b/md/UBERON/47/UBERON_0010947.md @@ -6,10 +6,10 @@ ## Synonyms - * occipital belly of occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46758] - * occipital part of occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46758] - * venter occipitalis (musculus occipitofrontalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46758] - * venter transversa musculus occipitofrontalis occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * occipital belly of occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46758 ] + * occipital part of occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46758 ] + * venter occipitalis (musculus occipitofrontalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46758 ] + * venter transversa musculus occipitofrontalis occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011147.md b/md/UBERON/47/UBERON_0011147.md index af810b3caa..6088e6705d 100644 --- a/md/UBERON/47/UBERON_0011147.md +++ b/md/UBERON/47/UBERON_0011147.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011247.md b/md/UBERON/47/UBERON_0011247.md index fc1db45e31..ddb6b8f57c 100644 --- a/md/UBERON/47/UBERON_0011247.md +++ b/md/UBERON/47/UBERON_0011247.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011347.md b/md/UBERON/47/UBERON_0011347.md index 51944e9933..e78ef46702 100644 --- a/md/UBERON/47/UBERON_0011347.md +++ b/md/UBERON/47/UBERON_0011347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011347 * *Label* = raphe of hard palate - * *Definition* = A palatine raphe that is part of a hard palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A palatine raphe that is part of a hard palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [palatine raphe](../../UBERON/46/UBERON_0011346.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011347 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011647.md b/md/UBERON/47/UBERON_0011647.md index 56d46f3f81..2ca96f40c4 100644 --- a/md/UBERON/47/UBERON_0011647.md +++ b/md/UBERON/47/UBERON_0011647.md @@ -9,7 +9,7 @@ * depressor labi mandibularis * depressor labi mandibularis muscle - * depressor mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010715] + * depressor mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010715 ] ## Cross-references @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011847.md b/md/UBERON/47/UBERON_0011847.md index b0af795132..c58b23ab8a 100644 --- a/md/UBERON/47/UBERON_0011847.md +++ b/md/UBERON/47/UBERON_0011847.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011847 * *Label* = acinus of parotid gland - * *Definition* = An acinus that is part of a parotid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a parotid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * parotid gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59863] + * parotid gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59863 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parotid gland](../../UBERON/31/UBERON_0001831.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0011947.md b/md/UBERON/47/UBERON_0011947.md index fdb92208bd..3c39446616 100644 --- a/md/UBERON/47/UBERON_0011947.md +++ b/md/UBERON/47/UBERON_0011947.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011947 * *Label* = ureter luminal urothelium - * *Definition* = A luminal layer of epithelium that is part of a ureter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A luminal layer of epithelium that is part of a ureter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [luminal layer of epithelium](../../UBERON/45/UBERON_0011945.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011947 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0012247.md b/md/UBERON/47/UBERON_0012247.md index 12ca1bd4c1..ae89e5eb57 100644 --- a/md/UBERON/47/UBERON_0012247.md +++ b/md/UBERON/47/UBERON_0012247.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012247 * *Label* = cervical gland - * *Definition* = mucus-secreting glands in the mucosa of the uterine cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/cervical+glands] + * *Definition* = mucus-secreting glands in the mucosa of the uterine cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/cervical+glands ] ## Synonyms - * glandulae cervicales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * glandulae cervicales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references * SCTID:280836000 - * UMLS:C2724437 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Gland] + * UMLS:C2724437 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Gland ] * ncithesaurus:Cervical_Gland ## Subsets @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71646 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0012447.md b/md/UBERON/47/UBERON_0012447.md index e98cedb59b..e5eef1ab46 100644 --- a/md/UBERON/47/UBERON_0012447.md +++ b/md/UBERON/47/UBERON_0012447.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013147.md b/md/UBERON/47/UBERON_0013147.md index 4270a15673..a521e4e3b9 100644 --- a/md/UBERON/47/UBERON_0013147.md +++ b/md/UBERON/47/UBERON_0013147.md @@ -7,7 +7,7 @@ ## Synonyms - * mesencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001102] + * mesencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001102 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013147 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013247.md b/md/UBERON/47/UBERON_0013247.md index 759c2a3270..32d0a1d8e5 100644 --- a/md/UBERON/47/UBERON_0013247.md +++ b/md/UBERON/47/UBERON_0013247.md @@ -6,7 +6,7 @@ ## Synonyms - * degenerating mesonephric portion of male paramesonephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29161] + * degenerating mesonephric portion of male paramesonephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29161 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [Mullerian duct](../../UBERON/90/UBERON_0003890.md) and [epithelial tube](../../UBERON/14/UBERON_0003914.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013247 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013447.md b/md/UBERON/47/UBERON_0013447.md index c4f593ca9b..3ea07e839d 100644 --- a/md/UBERON/47/UBERON_0013447.md +++ b/md/UBERON/47/UBERON_0013447.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013447 * *Label* = sagittal crest - * *Definition* = A sagittal crest is a ridge of bone running lengthwise along the midline of the top of the skull of many mammalian and reptilian skulls, among others. The presence of this ridge of bone indicates that there are exceptionally strong jaw muscles. The sagittal crest serves primarily for attachment of the temporalis muscle, which is one of the main chewing muscles. Development of the sagittal crest is thought to be connected to the development of this muscle. A sagittal crest usually develops during the childhood of an animal in conjunction with the growth of the temporalis muscle, as a result of convergence and gradual heightening of the temporal lines. A sagittal crest tends to be present on the skulls of adult animals that rely on powerful biting and clenching of their teeth, usually as a part of their hunting strategy. Skulls of some dinosaur species, including tyrannosaurs, possessed well developed sagittal crests. Among mammals, dogs, cats, lions, and many other carnivores have sagittal crests, as do some leaf eaters, including tapirs and some apes. Sagittal crests are found in robust great apes, and some early hominins. Prominent sagittal crests are found among male gorillas and orangutans, and do occur but only rarely in male chimpanzees such as Bili Apes. The largest sagittal crest ever discovered in the human lineage belongs to the 'Black Skull', Paranthropus aethiopicus field number KNM WT 17000, the earliest known robust hominid ancestor and the oldest robust australopithecine discovered to date. The prominence of the crest appears to have been an adaptation for the aethiopicus's heavy chewing, and the Black Skull's cheek teeth are correspondingly large. Smaller sagittal crests are also present on the skulls of other Paranthropines, including Paranthropus boisei and Paranthropus robustus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sagittal_crest] + * *Definition* = A sagittal crest is a ridge of bone running lengthwise along the midline of the top of the skull of many mammalian and reptilian skulls, among others. The presence of this ridge of bone indicates that there are exceptionally strong jaw muscles. The sagittal crest serves primarily for attachment of the temporalis muscle, which is one of the main chewing muscles. Development of the sagittal crest is thought to be connected to the development of this muscle. A sagittal crest usually develops during the childhood of an animal in conjunction with the growth of the temporalis muscle, as a result of convergence and gradual heightening of the temporal lines. A sagittal crest tends to be present on the skulls of adult animals that rely on powerful biting and clenching of their teeth, usually as a part of their hunting strategy. Skulls of some dinosaur species, including tyrannosaurs, possessed well developed sagittal crests. Among mammals, dogs, cats, lions, and many other carnivores have sagittal crests, as do some leaf eaters, including tapirs and some apes. Sagittal crests are found in robust great apes, and some early hominins. Prominent sagittal crests are found among male gorillas and orangutans, and do occur but only rarely in male chimpanzees such as Bili Apes. The largest sagittal crest ever discovered in the human lineage belongs to the 'Black Skull', Paranthropus aethiopicus field number KNM WT 17000, the earliest known robust hominid ancestor and the oldest robust australopithecine discovered to date. The prominence of the crest appears to have been an adaptation for the aethiopicus's heavy chewing, and the Black Skull's cheek teeth are correspondingly large. Smaller sagittal crests are also present on the skulls of other Paranthropines, including Paranthropus boisei and Paranthropus robustus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sagittal_crest ] * *Comment* = Compare with: AAO:0000384 parasagittal crest (UBERON:0013402) ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013547.md b/md/UBERON/47/UBERON_0013547.md index 1cf06e55ac..8c6d9ca1c9 100644 --- a/md/UBERON/47/UBERON_0013547.md +++ b/md/UBERON/47/UBERON_0013547.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013547 * *Label* = Brodmann (1909) area 16 - * *Definition* = Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_16] + * *Definition* = Brodmann area 16 is a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. It is a relatively undifferentiated cortical area that Brodmann regarded as part of the insula because of the relation of its innermost multiform layer (VI) with the claustrum (VICl). The laminar organization of cortex is almost totally lacking. The molecular layer (I) is wide as in area 15 of Brodmann-1905. The space between layer I and layer VI is composed of a mixture of pyramidal cells and spindle cells with no significant number of granule cells. Pyramidal cells clump in the outer part to form glomeruli similar to those seen in some of the primary olfactory areas (Brodmann-1905). This term also refers to an area known as peripaleocortical claustral - a cytoarchitecturally defined (agranular) portion of the insula at its rostral extreme where it approaches most closely the claustrum and the prepyriform area (Stephan-76). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_16 ] ## Synonyms - * B09-16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1747] - * Brodmann (1909) area 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1747] - * Brodmann area 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68613] - * area 16 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68613] - * area 16 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1747] - * B09-16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1747[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 16 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1011] - * brodmann's area 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1011] - * insula olfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1011[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1747 ] + * Brodmann (1909) area 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1747 ] + * Brodmann area 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68613 ] + * area 16 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68613 ] + * area 16 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1747 ] + * B09-16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1747, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 16 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1011 ] + * brodmann's area 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1011 ] + * insula olfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1011, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:68613 * NIF_GrossAnatomy:birnlex_1747 - * NeuroNames:1011 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1747] + * NeuroNames:1011 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1747 ] * Wikipedia:Brodmann_area_16 ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013647.md b/md/UBERON/47/UBERON_0013647.md index 12fa1f0fc2..b850dfe94d 100644 --- a/md/UBERON/47/UBERON_0013647.md +++ b/md/UBERON/47/UBERON_0013647.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013647 * *Label* = lateral pterygoid nerve - * *Definition* = External Pterygoid Nerve (or lateral pterygoid nerve): The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_nerve] + * *Definition* = External Pterygoid Nerve (or lateral pterygoid nerve): The nerve to the Pterygoideus externus frequently arises in conjunction with the buccinator nerve, but it may be given off separately from the anterior division of the mandibular nerve. It enters the deep surface of the muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_nerve ] ## Synonyms - * branch of buccal nerve to lateral pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53107] - * nerve to lateral pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53107] - * nervus pterygoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * external pterygoid nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_pterygoid_nerve] + * branch of buccal nerve to lateral pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53107 ] + * nerve to lateral pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53107 ] + * nervus pterygoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * external pterygoid nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_pterygoid_nerve ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0013747.md b/md/UBERON/47/UBERON_0013747.md index 5395c5691a..6e199f6911 100644 --- a/md/UBERON/47/UBERON_0013747.md +++ b/md/UBERON/47/UBERON_0013747.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013747 * *Label* = basibranchial cartilage - * *Definition* = A basibranchial element that is cartilage. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A basibranchial element that is cartilage. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial element](../../UBERON/46/UBERON_0013746.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013747 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0014447.md b/md/UBERON/47/UBERON_0014447.md index 0885658fb8..143a3119c9 100644 --- a/md/UBERON/47/UBERON_0014447.md +++ b/md/UBERON/47/UBERON_0014447.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014447 * *Label* = feathered facial disc - * *Definition* = A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_disc] + * *Definition* = A collection of feathers arranged in a concave pattern surrounding the eyes in some birds, particularly owls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_disc ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_30458 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014447 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0014547.md b/md/UBERON/47/UBERON_0014547.md index 6859274546..48f7c96d1a 100644 --- a/md/UBERON/47/UBERON_0014547.md +++ b/md/UBERON/47/UBERON_0014547.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014547 * *Label* = sacral spinal cord central canal - * *Definition* = Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010008] + * *Definition* = Part of spinal cord central canal contained in the sacral spinal cord. It is continuous rostrally with the spinal cord central canal of the lumbar cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010008 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of spinal cord central canal](../../UBERON/38/UBERON_0014538.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [sacral spinal cord](../../UBERON/43/UBERON_0005843.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014547 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0014647.md b/md/UBERON/47/UBERON_0014647.md index 3298e55a56..83953cdc28 100644 --- a/md/UBERON/47/UBERON_0014647.md +++ b/md/UBERON/47/UBERON_0014647.md @@ -6,8 +6,8 @@ ## Synonyms - * hemisphere of anterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72254] - * hemisphere of anterior lobe of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72254] + * hemisphere of anterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72254 ] + * hemisphere of anterior lobe of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72254 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior lobe of cerebellum](../../UBERON/31/UBERON_0002131.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014647 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0014847.md b/md/UBERON/47/UBERON_0014847.md index bae2207922..e80e8fee5c 100644 --- a/md/UBERON/47/UBERON_0014847.md +++ b/md/UBERON/47/UBERON_0014847.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014847 * *Label* = vastus intermedius - * *Definition* = The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_intermedius_muscle] + * *Definition* = The Vastus intermedius (Cruraeus) arises from the front and lateral surfaces of the body of the femur in its upper two-thirds, sitting under Rectus Femoris and from the lower part of the lateral intermuscular septum. Its fibers end in a superficial aponeurosis, which forms the deep part of the Quadriceps femoris tendon. The Vastus medialis and Vastus intermedius appear to be inseparably united, but when the Rectus femoris has been reflected a narrow interval will be observed extending upward from the medial border of the patella between the two muscles, and the separation may be continued as far as the lower part of the intertrochanteric line, where, however, the two muscles are frequently continuous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_intermedius_muscle ] ## Synonyms - * cruraeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_intermedius_muscle] - * crureus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002542] - * intermediate great muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002542] - * intermediate vastus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002542] - * musculus vastus intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002542] - * vastus intermedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_intermedius_muscle] - * vastus intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_intermedius_muscle] + * cruraeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_intermedius_muscle ] + * crureus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002542 ] + * intermediate great muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002542 ] + * intermediate vastus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002542 ] + * musculus vastus intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002542 ] + * vastus intermedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_intermedius_muscle ] + * vastus intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_intermedius_muscle ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg[BTO:0002542]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014847 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_0015047.md b/md/UBERON/47/UBERON_0015047.md index 9fe1d013e3..79430af77d 100644 --- a/md/UBERON/47/UBERON_0015047.md +++ b/md/UBERON/47/UBERON_0015047.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015047 * *Label* = manual digit 5 metacarpus endochondral element - * *Definition* = A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * manual digit 5 metacarpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * manual digit 5 metacarpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * manual digit 5 metacarpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * manual digit 5 metacarpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [manual digit 5 metacarpus cartilage element](../../UBERON/74/UBERON_0010574.md)or[manual digit 5 metacarpus pre-cartilage condensation](../../UBERON/69/UBERON_0010569.md)or[metacarpal bone of digit 5](../../UBERON/49/UBERON_0003649.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015047 + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2000147.md b/md/UBERON/47/UBERON_2000147.md index 81abd89067..3f37a1cdec 100644 --- a/md/UBERON/47/UBERON_2000147.md +++ b/md/UBERON/47/UBERON_2000147.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2000347.md b/md/UBERON/47/UBERON_2000347.md index ee286b51b6..aa0decb3a5 100644 --- a/md/UBERON/47/UBERON_2000347.md +++ b/md/UBERON/47/UBERON_2000347.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2000647.md b/md/UBERON/47/UBERON_2000647.md index 31f6f552e3..4be4b5060f 100644 --- a/md/UBERON/47/UBERON_2000647.md +++ b/md/UBERON/47/UBERON_2000647.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000647] + * dorsal posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000647 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2000747.md b/md/UBERON/47/UBERON_2000747.md index b01ba7f855..b30711bc5c 100644 --- a/md/UBERON/47/UBERON_2000747.md +++ b/md/UBERON/47/UBERON_2000747.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000747 * *Label* = epaxial region somite 30 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2000847.md b/md/UBERON/47/UBERON_2000847.md index d720561a2b..ba79b30d0c 100644 --- a/md/UBERON/47/UBERON_2000847.md +++ b/md/UBERON/47/UBERON_2000847.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000847[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000847, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_2000947.md b/md/UBERON/47/UBERON_2000947.md index 747cb52a6f..1a392f0384 100644 --- a/md/UBERON/47/UBERON_2000947.md +++ b/md/UBERON/47/UBERON_2000947.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000947 * *Label* = dorsal fin proximal radial bone - * *Definition* = dorsal fin proximal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * basal radial of dorsal fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000947] + * basal radial of dorsal fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000947 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001047.md b/md/UBERON/47/UBERON_2001047.md index ccefe490e5..8b3417023b 100644 --- a/md/UBERON/47/UBERON_2001047.md +++ b/md/UBERON/47/UBERON_2001047.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001047[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001047, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_2001147.md b/md/UBERON/47/UBERON_2001147.md index 566191ee1b..8406f725a2 100644 --- a/md/UBERON/47/UBERON_2001147.md +++ b/md/UBERON/47/UBERON_2001147.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001147 * *Label* = tooth 2MD - * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 2 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001247.md b/md/UBERON/47/UBERON_2001247.md index d4fe514c11..dbcd2077ae 100644 --- a/md/UBERON/47/UBERON_2001247.md +++ b/md/UBERON/47/UBERON_2001247.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001247 * *Label* = epibranchial 3 bone - * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and medially with pharyngobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone and medially with pharyngobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001347.md b/md/UBERON/47/UBERON_2001347.md index 8d61bb2b7d..6bfc731bf3 100644 --- a/md/UBERON/47/UBERON_2001347.md +++ b/md/UBERON/47/UBERON_2001347.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001547.md b/md/UBERON/47/UBERON_2001547.md index 82780031f7..2cd292ba5b 100644 --- a/md/UBERON/47/UBERON_2001547.md +++ b/md/UBERON/47/UBERON_2001547.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001547 * *Label* = abdominal scute - * *Definition* = Scute that is a bony plate that forms in the midline of ventral body margin between pectoral girdle and anal fin. Abdominal scutes may be present both anterior to and posterior to the pelvic girdle and fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scute that is a bony plate that forms in the midline of ventral body margin between pectoral girdle and anal fin. Abdominal scutes may be present both anterior to and posterior to the pelvic girdle and fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001647.md b/md/UBERON/47/UBERON_2001647.md index 4fcaf19f70..96cf2663b3 100644 --- a/md/UBERON/47/UBERON_2001647.md +++ b/md/UBERON/47/UBERON_2001647.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001647 * *Label* = pharyngeal tooth plate - * *Definition* = Dermal bone of the pharyngeal arches usually bearing teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone of the pharyngeal arches usually bearing teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngeal toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001647] + * pharyngeal toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001647 ] * tooth plate * toothplate @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001747.md b/md/UBERON/47/UBERON_2001747.md index 2c328f98d9..a92d9e3315 100644 --- a/md/UBERON/47/UBERON_2001747.md +++ b/md/UBERON/47/UBERON_2001747.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001747 * *Label* = lateral mesethmoid wing - * *Definition* = Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). ## Synonyms - * mesethmoid lateral wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001747] - * premaxillary articular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001747] + * mesethmoid lateral wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001747 ] + * premaxillary articular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001747 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001847.md b/md/UBERON/47/UBERON_2001847.md index 972432819f..0d1cd5eb9a 100644 --- a/md/UBERON/47/UBERON_2001847.md +++ b/md/UBERON/47/UBERON_2001847.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001847 * *Label* = dorsal hypohyal-urohyal joint - * *Definition* = Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [ceratohyal cartilage](../../UBERON/10/UBERON_0011610.md) and [core#connects](../../ts/core#connects.md) some [dorsal hypohyal bone](../../UBERON/96/UBERON_2000196.md) and [core#connects](../../ts/core#connects.md) some [urohyal](../../UBERON/52/UBERON_2000452.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2001947.md b/md/UBERON/47/UBERON_2001947.md index d636041db4..d706a572f4 100644 --- a/md/UBERON/47/UBERON_2001947.md +++ b/md/UBERON/47/UBERON_2001947.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001947 * *Label* = hyomandibular-otic region joint - * *Definition* = Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [hyomandibular bone](../../UBERON/06/UBERON_0011606.md) and [core#connects](../../ts/core#connects.md) some [otic region](../../UBERON/10/UBERON_0003110.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2002147.md b/md/UBERON/47/UBERON_2002147.md index 0b27c6ac71..e4e4c79030 100644 --- a/md/UBERON/47/UBERON_2002147.md +++ b/md/UBERON/47/UBERON_2002147.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2005247.md b/md/UBERON/47/UBERON_2005247.md index 20c6324ed2..baa3b1621a 100644 --- a/md/UBERON/47/UBERON_2005247.md +++ b/md/UBERON/47/UBERON_2005247.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005247 * *Label* = obsolete CiA - * *Definition* = Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-040625-12[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-060418-1] + * *Definition* = Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-040625-12, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-060418-1 ] * *Comment* = incorrectly generalized to teleosts/vertebrates. ## Synonyms - * circumferential ascending interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005247] + * circumferential ascending interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005247 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_2007047.md b/md/UBERON/47/UBERON_2007047.md index 8a4c2171c6..20e1269594 100644 --- a/md/UBERON/47/UBERON_2007047.md +++ b/md/UBERON/47/UBERON_2007047.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2100947.md b/md/UBERON/47/UBERON_2100947.md index be4d55e6a7..8ce88f8dfa 100644 --- a/md/UBERON/47/UBERON_2100947.md +++ b/md/UBERON/47/UBERON_2100947.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100947 * *Label* = dorsal fin proximal radial element - * *Definition* = Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Rod-like internal median skeletal support elements of the dorsal fin, which articulate with the distal radial elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * basal radial of dorsal fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000947] + * basal radial of dorsal fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000947 ] ## Cross-references @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_2200947.md b/md/UBERON/47/UBERON_2200947.md index fb776d0175..cf78f78d4a 100644 --- a/md/UBERON/47/UBERON_2200947.md +++ b/md/UBERON/47/UBERON_2200947.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200947 * *Label* = dorsal fin proximal radial cartilage - * *Definition* = dorsal fin proximal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * basal radial cartilage of dorsal fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000947] + * basal radial cartilage of dorsal fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000947 ] ## Cross-references @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_3000347.md b/md/UBERON/47/UBERON_3000347.md index 9ee13b7fab..c699917830 100644 --- a/md/UBERON/47/UBERON_3000347.md +++ b/md/UBERON/47/UBERON_3000347.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000347 * *Label* = obsolete os articulare - * *Definition* = Ossified posterior articular portion of Meckel's cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ossified posterior articular portion of Meckel's cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:2001805 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/47/UBERON_3000547.md b/md/UBERON/47/UBERON_3000547.md index b561ef68c6..8f3fa1a69f 100644 --- a/md/UBERON/47/UBERON_3000547.md +++ b/md/UBERON/47/UBERON_3000547.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_3000647.md b/md/UBERON/47/UBERON_3000647.md index 155f55ecd7..46c7b7f30c 100644 --- a/md/UBERON/47/UBERON_3000647.md +++ b/md/UBERON/47/UBERON_3000647.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000647 * *Label* = crista interna - * *Definition* = Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_3010047.md b/md/UBERON/47/UBERON_3010047.md index d9d99164a7..77320c5965 100644 --- a/md/UBERON/47/UBERON_3010047.md +++ b/md/UBERON/47/UBERON_3010047.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010047 * *Label* = M. quadratus femoris - * *Definition* = Originates on the ventro-lateral border of the ischium and inserts on the ventro-medial surface of the femur at the base of caput femoris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventro-lateral border of the ischium and inserts on the ventro-medial surface of the femur at the base of caput femoris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_3010447.md b/md/UBERON/47/UBERON_3010447.md index 9ff57e6a33..14208ff979 100644 --- a/md/UBERON/47/UBERON_3010447.md +++ b/md/UBERON/47/UBERON_3010447.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010447 * *Label* = M. extensor digitorum communis longus - * *Definition* = It arises on the lateral epicondyle of the humerus by two heads: the lateral one arises by a thin tendon in common with the m.extensor carpi ulnaris with fibers proximally fused. The internal one arises by a short tendon in common with proximally fused fibers of the m. extensor carpi radialis. It divides distally in two heads: the external head inserts with a long and thin tendon on the metacarpal V, at the same point of insertion of the m. abductor brevis dorsalis digiti V; the internal one inserts by a thin tendon on the proximal region of the metacarpal IV, between the m. extensor brevis superficialis digiti IV and the m. extensor brevis medius digiti IV (Pristimantis bogotensis). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = It arises on the lateral epicondyle of the humerus by two heads: the lateral one arises by a thin tendon in common with the m.extensor carpi ulnaris with fibers proximally fused. The internal one arises by a short tendon in common with proximally fused fibers of the m. extensor carpi radialis. It divides distally in two heads: the external head inserts with a long and thin tendon on the metacarpal V, at the same point of insertion of the m. abductor brevis dorsalis digiti V; the internal one inserts by a thin tendon on the proximal region of the metacarpal IV, between the m. extensor brevis superficialis digiti IV and the m. extensor brevis medius digiti IV (Pristimantis bogotensis). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_3010747.md b/md/UBERON/47/UBERON_3010747.md index 98547824ad..153c148c52 100644 --- a/md/UBERON/47/UBERON_3010747.md +++ b/md/UBERON/47/UBERON_3010747.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/47/UBERON_4200047.md b/md/UBERON/47/UBERON_4200047.md index 28785b7aef..6ebdcced9d 100644 --- a/md/UBERON/47/UBERON_4200047.md +++ b/md/UBERON/47/UBERON_4200047.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0000048.md b/md/UBERON/48/UBERON_0000048.md index 3408b38a01..ed6deef918 100644 --- a/md/UBERON/48/UBERON_0000048.md +++ b/md/UBERON/48/UBERON_0000048.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000048 * *Label* = pinhole eye - * *Definition* = Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1146/annurev.ne.15.030192.000245[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pinhole_eye] + * *Definition* = Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1146/annurev.ne.15.030192.000245, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pinhole_eye ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0000348.md b/md/UBERON/48/UBERON_0000348.md index 9d94ec939e..9692d3a0f9 100644 --- a/md/UBERON/48/UBERON_0000348.md +++ b/md/UBERON/48/UBERON_0000348.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000348 * *Label* = ophthalmic nerve - * *Definition* = the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009798[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wikipedia:Ophthalmic_nerve] + * *Definition* = the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009798, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wikipedia:Ophthalmic_nerve ] * *Comment* = Taxon notes. See: http://palaeos.com/vertebrates/glossary/glossaryPo.html ## Synonyms - * first division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * first division of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * nervus ophthalmicus (V1) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * nervus ophthalmicus (Va) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * nervus ophthalmicus [v1] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus ophthalmicus [va] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ophthalmic division [V1] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic division [Va] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic division of trigeminal nerve (V1) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic division of trigeminal nerve (Va) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic nerve [V1] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * ophthalmic nerve [Va] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52621] - * opthalmic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_nerve] - * ramus opthalmicus profundus (ramus V1) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010648] - * trigeminal V nerve ophthalmic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001104] - * ciliary nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryPo.html] - * ethmoidal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_nerve] - * ophthalmic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000926] - * ophthalmic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_nerve] - * profundus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryPo.html] + * first division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * first division of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * nervus ophthalmicus (V1) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * nervus ophthalmicus (Va) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * nervus ophthalmicus [v1] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus ophthalmicus [va] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ophthalmic division [V1] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic division [Va] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic division of trigeminal nerve (V1) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic division of trigeminal nerve (Va) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic nerve [V1] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * ophthalmic nerve [Va] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52621 ] + * opthalmic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_nerve ] + * ramus opthalmicus profundus (ramus V1) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010648 ] + * trigeminal V nerve ophthalmic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001104 ] + * ciliary nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryPo.html ] + * ethmoidal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_nerve ] + * ophthalmic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000926 ] + * ophthalmic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_nerve ] + * profundus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryPo.html ] ## Cross-references @@ -43,7 +43,7 @@ * MESH:A08.800.800.120.760.650 * OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA * SCTID:280210000 - * UMLS:C0029082 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ophthalmic_Nerve] + * UMLS:C0029082 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ophthalmic_Nerve ] * VHOG:0001349 * Wikipedia:Ophthalmic_nerve * ncithesaurus:Ophthalmic_Nerve @@ -67,8 +67,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Sensory medial ramus of the trigeminal nerve.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The profundus nerve is a distinct nerve only in fishes. (...) In mammals, the profundus nerve is the same as the most rostral (ophthalmic) branch of the trigeminal nerve.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0000948.md b/md/UBERON/48/UBERON_0000948.md index b40491c236..cc940b63cd 100644 --- a/md/UBERON/48/UBERON_0000948.md +++ b/md/UBERON/48/UBERON_0000948.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000948 * *Label* = heart - * *Definition* = a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Heart] + * *Definition* = a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Heart ] * *Comment* = note that we use the term 'circulatory organ' for the generic class. Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepi- thelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" doi:10.1101/gad.1485706 ## Synonyms - * chambered heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * chambered heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * vertebrate heart - * branchial heart [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * Herz [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000562] + * branchial heart [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * Herz [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000562 ] ## Cross-references @@ -34,7 +34,7 @@ * OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA * SCTID:302509004 * TAO:0000114 - * UMLS:C0018787 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Heart] + * UMLS:C0018787 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Heart ] * VHOG:0000276 * Wikipedia:Heart * XAO:0000064 @@ -63,7 +63,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [circulatory organ](../../UBERON/00/UBERON_0007100.md) and [has_part](../../BFO/51/BFO_0000051.md) some [cardiac chamber](../../UBERON/51/UBERON_0004151.md) ## Other Logical Axioms @@ -76,8 +76,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cardiac * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001048.md b/md/UBERON/48/UBERON_0001048.md index 1c3cfae96c..0288a420ee 100644 --- a/md/UBERON/48/UBERON_0001048.md +++ b/md/UBERON/48/UBERON_0001048.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001048 * *Label* = primordium - * *Definition* = Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001886[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:DJS[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0089570[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:FBrf0178740[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primordium] + * *Definition* = Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001886, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:DJS, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0089570, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:FBrf0178740, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primordium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * bud - * placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005495] + * placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005495 ] * rudiment ## Cross-references @@ -21,7 +21,7 @@ * FBbt:00005495 * FMA:86589 * MAT:0000482 - * UMLS:C0678727 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordium] + * UMLS:C0678727 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordium ] * Wikipedia:Primordium * XAO:0003043 * ncithesaurus:Primordium @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001148.md b/md/UBERON/48/UBERON_0001148.md index c8906c8a94..8b003b3f9e 100644 --- a/md/UBERON/48/UBERON_0001148.md +++ b/md/UBERON/48/UBERON_0001148.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001148 * *Label* = median nerve - * *Definition* = The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_nerve] + * *Definition* = The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nervus medianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus medianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A08.800.800.720.050.500 * OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA * SCTID:181010001 - * UMLS:C0025058 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Median_Nerve] + * UMLS:C0025058 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Median_Nerve ] * Wikipedia:Median_nerve * http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001248.md b/md/UBERON/48/UBERON_0001248.md index ccad2a3d17..0147b89738 100644 --- a/md/UBERON/48/UBERON_0001248.md +++ b/md/UBERON/48/UBERON_0001248.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001248 * *Label* = hilum of spleen - * *Definition* = The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_hilum] + * *Definition* = The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_hilum ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * hilum lienale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15841[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hilum splenicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15841[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hilum lienale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15841, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hilum splenicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15841, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spleen hilum * splenic hilum - * hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19303] - * hilum splenicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_hilum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19303 ] + * hilum splenicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_hilum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:15841 * MA:0002670 * SCTID:245377005 - * UMLS:C0229685 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Hilum] + * UMLS:C0229685 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Hilum ] * Wikipedia:Splenic_hilum * http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hilum](../../UBERON/85/UBERON_0004885.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001348.md b/md/UBERON/48/UBERON_0001348.md index ccf49d2763..5386008fb6 100644 --- a/md/UBERON/48/UBERON_0001348.md +++ b/md/UBERON/48/UBERON_0001348.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001348 * *Label* = brown adipose tissue - * *Definition* = A thermogenic form of adipose tissue that is composed of brown adipocytes[MP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011698] + * *Definition* = A thermogenic form of adipose tissue that is composed of brown adipocytes[MP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011698 ] ## Synonyms @@ -11,7 +11,7 @@ * brown fat * multilocular adipose tissue * textus adiposus fuscus - * textus adiposus fuscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brown_adipose_tissue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * textus adiposus fuscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brown_adipose_tissue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A10.165.114.322 * MIAA:0000198 * SCTID:15965003 - * UMLS:C0006298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brown_Adipose_Tissue] + * UMLS:C0006298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brown_Adipose_Tissue ] * Wikipedia:Brown_adipose_tissue * http://upload.wikimedia.org/wikipedia/commons/6/69/Brownfat_PETCT.jpg * ncithesaurus:Brown_Adipose_Tissue @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [brown fat cell](../../CL/49/CL_0000449.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Adipose tissue, cells of which contain multiple small lipid droplets.[FMA[FMA:FMA]] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001448.md b/md/UBERON/48/UBERON_0001448.md index b6fbed162c..110f097991 100644 --- a/md/UBERON/48/UBERON_0001448.md +++ b/md/UBERON/48/UBERON_0001448.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001448 * *Label* = metatarsal bone - * *Definition* = The metatarsus or metatarsal bones are a group of five long bones in the pes located between the tarsal bones of the hind- and mid-pes and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the manus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsal_bone] + * *Definition* = The metatarsus or metatarsal bones are a group of five long bones in the pes located between the tarsal bones of the hind- and mid-pes and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the manus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsal_bone ] ## Synonyms * metatarsal - * ossa metatarsalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002347[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ossa metatarsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002347] + * ossa metatarsalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002347, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ossa metatarsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002347 ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0000303 * MESH:A02.835.232.300.492 * SCTID:302532000 - * UMLS:C0025584 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone] + * UMLS:C0025584 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone ] * Wikipedia:Metatarsal_bone * galen:Metatarsal * http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsus region](../../UBERON/83/UBERON_0000983.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001548.md b/md/UBERON/48/UBERON_0001548.md index e623b32a2a..8a8a1ffc12 100644 --- a/md/UBERON/48/UBERON_0001548.md +++ b/md/UBERON/48/UBERON_0001548.md @@ -9,7 +9,7 @@ * lateral marginal vein of foot * vena marginalis lateralis - * vena marginalis lateralis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44359[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena marginalis lateralis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44359, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001648.md b/md/UBERON/48/UBERON_0001648.md index 076ec9f77e..01ece7f863 100644 --- a/md/UBERON/48/UBERON_0001648.md +++ b/md/UBERON/48/UBERON_0001648.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001648 * *Label* = vestibulocochlear nerve - * *Definition* = Cranial nerve that runs to the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibulocochlear_nerve] + * *Definition* = Cranial nerve that runs to the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibulocochlear_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -19,14 +19,14 @@ * cochleovestibular nerve * cranial nerve VIII * eighth cranial nerve - * nervus vestibulocochlearis [viii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50869[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus vestibulocochlearis [viii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50869, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stato-acoustic nerve * vestibulocochlear VIII nerve * vestibulocochlear nerve tree - * 8n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_890[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nervus octavus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:553[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus statoacusticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:553[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus vestibulocochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003490] + * 8n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_890, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nervus octavus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:553, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus statoacusticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:553, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus vestibulocochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003490 ] * octaval nerve * statoacoustic nerve @@ -44,13 +44,13 @@ * MA:0001109 * MESH:A08.800.800.120.910 * NIF_GrossAnatomy:birnlex_890 - * NeuroNames:553 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_890] + * NeuroNames:553 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_890 ] * OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA * SCTID:180945001 * TAO:0000247 - * UMLS:C0001162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_890] - * UMLS:C0001162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibulocochlear_Nerve] - * UMLS:C1278835 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_890] + * UMLS:C0001162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_890 ] + * UMLS:C0001162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibulocochlear_Nerve ] + * UMLS:C1278835 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_890 ] * VHOG:0000695 * Wikipedia:Vestibulocochlear_nerve * XAO:0003095 @@ -82,8 +82,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001748.md b/md/UBERON/48/UBERON_0001748.md index 8d0d2c432e..66b07c6d4a 100644 --- a/md/UBERON/48/UBERON_0001748.md +++ b/md/UBERON/48/UBERON_0001748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001748 * *Label* = capsule of parathyroid gland - * *Definition* = A capsule that surrounds a parathyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capsule that surrounds a parathyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:55566 * MA:0002676 - * UMLS:C0927176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parathyroid_Gland_Capsule] + * UMLS:C0927176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parathyroid_Gland_Capsule ] * ncithesaurus:Parathyroid_Gland_Capsule ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [parathyroid gland](../../UBERON/32/UBERON_0001132.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001748 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001848.md b/md/UBERON/48/UBERON_0001848.md index c41b8a5987..a0537ba863 100644 --- a/md/UBERON/48/UBERON_0001848.md +++ b/md/UBERON/48/UBERON_0001848.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001848 * *Label* = auricular cartilage - * *Definition* = cartilage of the pinna and much of the external ear canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/auricular+cartilage] + * *Definition* = cartilage of the pinna and much of the external ear canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/auricular+cartilage ] ## Synonyms - * cartilage of pinna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61013] + * cartilage of pinna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61013 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pinna](../../UBERON/57/UBERON_0001757.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0001948.md b/md/UBERON/48/UBERON_0001948.md index d61c8de924..d583bc5082 100644 --- a/md/UBERON/48/UBERON_0001948.md +++ b/md/UBERON/48/UBERON_0001948.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001948 * *Label* = regional part of spinal cord - * *Definition* = A multi-tissue structure that is part of a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -13,7 +13,7 @@ * NIF_GrossAnatomy:birnlex_1496 * SCTID:244437008 - * UMLS:C1268166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord_Part] + * UMLS:C1268166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord_Part ] * ncithesaurus:Spinal_Cord_Part ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002048.md b/md/UBERON/48/UBERON_0002048.md index 4f33e6493a..c6e9fdbb4d 100644 --- a/md/UBERON/48/UBERON_0002048.md +++ b/md/UBERON/48/UBERON_0002048.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002048 * *Label* = lung - * *Definition* = Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere[WP]. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000763[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lung] + * *Definition* = Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere[WP]. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000763, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lung ] * *Comment* = respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi // Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP] ## Synonyms - * pulmo [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pulmo [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,7 +30,7 @@ * MIAA:0000135 * OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA * SCTID:181216001 - * UMLS:C0024109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lung] + * UMLS:C0024109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lung ] * VHOG:0000310 * Wikipedia:Lung * XAO:0000119 @@ -66,8 +66,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pulmonary * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002148.md b/md/UBERON/48/UBERON_0002148.md index c07ad6d551..67b7d8c750 100644 --- a/md/UBERON/48/UBERON_0002148.md +++ b/md/UBERON/48/UBERON_0002148.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002148 * *Label* = locus ceruleus - * *Definition* = The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:577[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021703[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Locus_ceruleus] + * *Definition* = The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:577, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021703, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Locus_ceruleus ] * *Comment* = TODO - check ZFA/pons. also GO says part of dorsorostral pons ## Synonyms - * blue nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_905] + * blue nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_905 ] * caerulean nucleus - * locus caeruleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_905] + * locus caeruleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_905 ] * locus coeruleu * locus coeruleus - * nucleus caeruleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72478[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus caeruleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72478, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nucleus of locus caeruleus - * nucleus pigmentosus pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_905] - * substantia ferruginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_905] - * locus cinereus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001408] - * locus coeruleus (Vicq d'Azyr) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:583] - * nucleus loci caerulei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:583[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus pigmentosus pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_905 ] + * substantia ferruginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_905 ] + * locus cinereus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001408 ] + * locus coeruleus (Vicq d'Azyr) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:583 ] + * nucleus loci caerulei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:583, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,11 +34,11 @@ * MA:0001017 * MESH:A08.186.211.132.659.473 * NIF_GrossAnatomy:birnlex_905 - * NeuroNames:583 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_905] + * NeuroNames:583 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_905 ] * SCTID:369016004 * TAO:0000539 - * UMLS:C0023951 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_905] - * UMLS:C0023951 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Locus_Coeruleus] + * UMLS:C0023951 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_905 ] + * UMLS:C0023951 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Locus_Coeruleus ] * Wikipedia:Locus_ceruleus * ZFA:0000539 * http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png @@ -66,8 +66,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002248.md b/md/UBERON/48/UBERON_0002248.md index 04ee1dab6c..dcc99f8ef5 100644 --- a/md/UBERON/48/UBERON_0002248.md +++ b/md/UBERON/48/UBERON_0002248.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002248 * *Label* = transverse pericardial sinus - * *Definition* = The passage between the venous and arterial mesocardia i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] + * *Definition* = The passage between the venous and arterial mesocardia i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] ## Synonyms - * Thiele's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77132] - * transverse sinus of pericardial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77132] + * Thiele's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77132 ] + * transverse sinus of pericardial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77132 ] * transverse sinus ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002348.md b/md/UBERON/48/UBERON_0002348.md index 2e935d1aaa..8167c6a447 100644 --- a/md/UBERON/48/UBERON_0002348.md +++ b/md/UBERON/48/UBERON_0002348.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002348 * *Label* = epicardium - * *Definition* = Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicardium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicardium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer. ## Synonyms * heart epicardium * visceral serous pericardium of heart - * visceral serous pericardium proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9461] - * lamina visceralis pericardii serosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicardium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * visceral serous pericardium proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9461 ] + * lamina visceralis pericardii serosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicardium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * EHDAA2:0002202 * FMA:9461 * TAO:0005057 - * UMLS:C0225968 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epicardium] + * UMLS:C0225968 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epicardium ] * VHOG:0000119 * Wikipedia:Epicardium * XAO:0000316 @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = External layer of the heart.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The inner layer of the pericardium that is in contact with the surface of the heart.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002448.md b/md/UBERON/48/UBERON_0002448.md index 817fe84e94..87167d63d7 100644 --- a/md/UBERON/48/UBERON_0002448.md +++ b/md/UBERON/48/UBERON_0002448.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002448 * *Label* = fungiform papilla - * *Definition* = any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006257] + * *Definition* = any of the mushroom-shaped papillae, which have a single taste bud at the tip, located mostly on the dorsal anterior portion of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006257 ] ## Synonyms - * fungiform papilla of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54821] - * fungiform papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fungiform papillae set [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * papillae fungiformes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fungiform_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fungiform papilla of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54821 ] + * fungiform papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fungiform papillae set [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * papillae fungiformes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fungiform_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,10 +19,10 @@ * MA:0001595 * NIF_GrossAnatomy:birnlex_4106 * SCTID:80673002 - * UMLS:C0226968 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106] - * UMLS:C0545784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106] - * UMLS:C0545784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fungiform_Papilla] - * UMLS:C1267558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106] + * UMLS:C0226968 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106 ] + * UMLS:C0545784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106 ] + * UMLS:C0545784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fungiform_Papilla ] + * UMLS:C1267558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106 ] * Wikipedia:Fungiform_papilla * http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted][Wikipedia:Fungiform_papilla]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002548.md b/md/UBERON/48/UBERON_0002548.md index 9b2e9d3167..93637b44a4 100644 --- a/md/UBERON/48/UBERON_0002548.md +++ b/md/UBERON/48/UBERON_0002548.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002548 * *Label* = larva - * *Definition* = a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] + * *Definition* = a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] * *Comment* = This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms ## Synonyms - * larval organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002048] - * ammocoete [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * bipinnaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * caterpillar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * glochidium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * grub [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * leptocephalus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * maggot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * naiad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * nymph [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * planula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * tadpole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * trochophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * veliger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * wriggler [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] - * zoea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] + * larval organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002048 ] + * ammocoete [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * bipinnaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * caterpillar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * glochidium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * grub [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * leptocephalus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * maggot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * naiad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * nymph [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * planula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * tadpole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * trochophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * veliger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * wriggler [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] + * zoea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] ## Cross-references @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [larval stage](../../UBERON/69/UBERON_0000069.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Whole organism that is premetamorphic or a very immature individual.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = larval - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002648.md b/md/UBERON/48/UBERON_0002648.md index 1eb83685dd..d6d313923a 100644 --- a/md/UBERON/48/UBERON_0002648.md +++ b/md/UBERON/48/UBERON_0002648.md @@ -6,16 +6,16 @@ ## Synonyms - * AME [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1264[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * eminentia mediana anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:403[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * AME [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1264, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * eminentia mediana anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:403, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:AME * FMA:74870 * NIF_GrossAnatomy:birnlex_1264 - * NeuroNames:403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1264] - * UMLS:C0175323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1264] + * NeuroNames:403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1264 ] + * UMLS:C0175323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1264 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002748.md b/md/UBERON/48/UBERON_0002748.md index 138c5f56f9..0106dcac39 100644 --- a/md/UBERON/48/UBERON_0002748.md +++ b/md/UBERON/48/UBERON_0002748.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002748 * *Label* = medial lemniscus of medulla - * *Definition* = A medial lemniscus that is part of a medulla [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial lemniscus that is part of a medulla [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medulla medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lemniscus medialis (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:787[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial lemniscus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:787] + * medulla medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lemniscus medialis (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:787, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial lemniscus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:787 ] ## Cross-references * BAMS:mlm * FMA:72621 * NIF_GrossAnatomy:birnlex_1570 - * NeuroNames:787 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1570] - * UMLS:C0228534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1570] + * NeuroNames:787 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1570 ] + * UMLS:C0228534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1570 ] ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial lemniscus](../../UBERON/02/UBERON_0003002.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002748 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002848.md b/md/UBERON/48/UBERON_0002848.md index 8db1f6ba54..b122c86420 100644 --- a/md/UBERON/48/UBERON_0002848.md +++ b/md/UBERON/48/UBERON_0002848.md @@ -6,15 +6,15 @@ ## Synonyms - * fifth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6325] - * fifth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6325] + * fifth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6325 ] + * fifth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6325 ] ## Cross-references * EMAPA:25179 * FMA:6325 * NIF_GrossAnatomy:birnlex_2615 - * UMLS:C0501703 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2615] + * UMLS:C0501703 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2615 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0002948.md b/md/UBERON/48/UBERON_0002948.md index b00e28ceb6..5a5695313b 100644 --- a/md/UBERON/48/UBERON_0002948.md +++ b/md/UBERON/48/UBERON_0002948.md @@ -6,8 +6,8 @@ ## Synonyms - * gyrus occipitalis primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61901] - * gyrus occipitalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:154[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus occipitalis primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61901 ] + * gyrus occipitalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:154, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,9 +15,9 @@ * BAMS:SOG * FMA:61901 * NIF_GrossAnatomy:birnlex_758 - * NeuroNames:154 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_758] + * NeuroNames:154 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_758 ] * SCTID:279182006 - * UMLS:C0228230 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_758] + * UMLS:C0228230 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_758 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003048.md b/md/UBERON/48/UBERON_0003048.md index 7caa90a886..3e012e559a 100644 --- a/md/UBERON/48/UBERON_0003048.md +++ b/md/UBERON/48/UBERON_0003048.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003048 * *Label* = regional part of hypothalamus - * *Definition* = A regional part of brain that is part of a hypothalamus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a hypothalamus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hypothalamus segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67706] - * segment of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_995] + * hypothalamus segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67706 ] + * segment of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_995 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypothalamus](../../UBERON/98/UBERON_0001898.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003148.md b/md/UBERON/48/UBERON_0003148.md index dc95af0bed..8c39a3cff7 100644 --- a/md/UBERON/48/UBERON_0003148.md +++ b/md/UBERON/48/UBERON_0003148.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003148 * *Label* = obsolete sclerite - * *Definition* = hardened portions of arthropod exoskeletons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclerite] + * *Definition* = hardened portions of arthropod exoskeletons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclerite ] * *Comment* = arthropod specific groupings belong in separate ontology ## Synonyms - * plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004475] + * plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004475 ] ## Cross-references @@ -30,9 +30,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004475 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000909 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003148 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/48/UBERON_0003248.md b/md/UBERON/48/UBERON_0003248.md index 7eb7cd2024..d3363cc4e5 100644 --- a/md/UBERON/48/UBERON_0003248.md +++ b/md/UBERON/48/UBERON_0003248.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003248 * *Label* = epithelium of footplate - * *Definition* = An epithelium that is part of a footplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a footplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * foot plate epithelium - * footplate epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000548] + * footplate epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000548 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [footplate](../../UBERON/71/UBERON_0006871.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003448.md b/md/UBERON/48/UBERON_0003448.md index fd3cecaec9..54f472b469 100644 --- a/md/UBERON/48/UBERON_0003448.md +++ b/md/UBERON/48/UBERON_0003448.md @@ -3,38 +3,38 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003448 * *Label* = manus nerve - * *Definition* = A nerve that is part of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000629] - * nerve of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb autopod nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000629 ] + * nerve of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb autopod nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -50,15 +50,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003548.md b/md/UBERON/48/UBERON_0003548.md index da509abdda..257c48e68c 100644 --- a/md/UBERON/48/UBERON_0003548.md +++ b/md/UBERON/48/UBERON_0003548.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003548 * *Label* = forebrain meninges - * *Definition* = A meninx that is part of a forebrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a forebrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forebrain meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninx of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * forebrain meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninx of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003648.md b/md/UBERON/48/UBERON_0003648.md index 443e37cdd2..5e75773abb 100644 --- a/md/UBERON/48/UBERON_0003648.md +++ b/md/UBERON/48/UBERON_0003648.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003648 * *Label* = metacarpal bone of digit 4 - * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4 th digit of hand metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th digit of hand metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 4 th finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * 4 th digit of hand metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th digit of hand metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 4 th finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * finger 4 metacarpus - * fourth finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23902] - * hand digit 4 metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 4 metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fourth finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23902 ] + * hand digit 4 metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 4 metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual digit 4 metacarpus * metacarpal 4 - * metacarpal IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23902] - * metacarpal bone digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001367] - * metacarpal bone of 4 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of 4 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 4 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 4 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of hand digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metacarpal IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23902 ] + * metacarpal bone digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001367 ] + * metacarpal bone of 4 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of 4 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 4 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 4 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of hand digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,7 +37,7 @@ * FMA:23902 * MA:0001367 * SCTID:263401001 - * UMLS:C1708990 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone_Digit_4] + * UMLS:C1708990 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone_Digit_4 ] * ncithesaurus:Metacarpal_Bone_Digit_4 ## Subsets @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of manual digit 4](../../UBERON/30/UBERON_0004330.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fourth metacarpal bone (metacarpal bone of the ring finger) is shorter and smaller than the third. The base is small and quadrilateral; its superior surface presents two facets, a large one medially for articulation with the hamate, and a small one laterally for the capitate. On the radial side are two oval facets, for articulation with the third metacarpal; and on the ulnar side a single concave facet, for the fifth metacarpal[Wikipedia:Fourth_metacarpal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003848.md b/md/UBERON/48/UBERON_0003848.md index 130eead792..6ff1da7eca 100644 --- a/md/UBERON/48/UBERON_0003848.md +++ b/md/UBERON/48/UBERON_0003848.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003848 * *Label* = gonadal vein - * *Definition* = In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonadal_vein] + * *Definition* = In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonadal_vein ] ## Synonyms - * gonad vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gonad vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [gonad](../../UBERON/91/UBERON_0000991.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0003948.md b/md/UBERON/48/UBERON_0003948.md index bee03a1bf2..5c4332d54f 100644 --- a/md/UBERON/48/UBERON_0003948.md +++ b/md/UBERON/48/UBERON_0003948.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003948 * *Label* = blood-air barrier - * *Definition* = the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002324] + * *Definition* = the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002324 ] * *Comment* = TODO - alveolar lumen ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004048.md b/md/UBERON/48/UBERON_0004048.md index 51d585623f..528bf6a11a 100644 --- a/md/UBERON/48/UBERON_0004048.md +++ b/md/UBERON/48/UBERON_0004048.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004048 * *Label* = pontine cistern - * *Definition* = the space located on lateral aspects of the pons at the junction with the celebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009030] + * *Definition* = the space located on lateral aspects of the pons at the junction with the celebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009030 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004148.md b/md/UBERON/48/UBERON_0004148.md index d17ddb041d..9575b08e35 100644 --- a/md/UBERON/48/UBERON_0004148.md +++ b/md/UBERON/48/UBERON_0004148.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004148 * *Label* = cardiac vein - * *Definition* = Vein of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:Obol] + * *Definition* = Vein of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:Obol ] ## Synonyms - * cardiac vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12846] - * heart vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * coronary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronary_circulation] + * cardiac vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12846 ] + * heart vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * coronary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronary_circulation ] ## Cross-references * EHDAA2:0004507 * FMA:12846 * SCTID:277726009 - * UMLS:C0226654 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Vein] - * UMLS:C0226737 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coronary_Vein] + * UMLS:C0226654 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Vein ] + * UMLS:C0226737 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coronary_Vein ] * galen:CoronaryVein * ncithesaurus:Cardiac_Vein * ncithesaurus:Coronary_Vein @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004248.md b/md/UBERON/48/UBERON_0004248.md index 51da7e6b5f..1f4d40e581 100644 --- a/md/UBERON/48/UBERON_0004248.md +++ b/md/UBERON/48/UBERON_0004248.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004248 * *Label* = pedal digit bone - * *Definition* = A bone that is part of a hindlimb digit. Typically phalanges but may include sesamoids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a hindlimb digit. Typically phalanges but may include sesamoids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * bone of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of foot bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of foot bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * digital bone of foot - * digitus pedis bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000646] - * foot digit bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digitus pedis bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000646 ] + * foot digit bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004348.md b/md/UBERON/48/UBERON_0004348.md index bc6680ca55..246fd3f7ab 100644 --- a/md/UBERON/48/UBERON_0004348.md +++ b/md/UBERON/48/UBERON_0004348.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004348 * *Label* = optic eminence - * *Definition* = the embryonic structure that gives rise to the corneal ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006305] + * *Definition* = the embryonic structure that gives rise to the corneal ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006305 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004448.md b/md/UBERON/48/UBERON_0004448.md index 8fa693d668..8659810213 100644 --- a/md/UBERON/48/UBERON_0004448.md +++ b/md/UBERON/48/UBERON_0004448.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004448 * *Label* = distal epiphysis of phalanx - * *Definition* = A distal epiphysis that is part of a phalanx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal epiphysis that is part of a phalanx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004548.md b/md/UBERON/48/UBERON_0004548.md index 858226880c..ef5df13a02 100644 --- a/md/UBERON/48/UBERON_0004548.md +++ b/md/UBERON/48/UBERON_0004548.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004548 * *Label* = left eye - * *Definition* = An eye that is part of a left side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An eye that is part of a left side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12515] - * left orbital part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54450] - * left orbital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54450] + * left eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12515 ] + * left orbital part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54450 ] + * left orbital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54450 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [eye](../../UBERON/70/UBERON_0000970.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004648.md b/md/UBERON/48/UBERON_0004648.md index 45fab9fe07..838ec5a5f5 100644 --- a/md/UBERON/48/UBERON_0004648.md +++ b/md/UBERON/48/UBERON_0004648.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004648 * *Label* = esophagus muscularis mucosa - * *Definition* = A muscularis mucosa that is part of a esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * esophagus muscularis mucosae - * lamina muscularis of esophageal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63059] - * muscularis mucosae of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63059] + * lamina muscularis of esophageal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63059 ] + * muscularis mucosae of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63059 ] ## Cross-references * FMA:63059 * MA:0002681 * SCTID:47720007 - * UMLS:C0227177 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Muscularis_Mucosa] + * UMLS:C0227177 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Muscularis_Mucosa ] * ncithesaurus:Esophageal_Muscularis_Mucosa ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004748.md b/md/UBERON/48/UBERON_0004748.md index 1f666b8ce3..5e20aeb661 100644 --- a/md/UBERON/48/UBERON_0004748.md +++ b/md/UBERON/48/UBERON_0004748.md @@ -28,9 +28,10 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).[ZFA] * *[consider](../../er/oboInOwl#consider.md)* = AAO:0000372 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000620 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004748 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/48/UBERON_0004848.md b/md/UBERON/48/UBERON_0004848.md index 979b514b2d..d61a494f41 100644 --- a/md/UBERON/48/UBERON_0004848.md +++ b/md/UBERON/48/UBERON_0004848.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004848 * *Label* = respiratory system arterial endothelium - * *Definition* = An endothelium of artery that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium of artery that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius arterial endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius artery endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius endothelium of artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arterial endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arterial endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * artery endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * artery endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of artery of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of artery of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system artery endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius arterial endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius artery endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius endothelium of artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arterial endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arterial endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * artery endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * artery endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of artery of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of artery of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system artery endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium of artery](../../UBERON/17/UBERON_0001917.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0004948.md b/md/UBERON/48/UBERON_0004948.md index 184eebc91b..dd776e99a2 100644 --- a/md/UBERON/48/UBERON_0004948.md +++ b/md/UBERON/48/UBERON_0004948.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004948 * *Label* = submucosa of left main bronchus - * *Definition* = A submucosa that is part of a left main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a left main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left main bronchial submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13140] - * left main bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left principal bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of left bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * left bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left main bronchial submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13140 ] + * left main bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left principal bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of left bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left main bronchus](../../UBERON/78/UBERON_0002178.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005048.md b/md/UBERON/48/UBERON_0005048.md index 3f9342c9cc..9def0f6658 100644 --- a/md/UBERON/48/UBERON_0005048.md +++ b/md/UBERON/48/UBERON_0005048.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005048 * *Label* = mucosa of uterine tube - * *Definition* = A mucosa that is part of a fallopian tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a fallopian tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fallopian tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fallopian tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18319] - * mucous membrane of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa tubae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18319[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine tubal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18319] - * uterine tube mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fallopian tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fallopian tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18319 ] + * mucous membrane of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa tubae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18319, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine tubal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18319 ] + * uterine tube mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fallopian tube](../../UBERON/89/UBERON_0003889.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005148.md b/md/UBERON/48/UBERON_0005148.md index e789d07800..aa4f2abbd2 100644 --- a/md/UBERON/48/UBERON_0005148.md +++ b/md/UBERON/48/UBERON_0005148.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005148 * *Label* = metanephric S-shaped body - * *Definition* = The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072284] + * *Definition* = The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072284 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [S-shaped body](../../UBERON/99/UBERON_0004199.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005248.md b/md/UBERON/48/UBERON_0005248.md index ee460f48cd..1ac7bc3ef1 100644 --- a/md/UBERON/48/UBERON_0005248.md +++ b/md/UBERON/48/UBERON_0005248.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005248 * *Label* = bulbus cordis myocardium - * *Definition* = A myocardium that is part of a bulbus cordis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A myocardium that is part of a bulbus cordis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bulbus cordis cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000609] + * bulbus cordis cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000609 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium](../../UBERON/49/UBERON_0002349.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bulbus cordis](../../UBERON/06/UBERON_0004706.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005348.md b/md/UBERON/48/UBERON_0005348.md index 3d480f4874..c10337ba38 100644 --- a/md/UBERON/48/UBERON_0005348.md +++ b/md/UBERON/48/UBERON_0005348.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005348 * *Label* = ansiform lobule - * *Definition* = A lobule comprising the greater part of the hemisphere of the cerebellum; its superior and inferior surfaces are separated by the horizontal fissure into major parts known as crus I (superior semilunar lobule) and crus II (inferior semilunar lobule). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/ansiform+lobule] + * *Definition* = A lobule comprising the greater part of the hemisphere of the cerebellum; its superior and inferior surfaces are separated by the horizontal fissure into major parts known as crus I (superior semilunar lobule) and crus II (inferior semilunar lobule). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/ansiform+lobule ] * *Comment* = Taxon notes: MP says not present in humans; however, we group based on synonymy from multiple sources ## Synonyms - * ansiform lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72257] - * ansiform lobule of cerebellum [h vii a] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72257] - * lobuli semilunares cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72257[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus ansiformis cerebelli [h vii a] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72257[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semilunar lobules of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72257] + * ansiform lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72257 ] + * ansiform lobule of cerebellum [h vii a] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72257 ] + * lobuli semilunares cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72257, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus ansiformis cerebelli [h vii a] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72257, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semilunar lobules of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72257 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005448.md b/md/UBERON/48/UBERON_0005448.md index 5c8b43df39..29b28bcebe 100644 --- a/md/UBERON/48/UBERON_0005448.md +++ b/md/UBERON/48/UBERON_0005448.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005448 * *Label* = greater omentum - * *Definition* = The greater omentum (also the great omentum, omentum majus, gastrocolic omentum, epiplon, or, especially in animals, caul) is a large fold of peritoneum that hangs down from the stomach, and extends from the stomach to the posterior abdominal wall after associating with the transverse colon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] + * *Definition* = The greater omentum (also the great omentum, omentum majus, gastrocolic omentum, epiplon, or, especially in animals, caul) is a large fold of peritoneum that hangs down from the stomach, and extends from the stomach to the posterior abdominal wall after associating with the transverse colon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] ## Synonyms - * caul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * epiploic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * epiplooen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * epiploon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * epiplon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * gastrocolic omentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * great omentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * omentectomy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] - * omentum majus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * omentum majus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_omentum] + * caul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * epiploic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * epiplooen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * epiploon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * epiplon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * gastrocolic omentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * great omentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * omentectomy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * omentum majus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum ] + * omentum majus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_omentum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * EV:0100085 * FMA:9580 * SCTID:362711003 - * UMLS:C0230259 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Greater_Omentum] + * UMLS:C0230259 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Greater_Omentum ] * VHOG:0000356 * Wikipedia:Greater_omentum * http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A filmy, transparent double fold of the peritoneum, draping the transverse colon and coils of the small intestine. It is attached along the greater curvature of the stomach and the first part of the duodenum. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005648.md b/md/UBERON/48/UBERON_0005648.md index dce49616e8..64fb7a0467 100644 --- a/md/UBERON/48/UBERON_0005648.md +++ b/md/UBERON/48/UBERON_0005648.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005648 * *Label* = manual digit 5 epithelium - * *Definition* = An epithelium that is part of a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 5 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 5 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0005848.md b/md/UBERON/48/UBERON_0005848.md index 7505fe39c0..bcff63c9c1 100644 --- a/md/UBERON/48/UBERON_0005848.md +++ b/md/UBERON/48/UBERON_0005848.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005848 * *Label* = sacral spinal cord lateral column - * *Definition* = A subdivision of spinal cord lateral column that is part of a sacral spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord lateral column that is part of a sacral spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral spinal cord](../../UBERON/43/UBERON_0005843.md) and [subdivision of spinal cord lateral column](../../UBERON/78/UBERON_0006078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006048.md b/md/UBERON/48/UBERON_0006048.md index 0e7bb67806..2a961a9bfa 100644 --- a/md/UBERON/48/UBERON_0006048.md +++ b/md/UBERON/48/UBERON_0006048.md @@ -8,8 +8,8 @@ * autopod digit 1 * digit I - * limb digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:00003023] - * dewclaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dewclaw[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * limb digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:00003023 ] + * dewclaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dewclaw, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006248.md b/md/UBERON/48/UBERON_0006248.md index 485c04c707..f2db146c81 100644 --- a/md/UBERON/48/UBERON_0006248.md +++ b/md/UBERON/48/UBERON_0006248.md @@ -22,14 +22,13 @@ ## Superclasses * [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) - * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [incus endochondral element](../../UBERON/17/UBERON_0015017.md) * [develops from](../../RO/02/RO_0002202.md) some [1st arch mesenchyme](../../UBERON/42/UBERON_0010042.md) * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [incus endochondral element](../../UBERON/17/UBERON_0015017.md) ## Other Logical Axioms @@ -37,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006448.md b/md/UBERON/48/UBERON_0006448.md index 2ac2bbf858..5cc0227724 100644 --- a/md/UBERON/48/UBERON_0006448.md +++ b/md/UBERON/48/UBERON_0006448.md @@ -6,16 +6,16 @@ ## Synonyms - * L1 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71187] - * L1 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1336] - * first lumbar spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1336] + * L1 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71187 ] + * L1 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1336 ] + * first lumbar spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1336 ] ## Cross-references * FMA:71187 * NIF_GrossAnatomy:birnlex_1336 * SCTID:278776009 - * UMLS:C0457872 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1336] + * UMLS:C0457872 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1336 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006648.md b/md/UBERON/48/UBERON_0006648.md index 8ba69667e6..53867ca3ec 100644 --- a/md/UBERON/48/UBERON_0006648.md +++ b/md/UBERON/48/UBERON_0006648.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006648 * *Label* = adventitia of seminal vesicle - * *Definition* = An adventitia that is part of a seminal vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adventitia that is part of a seminal vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adventitia of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19403] - * seminal vesicle adventitia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19403] - * tunica adventitia (vesicula seminalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19403] - * tunica adventitia glandulae vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19403[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adventitia of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19403 ] + * seminal vesicle adventitia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19403 ] + * tunica adventitia (vesicula seminalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19403 ] + * tunica adventitia glandulae vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19403, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adventitia](../../UBERON/42/UBERON_0005742.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006848.md b/md/UBERON/48/UBERON_0006848.md index 3d58b8c057..67b5f2d9b2 100644 --- a/md/UBERON/48/UBERON_0006848.md +++ b/md/UBERON/48/UBERON_0006848.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006848 * *Label* = posterior pretectal nucleus - * *Definition* = Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000631] + * *Definition* = Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000631 ] ## Synonyms - * caudal pretectal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000631] - * posterior pretectal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000631] + * caudal pretectal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000631 ] + * posterior pretectal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000631 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0006948.md b/md/UBERON/48/UBERON_0006948.md index 201b09402c..63b065297f 100644 --- a/md/UBERON/48/UBERON_0006948.md +++ b/md/UBERON/48/UBERON_0006948.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006948 * *Label* = efferent duct epithelium - * *Definition* = An epithelium that is part of a efferent duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a efferent duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of efferent ductule of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19195] + * epithelium of efferent ductule of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19195 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [efferent duct](../../UBERON/46/UBERON_0006946.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0007148.md b/md/UBERON/48/UBERON_0007148.md index f8a1680b71..d30124b5ec 100644 --- a/md/UBERON/48/UBERON_0007148.md +++ b/md/UBERON/48/UBERON_0007148.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007148 * *Label* = lumen of hindgut - * *Definition* = An anatomical cavity that surrounded_by a hindgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a hindgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindgut lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54367] + * hindgut lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54367 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0008248.md b/md/UBERON/48/UBERON_0008248.md index e8299a6264..dff6aa7007 100644 --- a/md/UBERON/48/UBERON_0008248.md +++ b/md/UBERON/48/UBERON_0008248.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008248 * *Label* = echinoderm pyloric cecum - * *Definition* = The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002120] + * *Definition* = The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002120 ] ## Synonyms - * pyloric caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002120] - * pyloric cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002120] + * pyloric caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002120 ] + * pyloric cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002120 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0008848.md b/md/UBERON/48/UBERON_0008848.md index ec6f7d767b..545385da20 100644 --- a/md/UBERON/48/UBERON_0008848.md +++ b/md/UBERON/48/UBERON_0008848.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0008948.md b/md/UBERON/48/UBERON_0008948.md index b96e05a4f8..f93b5a4083 100644 --- a/md/UBERON/48/UBERON_0008948.md +++ b/md/UBERON/48/UBERON_0008948.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008948 * *Label* = upper lobe of lung - * *Definition* = A lobe of the lung that is closest to the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A lobe of the lung that is closest to the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: the logical definition must have a clause stating position relative to a lower lobe, otherwise a single lobed side (such as the left lobe in the mouse) trivially classifies as an upper lobe ## Synonyms - * cranial lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lobus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7334] - * lobus superior pulmonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7334] + * cranial lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lobus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7334 ] + * lobus superior pulmonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7334 ] ## Cross-references * FMA:7334 * SCTID:303548008 - * UMLS:C0225756 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lung_Upper_Lobe] + * UMLS:C0225756 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lung_Upper_Lobe ] * galen:UpperLobeOfLung * ncithesaurus:Lung_Upper_Lobe @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anterior_to](../../BSPO/96/BSPO_0000096.md) some [lower lobe of lung](../../UBERON/49/UBERON_0008949.md) and [in_anterior_side_of](../../BSPO/23/BSPO_0000123.md) some [lung](../../UBERON/48/UBERON_0002048.md) and [lobe of lung](../../UBERON/01/UBERON_0000101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009048.md b/md/UBERON/48/UBERON_0009048.md index a9bb4b1191..b61e3c33ee 100644 --- a/md/UBERON/48/UBERON_0009048.md +++ b/md/UBERON/48/UBERON_0009048.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009548.md b/md/UBERON/48/UBERON_0009548.md index ca76aac165..90943e587e 100644 --- a/md/UBERON/48/UBERON_0009548.md +++ b/md/UBERON/48/UBERON_0009548.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009548 * *Label* = hepatic sinusoid of left of lobe of liver - * *Definition* = A hepatic sinusoid that is part of a left lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic sinusoid that is part of a left lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left lobe hepatic sinusoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000709] + * left lobe hepatic sinusoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000709 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic sinusoid](../../UBERON/81/UBERON_0001281.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lobe of liver](../../UBERON/15/UBERON_0001115.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009648.md b/md/UBERON/48/UBERON_0009648.md index f3ee99a276..8e56bb4855 100644 --- a/md/UBERON/48/UBERON_0009648.md +++ b/md/UBERON/48/UBERON_0009648.md @@ -6,13 +6,13 @@ ## Synonyms - * superficial fascia of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63975] + * superficial fascia of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63975 ] ## Cross-references * FMA:63975 * MA:0001252 - * UMLS:C1707991 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue] + * UMLS:C1707991 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue ] * ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [eyelid connective tissue](../../UBERON/81/UBERON_0003581.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypodermis](../../UBERON/72/UBERON_0002072.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009748.md b/md/UBERON/48/UBERON_0009748.md index ba1f179f50..cc744e6638 100644 --- a/md/UBERON/48/UBERON_0009748.md +++ b/md/UBERON/48/UBERON_0009748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009748 * *Label* = cephalic neural fold - * *Definition* = the elevated margins of the neural groove that are located in the future cephalic region of the embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011259] + * *Definition* = the elevated margins of the neural groove that are located in the future cephalic region of the embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011259 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009748 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009848.md b/md/UBERON/48/UBERON_0009848.md index 005dcb2c1a..8433f58965 100644 --- a/md/UBERON/48/UBERON_0009848.md +++ b/md/UBERON/48/UBERON_0009848.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009848 * *Label* = zona limitans intrathalamica - * *Definition* = A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0022006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cls[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dgh[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dph[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:jid[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_15jun06[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11425897[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16452095[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_limitans_intrathalamica] + * *Definition* = A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0022006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cls, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dgh, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dph, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:jid, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_15jun06, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11425897, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16452095, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_limitans_intrathalamica ] * *Comment* = Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 ## Synonyms - * ZLI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0022006[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * MDO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://en.wikipedia.org/wiki/Thalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ZLI organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://en.wikipedia.org/wiki/Thalamus] - * mid-diencephalic organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://en.wikipedia.org/wiki/Thalamus] + * ZLI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0022006, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * MDO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://en.wikipedia.org/wiki/Thalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ZLI organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://en.wikipedia.org/wiki/Thalamus ] + * mid-diencephalic organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://en.wikipedia.org/wiki/Thalamus ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [dorsal thalamus](../../UBERON/03/UBERON_0004703.md) and [adjacent to](../../RO/20/RO_0002220.md) some [ventral thalamus](../../UBERON/00/UBERON_0001900.md) and [anatomical line](../../UBERON/00/UBERON_0006800.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The border between the dorsal and ventral thalamus.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0009948.md b/md/UBERON/48/UBERON_0009948.md index ee4e394b8b..78381e29b4 100644 --- a/md/UBERON/48/UBERON_0009948.md +++ b/md/UBERON/48/UBERON_0009948.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010048.md b/md/UBERON/48/UBERON_0010048.md index 0124d25def..9e07cba8ad 100644 --- a/md/UBERON/48/UBERON_0010048.md +++ b/md/UBERON/48/UBERON_0010048.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010048 * *Label* = Duvernoy's gland - * *Definition* = A gland situated on the upper lip found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Duvernoy's_gland] + * *Definition* = A gland situated on the upper lip found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Duvernoy's_gland ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010148.md b/md/UBERON/48/UBERON_0010148.md index 8b32964840..1a615b5a90 100644 --- a/md/UBERON/48/UBERON_0010148.md +++ b/md/UBERON/48/UBERON_0010148.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010148 * *Label* = mating plug - * *Definition* = A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] + * *Definition* = A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] ## Synonyms - * copulation plug [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] - * copulatory plug [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SPD:0000547] - * sperm plug [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] - * vaginal plug [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] - * sement [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] - * sphragis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mating_plug] + * copulation plug [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] + * copulatory plug [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SPD:0000547 ] + * sperm plug [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] + * vaginal plug [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] + * sement [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] + * sphragis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mating_plug ] ## Cross-references @@ -39,8 +39,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6656 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9397 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9443 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010248.md b/md/UBERON/48/UBERON_0010248.md index 37a6191d19..bd724e3ea6 100644 --- a/md/UBERON/48/UBERON_0010248.md +++ b/md/UBERON/48/UBERON_0010248.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010248 * *Label* = choroidal tapetum fibrosum - * *Definition* = A choroid tapetum lucidum that is an array of extracellular fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum#Classification[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A choroid tapetum lucidum that is an array of extracellular fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum#Classification, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: cows, sheep, goats and horses[WP] ## Synonyms - * fibrous tapetum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9845[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502] + * fibrous tapetum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9845, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502 ] ## Cross-references @@ -32,8 +32,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9788 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9845 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010348.md b/md/UBERON/48/UBERON_0010348.md index 6dc32cb513..d12e76b4fb 100644 --- a/md/UBERON/48/UBERON_0010348.md +++ b/md/UBERON/48/UBERON_0010348.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010548.md b/md/UBERON/48/UBERON_0010548.md index aadf6f7bd9..aa18e63c4d 100644 --- a/md/UBERON/48/UBERON_0010548.md +++ b/md/UBERON/48/UBERON_0010548.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010548 * *Label* = pedal digit 2 metatarsal pre-cartilage condensation - * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe 2 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002045] - * foot digit 2 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 2 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe 2 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002045 ] + * foot digit 2 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2 mesenchyme](../../UBERON/96/UBERON_0005696.md) and [pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010748.md b/md/UBERON/48/UBERON_0010748.md index 5391d5b4e5..e7d0251abc 100644 --- a/md/UBERON/48/UBERON_0010748.md +++ b/md/UBERON/48/UBERON_0010748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010748 * *Label* = lymph node follicle - * *Definition* = A lymphoid follicle that is part of a lymph node. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphoid follicle that is part of a lymph node. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphoid follicle](../../UBERON/44/UBERON_0000444.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010748 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010848.md b/md/UBERON/48/UBERON_0010848.md index 361897cbef..feb39e5e30 100644 --- a/md/UBERON/48/UBERON_0010848.md +++ b/md/UBERON/48/UBERON_0010848.md @@ -7,7 +7,7 @@ ## Synonyms - * radio-ulna cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17711] + * radio-ulna cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17711 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [radius-ulna endochondral element](../../UBERON/02/UBERON_0015002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0010948.md b/md/UBERON/48/UBERON_0010948.md index 068074b941..03499b7d60 100644 --- a/md/UBERON/48/UBERON_0010948.md +++ b/md/UBERON/48/UBERON_0010948.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010948 * *Label* = cleidooccipital muscle - * *Definition* = A muscle organ that attaches_to a clavicle and attaches_to a occipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that attaches_to a clavicle and attaches_to a occipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33% ## Synonyms * cleido-occipitalis * cleido-occipitalis muscle - * cleidooccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002276] + * cleidooccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002276 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [attaches_to](../../RO/71/RO_0002371.md) some [occipital bone](../../UBERON/76/UBERON_0001676.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011048.md b/md/UBERON/48/UBERON_0011048.md index 5fc8526860..572afc05c7 100644 --- a/md/UBERON/48/UBERON_0011048.md +++ b/md/UBERON/48/UBERON_0011048.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011048 * *Label* = obturator internus - * *Definition* = The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_internus_muscle] + * *Definition* = The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_internus_muscle ] * *Comment* = Definition generalized to accommodate AAO class - "Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris." [AAO:0010052] ## Synonyms - * internal obturator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22298] - * musculus obturator internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22298] - * internus obturator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_internus_muscle] - * musculus obturatorius internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_internus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * obturator internus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_internus_muscle] - * obturatorius internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_internus_muscle] + * internal obturator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22298 ] + * musculus obturator internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22298 ] + * internus obturator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_internus_muscle ] + * musculus obturatorius internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_internus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * obturator internus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_internus_muscle ] + * obturatorius internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_internus_muscle ] ## Cross-references * AAO:0010052 * FMA:22298 * SCTID:245025008 - * UMLS:C1518529 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Internus_Muscle] + * UMLS:C1518529 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Internus_Muscle ] * Wikipedia:Obturator_internus_muscle * http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG * ncithesaurus:Obturator_Internus_Muscle @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011148.md b/md/UBERON/48/UBERON_0011148.md index da79757f65..0b1574bea3 100644 --- a/md/UBERON/48/UBERON_0011148.md +++ b/md/UBERON/48/UBERON_0011148.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011148 * *Label* = submucosal gland - * *Definition* = Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003751[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submucosal_glands] + * *Definition* = Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003751, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submucosal_glands ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [submucosa](../../UBERON/09/UBERON_0000009.md) and [mucous gland](../../UBERON/14/UBERON_0000414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011248.md b/md/UBERON/48/UBERON_0011248.md index a6faa3a9e8..6fac3e7e62 100644 --- a/md/UBERON/48/UBERON_0011248.md +++ b/md/UBERON/48/UBERON_0011248.md @@ -6,10 +6,10 @@ ## Synonyms - * procoracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000760] - * anterior coracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * precoracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000760] - * precoracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * procoracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000760 ] + * anterior coracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * precoracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000760 ] + * precoracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilaginous, paired structures located on the anterolateral portions of the zonal area of the pectoral girdle.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of zonal element (AAO:0000936)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011348.md b/md/UBERON/48/UBERON_0011348.md index 27b196aff7..745b6287ff 100644 --- a/md/UBERON/48/UBERON_0011348.md +++ b/md/UBERON/48/UBERON_0011348.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011348 * *Label* = raphe of soft palate - * *Definition* = A palatine raphe that is part of a soft palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A palatine raphe that is part of a soft palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [palatine raphe](../../UBERON/46/UBERON_0011346.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011648.md b/md/UBERON/48/UBERON_0011648.md index 327669cd22..55558b462b 100644 --- a/md/UBERON/48/UBERON_0011648.md +++ b/md/UBERON/48/UBERON_0011648.md @@ -6,8 +6,8 @@ ## Synonyms - * mandibular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000236] - * mandibular muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mandibular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000236 ] + * mandibular muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0011948.md b/md/UBERON/48/UBERON_0011948.md index 8ee0dafa89..f2eb5fab94 100644 --- a/md/UBERON/48/UBERON_0011948.md +++ b/md/UBERON/48/UBERON_0011948.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011948 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0012248.md b/md/UBERON/48/UBERON_0012248.md index a27a92e113..7212fafbc3 100644 --- a/md/UBERON/48/UBERON_0012248.md +++ b/md/UBERON/48/UBERON_0012248.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012248 * *Label* = cervical mucosa - * *Definition* = Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000411] + * *Definition* = Lining of the head of the uterus (cervix); contains large branched glands; does not undergo sloughing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000411 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0012348.md b/md/UBERON/48/UBERON_0012348.md index 0795b4b4c4..60824472be 100644 --- a/md/UBERON/48/UBERON_0012348.md +++ b/md/UBERON/48/UBERON_0012348.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012348 * *Label* = autopod pad - * *Definition* = thin, pigmented, keratinised, hairless epidermis covering subcutaneous, collagenous, and adipose tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Paw#Common_characteristics[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = thin, pigmented, keratinised, hairless epidermis covering subcutaneous, collagenous, and adipose tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Paw#Common_characteristics, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012348 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0012448.md b/md/UBERON/48/UBERON_0012448.md index 24026d1cf0..85eee0441f 100644 --- a/md/UBERON/48/UBERON_0012448.md +++ b/md/UBERON/48/UBERON_0012448.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012448 * *Label* = corpuscles of herbst - * *Definition* = The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar to the Pacinian corpuscle, in the mucous membrane of the tongue, in pits on the beak and in other parts of the bodies of birds. It differs from the Pacinian corpuscle in being smaller, in its capsules being more closely approximated, and in that the axis-cylinder in the central clear space is coated with a continuous row of nuclei. In many wading birds, a large number of Herbst corpuscles are found embedded in pits on the mandibles that are believed to enable birds to sense prey under wet sand or soil. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpuscles_of_Herbst] + * *Definition* = The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar to the Pacinian corpuscle, in the mucous membrane of the tongue, in pits on the beak and in other parts of the bodies of birds. It differs from the Pacinian corpuscle in being smaller, in its capsules being more closely approximated, and in that the axis-cylinder in the central clear space is coated with a continuous row of nuclei. In many wading birds, a large number of Herbst corpuscles are found embedded in pits on the mandibles that are believed to enable birds to sense prey under wet sand or soil. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpuscles_of_Herbst ] ## Synonyms - * corpuscles of herbst [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpuscles_of_Herbst] - * herbst corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpuscles_of_Herbst] + * corpuscles of herbst [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpuscles_of_Herbst ] + * herbst corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpuscles_of_Herbst ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0012648.md b/md/UBERON/48/UBERON_0012648.md index 3d1796316d..d68ba7e8eb 100644 --- a/md/UBERON/48/UBERON_0012648.md +++ b/md/UBERON/48/UBERON_0012648.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012648 * *Label* = ampulla of uterine tube - * *Definition* = The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_uterine_tube] + * *Definition* = The ampulla is the second portion of the uterine tube. It is an intermediate dilated portion, which curves over the ovary. It is the most common site of human fertilization. The word ampulla is from the Latin for flask. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_uterine_tube ] ## Synonyms - * ampulla of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18305] - * ampulla of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18305] - * uterine tube ampulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18305] - * ampulla of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_uterine_tube] - * ampulla of the fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ampulla_of_uterine_tube] - * ampulla of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004285] + * ampulla of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18305 ] + * ampulla of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18305 ] + * uterine tube ampulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18305 ] + * ampulla of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_uterine_tube ] + * ampulla of the fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ampulla_of_uterine_tube ] + * ampulla of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004285 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0013148.md b/md/UBERON/48/UBERON_0013148.md index d56489a518..dcb33e6148 100644 --- a/md/UBERON/48/UBERON_0013148.md +++ b/md/UBERON/48/UBERON_0013148.md @@ -7,7 +7,7 @@ ## Synonyms - * midbrain vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001103] + * midbrain vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001103 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013148 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0013248.md b/md/UBERON/48/UBERON_0013248.md index 849c3d0f49..6a40a541ec 100644 --- a/md/UBERON/48/UBERON_0013248.md +++ b/md/UBERON/48/UBERON_0013248.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013248 * *Label* = paradidymis - * *Definition* = A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paradidymis] + * *Definition* = A small collection of convoluted tubules, situated in front of the lower part of the cord above the head of the epididymis. These tubes are lined with columnar ciliated epithelium, and probably represent the remains of a part of the Wolffian body but are functionless and vestigial. The Wolffian body operates as a kidney (metanephros) in fishes and amphibians, but the corresponding tissue is co-opted to form parts of the male reproductive system in other classes of vertebrate. The paradidymis represents a remnant of an unused, atrophied part of the Wolffian body[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paradidymis ] ## Synonyms - * Waldeyer's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74055] - * organ of Giraldes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74055] + * Waldeyer's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74055 ] + * organ of Giraldes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74055 ] * organ of Giralds ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013248 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0013448.md b/md/UBERON/48/UBERON_0013448.md index ee10ecd17e..c55df76f60 100644 --- a/md/UBERON/48/UBERON_0013448.md +++ b/md/UBERON/48/UBERON_0013448.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013448 * *Label* = sagittal keel - * *Definition* = The Sagittal keel (torus) is a thickening of bone on part or all of the midline of the frontal bone, or parietal bones where they meet along the sagittal suture, or on both bones.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sagittal_keel] + * *Definition* = The Sagittal keel (torus) is a thickening of bone on part or all of the midline of the frontal bone, or parietal bones where they meet along the sagittal suture, or on both bones.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sagittal_keel ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = Sagittal keels occur in Homo erectus and occasionally Homo heidelbergensis, where they probably served as an armour against shock to the roof of the skull, and as the attachment point for the temporalis muscles. Most Homo sapiens lost them likely as part of the general trend toward thinning of the cranial bones during the Pleistocene, to make room for larger brains. However there is a very small portion of modern humans who have this, but its function and etiology are unknown. Patrick Stewart of Star Trek and the martial artist Shi Yan Ming present good examples of modern humans with this feature. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0013648.md b/md/UBERON/48/UBERON_0013648.md index 23a35e0b25..ebc37f7a47 100644 --- a/md/UBERON/48/UBERON_0013648.md +++ b/md/UBERON/48/UBERON_0013648.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013648 * *Label* = masseteric artery - * *Definition* = The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseteric_artery] + * *Definition* = The masseteric artery is small and passes laterally through the mandibular notch to the deep surface of the masseter muscle, which it supplies. It anastomoses with the masseteric branches of the external maxillary artery and with the transverse facial artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseteric_artery ] ## Synonyms - * arteria masseterica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseteric_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria masseterica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseteric_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49739 * SCTID:147864007 - * UMLS:C0226149 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Masseteric_Artery] + * UMLS:C0226149 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Masseteric_Artery ] * Wikipedia:Masseteric_artery * ncithesaurus:Masseteric_Artery @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [masseter muscle](../../UBERON/97/UBERON_0001597.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0013748.md b/md/UBERON/48/UBERON_0013748.md index 381f5cce30..35334860b3 100644 --- a/md/UBERON/48/UBERON_0013748.md +++ b/md/UBERON/48/UBERON_0013748.md @@ -6,7 +6,7 @@ ## Synonyms - * metaphysis of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33767] + * metaphysis of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33767 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metaphysis](../../UBERON/38/UBERON_0001438.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013748 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0014448.md b/md/UBERON/48/UBERON_0014448.md index 13ff0bca09..4908775362 100644 --- a/md/UBERON/48/UBERON_0014448.md +++ b/md/UBERON/48/UBERON_0014448.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014448 * *Label* = feathered ear tuft - * *Definition* = A collection of feathers found on the heads of some owls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A collection of feathers found on the heads of some owls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014448 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0014548.md b/md/UBERON/48/UBERON_0014548.md index 6db7307d97..74aa58259f 100644 --- a/md/UBERON/48/UBERON_0014548.md +++ b/md/UBERON/48/UBERON_0014548.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014548 * *Label* = CA1 stratum pyramidale hippocampi - * *Definition* = CA1 part of stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4110] + * *Definition* = CA1 part of stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4110 ] ## Synonyms - * CA1 part of stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4110[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA1 stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4110] - * CA1 pyramidal cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4110] - * CA1 stratum pyramidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4110] - * CA2 stratum pyramidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sp] - * CA3 stratum pyramidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sp] + * CA1 part of stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4110, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA1 stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4110 ] + * CA1 pyramidal cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4110 ] + * CA1 stratum pyramidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4110 ] + * CA2 stratum pyramidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sp ] + * CA3 stratum pyramidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sp ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus pyramidal layer](../../UBERON/13/UBERON_0002313.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014548 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0014648.md b/md/UBERON/48/UBERON_0014648.md index 706dc1fa09..787e19561b 100644 --- a/md/UBERON/48/UBERON_0014648.md +++ b/md/UBERON/48/UBERON_0014648.md @@ -6,8 +6,8 @@ ## Synonyms - * hemisphere of posterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72256] - * hemisphere of posterior lobe of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72256] + * hemisphere of posterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72256 ] + * hemisphere of posterior lobe of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72256 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior lobe of cerebellum](../../UBERON/02/UBERON_0004002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0014848.md b/md/UBERON/48/UBERON_0014848.md index 25e4afc4b2..3f529d2f34 100644 --- a/md/UBERON/48/UBERON_0014848.md +++ b/md/UBERON/48/UBERON_0014848.md @@ -7,8 +7,8 @@ ## Synonyms * common tendon of quadriceps femoris - * quadriceps femoris tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46900] - * quadriceps tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46900] + * quadriceps femoris tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46900 ] + * quadriceps tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46900 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014848 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_0015048.md b/md/UBERON/48/UBERON_0015048.md index 1a6c9a3b63..975b8f7780 100644 --- a/md/UBERON/48/UBERON_0015048.md +++ b/md/UBERON/48/UBERON_0015048.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015048 * *Label* = basioccipital endochondral element - * *Definition* = A basioccipital bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A basioccipital bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * basioccipital element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * basioccipital skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * basioccipital element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * basioccipital skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [basioccipital bone](../../UBERON/92/UBERON_0001692.md)or[basioccipital cartilage element](../../UBERON/09/UBERON_0006209.md)or[basioccipital pre-cartilage condensation](../../UBERON/97/UBERON_0009197.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015048 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000248.md b/md/UBERON/48/UBERON_2000248.md index c72e494ef7..eb9504ccf4 100644 --- a/md/UBERON/48/UBERON_2000248.md +++ b/md/UBERON/48/UBERON_2000248.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000348.md b/md/UBERON/48/UBERON_2000348.md index 21667eff1a..5a46f32925 100644 --- a/md/UBERON/48/UBERON_2000348.md +++ b/md/UBERON/48/UBERON_2000348.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000348 * *Label* = exoccipital posteroventral region - * *Definition* = Endochondral bone which is the posterodorsal region of the basioccipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone which is the posterodorsal region of the basioccipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000448.md b/md/UBERON/48/UBERON_2000448.md index 0a2a9d87ba..be2def3e67 100644 --- a/md/UBERON/48/UBERON_2000448.md +++ b/md/UBERON/48/UBERON_2000448.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000648.md b/md/UBERON/48/UBERON_2000648.md index f99c51b601..e5d418eab5 100644 --- a/md/UBERON/48/UBERON_2000648.md +++ b/md/UBERON/48/UBERON_2000648.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000648 * *Label* = dorsal fin musculature - * *Definition* = Musculature that is part of the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000648[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Musculature that is part of the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000648, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage musculature](../../UBERON/71/UBERON_0007271.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin](../../UBERON/97/UBERON_0003097.md) ## Other Logical Axioms @@ -35,9 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2000648 + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000748.md b/md/UBERON/48/UBERON_2000748.md index 224d3a7ea2..75cae05d11 100644 --- a/md/UBERON/48/UBERON_2000748.md +++ b/md/UBERON/48/UBERON_2000748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000748 * *Label* = epaxial region somite 6 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2000848.md b/md/UBERON/48/UBERON_2000848.md index 4fed7fe0a8..8f518941d7 100644 --- a/md/UBERON/48/UBERON_2000848.md +++ b/md/UBERON/48/UBERON_2000848.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000848[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000848, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/48/UBERON_2001048.md b/md/UBERON/48/UBERON_2001048.md index 163b00e73c..2fcfdc1563 100644 --- a/md/UBERON/48/UBERON_2001048.md +++ b/md/UBERON/48/UBERON_2001048.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001048[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001048, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/48/UBERON_2001148.md b/md/UBERON/48/UBERON_2001148.md index bc43187174..879875bdfa 100644 --- a/md/UBERON/48/UBERON_2001148.md +++ b/md/UBERON/48/UBERON_2001148.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001148 * *Label* = tooth 1D - * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 1 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001248.md b/md/UBERON/48/UBERON_2001248.md index d1b50ad517..b12ab44179 100644 --- a/md/UBERON/48/UBERON_2001248.md +++ b/md/UBERON/48/UBERON_2001248.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001348.md b/md/UBERON/48/UBERON_2001348.md index d088d4300a..1e8db026d1 100644 --- a/md/UBERON/48/UBERON_2001348.md +++ b/md/UBERON/48/UBERON_2001348.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001548.md b/md/UBERON/48/UBERON_2001548.md index dab025c3fc..0254314574 100644 --- a/md/UBERON/48/UBERON_2001548.md +++ b/md/UBERON/48/UBERON_2001548.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001648.md b/md/UBERON/48/UBERON_2001648.md index 81df36574d..7b7861dd01 100644 --- a/md/UBERON/48/UBERON_2001648.md +++ b/md/UBERON/48/UBERON_2001648.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001648 * *Label* = basihyal tooth plate - * *Definition* = Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basihyal toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001648] + * basihyal toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001648 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001748.md b/md/UBERON/48/UBERON_2001748.md index 0a3115ba2a..4d31b039e1 100644 --- a/md/UBERON/48/UBERON_2001748.md +++ b/md/UBERON/48/UBERON_2001748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001748 * *Label* = superficial ophthalmic nerve foramen - * *Definition* = Foramen through which the superficial ophthalmic nerve passes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen through which the superficial ophthalmic nerve passes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001848.md b/md/UBERON/48/UBERON_2001848.md index 6a11bb9b3c..0607469fdb 100644 --- a/md/UBERON/48/UBERON_2001848.md +++ b/md/UBERON/48/UBERON_2001848.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001848 * *Label* = ventral hypohyal-urohyal joint - * *Definition* = Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [urohyal](../../UBERON/52/UBERON_2000452.md) and [core#connects](../../ts/core#connects.md) some [ventral hypohyal bone](../../UBERON/00/UBERON_2000300.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2001948.md b/md/UBERON/48/UBERON_2001948.md index d8af479eee..ebff2ddf57 100644 --- a/md/UBERON/48/UBERON_2001948.md +++ b/md/UBERON/48/UBERON_2001948.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001948 * *Label* = anal-fin hook - * *Definition* = Process that is part of the anal fin lepidotrichium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is part of the anal fin lepidotrichium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anal fin hook [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001948] + * anal fin hook [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001948 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2002248.md b/md/UBERON/48/UBERON_2002248.md index 212cc7e925..54906f9447 100644 --- a/md/UBERON/48/UBERON_2002248.md +++ b/md/UBERON/48/UBERON_2002248.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002248 * *Label* = supratemporal commissure - * *Definition* = Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI: 10.1002/cne.900280102] + * *Definition* = Lateral line canal that that crosses the supratemporal region posterior to the openings of the endolymphatic ducts and connects the lateral canals of each side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI: 10.1002/cne.900280102 ] * *Comment* = Not clear what the taxon constraints are here. The cited reference discusses two species of dogfish. ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2005048.md b/md/UBERON/48/UBERON_2005048.md index fe0748b867..fa5aed022d 100644 --- a/md/UBERON/48/UBERON_2005048.md +++ b/md/UBERON/48/UBERON_2005048.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005048 * *Label* = primitive prosencephalic artery - * *Definition* = Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PPrA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005048] + * PPrA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005048 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2005248.md b/md/UBERON/48/UBERON_2005248.md index 79f83ad856..44ceaf9be8 100644 --- a/md/UBERON/48/UBERON_2005248.md +++ b/md/UBERON/48/UBERON_2005248.md @@ -6,7 +6,7 @@ ## Synonyms - * TCB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005248] + * TCB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005248 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_2007048.md b/md/UBERON/48/UBERON_2007048.md index 5ca04cc613..de58d04b78 100644 --- a/md/UBERON/48/UBERON_2007048.md +++ b/md/UBERON/48/UBERON_2007048.md @@ -6,7 +6,7 @@ ## Synonyms - * ventral intermandibulari posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007048[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ventral intermandibulari posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007048, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3000348.md b/md/UBERON/48/UBERON_3000348.md index ddb269e8fb..1fe20aef02 100644 --- a/md/UBERON/48/UBERON_3000348.md +++ b/md/UBERON/48/UBERON_3000348.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3000448.md b/md/UBERON/48/UBERON_3000448.md index 169dfd43ee..b5ddd71ebf 100644 --- a/md/UBERON/48/UBERON_3000448.md +++ b/md/UBERON/48/UBERON_3000448.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000448 * *Label* = posterior maxillary process - * *Definition* = Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3000648.md b/md/UBERON/48/UBERON_3000648.md index 15a937b2aa..f8b7e0311d 100644 --- a/md/UBERON/48/UBERON_3000648.md +++ b/md/UBERON/48/UBERON_3000648.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000648 * *Label* = crista praeopercularis - * *Definition* = Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3000748.md b/md/UBERON/48/UBERON_3000748.md index 1d1a7cb324..f846fab769 100644 --- a/md/UBERON/48/UBERON_3000748.md +++ b/md/UBERON/48/UBERON_3000748.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000748 * *Label* = suprascapula - * *Definition* = Paired, cartilaginous elements located in the dorsolateral shoulder region. Each suprascapula is a flat broad blade that extends medially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, cartilaginous elements located in the dorsolateral shoulder region. Each suprascapula is a flat broad blade that extends medially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * adscapulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000748] - * episcapulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000748] - * omolita [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000748] - * scapula major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000748] + * adscapulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000748 ] + * episcapulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000748 ] + * omolita [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000748 ] + * scapula major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000748 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3000948.md b/md/UBERON/48/UBERON_3000948.md index 9e750cd2b1..52c7540439 100644 --- a/md/UBERON/48/UBERON_3000948.md +++ b/md/UBERON/48/UBERON_3000948.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000948 * *Label* = articular process - * *Definition* = Paired processes located on the anterior end of the cricoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired processes located on the anterior end of the cricoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus articularis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000948] + * processus articularis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000948 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3010748.md b/md/UBERON/48/UBERON_3010748.md index 52adb83997..135e18b3c2 100644 --- a/md/UBERON/48/UBERON_3010748.md +++ b/md/UBERON/48/UBERON_3010748.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010748 * *Label* = M. coccygeoiliacus - * *Definition* = Originates on the lateral surface of the urostyle and passes ventral to the sacral diapophysis to insert on the anterior and medial surfaces of the ilial shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the lateral surface of the urostyle and passes ventral to the sacral diapophysis to insert on the anterior and medial surfaces of the ilial shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_3011048.md b/md/UBERON/48/UBERON_3011048.md index 9ee9e6094f..3889c4bc72 100644 --- a/md/UBERON/48/UBERON_3011048.md +++ b/md/UBERON/48/UBERON_3011048.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/48/UBERON_4200048.md b/md/UBERON/48/UBERON_4200048.md index 4451bd1314..9cf98c8daf 100644 --- a/md/UBERON/48/UBERON_4200048.md +++ b/md/UBERON/48/UBERON_4200048.md @@ -32,7 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0000049.md b/md/UBERON/49/UBERON_0000049.md index 6450250a9c..4eb8e3128f 100644 --- a/md/UBERON/49/UBERON_0000049.md +++ b/md/UBERON/49/UBERON_0000049.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000049 * *Label* = spherical lensed eye - * *Definition* = simple eye that consists of a lens of one refractive index [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipepedia:Eye#Spherical_lensed_eye] + * *Definition* = simple eye that consists of a lens of one refractive index [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipepedia:Eye#Spherical_lensed_eye ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0000349.md b/md/UBERON/49/UBERON_0000349.md index d7d7c7ac1d..fcb4a45527 100644 --- a/md/UBERON/49/UBERON_0000349.md +++ b/md/UBERON/49/UBERON_0000349.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000349 * *Label* = limbic system - * *Definition* = A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BIRNLEX:Limbic_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limbic_system] + * *Definition* = A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BIRNLEX:Limbic_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limbic_system ] * *Comment* = obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. ## Synonyms @@ -20,7 +20,7 @@ * NeuroNames:2055 * OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA * SCTID:361342009 - * UMLS:C0023715 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Limbic_System] + * UMLS:C0023715 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Limbic_System ] * Wikipedia:Limbic_system * http://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0000449.md b/md/UBERON/49/UBERON_0000449.md index 090067e91e..485bb002dc 100644 --- a/md/UBERON/49/UBERON_0000449.md +++ b/md/UBERON/49/UBERON_0000449.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000449 * *Label* = decidual cell - * *Definition* = Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Decidual_cells] + * *Definition* = Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Decidual_cells ] * *Comment* = request from CL ## Synonyms @@ -13,7 +13,7 @@ * BTO:0002770 * FMA:86480 - * UMLS:C1511740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Decidual_Cell] + * UMLS:C1511740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Decidual_Cell ] * Wikipedia:Decidual_cells * ncithesaurus:Decidual_Cell @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0000949.md b/md/UBERON/49/UBERON_0000949.md index e9ad2e5bd2..71c7d2b724 100644 --- a/md/UBERON/49/UBERON_0000949.md +++ b/md/UBERON/49/UBERON_0000949.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000949 * *Label* = endocrine system - * *Definition* = Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:endocrine+system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endocrine_system] + * *Definition* = Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:endocrine+system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endocrine_system ] ## Synonyms - * endocrine glandular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002224] + * endocrine glandular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002224 ] * endocrine system * systema endocrinum @@ -25,7 +25,7 @@ * MESH:A06 * SCTID:278876000 * TAO:0001158 - * UMLS:C0014136 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endocrine_System] + * UMLS:C0014136 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endocrine_System ] * VHOG:0000098 * Wikipedia:Endocrine_system * XAO:0000158 @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable_of](../../RO/15/RO_0002215.md) some [endocrine process](../../GO/86/GO_0050886.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Multicellular organisms have complex endocrine systems, allowing responses to environmental stimuli, regulation of development, reproduction, and homeostasis. Nuclear receptors (NRs), a metazoan-specific family of ligand-activated transcription factors, play central roles in endocrine responses, as intermediates between signaling molecules and target genes. The NR family includes ligand-bound and orphan receptors, that is, receptors with no known ligand or for which there is no ligand Pocket. Understanding NR evolution has been further improved by comparison of several completed genomes, particularly those of deuterostomes and ecdysozoans. In contrast, evolution of NR ligands is still much debated. One hypothesis proposes that several independent gains and losses of ligand-binding ability in NRs occurred in protostomes and deuterostomes. A second hypothesis, pertaining to the NR3 subfamily (vertebrate steroid hormone receptors and estrogen related receptor), proposes that before the divergence of protostomes and deuterostomes, there was an ancestral steroid receptor (AncSR) that was ligand-activated and that orphan receptors secondarily lost the ability to bind a ligand. (...) Our analysis reveals that steroidogenesis has been independently elaborated in the 3 main bilaterian lineages (...).[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endocrine * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001049.md b/md/UBERON/49/UBERON_0001049.md index 60db5df69c..99d015bcb7 100644 --- a/md/UBERON/49/UBERON_0001049.md +++ b/md/UBERON/49/UBERON_0001049.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001049 * *Label* = neural tube - * *Definition* = In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_tube] + * *Definition* = In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_tube ] * *Comment* = The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium[GO:0021915] ## Synonyms * neural primordium * presumptive central nervous system - * tubus neuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tubus neuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * NeuroNames:1365 * SCTID:362852000 * TAO:0001135 - * UMLS:C0231024 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Tube] + * UMLS:C0231024 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Tube ] * VHOG:0000307 * Wikipedia:Neural_tube * XAO:0003204 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dorsal tubular structure in the vertebrate embryo that develops into the brain and spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001149.md b/md/UBERON/49/UBERON_0001149.md index 344eb111c8..c97a3b6be4 100644 --- a/md/UBERON/49/UBERON_0001149.md +++ b/md/UBERON/49/UBERON_0001149.md @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001249.md b/md/UBERON/49/UBERON_0001249.md index d91dd30ac2..97a57c4587 100644 --- a/md/UBERON/49/UBERON_0001249.md +++ b/md/UBERON/49/UBERON_0001249.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001249 * *Label* = spleen lymphoid follicle - * *Definition* = the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008470[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/6] + * *Definition* = the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008470, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/6 ] ## Synonyms - * Malpighian body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15843] - * lymphatic follicle of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15843] - * lymphoid follicle of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15843] - * lymphoid nodule of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15843] - * spleen B cell follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * spleen lymphoid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002672] - * splenic B cell follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * splenic lymphatic follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15843] + * Malpighian body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15843 ] + * lymphatic follicle of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15843 ] + * lymphoid follicle of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15843 ] + * lymphoid nodule of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15843 ] + * spleen B cell follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * spleen lymphoid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002672 ] + * splenic B cell follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * splenic lymphatic follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15843 ] * splenic lymphoid follicle - * spleen lymphoid nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002672] + * spleen lymphoid nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002672 ] ## Cross-references * MA:0002672 * SCTID:35845000 - * UMLS:C1519475 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Lymphoid_Follicle] + * UMLS:C1519475 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Lymphoid_Follicle ] * ncithesaurus:Splenic_Lymphoid_Follicle ## Subsets @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphoid follicle](../../UBERON/44/UBERON_0000444.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003969 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001349.md b/md/UBERON/49/UBERON_0001349.md index 527417e389..a7407a934d 100644 --- a/md/UBERON/49/UBERON_0001349.md +++ b/md/UBERON/49/UBERON_0001349.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001349 * *Label* = vestibule - * *Definition* = Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20192[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibule_(disambiguation)#Anatomy] + * *Definition* = Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20192, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibule_(disambiguation)#Anatomy ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001449.md b/md/UBERON/49/UBERON_0001449.md index f07a8fa0e8..1fbaedb464 100644 --- a/md/UBERON/49/UBERON_0001449.md +++ b/md/UBERON/49/UBERON_0001449.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001449 * *Label* = phalanx of pes - * *Definition* = A phalanx that is part of a hindlimb autopod[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Phalanges_of_the_foot[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A phalanx that is part of a hindlimb autopod[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Phalanges_of_the_foot, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * digital bone of pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000305] + * digital bone of pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000305 ] * pedal phalanx - * phalanx of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * phalanx of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * phalanx of hind digit * phalanx of pes - * phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24493] - * toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24493] - * phalanges of hind digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000930[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24493 ] + * toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24493 ] + * phalanges of hind digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000930, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:24493 * MA:0000305 * SCTID:302533005 - * UMLS:C0584876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Phalanx] + * UMLS:C0584876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Phalanx ] * Wikipedia:Phalanges_of_the_foot * ncithesaurus:Foot_Phalanx * ncithesaurus:Phalanx_of_the_Foot @@ -49,7 +49,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the five digits of the pes. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the pes, in a medial to lateral sequence, is 2(1)-2-3-4(3)-3(2).[AAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004272 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001549.md b/md/UBERON/49/UBERON_0001549.md index 118d9eb1ea..7ae2e56b13 100644 --- a/md/UBERON/49/UBERON_0001549.md +++ b/md/UBERON/49/UBERON_0001549.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001549 * *Label* = dorsal metatarsal vein - * *Definition* = The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_metatarsal_veins] + * *Definition* = The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_metatarsal_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * metatarsal vein - * venae metatarsales dorsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_metatarsal_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae metatarsales dorsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_metatarsal_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:44377 * MA:0002105 - * UMLS:C0835053 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Metatarsal_Vein] + * UMLS:C0835053 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Metatarsal_Vein ] * Wikipedia:Dorsal_metatarsal_veins * ncithesaurus:Dorsal_Metatarsal_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001649.md b/md/UBERON/49/UBERON_0001649.md index 412aad33b2..31143868c8 100644 --- a/md/UBERON/49/UBERON_0001649.md +++ b/md/UBERON/49/UBERON_0001649.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001649 * *Label* = glossopharyngeal nerve - * *Definition* = Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glossopharyngeal_nerve] + * *Definition* = Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glossopharyngeal_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Glossopharyngeal nerve [IX] - * glossopharyngeal IX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000709] + * glossopharyngeal IX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000709 ] * glossopharyngeal IX nerve * glossopharyngeal nerve tree - * nervus glossopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000668] - * nervus glossopharyngeus [ix] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50870[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus glossopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000668 ] + * nervus glossopharyngeus [ix] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50870, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ninth cranial nerve - * 9n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_899[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 9n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_899, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-IX * cranial nerve IX - * nerve IX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:701] - * nervus glossopharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glossopharyngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nerve IX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:701 ] + * nervus glossopharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glossopharyngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,13 +35,13 @@ * MA:0001093 * MESH:A08.800.800.120.290 * NIF_GrossAnatomy:birnlex_899 - * NeuroNames:701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_899] + * NeuroNames:701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_899 ] * OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA * SCTID:362465002 * TAO:0000668 - * UMLS:C0017679 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_899] - * UMLS:C0017679 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glossopharyngeal_Nerve] - * UMLS:C1305752 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_899] + * UMLS:C0017679 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_899 ] + * UMLS:C0017679 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glossopharyngeal_Nerve ] + * UMLS:C1305752 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_899 ] * VHOG:0000701 * Wikipedia:Glossopharyngeal_nerve * XAO:0003096 @@ -73,8 +73,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small nerve consisting of branchiomotor and visceral efferent and afferent fibers which innervate the m. subarculais rectus I, dorsal buccal mucosa, and the tongue.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001749.md b/md/UBERON/49/UBERON_0001749.md index 761fe79479..713315cf18 100644 --- a/md/UBERON/49/UBERON_0001749.md +++ b/md/UBERON/49/UBERON_0001749.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001749 * *Label* = parenchyma of parathyroid gland - * *Definition* = A parenchyma that is part of a parathyroid gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a parathyroid gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * parathyroid gland parenchyma - * parathyroid parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parenchyma of parathyroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * parathyroid parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parenchyma of parathyroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parathyroid gland](../../UBERON/32/UBERON_0001132.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001849.md b/md/UBERON/49/UBERON_0001849.md index 1835955aac..8b1d885fac 100644 --- a/md/UBERON/49/UBERON_0001849.md +++ b/md/UBERON/49/UBERON_0001849.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001849 * *Label* = membranous labyrinth - * *Definition* = Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Membranous_labyrinth] + * *Definition* = Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. The membranous labyrinth is lodged within the bony labyrinth and has the same general form; it is, however, considerably smaller and is partly separated from the bony walls by a quantity of fluid, the perilymph.[FMA, WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Membranous_labyrinth ] * *Comment* = inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the EMAPA term 'labyrinth' belong, we place them here for now ## Synonyms - * labyrinthus membranaceus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Membranous_labyrinth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labyrinthus membranaceus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Membranous_labyrinth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:61022 * MA:0000242 * SCTID:263790009 - * UMLS:C0458700 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Membranous_Labyrinth] + * UMLS:C0458700 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Membranous_Labyrinth ] * VHOG:0000729 * Wikipedia:Membranous_labyrinth * XAO:0000194 @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The labyrinth, or inner ear, evolved very early in vertebrate history and, with many variations in configuration but none of basic design and function, has been retained by all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010113 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0001949.md b/md/UBERON/49/UBERON_0001949.md index 44cc3b2236..13add12000 100644 --- a/md/UBERON/49/UBERON_0001949.md +++ b/md/UBERON/49/UBERON_0001949.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001949 * *Label* = gingival epithelium - * *Definition* = A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004998] + * *Definition* = A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004998 ] * *Comment* = In humans: 15% orthokeratinized, 75% parakeratinized, 10% non-keratinized; diurnal; decreased keratinization with age. Note that in FMA this is classified as keratinized squamous - this perhaps refers to the epithelium of the attached or free gingiva ## Synonyms - * epithelial tissue of gingiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of gingiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * epithelium of gingiva - * gingiva epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gingiva epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gingiva epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gingiva epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * BTO:0004998 * FMA:62423 * MA:0001576 - * UMLS:C1179154 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gingival_Epithelium] + * UMLS:C1179154 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gingival_Epithelium ] * ncithesaurus:Gingival_Epithelium ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gingiva](../../UBERON/28/UBERON_0001828.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002049.md b/md/UBERON/49/UBERON_0002049.md index 069b3a5701..77d2ff829d 100644 --- a/md/UBERON/49/UBERON_0002049.md +++ b/md/UBERON/49/UBERON_0002049.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002049 * *Label* = vasculature - * *Definition* = an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005249] + * *Definition* = an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005249 ] * *Comment* = see also: vascular system. Consider merging? ## Synonyms - * vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69050] + * vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69050 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002149.md b/md/UBERON/49/UBERON_0002149.md index 627d1955ea..82a96af60f 100644 --- a/md/UBERON/49/UBERON_0002149.md +++ b/md/UBERON/49/UBERON_0002149.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002149 * *Label* = superior salivatory nucleus - * *Definition* = visceromotor cranial nerve nucleus located in the pontine tegmentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_salivatory_nucleus] + * *Definition* = visceromotor cranial nerve nucleus located in the pontine tegmentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_salivatory_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * superior salivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021753] - * nucleus salivarius superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:590[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:590[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:590[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:590[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior salivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021753 ] + * nucleus salivarius superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:590, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:590, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:590, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:590, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,9 +23,9 @@ * FMA:72482 * MA:0001027 * NIF_GrossAnatomy:birnlex_1131 - * NeuroNames:590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1131] + * NeuroNames:590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1131 ] * SCTID:369028007 - * UMLS:C0175447 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1131] + * UMLS:C0175447 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1131 ] * Wikipedia:Superior_salivatory_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002249.md b/md/UBERON/49/UBERON_0002249.md index 68b7eef39a..d9f298cfd3 100644 --- a/md/UBERON/49/UBERON_0002249.md +++ b/md/UBERON/49/UBERON_0002249.md @@ -12,7 +12,7 @@ * FMA:77142 * MA:0001999 - * UMLS:C0687034 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Median_Artery] + * UMLS:C0687034 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Median_Artery ] * ncithesaurus:Median_Artery ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002349.md b/md/UBERON/49/UBERON_0002349.md index ee1a763411..6d98152e7e 100644 --- a/md/UBERON/49/UBERON_0002349.md +++ b/md/UBERON/49/UBERON_0002349.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002349 * *Label* = myocardium - * *Definition* = middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myocardium] + * *Definition* = middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myocardium ] * *Comment* = TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium ## Synonyms * heart myocardium - * muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9462] - * cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001319] - * heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001319] - * heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9462] + * muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9462 ] + * cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001319 ] + * heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001319 ] + * heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9462 ] ## Cross-references @@ -33,7 +33,7 @@ * RETIRED_EHDAA2:0001220 * SCTID:362012001 * TAO:0001319 - * UMLS:C0027061 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myocardium] + * UMLS:C0027061 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myocardium ] * VHOG:0000083 * Wikipedia:Myocardium * XAO:0000065 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The middle layer of the heart, consisting of cardiac muscle.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = myocardial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002549.md b/md/UBERON/49/UBERON_0002549.md index 0df1d1858d..498b699cf2 100644 --- a/md/UBERON/49/UBERON_0002549.md +++ b/md/UBERON/49/UBERON_0002549.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002549 * *Label* = ventral trigeminal tract - * *Definition* = The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_trigeminothalamic_tract] + * *Definition* = The Anterior trigeminothalamic tract (or ventral trigeminothalamic tract) serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_trigeminothalamic_tract ] ## Synonyms - * anterior trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506] - * tractus trigeminothalamicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigeminal lemniscus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506] - * ventral crossed tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506] + * anterior trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506 ] + * tractus trigeminothalamicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigeminal lemniscus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506 ] + * ventral crossed tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506 ] * ventral secondary ascending tract of V - * ventral trigeminal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506] - * ventral trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72506] - * tractus trigeminalis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:613[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus trigeminothalamicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_trigeminothalamic_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral secondary ascending tract of V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:613] - * ventral trigeminal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_trigeminothalamic_tract] - * ventral trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_trigeminothalamic_tract] + * ventral trigeminal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506 ] + * ventral trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72506 ] + * tractus trigeminalis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:613, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus trigeminothalamicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_trigeminothalamic_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral secondary ascending tract of V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:613 ] + * ventral trigeminal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_trigeminothalamic_tract ] + * ventral trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_trigeminothalamic_tract ] ## Cross-references * BAMS:v5 * FMA:72506 * NIF_GrossAnatomy:birnlex_1001 - * NeuroNames:613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1001] - * UMLS:C0175460 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1001] + * NeuroNames:613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1001 ] + * UMLS:C0175460 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1001 ] * Wikipedia:Anterior_trigeminal_tract ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002649.md b/md/UBERON/49/UBERON_0002649.md index b68a891899..b22be26eb9 100644 --- a/md/UBERON/49/UBERON_0002649.md +++ b/md/UBERON/49/UBERON_0002649.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002649 * *Label* = dorsolateral fasciculus of medulla - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lissauer's_tract] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lissauer's_tract ] ## Synonyms - * dorsolateral fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1267] - * dorsolateral tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72616] - * lissauer's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72616] - * posterolateral fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72616] - * posterolateral tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72616] + * dorsolateral fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1267 ] + * dorsolateral tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72616 ] + * lissauer's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72616 ] + * posterolateral fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72616 ] + * posterolateral tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72616 ] * tract of lissauer - * tractus posterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72616[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus posterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72616, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * zone of lissauer - * dorsolateral fasciculus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:782] - * fasciculus dorsolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * zona Lissauer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsolateral fasciculus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:782 ] + * fasciculus dorsolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * zona Lissauer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,10 +25,10 @@ * BAMS:dfm * FMA:72616 * NIF_GrossAnatomy:birnlex_1267 - * NeuroNames:782 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1267] + * NeuroNames:782 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1267 ] * SCTID:369287009 - * UMLS:C0228587 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1267] - * UMLS:C0228587 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tract_of_Lissauer] + * UMLS:C0228587 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1267 ] + * UMLS:C0228587 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tract_of_Lissauer ] * Wikipedia:Lissauer's_tract * ncithesaurus:Tract_of_Lissauer @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002749.md b/md/UBERON/49/UBERON_0002749.md index 1a8fda91f1..350b3e24a6 100644 --- a/md/UBERON/49/UBERON_0002749.md +++ b/md/UBERON/49/UBERON_0002749.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002749 * *Label* = regional part of cerebellar cortex - * *Definition* = A regional part of brain that is part of a cerebellar cortex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a cerebellar cortex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cerebellar cortical segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76924] - * segment of cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1571] + * cerebellar cortical segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76924 ] + * segment of cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1571 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar cortex](../../UBERON/29/UBERON_0002129.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002849.md b/md/UBERON/49/UBERON_0002849.md index 00c31dbc69..890f983726 100644 --- a/md/UBERON/49/UBERON_0002849.md +++ b/md/UBERON/49/UBERON_0002849.md @@ -6,15 +6,15 @@ ## Synonyms - * sixth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6326] - * sixth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6326] + * sixth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6326 ] + * sixth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6326 ] ## Cross-references * EMAPA:25178 * FMA:6326 * NIF_GrossAnatomy:birnlex_2616 - * UMLS:C0501704 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2616] + * UMLS:C0501704 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2616 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0002949.md b/md/UBERON/49/UBERON_0002949.md index 133b3f3f1f..cd8c9e45f4 100644 --- a/md/UBERON/49/UBERON_0002949.md +++ b/md/UBERON/49/UBERON_0002949.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002949 * *Label* = tectospinal tract - * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tectospinal_tract] + * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tectospinal_tract ] * *Comment* = AO notes: NIF and FMA differ in placement (spinal cord vs medulla) ## Synonyms - * Held's bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72620] - * tectospinal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72620] - * tectospinal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2769] - * tectospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2769] - * tectospinal tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:786] - * tractus tectospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2769[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus tectospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tectospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tratto tettospinale@it [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2769] + * Held's bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72620 ] + * tectospinal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72620 ] + * tectospinal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2769 ] + * tectospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2769 ] + * tectospinal tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:786 ] + * tractus tectospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2769, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus tectospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tectospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tratto tettospinale@it [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2769 ] ## Cross-references @@ -24,8 +24,8 @@ * BM:TSp * FMA:72620 * NIF_GrossAnatomy:birnlex_759 - * NeuroNames:786 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_759] - * UMLS:C0228553 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_759] + * NeuroNames:786 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_759 ] + * UMLS:C0228553 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_759 ] * Wikipedia:Tectospinal_tract * http://upload.wikimedia.org/wikipedia/commons/b/be/Gray670.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray670.png/200px-Gray670.png @@ -39,8 +39,8 @@ * [tract of brain](../../UBERON/02/UBERON_0007702.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter](../../UBERON/16/UBERON_0002316.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Equivalencies @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003049.md b/md/UBERON/49/UBERON_0003049.md index e60bfdc989..11e3f5833e 100644 --- a/md/UBERON/49/UBERON_0003049.md +++ b/md/UBERON/49/UBERON_0003049.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003049 * *Label* = collagen and cuticulin-based cuticle - * *Definition* = A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WA:dh[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WA:dh, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that GO has a superclass protein-based cuticle development // taxonomic restriction may be too strict ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:WBbt_0005755 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003149.md b/md/UBERON/49/UBERON_0003149.md index 4b54c0b2e2..f5856403c6 100644 --- a/md/UBERON/49/UBERON_0003149.md +++ b/md/UBERON/49/UBERON_0003149.md @@ -7,7 +7,7 @@ ## Synonyms - * abdominal tergite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004476] + * abdominal tergite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004476 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004476 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0001005 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003149 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/49/UBERON_0003249.md b/md/UBERON/49/UBERON_0003249.md index 11f824427e..6b2d1b599d 100644 --- a/md/UBERON/49/UBERON_0003249.md +++ b/md/UBERON/49/UBERON_0003249.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003249 * *Label* = epithelium of otic placode - * *Definition* = An epithelium that is part of a otic placode [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a otic placode [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = editor note - check ZFA, placemeant, appears to refer to both adult structures and primordium ## Synonyms - * epithelial tissue of otic placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * otic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * otic placode epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * otic placode epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of otic placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * otic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * otic placode epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * otic placode epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [otic placode](../../UBERON/69/UBERON_0003069.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003449.md b/md/UBERON/49/UBERON_0003449.md index d9a5f400a8..ae592d71d8 100644 --- a/md/UBERON/49/UBERON_0003449.md +++ b/md/UBERON/49/UBERON_0003449.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003449 * *Label* = tail intervertebral disc - * *Definition* = An intervertebral disk that is part of a tail [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An intervertebral disk that is part of a tail [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * intervertebral disc of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intervertebral disc of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intervertebral disk of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intervertebral disk of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region intervertebral disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region spinal disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal disc of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal disc of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tail intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tail spinal disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intervertebral disc of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intervertebral disc of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intervertebral disk of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intervertebral disk of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region intervertebral disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region spinal disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal disc of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal disc of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tail intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tail spinal disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intervertebral disk](../../UBERON/66/UBERON_0001066.md) and [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003549.md b/md/UBERON/49/UBERON_0003549.md index 3928ea3766..449e3f0589 100644 --- a/md/UBERON/49/UBERON_0003549.md +++ b/md/UBERON/49/UBERON_0003549.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003549 * *Label* = brain pia mater - * *Definition* = the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009026] + * *Definition* = the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009026 ] ## Synonyms - * brain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * brain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:32667 * EV:0100315 * MA:0000816 - * UMLS:C1706994 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain_Pia_Mater] + * UMLS:C1706994 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain_Pia_Mater ] * VHOG:0000470 * ncithesaurus:Brain_Pia_Mater @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The innermost of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003649.md b/md/UBERON/49/UBERON_0003649.md index dd1cb8c69e..f95d172483 100644 --- a/md/UBERON/49/UBERON_0003649.md +++ b/md/UBERON/49/UBERON_0003649.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003649 * *Label* = metacarpal bone of digit 5 - * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metacarpal bone that distally_connected_to a proximal phalanx of manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note FMA also has FMA:36782 ## Synonyms - * 5 th digit of hand metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th digit of hand metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * 5 th finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth finger metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fifth metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23903] + * 5 th digit of hand metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th digit of hand metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * 5 th finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth finger metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fifth metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23903 ] * finger 5 metacarpus - * hand digit 5 metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit 5 metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hand digit 5 metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit 5 metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual digit 5 metacarpus * metacarpal 5 * metacarpal V - * metacarpal bone digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001368] - * metacarpal bone of 5 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of 5 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal bone of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 5 th digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of 5 th finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metacarpal of hand digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metacarpal bone digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001368 ] + * metacarpal bone of 5 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of 5 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal bone of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 5 th digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of 5 th finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metacarpal of hand digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,7 +38,7 @@ * FMA:23903 * MA:0001368 * SCTID:263402008 - * UMLS:C1711224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone_Digit_5] + * UMLS:C1711224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone_Digit_5 ] * ncithesaurus:Metacarpal_Bone_Digit_5 ## Subsets @@ -54,7 +54,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of manual digit 5](../../UBERON/31/UBERON_0004331.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms @@ -64,8 +64,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fifth metacarpal bone (metacarpal bone of the little finger or pinky finger) is the most lateral metacarpal[Wikipedia:Fifth_metacarpal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003849.md b/md/UBERON/49/UBERON_0003849.md index 1cba3ba36f..af8d6e54b3 100644 --- a/md/UBERON/49/UBERON_0003849.md +++ b/md/UBERON/49/UBERON_0003849.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003849 * *Label* = mesencephalic neural crest - * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesencephalic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000935] - * neural crest midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000935] + * mesencephalic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000935 ] + * neural crest midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000935 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0003949.md b/md/UBERON/49/UBERON_0003949.md index 02f8dd03c4..c2f8687efc 100644 --- a/md/UBERON/49/UBERON_0003949.md +++ b/md/UBERON/49/UBERON_0003949.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003949 * *Label* = tubal tonsil - * *Definition* = the lymph tissue associated with the pharyngeal opening of the auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002386] + * *Definition* = the lymph tissue associated with the pharyngeal opening of the auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002386 ] ## Synonyms - * Gerlach's tonsil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54975] - * Gerlach's tubal tonsil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54975] - * auditory tube lymph gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54975] - * eustachian amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54975] + * Gerlach's tonsil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54975 ] + * Gerlach's tubal tonsil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54975 ] + * auditory tube lymph gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54975 ] + * eustachian amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54975 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004049.md b/md/UBERON/49/UBERON_0004049.md index 9b0e810ab6..16fc4ef226 100644 --- a/md/UBERON/49/UBERON_0004049.md +++ b/md/UBERON/49/UBERON_0004049.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004049 * *Label* = cerebellomedullary cistern - * *Definition* = the largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern [TA] located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern [TA] located between the cerebellum and the lateral aspect of the medulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/cerebellomedullary-cistern.html] + * *Definition* = the largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern [TA] located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern [TA] located between the cerebellum and the lateral aspect of the medulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/cerebellomedullary-cistern.html ] ## Synonyms - * great cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74517] + * great cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74517 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004149.md b/md/UBERON/49/UBERON_0004149.md index a878c3717b..fb9410a999 100644 --- a/md/UBERON/49/UBERON_0004149.md +++ b/md/UBERON/49/UBERON_0004149.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004149 * *Label* = ventriculo bulbo valve - * *Definition* = A heart valve located between the ventricle and bulbus arteriosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003173] + * *Definition* = A heart valve located between the ventricle and bulbus arteriosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003173 ] ## Synonyms - * bulboventricular valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001375] + * bulboventricular valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001375 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004249.md b/md/UBERON/49/UBERON_0004249.md index 413af23bb7..8c34f9781f 100644 --- a/md/UBERON/49/UBERON_0004249.md +++ b/md/UBERON/49/UBERON_0004249.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004249 * *Label* = manual digit bone - * *Definition* = A bone that is part of a forelimb digit. Typically phalanges but may include sesamoids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a forelimb digit. Typically phalanges but may include sesamoids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * finger bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000622] - * hand digit bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * finger bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000622 ] + * hand digit bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004449.md b/md/UBERON/49/UBERON_0004449.md index 4993ac32d7..ef66eb4112 100644 --- a/md/UBERON/49/UBERON_0004449.md +++ b/md/UBERON/49/UBERON_0004449.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004449 * *Label* = cerebral artery - * *Definition* = One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_artery] + * *Definition* = One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_artery ] ## Synonyms @@ -19,7 +19,7 @@ * MA:0002562 * MESH:A07.231.114.228 * SCTID:181308008 - * UMLS:C0007770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Artery] + * UMLS:C0007770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Artery ] * Wikipedia:Cerebral_artery * XAO:0000367 * ncithesaurus:Cerebral_Artery @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the internal carotid containing many branches supplying blood to the chorioid plexuses of the brain.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of internal carotid (AAO:0010219)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004549.md b/md/UBERON/49/UBERON_0004549.md index 57230deef8..b0ae458b25 100644 --- a/md/UBERON/49/UBERON_0004549.md +++ b/md/UBERON/49/UBERON_0004549.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004549 * *Label* = right eye - * *Definition* = An eye that is part of a right side of organism [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An eye that is part of a right side of organism [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12514] - * right orbital part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54449] - * right orbital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54449] + * right eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12514 ] + * right orbital part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54449 ] + * right orbital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54449 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [eye](../../UBERON/70/UBERON_0000970.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004649.md b/md/UBERON/49/UBERON_0004649.md index 0887c9b941..1f673285a0 100644 --- a/md/UBERON/49/UBERON_0004649.md +++ b/md/UBERON/49/UBERON_0004649.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004649 * *Label* = sphenoid bone pterygoid process - * *Definition* = The pterygoid processes of the sphenoid, one on either side, descend perpendicularly from the regions where the body and great wings unite. Each process consists of a medial pterygoid plate and a lateral pterygoid plate, the upper parts of which are fused anteriorly; a vertical sulcus, the pterygopalatine groove, descends on the front of the line of fusion. The plates are separated below by an angular cleft, the pterygoid fissure (or pterygoid notch), the margins of which are rough for articulation with the pyramidal process of the palatine bone. The two plates diverge behind and enclose between them a V-shaped fossa, the pterygoid fossa, which contains pterygoideus internus and tensor veli palatini. Above this fossa is a small, oval, shallow depression, the scaphoid fossa, which gives origin to the tensor veli palatini. The anterior surface of the pterygoid process is broad and triangular near its root, where it forms the posterior wall of the pterygopalatine fossa and presents the anterior orifice of the pterygoid canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid] + * *Definition* = The pterygoid processes of the sphenoid, one on either side, descend perpendicularly from the regions where the body and great wings unite. Each process consists of a medial pterygoid plate and a lateral pterygoid plate, the upper parts of which are fused anteriorly; a vertical sulcus, the pterygopalatine groove, descends on the front of the line of fusion. The plates are separated below by an angular cleft, the pterygoid fissure (or pterygoid notch), the margins of which are rough for articulation with the pyramidal process of the palatine bone. The two plates diverge behind and enclose between them a V-shaped fossa, the pterygoid fossa, which contains pterygoideus internus and tensor veli palatini. Above this fossa is a small, oval, shallow depression, the scaphoid fossa, which gives origin to the tensor veli palatini. The anterior surface of the pterygoid process is broad and triangular near its root, where it forms the posterior wall of the pterygopalatine fossa and presents the anterior orifice of the pterygoid canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid ] * *Comment* = todo - check AAO:0000521-pterygoid and MA:0001471-pterygoid bone. MA also has 'inner plate of pterygoid process' as a syn for MA:0001471, FMA has lateral/medial plates. Seems likely inner = lateral (see MP:0004452). ## Synonyms - * processus pterygoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54682] - * processus pterygoideus ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54682[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54682] - * pterygoid process of sphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54682] - * pterygoid process of sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54682] - * processus pterygoideus ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoid plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid] - * pterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid] - * pterygoid process of sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002774] - * pterygoid processes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid] - * pterygoid processus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_processes_of_the_sphenoid] + * processus pterygoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54682 ] + * processus pterygoideus ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54682, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54682 ] + * pterygoid process of sphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54682 ] + * pterygoid process of sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54682 ] + * processus pterygoideus ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoid plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid ] + * pterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid ] + * pterygoid process of sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002774 ] + * pterygoid processes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid ] + * pterygoid processus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_processes_of_the_sphenoid ] ## Cross-references @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Process that projects from posterior margin of commissure into subocular space.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of anterior quadratocranial commissure (AAO:0010061)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004749.md b/md/UBERON/49/UBERON_0004749.md index 676e0d94ef..4f22db8985 100644 --- a/md/UBERON/49/UBERON_0004749.md +++ b/md/UBERON/49/UBERON_0004749.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004749 * *Label* = blastodisc - * *Definition* = a small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_disc] + * *Definition* = a small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_disc ] ## Synonyms - * germinal disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_disc] - * embryonic disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000494] - * gastrodisk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000494] - * germ disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000494] + * germinal disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_disc ] + * embryonic disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000494 ] + * gastrodisk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000494 ] + * germ disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000494 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004849.md b/md/UBERON/49/UBERON_0004849.md index 861ca414b1..01e0c0e70f 100644 --- a/md/UBERON/49/UBERON_0004849.md +++ b/md/UBERON/49/UBERON_0004849.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004849 * *Label* = respiratory system venous endothelium - * *Definition* = An endothelium of vein that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium of vein that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius endothelium of vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius vein endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius venous endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of vein of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of vein of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system vein endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * venous endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * venous endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius endothelium of vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius vein endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius venous endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of vein of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of vein of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system vein endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * venous endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * venous endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium of vein](../../UBERON/19/UBERON_0001919.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0004949.md b/md/UBERON/49/UBERON_0004949.md index 58376dae48..caa8ea4add 100644 --- a/md/UBERON/49/UBERON_0004949.md +++ b/md/UBERON/49/UBERON_0004949.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004949 * *Label* = submucosa of main bronchus - * *Definition* = A submucosa that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus principalis submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchial submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13118] - * main bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchial submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13118 ] + * main bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005049.md b/md/UBERON/49/UBERON_0005049.md index 40989fb892..3ecf274cba 100644 --- a/md/UBERON/49/UBERON_0005049.md +++ b/md/UBERON/49/UBERON_0005049.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005049 * *Label* = mucosa of infundibulum of uterine tube - * *Definition* = A mucosa that is part of a uterine tube infundibulum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a uterine tube infundibulum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of infundibulum of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18357] - * mucosa of infundibulum of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18357] - * mucosa of organ of uterine tube infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of uterine tube infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of uterine tube infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of uterine tube infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube infundibulum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube infundibulum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube infundibulum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine tube infundibulum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of infundibulum of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18357 ] + * mucosa of infundibulum of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18357 ] + * mucosa of organ of uterine tube infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of uterine tube infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of uterine tube infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of uterine tube infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube infundibulum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube infundibulum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube infundibulum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine tube infundibulum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine tube infundibulum](../../UBERON/84/UBERON_0003984.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005149.md b/md/UBERON/49/UBERON_0005149.md index 05ea34653d..921c3cb540 100644 --- a/md/UBERON/49/UBERON_0005149.md +++ b/md/UBERON/49/UBERON_0005149.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005149 * *Label* = metanephric connecting tubule - * *Definition* = The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072286] + * *Definition* = The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072286 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [renal connecting tubule](../../UBERON/97/UBERON_0005097.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005249.md b/md/UBERON/49/UBERON_0005249.md index c85ee9e74a..58ae51d1dd 100644 --- a/md/UBERON/49/UBERON_0005249.md +++ b/md/UBERON/49/UBERON_0005249.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005249 * *Label* = metanephric renal pelvis - * *Definition* = A renal pelvis that is part of a metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A renal pelvis that is part of a metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * metanephros pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000945] + * metanephros pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000945 ] ## Cross-references @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [renal pelvis](../../UBERON/24/UBERON_0001224.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ureteric bud itself forms the collecting tubules and the ureter that drain the adult kidney. This type of kidney, called the metanephros, occurs in all adult amniotes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005349.md b/md/UBERON/49/UBERON_0005349.md index b1e9a8b7c4..b995f93876 100644 --- a/md/UBERON/49/UBERON_0005349.md +++ b/md/UBERON/49/UBERON_0005349.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005349 * *Label* = paramedian lobule - * *Definition* = the anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/paramedian+lobule] + * *Definition* = the anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/paramedian+lobule ] * *Comment* = Taxon notes: MP says not present in humans; however, we group based on synonymy from multiple sources ## Synonyms - * gracile lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72523] - * hemispheric lobule VIIBii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081210] - * lobulus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081210[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus paramedianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081210] - * lobulus paramedianus [hVIIb] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72523[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paramedian 1 (hVII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081210] - * paramedian lobule [HVIIB] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72523] - * paramedian lobule [hVIIIb] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72523] - * paramedian lobule of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRM] + * gracile lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72523 ] + * hemispheric lobule VIIBii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081210 ] + * lobulus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081210, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus paramedianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081210 ] + * lobulus paramedianus [hVIIb] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72523, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paramedian 1 (hVII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081210 ] + * paramedian lobule [HVIIB] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72523 ] + * paramedian lobule [hVIIIb] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72523 ] + * paramedian lobule of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRM ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005449.md b/md/UBERON/49/UBERON_0005449.md index 7f4f329a7d..45542de70c 100644 --- a/md/UBERON/49/UBERON_0005449.md +++ b/md/UBERON/49/UBERON_0005449.md @@ -6,9 +6,9 @@ ## Synonyms - * peritoneal cavity greater sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000448] - * general cavity of the abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_sac] - * peritoneum of the peritoneal cavity proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_sac] + * peritoneal cavity greater sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000448 ] + * general cavity of the abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_sac ] + * peritoneum of the peritoneal cavity proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_sac ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005649.md b/md/UBERON/49/UBERON_0005649.md index 8f867be602..7028197ff8 100644 --- a/md/UBERON/49/UBERON_0005649.md +++ b/md/UBERON/49/UBERON_0005649.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005649 * *Label* = pedal digit 2 epithelium - * *Definition* = An epithelium that is part of a pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 2 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 2 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 2 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005749.md b/md/UBERON/49/UBERON_0005749.md index ed7c777dc2..e1c7667428 100644 --- a/md/UBERON/49/UBERON_0005749.md +++ b/md/UBERON/49/UBERON_0005749.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005749 * *Label* = glomerular tuft - * *Definition* = the capillary loops of the kidney that normally function as a filtration unit[MP]. ...Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus[GudMap]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005325[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerulus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] + * *Definition* = the capillary loops of the kidney that normally function as a filtration unit[MP]. ...Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus[GudMap]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005325, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerulus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] ## Synonyms * glomerular capillary tuft - * glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0005849.md b/md/UBERON/49/UBERON_0005849.md index 4beb9413e9..260d818422 100644 --- a/md/UBERON/49/UBERON_0005849.md +++ b/md/UBERON/49/UBERON_0005849.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005849 * *Label* = cervical spinal cord lateral column - * *Definition* = A subdivision of spinal cord lateral column that is part of a cervical spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord lateral column that is part of a cervical spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * NIF_GrossAnatomy:birnlex_729 - * UMLS:C0228618 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_729] + * UMLS:C0228618 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_729 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical spinal cord](../../UBERON/26/UBERON_0002726.md) and [subdivision of spinal cord lateral column](../../UBERON/78/UBERON_0006078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006049.md b/md/UBERON/49/UBERON_0006049.md index e639fe5aab..4c29e25380 100644 --- a/md/UBERON/49/UBERON_0006049.md +++ b/md/UBERON/49/UBERON_0006049.md @@ -29,8 +29,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006349.md b/md/UBERON/49/UBERON_0006349.md index 1b4f2622ad..7519f50f8c 100644 --- a/md/UBERON/49/UBERON_0006349.md +++ b/md/UBERON/49/UBERON_0006349.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006349 * *Label* = epigastric artery - * *Definition* = An external iliac artery branch that supplies blood to the anterior abdominal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Epigastric_Artery] + * *Definition* = An external iliac artery branch that supplies blood to the anterior abdominal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Epigastric_Artery ] ## Synonyms @@ -14,7 +14,7 @@ * MA:0001948 * MESH:A07.231.114.330 * SCTID:261400009 - * UMLS:C0282640 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epigastric_Artery] + * UMLS:C0282640 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epigastric_Artery ] * Wikipedia:Epigastric_artery * ncithesaurus:Epigastric_Artery @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [anterior abdominal wall](../../UBERON/35/UBERON_0006635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006449.md b/md/UBERON/49/UBERON_0006449.md index 081d966df8..cbdb521096 100644 --- a/md/UBERON/49/UBERON_0006449.md +++ b/md/UBERON/49/UBERON_0006449.md @@ -6,16 +6,16 @@ ## Synonyms - * L3 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71189] - * L3 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1340] - * third lumbar spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1340] + * L3 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71189 ] + * L3 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1340 ] + * third lumbar spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1340 ] ## Cross-references * FMA:71189 * NIF_GrossAnatomy:birnlex_1340 * SCTID:278778005 - * UMLS:C0457874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1340] + * UMLS:C0457874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1340 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006649.md b/md/UBERON/49/UBERON_0006649.md index bc409c8e03..da15d240b3 100644 --- a/md/UBERON/49/UBERON_0006649.md +++ b/md/UBERON/49/UBERON_0006649.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006649 * *Label* = suspensory ligament of ovary - * *Definition* = A fold of peritoneum that extends out from the ovary to the wall of the pelvis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cooper%27s_ligaments_of_penis_of_ovary] + * *Definition* = A fold of peritoneum that extends out from the ovary to the wall of the pelvis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cooper%27s_ligaments_of_penis_of_ovary ] * *Comment* = Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3] ## Synonyms - * infundibulopelvic fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19822] - * infundibulopelvic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19822] + * infundibulopelvic fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19822 ] + * infundibulopelvic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19822 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006749.md b/md/UBERON/49/UBERON_0006749.md index 5f9a99dd7f..4026d5592b 100644 --- a/md/UBERON/49/UBERON_0006749.md +++ b/md/UBERON/49/UBERON_0006749.md @@ -15,7 +15,7 @@ * EHDAA:9135 * FMA:55558 * SCTID:245540001 - * UMLS:C0447651 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Parathyroid_Gland] + * UMLS:C0447651 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Parathyroid_Gland ] * ncithesaurus:Superior_Parathyroid_Gland ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006849.md b/md/UBERON/49/UBERON_0006849.md index 4b38d6020e..f3aa967401 100644 --- a/md/UBERON/49/UBERON_0006849.md +++ b/md/UBERON/49/UBERON_0006849.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006849 * *Label* = scapula - * *Definition* = Endochondral bone that is dorsoventrally compressed and provides attachment site for muscles of the pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000157] + * *Definition* = Endochondral bone that is dorsoventrally compressed and provides attachment site for muscles of the pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000157 ] * *Comment* = Taxon notes: present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals. Development notes: chick scapula is of dual origin and segmentally organized[ISBN:978-0-12-319060-4] ## Synonyms - * hypercoracocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000583] - * hypercoracocdeum@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000583] - * scapula@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000583] - * scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000583[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hypercoracocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000583 ] + * hypercoracocdeum@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000583 ] + * scapula@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000583 ] + * scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000583, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * shoulder blade - * scapula bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001218] - * scapulas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000583[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * scapula bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001218 ] + * scapulas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000583, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA * SCTID:302517007 * TAO:0000583 - * UMLS:C0036277 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Scapula] + * UMLS:C0036277 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Scapula ] * VHOG:0001398 * VSAO:0000157 * Wikipedia:Scapula @@ -58,7 +58,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [scapula endochondral element](../../UBERON/57/UBERON_0015057.md) ## Other Logical Axioms @@ -73,8 +73,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0001124 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010904 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0006949.md b/md/UBERON/49/UBERON_0006949.md index 1020c7ac3e..df65eceb25 100644 --- a/md/UBERON/49/UBERON_0006949.md +++ b/md/UBERON/49/UBERON_0006949.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006949 * *Label* = cervical loop - * *Definition* = The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_loop] + * *Definition* = The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_loop ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0007149.md b/md/UBERON/49/UBERON_0007149.md index 72a6f4d782..03ec79ac3b 100644 --- a/md/UBERON/49/UBERON_0007149.md +++ b/md/UBERON/49/UBERON_0007149.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007149 * *Label* = inferior thyroid artery - * *Definition* = The inferior thyroid artery passes upward, in front of the vertebral artery and Longus colli, then turns medialward behind the carotid sheath and its contents, and also behind the sympathetic trunk, the middle cervical ganglion resting upon the vessel. Reaching the lower border of the thyroid gland it divides into two branches, which supply the postero-inferior parts of the gland, and anastomose with the superior thyroid, and with the corresponding artery of the opposite side. The recurrent nerve passes upward generally behind, but occasionally in front of, the artery. This makes it vulnerable to injury during surgery that involves ligating the inferior thyroid artery, such as excision of the lower pole of the thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_thyroid_artery] + * *Definition* = The inferior thyroid artery passes upward, in front of the vertebral artery and Longus colli, then turns medialward behind the carotid sheath and its contents, and also behind the sympathetic trunk, the middle cervical ganglion resting upon the vessel. Reaching the lower border of the thyroid gland it divides into two branches, which supply the postero-inferior parts of the gland, and anastomose with the superior thyroid, and with the corresponding artery of the opposite side. The recurrent nerve passes upward generally behind, but occasionally in front of, the artery. This makes it vulnerable to injury during surgery that involves ligating the inferior thyroid artery, such as excision of the lower pole of the thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_thyroid_artery ] ## Synonyms - * arteria thyreoidea inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_thyroid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria thyreoidea inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_thyroid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:18623 * FMA:10662 * SCTID:303419004 - * UMLS:C0226264 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Thyroid_Artery] + * UMLS:C0226264 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Thyroid_Artery ] * Wikipedia:Inferior_thyroid_artery * http://upload.wikimedia.org/wikipedia/commons/2/28/Thyrocervical_trunk.png * ncithesaurus:Inferior_Thyroid_Artery @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0007249.md b/md/UBERON/49/UBERON_0007249.md index 63d1290615..43a32b4833 100644 --- a/md/UBERON/49/UBERON_0007249.md +++ b/md/UBERON/49/UBERON_0007249.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007249 * *Label* = dorsal accessory inferior olivary nucleus - * *Definition* = The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body#Olivary_nuclei] + * *Definition* = The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body#Olivary_nuclei ] ## Synonyms - * dorsal accessory olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72593] - * inferior olivary complex, dorsal accessory olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72593] - * inferior olive, dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72593] - * nucleus olivaris accessorius posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72593[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior accessory olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72593] - * inferior olive dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IOD] + * dorsal accessory olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72593 ] + * inferior olivary complex, dorsal accessory olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72593 ] + * inferior olive, dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72593 ] + * nucleus olivaris accessorius posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72593, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior accessory olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72593 ] + * inferior olive dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IOD ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0007349.md b/md/UBERON/49/UBERON_0007349.md index 7f4fccf53f..cd2d26761e 100644 --- a/md/UBERON/49/UBERON_0007349.md +++ b/md/UBERON/49/UBERON_0007349.md @@ -6,7 +6,7 @@ ## Synonyms - * middle pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003405] + * middle pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003405 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0008449.md b/md/UBERON/49/UBERON_0008449.md index 2a37d5b78e..adb0d3fb0e 100644 --- a/md/UBERON/49/UBERON_0008449.md +++ b/md/UBERON/49/UBERON_0008449.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008449 * *Label* = trochlear notch - * *Definition* = The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_notch] + * *Definition* = The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_notch ] ## Synonyms - * semilunar notch of ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23619] - * incisura semilunaris ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_notch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * incisura trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_notch] - * incisura trochlearis ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_notch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semilunar notch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochlear_notch] + * semilunar notch of ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23619 ] + * incisura semilunaris ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_notch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * incisura trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_notch ] + * incisura trochlearis ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_notch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semilunar notch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochlear_notch ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0008549.md b/md/UBERON/49/UBERON_0008549.md index 574bd02c5c..1622eb354a 100644 --- a/md/UBERON/49/UBERON_0008549.md +++ b/md/UBERON/49/UBERON_0008549.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008549 * *Label* = prevertebral muscle - * *Definition* = The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_muscles] + * *Definition* = The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_muscles ] ## Synonyms - * flexor muscle of vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32514] + * flexor muscle of vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32514 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0008949.md b/md/UBERON/49/UBERON_0008949.md index c36fa20fa5..dd29248e0a 100644 --- a/md/UBERON/49/UBERON_0008949.md +++ b/md/UBERON/49/UBERON_0008949.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008949 * *Label* = lower lobe of lung - * *Definition* = The bottom most subdivision of either the right or left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Lung_Lower_Lobe] + * *Definition* = The bottom most subdivision of either the right or left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Lung_Lower_Lobe ] * *Comment* = Editor notes: defining lobes spatially across species ## Synonyms - * inferior lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lobus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lobus inferior pulmonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * inferior lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lobus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lobus inferior pulmonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references * FMA:7335 * SCTID:303549000 - * UMLS:C0225758 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lung_Lower_Lobe] + * UMLS:C0225758 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lung_Lower_Lobe ] * galen:LowerLobeOfLung * ncithesaurus:Lung_Lower_Lobe @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009049.md b/md/UBERON/49/UBERON_0009049.md index bbdc40dc69..a80da9084c 100644 --- a/md/UBERON/49/UBERON_0009049.md +++ b/md/UBERON/49/UBERON_0009049.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009149.md b/md/UBERON/49/UBERON_0009149.md index fd507e6753..efea7c3e1d 100644 --- a/md/UBERON/49/UBERON_0009149.md +++ b/md/UBERON/49/UBERON_0009149.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009149 * *Label* = foramen primum - * *Definition* = opening in the septum primum between the two atria of the embryonic heart[TMD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_interatrial_foramen[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/foramen+primum] + * *Definition* = opening in the septum primum between the two atria of the embryonic heart[TMD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_interatrial_foramen, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/foramen+primum ] ## Synonyms - * interatrial foramen primum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_interatrial_foramen] - * ostium primum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/foramen+primum] - * primary interatrial foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_interatrial_foramen] + * interatrial foramen primum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_interatrial_foramen ] + * ostium primum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/foramen+primum ] + * primary interatrial foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_interatrial_foramen ] ## Cross-references * EHDAA2:0001826 * EMAPA:17012 * SCTID:308852002 - * UMLS:C1517292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_Primum] + * UMLS:C1517292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_Primum ] * VHOG:0001470 * Wikipedia:Primary_interatrial_foramen * ncithesaurus:Foramen_Primum @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = First of the two openings to perforate the septum primum between the two atria of the embryonic heart. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620]; [about heart development] In the various tetrapod classes ontogenetic events essentially recapitulate the phylogenetic stages.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009549.md b/md/UBERON/49/UBERON_0009549.md index 29edd07008..9309d5e03f 100644 --- a/md/UBERON/49/UBERON_0009549.md +++ b/md/UBERON/49/UBERON_0009549.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009549 * *Label* = hepatic sinusoid of right of lobe of liver - * *Definition* = A hepatic sinusoid that is part of a right lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic sinusoid that is part of a right lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right lobe hepatic sinusoids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000710] + * right lobe hepatic sinusoids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000710 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic sinusoid](../../UBERON/81/UBERON_0001281.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lobe of liver](../../UBERON/14/UBERON_0001114.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009749.md b/md/UBERON/49/UBERON_0009749.md index ed5d9403b9..e738c0b90f 100644 --- a/md/UBERON/49/UBERON_0009749.md +++ b/md/UBERON/49/UBERON_0009749.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009749 * *Label* = limb mesenchyme - * *Definition* = the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011261] + * *Definition* = the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011261 ] * *Comment* = AO notes: EMAPA mapping from TH ## Synonyms - * limb mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782] + * limb mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009849.md b/md/UBERON/49/UBERON_0009849.md index 30b44c7d45..6ec5d613cc 100644 --- a/md/UBERON/49/UBERON_0009849.md +++ b/md/UBERON/49/UBERON_0009849.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009849 * *Label* = tadpole stage - * *Definition* = wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISSN:0003-276X[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tadpole] + * *Definition* = wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISSN:0003-276X, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tadpole ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0009949.md b/md/UBERON/49/UBERON_0009949.md index 8f4df1283c..e4c84e810f 100644 --- a/md/UBERON/49/UBERON_0009949.md +++ b/md/UBERON/49/UBERON_0009949.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010049.md b/md/UBERON/49/UBERON_0010049.md index 5422b6587b..89eeeca0e3 100644 --- a/md/UBERON/49/UBERON_0010049.md +++ b/md/UBERON/49/UBERON_0010049.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010049 * *Label* = supralabial gland - * *Definition* = Glandular tissue present in lips of reptiles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Duvernoy's_gland] + * *Definition* = Glandular tissue present in lips of reptiles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Duvernoy's_gland ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010249.md b/md/UBERON/49/UBERON_0010249.md index 997f841659..62ec2a854a 100644 --- a/md/UBERON/49/UBERON_0010249.md +++ b/md/UBERON/49/UBERON_0010249.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010249 * *Label* = posterior meningeal artery - * *Definition* = The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_meningeal_artery] + * *Definition* = The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_meningeal_artery ] ## Synonyms - * terminal branch of ascending pharyngeal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49503] - * arteria meningea posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_meningeal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * meningeal branches of the ascending pharyngeal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_meningeal_artery] - * posterior meningeal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_meningeal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * terminal branch of ascending pharyngeal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49503 ] + * arteria meningea posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_meningeal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * meningeal branches of the ascending pharyngeal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_meningeal_artery ] + * posterior meningeal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_meningeal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:49503 - * UMLS:C0221310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Meningeal_Artery] + * UMLS:C0221310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Meningeal_Artery ] * Wikipedia:Posterior_meningeal_artery * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png * ncithesaurus:Posterior_Meningeal_Artery @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010349.md b/md/UBERON/49/UBERON_0010349.md index 7db13aa653..62327aa7b3 100644 --- a/md/UBERON/49/UBERON_0010349.md +++ b/md/UBERON/49/UBERON_0010349.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [otic capsule endochondral element](../../UBERON/20/UBERON_0015020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010549.md b/md/UBERON/49/UBERON_0010549.md index c85d334a0c..ae2aa0fe10 100644 --- a/md/UBERON/49/UBERON_0010549.md +++ b/md/UBERON/49/UBERON_0010549.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010549 * *Label* = pedal digit 3 metatarsal pre-cartilage condensation - * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe 3 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002050] - * foot digit 3 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 3 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe 3 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002050 ] + * foot digit 3 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3 mesenchyme](../../UBERON/97/UBERON_0005697.md) and [pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010749.md b/md/UBERON/49/UBERON_0010749.md index b70409d2e0..823ef27877 100644 --- a/md/UBERON/49/UBERON_0010749.md +++ b/md/UBERON/49/UBERON_0010749.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010749 * *Label* = middle pharyngeal constrictor - * *Definition* = The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] + * *Definition* = The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] ## Synonyms - * middle constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46622] - * middle constrictor of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46622] - * middle constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46622] - * musculus constrictor pharyngis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * constrictor medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] - * constrictor pharyngis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] - * constrictores pharyngis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] + * middle constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46622 ] + * middle constrictor of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46622 ] + * middle constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46622 ] + * musculus constrictor pharyngis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * constrictor medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] + * constrictor pharyngis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] + * constrictores pharyngis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] * hyopharyngeus - * middle constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] + * middle constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] * middle constrictor muscle - * middle pharyngeal constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle] - * musculus constrictor pharyngis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_pharyngeal_constrictor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle pharyngeal constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle ] + * musculus constrictor pharyngis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_pharyngeal_constrictor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46622 * SCTID:244802003 - * UMLS:C1513291 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Constrictor_Muscle] + * UMLS:C1513291 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Constrictor_Muscle ] * Wikipedia:Middle_pharyngeal_constrictor_muscle * http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png * ncithesaurus:Middle_Constrictor_Muscle @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010849.md b/md/UBERON/49/UBERON_0010849.md index 76ba63f69c..f4146a8a22 100644 --- a/md/UBERON/49/UBERON_0010849.md +++ b/md/UBERON/49/UBERON_0010849.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010849 * *Label* = tibia cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [tibia endochondral element](../../UBERON/04/UBERON_0015004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0010949.md b/md/UBERON/49/UBERON_0010949.md index d2b8407a35..fb1452127b 100644 --- a/md/UBERON/49/UBERON_0010949.md +++ b/md/UBERON/49/UBERON_0010949.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010949 * *Label* = sternooccipital muscle - * *Definition* = A muscle organ that has_muscle_insertion a occipital bone and has_muscle_origin a sternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that has_muscle_insertion a occipital bone and has_muscle_origin a sternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sternooccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002385] + * sternooccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002385 ] ## Cross-references * MA:0002385 - * UMLS:C1710196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternooccipital] + * UMLS:C1710196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternooccipital ] * ncithesaurus:Sternooccipital ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has muscle insertion](../../RO/73/RO_0002373.md) some [occipital bone](../../UBERON/76/UBERON_0001676.md) and [has muscle origin](../../RO/72/RO_0002372.md) some [sternum](../../UBERON/75/UBERON_0000975.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011049.md b/md/UBERON/49/UBERON_0011049.md index 66f5ff7967..770fe9da22 100644 --- a/md/UBERON/49/UBERON_0011049.md +++ b/md/UBERON/49/UBERON_0011049.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011049 * *Label* = uterovesical pouch - * *Definition* = The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch] + * *Definition* = The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch ] ## Synonyms - * excavatio vesico-uterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14729] - * excavatio vesicouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesico-uterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14729] - * vesicouterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14729] - * excavatio vesicouterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * excavatio vesiocuterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch] - * vesicouterine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch] - * vesicouterine excavation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch] - * vesicouterine pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesico-uterine_pouch] + * excavatio vesico-uterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14729 ] + * excavatio vesicouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesico-uterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14729 ] + * vesicouterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14729 ] + * excavatio vesicouterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * excavatio vesiocuterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch ] + * vesicouterine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch ] + * vesicouterine excavation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch ] + * vesicouterine pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesico-uterine_pouch ] ## Cross-references * FMA:14729 * SCTID:249806003 - * UMLS:C1519874 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Utero-Vesical_Pouch] + * UMLS:C1519874 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Utero-Vesical_Pouch ] * Wikipedia:Vesico-uterine_pouch * http://upload.wikimedia.org/wikipedia/commons/5/51/WeiblichesBeckenMedian.gif * ncithesaurus:Utero-Vesical_Pouch @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011149.md b/md/UBERON/49/UBERON_0011149.md index eacae09e17..4c78866458 100644 --- a/md/UBERON/49/UBERON_0011149.md +++ b/md/UBERON/49/UBERON_0011149.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011149 * *Label* = Marshall's gland - * *Definition* = A paired hollow organ in the genito-urinary apparatus of Raja (and probably other skates and rays) whose cavity is fluid filled. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm] + * *Definition* = A paired hollow organ in the genito-urinary apparatus of Raja (and probably other skates and rays) whose cavity is fluid filled. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm ] ## Synonyms - * alkaline gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001661] + * alkaline gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001661 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011249.md b/md/UBERON/49/UBERON_0011249.md index b8d9d6b0ef..ae48cccfd2 100644 --- a/md/UBERON/49/UBERON_0011249.md +++ b/md/UBERON/49/UBERON_0011249.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011249 * *Label* = appendicular skeletal system - * *Definition* = Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -31,8 +31,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal system which consists of the appendicular skeleton plus associated joints.[VSAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011349.md b/md/UBERON/49/UBERON_0011349.md index bc9f72f2eb..ca9b63216f 100644 --- a/md/UBERON/49/UBERON_0011349.md +++ b/md/UBERON/49/UBERON_0011349.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011349 * *Label* = pterygomandibular raphe - * *Definition* = The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygomandibular_raphe] + * *Definition* = The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygomandibular_raphe ] * *Comment* = AO notes: isa anatomical line in FMA ## Synonyms - * pterygomandibular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygomandibular_raphe] - * pterygomandibular raph%c3%a9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygomandibular_raphe] + * pterygomandibular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygomandibular_raphe ] + * pterygomandibular raph%c3%a9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygomandibular_raphe ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011649.md b/md/UBERON/49/UBERON_0011649.md index d8f7b77cc7..fd255c1687 100644 --- a/md/UBERON/49/UBERON_0011649.md +++ b/md/UBERON/49/UBERON_0011649.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011649 * *Label* = levator operculi - * *Definition* = Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000537] + * *Definition* = Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000537 ] * *Comment* = inserts onto operculum[Kardong] ## Synonyms - * levator operculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000537] + * levator operculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000537 ] * levator operculi muscle ## Cross-references @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0011949.md b/md/UBERON/49/UBERON_0011949.md index 5c1d9509da..85db773749 100644 --- a/md/UBERON/49/UBERON_0011949.md +++ b/md/UBERON/49/UBERON_0011949.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011949 * *Label* = endometrium luminal epithelium - * *Definition* = A luminal layer of epithelium that is part of a endometrium epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A luminal layer of epithelium that is part of a endometrium epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [luminal layer of epithelium](../../UBERON/45/UBERON_0011945.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endometrium epithelium](../../UBERON/11/UBERON_0004811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011949 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0012249.md b/md/UBERON/49/UBERON_0012249.md index cfe5d3b8ae..7719067619 100644 --- a/md/UBERON/49/UBERON_0012249.md +++ b/md/UBERON/49/UBERON_0012249.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012249 * *Label* = ectocervix - * *Definition* = The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001850[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_portion_of_cervix] + * *Definition* = The part of the cervix uteri that protrudes into the vagina and is lined with stratified squamous epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001850, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_portion_of_cervix ] * *Comment* = AO notes: distinction between two FMA classes not clear - we merge them here ## Synonyms - * ectocervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001850] - * ectocervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86484] - * portio vaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_portion_of_cervix] - * portio vaginalis cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001850[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine ectocervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-1098] - * vaginal part of cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77056] - * exocervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001850] + * ectocervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001850 ] + * ectocervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86484 ] + * portio vaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_portion_of_cervix ] + * portio vaginalis cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001850, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine ectocervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-1098 ] + * vaginal part of cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77056 ] + * exocervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001850 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:77056 * FMA:86484 * SCTID:264459002 - * UMLS:C0227829 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ectocervix] + * UMLS:C0227829 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ectocervix ] * Wikipedia:Vaginal_portion_of_cervix * ncithesaurus:Ectocervix @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distalmost_part_of](../../BSPO/08/BSPO_0001108.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) and [organ part](../../UBERON/64/UBERON_0000064.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010182 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0012349.md b/md/UBERON/49/UBERON_0012349.md index 1c91f73547..1968a7869e 100644 --- a/md/UBERON/49/UBERON_0012349.md +++ b/md/UBERON/49/UBERON_0012349.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012349 * *Label* = digital pad - * *Definition* = A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:611] + * *Definition* = A thick spongy structure at the base of the autopod, centred over the flexor surfaces of the distal interphalangeal joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:611 ] * *Comment* = May be fused ## Synonyms @@ -12,7 +12,7 @@ * acropodium pad * interdigital pad * digital cushion - * digital pads [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * digital pads [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod pad](../../UBERON/48/UBERON_0012348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [acropodium region](../../UBERON/54/UBERON_0012354.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012349 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0012449.md b/md/UBERON/49/UBERON_0012449.md index 57f89c96a0..3d5ca86d1d 100644 --- a/md/UBERON/49/UBERON_0012449.md +++ b/md/UBERON/49/UBERON_0012449.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012449 * *Label* = mechanoreceptor - * *Definition* = a sensory receptor that responds to mechanical pressure or distortion. Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mechanoreceptor] + * *Definition* = a sensory receptor that responds to mechanical pressure or distortion. Normally there are four main types in glabrous skin: Pacinian corpuscles, Meissner's corpuscles, Merkel's discs, and Ruffini endings. There are also mechanoreceptors in hairy skin, and the hair cells in the cochlea are the most sensitive mechanoreceptors, transducing air pressure waves into nerve signals sent to the brain. In the periodontal ligament, there are some mechanoreceptors, which allow the jaw to relax when biting down on hard objects; the mesencephalic nucleus is responsible for this reflex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mechanoreceptor ] ## Synonyms - * contact receptor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85595] + * contact receptor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85595 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012449 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0012649.md b/md/UBERON/49/UBERON_0012649.md index 26fb5824aa..0ca9ff094a 100644 --- a/md/UBERON/49/UBERON_0012649.md +++ b/md/UBERON/49/UBERON_0012649.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012649 * *Label* = anococcygeus muscle - * *Definition* = One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9071980] + * *Definition* = One of a pair of thin sheets of smooth muscle inserting on the rectum, having a tendinous origin largely on sacral vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9071980 ] ## Synonyms - * anococcygeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001533] - * AcM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9071980[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * anococcygeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001533 ] + * AcM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9071980, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0013149.md b/md/UBERON/49/UBERON_0013149.md index 184a62b3c2..4d7e3dd502 100644 --- a/md/UBERON/49/UBERON_0013149.md +++ b/md/UBERON/49/UBERON_0013149.md @@ -7,7 +7,7 @@ ## Synonyms - * rhombencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000101] + * rhombencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000101 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0013249.md b/md/UBERON/49/UBERON_0013249.md index 48d77c763e..dc5b494e73 100644 --- a/md/UBERON/49/UBERON_0013249.md +++ b/md/UBERON/49/UBERON_0013249.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013249 * *Label* = paroophoron - * *Definition* = A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paroophoron] + * *Definition* = A collection of a few scattered rudimentary tubules child, situated in the broad ligament between the epoophoron and the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paroophoron ] ## Synonyms - * Kobelt's tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18692] - * parooephoron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paroophoron] - * parophoron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paroophoron] + * Kobelt's tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18692 ] + * parooephoron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paroophoron ] + * parophoron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paroophoron ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013249 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0013649.md b/md/UBERON/49/UBERON_0013649.md index 4503b0bc8e..76bb898e0d 100644 --- a/md/UBERON/49/UBERON_0013649.md +++ b/md/UBERON/49/UBERON_0013649.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013649 * *Label* = fused tarsals 1 and 2 - * *Definition* = A tarsal bone that is formed from the fusion of the 1st and 2nd tarsal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:skansa] + * *Definition* = A tarsal bone that is formed from the fusion of the 1st and 2nd tarsal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:skansa ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [distal tarsal bone 1](../../UBERON/52/UBERON_0001452.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [distal tarsal bone 2](../../UBERON/53/UBERON_0001453.md) and [tarsal bone](../../UBERON/47/UBERON_0001447.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9788 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0013749.md b/md/UBERON/49/UBERON_0013749.md index 2ab41261c1..5db5a4f621 100644 --- a/md/UBERON/49/UBERON_0013749.md +++ b/md/UBERON/49/UBERON_0013749.md @@ -6,8 +6,8 @@ ## Synonyms - * diaphyseal end of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32830] - * humeral metaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32830] + * diaphyseal end of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32830 ] + * humeral metaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32830 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metaphysis](../../UBERON/38/UBERON_0001438.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metaphysis](../../UBERON/38/UBERON_0001438.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013749 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0014549.md b/md/UBERON/49/UBERON_0014549.md index 625b6f60f1..08043372c6 100644 --- a/md/UBERON/49/UBERON_0014549.md +++ b/md/UBERON/49/UBERON_0014549.md @@ -6,8 +6,8 @@ ## Synonyms - * CA2 part of stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4111[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA2 stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4111] + * CA2 part of stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4111, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA2 stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4111 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus pyramidal layer](../../UBERON/13/UBERON_0002313.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014549 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0014649.md b/md/UBERON/49/UBERON_0014649.md index 6daabc6d96..e2b204fb15 100644 --- a/md/UBERON/49/UBERON_0014649.md +++ b/md/UBERON/49/UBERON_0014649.md @@ -6,10 +6,10 @@ ## Synonyms - * substantia alba medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * white matter of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83944] - * white substance of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83944] - * MEDULLARY WHITE MATTER [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mw] + * substantia alba medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * white matter of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83944 ] + * white substance of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83944 ] + * MEDULLARY WHITE MATTER [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mw ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014649 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0014849.md b/md/UBERON/49/UBERON_0014849.md index 87a8d52c53..2ba45a3053 100644 --- a/md/UBERON/49/UBERON_0014849.md +++ b/md/UBERON/49/UBERON_0014849.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014849 * *Label* = hemotrichorial placental membrane - * *Definition* = A placental membrane that consists of three trophoblast cell layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012126[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A placental membrane that consists of three trophoblast cell layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012126, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * placenta hemotrichorial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012126] + * placenta hemotrichorial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012126 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9989 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014849 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_0015049.md b/md/UBERON/49/UBERON_0015049.md index fd017054e9..4a0175f00d 100644 --- a/md/UBERON/49/UBERON_0015049.md +++ b/md/UBERON/49/UBERON_0015049.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015049 * *Label* = carpus endochondral element - * *Definition* = A carpus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A carpus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * carpus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * carpus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * carpus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * carpus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) + * [carpal bone](../../UBERON/35/UBERON_0001435.md)or[carpus cartilage element](../../UBERON/13/UBERON_0006213.md)or[carpus pre-cartilage condensation](../../UBERON/14/UBERON_0006214.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015049 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2000349.md b/md/UBERON/49/UBERON_2000349.md index df826a302d..14806983d2 100644 --- a/md/UBERON/49/UBERON_2000349.md +++ b/md/UBERON/49/UBERON_2000349.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2000449.md b/md/UBERON/49/UBERON_2000449.md index 2209d06123..c6bf410036 100644 --- a/md/UBERON/49/UBERON_2000449.md +++ b/md/UBERON/49/UBERON_2000449.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2000549.md b/md/UBERON/49/UBERON_2000549.md index af681b96ef..693c7e2ee1 100644 --- a/md/UBERON/49/UBERON_2000549.md +++ b/md/UBERON/49/UBERON_2000549.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000549 * *Label* = posttemporal - * *Definition* = Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The posttemporal is commonly a Y-shaped bone with two elongate processes. The dorsal process may be equal or longer than the ventral process or the opposite. The ventral process may be absent in some teleosts. ## Synonyms - * post-temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000549] - * postemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000549] - * posttemporale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000549] - * suprascapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000549] + * post-temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000549 ] + * postemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000549 ] + * posttemporale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000549 ] + * suprascapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000549 ] ## Cross-references @@ -40,7 +40,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2000749.md b/md/UBERON/49/UBERON_2000749.md index 7c38cd6867..32c36834ed 100644 --- a/md/UBERON/49/UBERON_2000749.md +++ b/md/UBERON/49/UBERON_2000749.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000749 * *Label* = epaxial region somite 9 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2000849.md b/md/UBERON/49/UBERON_2000849.md index ace296204e..0e2e60df87 100644 --- a/md/UBERON/49/UBERON_2000849.md +++ b/md/UBERON/49/UBERON_2000849.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000849[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000849, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/49/UBERON_2001049.md b/md/UBERON/49/UBERON_2001049.md index d12b37ae67..78d5df88dc 100644 --- a/md/UBERON/49/UBERON_2001049.md +++ b/md/UBERON/49/UBERON_2001049.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001049[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001049, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/49/UBERON_2001349.md b/md/UBERON/49/UBERON_2001349.md index ba4de6aa25..25a9b515c6 100644 --- a/md/UBERON/49/UBERON_2001349.md +++ b/md/UBERON/49/UBERON_2001349.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2001649.md b/md/UBERON/49/UBERON_2001649.md index 8f92803e71..16585bd724 100644 --- a/md/UBERON/49/UBERON_2001649.md +++ b/md/UBERON/49/UBERON_2001649.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001649 * *Label* = basihyal tooth - * *Definition* = Tooth that is attached to the basihyal tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the basihyal tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [part_of](../../BFO/50/BFO_0000050.md) some [basihyal tooth plate](../../UBERON/48/UBERON_2001648.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2001749.md b/md/UBERON/49/UBERON_2001749.md index ef89c47a7c..02aa7402dc 100644 --- a/md/UBERON/49/UBERON_2001749.md +++ b/md/UBERON/49/UBERON_2001749.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001749 * *Label* = dentary-anguloarticular joint - * *Definition* = Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [articular/anguloarticular](../../UBERON/44/UBERON_0004744.md) and [core#connects](../../ts/core#connects.md) some [dentary](../../UBERON/42/UBERON_0004742.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2001849.md b/md/UBERON/49/UBERON_2001849.md index 12860bf795..d90fd0c523 100644 --- a/md/UBERON/49/UBERON_2001849.md +++ b/md/UBERON/49/UBERON_2001849.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001849 * *Label* = epihyal-branchiostegal ray joint - * *Definition* = Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2001949.md b/md/UBERON/49/UBERON_2001949.md index 2415980b7b..ae57bd91be 100644 --- a/md/UBERON/49/UBERON_2001949.md +++ b/md/UBERON/49/UBERON_2001949.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001949 * *Label* = caudal-fin hook - * *Definition* = Process that is part of the caudal fin lepidotrichium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is part of the caudal fin lepidotrichium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Caudal fin hook is found in some characiform fishes. ## Synonyms - * caudal fin hook [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001949] + * caudal fin hook [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001949 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2002049.md b/md/UBERON/49/UBERON_2002049.md index 36d8f44008..c237a1da67 100644 --- a/md/UBERON/49/UBERON_2002049.md +++ b/md/UBERON/49/UBERON_2002049.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002049 * *Label* = obsolete alarm substance cell - * *Definition* = Epithelial cell that produces a chemical that triggers antipredator behavior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Epithelial cell that produces a chemical that triggers antipredator behavior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = replace with CL_0007021 once cl is released. ## Synonyms @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/49/UBERON_2002149.md b/md/UBERON/49/UBERON_2002149.md index 18c00550c6..92837ff8e2 100644 --- a/md/UBERON/49/UBERON_2002149.md +++ b/md/UBERON/49/UBERON_2002149.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002149 * *Label* = vertebral element 9 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 9 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2002249.md b/md/UBERON/49/UBERON_2002249.md index a2f07dc076..1ce45a3cd5 100644 --- a/md/UBERON/49/UBERON_2002249.md +++ b/md/UBERON/49/UBERON_2002249.md @@ -6,7 +6,7 @@ ## Synonyms - * ctenii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ctenii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2005049.md b/md/UBERON/49/UBERON_2005049.md index c4e510cb8c..b2cb016877 100644 --- a/md/UBERON/49/UBERON_2005049.md +++ b/md/UBERON/49/UBERON_2005049.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005049 * *Label* = prosencephalic artery - * *Definition* = After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PrA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005049] + * PrA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005049 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_2005149.md b/md/UBERON/49/UBERON_2005149.md index f29e985eab..94413cf1a1 100644 --- a/md/UBERON/49/UBERON_2005149.md +++ b/md/UBERON/49/UBERON_2005149.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005149 * *Label* = distal epidermal cap of regenerating fin/limb - * *Definition* = Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2005149 + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3000449.md b/md/UBERON/49/UBERON_3000449.md index de9676c881..a94452cd99 100644 --- a/md/UBERON/49/UBERON_3000449.md +++ b/md/UBERON/49/UBERON_3000449.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3000649.md b/md/UBERON/49/UBERON_3000649.md index 5d1f455e26..8fda443d62 100644 --- a/md/UBERON/49/UBERON_3000649.md +++ b/md/UBERON/49/UBERON_3000649.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000649 * *Label* = anterior process of vomer - * *Definition* = Process that extends anterolaterally toward the maxilla-premaxilla articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends anterolaterally toward the maxilla-premaxilla articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3000949.md b/md/UBERON/49/UBERON_3000949.md index 90e8adb46a..508d10fb80 100644 --- a/md/UBERON/49/UBERON_3000949.md +++ b/md/UBERON/49/UBERON_3000949.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000949 * *Label* = posterior ramus of cleithrum - * *Definition* = Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3010049.md b/md/UBERON/49/UBERON_3010049.md index 7c1de7cc76..310c6411c5 100644 --- a/md/UBERON/49/UBERON_3010049.md +++ b/md/UBERON/49/UBERON_3010049.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010049 * *Label* = M. gemellus - * *Definition* = Originates from the dorso-lateral margin of the ischium and inserts on the medial surface of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the dorso-lateral margin of the ischium and inserts on the medial surface of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3010449.md b/md/UBERON/49/UBERON_3010449.md index 5383606496..609788485e 100644 --- a/md/UBERON/49/UBERON_3010449.md +++ b/md/UBERON/49/UBERON_3010449.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010449 * *Label* = dorsal marginal zone - * *Definition* = Marginal zone that is a key embryonic tissue region of the early gastrula stage embryo and that houses the Spemann-Mangold organizer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ASD:BJB] + * *Definition* = Marginal zone that is a key embryonic tissue region of the early gastrula stage embryo and that houses the Spemann-Mangold organizer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ASD:BJB ] ## Synonyms - * DMZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17368611] - * Spemann organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010449] - * organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010449] + * DMZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17368611 ] + * Spemann organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010449 ] + * organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010449 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_3010749.md b/md/UBERON/49/UBERON_3010749.md index 86008ab35f..2ee8d4333b 100644 --- a/md/UBERON/49/UBERON_3010749.md +++ b/md/UBERON/49/UBERON_3010749.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010749 * *Label* = M. iliolumbaris - * *Definition* = Originates on the anterior and lateral aspect of the ilial shaft and inserts on the transverse processes of presacral vertebrae IV-VII. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the anterior and lateral aspect of the ilial shaft and inserts on the transverse processes of presacral vertebrae IV-VII. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/49/UBERON_4200049.md b/md/UBERON/49/UBERON_4200049.md index bb512a6d2d..8dcae03cd3 100644 --- a/md/UBERON/49/UBERON_4200049.md +++ b/md/UBERON/49/UBERON_4200049.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0000050.md b/md/UBERON/50/UBERON_0000050.md index b59bb9cf6f..76d45c5c41 100644 --- a/md/UBERON/50/UBERON_0000050.md +++ b/md/UBERON/50/UBERON_0000050.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000050 * *Label* = simple eye with multiple lenses - * *Definition* = simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eye#Multiple_lenses] + * *Definition* = simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eye#Multiple_lenses ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0000450.md b/md/UBERON/50/UBERON_0000450.md index c4fcff04f0..c11475dbf5 100644 --- a/md/UBERON/50/UBERON_0000450.md +++ b/md/UBERON/50/UBERON_0000450.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000450 * *Label* = corpus albicans - * *Definition* = White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002784] + * *Definition* = White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002784 ] ## Synonyms - * corpus albicans of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18620] - * corpus fibrosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002784] - * corpus mamillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002784] - * mamillary body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002784[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * mammillary body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002784[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * corpus albicans of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18620 ] + * corpus fibrosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002784 ] + * corpus mamillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002784 ] + * mamillary body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002784, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * mammillary body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002784, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0000950.md b/md/UBERON/50/UBERON_0000950.md index 1b02728941..e9dc799b06 100644 --- a/md/UBERON/50/UBERON_0000950.md +++ b/md/UBERON/50/UBERON_0000950.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000950 * *Label* = gracilis - * *Definition* = The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracilis_muscle] + * *Definition* = The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracilis_muscle ] * *Comment* = Editor's note: AAO has minor and major gracilis, which merge together, attaching the pelvic rim to the tibiofibula - this could be grouped with the mammalian gracilis at some level; note the current insertion site is 'tibia' which would be modified for amphibian tibiafibula ## Synonyms - * gracilis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000536] - * musculus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracilis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gracilis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000536 ] + * musculus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracilis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002311 * OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA * SCTID:181689005 - * UMLS:C0224439 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gracilis] + * UMLS:C0224439 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gracilis ] * Wikipedia:Gracilis_muscle * galen:Gracilis * http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001050.md b/md/UBERON/50/UBERON_0001050.md index 6e949f7b45..a30f69661d 100644 --- a/md/UBERON/50/UBERON_0001050.md +++ b/md/UBERON/50/UBERON_0001050.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001050 * *Label* = obsolete atrium - * *Definition* = Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85574] + * *Definition* = Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85574 ] * *Comment* = obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium ## Synonyms @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:85574 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0002081 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001050 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_0001150.md b/md/UBERON/50/UBERON_0001150.md index 71332c49d1..c472803d62 100644 --- a/md/UBERON/50/UBERON_0001150.md +++ b/md/UBERON/50/UBERON_0001150.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001150 * *Label* = body of pancreas - * *Definition* = The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_pancreas] + * *Definition* = The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_pancreas ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * pancreas body * pancreatic body - * corpus pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_pancreas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_pancreas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pancreas corpus ## Cross-references @@ -22,7 +22,7 @@ * FMA:14518 * MA:0000121 * SCTID:362202004 - * UMLS:C0227582 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Body_of_the_Pancreas] + * UMLS:C0227582 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Body_of_the_Pancreas ] * VHOG:0000451 * Wikipedia:Body_of_pancreas * http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001250.md b/md/UBERON/50/UBERON_0001250.md index 1cae7aa587..5dca6d7a36 100644 --- a/md/UBERON/50/UBERON_0001250.md +++ b/md/UBERON/50/UBERON_0001250.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001250 * *Label* = red pulp of spleen - * *Definition* = Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Red_pulp] + * *Definition* = Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Red_pulp ] ## Synonyms - * pulpa rubra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15844[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pulpa rubra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15844, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * red pulp * spleen red pulp * splenic red pulp - * pulpa splenica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Red_pulp[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pulpa splenica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Red_pulp, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:15844 * MA:0000756 * SCTID:27579002 - * UMLS:C0229687 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Red_Pulp] + * UMLS:C0229687 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Red_Pulp ] * Wikipedia:Red_pulp * http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png @@ -43,8 +43,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001350.md b/md/UBERON/50/UBERON_0001350.md index aaae12c48d..5d9c3c5d69 100644 --- a/md/UBERON/50/UBERON_0001350.md +++ b/md/UBERON/50/UBERON_0001350.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001350 * *Label* = coccyx - * *Definition* = A collection of caudal vertebrae in the coccygeal region - may be fused[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A collection of caudal vertebrae in the coccygeal region - may be fused[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone. Taxon notes: In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted]. ## Synonyms - * coccygeal skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000259] - * coccygeal vertebrae I-IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20229] - * coccyx [coccygeal vertebrae i-iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20229] - * coccyx [vertebrae coccygeae i-iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20229[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os coccygis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20229[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os coccygis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coccyx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tailbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20229[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * coccygeal skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000259 ] + * coccygeal vertebrae I-IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20229 ] + * coccyx [coccygeal vertebrae i-iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20229 ] + * coccyx [vertebrae coccygeae i-iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20229, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os coccygis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20229, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os coccygis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coccyx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tailbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20229, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A02.835.232.834.229 * OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA * SCTID:182028002 - * UMLS:C0009194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coccyx] + * UMLS:C0009194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coccyx ] * Wikipedia:Coccyx * galen:Coccyx * http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small, bony element consisting of several fused, rudimentary caudal vertebrae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = coccygeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001450.md b/md/UBERON/50/UBERON_0001450.md index 58eb529286..ba41f26c75 100644 --- a/md/UBERON/50/UBERON_0001450.md +++ b/md/UBERON/50/UBERON_0001450.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001450 * *Label* = calcaneus - * *Definition* = The postaxial bone of the proximal tarsals series[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = The postaxial bone of the proximal tarsals series[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] * *Comment* = synonymous with the fibulare of basal tetrapods. ## Synonyms - * calcaneal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002355] - * calcaneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001348] - * os calcis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24496[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * calcanei [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000913[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcaneus] - * heel bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002355] - * os tarsi fibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002355] + * calcaneal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002355 ] + * calcaneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001348 ] + * os calcis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24496, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * calcanei [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000913, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcaneus ] + * heel bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002355 ] + * os tarsi fibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002355 ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001348 * MESH:A02.835.232.300.710.300 * SCTID:182099002 - * UMLS:C0006655 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Calcaneum] + * UMLS:C0006655 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Calcaneum ] * VSAO:0005016 * Wikipedia:Calcaneus * galen:Calcaneum @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcaneum endochondral element](../../UBERON/14/UBERON_0015014.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = calcaneal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001550.md b/md/UBERON/50/UBERON_0001550.md index 31050d0b82..bb9edc39af 100644 --- a/md/UBERON/50/UBERON_0001550.md +++ b/md/UBERON/50/UBERON_0001550.md @@ -9,7 +9,7 @@ * medial marginal vein of foot * vena marginalis medialis - * vena marginalis medialis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44420[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena marginalis medialis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44420, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001650.md b/md/UBERON/50/UBERON_0001650.md index 49d8fe1747..fbb0f7fee0 100644 --- a/md/UBERON/50/UBERON_0001650.md +++ b/md/UBERON/50/UBERON_0001650.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001650 * *Label* = hypoglossal nerve - * *Definition* = Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021566[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoglossal_nerve] + * *Definition* = Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021566, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoglossal_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Hypoglossal nerve [XII] - * cranial nerve XII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_820] - * hypoglossal XII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000798] + * cranial nerve XII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_820 ] + * hypoglossal XII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000798 ] * hypoglossal XII nerve * hypoglossal nerve tree - * nervus hypoglossus [xii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50871[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus hypoglossus [xii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50871, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * twelfth cranial nerve - * 12n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_820[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * CN-XII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000693] - * hypoglossal nerve/ root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:12n] - * nerve XII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:704] - * nervi hypoglossalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:704[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus hypoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoglossal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * 12n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_820, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * CN-XII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000693 ] + * hypoglossal nerve/ root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:12n ] + * nerve XII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:704 ] + * nervi hypoglossalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:704, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus hypoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoglossal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,11 +37,11 @@ * MA:0001094 * MESH:A08.800.800.120.330 * NIF_GrossAnatomy:birnlex_820 - * NeuroNames:704 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_820] + * NeuroNames:704 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_820 ] * OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA * SCTID:362471008 - * UMLS:C0020614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_820] - * UMLS:C0020614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypoglossal_Nerve] + * UMLS:C0020614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_820 ] + * UMLS:C0020614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypoglossal_Nerve ] * VHOG:0000693 * Wikipedia:Hypoglossal_nerve * XAO:0004215 @@ -68,8 +68,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nerve which innervates the muscles associated with the tongue including mm geniohyoideus, genioglossus, hyoglossus and rectus cervicis.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001750.md b/md/UBERON/50/UBERON_0001750.md index 5b47930074..f4bbe228f6 100644 --- a/md/UBERON/50/UBERON_0001750.md +++ b/md/UBERON/50/UBERON_0001750.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001750 * *Label* = lacrimal apparatus - * *Definition* = The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_apparatus] + * *Definition* = The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_apparatus ] * *Comment* = todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal. AO notes: this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye ## Synonyms - * apparatus lacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_apparatus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nasolacrimal drainage system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * apparatus lacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_apparatus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nasolacrimal drainage system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:901 * MA:0000274 * MESH:A09.371.463 - * UMLS:C0022903 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Apparatus] + * UMLS:C0022903 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Apparatus ] * Wikipedia:Lacrimal_apparatus * http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png * ncithesaurus:Lacrimal_Apparatus @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001850.md b/md/UBERON/50/UBERON_0001850.md index 8902b4b5c3..90d9aa7f27 100644 --- a/md/UBERON/50/UBERON_0001850.md +++ b/md/UBERON/50/UBERON_0001850.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001850 * *Label* = lacrimal duct - * *Definition* = Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61063[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_canaliculi] + * *Definition* = Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61063, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_canaliculi ] * *Comment* = todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal ## Synonyms - * lacrimal caniculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_duct] - * tear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001295] + * lacrimal caniculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_duct ] + * tear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001295 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0001950.md b/md/UBERON/50/UBERON_0001950.md index 31f480e70b..d94e67e4c7 100644 --- a/md/UBERON/50/UBERON_0001950.md +++ b/md/UBERON/50/UBERON_0001950.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001950 * *Label* = neocortex - * *Definition* = The term neocortex refers to those areas of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2547[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OldNeuroNames:754] + * *Definition* = The term neocortex refers to those areas of cerebral cortex defined on the basis of cytoarchitecture that have six layers. Starting from the cortical surface the layers are: molecular layer (I), external granular layer (II), external pyramidal layer (III), internal granular layer (IV), internal pyramidal layer (V), and multiform layer (VI). Neocortex is most prominent in the frontal lobe, the parietal lobe, the temporal lobe and the occipital lobe, less so in the cingulate gyrus, the parahippocampal gyrus and the insula. It is composed of two subdivisions: true isocortex and proisocortex (Carpenter-83)(NN) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2547, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OldNeuroNames:754 ] ## Synonyms * cerebral neocortex - * homogenetic cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * homotypical cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2547] - * isocortex (sensu lato) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62429] + * homogenetic cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * homotypical cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2547 ] + * isocortex (sensu lato) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62429 ] * neopallial cortex * neopallium - * isocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN] - * iso-cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:iso-cortex] - * nonolfactory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000920] - * nucleus hypoglossalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:757[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * isocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN ] + * iso-cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:iso-cortex ] + * nonolfactory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000920 ] + * nucleus hypoglossalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:757, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,8 @@ * MA:0002754 * MESH:A08.186.211.730.885.213.420 * NIF_GrossAnatomy:birnlex_2547 - * NeuroNames:757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2547] - * UMLS:C0175173 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2547] + * NeuroNames:757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2547 ] + * UMLS:C0175173 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2547 ] * Wikipedia:Neocortex * http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg @@ -56,8 +56,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The 6-layer neocortex is well conserved in all extant mammals, but not present in birds or reptils - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002050.md b/md/UBERON/50/UBERON_0002050.md index a5254047be..635eb51aaa 100644 --- a/md/UBERON/50/UBERON_0002050.md +++ b/md/UBERON/50/UBERON_0002050.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002050 * *Label* = embryonic structure - * *Definition* = Anatomical structure that is part of an embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000174[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anatomical structure that is part of an embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000174, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Note in FMA embryo is_a embryonic structure ## Synonyms - * developing embryonic structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004208] - * embryonic anatomical structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0003169] + * developing embryonic structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004208 ] + * embryonic anatomical structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0003169 ] * developing structure - * embryonale Struktur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000174] + * embryonale Struktur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000174 ] ## Cross-references @@ -28,7 +28,7 @@ * RETIRED_EHDAA2:0003169 * SCTID:667009 * TAO:0001105 - * UMLS:C0013948 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Embryonic_Structure] + * UMLS:C0013948 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Embryonic_Structure ] * VSAO:0000178 * XAO:0003042 * ZFA:0001105 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002150.md b/md/UBERON/50/UBERON_0002150.md index 9e2cd4c2f2..4f2b057cdf 100644 --- a/md/UBERON/50/UBERON_0002150.md +++ b/md/UBERON/50/UBERON_0002150.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002150 * *Label* = superior cerebellar peduncle - * *Definition* = The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_peduncle] + * *Definition* = The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_peduncle ] * *Comment* = Editor notes: we follow NIF in dividing this into 3 parts. This allows for consistency with ABA. AO notes: we make the TAO class disjoint for now as it's not clear if this is the analagous structure ## Synonyms - * brachium conjunctivum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1711] - * crus cerebello-cerebrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_peduncle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior cerebellar peduncle (Galen, Stilling) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736] - * superior cerebellar peduncle (brachium conjuctivum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:scp] - * superior cerebellar peduncle (brachium conjunctivum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:scp] - * superior peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_peduncle] - * tractus cerebello-rubralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus cerebello-tegmentalis mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brachium conjunctivum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1711 ] + * crus cerebello-cerebrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_peduncle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior cerebellar peduncle (Galen, Stilling) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736 ] + * superior cerebellar peduncle (brachium conjuctivum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:scp ] + * superior cerebellar peduncle (brachium conjunctivum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:scp ] + * superior peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_peduncle ] + * tractus cerebello-rubralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus cerebello-tegmentalis mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,9 +27,9 @@ * BM:BC * MA:0002746 * NIF_GrossAnatomy:birnlex_1711 - * NeuroNames:1736 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1711] + * NeuroNames:1736 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1711 ] * SCTID:279218008 - * UMLS:C0152391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1711] + * UMLS:C0152391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1711 ] * Wikipedia:Superior_cerebellar_peduncle * http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002250.md b/md/UBERON/50/UBERON_0002250.md index c680aec274..cfe1d60e50 100644 --- a/md/UBERON/50/UBERON_0002250.md +++ b/md/UBERON/50/UBERON_0002250.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002250 * *Label* = popliteal artery - * *Definition* = In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_artery] + * *Definition* = In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria poplitea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria poplitea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.114.681 * OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA * SCTID:181350008 - * UMLS:C0032649 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Popliteal_Artery] + * UMLS:C0032649 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Popliteal_Artery ] * Wikipedia:Popliteal_artery * http://upload.wikimedia.org/wikipedia/commons/a/a2/Popliteal_artery.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Popliteal_artery.png/200px-Popliteal_artery.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002350.md b/md/UBERON/50/UBERON_0002350.md index 8fa3823a97..0f4c1bdaf6 100644 --- a/md/UBERON/50/UBERON_0002350.md +++ b/md/UBERON/50/UBERON_0002350.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002350 * *Label* = conducting system of heart - * *Definition* = The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003161] + * *Definition* = The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003161 ] * *Comment* = Editor notes: EHDAA2 divides the system from the tissue ## Synonyms - * cardiac conducting system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001271] + * cardiac conducting system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001271 ] * cardiac conduction system - * cardiac impulse conducting system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003161] + * cardiac impulse conducting system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003161 ] * cardionector - * heart conduction system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003161] - * impulse conducting system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000094] + * heart conduction system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003161 ] + * impulse conducting system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000094 ] * central conduction system ## Cross-references @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The fish heart displays clear polarity of contraction in a posterior-to-anterior direction. The contraction waves originate in the sinus venosus and terminate in the conus arteriosus. The nodal phenotype persists in the inflow region of the heart, varying from the venosinus to the sinoatrial junctional areas in different species . Similar to the mammalian situation, pacemaker tissue with a lower intrinsic rhythmicity is also found at the atrioventricular junction.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002450.md b/md/UBERON/50/UBERON_0002450.md index 5b2117ea82..8ce423d705 100644 --- a/md/UBERON/50/UBERON_0002450.md +++ b/md/UBERON/50/UBERON_0002450.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002450 * *Label* = decidua - * *Definition* = Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Decidua] + * *Definition* = Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Decidua ] * *Comment* = todo - check mp syn ## Synonyms - * decidous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85538] + * decidous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85538 ] * decidua basalis * endometrium - * maternal decidual layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004256] + * maternal decidual layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004256 ] * placenta maternal decidual layer - * uterine decidua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001360] + * uterine decidua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001360 ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A05.360.319.679.490.373 * MIAA:0000290 * SCTID:362842004 - * UMLS:C0011106 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Decidua] + * UMLS:C0011106 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Decidua ] * Wikipedia:Decidua * http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray33.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray33.png/200px-Gray33.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002550.md b/md/UBERON/50/UBERON_0002550.md index 181378ddea..e4d840fafb 100644 --- a/md/UBERON/50/UBERON_0002550.md +++ b/md/UBERON/50/UBERON_0002550.md @@ -6,17 +6,17 @@ ## Synonyms - * chiasmal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62027] - * AHR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1005[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * preoptic division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:376] + * chiasmal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62027 ] + * AHR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1005, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * preoptic division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:376 ] ## Cross-references * BAMS:AHR * FMA:62027 * NIF_GrossAnatomy:birnlex_1005 - * NeuroNames:376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1005] - * UMLS:C0020653 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1005] + * NeuroNames:376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1005 ] + * UMLS:C0020653 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1005 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002650.md b/md/UBERON/50/UBERON_0002650.md index a807060fbb..015f3a35f2 100644 --- a/md/UBERON/50/UBERON_0002650.md +++ b/md/UBERON/50/UBERON_0002650.md @@ -6,29 +6,29 @@ ## Synonyms - * dorsomedial thalamic nucleus, paralaminar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160] - * mediodorsal thalamic nucleus, paralaminar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1276] - * nucleus medialis dorsalis caudalis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1276] - * nucleus medialis dorsalis thalami, pars multiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1276] - * nucleus medialis dorsalis, pars multiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1276] - * nucleus medialis dorsalis, pars paralaminaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1276] - * paralaminar part of dorsomedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160] - * paralaminar part of medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160] - * pars paralaminaris nuclei mediodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars paralaminaris of medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160] - * ventral mediodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62160] - * MDPL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1276[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * mediodorsal thalamic nucleus paralaminar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MDPL] - * paralaminar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:313] - * paralaminar part of the medial dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:313] + * dorsomedial thalamic nucleus, paralaminar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160 ] + * mediodorsal thalamic nucleus, paralaminar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1276 ] + * nucleus medialis dorsalis caudalis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1276 ] + * nucleus medialis dorsalis thalami, pars multiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1276 ] + * nucleus medialis dorsalis, pars multiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1276 ] + * nucleus medialis dorsalis, pars paralaminaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1276 ] + * paralaminar part of dorsomedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160 ] + * paralaminar part of medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160 ] + * pars paralaminaris nuclei mediodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars paralaminaris of medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160 ] + * ventral mediodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62160 ] + * MDPL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1276, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * mediodorsal thalamic nucleus paralaminar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MDPL ] + * paralaminar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:313 ] + * paralaminar part of the medial dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:313 ] ## Cross-references * BAMS:MDPL * FMA:62160 * NIF_GrossAnatomy:birnlex_1276 - * NeuroNames:313 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1276] - * UMLS:C0228332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1276] + * NeuroNames:313 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1276 ] + * UMLS:C0228332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1276 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002750.md b/md/UBERON/50/UBERON_0002750.md index 931973c007..57950917fd 100644 --- a/md/UBERON/50/UBERON_0002750.md +++ b/md/UBERON/50/UBERON_0002750.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002750 * *Label* = medial longitudinal fasciculus of medulla - * *Definition* = A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial longitudinal fasciculus that is part of a medulla [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medial longitudinal fasciculus of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus longitudinalis medialis (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:784[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial longitudinal fasciculus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:784] + * medial longitudinal fasciculus of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus longitudinalis medialis (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:784, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial longitudinal fasciculus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:784 ] ## Cross-references * BAMS:mlfm * FMA:72618 * NIF_GrossAnatomy:birnlex_1574 - * NeuroNames:784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1574] - * UMLS:C0228536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1574] + * NeuroNames:784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1574 ] + * UMLS:C0228536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1574 ] ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial longitudinal fasciculus](../../UBERON/09/UBERON_0002309.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002850.md b/md/UBERON/50/UBERON_0002850.md index b3a7af8238..b4579ebc99 100644 --- a/md/UBERON/50/UBERON_0002850.md +++ b/md/UBERON/50/UBERON_0002850.md @@ -6,15 +6,15 @@ ## Synonyms - * seventh thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6327] - * seventh thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6327] + * seventh thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6327 ] + * seventh thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6327 ] ## Cross-references * EMAPA:25180 * FMA:6327 * NIF_GrossAnatomy:birnlex_2617 - * UMLS:C0501705 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2617] + * UMLS:C0501705 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2617 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0002950.md b/md/UBERON/50/UBERON_0002950.md index 6d75c671d7..458dd4e7e2 100644 --- a/md/UBERON/50/UBERON_0002950.md +++ b/md/UBERON/50/UBERON_0002950.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002950 * *Label* = regional part of midbrain - * *Definition* = A regional part of brain that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61997] - * segment of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_763] + * midbrain segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61997 ] + * segment of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_763 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003050.md b/md/UBERON/50/UBERON_0003050.md index 15ab5f2e63..c4a9ec8768 100644 --- a/md/UBERON/50/UBERON_0003050.md +++ b/md/UBERON/50/UBERON_0003050.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003050 * *Label* = olfactory placode - * *Definition* = A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_placode[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000005] + * *Definition* = A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_placode, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000005 ] * *Comment* = Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest // Note that NBK53171 classifies this as non-neurogenic ## Synonyms - * olfactory placodes [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * placoda nasalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * placoda olfactoria [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * olfactory placodes [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * placoda nasalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * placoda olfactoria [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nasal I placode * nasal placode @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (2) neurogenic placodes (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003150.md b/md/UBERON/50/UBERON_0003150.md index c0de46c922..595cb953cb 100644 --- a/md/UBERON/50/UBERON_0003150.md +++ b/md/UBERON/50/UBERON_0003150.md @@ -7,7 +7,7 @@ ## Synonyms - * abdominal sternite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004477] + * abdominal sternite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004477 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004477 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003150 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_0003250.md b/md/UBERON/50/UBERON_0003250.md index a42b686ded..50a47e12a1 100644 --- a/md/UBERON/50/UBERON_0003250.md +++ b/md/UBERON/50/UBERON_0003250.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003250 * *Label* = rectus capitis lateralis - * *Definition* = The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_lateralis_muscle] + * *Definition* = The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_lateralis_muscle ] ## Synonyms - * lateral rectus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46316] - * musculus rectus capitis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_lateralis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rectus capitis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_lateralis_muscle] - * rectus capitus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_lateralis_muscle] - * rectus capitus lateralis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_lateralis_muscle] + * lateral rectus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46316 ] + * musculus rectus capitis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_lateralis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rectus capitis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_lateralis_muscle ] + * rectus capitus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_lateralis_muscle ] + * rectus capitus lateralis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_lateralis_muscle ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003350.md b/md/UBERON/50/UBERON_0003350.md index 4939b22168..dcfa2cf8dc 100644 --- a/md/UBERON/50/UBERON_0003350.md +++ b/md/UBERON/50/UBERON_0003350.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003350 * *Label* = epithelium of mucosa - * *Definition* = A layer of epithelial cells on the surface of the mucosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003752] + * *Definition* = A layer of epithelial cells on the surface of the mucosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003752 ] * *Comment* = lies on top of lamina propria ## Synonyms - * lamina epithelialis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003752] - * lamina epithelialis mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003752] + * lamina epithelialis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003752 ] + * lamina epithelialis mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003752 ] ## Cross-references @@ -56,15 +56,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003450.md b/md/UBERON/50/UBERON_0003450.md index 0af62de4e5..ec9d4baabe 100644 --- a/md/UBERON/50/UBERON_0003450.md +++ b/md/UBERON/50/UBERON_0003450.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003450 * *Label* = upper jaw incisor - * *Definition* = An incisor tooth that is part of a upper jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An incisor tooth that is part of a upper jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * incisor of palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor of upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth of palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth of upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palatoquadrate arch incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * palatoquadrate arch incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper jaw incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper primary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84214] - * maxillary secondary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55712] - * premaxillary tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper permanent incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55712] - * upper secondary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55712] + * incisor of palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor of upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth of palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth of upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palatoquadrate arch incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * palatoquadrate arch incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper jaw incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper primary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84214 ] + * maxillary secondary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55712 ] + * premaxillary tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper permanent incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55712 ] + * upper secondary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55712 ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:55712 * MA:0001601 * SCTID:421578001 - * UMLS:C1710579 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Jaw_Incisor] + * UMLS:C1710579 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Jaw_Incisor ] * ncithesaurus:Upper_Jaw_Incisor ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [incisor tooth](../../UBERON/98/UBERON_0001098.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003550.md b/md/UBERON/50/UBERON_0003550.md index bb2e7de2ff..b43baa808f 100644 --- a/md/UBERON/50/UBERON_0003550.md +++ b/md/UBERON/50/UBERON_0003550.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003550 * *Label* = forebrain pia mater - * *Definition* = A pia mater that is part of a forebrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a forebrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forebrain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * forebrain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003650.md b/md/UBERON/50/UBERON_0003650.md index 0f876b3e66..6a3bad934f 100644 --- a/md/UBERON/50/UBERON_0003650.md +++ b/md/UBERON/50/UBERON_0003650.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003650 * *Label* = metatarsal bone of digit 1 - * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24502] - * foot digit 1 metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hallux metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * first metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24502 ] + * foot digit 1 metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hallux metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * metatarsal 1 - * metatarsal I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000925] - * metatarsal bone digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001369] - * metatarsal bone of foot digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * metatarsal bone of hallux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metatarsal I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000925 ] + * metatarsal bone digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001369 ] + * metatarsal bone of foot digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * metatarsal bone of hallux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * toe 1 metatarsal * toe 1 metatarsus @@ -25,7 +25,7 @@ * FMA:24502 * MA:0001369 * SCTID:182121005 - * UMLS:C1708999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone_Digit_1] + * UMLS:C1708999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone_Digit_1 ] * ncithesaurus:Metatarsal_Bone_Digit_1 ## Subsets @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of pedal digit 1](../../UBERON/32/UBERON_0004332.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first metatarsal bone is the bone in the body of the foot just behind the big toe. It is remarkable for its great thickness, and is the shortest of the metatarsal bones. The body is strong, and of well-marked prismoid form. The base presents, as a rule, no articular facets on its sides, but occasionally on the lateral side there is an oval facet, by which it articulates with the second metatarsal. Its proximal articular surface is of large size and kidney-shaped; its circumference is grooved, for the tarsometatarsal ligaments, and medially gives insertion to part of the tendon of the Tibialis anterior; its plantar angle presents a rough oval prominence for the insertion of the tendon of the Peronus longus. The head is large; on its plantar surface are two grooved facets, on which glide sesamoid bones; the facets are separated by a smooth elevation[Wikipedia:First_metatarsal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003850.md b/md/UBERON/50/UBERON_0003850.md index bf298fea57..139cea974d 100644 --- a/md/UBERON/50/UBERON_0003850.md +++ b/md/UBERON/50/UBERON_0003850.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003850 * *Label* = telencephalon neural crest - * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neural crest telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000812] + * neural crest telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000812 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cranial neural crest that is part of the telencephalon.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0003950.md b/md/UBERON/50/UBERON_0003950.md index 96e30d093c..55b7577e99 100644 --- a/md/UBERON/50/UBERON_0003950.md +++ b/md/UBERON/50/UBERON_0003950.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003950 * *Label* = inner ear canal - * *Definition* = the tubular ducts of the inner ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002729] + * *Definition* = the tubular ducts of the inner ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002729 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004050.md b/md/UBERON/50/UBERON_0004050.md index 09a7c20210..d0a2ea832d 100644 --- a/md/UBERON/50/UBERON_0004050.md +++ b/md/UBERON/50/UBERON_0004050.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004050 * *Label* = subarachnoid cistern - * *Definition* = the widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009032[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cistern_(neuroanatomy)] + * *Definition* = the widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009032, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cistern_(neuroanatomy) ] * *Comment* = AO notes: in FMA is a subdivision of arachnoid space ## Synonyms - * cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cistern_(neuroanatomy)] - * cisterna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cistern_(neuroanatomy)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cistern_(neuroanatomy) ] + * cisterna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cistern_(neuroanatomy), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Ci * FMA:83717 * SCTID:314223007 - * UMLS:C0228144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subarachnoid_Cistern] + * UMLS:C0228144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subarachnoid_Cistern ] * Wikipedia:Cistern_(neuroanatomy) * ncithesaurus:Subarachnoid_Cistern @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004150.md b/md/UBERON/50/UBERON_0004150.md index 6dfa892227..cdd3e4cf17 100644 --- a/md/UBERON/50/UBERON_0004150.md +++ b/md/UBERON/50/UBERON_0004150.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004150 * *Label* = coronary sinus valve - * *Definition* = Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003178] + * *Definition* = Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003178 ] * *Comment* = todo - development ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004250.md b/md/UBERON/50/UBERON_0004250.md index 4f36fddbe0..3e4fcb3160 100644 --- a/md/UBERON/50/UBERON_0004250.md +++ b/md/UBERON/50/UBERON_0004250.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004250 * *Label* = upper arm bone - * *Definition* = A bone that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] + * *Definition* = A bone that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ] * *Comment* = May be merged into humerus. See: https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ## Synonyms - * humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376] + * humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3586533&group_id=76834&atid=1205376 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004450.md b/md/UBERON/50/UBERON_0004450.md index 86425224f8..47609fdfe8 100644 --- a/md/UBERON/50/UBERON_0004450.md +++ b/md/UBERON/50/UBERON_0004450.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004450 * *Label* = gastric vein - * *Definition* = Either of two veins (left gastric and right gastric) that drain blood away from the stomach and lesser curvature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Gastric_Vein] + * *Definition* = Either of two veins (left gastric and right gastric) that drain blood away from the stomach and lesser curvature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Gastric_Vein ] ## Synonyms - * vena gastrica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena gastrica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0011046 * MA:0002128 * SCTID:281060006 - * UMLS:C0750610 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Vein] + * UMLS:C0750610 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Vein ] * Wikipedia:Gastric_vein * XAO:0000389 * ncithesaurus:Gastric_Vein @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [lesser curvature of stomach](../../UBERON/63/UBERON_0001163.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004550.md b/md/UBERON/50/UBERON_0004550.md index 336dd0e040..8cc36dbd14 100644 --- a/md/UBERON/50/UBERON_0004550.md +++ b/md/UBERON/50/UBERON_0004550.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004550 * *Label* = gastroesophageal sphincter - * *Definition* = A sphincter muscle that is part of a cardia of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sphincter muscle that is part of a cardia of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - split? check FMA:63048 ## Synonyms - * gastroesophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14915] + * gastroesophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14915 ] * gastroesophageal sphincter muscle - * inferior esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14915] - * LES [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * cardiac sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002951] - * cardiac sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * esophageal sphincter%2c lower [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * esophageal-cardiac junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * esophagogastric junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * gastro-esophageal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * gastro-esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * gastro-oesophageal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * gastroesophageal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * gastroesophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * lower esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002951] - * lower esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] + * inferior esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14915 ] + * LES [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * cardiac sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002951 ] + * cardiac sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * esophageal sphincter%2c lower [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * esophageal-cardiac junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * esophagogastric junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * gastro-esophageal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * gastro-esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * gastro-oesophageal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * gastroesophageal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * gastroesophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * lower esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002951 ] + * lower esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] ## Cross-references @@ -33,7 +33,7 @@ * FMA:14915 * MA:0002951 * SCTID:267809009 - * UMLS:C0227192 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Esophageal_Sphincter] + * UMLS:C0227192 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Esophageal_Sphincter ] * galen:LowerEsophagealSphincter * ncithesaurus:Lower_Esophageal_Sphincter @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cardia of stomach](../../UBERON/62/UBERON_0001162.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004650.md b/md/UBERON/50/UBERON_0004650.md index 07be86ca92..8f65a4c458 100644 --- a/md/UBERON/50/UBERON_0004650.md +++ b/md/UBERON/50/UBERON_0004650.md @@ -6,7 +6,7 @@ ## Synonyms - * keratinized epithelium of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74865] + * keratinized epithelium of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74865 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [keratinized stratified squamous epithelium](../../UBERON/29/UBERON_0012329.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004750.md b/md/UBERON/50/UBERON_0004750.md index 6bcc3eddfa..a9816647c9 100644 --- a/md/UBERON/50/UBERON_0004750.md +++ b/md/UBERON/50/UBERON_0004750.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004750 * *Label* = blastoderm - * *Definition* = A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastoderm] + * *Definition* = A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastoderm ] ## Synonyms - * germinal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000126] - * membrana germinativa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000126] + * germinal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000126 ] + * membrana germinativa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000126 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004850.md b/md/UBERON/50/UBERON_0004850.md index 5a87d55f11..eb48749a57 100644 --- a/md/UBERON/50/UBERON_0004850.md +++ b/md/UBERON/50/UBERON_0004850.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004850 * *Label* = lymph node endothelium - * *Definition* = An endothelium that is part of a lymph node [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a lymph node [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endothelium of lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endothelium of lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0004950.md b/md/UBERON/50/UBERON_0004950.md index d8b77ea20b..648e000e52 100644 --- a/md/UBERON/50/UBERON_0004950.md +++ b/md/UBERON/50/UBERON_0004950.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004950 * *Label* = submucosa of lobar bronchus - * *Definition* = A submucosa that is part of a lobar bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a lobar bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lobar bronchial submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62669] - * lobar bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lobar bronchial submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62669 ] + * lobar bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005050.md b/md/UBERON/50/UBERON_0005050.md index 64d487b30b..3fa500f1f4 100644 --- a/md/UBERON/50/UBERON_0005050.md +++ b/md/UBERON/50/UBERON_0005050.md @@ -6,8 +6,8 @@ ## Synonyms - * papillary process of caudate lobe of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14506] - * processus papillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14506] + * papillary process of caudate lobe of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14506 ] + * processus papillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14506 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005250.md b/md/UBERON/50/UBERON_0005250.md index bdd5f4236b..e3f5f51552 100644 --- a/md/UBERON/50/UBERON_0005250.md +++ b/md/UBERON/50/UBERON_0005250.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005250 * *Label* = stomatodeum gland - * *Definition* = A gland that is part of a stomodeum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a stomodeum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * stomatodaeum gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000658] + * stomatodaeum gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000658 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomodeum](../../UBERON/30/UBERON_0000930.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005350.md b/md/UBERON/50/UBERON_0005350.md index 01fbf0087e..19dd730fc3 100644 --- a/md/UBERON/50/UBERON_0005350.md +++ b/md/UBERON/50/UBERON_0005350.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005350 * *Label* = lobule simplex - * *Definition* = .[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010005] + * *Definition* = .[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010005 ] * *Comment* = Taxon notes: MP says not present in humans; however, we group based on synonymy from multiple sources ## Synonyms - * hemispheric lobule VI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081206] - * lobule h vi of larsell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522] - * lobulus quadrangularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081206] - * lobulus simplex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081206] - * lobulus simplex cerebelli [h vi et vi] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior crescentic lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522] - * semilunar lobule-1 (posterior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522] - * simple lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010005] - * simple lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522] - * simple lobule of cerebellum [h vi and vi] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72522] - * simplex (hvi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081206] - * simplex lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081206] - * Simple lobule of the cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SIM] + * hemispheric lobule VI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081206 ] + * lobule h vi of larsell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522 ] + * lobulus quadrangularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081206 ] + * lobulus simplex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081206 ] + * lobulus simplex cerebelli [h vi et vi] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior crescentic lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522 ] + * semilunar lobule-1 (posterior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522 ] + * simple lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010005 ] + * simple lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522 ] + * simple lobule of cerebellum [h vi and vi] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72522 ] + * simplex (hvi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081206 ] + * simplex lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081206 ] + * Simple lobule of the cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SIM ] ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005450.md b/md/UBERON/50/UBERON_0005450.md index 30a8179d4b..99d67795fe 100644 --- a/md/UBERON/50/UBERON_0005450.md +++ b/md/UBERON/50/UBERON_0005450.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005450 * *Label* = greater sac cavity - * *Definition* = the cavity in the abdomen that is inside the peritoneum but outside of the lesser sac. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_sac] + * *Definition* = the cavity in the abdomen that is inside the peritoneum but outside of the lesser sac. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_sac ] ## Synonyms - * cavity of greater sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9691] - * cavum peritonei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9691] - * greater peritoneal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9691] - * greater sac lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000724] + * cavity of greater sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9691 ] + * cavum peritonei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9691 ] + * greater peritoneal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9691 ] + * greater sac lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000724 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [greater sac](../../UBERON/49/UBERON_0005449.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005650.md b/md/UBERON/50/UBERON_0005650.md index d9f99b40b4..33487d57dc 100644 --- a/md/UBERON/50/UBERON_0005650.md +++ b/md/UBERON/50/UBERON_0005650.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005650 * *Label* = pedal digit 3 epithelium - * *Definition* = An epithelium that is part of a pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 3 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 3 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 3 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005750.md b/md/UBERON/50/UBERON_0005750.md index 88a4d19cc8..4f3a0579ac 100644 --- a/md/UBERON/50/UBERON_0005750.md +++ b/md/UBERON/50/UBERON_0005750.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005750 * *Label* = glomerular parietal epithelium - * *Definition* = A single layer of simple squamous epithelium in the glomerular capsule. Does not function in filtration[UBERON]. outer layer of the glomerular capsule composed of a single layer of simple squamous epithelium[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A single layer of simple squamous epithelium in the glomerular capsule. Does not function in filtration[UBERON]. outer layer of the glomerular capsule composed of a single layer of simple squamous epithelium[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = TODO - check this. BTO has podocytes under here ## Synonyms - * Bowman's parietal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498] - * capsular epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002296] - * glomerular capsule parietal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74272] - * outer layer of glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74272] - * parietal capsular epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498] - * parietal epithelial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005253] - * parietal epithelium of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498] + * Bowman's parietal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498 ] + * capsular epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002296 ] + * glomerular capsule parietal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74272 ] + * outer layer of glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74272 ] + * parietal capsular epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498 ] + * parietal epithelial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005253 ] + * parietal epithelium of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498 ] * parietal layer of Bowman capsule - * parietal layer of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498] - * parietal layer of glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74272] - * parietal layer of glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011498] - * renal glomerular capsule epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005253] + * parietal layer of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498 ] + * parietal layer of glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74272 ] + * parietal layer of glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011498 ] + * renal glomerular capsule epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005253 ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0002605 * SCTID:362218005 * TAO:0005253 - * UMLS:C0227645 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parietal_Layer_of_Bowman_s_Capsule] + * UMLS:C0227645 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parietal_Layer_of_Bowman_s_Capsule ] * ZFA:0005253 * ncithesaurus:Parietal_Layer_of_Bowman_s_Capsule @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Simple squamous epithelium that lines the capsule of the renal glomerulus.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0005850.md b/md/UBERON/50/UBERON_0005850.md index 9c8688eaf8..2190c3bed2 100644 --- a/md/UBERON/50/UBERON_0005850.md +++ b/md/UBERON/50/UBERON_0005850.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005850 * *Label* = lumbar spinal cord lateral column - * *Definition* = A subdivision of spinal cord lateral column that is part of a lumbar spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of spinal cord lateral column that is part of a lumbar spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar spinal cord](../../UBERON/92/UBERON_0002792.md) and [subdivision of spinal cord lateral column](../../UBERON/78/UBERON_0006078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0006050.md b/md/UBERON/50/UBERON_0006050.md index 95e4ee21c8..e2a5e4dfd9 100644 --- a/md/UBERON/50/UBERON_0006050.md +++ b/md/UBERON/50/UBERON_0006050.md @@ -29,8 +29,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0006250.md b/md/UBERON/50/UBERON_0006250.md index 6aa98c35bb..98cd6c1e9c 100644 --- a/md/UBERON/50/UBERON_0006250.md +++ b/md/UBERON/50/UBERON_0006250.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006250 * *Label* = infundibular recess of 3rd ventricle - * *Definition* = The floor of the third ventricle is prolonged downward as a funnel-shaped recess, the infundibular recess, into the infundibulum, and to the apex of the latter the hypophysis or pititary is attached [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infundibular_recess] + * *Definition* = The floor of the third ventricle is prolonged downward as a funnel-shaped recess, the infundibular recess, into the infundibulum, and to the apex of the latter the hypophysis or pititary is attached [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infundibular_recess ] * *Comment* = Editor note: in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac ## Synonyms - * infundibular recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78456] - * infundibular recess of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78456] - * recessus infundibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recessus infundibuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Third ventricle infundibular recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V3ir] - * infundibular reccess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IRe] - * recessus infundibuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infundibular_recess[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * infundibular recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78456 ] + * infundibular recess of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78456 ] + * recessus infundibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recessus infundibuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Third ventricle infundibular recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V3ir ] + * infundibular reccess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IRe ] + * recessus infundibuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infundibular_recess, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0006450.md b/md/UBERON/50/UBERON_0006450.md index ad8ae14404..fc85fdb161 100644 --- a/md/UBERON/50/UBERON_0006450.md +++ b/md/UBERON/50/UBERON_0006450.md @@ -6,16 +6,16 @@ ## Synonyms - * L2 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1345] - * l2 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71188] - * second lumbar spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1345] + * L2 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1345 ] + * l2 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71188 ] + * second lumbar spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1345 ] ## Cross-references * FMA:71188 * NIF_GrossAnatomy:birnlex_1345 * SCTID:278777000 - * UMLS:C0457873 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1345] + * UMLS:C0457873 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1345 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0006650.md b/md/UBERON/50/UBERON_0006650.md index 0503b24cb7..a549f993be 100644 --- a/md/UBERON/50/UBERON_0006650.md +++ b/md/UBERON/50/UBERON_0006650.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006650 * *Label* = tunica vaginalis testis - * *Definition* = The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vaginalis] + * *Definition* = The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vaginalis ] * *Comment* = We follow FMA is classifying as membranous layer - but this does not account for relationship to mesolthelium (subclass or has part?). The FMA also has 'sac of tunica vaginalis', which is a serous sac. // tunica vaginalis testis has two layers: visceral and parietal; the visceral layer lies on the anterolateral surface of the testis and epididymis; the parietal layer lines the inner surface of the scrotal sac ## Synonyms - * tunica vaginalis of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19844] - * lamina parietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vaginalis] - * lamina visceralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vaginalis] + * tunica vaginalis of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19844 ] + * lamina parietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vaginalis ] + * lamina visceralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vaginalis ] * tunica vaginalis - * tunica vaginalis testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vaginalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica vaginalis testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tunica_vaginalis] + * tunica vaginalis testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vaginalis ] + * tunica vaginalis testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tunica_vaginalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0006850.md b/md/UBERON/50/UBERON_0006850.md index 9b17c7f046..300897a6a5 100644 --- a/md/UBERON/50/UBERON_0006850.md +++ b/md/UBERON/50/UBERON_0006850.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006850 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_0006950.md b/md/UBERON/50/UBERON_0006950.md index 963697de10..d6f8f2080f 100644 --- a/md/UBERON/50/UBERON_0006950.md +++ b/md/UBERON/50/UBERON_0006950.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006950 * *Label* = stellate reticulum - * *Definition* = The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stellate_reticulum] + * *Definition* = The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stellate_reticulum ] ## Synonyms - * reticulum stellatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stellate_reticulum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * reticulum stellatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stellate_reticulum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0003910 - * UMLS:C1514963 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stellate_Reticulum] + * UMLS:C1514963 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stellate_Reticulum ] * Wikipedia:Stellate_reticulum * http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png * ncithesaurus:Stellate_Reticulum @@ -36,8 +36,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007441 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0007150.md b/md/UBERON/50/UBERON_0007150.md index 9ce953e5ce..905cda3c5e 100644 --- a/md/UBERON/50/UBERON_0007150.md +++ b/md/UBERON/50/UBERON_0007150.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007150 * *Label* = superior thyroid artery - * *Definition* = The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_thyroid_artery] + * *Definition* = The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_thyroid_artery ] ## Synonyms - * arteria thyreoidea superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_thyroid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria thyreoidea superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_thyroid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:18624 * FMA:49472 * SCTID:244218002 - * UMLS:C0226093 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Thyroid_Artery] + * UMLS:C0226093 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Thyroid_Artery ] * Wikipedia:Superior_thyroid_artery * http://upload.wikimedia.org/wikipedia/commons/5/5a/Plate_16_Zuckerkandl.jpg * ncithesaurus:Superior_Thyroid_Artery @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0007250.md b/md/UBERON/50/UBERON_0007250.md index 5ca9fef013..d45993d7a5 100644 --- a/md/UBERON/50/UBERON_0007250.md +++ b/md/UBERON/50/UBERON_0007250.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007250 * *Label* = lingual tonsil - * *Definition* = The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_tonsils] + * *Definition* = The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_tonsils ] ## Synonyms - * lingual tonsillar tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000773] - * tonsilla lingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_tonsils[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lingual tonsillar tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000773 ] + * tonsilla lingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_tonsils, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:54836 * MA:0000773 * SCTID:276957006 - * UMLS:C0229871 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lingual_Tonsil] + * UMLS:C0229871 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lingual_Tonsil ] * Wikipedia:Lingual_tonsils * http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg * ncithesaurus:Lingual_Tonsil @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0007350.md b/md/UBERON/50/UBERON_0007350.md index 6b535e833e..d7817dbbe2 100644 --- a/md/UBERON/50/UBERON_0007350.md +++ b/md/UBERON/50/UBERON_0007350.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007350 * *Label* = arcopallium - * *Definition* = The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex, and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala. The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcopallium] + * *Definition* = The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex, and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala. The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcopallium ] ## Synonyms * amygdaloid complex - * arched pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003408] - * archistriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BM:ARCO[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.avianbrain.org/archistriatum.html] + * arched pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003408 ] + * archistriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BM:ARCO, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.avianbrain.org/archistriatum.html ] * epistriatum ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0007650.md b/md/UBERON/50/UBERON_0007650.md index b8f2ce1604..b20f0fc0f4 100644 --- a/md/UBERON/50/UBERON_0007650.md +++ b/md/UBERON/50/UBERON_0007650.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007650 * *Label* = esophagogastric junction - * *Definition* = the junction between the esophagus and the stomach epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/esophagogastric+junction] + * *Definition* = the junction between the esophagus and the stomach epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/esophagogastric+junction ] ## Synonyms - * cardioesophageal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9434] - * gastroesophageal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9434] + * cardioesophageal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9434 ] + * gastroesophageal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9434 ] * GEJ - * esophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.365.414] - * esophagogastric junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.365.414] + * esophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.365.414 ] + * esophagogastric junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.365.414 ] * squamocolumnar junction between esophagus and stomach ## Cross-references @@ -21,7 +21,7 @@ * GAID:292 * MESH:A03.365.414 * SCTID:362130006 - * UMLS:C0014871 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastroesophageal_Junction] + * UMLS:C0014871 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastroesophageal_Junction ] * ncithesaurus:Gastroesophageal_Junction ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0007750.md b/md/UBERON/50/UBERON_0007750.md index 811e968c5b..1fca95eb60 100644 --- a/md/UBERON/50/UBERON_0007750.md +++ b/md/UBERON/50/UBERON_0007750.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007750 * *Label* = metatarsophalangeal joint of pedal digit 1 - * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note the name of the structure in EMAPA is incorrect ## Synonyms * first metatarsophalangeal joint - * metatarsophalangeal joint of first digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35228] - * metatarsophalangeal joint of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35228] - * metatarsophalangeal joint of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35228[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsophalangeal joint of first digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35228 ] + * metatarsophalangeal joint of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35228 ] + * metatarsophalangeal joint of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35228, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pedal digit 1](../../UBERON/15/UBERON_0004315.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0008250.md b/md/UBERON/50/UBERON_0008250.md index 8ed887bcf8..6c40433df9 100644 --- a/md/UBERON/50/UBERON_0008250.md +++ b/md/UBERON/50/UBERON_0008250.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008250 * *Label* = cardiac stomach - * *Definition* = In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002122] + * *Definition* = In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002122 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0008450.md b/md/UBERON/50/UBERON_0008450.md index 2ed87d3947..bf9fd057c1 100644 --- a/md/UBERON/50/UBERON_0008450.md +++ b/md/UBERON/50/UBERON_0008450.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008450 * *Label* = psoas muscle - * *Definition* = A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek "psoa", the plural meaning "muscles of the loin". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.633.567.825[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Psoas] + * *Definition* = A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek "psoa", the plural meaning "muscles of the loin". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.633.567.825, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Psoas ] ## Synonyms - * psoas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001140] - * psoas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002553] + * psoas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001140 ] + * psoas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002553 ] ## Cross-references @@ -16,7 +16,7 @@ * MA:0002553 * MESH:A02.633.567.825 * SCTID:276167002 - * UMLS:C0085221 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Psoas_Muscle] + * UMLS:C0085221 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Psoas_Muscle ] * Wikipedia:Psoas * galen:Psoas * ncithesaurus:Psoas_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0008950.md b/md/UBERON/50/UBERON_0008950.md index 788b858911..9ec721544c 100644 --- a/md/UBERON/50/UBERON_0008950.md +++ b/md/UBERON/50/UBERON_0008950.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008950 * *Label* = azygous lobe of lung - * *Definition* = The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.e-radiography.net/radpath/a/azygoslobe.htm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gpnotebook.co.uk] + * *Definition* = The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.e-radiography.net/radpath/a/azygoslobe.htm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gpnotebook.co.uk ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0009050.md b/md/UBERON/50/UBERON_0009050.md index 986c7c1b24..af96ee0447 100644 --- a/md/UBERON/50/UBERON_0009050.md +++ b/md/UBERON/50/UBERON_0009050.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009050 * *Label* = nucleus of solitary tract - * *Definition* = A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Solitary_nucleus] + * *Definition* = A neural nucleus that is part of the solitary tract nuclear complex. The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Solitary_nucleus ] ## Synonyms - * nucleus of the tractus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1429] - * nucleus of tractus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Solitary_nucleus] - * nucleus tractus solitarii medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Solitary_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus of the tractus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1429 ] + * nucleus of tractus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Solitary_nucleus ] + * nucleus tractus solitarii medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Solitary_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * solitary nucleus * solitary tract nucleus - * Geschmackskern@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003963] - * nuclei tractus solitarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:742[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the solitary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1429] - * nucleus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:742[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tracti solitarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:742[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tractus solitarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003963[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * solitary nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:742] - * solitary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003963] + * Geschmackskern@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003963 ] + * nuclei tractus solitarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:742, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the solitary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1429 ] + * nucleus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:742, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tracti solitarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:742, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tractus solitarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003963, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * solitary nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:742 ] + * solitary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003963 ] ## Cross-references @@ -34,9 +34,9 @@ * MA:0001052 * MESH:A08.186.211.132.810.406.750 * NIF_GrossAnatomy:birnlex_1429 - * NeuroNames:742 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1429] - * UMLS:C0175518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1429] - * UMLS:C0175518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Solitary_Nucleus] + * NeuroNames:742 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1429 ] + * UMLS:C0175518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1429 ] + * UMLS:C0175518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Solitary_Nucleus ] * Wikipedia:Solitary_nucleus * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png @@ -54,15 +54,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0009550.md b/md/UBERON/50/UBERON_0009550.md index 8008fe6f48..217247fbdf 100644 --- a/md/UBERON/50/UBERON_0009550.md +++ b/md/UBERON/50/UBERON_0009550.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009550 * *Label* = endoderm of foregut-midgut junction - * *Definition* = An endoderm that is part of a foregut-midgut junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a foregut-midgut junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut-midgut junction](../../UBERON/35/UBERON_0006235.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0009650.md b/md/UBERON/50/UBERON_0009650.md index 00a49e22c8..82c5275ea0 100644 --- a/md/UBERON/50/UBERON_0009650.md +++ b/md/UBERON/50/UBERON_0009650.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009650 * *Label* = cortical arch of kidney - * *Definition* = The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=5968] + * *Definition* = The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=5968 ] ## Synonyms - * cortical arches of kidney [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cortical arches of kidney [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * MA:0001650 - * UMLS:C1511525 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cortical_Arch] + * UMLS:C1511525 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cortical_Arch ] * ncithesaurus:Cortical_Arch ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0009850.md b/md/UBERON/50/UBERON_0009850.md index 010caaef25..2d91c7d9eb 100644 --- a/md/UBERON/50/UBERON_0009850.md +++ b/md/UBERON/50/UBERON_0009850.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009850 * *Label* = nematode larva - * *Definition* = A multi-cellular organism that existence_starts_and_ends_during a nematode larval stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-cellular organism that existence_starts_and_ends_during a nematode larval stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [nematode larval stage](../../UBERON/29/UBERON_0004729.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0009950.md b/md/UBERON/50/UBERON_0009950.md index 68fa273f5b..f9bacb946e 100644 --- a/md/UBERON/50/UBERON_0009950.md +++ b/md/UBERON/50/UBERON_0009950.md @@ -7,7 +7,7 @@ ## Synonyms - * plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090405] + * plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090405 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010050.md b/md/UBERON/50/UBERON_0010050.md index c975fe7f89..69668ea75c 100644 --- a/md/UBERON/50/UBERON_0010050.md +++ b/md/UBERON/50/UBERON_0010050.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010050 * *Label* = infralabial gland - * *Definition* = Glandular tissue present in lips of reptiles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Duvernoy's_gland] + * *Definition* = Glandular tissue present in lips of reptiles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Duvernoy's_gland ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010150.md b/md/UBERON/50/UBERON_0010150.md index c18a51ac57..245c38dd7e 100644 --- a/md/UBERON/50/UBERON_0010150.md +++ b/md/UBERON/50/UBERON_0010150.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010150 * *Label* = duct of major vestibular gland - * *Definition* = One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bartholin's_duct] + * *Definition* = One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bartholin's_duct ] ## Synonyms - * duct of greater vestibular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20088] - * greater vestibular gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20088] - * Bartholin's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bartholin's_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * duct of greater vestibular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20088 ] + * greater vestibular gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20088 ] + * Bartholin's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bartholin's_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [major vestibular gland](../../UBERON/60/UBERON_0000460.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0010151 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010250.md b/md/UBERON/50/UBERON_0010250.md index 5bdc119cd7..3e79861a99 100644 --- a/md/UBERON/50/UBERON_0010250.md +++ b/md/UBERON/50/UBERON_0010250.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010250 * *Label* = middle meningeal artery - * *Definition* = The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_meningeal_artery] + * *Definition* = The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_meningeal_artery ] ## Synonyms - * arteria meningea media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_meningeal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria meningea media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_meningeal_artery] + * arteria meningea media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_meningeal_artery ] + * arteria meningea media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_meningeal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010550.md b/md/UBERON/50/UBERON_0010550.md index fe871b7257..edeb82f058 100644 --- a/md/UBERON/50/UBERON_0010550.md +++ b/md/UBERON/50/UBERON_0010550.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010550 * *Label* = pedal digit 4 metatarsal pre-cartilage condensation - * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe 4 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002055] - * foot digit 4 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 4 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe 4 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002055 ] + * foot digit 4 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4 mesenchyme](../../UBERON/98/UBERON_0005698.md) and [pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010750.md b/md/UBERON/50/UBERON_0010750.md index a4c8a6dbc0..54443475a3 100644 --- a/md/UBERON/50/UBERON_0010750.md +++ b/md/UBERON/50/UBERON_0010750.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010750 * *Label* = prefrontal bone - * *Definition* = a bone separating the lacrimal and frontal bones in many tetrapod skulls [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prefrontal_bone] + * *Definition* = a bone separating the lacrimal and frontal bones in many tetrapod skulls [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prefrontal_bone ] * *Comment* = Taxon notes: It first evolved in the sarcopterygian clade Rhipidistia, which includes lungfish and the Tetrapodomorpha. The prefrontal is found in most modern and extinct lungfish, amphibians and reptiles. It is very small, fused to the frontals or lost in many groups of coelurosaurian theropod dinosaurs and is completely absent in their modern descendants, the birds. The prefrontal was also lost in early mammaliaforms and so is not present in modern mammals either[WP] ## Synonyms - * prefrontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000460] + * prefrontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000460 ] ## Cross-references @@ -25,7 +25,7 @@ * [dermal bone](../../UBERON/07/UBERON_0008907.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Sarcopterygii](../../NCBITaxon/87/NCBITaxon_8287.md) * [adjacent to](../../RO/20/RO_0002220.md) some [tetrapod frontal bone](../../UBERON/09/UBERON_0000209.md) * [adjacent to](../../RO/20/RO_0002220.md) some [lacrimal bone](../../UBERON/80/UBERON_0001680.md) @@ -39,8 +39,9 @@ ## Other Annotations * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9606 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010850.md b/md/UBERON/50/UBERON_0010850.md index ffb1473aca..20c17e1754 100644 --- a/md/UBERON/50/UBERON_0010850.md +++ b/md/UBERON/50/UBERON_0010850.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010850 * *Label* = tibia pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0010950.md b/md/UBERON/50/UBERON_0010950.md index 34bdf21e26..b04913f122 100644 --- a/md/UBERON/50/UBERON_0010950.md +++ b/md/UBERON/50/UBERON_0010950.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010950 * *Label* = styloauricular muscle - * *Definition* = An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis] + * *Definition* = An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011050.md b/md/UBERON/50/UBERON_0011050.md index d72ff0f2a5..9c64b23826 100644 --- a/md/UBERON/50/UBERON_0011050.md +++ b/md/UBERON/50/UBERON_0011050.md @@ -6,9 +6,9 @@ ## Synonyms - * T8 vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9991] - * eighth dorsal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9991] - * eighth thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9991] + * T8 vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9991 ] + * eighth dorsal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9991 ] + * eighth thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9991 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:9991 * MA:0001445 * SCTID:181836007 - * UMLS:C0459953 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:T8_Vertebra] + * UMLS:C0459953 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:T8_Vertebra ] * ncithesaurus:T8_Vertebra ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011150.md b/md/UBERON/50/UBERON_0011150.md index 5485118963..dece93d3c8 100644 --- a/md/UBERON/50/UBERON_0011150.md +++ b/md/UBERON/50/UBERON_0011150.md @@ -6,8 +6,8 @@ ## Synonyms - * branchia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000518] - * gills [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001214[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * branchia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000518 ] + * gills [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001214, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -19,7 +19,7 @@ * MIAA:0000134 * OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA * TAO:0000354 - * UMLS:C0017558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gill] + * UMLS:C0017558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gill ] * VHOG:0001214 * XAO:0000120 * ZFA:0000354 @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The respiratory organ of most aquatic animals that breathe water to obtain oxygen, consisting of a filamentous structure of vascular membranes across which dissolved gases are exchanged. [Free_Online_Dictionary] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Gill slits in the pharyngeal region of the intestine, which are also present in (at least) tunicates and acranians, are taken over to the craniote ancestor.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011250.md b/md/UBERON/50/UBERON_0011250.md index 10700ade7f..b3b54d0bde 100644 --- a/md/UBERON/50/UBERON_0011250.md +++ b/md/UBERON/50/UBERON_0011250.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011250 * *Label* = autopod bone - * *Definition* = A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod endochondral element](../../UBERON/63/UBERON_0015063.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011350.md b/md/UBERON/50/UBERON_0011350.md index 7cd921cce5..e330762817 100644 --- a/md/UBERON/50/UBERON_0011350.md +++ b/md/UBERON/50/UBERON_0011350.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011650.md b/md/UBERON/50/UBERON_0011650.md index 918fe3ae58..3ba1b71c8e 100644 --- a/md/UBERON/50/UBERON_0011650.md +++ b/md/UBERON/50/UBERON_0011650.md @@ -32,8 +32,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011850.md b/md/UBERON/50/UBERON_0011850.md index acf147d03c..bceb1baaaa 100644 --- a/md/UBERON/50/UBERON_0011850.md +++ b/md/UBERON/50/UBERON_0011850.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011850 * *Label* = acinus of salivary gland - * *Definition* = An acinus that is part of a salivary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a salivary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * salivary gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59870] + * salivary gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59870 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [salivary gland](../../UBERON/44/UBERON_0001044.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0011950.md b/md/UBERON/50/UBERON_0011950.md index a83237bde3..db695c04b8 100644 --- a/md/UBERON/50/UBERON_0011950.md +++ b/md/UBERON/50/UBERON_0011950.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011950 * *Label* = mammary gland luminal epithelium - * *Definition* = A luminal layer of epithelium that is part of a mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A luminal layer of epithelium that is part of a mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumina layer of epithelium of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74458] + * lumina layer of epithelium of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74458 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [luminal layer of epithelium](../../UBERON/45/UBERON_0011945.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0012150.md b/md/UBERON/50/UBERON_0012150.md index 0f0a536250..eb5ab7cb01 100644 --- a/md/UBERON/50/UBERON_0012150.md +++ b/md/UBERON/50/UBERON_0012150.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012150 * *Label* = skeleton of digitopodium - * *Definition* = A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni] + * *Definition* = A subdivision of the autopod skeleton consisting of both acropodial skeleon and metapodial skeleton, but excluding the mesopodial/basopodial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni ] * *Comment* = Terminology notes: some sources call this the acropodium. see http://purl.obolibrary.org/obo/uberon/references/reference_0000019 ## Synonyms * autopod proper skeleton - * digitopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni] + * digitopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni ] ## Cross-references @@ -27,16 +27,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [digitopodium region](../../UBERON/40/UBERON_0012140.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012150 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_0012250.md b/md/UBERON/50/UBERON_0012250.md index cba377ab9a..5a5abdf647 100644 --- a/md/UBERON/50/UBERON_0012250.md +++ b/md/UBERON/50/UBERON_0012250.md @@ -11,7 +11,7 @@ ## Cross-references - * UMLS:C1707350 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervix_Columnar_Epithelium] + * UMLS:C1707350 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervix_Columnar_Epithelium ] * ncithesaurus:Cervix_Columnar_Epithelium ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glandular epithelium](../../UBERON/99/UBERON_0006799.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0012350.md b/md/UBERON/50/UBERON_0012350.md index 842620a2f3..bbf01bd165 100644 --- a/md/UBERON/50/UBERON_0012350.md +++ b/md/UBERON/50/UBERON_0012350.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012350 * *Label* = carpal pad - * *Definition* = An autopod pad found in the carpal region of a manus. Used for additional traction when stopping or descending a slope in digitigrade species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An autopod pad found in the carpal region of a manus. Used for additional traction when stopping or descending a slope in digitigrade species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod pad](../../UBERON/48/UBERON_0012348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012350 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0012450.md b/md/UBERON/50/UBERON_0012450.md index 8a5d4a676c..463a428934 100644 --- a/md/UBERON/50/UBERON_0012450.md +++ b/md/UBERON/50/UBERON_0012450.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012450 * *Label* = Meissner's corpuscle - * *Definition* = Meissner's corpuscles (or tactile corpuscles) are a type of mechanoreceptor. They are a type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] + * *Definition* = Meissner's corpuscles (or tactile corpuscles) are a type of mechanoreceptor. They are a type of nerve ending in the skin that is responsible for sensitivity to light touch. In particular, they have highest sensitivity (lowest threshold) when sensing vibrations lower than 50 Hertz. They are rapidly adaptive receptors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] ## Synonyms - * meisner%27s corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * meissner corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * meissner corpuscle end-organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * meissner%27s corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * meissner%27s corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * messier corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * messner%27s corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] - * tactile corpuscles of wagner and meissner [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meissner%27s_corpuscle] + * meisner%27s corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * meissner corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * meissner corpuscle end-organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * meissner%27s corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * meissner%27s corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * messier corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * messner%27s corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] + * tactile corpuscles of wagner and meissner [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meissner%27s_corpuscle ] ## Cross-references * FMA:83605 * SCTID:41421000 - * UMLS:C0205831 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Meissner_Corpuscle] + * UMLS:C0205831 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Meissner_Corpuscle ] * Wikipedia:Meissner%27s_corpuscle * ncithesaurus:Meissner_Corpuscle @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0012650.md b/md/UBERON/50/UBERON_0012650.md index 5228310a12..89ddfb086d 100644 --- a/md/UBERON/50/UBERON_0012650.md +++ b/md/UBERON/50/UBERON_0012650.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [connects](../../ts/core#connects.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) and [connects](../../ts/core#connects.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0013150.md b/md/UBERON/50/UBERON_0013150.md index 2f7e1dd914..1615083362 100644 --- a/md/UBERON/50/UBERON_0013150.md +++ b/md/UBERON/50/UBERON_0013150.md @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0013250.md b/md/UBERON/50/UBERON_0013250.md index da02ca1fef..8e56a7c669 100644 --- a/md/UBERON/50/UBERON_0013250.md +++ b/md/UBERON/50/UBERON_0013250.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013250 * *Label* = vesicular appendage of epoophoron - * *Definition* = In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesicular_appendages_of_epoophoron] + * *Definition* = In connection with the fimbriae of the uterine tube, or with the broad ligament close to them, there are frequently one or more small pedunculated vesicles. These are termed the vesicular appendages of the epoophoron. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesicular_appendages_of_epoophoron ] ## Synonyms - * appendix vesiculosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18696] - * hydatid of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18696] - * hydatid of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hydatid_of_Morgagni] + * appendix vesiculosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18696 ] + * hydatid of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18696 ] + * hydatid of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hydatid_of_Morgagni ] * appendage of epoophoron * appendage of epophoron - * appendices vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesicular_appendages_of_epoophoron] - * appendices vesiculosae epoophori [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesicular appendage of epoophoron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18696] + * appendices vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesicular_appendages_of_epoophoron ] + * appendices vesiculosae epoophori [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesicular appendage of epoophoron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18696 ] * vesicular appendage of epophoron ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013250 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0013450.md b/md/UBERON/50/UBERON_0013450.md index e6c24db180..a78cf3d779 100644 --- a/md/UBERON/50/UBERON_0013450.md +++ b/md/UBERON/50/UBERON_0013450.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013450 * *Label* = simian shelf - * *Definition* = The simian shelf is a bony thickening on the front of the ape mandible. Its function is to reinforce the jaw, though it also has the effect of considerably reducing the movement of the tongue by restricting the area available for muscles. Humans are the only apes to have protruding chins, though some fossils of early humans show evidence of a simian shelf. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Simian_shelf] + * *Definition* = The simian shelf is a bony thickening on the front of the ape mandible. Its function is to reinforce the jaw, though it also has the effect of considerably reducing the movement of the tongue by restricting the area available for muscles. Humans are the only apes to have protruding chins, though some fossils of early humans show evidence of a simian shelf. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Simian_shelf ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0013550.md b/md/UBERON/50/UBERON_0013550.md index fa9c8a1f19..bdbd144a25 100644 --- a/md/UBERON/50/UBERON_0013550.md +++ b/md/UBERON/50/UBERON_0013550.md @@ -6,25 +6,25 @@ ## Synonyms - * B09-19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1750] - * Brodmann (1909) area 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1750] - * Brodmann area 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68616] - * Brodmann area 19, peristriate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1750] - * Brodmann's area 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68616] - * Preoccipital area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68616] - * area 19 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68616] - * area 19 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1750] - * area peristriata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1750] - * B09-19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1750[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 19 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1028] - * area praeoccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1028[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * B09-19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1750 ] + * Brodmann (1909) area 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1750 ] + * Brodmann area 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68616 ] + * Brodmann area 19, peristriate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1750 ] + * Brodmann's area 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68616 ] + * Preoccipital area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68616 ] + * area 19 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68616 ] + * area 19 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1750 ] + * area peristriata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1750 ] + * B09-19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1750, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 19 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1028 ] + * area praeoccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1028, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:68616 * NIF_GrossAnatomy:birnlex_1750 - * NeuroNames:1028 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1750] - * UMLS:C1272537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1750] + * NeuroNames:1028 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1750 ] + * UMLS:C1272537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1750 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0013750.md b/md/UBERON/50/UBERON_0013750.md index 690e7fce65..fcaa15371b 100644 --- a/md/UBERON/50/UBERON_0013750.md +++ b/md/UBERON/50/UBERON_0013750.md @@ -6,7 +6,7 @@ ## Synonyms - * tibial metaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33135] + * tibial metaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33135 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metaphysis](../../UBERON/38/UBERON_0001438.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013750 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0014450.md b/md/UBERON/50/UBERON_0014450.md index ef2c07765b..208395629d 100644 --- a/md/UBERON/50/UBERON_0014450.md +++ b/md/UBERON/50/UBERON_0014450.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014450 * *Label* = pretectal nucleus - * *Definition* = any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009638] + * *Definition* = any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009638 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014450 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0014550.md b/md/UBERON/50/UBERON_0014550.md index ec7fde56a0..4fec83bdfd 100644 --- a/md/UBERON/50/UBERON_0014550.md +++ b/md/UBERON/50/UBERON_0014550.md @@ -6,8 +6,8 @@ ## Synonyms - * CA3 part of stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4112[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA3 stratum pyramidale hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4112] + * CA3 part of stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4112, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA3 stratum pyramidale hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4112 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus pyramidal layer](../../UBERON/13/UBERON_0002313.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014550 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0014650.md b/md/UBERON/50/UBERON_0014650.md index dee1c13c4a..fae8c78346 100644 --- a/md/UBERON/50/UBERON_0014650.md +++ b/md/UBERON/50/UBERON_0014650.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014650 * *Label* = dorsal hypothalamic nucleus - * *Definition* = A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002451[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A nerve cell nucleus situated in the dorsal portion of the intermediate hypothalamic region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002451, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * nucleus dorsalis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002451] + * nucleus dorsalis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002451 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014650 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0014850.md b/md/UBERON/50/UBERON_0014850.md index a2ee940c4b..fe50380a56 100644 --- a/md/UBERON/50/UBERON_0014850.md +++ b/md/UBERON/50/UBERON_0014850.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014850 * *Label* = hemomonochorial placental membrane - * *Definition* = A placental membrane that consists of a single layer of syncytiotrophoblast at term. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012126[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A placental membrane that consists of a single layer of syncytiotrophoblast at term. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012126, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * placenta hemomonochorial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012126] + * placenta hemomonochorial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012126 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9606 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014850 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0014950.md b/md/UBERON/50/UBERON_0014950.md index 6d972dc1b3..3c986789db 100644 --- a/md/UBERON/50/UBERON_0014950.md +++ b/md/UBERON/50/UBERON_0014950.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014950 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_0015050.md b/md/UBERON/50/UBERON_0015050.md index 618748c52f..e127a4a26c 100644 --- a/md/UBERON/50/UBERON_0015050.md +++ b/md/UBERON/50/UBERON_0015050.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015050 * *Label* = tarsus endochondral element - * *Definition* = A tarsus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A tarsus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * tarsus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * tarsus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * tarsus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * tarsus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) + * [tarsal bone](../../UBERON/47/UBERON_0001447.md)or[tarsus cartilage element](../../UBERON/41/UBERON_0010541.md)or[tarsus pre-cartilage condensation](../../UBERON/40/UBERON_0010540.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015050 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2000250.md b/md/UBERON/50/UBERON_2000250.md index 29dd272460..cdb513ffb0 100644 --- a/md/UBERON/50/UBERON_2000250.md +++ b/md/UBERON/50/UBERON_2000250.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000250 * *Label* = opercle - * *Definition* = Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. ## Synonyms - * opercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000250[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * operculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000250] - * operculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000250] + * opercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000250, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * operculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000250 ] + * operculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000250 ] ## Cross-references @@ -40,7 +40,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2000350.md b/md/UBERON/50/UBERON_2000350.md index 8a99a2dabe..0b92a5f1e1 100644 --- a/md/UBERON/50/UBERON_2000350.md +++ b/md/UBERON/50/UBERON_2000350.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000350 * *Label* = epipleural - * *Definition* = Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * epipleurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000350[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * pleuro?de [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000153] - * ?pipleural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * ?pipleure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000133] + * epipleurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000350, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * pleuro?de [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000153 ] + * ?pipleural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * ?pipleure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000133 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2000750.md b/md/UBERON/50/UBERON_2000750.md index 8256a52b57..d2ac3292de 100644 --- a/md/UBERON/50/UBERON_2000750.md +++ b/md/UBERON/50/UBERON_2000750.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000750[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000750, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_2000850.md b/md/UBERON/50/UBERON_2000850.md index f30c0495c1..c350da3682 100644 --- a/md/UBERON/50/UBERON_2000850.md +++ b/md/UBERON/50/UBERON_2000850.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000850[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000850, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_2001050.md b/md/UBERON/50/UBERON_2001050.md index 1e1b0c7e83..c2411c47c4 100644 --- a/md/UBERON/50/UBERON_2001050.md +++ b/md/UBERON/50/UBERON_2001050.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001050[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001050, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_2001150.md b/md/UBERON/50/UBERON_2001150.md index d91080639d..c332afee6f 100644 --- a/md/UBERON/50/UBERON_2001150.md +++ b/md/UBERON/50/UBERON_2001150.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001150 * *Label* = tooth 2D - * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 2 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001250.md b/md/UBERON/50/UBERON_2001250.md index 2a84e686fa..8b9ffcb304 100644 --- a/md/UBERON/50/UBERON_2001250.md +++ b/md/UBERON/50/UBERON_2001250.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001250 * *Label* = pharyngobranchial 2 bone - * *Definition* = Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 1 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * infrapharyngobranchial 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001250] + * infrapharyngobranchial 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001250 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001450.md b/md/UBERON/50/UBERON_2001450.md index 21054a0a1a..7206845422 100644 --- a/md/UBERON/50/UBERON_2001450.md +++ b/md/UBERON/50/UBERON_2001450.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001450 * *Label* = apical ectodermal ridge pelvic fin - * *Definition* = Apical ectodermal ridge that is part of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Apical ectodermal ridge that is part of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001550.md b/md/UBERON/50/UBERON_2001550.md index 7e7c701a0e..a92777e2a5 100644 --- a/md/UBERON/50/UBERON_2001550.md +++ b/md/UBERON/50/UBERON_2001550.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001550 * *Label* = obsolete caudal fin lepidotrichium - * *Definition* = Lepidotrichium which is part of the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lepidotrichium which is part of the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * caudal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001550] + * caudal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001550 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000174 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_2001650.md b/md/UBERON/50/UBERON_2001650.md index 6806319392..dbcad8658f 100644 --- a/md/UBERON/50/UBERON_2001650.md +++ b/md/UBERON/50/UBERON_2001650.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001650 * *Label* = pharyngobranchial 2 tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngobranchial 2 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001650] + * pharyngobranchial 2 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001650 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001750.md b/md/UBERON/50/UBERON_2001750.md index f78115d98c..f2499a1412 100644 --- a/md/UBERON/50/UBERON_2001750.md +++ b/md/UBERON/50/UBERON_2001750.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001750 * *Label* = rib of vertebra 6 - * *Definition* = Rib that articulates with the parapophysis of the sixth centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the sixth centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * sixth pleural rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001750] + * sixth pleural rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001750 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001850.md b/md/UBERON/50/UBERON_2001850.md index 168500a42d..e2d4c23f74 100644 --- a/md/UBERON/50/UBERON_2001850.md +++ b/md/UBERON/50/UBERON_2001850.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001850 * *Label* = ceratohyal-branchiostegal ray joint - * *Definition* = Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2001950.md b/md/UBERON/50/UBERON_2001950.md index 6d0b51ac0d..d724032c08 100644 --- a/md/UBERON/50/UBERON_2001950.md +++ b/md/UBERON/50/UBERON_2001950.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001950 * *Label* = inter-premaxillary joint - * *Definition* = Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [premaxilla](../../UBERON/44/UBERON_0002244.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2002050.md b/md/UBERON/50/UBERON_2002050.md index 6628da84f3..ab4811cf40 100644 --- a/md/UBERON/50/UBERON_2002050.md +++ b/md/UBERON/50/UBERON_2002050.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#source](../../ce/core#source.md)* = http://purl.obolibrary.org/obo/PHENOSCAPE_wd * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2002150.md b/md/UBERON/50/UBERON_2002150.md index fdfa8932a2..8e718f4d09 100644 --- a/md/UBERON/50/UBERON_2002150.md +++ b/md/UBERON/50/UBERON_2002150.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002150 * *Label* = vertebral element 10 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 9. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 9. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 10 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2002250.md b/md/UBERON/50/UBERON_2002250.md index b7203985f2..5c54013f3f 100644 --- a/md/UBERON/50/UBERON_2002250.md +++ b/md/UBERON/50/UBERON_2002250.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2005050.md b/md/UBERON/50/UBERON_2005050.md index 68aa5ddb19..c4465d5097 100644 --- a/md/UBERON/50/UBERON_2005050.md +++ b/md/UBERON/50/UBERON_2005050.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005050 * *Label* = palatocerebral artery - * *Definition* = The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PLA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005050] + * PLA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005050 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2005150.md b/md/UBERON/50/UBERON_2005150.md index 7c2aaeac27..ea476353aa 100644 --- a/md/UBERON/50/UBERON_2005150.md +++ b/md/UBERON/50/UBERON_2005150.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005150 * *Label* = basal regeneration epithelium of regenerating fin/limb - * *Definition* = Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Layer of the wound epidermis that surrounds the blastema in the fin or limb[ZFA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * basal wound epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:2005150] + * basal wound epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:2005150 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2005150 + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_2007050.md b/md/UBERON/50/UBERON_2007050.md index 1cf67673c7..e5fed6bc83 100644 --- a/md/UBERON/50/UBERON_2007050.md +++ b/md/UBERON/50/UBERON_2007050.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3000050.md b/md/UBERON/50/UBERON_3000050.md index b4ef01d200..a5249fbbf1 100644 --- a/md/UBERON/50/UBERON_3000050.md +++ b/md/UBERON/50/UBERON_3000050.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000050 * *Label* = braincase and auditory apparatus - * *Definition* = The part of the skull that encloses the brain and surrounds the inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = The part of the skull that encloses the brain and surrounds the inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3000450.md b/md/UBERON/50/UBERON_3000450.md index 216f228ffe..fbd73f1d16 100644 --- a/md/UBERON/50/UBERON_3000450.md +++ b/md/UBERON/50/UBERON_3000450.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3000650.md b/md/UBERON/50/UBERON_3000650.md index 9da3cf8888..8e6de5860f 100644 --- a/md/UBERON/50/UBERON_3000650.md +++ b/md/UBERON/50/UBERON_3000650.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000650 * *Label* = processus frontalis of maxilla - * *Definition* = Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms * processus frontalis - * processus praeorbitalis of the pars facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000650] + * processus praeorbitalis of the pars facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000650 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3000950.md b/md/UBERON/50/UBERON_3000950.md index 0a3579fdf0..13ac6b1712 100644 --- a/md/UBERON/50/UBERON_3000950.md +++ b/md/UBERON/50/UBERON_3000950.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000950 * *Label* = os triangulare - * *Definition* = Small, broadly triangular bar of bone lying across the ventral side of the pharynx at the junction of the M. genio-hyoideus and the M. rectus cervicis superficialis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Small, broadly triangular bar of bone lying across the ventral side of the pharynx at the junction of the M. genio-hyoideus and the M. rectus cervicis superficialis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms - * basi-branchial II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000950] - * os thyroideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000950] - * os triquetum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000950] - * sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000950] - * urohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000950] + * basi-branchial II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000950 ] + * os thyroideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000950 ] + * os triquetum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000950 ] + * sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000950 ] + * urohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000950 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3010350.md b/md/UBERON/50/UBERON_3010350.md index 84a8d6028a..7703ed9174 100644 --- a/md/UBERON/50/UBERON_3010350.md +++ b/md/UBERON/50/UBERON_3010350.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0007625 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/50/UBERON_3010450.md b/md/UBERON/50/UBERON_3010450.md index 63f6dab46c..fdbd48868b 100644 --- a/md/UBERON/50/UBERON_3010450.md +++ b/md/UBERON/50/UBERON_3010450.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3010650.md b/md/UBERON/50/UBERON_3010650.md index 6177ca6705..71906366cf 100644 --- a/md/UBERON/50/UBERON_3010650.md +++ b/md/UBERON/50/UBERON_3010650.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010650 * *Label* = cephalodorsosubpharyngeus - * *Definition* = One of the principal muscles used in swallowing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = One of the principal muscles used in swallowing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_3010750.md b/md/UBERON/50/UBERON_3010750.md index 35ef210a0e..f84517c89e 100644 --- a/md/UBERON/50/UBERON_3010750.md +++ b/md/UBERON/50/UBERON_3010750.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010750 * *Label* = descending branch of the vagus nerve - * *Definition* = Major branch of the vagus supplying parasympathetic innervation to viscera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Major branch of the vagus supplying parasympathetic innervation to viscera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_4200050.md b/md/UBERON/50/UBERON_4200050.md index f49328188d..8b99b1fa66 100644 --- a/md/UBERON/50/UBERON_4200050.md +++ b/md/UBERON/50/UBERON_4200050.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/50/UBERON_4200150.md b/md/UBERON/50/UBERON_4200150.md index 33b35e1982..ab39e22f82 100644 --- a/md/UBERON/50/UBERON_4200150.md +++ b/md/UBERON/50/UBERON_4200150.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0000051.md b/md/UBERON/51/UBERON_0000051.md index 2e8b1101f0..973b0228e8 100644 --- a/md/UBERON/51/UBERON_0000051.md +++ b/md/UBERON/51/UBERON_0000051.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000051 * *Label* = fornix of vagina - * *Definition* = The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_fornix] + * *Definition* = The deepest portions of the vagina, extending into the recesses created by the vaginal portion of cervix[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_fornix ] ## Synonyms - * fornix vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19985[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fornix vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19985, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * vaginal fornix * fornix - * vaginal fornices [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * vaginal fornices [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:19985 * SCTID:245475003 - * UMLS:C0227794 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vaginal_Fornix] + * UMLS:C0227794 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vaginal_Fornix ] * Wikipedia:Vaginal_fornix * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png * ncithesaurus:Vaginal_Fornix @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0000151.md b/md/UBERON/51/UBERON_0000151.md index 3e0d3ca350..dbc2ba424f 100644 --- a/md/UBERON/51/UBERON_0000151.md +++ b/md/UBERON/51/UBERON_0000151.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000151 * *Label* = pectoral fin - * *Definition* = Paired fin that is located in the thoracic region of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000147] + * *Definition* = Paired fin that is located in the thoracic region of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000147 ] ## Synonyms - * forefin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000147] - * nageoire pectorale@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000147] - * omoptrygie@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000147] - * thoracoptrygie@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000147] + * forefin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000147 ] + * nageoire pectorale@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000147 ] + * omoptrygie@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000147 ] + * thoracoptrygie@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000147 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [paired fin](../../UBERON/34/UBERON_0002534.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired fin that is located in the thoracic region of the body.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired fin that is located in the thoracic region of the body.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0000351.md b/md/UBERON/51/UBERON_0000351.md index 463407360d..d0ef4a612f 100644 --- a/md/UBERON/51/UBERON_0000351.md +++ b/md/UBERON/51/UBERON_0000351.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000351 * *Label* = nuchal ligament - * *Definition* = a fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebr. As it is required for running, not all animals have a nuchal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nuchal_ligament] + * *Definition* = a fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebr. As it is required for running, not all animals have a nuchal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nuchal_ligament ] ## Synonyms - * ligament of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13427] - * ligamentum nuchae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13427[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paddywhack [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paddywhack] + * ligament of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13427 ] + * ligamentum nuchae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13427, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paddywhack [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paddywhack ] * paxwax ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0000451.md b/md/UBERON/51/UBERON_0000451.md index adc10335dd..1d2e4a5730 100644 --- a/md/UBERON/51/UBERON_0000451.md +++ b/md/UBERON/51/UBERON_0000451.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000451 * *Label* = prefrontal cortex - * *Definition* = The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090801] + * *Definition* = The anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.nnThis brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals.nnThe most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes).nnMany authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. - definition adapted from Wikipedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090801 ] * *Comment* = TODO - check MA ## Synonyms - * prefrontal association cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:224850] - * frontal association cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000906[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW] - * prefrontal association complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002807] + * prefrontal association cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:224850 ] + * frontal association cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000906, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW ] + * prefrontal association complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002807 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0000951.md b/md/UBERON/51/UBERON_0000951.md index 770a4d44b0..76f90e1d04 100644 --- a/md/UBERON/51/UBERON_0000951.md +++ b/md/UBERON/51/UBERON_0000951.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000951 * *Label* = rotator muscle of the vertebral column - * *Definition* = Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/rotator+muscle] + * *Definition* = Any of a number of short transversospinal muscles chiefly developed in cervical, lumbar, and thoracic regions, arising from the transverse process of one vertebra and inserted into the root of the spinous process of the next two or three vertebrae above, with nerve supply from the dorsal branches of the spinal nerve, and whose actions rotate the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/rotator+muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * rotator muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23081] + * rotator muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23081 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001051.md b/md/UBERON/51/UBERON_0001051.md index f5a792a678..e53ad2f0ff 100644 --- a/md/UBERON/51/UBERON_0001051.md +++ b/md/UBERON/51/UBERON_0001051.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001051 * *Label* = hypopharynx - * *Definition* = Bottom part of the pharynx, and is the part of the throat that connects to the esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypopharynx] + * *Definition* = Bottom part of the pharynx, and is the part of the throat that connects to the esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypopharynx ] ## Synonyms - * laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54877] - * laryngopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54877] - * pars laryngea pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001740] - * pars laryngea pharyngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypopharynx[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54877 ] + * laryngopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54877 ] + * pars laryngea pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001740 ] + * pars laryngea pharyngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypopharynx, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A03.867.490 * OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA * SCTID:281490009 - * UMLS:C0020629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypopharynx] + * UMLS:C0020629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypopharynx ] * VHOG:0000445 * Wikipedia:Hypopharynx * http://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The inferior portion of the pharynx, between the epiglottis and the larynx. [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hypopharyngeal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001151.md b/md/UBERON/51/UBERON_0001151.md index 9b57b7e340..7cfcbcc517 100644 --- a/md/UBERON/51/UBERON_0001151.md +++ b/md/UBERON/51/UBERON_0001151.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001151 * *Label* = tail of pancreas - * *Definition* = The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tail_of_pancreas] + * *Definition* = The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tail_of_pancreas ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * left extremity of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14519] + * left extremity of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14519 ] * pancreas tail - * pancreatic tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14519] - * cauda pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tail_of_pancreas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pancreatic tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14519 ] + * cauda pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tail_of_pancreas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:14519 * MA:0000123 * SCTID:245382003 - * UMLS:C0227590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tail_of_the_Pancreas] + * UMLS:C0227590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tail_of_the_Pancreas ] * VHOG:0000452 * Wikipedia:Tail_of_pancreas * http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001251.md b/md/UBERON/51/UBERON_0001251.md index f7d88e3f45..fddaf8e1d0 100644 --- a/md/UBERON/51/UBERON_0001251.md +++ b/md/UBERON/51/UBERON_0001251.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001251 * *Label* = marginal zone of spleen - * *Definition* = region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Marginal_zone] + * *Definition* = region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Marginal_zone ] * *Comment* = WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line. Not to be confused with: Marginal zone of spleen (e.g. AAO:0010448 marginal zone) ## Synonyms * junctional zone of spleen * spleen marginal zone - * marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Marginal_zone] + * marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Marginal_zone ] ## Cross-references * FMA:15852 * MA:0000755 - * UMLS:C1711368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Marginal_Zone] + * UMLS:C1711368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Marginal_Zone ] * Wikipedia:Marginal_zone * http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001351.md b/md/UBERON/51/UBERON_0001351.md index d1635b0e6e..51b646c7eb 100644 --- a/md/UBERON/51/UBERON_0001351.md +++ b/md/UBERON/51/UBERON_0001351.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001351 * *Label* = lacrimal sac - * *Definition* = The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_sac] + * *Definition* = The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_sac ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * saccus lacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_sac[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * saccus lacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_sac, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20289 * MA:0001298 * SCTID:362534009 - * UMLS:C0229289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Sac] + * UMLS:C0229289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Sac ] * Wikipedia:Lacrimal_sac * http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png * ncithesaurus:Lacrimal_Sac @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001451.md b/md/UBERON/51/UBERON_0001451.md index 8743d90e5e..6ee804fbd7 100644 --- a/md/UBERON/51/UBERON_0001451.md +++ b/md/UBERON/51/UBERON_0001451.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001451 * *Label* = navicular bone of pes - * *Definition* = The navicular bone is one of the tarsal bones, found in the pes. It is located on the medial side of the pes, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navicular_bone] + * *Definition* = The navicular bone is one of the tarsal bones, found in the pes. It is located on the medial side of the pes, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navicular_bone ] * *Comment* = taxon notes: connections vary depending on species. AAO: Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5. In humans: there is a cuboid instead of distal tarsal 4 and 5 - may articulate laterally with the cuboid[WP]. TODO - add correct VSAO xref (currently broken) ## Synonyms - * centrale (hind) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000924] + * centrale (hind) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000924 ] * navicular - * navicular bone of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24499] - * navicular of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24499] + * navicular bone of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24499 ] + * navicular of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24499 ] * navicular of pes - * os naviculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24499[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os naviculare pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002356] + * os naviculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24499, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os naviculare pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002356 ] * centrale * central tarsal bone - * os naviculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navicular_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os naviculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navicular_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0001349 * OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA * SCTID:182100005 - * UMLS:C0223947 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Navicular_Bone] + * UMLS:C0223947 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Navicular_Bone ] * Wikipedia:Navicular_bone * galen:Navicular * http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001551.md b/md/UBERON/51/UBERON_0001551.md index 4c293e7484..501f78a489 100644 --- a/md/UBERON/51/UBERON_0001551.md +++ b/md/UBERON/51/UBERON_0001551.md @@ -7,7 +7,7 @@ ## Synonyms - * sural vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44561] + * sural vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44561 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001651.md b/md/UBERON/51/UBERON_0001651.md index 2c2f904b8f..df6eb7b5c5 100644 --- a/md/UBERON/51/UBERON_0001651.md +++ b/md/UBERON/51/UBERON_0001651.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001651 * *Label* = right pulmonary artery - * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_pulmonary_artery] + * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_pulmonary_artery ] * *Comment* = TODO - add class 'pulmonary artery tree organ' ## Synonyms * right main pulmonary artery * right pulmonary arterial tree - * arteria pulmonalis dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_pulmonary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria pulmonalis dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_pulmonary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50872 * MA:0002500 * SCTID:244235003 - * UMLS:C0923924 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Pulmonary_Artery] + * UMLS:C0923924 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Pulmonary_Artery ] * Wikipedia:Right_pulmonary_artery * galen:RightPulmonaryArtery * http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001751.md b/md/UBERON/51/UBERON_0001751.md index 34188979b3..7dc7c3912a 100644 --- a/md/UBERON/51/UBERON_0001751.md +++ b/md/UBERON/51/UBERON_0001751.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001751 * *Label* = dentine - * *Definition* = Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000069[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000069, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance ## Synonyms - * dentin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002542] + * dentin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002542 ] * dentine of tooth - * predentin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0070468] + * predentin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0070468 ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A14.254.900.280 * SCTID:362112004 * TAO:0005143 - * UMLS:C0011429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dentin] + * UMLS:C0011429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dentin ] * VHOG:0001589 * VSAO:0000069 * Wikipedia:Dentin @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Dentine is a bona fide vertebrate novelty, and dentine-secreting odontoblasts represent a cell type that is exclusively derived from the neural crest.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dentinal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001851.md b/md/UBERON/51/UBERON_0001851.md index 0a5a7fd714..982b91f9d5 100644 --- a/md/UBERON/51/UBERON_0001851.md +++ b/md/UBERON/51/UBERON_0001851.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001851 * *Label* = cortex - * *Definition* = Outermost layer of an organ[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortex_(anatomy)] + * *Definition* = Outermost layer of an organ[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortex_(anatomy) ] * *Comment* = Note that this class is used more generically than in FMA, and includes e.g. cortex of hair ## Synonyms - * cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61109] + * cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61109 ] * cortex of organ ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cortical - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0001951.md b/md/UBERON/51/UBERON_0001951.md index 2e2ef36216..ab9771bf23 100644 --- a/md/UBERON/51/UBERON_0001951.md +++ b/md/UBERON/51/UBERON_0001951.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001951 * *Label* = epithelium of nasopharynx - * *Definition* = An epithelium that is part of a nasopharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a nasopharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * nasopharynx epithelium - * rhinopharynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharyngeal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004480] + * rhinopharynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharyngeal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004480 ] ## Cross-references @@ -30,7 +30,7 @@ * EMAPA:17672 * FMA:62452 * MA:0001865 - * UMLS:C1179157 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasopharynx_Epithelium] + * UMLS:C1179157 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasopharynx_Epithelium ] * VHOG:0001038 * ncithesaurus:Nasopharynx_Epithelium @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003237 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002051.md b/md/UBERON/51/UBERON_0002051.md index 77a6223fd3..4fd4cd097e 100644 --- a/md/UBERON/51/UBERON_0002051.md +++ b/md/UBERON/51/UBERON_0002051.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002051 * *Label* = epithelium of bronchiole - * *Definition* = An epithelium that is part of a bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that in FMA2 and FMA3, lobular bronchiole is an exact synonym of bronchiole; however there are two distinct terms for the corresponding epithelium. ## Synonyms - * bronchiolar epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001866] - * bronchiole epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolar epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001866 ] + * bronchiole epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchiole epithelium - * epithelial tissue of bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:62497 * FMA:69077 * MA:0001772 - * UMLS:C1181296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchiole_Epithelium] + * UMLS:C1181296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchiole_Epithelium ] * ncithesaurus:Bronchiole_Epithelium ## Subsets @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchiole](../../UBERON/86/UBERON_0002186.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002151.md b/md/UBERON/51/UBERON_0002151.md index 8f6e0569dd..05aa7396f6 100644 --- a/md/UBERON/51/UBERON_0002151.md +++ b/md/UBERON/51/UBERON_0002151.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002151 * *Label* = pontine nuclear group - * *Definition* = The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_nuclei] + * *Definition* = The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_nuclei ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * pontine gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1516] - * pontine nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1516] - * pontine nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72512] + * pontine gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1516 ] + * pontine nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1516 ] + * pontine nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72512 ] * pontine nuclei * pontine nucleus - * Pontine grey matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PG] - * nuclei brachii pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:617[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nuclei pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003396] - * nuclei pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:617[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pontine gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003396] - * posterior group of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PG] + * Pontine grey matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PG ] + * nuclei brachii pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:617, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nuclei pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003396 ] + * nuclei pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:617, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pontine gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003396 ] + * posterior group of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PG ] ## Cross-references @@ -31,9 +31,9 @@ * FMA:72512 * MA:0001021 * NIF_GrossAnatomy:birnlex_1516 - * NeuroNames:617 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1516] + * NeuroNames:617 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1516 ] * SCTID:304942009 - * UMLS:C0228448 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1516] + * UMLS:C0228448 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1516 ] * Wikipedia:Pontine_nuclei * http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002251.md b/md/UBERON/51/UBERON_0002251.md index 1b60f44411..0233417095 100644 --- a/md/UBERON/51/UBERON_0002251.md +++ b/md/UBERON/51/UBERON_0002251.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002251 * *Label* = iliocostalis muscle - * *Definition* = The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis] + * *Definition* = The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis ] ## Synonyms * iliocostal muscle * iliocostalis - * musculus iliocostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliocostalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus iliocostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliocostalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * lateral column of erector spinae ## Cross-references @@ -17,7 +17,7 @@ * FMA:77177 * MA:0002319 * SCTID:244854008 - * UMLS:C0224304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliocostal_Muscle] + * UMLS:C0224304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliocostal_Muscle ] * Wikipedia:Iliocostalis * http://upload.wikimedia.org/wikipedia/commons/8/89/Iliostalis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002351.md b/md/UBERON/51/UBERON_0002351.md index 1ab41bb82d..bc3c5ca6f7 100644 --- a/md/UBERON/51/UBERON_0002351.md +++ b/md/UBERON/51/UBERON_0002351.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002351 * *Label* = sinoatrial node - * *Definition* = The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003163[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinoatrial_node] + * *Definition* = The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003163, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinoatrial_node ] * *Comment* = WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node. ## Synonyms - * Koch's node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * SA nodal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * SA node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * cardiac pacemaker [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * node of Keith-Flack [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * nodus sinuatrialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sinoatrial node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * sinu-atrial node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * sinuatrial nodal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * sinuatrial node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * sinus node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * sinus node of Keith and Flack [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9477] - * nodus sinuatrialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinoatrial_node[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Koch's node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * SA nodal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * SA node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * cardiac pacemaker [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * node of Keith-Flack [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * nodus sinuatrialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sinoatrial node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * sinu-atrial node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * sinuatrial nodal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * sinuatrial node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * sinus node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * sinus node of Keith and Flack [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9477 ] + * nodus sinuatrialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinoatrial_node, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,7 +33,7 @@ * OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g * SCTID:277687007 * TAO:0005069 - * UMLS:C0037189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sinoatrial_Node] + * UMLS:C0037189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sinoatrial_Node ] * Wikipedia:Sinoatrial_node * ZFA:0005069 * http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg @@ -60,8 +60,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002451.md b/md/UBERON/51/UBERON_0002451.md index 37ddc486fa..8276388c51 100644 --- a/md/UBERON/51/UBERON_0002451.md +++ b/md/UBERON/51/UBERON_0002451.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002451 * *Label* = uterine gland - * *Definition* = tube like gland lined by ciliated columnar epithelium[WP]. The mucous secreting gland associated with the epithelium lining the uterus. These glands develop and secrete each menstrual cycle and are thought to provide initial blastocyst nutrition prior to implantation[BTO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_glands] + * *Definition* = tube like gland lined by ciliated columnar epithelium[WP]. The mucous secreting gland associated with the epithelium lining the uterus. These glands develop and secrete each menstrual cycle and are thought to provide initial blastocyst nutrition prior to implantation[BTO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_glands ] * *Comment* = todo - check FMA ## Synonyms - * glandulae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71647[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandulae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71647, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * uterine glands * uterine glands set - * glandulae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_glands[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandular part of endometrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86488] - * set of uterine glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71647] + * glandulae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_glands, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandular part of endometrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86488 ] + * set of uterine glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71647 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:86488 * MA:0001726 * SCTID:361377009 - * UMLS:C1183035 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Uterine_Gland] + * UMLS:C1183035 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Uterine_Gland ] * Wikipedia:Uterine_glands * http://upload.wikimedia.org/wikipedia/commons/2/28/Gray1169.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray1169.png/200px-Gray1169.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002551.md b/md/UBERON/51/UBERON_0002551.md index bbe3d0dce2..3faad00e21 100644 --- a/md/UBERON/51/UBERON_0002551.md +++ b/md/UBERON/51/UBERON_0002551.md @@ -7,17 +7,17 @@ ## Synonyms - * NIC [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * NIC [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * interstitial nucleus of medial longitudinal fasciculus (crosby) - * interstitial nucleus of medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72432] - * nucleus interstitialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72432[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ICjl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1008[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * interstitial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72432] - * interstitial nucleus of the medial longitudinal fascicle (Boyce 1895) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:515] - * interstitial nucleus of the medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IMLF] - * interstitial nucleus ofCajal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:INC] - * nucleus interstitialis Cajal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:515[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the posterior commissure (Kvlliker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:515] + * interstitial nucleus of medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72432 ] + * nucleus interstitialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72432, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ICjl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1008, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * interstitial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72432 ] + * interstitial nucleus of the medial longitudinal fascicle (Boyce 1895) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:515 ] + * interstitial nucleus of the medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IMLF ] + * interstitial nucleus ofCajal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:INC ] + * nucleus interstitialis Cajal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:515, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the posterior commissure (Kvlliker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:515 ] ## Cross-references @@ -30,9 +30,9 @@ * BM:MB-ICA * FMA:72432 * NIF_GrossAnatomy:birnlex_1008 - * NeuroNames:515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1008] + * NeuroNames:515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1008 ] * SCTID:369251002 - * UMLS:C0228418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1008] + * UMLS:C0228418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1008 ] ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002651.md b/md/UBERON/51/UBERON_0002651.md index e4744c49c9..d06f956cea 100644 --- a/md/UBERON/51/UBERON_0002651.md +++ b/md/UBERON/51/UBERON_0002651.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002651 * *Label* = anterior horn of lateral ventricle - * *Definition* = The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_lateral_ventricle] + * *Definition* = The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_lateral_ventricle ] ## Synonyms - * anterior horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74520] - * cornu anterius ventriculi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74520[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * frontal horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74520] - * cornu anterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_lateral_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74520 ] + * cornu anterius ventriculi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74520, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * frontal horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74520 ] + * cornu anterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_lateral_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,8 +20,8 @@ * NIF_GrossAnatomy:birnlex_1279 * NeuroNames:220 * SCTID:279247001 - * UMLS:C0152281 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle] - * UMLS:C1281033 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1279] + * UMLS:C0152281 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle ] + * UMLS:C1281033 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1279 ] * Wikipedia:Anterior_horn_of_lateral_ventricle * http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002751.md b/md/UBERON/51/UBERON_0002751.md index 0295ecefd4..ece3a650da 100644 --- a/md/UBERON/51/UBERON_0002751.md +++ b/md/UBERON/51/UBERON_0002751.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002751 * *Label* = inferior temporal gyrus - * *Definition* = The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_temporal_gyrus] + * *Definition* = The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_temporal_gyrus ] ## Synonyms - * gyrus temporalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1577] + * gyrus temporalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1577 ] * lateral occipitotemporal gyrus (heimer-83) - * gyrus temporalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_temporal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus temporalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_temporal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * BM:Tel-ITG * FMA:61907 * NIF_GrossAnatomy:birnlex_1577 - * NeuroNames:138 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1577] + * NeuroNames:138 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1577 ] * SCTID:279191005 * Wikipedia:Inferior_temporal_gyrus * http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002851.md b/md/UBERON/51/UBERON_0002851.md index b45f4c0bfc..936573114c 100644 --- a/md/UBERON/51/UBERON_0002851.md +++ b/md/UBERON/51/UBERON_0002851.md @@ -6,15 +6,15 @@ ## Synonyms - * eighth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6328] - * eighth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6328] + * eighth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6328 ] + * eighth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6328 ] ## Cross-references * EMAPA:25181 * FMA:6328 * NIF_GrossAnatomy:birnlex_2618 - * UMLS:C0501706 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2618] + * UMLS:C0501706 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2618 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0002951.md b/md/UBERON/51/UBERON_0002951.md index a02b5e4af1..175bf12467 100644 --- a/md/UBERON/51/UBERON_0002951.md +++ b/md/UBERON/51/UBERON_0002951.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002951 * *Label* = regional part of intermediate hypothalamic region - * *Definition* = A regional part of brain that is part of a intermediate hypothalamic region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a intermediate hypothalamic region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * intermediate hypothalamic region segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62310] - * segment of intermediate hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_767] + * intermediate hypothalamic region segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62310 ] + * segment of intermediate hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_767 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intermediate hypothalamic region](../../UBERON/55/UBERON_0002555.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003051.md b/md/UBERON/51/UBERON_0003051.md index 4cecf35c38..299c5c6634 100644 --- a/md/UBERON/51/UBERON_0003051.md +++ b/md/UBERON/51/UBERON_0003051.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003051 * *Label* = ear vesicle - * *Definition* = The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002661[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009806[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_vesicle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002661, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009806, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_vesicle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms * otic vesicle * OV - * acoustic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001148] - * auditory vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002661] + * acoustic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001148 ] + * auditory vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002661 ] * otocyst ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:16669 * SCTID:308792006 * TAO:0000051 - * UMLS:C1518678 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Otic_Vesicle] + * UMLS:C1518678 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Otic_Vesicle ] * VHOG:0001148 * Wikipedia:Otic_vesicle * XAO:0000006 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [internal ear](../../UBERON/46/UBERON_0001846.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The inner ear develops embryonically in all vertebrates as an invagination of the ectodermal otic placode to form an otic vesicle.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004373 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003151.md b/md/UBERON/51/UBERON_0003151.md index 2f74e9b0b6..80f7906f80 100644 --- a/md/UBERON/51/UBERON_0003151.md +++ b/md/UBERON/51/UBERON_0003151.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004478 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000345 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003151 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/51/UBERON_0003251.md b/md/UBERON/51/UBERON_0003251.md index 04c7b23279..f1535988fb 100644 --- a/md/UBERON/51/UBERON_0003251.md +++ b/md/UBERON/51/UBERON_0003251.md @@ -7,8 +7,8 @@ ## Synonyms - * temporal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63867] - * temporal region of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63867] + * temporal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63867 ] + * temporal region of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63867 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003351.md b/md/UBERON/51/UBERON_0003351.md index 9387bbc24f..8d982477ce 100644 --- a/md/UBERON/51/UBERON_0003351.md +++ b/md/UBERON/51/UBERON_0003351.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003351 * *Label* = pharyngeal epithelium - * *Definition* = An epithelium that is part of a pharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003451.md b/md/UBERON/51/UBERON_0003451.md index 5f445bfe95..a94f6842b0 100644 --- a/md/UBERON/51/UBERON_0003451.md +++ b/md/UBERON/51/UBERON_0003451.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003451 * *Label* = lower jaw incisor - * *Definition* = An incisor tooth that is part of a lower jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An incisor tooth that is part of a lower jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * incisor of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lower jaw incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mandibular incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001942] - * ventral mandibular arch incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower primary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84215] - * lower permanent incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55713] - * lower secondary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55713] - * mandibular secondary incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55713] + * incisor of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lower jaw incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mandibular incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001942 ] + * ventral mandibular arch incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower primary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84215 ] + * lower permanent incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55713 ] + * lower secondary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55713 ] + * mandibular secondary incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55713 ] ## Cross-references @@ -29,7 +29,7 @@ * FMA:55713 * MA:0001600 * SCTID:420793009 - * UMLS:C1708755 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Jaw_Incisor] + * UMLS:C1708755 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Jaw_Incisor ] * ncithesaurus:Lower_Jaw_Incisor ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [incisor tooth](../../UBERON/98/UBERON_0001098.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003551.md b/md/UBERON/51/UBERON_0003551.md index cd84824b8c..c51b230c1b 100644 --- a/md/UBERON/51/UBERON_0003551.md +++ b/md/UBERON/51/UBERON_0003551.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003551 * *Label* = midbrain pia mater - * *Definition* = A pia mater that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesencephalon pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000467] + * midbrain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesencephalon pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000467 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pia mater that is part of the midbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003651.md b/md/UBERON/51/UBERON_0003651.md index b2f29c67ce..755da7d083 100644 --- a/md/UBERON/51/UBERON_0003651.md +++ b/md/UBERON/51/UBERON_0003651.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003651 * *Label* = metatarsal bone of digit 2 - * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot digit 2 metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foot digit 2 metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * metatarsal 2 - * metatarsal II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000926] - * metatarsal bone digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001370] - * metatarsal bone of foot digit 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * second metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24503] + * metatarsal II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000926 ] + * metatarsal bone digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001370 ] + * metatarsal bone of foot digit 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * second metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24503 ] * toe 2 metatarsal * toe 2 metatarsus @@ -23,7 +23,7 @@ * FMA:24503 * MA:0001370 * SCTID:182128004 - * UMLS:C1709000 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone_Digit_2] + * UMLS:C1709000 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone_Digit_2 ] * ncithesaurus:Metatarsal_Bone_Digit_2 ## Subsets @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of pedal digit 2](../../UBERON/33/UBERON_0004333.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO] * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003851.md b/md/UBERON/51/UBERON_0003851.md index dcdfd95017..363cd72d13 100644 --- a/md/UBERON/51/UBERON_0003851.md +++ b/md/UBERON/51/UBERON_0003851.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003851 * *Label* = diencephalon neural crest - * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000811] - * future diencephalon neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000603] - * neural crest diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000811] - * neural crest of future diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16518] + * diencephalic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000811 ] + * future diencephalon neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000603 ] + * neural crest diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000811 ] + * neural crest of future diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16518 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0003951.md b/md/UBERON/51/UBERON_0003951.md index 1027767b95..64b428e649 100644 --- a/md/UBERON/51/UBERON_0003951.md +++ b/md/UBERON/51/UBERON_0003951.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003951 * *Label* = ocular fundus - * *Definition* = the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002864[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_(eye)] + * *Definition* = the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002864, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_(eye) ] * *Comment* = TODO - check relationships ## Synonyms * eye fundus - * fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0001098] + * fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0001098 ] * fundus oculi * fundus of eye @@ -19,7 +19,7 @@ * MESH:A09.371.729.313 * RETIRED_EHDAA2:0000583 * SCTID:362519003 - * UMLS:C0740422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fundus] + * UMLS:C0740422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fundus ] * Wikipedia:Fundus_(eye) * galen:FundusOculi * ncithesaurus:Fundus @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004051.md b/md/UBERON/51/UBERON_0004051.md index cbcbd23762..6953966dc7 100644 --- a/md/UBERON/51/UBERON_0004051.md +++ b/md/UBERON/51/UBERON_0004051.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004051 * *Label* = lateral cerebellomedullary cistern - * *Definition* = the space between the cerebellum and the lateral aspect of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009034] + * *Definition* = the space between the cerebellum and the lateral aspect of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009034 ] ## Synonyms - * cisterna cerebellomedullaris lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009034] + * cisterna cerebellomedullaris lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009034 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004151.md b/md/UBERON/51/UBERON_0004151.md index d54821ca6d..8d83de4f13 100644 --- a/md/UBERON/51/UBERON_0004151.md +++ b/md/UBERON/51/UBERON_0004151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004151 * *Label* = cardiac chamber - * *Definition* = A cardiac chamber surrounds an enclosed cavity within the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003205] + * *Definition* = A cardiac chamber surrounds an enclosed cavity within the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003205 ] * *Comment* = generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004251.md b/md/UBERON/51/UBERON_0004251.md index e508e5c116..4072f35aaf 100644 --- a/md/UBERON/51/UBERON_0004251.md +++ b/md/UBERON/51/UBERON_0004251.md @@ -3,85 +3,85 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004251 * *Label* = hindlimb zeugopod bone - * *Definition* = A bone that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower leg bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000676] - * middle limb segment of hind limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower leg bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000676 ] + * middle limb segment of hind limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -97,15 +97,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004451.md b/md/UBERON/51/UBERON_0004451.md index df26dd7816..7e00a811be 100644 --- a/md/UBERON/51/UBERON_0004451.md +++ b/md/UBERON/51/UBERON_0004451.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004451 * *Label* = trunk or cervical vertebra - * *Definition* = A vertebra in the trunk or cervical region. Includes all cervical, thoracic and lumbar vertebrae, but excludes caudal vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = A vertebra in the trunk or cervical region. Includes all cervical, thoracic and lumbar vertebrae, but excludes caudal vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] * *Comment* = In humans, there are 24 presacral vertebrae (7 cervical, 12 thoracic, and 5 lumbar). AO notes: it's not clear if the XAO class belongs here or below ## Synonyms - * presacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002869] + * presacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002869 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [cervical vertebra](../../UBERON/13/UBERON_0002413.md)or[trunk vertebra](../../UBERON/77/UBERON_0011677.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004551.md b/md/UBERON/51/UBERON_0004551.md index 45fd6536cd..d30d832036 100644 --- a/md/UBERON/51/UBERON_0004551.md +++ b/md/UBERON/51/UBERON_0004551.md @@ -7,9 +7,9 @@ ## Synonyms - * arteriae digitales plantares propriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71564[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plantar digital arteries proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71564] - * plantar digital arteries proper set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71564] + * arteriae digitales plantares propriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71564, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plantar digital arteries proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71564 ] + * plantar digital arteries proper set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71564 ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:71564 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004551 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/51/UBERON_0004651.md b/md/UBERON/51/UBERON_0004651.md index c410de9bbc..3c1eacddd6 100644 --- a/md/UBERON/51/UBERON_0004651.md +++ b/md/UBERON/51/UBERON_0004651.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004651 * *Label* = scapula spine - * *Definition* = a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spine_of_scapula] + * *Definition* = a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spine_of_scapula ] ## Synonyms - * spine of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13453] - * scapular spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13453[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002806] - * spina scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spine_of_scapula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spine of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13453 ] + * scapular spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13453, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002806 ] + * spina scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spine_of_scapula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = the cleithrum, the major shoulder bone of extinct land vertebrate ancestors,.. appears to survive as the scapular spine in living mammals[Matsuoka, PMC1352163] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004751.md b/md/UBERON/51/UBERON_0004751.md index cd21e69e19..5745273db4 100644 --- a/md/UBERON/51/UBERON_0004751.md +++ b/md/UBERON/51/UBERON_0004751.md @@ -6,7 +6,7 @@ ## Synonyms - * hypohyals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001381[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hypohyals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001381, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired element that articulates anterioly with the basihyal and posteriorly with the ceratohyal hypohyals.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004851.md b/md/UBERON/51/UBERON_0004851.md index a724e7fc03..499c7b6677 100644 --- a/md/UBERON/51/UBERON_0004851.md +++ b/md/UBERON/51/UBERON_0004851.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004851 * *Label* = aorta endothelium - * *Definition* = An endothelium that is part of an aorta [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of an aorta [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adult aorta endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of trunk of systemic arterial tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of systemic arterial tree endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aortic endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000394] + * adult aorta endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of trunk of systemic arterial tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of systemic arterial tree endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aortic endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000394 ] ## Cross-references @@ -22,7 +22,7 @@ * CALOHA:TS-0047 * EFO:0002597 * MA:0000701 - * UMLS:C1706824 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aorta_Endothelium] + * UMLS:C1706824 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aorta_Endothelium ] * ncithesaurus:Aorta_Endothelium ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0004951.md b/md/UBERON/51/UBERON_0004951.md index 4d0193cca3..54d90a0296 100644 --- a/md/UBERON/51/UBERON_0004951.md +++ b/md/UBERON/51/UBERON_0004951.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004951 * *Label* = submucosa of segmental bronchus - * *Definition* = A submucosa that is part of a segmental bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a segmental bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segmental bronchial submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62670] - * segmental bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of tertiary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tertiary bronchus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * segmental bronchial submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62670 ] + * segmental bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of tertiary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tertiary bronchus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [segmental bronchus](../../UBERON/84/UBERON_0002184.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005051.md b/md/UBERON/51/UBERON_0005051.md index a46032971f..cfb197453f 100644 --- a/md/UBERON/51/UBERON_0005051.md +++ b/md/UBERON/51/UBERON_0005051.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005051 * *Label* = mediastinum testis - * *Definition* = The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabecul) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mediastinum_testis] + * *Definition* = The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabecul) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mediastinum_testis ] ## Synonyms - * body of highmore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19812] + * body of highmore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19812 ] * hilum of testicle - * mediastinum of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19812] - * testis mediastinum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19812] + * mediastinum of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19812 ] + * testis mediastinum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19812 ] ## Cross-references @@ -30,7 +30,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) * [has_part](../../BFO/51/BFO_0000051.md) some [connective tissue](../../UBERON/84/UBERON_0002384.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mediastinum](../../UBERON/28/UBERON_0003728.md) ## Equivalencies @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005151.md b/md/UBERON/51/UBERON_0005151.md index 3bafa80416..4123aa33f8 100644 --- a/md/UBERON/51/UBERON_0005151.md +++ b/md/UBERON/51/UBERON_0005151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005151 * *Label* = metanephric proximal tubule - * *Definition* = The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072288] + * *Definition* = The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072288 ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [proximal tubule](../../UBERON/34/UBERON_0004134.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005131 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005251.md b/md/UBERON/51/UBERON_0005251.md index 16a8faa066..8b8800a4d6 100644 --- a/md/UBERON/51/UBERON_0005251.md +++ b/md/UBERON/51/UBERON_0005251.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005251 * *Label* = yolk sac cavity - * *Definition* = An anatomical cavity that is part of a yolk sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a yolk sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = In mammals, the yolk sac cavity contains fluid rather than platelets[Kardong] AO notes: in EHDAA2, there are separate primary and secondary yolk sac cavities ## Synonyms - * cavity of yolk sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63942] + * cavity of yolk sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63942 ] * yolk sac lumen ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005351.md b/md/UBERON/51/UBERON_0005351.md index 577fcff349..2bade5dfd7 100644 --- a/md/UBERON/51/UBERON_0005351.md +++ b/md/UBERON/51/UBERON_0005351.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005351 * *Label* = paraflocculus - * *Definition* = .[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010007] + * *Definition* = .[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010007 ] ## Synonyms - * cerebellar tonsil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081212] - * hemispheric lobule IX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081212] - * neuraxis paraflocculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83885] - * paraflocculus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83885] - * paraflocculus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83885] - * tonsil (HXI) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081212] - * tonsilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081212] + * cerebellar tonsil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081212 ] + * hemispheric lobule IX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081212 ] + * neuraxis paraflocculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83885 ] + * paraflocculus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83885 ] + * paraflocculus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83885 ] + * tonsil (HXI) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081212 ] + * tonsilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081212 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005451.md b/md/UBERON/51/UBERON_0005451.md index 1a889b9006..cd383022f6 100644 --- a/md/UBERON/51/UBERON_0005451.md +++ b/md/UBERON/51/UBERON_0005451.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005451 * *Label* = segment of manus - * *Definition* = A segment of autopod that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A segment of autopod that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24945] - * regio manus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * segment of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24945] - * subdivision of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24945] - * hand region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24945] + * hand subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24945 ] + * regio manus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * segment of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24945 ] + * subdivision of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24945 ] + * hand region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24945 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [segment of autopod](../../UBERON/39/UBERON_0012139.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005651.md b/md/UBERON/51/UBERON_0005651.md index b2da5c2d33..619ecb207a 100644 --- a/md/UBERON/51/UBERON_0005651.md +++ b/md/UBERON/51/UBERON_0005651.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005651 * *Label* = pedal digit 4 epithelium - * *Definition* = An epithelium that is part of a pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 4 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 4 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 4 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0005751.md b/md/UBERON/51/UBERON_0005751.md index baf496e50e..0a26d3c403 100644 --- a/md/UBERON/51/UBERON_0005751.md +++ b/md/UBERON/51/UBERON_0005751.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005751 * *Label* = visceral layer of glomerular capsule - * *Definition* = The inner, or visceral, layer of the renal glomerular capsule, overlying the capillaries, composed of podocytes, and separated from the outer, or parietal, layer by the capsular (Bowman's) space[BTO]. Lies just above the thickened glomerular basement membrane and is made of podocytes. Beneath the visceral layer lie the glomerular capillaries[WP]. inner layer of the glomerular capsule surrounding the capillary endothelial cells and composed of highly specialized epithelial cells (podocytes) that are separated by filtration slits; the visceral layer is separated from the outer parietal layer by the urinary space (also known as the Bowman's or capsular space)[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001515[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] + * *Definition* = The inner, or visceral, layer of the renal glomerular capsule, overlying the capillaries, composed of podocytes, and separated from the outer, or parietal, layer by the capsular (Bowman's) space[BTO]. Lies just above the thickened glomerular basement membrane and is made of podocytes. Beneath the visceral layer lie the glomerular capillaries[WP]. inner layer of the glomerular capsule surrounding the capillary endothelial cells and composed of highly specialized epithelial cells (podocytes) that are separated by filtration slits; the visceral layer is separated from the outer parietal layer by the urinary space (also known as the Bowman's or capsular space)[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001515, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] * *Comment* = TODO - check - the BTO class 'glomerular epithelium' is the visceral layer. But GO uses 'glomerular epithelium' as the mereological sum of P+V layers ## Synonyms - * Bowman's visceral epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] - * glomerular capsule visceral layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] - * inner epithelial layer of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] - * podocyte layer of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] - * visceral epithelium of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] - * visceral epithelium of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] - * visceral layer of Bowman's capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] - * visceral layer of glomerular capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011497] + * Bowman's visceral epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] + * glomerular capsule visceral layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] + * inner epithelial layer of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] + * podocyte layer of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] + * visceral epithelium of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] + * visceral epithelium of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] + * visceral layer of Bowman's capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] + * visceral layer of glomerular capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011497 ] ## Cross-references * FMA:74273 * SCTID:244093000 - * UMLS:C0227644 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Visceral_Layer_of_Bowman_s_Capsule] + * UMLS:C0227644 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Visceral_Layer_of_Bowman_s_Capsule ] * ncithesaurus:Visceral_Layer_of_Bowman_s_Capsule ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006051.md b/md/UBERON/51/UBERON_0006051.md index 41901ed9b0..19b89cc3a9 100644 --- a/md/UBERON/51/UBERON_0006051.md +++ b/md/UBERON/51/UBERON_0006051.md @@ -29,8 +29,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006251.md b/md/UBERON/51/UBERON_0006251.md index 59f39e225c..13d62c7c98 100644 --- a/md/UBERON/51/UBERON_0006251.md +++ b/md/UBERON/51/UBERON_0006251.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006351.md b/md/UBERON/51/UBERON_0006351.md index ff80683c0f..42bb3802cd 100644 --- a/md/UBERON/51/UBERON_0006351.md +++ b/md/UBERON/51/UBERON_0006351.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006351 * *Label* = principal vein of forelimb - * *Definition* = A prinicipal vein of limb that is part of a forelimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A prinicipal vein of limb that is part of a forelimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [prinicipal vein of limb](../../UBERON/43/UBERON_0006443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006451.md b/md/UBERON/51/UBERON_0006451.md index 9129a55b2e..2a288ddf67 100644 --- a/md/UBERON/51/UBERON_0006451.md +++ b/md/UBERON/51/UBERON_0006451.md @@ -6,15 +6,15 @@ ## Synonyms - * L4 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71190] - * L4 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1352] + * L4 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71190 ] + * L4 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1352 ] ## Cross-references * FMA:71190 * NIF_GrossAnatomy:birnlex_1352 * SCTID:278779002 - * UMLS:C0457875 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1352] + * UMLS:C0457875 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1352 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006651.md b/md/UBERON/51/UBERON_0006651.md index d42331fda3..763360f8df 100644 --- a/md/UBERON/51/UBERON_0006651.md +++ b/md/UBERON/51/UBERON_0006651.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006651 * *Label* = appendix testis - * *Definition* = The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_testis] + * *Definition* = The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_testis ] * *Comment* = Editor notes: the label hydatid of morgagni is ambiguous w.r.t male vs female. The ncita structure 'hydatic of morgani[sic]' is male and thus belongs here. See also 'vesicular appendage of epoophoron' ## Synonyms - * appendix of testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19846] - * testis appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19846] - * hydatid of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/Hydatid+of+Morgagni] + * appendix of testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19846 ] + * testis appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19846 ] + * hydatid of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/Hydatid+of+Morgagni ] * hydatid of Morgani - * hydatid of morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18696] - * appendices testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_testis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * appendix of the testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_testis] - * appendix testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_testis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * appendix testis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendix_of_testis] - * appendix vesiculosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18696] + * hydatid of morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18696 ] + * appendices testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_testis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * appendix of the testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_testis ] + * appendix testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_testis ] + * appendix testis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendix_of_testis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * appendix vesiculosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18696 ] ## Cross-references * EMAPA:19087 * FMA:19846 * SCTID:279601003 - * UMLS:C1512521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hydatid_of_Morgani] + * UMLS:C1512521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hydatid_of_Morgani ] * Wikipedia:Appendix_of_testis * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png * ncithesaurus:Hydatid_of_Morgani @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a cystlike remnant of the mllerian duct on the upper end of the testis; corresponding female structure: one of the small pedunculated structures attached to the uterine tubes near their fimbriated end; remnants of the mesonephric ducts[http://medical-dictionary.thefreedictionary.com/]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006851.md b/md/UBERON/51/UBERON_0006851.md index cfa9cd14ac..9ab88b5047 100644 --- a/md/UBERON/51/UBERON_0006851.md +++ b/md/UBERON/51/UBERON_0006851.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006851 * *Label* = renal cortex peritubular capillary - * *Definition* = A peritubular capillary that is part of a cortex of kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A peritubular capillary that is part of a cortex of kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney cortex peritubular capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002590] + * kidney cortex peritubular capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002590 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [peritubular capillary](../../UBERON/72/UBERON_0005272.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0006951.md b/md/UBERON/51/UBERON_0006951.md index 2182f4b270..0c484c9c68 100644 --- a/md/UBERON/51/UBERON_0006951.md +++ b/md/UBERON/51/UBERON_0006951.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006951 * *Label* = inner dental epithelium - * *Definition* = Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the odontogenic papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inner_enamel_epithelium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the odontogenic papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inner_enamel_epithelium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * inner enamel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005136] - * epithelium enameleum internum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inner_enamel_epithelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal enamel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003463] + * inner enamel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005136 ] + * epithelium enameleum internum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inner_enamel_epithelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal enamel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003463 ] ## Cross-references * BTO:0003463 * TAO:0005136 - * UMLS:C1512780 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Enamel_Epithelium] + * UMLS:C1512780 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Enamel_Epithelium ] * Wikipedia:Inner_enamel_epithelium * ZFA:0005136 * http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Inner layer of the dental organ, composed of ameloblasts.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0007151.md b/md/UBERON/51/UBERON_0007151.md index 4b49d8374f..42950ec42f 100644 --- a/md/UBERON/51/UBERON_0007151.md +++ b/md/UBERON/51/UBERON_0007151.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007151 * *Label* = mitral valve leaflet - * *Definition* = Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7241] + * *Definition* = Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7241 ] ## Synonyms - * leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7241] - * mitral valve leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7241] - * mitral valvular leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7241] - * mitral valve leaflets [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000822[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7241 ] + * mitral valve leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7241 ] + * mitral valvular leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7241 ] + * mitral valve leaflets [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000822, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac valve leaflet](../../UBERON/41/UBERON_0011741.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mitral valve](../../UBERON/35/UBERON_0002135.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0007251.md b/md/UBERON/51/UBERON_0007251.md index a8481ef3d1..022b6ff267 100644 --- a/md/UBERON/51/UBERON_0007251.md +++ b/md/UBERON/51/UBERON_0007251.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007251 * *Label* = preoptic nucleus - * *Definition* = A nucleus of brain that is part of a preoptic area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a preoptic area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Parieto-occipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PO] - * posterior complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PO] + * Parieto-occipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PO ] + * posterior complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PO ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [preoptic area](../../UBERON/28/UBERON_0001928.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0007351.md b/md/UBERON/51/UBERON_0007351.md index 2b2c622455..e68ad93d6d 100644 --- a/md/UBERON/51/UBERON_0007351.md +++ b/md/UBERON/51/UBERON_0007351.md @@ -6,7 +6,7 @@ ## Synonyms - * nucleus isthmoopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003411] + * nucleus isthmoopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003411 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0007651.md b/md/UBERON/51/UBERON_0007651.md index d754888742..342bd04b60 100644 --- a/md/UBERON/51/UBERON_0007651.md +++ b/md/UBERON/51/UBERON_0007651.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007651 * *Label* = anatomical junction - * *Definition* = Anatomical structure in which parts of two or more anatomical structures establish physical continuity with one another or intermingle their component parts. Examples: gastroesophageal junction, line alba, knee joint.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5898[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://code.google.com/p/caro2/issues/detail?id=15] + * *Definition* = Anatomical structure in which parts of two or more anatomical structures establish physical continuity with one another or intermingle their component parts. Examples: gastroesophageal junction, line alba, knee joint.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5898, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://code.google.com/p/caro2/issues/detail?id=15 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0008251.md b/md/UBERON/51/UBERON_0008251.md index d5d81e570f..e916226da2 100644 --- a/md/UBERON/51/UBERON_0008251.md +++ b/md/UBERON/51/UBERON_0008251.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008251 * *Label* = water vascular system - * *Definition* = The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Water_vascular_system] + * *Definition* = The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Water_vascular_system ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0008851.md b/md/UBERON/51/UBERON_0008851.md index ddbcaef9b4..9f92e25f75 100644 --- a/md/UBERON/51/UBERON_0008851.md +++ b/md/UBERON/51/UBERON_0008851.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008851 * *Label* = ectoplacental cavity - * *Definition* = closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011207[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] + * *Definition* = closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011207, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity ] ## Synonyms - * epamniotic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] - * epamniotic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011207] + * epamniotic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity ] + * epamniotic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011207 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [ectoplacental cone](../../UBERON/64/UBERON_0004364.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0008951.md b/md/UBERON/51/UBERON_0008951.md index ec5f847c9d..23f530e90f 100644 --- a/md/UBERON/51/UBERON_0008951.md +++ b/md/UBERON/51/UBERON_0008951.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008951 * *Label* = left lung lobe - * *Definition* = A lobe of lung that is part of a left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobe of lung that is part of a left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: 1 in mice, divided into 2 in human by a single interlobar fissure, the oblqiue fissure [ISBN-10:0123813611] ## Synonyms @@ -15,7 +15,7 @@ * EHDAA:2981 * SCTID:272655003 - * UMLS:C1285107 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lobe_of_the_Left_Lung] + * UMLS:C1285107 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lobe_of_the_Left_Lung ] * ncithesaurus:Lobe_of_the_Left_Lung ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobe of lung](../../UBERON/01/UBERON_0000101.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009051.md b/md/UBERON/51/UBERON_0009051.md index 084368168a..6cc5255ca1 100644 --- a/md/UBERON/51/UBERON_0009051.md +++ b/md/UBERON/51/UBERON_0009051.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009551.md b/md/UBERON/51/UBERON_0009551.md index 0535a9f0aa..21d3716a65 100644 --- a/md/UBERON/51/UBERON_0009551.md +++ b/md/UBERON/51/UBERON_0009551.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009551 * *Label* = distal segment of digit - * *Definition* = A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/nature10346] + * *Definition* = A segment of a digit containing the distal phalanx, and overlapping the distal interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/nature10346 ] * *Comment* = Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 23?months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults ## Synonyms - * digit tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * distal digit segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tip of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * digit tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * distal digit segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tip of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -23,19 +23,20 @@ * [limb segment](../../UBERON/29/UBERON_0002529.md) * [part_of](../../BFO/50/BFO_0000050.md) some [digit](../../UBERON/44/UBERON_0002544.md) * [has_part](../../BFO/51/BFO_0000051.md) some [distal phalanx](../../UBERON/00/UBERON_0004300.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [limb segment](../../UBERON/29/UBERON_0002529.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit](../../UBERON/44/UBERON_0002544.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009651.md b/md/UBERON/51/UBERON_0009651.md index e3dc6497fa..20c130e194 100644 --- a/md/UBERON/51/UBERON_0009651.md +++ b/md/UBERON/51/UBERON_0009651.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009651 * *Label* = nephron tubule basement membrane - * *Definition* = A basement membrane that is part of a nephron tubule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basement membrane that is part of a nephron tubule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney tubule basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001680] - * renal tubule basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001680] + * kidney tubule basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001680 ] + * renal tubule basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001680 ] ## Cross-references * MA:0001680 - * UMLS:C1709901 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Tubule_Basement_Membrane] + * UMLS:C1709901 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Tubule_Basement_Membrane ] * ncithesaurus:Renal_Tubule_Basement_Membrane ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basement membrane of epithelium](../../UBERON/69/UBERON_0005769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nephron tubule](../../UBERON/31/UBERON_0001231.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009751.md b/md/UBERON/51/UBERON_0009751.md index a727362dd1..59bbba770d 100644 --- a/md/UBERON/51/UBERON_0009751.md +++ b/md/UBERON/51/UBERON_0009751.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009751 * *Label* = cardiac mesenchyme - * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011264] + * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011264 ] * *Comment* = Editor note: decide whether to merge with cardiac mesoderm. In EHDAA2 this lasts CS12->unbounded, includes mesenchyme of individual components as parts ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009851.md b/md/UBERON/51/UBERON_0009851.md index 334e065894..33d833bd6f 100644 --- a/md/UBERON/51/UBERON_0009851.md +++ b/md/UBERON/51/UBERON_0009851.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009851 * *Label* = border of sublaminar layers S4 and S5 - * *Definition* = The intersection of sublaminar layers S4 and S5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = The intersection of sublaminar layers S4 and S5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -18,20 +18,21 @@ * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) * [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layers S4 or S5](../../UBERON/29/UBERON_0008929.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S4](../../UBERON/25/UBERON_0008925.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S5](../../UBERON/26/UBERON_0008926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0009951.md b/md/UBERON/51/UBERON_0009951.md index 2911197196..2e70d53423 100644 --- a/md/UBERON/51/UBERON_0009951.md +++ b/md/UBERON/51/UBERON_0009951.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009951 * *Label* = main olfactory bulb - * *Definition* = The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_bulb#Main_olfactory_bulb] + * *Definition* = The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_bulb#Main_olfactory_bulb ] * *Comment* = Note that the structure in many ontologies called simply 'olfactory bulb' may in fact belong here ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010051.md b/md/UBERON/51/UBERON_0010051.md index 4e9e66265f..7ccef96b19 100644 --- a/md/UBERON/51/UBERON_0010051.md +++ b/md/UBERON/51/UBERON_0010051.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010151.md b/md/UBERON/51/UBERON_0010151.md index 04a8a8e849..332af6d1cf 100644 --- a/md/UBERON/51/UBERON_0010151.md +++ b/md/UBERON/51/UBERON_0010151.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010151 * *Label* = duct of bulbourethral gland - * *Definition* = A duct that is part of a bulbo-urethral gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A duct that is part of a bulbo-urethral gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bulbourethral gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20091] - * duct of bulbo-urethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20091] - * ductus glandulae bulbourethralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bulbourethral gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20091 ] + * duct of bulbo-urethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20091 ] + * ductus glandulae bulbourethralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bulbo-urethral gland](../../UBERON/66/UBERON_0002366.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010251.md b/md/UBERON/51/UBERON_0010251.md index c291343f86..ac4875412f 100644 --- a/md/UBERON/51/UBERON_0010251.md +++ b/md/UBERON/51/UBERON_0010251.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010251 * *Label* = anterior meningeal artery - * *Definition* = a meningeal branch to the dura mater arising from the anterior ethmoidal artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery#Branches] + * *Definition* = a meningeal branch to the dura mater arising from the anterior ethmoidal artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery#Branches ] * *Comment* = Editor notes: this needs checking as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing ## Synonyms - * anterior meningeal branch of anterior ethmoidal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49993] - * a. ethmoidalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anterior ethmoid arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * anterior ethmoid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * anterior meningeal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * anterior meningeal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery] - * arteria ethmoidalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_ethmoidal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior meningeal branch of anterior ethmoidal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49993 ] + * a. ethmoidalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anterior ethmoid arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * anterior ethmoid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * anterior meningeal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * anterior meningeal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery ] + * arteria ethmoidalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_ethmoidal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:49993 * SCTID:369327009 - * UMLS:C0226187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Meningeal_Artery] + * UMLS:C0226187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Meningeal_Artery ] * Wikipedia:Anterior_ethmoidal_artery#Branches * http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png * ncithesaurus:Anterior_Meningeal_Artery @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010351.md b/md/UBERON/51/UBERON_0010351.md index 354bcdd0f6..ac5d4edf2c 100644 --- a/md/UBERON/51/UBERON_0010351.md +++ b/md/UBERON/51/UBERON_0010351.md @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [otic capsule endochondral element](../../UBERON/20/UBERON_0015020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010551.md b/md/UBERON/51/UBERON_0010551.md index 043fd6c66a..7057c06dd7 100644 --- a/md/UBERON/51/UBERON_0010551.md +++ b/md/UBERON/51/UBERON_0010551.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010551 * *Label* = pedal digit 5 metatarsal pre-cartilage condensation - * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal pre-cartilage condensation that is part of a pedal digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * toe 5 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002060] - * foot digit 5 metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 5 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * toe 5 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002060 ] + * foot digit 5 metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5 mesenchyme](../../UBERON/99/UBERON_0005699.md) and [pedal digit metatarsal pre-cartilage condensation](../../UBERON/87/UBERON_0010687.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010751.md b/md/UBERON/51/UBERON_0010751.md index 1d69fde64d..d9ffcec732 100644 --- a/md/UBERON/51/UBERON_0010751.md +++ b/md/UBERON/51/UBERON_0010751.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010851.md b/md/UBERON/51/UBERON_0010851.md index efc7c77b74..109132f153 100644 --- a/md/UBERON/51/UBERON_0010851.md +++ b/md/UBERON/51/UBERON_0010851.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010851 * *Label* = fibula cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a fibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a fibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fibulal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18154] - * fibular cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18154] + * fibulal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18154 ] + * fibular cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18154 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [fibula endochondral element](../../UBERON/13/UBERON_0015013.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0010951.md b/md/UBERON/51/UBERON_0010951.md index 4333458444..06d2ab3e03 100644 --- a/md/UBERON/51/UBERON_0010951.md +++ b/md/UBERON/51/UBERON_0010951.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010951 * *Label* = interscutular muscle - * *Definition* = a muscle that attaches to the base of the ear and to the middle of the skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19209956] + * *Definition* = a muscle that attaches to the base of the ear and to the middle of the skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19209956 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0011151.md b/md/UBERON/51/UBERON_0011151.md index c26c995485..bc6dcd3383 100644 --- a/md/UBERON/51/UBERON_0011151.md +++ b/md/UBERON/51/UBERON_0011151.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011151 * *Label* = jaw depressor muscle - * *Definition* = A muscle whose action is to depress the lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436] + * *Definition* = A muscle whose action is to depress the lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436 ] * *Comment* = Taxon notes: In amphibians, "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw." [AAO:0010655]. "The protractor hyoideus muscle in teleosts is commonly, albeit mistakenly, referred to as the geniohyoideus muscle, which is involved in the coracomandibularis coupling. According to Edgeworth (1935) and Winterbottom (1974), the protractor hyoideus is composed of a fusion of the intermandibularis posterior and the interhyoideus muscles which resulted in the protractor hyoideus which spans the hyoid and mandible. The intermandibularis spans the mandible while the closely apposed interhyoideus spans the hyoid in other fishes. Furthermore, they concluded that any muscle that is homologous to the geniohyoideus (coracomandibularis coupling) in other lower vertebrates has been lost in teleosts, as well as gars. However, the protractor hyoideus muscle is functionally analogous to the coracomandibularis coupling of other vertebrates and so we use it in our discussion to show the phylogenetically broad roles of these couplings in jaw mechanics."[doi:10.1006/bijl.2000.0436] ## Synonyms - * branchiomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * coracomandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * depressor gnathalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * geniohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000612[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * geniohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * geniothoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * protractor hyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000612[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * protractor hyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1006/bijl.2000.0436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * branchiomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * coracomandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * depressor gnathalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * geniohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000612, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * geniohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * geniothoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * protractor hyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000612, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * protractor hyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1006/bijl.2000.0436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscle that pulls the hyoid apparatus forward and depresses the lower jaw.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0011251.md b/md/UBERON/51/UBERON_0011251.md index e31c796804..d9ff050f5a 100644 --- a/md/UBERON/51/UBERON_0011251.md +++ b/md/UBERON/51/UBERON_0011251.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011251 * *Label* = levator claviculae muscle - * *Definition* = A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] + * *Definition* = A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] * *Comment* = Taxon notes: The levator claviculae is an infrequently recognized anatomical variant in humans, distinguished from, for example, cervical adenopathy or a thrombosed vein, but a normal muscle in lower mammals and anthropoids. In humans, when present, it often appears unilaterally, most commonly on the left side, or bilaterally.[WP] ## Synonyms - * cleidocervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] - * cleidocervicalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] - * levator claviculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] - * musculus levator claviculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * omocervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] - * tracheloacromial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_claviculae_muscle] + * cleidocervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] + * cleidocervicalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] + * levator claviculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] + * musculus levator claviculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * omocervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] + * tracheloacromial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_claviculae_muscle ] * pars cervicalis ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cleidocervicalis is one of two muscles, which make up the cleidocephalic component of the complex brachiocephalic muscle. It is a thin triangular muscle which has a broad origin on the median raphe of the mid dorsal aspect of the neck. The muscle is bounded caudally by the trapezius and cranially by the occipital component of the sternocephalicus . The cleidocervicalis tapers as it passes ventrally across the side of the neck to insert into the clavicular tendon. It is innervated by the accessory nerve. The brachiocephalic complex advances the limb, extends the shoulder joint and fixes the neck. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0011651.md b/md/UBERON/51/UBERON_0011651.md index 46eeb228a2..1a225bc29b 100644 --- a/md/UBERON/51/UBERON_0011651.md +++ b/md/UBERON/51/UBERON_0011651.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011651 * *Label* = ventral head of rib - * *Definition* = Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000723] + * *Definition* = Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000723 ] * *Comment* = Taxon notes: Ribs of primitive tetrapods are bicipital (having two heads)[Kardong]. ## Synonyms * capitulum of costa - * capitulum of rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000723] + * capitulum of rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000723 ] * costal capitulum * capitulum @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [parapophysis](../../UBERON/09/UBERON_0003109.md) and [head of rib](../../UBERON/30/UBERON_0002230.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0011951.md b/md/UBERON/51/UBERON_0011951.md index 036167a3b2..ea5217f942 100644 --- a/md/UBERON/51/UBERON_0011951.md +++ b/md/UBERON/51/UBERON_0011951.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011951 * *Label* = prostate luminal epithelium - * *Definition* = A luminal layer of epithelium that is part of a prostate gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A luminal layer of epithelium that is part of a prostate gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * subdivision of luminal layer of epithelium of prostatic gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74262] + * subdivision of luminal layer of epithelium of prostatic gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74262 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [luminal layer of epithelium](../../UBERON/45/UBERON_0011945.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0012151.md b/md/UBERON/51/UBERON_0012151.md index cbb2f285f0..df8fd9c85e 100644 --- a/md/UBERON/51/UBERON_0012151.md +++ b/md/UBERON/51/UBERON_0012151.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012151 * *Label* = skeleton of manual digitopodium - * *Definition* = A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A subdivision of the manus skeleton consisting of both manual acropodial skeleton and metacarpal skeleton, but excluding the carpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Terminology notes: some sources call this the acropodium. see http://purl.obolibrary.org/obo/uberon/references/reference_0000019 ## Synonyms - * hand proper skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79180] + * hand proper skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79180 ] * manual digitopodium - * skeleton of hand proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79180] + * skeleton of hand proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79180 ] ## Cross-references @@ -28,16 +28,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [skeleton of digitopodium](../../UBERON/50/UBERON_0012150.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012151 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/51/UBERON_0012251.md b/md/UBERON/51/UBERON_0012251.md index 4dd0c6778e..8b047b40ce 100644 --- a/md/UBERON/51/UBERON_0012251.md +++ b/md/UBERON/51/UBERON_0012251.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ectocervix](../../UBERON/49/UBERON_0012249.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012251 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0012351.md b/md/UBERON/51/UBERON_0012351.md index 4ad6072dd0..f41d7d81e5 100644 --- a/md/UBERON/51/UBERON_0012351.md +++ b/md/UBERON/51/UBERON_0012351.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [urachus](../../UBERON/68/UBERON_0002068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012351 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0012451.md b/md/UBERON/51/UBERON_0012451.md index aa63b1b289..863b79f3c8 100644 --- a/md/UBERON/51/UBERON_0012451.md +++ b/md/UBERON/51/UBERON_0012451.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012451 * *Label* = sensory receptor - * *Definition* = a sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sensory_receptor] + * *Definition* = a sensory nerve ending that responds to a stimulus in the internal or external environment of an organism. In response to stimuli the sensory receptor initiates sensory transduction by creating graded potentials or action potentials in the same cell or in an adjacent one.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sensory_receptor ] ## Synonyms - * peripheral ending of sensory neuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84650] - * sensory nerve ending [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.550.700] + * peripheral ending of sensory neuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84650 ] + * sensory nerve ending [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.550.700 ] ## Cross-references * FMA:84650 * MESH:A08.800.550.700 * SCTID:70402007 - * UMLS:C0682664 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Somatosensory_Receptor] + * UMLS:C0682664 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Somatosensory_Receptor ] * Wikipedia:Sensory_receptor * ncithesaurus:Somatosensory_Receptor @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0012651.md b/md/UBERON/51/UBERON_0012651.md index 68e1035cfa..0a7b838207 100644 --- a/md/UBERON/51/UBERON_0012651.md +++ b/md/UBERON/51/UBERON_0012651.md @@ -6,7 +6,7 @@ ## Synonyms - * gastroduodenal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005415] + * gastroduodenal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005415 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastroduodenal junction](../../UBERON/50/UBERON_0012650.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012651 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0013151.md b/md/UBERON/51/UBERON_0013151.md index 35523d2e6f..769c917a23 100644 --- a/md/UBERON/51/UBERON_0013151.md +++ b/md/UBERON/51/UBERON_0013151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013151 * *Label* = choroidal artery - * *Definition* = One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Choroidal_Artery] + * *Definition* = One of two arteries (anterior and posterior choroidal artery) that supply blood to the choroid plexus, optic tract, hippocampus, globus pallidus, and other various brain regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Choroidal_Artery ] ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references * SCTID:244210009 - * UMLS:C0226164 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroidal_Artery] + * UMLS:C0226164 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroidal_Artery ] * ncithesaurus:Choroidal_Artery ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [choroid plexus](../../UBERON/86/UBERON_0001886.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013151 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0013551.md b/md/UBERON/51/UBERON_0013551.md index 8c6af80497..071cd930e1 100644 --- a/md/UBERON/51/UBERON_0013551.md +++ b/md/UBERON/51/UBERON_0013551.md @@ -6,24 +6,24 @@ ## Synonyms - * B09-20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1751] - * Brodmann (1909) area 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1751] - * Brodmann area 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68617] - * Brodmann area 20, inferior temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1751] - * Inferior temporal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68617] - * area 20 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68617] - * area 20 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1751] - * area temporalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1751] - * B09-20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1751[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 20 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1025] - * brodmann's area 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1025] + * B09-20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1751 ] + * Brodmann (1909) area 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1751 ] + * Brodmann area 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68617 ] + * Brodmann area 20, inferior temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1751 ] + * Inferior temporal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68617 ] + * area 20 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68617 ] + * area 20 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1751 ] + * area temporalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1751 ] + * B09-20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1751, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 20 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1025 ] + * brodmann's area 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1025 ] ## Cross-references * FMA:68617 * NIF_GrossAnatomy:birnlex_1751 - * NeuroNames:1025 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1751] - * UMLS:C1272538 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1751] + * NeuroNames:1025 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1751 ] + * UMLS:C1272538 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1751 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0013751.md b/md/UBERON/51/UBERON_0013751.md index a815b8c610..65670236a3 100644 --- a/md/UBERON/51/UBERON_0013751.md +++ b/md/UBERON/51/UBERON_0013751.md @@ -6,7 +6,7 @@ ## Synonyms - * radial metaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33789] + * radial metaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33789 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metaphysis](../../UBERON/38/UBERON_0001438.md) and [part_of](../../BFO/50/BFO_0000050.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0014451.md b/md/UBERON/51/UBERON_0014451.md index 973af2450e..d0a640ef23 100644 --- a/md/UBERON/51/UBERON_0014451.md +++ b/md/UBERON/51/UBERON_0014451.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014451 * *Label* = tongue taste bud - * *Definition* = A taste bud that is located on the tongue, situated on a gustatory papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A taste bud that is located on the tongue, situated on a gustatory papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Editor notes: sibling classes have yet to be added ## Synonyms * gustatory papilla taste bud - * gustatory papillae taste bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006260] + * gustatory papillae taste bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006260 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [taste bud](../../UBERON/27/UBERON_0001727.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014451 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0014551.md b/md/UBERON/51/UBERON_0014551.md index 4a5e82e01a..08978c613b 100644 --- a/md/UBERON/51/UBERON_0014551.md +++ b/md/UBERON/51/UBERON_0014551.md @@ -6,8 +6,8 @@ ## Synonyms - * CA2 part of stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4115[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA2 stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4115] + * CA2 part of stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4115, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA2 stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4115 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum oriens](../../UBERON/71/UBERON_0005371.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014551 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0014751.md b/md/UBERON/51/UBERON_0014751.md index 3804899da4..23bddb4538 100644 --- a/md/UBERON/51/UBERON_0014751.md +++ b/md/UBERON/51/UBERON_0014751.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014751 * *Label* = P1 area of pallium (Myxiniformes) - * *Definition* = Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014751 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0014851.md b/md/UBERON/51/UBERON_0014851.md index eb1fc38e54..39a1c4cb15 100644 --- a/md/UBERON/51/UBERON_0014851.md +++ b/md/UBERON/51/UBERON_0014851.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014851 * *Label* = chorda tendinea of left ventricle - * *Definition* = Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9349] + * *Definition* = Chorda tendinea which is attached to the leaflet of mitral valve and is continuous with the endocardium of papillary muscle of left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9349 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [chordae tendineae](../../UBERON/94/UBERON_0005994.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014851 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0014951.md b/md/UBERON/51/UBERON_0014951.md index 469a4eabf5..d7c1d235ae 100644 --- a/md/UBERON/51/UBERON_0014951.md +++ b/md/UBERON/51/UBERON_0014951.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014951 * *Label* = proisocortex - * *Definition* = The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BRAINSPAN:BRAINSPAN] + * *Definition* = The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BRAINSPAN:BRAINSPAN ] ## Synonyms - * intermediate belt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] - * iuxtallocorteccia@it [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] - * juxtallocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] - * periisocortical belt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] - * proisocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] - * proisocortical belt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2311] + * intermediate belt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] + * iuxtallocorteccia@it [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] + * juxtallocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] + * periisocortical belt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] + * proisocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] + * proisocortical belt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2311 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014951 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_0015051.md b/md/UBERON/51/UBERON_0015051.md index 4e8449e966..8bdcc2f686 100644 --- a/md/UBERON/51/UBERON_0015051.md +++ b/md/UBERON/51/UBERON_0015051.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015051 * *Label* = exoccipital endochondral element - * *Definition* = A exoccipital bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A exoccipital bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * exoccipital element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * exoccipital skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * exoccipital element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * exoccipital skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [exoccipital bone](../../UBERON/93/UBERON_0001693.md)or[exoccipital cartilage element](../../UBERON/52/UBERON_0010752.md)or[exoccipital pre-cartilage condensation](../../UBERON/28/UBERON_0006228.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015051 + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000251.md b/md/UBERON/51/UBERON_2000251.md index 04786118e6..bc17b96090 100644 --- a/md/UBERON/51/UBERON_2000251.md +++ b/md/UBERON/51/UBERON_2000251.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000251 * *Label* = adipose fin - * *Definition* = A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000451.md b/md/UBERON/51/UBERON_2000451.md index 2a6bc9cb3c..6f51a0724f 100644 --- a/md/UBERON/51/UBERON_2000451.md +++ b/md/UBERON/51/UBERON_2000451.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000551.md b/md/UBERON/51/UBERON_2000551.md index e44f992065..ef13e7e8fe 100644 --- a/md/UBERON/51/UBERON_2000551.md +++ b/md/UBERON/51/UBERON_2000551.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000651.md b/md/UBERON/51/UBERON_2000651.md index 08badc451c..1e053bc2db 100644 --- a/md/UBERON/51/UBERON_2000651.md +++ b/md/UBERON/51/UBERON_2000651.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000751.md b/md/UBERON/51/UBERON_2000751.md index 4a9d180868..6f63eb3d63 100644 --- a/md/UBERON/51/UBERON_2000751.md +++ b/md/UBERON/51/UBERON_2000751.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000751 * *Label* = epaxial region somite 8 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2000851.md b/md/UBERON/51/UBERON_2000851.md index f25bb9b84e..221cb289a2 100644 --- a/md/UBERON/51/UBERON_2000851.md +++ b/md/UBERON/51/UBERON_2000851.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000851 * *Label* = somite 12 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 12 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001051.md b/md/UBERON/51/UBERON_2001051.md index f6975b2059..e75d8d5dbe 100644 --- a/md/UBERON/51/UBERON_2001051.md +++ b/md/UBERON/51/UBERON_2001051.md @@ -6,7 +6,7 @@ ## Synonyms - * CaDI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001051] + * CaDI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001051 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001151.md b/md/UBERON/51/UBERON_2001151.md index 5dd33eb56d..2e2190bd97 100644 --- a/md/UBERON/51/UBERON_2001151.md +++ b/md/UBERON/51/UBERON_2001151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001151 * *Label* = tooth 4MD - * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 4 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001251.md b/md/UBERON/51/UBERON_2001251.md index 4ad8f2ccaf..9edd0f6b68 100644 --- a/md/UBERON/51/UBERON_2001251.md +++ b/md/UBERON/51/UBERON_2001251.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001251 * *Label* = pharyngobranchial 4 cartilage - * *Definition* = Most posterior pharyngobranchial cartilage, located medial to the epibranchials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Most posterior pharyngobranchial cartilage, located medial to the epibranchials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * infrapharyngobranchial 4 cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001251] - * infrapharyngobranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001251[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * infrapharyngobranchial 4 cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001251 ] + * infrapharyngobranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001251, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001551.md b/md/UBERON/51/UBERON_2001551.md index a60e93794b..33a5ac931d 100644 --- a/md/UBERON/51/UBERON_2001551.md +++ b/md/UBERON/51/UBERON_2001551.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001551 * *Label* = obsolete pectoral fin lepidotrichium - * *Definition* = Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. ## Synonyms - * pectoral fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001551[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * pectoral fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001551] + * pectoral fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001551, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * pectoral fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001551 ] ## Cross-references @@ -31,8 +31,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000175 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/51/UBERON_2001651.md b/md/UBERON/51/UBERON_2001651.md index 8eec5db279..ae9fc51aee 100644 --- a/md/UBERON/51/UBERON_2001651.md +++ b/md/UBERON/51/UBERON_2001651.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001651 * *Label* = pharyngobranchial 2 tooth - * *Definition* = Tooth that is attached to the pharyngobranchial 2 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the pharyngobranchial 2 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001751.md b/md/UBERON/51/UBERON_2001751.md index a31b41aa90..2030cec3a3 100644 --- a/md/UBERON/51/UBERON_2001751.md +++ b/md/UBERON/51/UBERON_2001751.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001751 * *Label* = rib of vertebra 5 - * *Definition* = Rib that articulates with the parapophysis of the fifth centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the fifth centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * fifth pleural rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001751] + * fifth pleural rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001751 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2001951.md b/md/UBERON/51/UBERON_2001951.md index 3360d78583..ba2fd62845 100644 --- a/md/UBERON/51/UBERON_2001951.md +++ b/md/UBERON/51/UBERON_2001951.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001951 * *Label* = skin flap - * *Definition* = Surface structure that is a portion of skin that projects or hangs from the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a portion of skin that projects or hangs from the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2002051.md b/md/UBERON/51/UBERON_2002051.md index e50c39a457..7f4e54dd91 100644 --- a/md/UBERON/51/UBERON_2002051.md +++ b/md/UBERON/51/UBERON_2002051.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002051 * *Label* = circulus - * *Definition* = Fine ridge on surface of scale, often parallel to the circumference of scale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fine ridge on surface of scale, often parallel to the circumference of scale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * circuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002051[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * cr?tule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000149] + * circuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002051, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * cr?tule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000149 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2002151.md b/md/UBERON/51/UBERON_2002151.md index 78439b0801..a61c6144ad 100644 --- a/md/UBERON/51/UBERON_2002151.md +++ b/md/UBERON/51/UBERON_2002151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002151 * *Label* = vertebral element 11 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 10. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 10. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 11 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2002251.md b/md/UBERON/51/UBERON_2002251.md index bd6d7b3737..3b8e54a809 100644 --- a/md/UBERON/51/UBERON_2002251.md +++ b/md/UBERON/51/UBERON_2002251.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2005051.md b/md/UBERON/51/UBERON_2005051.md index 2098a72852..299fdde4d3 100644 --- a/md/UBERON/51/UBERON_2005051.md +++ b/md/UBERON/51/UBERON_2005051.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005051 * *Label* = communicating vessel palatocerebral artery - * *Definition* = Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * CMV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005051] - * communicating vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005051] + * CMV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005051 ] + * communicating vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005051 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_2005151.md b/md/UBERON/51/UBERON_2005151.md index 39bf47b06f..211952d065 100644 --- a/md/UBERON/51/UBERON_2005151.md +++ b/md/UBERON/51/UBERON_2005151.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005151 * *Label* = obsolete gold iridophore - * *Definition* = Iridescent iridophore containing gold reflecting platelets. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Iridescent iridophore containing gold reflecting platelets. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/51/UBERON_2007051.md b/md/UBERON/51/UBERON_2007051.md index cbc86dd873..fa5e39634c 100644 --- a/md/UBERON/51/UBERON_2007051.md +++ b/md/UBERON/51/UBERON_2007051.md @@ -6,7 +6,7 @@ ## Synonyms - * ventral interhyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007051[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ventral interhyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007051, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3000051.md b/md/UBERON/51/UBERON_3000051.md index 3f4b4de67d..d967dd09fb 100644 --- a/md/UBERON/51/UBERON_3000051.md +++ b/md/UBERON/51/UBERON_3000051.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3000451.md b/md/UBERON/51/UBERON_3000451.md index b6d2297f4b..01bec202a0 100644 --- a/md/UBERON/51/UBERON_3000451.md +++ b/md/UBERON/51/UBERON_3000451.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000451 * *Label* = posterior ramus of pterygoid - * *Definition* = In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3000651.md b/md/UBERON/51/UBERON_3000651.md index 61e40b0995..4e72d1af4a 100644 --- a/md/UBERON/51/UBERON_3000651.md +++ b/md/UBERON/51/UBERON_3000651.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000651 * *Label* = lamina anterior of maxilla - * *Definition* = Most anterior part of the maxilla, which is in contact with the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Most anterior part of the maxilla, which is in contact with the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3000951.md b/md/UBERON/51/UBERON_3000951.md index 5f4e051f60..8a24fb824b 100644 --- a/md/UBERON/51/UBERON_3000951.md +++ b/md/UBERON/51/UBERON_3000951.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000951 * *Label* = anterior radial - * *Definition* = Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3010451.md b/md/UBERON/51/UBERON_3010451.md index ee4c9c0cb2..45efdaa245 100644 --- a/md/UBERON/51/UBERON_3010451.md +++ b/md/UBERON/51/UBERON_3010451.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3010651.md b/md/UBERON/51/UBERON_3010651.md index 7a1fb26bec..b124484340 100644 --- a/md/UBERON/51/UBERON_3010651.md +++ b/md/UBERON/51/UBERON_3010651.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010651 * *Label* = levator bulbi - * *Definition* = One of the principal muscles used in swallowing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = One of the principal muscles used in swallowing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_3010751.md b/md/UBERON/51/UBERON_3010751.md index a40504ef2b..6bc0b0447b 100644 --- a/md/UBERON/51/UBERON_3010751.md +++ b/md/UBERON/51/UBERON_3010751.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010751 * *Label* = ramus muscularis of vagus nerve - * *Definition* = Motor nervous branch of the vagus innervating m. subarcualis rectus I. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:CAM] + * *Definition* = Motor nervous branch of the vagus innervating m. subarcualis rectus I. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:CAM ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_4000051.md b/md/UBERON/51/UBERON_4000051.md index b62baa1d1c..75c007deff 100644 --- a/md/UBERON/51/UBERON_4000051.md +++ b/md/UBERON/51/UBERON_4000051.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000051 * *Label* = lepidosteoid scale - * *Definition* = Multi-layer ganoid scale composed of ganoine and cellular bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Multi-layer ganoid scale composed of ganoine and cellular bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_4200051.md b/md/UBERON/51/UBERON_4200051.md index f33e2e4263..be85ee7c45 100644 --- a/md/UBERON/51/UBERON_4200051.md +++ b/md/UBERON/51/UBERON_4200051.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/51/UBERON_4200151.md b/md/UBERON/51/UBERON_4200151.md index 9ee779e5f6..e3b384fa2d 100644 --- a/md/UBERON/51/UBERON_4200151.md +++ b/md/UBERON/51/UBERON_4200151.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0000052.md b/md/UBERON/52/UBERON_0000052.md index 0db79ecc7f..808860e2fa 100644 --- a/md/UBERON/52/UBERON_0000052.md +++ b/md/UBERON/52/UBERON_0000052.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000052 * *Label* = fornix of brain - * *Definition* = A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_705] + * *Definition* = A C-shaped bundle of fibres (axons) in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. It is typically divided into the columns (crus), body, commissure and the pre-commissural and post-commissural fornix (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_705 ] ## Synonyms * brain fornix * cerebral fornix - * fornix of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83865] - * neuraxis fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83865] + * fornix of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83865 ] + * neuraxis fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83865 ] * fornix - * fornix cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:268[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fornix cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:268, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fornix hippocampus * hippocampus fornix ## Cross-references * BAMS:f - * FMA:61965 [[oboInOwl#notes](../../es/oboInOwl#notes.md) = + inferred] + * FMA:61965 [ [oboInOwl#notes](../../es/oboInOwl#notes.md) = inferred ] * FMA:83865 * MA:0002747 * NIF_GrossAnatomy:birnlex_705 - * NeuroNames:268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_705] + * NeuroNames:268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_705 ] * SCTID:279302004 - * UMLS:C0152334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_705] - * UMLS:C0458370 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Fornix] + * UMLS:C0152334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_705 ] + * UMLS:C0458370 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Fornix ] * Wikipedia:fornix_of_brain * http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png * ncithesaurus:Cerebral_Fornix @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0000152.md b/md/UBERON/52/UBERON_0000152.md index c5d0a91677..886938e936 100644 --- a/md/UBERON/52/UBERON_0000152.md +++ b/md/UBERON/52/UBERON_0000152.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000152 * *Label* = pelvic fin - * *Definition* = Paired fin located in the abdominal position of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000129] + * *Definition* = Paired fin located in the abdominal position of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000129 ] ## Synonyms - * ischioptrygie@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000129] - * nageoire pelvienne@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000129] + * ischioptrygie@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000129 ] + * nageoire pelvienne@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000129 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [paired fin](../../UBERON/34/UBERON_0002534.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired fin located in the abdominal position of the body.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired fin located in the abdominal position of the body.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0000952.md b/md/UBERON/52/UBERON_0000952.md index 22ba582fd1..7497c98890 100644 --- a/md/UBERON/52/UBERON_0000952.md +++ b/md/UBERON/52/UBERON_0000952.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011144 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011145 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000952 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_0001052.md b/md/UBERON/52/UBERON_0001052.md index faa427b0ee..94dc3b0935 100644 --- a/md/UBERON/52/UBERON_0001052.md +++ b/md/UBERON/52/UBERON_0001052.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001052 * *Label* = rectum - * *Definition* = The terminal portion of the intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectum] + * *Definition* = The terminal portion of the intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectum ] * *Comment* = Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html ## Synonyms * terminal portion of intestine - * intestinum rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001158] + * intestinum rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001158 ] * rectal sac * terminal portion of large intestine @@ -32,7 +32,7 @@ * MIAA:0000050 * OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA * SCTID:181261002 - * UMLS:C0034896 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rectum] + * UMLS:C0034896 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rectum ] * VHOG:0001751 * Wikipedia:Rectum * XAO:0000238 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = rectal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001152.md b/md/UBERON/52/UBERON_0001152.md index b7243dd569..1ab9953177 100644 --- a/md/UBERON/52/UBERON_0001152.md +++ b/md/UBERON/52/UBERON_0001152.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001152 * *Label* = cystic duct - * *Definition* = The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cystic_duct] + * *Definition* = The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cystic_duct ] ## Synonyms - * ductus cysticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cystic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus cysticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cystic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA * SCTID:245398005 * TAO:0005166 - * UMLS:C0010672 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cystic_Duct] + * UMLS:C0010672 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cystic_Duct ] * VHOG:0000213 * Wikipedia:Cystic_duct * ZFA:0005166 @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Duct that connects the gall bladder and the common bile duct.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The duct of the gallbladder which joins the common hepatic duct, thus forming the common biliary duct. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001252.md b/md/UBERON/52/UBERON_0001252.md index a3bae88678..2bd17844b9 100644 --- a/md/UBERON/52/UBERON_0001252.md +++ b/md/UBERON/52/UBERON_0001252.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001252 * *Label* = adventitia of ureter - * *Definition* = An adventitia that is part of a ureter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An adventitia that is part of a ureter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adventitia](../../UBERON/42/UBERON_0005742.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001352.md b/md/UBERON/52/UBERON_0001352.md index 6b438d88ef..fd5e5fed77 100644 --- a/md/UBERON/52/UBERON_0001352.md +++ b/md/UBERON/52/UBERON_0001352.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001352 * *Label* = external acoustic meatus - * *Definition* = A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_acoustic_meatus] + * *Definition* = A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_acoustic_meatus ] * *Comment* = AO notes: subdivision of head in FMA. Editor note: consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. Development notes: tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469] ## Synonyms * auditory canal - * ear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ear_canal] - * external acoustic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61734] + * ear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ear_canal ] + * external acoustic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61734 ] * external auditory canal - * external auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61734] - * auditory meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000460] + * external auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61734 ] + * auditory meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000460 ] * external auditory meatus ## Cross-references @@ -28,7 +28,7 @@ * MESH:A09.246.272.396 * OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA * SCTID:181178004 - * UMLS:C0013444 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Acoustic_Meatus] + * UMLS:C0013444 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Acoustic_Meatus ] * VHOG:0000977 * Wikipedia:External_acoustic_meatus * galen:ExternalAuditoryMeatus @@ -56,8 +56,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001452.md b/md/UBERON/52/UBERON_0001452.md index b0e8630ec9..672879d5ec 100644 --- a/md/UBERON/52/UBERON_0001452.md +++ b/md/UBERON/52/UBERON_0001452.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001452 * *Label* = distal tarsal bone 1 - * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005052[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_cuneiform_bone] + * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005052, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_cuneiform_bone ] ## Synonyms - * cuneiforme 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005052] - * distal tarsal 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005052] - * entocuneiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005052] - * first cuneiform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_cuneiform_bone] - * first cuneiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24518] - * medial cuneiform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24518] - * medial cuneiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24518] - * os cuneiforme mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tarsal 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000918] + * cuneiforme 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005052 ] + * distal tarsal 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005052 ] + * entocuneiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005052 ] + * first cuneiform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_cuneiform_bone ] + * first cuneiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24518 ] + * medial cuneiform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24518 ] + * medial cuneiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24518 ] + * os cuneiforme mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tarsal 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000918 ] * foot distal carpal bone 1 - * os cuneiform primum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os cuneiforme mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os cuneiforme primum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002360] - * ossa cuneiforme mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002360] + * os cuneiform primum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os cuneiforme mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os cuneiforme primum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002360 ] + * ossa cuneiforme mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002360 ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0001352 * OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA * SCTID:182116007 - * UMLS:C1512869 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot] + * UMLS:C1512869 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot ] * VSAO:0005052 * Wikipedia:Medial_cuneiform_bone * galen:MedialCuneiform @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone 1 endochondral element](../../UBERON/02/UBERON_0015102.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001552.md b/md/UBERON/52/UBERON_0001552.md index 7390a61a61..9a3c524c3b 100644 --- a/md/UBERON/52/UBERON_0001552.md +++ b/md/UBERON/52/UBERON_0001552.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001552 * *Label* = arcuate artery - * *Definition* = One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arcuate_artery_of_the_foot] + * *Definition* = One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arcuate_artery_of_the_foot ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * kidney arcuate artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011315] + * kidney arcuate artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011315 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001652.md b/md/UBERON/52/UBERON_0001652.md index 5364d6116b..851ef2349f 100644 --- a/md/UBERON/52/UBERON_0001652.md +++ b/md/UBERON/52/UBERON_0001652.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001652 * *Label* = left pulmonary artery - * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_pulmonary_artery] + * *Definition* = The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_pulmonary_artery ] * *Comment* = TODO - add class 'pulmonary artery tree organ' ## Synonyms * left main pulmonary artery * left pulmonary arterial tree - * arteria pulmonalis sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_pulmonary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria pulmonalis sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_pulmonary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50873 * MA:0002032 * SCTID:244234004 - * UMLS:C0923925 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Pulmonary_Artery] + * UMLS:C0923925 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Pulmonary_Artery ] * Wikipedia:Left_pulmonary_artery * galen:LeftPulmonaryArtery * http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001752.md b/md/UBERON/52/UBERON_0001752.md index 659cb35d06..41b8315faa 100644 --- a/md/UBERON/52/UBERON_0001752.md +++ b/md/UBERON/52/UBERON_0001752.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001752 * *Label* = enamel - * *Definition* = A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Enamel_organ[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Enamel_organ, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = AO notes: part_of tooth enamel organ in MA. Editor notes: current classification under substance of tooth may be turned into taxon GCI (e.g. sharks have enamel in dermal denticles) ## Synonyms * enamel of tooth - * enamel tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * enamel tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] * tooth enamel * enameloid @@ -21,7 +21,7 @@ * MA:0002543 * MESH:A14.254.900.255 * SCTID:362113009 - * UMLS:C0011350 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Enamel] + * UMLS:C0011350 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Enamel ] * VSAO:0000065 * Wikipedia:Enamel_organ * XAO:0004198 @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal tissue that consists of an avascular, noncollagenous, hypermineralized matrix that is deposited by ameloblasts that are excluded from the matrix. Enamel develops from organic pre-enamel tissue that is replaced by a largely inorganic matrix.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001852.md b/md/UBERON/52/UBERON_0001852.md index 16fee9ab66..3d8ed5515b 100644 --- a/md/UBERON/52/UBERON_0001852.md +++ b/md/UBERON/52/UBERON_0001852.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001852 * *Label* = endolymph - * *Definition* = Transudate contained within the membranous labyrinth.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61112[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymph] + * *Definition* = Transudate contained within the membranous labyrinth.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61112, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymph ] ## Synonyms * endolymphatic fluid - * Scarpa's fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymph] - * endolympha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymph[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * endolympha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymph] + * Scarpa's fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymph ] + * endolympha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymph ] + * endolympha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymph, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002528 * MESH:A12.207.571.324 * TAO:0005414 - * UMLS:C0014166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endolymph] + * UMLS:C0014166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endolymph ] * Wikipedia:Endolymph * ZFA:0005414 * http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [endolymphatic space](../../UBERON/78/UBERON_0011078.md) and [transudate](../../UBERON/79/UBERON_0007779.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = otolymphic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0001952.md b/md/UBERON/52/UBERON_0001952.md index e0370a71ce..d407279913 100644 --- a/md/UBERON/52/UBERON_0001952.md +++ b/md/UBERON/52/UBERON_0001952.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001952 * *Label* = epithelium of oropharynx - * *Definition* = An epithelium that is part of a oropharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a oropharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Histology/AO notes: Composition varies with species and time. This is classified as nonkeratinizing stratified squamous in FMA, unilaminar in EHDAA2; the majority of the pharyngeal epithelium is unilaminar in zebrafish ## Synonyms * oropharyngeal epithelium - * oropharynx epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oropharynx epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001605] + * oropharynx epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oropharynx epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001605 ] ## Cross-references * EHDAA2:0004083 * FMA:62453 * MA:0001605 - * UMLS:C1179158 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oropharynx_Epithelium] + * UMLS:C1179158 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oropharynx_Epithelium ] * ncithesaurus:Oropharynx_Epithelium ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oropharynx](../../UBERON/29/UBERON_0001729.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002052.md b/md/UBERON/52/UBERON_0002052.md index fe70244c4d..b204ceb70c 100644 --- a/md/UBERON/52/UBERON_0002052.md +++ b/md/UBERON/52/UBERON_0002052.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002052 * *Label* = capsule of adrenal gland - * *Definition* = A capsule that surrounds a adrenal gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A capsule that surrounds a adrenal gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -14,7 +14,7 @@ * FMA:69087 * MA:0000117 - * UMLS:C1181304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adrenal_Gland_Capsule] + * UMLS:C1181304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adrenal_Gland_Capsule ] * ncithesaurus:Adrenal_Gland_Capsule ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [adrenal gland](../../UBERON/69/UBERON_0002369.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002152.md b/md/UBERON/52/UBERON_0002152.md index a9bef98179..47d7618232 100644 --- a/md/UBERON/52/UBERON_0002152.md +++ b/md/UBERON/52/UBERON_0002152.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002152 * *Label* = middle cerebellar peduncle - * *Definition* = The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cerebellar_peduncle] + * *Definition* = The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cerebellar_peduncle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * brachium pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1529] - * brachium pontis (stem of middle cerebellar peduncle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:bp] - * crus cerebelli ad pontem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:620[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crus ponto-cerebellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:620[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mid-cerebellar peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:620] - * pedunculus cerebellaris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:620[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cerebellar_peduncle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris pontinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:620[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brachium pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1529 ] + * brachium pontis (stem of middle cerebellar peduncle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:bp ] + * crus cerebelli ad pontem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:620, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crus ponto-cerebellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:620, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mid-cerebellar peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:620 ] + * pedunculus cerebellaris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:620, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cerebellar_peduncle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris pontinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:620, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,9 +27,9 @@ * MA:0002745 * NIF_GrossAnatomy:birnlex_1529 * NIF_GrossAnatomy_RETIRED:birnlex_1699 - * NeuroNames:620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1529] + * NeuroNames:620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1529 ] * SCTID:279219000 - * UMLS:C0152392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1529] + * UMLS:C0152392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1529 ] * Wikipedia:Middle_cerebellar_peduncle * http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2b/Gray705.png/200px-Gray705.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002252.md b/md/UBERON/52/UBERON_0002252.md index 36ed362611..76f8715589 100644 --- a/md/UBERON/52/UBERON_0002252.md +++ b/md/UBERON/52/UBERON_0002252.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002252 * *Label* = splenius - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenius] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenius ] * *Comment* = Muscle of neck in NA ## Synonyms @@ -14,7 +14,7 @@ * FMA:77180 * MA:0002382 - * UMLS:C1185944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenius] + * UMLS:C1185944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenius ] * Wikipedia:Splenius * ncithesaurus:Splenius @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002352.md b/md/UBERON/52/UBERON_0002352.md index 5429251f25..2469291c39 100644 --- a/md/UBERON/52/UBERON_0002352.md +++ b/md/UBERON/52/UBERON_0002352.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002352 * *Label* = atrioventricular node - * *Definition* = Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrioventricular_node] + * *Definition* = Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrioventricular_node ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,8 +13,8 @@ * aschoff-tawara node * atrioventricular nodal muscle tissue * node of Tawara - * atriovetricular node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005070] - * nodus atrioventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrioventricular_node[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * atriovetricular node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005070 ] + * nodus atrioventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrioventricular_node, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g * SCTID:277688002 * TAO:0005070 - * UMLS:C0004247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Atrioventricular_Node] + * UMLS:C0004247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Atrioventricular_Node ] * VHOG:0001474 * Wikipedia:Atrioventricular_node * ZFA:0005070 @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus. Furthermore, within the ventricular component a compact outer myocardial component and an interiorly localized extensive trabecular component can be distinguished. The specific activation of the ventricle adds to its complexity as follows. The depolarizing impulse travels rapidly from the atrioventricular node toward the apex and then toward the conal region, achieving activation from apex to base.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002552.md b/md/UBERON/52/UBERON_0002552.md index ecbdfe3dc3..984ecab8da 100644 --- a/md/UBERON/52/UBERON_0002552.md +++ b/md/UBERON/52/UBERON_0002552.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002552 * *Label* = vestibulocerebellar tract - * *Definition* = The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibulocerebellar_tract] + * *Definition* = The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibulocerebellar_tract ] ## Synonyms - * vestibulocerebellar fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72508] - * tractus vestibulocerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:615[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vestibulocerebellar fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72508 ] + * tractus vestibulocerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:615, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:vcb * FMA:72508 * NIF_GrossAnatomy:birnlex_1009 - * NeuroNames:615 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1009] - * UMLS:C0175462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1009] + * NeuroNames:615 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1009 ] + * UMLS:C0175462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1009 ] * Wikipedia:Vestibulocerebellar_tract ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002652.md b/md/UBERON/52/UBERON_0002652.md index cfb05d3546..bc0c834f29 100644 --- a/md/UBERON/52/UBERON_0002652.md +++ b/md/UBERON/52/UBERON_0002652.md @@ -6,16 +6,16 @@ ## Synonyms - * PME [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1280[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * eminentia mediana posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:404[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * PME [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1280, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * eminentia mediana posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:404, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PME * FMA:74875 * NIF_GrossAnatomy:birnlex_1280 - * NeuroNames:404 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1280] - * UMLS:C0175323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1280] + * NeuroNames:404 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1280 ] + * UMLS:C0175323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1280 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002752.md b/md/UBERON/52/UBERON_0002752.md index c59f68a817..276b9555f5 100644 --- a/md/UBERON/52/UBERON_0002752.md +++ b/md/UBERON/52/UBERON_0002752.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002752 * *Label* = olivocerebellar tract - * *Definition* = The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raph, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivocerebellar_tract] + * *Definition* = The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raph, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivocerebellar_tract ] ## Synonyms - * fibrae olivocerebellares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:804[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olivocerebellar fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:804] - * t. olivocerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivocerebellar_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus olivocerebellaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:804[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fibrae olivocerebellares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:804, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olivocerebellar fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:804 ] + * t. olivocerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivocerebellar_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus olivocerebellaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:804, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,8 +18,8 @@ * BAMS:oct * FMA:72638 * NIF_GrossAnatomy:birnlex_1579 - * NeuroNames:804 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1579] - * UMLS:C0175557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1579] + * NeuroNames:804 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1579 ] + * UMLS:C0175557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1579 ] * Wikipedia:Olivocerebellar_tract * http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002852.md b/md/UBERON/52/UBERON_0002852.md index 73ca7e119e..9502331ff2 100644 --- a/md/UBERON/52/UBERON_0002852.md +++ b/md/UBERON/52/UBERON_0002852.md @@ -6,15 +6,15 @@ ## Synonyms - * ninth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6329] - * ninth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6329] + * ninth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6329 ] + * ninth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6329 ] ## Cross-references * EMAPA:25182 * FMA:6329 * NIF_GrossAnatomy:birnlex_2619 - * UMLS:C0501707 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2619] + * UMLS:C0501707 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2619 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0002952.md b/md/UBERON/52/UBERON_0002952.md index 6c1df987c6..0bf21ce863 100644 --- a/md/UBERON/52/UBERON_0002952.md +++ b/md/UBERON/52/UBERON_0002952.md @@ -7,17 +7,17 @@ ## Synonyms * commissure of held - * intermediate acoustic stria (held) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_768] + * intermediate acoustic stria (held) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_768 ] * intermediate acoustic stria of held - * striae acusticae intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:603[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * striae acusticae intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:603, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ias * FMA:72497 * NIF_GrossAnatomy:birnlex_768 - * NeuroNames:603 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_768] - * UMLS:C0175455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_768] + * NeuroNames:603 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_768 ] + * UMLS:C0175455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_768 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003052.md b/md/UBERON/52/UBERON_0003052.md index 95ba930030..c7a054aec6 100644 --- a/md/UBERON/52/UBERON_0003052.md +++ b/md/UBERON/52/UBERON_0003052.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003052 * *Label* = midbrain-hindbrain boundary - * *Definition* = The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021555] + * *Definition* = The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021555 ] * *Comment* = editor note: consider adding class for organizer. Consider adding separate class for isthmus as a structure ## Synonyms @@ -12,9 +12,9 @@ * mid-hindbrain boundary * mid-hindbrain junction * midbrain hindbrain boundary - * isthmo-cerebellar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000649] + * isthmo-cerebellar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000649 ] * isthmus - * isthmus/MHB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782] + * isthmus/MHB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782 ] ## Cross-references @@ -37,13 +37,13 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [anatomical junction](../../UBERON/51/UBERON_0007651.md) * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) * [develops from](../../RO/02/RO_0002202.md) some [midbrain hindbrain boundary neural plate](../../UBERON/15/UBERON_0009615.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lampreys also have an MHB [midbrain hindbrain boundary], expressing a similar repertoire of regulatory gene cognates as in gnathostomes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003152.md b/md/UBERON/52/UBERON_0003152.md index e2f2cfc138..20c3e880e1 100644 --- a/md/UBERON/52/UBERON_0003152.md +++ b/md/UBERON/52/UBERON_0003152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003152 * *Label* = obsolete phragma - * *Definition* = The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HAO:0000716] + * *Definition* = The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HAO:0000716 ] * *Comment* = arthropod specific groupings belong in separate ontology ## Synonyms @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004480 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000716 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003152 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_0003252.md b/md/UBERON/52/UBERON_0003252.md index ba4b79b3c0..898354f74f 100644 --- a/md/UBERON/52/UBERON_0003252.md +++ b/md/UBERON/52/UBERON_0003252.md @@ -3,19 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003252 * *Label* = thoracic rib cage - * *Definition* = Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeletal system that consists of all ribs in an organism connected to the sternum and the vertebrae. Some vertebrates have abdominal ribs (gastrialia), not connected to the vertebrate - these are not considered part of the rib case. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cavea thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7480[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rib cage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7480] - * thoracic cage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7480] - * cavea thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Human_rib_cage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavea thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7480, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rib cage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7480 ] + * thoracic cage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7480 ] + * cavea thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Human_rib_cage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:7480 * SCTID:361741004 + * Wikipedia:Human_rib_cage * Wikipedia:Rib_cage * galen:RibCage * http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png @@ -40,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that consists of more than one rib in an individual.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003352.md b/md/UBERON/52/UBERON_0003352.md index 838942d2f5..aa492e2e0d 100644 --- a/md/UBERON/52/UBERON_0003352.md +++ b/md/UBERON/52/UBERON_0003352.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003352 * *Label* = epithelium of midgut - * *Definition* = An epithelium that is part of a midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of midgut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midgut epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midgut epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005053] - * midgut epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of midgut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midgut epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midgut epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005053 ] + * midgut epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003452.md b/md/UBERON/52/UBERON_0003452.md index 98e8b8dd12..23f6664b96 100644 --- a/md/UBERON/52/UBERON_0003452.md +++ b/md/UBERON/52/UBERON_0003452.md @@ -3,53 +3,53 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003452 * *Label* = trabecula carnea cardiac muscle tissue - * *Definition* = A portion of cardiac muscle tissue that is part of a trabecula carnea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a trabecula carnea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle textus muscularis of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle textus muscularis of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium textus muscularis of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart textus muscularis of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of cardiac muscle of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of heart muscle of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of heart myocardium of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of muscle of heart of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle tissue of myocardium of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium muscle tissue of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium textus muscularis of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of cardiac muscle of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of heart muscle of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of heart myocardium of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of muscle of heart of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of trabecula carnea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea cardiac muscle muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea cardiac muscle textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea heart muscle muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea heart muscle textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea heart myocardium muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea heart myocardium textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle of heart muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle of heart textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle tissue of cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle tissue of heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle tissue of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle tissue of muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea muscle tissue of myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea myocardium muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea myocardium textus muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea textus muscularis of cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea textus muscularis of heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea textus muscularis of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea textus muscularis of muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula carnea textus muscularis of myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac muscle muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle textus muscularis of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle textus muscularis of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium textus muscularis of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart textus muscularis of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of cardiac muscle of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of heart muscle of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of heart myocardium of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of muscle of heart of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle tissue of myocardium of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium muscle tissue of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium textus muscularis of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of cardiac muscle of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of heart muscle of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of heart myocardium of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of muscle of heart of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of trabecula carnea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea cardiac muscle muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea cardiac muscle textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea heart muscle muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea heart muscle textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea heart myocardium muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea heart myocardium textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle of heart muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle of heart textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle tissue of cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle tissue of heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle tissue of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle tissue of muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea muscle tissue of myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea myocardium muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea myocardium textus muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea textus muscularis of cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea textus muscularis of heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea textus muscularis of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea textus muscularis of muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula carnea textus muscularis of myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -66,15 +66,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trabecula carnea](../../UBERON/11/UBERON_0002511.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003552.md b/md/UBERON/52/UBERON_0003552.md index 98bda1894b..ebabd3ac1b 100644 --- a/md/UBERON/52/UBERON_0003552.md +++ b/md/UBERON/52/UBERON_0003552.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003552 * *Label* = telencephalon pia mater - * *Definition* = A pia mater that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pia mater of neuraxis of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * telencephalon pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pia mater of neuraxis of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * telencephalon pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pia mater that is part of the telencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003652.md b/md/UBERON/52/UBERON_0003652.md index ff6b45c01e..a16e17b0cb 100644 --- a/md/UBERON/52/UBERON_0003652.md +++ b/md/UBERON/52/UBERON_0003652.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003652 * *Label* = metatarsal bone of digit 3 - * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 3[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Third_metatarsal_bone] + * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 3[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Third_metatarsal_bone ] ## Synonyms - * foot digit 3 metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foot digit 3 metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * metatarsal 3 - * metatarsal III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000927] - * metatarsal bone digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001371] - * metatarsal bone of foot digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24504] + * metatarsal III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000927 ] + * metatarsal bone digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001371 ] + * metatarsal bone of foot digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24504 ] * toe 3 metatarsal * toe 3 metatarsus - * hindlimb cannon bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hindlimb cannon bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:24504 * MA:0001371 * SCTID:182134006 - * UMLS:C1709001 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone_Digit_3] + * UMLS:C1709001 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone_Digit_3 ] * Wikipedia:Third_metatarsal_bone * ncithesaurus:Metatarsal_Bone_Digit_3 @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of pedal digit 3](../../UBERON/34/UBERON_0004334.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The third metatarsal bone articulates proximally, by means of a triangular smooth surface, with the third cuneiform; medially, by two facets, with the second metatarsal; and laterally, by a single facet, with the fourth metatarsal. This last facet is situated at the dorsal angle of the base[Wikipedia:Third_metatarsal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003852.md b/md/UBERON/52/UBERON_0003852.md index c37f1db3b9..608c1843a5 100644 --- a/md/UBERON/52/UBERON_0003852.md +++ b/md/UBERON/52/UBERON_0003852.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003852 * *Label* = rhombencephalon neural crest - * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neural crest hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007063] - * rhombencephalic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007063] + * neural crest hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007063 ] + * rhombencephalic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007063 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cranial neural crest that is part of the hindbrain.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0003952.md b/md/UBERON/52/UBERON_0003952.md index df199e52ac..6aba8a0802 100644 --- a/md/UBERON/52/UBERON_0003952.md +++ b/md/UBERON/52/UBERON_0003952.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003952 * *Label* = anterior stroma of cornea - * *Definition* = the anterior segment of the lamellated connective tissue layer of the cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003093] + * *Definition* = the anterior segment of the lamellated connective tissue layer of the cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003093 ] ## Synonyms - * anterior stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003093] + * anterior stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003093 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004052.md b/md/UBERON/52/UBERON_0004052.md index c75c31a415..7155ac6d95 100644 --- a/md/UBERON/52/UBERON_0004052.md +++ b/md/UBERON/52/UBERON_0004052.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004052 * *Label* = quadrigeminal cistern - * *Definition* = the enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009035] + * *Definition* = the enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009035 ] ## Synonyms - * ambient cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511] - * cistern of great cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511] - * cisterna ambiens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cisterna quadrigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cisterna venae magnae cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74511] + * ambient cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511 ] + * cistern of great cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511 ] + * cisterna ambiens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cisterna quadrigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cisterna venae magnae cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74511 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:74511 * NeuroNames:26 * SCTID:56154003 - * UMLS:C0228150 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Quadrigeminal_Cistern] + * UMLS:C0228150 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Quadrigeminal_Cistern ] * ncithesaurus:Quadrigeminal_Cistern ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004152.md b/md/UBERON/52/UBERON_0004152.md index e3f2a0d90a..82a6a781ea 100644 --- a/md/UBERON/52/UBERON_0004152.md +++ b/md/UBERON/52/UBERON_0004152.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004152 * *Label* = bulbus arteriosus - * *Definition* = The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003232[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15108157] + * *Definition* = The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003232, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15108157 ] * *Comment* = Evolution notes: replaces conus arteriosis in cartilaginous fish ## Synonyms - * truncus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000173] + * truncus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000173 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004252.md b/md/UBERON/52/UBERON_0004252.md index 3ef1341f91..570c5065af 100644 --- a/md/UBERON/52/UBERON_0004252.md +++ b/md/UBERON/52/UBERON_0004252.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004252 * *Label* = hindlimb stylopod muscle - * *Definition* = A muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a hindlimb stylopod (upper leg)[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22470] - * thigh muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22470] - * upper leg muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000684] + * muscle of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22470 ] + * thigh muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22470 ] + * upper leg muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000684 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000374 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004452.md b/md/UBERON/52/UBERON_0004452.md index 0852649c13..ab7770a9cc 100644 --- a/md/UBERON/52/UBERON_0004452.md +++ b/md/UBERON/52/UBERON_0004452.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004452 * *Label* = carpal region - * *Definition* = A mesopodium that is part of a manus. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wrist[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A mesopodium that is part of a manus. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wrist, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * carpal limb segment * carpal segment - * fore basipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * fore mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * fore basipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * fore mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] * hand mesopodium * manus mesopodium - * regio carpalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24922[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000039] + * regio carpalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24922, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000039 ] * wrist region - * articulatio radiocarpea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wrist[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * carpus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * articulatio radiocarpea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wrist, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * carpus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -49,7 +49,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesopodium region](../../UBERON/16/UBERON_0006716.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0001462 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004552.md b/md/UBERON/52/UBERON_0004552.md index c95e1b9618..6cb8699c22 100644 --- a/md/UBERON/52/UBERON_0004552.md +++ b/md/UBERON/52/UBERON_0004552.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004552 * *Label* = digital artery - * *Definition* = An artery that is part of a digit [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An artery that is part of a digit [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = check part_of - do we need term for digit + metacarpal/tarsal bones? ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit](../../UBERON/44/UBERON_0002544.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004652.md b/md/UBERON/52/UBERON_0004652.md index 6d5cc43dbe..e7804f2a8e 100644 --- a/md/UBERON/52/UBERON_0004652.md +++ b/md/UBERON/52/UBERON_0004652.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004652 * *Label* = humerus diaphysis - * *Definition* = The body or shaft of the humerus is almost cylindrical in the upper half of its extent, prismatic and flattened below, and has three borders and three surfaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_humerus] + * *Definition* = The body or shaft of the humerus is almost cylindrical in the upper half of its extent, prismatic and flattened below, and has three borders and three surfaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_humerus ] ## Synonyms - * body of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13305] - * corpus humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13305[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * diaphysis of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13305] - * humeral diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13305] - * shaft of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13305] - * body of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_humerus] - * medial humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_humerus] - * shaft of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_humerus] + * body of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13305 ] + * corpus humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13305, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * diaphysis of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13305 ] + * humeral diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13305 ] + * shaft of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13305 ] + * body of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_humerus ] + * medial humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_humerus ] + * shaft of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_humerus ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [humerus](../../UBERON/76/UBERON_0000976.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004752.md b/md/UBERON/52/UBERON_0004752.md index 1118c0778b..e9454e39c8 100644 --- a/md/UBERON/52/UBERON_0004752.md +++ b/md/UBERON/52/UBERON_0004752.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004752 * *Label* = palatoquadrate cartilage - * *Definition* = the dorsal component of the mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoquadrate] + * *Definition* = the dorsal component of the mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoquadrate ] ## Synonyms - * dorsal mandibular cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001399] - * palatoquadrate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000379] - * quadrate cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001399] - * pterygoquadrate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001399[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * dorsal mandibular cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001399 ] + * palatoquadrate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000379 ] + * quadrate cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001399 ] + * pterygoquadrate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001399, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Column of catilage, remnant in the adult of the larval palatoquadrate cartilage, that is located lateral or antero-lateral to the auditory capsule.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004852.md b/md/UBERON/52/UBERON_0004852.md index 80d2e2c218..0cba7e0549 100644 --- a/md/UBERON/52/UBERON_0004852.md +++ b/md/UBERON/52/UBERON_0004852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004852 * *Label* = cardiovascular system endothelium - * *Definition* = An endothelium that is part of the cardiovascular system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An endothelium that is part of the cardiovascular system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = consider merging with 'endothelium' ## Synonyms @@ -16,7 +16,7 @@ * MA:0000717 * MESH:A07.231.330 * TAO:0002171 - * UMLS:C0014261 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vascular_Endothelium] + * UMLS:C0014261 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vascular_Endothelium ] * VHOG:0001217 * XAO:0000356 * ZFA:0001639 @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiovascular system](../../UBERON/35/UBERON_0004535.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrates and a very few invertebrates such as squids have evolved a secondary epithelium, the endothelium, that lines their blood vessels.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0004952.md b/md/UBERON/52/UBERON_0004952.md index 96af8e2b7f..af26d0f2d8 100644 --- a/md/UBERON/52/UBERON_0004952.md +++ b/md/UBERON/52/UBERON_0004952.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004952 * *Label* = submucosa of bronchiole - * *Definition* = A submucosa that is part of a bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchiole submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobular bronchiole submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiole submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobular bronchiole submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [bronchiole](../../UBERON/86/UBERON_0002186.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005052.md b/md/UBERON/52/UBERON_0005052.md index 5bad6162dd..1598bcc677 100644 --- a/md/UBERON/52/UBERON_0005052.md +++ b/md/UBERON/52/UBERON_0005052.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005052 * *Label* = gizzard - * *Definition* = The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000520[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gizzard] + * *Definition* = The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000520, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gizzard ] * *Comment* = Taxon notes: currently restricted to Aves, but may be found outside - e.g. Pangolins. AO notes: BTO also includes: A thickened part of the alimentary canal in some animals (as an insect or an earthworm) that is similar in function to the crop of a bird. However, we are refering to the Aves structure here. ## Synonyms - * gastric mill [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gizzard] - * gigerium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gizzard] - * ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gizzard] + * gastric mill [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gizzard ] + * gigerium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gizzard ] + * ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gizzard ] ## Cross-references * BTO:0000520 * GAID:1238 * MESH:A13.853.363 - * UMLS:C1510668 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gizzard] + * UMLS:C1510668 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gizzard ] * Wikipedia:Gizzard * ncithesaurus:Gizzard @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005252.md b/md/UBERON/52/UBERON_0005252.md index cd91b39132..1a1cf66f58 100644 --- a/md/UBERON/52/UBERON_0005252.md +++ b/md/UBERON/52/UBERON_0005252.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005252 * *Label* = omental bursa cavity - * *Definition* = An anatomical cavity that is part of a lesser sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a lesser sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note EHDAA2 ## Synonyms - * cavity of lesser sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9702] - * cavity of omental bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9702] - * cavity of omental bursa viewed anatomically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9702] - * lesser peritoneal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9702] - * lesser sac cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9702] + * cavity of lesser sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9702 ] + * cavity of omental bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9702 ] + * cavity of omental bursa viewed anatomically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9702 ] + * lesser peritoneal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9702 ] + * lesser sac cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9702 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lesser sac](../../UBERON/41/UBERON_0001341.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005352.md b/md/UBERON/52/UBERON_0005352.md index 220335ba76..c83787fa03 100644 --- a/md/UBERON/52/UBERON_0005352.md +++ b/md/UBERON/52/UBERON_0005352.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005352 * *Label* = spermatic cord - * *Definition* = The cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010145[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spermatic_cord] + * *Definition* = The cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010145, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spermatic_cord ] ## Synonyms - * funiculus spermaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spermatic_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * funiculus spermaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spermatic_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spermatic chord ## Cross-references @@ -16,7 +16,7 @@ * GAID:395 * MESH:A05.360.444.777 * SCTID:181433005 - * UMLS:C0037855 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spermatic_Cord] + * UMLS:C0037855 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spermatic_Cord ] * Wikipedia:Spermatic_cord * http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005452.md b/md/UBERON/52/UBERON_0005452.md index 241083b341..960b341d25 100644 --- a/md/UBERON/52/UBERON_0005452.md +++ b/md/UBERON/52/UBERON_0005452.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005452 * *Label* = hepatic cord - * *Definition* = A three-dimensional arrangement formed by plates of hepatocytes, usually one cell thick, that radiates from the center of the liver lobule; hepatic laminae are highly branched, irregular structures bordered by endothelial lined vascular spaces called hepatic sinusoids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] + * *Definition* = A three-dimensional arrangement formed by plates of hepatocytes, usually one cell thick, that radiates from the center of the liver lobule; hepatic laminae are highly branched, irregular structures bordered by endothelial lined vascular spaces called hepatic sinusoids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Synonyms - * hepatic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14655] - * hepatic laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lamina hepatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14655] - * liver cell plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14655] - * hepatic plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14655[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * hepatic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14655 ] + * hepatic laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lamina hepatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14655 ] + * liver cell plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14655 ] + * hepatic plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14655, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005652.md b/md/UBERON/52/UBERON_0005652.md index f24d7294c6..8f10701b43 100644 --- a/md/UBERON/52/UBERON_0005652.md +++ b/md/UBERON/52/UBERON_0005652.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005652 * *Label* = pedal digit 5 epithelium - * *Definition* = An epithelium that is part of a pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 5 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 5 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 5 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0005852.md b/md/UBERON/52/UBERON_0005852.md index e82e0aa101..ce75d88416 100644 --- a/md/UBERON/52/UBERON_0005852.md +++ b/md/UBERON/52/UBERON_0005852.md @@ -10,8 +10,8 @@ ## Cross-references * NIF_GrossAnatomy:birnlex_1448 - * UMLS:C0228636 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1448] - * UMLS:C1288556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1448] + * UMLS:C0228636 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1448 ] + * UMLS:C1288556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1448 ] ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006052.md b/md/UBERON/52/UBERON_0006052.md index 23266c0de2..7b228d18cb 100644 --- a/md/UBERON/52/UBERON_0006052.md +++ b/md/UBERON/52/UBERON_0006052.md @@ -30,8 +30,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006252.md b/md/UBERON/52/UBERON_0006252.md index 8d0e9bfa9f..e0d1847861 100644 --- a/md/UBERON/52/UBERON_0006252.md +++ b/md/UBERON/52/UBERON_0006252.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006452.md b/md/UBERON/52/UBERON_0006452.md index 9b0625b9be..40dafa1a2e 100644 --- a/md/UBERON/52/UBERON_0006452.md +++ b/md/UBERON/52/UBERON_0006452.md @@ -6,15 +6,15 @@ ## Synonyms - * T4 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71170] - * T4 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1378] + * T4 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71170 ] + * T4 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1378 ] ## Cross-references * FMA:71170 * NIF_GrossAnatomy:birnlex_1378 * SCTID:278766006 - * UMLS:C0457862 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1378] + * UMLS:C0457862 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1378 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006652.md b/md/UBERON/52/UBERON_0006652.md index fd632ab834..bd5845da9c 100644 --- a/md/UBERON/52/UBERON_0006652.md +++ b/md/UBERON/52/UBERON_0006652.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006652 * *Label* = muscular layer of vagina - * *Definition* = A muscle tissue that is part of a vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle tissue that is part of a vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscular coat of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19976] - * tunica muscularis vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19976[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscular coat of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19976 ] + * tunica muscularis vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19976, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * vaginal muscularis ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006852.md b/md/UBERON/52/UBERON_0006852.md index 8412bb37c1..71e1792590 100644 --- a/md/UBERON/52/UBERON_0006852.md +++ b/md/UBERON/52/UBERON_0006852.md @@ -6,7 +6,7 @@ ## Synonyms - * podocyte layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002607] + * podocyte layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002607 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0006952.md b/md/UBERON/52/UBERON_0006952.md index 6203c56ee5..c410db4d65 100644 --- a/md/UBERON/52/UBERON_0006952.md +++ b/md/UBERON/52/UBERON_0006952.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006952 * *Label* = outer dental epithelium - * *Definition* = Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Outer_enamel_epithelium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Outer_enamel_epithelium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * external dental epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003462] - * external enamel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Outer_enamel_epithelium] - * outer enamel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium enameleum externum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Outer_enamel_epithelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * outer enamel epithilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005137] + * external dental epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003462 ] + * external enamel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Outer_enamel_epithelium ] + * outer enamel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium enameleum externum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Outer_enamel_epithelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * outer enamel epithilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005137 ] ## Cross-references * BTO:0003462 * TAO:0005137 - * UMLS:C1518682 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Outer_Enamel_Epithelium] + * UMLS:C1518682 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Outer_Enamel_Epithelium ] * Wikipedia:Outer_enamel_epithelium * ZFA:0005137 * http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Outer layer of the dental organ.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0007152.md b/md/UBERON/52/UBERON_0007152.md index 0dcbcac419..ca8d07009b 100644 --- a/md/UBERON/52/UBERON_0007152.md +++ b/md/UBERON/52/UBERON_0007152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007152 * *Label* = inferior sagittal sinus - * *Definition* = An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Inferior_Sagittal_Sinus] + * *Definition* = An intracranial venous sinus that lies in a midline location along the lower free border of the falx cerebri of the brain. The sinus receives blood from the great cerebral vein and joins the superior sagittal sinus posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Inferior_Sagittal_Sinus ] ## Synonyms @@ -13,7 +13,7 @@ * EMAPA:18635 * FMA:50768 * SCTID:279260007 - * UMLS:C0226861 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Sagittal_Sinus] + * UMLS:C0226861 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Sagittal_Sinus ] * ncithesaurus:Inferior_Sagittal_Sinus ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0007252.md b/md/UBERON/52/UBERON_0007252.md index f73f11a54f..98d6e7761c 100644 --- a/md/UBERON/52/UBERON_0007252.md +++ b/md/UBERON/52/UBERON_0007252.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007252 * *Label* = intervertebral disk of cervical vertebra - * *Definition* = An intervertebral disk that is part of a cervical region of vertebral column. A cervical intervertebral disk connects at least one cervical vertebra, either to another cervical vertebra, or at one point on the vertebral colummn, to a thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intervertebral disk that is part of a cervical region of vertebral column. A cervical intervertebral disk connects at least one cervical vertebra, either to another cervical vertebra, or at one point on the vertebral colummn, to a thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * cervical intervertebral disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13895] - * intervertebral disc of cervical region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19415] + * cervical intervertebral disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13895 ] + * intervertebral disc of cervical region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19415 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intervertebral disk](../../UBERON/66/UBERON_0001066.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical region of vertebral column](../../UBERON/72/UBERON_0006072.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0007352.md b/md/UBERON/52/UBERON_0007352.md index 20b97ee39d..003d72eb2b 100644 --- a/md/UBERON/52/UBERON_0007352.md +++ b/md/UBERON/52/UBERON_0007352.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007352 * *Label* = stria vascularis vasculature - * *Definition* = blood vessels supplying the stria vascularis in the cochlea of the inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004368] + * *Definition* = blood vessels supplying the stria vascularis in the cochlea of the inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004368 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [stria vascularis of cochlear duct](../../UBERON/82/UBERON_0002282.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0007652.md b/md/UBERON/52/UBERON_0007652.md index 2cb136c008..6eac95f471 100644 --- a/md/UBERON/52/UBERON_0007652.md +++ b/md/UBERON/52/UBERON_0007652.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007652 * *Label* = esophageal sphincter - * *Definition* = A sphincter muscle that is part of an esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * *Definition* = A sphincter muscle that is part of an esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * *Comment* = editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here ## Synonyms - * oesophagial sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000415] + * oesophagial sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000415 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0008252.md b/md/UBERON/52/UBERON_0008252.md index 7127709947..26a7579d57 100644 --- a/md/UBERON/52/UBERON_0008252.md +++ b/md/UBERON/52/UBERON_0008252.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008252 * *Label* = tube foot ampulla - * *Definition* = The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002124] + * *Definition* = The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002124 ] ## Synonyms - * ampulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002124] + * ampulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002124 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0008852.md b/md/UBERON/52/UBERON_0008852.md index a4458c5234..6cbd9b66ae 100644 --- a/md/UBERON/52/UBERON_0008852.md +++ b/md/UBERON/52/UBERON_0008852.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008852 * *Label* = visceral yolk sac - * *Definition* = extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001718] + * *Definition* = extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001718 ] ## Synonyms - * secondary yolk sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001718] - * umbilical vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001718] - * vitelline sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001718] - * yolk sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001718] + * secondary yolk sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001718 ] + * umbilical vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001718 ] + * vitelline sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001718 ] + * yolk sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001718 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0008952.md b/md/UBERON/52/UBERON_0008952.md index 32626ebc3d..af66e828d5 100644 --- a/md/UBERON/52/UBERON_0008952.md +++ b/md/UBERON/52/UBERON_0008952.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008952 * *Label* = upper lobe of left lung - * *Definition* = The lobe of the left lung that is closest to the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The lobe of the left lung that is closest to the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * left lung cranial lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000953] - * left upper lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7370] - * left upper lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7370] - * lobus superior pulmonis sinistri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior lobe of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7370] + * left lung cranial lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000953 ] + * left upper lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7370 ] + * left upper lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7370 ] + * lobus superior pulmonis sinistri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior lobe of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7370 ] ## Cross-references @@ -19,7 +19,7 @@ * EHDAA:4957 * FMA:7370 * SCTID:361984006 - * UMLS:C1261076 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Lobe_of_the_Left_Lung] + * UMLS:C1261076 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Lobe_of_the_Left_Lung ] * galen:UpperLobeOfLeftLung * ncithesaurus:Upper_Lobe_of_the_Left_Lung @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) and [upper lobe of lung](../../UBERON/48/UBERON_0008948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009052.md b/md/UBERON/52/UBERON_0009052.md index 013a8c230e..3daa108547 100644 --- a/md/UBERON/52/UBERON_0009052.md +++ b/md/UBERON/52/UBERON_0009052.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009552.md b/md/UBERON/52/UBERON_0009552.md index e26e247127..53a0050637 100644 --- a/md/UBERON/52/UBERON_0009552.md +++ b/md/UBERON/52/UBERON_0009552.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009552 * *Label* = distal segment of manual digit - * *Definition* = A segment of the manual digit containing the distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A segment of the manual digit containing the distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = in SNOMED this is a surface region. Here we intend it to be the entire distal segment ## Synonyms - * finger digit tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/nature10346] - * finger distal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * finger tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * fingertip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0001211] - * forelimb digit tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/nature10346] + * finger digit tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/nature10346 ] + * finger distal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * finger tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * fingertip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0001211 ] + * forelimb digit tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/nature10346 ] * tip of finger ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal segment of digit](../../UBERON/51/UBERON_0009551.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004093 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009652.md b/md/UBERON/52/UBERON_0009652.md index 013e2a4216..7aa0ae5f5a 100644 --- a/md/UBERON/52/UBERON_0009652.md +++ b/md/UBERON/52/UBERON_0009652.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009652 * *Label* = bronchus basement membrane - * *Definition* = A basement membrane that is part of a bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basement membrane that is part of a bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0001832 - * UMLS:C1707051 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Basement_Membrane] + * UMLS:C1707051 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Basement_Membrane ] * ncithesaurus:Bronchus_Basement_Membrane ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basement membrane of epithelium](../../UBERON/69/UBERON_0005769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009752.md b/md/UBERON/52/UBERON_0009752.md index 3180f33b48..4d98801d88 100644 --- a/md/UBERON/52/UBERON_0009752.md +++ b/md/UBERON/52/UBERON_0009752.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009752 * *Label* = pancreas mesenchyme - * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011265] + * *Definition* = the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011265 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pancreas](../../UBERON/64/UBERON_0001264.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009852.md b/md/UBERON/52/UBERON_0009852.md index abef26a259..d74e689510 100644 --- a/md/UBERON/52/UBERON_0009852.md +++ b/md/UBERON/52/UBERON_0009852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009852 * *Label* = border of sublaminar layers S2 and S3 - * *Definition* = The intersection of sublaminar layers S2 and S3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:tfm] + * *Definition* = The intersection of sublaminar layers S2 and S3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:tfm ] ## Synonyms @@ -18,20 +18,21 @@ * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) * [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layers S2 or S3](../../UBERON/28/UBERON_0008928.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [border between sublaminar layers](../../UBERON/40/UBERON_0009740.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S2](../../UBERON/23/UBERON_0008923.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [sublaminar layer S3](../../UBERON/24/UBERON_0008924.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0009952.md b/md/UBERON/52/UBERON_0009952.md index 136d3d80d3..1ce3175c6c 100644 --- a/md/UBERON/52/UBERON_0009952.md +++ b/md/UBERON/52/UBERON_0009952.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009952 * *Label* = subgranular zone - * *Definition* = a narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subgranular_zone] + * *Definition* = a narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subgranular_zone ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010052.md b/md/UBERON/52/UBERON_0010052.md index b3acc5398c..6e7f241689 100644 --- a/md/UBERON/52/UBERON_0010052.md +++ b/md/UBERON/52/UBERON_0010052.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010052 * *Label* = mucosa of dorsum of tongue - * *Definition* = A mucosa that is part of a dorsum of tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a dorsum of tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: check surface terms. Development notes: develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN10:1607950324 ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum of tongue](../../UBERON/71/UBERON_0009471.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010152.md b/md/UBERON/52/UBERON_0010152.md index 9e9dff4f9d..873a70db71 100644 --- a/md/UBERON/52/UBERON_0010152.md +++ b/md/UBERON/52/UBERON_0010152.md @@ -7,7 +7,7 @@ ## Synonyms - * epidermal mucus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005082] + * epidermal mucus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005082 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010252.md b/md/UBERON/52/UBERON_0010252.md index 7b5716f150..dcf2cf9410 100644 --- a/md/UBERON/52/UBERON_0010252.md +++ b/md/UBERON/52/UBERON_0010252.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010252 * *Label* = 1st arch mandibular mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch mandibular mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch mandibular mesenchyme](../../UBERON/84/UBERON_0009584.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010752.md b/md/UBERON/52/UBERON_0010752.md index d254f17cc1..cdd33e3193 100644 --- a/md/UBERON/52/UBERON_0010752.md +++ b/md/UBERON/52/UBERON_0010752.md @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [exoccipital endochondral element](../../UBERON/51/UBERON_0015051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010852.md b/md/UBERON/52/UBERON_0010852.md index 68667c19a0..fb533795ae 100644 --- a/md/UBERON/52/UBERON_0010852.md +++ b/md/UBERON/52/UBERON_0010852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010852 * *Label* = fibula pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a fibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a fibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [fibula](../../UBERON/46/UBERON_0001446.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0010952.md b/md/UBERON/52/UBERON_0010952.md index 89b4d75b07..9c91197dd1 100644 --- a/md/UBERON/52/UBERON_0010952.md +++ b/md/UBERON/52/UBERON_0010952.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010952 * *Label* = frontalis - * *Definition* = The frontalis muscle is thin, of a quadrilateral form, and intimately adherent to the superficial fascia. It is broader than the Occipitalis and its fibers are longer and paler in color. It is located on the front of the head. It has no bony attachments. Its medial fibers are continuous with those of the Procerus; its immediate fibers blend with the Corrugator and Orbicularis oculi, thus attached to the skin of the eyebrows; and its lateral fibers are also blended with the latter muscle over the zygomatic process of the frontal bone. In the eyebrows, its primary function is to lift them (thus opposing the orbital portion of the orbicularis), especially when looking up. It also acts when a view is too distant or dim. From these attachments the fibers are directed upward, and join the galea aponeurotica below the coronal suture. The medial margins of the Frontales are joined together for some distance above the root of the nose; but between the Occipitales there is a considerable, though variable, interval, occupied by the galea aponeurotica. It could be part of occipitofrontalis muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontalis_muscle] + * *Definition* = The frontalis muscle is thin, of a quadrilateral form, and intimately adherent to the superficial fascia. It is broader than the Occipitalis and its fibers are longer and paler in color. It is located on the front of the head. It has no bony attachments. Its medial fibers are continuous with those of the Procerus; its immediate fibers blend with the Corrugator and Orbicularis oculi, thus attached to the skin of the eyebrows; and its lateral fibers are also blended with the latter muscle over the zygomatic process of the frontal bone. In the eyebrows, its primary function is to lift them (thus opposing the orbital portion of the orbicularis), especially when looking up. It also acts when a view is too distant or dim. From these attachments the fibers are directed upward, and join the galea aponeurotica below the coronal suture. The medial margins of the Frontales are joined together for some distance above the root of the nose; but between the Occipitales there is a considerable, though variable, interval, occupied by the galea aponeurotica. It could be part of occipitofrontalis muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontalis_muscle ] ## Synonyms - * frontal belly of occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46757] - * frontal part of occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46757] - * orbito-temporo-auricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18657257] - * venter frontalis (musculus occipitofrontalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46757] - * venter frontalis musculus occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * frontal belly of occipitofrontalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontalis_muscle] - * venter frontalis musculi occipitofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * frontal belly of occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46757 ] + * frontal part of occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46757 ] + * orbito-temporo-auricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18657257 ] + * venter frontalis (musculus occipitofrontalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46757 ] + * venter frontalis musculus occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * frontal belly of occipitofrontalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontalis_muscle ] + * venter frontalis musculi occipitofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0011152.md b/md/UBERON/52/UBERON_0011152.md index 858b1448b2..b041f3922b 100644 --- a/md/UBERON/52/UBERON_0011152.md +++ b/md/UBERON/52/UBERON_0011152.md @@ -6,9 +6,9 @@ ## Synonyms - * dorsal hyoid arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001401] + * dorsal hyoid arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001401 ] * dorsal pharyngeal arch 2 skeleton - * dorsal visceral arch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001401] + * dorsal visceral arch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001401 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0011252.md b/md/UBERON/52/UBERON_0011252.md index e57fd56d8d..efd7e7b773 100644 --- a/md/UBERON/52/UBERON_0011252.md +++ b/md/UBERON/52/UBERON_0011252.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011252 * *Label* = scent gland - * *Definition* = Scent glands are exocrine glands found in most mammals. They produce semi-viscous secretions which contain pheromones and other semiochemical compounds. These odor-messengers indicate information such as status, territory marking, mood, and sexual power. The odor may be subliminalnot consciously detectable. Though it is not their primary function, the salivary glands may also function as scent glands in some animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scent_gland] + * *Definition* = Scent glands are exocrine glands found in most mammals. They produce semi-viscous secretions which contain pheromones and other semiochemical compounds. These odor-messengers indicate information such as status, territory marking, mood, and sexual power. The odor may be subliminalnot consciously detectable. Though it is not their primary function, the salivary glands may also function as scent glands in some animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scent_gland ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Exocrine glands in animals which secrete scents which either repel or attract other animals, e.g. perianal glands of skunks, anal glands of weasels, musk glands of foxes, ventral glands of wood rats, and dorsal glands of peccaries[MESH:A13.820]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0011652.md b/md/UBERON/52/UBERON_0011652.md index 62be8ad9f4..5791a7f243 100644 --- a/md/UBERON/52/UBERON_0011652.md +++ b/md/UBERON/52/UBERON_0011652.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011652 * *Label* = dorsal head of rib - * *Definition* = Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000722] + * *Definition* = Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000722 ] * *Comment* = Taxon notes: Ribs of primitive tetrapods are bicipital (having two heads)[Kardong]. Terminology notes: sometimes called the tuberculum, but not to be confused with the tubercle, which is between body and neck ## Synonyms * tuberculum of rib - * tuberculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000722] + * tuberculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000722 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [diapophysis of rib](../../UBERON/53/UBERON_0011653.md) and [head of rib](../../UBERON/30/UBERON_0002230.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0011952.md b/md/UBERON/52/UBERON_0011952.md index 72f1aac989..d2d5d24beb 100644 --- a/md/UBERON/52/UBERON_0011952.md +++ b/md/UBERON/52/UBERON_0011952.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011952 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0012152.md b/md/UBERON/52/UBERON_0012152.md index a93f59efe7..d76b130585 100644 --- a/md/UBERON/52/UBERON_0012152.md +++ b/md/UBERON/52/UBERON_0012152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012152 * *Label* = skeleton of pedal digitopodium - * *Definition* = A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ni[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A subdivision of the pes skeleton consisting of both pedal acropodial skeleton and metatarsal skeleton, but excluding the tarsal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ni, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Terminology notes: some sources call this the acropodium. see http://purl.obolibrary.org/obo/uberon/references/reference_0000019 ## Synonyms @@ -27,16 +27,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [skeleton of digitopodium](../../UBERON/50/UBERON_0012150.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012152 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000019 +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_0012252.md b/md/UBERON/52/UBERON_0012252.md index 7de2bd81f5..a313009f3d 100644 --- a/md/UBERON/52/UBERON_0012252.md +++ b/md/UBERON/52/UBERON_0012252.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012252 * *Label* = endocervical epithelium - * *Definition* = The glandular epithelium that lines the endocervix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Endocervical_Glandular_Epithelium] + * *Definition* = The glandular epithelium that lines the endocervix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Endocervical_Glandular_Epithelium ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endocervix](../../UBERON/58/UBERON_0000458.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012252 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0012352.md b/md/UBERON/52/UBERON_0012352.md index 2f21d697db..ef7cdfd109 100644 --- a/md/UBERON/52/UBERON_0012352.md +++ b/md/UBERON/52/UBERON_0012352.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012352 * *Label* = mesangial matrix - * *Definition* = Extracellular matrix secreted by intraglomerular mesangial cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011338] + * *Definition* = Extracellular matrix secreted by intraglomerular mesangial cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011338 ] ## Synonyms - * extracellular mesangial matrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011338] + * extracellular mesangial matrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011338 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012352 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0012652.md b/md/UBERON/52/UBERON_0012652.md index d390d32a99..9fd7044b4e 100644 --- a/md/UBERON/52/UBERON_0012652.md +++ b/md/UBERON/52/UBERON_0012652.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012652 * *Label* = colorectum - * *Definition* = The colon and rectum considered as a unit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001613] + * *Definition* = The colon and rectum considered as a unit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001613 ] ## Synonyms @@ -12,7 +12,7 @@ * BTO:0001613 * CALOHA:TS-1298 - * UMLS:C1711309 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Colorectal_Region] + * UMLS:C1711309 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Colorectal_Region ] * ncithesaurus:Colorectal_Region ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = colorectal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012652 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0013152.md b/md/UBERON/52/UBERON_0013152.md index 14e24fd70e..6fa1daf478 100644 --- a/md/UBERON/52/UBERON_0013152.md +++ b/md/UBERON/52/UBERON_0013152.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013152 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0013552.md b/md/UBERON/52/UBERON_0013552.md index 9baa1d1650..5757615d3e 100644 --- a/md/UBERON/52/UBERON_0013552.md +++ b/md/UBERON/52/UBERON_0013552.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013552 * *Label* = Brodmann (1909) area 21 - * *Definition* = Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_21] + * *Definition* = Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_21 ] ## Synonyms - * B09-21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1752] - * BA21 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1752] + * B09-21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1752 ] + * BA21 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1752 ] * Brodmann area 21 - * Brodmann area 21, middle temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1752] - * area 21 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68618] - * area 21 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1752] - * B09-21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1752[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 21 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1016] - * area temporalis media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1752] - * brodmann's area 21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1016] + * Brodmann area 21, middle temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1752 ] + * area 21 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68618 ] + * area 21 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1752 ] + * B09-21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1752, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 21 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1016 ] + * area temporalis media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1752 ] + * brodmann's area 21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1016 ] ## Cross-references * FMA:68618 * NIF_GrossAnatomy:birnlex_1752 - * NeuroNames:1016 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1752] - * UMLS:C1272539 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1752] + * NeuroNames:1016 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1752 ] + * UMLS:C1272539 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1752 ] * Wikipedia:Brodmann_area_21 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0013752.md b/md/UBERON/52/UBERON_0013752.md index 61c95335fc..ecd09f093e 100644 --- a/md/UBERON/52/UBERON_0013752.md +++ b/md/UBERON/52/UBERON_0013752.md @@ -6,11 +6,11 @@ ## Synonyms - * body of metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33804] - * corpus ossis metacarpi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * metacarpal bone diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33804] - * shaft of metacarpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33804] - * shaft of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33804] + * body of metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33804 ] + * corpus ossis metacarpi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * metacarpal bone diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33804 ] + * shaft of metacarpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33804 ] + * shaft of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33804 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0014452.md b/md/UBERON/52/UBERON_0014452.md index 34a28372fb..4e11824a69 100644 --- a/md/UBERON/52/UBERON_0014452.md +++ b/md/UBERON/52/UBERON_0014452.md @@ -6,12 +6,12 @@ ## Synonyms - * lingual gustatory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * lingual gustatory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references * NIF_GrossAnatomy:birnlex_4099 - * UMLS:C1179150 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4099] + * UMLS:C1179150 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4099 ] ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gustatory epithelium](../../UBERON/26/UBERON_0002926.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014452 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0014552.md b/md/UBERON/52/UBERON_0014552.md index ecc353c8d3..60142256cf 100644 --- a/md/UBERON/52/UBERON_0014552.md +++ b/md/UBERON/52/UBERON_0014552.md @@ -6,8 +6,8 @@ ## Synonyms - * CA1 part of stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA1 stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4116] + * CA1 part of stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA1 stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4116 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum oriens](../../UBERON/71/UBERON_0005371.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014552 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0014752.md b/md/UBERON/52/UBERON_0014752.md index 7c1bb8c11f..4b3c2ead78 100644 --- a/md/UBERON/52/UBERON_0014752.md +++ b/md/UBERON/52/UBERON_0014752.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014752 * *Label* = P2 area of pallium (Myxiniformes) - * *Definition* = Area directly deep to the P1 area of pallium in hagfishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Area directly deep to the P1 area of pallium in hagfishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014752 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0014852.md b/md/UBERON/52/UBERON_0014852.md index ad8453a422..bde44da263 100644 --- a/md/UBERON/52/UBERON_0014852.md +++ b/md/UBERON/52/UBERON_0014852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014852 * *Label* = chorda tendinea of right ventricle - * *Definition* = Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9300] + * *Definition* = Chorda tendinea which is attached to the leaflet of tricuspid valve and is continuous with the endocardium of papillary muscle of right ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9300 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [chordae tendineae](../../UBERON/94/UBERON_0005994.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014852 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_0015052.md b/md/UBERON/52/UBERON_0015052.md index c4be0a4637..b1fd11f5a6 100644 --- a/md/UBERON/52/UBERON_0015052.md +++ b/md/UBERON/52/UBERON_0015052.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015052 * *Label* = femur endochondral element - * *Definition* = A femur bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A femur bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * femur element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * femur skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * femur element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * femur skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [femur cartilage element](../../UBERON/29/UBERON_0010129.md)or[femur pre-cartilage condensation](../../UBERON/34/UBERON_0006234.md)or[femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015052 + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2000052.md b/md/UBERON/52/UBERON_2000052.md index 21fe66ccba..6f4dc8830b 100644 --- a/md/UBERON/52/UBERON_2000052.md +++ b/md/UBERON/52/UBERON_2000052.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000052 * *Label* = dorsal actinotrichium - * *Definition* = Actinotrichium which is part of the dorsal fin fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium which is part of the dorsal fin fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal actinotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000052[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * dorsal actinotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000052, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin fold](../../UBERON/02/UBERON_2000102.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2000352.md b/md/UBERON/52/UBERON_2000352.md index 7f9408db0c..e54cece9a7 100644 --- a/md/UBERON/52/UBERON_2000352.md +++ b/md/UBERON/52/UBERON_2000352.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2000452.md b/md/UBERON/52/UBERON_2000452.md index 293faccf84..8d9d2ea80b 100644 --- a/md/UBERON/52/UBERON_2000452.md +++ b/md/UBERON/52/UBERON_2000452.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000452 * *Label* = urohyal - * *Definition* = Tendon bone that forms in the tendon of the sternohyoid muscles ventral to the anterior end of copula 1. The urohyal associates by ligaments to the ventral hypohyals or it articulates with the ventral hypohyals. The urohyal is an unpaired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tendon bone that forms in the tendon of the sternohyoid muscles ventral to the anterior end of copula 1. The urohyal associates by ligaments to the ventral hypohyals or it articulates with the ventral hypohyals. The urohyal is an unpaired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The urohyal forms as a single ossification in most teleosts, or as a paired ossification. ## Synonyms - * clidoste [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] - * interclaviculaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000143] - * jugulaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000109] - * parurohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_Schultze_1990] - * urohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * clidoste [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] + * interclaviculaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000143 ] + * jugulaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000109 ] + * parurohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_Schultze_1990 ] + * urohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -39,7 +39,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2000752.md b/md/UBERON/52/UBERON_2000752.md index acd3a2521c..cc09eabb5a 100644 --- a/md/UBERON/52/UBERON_2000752.md +++ b/md/UBERON/52/UBERON_2000752.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000752[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000752, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_2000852.md b/md/UBERON/52/UBERON_2000852.md index 89385faeb7..bde9c53510 100644 --- a/md/UBERON/52/UBERON_2000852.md +++ b/md/UBERON/52/UBERON_2000852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000852 * *Label* = somite 15 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 15 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2000952.md b/md/UBERON/52/UBERON_2000952.md index 4053a13f8e..09ce11545b 100644 --- a/md/UBERON/52/UBERON_2000952.md +++ b/md/UBERON/52/UBERON_2000952.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000952 * *Label* = sclerotome somite 1 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001052.md b/md/UBERON/52/UBERON_2001052.md index 7daf2c6993..7fd43a05e2 100644 --- a/md/UBERON/52/UBERON_2001052.md +++ b/md/UBERON/52/UBERON_2001052.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001052 * *Label* = primordial hindbrain channel - * *Definition* = The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PHCB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001052] - * medial head vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001052] + * PHCB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001052 ] + * medial head vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001052 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001152.md b/md/UBERON/52/UBERON_2001152.md index c97233d0f0..fc11b214ca 100644 --- a/md/UBERON/52/UBERON_2001152.md +++ b/md/UBERON/52/UBERON_2001152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001152 * *Label* = tooth 3MD - * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#tooth_number](../../core#tooth/er/core#tooth_number.md)* = 3 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001252.md b/md/UBERON/52/UBERON_2001252.md index c11ced9981..c89d17fe90 100644 --- a/md/UBERON/52/UBERON_2001252.md +++ b/md/UBERON/52/UBERON_2001252.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001252 * *Label* = pharyngobranchial 3 bone - * *Definition* = Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngobranchial bone, located medial to the epibranchials and posteriorly adjacent to pharyngobranchial 2 element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001252] + * infrapharyngobranchial 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001252 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001352.md b/md/UBERON/52/UBERON_2001352.md index ae99f042e4..7da823ba3b 100644 --- a/md/UBERON/52/UBERON_2001352.md +++ b/md/UBERON/52/UBERON_2001352.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001552.md b/md/UBERON/52/UBERON_2001552.md index a6dc25ae6d..ed45ef6646 100644 --- a/md/UBERON/52/UBERON_2001552.md +++ b/md/UBERON/52/UBERON_2001552.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001552 * *Label* = obsolete pelvic fin lepidotrichium - * *Definition* = Lepidotrichium which is part of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lepidotrichium which is part of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * pelvic fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001552[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * pelvic fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001552] + * pelvic fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001552, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * pelvic fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001552 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000173 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_2001652.md b/md/UBERON/52/UBERON_2001652.md index b7e812e7de..70dd096e74 100644 --- a/md/UBERON/52/UBERON_2001652.md +++ b/md/UBERON/52/UBERON_2001652.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001652 * *Label* = pharyngobranchial 3 tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngobranchial 3 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001652] + * pharyngobranchial 3 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001652 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001752.md b/md/UBERON/52/UBERON_2001752.md index dc1869e3c5..992a8a1226 100644 --- a/md/UBERON/52/UBERON_2001752.md +++ b/md/UBERON/52/UBERON_2001752.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001752 * *Label* = pre-narial cartilage - * *Definition* = The pre-narial cartilage is a cartilage that is located anterior to the anterior naris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = The pre-narial cartilage is a cartilage that is located anterior to the anterior naris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Chen 1994. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001852.md b/md/UBERON/52/UBERON_2001852.md index 3d23adf8b4..cfdd2a011e 100644 --- a/md/UBERON/52/UBERON_2001852.md +++ b/md/UBERON/52/UBERON_2001852.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001852 * *Label* = postcleithrum 1 - * *Definition* = Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2001952.md b/md/UBERON/52/UBERON_2001952.md index fd7f311ffe..d6ffa2bbad 100644 --- a/md/UBERON/52/UBERON_2001952.md +++ b/md/UBERON/52/UBERON_2001952.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001952 * *Label* = dentary tooth row - * *Definition* = Tooth row that is on the dentary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is on the dentary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2002052.md b/md/UBERON/52/UBERON_2002052.md index 2d21583f9a..73f1e5100d 100644 --- a/md/UBERON/52/UBERON_2002052.md +++ b/md/UBERON/52/UBERON_2002052.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002052 * *Label* = prootic depression - * *Definition* = Shallow area that exists on the prootic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Shallow area that exists on the prootic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2002152.md b/md/UBERON/52/UBERON_2002152.md index 0362c707f2..fb911b9a42 100644 --- a/md/UBERON/52/UBERON_2002152.md +++ b/md/UBERON/52/UBERON_2002152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002152 * *Label* = vertebral element 12 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 12 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2002252.md b/md/UBERON/52/UBERON_2002252.md index 477d0363a4..2598da728c 100644 --- a/md/UBERON/52/UBERON_2002252.md +++ b/md/UBERON/52/UBERON_2002252.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2005052.md b/md/UBERON/52/UBERON_2005052.md index 0ee65b7de5..e3919bcdd9 100644 --- a/md/UBERON/52/UBERON_2005052.md +++ b/md/UBERON/52/UBERON_2005052.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005052 * *Label* = anterior mesencephalic central artery - * *Definition* = Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * AMCtA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005052] - * rostral mesencephalic central artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005052] + * AMCtA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005052 ] + * rostral mesencephalic central artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005052 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_2005152.md b/md/UBERON/52/UBERON_2005152.md index 6d5df8d4aa..a3d44ed52d 100644 --- a/md/UBERON/52/UBERON_2005152.md +++ b/md/UBERON/52/UBERON_2005152.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005152 * *Label* = obsolete silver iridophore - * *Definition* = Iridescent iridophore containing silver reflecting platelets. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Iridescent iridophore containing silver reflecting platelets. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_2007052.md b/md/UBERON/52/UBERON_2007052.md index afa9fe0055..d554c09cc5 100644 --- a/md/UBERON/52/UBERON_2007052.md +++ b/md/UBERON/52/UBERON_2007052.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007052 * *Label* = hyohyoideus - * *Definition* = Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-020703-2] + * *Definition* = Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-020703-2 ] ## Synonyms - * hyohyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007052[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * hyohyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007052, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3000052.md b/md/UBERON/52/UBERON_3000052.md index 5267a397d9..5186e96368 100644 --- a/md/UBERON/52/UBERON_3000052.md +++ b/md/UBERON/52/UBERON_3000052.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3000652.md b/md/UBERON/52/UBERON_3000652.md index 51aa6ba4ea..7c067f243e 100644 --- a/md/UBERON/52/UBERON_3000652.md +++ b/md/UBERON/52/UBERON_3000652.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000652 * *Label* = fossa maxillaris - * *Definition* = Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] * *Comment* = Alternative more fish orientated definition. A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine. [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.] @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3000752.md b/md/UBERON/52/UBERON_3000752.md index e841dbe172..496577c03f 100644 --- a/md/UBERON/52/UBERON_3000752.md +++ b/md/UBERON/52/UBERON_3000752.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000752 * *Label* = pars acromialis - * *Definition* = Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3000952.md b/md/UBERON/52/UBERON_3000952.md index 7232ca0420..0d9c65f3cc 100644 --- a/md/UBERON/52/UBERON_3000952.md +++ b/md/UBERON/52/UBERON_3000952.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000952 * *Label* = posterior radial - * *Definition* = Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3010452.md b/md/UBERON/52/UBERON_3010452.md index c21da3de8a..fb24e93475 100644 --- a/md/UBERON/52/UBERON_3010452.md +++ b/md/UBERON/52/UBERON_3010452.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3010552.md b/md/UBERON/52/UBERON_3010552.md index 5ef80dfdbb..051d20b4fe 100644 --- a/md/UBERON/52/UBERON_3010552.md +++ b/md/UBERON/52/UBERON_3010552.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010552 * *Label* = obsolete gastrula cell - * *Definition* = A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000361 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/52/UBERON_3010652.md b/md/UBERON/52/UBERON_3010652.md index ee52c26edf..5b8b3cdae2 100644 --- a/md/UBERON/52/UBERON_3010652.md +++ b/md/UBERON/52/UBERON_3010652.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010652 * *Label* = ramules nasalis lateralis - * *Definition* = First branch gives rise to two ramules that border the naris and innervate the surrounding tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = First branch gives rise to two ramules that border the naris and innervate the surrounding tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_3010752.md b/md/UBERON/52/UBERON_3010752.md index 726f68fb97..f951e7acb4 100644 --- a/md/UBERON/52/UBERON_3010752.md +++ b/md/UBERON/52/UBERON_3010752.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_4000052.md b/md/UBERON/52/UBERON_4000052.md index 98cc30312c..be629a4749 100644 --- a/md/UBERON/52/UBERON_4000052.md +++ b/md/UBERON/52/UBERON_4000052.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000052 * *Label* = ganoid scale - * *Definition* = Thick, rhomboid-shaped integumentary skeletal element composed of multiple tissues including ganoine and bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Thick, rhomboid-shaped integumentary skeletal element composed of multiple tissues including ganoine and bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_4200052.md b/md/UBERON/52/UBERON_4200052.md index cd5f251a24..6aa526f88e 100644 --- a/md/UBERON/52/UBERON_4200052.md +++ b/md/UBERON/52/UBERON_4200052.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/52/UBERON_4200152.md b/md/UBERON/52/UBERON_4200152.md index e9ae068af1..ce9c24ac43 100644 --- a/md/UBERON/52/UBERON_4200152.md +++ b/md/UBERON/52/UBERON_4200152.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0000053.md b/md/UBERON/53/UBERON_0000053.md index 05cdcd8647..10cce19534 100644 --- a/md/UBERON/53/UBERON_0000053.md +++ b/md/UBERON/53/UBERON_0000053.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000053 * *Label* = macula lutea - * *Definition* = Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea[WP]. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.371.729.522[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Macula_of_retina] + * *Definition* = Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea[WP]. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.371.729.522, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Macula_of_retina ] ## Synonyms * macula - * macula flava retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003015] - * macula retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003015] + * macula flava retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003015 ] + * macula retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003015 ] * maculae ## Cross-references @@ -22,9 +22,9 @@ * MESH:A09.371.729.522 * NIF_GrossAnatomy:birnlex_2540 * SCTID:362517001 - * UMLS:C0450295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2540] - * UMLS:C0450295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Macula_Lutea] - * UMLS:C1284755 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2540] + * UMLS:C0450295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2540 ] + * UMLS:C0450295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Macula_Lutea ] + * UMLS:C1284755 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2540 ] * Wikipedia:Macula_of_retina * http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0000153.md b/md/UBERON/53/UBERON_0000153.md index b916a967fe..904ddea86a 100644 --- a/md/UBERON/53/UBERON_0000153.md +++ b/md/UBERON/53/UBERON_0000153.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0000353.md b/md/UBERON/53/UBERON_0000353.md index d7f6d9ef8f..99a00fe17e 100644 --- a/md/UBERON/53/UBERON_0000353.md +++ b/md/UBERON/53/UBERON_0000353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000353 * *Label* = parenchyma - * *Definition* = functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parenchyma] + * *Definition* = functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parenchyma ] ## Synonyms @@ -23,7 +23,7 @@ * EHDAA:9196 * EHDAA:9202 * FMA:45732 - * UMLS:C0933845 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parenchyma] + * UMLS:C0933845 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parenchyma ] * Wikipedia:Parenchyma * ncithesaurus:Parenchyma @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0000453.md b/md/UBERON/53/UBERON_0000453.md index befb48f03e..5f67b44a85 100644 --- a/md/UBERON/53/UBERON_0000453.md +++ b/md/UBERON/53/UBERON_0000453.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000453 * *Label* = decidua basalis - * *Definition* = area of uterine endometrium found between the implanted chorionic vesicle and the myometrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599] + * *Definition* = area of uterine endometrium found between the implanted chorionic vesicle and the myometrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012529, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599 ] * *Comment* = development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity ## Synonyms - * basal decidua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] - * decidua serotina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002819] + * basal decidua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] + * decidua serotina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002819 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:86477 * MA:0002905 * SCTID:362841006 - * UMLS:C0230965 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Decidua_Basalis] + * UMLS:C0230965 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Decidua_Basalis ] * ncithesaurus:Decidua_Basalis ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0000953.md b/md/UBERON/53/UBERON_0000953.md index 0d40e82845..4e3d7ee2d2 100644 --- a/md/UBERON/53/UBERON_0000953.md +++ b/md/UBERON/53/UBERON_0000953.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000953 * *Label* = obsolete visceral muscle - * *Definition* = involuntary non-striated muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Smooth_muscle] + * *Definition* = involuntary non-striated muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Smooth_muscle ] * *Comment* = terminological note: GO uses visceral and smooth interchangeably ## Synonyms @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000953 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/53/UBERON_0001053.md b/md/UBERON/53/UBERON_0001053.md index 7099c8a7ab..69ff96298e 100644 --- a/md/UBERON/53/UBERON_0001053.md +++ b/md/UBERON/53/UBERON_0001053.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001053 * *Label* = neurohemal organ - * *Definition* = A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002106] + * *Definition* = A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002106 ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001153.md b/md/UBERON/53/UBERON_0001153.md index 5b6528667c..b80bf9b101 100644 --- a/md/UBERON/53/UBERON_0001153.md +++ b/md/UBERON/53/UBERON_0001153.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001153 * *Label* = caecum - * *Definition* = Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cecum] + * *Definition* = Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cecum ] * *Comment* = Taxon notes: A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP] Kardong: in some herbivorous lizards, a cecum is present between small and large intestines ## Synonyms - * caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001559] - * cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14541] + * caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001559 ] + * cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14541 ] * intestinum crassum caecum - * caeca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ceca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * blind intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000166] - * blindgut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000166] - * intestinum caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000166] - * intestinum crassum cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000166] + * caeca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ceca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * blind intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000166 ] + * blindgut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000166 ] + * intestinum caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000166 ] + * intestinum crassum cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000166 ] ## Cross-references @@ -33,7 +33,7 @@ * MIAA:0000288 * OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA * SCTID:181256004 - * UMLS:C0007531 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cecum] + * UMLS:C0007531 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cecum ] * VHOG:0001559 * Wikipedia:Cecum * galen:Cecum @@ -65,8 +65,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = caecal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001253.md b/md/UBERON/53/UBERON_0001253.md index a634bf9501..e79d3c840b 100644 --- a/md/UBERON/53/UBERON_0001253.md +++ b/md/UBERON/53/UBERON_0001253.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001253 * *Label* = lamina propria of ureter - * *Definition* = A lamina propria that is part of a ureter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a ureter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lamina propria mucosa of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria mucosa of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ureter lamina propria - * ureter lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ureter lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ureter lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ureter lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001353.md b/md/UBERON/53/UBERON_0001353.md index ef2635d25e..1d7dc649dd 100644 --- a/md/UBERON/53/UBERON_0001353.md +++ b/md/UBERON/53/UBERON_0001353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001353 * *Label* = anal region - * *Definition* = The anus and surrounding regions. Encompasses both internal and external regions, where present [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The anus and surrounding regions. Encompasses both internal and external regions, where present [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -18,7 +18,7 @@ * MAT:0000042 * MIAA:0000042 * SCTID:362680001 - * UMLS:C0230120 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Region] + * UMLS:C0230120 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Region ] * VHOG:0000395 * WBbt:0006919 * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png @@ -32,7 +32,7 @@ ## Superclasses * [anatomical cluster](../../UBERON/77/UBERON_0000477.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [terminal part of digestive tract](../../UBERON/66/UBERON_0006866.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [proctodeum](../../UBERON/31/UBERON_0000931.md) ## Equivalencies @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001453.md b/md/UBERON/53/UBERON_0001453.md index 03882a9818..63ca741479 100644 --- a/md/UBERON/53/UBERON_0001453.md +++ b/md/UBERON/53/UBERON_0001453.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001453 * *Label* = distal tarsal bone 2 - * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005053[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_cuneiform_bone] + * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005053, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_cuneiform_bone ] * *Comment* = The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted] ## Synonyms - * cuneiforme 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005053] - * distal tarsal 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005053] + * cuneiforme 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005053 ] + * distal tarsal 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005053 ] * intermediate cuneiform - * mesocuneiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005053] + * mesocuneiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005053 ] * middle cuneiform * middle cuneiform bone of foot * second cuneiform bone * second cuneiform bone of foot - * tarsal 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000919] + * tarsal 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000919 ] * foot distal carpal bone 2 - * intermediate cuneiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24519] - * os cuneiforme intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002359] - * os cuneiforme intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os cuneiforme secundum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002359] - * os cuneiforme secundum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intermediate cuneiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24519 ] + * os cuneiforme intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002359 ] + * os cuneiforme intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os cuneiforme secundum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002359 ] + * os cuneiforme secundum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,7 +31,7 @@ * FMA:24519 * MA:0001353 * SCTID:179512006 - * UMLS:C1513292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot] + * UMLS:C1513292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot ] * VSAO:0005053 * Wikipedia:Intermediate_cuneiform_bone * galen:IntermediateCuneiform @@ -55,7 +55,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone 2 endochondral element](../../UBERON/05/UBERON_0015105.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001553.md b/md/UBERON/53/UBERON_0001553.md index 4cf0b2b6ee..7316a0bc69 100644 --- a/md/UBERON/53/UBERON_0001553.md +++ b/md/UBERON/53/UBERON_0001553.md @@ -13,7 +13,7 @@ * FMA:44598 * MA:0001998 * SCTID:67925000 - * UMLS:C0226495 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medial_Tarsal_Artery] + * UMLS:C0226495 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medial_Tarsal_Artery ] * ncithesaurus:Medial_Tarsal_Artery ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001653.md b/md/UBERON/53/UBERON_0001653.md index b7e7e1c89b..05db09e8ba 100644 --- a/md/UBERON/53/UBERON_0001653.md +++ b/md/UBERON/53/UBERON_0001653.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001653 * *Label* = facial vein - * *Definition* = The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_vein] + * *Definition* = The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_vein ] * *Comment* = Comment note MA and NCITA also has 'anterior facial vein' ## Synonyms - * face vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterior facial vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * vena facialis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * face vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterior facial vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * vena facialis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002115 * OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA * SCTID:181374006 - * UMLS:C0226532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Vein] + * UMLS:C0226532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Vein ] * Wikipedia:Facial_vein * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001753.md b/md/UBERON/53/UBERON_0001753.md index f984722a8f..5e0404e304 100644 --- a/md/UBERON/53/UBERON_0001753.md +++ b/md/UBERON/53/UBERON_0001753.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001753 * *Label* = cementum - * *Definition* = Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000062[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000062, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W] ## Synonyms - * cement [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55630] + * cement [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55630 ] * cement of tooth * cementum * cementum of tooth - * bone of attachment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000062] + * bone of attachment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000062 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002541 * MESH:A14.254.646.267 * SCTID:362114003 - * UMLS:C0011343 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cementum] + * UMLS:C0011343 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cementum ] * VSAO:0000062 * Wikipedia:Cementum * XAO:0004196 @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA:55630]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001853.md b/md/UBERON/53/UBERON_0001853.md index fa5d5b94b4..43724df637 100644 --- a/md/UBERON/53/UBERON_0001853.md +++ b/md/UBERON/53/UBERON_0001853.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001853 * *Label* = utricle of membranous labyrinth - * *Definition* = one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Utricle_(ear)] + * *Definition* = one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Utricle_(ear) ] * *Comment* = XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus ## Synonyms @@ -11,7 +11,7 @@ * membranous labyrinth utricle * utricle * utriculus (labyrinthus vestibularis) - * utriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000700] + * utriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000700 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0000247 * SCTID:279817006 * TAO:0000700 - * UMLS:C0042158 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Utricle] + * UMLS:C0042158 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Utricle ] * VHOG:0000289 * Wikipedia:Utricle_(ear) * XAO:0000195 @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The portion of the membranous labyrinth of the ear into which the semicircular ducts find their outlet. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0001953.md b/md/UBERON/53/UBERON_0001953.md index 7a33f7abed..49f971b0ab 100644 --- a/md/UBERON/53/UBERON_0001953.md +++ b/md/UBERON/53/UBERON_0001953.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001953 * *Label* = presubiculum - * *Definition* = a modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/presubiculum] + * *Definition* = a modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/presubiculum ] * *Comment* = Consider merging with BA27 ## Synonyms - * presubiculum (Cajal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1108] - * area 27 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * praesubiculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:167[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * presubiculum (Cajal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1108 ] + * area 27 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * praesubiculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:167, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:62486 * MA:0000923 * NIF_GrossAnatomy:birnlex_1108 - * NeuroNames:167 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1108] - * UMLS:C0175194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1108] + * NeuroNames:167 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1108 ] + * UMLS:C0175194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1108 ] * http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Brodmann_Cytoarchitectonics_27.png/200px-Brodmann_Cytoarchitectonics_27.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002053.md b/md/UBERON/53/UBERON_0002053.md index 327758dfd1..81b87b7240 100644 --- a/md/UBERON/53/UBERON_0002053.md +++ b/md/UBERON/53/UBERON_0002053.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002053 * *Label* = zona glomerulosa of adrenal gland - * *Definition* = The zona glomerulosa of the adrenal gland is the most superficial layer of the adrenal cortex, lying directly beneath the adrenal gland's capsule. Its cells are ovoid in shape and are arranged in clusters or arches. In response to increased potassium levels, renin or decreased blood flow to the kidneys, cells of the zona glomerulosa produce and secrete the mineralocorticoid aldosterone into the blood as part of the renin-angiotensin system. Aldosterone regulates the body's concentration of electrolytes, primarily sodium and potassium, by acting on the distal convoluted tubule of kidney nephrons to: increase sodium reabsorption increase potassium excretion increase water reabsorption through osmosis The enzyme aldosterone synthase acts in this location. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_glomerulosa] + * *Definition* = The zona glomerulosa of the adrenal gland is the most superficial layer of the adrenal cortex, lying directly beneath the adrenal gland's capsule. Its cells are ovoid in shape and are arranged in clusters or arches. In response to increased potassium levels, renin or decreased blood flow to the kidneys, cells of the zona glomerulosa produce and secrete the mineralocorticoid aldosterone into the blood as part of the renin-angiotensin system. Aldosterone regulates the body's concentration of electrolytes, primarily sodium and potassium, by acting on the distal convoluted tubule of kidney nephrons to: increase sodium reabsorption increase potassium excretion increase water reabsorption through osmosis The enzyme aldosterone synthase acts in this location. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_glomerulosa ] ## Synonyms - * adrenal gland zona glomerulosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001891] + * adrenal gland zona glomerulosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001891 ] * zona glomerulosa * zona glomerulosa of suprarenal gland - * glomerulosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000048] + * glomerulosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000048 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002153.md b/md/UBERON/53/UBERON_0002153.md index 0d45cf5baf..8583b85183 100644 --- a/md/UBERON/53/UBERON_0002153.md +++ b/md/UBERON/53/UBERON_0002153.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002153 * *Label* = fastigial nucleus - * *Definition* = The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fastigial_nucleus] + * *Definition* = The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fastigial_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * medial (fastigial) nucleus * medial cerebellar nucleus - * nucleus fastigii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003839] + * nucleus fastigii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003839 ] * roof nucleus-1 - * fasciculosus thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Fas] - * fastigial cerebellar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690] - * medial nucleus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690] - * nucleus (motorius) tecti cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus fastigiatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus fastigii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fastigial_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus fastigii cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus fastigius cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:690[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fasciculosus thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Fas ] + * fastigial cerebellar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690 ] + * medial nucleus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690 ] + * nucleus (motorius) tecti cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus fastigiatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus fastigii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fastigial_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus fastigii cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus fastigius cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:690, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,9 +32,9 @@ * FMA:72537 * MA:0001009 * NIF_GrossAnatomy:birnlex_1146 - * NeuroNames:690 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1146] + * NeuroNames:690 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1146 ] * SCTID:279224002 - * UMLS:C0175490 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1146] + * UMLS:C0175490 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1146 ] * VHOG:0001699 * Wikipedia:Fastigial_nucleus * http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = One or more deep cerebellar nuclei appear in agnathans, sharks, ropefishes, lungfishes, Latimeria, and amphibians. Reptiles have two nuclei (a medial and a lateral), and birds and mammals have three nuclei (a medial, a lateral, and an interposed nucleus). The medial nucleus of mammals is known as the fastigial nucleus, and the lateral nucleus is known as the dentate nucleus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008997 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002353.md b/md/UBERON/53/UBERON_0002353.md index 0ad5402a8f..94f58857a4 100644 --- a/md/UBERON/53/UBERON_0002353.md +++ b/md/UBERON/53/UBERON_0002353.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002353 * *Label* = atrioventricular bundle - * *Definition* = A part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003166[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_heart] + * *Definition* = A part of the His-Purkinje system that transmits signals from the AV node to the cardiac Purkinje fibers[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003166, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_heart ] ## Synonyms * AV bundle * His bundle - * atrioventricular bundle muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9484] - * atrioventricular fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9484] - * bundle of His [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9484[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003166] - * fasciculus atrioventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bundle_of_His[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * atrioventricular bundle muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9484 ] + * atrioventricular fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9484 ] + * bundle of His [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9484, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003166 ] + * fasciculus atrioventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bundle_of_His, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A07.541.409.273 * OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g * SCTID:362022007 - * UMLS:C0006382 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Atrioventricular_Bundle] + * UMLS:C0006382 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Atrioventricular_Bundle ] * Wikipedia:Bundle_of_His * galen:BundleOfHis * http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002453.md b/md/UBERON/53/UBERON_0002453.md index 6473c05bc0..aeab8428fb 100644 --- a/md/UBERON/53/UBERON_0002453.md +++ b/md/UBERON/53/UBERON_0002453.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002453 * *Label* = ethmoid sinus - * *Definition* = The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony lamin. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoid_bone_sinus] + * *Definition* = The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony lamin. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoid_bone_sinus ] ## Synonyms - * ethmoidal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84115] - * cellulae ethmoidales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoid_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ethmoidal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84115 ] + * cellulae ethmoidales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoid_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0001792 * MESH:A04.531.621.267 * SCTID:181206009 - * UMLS:C0015028 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ethmoid_Sinus] + * UMLS:C0015028 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ethmoid_Sinus ] * Wikipedia:Ethmoid_bone_sinus * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png * ncithesaurus:Ethmoid_Sinus @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002553.md b/md/UBERON/53/UBERON_0002553.md index d1eb2d9276..b5ad50e6ce 100644 --- a/md/UBERON/53/UBERON_0002553.md +++ b/md/UBERON/53/UBERON_0002553.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002553 * *Label* = anatomical cavity - * *Definition* = Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67552] + * *Definition* = Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67552 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002653.md b/md/UBERON/53/UBERON_0002653.md index 8aef97fd1b..447f5f08fc 100644 --- a/md/UBERON/53/UBERON_0002653.md +++ b/md/UBERON/53/UBERON_0002653.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002653 * *Label* = gracile fasciculus of medulla - * *Definition* = A gracile fasciculus that is part of a medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gracile fasciculus that is part of a medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * column of goll * fasciculus of goll - * goll's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72624] - * gracile fascicle (gall) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1282] - * gracile fascicle of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72624] - * medulla segment of fasciculus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72624] - * medulla segment of gracile fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72624] + * goll's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72624 ] + * gracile fascicle (gall) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1282 ] + * gracile fascicle of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72624 ] + * medulla segment of fasciculus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72624 ] + * medulla segment of gracile fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72624 ] * tract of gall - * accessory olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] - * fasciculus dorsolateralis gracilis (Golli) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:790[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus gracilis (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:790[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gracile fascicle (Goll) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:790] - * gracile fasciculus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:790] - * main olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] + * accessory olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] + * fasciculus dorsolateralis gracilis (Golli) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:790, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus gracilis (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:790, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gracile fascicle (Goll) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:790 ] + * gracile fasciculus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:790 ] + * main olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] ## Cross-references * BAMS:gr * FMA:72624 * NIF_GrossAnatomy:birnlex_1282 - * NeuroNames:790 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1282] - * UMLS:C0228522 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1282] + * NeuroNames:790 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1282 ] + * UMLS:C0228522 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1282 ] ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gracile fasciculus](../../UBERON/21/UBERON_0005821.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002753.md b/md/UBERON/53/UBERON_0002753.md index d0643164f2..f7f1e39440 100644 --- a/md/UBERON/53/UBERON_0002753.md +++ b/md/UBERON/53/UBERON_0002753.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002753 * *Label* = posterior spinocerebellar tract - * *Definition* = It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1585] + * *Definition* = It ascends the dorsal part of the lateral funiculus and enters the cerebellum via the restiform body. Within the cerebellum, its axons terminate in the ipsilateral hindlimb area of the anterior lobe and in the pyramis and the paramedian lobule predominantly ipsilaterally. Rostrally, it extends to lobules I and II. Afferents from the upper trunk, forelimbs, and the neck to the cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1585 ] ## Synonyms - * dorsal spinocerebellar tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72641] - * flechsig's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72641] - * dorsal spinocerebellar tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:807] + * dorsal spinocerebellar tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72641 ] + * flechsig's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72641 ] + * dorsal spinocerebellar tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:807 ] ## Cross-references @@ -19,9 +19,9 @@ * BM:DSCT * FMA:72641 * NIF_GrossAnatomy:birnlex_1585 - * NeuroNames:807 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1585] + * NeuroNames:807 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1585 ] * SCTID:369284002 - * UMLS:C0175560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1585] + * UMLS:C0175560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1585 ] * Wikipedia:Dorsal_spinocerebellar_tract * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted][Wikipedia:Dorsal_spinocerebellar_tract]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002853.md b/md/UBERON/53/UBERON_0002853.md index f2e781aeda..298dfaabc2 100644 --- a/md/UBERON/53/UBERON_0002853.md +++ b/md/UBERON/53/UBERON_0002853.md @@ -6,15 +6,15 @@ ## Synonyms - * tenth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6330] - * tenth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6330] + * tenth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6330 ] + * tenth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6330 ] ## Cross-references * EMAPA:25183 * FMA:6330 * NIF_GrossAnatomy:birnlex_2620 - * UMLS:C0501708 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2620] + * UMLS:C0501708 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2620 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0002953.md b/md/UBERON/53/UBERON_0002953.md index 3c12fbf98c..f5f45624c9 100644 --- a/md/UBERON/53/UBERON_0002953.md +++ b/md/UBERON/53/UBERON_0002953.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002953 * *Label* = lateral lemniscus - * *Definition* = A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_976[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lemniscus] + * *Definition* = A fiber bundle that runs through the medulla, pons and midbrain that arises in the cochlear nucleus and projects to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. The brainstem nuclei include the superior olive, the medial nucleus of the trapezoid body, and the dorsal nucleus of the lateral lemniscus. Fibers leaving these brainstem nuclei ascending to the inferior colliculus rejoin the lateral lemniscus. In that sense, this is not a 'lemniscus' in the true sense of the word (second order, decussated sensory axons), as there is third (and out of the lateral superior olive, fourth) order information coming out of some of these brainstem nuclei. Adapted from Wikipedia.org (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_976, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lemniscus ] ## Synonyms - * lateral fillet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72502] - * central acoustic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:609] - * intermediate interstitial nucleus of the medial longitudinal fasciculus II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:II] - * intermediate interstitial nucleus of the medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:II] - * lateral lemniscus (Reil) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:609] - * lemniscus acusticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:609[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lemniscus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lemniscus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral fillet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72502 ] + * central acoustic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:609 ] + * intermediate interstitial nucleus of the medial longitudinal fasciculus II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:II ] + * intermediate interstitial nucleus of the medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:II ] + * lateral lemniscus (Reil) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:609 ] + * lemniscus acusticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:609, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lemniscus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lemniscus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,9 +22,9 @@ * BM:Pons-LL * FMA:72502 * NIF_GrossAnatomy:birnlex_976 - * NeuroNames:609 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_976] + * NeuroNames:609 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_976 ] * SCTID:362399003 - * UMLS:C0152375 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_976] + * UMLS:C0152375 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_976 ] * Wikipedia:Lateral_lemniscus * http://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG @@ -47,8 +47,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003042 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003053.md b/md/UBERON/53/UBERON_0003053.md index 829e54c795..8ae154e875 100644 --- a/md/UBERON/53/UBERON_0003053.md +++ b/md/UBERON/53/UBERON_0003053.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003053 * *Label* = ventricular zone - * *Definition* = Proliferative region that is part of the ventricular system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001083] + * *Definition* = Proliferative region that is part of the ventricular system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001083 ] * *Comment* = in BTO this is restricted to the 4th ventricle - however this class also represents the early ventricular zone as well as its post-natal remnants. The MA class is named 'ventricular zone of brain' and is presumably restricted to the post-natal zone ## Synonyms * VZ - * brain ventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000819] + * brain ventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000819 ] * ventricular zone of brain ## Cross-references @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Proliferative zone in the region of the neural tube adjacent to the lumen. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons[BTO:0003654]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003153.md b/md/UBERON/53/UBERON_0003153.md index 133e586afe..63ee99e193 100644 --- a/md/UBERON/53/UBERON_0003153.md +++ b/md/UBERON/53/UBERON_0003153.md @@ -7,7 +7,7 @@ ## Synonyms - * Kopfkapsel@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004711] + * Kopfkapsel@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004711 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003253.md b/md/UBERON/53/UBERON_0003253.md index a211dff9b2..ce76f01512 100644 --- a/md/UBERON/53/UBERON_0003253.md +++ b/md/UBERON/53/UBERON_0003253.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003253 * *Label* = neck of rib - * *Definition* = The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_rib] + * *Definition* = The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_rib ] ## Synonyms - * collum costae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_rib] - * rib neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7576] - * collum costae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_rib[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * collum costae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_rib ] + * rib neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7576 ] + * collum costae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_rib, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neck of organ](../../UBERON/60/UBERON_0001560.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rib](../../UBERON/28/UBERON_0002228.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003353.md b/md/UBERON/53/UBERON_0003353.md index 0f10b4ad3f..83cf938e09 100644 --- a/md/UBERON/53/UBERON_0003353.md +++ b/md/UBERON/53/UBERON_0003353.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003353 * *Label* = epithelium of hindgut - * *Definition* = An epithelium that is part of a hindgut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a hindgut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of hindgut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindgut epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindgut epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of hindgut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindgut epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindgut epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003453.md b/md/UBERON/53/UBERON_0003453.md index 8936925fdb..ae2fd7c2db 100644 --- a/md/UBERON/53/UBERON_0003453.md +++ b/md/UBERON/53/UBERON_0003453.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003453 * *Label* = large intestine Peyer's patch - * *Definition* = A Peyer's patch that is part of a large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A Peyer's patch that is part of a large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Edtor notes: requires expert attention ## Synonyms - * Peyer's patch of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine Peyer's patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * solitary lymphatic follicle of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15658] - * solitary lymphoid follicle of subdivision of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15658] + * Peyer's patch of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine Peyer's patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * solitary lymphatic follicle of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15658 ] + * solitary lymphoid follicle of subdivision of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15658 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [Peyer's patch](../../UBERON/11/UBERON_0001211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003553.md b/md/UBERON/53/UBERON_0003553.md index bc61c64c1e..3f39053c22 100644 --- a/md/UBERON/53/UBERON_0003553.md +++ b/md/UBERON/53/UBERON_0003553.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003553 * *Label* = diencephalon pia mater - * *Definition* = A pia mater that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * between brain pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * between brain pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pia mater that is part of the diencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003653.md b/md/UBERON/53/UBERON_0003653.md index 06c482de0b..d126394699 100644 --- a/md/UBERON/53/UBERON_0003653.md +++ b/md/UBERON/53/UBERON_0003653.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003653 * *Label* = metatarsal bone of digit 4 - * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot digit 4 metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24505] + * foot digit 4 metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24505 ] * metatarsal 4 - * metatarsal IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000928] - * metatarsal bone digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001372] - * metatarsal bone of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metatarsal IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000928 ] + * metatarsal bone digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001372 ] + * metatarsal bone of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * toe 4 metatarsal * toe 4 metatarsus @@ -23,7 +23,7 @@ * FMA:24505 * MA:0001372 * SCTID:182139001 - * UMLS:C1709002 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone_Digit_4] + * UMLS:C1709002 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone_Digit_4 ] * ncithesaurus:Metatarsal_Bone_Digit_4 ## Subsets @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of pedal digit 4](../../UBERON/35/UBERON_0004335.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fourth metatarsal bone is smaller in size than the third; its base presents an oblique quadrilateral surface for articulation with the cuboid; a smooth facet on the medial side, divided by a ridge into an anterior portion for articulation with the third metatarsal, and a posterior portion for articulation with the third cuneiform; on the lateral side a single facet, for articulation with the fifth metatarsal[Wikipedia:Fourth_metatarsal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 4 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003853.md b/md/UBERON/53/UBERON_0003853.md index 075ff9bfc3..70f19e92af 100644 --- a/md/UBERON/53/UBERON_0003853.md +++ b/md/UBERON/53/UBERON_0003853.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003853 * *Label* = spinal cord neural crest - * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural crest that has_potential_to_developmentally_contribute_to a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neural crest spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001006] - * spinal neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001006] + * neural crest spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001006 ] + * spinal neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001006 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to developmentally contribute to](../../RO/85/RO_0002385.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) and [neural crest](../../UBERON/42/UBERON_0002342.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...)[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0003953.md b/md/UBERON/53/UBERON_0003953.md index e72d7922ba..0e0e2b6dc8 100644 --- a/md/UBERON/53/UBERON_0003953.md +++ b/md/UBERON/53/UBERON_0003953.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003953 * *Label* = posterior stroma of cornea - * *Definition* = the posterior segment of the lamellated connective tissue layer of the cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003094] + * *Definition* = the posterior segment of the lamellated connective tissue layer of the cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003094 ] ## Synonyms - * psterior stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003094] + * psterior stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003094 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004053.md b/md/UBERON/53/UBERON_0004053.md index 3a8c85aa2e..de75a379ff 100644 --- a/md/UBERON/53/UBERON_0004053.md +++ b/md/UBERON/53/UBERON_0004053.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004053 * *Label* = external male genitalia - * *Definition* = the external masculine genital organs, including the penis and scrotum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009199] + * *Definition* = the external masculine genital organs, including the penis and scrotum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009199 ] ## Synonyms - * external male genital organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003097] - * male external genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45642] - * organa genitalia masculina externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003097] + * external male genital organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003097 ] + * male external genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45642 ] + * organa genitalia masculina externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003097 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external genitalia](../../UBERON/76/UBERON_0004176.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004153.md b/md/UBERON/53/UBERON_0004153.md index c4dcbc9f77..4e776c2551 100644 --- a/md/UBERON/53/UBERON_0004153.md +++ b/md/UBERON/53/UBERON_0004153.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004153 * *Label* = ventricular septum intermedium - * *Definition* = Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003282[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_intermedium] + * *Definition* = Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003282, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_intermedium ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004253.md b/md/UBERON/53/UBERON_0004253.md index 1776d29c6e..7d98865775 100644 --- a/md/UBERON/53/UBERON_0004253.md +++ b/md/UBERON/53/UBERON_0004253.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004253 * *Label* = skin muscle - * *Definition* = A muscle organ that is part of a skin of body [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a skin of body [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: review as part of general integumentary system review - part of skin, or more generally, integumental system ## Synonyms - * muscle of integumental system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18187] - * muscle organ of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle of integumental system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18187 ] + * muscle organ of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [integumental system](../../UBERON/16/UBERON_0002416.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004353.md b/md/UBERON/53/UBERON_0004353.md index 5761636cf2..7dbba4d0cc 100644 --- a/md/UBERON/53/UBERON_0004353.md +++ b/md/UBERON/53/UBERON_0004353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004353 * *Label* = female inguinal canal - * *Definition* = An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008015[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_canal#Contents] + * *Definition* = An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008015, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_canal#Contents ] * *Comment* = AO notes: in MP, this is implicitly part of female reproductive system, but not female genitalia ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inguinal canal](../../UBERON/02/UBERON_0003702.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004453.md b/md/UBERON/53/UBERON_0004453.md index fc141c7025..bfd989ad45 100644 --- a/md/UBERON/53/UBERON_0004453.md +++ b/md/UBERON/53/UBERON_0004453.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004453 * *Label* = metacarpus region - * *Definition* = A metapodium region that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metapodium region that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: Note that along with FMA we treat this as a limb segment rather than a purely skeletal element. AO notes: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton ## Synonyms - * distal segment of hand proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24925] - * metacarpal part of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24925] + * distal segment of hand proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24925 ] + * metacarpal part of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24925 ] * metacarpal part of manus - * metacarpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24925] - * metacarpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000042] - * forelimb cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * forelimb equine cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * metacarpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24925 ] + * metacarpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000042 ] + * forelimb cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * forelimb equine cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metapodium region](../../UBERON/77/UBERON_0009877.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = metacarpal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004553.md b/md/UBERON/53/UBERON_0004553.md index ddaab2eb3e..ad7aa953f6 100644 --- a/md/UBERON/53/UBERON_0004553.md +++ b/md/UBERON/53/UBERON_0004553.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004553 * *Label* = forelimb digital artery - * *Definition* = A digital artery that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digital artery that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * digital artery of manus - * forelimb digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001953] - * wing digital artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * forelimb digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001953 ] + * wing digital artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digital artery](../../UBERON/52/UBERON_0004552.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0004753.md b/md/UBERON/53/UBERON_0004753.md index 993ed4ed58..683d67d7f8 100644 --- a/md/UBERON/53/UBERON_0004753.md +++ b/md/UBERON/53/UBERON_0004753.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004753 * *Label* = scapulocoracoid - * *Definition* = Skeletal element that consists of the scapula and the coracoid[VSAO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scapulocoracoid] + * *Definition* = Skeletal element that consists of the scapula and the coracoid[VSAO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scapulocoracoid ] * *Comment* = AO notes: ZFA defines as precursor to scapula and coracoid. Cartilage in TAO. Editor notes: todo - decide whether to create separate classes for cartilage & ossified. Wikipedia considers this absent in Therians, but if considered as a grouping of scapula and coracoid then it would be present ## Synonyms - * scapulocoracoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005002] - * coraco-scapular cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001455] - * scapulo-coracoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001455] - * scapulocoracoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001455] + * scapulocoracoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005002 ] + * coraco-scapular cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001455 ] + * scapulo-coracoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001455 ] + * scapulocoracoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001455 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pectoral fin cartilage that consists of a paired cartilaginous plate of the embryonic primary pectoral girdle and from which the scapular and coracaoid bones ossify.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = either a fusion of the scapula and coracoid (the two main bones of the shoulder girdle), or the scapula & coracoid considered as a single structural unit.[Palaeos] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of scapular area (AAO:0000935)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005053.md b/md/UBERON/53/UBERON_0005053.md index bc8f1f5e06..e88161e92e 100644 --- a/md/UBERON/53/UBERON_0005053.md +++ b/md/UBERON/53/UBERON_0005053.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005153.md b/md/UBERON/53/UBERON_0005153.md index e2c64fd002..4ca93172f8 100644 --- a/md/UBERON/53/UBERON_0005153.md +++ b/md/UBERON/53/UBERON_0005153.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005153 * *Label* = epithelial bud - * *Definition* = A bud is a protrusion that forms from an epithelial sheet by localized folding. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060572] + * *Definition* = A bud is a protrusion that forms from an epithelial sheet by localized folding. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060572 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005253.md b/md/UBERON/53/UBERON_0005253.md index feddda9fea..7f28ecb124 100644 --- a/md/UBERON/53/UBERON_0005253.md +++ b/md/UBERON/53/UBERON_0005253.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005253 * *Label* = head mesenchyme - * *Definition* = Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0683400088[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011260] + * *Definition* = Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0683400088, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011260 ] ## Synonyms - * cephalic mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011260] - * desmocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76622[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW] + * cephalic mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011260 ] + * desmocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76622, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005353.md b/md/UBERON/53/UBERON_0005353.md index 21b6293c7a..a983122b24 100644 --- a/md/UBERON/53/UBERON_0005353.md +++ b/md/UBERON/53/UBERON_0005353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005353 * *Label* = spleen perifollicular zone - * *Definition* = the compartment located between the marginal zone and the red pulp harboring scattered B and T lymphocytes[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010245] + * *Definition* = the compartment located between the marginal zone and the red pulp harboring scattered B and T lymphocytes[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010245 ] * *Comment* = todo - check spleen marginal sinus ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005453.md b/md/UBERON/53/UBERON_0005453.md index 689cf42b67..fd51409fa1 100644 --- a/md/UBERON/53/UBERON_0005453.md +++ b/md/UBERON/53/UBERON_0005453.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005453 * *Label* = inferior mesenteric ganglion - * *Definition* = a ganglion located near where the inferior mesenteric artery branches from the abdominal aorta[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_ganglion] + * *Definition* = a ganglion located near where the inferior mesenteric artery branches from the abdominal aorta[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_ganglion ] ## Synonyms - * ganglion mesentericum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion mesentericum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005653.md b/md/UBERON/53/UBERON_0005653.md index 6bc24553eb..e21cff0f7d 100644 --- a/md/UBERON/53/UBERON_0005653.md +++ b/md/UBERON/53/UBERON_0005653.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005653 * *Label* = upper jaw molar epithelium - * *Definition* = A dental epithelium that is part of a upper jaw molar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dental epithelium that is part of a upper jaw molar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dental epithelium](../../UBERON/43/UBERON_0003843.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw molar](../../UBERON/66/UBERON_0003666.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005753.md b/md/UBERON/53/UBERON_0005753.md index 319f35ff3f..946f5abe80 100644 --- a/md/UBERON/53/UBERON_0005753.md +++ b/md/UBERON/53/UBERON_0005753.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005753 * *Label* = caudal part of nephrogenic cord - * *Definition* = the metanephros develops from the most caudal part of the nephrogenic cord that is itself derived from the intermediate plate mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] + * *Definition* = the metanephros develops from the most caudal part of the nephrogenic cord that is itself derived from the intermediate plate mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] ## Synonyms - * caudal portion of nephrogenic cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caudal region of nephrogenic cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rear part of nephrogenic cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rear portion of nephrogenic cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephros#Metanephros] + * caudal portion of nephrogenic cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caudal region of nephrogenic cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rear part of nephrogenic cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rear portion of nephrogenic cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephros#Metanephros ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005853.md b/md/UBERON/53/UBERON_0005853.md index f66aa74320..784823c4fd 100644 --- a/md/UBERON/53/UBERON_0005853.md +++ b/md/UBERON/53/UBERON_0005853.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0005953.md b/md/UBERON/53/UBERON_0005953.md index b5a2f720d0..e158159203 100644 --- a/md/UBERON/53/UBERON_0005953.md +++ b/md/UBERON/53/UBERON_0005953.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005953 * *Label* = outflow part of right ventricle - * *Definition* = Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7216] + * *Definition* = Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7216 ] ## Synonyms * RVOT - * conus arteriosus (infundibulum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7216] - * infundibulum of right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7216] - * outflow tract of right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7216] - * pulmonary conus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7216] + * conus arteriosus (infundibulum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7216 ] + * infundibulum of right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7216 ] + * outflow tract of right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7216 ] + * pulmonary conus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7216 ] * right ventricular outflow tract - * infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conus_arteriosus] + * infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conus_arteriosus ] ## Cross-references * FMA:7216 * SCTID:244379003 - * UMLS:C1881209 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Infundibulum] + * UMLS:C1881209 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Infundibulum ] * ncithesaurus:Infundibulum ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract of ventricle](../../UBERON/37/UBERON_0005337.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006253.md b/md/UBERON/53/UBERON_0006253.md index 27d9fc9a40..928383a54d 100644 --- a/md/UBERON/53/UBERON_0006253.md +++ b/md/UBERON/53/UBERON_0006253.md @@ -6,9 +6,9 @@ ## Synonyms - * intraretinal space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000889] - * intraretinal space of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17170] - * retina intraretinal space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000534] + * intraretinal space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000889 ] + * intraretinal space of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17170 ] + * retina intraretinal space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000534 ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The space separating the outer pigment epithelium and the inner neural retina of the optic cup and of the retina. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006353.md b/md/UBERON/53/UBERON_0006353.md index f55ef07260..c9154e78d3 100644 --- a/md/UBERON/53/UBERON_0006353.md +++ b/md/UBERON/53/UBERON_0006353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006353 * *Label* = principal vein of hindlimb - * *Definition* = A prinicipal vein of limb that is part of a hindlimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A prinicipal vein of limb that is part of a hindlimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [prinicipal vein of limb](../../UBERON/43/UBERON_0006443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006453.md b/md/UBERON/53/UBERON_0006453.md index 9281178e65..dd3f421846 100644 --- a/md/UBERON/53/UBERON_0006453.md +++ b/md/UBERON/53/UBERON_0006453.md @@ -6,16 +6,16 @@ ## Synonyms - * T5 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1383] - * fifth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1383] - * t5 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71171] + * T5 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1383 ] + * fifth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1383 ] + * t5 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71171 ] ## Cross-references * FMA:71171 * NIF_GrossAnatomy:birnlex_1383 * SCTID:278767002 - * UMLS:C0457863 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1383] + * UMLS:C0457863 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1383 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006553.md b/md/UBERON/53/UBERON_0006553.md index 15bec6d23b..f92bfa19a3 100644 --- a/md/UBERON/53/UBERON_0006553.md +++ b/md/UBERON/53/UBERON_0006553.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006553 * *Label* = renal duct - * *Definition* = A tube in the kidney that collect and transport urine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-071029-9] + * *Definition* = A tube in the kidney that collect and transport urine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-071029-9 ] * *Comment* = in ZFA this is defined as part of mesonephros ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006653.md b/md/UBERON/53/UBERON_0006653.md index a3168f1b14..d66f85ee0b 100644 --- a/md/UBERON/53/UBERON_0006653.md +++ b/md/UBERON/53/UBERON_0006653.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006653 * *Label* = glans clitoris - * *Definition* = Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003117[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_glans] + * *Definition* = Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003117, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_glans ] ## Synonyms - * clitoris glans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19999] - * glans of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19999] - * glans clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_glans] - * glans clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_glans] + * clitoris glans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19999 ] + * glans of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19999 ] + * glans clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_glans ] + * glans clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_glans ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:30829 * FMA:19999 * SCTID:362241002 - * UMLS:C0227769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glans_Clitoris] + * UMLS:C0227769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glans_Clitoris ] * Wikipedia:Clitoral_glans * http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif * ncithesaurus:Glans_Clitoris @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006853.md b/md/UBERON/53/UBERON_0006853.md index c5714c1f76..879357ba1a 100644 --- a/md/UBERON/53/UBERON_0006853.md +++ b/md/UBERON/53/UBERON_0006853.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006853 * *Label* = renal cortex tubule - * *Definition* = A region of nephron tubule that is part of a cortex of kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A region of nephron tubule that is part of a cortex of kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney cortex tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002609] - * cortical tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002609] + * kidney cortex tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002609 ] + * cortical tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002609 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [region of nephron tubule](../../UBERON/85/UBERON_0007685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0006953.md b/md/UBERON/53/UBERON_0006953.md index 770809d02f..fc3c11084b 100644 --- a/md/UBERON/53/UBERON_0006953.md +++ b/md/UBERON/53/UBERON_0006953.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006953 * *Label* = ejaculatory duct epithelium - * *Definition* = The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:1238970] + * *Definition* = The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:1238970 ] * *Comment* = TODO: split off insect classes ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ejaculatory duct](../../UBERON/99/UBERON_0000999.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0007153.md b/md/UBERON/53/UBERON_0007153.md index f7d4d64846..776c42726b 100644 --- a/md/UBERON/53/UBERON_0007153.md +++ b/md/UBERON/53/UBERON_0007153.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0007653.md b/md/UBERON/53/UBERON_0007653.md index a97ad96a9e..7c1644c947 100644 --- a/md/UBERON/53/UBERON_0007653.md +++ b/md/UBERON/53/UBERON_0007653.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007653 * *Label* = capillary loop nephron - * *Definition* = Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO ## Synonyms - * developing capillary loop stage nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28506] - * stage III nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html] + * developing capillary loop stage nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28506 ] + * stage III nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0007753.md b/md/UBERON/53/UBERON_0007753.md index 25abe65090..bc2c2ce92c 100644 --- a/md/UBERON/53/UBERON_0007753.md +++ b/md/UBERON/53/UBERON_0007753.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007753 * *Label* = metatarsophalangeal joint of pedal digit 2 - * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note the name of the structure in EMAPA is incorrect ## Synonyms - * metatarsophalangeal joint of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35231] - * metatarsophalangeal joint of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35231[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsophalangeal joint of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35231 ] + * metatarsophalangeal joint of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35231, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pedal digit 2](../../UBERON/16/UBERON_0004316.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0008253.md b/md/UBERON/53/UBERON_0008253.md index b1aa2e334b..c84f731162 100644 --- a/md/UBERON/53/UBERON_0008253.md +++ b/md/UBERON/53/UBERON_0008253.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008253 * *Label* = Aristotle's lantern - * *Definition* = Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001923[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aristotle's_lantern] + * *Definition* = Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001923, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aristotle's_lantern ] ## Synonyms - * Aristotles lantern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001923] + * Aristotles lantern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001923 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0008453.md b/md/UBERON/53/UBERON_0008453.md index 5ccd0295f8..f25289d0c8 100644 --- a/md/UBERON/53/UBERON_0008453.md +++ b/md/UBERON/53/UBERON_0008453.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008453 * *Label* = rectus capitis anterior - * *Definition* = The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] + * *Definition* = The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] ## Synonyms - * anterior rectus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46312] - * rectus capitis anterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * anterior rectus capitis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * anterior vertebral muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * musculus rectus capitis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recti capitis anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * rectus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * rectus capitis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * rectus capitus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] - * rectus capitus anterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_anterior_muscle] + * anterior rectus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46312 ] + * rectus capitis anterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * anterior rectus capitis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * anterior vertebral muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * musculus rectus capitis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recti capitis anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * rectus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * rectus capitis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * rectus capitus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] + * rectus capitus anterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_anterior_muscle ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0008853.md b/md/UBERON/53/UBERON_0008853.md index f5c23ff78a..215188b7c3 100644 --- a/md/UBERON/53/UBERON_0008853.md +++ b/md/UBERON/53/UBERON_0008853.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008853 * *Label* = parietal yolk sac - * *Definition* = tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011203[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:1150659[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21123814] + * *Definition* = tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011203, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:1150659, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21123814 ] ## Synonyms - * primary yolk sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011203] + * primary yolk sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011203 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0008953.md b/md/UBERON/53/UBERON_0008953.md index b424e29931..efb52c6ba6 100644 --- a/md/UBERON/53/UBERON_0008953.md +++ b/md/UBERON/53/UBERON_0008953.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008953 * *Label* = lower lobe of left lung - * *Definition* = A lower lobe of lung that is part of a left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lower lobe of lung that is part of a left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inferior lobe of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7371] - * left lower lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7371] - * left lower lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7371] - * left lung caudal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000945] - * lobus inferior (pulmo sinister) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7371] - * lobus inferior pulmonis sinistri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior lobe of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7371 ] + * left lower lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7371 ] + * left lower lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7371 ] + * left lung caudal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000945 ] + * lobus inferior (pulmo sinister) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7371 ] + * lobus inferior pulmonis sinistri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * EHDAA:4949 * FMA:7371 * SCTID:361989001 - * UMLS:C1261077 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Lobe_of_the_Left_Lung] + * UMLS:C1261077 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Lobe_of_the_Left_Lung ] * galen:LowerLobeOfLeftLung * ncithesaurus:Lower_Lobe_of_the_Left_Lung @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lower lobe of lung](../../UBERON/49/UBERON_0008949.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009053.md b/md/UBERON/53/UBERON_0009053.md index 1b98ff5104..ccd43236c2 100644 --- a/md/UBERON/53/UBERON_0009053.md +++ b/md/UBERON/53/UBERON_0009053.md @@ -6,14 +6,14 @@ ## Synonyms - * dorsal nucleus of trapezoid body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2575] + * dorsal nucleus of trapezoid body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2575 ] ## Cross-references * NIF_GrossAnatomy:birnlex_2575 * SCTID:369021001 - * UMLS:C0228438 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2575] - * UMLS:C1289450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2575] + * UMLS:C0228438 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2575 ] + * UMLS:C1289450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2575 ] ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009553.md b/md/UBERON/53/UBERON_0009553.md index 7004aba863..6932ab3377 100644 --- a/md/UBERON/53/UBERON_0009553.md +++ b/md/UBERON/53/UBERON_0009553.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009553 * *Label* = distal segment of pedal digit - * *Definition* = A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A segment of the pedal digit containing the distal phalanx. Note this class represents a digit segment and thus includes tissues in addition to bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * hindlimb digit tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/nature10346] - * tip of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * toe digit tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1038/nature10346] - * toe distal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * P3 segment of pedal digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * distalmost part of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * hindlimb digit tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/nature10346 ] + * tip of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * toe digit tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1038/nature10346 ] + * toe distal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * P3 segment of pedal digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * distalmost part of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal segment of digit](../../UBERON/51/UBERON_0009551.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009653.md b/md/UBERON/53/UBERON_0009653.md index 45d69fbf7d..51da8a47a1 100644 --- a/md/UBERON/53/UBERON_0009653.md +++ b/md/UBERON/53/UBERON_0009653.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009653 * *Label* = trachea basement membrane - * *Definition* = A basement membrane that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basement membrane that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0001854 - * UMLS:C1710455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Basement_Membrane] + * UMLS:C1710455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Basement_Membrane ] * ncithesaurus:Trachea_Basement_Membrane ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basement membrane of epithelium](../../UBERON/69/UBERON_0005769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009753.md b/md/UBERON/53/UBERON_0009753.md index 11fb321ac8..e341db6585 100644 --- a/md/UBERON/53/UBERON_0009753.md +++ b/md/UBERON/53/UBERON_0009753.md @@ -6,8 +6,8 @@ ## Synonyms - * adrenal cortical region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69086] - * region of adrenal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69086] + * adrenal cortical region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69086 ] + * region of adrenal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69086 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009853.md b/md/UBERON/53/UBERON_0009853.md index afa1d888cc..499931717f 100644 --- a/md/UBERON/53/UBERON_0009853.md +++ b/md/UBERON/53/UBERON_0009853.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009853 * *Label* = body of uterus - * *Definition* = that part of the uterus above the isthmus and below the orifices of the uterine tubes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/corpus+uteri] + * *Definition* = that part of the uterus above the isthmus and below the orifices of the uterine tubes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/corpus+uteri ] ## Synonyms - * corpus uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * uterine body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17739] - * uterine corpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17739] + * corpus uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * uterine body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17739 ] + * uterine corpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17739 ] ## Cross-references @@ -17,7 +17,7 @@ * EFO:0000382 * FMA:17739 * SCTID:279878007 - * UMLS:C0227813 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpus_Uteri] + * UMLS:C0227813 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpus_Uteri ] * ncithesaurus:Corpus_Uteri ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0009953.md b/md/UBERON/53/UBERON_0009953.md index ac426c7a98..e5c4bfab15 100644 --- a/md/UBERON/53/UBERON_0009953.md +++ b/md/UBERON/53/UBERON_0009953.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009953 * *Label* = post-embryonic organism - * *Definition* = A multi-cellular organism that existence_starts_with a post-embryonic stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-cellular organism that existence_starts_with a post-embryonic stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * TS28 mouse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002405] - * post-hatching organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * post-natal organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * postnatal mouse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002405] + * TS28 mouse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002405 ] + * post-hatching organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * post-natal organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * postnatal mouse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002405 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_with](../../core#existence/th/core#existence_starts_with.md) some [post-embryonic stage](../../UBERON/92/UBERON_0000092.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010053.md b/md/UBERON/53/UBERON_0010053.md index 0e4aaeca3a..bdecb98c32 100644 --- a/md/UBERON/53/UBERON_0010053.md +++ b/md/UBERON/53/UBERON_0010053.md @@ -20,15 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable of part of](../../RO/16/RO_0002216.md) some [echolocation](../../GO/59/GO_0050959.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010153.md b/md/UBERON/53/UBERON_0010153.md index bf2605a882..4589efe5f1 100644 --- a/md/UBERON/53/UBERON_0010153.md +++ b/md/UBERON/53/UBERON_0010153.md @@ -6,7 +6,7 @@ ## Synonyms - * rumen papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * rumen papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010253.md b/md/UBERON/53/UBERON_0010253.md index 341e78b7c1..ce68236653 100644 --- a/md/UBERON/53/UBERON_0010253.md +++ b/md/UBERON/53/UBERON_0010253.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010253 * *Label* = 1st arch maxillary mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch maxillary mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch maxillary mesenchyme](../../UBERON/45/UBERON_0010045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010753.md b/md/UBERON/53/UBERON_0010753.md index 181219dd12..6b4f433061 100644 --- a/md/UBERON/53/UBERON_0010753.md +++ b/md/UBERON/53/UBERON_0010753.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010753 * *Label* = lymph node secondary follicle - * *Definition* = A secondary follicle that is located in a lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * *Definition* = A secondary follicle that is located in a lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) and [secondary nodular lymphoid tissue](../../UBERON/45/UBERON_0001745.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010853.md b/md/UBERON/53/UBERON_0010853.md index b7acd91d0f..a3756afe30 100644 --- a/md/UBERON/53/UBERON_0010853.md +++ b/md/UBERON/53/UBERON_0010853.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010853 * *Label* = capitulum of humerus - * *Definition* = In human anatomy of the arm, the lateral portion of the articular surface of the humerus consists of a smooth, rounded eminence, named the capitulum of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitulum_of_the_humerus] + * *Definition* = In human anatomy of the arm, the lateral portion of the articular surface of the humerus consists of a smooth, rounded eminence, named the capitulum of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitulum_of_the_humerus ] * *Comment* = TODO - check AAO. Taxon notes: In birds, where forelimb anatomy has adaptation for flight, its functional if not ontogenetic equivalent is the dorsal condyle of the humerus[WP] ## Synonyms - * humeral capitulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23373] - * capitellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitulum_of_the_humerus] - * capitulum humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitulum_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * capitulum of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitulum_of_the_humerus] - * dorsal condyle of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capitulum_of_the_humerus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * humeral capitulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23373 ] + * capitellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitulum_of_the_humerus ] + * capitulum humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitulum_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * capitulum of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitulum_of_the_humerus ] + * dorsal condyle of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capitulum_of_the_humerus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0010953.md b/md/UBERON/53/UBERON_0010953.md index c58ebcde03..f53ca4b812 100644 --- a/md/UBERON/53/UBERON_0010953.md +++ b/md/UBERON/53/UBERON_0010953.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010953 * *Label* = nasalis muscle - * *Definition* = The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into "Compressor nasalis" and "Dilator nasalis". [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasalis_muscle] + * *Definition* = The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into "Compressor nasalis" and "Dilator nasalis". [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasalis_muscle ] ## Synonyms - * nasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46770] - * compressor naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasalis_muscle] - * compressor narium minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasalis_muscle] - * compressor nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasalis_muscle] - * musculus nasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasalis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46770 ] + * compressor naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasalis_muscle ] + * compressor narium minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasalis_muscle ] + * compressor nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasalis_muscle ] + * musculus nasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasalis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0011153.md b/md/UBERON/53/UBERON_0011153.md index 61e120757a..f3d5ed852b 100644 --- a/md/UBERON/53/UBERON_0011153.md +++ b/md/UBERON/53/UBERON_0011153.md @@ -6,9 +6,9 @@ ## Synonyms - * ventral hyoid arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001402] + * ventral hyoid arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001402 ] * ventral pharyngeal arch 2 skeleton - * ventral visceral arch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001402] + * ventral visceral arch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001402 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0011253.md b/md/UBERON/53/UBERON_0011253.md index 35f45fbe50..989b212909 100644 --- a/md/UBERON/53/UBERON_0011253.md +++ b/md/UBERON/53/UBERON_0011253.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011253 * *Label* = gland of anal sac - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_gland] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_gland ] ## Synonyms @@ -14,7 +14,7 @@ ## Cross-references * SCTID:91610001 - * UMLS:C0162322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Gland] + * UMLS:C0162322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Gland ] * Wikipedia:Anal_gland * ncithesaurus:Anal_Gland @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal sac](../../UBERON/78/UBERON_0008978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0011653.md b/md/UBERON/53/UBERON_0011653.md index a7dcfe30aa..ad98ab44f9 100644 --- a/md/UBERON/53/UBERON_0011653.md +++ b/md/UBERON/53/UBERON_0011653.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011653 * *Label* = diapophysis of rib - * *Definition* = Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000706] + * *Definition* = Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000706 ] ## Synonyms - * diapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000706] + * diapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000706 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0011953.md b/md/UBERON/53/UBERON_0011953.md index fcc567095b..04ae9410b6 100644 --- a/md/UBERON/53/UBERON_0011953.md +++ b/md/UBERON/53/UBERON_0011953.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011953 * *Label* = stomach glandular region - * *Definition* = A stomach region that has_part a stomach glandular epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stomach region that has_part a stomach glandular epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * EMAPA:18896 * MA:0001613 * SCTID:27633001 - * UMLS:C0227197 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glandular_Stomach] + * UMLS:C0227197 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glandular_Stomach ] * ncithesaurus:Glandular_Stomach ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [stomach glandular epithelium](../../UBERON/24/UBERON_0006924.md) and [stomach region](../../UBERON/34/UBERON_0009034.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011953 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0012253.md b/md/UBERON/53/UBERON_0012253.md index 9bd4f3ff3a..da09991678 100644 --- a/md/UBERON/53/UBERON_0012253.md +++ b/md/UBERON/53/UBERON_0012253.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012253 * *Label* = cervical squamo-columnar junction - * *Definition* = Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx] + * *Definition* = Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.asccp.org/practicemanagement/cervix/histologyofthenormalcervix/tabid/5842/default.aspx ] * *Comment* = Site of 90% of lower genital tract neoplasia. This junction is presumed, but not proven, to be the embryologic junction of the Mllerian and urogenital sinus epithelia. ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [cervix glandular epithelium](../../UBERON/50/UBERON_0012250.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [cervix squamous epithelium](../../UBERON/22/UBERON_0006922.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012253 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0012353.md b/md/UBERON/53/UBERON_0012353.md index c7e37e434b..79b697df06 100644 --- a/md/UBERON/53/UBERON_0012353.md +++ b/md/UBERON/53/UBERON_0012353.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012353 * *Label* = fin skeleton - * *Definition* = Skeletal subdivision consisting of all the skeletal elements in a single fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Skeletal subdivision consisting of all the skeletal elements in a single fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [fin](../../UBERON/97/UBERON_0008897.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012353 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0012453.md b/md/UBERON/53/UBERON_0012453.md index e04280e4ae..00e66f2fa2 100644 --- a/md/UBERON/53/UBERON_0012453.md +++ b/md/UBERON/53/UBERON_0012453.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012453 * *Label* = nerve ending - * *Definition* = Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.550] + * *Definition* = Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.550 ] * *Comment* = This class and subclasses may be ceded to GO ## Synonyms - * nerve ending [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.550] + * nerve ending [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.550 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0013153.md b/md/UBERON/53/UBERON_0013153.md index bcf9f65ef7..498550aac7 100644 --- a/md/UBERON/53/UBERON_0013153.md +++ b/md/UBERON/53/UBERON_0013153.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013153 * *Label* = arachnoid villus - * *Definition* = Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] + * *Definition* = Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] ## Synonyms - * arachnoid granulations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * arachnoid villi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * arachnoid villus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * arachnoidal granulations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * glandulae pacchioni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * glandul pacchioni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * granulationes arachnoideales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * pacchioni%27s granulations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * pacchionian bodies [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * pacchionian glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] - * paccini%27s granulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_granulation] + * arachnoid granulations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * arachnoid villi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * arachnoid villus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * arachnoidal granulations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * glandulae pacchioni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * glandul pacchioni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * granulationes arachnoideales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * pacchioni%27s granulations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * pacchionian bodies [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * pacchionian glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] + * paccini%27s granulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_granulation ] ## Cross-references * FMA:83980 - * UMLS:C0228130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arachnoid_Villus] + * UMLS:C0228130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arachnoid_Villus ] * Wikipedia:Arachnoid_granulation * ncithesaurus:Arachnoid_Villus @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Arachnoid granulations (or arachnoid villi) are small protrusions of the arachnoid (the thin second layer covering the brain) through the dura mater (the thick outer layer). They protrude into the venous sinuses of the brain, and allow cerebrospinal fluid (CSF) to exit the brain, and enter the blood stream. Largest granulations lie along the superior sagittal sinus, a large venous space running from front to back along the centre of the head (on the inside of the skull). They are, however, present along other dural sinuses as well. Smaller granulations are called villi, large calcified ones are referred to as pacchionian bodies[Wikipedia:Arachnoid_granulation]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013153 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0013553.md b/md/UBERON/53/UBERON_0013553.md index e392f918f5..bcc49008b7 100644 --- a/md/UBERON/53/UBERON_0013553.md +++ b/md/UBERON/53/UBERON_0013553.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013553 * *Label* = Brodmann (1909) area 22 - * *Definition* = Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_22] + * *Definition* = Brodmann area 22 is one of Brodmann's cytologically defined regions of the brain. It is involved in auditory processing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_22 ] ## Synonyms - * B09-22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1753] - * Brodmann (1909) area 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1753] - * Brodmann area 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68619] - * Brodmann area 22, superior temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1753] - * Superior temporal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68619] - * area 22 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68619] - * area 22 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1753] - * area temporalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1753] - * area temporalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_22[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1753[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 22 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1017] - * brodmann's area 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1017] + * B09-22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1753 ] + * Brodmann (1909) area 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1753 ] + * Brodmann area 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68619 ] + * Brodmann area 22, superior temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1753 ] + * Superior temporal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68619 ] + * area 22 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68619 ] + * area 22 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1753 ] + * area temporalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1753 ] + * area temporalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_22, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1753, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 22 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1017 ] + * brodmann's area 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1017 ] ## Cross-references * FMA:68619 * NIF_GrossAnatomy:birnlex_1753 - * NeuroNames:1017 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1753] - * UMLS:C1272540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1753] + * NeuroNames:1017 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1753 ] + * UMLS:C1272540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1753 ] * Wikipedia:Brodmann_area_22 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0013653.md b/md/UBERON/53/UBERON_0013653.md index dce10c1740..b58f806566 100644 --- a/md/UBERON/53/UBERON_0013653.md +++ b/md/UBERON/53/UBERON_0013653.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013653 * *Label* = velar skeleton - * *Definition* = Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780226315683[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780226315683, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * skeleton of velum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * skeleton of velum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [respiratory velum](../../UBERON/21/UBERON_0012121.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7762 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013653 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0013753.md b/md/UBERON/53/UBERON_0013753.md index 5030623dd5..a7f558c1f5 100644 --- a/md/UBERON/53/UBERON_0013753.md +++ b/md/UBERON/53/UBERON_0013753.md @@ -6,10 +6,10 @@ ## Synonyms - * caput ossis metacarpi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * distal end of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33798] - * head of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33798] - * lower end of metacarpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33798] + * caput ossis metacarpi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * distal end of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33798 ] + * head of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33798 ] + * lower end of metacarpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33798 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0014453.md b/md/UBERON/53/UBERON_0014453.md index eb0fcfc993..f192eb1a42 100644 --- a/md/UBERON/53/UBERON_0014453.md +++ b/md/UBERON/53/UBERON_0014453.md @@ -6,7 +6,7 @@ ## Synonyms - * palatal gustatory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * palatal gustatory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gustatory epithelium](../../UBERON/26/UBERON_0002926.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof of mouth](../../UBERON/75/UBERON_0007375.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014453 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0014553.md b/md/UBERON/53/UBERON_0014553.md index 8734375b8b..8d34ef1410 100644 --- a/md/UBERON/53/UBERON_0014553.md +++ b/md/UBERON/53/UBERON_0014553.md @@ -6,8 +6,8 @@ ## Synonyms - * CA3 part of stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4117[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA3 stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4117] + * CA3 part of stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4117, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA3 stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4117 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum oriens](../../UBERON/71/UBERON_0005371.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014553 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0014753.md b/md/UBERON/53/UBERON_0014753.md index 73558f2a15..37789192a3 100644 --- a/md/UBERON/53/UBERON_0014753.md +++ b/md/UBERON/53/UBERON_0014753.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014753 * *Label* = P3 area of pallium (Myxiniformes) - * *Definition* = Area directly deep to the P2 area of pallium in hagfishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Area directly deep to the P2 area of pallium in hagfishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014753 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0014853.md b/md/UBERON/53/UBERON_0014853.md index 5287a61c72..156c72607f 100644 --- a/md/UBERON/53/UBERON_0014853.md +++ b/md/UBERON/53/UBERON_0014853.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014853 * *Label* = commissural leaflet of mitral valve - * *Definition* = Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:223086] + * *Definition* = Leaflet of mitral valve which is attached to the commissural chorda tendinea of left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:223086 ] ## Synonyms - * commissural cusp of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:223086] + * commissural cusp of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:223086 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014853 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_0015053.md b/md/UBERON/53/UBERON_0015053.md index 77039d3220..cb7661f66d 100644 --- a/md/UBERON/53/UBERON_0015053.md +++ b/md/UBERON/53/UBERON_0015053.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015053 * *Label* = humerus endochondral element - * *Definition* = A humerus bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A humerus bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * humerus element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * humerus skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * humerus element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * humerus skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [humerus cartilage element](../../UBERON/45/UBERON_0006245.md)or[humerus pre-cartilage condensation](../../UBERON/46/UBERON_0006246.md)or[humerus](../../UBERON/76/UBERON_0000976.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015053 + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2000753.md b/md/UBERON/53/UBERON_2000753.md index bdac99f9ff..2622ad2023 100644 --- a/md/UBERON/53/UBERON_2000753.md +++ b/md/UBERON/53/UBERON_2000753.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000753[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000753, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/53/UBERON_2000853.md b/md/UBERON/53/UBERON_2000853.md index ffdeaa9ffa..625ef150f1 100644 --- a/md/UBERON/53/UBERON_2000853.md +++ b/md/UBERON/53/UBERON_2000853.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000853 * *Label* = somite 18 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 18 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2000953.md b/md/UBERON/53/UBERON_2000953.md index 8b77f05a3d..9619eb892f 100644 --- a/md/UBERON/53/UBERON_2000953.md +++ b/md/UBERON/53/UBERON_2000953.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000953 * *Label* = sclerotome somite 12 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001053.md b/md/UBERON/53/UBERON_2001053.md index b38637a9a9..e32c59d43b 100644 --- a/md/UBERON/53/UBERON_2001053.md +++ b/md/UBERON/53/UBERON_2001053.md @@ -6,7 +6,7 @@ ## Synonyms - * PICA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001053] + * PICA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001053 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001253.md b/md/UBERON/53/UBERON_2001253.md index b893ca8b61..1cd77cd7b1 100644 --- a/md/UBERON/53/UBERON_2001253.md +++ b/md/UBERON/53/UBERON_2001253.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001253 * *Label* = neural arch 2 - * *Definition* = Neural arch that is the second after the neurocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural arch that is the second after the neurocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001553.md b/md/UBERON/53/UBERON_2001553.md index 5167e5021a..6651072548 100644 --- a/md/UBERON/53/UBERON_2001553.md +++ b/md/UBERON/53/UBERON_2001553.md @@ -6,9 +6,9 @@ ## Synonyms - * intercalarium anterior process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Bird and Mabee 2003] - * intercalarium horizontal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Fink and Fink 1981] - * manubrium incudus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Bird 2003] + * intercalarium anterior process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Bird and Mabee 2003 ] + * intercalarium horizontal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Fink and Fink 1981 ] + * manubrium incudus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Bird 2003 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001653.md b/md/UBERON/53/UBERON_2001653.md index 24464c29e7..c0fd2eb5c3 100644 --- a/md/UBERON/53/UBERON_2001653.md +++ b/md/UBERON/53/UBERON_2001653.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001653 * *Label* = pharyngobranchial 3 tooth - * *Definition* = Tooth that is part of the pharyngobranchial 3 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is part of the pharyngobranchial 3 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001753.md b/md/UBERON/53/UBERON_2001753.md index 2f3af21cdf..62eec70131 100644 --- a/md/UBERON/53/UBERON_2001753.md +++ b/md/UBERON/53/UBERON_2001753.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001753 * *Label* = posttemporal fossa - * *Definition* = Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-192] + * *Definition* = Fossa where the exoccipital forms the medial portion and the epioccipital forms the lateral margin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-192 ] * *Comment* = Chen 1994 gives these two synonyms: "temporal fossa", Gauba 1967; and "temporal groove", Mahajan 1966. ## Synonyms - * temporal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001753] - * temporal fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001753] + * temporal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001753 ] + * temporal fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001753 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001853.md b/md/UBERON/53/UBERON_2001853.md index cad43d22e1..b2ad725f14 100644 --- a/md/UBERON/53/UBERON_2001853.md +++ b/md/UBERON/53/UBERON_2001853.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001853 * *Label* = postcleithrum 2 - * *Definition* = Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2001953.md b/md/UBERON/53/UBERON_2001953.md index b73a75d916..49a6d0573f 100644 --- a/md/UBERON/53/UBERON_2001953.md +++ b/md/UBERON/53/UBERON_2001953.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2002053.md b/md/UBERON/53/UBERON_2002053.md index 390f83dc4f..a63f4b4033 100644 --- a/md/UBERON/53/UBERON_2002053.md +++ b/md/UBERON/53/UBERON_2002053.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002053 * *Label* = bony plate - * *Definition* = Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * armor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002053] - * armor plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002053] - * osteoderms [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002053] + * armor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002053 ] + * armor plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002053 ] + * osteoderms [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002053 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2002253.md b/md/UBERON/53/UBERON_2002253.md index 6135a7de92..1424348a87 100644 --- a/md/UBERON/53/UBERON_2002253.md +++ b/md/UBERON/53/UBERON_2002253.md @@ -6,7 +6,7 @@ ## Synonyms - * pyloric appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002253] + * pyloric appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002253 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0008248 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/53/UBERON_2005053.md b/md/UBERON/53/UBERON_2005053.md index 895361627a..48193c3d0d 100644 --- a/md/UBERON/53/UBERON_2005053.md +++ b/md/UBERON/53/UBERON_2005053.md @@ -6,7 +6,7 @@ ## Synonyms - * NCA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005053] + * NCA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005053 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_2007053.md b/md/UBERON/53/UBERON_2007053.md index bca1337e10..1bb14cd3e3 100644 --- a/md/UBERON/53/UBERON_2007053.md +++ b/md/UBERON/53/UBERON_2007053.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2007053 * *Label* = dorsal adductor hyomandibulae - * *Definition* = Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-020703-2] + * *Definition* = Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-020703-2 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3000453.md b/md/UBERON/53/UBERON_3000453.md index 2a51522fe1..68b356604b 100644 --- a/md/UBERON/53/UBERON_3000453.md +++ b/md/UBERON/53/UBERON_3000453.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3000653.md b/md/UBERON/53/UBERON_3000653.md index 310fe01ed8..6a2726cb80 100644 --- a/md/UBERON/53/UBERON_3000653.md +++ b/md/UBERON/53/UBERON_3000653.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000653 * *Label* = pars glenoidalis of quadratojugal - * *Definition* = Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3000753.md b/md/UBERON/53/UBERON_3000753.md index a612bee96b..642c066daf 100644 --- a/md/UBERON/53/UBERON_3000753.md +++ b/md/UBERON/53/UBERON_3000753.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000753 * *Label* = pars glenoidalis of scapula - * *Definition* = Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3000953.md b/md/UBERON/53/UBERON_3000953.md index 969d8d86de..100742a45a 100644 --- a/md/UBERON/53/UBERON_3000953.md +++ b/md/UBERON/53/UBERON_3000953.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000953 * *Label* = ceratobranchials II--IV - * *Definition* = Paired bars that articulate with hypobranchial II. Reduction of loss of these elements is common in salamanders. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired bars that articulate with hypobranchial II. Reduction of loss of these elements is common in salamanders. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * epibranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000953] + * epibranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000953 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3010453.md b/md/UBERON/53/UBERON_3010453.md index ad7fa5495f..a9c7990cb6 100644 --- a/md/UBERON/53/UBERON_3010453.md +++ b/md/UBERON/53/UBERON_3010453.md @@ -6,7 +6,7 @@ ## Synonyms - * VMZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010453] + * VMZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010453 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_3010553.md b/md/UBERON/53/UBERON_3010553.md index 3c0571326d..316097280f 100644 --- a/md/UBERON/53/UBERON_3010553.md +++ b/md/UBERON/53/UBERON_3010553.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010553 * *Label* = obsolete blastoderm cell - * *Definition* = An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000353 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/53/UBERON_3010653.md b/md/UBERON/53/UBERON_3010653.md index b9e7456187..ad2d38b3b1 100644 --- a/md/UBERON/53/UBERON_3010653.md +++ b/md/UBERON/53/UBERON_3010653.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010653 * *Label* = ramus nasalis medialis - * *Definition* = First branch gives rise to two ramules that border the naris and innervate the surrounding tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = First branch gives rise to two ramules that border the naris and innervate the surrounding tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_4000053.md b/md/UBERON/53/UBERON_4000053.md index 9d0ea6bd4c..2febe621a2 100644 --- a/md/UBERON/53/UBERON_4000053.md +++ b/md/UBERON/53/UBERON_4000053.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000053 * *Label* = vacuolated notochordal tissue - * *Definition* = Connective tissue that is matrix-poor with large number of vacuolated cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Connective tissue that is matrix-poor with large number of vacuolated cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * notochord proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * notochord proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_4200053.md b/md/UBERON/53/UBERON_4200053.md index 13a2579f72..6270a38005 100644 --- a/md/UBERON/53/UBERON_4200053.md +++ b/md/UBERON/53/UBERON_4200053.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/53/UBERON_4200153.md b/md/UBERON/53/UBERON_4200153.md index 44f107cafa..3953aa4ce8 100644 --- a/md/UBERON/53/UBERON_4200153.md +++ b/md/UBERON/53/UBERON_4200153.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0000054.md b/md/UBERON/54/UBERON_0000054.md index e7a6dd4ba0..94be078915 100644 --- a/md/UBERON/54/UBERON_0000054.md +++ b/md/UBERON/54/UBERON_0000054.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000054 * *Label* = macula - * *Definition* = Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.909.625.125] + * *Definition* = Thickened areas of the saccule or utricle where the termination of the vestibular nerve occurs[MESH,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.909.625.125 ] * *Comment* = Usage notes: this refers to the inner ear structure, not the macula of the retina. We follow ZFA in including a grouping class for the macula of utricle and sacule ## Synonyms * macula - * maculae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sensory macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000386] - * sensory patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000386] - * acoustic macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.909.625.125] - * acoustic maculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.909.625.125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * maculae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sensory macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000386 ] + * sensory patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000386 ] + * acoustic macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.909.625.125 ] + * acoustic maculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.909.625.125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = macular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0000154.md b/md/UBERON/54/UBERON_0000154.md index 678c65cb24..0a27504b4d 100644 --- a/md/UBERON/54/UBERON_0000154.md +++ b/md/UBERON/54/UBERON_0000154.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0000454.md b/md/UBERON/54/UBERON_0000454.md index 1a27a7e67a..2bdd6763ae 100644 --- a/md/UBERON/54/UBERON_0000454.md +++ b/md/UBERON/54/UBERON_0000454.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000454 * *Label* = cerebral subcortex - * *Definition* = The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Cerebral_Subcortex] + * *Definition* = The layer located below the cerebral cortex that includes the forebrain, midbrain and hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Cerebral_Subcortex ] ## Synonyms - * Cerebral medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242188] - * subcortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002858] + * Cerebral medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242188 ] + * subcortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002858 ] ## Cross-references * BTO:0002858 * FMA:242188 - * UMLS:C0815008 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Subcortex] + * UMLS:C0815008 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Subcortex ] * ncithesaurus:Cerebral_Subcortex ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0000954.md b/md/UBERON/54/UBERON_0000954.md index 248d290e38..86d1e7f7d2 100644 --- a/md/UBERON/54/UBERON_0000954.md +++ b/md/UBERON/54/UBERON_0000954.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000954 * *Label* = obsolete intestine muscle - * *Definition* = intestinal muscle cell, attach to intestine and body wall anterior to anus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WB:Paper00000653] + * *Definition* = intestinal muscle cell, attach to intestine and body wall anterior to anus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WB:Paper00000653 ] ## Synonyms @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00003537 * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005796 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000954 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_0001054.md b/md/UBERON/54/UBERON_0001054.md index 5fefc62d4e..83b5c84d17 100644 --- a/md/UBERON/54/UBERON_0001054.md +++ b/md/UBERON/54/UBERON_0001054.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001054 * *Label* = Malpighian tubule - * *Definition* = The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Malpighian_tubule] + * *Definition* = The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Malpighian_tubule ] * *Comment* = Editor note: this will be ceded to the Arthropod Anatomy Ontology ## Synonyms - * Malphigian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000810] - * tuba Malpighii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000810] + * Malphigian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000810 ] + * tuba Malpighii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000810 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001154.md b/md/UBERON/54/UBERON_0001154.md index 2f38d0e14c..2e5a51adf0 100644 --- a/md/UBERON/54/UBERON_0001154.md +++ b/md/UBERON/54/UBERON_0001154.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001154 * *Label* = vermiform appendix - * *Definition* = a blind-ended tube connected to the cecum, from which it develops embryologically[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vermiform_appendix] + * *Definition* = a blind-ended tube connected to the cecum, from which it develops embryologically[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vermiform_appendix ] ## Synonyms * appendix - * appendix vermiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14542[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * appendix vermiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14542, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * caecal appendix * cecal appendix * vermix - * apex of cecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001306] - * appendix vermiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vermiform_appendix[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * apex of cecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001306 ] + * appendix vermiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vermiform_appendix, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,7 +31,7 @@ * MIAA:0000287 * OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA * SCTID:181255000 - * UMLS:C0003617 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vermiform_Appendix] + * UMLS:C0003617 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vermiform_Appendix ] * VHOG:0001306 * Wikipedia:Vermiform_appendix * galen:AppendixVermiformis @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A comparative anatomical approach reveals three apparent morphotypes of the cecal appendix, as well as appendix-like structures in some species that lack a true cecal appendix. Cladistic analyses indicate that the appendix has evolved independently at least twice (at least once in diprotodont marsupials and at least once in Euarchontoglires), shows a highly significant (P < 0.0001) phylogenetic signal in its distribution, and has been maintained in mammalian evolution for 80 million years or longer.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = appendiceal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001254.md b/md/UBERON/54/UBERON_0001254.md index 58c42b3c1d..59a0c0302c 100644 --- a/md/UBERON/54/UBERON_0001254.md +++ b/md/UBERON/54/UBERON_0001254.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001254 * *Label* = urothelium of ureter - * *Definition* = the luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder[MP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000535] + * *Definition* = the luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder[MP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000535 ] * *Comment* = AO notes: MP treats ureter urothelium and ureter luminal urothelium as exact synonyms, yes MA treats these as distinct; see also: transitional epithelium vs urothelium ## Synonyms @@ -11,7 +11,7 @@ * transitional epithelium of ureter * ureter transitional epithelium * ureter urothelium - * ureter luminal urothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000535[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * ureter luminal urothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000535, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) and [urothelium](../../UBERON/65/UBERON_0000365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001354.md b/md/UBERON/54/UBERON_0001354.md index f7ee15f2ea..6268721b63 100644 --- a/md/UBERON/54/UBERON_0001354.md +++ b/md/UBERON/54/UBERON_0001354.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001354 * *Label* = inferior epigastric artery - * *Definition* = In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_epigastric_artery] + * *Definition* = In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_epigastric_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria epigastrica inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_epigastric_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria epigastrica inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_epigastric_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0001978 * OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw * SCTID:244288009 - * UMLS:C0226401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Epigastric_Artery] + * UMLS:C0226401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Epigastric_Artery ] * Wikipedia:Inferior_epigastric_artery * http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png * ncithesaurus:Inferior_Epigastric_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001454.md b/md/UBERON/54/UBERON_0001454.md index 4721f59716..b6181fd8dd 100644 --- a/md/UBERON/54/UBERON_0001454.md +++ b/md/UBERON/54/UBERON_0001454.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001454 * *Label* = distal tarsal bone 3 - * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005054[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cuneiform_bone] + * *Definition* = Endochondral tarsal bone articulating with centralia and metatarsal 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005054, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cuneiform_bone ] * *Comment* = The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted] ## Synonyms - * cuneiforme 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005054] - * distal tarsal 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005054] - * ectocuneiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005054] - * external cuneiform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cuneiform_bone] + * cuneiforme 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005054 ] + * distal tarsal 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005054 ] + * ectocuneiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005054 ] + * external cuneiform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cuneiform_bone ] * external cuneiform bone of foot * lateral cuneiform - * lateral cuneiform bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24520] - * tarsal 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000920] + * lateral cuneiform bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24520 ] + * tarsal 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000920 ] * third cuneiform bone * foor distal carpal bone 3 - * os cuneiforme laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os cuneiforme tertium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cuneiform_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ossa cuneiforme laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002358] + * os cuneiforme laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os cuneiforme tertium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cuneiform_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ossa cuneiforme laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002358 ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0001354 * OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA * SCTID:182117003 - * UMLS:C1517036 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Cuneiform_Bone_of_the_Foot] + * UMLS:C1517036 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Cuneiform_Bone_of_the_Foot ] * VSAO:0005054 * Wikipedia:Lateral_cuneiform_bone * galen:LateralCuneiform @@ -54,7 +54,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal tarsal bone 3 endochondral element](../../UBERON/08/UBERON_0015108.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001554.md b/md/UBERON/54/UBERON_0001554.md index a92b503d2c..53a313a9cb 100644 --- a/md/UBERON/54/UBERON_0001554.md +++ b/md/UBERON/54/UBERON_0001554.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001554 * *Label* = skin of hip - * *Definition* = A zone of skin that is part of a hip region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A zone of skin that is part of a hip region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: in MA this isa hindlimb skin ## Synonyms - * hip region zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hip region zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * hip skin - * hip zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hip zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001654.md b/md/UBERON/54/UBERON_0001654.md index a6d1a45909..26a52e92ed 100644 --- a/md/UBERON/54/UBERON_0001654.md +++ b/md/UBERON/54/UBERON_0001654.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001654 * *Label* = supra-orbital vein - * *Definition* = The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supra-orbital_vein] + * *Definition* = The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supra-orbital_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:50904 * MA:0002228 * SCTID:152006005 - * UMLS:C0226535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Supra-orbital_Vein] + * UMLS:C0226535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Supra-orbital_Vein ] * Wikipedia:Supra-orbital_vein * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png * ncithesaurus:Supra-orbital_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001754.md b/md/UBERON/54/UBERON_0001754.md index 36ee0da003..ef770cf92e 100644 --- a/md/UBERON/54/UBERON_0001754.md +++ b/md/UBERON/54/UBERON_0001754.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001754 * *Label* = dental pulp - * *Definition* = the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_pulp] + * *Definition* = the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_pulp ] ## Synonyms * pulp of tooth - * tooth pulp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005141] - * dental pulp cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000339] + * tooth pulp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005141 ] + * dental pulp cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000339 ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A14.254.900.260 * SCTID:362110007 * TAO:0005141 - * UMLS:C0011399 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dental_Pulp] + * UMLS:C0011399 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dental_Pulp ] * VHOG:0001469 * Wikipedia:Dental_pulp * ZFA:0005141 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The oral cavity of vertebrates is generally thought to arise as an ectodermal invagination. Consistent with this, oral teeth are proposed to arise exclusively from ectoderm, contributing to tooth enamel epithelium, and from neural crest derived mesenchyme, contributing to dentin and pulp (reference 1); Teeth and tooth-like structures, together named odontodes, are repeated organs thought to share a common evolutionary origin. These structures can be found in gnathostomes at different locations along the body: oral teeth in the jaws, teeth and denticles in the oral-pharyngeal cavity, and dermal denticles on elasmobranch skin (reference 2).[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001854.md b/md/UBERON/54/UBERON_0001854.md index c096d6bfb5..f85c5484c9 100644 --- a/md/UBERON/54/UBERON_0001854.md +++ b/md/UBERON/54/UBERON_0001854.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001854 * *Label* = saccule of membranous labyrinth - * *Definition* = A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saccule] + * *Definition* = A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saccule ] * *Comment* = XAO/AAO to be checked - see https://github.com/seger/aao/issues/5 ## Synonyms @@ -11,8 +11,8 @@ * membranous labyrinth saccule * saccule * sacculus (labyrinthus vestibularis) - * sacculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000428] - * sacculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saccule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sacculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000428 ] + * sacculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saccule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0000246 * SCTID:279827000 * TAO:0000428 - * UMLS:C0036029 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Saccule] + * UMLS:C0036029 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Saccule ] * VHOG:0000374 * Wikipedia:Saccule * XAO:0000196 @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The most ventral chamber of the membranous labyrinth. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-25, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) .[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0001954.md b/md/UBERON/54/UBERON_0001954.md index 60a87aca61..855a4fb612 100644 --- a/md/UBERON/54/UBERON_0001954.md +++ b/md/UBERON/54/UBERON_0001954.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001954 * *Label* = Ammon's horn - * *Definition* = A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_721] + * *Definition* = A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_721 ] * *Comment* = WP: Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish.[82] The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the "avian hippocampus". The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa.[86] One of the consequences of this is that the medial pallium ("hippocampal" zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming "cognitive maps" of the areas they inhabit.[80] There is evidence that damage to the lateral pallium impairs spatial memory. ## Synonyms - * Ammon's horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021541] - * ammon gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021541] - * ammon horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_721] + * Ammon's horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021541 ] + * ammon gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021541 ] + * ammon horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_721 ] * hippocampus major * hippocampus proper - * hippocampus proprius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62493[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Ammon horn fields [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CA] - * Ammons horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003705] - * cornu ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021541] - * hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000191] + * hippocampus proprius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62493, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Ammon horn fields [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CA ] + * Ammons horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003705 ] + * cornu ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021541 ] + * hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000191 ] ## Cross-references @@ -41,8 +41,8 @@ * NeuroNames:3157 * OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA * SCTID:361561007 - * UMLS:C0019564 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_721] - * UMLS:C0019564 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hippocampus] + * UMLS:C0019564 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_721 ] + * UMLS:C0019564 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hippocampus ] * VHOG:0001177 * Wikipedia:Hippocampus * http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA @@ -75,8 +75,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003940 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004165 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002054.md b/md/UBERON/54/UBERON_0002054.md index 38d320d3b8..456f166122 100644 --- a/md/UBERON/54/UBERON_0002054.md +++ b/md/UBERON/54/UBERON_0002054.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002054 * *Label* = zona fasciculata of adrenal gland - * *Definition* = The zona fasciculata constitutes the middle zone of the adrenal cortex, sitting directly beneath the zona glomerulosa. Constituent cells are organized into bundles or 'fascicles'. The zona fasciculata chiefly produces glucocorticoids (mainly cortisol in the human), which regulates the metabolism of glucose, especially in times of stress (e.g. , part of the fight-or-flight response). This tissue also generates a small amount of weak androgens. In certain animals such as rodents, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol. Steroid-producing adrenal tumours and hyperplasias of the zona fasciculata result in excess cortisol production and are the cause for adrenal Cushing's syndrome. The genetic disorder McCune-Albright syndrome can also present Cushing's syndrome in affected patients. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_fasciculata] + * *Definition* = The zona fasciculata constitutes the middle zone of the adrenal cortex, sitting directly beneath the zona glomerulosa. Constituent cells are organized into bundles or 'fascicles'. The zona fasciculata chiefly produces glucocorticoids (mainly cortisol in the human), which regulates the metabolism of glucose, especially in times of stress (e.g. , part of the fight-or-flight response). This tissue also generates a small amount of weak androgens. In certain animals such as rodents, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol. Steroid-producing adrenal tumours and hyperplasias of the zona fasciculata result in excess cortisol production and are the cause for adrenal Cushing's syndrome. The genetic disorder McCune-Albright syndrome can also present Cushing's syndrome in affected patients. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_fasciculata ] ## Synonyms - * adrenal gland zona fasciculata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001890] - * zona fasciculata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000050] + * adrenal gland zona fasciculata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001890 ] + * zona fasciculata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000050 ] * zona fasciculata of suprarenal gland ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002154.md b/md/UBERON/54/UBERON_0002154.md index f7dec3d6bb..07279e46d4 100644 --- a/md/UBERON/54/UBERON_0002154.md +++ b/md/UBERON/54/UBERON_0002154.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002154 * *Label* = lateral reticular nucleus - * *Definition* = The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_reticular_nucleus] + * *Definition* = The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_reticular_nucleus ] * *Comment* = Comment: note in ABA this is disjoint from MDR, but we relax this here to accomodate FMA ## Synonyms * lateral reticular nucleus (medulla) - * nucleus reticularis lateralis medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_reticular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus reticularis lateralis medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_reticular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral medullary reticular complex](../../UBERON/75/UBERON_0009775.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002254.md b/md/UBERON/54/UBERON_0002254.md index 980dd69422..0399216811 100644 --- a/md/UBERON/54/UBERON_0002254.md +++ b/md/UBERON/54/UBERON_0002254.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002254 * *Label* = thyroglossal duct - * *Definition* = The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroglossal_duct] + * *Definition* = The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroglossal_duct ] * *Comment* = FMA treats this as vestigial ## Synonyms - * ductus thyreoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroglossal_duct] - * ductus thyroglossalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroglossal_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus thyreoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroglossal_duct ] + * ductus thyroglossalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroglossal_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:77274 * MA:0000130 * SCTID:308822005 - * UMLS:C0231104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroglossal_Duct] + * UMLS:C0231104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroglossal_Duct ] * VHOG:0000746 * Wikipedia:Thyroglossal_duct * http://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An embryonic duct extending between the thyroid primordium and the posterior tongue. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A duct, called the thyroglossal duct in mammals, is considered to be characteristic of thyroid development. The thyroglossal duct, degenerating in many species during late development, marks the way the thyroid primordium relocates during embryonic development from the pharynx to its position deep in the cervical mesenchyme. We cannot exclude that the duct of the endostyle and the thyroglossal duct may have evolved independently, but as they both represent a more or less persistent connection of the organ to the pharynx, it is likely that they are homologous structures.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002354.md b/md/UBERON/54/UBERON_0002354.md index 30832ebc5c..8a5396d963 100644 --- a/md/UBERON/54/UBERON_0002354.md +++ b/md/UBERON/54/UBERON_0002354.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002354 * *Label* = purkinje fiber - * *Definition* = Conducting tissue of heart which consists of Purkinje myocytes.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Purkinje_fiber] + * *Definition* = Conducting tissue of heart which consists of Purkinje myocytes.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Purkinje_fiber ] ## Synonyms @@ -15,7 +15,7 @@ * GAID:560 * MA:0000096 * MESH:A07.541.409.683 - * UMLS:C0034144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Purkinje_Fiber] + * UMLS:C0034144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Purkinje_Fiber ] * Wikipedia:Purkinje_fiber * http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png * ncithesaurus:Purkinje_Fiber @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002454.md b/md/UBERON/54/UBERON_0002454.md index 4fd02cd68c..bf6285590d 100644 --- a/md/UBERON/54/UBERON_0002454.md +++ b/md/UBERON/54/UBERON_0002454.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002454 * *Label* = dorsal metacarpal artery - * *Definition* = Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_metacarpal_artery] + * *Definition* = Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_metacarpal_artery ] * *Comment* = check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery ## Synonyms - * arteriae metacarpales dorsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70800[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae metacarpales dorsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70800, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * dorsal metacarpal arteries * dorsal metacarpal arteries set - * set of dorsal metacarpal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70800] + * set of dorsal metacarpal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70800 ] ## Cross-references * FMA:70800 * MA:0001944 * SCTID:244320002 - * UMLS:C0447094 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Metacarpal_Artery] + * UMLS:C0447094 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Metacarpal_Artery ] * Wikipedia:Dorsal_metacarpal_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray529.png/200px-Gray529.png * ncithesaurus:Dorsal_Metacarpal_Artery @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002554.md b/md/UBERON/54/UBERON_0002554.md index 77400a5a22..f8dd09850c 100644 --- a/md/UBERON/54/UBERON_0002554.md +++ b/md/UBERON/54/UBERON_0002554.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002554 * *Label* = regional part of superior colliculus - * *Definition* = A multi-tissue structure that is part of a superior colliculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a superior colliculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85592] - * superior colliculus segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85592] + * segment of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85592 ] + * superior colliculus segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85592 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus](../../UBERON/45/UBERON_0001945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002654.md b/md/UBERON/54/UBERON_0002654.md index 8b3cd2cff6..3433537453 100644 --- a/md/UBERON/54/UBERON_0002654.md +++ b/md/UBERON/54/UBERON_0002654.md @@ -6,30 +6,30 @@ ## Synonyms - * dorsomedial thalamic nucleus, parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * lateral mediodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * lateral nucleus of medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * mediodorsal thalamic nucleus, pars fasciculosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1283] - * nucleus medialis dorsalis fasciculosis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1283] - * nucleus medialis dorsalis nucleus fasciculosis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1283] - * nucleus medialis dorsalis, pars parvicellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1283] - * pars parvocellularis lateralis nuclei mediodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars principalis nuclei ventralis anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvicellular part of dorsomedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * parvocellular nucleus of medial dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * principal division of ventral anterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62162] - * MDPC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1283[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus medialis dorsalis nucleus fasciculosus (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:315[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis dorsalis, pars parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:315[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parvicellular part of the medial dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:315] + * dorsomedial thalamic nucleus, parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * lateral mediodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * lateral nucleus of medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * mediodorsal thalamic nucleus, pars fasciculosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1283 ] + * nucleus medialis dorsalis fasciculosis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1283 ] + * nucleus medialis dorsalis nucleus fasciculosis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1283 ] + * nucleus medialis dorsalis, pars parvicellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1283 ] + * pars parvocellularis lateralis nuclei mediodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars principalis nuclei ventralis anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvicellular part of dorsomedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * parvocellular nucleus of medial dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * principal division of ventral anterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62162 ] + * MDPC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1283, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus medialis dorsalis nucleus fasciculosus (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:315, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis dorsalis, pars parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:315, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parvicellular part of the medial dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:315 ] ## Cross-references * BAMS:MDPC * FMA:62162 * NIF_GrossAnatomy:birnlex_1283 - * NeuroNames:315 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1283] - * UMLS:C0228330 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1283] + * NeuroNames:315 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1283 ] + * UMLS:C0228330 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1283 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002754.md b/md/UBERON/54/UBERON_0002754.md index 1110643e0e..15f726f605 100644 --- a/md/UBERON/54/UBERON_0002754.md +++ b/md/UBERON/54/UBERON_0002754.md @@ -7,18 +7,18 @@ ## Synonyms * predorsal bundle of edinger - * predorsal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72614] - * tectospinal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72614] - * fasciculus praedorsalis (Tschermak) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:780[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fasciculus predorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:780[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * predorsal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72614 ] + * tectospinal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72614 ] + * fasciculus praedorsalis (Tschermak) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:780, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fasciculus predorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:780, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:pd * FMA:72614 * NIF_GrossAnatomy:birnlex_1590 - * NeuroNames:780 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1590] - * UMLS:C0175542 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1590] + * NeuroNames:780 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1590 ] + * UMLS:C0175542 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1590 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002854.md b/md/UBERON/54/UBERON_0002854.md index 2f94026797..984f9c4212 100644 --- a/md/UBERON/54/UBERON_0002854.md +++ b/md/UBERON/54/UBERON_0002854.md @@ -6,15 +6,15 @@ ## Synonyms - * eleventh thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6331] - * eleventh thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6331] + * eleventh thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6331 ] + * eleventh thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6331 ] ## Cross-references * EMAPA:25184 * FMA:6331 * NIF_GrossAnatomy:birnlex_2621 - * UMLS:C0501709 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2621] + * UMLS:C0501709 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2621 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0002954.md b/md/UBERON/54/UBERON_0002954.md index 718962623e..586e024396 100644 --- a/md/UBERON/54/UBERON_0002954.md +++ b/md/UBERON/54/UBERON_0002954.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002954 * *Label* = dorsal hypothalamic area - * *Definition* = a relatively small region of the hypothalamus located inferior to the hypothalamic sulcus; In humans it contains the following nuclei: portions of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), endopeduncular nucleus [TA]) (nucleus endopeduncularis [TA]), and portions of the nucleus of the ansa lenticularis (nucleus ansae lenticularis [TA]). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/dorsal+hypothalamic+area] + * *Definition* = a relatively small region of the hypothalamus located inferior to the hypothalamic sulcus; In humans it contains the following nuclei: portions of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), endopeduncular nucleus [TA]) (nucleus endopeduncularis [TA]), and portions of the nucleus of the ansa lenticularis (nucleus ansae lenticularis [TA]). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/dorsal+hypothalamic+area ] ## Synonyms - * DH [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_777[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area dorsalis hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:430[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area hypothalamica dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:430[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal horn of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DH] - * nucleus hypothalamicus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:430[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * DH [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_777, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area dorsalis hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:430, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area hypothalamica dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:430, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal horn of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DH ] + * nucleus hypothalamicus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:430, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * BM:Die-Hy-HDA * FMA:62339 * NIF_GrossAnatomy:birnlex_777 - * NeuroNames:430 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_777] - * UMLS:C0175318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_777] + * NeuroNames:430 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_777 ] + * UMLS:C0175318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_777 ] * ZFA:0000347 ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Brain structure which is the dorsal most region of the hypothalamus and expands laterally and emerges caudal to the ventral zone and is separated from the median tuberal portion by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain[ZFA:0000347, ISBN:3764351209, ZFA:curator]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003054.md b/md/UBERON/54/UBERON_0003054.md index 038a3477a0..ff727cce0a 100644 --- a/md/UBERON/54/UBERON_0003054.md +++ b/md/UBERON/54/UBERON_0003054.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003054 * *Label* = roof plate - * *Definition* = a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021509[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15378040] + * *Definition* = a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021509, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15378040 ] * *Comment* = TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate ## Synonyms * roofplate - * alar plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Roof_plate] + * alar plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Roof_plate ] ## Cross-references @@ -25,9 +25,12 @@ ## Superclasses - * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) + * [cell layer](../../UBERON/19/UBERON_0000119.md) + * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) + * [embryonic tissue](../../UBERON/91/UBERON_0005291.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [glial cell](../../CL/25/CL_0000125.md) + * [in_dorsal_side_of](../../core#in/of/core#in_dorsal_side_of.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Equivalencies @@ -38,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003154.md b/md/UBERON/54/UBERON_0003154.md index b2b694df02..09be369151 100644 --- a/md/UBERON/54/UBERON_0003154.md +++ b/md/UBERON/54/UBERON_0003154.md @@ -7,7 +7,7 @@ ## Synonyms - * cheek [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004491] + * cheek [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004491 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004491 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000371 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003154 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_0003254.md b/md/UBERON/54/UBERON_0003254.md index 300cedf715..39e5a3a469 100644 --- a/md/UBERON/54/UBERON_0003254.md +++ b/md/UBERON/54/UBERON_0003254.md @@ -7,10 +7,10 @@ ## Synonyms - * amnion ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000117] - * amnion ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * amnionic ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * amnion epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000897] + * amnion ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000117 ] + * amnion ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * amnionic ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * amnion epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000897 ] ## Cross-references @@ -42,8 +42,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008359 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003354.md b/md/UBERON/54/UBERON_0003354.md index 44ffdc4b91..8ece929e94 100644 --- a/md/UBERON/54/UBERON_0003354.md +++ b/md/UBERON/54/UBERON_0003354.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003354 * *Label* = epithelium of rectum - * *Definition* = An epithelium that is part of a rectum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a rectum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17510] - * rectum epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rectum epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17510 ] + * rectum epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rectum epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003454.md b/md/UBERON/54/UBERON_0003454.md index 8175513e5a..ac5a7e6237 100644 --- a/md/UBERON/54/UBERON_0003454.md +++ b/md/UBERON/54/UBERON_0003454.md @@ -8,12 +8,12 @@ ## Synonyms - * Peyer's patch of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Peyer's patch of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aggregated lymphoid follicle of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15054] - * small bowel Peyer's patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small intestine Peyer's patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Peyer's patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15054] + * Peyer's patch of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Peyer's patch of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aggregated lymphoid follicle of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15054 ] + * small bowel Peyer's patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small intestine Peyer's patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Peyer's patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15054 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [Peyer's patch](../../UBERON/11/UBERON_0001211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003554.md b/md/UBERON/54/UBERON_0003554.md index de5a5767c1..a8f7b821a3 100644 --- a/md/UBERON/54/UBERON_0003554.md +++ b/md/UBERON/54/UBERON_0003554.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003554 * *Label* = hindbrain pia mater - * *Definition* = A pia mater that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindbrain pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of neuraxis of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhombencephalon pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000466] + * hindbrain pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of neuraxis of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhombencephalon pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000466 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pia mater that is part of the hindbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003654.md b/md/UBERON/54/UBERON_0003654.md index 27bf29f33a..eaa2487df1 100644 --- a/md/UBERON/54/UBERON_0003654.md +++ b/md/UBERON/54/UBERON_0003654.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003654 * *Label* = metatarsal bone of digit 5 - * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metatarsal bone that distally_connected_to a proximal phalanx of pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fifth metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24506] - * foot digit 5 metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fifth metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24506 ] + * foot digit 5 metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * metatarsal 5 - * metatarsal V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000929] - * metatarsal bone digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001373] - * metatarsal bone of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * metatarsal V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000929 ] + * metatarsal bone digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001373 ] + * metatarsal bone of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * toe 5 metatarsal * toe 5 metatarsus @@ -23,7 +23,7 @@ * FMA:24506 * MA:0001373 * SCTID:182144008 - * UMLS:C1709003 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsal_Bone_Digit_5] + * UMLS:C1709003 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsal_Bone_Digit_5 ] * ncithesaurus:Metatarsal_Bone_Digit_5 ## Subsets @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distally connected to](../../core#distally/to/core#distally_connected_to.md) some [proximal phalanx of pedal digit 5](../../UBERON/36/UBERON_0004336.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fifth metatarsal bone is recognized by a rough eminence, the tuberosity, on the lateral side of its base. The base articulates behind, by a triangular surface cut obliquely in a transverse direction, with the cuboid; and medially, with the fourth metatarsal. On the medial part of its dorsal surface is inserted the tendon of the Peronus tertius and on the dorsal surface of the tuberosity that of the Peronus brevis. A strong band of the plantar aponeurosis connects the projecting part of the tuberosity with the lateral process of the tuberosity of the calcaneus. The plantar surface of the base is grooved for the tendon of the Abductor digiti quinti, and gives origin to the Flexor digiti quinti brevis. The base of the metatarsal is often injured and a particularly notorious fracture is the Jones fracture. When the tuberosity is broken, it is called a pseudo-Jones fracture or a dancer's fracture. This is a common fracture of the fifth metatarsal. Stress fractures are common in the fifth metatarsal among athletes[Wikipedia:Fifth_metatarsal_bone]. * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 5 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003854.md b/md/UBERON/54/UBERON_0003854.md index 8887ddd605..5cd2f7aed7 100644 --- a/md/UBERON/54/UBERON_0003854.md +++ b/md/UBERON/54/UBERON_0003854.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003854 * *Label* = spinal cord neural plate - * *Definition* = A neural plate that develops_from a future spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neural plate that develops_from a future spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neural plate of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neural plate of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [future spinal cord](../../UBERON/41/UBERON_0006241.md) and [neural plate](../../UBERON/75/UBERON_0003075.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Neural plate that is part of the spinal cord. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...)[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0003954.md b/md/UBERON/54/UBERON_0003954.md index 1143e27eef..8f3843e869 100644 --- a/md/UBERON/54/UBERON_0003954.md +++ b/md/UBERON/54/UBERON_0003954.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003954 * *Label* = squamoparietal suture - * *Definition* = the articulation of the squamous portion of the temporal bones with the parietal bones[MP]. The squamosal suture arches backward from the pterion and connects the temporal squama with the lower border of the parietal: this suture is continuous behind with the short, nearly horizontal parietomastoid suture, which unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003844[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamosal_suture] + * *Definition* = the articulation of the squamous portion of the temporal bones with the parietal bones[MP]. The squamosal suture arches backward from the pterion and connects the temporal squama with the lower border of the parietal: this suture is continuous behind with the short, nearly horizontal parietomastoid suture, which unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003844, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamosal_suture ] ## Synonyms - * squamo-parietal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003844] + * squamo-parietal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003844 ] * squamoparietal suture of skull - * sutura squamosa cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamosal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * squamosal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamosal_suture] - * squamous suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamosal_suture] - * squamous suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52946] + * sutura squamosa cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamosal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * squamosal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamosal_suture ] + * squamous suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamosal_suture ] + * squamous suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52946 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [squamous part of temporal bone](../../UBERON/95/UBERON_0001695.md) and [connects](../../ts/core#connects.md) some [tetrapod parietal bone](../../UBERON/10/UBERON_0000210.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004054.md b/md/UBERON/54/UBERON_0004054.md index 454f31ad11..57926ce888 100644 --- a/md/UBERON/54/UBERON_0004054.md +++ b/md/UBERON/54/UBERON_0004054.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004054 * *Label* = internal male genitalia - * *Definition* = the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009205] + * *Definition* = the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009205 ] * *Comment* = Editor note: consider splitting genitalia from genital organ ## Synonyms - * internal male genital organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003096] - * male internal genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45655] - * organa genitalia masculina interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003096] + * internal male genital organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003096 ] + * male internal genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45655 ] + * organa genitalia masculina interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003096 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [internal genitalia](../../UBERON/75/UBERON_0004175.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004154.md b/md/UBERON/54/UBERON_0004154.md index 1c07f21c17..7ba5175050 100644 --- a/md/UBERON/54/UBERON_0004154.md +++ b/md/UBERON/54/UBERON_0004154.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004154 * *Label* = septum primum - * *Definition* = In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003284[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_primum] + * *Definition* = In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003284, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_primum ] * *Comment* = AO notes: part_of IAS in EHDAA2 ## Synonyms - * interatrial septum primum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001825] + * interatrial septum primum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001825 ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:17013 * FMA:63909 * SCTID:362017007 - * UMLS:C0225837 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Septum_Primum] + * UMLS:C0225837 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Septum_Primum ] * VHOG:0000020 * Wikipedia:Septum_primum * http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first of the two membranous sheets which partially separate the two atria during embryonic development. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004254.md b/md/UBERON/54/UBERON_0004254.md index 45aacf22fa..7f05cbed4d 100644 --- a/md/UBERON/54/UBERON_0004254.md +++ b/md/UBERON/54/UBERON_0004254.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004254 * *Label* = forelimb zeugopod muscle - * *Definition* = A muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a forelimb zeugopod (lower arm)[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forearm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37371] - * lower arm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000600] - * muscle of forearm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37371] - * wing zeugopod muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * forearm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37371 ] + * lower arm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000600 ] + * muscle of forearm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37371 ] + * wing zeugopod muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004354.md b/md/UBERON/54/UBERON_0004354.md index 3c04d0af17..b4b47c3e13 100644 --- a/md/UBERON/54/UBERON_0004354.md +++ b/md/UBERON/54/UBERON_0004354.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004354 * *Label* = male inguinal canal - * *Definition* = An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_canal#Contents] + * *Definition* = An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_canal#Contents ] * *Comment* = AO notes: in MP, this is implicitly part of male reproductive system, but not male genitalia ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inguinal canal](../../UBERON/02/UBERON_0003702.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004454.md b/md/UBERON/54/UBERON_0004454.md index dd0b67b7a7..3fbb572ea9 100644 --- a/md/UBERON/54/UBERON_0004454.md +++ b/md/UBERON/54/UBERON_0004454.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004454 * *Label* = tarsal region - * *Definition* = mesopodial segment of the pes, including the tarsal skeleton and associated tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = mesopodial segment of the pes, including the tarsal skeleton and associated tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = note that this term refers to the limb segment. See also: tarsal bones and tarsal skeleton. AO notes: MA has both tarsus (part of foot, has tarsal bone) and ankle (part of hindlimb, has joint, nerve, skin). ## Synonyms - * ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000043] + * ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000043 ] * ankle region * tarsal limb segment - * articulatio talocruralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hind basipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * hind mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * hock [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hock_(anatomy)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * articulatio talocruralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hind basipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * hind mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * hock [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hock_(anatomy), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -49,7 +49,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesopodium region](../../UBERON/16/UBERON_0006716.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002388 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004554.md b/md/UBERON/54/UBERON_0004554.md index 0e85389601..6da16796ae 100644 --- a/md/UBERON/54/UBERON_0004554.md +++ b/md/UBERON/54/UBERON_0004554.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004554 * *Label* = hindlimb digital artery - * *Definition* = A digital artery that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digital artery that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digital artery of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69713] - * hindlimb digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001964] + * digital artery of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69713 ] + * hindlimb digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001964 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digital artery](../../UBERON/52/UBERON_0004552.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004654.md b/md/UBERON/54/UBERON_0004654.md index b162d4fcf8..658a2c22a2 100644 --- a/md/UBERON/54/UBERON_0004654.md +++ b/md/UBERON/54/UBERON_0004654.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004654 * *Label* = temporal process of zygomatic bone - * *Definition* = The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_process_of_the_zygomatic_bone] + * *Definition* = The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_process_of_the_zygomatic_bone ] ## Synonyms - * facies temporalis ossis zygomatici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_process_of_the_zygomatic_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus temporalis (os zygomaticum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52904] - * zygomatic bone temporal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002812] + * facies temporalis ossis zygomatici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_process_of_the_zygomatic_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus temporalis (os zygomaticum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52904 ] + * zygomatic bone temporal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002812 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004754.md b/md/UBERON/54/UBERON_0004754.md index 88bd06c985..c7cda3c844 100644 --- a/md/UBERON/54/UBERON_0004754.md +++ b/md/UBERON/54/UBERON_0004754.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004754 * *Label* = foramen ovale of heart - * *Definition* = In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /f??re?m?n o??v??li/) closes at birth. It later forms the fossa ovalis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_ovale_(heart)] + * *Definition* = In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /f??re?m?n o??v??li/) closes at birth. It later forms the fossa ovalis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_ovale_(heart) ] ## Synonyms - * Bottalo's foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86043] - * falx septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_ovale_(heart)] - * foramen ovale cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:ForamenOvaleCordis] - * ostium secundum of Born [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_ovale_(heart)] - * foramen ovale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001873[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:ForamenOvale] + * Bottalo's foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86043 ] + * falx septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_ovale_(heart) ] + * foramen ovale cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:ForamenOvaleCordis ] + * ostium secundum of Born [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_ovale_(heart) ] + * foramen ovale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001873, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:ForamenOvale ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:86043 * MA:0001873 * SCTID:362015004 - * UMLS:C0016521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oval_Foramen] + * UMLS:C0016521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oval_Foramen ] * Wikipedia:Foramen_ovale_(heart) * galen:ForamenOvaleCordis * ncithesaurus:Oval_Foramen @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0004854.md b/md/UBERON/54/UBERON_0004854.md index 4f6c45ef4e..5588cd7550 100644 --- a/md/UBERON/54/UBERON_0004854.md +++ b/md/UBERON/54/UBERON_0004854.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004854 * *Label* = gastrointestinal system mesentery - * *Definition* = A mesentery that is part of a digestive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a digestive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive system mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive system mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005054.md b/md/UBERON/54/UBERON_0005054.md index 32c0864d7f..235f04c036 100644 --- a/md/UBERON/54/UBERON_0005054.md +++ b/md/UBERON/54/UBERON_0005054.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005054 * *Label* = dorsal nerve cord - * *Definition* = The dorsal tubular cord of nervous tissue above the notochord of a chordate that comprises or develops into the central nervous system[BTO]. The nerve cord of chordates develops dorsally in the body as a hollow tube above the notochord. In most species it differentiates in embryogeny into the brain anteriorly and spinal cord that runs through the trunk and tail. Together the brain and spinal cord are the central nervous system to which peripheral sensory and motor nerves connect[TOL]. The dorsal nerve cord is one of the embryonic features unique to chordates, along with a notochord, a post-anal tail and pharyngeal slits. The dorsal nerve cord is a hollow cord dorsal to the notochord. It is formed from a part of the ectoderm that rolls, forming the hollow tube, compared to other animal phyla, which have solid, ventral tubes. The dorsal nerve cord is later modified into the brain and spinal cord. Dorsal nerve cord is mainly found in phylum Vertebrata[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002329[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nerve_cord[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/Chordata/2499] + * *Definition* = The dorsal tubular cord of nervous tissue above the notochord of a chordate that comprises or develops into the central nervous system[BTO]. The nerve cord of chordates develops dorsally in the body as a hollow tube above the notochord. In most species it differentiates in embryogeny into the brain anteriorly and spinal cord that runs through the trunk and tail. Together the brain and spinal cord are the central nervous system to which peripheral sensory and motor nerves connect[TOL]. The dorsal nerve cord is one of the embryonic features unique to chordates, along with a notochord, a post-anal tail and pharyngeal slits. The dorsal nerve cord is a hollow cord dorsal to the notochord. It is formed from a part of the ectoderm that rolls, forming the hollow tube, compared to other animal phyla, which have solid, ventral tubes. The dorsal nerve cord is later modified into the brain and spinal cord. Dorsal nerve cord is mainly found in phylum Vertebrata[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002329, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nerve_cord, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/Chordata/2499 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005154.md b/md/UBERON/54/UBERON_0005154.md index c3f4c60aa1..f534d022bd 100644 --- a/md/UBERON/54/UBERON_0005154.md +++ b/md/UBERON/54/UBERON_0005154.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005154 * *Label* = epithelial cord - * *Definition* = A cord of epithelial cells without a lumen and usually several cells thick. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000216] + * *Definition* = A cord of epithelial cells without a lumen and usually several cells thick. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000216 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005254.md b/md/UBERON/54/UBERON_0005254.md index 2eefc7a074..e85d085356 100644 --- a/md/UBERON/54/UBERON_0005254.md +++ b/md/UBERON/54/UBERON_0005254.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005254 * *Label* = upper leg mesenchyme - * *Definition* = Mesenchyme that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005354.md b/md/UBERON/54/UBERON_0005354.md index da014da328..9830689ad3 100644 --- a/md/UBERON/54/UBERON_0005354.md +++ b/md/UBERON/54/UBERON_0005354.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005354 * *Label* = malleus processus brevis - * *Definition* = the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010324] + * *Definition* = the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010324 ] ## Synonyms @@ -18,7 +18,7 @@ * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) * [skeletal element projection](../../UBERON/00/UBERON_4100000.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) ## Equivalencies @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005454.md b/md/UBERON/54/UBERON_0005454.md index 00508756bd..7e2fd87e6d 100644 --- a/md/UBERON/54/UBERON_0005454.md +++ b/md/UBERON/54/UBERON_0005454.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005454 * *Label* = internal oblique - * *Definition* = The internal oblique muscle (of the abdomen) is the intermediate muscle of the abdomen, lying just underneath the external oblique and just above (superficial to) the transverse abdominal muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] + * *Definition* = The internal oblique muscle (of the abdomen) is the intermediate muscle of the abdomen, lying just underneath the external oblique and just above (superficial to) the transverse abdominal muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] ## Synonyms - * abdominal internal oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000789] - * obliquus internus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002346] - * obliquus internus abdominis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13891] - * Obliquus internus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * abdominal internal oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal abdominal oblique [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal abdominal oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal oblique abdominal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal oblique abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal oblique abdominis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * internal oblique muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * musculus obliquus internus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * obliqui internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * obliquus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * obliquus internus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] - * obliquus internus abdominis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_internal_oblique_muscle] + * abdominal internal oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000789 ] + * obliquus internus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002346 ] + * obliquus internus abdominis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13891 ] + * Obliquus internus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * abdominal internal oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal abdominal oblique [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal abdominal oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal oblique abdominal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal oblique abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal oblique abdominis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * internal oblique muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * musculus obliquus internus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * obliqui internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * obliquus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * obliquus internus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] + * obliquus internus abdominis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_internal_oblique_muscle ] ## Cross-references @@ -32,7 +32,7 @@ * FMA:13891 * MA:0002346 * SCTID:244947001 - * UMLS:C1512878 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Oblique_Muscle] + * UMLS:C1512878 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Oblique_Muscle ] * VHOG:0000789 * Wikipedia:Abdominal_internal_oblique_muscle * http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Behind the thorax, the lateral group (of muscles in reptiles and mammals) remains essentially as for amphibians. (It breaks into three sheet-like layers: external oblique muscle, the internal oblique, and the transversus). More anteriorly, however, the ribs, now enlarged, penetrate and alter this group of muscles. The transversus is excluded from the thorax and the external and internal obliques become, respectively, the external and internal intercostal muscles, which contribute to the new function of ventilation of the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005654.md b/md/UBERON/54/UBERON_0005654.md index 4832cc4d44..e18ee29c44 100644 --- a/md/UBERON/54/UBERON_0005654.md +++ b/md/UBERON/54/UBERON_0005654.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005654 * *Label* = lower jaw molar epithelium - * *Definition* = A dental epithelium that is part of a lower jaw molar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dental epithelium that is part of a lower jaw molar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dental epithelium](../../UBERON/43/UBERON_0003843.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw molar](../../UBERON/67/UBERON_0003667.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005754.md b/md/UBERON/54/UBERON_0005754.md index a89b29c2d2..e1a7eec266 100644 --- a/md/UBERON/54/UBERON_0005754.md +++ b/md/UBERON/54/UBERON_0005754.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005754 * *Label* = rostral part of nephrogenic cord - * *Definition* = The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] + * *Definition* = The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0005854.md b/md/UBERON/54/UBERON_0005854.md index 55525a9bf0..93d0f6f980 100644 --- a/md/UBERON/54/UBERON_0005854.md +++ b/md/UBERON/54/UBERON_0005854.md @@ -6,13 +6,13 @@ ## Synonyms - * cervical spinal cord anterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1660] + * cervical spinal cord anterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1660 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1660 - * UMLS:C0228619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1660] - * UMLS:C1278746 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1660] + * UMLS:C0228619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1660 ] + * UMLS:C1278746 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1660 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006054.md b/md/UBERON/54/UBERON_0006054.md index d3fda11670..9f5419e22d 100644 --- a/md/UBERON/54/UBERON_0006054.md +++ b/md/UBERON/54/UBERON_0006054.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006054 * *Label* = surface of occiput - * *Definition* = The occiput is the anatomical term for the posterior (back) portion of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occiput] + * *Definition* = The occiput is the anatomical term for the posterior (back) portion of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occiput ] ## Synonyms - * occiput surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46479] - * regio occipitalis (capitis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46479] - * occiput [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46479] - * occiput cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occiput[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * occiput surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46479 ] + * regio occipitalis (capitis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46479 ] + * occiput [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46479 ] + * occiput cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occiput, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006254.md b/md/UBERON/54/UBERON_0006254.md index a8d03436b9..b73361b3e7 100644 --- a/md/UBERON/54/UBERON_0006254.md +++ b/md/UBERON/54/UBERON_0006254.md @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [ischial endochondral element](../../UBERON/56/UBERON_0015056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006454.md b/md/UBERON/54/UBERON_0006454.md index b6b869331f..9b6a43b6db 100644 --- a/md/UBERON/54/UBERON_0006454.md +++ b/md/UBERON/54/UBERON_0006454.md @@ -6,16 +6,16 @@ ## Synonyms - * T6 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1387] - * sixth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1387] - * t6 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71172] + * T6 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1387 ] + * sixth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1387 ] + * t6 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71172 ] ## Cross-references * FMA:71172 * NIF_GrossAnatomy:birnlex_1387 * SCTID:278768007 - * UMLS:C0457864 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1387] + * UMLS:C0457864 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1387 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006554.md b/md/UBERON/54/UBERON_0006554.md index 5121961872..b661e233dd 100644 --- a/md/UBERON/54/UBERON_0006554.md +++ b/md/UBERON/54/UBERON_0006554.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006554 * *Label* = urinary system structure - * *Definition* = An anatomical structure that is part of a excretory system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical structure that is part of a excretory system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal system](../../UBERON/08/UBERON_0001008.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006654.md b/md/UBERON/54/UBERON_0006654.md index e2deffedd0..d717986a1f 100644 --- a/md/UBERON/54/UBERON_0006654.md +++ b/md/UBERON/54/UBERON_0006654.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006654 * *Label* = perineal body - * *Definition* = The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body] + * *Definition* = The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body ] ## Synonyms - * central tendon of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20274] - * central tendinous point [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body] - * central tendinous point of the perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body] - * central tendon of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body] - * centrum tendineum perinei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus perineale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central tendon of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20274 ] + * central tendinous point [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body ] + * central tendinous point of the perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body ] + * central tendon of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body ] + * centrum tendineum perinei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus perineale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006854.md b/md/UBERON/54/UBERON_0006854.md index 9474107aa2..81c30a0f91 100644 --- a/md/UBERON/54/UBERON_0006854.md +++ b/md/UBERON/54/UBERON_0006854.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006854 * *Label* = distal straight tubule postmacula segment - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376 ] ## Synonyms - * cortical thick ascending limb of Henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * kidney cortex loop of Henle ascending limb thick segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * renal cortex loop of Henle ascending limb thick segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * renal cortex thick ascending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * cortical thick ascending limb of Henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * kidney cortex loop of Henle ascending limb thick segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * renal cortex loop of Henle ascending limb thick segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * renal cortex thick ascending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0006954.md b/md/UBERON/54/UBERON_0006954.md index 713c1ccbb9..292d8a1baa 100644 --- a/md/UBERON/54/UBERON_0006954.md +++ b/md/UBERON/54/UBERON_0006954.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006954 * *Label* = mammary myoepithelium - * *Definition* = A myoepithelium that is part of a mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A myoepithelium that is part of a mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lactiferous ductal myo-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67798] - * myo-epithelium of lactiferous duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67798] - * myoepithelium of lactiferous duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67798] + * lactiferous ductal myo-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67798 ] + * myo-epithelium of lactiferous duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67798 ] + * myoepithelium of lactiferous duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67798 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myoepithelium](../../UBERON/20/UBERON_0000420.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0007154.md b/md/UBERON/54/UBERON_0007154.md index fdcfac5d04..1f2f1fd43b 100644 --- a/md/UBERON/54/UBERON_0007154.md +++ b/md/UBERON/54/UBERON_0007154.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007154 * *Label* = inferior epigastric vein - * *Definition* = The blood vessel carrying deoxygenated blood that arises from the superior epigastric vein and empties into the external iliac vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Deep_Epigastric_Vein] + * *Definition* = The blood vessel carrying deoxygenated blood that arises from the superior epigastric vein and empties into the external iliac vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Deep_Epigastric_Vein ] ## Synonyms * deep epigastric vein - * venae epigastricae inferiores [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae epigastricae inferiores [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:18760 * FMA:21162 * SCTID:286872000 - * UMLS:C0226762 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Epigastric_Vein] + * UMLS:C0226762 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Epigastric_Vein ] * ncithesaurus:Deep_Epigastric_Vein ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0007254.md b/md/UBERON/54/UBERON_0007254.md index b2bab2625b..b518afa876 100644 --- a/md/UBERON/54/UBERON_0007254.md +++ b/md/UBERON/54/UBERON_0007254.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007254 * *Label* = intervertebral disk of thoracic vertebra - * *Definition* = An intervertebral disk that is part of a thoracic region of vertebral column. A thoracic intervertebral disk connects at least one thoracic vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intervertebral disk that is part of a thoracic region of vertebral column. A thoracic intervertebral disk connects at least one thoracic vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * intervertebral disc of thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19489] + * intervertebral disc of thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19489 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intervertebral disk](../../UBERON/66/UBERON_0001066.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic region of vertebral column](../../UBERON/73/UBERON_0006073.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0007354.md b/md/UBERON/54/UBERON_0007354.md index 5fd90039ca..4a659ece71 100644 --- a/md/UBERON/54/UBERON_0007354.md +++ b/md/UBERON/54/UBERON_0007354.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007354 * *Label* = cartilage of pharyngotympanic tube - * *Definition* = The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cartilage_of_pharyngotympanic_tube] + * *Definition* = The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cartilage_of_pharyngotympanic_tube ] ## Synonyms - * cartilage of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60096] - * cartilage of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60096] - * cartilago tubae auditivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60096[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilago tubae auditoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60096[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pharyngotympanic tube cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60096] - * cartilago tubae auditivae; cartilago tubae auditoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cartilage_of_pharyngotympanic_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cartilage of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60096 ] + * cartilage of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60096 ] + * cartilago tubae auditivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60096, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cartilago tubae auditoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60096, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pharyngotympanic tube cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60096 ] + * cartilago tubae auditivae; cartilago tubae auditoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cartilage_of_pharyngotympanic_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngotympanic tube](../../UBERON/93/UBERON_0002393.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0007654.md b/md/UBERON/54/UBERON_0007654.md index 11ef940228..d0ba2084b7 100644 --- a/md/UBERON/54/UBERON_0007654.md +++ b/md/UBERON/54/UBERON_0007654.md @@ -7,7 +7,7 @@ ## Synonyms - * stage IV nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28485] + * stage IV nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28485 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0008254.md b/md/UBERON/54/UBERON_0008254.md index 09d2bab775..517dd2a0e6 100644 --- a/md/UBERON/54/UBERON_0008254.md +++ b/md/UBERON/54/UBERON_0008254.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008254 * *Label* = styliform cartilage - * *Definition* = shaft of skeletal tissue that articulates with the lateral border of the carpus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0226313379] + * *Definition* = shaft of skeletal tissue that articulates with the lateral border of the carpus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0226313379 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0008454.md b/md/UBERON/54/UBERON_0008454.md index 604980d6c4..baf952c4ec 100644 --- a/md/UBERON/54/UBERON_0008454.md +++ b/md/UBERON/54/UBERON_0008454.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008454 * *Label* = rectus capitis posterior major - * *Definition* = The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] + * *Definition* = The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] ## Synonyms - * greater posterior rectus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32525] - * rectus capitis posterior major muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] - * musculus rectus capitis posterior major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recti capitis posteriores major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] - * rectus capitis posterior major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] - * rectus capitus posterior major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] - * rectus capitus posterior major muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] - * rectus posterior major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_major_muscle] + * greater posterior rectus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32525 ] + * rectus capitis posterior major muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] + * musculus rectus capitis posterior major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recti capitis posteriores major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] + * rectus capitis posterior major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] + * rectus capitus posterior major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] + * rectus capitus posterior major muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] + * rectus posterior major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_major_muscle ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0008854.md b/md/UBERON/54/UBERON_0008854.md index ba2368deff..67cbb5e1c4 100644 --- a/md/UBERON/54/UBERON_0008854.md +++ b/md/UBERON/54/UBERON_0008854.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008854 * *Label* = root of molar tooth - * *Definition* = the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011165] + * *Definition* = the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011165 ] ## Synonyms - * molar root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85302] - * molar tooth root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85302] + * molar root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85302 ] + * molar tooth root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85302 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [molar tooth](../../UBERON/55/UBERON_0003655.md) and [tooth root](../../UBERON/77/UBERON_0003677.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0008954.md b/md/UBERON/54/UBERON_0008954.md index b6663de30c..bbbc7a7bde 100644 --- a/md/UBERON/54/UBERON_0008954.md +++ b/md/UBERON/54/UBERON_0008954.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008954 * *Label* = lingula of left lung - * *Definition* = Anterioinferior portion of left upper lung lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0123813611[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingula_of_left_lung] + * *Definition* = Anterioinferior portion of left upper lung lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0123813611, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingula_of_left_lung ] * *Comment* = the lingula of the left lung in humans is not normally considered a true lobe. AO notes: in Galen, it is a middle lobe ## Synonyms - * left pulmonary lingula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7433] - * lingula of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7433] + * left pulmonary lingula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7433 ] + * lingula of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7433 ] * lingula of the lung - * middle lobe of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:MiddleLobeOfLeftLung] + * middle lobe of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:MiddleLobeOfLeftLung ] ## Cross-references * FMA:7433 * SCTID:184916009 - * UMLS:C0225740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lingula] + * UMLS:C0225740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lingula ] * Wikipedia:Lingula_of_left_lung * galen:MiddleLobeOfLeftLung * ncithesaurus:Lingula @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0009054.md b/md/UBERON/54/UBERON_0009054.md index a07c8564ec..eb7e5c179e 100644 --- a/md/UBERON/54/UBERON_0009054.md +++ b/md/UBERON/54/UBERON_0009054.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0009554.md b/md/UBERON/54/UBERON_0009554.md index ab143f5085..592715130b 100644 --- a/md/UBERON/54/UBERON_0009554.md +++ b/md/UBERON/54/UBERON_0009554.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009554 * *Label* = obsolete coffin bone - * *Definition* = the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coffin_bone] + * *Definition* = the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coffin_bone ] * *Comment* = Was made obsolete in favor of the more generic grouping ## Synonyms @@ -27,9 +27,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0014485 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009554 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_0009654.md b/md/UBERON/54/UBERON_0009654.md index 39ad419648..0be2c7e2aa 100644 --- a/md/UBERON/54/UBERON_0009654.md +++ b/md/UBERON/54/UBERON_0009654.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009654 * *Label* = alveolar artery - * *Definition* = A branch of the maxillary artery that is found in the gingiva, premolars, and molars. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Alveolar_Artery] + * *Definition* = A branch of the maxillary artery that is found in the gingiva, premolars, and molars. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Alveolar_Artery ] * *Comment* = add child terms ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0001913 - * UMLS:C1706783 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Artery] + * UMLS:C1706783 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Artery ] * ncithesaurus:Alveolar_Artery ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009654 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0009754.md b/md/UBERON/54/UBERON_0009754.md index 2d4cf5ce15..e44395e06c 100644 --- a/md/UBERON/54/UBERON_0009754.md +++ b/md/UBERON/54/UBERON_0009754.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009754 * *Label* = blubber - * *Definition* = a thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blubber] + * *Definition* = a thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blubber ] * *Comment* = Lipid-rich, collagen fiberlaced blubber comprises the hypodermis and covers the whole body, except for parts of the appendages, strongly attached to the musculature and skeleton by highly organized, fan-shaped networks of tendons and ligaments. It can comprise up to 50% of the body mass of some marine mammals during some points in their lives, and can range from two inches (5 cm) thick in dolphins and smaller whales, to more than 12 inches (30 cm)thick in some bigger whales, such as right and bowhead whales ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0009854.md b/md/UBERON/54/UBERON_0009854.md index 6be1362ad9..4f6025c012 100644 --- a/md/UBERON/54/UBERON_0009854.md +++ b/md/UBERON/54/UBERON_0009854.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009854 * *Label* = digestive tract diverticulum - * *Definition* = Branch or outpocketing of the digestive tract. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Branch or outpocketing of the digestive tract. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * diverticulum of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00100316] + * diverticulum of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00100316 ] * intestinal pouch ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) and [sac](../../UBERON/56/UBERON_0009856.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0009954.md b/md/UBERON/54/UBERON_0009954.md index 0339b5fd8b..eb47c175f0 100644 --- a/md/UBERON/54/UBERON_0009954.md +++ b/md/UBERON/54/UBERON_0009954.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010054.md b/md/UBERON/54/UBERON_0010054.md index 8dbd3ddd3f..48b2640f41 100644 --- a/md/UBERON/54/UBERON_0010054.md +++ b/md/UBERON/54/UBERON_0010054.md @@ -17,7 +17,7 @@ ## Superclasses * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) - * [cartilage element](../../UBERON/44/UBERON_0007844.md) + * [pharyngeal arch cartilage](../../UBERON/04/UBERON_0011004.md) * [mesenchyme derived from neural crest](../../UBERON/87/UBERON_0014387.md) * [malleus endochondral element](../../UBERON/18/UBERON_0015018.md) * [develops from](../../RO/02/RO_0002202.md) some [malleus pre-cartilage condensation](../../UBERON/62/UBERON_0006262.md) @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [malleus endochondral element](../../UBERON/18/UBERON_0015018.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010154.md b/md/UBERON/54/UBERON_0010154.md index 99266a42ff..de8d5e2056 100644 --- a/md/UBERON/54/UBERON_0010154.md +++ b/md/UBERON/54/UBERON_0010154.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010154 * *Label* = inner lining mucosa of the abomasum - * *Definition* = the inner mucosa of the fourth stomach chamber of a ruminant produces rennet. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rennet] + * *Definition* = the inner mucosa of the fourth stomach chamber of a ruminant produces rennet. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rennet ] ## Synonyms - * rennet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001168] + * rennet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001168 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010254.md b/md/UBERON/54/UBERON_0010254.md index b5dc364ddc..df1f5eeb34 100644 --- a/md/UBERON/54/UBERON_0010254.md +++ b/md/UBERON/54/UBERON_0010254.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010254 * *Label* = 2nd arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 2nd arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 2nd arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [2nd arch mesenchyme](../../UBERON/89/UBERON_0005689.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010354.md b/md/UBERON/54/UBERON_0010354.md index 0529f1a6ca..42e7f8d753 100644 --- a/md/UBERON/54/UBERON_0010354.md +++ b/md/UBERON/54/UBERON_0010354.md @@ -7,7 +7,7 @@ ## Synonyms * future Reichert's cartilage - * hyoid cartilage pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17351] + * hyoid cartilage pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17351 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010754.md b/md/UBERON/54/UBERON_0010754.md index 4f4862b655..2baa13a203 100644 --- a/md/UBERON/54/UBERON_0010754.md +++ b/md/UBERON/54/UBERON_0010754.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010754 * *Label* = germinal center - * *Definition* = A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Germinal_center[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Germinal_center, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO] ## Synonyms - * central zone of follice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * light zone of follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * reaction center of follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * lymhpoid nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * nodule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * central zone of follice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * light zone of follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * reaction center of follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * lymhpoid nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * nodule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Cross-references @@ -20,7 +20,7 @@ * EV:0100051 * MESH:A10.549.250 * SCTID:64626006 - * UMLS:C0282491 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Germinal_Center] + * UMLS:C0282491 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Germinal_Center ] * Wikipedia:Germinal_center * http://upload.wikimedia.org/wikipedia/commons/6/60/Germinal_center.svg * ncithesaurus:Germinal_Center @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010854.md b/md/UBERON/54/UBERON_0010854.md index e8af3f85c9..d01320c6de 100644 --- a/md/UBERON/54/UBERON_0010854.md +++ b/md/UBERON/54/UBERON_0010854.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010854 * *Label* = skin of front of neck - * *Definition* = A skin of neck that is part of a throat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skin of neck that is part of a throat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * skin of anterior neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23023] - * skin of anterior part of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23023] - * skin of anterior portion of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23023] + * skin of anterior neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23023 ] + * skin of anterior part of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23023 ] + * skin of anterior portion of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23023 ] * skin of throat ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [throat](../../UBERON/41/UBERON_0000341.md) and [skin of neck](../../UBERON/17/UBERON_0001417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0010954.md b/md/UBERON/54/UBERON_0010954.md index cc7b9f67c1..124ad903f4 100644 --- a/md/UBERON/54/UBERON_0010954.md +++ b/md/UBERON/54/UBERON_0010954.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010954 * *Label* = ceratohyoideus muscle - * *Definition* = The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.feedexp.org] + * *Definition* = The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.feedexp.org ] ## Synonyms - * ceratohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] + * ceratohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0011154.md b/md/UBERON/54/UBERON_0011154.md index 40ec312fd5..f781efae16 100644 --- a/md/UBERON/54/UBERON_0011154.md +++ b/md/UBERON/54/UBERON_0011154.md @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that is the region between the chin and the isthmus. (from http://www.briancoad.com/Dictionary/introduction.htm).[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0011754.md b/md/UBERON/54/UBERON_0011754.md index 057823c307..e5d210c16d 100644 --- a/md/UBERON/54/UBERON_0011754.md +++ b/md/UBERON/54/UBERON_0011754.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011754 * *Label* = genital swelling - * *Definition* = Paired structures in the human embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge: in the female, they become the posterior labial commissure; In the male, they become the scrotum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labioscrotal_swelling] + * *Definition* = Paired structures in the human embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge: in the female, they become the posterior labial commissure; In the male, they become the scrotum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labioscrotal_swelling ] * *Comment* = Editor notes: todo - add parthood relationships to tubercles ## Synonyms * labioscrotal swelling - * tuberculum labioscrotale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labioscrotal_swelling[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tuberculum labioscrotale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labioscrotal_swelling, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0011854.md b/md/UBERON/54/UBERON_0011854.md index 62c10c502d..7c15200c8e 100644 --- a/md/UBERON/54/UBERON_0011854.md +++ b/md/UBERON/54/UBERON_0011854.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011854 * *Label* = acinus of areolar gland - * *Definition* = An acinus that is part of a areolar gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a areolar gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * areolar gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62081] + * areolar gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62081 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [areolar gland](../../UBERON/27/UBERON_0011827.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0011954.md b/md/UBERON/54/UBERON_0011954.md index 2d171df009..81056211a8 100644 --- a/md/UBERON/54/UBERON_0011954.md +++ b/md/UBERON/54/UBERON_0011954.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011954 * *Label* = stomach non-glandular region - * *Definition* = A stomach region that has_part a stomach non-glandular epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stomach region that has_part a stomach non-glandular epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [stomach non-glandular epithelium](../../UBERON/40/UBERON_0010040.md) and [stomach region](../../UBERON/34/UBERON_0009034.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011954 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0012054.md b/md/UBERON/54/UBERON_0012054.md index 59c220d9af..fb1eeecc2d 100644 --- a/md/UBERON/54/UBERON_0012054.md +++ b/md/UBERON/54/UBERON_0012054.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012054 * *Label* = myocoele - * *Definition* = The cavity within a myotome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/myocoele] + * *Definition* = The cavity within a myotome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/myocoele ] ## Synonyms @@ -86,8 +86,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The central cavity within the mesoderm is the paired primary or embryonic coelom. Parts of the embryonic coelom often become enclosed in the mesoderm, forming a myocoel within the epimere, a nephrocoel within the mesomere, and simple coelom (body cavity) within the lateral plate mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0012254.md b/md/UBERON/54/UBERON_0012254.md index 31bd64c6ee..2ecd83c5c7 100644 --- a/md/UBERON/54/UBERON_0012254.md +++ b/md/UBERON/54/UBERON_0012254.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012254 * *Label* = abdominal aorta artery - * *Definition* = An artery that originates from the abdominal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Abdominal_aorta#Branches[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An artery that originates from the abdominal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Abdominal_aorta#Branches, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [branching_part_of](../../RO/80/RO_0002380.md) some [abdominal aorta](../../UBERON/16/UBERON_0001516.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012254 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0012354.md b/md/UBERON/54/UBERON_0012354.md index ea362e55b8..42676f38c6 100644 --- a/md/UBERON/54/UBERON_0012354.md +++ b/md/UBERON/54/UBERON_0012354.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012354 * *Label* = acropodium region - * *Definition* = The segment of the autopod that consists of the digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The segment of the autopod that consists of the digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note this class refers to an entire limb segment, not just the bones ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012354 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0013154.md b/md/UBERON/54/UBERON_0013154.md index 537ac055b6..7830320da0 100644 --- a/md/UBERON/54/UBERON_0013154.md +++ b/md/UBERON/54/UBERON_0013154.md @@ -6,7 +6,7 @@ ## Synonyms - * endoderm of maxillary component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16390] + * endoderm of maxillary component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16390 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013154 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0013454.md b/md/UBERON/54/UBERON_0013454.md index 494dd6c316..36a3841c00 100644 --- a/md/UBERON/54/UBERON_0013454.md +++ b/md/UBERON/54/UBERON_0013454.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013454 * *Label* = spheno-maxillary fossa - * *Definition* = The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spheno-maxillary_fossa] + * *Definition* = The speno-maxillary fossa is a small triangular space situated at the angle of the junction of the spheno-maxillary and pterygo-maxillary fissures, and placed beneath the apex of the orbit. It is formed above by the under surface of the body of the sphenoid and by the orbital process of the palate bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spheno-maxillary_fossa ] ## Synonyms ## Cross-references - * UMLS:C1519450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphenomaxillary_Fossa] + * UMLS:C1519450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphenomaxillary_Fossa ] * Wikipedia:Spheno-maxillary_fossa * ncithesaurus:Sphenomaxillary_Fossa @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0013554.md b/md/UBERON/54/UBERON_0013554.md index 213fc59683..074e6403e0 100644 --- a/md/UBERON/54/UBERON_0013554.md +++ b/md/UBERON/54/UBERON_0013554.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013554 * *Label* = Brodmann (1909) area 23 - * *Definition* = Brodmann area 23 (BA23) is a region in the brain corresponding to some portion of the posterior cingulate cortex. It lies between Brodmann area 30 and Brodmann area 31 and is located on the medial wall of the cingulate gyrus between the callosal sulcus and the cingulate sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_23] + * *Definition* = Brodmann area 23 (BA23) is a region in the brain corresponding to some portion of the posterior cingulate cortex. It lies between Brodmann area 30 and Brodmann area 31 and is located on the medial wall of the cingulate gyrus between the callosal sulcus and the cingulate sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_23 ] ## Synonyms - * B09-23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1754] - * Brodmann (1909) area 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1754] - * Brodmann area 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68620] - * Brodmann area 23, ventral posterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1754] - * Granular cingulate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68620] - * Posterior cingulate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68620] - * area 23 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68620] - * area 23 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1754] - * area cingularis posterior ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1754] - * area cingularis posterior ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_23[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1754[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 23 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1018] - * area cingularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1018[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brodmann's area 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1018] + * B09-23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1754 ] + * Brodmann (1909) area 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1754 ] + * Brodmann area 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68620 ] + * Brodmann area 23, ventral posterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1754 ] + * Granular cingulate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68620 ] + * Posterior cingulate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68620 ] + * area 23 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68620 ] + * area 23 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1754 ] + * area cingularis posterior ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1754 ] + * area cingularis posterior ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_23, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1754, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 23 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1018 ] + * area cingularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1018, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brodmann's area 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1018 ] ## Cross-references * FMA:68620 * NIF_GrossAnatomy:birnlex_1754 - * NeuroNames:1018 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1754] - * UMLS:C1272541 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1754] + * NeuroNames:1018 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1754 ] + * UMLS:C1272541 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1754 ] * Wikipedia:Brodmann_area_23 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0013754.md b/md/UBERON/54/UBERON_0013754.md index f740d917df..ff1485c991 100644 --- a/md/UBERON/54/UBERON_0013754.md +++ b/md/UBERON/54/UBERON_0013754.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0014454.md b/md/UBERON/54/UBERON_0014454.md index a8b25e25d4..a593a161c9 100644 --- a/md/UBERON/54/UBERON_0014454.md +++ b/md/UBERON/54/UBERON_0014454.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014454 * *Label* = visceral abdominal adipose tissue - * *Definition* = Subcutaneous adipose tissue that is located in the peritoneal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:paula[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/259] + * *Definition* = Subcutaneous adipose tissue that is located in the peritoneal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:paula, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/259 ] ## Synonyms - * abdominal fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] + * abdominal fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] * intra-abdominal adipose tissue - * intra-abdominal fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] - * organ fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] - * visceral adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] - * visceral fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004041] + * intra-abdominal fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] + * organ fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] + * visceral adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] + * visceral fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004041 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [located_in](../../RO/25/RO_0001025.md) some [peritoneal cavity](../../UBERON/79/UBERON_0001179.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) and [surrounds](../../RO/21/RO_0002221.md) some [viscus](../../UBERON/75/UBERON_0002075.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively[BTO:0004041]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014454 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0014554.md b/md/UBERON/54/UBERON_0014554.md index 6b186a209b..7c1505be87 100644 --- a/md/UBERON/54/UBERON_0014554.md +++ b/md/UBERON/54/UBERON_0014554.md @@ -6,8 +6,8 @@ ## Synonyms - * CA1 part of stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4119[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA1 stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4119] + * CA1 part of stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4119, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA1 stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4119 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum radiatum](../../UBERON/72/UBERON_0005372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014554 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0014754.md b/md/UBERON/54/UBERON_0014754.md index aa7b244a39..f180b0ee05 100644 --- a/md/UBERON/54/UBERON_0014754.md +++ b/md/UBERON/54/UBERON_0014754.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014754 * *Label* = P4 area of pallium (Myxiniformes) - * *Definition* = Area directly deep to the P3 area of pallium in hagfishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Area directly deep to the P3 area of pallium in hagfishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014754 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0014854.md b/md/UBERON/54/UBERON_0014854.md index afd1c74cd4..cd45e6585a 100644 --- a/md/UBERON/54/UBERON_0014854.md +++ b/md/UBERON/54/UBERON_0014854.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014854 * *Label* = anterior leaflet of mitral valve - * *Definition* = Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] + * *Definition* = Leaflet of mitral valve which is attached to the anterior head of the posterior papillary muscle of left ventricle through the chorda tendinea of the left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] ## Synonyms - * anterior cusp of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * anterior mitral leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * anteromedial leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * aortic leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * aortic leaflet of the left-sided mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad] - * greater leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * septal leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7242] - * anterior leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad] - * anteromedial leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad] + * anterior cusp of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * anterior mitral leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * anteromedial leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * aortic leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * aortic leaflet of the left-sided mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad ] + * greater leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * septal leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7242 ] + * anterior leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad ] + * anteromedial leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014854 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_0015054.md b/md/UBERON/54/UBERON_0015054.md index 8e240ea220..59f0271c1e 100644 --- a/md/UBERON/54/UBERON_0015054.md +++ b/md/UBERON/54/UBERON_0015054.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015054 * *Label* = iliac endochondral element - * *Definition* = A iliac bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A iliac bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * iliac element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * iliac skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * iliac element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * iliac skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [iliac cartilage element](../../UBERON/14/UBERON_0010714.md)or[iliac pre-cartilage condensation](../../UBERON/47/UBERON_0006247.md)or[ilium](../../UBERON/73/UBERON_0001273.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015054 + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2000454.md b/md/UBERON/54/UBERON_2000454.md index d067c0dafc..a100ceac2a 100644 --- a/md/UBERON/54/UBERON_2000454.md +++ b/md/UBERON/54/UBERON_2000454.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2000654.md b/md/UBERON/54/UBERON_2000654.md index cd077995f5..57b85983cf 100644 --- a/md/UBERON/54/UBERON_2000654.md +++ b/md/UBERON/54/UBERON_2000654.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2000754.md b/md/UBERON/54/UBERON_2000754.md index b3e74a5123..4767a1ca0a 100644 --- a/md/UBERON/54/UBERON_2000754.md +++ b/md/UBERON/54/UBERON_2000754.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000754[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000754, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_2000854.md b/md/UBERON/54/UBERON_2000854.md index faf9adab99..a78afc7245 100644 --- a/md/UBERON/54/UBERON_2000854.md +++ b/md/UBERON/54/UBERON_2000854.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000854 * *Label* = somite 21 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 21 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2000954.md b/md/UBERON/54/UBERON_2000954.md index 05e1f130a6..47562b5dd1 100644 --- a/md/UBERON/54/UBERON_2000954.md +++ b/md/UBERON/54/UBERON_2000954.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000954 * *Label* = sclerotome somite 15 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001054.md b/md/UBERON/54/UBERON_2001054.md index d8c5befae3..e1fa828ca6 100644 --- a/md/UBERON/54/UBERON_2001054.md +++ b/md/UBERON/54/UBERON_2001054.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001054 * *Label* = lateral dorsal aorta - * *Definition* = Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * LDA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001054] + * LDA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001054 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001154.md b/md/UBERON/54/UBERON_2001154.md index 74fd49db81..93f8e1b249 100644 --- a/md/UBERON/54/UBERON_2001154.md +++ b/md/UBERON/54/UBERON_2001154.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001254.md b/md/UBERON/54/UBERON_2001254.md index 4b37f9cd16..b356f01a96 100644 --- a/md/UBERON/54/UBERON_2001254.md +++ b/md/UBERON/54/UBERON_2001254.md @@ -6,7 +6,7 @@ ## Synonyms - * abdominal scutes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001254[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * abdominal scutes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001254, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001354.md b/md/UBERON/54/UBERON_2001354.md index cea9d8ef78..f79568d058 100644 --- a/md/UBERON/54/UBERON_2001354.md +++ b/md/UBERON/54/UBERON_2001354.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_2001554.md b/md/UBERON/54/UBERON_2001554.md index 6ad7703e69..35ada8f708 100644 --- a/md/UBERON/54/UBERON_2001554.md +++ b/md/UBERON/54/UBERON_2001554.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001554 * *Label* = obsolete lepidotrichium - * *Definition* = Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001554] + * fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001554 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000172 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_2001654.md b/md/UBERON/54/UBERON_2001654.md index b48f708363..0d7552d9b5 100644 --- a/md/UBERON/54/UBERON_2001654.md +++ b/md/UBERON/54/UBERON_2001654.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001654 * *Label* = upper pharyngeal 4 tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * upper pharyngeal 4 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001654] + * upper pharyngeal 4 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001654 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001754.md b/md/UBERON/54/UBERON_2001754.md index e929491629..c4fc413144 100644 --- a/md/UBERON/54/UBERON_2001754.md +++ b/md/UBERON/54/UBERON_2001754.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2001854.md b/md/UBERON/54/UBERON_2001854.md index 70e28891c7..f18a541136 100644 --- a/md/UBERON/54/UBERON_2001854.md +++ b/md/UBERON/54/UBERON_2001854.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001854 * *Label* = postcleithrum 3 - * *Definition* = Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2002054.md b/md/UBERON/54/UBERON_2002054.md index a657a888a9..ba2d1f73b9 100644 --- a/md/UBERON/54/UBERON_2002054.md +++ b/md/UBERON/54/UBERON_2002054.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002054 * *Label* = vertebra 5-vertebra 6 joint - * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [vertebral element 5](../../UBERON/32/UBERON_2001732.md) and [core#connects](../../ts/core#connects.md) some [vertebral element 6](../../UBERON/80/UBERON_2001980.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2002154.md b/md/UBERON/54/UBERON_2002154.md index 4bebe31ec6..26e18b9864 100644 --- a/md/UBERON/54/UBERON_2002154.md +++ b/md/UBERON/54/UBERON_2002154.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002154 * *Label* = opercular cavity - * *Definition* = Anatomical space which is located beneath the operculum and external to the gills. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anatomical space which is located beneath the operculum and external to the gills. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2005054.md b/md/UBERON/54/UBERON_2005054.md index ca8b7fe790..6bd1d5afa4 100644 --- a/md/UBERON/54/UBERON_2005054.md +++ b/md/UBERON/54/UBERON_2005054.md @@ -6,7 +6,7 @@ ## Synonyms - * IOC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005054] + * IOC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005054 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_2007054.md b/md/UBERON/54/UBERON_2007054.md index af8588795b..38d58f3139 100644 --- a/md/UBERON/54/UBERON_2007054.md +++ b/md/UBERON/54/UBERON_2007054.md @@ -6,10 +6,10 @@ ## Synonyms - * anterior hub of the semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007054] - * anterior pillar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007054] - * anterior pillar of the semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007054] - * horizontal hub [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007054] + * anterior hub of the semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007054 ] + * anterior pillar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007054 ] + * anterior pillar of the semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007054 ] + * horizontal hub [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007054 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3000254.md b/md/UBERON/54/UBERON_3000254.md index c4b3271396..38e31a139c 100644 --- a/md/UBERON/54/UBERON_3000254.md +++ b/md/UBERON/54/UBERON_3000254.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000254 * *Label* = lamella alaris - * *Definition* = Dorsal plate of the squamosal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal plate of the squamosal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * horizontal arm of squamosal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000254] + * horizontal arm of squamosal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000254 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3000454.md b/md/UBERON/54/UBERON_3000454.md index 7a925141f4..67362e1983 100644 --- a/md/UBERON/54/UBERON_3000454.md +++ b/md/UBERON/54/UBERON_3000454.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000454 * *Label* = postnasal wall - * *Definition* = Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3000654.md b/md/UBERON/54/UBERON_3000654.md index 42d1a78f79..320c6d5e1f 100644 --- a/md/UBERON/54/UBERON_3000654.md +++ b/md/UBERON/54/UBERON_3000654.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000654 * *Label* = pars jugalis - * *Definition* = Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3000954.md b/md/UBERON/54/UBERON_3000954.md index bf60046aed..e0ae29f839 100644 --- a/md/UBERON/54/UBERON_3000954.md +++ b/md/UBERON/54/UBERON_3000954.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000954 * *Label* = hypobranchial I - * *Definition* = Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3010454.md b/md/UBERON/54/UBERON_3010454.md index 35f1f98a56..eea751b2a3 100644 --- a/md/UBERON/54/UBERON_3010454.md +++ b/md/UBERON/54/UBERON_3010454.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3010554.md b/md/UBERON/54/UBERON_3010554.md index 768ff4fd64..8a889a0c45 100644 --- a/md/UBERON/54/UBERON_3010554.md +++ b/md/UBERON/54/UBERON_3010554.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010554 * *Label* = obsolete ectodermal cell - * *Definition* = A cell of the outer of the three germ layers of the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A cell of the outer of the three germ layers of the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * ectoderm cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010554] + * ectoderm cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010554 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000221 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/54/UBERON_3010654.md b/md/UBERON/54/UBERON_3010654.md index d23c553682..173e880997 100644 --- a/md/UBERON/54/UBERON_3010654.md +++ b/md/UBERON/54/UBERON_3010654.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010654 * *Label* = rectus cervicis - * *Definition* = Retracts the hyoid and, therefore, the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Retracts the hyoid and, therefore, the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_3010754.md b/md/UBERON/54/UBERON_3010754.md index 9fe3ea95a7..459524e290 100644 --- a/md/UBERON/54/UBERON_3010754.md +++ b/md/UBERON/54/UBERON_3010754.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010754 * *Label* = ramus recurrens - * *Definition* = Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_4200054.md b/md/UBERON/54/UBERON_4200054.md index 96c16f9d73..22c07b0c16 100644 --- a/md/UBERON/54/UBERON_4200054.md +++ b/md/UBERON/54/UBERON_4200054.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/54/UBERON_4200154.md b/md/UBERON/54/UBERON_4200154.md index a3300cfa02..a709acb3b4 100644 --- a/md/UBERON/54/UBERON_4200154.md +++ b/md/UBERON/54/UBERON_4200154.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0000055.md b/md/UBERON/55/UBERON_0000055.md index abcd86dc52..725dc18212 100644 --- a/md/UBERON/55/UBERON_0000055.md +++ b/md/UBERON/55/UBERON_0000055.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000055 * *Label* = vessel - * *Definition* = A tubular structure that contains, conveys body fluid, such as blood or lymph. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A tubular structure that contains, conveys body fluid, such as blood or lymph. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = compare with UBERON:0008782 ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0000155.md b/md/UBERON/55/UBERON_0000155.md index 5f257feda7..c526b6024a 100644 --- a/md/UBERON/55/UBERON_0000155.md +++ b/md/UBERON/55/UBERON_0000155.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000155 * *Label* = theca cell layer - * *Definition* = A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Theca_of_follicle] + * *Definition* = A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Theca_of_follicle ] ## Synonyms * layer of theca cells * theca cell layer of ovarian follicle * theca of follicle - * thecal cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001113] - * theca folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Theca_of_follicle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * theca folliculi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * thecal cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001113 ] + * theca folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Theca_of_follicle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * theca folliculi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0000355.md b/md/UBERON/55/UBERON_0000355.md index 438b92ecff..864a0d4139 100644 --- a/md/UBERON/55/UBERON_0000355.md +++ b/md/UBERON/55/UBERON_0000355.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000355 * *Label* = pharyngeal mucosa - * *Definition* = A mucosa that is part of a pharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a pharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Mucous membrane of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55031] - * mucosa of organ of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa pharyngea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55031[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Mucous membrane of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55031 ] + * mucosa of organ of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa pharyngea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55031, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tunica mucosa pharyngis - * mucous membrane of the pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001047] + * mucous membrane of the pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001047 ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003344 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0000955.md b/md/UBERON/55/UBERON_0000955.md index 3e5186a57e..25c82a2cdf 100644 --- a/md/UBERON/55/UBERON_0000955.md +++ b/md/UBERON/55/UBERON_0000955.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000955 * *Label* = brain - * *Definition* = The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brain[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300] + * *Definition* = The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals. Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brain, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300 ] * *Comment* = include synganglion? ## Synonyms - * encephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000142] - * suprasegmental levels of nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:21] - * suprasegmental structures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:21] + * encephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000142 ] + * suprasegmental levels of nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:21 ] + * suprasegmental structures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:21 ] * synganglion - * the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:21] + * the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:21 ] ## Cross-references @@ -37,13 +37,13 @@ * MESH:A08.186.211 * MIAA:0000098 * NIF_GrossAnatomy:birnlex_796 - * NeuroNames:21 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_796] + * NeuroNames:21 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_796 ] * OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA * SCTID:258335003 * TAO:0000008 - * UMLS:C0006104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_796] - * UMLS:C0006104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain] - * UMLS:C1269537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_796] + * UMLS:C0006104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_796 ] + * UMLS:C0006104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain ] + * UMLS:C1269537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_796 ] * VHOG:0000157 * Wikipedia:Brain * XAO:0000010 @@ -78,8 +78,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO) * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001055.md b/md/UBERON/55/UBERON_0001055.md index 05c5ed974d..0287f3d51c 100644 --- a/md/UBERON/55/UBERON_0001055.md +++ b/md/UBERON/55/UBERON_0001055.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001055 * *Label* = obsolete ureter - * *Definition* = the tube that conducts the urine from the renal pelvis to the bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000534] + * *Definition* = the tube that conducts the urine from the renal pelvis to the bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000534 ] ## Synonyms @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000056 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000057 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001055 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_0001155.md b/md/UBERON/55/UBERON_0001155.md index 56cfacf41c..54986f2a50 100644 --- a/md/UBERON/55/UBERON_0001155.md +++ b/md/UBERON/55/UBERON_0001155.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001155 * *Label* = colon - * *Definition* = Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Colon_(anatomy)[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates[ZFIN]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Colon_(anatomy), [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO: abstract this such that it legitimately covers all vertebrates ## Synonyms @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA * SCTID:302508007 * TAO:0000706 - * UMLS:C0009368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Colon] + * UMLS:C0009368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Colon ] * VHOG:0000648 * Wikipedia:Colon_(anatomy) * XAO:0000243 @@ -62,8 +62,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = colonic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001255.md b/md/UBERON/55/UBERON_0001255.md index 4dbede2b31..8704097cd0 100644 --- a/md/UBERON/55/UBERON_0001255.md +++ b/md/UBERON/55/UBERON_0001255.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001255 * *Label* = urinary bladder - * *Definition* = distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urinary_bladder] + * *Definition* = distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urinary_bladder ] ## Synonyms * bladder - * vesica urinaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urinary_bladder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urocyst [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urinary_bladder] - * vesica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001418] + * vesica urinaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urinary_bladder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urocyst [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urinary_bladder ] + * vesica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001418 ] ## Cross-references @@ -30,7 +30,7 @@ * MIAA:0000122 * OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA * SCTID:302512001 - * UMLS:C0005682 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder] + * UMLS:C0005682 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder ] * VHOG:0000740 * Wikipedia:Urinary_bladder * XAO:0000154 @@ -69,8 +69,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In tetrapods, the urinary bladder arises as an outpocketing of the cloaca. (...) The tetrapod urinary bladder appears first among amphibians and is present in Sphenodon, turtles, most lizards, ostriches among birds, and all mammals.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = vesical * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001355.md b/md/UBERON/55/UBERON_0001355.md index a57b015feb..ebbe9d8ded 100644 --- a/md/UBERON/55/UBERON_0001355.md +++ b/md/UBERON/55/UBERON_0001355.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001355 * *Label* = deep femoral artery - * *Definition* = The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_femoral_artery] + * *Definition* = The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_femoral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:20741 * MA:0002027 * SCTID:181348000 - * UMLS:C0226455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Femoral_Artery] + * UMLS:C0226455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Femoral_Artery ] * Wikipedia:Deep_femoral_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray548.png/200px-Gray548.png * ncithesaurus:Deep_Femoral_Artery @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001455.md b/md/UBERON/55/UBERON_0001455.md index 3a6251b3d5..e114d6840b 100644 --- a/md/UBERON/55/UBERON_0001455.md +++ b/md/UBERON/55/UBERON_0001455.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001455 * *Label* = cuboid bone - * *Definition* = A tarsal bone that is formed from distal tarsals 4 and 5. In the human body, the cuboid bone is one of the seven tarsal bones of the pes. [WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuboid_bone] + * *Definition* = A tarsal bone that is formed from distal tarsals 4 and 5. In the human body, the cuboid bone is one of the seven tarsal bones of the pes. [WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuboid_bone ] ## Synonyms * cuboid * cuboideum - * os cuboideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002357] + * os cuboideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002357 ] * foot distal carpal bone 4 and 5 - * os cuboideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuboid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os cuboideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuboid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:24527 * MA:0001355 * SCTID:182101009 - * UMLS:C0376381 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cuboid_Bone] + * UMLS:C0376381 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cuboid_Bone ] * Wikipedia:Cuboid_bone * galen:Cuboid * http://upload.wikimedia.org/wikipedia/commons/1/18/Gray274.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001555.md b/md/UBERON/55/UBERON_0001555.md index 8887fd2add..2614fa2311 100644 --- a/md/UBERON/55/UBERON_0001555.md +++ b/md/UBERON/55/UBERON_0001555.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001555 * *Label* = digestive tract - * *Definition* = Tube extending from the mouth to the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855] + * *Definition* = Tube extending from the mouth to the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855 ] * *Comment* = Terminology notes: we following Kardong in naming the entire tube from mouth to anus the alimentary canal. Kardong calls the portion of this tract that excludes buccal cavity and pharynx the 'alimentary canal', consider adding an extra class for this. AO notes: FMA also has a term 'gastrointestinal tract', but this includes the liver. ## Synonyms * digestive tube - * enteric tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000112] + * enteric tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000112 ] * gut * alimentary canal * alimentary tract - * digestive canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000058] + * digestive canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000058 ] * gut tube ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA * TAO:0000112 * TGMA:0001819 - * UMLS:C0017189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrointestinal_Tract] + * UMLS:C0017189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrointestinal_Tract ] * VHOG:0000309 * WBbt:0005743 * ZFA:0000112 @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The alimentary or digestive tract, and associated organs.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The bilaterian gut is typically a complete tube that opens to the exterior at both ends. It consists of mouth, foregut, midgut, hindgut, and anus (reference 1); Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001655.md b/md/UBERON/55/UBERON_0001655.md index 4a1df61856..59573a3f64 100644 --- a/md/UBERON/55/UBERON_0001655.md +++ b/md/UBERON/55/UBERON_0001655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001655 * *Label* = submental vein - * *Definition* = A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Submental_Vein] + * *Definition* = A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Submental_Vein ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:50925 * MA:0002223 * SCTID:152309009 - * UMLS:C0226541 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submental_Vein] + * UMLS:C0226541 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submental_Vein ] * ncithesaurus:Submental_Vein ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001755.md b/md/UBERON/55/UBERON_0001755.md index 1947b4bb56..421afe9e71 100644 --- a/md/UBERON/55/UBERON_0001755.md +++ b/md/UBERON/55/UBERON_0001755.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001755 * *Label* = distal part of styloid process of temporal bone - * *Definition* = A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Stylohyal] + * *Definition* = A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Stylohyal ] * *Comment* = TODO - check ## Synonyms - * distal part of styloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56472] - * stylohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56472] + * distal part of styloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56472 ] + * stylohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56472 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001855.md b/md/UBERON/55/UBERON_0001855.md index 7d7a561598..d019dd7c65 100644 --- a/md/UBERON/55/UBERON_0001855.md +++ b/md/UBERON/55/UBERON_0001855.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001855 * *Label* = cochlear duct of membranous labyrinth - * *Definition* = An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_duct] + * *Definition* = An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_duct ] * *Comment* = TODO: check cochlear duct vs cochlear aqueduct vs scala media ## Synonyms - * Reissner's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61119] - * Reissners canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2562] - * cochlea duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2562] + * Reissner's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61119 ] + * Reissners canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2562 ] + * cochlea duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2562 ] * cochlear duct - * scala medias [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2562] + * scala medias [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2562 ] * cochlear aqueduct - * ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001692[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * membranous cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001692] - * scala media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_duct] - * scala of Loewenberg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001692] + * ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001692, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * membranous cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001692 ] + * scala media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_duct ] + * scala of Loewenberg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001692 ] ## Cross-references @@ -33,9 +33,9 @@ * MESH:A09.246.631.246.292 * NIF_GrossAnatomy:birnlex_2562 * SCTID:279849006 - * UMLS:C1281166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2562] - * UMLS:C1323110 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2562] - * UMLS:C1323110 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cochlear_Duct] + * UMLS:C1281166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2562 ] + * UMLS:C1323110 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2562 ] + * UMLS:C1323110 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cochlear_Duct ] * VHOG:0000507 * Wikipedia:Cochlear_duct * http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png @@ -64,8 +64,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The coiled portion of the membranous labyrinth located inside the cochlea. It contains endolymph. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus. (...) In all gnathostomes, the utriculus connects ventrally with a larger sac, called the sacculus (...) In most groups of gnathostomes, the caudoventral evagination of the sacculus forms a small lagena, and in some diapsids and mammals the lagena develops into a longer duct. The lagena becomes greatly elongated in therians and coils to form the cochlear duct.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0001955.md b/md/UBERON/55/UBERON_0001955.md index b7eff24e1a..45855f96d2 100644 --- a/md/UBERON/55/UBERON_0001955.md +++ b/md/UBERON/55/UBERON_0001955.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001955 * *Label* = epithelium of respiratory bronchiole - * *Definition* = An epithelium that is part of a respiratory bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a respiratory bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchiolus respiratorius epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus respiratorius epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of respiratory bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory bronchiole epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus respiratorius epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus respiratorius epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of respiratory bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory bronchiole epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * respiratory bronchiole epithelium ## Cross-references * FMA:62498 * MA:0001773 - * UMLS:C1179179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_Bronchiole_Epithelium] + * UMLS:C1179179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_Bronchiole_Epithelium ] * ncithesaurus:Respiratory_Bronchiole_Epithelium ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory bronchiole](../../UBERON/88/UBERON_0002188.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002055.md b/md/UBERON/55/UBERON_0002055.md index 68017b8e65..a1954d9365 100644 --- a/md/UBERON/55/UBERON_0002055.md +++ b/md/UBERON/55/UBERON_0002055.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002055 * *Label* = zona reticularis of adrenal gland - * *Definition* = The zona reticularis is the innermost layer of the adrenal cortex, lying deep to the zona fasciculata and superficial to the adrenal medulla. The cells are arranged cords that project in different directions giving a net-like appearance (L. reticulum - net). Cells in the zona reticularis produce precursor androgens including dehydroepiandrosterone (DHEA) and androstenedione from cholesterol. DHEA is further converted to DHEA-sulfate via a sulfotransferase, SULT2A1. These precursors are not further converted in the adrenal cortex as the cells lack 3?-hydroxysteroid dehydrogenase. Instead, they are released into the blood stream and taken up in the testis and ovaries to produce testosterone and the estrogens respectively. In some animals like rodents, the reticularis layer does contain 3?-hydroxysteroid dehydrogenase, which along with other enzymes present results in the production of corticosteroids like the fasciculata. In rodents too, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol as in the human. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_reticularis] + * *Definition* = The zona reticularis is the innermost layer of the adrenal cortex, lying deep to the zona fasciculata and superficial to the adrenal medulla. The cells are arranged cords that project in different directions giving a net-like appearance (L. reticulum - net). Cells in the zona reticularis produce precursor androgens including dehydroepiandrosterone (DHEA) and androstenedione from cholesterol. DHEA is further converted to DHEA-sulfate via a sulfotransferase, SULT2A1. These precursors are not further converted in the adrenal cortex as the cells lack 3?-hydroxysteroid dehydrogenase. Instead, they are released into the blood stream and taken up in the testis and ovaries to produce testosterone and the estrogens respectively. In some animals like rodents, the reticularis layer does contain 3?-hydroxysteroid dehydrogenase, which along with other enzymes present results in the production of corticosteroids like the fasciculata. In rodents too, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol as in the human. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_reticularis ] ## Synonyms - * adrenal gland zona reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001892] + * adrenal gland zona reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001892 ] * zona reticularis * zona reticularis of suprarenal gland @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002155.md b/md/UBERON/55/UBERON_0002155.md index 90d63d39e1..cac69eb232 100644 --- a/md/UBERON/55/UBERON_0002155.md +++ b/md/UBERON/55/UBERON_0002155.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002155 * *Label* = gigantocellular nucleus - * *Definition* = The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gigantocellular_nucleus] + * *Definition* = The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gigantocellular_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * gigantocellular reticular nucleus - * nucleus gigantocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72576[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticularis gigantocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005001] + * nucleus gigantocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72576, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticularis gigantocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005001 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002255.md b/md/UBERON/55/UBERON_0002255.md index 729b039874..e8e6c1b128 100644 --- a/md/UBERON/55/UBERON_0002255.md +++ b/md/UBERON/55/UBERON_0002255.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002255 * *Label* = vomeronasal organ - * *Definition* = The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vomeronasal_organ] + * *Definition* = The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vomeronasal_organ ] * *Comment* = Taxon notes: Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.) ## Synonyms - * Jacobson's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000272] + * Jacobson's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000272 ] * organon vomeronasale - * organum vomeronasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002608] - * VNO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000665] + * organum vomeronasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002608 ] + * VNO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000665 ] * organ of Jacobsen - * organum vomeronasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vomeronasal_organ[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organum vomeronasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vomeronasal_organ, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An organ thought to supplement the olfactory system in receiving pheromonic communication. The sensory part of the organ is in two long, thin sacs, situated on either side of the nasal septum at its base. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the vomeronasal organ is known only in some tetrapods. It is absent in most turtles, crocodiles, birds, some bats, and aquatic mammals. In amphibians, it is in a recessed area off the main nasal cavity. (...) In mammals possesing this organ, it is an isolated area of olfactory membrane within the nasal cavity that is usually connected to the mouth via the nasopalatine duct (reference 1); The opinions concerning the presence and functioning of the vomeronasal organ in humans are controversial. The vomeronasal cavities appear early in human foetuses. (...) Historical examination of the nasal septum revealed the presence of vomeronasal cavities in approximately 70% of adults. In contrast to the situation in other mammals, the organ is not supported by a rigid tube of bone or cartilage (reference 2); (...) the best evidence for the homology of the human VNO to that of other primates (and of mammals in general) is ontogenetic in nature, based on a common embryonic origin from a thickening (vomeronasal primordium) on the medial aspect of each olfactory pit (reference 3); (...) suggesting that lungfish possess a region homologous to the accessory olfactory bulb of tetrapods. Based on these results, it seems appropriate to refer to the recess epithelium as a primordium of the vomeronasal organ (reference 4). [debated][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002355.md b/md/UBERON/55/UBERON_0002355.md index c390a6e683..e1eba31ea5 100644 --- a/md/UBERON/55/UBERON_0002355.md +++ b/md/UBERON/55/UBERON_0002355.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002355 * *Label* = pelvis - * *Definition* = Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9578[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvis] + * *Definition* = Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9578, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvis ] * *Comment* = Note that MA and FMA differ in what they consider to be parts of the pelvis. MA includes ureter, urethra, urinary bladder, reproductive organs ## Synonyms - * lesser pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9578] + * lesser pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9578 ] * pelvic region * pelvis region - * true pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9578] + * true pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9578 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A01.673 * OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA * SCTID:229765004 - * UMLS:C0030797 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pelvis] + * UMLS:C0030797 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pelvis ] * Wikipedia:Pelvis * galen:Pelvis * http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png @@ -51,8 +51,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pelvic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002455.md b/md/UBERON/55/UBERON_0002455.md index b2e3cac805..dc451e2d8c 100644 --- a/md/UBERON/55/UBERON_0002455.md +++ b/md/UBERON/55/UBERON_0002455.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002455 * *Label* = common plantar digital arteries - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_plantar_digital_arteries] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_plantar_digital_arteries ] ## Synonyms - * arteriae digitales plantares communes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70821[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae digitales plantares communes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70821, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * common plantar digital arteries - * common plantar digital arteries set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70821] - * arteriae digitales plantares communes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_plantar_digital_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of common plantar digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70821] + * common plantar digital arteries set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70821 ] + * arteriae digitales plantares communes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_plantar_digital_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of common plantar digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70821 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002555.md b/md/UBERON/55/UBERON_0002555.md index c7579a8f30..ddf0c34f97 100644 --- a/md/UBERON/55/UBERON_0002555.md +++ b/md/UBERON/55/UBERON_0002555.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002555 * *Label* = intermediate hypothalamic region - * *Definition* = the portion of the hypothalamus located generally internal to the region of the infundibulum. In humans it contains the following nuclei: dorsal nucleus [TA] (nucleus dorsalis hypothalami [TA]), parts of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), arcuate nucleus [TA] (nucleus arcuatus [TA]), posterior periventricular nucleus [TA] (nucleus periventricularis posterior [TA]), retrochiasmatic area [TA] (area retrochiasmatica [TA]), lateral tuberal nuclei [TA] (nuclei tuberales laterales [TA]), and ventromedial nucleus [TA] (nucleus ventromedialis hypothalami [TA]). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com] + * *Definition* = the portion of the hypothalamus located generally internal to the region of the infundibulum. In humans it contains the following nuclei: dorsal nucleus [TA] (nucleus dorsalis hypothalami [TA]), parts of the dorsomedial nucleus [TA] (nucleus dorsomedialis [TA]), arcuate nucleus [TA] (nucleus arcuatus [TA]), posterior periventricular nucleus [TA] (nucleus periventricularis posterior [TA]), retrochiasmatic area [TA] (area retrochiasmatica [TA]), lateral tuberal nuclei [TA] (nuclei tuberales laterales [TA]), and ventromedial nucleus [TA] (nucleus ventromedialis hypothalami [TA]). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com ] * *Comment* = See notes for pars intermedia of adenohypophysis ## Synonyms - * area hypothalamica intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62028[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * intermediate hypothalamic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62028] - * IHR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1015[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * intermediate hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0006000] - * regio hypothalamica intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:392[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area hypothalamica intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62028, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * intermediate hypothalamic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62028 ] + * IHR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1015, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * intermediate hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0006000 ] + * regio hypothalamica intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:392, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:IHR * FMA:62028 * NIF_GrossAnatomy:birnlex_1015 - * NeuroNames:392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1015] + * NeuroNames:392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1015 ] * TAO:0006000 - * UMLS:C0020669 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1015] + * UMLS:C0020669 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1015 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002655.md b/md/UBERON/55/UBERON_0002655.md index 95f9275e0f..89eeca4648 100644 --- a/md/UBERON/55/UBERON_0002655.md +++ b/md/UBERON/55/UBERON_0002655.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002655 * *Label* = body of lateral ventricle - * *Definition* = Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1287] + * *Definition* = Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1287 ] ## Synonyms - * central part of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83703] - * lateral ventricular body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83703] - * pars centralis ventriculi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83703[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basolateral amygdaloid nucleus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLV] - * basolateral nucleus of the amygdala ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLV] - * caudoventrolateral reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CVL] - * pars centralis ventriculi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_lateral_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral basolateral amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLV] + * central part of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83703 ] + * lateral ventricular body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83703 ] + * pars centralis ventriculi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83703, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basolateral amygdaloid nucleus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLV ] + * basolateral nucleus of the amygdala ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLV ] + * caudoventrolateral reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CVL ] + * pars centralis ventriculi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_lateral_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral basolateral amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLV ] ## Cross-references @@ -24,8 +24,8 @@ * NIF_GrossAnatomy:birnlex_1287 * NeuroNames:221 * SCTID:279246005 - * UMLS:C0152280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1287] - * UMLS:C0152280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Body_of_the_Lateral_Ventricle] + * UMLS:C0152280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1287 ] + * UMLS:C0152280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Body_of_the_Lateral_Ventricle ] * Wikipedia:Body_of_lateral_ventricle * http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted][Wikipedia:Body_of_lateral_ventricle]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002755.md b/md/UBERON/55/UBERON_0002755.md index 227c1885c4..bd8568fdc5 100644 --- a/md/UBERON/55/UBERON_0002755.md +++ b/md/UBERON/55/UBERON_0002755.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002755 * *Label* = pyramidal decussation - * *Definition* = Part of medulla comprising a white matter structure containing nerve fibers of the pyramidal tract crossing from one side of the brain to the other (MM) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1594] + * *Definition* = Part of medulla comprising a white matter structure containing nerve fibers of the pyramidal tract crossing from one side of the brain to the other (MM) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1594 ] ## Synonyms - * corticospinal decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * decussatio pyramidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio pyramidum medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation of corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * decussation of pyramidal tract fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * decussation of pyramids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * decussation of pyramids of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * decussation of the pyramidal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1594] - * motor decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * motor decussation of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72633] - * pyramidal decussation (pourfour du petit) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1594] - * decussatio motoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:799[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyramidal decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Decussation_of_pyramids] + * corticospinal decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * decussatio pyramidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio pyramidum medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation of corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * decussation of pyramidal tract fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * decussation of pyramids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * decussation of pyramids of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * decussation of the pyramidal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1594 ] + * motor decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * motor decussation of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72633 ] + * pyramidal decussation (pourfour du petit) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1594 ] + * decussatio motoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:799, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyramidal decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Decussation_of_pyramids ] ## Cross-references @@ -28,9 +28,9 @@ * BM:Me-PyX * FMA:72633 * NIF_GrossAnatomy:birnlex_1594 - * NeuroNames:799 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1594] + * NeuroNames:799 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1594 ] * SCTID:369058001 - * UMLS:C0011128 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1594] + * UMLS:C0011128 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1594 ] * Wikipedia:Decussation_of_pyramids * http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002855.md b/md/UBERON/55/UBERON_0002855.md index fef60b6aa0..5029ed742c 100644 --- a/md/UBERON/55/UBERON_0002855.md +++ b/md/UBERON/55/UBERON_0002855.md @@ -6,15 +6,15 @@ ## Synonyms - * twelfth thoracic dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6332] - * twelfth thoracic spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6332] + * twelfth thoracic dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6332 ] + * twelfth thoracic spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6332 ] ## Cross-references * EMAPA:25185 * FMA:6332 * NIF_GrossAnatomy:birnlex_2622 - * UMLS:C0501710 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2622] + * UMLS:C0501710 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2622 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0002955.md b/md/UBERON/55/UBERON_0002955.md index b32cc853a1..322adb9b46 100644 --- a/md/UBERON/55/UBERON_0002955.md +++ b/md/UBERON/55/UBERON_0002955.md @@ -6,14 +6,14 @@ ## Synonyms - * rhomboid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62154] - * rhomboid thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62154] - * Rh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_778[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus commissuralis rhomboidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002458] - * nucleus rhomboidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002458] - * nucleus rhomboidalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:310[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rhomboid nucleus (Cajal 1904) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:310] - * rhomboid nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:310] + * rhomboid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62154 ] + * rhomboid thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62154 ] + * Rh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_778, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus commissuralis rhomboidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002458 ] + * nucleus rhomboidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002458 ] + * nucleus rhomboidalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:310, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rhomboid nucleus (Cajal 1904) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:310 ] + * rhomboid nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:310 ] ## Cross-references @@ -23,8 +23,8 @@ * BTO:0002458 * FMA:62154 * NIF_GrossAnatomy:birnlex_778 - * NeuroNames:310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_778] - * UMLS:C0228326 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_778] + * NeuroNames:310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_778 ] + * UMLS:C0228326 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_778 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003055.md b/md/UBERON/55/UBERON_0003055.md index 7ba54b8fd4..485402d437 100644 --- a/md/UBERON/55/UBERON_0003055.md +++ b/md/UBERON/55/UBERON_0003055.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003055 * *Label* = periderm - * *Definition* = A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * *Definition* = A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] * *Comment* = Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html) ## Synonyms - * skin periderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001846] - * EVL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001185] + * skin periderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001846 ] + * EVL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001185 ] * epidermis epithelial layer * epidermis outer layer * periderm @@ -19,7 +19,7 @@ * EHDAA2:0001846 * EHDAA:6538 * TAO:0001185 - * UMLS:C1518973 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Periderm] + * UMLS:C1518973 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Periderm ] * VHOG:0001680 * XAO:0000029 * ZFA:0001185 @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: OBO_REL:part_of ectoderm (TAO:0000016) CHANGED TO: develops_from ectoderm (UBERON:0000924)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003155.md b/md/UBERON/55/UBERON_0003155.md index fd71abf7fc..475fe471fd 100644 --- a/md/UBERON/55/UBERON_0003155.md +++ b/md/UBERON/55/UBERON_0003155.md @@ -7,7 +7,7 @@ ## Synonyms - * occiput [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004492[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * occiput [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004492, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003255.md b/md/UBERON/55/UBERON_0003255.md index dc1785435d..70a32f4792 100644 --- a/md/UBERON/55/UBERON_0003255.md +++ b/md/UBERON/55/UBERON_0003255.md @@ -7,9 +7,9 @@ ## Synonyms - * developmental tissue ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ectoderm of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * developmental tissue ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ectoderm of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003255 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_0003355.md b/md/UBERON/55/UBERON_0003355.md index 0aec6f2fe1..bd2ff99d2e 100644 --- a/md/UBERON/55/UBERON_0003355.md +++ b/md/UBERON/55/UBERON_0003355.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003355 * *Label* = epithelium of incisor - * *Definition* = An epithelium that is part of a incisor tooth [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a incisor tooth [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of incisor tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * incisor tooth epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of incisor tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * incisor tooth epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [incisor tooth](../../UBERON/98/UBERON_0001098.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003455.md b/md/UBERON/55/UBERON_0003455.md index f523b6ae63..b52190152f 100644 --- a/md/UBERON/55/UBERON_0003455.md +++ b/md/UBERON/55/UBERON_0003455.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003455 * *Label* = inner renal medulla loop of henle - * *Definition* = A loop of Henle that is part of a inner medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A loop of Henle that is part of a inner medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Henle loop of inner medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Henle loop of inner renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Henle loop of inner zone of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Henle loop of inner zone of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * henle's loop of inner medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * henle's loop of inner renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * henle's loop of inner zone of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * henle's loop of inner zone of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner medulla of kidney Henle loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner medulla of kidney henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner medulla of kidney loop of Henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner renal medulla Henle loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner renal medulla henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner renal medulla loop of Henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of medulla of kidney Henle loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of medulla of kidney henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of medulla of kidney loop of Henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of renal medulla Henle loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of renal medulla henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of renal medulla loop of Henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney inner medulla loop of henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002623] - * loop of Henle of inner medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * loop of Henle of inner renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * loop of Henle of inner zone of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * loop of Henle of inner zone of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Henle loop of inner medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Henle loop of inner renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Henle loop of inner zone of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Henle loop of inner zone of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * henle's loop of inner medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * henle's loop of inner renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * henle's loop of inner zone of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * henle's loop of inner zone of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner medulla of kidney Henle loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner medulla of kidney henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner medulla of kidney loop of Henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner renal medulla Henle loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner renal medulla henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner renal medulla loop of Henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of medulla of kidney Henle loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of medulla of kidney henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of medulla of kidney loop of Henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of renal medulla Henle loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of renal medulla henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of renal medulla loop of Henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney inner medulla loop of henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002623 ] + * loop of Henle of inner medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * loop of Henle of inner renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * loop of Henle of inner zone of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * loop of Henle of inner zone of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [loop of Henle](../../UBERON/88/UBERON_0001288.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inner medulla of kidney](../../UBERON/94/UBERON_0001294.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003555.md b/md/UBERON/55/UBERON_0003555.md index 7fbcf8dcb4..0d8c3d84df 100644 --- a/md/UBERON/55/UBERON_0003555.md +++ b/md/UBERON/55/UBERON_0003555.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003555 * *Label* = spinal cord pia mater - * *Definition* = A pia mater that is part of a spinal cord [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pia mater that is part of a spinal cord [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pia mater of neuraxis of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pia mater of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord pia mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pia mater of neuraxis of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pia mater of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord pia mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EHDAA2:0001896 * EMAPA:17807 * MA:0001133 - * UMLS:C1710148 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord_Pia_Mater] + * UMLS:C1710148 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord_Pia_Mater ] * VHOG:0000468 * ncithesaurus:Spinal_Cord_Pia_Mater @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) and [pia mater](../../UBERON/61/UBERON_0002361.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The innermost of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003655.md b/md/UBERON/55/UBERON_0003655.md index a943f6bccd..817bb4e739 100644 --- a/md/UBERON/55/UBERON_0003655.md +++ b/md/UBERON/55/UBERON_0003655.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003655 * *Label* = molar tooth - * *Definition* = Molars are the rearmost and most complicated kind of tooth in most mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Molar_(tooth)] + * *Definition* = Molars are the rearmost and most complicated kind of tooth in most mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Molar_(tooth) ] * *Comment* = Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar. ## Synonyms - * dens molaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Molar_%28tooth%29] - * molaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001759] - * molar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000350] + * dens molaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Molar_%28tooth%29 ] + * molaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001759 ] + * molar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000350 ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0000350 * MESH:A14.254.860.525 * SCTID:362115002 - * UMLS:C0026367 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Molar_Tooth] + * UMLS:C0026367 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Molar_Tooth ] * Wikipedia:Molar_(tooth) * ncithesaurus:Molar_Tooth @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003855.md b/md/UBERON/55/UBERON_0003855.md index 60aab232b7..fc83d3e455 100644 --- a/md/UBERON/55/UBERON_0003855.md +++ b/md/UBERON/55/UBERON_0003855.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003855 * *Label* = gonad mesenchyme - * *Definition* = Mesenchyme that is part of a gonad [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a gonad [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gonada mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gonada mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gonad](../../UBERON/91/UBERON_0000991.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0003955.md b/md/UBERON/55/UBERON_0003955.md index 391d75240d..9163439aac 100644 --- a/md/UBERON/55/UBERON_0003955.md +++ b/md/UBERON/55/UBERON_0003955.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003955 * *Label* = molar crown - * *Definition* = the part of a molar that is covered by enamel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003932] + * *Definition* = the part of a molar that is covered by enamel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003932 ] ## Synonyms - * crown of molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85301] - * molar tooth crown [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85301] - * molar tooth tooth crown [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tooth crown of molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * crown of molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85301 ] + * molar tooth crown [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85301 ] + * molar tooth tooth crown [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tooth crown of molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [molar tooth](../../UBERON/55/UBERON_0003655.md) and [tooth crown](../../UBERON/75/UBERON_0003675.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004055.md b/md/UBERON/55/UBERON_0004055.md index e5c7a19b5a..1ec279bd2c 100644 --- a/md/UBERON/55/UBERON_0004055.md +++ b/md/UBERON/55/UBERON_0004055.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004055 * *Label* = primitive pit - * *Definition* = the small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009329[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_pit] + * *Definition* = the small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009329, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_pit ] * *Comment* = TODO - check ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0001521 * EHDAA:551 - * UMLS:C1514439 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primitive_Pit] + * UMLS:C1514439 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primitive_Pit ] * Wikipedia:Primitive_pit * ncithesaurus:Primitive_Pit @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The primitive pit is a depression in the center of the primitive node, connecting to the notochord. It consists of part of the primitive streak[Wikipedia:Primitive_pit]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004155.md b/md/UBERON/55/UBERON_0004155.md index 06ffb7c2da..9b68aa601d 100644 --- a/md/UBERON/55/UBERON_0004155.md +++ b/md/UBERON/55/UBERON_0004155.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004155 * *Label* = septum secundum - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003285[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_secondum] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003285, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_secondum ] * *Comment* = The septum secundum, semilunar in shape, grows downward from the upper wall of the atrium immediately to the right of the primary septum and ostium secundum. Shortly after birth it fuses with the septum primum, and consequently the foramen ovale is closed, but sometimes the fusion is incomplete and the upper part of the foramen remains patent. The limbus fossae ovalis denotes the free margin of the septum secundum. ## Synonyms - * interatrial septum secundum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001827] + * interatrial septum secundum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001827 ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:17864 * FMA:63910 * SCTID:308850005 - * UMLS:C0225838 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Septum_Secundum] + * UMLS:C0225838 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Septum_Secundum ] * VHOG:0000021 * Wikipedia:Septum_secondum * ncithesaurus:Septum_Secundum @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The second of the two membranous sheets which partially separate the two atria during embryonic development. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004255.md b/md/UBERON/55/UBERON_0004255.md index 50993ffd46..c9ca0c1634 100644 --- a/md/UBERON/55/UBERON_0004255.md +++ b/md/UBERON/55/UBERON_0004255.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004255 * *Label* = forelimb stylopod muscle - * *Definition* = A muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a forelimb stylopod (upper arm)[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: the FMA class "muscle of arm" belongs here, do not move. See notes on UBERON:0001460 for possible terminological confusion over term 'arm' ## Synonyms - * muscle of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000606] - * upper arm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000606] - * wing stylopod muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * muscle of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37370[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * skeletal muscle of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19107] + * muscle of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000606 ] + * upper arm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000606 ] + * wing stylopod muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * muscle of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37370, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * skeletal muscle of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19107 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004355.md b/md/UBERON/55/UBERON_0004355.md index fd1a004190..c7ce064fc3 100644 --- a/md/UBERON/55/UBERON_0004355.md +++ b/md/UBERON/55/UBERON_0004355.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004355 * *Label* = podocyte foot process - * *Definition* = the footlike extension of podocytes that interdigitate with one another to form the walls of the glomerular capillaries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008059] + * *Definition* = the footlike extension of podocytes that interdigitate with one another to form the walls of the glomerular capillaries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008059 ] * *Comment* = TODO - submit to GO ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004455.md b/md/UBERON/55/UBERON_0004455.md index a1943114f9..9a6f613ccc 100644 --- a/md/UBERON/55/UBERON_0004455.md +++ b/md/UBERON/55/UBERON_0004455.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004455 * *Label* = neurula embryo - * *Definition* = An embryo at the neurula stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * *Definition* = An embryo at the neurula stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] ## Synonyms - * neurula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001766] + * neurula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001766 ] ## Cross-references * BILA:0000061 * BTO:0001766 - * UMLS:C1518306 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neurula] + * UMLS:C1518306 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neurula ] * ncithesaurus:Neurula ## Subsets @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [neurula stage](../../UBERON/10/UBERON_0000110.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007013 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004655.md b/md/UBERON/55/UBERON_0004655.md index 8aac768fa0..1eef205311 100644 --- a/md/UBERON/55/UBERON_0004655.md +++ b/md/UBERON/55/UBERON_0004655.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004655 * *Label* = zygomatic process of temporal bone - * *Definition* = The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_process_of_temporal_bone] + * *Definition* = The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_process_of_temporal_bone ] ## Synonyms - * processus zygomaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52886] - * processus zygomaticus ossis temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_process_of_temporal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * temporal bone zygomatic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002811] - * temporal zygomatic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52886] + * processus zygomaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52886 ] + * processus zygomaticus ossis temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_process_of_temporal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * temporal bone zygomatic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002811 ] + * temporal zygomatic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52886 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004653 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0004755.md b/md/UBERON/55/UBERON_0004755.md index c39869ae86..7981d2aae3 100644 --- a/md/UBERON/55/UBERON_0004755.md +++ b/md/UBERON/55/UBERON_0004755.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004755 * *Label* = skeletal tissue - * *Definition* = A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000015[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000015, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005055.md b/md/UBERON/55/UBERON_0005055.md index 1882d2e388..8ce715693d 100644 --- a/md/UBERON/55/UBERON_0005055.md +++ b/md/UBERON/55/UBERON_0005055.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005055 * *Label* = zone of long bone - * *Definition* = An organ part that is part of a long bone [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ part that is part of a long bone [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [long bone](../../UBERON/95/UBERON_0002495.md) and [zone of bone organ](../../UBERON/13/UBERON_0005913.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005155.md b/md/UBERON/55/UBERON_0005155.md index bd0942c521..cd49efe3f8 100644 --- a/md/UBERON/55/UBERON_0005155.md +++ b/md/UBERON/55/UBERON_0005155.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005155 * *Label* = open tracheal system - * *Definition* = An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007424] + * *Definition* = An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007424 ] ## Synonyms * invertebrate tracheal system * open tracheal system - * tracheal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005024[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * tracheal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005024, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005255.md b/md/UBERON/55/UBERON_0005255.md index 0e2e6ce349..ec0d0994ee 100644 --- a/md/UBERON/55/UBERON_0005255.md +++ b/md/UBERON/55/UBERON_0005255.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005255 * *Label* = pedal digit mesenchyme - * *Definition* = Mesenchyme that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe mesenchyme - * foot digit mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * finger ray mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pedal digital ray mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * foot digit mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * finger ray mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pedal digital ray mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005355.md b/md/UBERON/55/UBERON_0005355.md index fd892d2e54..ccdf44a302 100644 --- a/md/UBERON/55/UBERON_0005355.md +++ b/md/UBERON/55/UBERON_0005355.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005355 * *Label* = malleus neck - * *Definition* = the narrow contracted section of the malleus located between the head and the manubrium[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010327[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_malleus] + * *Definition* = the narrow contracted section of the malleus located between the head and the manubrium[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010327, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_malleus ] ## Synonyms - * neck of malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52762] - * collum mallei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_malleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * neck of malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52762 ] + * collum mallei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_malleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * [neck of organ](../../UBERON/60/UBERON_0001560.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) ## Equivalencies @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005455.md b/md/UBERON/55/UBERON_0005455.md index 7ab3793998..03ecd00bf3 100644 --- a/md/UBERON/55/UBERON_0005455.md +++ b/md/UBERON/55/UBERON_0005455.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005455 * *Label* = interventricular groove - * *Definition* = Either of the anterior and posterior grooves on the surface of the heart that lie over the interventricular septum and join at the apex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/interventricular%20sulcus] + * *Definition* = Either of the anterior and posterior grooves on the surface of the heart that lie over the interventricular septum and join at the apex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/interventricular%20sulcus ] ## Synonyms - * interventricular sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7223] + * interventricular sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7223 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005655.md b/md/UBERON/55/UBERON_0005655.md index fa748039e3..2830574cda 100644 --- a/md/UBERON/55/UBERON_0005655.md +++ b/md/UBERON/55/UBERON_0005655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005655 * *Label* = right lung accessory lobe epithelium - * *Definition* = An epithelium that is part of a right lung accessory lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a right lung accessory lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0005855.md b/md/UBERON/55/UBERON_0005855.md index dd217e6e3e..c9ae305ac3 100644 --- a/md/UBERON/55/UBERON_0005855.md +++ b/md/UBERON/55/UBERON_0005855.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006255.md b/md/UBERON/55/UBERON_0006255.md index 696c51f552..1bdf065ec8 100644 --- a/md/UBERON/55/UBERON_0006255.md +++ b/md/UBERON/55/UBERON_0006255.md @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [ischial endochondral element](../../UBERON/56/UBERON_0015056.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006355.md b/md/UBERON/55/UBERON_0006355.md index efca5bdf42..6ab2c7cc27 100644 --- a/md/UBERON/55/UBERON_0006355.md +++ b/md/UBERON/55/UBERON_0006355.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006455.md b/md/UBERON/55/UBERON_0006455.md index 34e34dd1b5..4b82244f86 100644 --- a/md/UBERON/55/UBERON_0006455.md +++ b/md/UBERON/55/UBERON_0006455.md @@ -6,16 +6,16 @@ ## Synonyms - * T7 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1392] - * seventh thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1392] - * t7 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71173] + * T7 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1392 ] + * seventh thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1392 ] + * t7 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71173 ] ## Cross-references * FMA:71173 * NIF_GrossAnatomy:birnlex_1392 * SCTID:278769004 - * UMLS:C0457865 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1392] + * UMLS:C0457865 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1392 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006555.md b/md/UBERON/55/UBERON_0006555.md index 8027e6b3e4..0f621e04a5 100644 --- a/md/UBERON/55/UBERON_0006555.md +++ b/md/UBERON/55/UBERON_0006555.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006555 * *Label* = excretory tube - * *Definition* = A tube that is part of a excretory system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tube that is part of a excretory system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [renal system](../../UBERON/08/UBERON_0001008.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006655.md b/md/UBERON/55/UBERON_0006655.md index 170b4433f3..a3ca7fcd47 100644 --- a/md/UBERON/55/UBERON_0006655.md +++ b/md/UBERON/55/UBERON_0006655.md @@ -6,7 +6,7 @@ ## Synonyms - * Scrotal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20729] + * Scrotal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20729 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006755.md b/md/UBERON/55/UBERON_0006755.md index 9870a1ed88..aab2678ef5 100644 --- a/md/UBERON/55/UBERON_0006755.md +++ b/md/UBERON/55/UBERON_0006755.md @@ -15,7 +15,7 @@ * EHDAA:9127 * FMA:55559 * SCTID:245542009 - * UMLS:C0447650 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Parathyroid_Gland] + * UMLS:C0447650 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Parathyroid_Gland ] * ncithesaurus:Inferior_Parathyroid_Gland ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006855.md b/md/UBERON/55/UBERON_0006855.md index 1ceb29c7eb..10758cf8fe 100644 --- a/md/UBERON/55/UBERON_0006855.md +++ b/md/UBERON/55/UBERON_0006855.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006855 * *Label* = ureter muscle layer - * *Definition* = A muscle layer that is part of a ureter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a ureter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscular coat of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15893] - * muscular layer of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15893] - * muscularis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15893] - * tunica muscularis (ureter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica muscularis ureteris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ureteral smooth muscle layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28567] + * muscular coat of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15893 ] + * muscular layer of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15893 ] + * muscularis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15893 ] + * tunica muscularis (ureter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica muscularis ureteris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ureteral smooth muscle layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28567 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0006955.md b/md/UBERON/55/UBERON_0006955.md index 0edf14894c..2bc7a84d9f 100644 --- a/md/UBERON/55/UBERON_0006955.md +++ b/md/UBERON/55/UBERON_0006955.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006955 * *Label* = uterine epithelium - * *Definition* = An epithelium that is part of a uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * uterus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003082] + * uterus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003082 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0007155.md b/md/UBERON/55/UBERON_0007155.md index 0e79cf6d8a..57821176b5 100644 --- a/md/UBERON/55/UBERON_0007155.md +++ b/md/UBERON/55/UBERON_0007155.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007155 * *Label* = superior epigastric vein - * *Definition* = In human anatomy, superior epigastric vein refers to a blood vessel that carries deoxygenated blood and drains into the internal thoracic vein. It anastomoses with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_epigastric_vein] + * *Definition* = In human anatomy, superior epigastric vein refers to a blood vessel that carries deoxygenated blood and drains into the internal thoracic vein. It anastomoses with the inferior epigastric vein at the level of the umbilicus and drains the anterior part of the abdominal wall and some of the diaphragm. Along its course, it is accompanied by a similarly named artery, the superior epigastric artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_epigastric_vein ] ## Synonyms - * venae epigastricae superiores [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae epigastricae superiores [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0007255.md b/md/UBERON/55/UBERON_0007255.md index 951d6c37b2..f4407ba1e9 100644 --- a/md/UBERON/55/UBERON_0007255.md +++ b/md/UBERON/55/UBERON_0007255.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007255 * *Label* = intervertebral disk of lumbar vertebra - * *Definition* = An intervertebral disk that is part of a lumbar region of vertebral column. A lumbar intervertebral disk connects at least one lumbar vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intervertebral disk that is part of a lumbar region of vertebral column. A lumbar intervertebral disk connects at least one lumbar vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * intervertebral disc of lumbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19468] + * intervertebral disc of lumbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19468 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intervertebral disk](../../UBERON/66/UBERON_0001066.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lumbar region of vertebral column](../../UBERON/74/UBERON_0006074.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0007355.md b/md/UBERON/55/UBERON_0007355.md index 90b62cd995..ceb3ccd2fc 100644 --- a/md/UBERON/55/UBERON_0007355.md +++ b/md/UBERON/55/UBERON_0007355.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007355 * *Label* = bony part of pharyngotympanic tube - * *Definition* = The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bony_part_of_pharyngotympanic_tube] + * *Definition* = The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bony_part_of_pharyngotympanic_tube ] ## Synonyms - * bony part of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60057] - * bony part of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60057] - * osseous portion of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60057] - * pars ossea (tuba auditiva) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60057] - * pars ossea (tuba auditoria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60057] - * osseous portion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bony_part_of_pharyngotympanic_tube] - * pars ossea tubae auditivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bony_part_of_pharyngotympanic_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bony part of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60057 ] + * bony part of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60057 ] + * osseous portion of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60057 ] + * pars ossea (tuba auditiva) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60057 ] + * pars ossea (tuba auditoria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60057 ] + * osseous portion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bony_part_of_pharyngotympanic_tube ] + * pars ossea tubae auditivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bony_part_of_pharyngotympanic_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngotympanic tube](../../UBERON/93/UBERON_0002393.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0008255.md b/md/UBERON/55/UBERON_0008255.md index 6aa48abc95..0c72637bad 100644 --- a/md/UBERON/55/UBERON_0008255.md +++ b/md/UBERON/55/UBERON_0008255.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008255 * *Label* = right clavicle - * *Definition* = A clavicle that is in the right side of a entire appendicular skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A clavicle that is in the right side of a entire appendicular skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [clavicle](../../UBERON/05/UBERON_0001105.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [appendicular skeleton](../../UBERON/91/UBERON_0002091.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0008455.md b/md/UBERON/55/UBERON_0008455.md index 12d0c69367..0af9a84f8e 100644 --- a/md/UBERON/55/UBERON_0008455.md +++ b/md/UBERON/55/UBERON_0008455.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008455 * *Label* = rectus capitis posterior minor - * *Definition* = The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] + * *Definition* = The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] ## Synonyms - * lesser posterior rectus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32526] - * rectus capitis posterior minor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] - * musculus rectus capitis posterior minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recti capitis posteriores minores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] - * rectus capitis posterior minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] - * rectus capitus posterior minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] - * rectus capitus posterior minor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] - * rectus posterior minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_capitis_posterior_minor_muscle] + * lesser posterior rectus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32526 ] + * rectus capitis posterior minor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] + * musculus rectus capitis posterior minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recti capitis posteriores minores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] + * rectus capitis posterior minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] + * rectus capitus posterior minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] + * rectus capitus posterior minor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] + * rectus posterior minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_capitis_posterior_minor_muscle ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0008855.md b/md/UBERON/55/UBERON_0008855.md index 13b7073925..8c7840868f 100644 --- a/md/UBERON/55/UBERON_0008855.md +++ b/md/UBERON/55/UBERON_0008855.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008855 * *Label* = placenta metrial gland - * *Definition* = group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010777] + * *Definition* = group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010777 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0008955.md b/md/UBERON/55/UBERON_0008955.md index 73f08c816f..09bbe2a06d 100644 --- a/md/UBERON/55/UBERON_0008955.md +++ b/md/UBERON/55/UBERON_0008955.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008955 * *Label* = middle lobe of lung - * *Definition* = A lobe of the lung that is situated somewhere between an upper lobe and lower lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A lobe of the lung that is situated somewhere between an upper lobe and lower lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: mice have 4 right lobes (5 in some schemes), humans have 2, and thus no middle lobe (the lingula is not a lobe) ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009055.md b/md/UBERON/55/UBERON_0009055.md index ad40f5f00f..234a920e04 100644 --- a/md/UBERON/55/UBERON_0009055.md +++ b/md/UBERON/55/UBERON_0009055.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009555.md b/md/UBERON/55/UBERON_0009555.md index 908c4725cc..d312afd852 100644 --- a/md/UBERON/55/UBERON_0009555.md +++ b/md/UBERON/55/UBERON_0009555.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009555 * *Label* = short pastern bone - * *Definition* = The middle phalanx of digit 3 in a horse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pastern] + * *Definition* = The middle phalanx of digit 3 in a horse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pastern ] * *Comment* = In future this may be merged into a species-neutral phalanx 2 digit III ## Synonyms - * equine middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine phalanx 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine phalanx 2 of digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * equine middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine phalanx 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine phalanx 2 of digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009655.md b/md/UBERON/55/UBERON_0009655.md index bc72ccc789..f58cbf67ca 100644 --- a/md/UBERON/55/UBERON_0009655.md +++ b/md/UBERON/55/UBERON_0009655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009655 * *Label* = auricular artery - * *Definition* = An artery that supplies oxygenated blood to the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Auricular_Artery] + * *Definition* = An artery that supplies oxygenated blood to the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Auricular_Artery ] * *Comment* = add child terms ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0001918 - * UMLS:C1706858 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auricular_Artery] + * UMLS:C1706858 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auricular_Artery ] * ncithesaurus:Auricular_Artery ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [ear](../../UBERON/90/UBERON_0001690.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009755.md b/md/UBERON/55/UBERON_0009755.md index f7bcde4c11..182fbea6fc 100644 --- a/md/UBERON/55/UBERON_0009755.md +++ b/md/UBERON/55/UBERON_0009755.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009755 * *Label* = spermaceti - * *Definition* = wax present in the head cavities of the sperm whale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spermaceti] + * *Definition* = wax present in the head cavities of the sperm whale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spermaceti ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009855.md b/md/UBERON/55/UBERON_0009855.md index 3d10cc268f..0af2a41726 100644 --- a/md/UBERON/55/UBERON_0009855.md +++ b/md/UBERON/55/UBERON_0009855.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009855 * *Label* = echinoderm gastric caecum - * *Definition* = non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:20955602] + * *Definition* = non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:20955602 ] * *Comment* = The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0009955.md b/md/UBERON/55/UBERON_0009955.md index eb52455371..832f22d410 100644 --- a/md/UBERON/55/UBERON_0009955.md +++ b/md/UBERON/55/UBERON_0009955.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009955 * *Label* = neurogenic placode - * *Definition* = Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523831[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurogenic_placodes[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001309] + * *Definition* = Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523831, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurogenic_placodes, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001309 ] * *Comment* = Includes: trigeminal, otic, lateral line and epibranchial placodes. Taxon notes: While some sensory placodes (otic and olfactory) may have homologues in basal chordates (Wada et al., 1998), the so-called neurogenenic placodes (trigeminal, otic, lateral line and epibranchial placodes) appear to have emerged at a later time (Shimeld and Holland, 2000)[NBK53171] ## Synonyms - * neurogenic placodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001309[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * placodae neurogenicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurogenic_placodes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * neurogenic placodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001309, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * placodae neurogenicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurogenic_placodes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010055.md b/md/UBERON/55/UBERON_0010055.md index 96430e90ba..42b13ba841 100644 --- a/md/UBERON/55/UBERON_0010055.md +++ b/md/UBERON/55/UBERON_0010055.md @@ -17,9 +17,7 @@ ## Superclasses - * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) - * [mesenchyme derived from head neural crest](../../UBERON/13/UBERON_0007213.md) - * [associated mesenchyme of middle ear](../../UBERON/06/UBERON_0009506.md) + * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) * [hyomandibular cartilage](../../UBERON/07/UBERON_0011607.md) * [stapes endochondral element](../../UBERON/16/UBERON_0015016.md) * [part_of](../../BFO/50/BFO_0000050.md) some [auditory ossicle](../../UBERON/86/UBERON_0001686.md) @@ -28,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [stapes endochondral element](../../UBERON/16/UBERON_0015016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010155.md b/md/UBERON/55/UBERON_0010155.md index 44887c6071..ca081ae827 100644 --- a/md/UBERON/55/UBERON_0010155.md +++ b/md/UBERON/55/UBERON_0010155.md @@ -8,7 +8,7 @@ ## Synonyms * parieto-mastoid suture of skull - * parietomastoid suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52947] + * parietomastoid suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52947 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010255.md b/md/UBERON/55/UBERON_0010255.md index 2bb015c874..68860d746c 100644 --- a/md/UBERON/55/UBERON_0010255.md +++ b/md/UBERON/55/UBERON_0010255.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010255 * *Label* = 3rd arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 3rd arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd pharyngeal arch mesenchyme derived from neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000571] - * mesenchyme derived from neural crest of mesenchyme of 3rd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16404] + * 3rd pharyngeal arch mesenchyme derived from neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000571 ] + * mesenchyme derived from neural crest of mesenchyme of 3rd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16404 ] * neural crest derived arch 3 mesenchyme * pharyngeal arch 3 mesenchyme from neural crest * branchial arch 3 mesenchyme from neural crest @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [3rd arch mesenchyme](../../UBERON/90/UBERON_0005690.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010355.md b/md/UBERON/55/UBERON_0010355.md index b31bc77ec8..c5fa59a339 100644 --- a/md/UBERON/55/UBERON_0010355.md +++ b/md/UBERON/55/UBERON_0010355.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010355 * *Label* = ossification center - * *Definition* = The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_center] + * *Definition* = The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_center ] * *Comment* = Editors note: currently classified as a zone of a bone organ, but exists prior to bone ossifying ## Synonyms - * centrum ossificationis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ossification centre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75436] - * center of ossification [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_center] - * centrum ossificationis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_center[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * centrum ossificationis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ossification centre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75436 ] + * center of ossification [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_center ] + * centrum ossificationis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_center, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010755.md b/md/UBERON/55/UBERON_0010755.md index 68ba77cb08..1fe43d7823 100644 --- a/md/UBERON/55/UBERON_0010755.md +++ b/md/UBERON/55/UBERON_0010755.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010755 * *Label* = secondary follicle corona - * *Definition* = The part of the secondary follicle that surrounds the germinal center. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The part of the secondary follicle that surrounds the germinal center. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor's note: consider making terminology consistent amongst subclasses - see http://purl.obolibrary.org/obo/uberon/tracker/7 ## Synonyms - * dark zone of follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * inactive zone of follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] - * peripheral zone of follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * dark zone of follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * inactive zone of follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] + * peripheral zone of follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] * B cell corona * mantle zone ## Cross-references - * UMLS:C1512987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mantle_Zone] + * UMLS:C1512987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mantle_Zone ] * ncithesaurus:Mantle_Zone ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [lymphoid tissue](../../UBERON/44/UBERON_0001744.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary nodular lymphoid tissue](../../UBERON/45/UBERON_0001745.md) and [surrounds](../../RO/21/RO_0002221.md) some [germinal center](../../UBERON/54/UBERON_0010754.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010855.md b/md/UBERON/55/UBERON_0010855.md index 0afcdf229e..7b57ed234c 100644 --- a/md/UBERON/55/UBERON_0010855.md +++ b/md/UBERON/55/UBERON_0010855.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010855 * *Label* = skin of forelimb wing - * *Definition* = A zone of skin that is part of a forelimb wing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a forelimb wing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb wing](../../UBERON/24/UBERON_0000024.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0010955.md b/md/UBERON/55/UBERON_0010955.md index 15de4f0907..73fb7e4d7e 100644 --- a/md/UBERON/55/UBERON_0010955.md +++ b/md/UBERON/55/UBERON_0010955.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0011155.md b/md/UBERON/55/UBERON_0011155.md index f87396c145..333ad41c1b 100644 --- a/md/UBERON/55/UBERON_0011155.md +++ b/md/UBERON/55/UBERON_0011155.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011155 * *Label* = sylvian cistern - * *Definition* = The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?Sylvian+cistern] + * *Definition* = The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?Sylvian+cistern ] ## Synonyms ## Cross-references - * UMLS:C1515104 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sylvian_Cistern] + * UMLS:C1515104 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sylvian_Cistern ] * ncithesaurus:Sylvian_Cistern ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0011255.md b/md/UBERON/55/UBERON_0011255.md index 04dc9c8363..d7e7b09e2b 100644 --- a/md/UBERON/55/UBERON_0011255.md +++ b/md/UBERON/55/UBERON_0011255.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011255 * *Label* = Eimer's organ - * *Definition* = sensory organs in which the epidermis is modified to form bulbous papillae. present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eimer's_organ] + * *Definition* = sensory organs in which the epidermis is modified to form bulbous papillae. present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eimer's_organ ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0011655.md b/md/UBERON/55/UBERON_0011655.md index 12bb034150..2edabef8d8 100644 --- a/md/UBERON/55/UBERON_0011655.md +++ b/md/UBERON/55/UBERON_0011655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011655 * *Label* = interclavicle - * *Definition* = Dermal bone of pectoral girdle that is median and ventral in position. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000161[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Dermal bone of pectoral girdle that is median and ventral in position. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000161, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = See discussion on pectoral girdles - change relationship to overlaps? Kardong: enlarged oval scale. // Present in therapids and monotremes, reduced in size in marsupials and placentals. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0011755.md b/md/UBERON/55/UBERON_0011755.md index 605fde115e..18fcda0019 100644 --- a/md/UBERON/55/UBERON_0011755.md +++ b/md/UBERON/55/UBERON_0011755.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011755 * *Label* = female labial swelling - * *Definition* = A genital swelling that is part of a female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A genital swelling that is part of a female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * labioscrotal swelling of female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30423] - * labial swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18329] + * labioscrotal swelling of female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30423 ] + * labial swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18329 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [genital swelling](../../UBERON/54/UBERON_0011754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0011955.md b/md/UBERON/55/UBERON_0011955.md index 454edcd7d6..c34e1a6a98 100644 --- a/md/UBERON/55/UBERON_0011955.md +++ b/md/UBERON/55/UBERON_0011955.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011955 * *Label* = left hepatic vein - * *Definition* = A hepatic vein that is part of a left lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic vein that is part of a left lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic vein](../../UBERON/43/UBERON_0001143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lobe of liver](../../UBERON/15/UBERON_0001115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011955 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0012055.md b/md/UBERON/55/UBERON_0012055.md index 404e2826e4..765a1377cf 100644 --- a/md/UBERON/55/UBERON_0012055.md +++ b/md/UBERON/55/UBERON_0012055.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012055 * *Label* = left lung lower lobe bronchiole - * *Definition* = A bronchiole that is part of a lower lobe of left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a lower lobe of left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Mouse has single left lobe ## Synonyms * bronchiole of left lower lobe * bronchiole of left lower lobe of lung - * left lung caudal lobe bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000947] + * left lung caudal lobe bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000947 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of left lung](../../UBERON/53/UBERON_0008953.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0012255.md b/md/UBERON/55/UBERON_0012255.md index d97551d0ce..b3f0f229ac 100644 --- a/md/UBERON/55/UBERON_0012255.md +++ b/md/UBERON/55/UBERON_0012255.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012255 * *Label* = inferior phrenic artery - * *Definition* = The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_phrenic_arteries] + * *Definition* = The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_phrenic_arteries ] ## Synonyms - * arteriae phrenicae inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_phrenic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior phrenic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_phrenic_arteries] + * arteriae phrenicae inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_phrenic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior phrenic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_phrenic_arteries ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012255 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0012355.md b/md/UBERON/55/UBERON_0012355.md index 841c8a6001..5eeb1e6de9 100644 --- a/md/UBERON/55/UBERON_0012355.md +++ b/md/UBERON/55/UBERON_0012355.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012355 * *Label* = manual acropodium region - * *Definition* = The segment of the manus that consists of the manual digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The segment of the manus that consists of the manual digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note this class refers to an entire limb segment, not just the bones ## Synonyms @@ -14,14 +14,14 @@ * all fingers * anterior acropodium region * anterior acropodium segment of limb - * digiti manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * digits of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75592] - * fingers including thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75592] - * fingers set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75592] + * digiti manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * digits of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75592 ] + * fingers including thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75592 ] + * fingers set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75592 ] * manual acropodium region * manual acropodium segment of limb - * set of digits of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75592] - * set of fingers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75592] + * set of digits of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75592 ] + * set of fingers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75592 ] * anterior acropodium * manual acropodium @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acropodium region](../../UBERON/54/UBERON_0012354.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012355 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0013155.md b/md/UBERON/55/UBERON_0013155.md index 4e35f56a91..9b4fdf5bd9 100644 --- a/md/UBERON/55/UBERON_0013155.md +++ b/md/UBERON/55/UBERON_0013155.md @@ -6,7 +6,7 @@ ## Synonyms - * ectoderm of mandibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16383] + * ectoderm of mandibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16383 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013155 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0013455.md b/md/UBERON/55/UBERON_0013455.md index 18c4953c53..bcd9929138 100644 --- a/md/UBERON/55/UBERON_0013455.md +++ b/md/UBERON/55/UBERON_0013455.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013455 * *Label* = spheno-petrosal fissure - * *Definition* = The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenopetrosal_fissure] + * *Definition* = The sphenopetrosal fissure (or sphenopetrosal suture) is the cranial suture between the sphenoid bone and the petrous portion of the temporal bone. It is in the middle cranial fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenopetrosal_fissure ] ## Synonyms - * fissura sphenopetrosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * sphenopetrosal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75038] + * fissura sphenopetrosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * sphenopetrosal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75038 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0013655.md b/md/UBERON/55/UBERON_0013655.md index a955a9a027..a3fdf78770 100644 --- a/md/UBERON/55/UBERON_0013655.md +++ b/md/UBERON/55/UBERON_0013655.md @@ -6,9 +6,9 @@ ## Synonyms - * elastica externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0001020] + * elastica externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0001020 ] * membrana elastica externa - * notochordal sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0001020] + * notochordal sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0001020 ] ## Cross-references @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Notochordal membrane covering derived from notochordal epithelium. Its first indication is at NF stage 24, and it is a distinct membrane by NF stage 28[XAO:0001020]. * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The notochordal sheath in amphioxus has a complex three-layered organization with the outer, middle and inner layer The outer and middle layer are composed of collagen fibers of different thickness and course, that correspond to collagen type I and collagen type III in vertebrates, respectively, and the inner layer is amorphous, resembles basal lamina, and is closely attached to the notochord by hemidesmosome junctions. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013655 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0013755.md b/md/UBERON/55/UBERON_0013755.md index 0225ca2584..34c8cdd16b 100644 --- a/md/UBERON/55/UBERON_0013755.md +++ b/md/UBERON/55/UBERON_0013755.md @@ -6,9 +6,9 @@ ## Synonyms - * arterial blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83066] - * blood in artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83066] - * portion of arterial blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83066] + * arterial blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83066 ] + * blood in artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83066 ] + * portion of arterial blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83066 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood](../../UBERON/78/UBERON_0000178.md) and [part_of](../../BFO/50/BFO_0000050.md) some [artery](../../UBERON/37/UBERON_0001637.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0014455.md b/md/UBERON/55/UBERON_0014455.md index 490f39e344..b3ff3be28a 100644 --- a/md/UBERON/55/UBERON_0014455.md +++ b/md/UBERON/55/UBERON_0014455.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014455 * *Label* = subcutaneous abdominal adipose tissue - * *Definition* = Subcutaneous adipose tissue that is located in the abdominal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:paula[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/259] + * *Definition* = Subcutaneous adipose tissue that is located in the abdominal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:paula, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/259 ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypodermis](../../UBERON/72/UBERON_0002072.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014455 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0014555.md b/md/UBERON/55/UBERON_0014555.md index 3a1bc07ab0..38f330725c 100644 --- a/md/UBERON/55/UBERON_0014555.md +++ b/md/UBERON/55/UBERON_0014555.md @@ -6,8 +6,8 @@ ## Synonyms - * CA2 part of stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4120[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA2 stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4120] + * CA2 part of stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4120, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA2 stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4120 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum radiatum](../../UBERON/72/UBERON_0005372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014555 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0014755.md b/md/UBERON/55/UBERON_0014755.md index a6209d63e7..adfa341e12 100644 --- a/md/UBERON/55/UBERON_0014755.md +++ b/md/UBERON/55/UBERON_0014755.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014755 * *Label* = P5 area of pallium (Myxiniformes) - * *Definition* = Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014755 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0014855.md b/md/UBERON/55/UBERON_0014855.md index 00480beea6..8ad93f8eb4 100644 --- a/md/UBERON/55/UBERON_0014855.md +++ b/md/UBERON/55/UBERON_0014855.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014855 * *Label* = posterior leaflet of mitral valve - * *Definition* = Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] + * *Definition* = Leaflet of mitral valve which is attached to the posterior head of the lateral papillary muscle of left ventricle through the chorda tendinea of the left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] ## Synonyms - * mural leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] - * posterior cusp of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] - * posterior mitral leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] - * posterolateral leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] - * smaller leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] - * ventricular leaflet of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7243] + * mural leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] + * posterior cusp of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] + * posterior mitral leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] + * posterolateral leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] + * smaller leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] + * ventricular leaflet of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7243 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014855 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_0015055.md b/md/UBERON/55/UBERON_0015055.md index 3f081dee51..635580bcb6 100644 --- a/md/UBERON/55/UBERON_0015055.md +++ b/md/UBERON/55/UBERON_0015055.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015055 * *Label* = pubic endochondral element - * *Definition* = A pubic bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A pubic bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * pubic element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * pubic skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * pubic element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * pubic skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [pubic cartilage element](../../UBERON/18/UBERON_0010718.md)or[pubic pre-cartilage condensation](../../UBERON/85/UBERON_0006285.md)or[pubis](../../UBERON/75/UBERON_0001275.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015055 + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2000455.md b/md/UBERON/55/UBERON_2000455.md index 6426245737..db5480be7e 100644 --- a/md/UBERON/55/UBERON_2000455.md +++ b/md/UBERON/55/UBERON_2000455.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2000555.md b/md/UBERON/55/UBERON_2000555.md index 82699e9386..a0bfa98841 100644 --- a/md/UBERON/55/UBERON_2000555.md +++ b/md/UBERON/55/UBERON_2000555.md @@ -6,9 +6,9 @@ ## Synonyms - * gill cover [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000555] - * opercular apparatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000555] - * operculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000555] + * gill cover [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000555 ] + * opercular apparatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000555 ] + * operculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000555 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2000655.md b/md/UBERON/55/UBERON_2000655.md index a1e68401e3..7d5ad3f364 100644 --- a/md/UBERON/55/UBERON_2000655.md +++ b/md/UBERON/55/UBERON_2000655.md @@ -28,8 +28,10 @@ Not clear that directional labels for optic tract parts are consistent across ta ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_2000755.md b/md/UBERON/55/UBERON_2000755.md index 8447d0888b..0e6f8b6f5c 100644 --- a/md/UBERON/55/UBERON_2000755.md +++ b/md/UBERON/55/UBERON_2000755.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 21 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 21 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_2000855.md b/md/UBERON/55/UBERON_2000855.md index c4ac9d941a..cee047ea6d 100644 --- a/md/UBERON/55/UBERON_2000855.md +++ b/md/UBERON/55/UBERON_2000855.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000855 * *Label* = somite 24 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 24 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2000955.md b/md/UBERON/55/UBERON_2000955.md index 75922f2052..2091f5f0b7 100644 --- a/md/UBERON/55/UBERON_2000955.md +++ b/md/UBERON/55/UBERON_2000955.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000955 * *Label* = sclerotome somite 18 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. immel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. immel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2001055.md b/md/UBERON/55/UBERON_2001055.md index e336a7e29c..b3911b3845 100644 --- a/md/UBERON/55/UBERON_2001055.md +++ b/md/UBERON/55/UBERON_2001055.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2001655.md b/md/UBERON/55/UBERON_2001655.md index c121e6025b..a1741c62fc 100644 --- a/md/UBERON/55/UBERON_2001655.md +++ b/md/UBERON/55/UBERON_2001655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001655 * *Label* = upper pharyngeal 4 tooth - * *Definition* = Tooth that is attached to the upper pharyngeal 4 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the upper pharyngeal 4 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2001755.md b/md/UBERON/55/UBERON_2001755.md index dee893a134..74db02017b 100644 --- a/md/UBERON/55/UBERON_2001755.md +++ b/md/UBERON/55/UBERON_2001755.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2001855.md b/md/UBERON/55/UBERON_2001855.md index e44d11465f..cb9af15fdf 100644 --- a/md/UBERON/55/UBERON_2001855.md +++ b/md/UBERON/55/UBERON_2001855.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001855 * *Label* = hyomandibular condyle for the opercle - * *Definition* = Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * opercular process of hyomandibular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001855] + * opercular process of hyomandibular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001855 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2001955.md b/md/UBERON/55/UBERON_2001955.md index 2e329d514d..a8d483782c 100644 --- a/md/UBERON/55/UBERON_2001955.md +++ b/md/UBERON/55/UBERON_2001955.md @@ -6,7 +6,7 @@ ## Synonyms - * body pigmentation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001955] + * body pigmentation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001955 ] ## Cross-references @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_2002055.md b/md/UBERON/55/UBERON_2002055.md index 88dfa56f75..4fa01494d3 100644 --- a/md/UBERON/55/UBERON_2002055.md +++ b/md/UBERON/55/UBERON_2002055.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002055 * *Label* = vertebra 6 - vertebra 7 joint - * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [vertebral element 6](../../UBERON/80/UBERON_2001980.md) and [core#connects](../../ts/core#connects.md) some [vertebral element 7](../../UBERON/81/UBERON_2001981.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2002255.md b/md/UBERON/55/UBERON_2002255.md index 0325c87c58..8ec381bf91 100644 --- a/md/UBERON/55/UBERON_2002255.md +++ b/md/UBERON/55/UBERON_2002255.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002255 * *Label* = ocular side - * *Definition* = Organism subdivision that is the side of the body possessing eyes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Organism subdivision that is the side of the body possessing eyes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * eyed side [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002255] + * eyed side [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002255 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2005055.md b/md/UBERON/55/UBERON_2005055.md index 4cb278effb..e78180875a 100644 --- a/md/UBERON/55/UBERON_2005055.md +++ b/md/UBERON/55/UBERON_2005055.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005055 * *Label* = median palatocerebral vein - * *Definition* = Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * MPLV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005055] + * MPLV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005055 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2005255.md b/md/UBERON/55/UBERON_2005255.md index dc32f3adf5..04ba50ec93 100644 --- a/md/UBERON/55/UBERON_2005255.md +++ b/md/UBERON/55/UBERON_2005255.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_2007055.md b/md/UBERON/55/UBERON_2007055.md index 094c6b8c92..cfb9a40ef0 100644 --- a/md/UBERON/55/UBERON_2007055.md +++ b/md/UBERON/55/UBERON_2007055.md @@ -6,10 +6,10 @@ ## Synonyms - * lateral hub of the semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007055] - * ventral bar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007055] - * ventral pillar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007055] - * ventral piller of the semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007055] + * lateral hub of the semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007055 ] + * ventral bar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007055 ] + * ventral pillar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007055 ] + * ventral piller of the semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007055 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3000155.md b/md/UBERON/55/UBERON_3000155.md index 193724ddc6..6c24810e86 100644 --- a/md/UBERON/55/UBERON_3000155.md +++ b/md/UBERON/55/UBERON_3000155.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000155 * *Label* = extremitas anterior - * *Definition* = Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * anterior ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000155] + * anterior ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000155 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3000255.md b/md/UBERON/55/UBERON_3000255.md index 0335922caf..f5475623f6 100644 --- a/md/UBERON/55/UBERON_3000255.md +++ b/md/UBERON/55/UBERON_3000255.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3000655.md b/md/UBERON/55/UBERON_3000655.md index b3e0d69fd6..d78cce37db 100644 --- a/md/UBERON/55/UBERON_3000655.md +++ b/md/UBERON/55/UBERON_3000655.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000655 * *Label* = processus dorsalis of lamella alaris - * *Definition* = Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3000755.md b/md/UBERON/55/UBERON_3000755.md index 2853dbc698..e90fd606d6 100644 --- a/md/UBERON/55/UBERON_3000755.md +++ b/md/UBERON/55/UBERON_3000755.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3000955.md b/md/UBERON/55/UBERON_3000955.md index 4057d7a889..3c0abb7582 100644 --- a/md/UBERON/55/UBERON_3000955.md +++ b/md/UBERON/55/UBERON_3000955.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000955 * *Label* = ceratobranchial I - * *Definition* = Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms - * epibranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000955] + * epibranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000955 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3010455.md b/md/UBERON/55/UBERON_3010455.md index 786d7968a9..dfd4649837 100644 --- a/md/UBERON/55/UBERON_3010455.md +++ b/md/UBERON/55/UBERON_3010455.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_3010555.md b/md/UBERON/55/UBERON_3010555.md index eb16d78cf7..0c0f31fa53 100644 --- a/md/UBERON/55/UBERON_3010555.md +++ b/md/UBERON/55/UBERON_3010555.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010555 * *Label* = obsolete endodermal cell - * *Definition* = A cell of the inner of the three germ layers of the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A cell of the inner of the three germ layers of the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * endoderm cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010555] + * endoderm cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010555 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000223 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/55/UBERON_4000055.md b/md/UBERON/55/UBERON_4000055.md index aed8b2aad4..e6d7699128 100644 --- a/md/UBERON/55/UBERON_4000055.md +++ b/md/UBERON/55/UBERON_4000055.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000055 * *Label* = polypteroid scale - * *Definition* = Multi-tissue structure composed of ganoine, dentine, elasmodine and cellular bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Multi-tissue structure composed of ganoine, dentine, elasmodine and cellular bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * polypterid scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * polypterid scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_4200055.md b/md/UBERON/55/UBERON_4200055.md index af465802c2..480654bc21 100644 --- a/md/UBERON/55/UBERON_4200055.md +++ b/md/UBERON/55/UBERON_4200055.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/55/UBERON_4200155.md b/md/UBERON/55/UBERON_4200155.md index 76916c7d2b..c6775d315d 100644 --- a/md/UBERON/55/UBERON_4200155.md +++ b/md/UBERON/55/UBERON_4200155.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0000056.md b/md/UBERON/56/UBERON_0000056.md index 112d002734..1447cfd21e 100644 --- a/md/UBERON/56/UBERON_0000056.md +++ b/md/UBERON/56/UBERON_0000056.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000056 * *Label* = ureter - * *Definition* = Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: the right and the left ureters. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9704[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0090189[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ureter] + * *Definition* = Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: the right and the left ureters. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9704, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0090189, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ureter ] ## Synonyms - * metanephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000605] + * metanephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000605 ] ## Cross-references @@ -27,7 +27,7 @@ * MIAA:0000120 * OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA * SCTID:302511008 - * UMLS:C0041951 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ureter] + * UMLS:C0041951 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ureter ] * VHOG:0000605 * Wikipedia:Ureter * XAO:0000144 @@ -70,8 +70,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ureteral * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ureteric * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0000156.md b/md/UBERON/56/UBERON_0000156.md index 7ac33fe307..342736b250 100644 --- a/md/UBERON/56/UBERON_0000156.md +++ b/md/UBERON/56/UBERON_0000156.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000156 * *Label* = theca externa - * *Definition* = The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Theca_externa] + * *Definition* = The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Theca_externa ] ## Synonyms - * ovary theca externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001713] - * theca externa (folliculus ovaricus tertiarius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18657] - * tunica externa of theca folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18657] - * external coat of theca folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002852] - * tunica externa thecae folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002852] - * tunica externa thecae folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Theca_externa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ovary theca externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001713 ] + * theca externa (folliculus ovaricus tertiarius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18657 ] + * tunica externa of theca folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18657 ] + * external coat of theca folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002852 ] + * tunica externa thecae folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002852 ] + * tunica externa thecae folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Theca_externa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005182 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0000456.md b/md/UBERON/56/UBERON_0000456.md index dd7ac12b62..15076eee99 100644 --- a/md/UBERON/56/UBERON_0000456.md +++ b/md/UBERON/56/UBERON_0000456.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000456 * *Label* = bodily secretion - * *Definition* = Body substance in a liquid or semisolid state produced by an exocrine gland. Example: saliva, sebum, blood, plasma, semen, urine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9675] + * *Definition* = Body substance in a liquid or semisolid state produced by an exocrine gland. Example: saliva, sebum, blood, plasma, semen, urine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9675 ] * *Comment* = AO notes: BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions ## Synonyms - * exocrine gland fluid/secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002504] + * exocrine gland fluid/secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002504 ] * secreted substance * exocrine gland fluid * exocrine gland fluid or secretion * exocrine gland secretion - * external secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002977] - * secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9675] + * external secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002977 ] + * secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9675 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:9675 * MA:0002504 * MESH:A12.200 - * UMLS:C1516992 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Exocrine_Gland_Fluid_or_Secretion] + * UMLS:C1516992 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Exocrine_Gland_Fluid_or_Secretion ] * galen:Secretion * ncithesaurus:Exocrine_Gland_Fluid_or_Secretion @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [portion of organism substance](../../UBERON/63/UBERON_0000463.md) and [produced_by](../../RO/01/RO_0003001.md) some [exocrine gland](../../UBERON/65/UBERON_0002365.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006540 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0000956.md b/md/UBERON/56/UBERON_0000956.md index d6724fa472..9b27bda9c4 100644 --- a/md/UBERON/56/UBERON_0000956.md +++ b/md/UBERON/56/UBERON_0000956.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000956 * *Label* = cerebral cortex - * *Definition* = The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1494] + * *Definition* = The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1494 ] ## Synonyms - * cortex of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000233[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61830] - * brain cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000233] - * central canal, spinal cord/medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:C] - * cortex cerebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:39[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortex cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortical plate (CTXpl) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:39] - * cortical plate (areas) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:39] - * pallium of the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000233] + * cortex of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000233, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61830 ] + * brain cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000233 ] + * central canal, spinal cord/medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:C ] + * cortex cerebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:39, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortex cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortical plate (CTXpl) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:39 ] + * cortical plate (areas) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:39 ] + * pallium of the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000233 ] ## Cross-references @@ -38,10 +38,10 @@ * MESH:A08.186.211.730.885.213 * MIAA:0000108 * NIF_GrossAnatomy:birnlex_1494 - * NeuroNames:39 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1494] + * NeuroNames:39 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1494 ] * SCTID:362880003 - * UMLS:C0007776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1494] - * UMLS:C0007776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cortex] + * UMLS:C0007776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1494 ] + * UMLS:C0007776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cortex ] * VHOG:0000722 * Wikipedia:Cerebral_cortex * http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg @@ -73,8 +73,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 24 mm (0.080.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted][Wikipedia:Cerebral_cortex]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Migration of neurons from the basal or striatal portions of the anterior part of the neural tube occurs to varying degrees in different vertebrate classes, but a true cerebral cortex is generally acknowledged to have made its first appearance in reptiles. The definition can be unambiguous, since 'cortex' simply implies the existence of a surface neuronal layer with an overlying 'zonal lamina' or 'molecular' layer containing dendrites and axons, which is separated from the underlying basal 'matrix' by white matter. Although reptilian cerebral cortex does indeed fulfill these conditions in certain locations, the separation from striatal structures is often indistinct, so that it may even be argued that some primitive dipnoans possess a pallium or cortex. Nevertheless, an extensive laminated layer separated by underlying white matter is well represented only in reptiles and mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001056.md b/md/UBERON/56/UBERON_0001056.md index d560bfd4e2..b5493fc741 100644 --- a/md/UBERON/56/UBERON_0001056.md +++ b/md/UBERON/56/UBERON_0001056.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001056 * *Label* = corpus cardiacum - * *Definition* = One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000432[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system] + * *Definition* = One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000432, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system ] * *Comment* = will be ceded to arthropod anatomy ontology ## Synonyms - * corpora cardiaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000432[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpora cardiaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000432, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001156.md b/md/UBERON/56/UBERON_0001156.md index a1960b4162..df3575a907 100644 --- a/md/UBERON/56/UBERON_0001156.md +++ b/md/UBERON/56/UBERON_0001156.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001156 * *Label* = ascending colon - * *Definition* = Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_colon] + * *Definition* = Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_colon ] * *Comment* = Note that in MA, this is a subclass of colon ## Synonyms - * colon ascendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_colon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spiral colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_colon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * colon ascendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_colon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spiral colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_colon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -22,7 +22,7 @@ * MIAA:0000311 * OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA * SCTID:362162009 - * UMLS:C0227375 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ascending_Colon] + * UMLS:C0227375 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ascending_Colon ] * Wikipedia:Ascending_colon * galen:AscendingColon * http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001256.md b/md/UBERON/56/UBERON_0001256.md index 7e07a7487a..6838249b05 100644 --- a/md/UBERON/56/UBERON_0001256.md +++ b/md/UBERON/56/UBERON_0001256.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001256 * *Label* = wall of urinary bladder - * *Definition* = An anatomical wall that is part of a urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anatomical wall of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urinary bladder wall - * wall of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * wall of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:15902 * MA:0002493 * SCTID:362225003 - * UMLS:C0458421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Wall] + * UMLS:C0458421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Wall ] * ncithesaurus:Bladder_Wall ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001356.md b/md/UBERON/56/UBERON_0001356.md index a3932478b4..d6c4445bd3 100644 --- a/md/UBERON/56/UBERON_0001356.md +++ b/md/UBERON/56/UBERON_0001356.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001356 * *Label* = medial circumflex femoral artery - * *Definition* = The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_circumflex_femoral_artery] + * *Definition* = The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_circumflex_femoral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * medial femoral circumflex artery - * arteria circumflexa femoris medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_circumflex_femoral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria circumflexa femoris medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_circumflex_femoral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001456.md b/md/UBERON/56/UBERON_0001456.md index 1ccb230eef..c365db233b 100644 --- a/md/UBERON/56/UBERON_0001456.md +++ b/md/UBERON/56/UBERON_0001456.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001456 * *Label* = face - * *Definition* = Subdivision of head which consists of the facial skeleton and all layers superficial to it[FMA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24728[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Face] + * *Definition* = Subdivision of head which consists of the facial skeleton and all layers superficial to it[FMA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24728, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Face ] * *Comment* = The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)[vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf] ## Synonyms - * facia/facies [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Face[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003369] + * facia/facies [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Face, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003369 ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A01.456.505 * OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA * SCTID:302549007 - * UMLS:C0015450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Face] + * UMLS:C0015450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Face ] * Wikipedia:Face * galen:Face * http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg @@ -47,8 +47,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = facial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001556.md b/md/UBERON/56/UBERON_0001556.md index 0d822323a1..57802fe316 100644 --- a/md/UBERON/56/UBERON_0001556.md +++ b/md/UBERON/56/UBERON_0001556.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001556 * *Label* = lower urinary tract - * *Definition* = Subdivision of urinary system which consists of the urinary bladder and the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45659] + * *Definition* = Subdivision of urinary system which consists of the urinary bladder and the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45659 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001656.md b/md/UBERON/56/UBERON_0001656.md index 5dd825467a..645dde95b4 100644 --- a/md/UBERON/56/UBERON_0001656.md +++ b/md/UBERON/56/UBERON_0001656.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001656 * *Label* = retromandibular vein - * *Definition* = The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromandibular_vein] + * *Definition* = The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromandibular_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * posterior facial vein - * vena facialis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromandibular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena retromandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromandibular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena facialis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromandibular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena retromandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromandibular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002117 * OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA * SCTID:151299003 - * UMLS:C0226520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporo-maxillary_Vein] + * UMLS:C0226520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporo-maxillary_Vein ] * Wikipedia:Retromandibular_vein * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001756.md b/md/UBERON/56/UBERON_0001756.md index 0f524093b4..f6054d13c7 100644 --- a/md/UBERON/56/UBERON_0001756.md +++ b/md/UBERON/56/UBERON_0001756.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001756 * *Label* = middle ear - * *Definition* = The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0042474[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_ear] + * *Definition* = The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0042474, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_ear ] ## Synonyms - * auris media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002099] - * auris media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_ear[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * auris media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002099 ] + * auris media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_ear, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * NIF_GrossAnatomy:birnlex_1695 * OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA * SCTID:181185000 - * UMLS:C0013455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1695] - * UMLS:C0013455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Ear] - * UMLS:C1268972 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1695] + * UMLS:C0013455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1695 ] + * UMLS:C0013455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Ear ] + * UMLS:C1268972 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1695 ] * VHOG:0000312 * Wikipedia:Middle_ear * XAO:0000191 @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The intermediate portion of the ear which consists of a small air-filled and membrane-lined chamber. It is lodged in the temporal bone and continues with the nasopharynx through the Eustachian tube. It is separated from the external ear by the tympanic membrane and from the inner ear by the fenestrae. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001856.md b/md/UBERON/56/UBERON_0001856.md index af7cfbdbf1..26de4dc2b4 100644 --- a/md/UBERON/56/UBERON_0001856.md +++ b/md/UBERON/56/UBERON_0001856.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001856 * *Label* = semicircular duct - * *Definition* = any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dictionary.reference.com/browse/semicircular+duct] + * *Definition* = any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dictionary.reference.com/browse/semicircular+duct ] * *Comment* = TODO - check canal vs duct. see http://en.wikipedia.org/wiki/File:Gray927.png ## Synonyms - * ductus semicirculares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71880[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * membranous semicircular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000251] + * ductus semicirculares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71880, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * membranous semicircular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000251 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:61122 * MA:0000251 * SCTID:279833009 - * UMLS:C1323109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semicircular_Duct] + * UMLS:C1323109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semicircular_Duct ] * VHOG:0000238 * ncithesaurus:Semicircular_Duct @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus (...); Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0001956.md b/md/UBERON/56/UBERON_0001956.md index b75aa091a7..00d740c42f 100644 --- a/md/UBERON/56/UBERON_0001956.md +++ b/md/UBERON/56/UBERON_0001956.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001956 * *Label* = cartilage of bronchus - * *Definition* = the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010988] + * *Definition* = the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010988 ] ## Synonyms - * bronchi cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchial cartilage - * bronchial cartilage ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010988] - * bronchial trunk cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchial cartilage ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010988 ] + * bronchial trunk cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchus cartilage - * cartilage of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilagines bronchiales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cartilage of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilagines bronchiales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:62649 * MA:0001835 * SCTID:278980009 - * UMLS:C0225604 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Cartilage] + * UMLS:C0225604 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Cartilage ] * ncithesaurus:Bronchus_Cartilage ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002056.md b/md/UBERON/56/UBERON_0002056.md index 05a06a3222..055ea3261b 100644 --- a/md/UBERON/56/UBERON_0002056.md +++ b/md/UBERON/56/UBERON_0002056.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002056 * *Label* = inferior suprarenal artery - * *Definition* = Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_suprarenal_artery] + * *Definition* = Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_suprarenal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria suprarenalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_suprarenal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria suprarenalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_suprarenal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:69264 * MA:0002056 * SCTID:303426004 - * UMLS:C0226334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Suprarenal_Artery] + * UMLS:C0226334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Suprarenal_Artery ] * Wikipedia:Inferior_suprarenal_artery * http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002156.md b/md/UBERON/56/UBERON_0002156.md index e827e4151d..08ca817c6f 100644 --- a/md/UBERON/56/UBERON_0002156.md +++ b/md/UBERON/56/UBERON_0002156.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002156 * *Label* = nucleus raphe magnus - * *Definition* = The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_magnus] + * *Definition* = The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_magnus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * magnus raphe nucleus - * nucleus raphes magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe magnus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1363] - * nucleus raphC) magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RM] - * nucleus raphes magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_magnus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_magnus] - * red nucleus, magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RM] + * nucleus raphes magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe magnus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1363 ] + * nucleus raphC) magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RM ] + * nucleus raphes magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_magnus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_magnus ] + * red nucleus, magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RM ] ## Cross-references @@ -25,8 +25,8 @@ * FMA:72584 * MA:0001024 * NIF_GrossAnatomy:birnlex_1363 - * NeuroNames:739 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1363] - * UMLS:C0175515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1363] + * NeuroNames:739 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1363 ] + * UMLS:C0175515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1363 ] * Wikipedia:Nucleus_raphe_magnus * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002256.md b/md/UBERON/56/UBERON_0002256.md index 551728f7c3..ca30bffc1c 100644 --- a/md/UBERON/56/UBERON_0002256.md +++ b/md/UBERON/56/UBERON_0002256.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002256 * *Label* = dorsal horn of spinal cord - * *Definition* = the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021516[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006282[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_horn_of_spinal_cord[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=36855&atid=440764] + * *Definition* = the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021516, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006282, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_horn_of_spinal_cord, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=36855&atid=440764 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cornu dorsale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000649] - * cornu posterius medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_horn_of_spinal_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256530] - * dorsal gray horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2667] - * dorsal gray matter of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256530] + * cornu dorsale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000649 ] + * cornu posterius medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_horn_of_spinal_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256530 ] + * dorsal gray horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2667 ] + * dorsal gray matter of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256530 ] * dorsal grey column of spinal cord - * dorsal horn spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000649] - * posterior gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256530] - * posterior gray horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256530] + * dorsal horn spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000649 ] + * posterior gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256530 ] + * posterior gray horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256530 ] * posterior grey column of spinal cord - * posterior horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_horn_of_spinal_cord] + * posterior horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_horn_of_spinal_cord ] * spinal cord dorsal horn - * spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2667] - * dorsal grey horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18574] - * dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000649] + * spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2667 ] + * dorsal grey horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18574 ] + * dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000649 ] * dorsal region of mature spinal cord * dorsal region of spinal cord * dorsal spinal cord - * dorsal horn of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DH] - * spinal cord dorsal horns [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dorsal horn of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DH ] + * spinal cord dorsal horns [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -40,8 +40,8 @@ * NeuroNames:1686 * SCTID:180961004 * TAO:0000649 - * UMLS:C0228564 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2667] - * UMLS:C0228575 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord] + * UMLS:C0228564 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2667 ] + * UMLS:C0228575 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord ] * VHOG:0001287 * Wikipedia:Posterior_horn_of_spinal_cord * ZFA:0000649 @@ -70,8 +70,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002356.md b/md/UBERON/56/UBERON_0002356.md index 8bdd106a24..54ac12962f 100644 --- a/md/UBERON/56/UBERON_0002356.md +++ b/md/UBERON/56/UBERON_0002356.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002356 * *Label* = perineum - * *Definition* = Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9579[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineum] + * *Definition* = Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9579, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineum ] * *Comment* = AO Note: FMA has class anal part of perineum, which may be the same as what EHDAA2 calls perineum ## Synonyms * perineal region - * regio perinealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9579[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio perinealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9579, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A01.719 * OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA * SCTID:243990009 - * UMLS:C0031066 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perineum] + * UMLS:C0031066 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perineum ] * Wikipedia:Perineum * galen:Perineum * http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray406.png @@ -49,8 +49,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = perianal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002456.md b/md/UBERON/56/UBERON_0002456.md index 3d272c457a..809666d45d 100644 --- a/md/UBERON/56/UBERON_0002456.md +++ b/md/UBERON/56/UBERON_0002456.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002456 * *Label* = internal thoracic artery - * *Definition* = In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_artery] + * *Definition* = In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_artery ] * *Comment* = note MA has both mammary and thoracic ## Synonyms - * internal mammary artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001982[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW] + * internal mammary artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001982, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW ] * internal thoracic mammary artery - * arteria mammaria interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria thoracica interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria mammaria interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria thoracica interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001984 * OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw * SCTID:244239009 - * UMLS:C0226276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Mammary_Artery] + * UMLS:C0226276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Mammary_Artery ] * Wikipedia:Internal_thoracic_artery * http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png * ncithesaurus:Internal_Mammary_Artery @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002556.md b/md/UBERON/56/UBERON_0002556.md index 6987cfcd7d..36c130c266 100644 --- a/md/UBERON/56/UBERON_0002556.md +++ b/md/UBERON/56/UBERON_0002556.md @@ -6,11 +6,11 @@ ## Synonyms - * corticotectal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72419] - * corticotectal fibres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72419] - * fibrae corticotectales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72419[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortico-tectal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:485] - * tractus corticotectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:485[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corticotectal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72419 ] + * corticotectal fibres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72419 ] + * fibrae corticotectales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72419, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortico-tectal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:485 ] + * tractus corticotectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:485, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,8 +19,8 @@ * BM:CTT * FMA:72419 * NIF_GrossAnatomy:birnlex_1016 - * NeuroNames:485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1016] - * UMLS:C0262216 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1016] + * NeuroNames:485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1016 ] + * UMLS:C0262216 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1016 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002656.md b/md/UBERON/56/UBERON_0002656.md index cb19a509d8..08a37d2652 100644 --- a/md/UBERON/56/UBERON_0002656.md +++ b/md/UBERON/56/UBERON_0002656.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002656 * *Label* = periamygdaloid area - * *Definition* = Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144210] + * *Definition* = Is located ventral to the basal nucleus and has three subdivisions: the periamygdaloid cortex, the medial division, and the sulcal division. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144210 ] ## Synonyms - * periamygdaloid area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * periamygdaloid region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62485] - * semilunar gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62485] - * ventral cortical nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62485] - * cortical amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291] - * gyrus semilunaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:166[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * para-amygdaloid cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62485] - * periamygdalar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:166] - * periamygdaloid cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62485] - * periamygdaloid cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291] - * periamygdaloid region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291] - * posterior amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PA] - * posterior nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PA] - * regio periamygdalaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:166[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semilunar gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291] - * ventral cortical nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1291] + * periamygdaloid area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * periamygdaloid region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62485 ] + * semilunar gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62485 ] + * ventral cortical nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62485 ] + * cortical amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291 ] + * gyrus semilunaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:166, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * para-amygdaloid cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62485 ] + * periamygdalar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:166 ] + * periamygdaloid cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62485 ] + * periamygdaloid cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291 ] + * periamygdaloid region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291 ] + * posterior amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PA ] + * posterior nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PA ] + * regio periamygdalaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:166, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semilunar gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291 ] + * ventral cortical nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1291 ] ## Cross-references @@ -32,8 +32,8 @@ * BM:Tel-Cx-PAM * FMA:62485 * NIF_GrossAnatomy:birnlex_1291 - * NeuroNames:166 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1291] - * UMLS:C0458328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1291] + * NeuroNames:166 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1291 ] + * UMLS:C0458328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1291 ] ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002756.md b/md/UBERON/56/UBERON_0002756.md index 72208973c9..1726a916be 100644 --- a/md/UBERON/56/UBERON_0002756.md +++ b/md/UBERON/56/UBERON_0002756.md @@ -6,18 +6,18 @@ ## Synonyms - * anterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:161] - * cortex cingularis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:161[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus cinguli anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:161[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus limbicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:161[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:161 ] + * cortex cingularis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:161, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus cinguli anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:161, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus limbicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:161, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ACgG * FMA:61916 * NIF_GrossAnatomy:birnlex_1603 - * NeuroNames:161 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1603] - * UMLS:C0175190 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1603] + * NeuroNames:161 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1603 ] + * UMLS:C0175190 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1603 ] * http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_cingulate_cortex.png/200px-Gray727_anterior_cingulate_cortex.png ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002856.md b/md/UBERON/56/UBERON_0002856.md index 4701dafb78..90617d6a5f 100644 --- a/md/UBERON/56/UBERON_0002856.md +++ b/md/UBERON/56/UBERON_0002856.md @@ -6,15 +6,15 @@ ## Synonyms - * second lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6336] - * second lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6336] + * second lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6336 ] + * second lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6336 ] ## Cross-references * EMAPA:25165 * FMA:6336 * NIF_GrossAnatomy:birnlex_2623 - * UMLS:C0501714 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2623] + * UMLS:C0501714 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2623 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0002956.md b/md/UBERON/56/UBERON_0002956.md index 351196fc61..81be1ffabf 100644 --- a/md/UBERON/56/UBERON_0002956.md +++ b/md/UBERON/56/UBERON_0002956.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002956 * *Label* = granular layer of cerebellar cortex - * *Definition* = The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021681] + * *Definition* = The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021681 ] ## Synonyms - * cerebellar granular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021681] + * cerebellar granular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021681 ] * cerebellar granule cell layer * cerebellar granule layer - * cerebellum granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000993] + * cerebellum granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000993 ] * cerebellum granule layer - * granule cell layer of cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_779] - * stratum granulosum cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004425] - * granular layer of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004425] + * granule cell layer of cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_779 ] + * stratum granulosum cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004425 ] + * granular layer of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004425 ] ## Cross-references @@ -24,8 +24,8 @@ * FMA:83140 * MA:0000993 * NIF_GrossAnatomy:birnlex_779 - * NeuroNames:363 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_779] - * UMLS:C1708253 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Granular_Layer_of_the_Cerebellum] + * NeuroNames:363 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_779 ] + * UMLS:C1708253 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Granular_Layer_of_the_Cerebellum ] * ncithesaurus:Granular_Layer_of_the_Cerebellum ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003056.md b/md/UBERON/56/UBERON_0003056.md index 16ab8e9aee..e5d365f06b 100644 --- a/md/UBERON/56/UBERON_0003056.md +++ b/md/UBERON/56/UBERON_0003056.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003056 * *Label* = pre-chordal neural plate - * *Definition* = The portion of neural plate anterior to the mid-hindbrain junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XB:curator] + * *Definition* = The portion of neural plate anterior to the mid-hindbrain junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XB:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -38,8 +38,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003156.md b/md/UBERON/56/UBERON_0003156.md index b08e0ff32e..0b4cff8f1d 100644 --- a/md/UBERON/56/UBERON_0003156.md +++ b/md/UBERON/56/UBERON_0003156.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004494 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000790 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003156 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_0003256.md b/md/UBERON/56/UBERON_0003256.md index 55e1850a64..56b518a6ed 100644 --- a/md/UBERON/56/UBERON_0003256.md +++ b/md/UBERON/56/UBERON_0003256.md @@ -7,9 +7,9 @@ ## Synonyms - * developmental tissue endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endoderm of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * developmental tissue endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endoderm of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003256 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_0003356.md b/md/UBERON/56/UBERON_0003356.md index f1de1a3886..0e54084f08 100644 --- a/md/UBERON/56/UBERON_0003356.md +++ b/md/UBERON/56/UBERON_0003356.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003356 * *Label* = epithelium of nasal septum - * *Definition* = An epithelium that is part of a nasal septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a nasal septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of nasal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal septum epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of nasal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal septum epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasal septum](../../UBERON/06/UBERON_0001706.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003456.md b/md/UBERON/56/UBERON_0003456.md index 638d08e529..a7f90135ec 100644 --- a/md/UBERON/56/UBERON_0003456.md +++ b/md/UBERON/56/UBERON_0003456.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003456 * *Label* = respiratory system lymphatic vessel - * *Definition* = A lymphatic vessel that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymph vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system lymph vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymph vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system lymph vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003556.md b/md/UBERON/56/UBERON_0003556.md index fb16c3562b..dc3fd9e0ea 100644 --- a/md/UBERON/56/UBERON_0003556.md +++ b/md/UBERON/56/UBERON_0003556.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003556 * *Label* = forebrain arachnoid mater - * *Definition* = An arachnoid mater that is part of a forebrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a forebrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arachnoid mater of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forebrain arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forebrain arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arachnoid mater of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forebrain arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forebrain arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003656.md b/md/UBERON/56/UBERON_0003656.md index 539aec3464..6531268eea 100644 --- a/md/UBERON/56/UBERON_0003656.md +++ b/md/UBERON/56/UBERON_0003656.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003656 * *Label* = mesopodium bone - * *Definition* = A bone that is part of a mesopodial skeleton[cjm]. The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpus_and_tarsus_of_land_vertebrates[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a mesopodial skeleton[cjm]. The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpus_and_tarsus_of_land_vertebrates, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * basipodium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * carpal/tarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000295] + * basipodium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * carpal/tarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000295 ] * mesopod bone * mesopodial bone @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesopodium region](../../UBERON/16/UBERON_0006716.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003856.md b/md/UBERON/56/UBERON_0003856.md index af8a645ff1..4cb270e0b8 100644 --- a/md/UBERON/56/UBERON_0003856.md +++ b/md/UBERON/56/UBERON_0003856.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003856 * *Label* = odontogenic mesenchyme - * *Definition* = Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Mesenchyme enclosed by a dental organ that gives rise to an odontogenic papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: we follow ZFA in introducing an additional distinction between the dental papilla and the (uncondensed) mesenchyme. Note that in some species such as zebrafish teeth are not part of the mouth, and sharks have dermal denticles which share similar developmental origins with teeth. For now we assume a NC origin for all and add a taxon restriction to 1st arch mesenchyme ## Synonyms - * dental mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005139] - * dental organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * enamel organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tooth enamel organ mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tooth mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * dental mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005139 ] + * dental organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * enamel organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tooth enamel organ mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tooth mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tooth enamel organ](../../UBERON/76/UBERON_0005176.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesenchyme enclosed by dental organ.[MP] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesenchyme enclosed by dental organ.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0003956.md b/md/UBERON/56/UBERON_0003956.md index b30776601b..0b533f4a7b 100644 --- a/md/UBERON/56/UBERON_0003956.md +++ b/md/UBERON/56/UBERON_0003956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003956 * *Label* = aqueous drainage system - * *Definition* = the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005198] + * *Definition* = the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005198 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0004056.md b/md/UBERON/56/UBERON_0004056.md index efb2172b3d..cdcebc1321 100644 --- a/md/UBERON/56/UBERON_0004056.md +++ b/md/UBERON/56/UBERON_0004056.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004056 * *Label* = primitive groove - * *Definition* = the shallow valley that extends along the length of the primitive streak[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009330[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_groove] + * *Definition* = the shallow valley that extends along the length of the primitive streak[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009330, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_groove ] ## Synonyms @@ -12,7 +12,7 @@ * EHDAA2:0001511 * EHDAA:547 - * UMLS:C1514434 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primitive_Groove] + * UMLS:C1514434 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primitive_Groove ] * Wikipedia:Primitive_groove * ncithesaurus:Primitive_Groove @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A shallow groove, the primitive groove, appears on the surface of the primitive streak, and the anterior end of this groove communicates by means of an aperture, the blastophore, with the yolk-sac[Wikipedia:Primitive_groove]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0004256.md b/md/UBERON/56/UBERON_0004256.md index 2de843fa25..374965f602 100644 --- a/md/UBERON/56/UBERON_0004256.md +++ b/md/UBERON/56/UBERON_0004256.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004256 * *Label* = hindlimb zeugopod muscle - * *Definition* = A muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a hindlimb zeugopod (lower leg) [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: the FMA class "muscle of leg" belongs here, do not move. See notes on UBERON:0000978 for possible terminological confusion over term 'leg' ## Synonyms - * lower leg muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000678] - * calf muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22471[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * lower leg muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000678 ] + * calf muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22471, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0004356.md b/md/UBERON/56/UBERON_0004356.md index 756bb3bb84..31366972a5 100644 --- a/md/UBERON/56/UBERON_0004356.md +++ b/md/UBERON/56/UBERON_0004356.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004356 * *Label* = apical ectodermal ridge - * *Definition* = multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001676[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apical_ectodermal_ridge] + * *Definition* = multilayered ectodermal region at the distal tip of a limb or fin bud necessary for the proper development of the underlying mesenchyme[MP,modified]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001676, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apical_ectodermal_ridge ] * *Comment* = Usage notes: note that media, dorsal fins etc have AERs. Taxon/development notes: The AER of tetrapods regresses after specification of skeletal progenitors, the AER of teleosts form an elongating fin fold[PMID:20574421]. Function notes: maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop ## Synonyms - * AER [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001676] - * crista ectodermalis apicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apical_ectodermal_ridge[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * AER [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001676 ] + * crista ectodermalis apicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apical_ectodermal_ridge, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0010760 * EMAPA:32744 * TAO:0002146 - * UMLS:C1516037 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Apical_Ectodermal_Ridge] + * UMLS:C1516037 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Apical_Ectodermal_Ridge ] * Wikipedia:Apical_ectodermal_ridge * XAO:0004121 * ZFA:0001702 @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Distal ectodermal thickening which forms along the anterior-posterior limb axis. Signaling from this region influences proximal-distal patterning of the limb. Structure is missing in some lineages (salamanders, Eleutherodactylus coqui) however morphologically their indistinct distal ectoderm may still be involved in signaling.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Proliferative region that is part of the developing fin fold or fin.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass proliferative region (TAO:0000098)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0004456.md b/md/UBERON/56/UBERON_0004456.md index 4f0b4cf195..db457dd8ca 100644 --- a/md/UBERON/56/UBERON_0004456.md +++ b/md/UBERON/56/UBERON_0004456.md @@ -8,7 +8,7 @@ ## Synonyms - * sense organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78499] + * sense organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78499 ] ## Cross-references @@ -21,7 +21,7 @@ ## Superclasses * [anatomical system](../../UBERON/67/UBERON_0000467.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) ## Equivalencies @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0004756.md b/md/UBERON/56/UBERON_0004756.md index fe4ff2af95..3d31576c61 100644 --- a/md/UBERON/56/UBERON_0004756.md +++ b/md/UBERON/56/UBERON_0004756.md @@ -7,7 +7,7 @@ ## Synonyms - * dermal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * dermal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [dermis](../../UBERON/67/UBERON_0002067.md) and [has_part](../../BFO/51/BFO_0000051.md) some [skeletal tissue](../../UBERON/55/UBERON_0004755.md) and [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005056.md b/md/UBERON/56/UBERON_0005056.md index 2fd58ebc2a..5cdf05de9c 100644 --- a/md/UBERON/56/UBERON_0005056.md +++ b/md/UBERON/56/UBERON_0005056.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005056 * *Label* = external female genitalia - * *Definition* = An external genitalia that is part of a female reproductive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An external genitalia that is part of a female reproductive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * external female genital organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003100] - * external genitalia of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female external genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45649] - * organa genitalia feminina externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003100] + * external female genital organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003100 ] + * external genitalia of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female external genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45649 ] + * organa genitalia feminina externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003100 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external genitalia](../../UBERON/76/UBERON_0004176.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005156.md b/md/UBERON/56/UBERON_0005156.md index 0fc101b087..a1cd0fb0f0 100644 --- a/md/UBERON/56/UBERON_0005156.md +++ b/md/UBERON/56/UBERON_0005156.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005156 * *Label* = reproductive structure - * *Definition* = An anatomical structure that is part of the reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] + * *Definition* = An anatomical structure that is part of the reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reproductive system](../../UBERON/90/UBERON_0000990.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005256.md b/md/UBERON/56/UBERON_0005256.md index ff11ed68f8..714b5f4db7 100644 --- a/md/UBERON/56/UBERON_0005256.md +++ b/md/UBERON/56/UBERON_0005256.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005256 * *Label* = trunk mesenchyme - * *Definition* = Mesenchyme that is part of a trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trunk and cervical mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002092] + * trunk and cervical mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002092 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005356.md b/md/UBERON/56/UBERON_0005356.md index 1b0a11ee65..dcdc9427bf 100644 --- a/md/UBERON/56/UBERON_0005356.md +++ b/md/UBERON/56/UBERON_0005356.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005356 * *Label* = Rathke's pouch - * *Definition* = a pouch of ectoderm that grows out from the upper surface of the embryonic stomodeum and gives rise to the anterior and intermediate lobes of the pituitary gland[MP]. In embryogenesis, Rathke's pouch is a depression in the roof of the developing mouth in front of the buccopharyngeal membrane. It gives rise to the anterior pituitary (adenohypophysis), a part of the endocrine system[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003817[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rathke's_pouch] + * *Definition* = a pouch of ectoderm that grows out from the upper surface of the embryonic stomodeum and gives rise to the anterior and intermediate lobes of the pituitary gland[MP]. In embryogenesis, Rathke's pouch is a depression in the roof of the developing mouth in front of the buccopharyngeal membrane. It gives rise to the anterior pituitary (adenohypophysis), a part of the endocrine system[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003817, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rathke's_pouch ] * *Comment* = EHDAA2 distinguishes between the adenohypophyseal pouch and it's precursor Rathke's pouch epithelium. Taxon notes: median funnel?-shaped invagination of ectoderm, the nasohypophyseal pouch. It will contribute to the formation of the pituitary gland of the adult lamprey and is homologous to Rathkes pouch and perhaps to Hatschek 's pit (amphioxus).[http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html] ## Synonyms * Rathke pouch * pouch of Rathke - * Rathkes pouch epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001473] - * adenohypophysial pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001588] + * Rathkes pouch epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001473 ] + * adenohypophysial pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001588 ] * Rathke's cleft * Rathke's cyst - * Rathke's pocket [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003817] + * Rathke's pocket [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003817 ] * craniobuccal pouch * craniopharyngeal pouch - * hypophyseal diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * hypophyseal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * nasohypophyseal pouch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pituitary diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003817] + * hypophyseal diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * hypophyseal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * nasohypophyseal pouch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pituitary diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003817 ] ## Cross-references @@ -31,8 +31,8 @@ * NeuroNames:1516 * SCTID:362583008 * SCTID:61127000 - * UMLS:C0229548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rathke_s_Pouch] - * UMLS:C1709841 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rathke_Pouch_Epithelium] + * UMLS:C0229548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rathke_s_Pouch ] + * UMLS:C1709841 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rathke_Pouch_Epithelium ] * VHOG:0000674 * Wikipedia:Rathke's_pouch * XAO:0000430 @@ -63,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005456.md b/md/UBERON/56/UBERON_0005456.md index 3af1c5d958..41bb6a2b02 100644 --- a/md/UBERON/56/UBERON_0005456.md +++ b/md/UBERON/56/UBERON_0005456.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005456 * *Label* = jugular foramen - * *Definition* = The jugular foramen is a large aperture in the base of the skull. It is located behind the carotid canal and is formed in front by the petrous portion of the temporal, and behind by the occipital; it is generally larger on the right than on the left side [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jugular_foramen] + * *Definition* = The jugular foramen is a large aperture in the base of the skull. It is located behind the carotid canal and is formed in front by the petrous portion of the temporal, and behind by the occipital; it is generally larger on the right than on the left side [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jugular_foramen ] ## Synonyms - * Posterior lacerate foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56432] - * foramen jugulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jugular_foramen] + * Posterior lacerate foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56432 ] + * foramen jugulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jugular_foramen ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:18713 * FMA:56432 * SCTID:361735006 - * UMLS:C0222712 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Jugular_Foramen] + * UMLS:C0222712 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Jugular_Foramen ] * VHOG:0001113 * Wikipedia:Jugular_foramen * http://upload.wikimedia.org/wikipedia/commons/f/fa/Foramenjugulare.PNG @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of a pair of openings between the lateral part of the occipital bone and the petrous part of the temporal bones in the skull. The foramen contains the inferior petrosal sinus; the transverse sinus; some meningeal branches of the occipital and ascending pharyngeal arteries; and the glossopharyngeal, vagus, and accessory nerves. [Free_Online_Medical_Dictionary] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass braincase and otic capsule opening (AAO:0000051)[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005656.md b/md/UBERON/56/UBERON_0005656.md index 4de5afc4a2..fc1c1011ce 100644 --- a/md/UBERON/56/UBERON_0005656.md +++ b/md/UBERON/56/UBERON_0005656.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005656 * *Label* = lens vesicle epithelium - * *Definition* = An epithelium that is part of a lens vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a lens vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lens vesicle](../../UBERON/26/UBERON_0005426.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005856.md b/md/UBERON/56/UBERON_0005856.md index 32677acd43..62d92d1c3e 100644 --- a/md/UBERON/56/UBERON_0005856.md +++ b/md/UBERON/56/UBERON_0005856.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005856 * *Label* = developing mesenchymal condensation - * *Definition* = A delimited region of dense mesenchyme within looser mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000148] + * *Definition* = A delimited region of dense mesenchyme within looser mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000148 ] ## Synonyms - * mesenchyme condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25351] + * mesenchyme condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25351 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0005956.md b/md/UBERON/56/UBERON_0005956.md index ac5ec286de..8563ec2d2c 100644 --- a/md/UBERON/56/UBERON_0005956.md +++ b/md/UBERON/56/UBERON_0005956.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005956 * *Label* = outflow part of left ventricle - * *Definition* = Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9473] + * *Definition* = Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9473 ] ## Synonyms * LVOT - * aortic vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9473] - * left ventricular outflow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9473] - * left ventricular outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0011103] - * outflow tract of left ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9473] - * vestibulum aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9473[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aortic vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9473 ] + * left ventricular outflow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9473 ] + * left ventricular outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0011103 ] + * outflow tract of left ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9473 ] + * vestibulum aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9473, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract of ventricle](../../UBERON/37/UBERON_0005337.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006056.md b/md/UBERON/56/UBERON_0006056.md index cc0eeedc55..77f1a93d78 100644 --- a/md/UBERON/56/UBERON_0006056.md +++ b/md/UBERON/56/UBERON_0006056.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006256.md b/md/UBERON/56/UBERON_0006256.md index 4ee0ff03f1..01cde43572 100644 --- a/md/UBERON/56/UBERON_0006256.md +++ b/md/UBERON/56/UBERON_0006256.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006356.md b/md/UBERON/56/UBERON_0006356.md index e1e2c6cadb..6ca6904a88 100644 --- a/md/UBERON/56/UBERON_0006356.md +++ b/md/UBERON/56/UBERON_0006356.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006356 * *Label* = epigastric vein - * *Definition* = Either of two veins including the inferior and superior epigastric veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Epigastric_Vein] + * *Definition* = Either of two veins including the inferior and superior epigastric veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Epigastric_Vein ] ## Synonyms @@ -12,7 +12,7 @@ * EMAPA:18759 * MA:0002114 - * UMLS:C1707930 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epigastric_Vein] + * UMLS:C1707930 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epigastric_Vein ] * Wikipedia:Epigastric_veins * ncithesaurus:Epigastric_Vein @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006456.md b/md/UBERON/56/UBERON_0006456.md index 76c488e1fb..5ee0b7e99c 100644 --- a/md/UBERON/56/UBERON_0006456.md +++ b/md/UBERON/56/UBERON_0006456.md @@ -6,16 +6,16 @@ ## Synonyms - * T8 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1398] - * eighth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1398] - * t8 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71174] + * T8 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1398 ] + * eighth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1398 ] + * t8 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71174 ] ## Cross-references * FMA:71174 * NIF_GrossAnatomy:birnlex_1398 * SCTID:278770003 - * UMLS:C0457866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1398] + * UMLS:C0457866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1398 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006656.md b/md/UBERON/56/UBERON_0006656.md index 8e0221545f..9523c229a3 100644 --- a/md/UBERON/56/UBERON_0006656.md +++ b/md/UBERON/56/UBERON_0006656.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006756.md b/md/UBERON/56/UBERON_0006756.md index 66bdd41244..b94d1dc310 100644 --- a/md/UBERON/56/UBERON_0006756.md +++ b/md/UBERON/56/UBERON_0006756.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006756 * *Label* = median lingual swelling - * *Definition* = During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tuberculum_impar] + * *Definition* = During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tuberculum_impar ] * *Comment* = The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview] ## Synonyms - * median lingual swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001081] - * median tongue bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://emedicine.medscape.com/article/845125-overview] + * median lingual swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001081 ] + * median tongue bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://emedicine.medscape.com/article/845125-overview ] * tuberculum impar - * tuberculum linguale mediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tuberculum_impar] + * tuberculum linguale mediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tuberculum_impar ] ## Cross-references @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006856.md b/md/UBERON/56/UBERON_0006856.md index eb8d63e745..fa987ed076 100644 --- a/md/UBERON/56/UBERON_0006856.md +++ b/md/UBERON/56/UBERON_0006856.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006856 * *Label* = interrenal gland - * *Definition* = Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000808[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.00427] + * *Definition* = Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000808, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.00427 ] * *Comment* = Editor notes: check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full ## Synonyms - * interrenal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dev.biologists.org/content/130/10/2107.full] + * interrenal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dev.biologists.org/content/130/10/2107.full ] * interrenal bodies - * interrenal body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000808] + * interrenal body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000808 ] * interrenal gland * interrenal tissue @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues, but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0006956.md b/md/UBERON/56/UBERON_0006956.md index b50b32c4f0..be31e3365b 100644 --- a/md/UBERON/56/UBERON_0006956.md +++ b/md/UBERON/56/UBERON_0006956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006956 * *Label* = buccal mucosa - * *Definition* = The inner lining of the cheeks and lips. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://www.medterms.com/] + * *Definition* = The inner lining of the cheeks and lips. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://www.medterms.com/ ] ## Synonyms @@ -14,7 +14,7 @@ * CALOHA:TS-2349 * FMA:59785 * SCTID:16811007 - * UMLS:C1578559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Buccal_Mucosa] + * UMLS:C1578559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Buccal_Mucosa ] * ncithesaurus:Buccal_Mucosa ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0007156.md b/md/UBERON/56/UBERON_0007156.md index 43d8070172..e2dd25a8b4 100644 --- a/md/UBERON/56/UBERON_0007156.md +++ b/md/UBERON/56/UBERON_0007156.md @@ -6,8 +6,8 @@ ## Synonyms - * inferior thyroid venous tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4728] - * vena thyroidea inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4728] + * inferior thyroid venous tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4728 ] + * vena thyroidea inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4728 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0007356.md b/md/UBERON/56/UBERON_0007356.md index bc2902eb4c..8db9e8c98c 100644 --- a/md/UBERON/56/UBERON_0007356.md +++ b/md/UBERON/56/UBERON_0007356.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007356 * *Label* = crop - * *Definition* = A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000301[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crop_(anatomy)#Birds] + * *Definition* = A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000301, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crop_(anatomy)#Birds ] * *Comment* = Editor notes: we follow WP and place as part of the esophagus. Taxon notes: Aves specific structure - consider adding functional grouping class. Kardong: some cetaceans have a crop-like structure ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0007656.md b/md/UBERON/56/UBERON_0007656.md index 284e004f2f..2b148fe5d8 100644 --- a/md/UBERON/56/UBERON_0007656.md +++ b/md/UBERON/56/UBERON_0007656.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007656 * *Label* = lateral recess of fourth ventricle - * *Definition* = The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_recess] + * *Definition* = The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_recess ] ## Synonyms - * lateral recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17257] - * fourth ventricle lateral recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V4r] - * lateral recess of the 4th ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LR4V] - * recessus lateralis ventriculi quarti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_recess[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17257 ] + * fourth ventricle lateral recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V4r ] + * lateral recess of the 4th ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LR4V ] + * recessus lateralis ventriculi quarti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_recess, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0007756.md b/md/UBERON/56/UBERON_0007756.md index b892e80616..e35a19a4c6 100644 --- a/md/UBERON/56/UBERON_0007756.md +++ b/md/UBERON/56/UBERON_0007756.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007756 * *Label* = metatarsophalangeal joint of pedal digit 3 - * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note the name of the structure in EMAPA is incorrect ## Synonyms - * metatarsophalangeal joint of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35234] - * metatarsophalangeal joint of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35234[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsophalangeal joint of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35234 ] + * metatarsophalangeal joint of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35234, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pedal digit 3](../../UBERON/17/UBERON_0004317.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0008256.md b/md/UBERON/56/UBERON_0008256.md index 04c613d75d..c6a9003678 100644 --- a/md/UBERON/56/UBERON_0008256.md +++ b/md/UBERON/56/UBERON_0008256.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008256 * *Label* = left clavicle - * *Definition* = A clavicle that is in the left side of a entire appendicular skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A clavicle that is in the left side of a entire appendicular skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [clavicle](../../UBERON/05/UBERON_0001105.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [appendicular skeleton](../../UBERON/91/UBERON_0002091.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0008456.md b/md/UBERON/56/UBERON_0008456.md index 74d1ac731b..6bdaa99bdb 100644 --- a/md/UBERON/56/UBERON_0008456.md +++ b/md/UBERON/56/UBERON_0008456.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008456 * *Label* = superior articular process of lumbar vertebra - * *Definition* = A superior articular process of vertebra that is part of a lumbar vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A superior articular process of vertebra that is part of a lumbar vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cranial articular process of lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16126] + * cranial articular process of lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16126 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) and [superior articular process of vertebra](../../UBERON/79/UBERON_0001079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0008856.md b/md/UBERON/56/UBERON_0008856.md index c281fb773b..789bba48b7 100644 --- a/md/UBERON/56/UBERON_0008856.md +++ b/md/UBERON/56/UBERON_0008856.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008856 * *Label* = stomach muscularis externa - * *Definition* = the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010779] + * *Definition* = the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010779 ] * *Comment* = Histology notes: the muscularis externa in the stomach differs from that of other GI organs in that it has three layers of smooth muscle instead of two[WP]. ## Synonyms - * gastric muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14909] - * muscle layer of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14909] - * muscularis externa of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14909] - * tunica muscularis (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14909] + * gastric muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14909 ] + * muscle layer of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14909 ] + * muscularis externa of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14909 ] + * tunica muscularis (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14909 ] * tunica muscularis gastris ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [wall of stomach](../../UBERON/67/UBERON_0001167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0008956.md b/md/UBERON/56/UBERON_0008956.md index 738a55f622..909e611091 100644 --- a/md/UBERON/56/UBERON_0008956.md +++ b/md/UBERON/56/UBERON_0008956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008956 * *Label* = involucrum - * *Definition* = a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Involucrum] + * *Definition* = a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Involucrum ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0009056.md b/md/UBERON/56/UBERON_0009056.md index b4f76d594d..9cce212127 100644 --- a/md/UBERON/56/UBERON_0009056.md +++ b/md/UBERON/56/UBERON_0009056.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009056 * *Label* = two-pass circulatory system - * *Definition* = A closed circulatory system in which blood passes twice through the heart to supply the body once. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035905[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Double_circulatory_system] + * *Definition* = A closed circulatory system in which blood passes twice through the heart to supply the body once. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035905, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Double_circulatory_system ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0009556.md b/md/UBERON/56/UBERON_0009556.md index 2bffd59622..411c864127 100644 --- a/md/UBERON/56/UBERON_0009556.md +++ b/md/UBERON/56/UBERON_0009556.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009556 * *Label* = long pastern bone - * *Definition* = The proximal phalanx of digit 3 in a horse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pastern] + * *Definition* = The proximal phalanx of digit 3 in a horse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pastern ] * *Comment* = In future this may be merged into a species-neutral phalanx 1 digit III ## Synonyms - * equine phalanx 1 of digit III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * equine phalanx 1 of digit III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0009656.md b/md/UBERON/56/UBERON_0009656.md index fd99c60701..6bdb130666 100644 --- a/md/UBERON/56/UBERON_0009656.md +++ b/md/UBERON/56/UBERON_0009656.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = MA:0001960 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009656 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_0009756.md b/md/UBERON/56/UBERON_0009756.md index ae010a2eec..a335eb4f94 100644 --- a/md/UBERON/56/UBERON_0009756.md +++ b/md/UBERON/56/UBERON_0009756.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009756 * *Label* = spermaceti organ - * *Definition* = An organ that secretes a spermaceti. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ that secretes a spermaceti. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [produces](../../RO/00/RO_0003000.md) some [spermaceti](../../UBERON/55/UBERON_0009755.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0009856.md b/md/UBERON/56/UBERON_0009856.md index eac9881587..8fb48b39b6 100644 --- a/md/UBERON/56/UBERON_0009856.md +++ b/md/UBERON/56/UBERON_0009856.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [has_quality](../../SIO/08/SIO_000008.md) some [saccular](../../PATO/87/PATO_0001987.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0009956.md b/md/UBERON/56/UBERON_0009956.md index 21dc2aa983..9c3233952f 100644 --- a/md/UBERON/56/UBERON_0009956.md +++ b/md/UBERON/56/UBERON_0009956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009956 * *Label* = corpuscle of de Quatrefage - * *Definition* = A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11523831] + * *Definition* = A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11523831 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010056.md b/md/UBERON/56/UBERON_0010056.md index d733ce49a3..91d58459e8 100644 --- a/md/UBERON/56/UBERON_0010056.md +++ b/md/UBERON/56/UBERON_0010056.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010056 * *Label* = future tongue - * *Definition* = A compound organ that has_potential_to_develop_into a tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A compound organ that has_potential_to_develop_into a tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compound organ](../../UBERON/03/UBERON_0003103.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010156.md b/md/UBERON/56/UBERON_0010156.md index 531f94d93b..9d19ad2b05 100644 --- a/md/UBERON/56/UBERON_0010156.md +++ b/md/UBERON/56/UBERON_0010156.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010156 * *Label* = sphenofrontal suture - * *Definition* = The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenofrontal_suture] + * *Definition* = The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenofrontal_suture ] ## Synonyms - * frontosphenoid suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52938] - * sphenofrontal suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52938] - * Sutura sphenofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenofrontal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * frontosphenoid suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52938 ] + * sphenofrontal suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52938 ] + * Sutura sphenofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenofrontal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spheno-frontal suture - * sphenofrontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenofrontal_suture] - * sutura sphenofrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenofrontal_suture] + * sphenofrontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenofrontal_suture ] + * sutura sphenofrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenofrontal_suture ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [sphenoid bone](../../UBERON/77/UBERON_0001677.md) and [connects](../../ts/core#connects.md) some [tetrapod frontal bone](../../UBERON/09/UBERON_0000209.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010256.md b/md/UBERON/56/UBERON_0010256.md index 92112bae1f..e4c6c4c0ac 100644 --- a/md/UBERON/56/UBERON_0010256.md +++ b/md/UBERON/56/UBERON_0010256.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010256 * *Label* = 4th arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 4th arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th pharyngeal arch mesenchyme derived from neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000580] - * mesenchyme derived from neural crest of mesenchyme of 4th arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16772] + * 4th pharyngeal arch mesenchyme derived from neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000580 ] + * mesenchyme derived from neural crest of mesenchyme of 4th arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16772 ] * neural crest derived arch 4 mesenchyme * pharyngeal arch 4 mesenchyme from neural crest * branchial arch 4 mesenchyme from neural crest @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [4th arch mesenchyme](../../UBERON/91/UBERON_0005691.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010356.md b/md/UBERON/56/UBERON_0010356.md index 54d584d7de..a5449643c9 100644 --- a/md/UBERON/56/UBERON_0010356.md +++ b/md/UBERON/56/UBERON_0010356.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010356 * *Label* = primary ossification center - * *Definition* = A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_center#Primary] + * *Definition* = A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_center#Primary ] ## Synonyms - * centrum ossificationis primarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NominaAnatomica:NA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primary ossification centre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75447] - * primarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * centrum ossificationis primarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NominaAnatomica:NA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primary ossification centre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75447 ] + * primarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references * FMA:75447 - * UMLS:C1184750 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Ossification_Center] + * UMLS:C1184750 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Ossification_Center ] * Wikipedia:Ossification_center#Primary * ncithesaurus:Primary_Ossification_Center @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010756.md b/md/UBERON/56/UBERON_0010756.md index 2f16f5e530..d99d4215da 100644 --- a/md/UBERON/56/UBERON_0010756.md +++ b/md/UBERON/56/UBERON_0010756.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010756 * *Label* = spleen follicular dendritic cell network - * *Definition* = the enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008473] + * *Definition* = the enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008473 ] * *Comment* = The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2. ## Synonyms - * spleen FDC network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008473] - * splenic follicular dendritic cell network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008473] - * FDC network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008473] - * FDCN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008473] + * spleen FDC network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008473 ] + * splenic follicular dendritic cell network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008473 ] + * FDC network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008473 ] + * FDCN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008473 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010856.md b/md/UBERON/56/UBERON_0010856.md index ce8304537c..fc02e6b267 100644 --- a/md/UBERON/56/UBERON_0010856.md +++ b/md/UBERON/56/UBERON_0010856.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010856 * *Label* = patagium - * *Definition* = A membranous extension of skin that forms the wing material in animals such as bats. It typically comprises a number of patagial segments, stretching from the side of the body between the forelimb digits and sometimes the hindlimbs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Patagium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://animals.about.com/od/zoologytermsktoz/g/patagium.htm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm] + * *Definition* = A membranous extension of skin that forms the wing material in animals such as bats. It typically comprises a number of patagial segments, stretching from the side of the body between the forelimb digits and sometimes the hindlimbs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Patagium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://animals.about.com/od/zoologytermsktoz/g/patagium.htm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm ] ## Synonyms * flight membrane - * patagia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * patagia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0010956.md b/md/UBERON/56/UBERON_0010956.md index 7d0a1d226b..466da52b42 100644 --- a/md/UBERON/56/UBERON_0010956.md +++ b/md/UBERON/56/UBERON_0010956.md @@ -6,8 +6,8 @@ ## Synonyms - * pars pterygopharyngea (musculus constrictor pharyngis superior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46638] - * pterygopharyngeal part of superior constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46638] + * pars pterygopharyngea (musculus constrictor pharyngis superior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46638 ] + * pterygopharyngeal part of superior constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46638 ] * pterygopharyngeus ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0011156.md b/md/UBERON/56/UBERON_0011156.md index 3029cd39bb..9eaf5d22eb 100644 --- a/md/UBERON/56/UBERON_0011156.md +++ b/md/UBERON/56/UBERON_0011156.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011156 * *Label* = facial skeleton - * *Definition* = Subdivision of skull that consists of the facial bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005274[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_skeleton[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.bartleby.com/107/37.html[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skull that consists of the facial bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005274, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_skeleton, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.bartleby.com/107/37.html, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * facial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53673] - * facial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000318] - * ossa facialia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ossa faciei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * viscerocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * facial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53673 ] + * facial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000318 ] + * ossa facialia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ossa faciei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * viscerocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0011256.md b/md/UBERON/56/UBERON_0011256.md index fb52fa448b..89a5652237 100644 --- a/md/UBERON/56/UBERON_0011256.md +++ b/md/UBERON/56/UBERON_0011256.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011256 * *Label* = rhinarium - * *Definition* = Moist, hairless, crenelated area around nostrils of some mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhinarium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://anthro.palomar.edu/primate/glossary.htm] + * *Definition* = Moist, hairless, crenelated area around nostrils of some mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhinarium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://anthro.palomar.edu/primate/glossary.htm ] * *Comment* = Absent in Tarsiers ## Synonyms @@ -22,7 +22,7 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [external nose](../../UBERON/27/UBERON_0007827.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [philtrum](../../UBERON/02/UBERON_0005402.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) * [surrounds](../../RO/21/RO_0002221.md) some [external naris](../../UBERON/28/UBERON_0005928.md) @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0011756.md b/md/UBERON/56/UBERON_0011756.md index a1bdef0694..198e4fe2b8 100644 --- a/md/UBERON/56/UBERON_0011756.md +++ b/md/UBERON/56/UBERON_0011756.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011756 * *Label* = male genital swelling - * *Definition* = A genital swelling that is part of a male reproductive organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A genital swelling that is part of a male reproductive organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * labioscrotal swelling of male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30509] + * labioscrotal swelling of male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30509 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [genital swelling](../../UBERON/54/UBERON_0011754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive organ](../../UBERON/35/UBERON_0003135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0011856.md b/md/UBERON/56/UBERON_0011856.md index 130bad5147..cf7c1192f0 100644 --- a/md/UBERON/56/UBERON_0011856.md +++ b/md/UBERON/56/UBERON_0011856.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011856 * *Label* = acinus of lactiferous gland - * *Definition* = An acinus that is part of a mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lactiferous gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74438] + * lactiferous gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74438 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0011956.md b/md/UBERON/56/UBERON_0011956.md index 9fb490442f..7dd736557c 100644 --- a/md/UBERON/56/UBERON_0011956.md +++ b/md/UBERON/56/UBERON_0011956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011956 * *Label* = right hepatic vein - * *Definition* = A hepatic vein that is part of a right lobe of liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A hepatic vein that is part of a right lobe of liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hepatic vein](../../UBERON/43/UBERON_0001143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lobe of liver](../../UBERON/14/UBERON_0001114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011956 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0012056.md b/md/UBERON/56/UBERON_0012056.md index c5dd7c4004..cb1caf9ff4 100644 --- a/md/UBERON/56/UBERON_0012056.md +++ b/md/UBERON/56/UBERON_0012056.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012056 * *Label* = left lung upper lobe bronchiole - * *Definition* = A bronchiole that is part of a upper lobe of left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a upper lobe of left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Mouse has single left lobe ## Synonyms @@ -11,7 +11,7 @@ * bronchiole of left cranial lobe * bronchiole of left upper lobe * bronchiole of left upper lobe of lung - * left lung cranial lobe bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000955] + * left lung cranial lobe bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000955 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of left lung](../../UBERON/52/UBERON_0008952.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0012256.md b/md/UBERON/56/UBERON_0012256.md index a568ff589b..cfce2d5b59 100644 --- a/md/UBERON/56/UBERON_0012256.md +++ b/md/UBERON/56/UBERON_0012256.md @@ -29,8 +29,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_147099 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012256 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0012356.md b/md/UBERON/56/UBERON_0012356.md index 56f0f707f1..223986fb03 100644 --- a/md/UBERON/56/UBERON_0012356.md +++ b/md/UBERON/56/UBERON_0012356.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012356 * *Label* = pedal acropodium region - * *Definition* = The segment of the pes that consists of the pedal digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The segment of the pes that consists of the pedal digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note this class refers to an entire limb segment, not just the bones ## Synonyms @@ -12,11 +12,11 @@ * acropodial region of pes * acropodial segment of pes * all toes - * digits of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70664] + * digits of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70664 ] * pedal acropodium region - * set of toes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70664] - * toes set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70664] - * toes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70664] + * set of toes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70664 ] + * toes set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70664 ] + * toes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70664 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acropodium region](../../UBERON/54/UBERON_0012354.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012356 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0012456.md b/md/UBERON/56/UBERON_0012456.md index d081fb5d3e..f109908b68 100644 --- a/md/UBERON/56/UBERON_0012456.md +++ b/md/UBERON/56/UBERON_0012456.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012456 * *Label* = Merkel nerve ending - * *Definition* = mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Merkel_nerve_ending] + * *Definition* = mechanoreceptors found in the skin and mucosa of vertebrates that provide touch information to the brain. The information they provide are those regarding pressure and texture. Each ending consists of a Merkel cell in close apposition with an enlarged nerve terminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Merkel_nerve_ending ] * *Comment* = Location: In mammals, Merkel nerve endings have a wide distribution. Merkel nerve endings are found in the basal layer of glabrous and hairy skin, in hair follicles, and in oral and anal mucosa. In humans, Merkel cells (along with Meissner's corpuscles) occur in the superficial skin layers, and are found clustered beneath the ridges of the fingertips that make up fingerprints. In hairy skin, Merkel nerve endings are clustered into specialized epithelial structures called "touch domes" or "hair disks". (Some other types of mechanoreceptors, such as Pacinian corpuscles and Ruffini endings, are found primarily in subcutaneous tissue.) Merkel receptors are also located in the mammary glands. Wherever they are found, the epithelium is arranged to optimize the transfer of pressure to the ending.[WP] ## Synonyms - * Merkel's disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83606] + * Merkel's disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83606 ] * Merkel's disk * Merkel's receptor * Merkel's tactile disc @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mechanoreceptor](../../UBERON/49/UBERON_0012449.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Merkel cell](../../CL/42/CL_0000242.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0013156.md b/md/UBERON/56/UBERON_0013156.md index 2bfb6eba82..a2bb5801b2 100644 --- a/md/UBERON/56/UBERON_0013156.md +++ b/md/UBERON/56/UBERON_0013156.md @@ -6,7 +6,7 @@ ## Synonyms - * endoderm of mandibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16384] + * endoderm of mandibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16384 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013156 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0013556.md b/md/UBERON/56/UBERON_0013556.md index 1b8b1c570e..77e6483ae4 100644 --- a/md/UBERON/56/UBERON_0013556.md +++ b/md/UBERON/56/UBERON_0013556.md @@ -6,23 +6,23 @@ ## Synonyms - * B09-25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1756] - * Brodmann (1909) area 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1756] - * Brodmann area 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68622] - * Brodmann area 25, subgenual [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1756] - * Brodmann's area 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68622] - * area 25 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68622] - * area 25 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1756] - * area subgenualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1756] - * B09-25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1756[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 25 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1029] + * B09-25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1756 ] + * Brodmann (1909) area 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1756 ] + * Brodmann area 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68622 ] + * Brodmann area 25, subgenual [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1756 ] + * Brodmann's area 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68622 ] + * area 25 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68622 ] + * area 25 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1756 ] + * area subgenualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1756 ] + * B09-25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1756, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 25 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1029 ] ## Cross-references * FMA:68622 * NIF_GrossAnatomy:birnlex_1756 - * NeuroNames:1029 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1756] - * UMLS:C1272543 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1756] + * NeuroNames:1029 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1756 ] + * UMLS:C1272543 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1756 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0013656.md b/md/UBERON/56/UBERON_0013656.md index 257ae6d794..0ba642c550 100644 --- a/md/UBERON/56/UBERON_0013656.md +++ b/md/UBERON/56/UBERON_0013656.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013656 * *Label* = dulla - * *Definition* = a diverticulum on the lingual aspect of the soft palate of male dromedaries which may be inflated with air and be extruded from the oral cavity during rut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0470961694] + * *Definition* = a diverticulum on the lingual aspect of the soft palate of male dromedaries which may be inflated with air and be extruded from the oral cavity during rut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0470961694 ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013656 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0013756.md b/md/UBERON/56/UBERON_0013756.md index e13883972b..0e1b26fa70 100644 --- a/md/UBERON/56/UBERON_0013756.md +++ b/md/UBERON/56/UBERON_0013756.md @@ -6,9 +6,9 @@ ## Synonyms - * blood in vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83067] - * portion of venous blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83067] - * venous blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83067] + * blood in vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83067 ] + * portion of venous blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83067 ] + * venous blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83067 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood](../../UBERON/78/UBERON_0000178.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0014456.md b/md/UBERON/56/UBERON_0014456.md index 15f7c9b8ad..9778513055 100644 --- a/md/UBERON/56/UBERON_0014456.md +++ b/md/UBERON/56/UBERON_0014456.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014456 * *Label* = extraperitoneal space - * *Definition* = The extraperitoneal space is the portion of the abdomen and pelvis which does not lie within peritoneum. It includes: Retroperitoneal space Retropubic space The space in the pelvis is divided into the following components: prevesical space perivesical space perirectal space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extraperitoneal_space] + * *Definition* = The extraperitoneal space is the portion of the abdomen and pelvis which does not lie within peritoneum. It includes: Retroperitoneal space Retropubic space The space in the pelvis is divided into the following components: prevesical space perivesical space perirectal space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extraperitoneal_space ] ## Synonyms - * spatium extraperitoneale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extraperitoneal_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spatium extraperitoneale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extraperitoneal_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14730 * SCTID:368076004 - * UMLS:C0230197 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extraperitoneal_Space] + * UMLS:C0230197 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extraperitoneal_Space ] * Wikipedia:Extraperitoneal_space * ncithesaurus:Extraperitoneal_Space @@ -33,8 +33,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = extraperitoneal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014456 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0014556.md b/md/UBERON/56/UBERON_0014556.md index 2e20a9e910..14f0ddad09 100644 --- a/md/UBERON/56/UBERON_0014556.md +++ b/md/UBERON/56/UBERON_0014556.md @@ -6,8 +6,8 @@ ## Synonyms - * CA3 part of stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4121[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA3 stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4121] + * CA3 part of stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4121, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA3 stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4121 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum radiatum](../../UBERON/72/UBERON_0005372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014556 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0014756.md b/md/UBERON/56/UBERON_0014756.md index 4dbe067b98..11b4327197 100644 --- a/md/UBERON/56/UBERON_0014756.md +++ b/md/UBERON/56/UBERON_0014756.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014756 * *Label* = Wulst - * *Definition* = A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930] + * *Definition* = A nuclear complex in the avian telecephalon dorsal to the DVR. The Wulst has telencephalic circuitry similar to the DVR. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014756 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0014856.md b/md/UBERON/56/UBERON_0014856.md index 7e871305b2..0fa6438a99 100644 --- a/md/UBERON/56/UBERON_0014856.md +++ b/md/UBERON/56/UBERON_0014856.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014856 * *Label* = cysticercus stage - * *Definition* = The larval form of any of the Taenia tapeworms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003168[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://www.medterms.com/] + * *Definition* = The larval form of any of the Taenia tapeworms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003168, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://www.medterms.com/ ] ## Synonyms - * cysticercus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003168] + * cysticercus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003168 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014856 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_0015056.md b/md/UBERON/56/UBERON_0015056.md index fd82a65c91..d4fc0af54d 100644 --- a/md/UBERON/56/UBERON_0015056.md +++ b/md/UBERON/56/UBERON_0015056.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015056 * *Label* = ischial endochondral element - * *Definition* = A ischial bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A ischial bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * ischial element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * ischial skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * ischial element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * ischial skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [ischial cartilage element](../../UBERON/54/UBERON_0006254.md)or[ischial pre-cartilage condensation](../../UBERON/55/UBERON_0006255.md)or[ischium](../../UBERON/74/UBERON_0001274.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015056 + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2000156.md b/md/UBERON/56/UBERON_2000156.md index 29642c4481..f8a56cf949 100644 --- a/md/UBERON/56/UBERON_2000156.md +++ b/md/UBERON/56/UBERON_2000156.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000156 * *Label* = somite 20 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 20 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2000256.md b/md/UBERON/56/UBERON_2000256.md index 220631089d..3253fd4363 100644 --- a/md/UBERON/56/UBERON_2000256.md +++ b/md/UBERON/56/UBERON_2000256.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_2000356.md b/md/UBERON/56/UBERON_2000356.md index 928f4e5a38..6d3f366887 100644 --- a/md/UBERON/56/UBERON_2000356.md +++ b/md/UBERON/56/UBERON_2000356.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000356 * *Label* = gill raker - * *Definition* = Dermal bone that is a projection present on the inner surface of a branchial arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Dermal bone that is a projection present on the inner surface of a branchial arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * branchioct?nie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000133] - * branchiospine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * gill rakers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000356[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * gill-raker [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000356] - * gillraker [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000356] + * branchioct?nie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000133 ] + * branchiospine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * gill rakers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000356, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * gill-raker [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000356 ] + * gillraker [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000356 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2000456.md b/md/UBERON/56/UBERON_2000456.md index 4af127fce6..48f487d423 100644 --- a/md/UBERON/56/UBERON_2000456.md +++ b/md/UBERON/56/UBERON_2000456.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_2000756.md b/md/UBERON/56/UBERON_2000756.md index 5d7ba84b1f..84d8c5001c 100644 --- a/md/UBERON/56/UBERON_2000756.md +++ b/md/UBERON/56/UBERON_2000756.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 24 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000756[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 24 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000756, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_2000856.md b/md/UBERON/56/UBERON_2000856.md index ffb28353c9..96906a4e58 100644 --- a/md/UBERON/56/UBERON_2000856.md +++ b/md/UBERON/56/UBERON_2000856.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000856 * *Label* = somite 28 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 28 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2000956.md b/md/UBERON/56/UBERON_2000956.md index ab7ec0a6a9..f30a7532c6 100644 --- a/md/UBERON/56/UBERON_2000956.md +++ b/md/UBERON/56/UBERON_2000956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000956 * *Label* = sclerotome somite 20 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001156.md b/md/UBERON/56/UBERON_2001156.md index dd6c88efc2..a430079d8f 100644 --- a/md/UBERON/56/UBERON_2001156.md +++ b/md/UBERON/56/UBERON_2001156.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001256.md b/md/UBERON/56/UBERON_2001256.md index 92ac7b9c93..ff1e25734b 100644 --- a/md/UBERON/56/UBERON_2001256.md +++ b/md/UBERON/56/UBERON_2001256.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001456.md b/md/UBERON/56/UBERON_2001456.md index 5d9b1647b1..7abb315258 100644 --- a/md/UBERON/56/UBERON_2001456.md +++ b/md/UBERON/56/UBERON_2001456.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001456 * *Label* = pectoral fin endoskeletal disc - * *Definition* = A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * fin plate cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001456] + * fin plate cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001456 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001656.md b/md/UBERON/56/UBERON_2001656.md index 2ba8c3aef9..fa72d4feb3 100644 --- a/md/UBERON/56/UBERON_2001656.md +++ b/md/UBERON/56/UBERON_2001656.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001656 * *Label* = upper pharyngeal 5 tooth plate - * *Definition* = Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * upper pharyngeal 5 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001656] + * upper pharyngeal 5 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001656 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001756.md b/md/UBERON/56/UBERON_2001756.md index 661aa40c2d..6861fe8b5c 100644 --- a/md/UBERON/56/UBERON_2001756.md +++ b/md/UBERON/56/UBERON_2001756.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001856.md b/md/UBERON/56/UBERON_2001856.md index d5293c1d27..18dfa80166 100644 --- a/md/UBERON/56/UBERON_2001856.md +++ b/md/UBERON/56/UBERON_2001856.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001856 * *Label* = gill ray - * *Definition* = Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2001956.md b/md/UBERON/56/UBERON_2001956.md index 17b808c891..fe517c4fe0 100644 --- a/md/UBERON/56/UBERON_2001956.md +++ b/md/UBERON/56/UBERON_2001956.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001956 * *Label* = epibranchial 1 bone proximal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * epibranchial 1 anterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001956] - * epibranchial 1 mesial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001956] + * epibranchial 1 anterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001956 ] + * epibranchial 1 mesial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001956 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2002056.md b/md/UBERON/56/UBERON_2002056.md index 330fd4dbac..b35af1f393 100644 --- a/md/UBERON/56/UBERON_2002056.md +++ b/md/UBERON/56/UBERON_2002056.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2002256.md b/md/UBERON/56/UBERON_2002256.md index 9cb6cb4234..2b5c4fad63 100644 --- a/md/UBERON/56/UBERON_2002256.md +++ b/md/UBERON/56/UBERON_2002256.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002256 * *Label* = blind side - * *Definition* = Organism subdivision that is the side of the body lacking eyes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Organism subdivision that is the side of the body lacking eyes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2005056.md b/md/UBERON/56/UBERON_2005056.md index c525d6908f..daa032ba46 100644 --- a/md/UBERON/56/UBERON_2005056.md +++ b/md/UBERON/56/UBERON_2005056.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005056 * *Label* = palatocerebral vein - * *Definition* = Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PLV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005056] + * PLV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005056 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_2005256.md b/md/UBERON/56/UBERON_2005256.md index c6c0ca4533..57835ad4c4 100644 --- a/md/UBERON/56/UBERON_2005256.md +++ b/md/UBERON/56/UBERON_2005256.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005256 * *Label* = intervillus pockets - * *Definition* = A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-050209-3] + * *Definition* = A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-050209-3 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3000656.md b/md/UBERON/56/UBERON_3000656.md index 05d14cdf41..5534af411a 100644 --- a/md/UBERON/56/UBERON_3000656.md +++ b/md/UBERON/56/UBERON_3000656.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000656 * *Label* = processus posterodorsalis of lamella alaris - * *Definition* = Posterior process of the lamella alaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior process of the lamella alaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3000756.md b/md/UBERON/56/UBERON_3000756.md index 616626e90f..5cf5ef2287 100644 --- a/md/UBERON/56/UBERON_3000756.md +++ b/md/UBERON/56/UBERON_3000756.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000756 * *Label* = crista dorsalis humeri - * *Definition* = Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * crista dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000756] + * crista dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000756 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3000856.md b/md/UBERON/56/UBERON_3000856.md index 37b3940703..c8750474db 100644 --- a/md/UBERON/56/UBERON_3000856.md +++ b/md/UBERON/56/UBERON_3000856.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000856 * *Label* = intercalary element of fore digit - * *Definition* = Small elements present in all digits of the manus, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small elements present in all digits of the manus, when present in a taxon. Each intercalary element articulates with the anteroventral end of the penultimate phalanx proximally and the distal phalanx distally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3000956.md b/md/UBERON/56/UBERON_3000956.md index 02075fa248..28d6392f27 100644 --- a/md/UBERON/56/UBERON_3000956.md +++ b/md/UBERON/56/UBERON_3000956.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000956 * *Label* = hypobranchial II - * *Definition* = Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Duellman_and_Trueb_1994] + * *Definition* = Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Duellman_and_Trueb_1994 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3010156.md b/md/UBERON/56/UBERON_3010156.md index 29698345a7..cda02856ea 100644 --- a/md/UBERON/56/UBERON_3010156.md +++ b/md/UBERON/56/UBERON_3010156.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3000087 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_3010256.md b/md/UBERON/56/UBERON_3010256.md index 269d0f5a31..ed3b0fef05 100644 --- a/md/UBERON/56/UBERON_3010256.md +++ b/md/UBERON/56/UBERON_3010256.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000017 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010302 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_3010456.md b/md/UBERON/56/UBERON_3010456.md index 39272d80f5..cdf2034625 100644 --- a/md/UBERON/56/UBERON_3010456.md +++ b/md/UBERON/56/UBERON_3010456.md @@ -6,7 +6,7 @@ ## Synonyms - * ventral blastopore lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010456] + * ventral blastopore lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010456 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_3010556.md b/md/UBERON/56/UBERON_3010556.md index 10e80619c0..1df42971cf 100644 --- a/md/UBERON/56/UBERON_3010556.md +++ b/md/UBERON/56/UBERON_3010556.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010556 * *Label* = obsolete mesodermal cell - * *Definition* = A cell of the middle germ layer of the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A cell of the middle germ layer of the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * mesoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010556] - * mesoderm cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010556] + * mesoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010556 ] + * mesoderm cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010556 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000222 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/56/UBERON_4200056.md b/md/UBERON/56/UBERON_4200056.md index 6967d265b6..4429500f5e 100644 --- a/md/UBERON/56/UBERON_4200056.md +++ b/md/UBERON/56/UBERON_4200056.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/56/UBERON_4200156.md b/md/UBERON/56/UBERON_4200156.md index 6b6573bfe5..3db6255771 100644 --- a/md/UBERON/56/UBERON_4200156.md +++ b/md/UBERON/56/UBERON_4200156.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0000057.md b/md/UBERON/57/UBERON_0000057.md index 0e696f0f82..9ac2be7557 100644 --- a/md/UBERON/57/UBERON_0000057.md +++ b/md/UBERON/57/UBERON_0000057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000057 * *Label* = urethra - * *Definition* = A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethra] + * *Definition* = A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethra ] ## Synonyms @@ -23,7 +23,7 @@ * MIAA:0000121 * OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA * SCTID:302513006 - * UMLS:C0041967 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urethra] + * UMLS:C0041967 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urethra ] * VHOG:0001264 * Wikipedia:Urethra * XAO:0000153 @@ -60,8 +60,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = urethral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0000157.md b/md/UBERON/57/UBERON_0000157.md index e94eee27e7..b682b0b720 100644 --- a/md/UBERON/57/UBERON_0000157.md +++ b/md/UBERON/57/UBERON_0000157.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000157 * *Label* = theca interna - * *Definition* = Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Theca_externa#Theca_interna] + * *Definition* = Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Theca_externa#Theca_interna ] ## Synonyms - * ovary theca interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001714] - * theca interna (folliculus ovaricus tertiarius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18658] - * tunica interna of theca folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18658] - * internal coat of capsule of graafian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002851] - * tunica interna thecae folliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002851] + * ovary theca interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001714 ] + * theca interna (folliculus ovaricus tertiarius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18658 ] + * tunica interna of theca folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18658 ] + * internal coat of capsule of graafian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002851 ] + * tunica interna thecae folliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002851 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005183 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0000457.md b/md/UBERON/57/UBERON_0000457.md index faee0a308b..f4a8ad042f 100644 --- a/md/UBERON/57/UBERON_0000457.md +++ b/md/UBERON/57/UBERON_0000457.md @@ -6,8 +6,8 @@ ## Synonyms - * Cavernous branch of cavernous part of internal carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70527] - * ramus sinus cavernosi (pars cavernosa) (arteria carotis interna) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70527[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Cavernous branch of cavernous part of internal carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70527 ] + * ramus sinus cavernosi (pars cavernosa) (arteria carotis interna) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70527, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0000957.md b/md/UBERON/57/UBERON_0000957.md index bb1882f6a2..97a0f36a0b 100644 --- a/md/UBERON/57/UBERON_0000957.md +++ b/md/UBERON/57/UBERON_0000957.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000957 * *Label* = lamina - * *Definition* = Any thin layer or plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamina_of_the_vertebral_arch] + * *Definition* = Any thin layer or plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lamina_of_the_vertebral_arch ] * *Comment* = TODO - merge with cell layer? ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = laminal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001057.md b/md/UBERON/57/UBERON_0001057.md index b7aba677c0..0a7dc94df2 100644 --- a/md/UBERON/57/UBERON_0001057.md +++ b/md/UBERON/57/UBERON_0001057.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001057 * *Label* = corpus allatum - * *Definition* = One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone)[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000291[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Corpora_allata] + * *Definition* = One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone)[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000291, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Corpora_allata ] * *Comment* = will be ceded to arthropod anatomy ontology ## Synonyms - * corpora allata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000291[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpora allata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000291, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001157.md b/md/UBERON/57/UBERON_0001157.md index 17a96ee83a..d77c4d38a2 100644 --- a/md/UBERON/57/UBERON_0001157.md +++ b/md/UBERON/57/UBERON_0001157.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001157 * *Label* = transverse colon - * *Definition* = The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_colon] + * *Definition* = The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_colon ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * colon transversum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_colon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * colon transversum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_colon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MIAA:0000312 * OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA * SCTID:362163004 - * UMLS:C0227386 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Transverse_Colon] + * UMLS:C0227386 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Transverse_Colon ] * Wikipedia:Transverse_colon * galen:TransverseColon * http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001257.md b/md/UBERON/57/UBERON_0001257.md index 5d7eb6895c..ce1ad95f23 100644 --- a/md/UBERON/57/UBERON_0001257.md +++ b/md/UBERON/57/UBERON_0001257.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001257 * *Label* = trigone of urinary bladder - * *Definition* = The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigone_of_urinary_bladder] + * *Definition* = The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigone_of_urinary_bladder ] * *Comment* = Development notes: Embryologically, the trigone of the bladder is derived from the caudal end of mesonephric ducts, which is of mesodermal origin (the rest of the bladder is endodermal). In the female the mesonephric ducts regresses, causing the trigone to be less prominent, but still present[WP] ## Synonyms @@ -11,19 +11,19 @@ * Lieutaud's trigone * bladder trigone * deep trigone - * musculus trigoni vesicae profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15910[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus trigoni vesicae profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15910, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * trigone of bladder - * trigonum vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15910[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trigonum vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15910, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * urinary bladder trigone * vesical trigone - * trigonum vesicae urinariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigone_of_urinary_bladder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trigonum vesicae urinariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigone_of_urinary_bladder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15910 * MA:0002492 * SCTID:272663002 - * UMLS:C0447586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Trigone] + * UMLS:C0447586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Trigone ] * Wikipedia:Trigone_of_urinary_bladder * galen:TrigoneOfUrinaryBladder * http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001357.md b/md/UBERON/57/UBERON_0001357.md index 9a0fc714b9..8159bef2a3 100644 --- a/md/UBERON/57/UBERON_0001357.md +++ b/md/UBERON/57/UBERON_0001357.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001357 * *Label* = inferior rectal artery - * *Definition* = The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_rectal_artery] + * *Definition* = The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_rectal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * inferior hemorrhoidal artery - * arteria haemorrhoidalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_rectal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria rectalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_rectal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria haemorrhoidalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_rectal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria rectalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_rectal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20824 * MA:0001979 * SCTID:244304007 - * UMLS:C0226393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Rectal_Artery] + * UMLS:C0226393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Rectal_Artery ] * Wikipedia:Inferior_rectal_artery * http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001457.md b/md/UBERON/57/UBERON_0001457.md index e2ce352c6a..807688f5d3 100644 --- a/md/UBERON/57/UBERON_0001457.md +++ b/md/UBERON/57/UBERON_0001457.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001457 * *Label* = skin of eyelid - * *Definition* = A zone of skin that is part of a eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blepharon zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blepharon zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * eyelid skin - * eyelid zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * eyelid zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:24760 * MA:0001256 * SCTID:245947005 - * UMLS:C0222088 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelid_Skin] + * UMLS:C0222088 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelid_Skin ] * ncithesaurus:Eyelid_Skin ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001557.md b/md/UBERON/57/UBERON_0001557.md index 1e73d9420e..055be16107 100644 --- a/md/UBERON/57/UBERON_0001557.md +++ b/md/UBERON/57/UBERON_0001557.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001557 * *Label* = upper respiratory tract - * *Definition* = Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_respiratory_tract] + * *Definition* = Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_respiratory_tract ] * *Comment* = Some specify that the glottis (vocal cords) is the defining line between the upper and lower respiratory tracts;[2] yet even others make the line at the cricoid cartilage.[WP] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001557 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001657.md b/md/UBERON/57/UBERON_0001657.md index 8791de663d..c886a2f8f9 100644 --- a/md/UBERON/57/UBERON_0001657.md +++ b/md/UBERON/57/UBERON_0001657.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001657 * *Label* = superficial temporal vein - * *Definition* = The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_temporal_vein] + * *Definition* = The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_temporal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae temporales superficiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_temporal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae temporales superficiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_temporal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002242 * OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA * SCTID:150087005 - * UMLS:C0226521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superficial_Temporal_Vein] + * UMLS:C0226521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superficial_Temporal_Vein ] * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png * ncithesaurus:Superficial_Temporal_Vein @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001757.md b/md/UBERON/57/UBERON_0001757.md index 24a05d9d8c..dd0ddbd742 100644 --- a/md/UBERON/57/UBERON_0001757.md +++ b/md/UBERON/57/UBERON_0001757.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001757 * *Label* = pinna - * *Definition* = Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pinna_(anatomy)] + * *Definition* = Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pinna_(anatomy) ] ## Synonyms @@ -11,9 +11,9 @@ * auricle of ear * auricle of external ear * auricula (auris externa) - * auricula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricula] + * auricula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricula ] * pinna of ear - * pinnae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * pinnae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0000259 * OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA * SCTID:421159007 - * UMLS:C0928075 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auricle] + * UMLS:C0928075 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auricle ] * VHOG:0000460 * Wikipedia:Pinna_(anatomy) * galen:Auricle @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external expanded part of the ear characterized by a funnel-shaped structure through which the sound vibrations are received. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001857.md b/md/UBERON/57/UBERON_0001857.md index 264314a69c..bf1772f781 100644 --- a/md/UBERON/57/UBERON_0001857.md +++ b/md/UBERON/57/UBERON_0001857.md @@ -7,7 +7,7 @@ ## Synonyms - * superior semicircular duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000246] + * superior semicircular duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000246 ] ## Cross-references @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0001957.md b/md/UBERON/57/UBERON_0001957.md index b090a99a32..afb99a0d9b 100644 --- a/md/UBERON/57/UBERON_0001957.md +++ b/md/UBERON/57/UBERON_0001957.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001957 * *Label* = submucosa of bronchus - * *Definition* = A submucosa that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchi submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchial submucosa - * bronchial trunk submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchial trunk submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * bronchus submucosa - * submucosa of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucous layer of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002108] + * submucosa of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucous layer of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002108 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:62653 * MA:0001837 * SCTID:85546005 - * UMLS:C0225601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Submucosa] + * UMLS:C0225601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Submucosa ] * ncithesaurus:Bronchus_Submucosa ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002057.md b/md/UBERON/57/UBERON_0002057.md index a558f5d56a..847e193e77 100644 --- a/md/UBERON/57/UBERON_0002057.md +++ b/md/UBERON/57/UBERON_0002057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002057 * *Label* = phrenic artery - * *Definition* = An artery that supplies the diaphragm. In humans this includes the superior and inferior phrenic arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An artery that supplies the diaphragm. In humans this includes the superior and inferior phrenic arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:69330 * MA:0002019 - * UMLS:C1181536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Phrenic_Artery] + * UMLS:C1181536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Phrenic_Artery ] * ncithesaurus:Phrenic_Artery ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [supplies](../../FMA/03/FMA_86003.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) and [systemic artery](../../UBERON/73/UBERON_0004573.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002157.md b/md/UBERON/57/UBERON_0002157.md index d7f661160f..70c19b28f0 100644 --- a/md/UBERON/57/UBERON_0002157.md +++ b/md/UBERON/57/UBERON_0002157.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002157 * *Label* = nucleus raphe pallidus - * *Definition* = The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_pallidus] + * *Definition* = The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_pallidus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nucleus raphes pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72586[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus raphes pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72586, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pallidal raphe nucleus * raphe pallidus nucleus - * nucleus raphC) pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RPA] - * nucleus raphes pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_pallidus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus raphC) pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RPA ] + * nucleus raphes pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_pallidus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:72586 * MA:0001051 * NIF_GrossAnatomy:birnlex_1375 - * NeuroNames:741 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1375] - * UMLS:C0175517 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1375] + * NeuroNames:741 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1375 ] + * UMLS:C0175517 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1375 ] * Wikipedia:Nucleus_raphe_pallidus * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002257.md b/md/UBERON/57/UBERON_0002257.md index c0758875b0..9e1e949c09 100644 --- a/md/UBERON/57/UBERON_0002257.md +++ b/md/UBERON/57/UBERON_0002257.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002257 * *Label* = ventral horn of spinal cord - * *Definition* = the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021517[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005112[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_spinal_cord[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=36855&atid=440764] + * *Definition* = the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021517, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005112, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_spinal_cord, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=36855&atid=440764 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anterior gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256541] - * anterior gray horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256541] + * anterior gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256541 ] + * anterior gray horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256541 ] * anterior grey column of spinal cord - * anterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2668] - * spinal cord anterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2668] + * anterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2668 ] + * spinal cord anterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2668 ] * spinal cord ventral horn - * ventral gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256541] - * ventral gray matter of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256541] + * ventral gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256541 ] + * ventral gray matter of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256541 ] * ventral grey column of spinal cord - * ventral grey horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2668] - * ventral horn spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000702] + * ventral grey horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2668 ] + * ventral horn spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000702 ] * ventral region of spinal cord * ventral spinal cord - * anterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_spinal_cord] - * anterior column of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_spinal_cord] - * anterior horn (spinal cord) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_spinal_cord] - * cornu anterius medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_horn_of_spinal_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral horn of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VH] - * ventral horns spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001288[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * anterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_spinal_cord ] + * anterior column of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_spinal_cord ] + * anterior horn (spinal cord) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_spinal_cord ] + * cornu anterius medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_horn_of_spinal_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral horn of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VH ] + * ventral horns spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001288, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -38,8 +38,8 @@ * NeuroNames:1751 * SCTID:279443000 * TAO:0000702 - * UMLS:C0228569 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2668] - * UMLS:C0228590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventral_Horn_of_the_Spinal_Cord] + * UMLS:C0228569 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2668 ] + * UMLS:C0228590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventral_Horn_of_the_Spinal_Cord ] * VHOG:0001288 * Wikipedia:Anterior_horn_of_spinal_cord * ZFA:0000702 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior horn of the spinal cord (or anterior cornu, or anterior column, or ventral horn) is the ventral (front) grey matter section of the spinal cord. The anterior horn contains motor neurons that affect the axial muscles while the posterior horn receives information regarding touch and sensation. The anterior horn is where the cell bodies of alpha motorneurons are located[Wikipedia:Anterior_horn_of_spinal_cord]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002357.md b/md/UBERON/57/UBERON_0002357.md index c4cac0c474..c455f9bec5 100644 --- a/md/UBERON/57/UBERON_0002357.md +++ b/md/UBERON/57/UBERON_0002357.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002357 * *Label* = serous pericardium - * *Definition* = Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serous_pericardium] + * *Definition* = Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serous_pericardium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * serous portion of pericardium - * pericardium serosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serous_pericardium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pericardium serosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serous_pericardium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002457.md b/md/UBERON/57/UBERON_0002457.md index 9f4a28b446..66de838ae8 100644 --- a/md/UBERON/57/UBERON_0002457.md +++ b/md/UBERON/57/UBERON_0002457.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002457 * *Label* = intersomitic artery - * *Definition* = the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010662] + * *Definition* = the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010662 ] ## Synonyms - * intersegmental artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001061] + * intersegmental artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001061 ] ## Cross-references @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Few changes of evolutionary significance occur in the branching pattern of the dorsal aorta. All vertebrates have (...) paired intersegmental arteries to the trunk, tail, and paired appendages.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006001 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002557.md b/md/UBERON/57/UBERON_0002557.md index 30f7b9c3c6..d54437d2f9 100644 --- a/md/UBERON/57/UBERON_0002557.md +++ b/md/UBERON/57/UBERON_0002557.md @@ -7,18 +7,18 @@ ## Synonyms - * Li [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1018[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * linear nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Li] - * nucleus linearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:519[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rostral and caudal linear nuclei of the raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:519] + * Li [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1018, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * linear nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Li ] + * nucleus linearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:519, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rostral and caudal linear nuclei of the raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:519 ] ## Cross-references * BAMS:Li * FMA:72436 * NIF_GrossAnatomy:birnlex_1018 - * NeuroNames:519 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1018] - * UMLS:C0175404 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1018] + * NeuroNames:519 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1018 ] + * UMLS:C0175404 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1018 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002557 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002657.md b/md/UBERON/57/UBERON_0002657.md index a45c74d156..f0a14cef57 100644 --- a/md/UBERON/57/UBERON_0002657.md +++ b/md/UBERON/57/UBERON_0002657.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002657 * *Label* = posterior parahippocampal gyrus - * *Definition* = The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_parahippocampal_gyrus] + * *Definition* = The posterior parahippocampal gyrus is a portion of the parahippocampal gyrus. It can show deterioration in Alzheimer's disease. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_parahippocampal_gyrus ] ## Synonyms * parahippocampal gyrus (amaral) - * parahippocampal gyrus (insausti) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1295] - * gyrus parahippocampalis, pars posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:169[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * parahippocampal gyrus (insausti) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1295 ] + * gyrus parahippocampalis, pars posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:169, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PPHG * FMA:67966 * NIF_GrossAnatomy:birnlex_1295 - * NeuroNames:169 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1295] - * UMLS:C0694597 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1295] + * NeuroNames:169 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1295 ] + * UMLS:C0694597 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1295 ] * Wikipedia:Posterior_parahippocampal_gyrus ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002757.md b/md/UBERON/57/UBERON_0002757.md index 3a02828c6b..a5a97a4032 100644 --- a/md/UBERON/57/UBERON_0002757.md +++ b/md/UBERON/57/UBERON_0002757.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002757 * *Label* = regional part of epithalamus - * *Definition* = A regional part of brain that is part of a epithalamus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a epithalamus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithalamus segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62013] - * segment of epithalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1607] + * epithalamus segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62013 ] + * segment of epithalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1607 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epithalamus](../../UBERON/99/UBERON_0001899.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002857.md b/md/UBERON/57/UBERON_0002857.md index ce5873e8b8..64bc553fb1 100644 --- a/md/UBERON/57/UBERON_0002857.md +++ b/md/UBERON/57/UBERON_0002857.md @@ -6,15 +6,15 @@ ## Synonyms - * first lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6335] - * first lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6335] + * first lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6335 ] + * first lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6335 ] ## Cross-references * EMAPA:25164 * FMA:6335 * NIF_GrossAnatomy:birnlex_2624 - * UMLS:C0501713 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2624] + * UMLS:C0501713 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2624 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0002957.md b/md/UBERON/57/UBERON_0002957.md index 2851aa0d30..a251b6e530 100644 --- a/md/UBERON/57/UBERON_0002957.md +++ b/md/UBERON/57/UBERON_0002957.md @@ -6,19 +6,19 @@ ## Synonyms - * caudal central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72426] - * caudal central nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72426] + * caudal central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72426 ] + * caudal central nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72426 ] * oculomotor nerve central caudal nucleus - * CC3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_780[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus caudalis centralis oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus centralis nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * CC3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_780, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus caudalis centralis oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus centralis nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:CC3 * FMA:72426 * NIF_GrossAnatomy:birnlex_780 - * NeuroNames:500 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_780] + * NeuroNames:500 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_780 ] * SCTID:369239004 ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003057.md b/md/UBERON/57/UBERON_0003057.md index 2f768c5cd7..24d7603dcb 100644 --- a/md/UBERON/57/UBERON_0003057.md +++ b/md/UBERON/57/UBERON_0003057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003057 * *Label* = chordal neural plate - * *Definition* = The portion of neural plate posterior to the mid-hindbrain junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XB:curator] + * *Definition* = The portion of neural plate posterior to the mid-hindbrain junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XB:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003157.md b/md/UBERON/57/UBERON_0003157.md index b582db544b..519e8e3c6b 100644 --- a/md/UBERON/57/UBERON_0003157.md +++ b/md/UBERON/57/UBERON_0003157.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004496 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000776 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003157 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/57/UBERON_0003257.md b/md/UBERON/57/UBERON_0003257.md index 649084e930..d701b45a9e 100644 --- a/md/UBERON/57/UBERON_0003257.md +++ b/md/UBERON/57/UBERON_0003257.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003257 * *Label* = yolk sac endoderm - * *Definition* = An extraembryonic structure that develops_from a endoderm and is part of a yolk sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An extraembryonic structure that develops_from a endoderm and is part of a yolk sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [extraembryonic structure](../../UBERON/78/UBERON_0000478.md) and [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003357.md b/md/UBERON/57/UBERON_0003357.md index ab89c6b87a..71f4a77414 100644 --- a/md/UBERON/57/UBERON_0003357.md +++ b/md/UBERON/57/UBERON_0003357.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003357 * *Label* = epithelium of tongue - * *Definition* = An epithelium that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies. ## Synonyms - * epithelial tissue of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lingual epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000992] + * epithelial tissue of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lingual epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000992 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:17881 * EMAPA:18872 * MA:0001592 - * UMLS:C1710436 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tongue_Epithelium] + * UMLS:C1710436 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tongue_Epithelium ] * ncithesaurus:Tongue_Epithelium ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003457.md b/md/UBERON/57/UBERON_0003457.md index 2b230f0d35..35e962e196 100644 --- a/md/UBERON/57/UBERON_0003457.md +++ b/md/UBERON/57/UBERON_0003457.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003457 * *Label* = head bone - * *Definition* = A bone that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Different sources vary regarding which bones are craniofacial; e.g. hyoid bone ## Synonyms - * adult head bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult head bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * head bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * craniofacial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * adult head bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult head bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * head bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * craniofacial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003557.md b/md/UBERON/57/UBERON_0003557.md index cb74648e9c..ac6e1af9b5 100644 --- a/md/UBERON/57/UBERON_0003557.md +++ b/md/UBERON/57/UBERON_0003557.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003557 * *Label* = midbrain arachnoid mater - * *Definition* = An arachnoid mater that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arachnoid mater of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesencephalon arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000233] + * arachnoid mater of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesencephalon arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000233 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Arachnoid mater that is part of the midbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003557 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003657.md b/md/UBERON/57/UBERON_0003657.md index ea4e8f78b5..3be5b29dba 100644 --- a/md/UBERON/57/UBERON_0003657.md +++ b/md/UBERON/57/UBERON_0003657.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003657 * *Label* = limb joint - * *Definition* = Any joint that is part of a (free) limb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any joint that is part of a (free) limb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses ## Synonyms * joint of limb - * joint of limb skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal limb joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0036023] + * joint of limb skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal limb joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0036023 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003857.md b/md/UBERON/57/UBERON_0003857.md index 9e88208d16..0f103b0d4b 100644 --- a/md/UBERON/57/UBERON_0003857.md +++ b/md/UBERON/57/UBERON_0003857.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003857 * *Label* = upper eyelid mesenchyme - * *Definition* = Mesenchyme that is part of a upper eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a upper eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme of superior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of upper eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior eyelid mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of superior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of upper eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior eyelid mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0003957.md b/md/UBERON/57/UBERON_0003957.md index 1c59125d81..e3008f6bf3 100644 --- a/md/UBERON/57/UBERON_0003957.md +++ b/md/UBERON/57/UBERON_0003957.md @@ -3,16 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003957 * *Label* = Bruch's membrane - * *Definition* = A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005239[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bruch's_membrane] - * *Comment* = TODO - see also + * *Definition* = A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005239, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bruch's_membrane ] ## Synonyms - * Bruch membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.371.894.223.250] - * Bruch's basal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58438] - * basal lamina of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58438] - * lamina basalis (choroid) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58438] - * lamina basilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58438] + * Bruch membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.371.894.223.250 ] + * Bruch's basal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58438 ] + * basal lamina of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58438 ] + * lamina basalis (choroid) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58438 ] + * lamina basilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58438 ] ## Cross-references @@ -42,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004057.md b/md/UBERON/57/UBERON_0004057.md index 748867246e..954be1059a 100644 --- a/md/UBERON/57/UBERON_0004057.md +++ b/md/UBERON/57/UBERON_0004057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004057 * *Label* = skeletal muscle fiber triad - * *Definition* = the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009411] + * *Definition* = the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009411 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004157.md b/md/UBERON/57/UBERON_0004157.md index b353f7ee6b..1eef38b1ed 100644 --- a/md/UBERON/57/UBERON_0004157.md +++ b/md/UBERON/57/UBERON_0004157.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004157 * *Label* = atrial septum primum - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003289] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003289 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004257.md b/md/UBERON/57/UBERON_0004257.md index a5772cd5e9..52777e3994 100644 --- a/md/UBERON/57/UBERON_0004257.md +++ b/md/UBERON/57/UBERON_0004257.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004257 * *Label* = upper leg blood vessel - * *Definition* = A blood vessel that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004357.md b/md/UBERON/57/UBERON_0004357.md index 41cdfdc15b..b6c2c7a553 100644 --- a/md/UBERON/57/UBERON_0004357.md +++ b/md/UBERON/57/UBERON_0004357.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004357 * *Label* = paired limb/fin bud - * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a limb or paired fin. The limb/fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005650[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An outgrowth on the lateral trunk of the embryo that develops into a limb or paired fin. The limb/fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005650, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056] ## Synonyms - * limb - fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001258] + * limb - fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001258 ] * paired appendage bud - * paired limb/fin bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001258] + * paired limb/fin bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001258 ] ## Cross-references @@ -38,8 +38,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod limb is derived from a posterior part of the fin endoskeleton of elasmobranchs and basal bony fish, the so-called metapterygium, a series of endoskeletal elements that is the first to form in the developing paired fins. (...) In addition, there is an independent endoskeletal element called the protopterygium that develops anterior to the metapterygium in many basal fishes (e.g., the bichir and sturgeon). Teleosts have lost the metapterygium whereas the sarcopterygians, on the other hand, have lost the protopterygium. Sarcopterygians thus develop all their endoskeletal structures from the metapterygium and consequently the tetrapod limb skeleton is derived from the metapterygium.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004457.md b/md/UBERON/57/UBERON_0004457.md index b39d6f466a..5224e63298 100644 --- a/md/UBERON/57/UBERON_0004457.md +++ b/md/UBERON/57/UBERON_0004457.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004657.md b/md/UBERON/57/UBERON_0004657.md index ad61815c65..2f389759cd 100644 --- a/md/UBERON/57/UBERON_0004657.md +++ b/md/UBERON/57/UBERON_0004657.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004657 * *Label* = mandible condylar process - * *Definition* = The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001750[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_process] + * *Definition* = The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001750, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_process ] ## Synonyms - * condylar process of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52836] - * mandibular condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001750] - * processus condylaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52836] - * condyle of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_process] - * condyle of the mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_process] - * condyloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_process] - * mandibular condyloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002816] + * condylar process of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52836 ] + * mandibular condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001750 ] + * processus condylaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52836 ] + * condyle of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_process ] + * condyle of the mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_process ] + * condyloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_process ] + * mandibular condyloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002816 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004757.md b/md/UBERON/57/UBERON_0004757.md index cca1f4accb..6c9158c7a5 100644 --- a/md/UBERON/57/UBERON_0004757.md +++ b/md/UBERON/57/UBERON_0004757.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004757 * *Label* = rectal gland - * *Definition* = An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001157] + * *Definition* = An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001157 ] * *Comment* = does not include FMA:15724 Rectal gland // epithelial tissue gland - concentrates & secretes excess Na & Cl in sharks. large shark liver produces copious amounts of urea, making the shark hyperosmotic to seawater, & thus a shark acts like a fresh water fish, constantly gaining water. Excess salts are concentrated by the rectal gland and secreted ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0004857.md b/md/UBERON/57/UBERON_0004857.md index ff04d95dc5..a22b32dbd8 100644 --- a/md/UBERON/57/UBERON_0004857.md +++ b/md/UBERON/57/UBERON_0004857.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004857 * *Label* = skeletal muscle connective tissue - * *Definition* = A connective tissue that surrounds a skeletal muscle tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A connective tissue that surrounds a skeletal muscle tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle interstitial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002868] - * skeletal muscle interstitum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002868] + * connective tissue of skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle interstitial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002868 ] + * skeletal muscle interstitum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002868 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [surrounds](../../RO/21/RO_0002221.md) some [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005057.md b/md/UBERON/57/UBERON_0005057.md index 0a9fc80a08..78fb422d89 100644 --- a/md/UBERON/57/UBERON_0005057.md +++ b/md/UBERON/57/UBERON_0005057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005057 * *Label* = immune organ - * *Definition* = An organ that is part of a immune system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ that is part of a immune system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [immune system](../../UBERON/05/UBERON_0002405.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005157.md b/md/UBERON/57/UBERON_0005157.md index 35a8782765..81d818fc2a 100644 --- a/md/UBERON/57/UBERON_0005157.md +++ b/md/UBERON/57/UBERON_0005157.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005157 * *Label* = epithelial fold - * *Definition* = An epithelial sheet bent on a linear axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060571] + * *Definition* = An epithelial sheet bent on a linear axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060571 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005257.md b/md/UBERON/57/UBERON_0005257.md index ad921ca804..a780c6d508 100644 --- a/md/UBERON/57/UBERON_0005257.md +++ b/md/UBERON/57/UBERON_0005257.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005257 * *Label* = manual digit mesenchyme - * *Definition* = Mesenchyme that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: In EHDAA2, the metacarpal cartilage condensation is considered part of the digits - it might be better to call the whole structure digital ray mesenchyme/condensation ## Synonyms * finger mesenchyme - * fore limb digit mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * anterior limb digital ray mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * finger ray mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * manual digital ray mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * fore limb digit mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * anterior limb digital ray mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * finger ray mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * manual digital ray mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005357.md b/md/UBERON/57/UBERON_0005357.md index 2e10439731..9a2f9fde39 100644 --- a/md/UBERON/57/UBERON_0005357.md +++ b/md/UBERON/57/UBERON_0005357.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005357 * *Label* = brain ependyma - * *Definition* = An ependyma that is part of a brain ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ependyma that is part of a brain ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in FMA this is treated as part of the ependyma, but here we treat ependyma as a portion ## Synonyms - * ependyma of ventricular system of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242837] + * ependyma of ventricular system of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242837 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ependyma](../../UBERON/70/UBERON_0004670.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain ventricle](../../UBERON/86/UBERON_0004086.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005457.md b/md/UBERON/57/UBERON_0005457.md index f50320a06d..89b9725d8d 100644 --- a/md/UBERON/57/UBERON_0005457.md +++ b/md/UBERON/57/UBERON_0005457.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005457 * *Label* = left thymus lobe - * *Definition* = A thymus lobe that is in the left side of a thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A thymus lobe that is in the left side of a thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left lobe of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71195] - * left thymic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71195] + * left lobe of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71195 ] + * left thymic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71195 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [thymus](../../UBERON/70/UBERON_0002370.md) and [thymus lobe](../../UBERON/83/UBERON_0005483.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0005657.md b/md/UBERON/57/UBERON_0005657.md index 02938ef99d..fbcd40faa5 100644 --- a/md/UBERON/57/UBERON_0005657.md +++ b/md/UBERON/57/UBERON_0005657.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005657 * *Label* = crus commune epithelium - * *Definition* = An epithelium that is part of a crus commune. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a crus commune. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crus commune](../../UBERON/00/UBERON_0005600.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006057.md b/md/UBERON/57/UBERON_0006057.md index 80792f5989..99d063103d 100644 --- a/md/UBERON/57/UBERON_0006057.md +++ b/md/UBERON/57/UBERON_0006057.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006057 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/57/UBERON_0006257.md b/md/UBERON/57/UBERON_0006257.md index 76de7ee70d..2b3d360bff 100644 --- a/md/UBERON/57/UBERON_0006257.md +++ b/md/UBERON/57/UBERON_0006257.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006257 * *Label* = laryngotracheal groove - * *Definition* = a groove in the floor of the pharynx formed from the ventral diverticulum of endoderm that arises from the floor of the foregut caudal to the pharynx. This structure is the precursor for the larynx and trachea[WP,edited]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Laryngotracheal_groove[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://isc.temple.edu/marino/embryology/resp98/respdev.htm] + * *Definition* = a groove in the floor of the pharynx formed from the ventral diverticulum of endoderm that arises from the floor of the foregut caudal to the pharynx. This structure is the precursor for the larynx and trachea[WP,edited]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Laryngotracheal_groove, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://isc.temple.edu/marino/embryology/resp98/respdev.htm ] * *Comment* = Editor notes: Note we currently have pharynx as part of the upper respiratory tract - separate by development? ## Synonyms - * laryngo-tracheal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004073] - * sulcus laryngotrachealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Laryngotracheal_groove[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * laryngo-tracheal tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Laryngotracheal_groove] + * laryngo-tracheal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004073 ] + * sulcus laryngotrachealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Laryngotracheal_groove, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * laryngo-tracheal tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Laryngotracheal_groove ] * laryngotracheal endoderm ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:16739 * RETIRED_EHDAA2:0000909 * SCTID:361426003 - * UMLS:C1283960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngotracheal_Tube] + * UMLS:C1283960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngotracheal_Tube ] * VHOG:0001404 * Wikipedia:Laryngotracheal_groove * ncithesaurus:Laryngotracheal_Tube @@ -47,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lung development begins with the appearance of the laryngotracheal groove, which is a small diverticulum that arises from the floor of the primitive pharynx at E9 in mouse and 4 wk in human.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006457.md b/md/UBERON/57/UBERON_0006457.md index f5c0240fc3..b07eaed0cd 100644 --- a/md/UBERON/57/UBERON_0006457.md +++ b/md/UBERON/57/UBERON_0006457.md @@ -6,16 +6,16 @@ ## Synonyms - * T1 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1452] - * first thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1452] - * t1 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62421] + * T1 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1452 ] + * first thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1452 ] + * t1 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62421 ] ## Cross-references * FMA:62421 * NIF_GrossAnatomy:birnlex_1452 * SCTID:278762008 - * UMLS:C0457859 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1452] + * UMLS:C0457859 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1452 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006657.md b/md/UBERON/57/UBERON_0006657.md index dc0cc757a1..7e02abfdaf 100644 --- a/md/UBERON/57/UBERON_0006657.md +++ b/md/UBERON/57/UBERON_0006657.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006657 * *Label* = glenoid fossa - * *Definition* = Anatomical cavity for the proximal articular surface of the proximal limb or fin element with the scapulocoracoid or equivalent structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = Anatomical cavity for the proximal articular surface of the proximal limb or fin element with the scapulocoracoid or equivalent structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Taxon notes: The glenoid fossa can be associated with the metapterygium in sarcopterygians, or either the meso- or propterygium in basal gnathostomes such as Chondrichthyans[ad]. AO notes: FMA also has classes for the bony parts around the cavity - these may be more useful than the cavity term itself ## Synonyms - * cavitas glenoidalis scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23275[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavitus glenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23275] - * glenoid cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23275] - * glenoid cavity of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23275] - * cavitas glenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glenoid_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glenoid cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000749] + * cavitas glenoidalis scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23275, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavitus glenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23275 ] + * glenoid cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23275 ] + * glenoid cavity of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23275 ] + * cavitas glenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glenoid_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glenoid cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000749 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:25122 * FMA:23275 * SCTID:181914008 - * UMLS:C1261046 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glenoid_Fossa] + * UMLS:C1261046 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glenoid_Fossa ] * Wikipedia:Glenoid_cavity * http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png * ncithesaurus:Glenoid_Fossa @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of scapular area (AAO:0000935)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006757.md b/md/UBERON/57/UBERON_0006757.md index 212efe8263..463d37957a 100644 --- a/md/UBERON/57/UBERON_0006757.md +++ b/md/UBERON/57/UBERON_0006757.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006757 * *Label* = lateral lingual swelling - * *Definition* = During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lingual_swelling] + * *Definition* = During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lingual_swelling ] * *Comment* = Structure notes: paired ## Synonyms * lateral lingual prominence - * lateral swellings [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lingual_swelling] - * tuberculum laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lingual_swelling] - * tuberculum linguale laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_lingual_swelling[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral swellings [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lingual_swelling ] + * tuberculum laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lingual_swelling ] + * tuberculum linguale laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_lingual_swelling, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006857.md b/md/UBERON/57/UBERON_0006857.md index 6fb39afbfe..26d6dbbce5 100644 --- a/md/UBERON/57/UBERON_0006857.md +++ b/md/UBERON/57/UBERON_0006857.md @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0006957.md b/md/UBERON/57/UBERON_0006957.md index e21ea8e281..13808e62a2 100644 --- a/md/UBERON/57/UBERON_0006957.md +++ b/md/UBERON/57/UBERON_0006957.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006957 * *Label* = submandibular gland primordium epithelium - * *Definition* = An epithelium that is part of a submandibular gland primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a submandibular gland primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submandibular gland primordium](../../UBERON/98/UBERON_0006298.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0007157.md b/md/UBERON/57/UBERON_0007157.md index 5fca4320b0..4ecaf949c5 100644 --- a/md/UBERON/57/UBERON_0007157.md +++ b/md/UBERON/57/UBERON_0007157.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0007257.md b/md/UBERON/57/UBERON_0007257.md index e2b100133c..3b3c418900 100644 --- a/md/UBERON/57/UBERON_0007257.md +++ b/md/UBERON/57/UBERON_0007257.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007257 * *Label* = intervertebral disk of sacral vertebra - * *Definition* = An intervertebral disk that is part of a sacral region of vertebral column. A sacral intervertebral disk connects at least one sacral vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intervertebral disk that is part of a sacral region of vertebral column. A sacral intervertebral disk connects at least one sacral vertebra, either to another thoracic vertebra, or at one point on the vertebral colummn, to a sacral vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * intervertebral disc of sacral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19575] + * intervertebral disc of sacral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19575 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [intervertebral disk](../../UBERON/66/UBERON_0001066.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sacral region of vertebral column](../../UBERON/75/UBERON_0006075.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0007357.md b/md/UBERON/57/UBERON_0007357.md index ed3f168557..d0f703b1c9 100644 --- a/md/UBERON/57/UBERON_0007357.md +++ b/md/UBERON/57/UBERON_0007357.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007357 * *Label* = proventriculus - * *Definition* = The glandular or true stomach of a bird that is situated between the crop and gizzard. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001136[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proventriculus] + * *Definition* = The glandular or true stomach of a bird that is situated between the crop and gizzard. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001136, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proventriculus ] * *Comment* = Taxon notes: consider extending to crocodilians. EMAPA has proventricular region ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0007657.md b/md/UBERON/57/UBERON_0007657.md index f83ed2cb3e..752258cef7 100644 --- a/md/UBERON/57/UBERON_0007657.md +++ b/md/UBERON/57/UBERON_0007657.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007657 * *Label* = anular ligament of radius - * *Definition* = The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anular_ligament_of_radius] + * *Definition* = The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anular_ligament_of_radius ] ## Synonyms - * annular ligament of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38872] - * ligamentum anulare radii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38872[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orbicular ligament of radius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38872] - * anular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19322] + * annular ligament of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38872 ] + * ligamentum anulare radii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38872, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orbicular ligament of radius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38872 ] + * anular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19322 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0008257.md b/md/UBERON/57/UBERON_0008257.md index 5ad573feaa..6b0aa49402 100644 --- a/md/UBERON/57/UBERON_0008257.md +++ b/md/UBERON/57/UBERON_0008257.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008257 * *Label* = radial sesamoid - * *Definition* = In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0226313379] + * *Definition* = In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0226313379 ] ## Synonyms - * os sesamoideum radiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0226313379] + * os sesamoideum radiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0226313379 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0008457.md b/md/UBERON/57/UBERON_0008457.md index 3bd1ec65a9..4ed278e3c2 100644 --- a/md/UBERON/57/UBERON_0008457.md +++ b/md/UBERON/57/UBERON_0008457.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008457 * *Label* = superior articular process of sacral vertebra - * *Definition* = A superior articular process of vertebra that is part of a sacral vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A superior articular process of vertebra that is part of a sacral vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * articular process of sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16215] - * processus articularis superior (os sacrum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16215] - * processus articularis superior ossis sacri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior articular process of sacral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16215] - * superior articular process of sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16215] + * articular process of sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16215 ] + * processus articularis superior (os sacrum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16215 ] + * processus articularis superior ossis sacri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior articular process of sacral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16215 ] + * superior articular process of sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16215 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral vertebra](../../UBERON/94/UBERON_0001094.md) and [superior articular process of vertebra](../../UBERON/79/UBERON_0001079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0008857.md b/md/UBERON/57/UBERON_0008857.md index a137deedff..e703e53b5a 100644 --- a/md/UBERON/57/UBERON_0008857.md +++ b/md/UBERON/57/UBERON_0008857.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008857 * *Label* = stomach smooth muscle circular layer - * *Definition* = the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010780] + * *Definition* = the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010780 ] ## Synonyms - * circular layer of gastric muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14911] - * circular muscle layer of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14911] - * stratum circulare (tunica muscularis)(gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14911] + * circular layer of gastric muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14911 ] + * circular muscle layer of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14911 ] + * stratum circulare (tunica muscularis)(gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14911 ] * stratum circulare gastris ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0008957.md b/md/UBERON/57/UBERON_0008957.md index 0a01d47a5a..1037c0dd72 100644 --- a/md/UBERON/57/UBERON_0008957.md +++ b/md/UBERON/57/UBERON_0008957.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008957 * *Label* = sequestrum - * *Definition* = a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sequestrum] + * *Definition* = a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sequestrum ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0009057.md b/md/UBERON/57/UBERON_0009057.md index 32e88b4d41..e023043063 100644 --- a/md/UBERON/57/UBERON_0009057.md +++ b/md/UBERON/57/UBERON_0009057.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009057 * *Label* = one-pass circulatory system - * *Definition* = A closed circulatory system in which blood passes once through the heart to supply the body once. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035907] + * *Definition* = A closed circulatory system in which blood passes once through the heart to supply the body once. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035907 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0009557.md b/md/UBERON/57/UBERON_0009557.md index aca75157b6..82ccd15458 100644 --- a/md/UBERON/57/UBERON_0009557.md +++ b/md/UBERON/57/UBERON_0009557.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0009768 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009557 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/57/UBERON_0009657.md b/md/UBERON/57/UBERON_0009657.md index 4f316bca60..768bbbb40f 100644 --- a/md/UBERON/57/UBERON_0009657.md +++ b/md/UBERON/57/UBERON_0009657.md @@ -11,7 +11,7 @@ ## Cross-references * MA:0001987 - * UMLS:C1708633 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Labial_Artery] + * UMLS:C1708633 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Labial_Artery ] * ncithesaurus:Labial_Artery ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0009757.md b/md/UBERON/57/UBERON_0009757.md index b303a9b61b..496858d3ce 100644 --- a/md/UBERON/57/UBERON_0009757.md +++ b/md/UBERON/57/UBERON_0009757.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009757 * *Label* = ambergris - * *Definition* = a biliary secretion of the intestines of the sperm whale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ambergris] + * *Definition* = a biliary secretion of the intestines of the sperm whale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ambergris ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0009857.md b/md/UBERON/57/UBERON_0009857.md index e37661e380..76641df5a6 100644 --- a/md/UBERON/57/UBERON_0009857.md +++ b/md/UBERON/57/UBERON_0009857.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009857 * *Label* = cavum septum pellucidum - * *Definition* = Space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. In humans, present in 100% of fetuses, but over 85% of them fuse by 36 months after birth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003447[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cave_of_septum_pellucidum] + * *Definition* = Space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. In humans, present in 100% of fetuses, but over 85% of them fuse by 36 months after birth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003447, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cave_of_septum_pellucidum ] ## Synonyms - * cave of septum pellucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61874] - * cavum of septum pellucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61874] - * septum pellucidum cave [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61874] - * ventriculus septi pellucidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61874] - * cavum septi pellucidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cave_of_septum_pellucidum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavum septi pellucidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cave_of_septum_pellucidum] - * fifth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61874[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cave_of_septum_pellucidum] + * cave of septum pellucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61874 ] + * cavum of septum pellucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61874 ] + * septum pellucidum cave [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61874 ] + * ventriculus septi pellucidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61874 ] + * cavum septi pellucidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cave_of_septum_pellucidum ] + * cavum septi pellucidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cave_of_septum_pellucidum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fifth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61874, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cave_of_septum_pellucidum ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:61874 * NeuroNames:257 * SCTID:180933005 - * UMLS:C0228158 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fifth_Ventricle] + * UMLS:C0228158 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fifth_Ventricle ] * Wikipedia:Cave_of_septum_pellucidum * http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg * ncithesaurus:Fifth_Ventricle @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [septum pellucidum](../../UBERON/14/UBERON_0004714.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0009957.md b/md/UBERON/57/UBERON_0009957.md index f8c2ac4fa0..f6321502dd 100644 --- a/md/UBERON/57/UBERON_0009957.md +++ b/md/UBERON/57/UBERON_0009957.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010057.md b/md/UBERON/57/UBERON_0010057.md index c212d68bc3..8c4d7b2822 100644 --- a/md/UBERON/57/UBERON_0010057.md +++ b/md/UBERON/57/UBERON_0010057.md @@ -6,7 +6,7 @@ ## Synonyms - * hypobranchial eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17352[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hypobranchial eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17352, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010157.md b/md/UBERON/57/UBERON_0010157.md index 6f50479298..63e9979694 100644 --- a/md/UBERON/57/UBERON_0010157.md +++ b/md/UBERON/57/UBERON_0010157.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010157 * *Label* = sphenoparietal suture - * *Definition* = The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoparietal_suture] + * *Definition* = The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoparietal_suture ] ## Synonyms * spheno-parietal suture - * sphenoparietal suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52945] - * Sutura sphenoparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoparietal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sphenoparietal suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52945 ] + * Sutura sphenoparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoparietal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [sphenoid bone](../../UBERON/77/UBERON_0001677.md) and [connects](../../ts/core#connects.md) some [tetrapod parietal bone](../../UBERON/10/UBERON_0000210.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010257.md b/md/UBERON/57/UBERON_0010257.md index 002fcecfda..15e7d65e1b 100644 --- a/md/UBERON/57/UBERON_0010257.md +++ b/md/UBERON/57/UBERON_0010257.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010257 * *Label* = 6th arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 6th arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [6th arch mesenchyme](../../UBERON/31/UBERON_0010031.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010257 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010357.md b/md/UBERON/57/UBERON_0010357.md index 350e582dd6..e91455bf36 100644 --- a/md/UBERON/57/UBERON_0010357.md +++ b/md/UBERON/57/UBERON_0010357.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010357 * *Label* = secondary ossification center - * *Definition* = A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_center#Secondary] + * *Definition* = A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_center#Secondary ] ## Synonyms - * centrum ossificationis secundarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NominaAnatomica:NA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * secondary ossification centre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75448] - * secundarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * centrum ossificationis secundarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NominaAnatomica:NA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * secondary ossification centre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75448 ] + * secundarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010557.md b/md/UBERON/57/UBERON_0010557.md index a97dd083d1..8bc763a65c 100644 --- a/md/UBERON/57/UBERON_0010557.md +++ b/md/UBERON/57/UBERON_0010557.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010557 * *Label* = pedal digit 1 metatarsal cartilage element - * *Definition* = A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 1 metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe 1 metatarsal cartilage condensation - * foot digit 1 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 1 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1 mesenchyme](../../UBERON/62/UBERON_0010562.md) and [pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010557 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0010757.md b/md/UBERON/57/UBERON_0010757.md index 542d81661e..cc5cf0caee 100644 --- a/md/UBERON/57/UBERON_0010757.md +++ b/md/UBERON/57/UBERON_0010757.md @@ -7,14 +7,15 @@ ## Synonyms - * eighth rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:8120] + * costa VIII [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eighth rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:8120 ] ## Cross-references * FMA:8120 * MA:0001408 * SCTID:244663007 - * UMLS:C1709954 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rib_8] + * UMLS:C1709954 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rib_8 ] * ncithesaurus:Rib_8 ## Subsets @@ -34,8 +35,9 @@ ## Other Annotations * *[rib number](../../UBPROP/06/UBPROP_0000106.md)* = 8 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011157.md b/md/UBERON/57/UBERON_0011157.md index a53f34f379..0c6db50c21 100644 --- a/md/UBERON/57/UBERON_0011157.md +++ b/md/UBERON/57/UBERON_0011157.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011157 * *Label* = cuneiform cartilage - * *Definition* = The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneiform_cartilages] + * *Definition* = The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneiform_cartilages ] * *Comment* = AAO def: "Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages." ## Synonyms - * Wrisbergi cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000690] - * cartilage of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55111] - * cartilage of Wrisberg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55111] - * cartilagines cuneiformes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuneiform_cartilages[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilago apicalis intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000690] - * cartilago apicalis seu cartilago Santoriniana [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000690] + * Wrisbergi cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000690 ] + * cartilage of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55111 ] + * cartilage of Wrisberg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55111 ] + * cartilagines cuneiformes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuneiform_cartilages, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cartilago apicalis intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000690 ] + * cartilago apicalis seu cartilago Santoriniana [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000690 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011357.md b/md/UBERON/57/UBERON_0011357.md index a6c9237c9c..fae9c376dc 100644 --- a/md/UBERON/57/UBERON_0011357.md +++ b/md/UBERON/57/UBERON_0011357.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011357 * *Label* = Reissner's fiber - * *Definition* = An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reissner's_fiber] + * *Definition* = An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reissner's_fiber ] * *Comment* = Taxon notes: Reissner's fiber is present in the central canal of species in all chordate subphyla[Olsson R. (1993) Reissner's fiber mechanisms: some common denominators. In The Subcommissural Organ: An Ependymal Brain Gland ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7711 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011657.md b/md/UBERON/57/UBERON_0011657.md index ac0c3afc95..dbb6561a80 100644 --- a/md/UBERON/57/UBERON_0011657.md +++ b/md/UBERON/57/UBERON_0011657.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011657 * *Label* = dermal element of plastron - * *Definition* = Fused ventral dermal element constituting the plastron. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Fused ventral dermal element constituting the plastron. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * plastron element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * plastral plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * plastron element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * plastral plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011757.md b/md/UBERON/57/UBERON_0011757.md index 495613de27..43106431aa 100644 --- a/md/UBERON/57/UBERON_0011757.md +++ b/md/UBERON/57/UBERON_0011757.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011757 * *Label* = differentiated genital tubercle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primordial_phallus] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primordial_phallus ] ## Synonyms - * phallus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primordial_phallus] - * phallus primordialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primordial_phallus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primordial phallus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primordial_phallus] + * phallus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primordial_phallus ] + * phallus primordialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primordial_phallus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primordial phallus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primordial_phallus ] ## Cross-references - * UMLS:C1514448 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordial_Phallus] + * UMLS:C1514448 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordial_Phallus ] * Wikipedia:Primordial_phallus * ncithesaurus:Primordial_Phallus @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011857.md b/md/UBERON/57/UBERON_0011857.md index 766393b2e4..91c39159f4 100644 --- a/md/UBERON/57/UBERON_0011857.md +++ b/md/UBERON/57/UBERON_0011857.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011857 * *Label* = acinus of lacrimal gland - * *Definition* = An acinus that is part of a lacrimal gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a lacrimal gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lacrimal gland acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85250] + * lacrimal gland acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85250 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lacrimal gland](../../UBERON/17/UBERON_0001817.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0011957.md b/md/UBERON/57/UBERON_0011957.md index 0e1950731f..5c734913d6 100644 --- a/md/UBERON/57/UBERON_0011957.md +++ b/md/UBERON/57/UBERON_0011957.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011957 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0012357.md b/md/UBERON/57/UBERON_0012357.md index 78182887cd..b408b8784b 100644 --- a/md/UBERON/57/UBERON_0012357.md +++ b/md/UBERON/57/UBERON_0012357.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012357 * *Label* = digitopodium bone - * *Definition* = A bone that is part of a the digitopodium skeleton - i.e. the acropodial skeleton or the metapodial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a the digitopodium skeleton - i.e. the acropodial skeleton or the metapodial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digitopodium region](../../UBERON/40/UBERON_0012140.md) ## Other Logical Axioms @@ -30,8 +30,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012357 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0012457.md b/md/UBERON/57/UBERON_0012457.md index eb353e5c62..5a62d309c8 100644 --- a/md/UBERON/57/UBERON_0012457.md +++ b/md/UBERON/57/UBERON_0012457.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012457 * *Label* = Ruffini nerve ending - * *Definition* = The Ruffini ending or Ruffini corpuscle is a class of slowly adapting mechanoreceptor which in humans is thought to exist only in the glabrous dermis and subcutaneous tissue[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbous_corpuscle] + * *Definition* = The Ruffini ending or Ruffini corpuscle is a class of slowly adapting mechanoreceptor which in humans is thought to exist only in the glabrous dermis and subcutaneous tissue[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbous_corpuscle ] * *Comment* = AO notes: MP says subcutaneous tissue of digits; NCITA says hypodermis ## Synonyms - * Ruffini's corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000989] - * corpusculum sensorium fusiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bulbous corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * corpuscle of ruffini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini corpuscle end-organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini endings [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini%27s corpuscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini%27s end organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini%27s ending [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] - * ruffini%27s organs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ruffini_ending] + * Ruffini's corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000989 ] + * corpusculum sensorium fusiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bulbous corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * corpuscle of ruffini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini corpuscle end-organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini endings [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini%27s corpuscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini%27s end organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini%27s ending [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] + * ruffini%27s organs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ruffini_ending ] ## Cross-references * FMA:83602 * FMA:84004 * SCTID:53140000 - * UMLS:C0035943 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ruffinis_Corpuscle] + * UMLS:C0035943 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ruffinis_Corpuscle ] * Wikipedia:Bulbous_corpuscle * ncithesaurus:Ruffinis_Corpuscle @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012457 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0013157.md b/md/UBERON/57/UBERON_0013157.md index eb12741671..2a50be699c 100644 --- a/md/UBERON/57/UBERON_0013157.md +++ b/md/UBERON/57/UBERON_0013157.md @@ -6,8 +6,8 @@ ## Synonyms - * 1st arch maxillary-mandibular groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000046] - * ectoderm of maxillary-mandibular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16395] + * 1st arch maxillary-mandibular groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000046 ] + * ectoderm of maxillary-mandibular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16395 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013157 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0013657.md b/md/UBERON/57/UBERON_0013657.md index 557a626e4c..f3fbee3e37 100644 --- a/md/UBERON/57/UBERON_0013657.md +++ b/md/UBERON/57/UBERON_0013657.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013657 * *Label* = hump - * *Definition* = A fatty deposit found on the back of camels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0174480199] + * *Definition* = A fatty deposit found on the back of camels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0174480199 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013657 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0013757.md b/md/UBERON/57/UBERON_0013757.md index 47cfa9e874..1f4317d1b5 100644 --- a/md/UBERON/57/UBERON_0013757.md +++ b/md/UBERON/57/UBERON_0013757.md @@ -7,7 +7,7 @@ ## Synonyms * blood in capillary - * portion of blood in capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:263901] + * portion of blood in capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:263901 ] * portion of capillary blood ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood](../../UBERON/78/UBERON_0000178.md) and [part_of](../../BFO/50/BFO_0000050.md) some [capillary](../../UBERON/82/UBERON_0001982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0014457.md b/md/UBERON/57/UBERON_0014457.md index 8824452b8c..64f5ff4fbd 100644 --- a/md/UBERON/57/UBERON_0014457.md +++ b/md/UBERON/57/UBERON_0014457.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014457 * *Label* = obsolete adult eye primordium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0000240] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0000240 ] * *Comment* = obsolete as it groups developmentally very different structures ## Synonyms - * adult eye primordium early [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0000240] + * adult eye primordium early [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0000240 ] ## Cross-references @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:10005249 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0003071 * *[consider](../../er/oboInOwl#consider.md)* = XAO:0000227 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014457 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/57/UBERON_0014557.md b/md/UBERON/57/UBERON_0014557.md index ae33098793..3a0232c292 100644 --- a/md/UBERON/57/UBERON_0014557.md +++ b/md/UBERON/57/UBERON_0014557.md @@ -6,8 +6,8 @@ ## Synonyms - * CA1 part of stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4123[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA1 stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4123] + * CA1 part of stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4123, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA1 stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4123 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum lacunosum moleculare](../../UBERON/40/UBERON_0007640.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014557 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0014757.md b/md/UBERON/57/UBERON_0014757.md index c14af64bc8..dcbc1e0634 100644 --- a/md/UBERON/57/UBERON_0014757.md +++ b/md/UBERON/57/UBERON_0014757.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014757 * *Label* = hyperpallium apicale - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930 ] ## Synonyms - * HA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * HA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014757 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0014857.md b/md/UBERON/57/UBERON_0014857.md index 846f20c5da..30de3bbe69 100644 --- a/md/UBERON/57/UBERON_0014857.md +++ b/md/UBERON/57/UBERON_0014857.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014857 * *Label* = zoea stage - * *Definition* = A crustacean larval stage characterised by the use of the thoracic appendages for swimming. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Crustacean_larvae#Zoea] + * *Definition* = A crustacean larval stage characterised by the use of the thoracic appendages for swimming. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Crustacean_larvae#Zoea ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014857 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_0015057.md b/md/UBERON/57/UBERON_0015057.md index 44e73328d8..f9e1624670 100644 --- a/md/UBERON/57/UBERON_0015057.md +++ b/md/UBERON/57/UBERON_0015057.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015057 * *Label* = scapula endochondral element - * *Definition* = A scapula bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A scapula bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * scapula element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * scapula skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * scapula element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * scapula skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [scapula cartilage element](../../UBERON/90/UBERON_0006290.md)or[scapula pre-cartilage condensation](../../UBERON/91/UBERON_0006291.md)or[scapula](../../UBERON/49/UBERON_0006849.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015057 + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2000157.md b/md/UBERON/57/UBERON_2000157.md index 26dc492731..e315a4536a 100644 --- a/md/UBERON/57/UBERON_2000157.md +++ b/md/UBERON/57/UBERON_2000157.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000157 * *Label* = somite 30 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 30 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2000557.md b/md/UBERON/57/UBERON_2000557.md index 4a8f7b44c9..ad36901396 100644 --- a/md/UBERON/57/UBERON_2000557.md +++ b/md/UBERON/57/UBERON_2000557.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000557 * *Label* = preural 1 vertebra - * *Definition* = Last caudal vertebra identified as the point at which the caudal vessels bifurcate, leaving the protection of the haemal arches of the caudal vertebrae and running laterally to the hypurals. This vertebra bears, commonly, a well-developed haemal arch and its spine (parhypural). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Last caudal vertebra identified as the point at which the caudal vessels bifurcate, leaving the protection of the haemal arches of the caudal vertebrae and running laterally to the hypurals. This vertebra bears, commonly, a well-developed haemal arch and its spine (parhypural). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The haemal arch may be fused to the centrum or not. In contrast, the neural arch and spine may be well developed, or rudimentary or absent in different teleost subgroups. ## Synonyms - * penultimate vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000557] - * preural centrum 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000557] - * pu1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000557] - * second last vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000557] + * penultimate vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000557 ] + * preural centrum 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000557 ] + * pu1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000557 ] + * second last vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000557 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2000657.md b/md/UBERON/57/UBERON_2000657.md index 92cca47233..93d8bb6535 100644 --- a/md/UBERON/57/UBERON_2000657.md +++ b/md/UBERON/57/UBERON_2000657.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000657 * *Label* = entopterygoid - * *Definition* = Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms * endopterygoid bone - * mesopterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000657] + * mesopterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000657 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2000757.md b/md/UBERON/57/UBERON_2000757.md index bab3cca469..534aeb0f16 100644 --- a/md/UBERON/57/UBERON_2000757.md +++ b/md/UBERON/57/UBERON_2000757.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000757[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000757, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/57/UBERON_2000857.md b/md/UBERON/57/UBERON_2000857.md index 393383a16e..a879ab185e 100644 --- a/md/UBERON/57/UBERON_2000857.md +++ b/md/UBERON/57/UBERON_2000857.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000857 * *Label* = somite 4 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 4 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2000957.md b/md/UBERON/57/UBERON_2000957.md index cdf300f7ab..ff9009e2d0 100644 --- a/md/UBERON/57/UBERON_2000957.md +++ b/md/UBERON/57/UBERON_2000957.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000957 * *Label* = hypaxial region somite 19 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001157.md b/md/UBERON/57/UBERON_2001157.md index 7d434cff6d..c069239927 100644 --- a/md/UBERON/57/UBERON_2001157.md +++ b/md/UBERON/57/UBERON_2001157.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001157 * *Label* = posterior lateral line primordium - * *Definition* = A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * posterior lateral line primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001157[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * posterior lateral line primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001157, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001257.md b/md/UBERON/57/UBERON_2001257.md index 5ffa6ef100..12dc06e0c9 100644 --- a/md/UBERON/57/UBERON_2001257.md +++ b/md/UBERON/57/UBERON_2001257.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001257 * *Label* = medial floor plate - * *Definition* = The medial portion of the spinal cord floor plate, located adjacent to the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The medial portion of the spinal cord floor plate, located adjacent to the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001357.md b/md/UBERON/57/UBERON_2001357.md index 858735040c..5c3bb3597a 100644 --- a/md/UBERON/57/UBERON_2001357.md +++ b/md/UBERON/57/UBERON_2001357.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001457.md b/md/UBERON/57/UBERON_2001457.md index 8e28185799..b2097b9dc9 100644 --- a/md/UBERON/57/UBERON_2001457.md +++ b/md/UBERON/57/UBERON_2001457.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001457 * *Label* = postcranial axial cartilage - * *Definition* = Cartilage which is part of the axial skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cartilage which is part of the axial skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [postcranial axial skeleton](../../UBERON/90/UBERON_0002090.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001657.md b/md/UBERON/57/UBERON_2001657.md index 75d719b25e..3ec41e2956 100644 --- a/md/UBERON/57/UBERON_2001657.md +++ b/md/UBERON/57/UBERON_2001657.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001657 * *Label* = upper pharyngeal 5 tooth - * *Definition* = Tooth that is attached to the upper pharyngeal 5 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the upper pharyngeal 5 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001757.md b/md/UBERON/57/UBERON_2001757.md index cc8aa59b2d..faeba49026 100644 --- a/md/UBERON/57/UBERON_2001757.md +++ b/md/UBERON/57/UBERON_2001757.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001857.md b/md/UBERON/57/UBERON_2001857.md index 78974fab71..d837bd4340 100644 --- a/md/UBERON/57/UBERON_2001857.md +++ b/md/UBERON/57/UBERON_2001857.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001857 * *Label* = hyoidean artery - * *Definition* = An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2001957.md b/md/UBERON/57/UBERON_2001957.md index 0a6bcbff45..bca0e9137f 100644 --- a/md/UBERON/57/UBERON_2001957.md +++ b/md/UBERON/57/UBERON_2001957.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001957 * *Label* = epibranchial 2 bone proximal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:w] + * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:w ] ## Synonyms - * epibranchial 2 anterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001957] - * epibranchial 2 mesial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001957] + * epibranchial 2 anterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001957 ] + * epibranchial 2 mesial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001957 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2002057.md b/md/UBERON/57/UBERON_2002057.md index 381c63dd92..69b4d27105 100644 --- a/md/UBERON/57/UBERON_2002057.md +++ b/md/UBERON/57/UBERON_2002057.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002057 * *Label* = gill opening - * *Definition* = Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = In teleosts, there is typically a single gill opening posterior to the operculum. ## Synonyms - * branchial aperture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002057] - * branchial opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002057] - * gill aperture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002057] - * opercular opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002057] + * branchial aperture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002057 ] + * branchial opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002057 ] + * gill aperture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002057 ] + * opercular opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002057 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_2002257.md b/md/UBERON/57/UBERON_2002257.md index 387a53ce8d..c8a68d8c4a 100644 --- a/md/UBERON/57/UBERON_2002257.md +++ b/md/UBERON/57/UBERON_2002257.md @@ -6,7 +6,7 @@ ## Synonyms - * premaxilla alveolar process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002257] + * premaxilla alveolar process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002257 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3000057.md b/md/UBERON/57/UBERON_3000057.md index a54cb34fdb..8626ff8edb 100644 --- a/md/UBERON/57/UBERON_3000057.md +++ b/md/UBERON/57/UBERON_3000057.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3000657.md b/md/UBERON/57/UBERON_3000657.md index 5661db9ae0..2d1fa46c85 100644 --- a/md/UBERON/57/UBERON_3000657.md +++ b/md/UBERON/57/UBERON_3000657.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000657 * *Label* = dentigerous process - * *Definition* = Tooth-bearing process of the vomer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Tooth-bearing process of the vomer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * torus dentigerous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000657] + * torus dentigerous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000657 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3000757.md b/md/UBERON/57/UBERON_3000757.md index 4b8a2e3735..eca4e4f4c1 100644 --- a/md/UBERON/57/UBERON_3000757.md +++ b/md/UBERON/57/UBERON_3000757.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000757 * *Label* = zonal area - * *Definition* = All those parts of the pectoral girdle ventral and medial to the glenoid fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = All those parts of the pectoral girdle ventral and medial to the glenoid fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3000957.md b/md/UBERON/57/UBERON_3000957.md index ea7691a1fa..0f313ff713 100644 --- a/md/UBERON/57/UBERON_3000957.md +++ b/md/UBERON/57/UBERON_3000957.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000957 * *Label* = basihyal - * *Definition* = Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3010457.md b/md/UBERON/57/UBERON_3010457.md index ba027fd6bd..39595adf4b 100644 --- a/md/UBERON/57/UBERON_3010457.md +++ b/md/UBERON/57/UBERON_3010457.md @@ -6,8 +6,8 @@ ## Synonyms - * dorsal blastopore lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010457] - * organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010457] + * dorsal blastopore lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010457 ] + * organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010457 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3010557.md b/md/UBERON/57/UBERON_3010557.md index a6a4e3b625..16fd1d0b2a 100644 --- a/md/UBERON/57/UBERON_3010557.md +++ b/md/UBERON/57/UBERON_3010557.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3010657.md b/md/UBERON/57/UBERON_3010657.md index a786902ff2..e48317b83a 100644 --- a/md/UBERON/57/UBERON_3010657.md +++ b/md/UBERON/57/UBERON_3010657.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010657 * *Label* = subhyoideus - * *Definition* = Deep, visceral muscle associated with tongue movement. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Deep, visceral muscle associated with tongue movement. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_3010757.md b/md/UBERON/57/UBERON_3010757.md index c31055ea0b..c1c6b9b2e3 100644 --- a/md/UBERON/57/UBERON_3010757.md +++ b/md/UBERON/57/UBERON_3010757.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010757 * *Label* = ramus superficial ophthalmic - * *Definition* = Dorsal branch of ADLLN that innervates supraorbital line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dorsal branch of ADLLN that innervates supraorbital line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/57/UBERON_4200157.md b/md/UBERON/57/UBERON_4200157.md index 49920522af..a577e1efb9 100644 --- a/md/UBERON/57/UBERON_4200157.md +++ b/md/UBERON/57/UBERON_4200157.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0000058.md b/md/UBERON/58/UBERON_0000058.md index f246c2d74e..21e5b8f127 100644 --- a/md/UBERON/58/UBERON_0000058.md +++ b/md/UBERON/58/UBERON_0000058.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000058 * *Label* = duct - * *Definition* = A tubular structure that transports or secretes substances. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.siumed.edu/~dking2/intro/glands.htm#ducts] + * *Definition* = A tubular structure that transports or secretes substances. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.siumed.edu/~dking2/intro/glands.htm#ducts ] * *Comment* = Most ducts, but not all, are exocrine gland ducts. Some ontologies classify structures such as the oviduct here. ## Synonyms @@ -19,7 +19,7 @@ * FMA:30320 * SCTID:91726008 * TAO:0005171 - * UMLS:C0687028 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Duct] + * UMLS:C0687028 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Duct ] * Wikipedia:Duct_(anatomy) * XAO:0004000 * ZFA:0005171 @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA:0005171]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0000158.md b/md/UBERON/58/UBERON_0000158.md index bf30322346..c34b13d50b 100644 --- a/md/UBERON/58/UBERON_0000158.md +++ b/md/UBERON/58/UBERON_0000158.md @@ -6,7 +6,7 @@ ## Synonyms - * membranous organ component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82500] + * membranous organ component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82500 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0000358.md b/md/UBERON/58/UBERON_0000358.md index edb7a99742..e1d714ee30 100644 --- a/md/UBERON/58/UBERON_0000358.md +++ b/md/UBERON/58/UBERON_0000358.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000358 * *Label* = blastocyst - * *Definition* = The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001824[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastocyst] + * *Definition* = The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001824, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastocyst ] * *Comment* = Editor's note: Gilbert fig11.32 has blastocyst has giving rise to ICM and trophoblast (which in this source is a synonym for trophectoderm) ## Synonyms - * blastocystis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastocyst[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * blastula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83041] + * blastocystis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastocyst, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * blastula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83041 ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:1153 * MESH:A16.254.085 * SCTID:308837009 - * UMLS:C1281743 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blastocyst] + * UMLS:C1281743 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blastocyst ] * Wikipedia:Blastocyst * http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0000458.md b/md/UBERON/58/UBERON_0000458.md index b00eca2169..4e5e0b95c5 100644 --- a/md/UBERON/58/UBERON_0000458.md +++ b/md/UBERON/58/UBERON_0000458.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000458 * *Label* = endocervix - * *Definition* = 1. The mucous membrane lining the canal of the cervix uteri. 2. The region of the opening of the uterine cervix into the uterine cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003002] + * *Definition* = 1. The mucous membrane lining the canal of the cervix uteri. 2. The region of the opening of the uterine cervix into the uterine cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003002 ] ## Synonyms @@ -13,7 +13,7 @@ * BTO:0003002 * FMA:86485 * SCTID:264460007 - * UMLS:C0227837 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endocervix] + * UMLS:C0227837 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endocervix ] * ncithesaurus:Endocervix ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ part](../../UBERON/64/UBERON_0000064.md) and [proximalmost_part_of](../../BSPO/06/BSPO_0001106.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0000958.md b/md/UBERON/58/UBERON_0000958.md index 650730b625..2f5d6c462d 100644 --- a/md/UBERON/58/UBERON_0000958.md +++ b/md/UBERON/58/UBERON_0000958.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000958 * *Label* = medulla - * *Definition* = Middle part of an organ (as opposed to the cortex)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovary] + * *Definition* = Middle part of an organ (as opposed to the cortex)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovary ] * *Comment* = This class is used in a very general sense ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = medullary - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001058.md b/md/UBERON/58/UBERON_0001058.md index 77fc7fa750..2f8a47e540 100644 --- a/md/UBERON/58/UBERON_0001058.md +++ b/md/UBERON/58/UBERON_0001058.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001058 * *Label* = mushroom body - * *Definition* = Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.641[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mushroom_body[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = Prominent lobed neuropils found in annelids and all arthropods except crustaceans. They are thought to be involved in olfactory associative learning and memory[MESH] Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.641, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mushroom_body, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = Taxon notes: Also in annelids. "Comparison to the verte- brate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times" [PMID:20813265] ## Synonyms - * corpora pedunculata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005801] - * mushroom bodies [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpora pedunculata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005801 ] + * mushroom bodies [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -45,8 +45,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6340 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6656 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001158.md b/md/UBERON/58/UBERON_0001158.md index 236a819a08..3bf2ddda54 100644 --- a/md/UBERON/58/UBERON_0001158.md +++ b/md/UBERON/58/UBERON_0001158.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001158 * *Label* = descending colon - * *Definition* = The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_colon] + * *Definition* = The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_colon ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * colon descendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_colon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * colon descendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_colon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MIAA:0000313 * OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA * SCTID:362165006 - * UMLS:C0227389 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Descending_Colon] + * UMLS:C0227389 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Descending_Colon ] * Wikipedia:Descending_colon * galen:DescendingColon * http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001258.md b/md/UBERON/58/UBERON_0001258.md index 7147adafb2..2cdeb4d188 100644 --- a/md/UBERON/58/UBERON_0001258.md +++ b/md/UBERON/58/UBERON_0001258.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001258 * *Label* = neck of urinary bladder - * *Definition* = the constricted portion of the urinary bladder, formed by the meeting of its inferolateral surfaces proximal to the opening of the urethra[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_urinary_bladder] + * *Definition* = the constricted portion of the urinary bladder, formed by the meeting of its inferolateral surfaces proximal to the opening of the urethra[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_urinary_bladder ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * bladder neck - * cervix vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15912[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * collum vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15912[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cervix vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15912, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * collum vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15912, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * neck of bladder * urinary bladder neck * vesical neck - * cervix vesicae urinariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck_of_urinary_bladder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cervix vesicae urinariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck_of_urinary_bladder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15912 * MA:0002491 * SCTID:362227006 - * UMLS:C0227716 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Neck] + * UMLS:C0227716 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Neck ] * Wikipedia:Neck_of_urinary_bladder * galen:UrinaryBladderNeck * http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001358.md b/md/UBERON/58/UBERON_0001358.md index d08c35e497..2432d7eeb7 100644 --- a/md/UBERON/58/UBERON_0001358.md +++ b/md/UBERON/58/UBERON_0001358.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001358 * *Label* = perineal artery - * *Definition* = The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perini superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perini superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perini superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_artery] + * *Definition* = The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perini superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perini superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perini superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * superficial perineal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_artery] - * arteria perinei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superficial perineal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_artery ] + * arteria perinei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20836 * MA:0002017 * SCTID:244303001 - * UMLS:C0226394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perineal_Artery] + * UMLS:C0226394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perineal_Artery ] * Wikipedia:Perineal_artery * http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001458.md b/md/UBERON/58/UBERON_0001458.md index 6507139ec4..e7093b68e5 100644 --- a/md/UBERON/58/UBERON_0001458.md +++ b/md/UBERON/58/UBERON_0001458.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001458 * *Label* = skin of lip - * *Definition* = A zone of skin that is part of a lip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a lip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * lip skin - * lip zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lips [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * lip zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lips [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:24764 * MA:0001579 * SCTID:244092005 - * UMLS:C0222101 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Lip] + * UMLS:C0222101 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Lip ] * ncithesaurus:Skin_of_the_Lip ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lip](../../UBERON/33/UBERON_0001833.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001558.md b/md/UBERON/58/UBERON_0001558.md index 7bfde2d496..19b16d66cf 100644 --- a/md/UBERON/58/UBERON_0001558.md +++ b/md/UBERON/58/UBERON_0001558.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001558 * *Label* = lower respiratory tract - * *Definition* = The segment of respiratory tract from the trachea to the lungs[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lower_respiratory_tract] + * *Definition* = The segment of respiratory tract from the trachea to the lungs[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lower_respiratory_tract ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001658.md b/md/UBERON/58/UBERON_0001658.md index 0ef9e59164..1726891241 100644 --- a/md/UBERON/58/UBERON_0001658.md +++ b/md/UBERON/58/UBERON_0001658.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001758.md b/md/UBERON/58/UBERON_0001758.md index 1097acf263..01bcf514cd 100644 --- a/md/UBERON/58/UBERON_0001758.md +++ b/md/UBERON/58/UBERON_0001758.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001758 * *Label* = periodontium - * *Definition* = The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontium] + * *Definition* = The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontium ] * *Comment* = note FMA treats periodontium and periodontal ligament as the same ## Synonyms - * paradentium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.646] - * periodontal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56665[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * periodontal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002467] - * tooth supporting structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.646] + * paradentium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.646 ] + * periodontal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56665, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * periodontal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002467 ] + * tooth supporting structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.646 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:56665 * GAID:216 * MESH:A14.254.646 - * UMLS:C0031093 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Periodontium] + * UMLS:C0031093 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Periodontium ] * Wikipedia:Periodontium * http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg * ncithesaurus:Periodontium @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001858.md b/md/UBERON/58/UBERON_0001858.md index 5b431d7adc..88d02f2aab 100644 --- a/md/UBERON/58/UBERON_0001858.md +++ b/md/UBERON/58/UBERON_0001858.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001858 * *Label* = posterior semicircular duct - * *Definition* = The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semicircular_canal] + * *Definition* = The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semicircular_canal ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Vertebrata is characterized by three synapomorphies. (...) Vertebrates also have at least two vertical semicircular ducts (...). In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0001958.md b/md/UBERON/58/UBERON_0001958.md index a4767f969e..183bde271d 100644 --- a/md/UBERON/58/UBERON_0001958.md +++ b/md/UBERON/58/UBERON_0001958.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001958 * *Label* = epithelium of terminal bronchiole - * *Definition* = An epithelium that is part of a terminal bronchiole [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a terminal bronchiole [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bronchiolus terminalis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchiolus terminalis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of terminal bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bronchiolus terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal bronchiole epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchiolus terminalis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchiolus terminalis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of terminal bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bronchiolus terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal bronchiole epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * terminal bronchiole epithelium ## Cross-references * FMA:62794 * MA:0001774 - * UMLS:C1179400 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Terminal_Bronchiole_Epithelium] + * UMLS:C1179400 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Terminal_Bronchiole_Epithelium ] * ncithesaurus:Terminal_Bronchiole_Epithelium ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [terminal bronchiole](../../UBERON/87/UBERON_0002187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002058.md b/md/UBERON/58/UBERON_0002058.md index 82903baab0..c690bb86b9 100644 --- a/md/UBERON/58/UBERON_0002058.md +++ b/md/UBERON/58/UBERON_0002058.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002058 * *Label* = ciliary ganglion - * *Definition* = The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1P2 millimeters in diameter and contains approximately 2,500 neurons (adapted from Wikipedia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100304] + * *Definition* = The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1P2 millimeters in diameter and contains approximately 2,500 neurons (adapted from Wikipedia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100304 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * ganglion ciliare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion ciliare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 12 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, known as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted][Wikipedia:Ciliary_ganglion]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Little is known about the development of parasympathetic neurons apart from the ciliary ganglion in chicks. Although there are considerable gaps in our knowledge, some of the mechanisms controlling sympathetic and enteric neuron development appear to be conserved between mammals, avians and zebrafish.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002158.md b/md/UBERON/58/UBERON_0002158.md index 2011bf139f..481c237ec7 100644 --- a/md/UBERON/58/UBERON_0002158.md +++ b/md/UBERON/58/UBERON_0002158.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002158 * *Label* = principal inferior olivary nucleus - * *Definition* = The inferior olivary nucleus that consists of the major laminar structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body#Olivary_nuclei] + * *Definition* = The inferior olivary nucleus that consists of the major laminar structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body#Olivary_nuclei ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * chief inferior olivary nucleus - * convoluted olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081248] + * convoluted olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081248 ] * inferior olivary complex, principal olive * inferior olive principal nucleus * inferior olive, principal nucleus * main olivary nucleus - * nucleus olivaris principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72592[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus olivaris principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72592, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * principal nucleus of inferior olive * principal olivary nucleus - * principal olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081248] - * inferior olivary complex principal olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IOpr] + * principal olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081248 ] + * inferior olivary complex principal olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IOpr ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002258.md b/md/UBERON/58/UBERON_0002258.md index e451ac023a..79ba6bdca3 100644 --- a/md/UBERON/58/UBERON_0002258.md +++ b/md/UBERON/58/UBERON_0002258.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002258 * *Label* = dorsal funiculus - * *Definition* = The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_funiculus] + * *Definition* = The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_funiculus ] ## Synonyms * dorsal funiculus of spinal cord - * dorsal white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77461] - * funiculus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000501] - * funiculus posterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77461[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77461 ] + * funiculus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000501 ] + * funiculus posterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77461, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * posterior funiculus * posterior funiculus of spinal cord - * posterior white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77461] + * posterior white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77461 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002358.md b/md/UBERON/58/UBERON_0002358.md index d9c34e600d..c89f96a796 100644 --- a/md/UBERON/58/UBERON_0002358.md +++ b/md/UBERON/58/UBERON_0002358.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002358 * *Label* = peritoneum - * *Definition* = A serous membrane that lines the peritoneal cavity[VHOG,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001257] + * *Definition* = A serous membrane that lines the peritoneal cavity[VHOG,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001257 ] * *Comment* = TODO - in ZFA is_a epithelium ## Synonyms - * peritonaeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001257] + * peritonaeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001257 ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A01.047.025.600 * OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA * TAO:0005120 - * UMLS:C0031153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peritoneum] + * UMLS:C0031153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peritoneum ] * VHOG:0001257 * Wikipedia:Peritoneum * XAO:0000139 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Serous membrane that forms the lining of the abdominal cavity or the coelom. It covers most of the intra-abdominal organs, supports the abdominal organs, and serves as a conduit for their blood and lymph vessels and nerves. It is composed of a layer of mesothelium.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = peritoneal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002458.md b/md/UBERON/58/UBERON_0002458.md index c9c9002819..14f40acf25 100644 --- a/md/UBERON/58/UBERON_0002458.md +++ b/md/UBERON/58/UBERON_0002458.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002458 * *Label* = spinal artery - * *Definition* = Arteries that supply the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Arteries that supply the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * spinal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000682[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * spinal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000682, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002043 * SCTID:244228006 * TAO:0000682 - * UMLS:C0447043 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Artery] + * UMLS:C0447043 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Artery ] * Wikipedia:Spinal_artery * ZFA:0000682 * ncithesaurus:Spinal_Artery @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002558.md b/md/UBERON/58/UBERON_0002558.md index 6e9e24d6e4..435679dce3 100644 --- a/md/UBERON/58/UBERON_0002558.md +++ b/md/UBERON/58/UBERON_0002558.md @@ -6,7 +6,7 @@ ## Synonyms - * cavity of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12237] + * cavity of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12237 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002658.md b/md/UBERON/58/UBERON_0002658.md index 0b48b1a261..dc5550777d 100644 --- a/md/UBERON/58/UBERON_0002658.md +++ b/md/UBERON/58/UBERON_0002658.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002658 * *Label* = medial lemniscus of midbrain - * *Definition* = A medial lemniscus that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial lemniscus that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mlmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1296[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lemniscus medialis (mesencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:533[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial lemniscus of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:533] + * midbrain medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mlmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1296, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lemniscus medialis (mesencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:533, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial lemniscus of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:533 ] ## Cross-references * BAMS:mlmb * FMA:72461 * NIF_GrossAnatomy:birnlex_1296 - * NeuroNames:533 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1296] - * UMLS:C0175406 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1296] + * NeuroNames:533 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1296 ] + * UMLS:C0175406 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1296 ] ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial lemniscus](../../UBERON/02/UBERON_0003002.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002758.md b/md/UBERON/58/UBERON_0002758.md index f8c45db685..45d9e54fbe 100644 --- a/md/UBERON/58/UBERON_0002758.md +++ b/md/UBERON/58/UBERON_0002758.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002758 * *Label* = dorsal nucleus of medial geniculate body - * *Definition* = Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] + * *Definition* = Dorsal division of the medial geniculate nucleus, as first defined by Morest (1964) in the cat, but also described in the rat. It fills all but the medial edge of the posterior tip in cat, and joins the lateral thalamic nucleus anteriorly (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261345/?page=3) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] ## Synonyms - * dorsal nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62216] - * medial geniculate complex, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] - * medial geniculate nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] - * nucleus corporis geniculati medialis, pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] - * nucleus geniculatus medialis fibrosus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] - * nucleus geniculatus medialis pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1608] - * DMG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * MGD [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * dorsal medial geniculate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGD] - * dorsal nucleus of the medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:356] - * medial geniculate complex dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGd] - * medial geniculate nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGD] - * medial geniculate nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGd] - * nucleus dorsalis coporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002673] + * dorsal nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62216 ] + * medial geniculate complex, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] + * medial geniculate nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] + * nucleus corporis geniculati medialis, pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] + * nucleus geniculatus medialis fibrosus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] + * nucleus geniculatus medialis pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1608 ] + * DMG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * MGD [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * dorsal medial geniculate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGD ] + * dorsal nucleus of the medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:356 ] + * medial geniculate complex dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGd ] + * medial geniculate nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGD ] + * medial geniculate nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGd ] + * nucleus dorsalis coporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002673 ] ## Cross-references @@ -31,7 +31,7 @@ * BTO:0002673 * FMA:62216 * NIF_GrossAnatomy:birnlex_1608 - * NeuroNames:356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1608] + * NeuroNames:356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1608 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002858.md b/md/UBERON/58/UBERON_0002858.md index 65ecb20408..5dcda50bb2 100644 --- a/md/UBERON/58/UBERON_0002858.md +++ b/md/UBERON/58/UBERON_0002858.md @@ -6,15 +6,15 @@ ## Synonyms - * third lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6337] - * third lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6337] + * third lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6337 ] + * third lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6337 ] ## Cross-references * EMAPA:25166 * FMA:6337 * NIF_GrossAnatomy:birnlex_2625 - * UMLS:C0501715 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2625] + * UMLS:C0501715 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2625 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0002958.md b/md/UBERON/58/UBERON_0002958.md index 9614cde0d3..6bed5001ac 100644 --- a/md/UBERON/58/UBERON_0002958.md +++ b/md/UBERON/58/UBERON_0002958.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002958 * *Label* = medial lemniscus of pons - * *Definition* = A medial lemniscus that is part of a pons [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial lemniscus that is part of a pons [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medial lemniscus of pons of varolius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons of varolius medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lemniscus medial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_887] - * lemniscus medialis (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:610[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial lemniscus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:610] + * medial lemniscus of pons of varolius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons of varolius medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lemniscus medial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_887 ] + * lemniscus medialis (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:610, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial lemniscus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:610 ] ## Cross-references * BAMS:mlp * FMA:72503 * NIF_GrossAnatomy:birnlex_781 - * NeuroNames:610 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_781] - * UMLS:C0228439 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_781] + * NeuroNames:610 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_781 ] + * UMLS:C0228439 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_781 ] ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial lemniscus](../../UBERON/02/UBERON_0003002.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pons](../../UBERON/88/UBERON_0000988.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003058.md b/md/UBERON/58/UBERON_0003058.md index 6c38c6fcf0..de472a36fc 100644 --- a/md/UBERON/58/UBERON_0003058.md +++ b/md/UBERON/58/UBERON_0003058.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003058 * *Label* = hypochord - * *Definition* = The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000733[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0055016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10648245] + * *Definition* = The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000733, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0055016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10648245 ] * *Comment* = Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA] ## Synonyms - * subnotochordal rod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0055016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10648245] + * subnotochordal rod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0055016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10648245 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unsegmented ventral structure in the caudal region of anuran larvae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In other words, we identified variations in gene expression patterns that may contribute to a molecular basis of evolutionary variation of axial structures between Teleostei and Mammalia in the determination of body axis. As already mentioned, one such difference is illustrated by the hypochord present in lower vertebrates but absent in higher animals. Perhaps, Tbx-b and Tbx-c are involved in the mechanisms underlying the formation of this organ that were lost during later evolution leading to the disappearance of the hypochord itself, similarly to other organs, such as the lateral line.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003158.md b/md/UBERON/58/UBERON_0003158.md index d137d20aae..115ba8a074 100644 --- a/md/UBERON/58/UBERON_0003158.md +++ b/md/UBERON/58/UBERON_0003158.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004501 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000999 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003158 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/58/UBERON_0003258.md b/md/UBERON/58/UBERON_0003258.md index 077554cfdd..2cbec9c9bf 100644 --- a/md/UBERON/58/UBERON_0003258.md +++ b/md/UBERON/58/UBERON_0003258.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003258 * *Label* = endoderm of foregut - * *Definition* = An endoderm that is part of a foregut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a foregut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * foregut endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foregut endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003358.md b/md/UBERON/58/UBERON_0003358.md index abfb0bddb8..cb27a0e35a 100644 --- a/md/UBERON/58/UBERON_0003358.md +++ b/md/UBERON/58/UBERON_0003358.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003358 * *Label* = epithelium of soft palate - * *Definition* = An epithelium that is part of a soft palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a soft palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of soft palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * soft palate epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of soft palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * soft palate epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003458.md b/md/UBERON/58/UBERON_0003458.md index fa244319dd..faf9c51cd0 100644 --- a/md/UBERON/58/UBERON_0003458.md +++ b/md/UBERON/58/UBERON_0003458.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003458 * *Label* = neck bone - * *Definition* = A bone that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003558.md b/md/UBERON/58/UBERON_0003558.md index 5224abaaa2..1ab82f5272 100644 --- a/md/UBERON/58/UBERON_0003558.md +++ b/md/UBERON/58/UBERON_0003558.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003558 * *Label* = diencephalon arachnoid mater - * *Definition* = An arachnoid mater that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arachnoid mater of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arachnoid mater of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Arachnoid mater that is part of the diencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003658.md b/md/UBERON/58/UBERON_0003658.md index d218691cf7..15808f5b68 100644 --- a/md/UBERON/58/UBERON_0003658.md +++ b/md/UBERON/58/UBERON_0003658.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003658 * *Label* = hip muscle - * *Definition* = A muscle organ that is part of a hip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a hip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hip muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hip muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003858.md b/md/UBERON/58/UBERON_0003858.md index c8e3ed6242..db5cc9fb7b 100644 --- a/md/UBERON/58/UBERON_0003858.md +++ b/md/UBERON/58/UBERON_0003858.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003858 * *Label* = lower eyelid mesenchyme - * *Definition* = Mesenchyme that is part of a lower eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a lower eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inferior eyelid mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of inferior eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * inferior eyelid mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of inferior eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower eyelid](../../UBERON/13/UBERON_0001713.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0003958.md b/md/UBERON/58/UBERON_0003958.md index d8e9d23cd1..9f0de00075 100644 --- a/md/UBERON/58/UBERON_0003958.md +++ b/md/UBERON/58/UBERON_0003958.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003958 * *Label* = long bone epiphyseal ossification zone - * *Definition* = The layer of the epiphyseal plate where new bone matrix is deposited [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006399] + * *Definition* = The layer of the epiphyseal plate where new bone matrix is deposited [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006399 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004058.md b/md/UBERON/58/UBERON_0004058.md index 9e0fcec72e..6289ef2a41 100644 --- a/md/UBERON/58/UBERON_0004058.md +++ b/md/UBERON/58/UBERON_0004058.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004058 * *Label* = biliary ductule - * *Definition* = One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002840[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009494] + * *Definition* = One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002840, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009494 ] * *Comment* = ZFIN: Digestive system duct that collects bile from the canaliculus and transports bile through the liver -- (check if the same) // The smallest and the most peripheral branches of the biliary tree consist of a portal part (portal ductule) and an intralobular part (intralobular ductule) // ## Synonyms - * bile ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002840] - * biliary ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?ductuli+biliferi] - * ductuli biliferi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?ductuli+biliferi] - * bile capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002840] - * biliary ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002840] - * cholangiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002840] + * bile ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002840 ] + * biliary ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?ductuli+biliferi ] + * ductuli biliferi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?ductuli+biliferi ] + * bile capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002840 ] + * biliary ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002840 ] + * cholangiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002840 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004158.md b/md/UBERON/58/UBERON_0004158.md index 63131e1d85..63fbf70da3 100644 --- a/md/UBERON/58/UBERON_0004158.md +++ b/md/UBERON/58/UBERON_0004158.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004158 * *Label* = atrial septum secundum - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003290] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003290 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004258.md b/md/UBERON/58/UBERON_0004258.md index b740486f84..c818b07ef2 100644 --- a/md/UBERON/58/UBERON_0004258.md +++ b/md/UBERON/58/UBERON_0004258.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004258 * *Label* = back blood vessel - * *Definition* = A blood vessel that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004358.md b/md/UBERON/58/UBERON_0004358.md index c21a09f39f..74d6615114 100644 --- a/md/UBERON/58/UBERON_0004358.md +++ b/md/UBERON/58/UBERON_0004358.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004358 * *Label* = caput epididymis - * *Definition* = the head of the epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002660] + * *Definition* = the head of the epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002660 ] * *Comment* = Structure notes: The head of the epididymis receives spermatozoa via the efferent ducts of the mediastinum of the testis. It is characterized histologically by a thin myoepithelium. The concentration of the sperm here is dilute[WP] ## Synonyms - * epididymal head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18259] - * epididymis head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18259] - * epidymis head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18259] - * head of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18259] + * epididymal head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18259 ] + * epididymis head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18259 ] + * epidymis head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18259 ] + * head of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18259 ] * head of epidymis - * caput [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002660] - * caput epididymidis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000336] + * caput [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002660 ] + * caput epididymidis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000336 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:18259 * MA:0002762 * SCTID:362282002 - * UMLS:C0228023 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Epididymis] + * UMLS:C0228023 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Epididymis ] * ncithesaurus:Head_of_the_Epididymis ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004458.md b/md/UBERON/58/UBERON_0004458.md index dd0f061886..00d7ee72f3 100644 --- a/md/UBERON/58/UBERON_0004458.md +++ b/md/UBERON/58/UBERON_0004458.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [cavity lining](../../UBERON/57/UBERON_0004457.md)or[coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004658.md b/md/UBERON/58/UBERON_0004658.md index 7be87b6d65..74f53ca12e 100644 --- a/md/UBERON/58/UBERON_0004658.md +++ b/md/UBERON/58/UBERON_0004658.md @@ -6,8 +6,8 @@ ## Synonyms - * Mandibular head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59331] - * head of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59331] + * Mandibular head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59331 ] + * head of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59331 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004758.md b/md/UBERON/58/UBERON_0004758.md index cff7edc030..407d83fc45 100644 --- a/md/UBERON/58/UBERON_0004758.md +++ b/md/UBERON/58/UBERON_0004758.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004758 * *Label* = salt gland - * *Definition* = an organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles. In sharks, salt glands are found in the rectum, but in birds and reptiles, they are found in or on the skull, in the area of the eyes, nostrils or mouth. In crocodiles, the salt is excreted through the tongue. Such glands work by active transport via sodium-potassium pump that moves salt from the blood into the gland, where it can be excreted as a concentrated solution. Salt glands function to keep salt balance, and allow marine vertebrates to drink seawater[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Salt_gland] + * *Definition* = an organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles. In sharks, salt glands are found in the rectum, but in birds and reptiles, they are found in or on the skull, in the area of the eyes, nostrils or mouth. In crocodiles, the salt is excreted through the tongue. Such glands work by active transport via sodium-potassium pump that moves salt from the blood into the gland, where it can be excreted as a concentrated solution. Salt glands function to keep salt balance, and allow marine vertebrates to drink seawater[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Salt_gland ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sodium ion homeostasis](../../GO/78/GO_0055078.md) and [gland](../../UBERON/30/UBERON_0002530.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0004858.md b/md/UBERON/58/UBERON_0004858.md index 7ec6a5f10e..24723b2fc4 100644 --- a/md/UBERON/58/UBERON_0004858.md +++ b/md/UBERON/58/UBERON_0004858.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005058.md b/md/UBERON/58/UBERON_0005058.md index a10a928d3e..d1851fcfcc 100644 --- a/md/UBERON/58/UBERON_0005058.md +++ b/md/UBERON/58/UBERON_0005058.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005058 * *Label* = hemolymphoid system gland - * *Definition* = A gland that is part of a hemolymphoid system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a hemolymphoid system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hemopoietic or lymphoid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm] - * hemopoietic or lymphoid organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048534] + * hemopoietic or lymphoid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm ] + * hemopoietic or lymphoid organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048534 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hemolymphoid system](../../UBERON/93/UBERON_0002193.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005158.md b/md/UBERON/58/UBERON_0005158.md index 955b599517..7a3fdd763a 100644 --- a/md/UBERON/58/UBERON_0005158.md +++ b/md/UBERON/58/UBERON_0005158.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005158 * *Label* = parenchyma of central nervous system - * *Definition* = A parenchyma that is part of a central nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parenchyma that is part of a central nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * CNS parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * central nervous system parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parenchyma of CNS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * CNS parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * central nervous system parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parenchyma of CNS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * parenchyma of central nervous system ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central nervous system](../../UBERON/17/UBERON_0001017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005258.md b/md/UBERON/58/UBERON_0005258.md index d79b310dbe..ca5b0e8226 100644 --- a/md/UBERON/58/UBERON_0005258.md +++ b/md/UBERON/58/UBERON_0005258.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005258 * *Label* = upper arm mesenchyme - * *Definition* = Mesenchyme that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005358.md b/md/UBERON/58/UBERON_0005358.md index 2f694edcd8..c3434008a0 100644 --- a/md/UBERON/58/UBERON_0005358.md +++ b/md/UBERON/58/UBERON_0005358.md @@ -6,7 +6,7 @@ ## Synonyms - * region of wall of ventricular system of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242770] + * region of wall of ventricular system of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242770 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005458.md b/md/UBERON/58/UBERON_0005458.md index 71717763ea..7f91e11114 100644 --- a/md/UBERON/58/UBERON_0005458.md +++ b/md/UBERON/58/UBERON_0005458.md @@ -6,7 +6,7 @@ ## Synonyms - * embryonic left umbilical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000522] + * embryonic left umbilical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000522 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0005658.md b/md/UBERON/58/UBERON_0005658.md index bbd5fa2278..a88f2a716f 100644 --- a/md/UBERON/58/UBERON_0005658.md +++ b/md/UBERON/58/UBERON_0005658.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005658 * *Label* = secondary palatal shelf epithelium - * *Definition* = An epithelium that is part of a secondary palatal shelf. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a secondary palatal shelf. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * palatal shelf epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001040] + * palatal shelf epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001040 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary palatal shelf](../../UBERON/19/UBERON_0005619.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006058.md b/md/UBERON/58/UBERON_0006058.md index 5e82b2efb4..7dcac6744a 100644 --- a/md/UBERON/58/UBERON_0006058.md +++ b/md/UBERON/58/UBERON_0006058.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006058 * *Label* = multi-limb segment region - * *Definition* = A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006358.md b/md/UBERON/58/UBERON_0006358.md index af0c9c1451..ad48ca9e4d 100644 --- a/md/UBERON/58/UBERON_0006358.md +++ b/md/UBERON/58/UBERON_0006358.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006458.md b/md/UBERON/58/UBERON_0006458.md index 4828096341..becb26c985 100644 --- a/md/UBERON/58/UBERON_0006458.md +++ b/md/UBERON/58/UBERON_0006458.md @@ -6,16 +6,16 @@ ## Synonyms - * T2 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1454] - * second thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1454] - * t2 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62422] + * T2 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1454 ] + * second thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1454 ] + * t2 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62422 ] ## Cross-references * FMA:62422 * NIF_GrossAnatomy:birnlex_1454 * SCTID:278763003 - * UMLS:C0457860 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1454] + * UMLS:C0457860 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1454 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006558.md b/md/UBERON/58/UBERON_0006558.md index 493eed6f30..d75fce7957 100644 --- a/md/UBERON/58/UBERON_0006558.md +++ b/md/UBERON/58/UBERON_0006558.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006558 * *Label* = lymphatic part of lymphoid system - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphatic_system] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphatic_system ] * *Comment* = AO notes: in FMA this is part of the cardiovascular system, but here we treat the CV system as a separate component of the circulatory system from the lymphatic system ## Synonyms - * lymphatic system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7162[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002435] - * lymphatic tree system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7162] - * lymporeticular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001761] + * lymphatic system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7162, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002435 ] + * lymphatic tree system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7162 ] + * lymporeticular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001761 ] ## Cross-references @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = lymporeticular * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006658.md b/md/UBERON/58/UBERON_0006658.md index d6da1b0fc7..b9e40d8b5e 100644 --- a/md/UBERON/58/UBERON_0006658.md +++ b/md/UBERON/58/UBERON_0006658.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006658 * *Label* = interphalangeal joint - * *Definition* = A joint that connects one phalanx to another along a proximodistal axis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A joint that connects one phalanx to another along a proximodistal axis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * inter-phalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42765] + * inter-phalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42765 ] * inter-phalanx joint ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hinge joints between the phalanges of the hand or foot[ncithesaurus:Interphalangeal_Joint]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006858.md b/md/UBERON/58/UBERON_0006858.md index 17302ded98..d4fb5a0a39 100644 --- a/md/UBERON/58/UBERON_0006858.md +++ b/md/UBERON/58/UBERON_0006858.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006858 * *Label* = adrenal/interrenal gland - * *Definition* = This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030325] + * *Definition* = This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030325 ] * *Comment* = Editor notes: keep this grouping class so long as it is required for GO ## Synonyms - * adrenal gland - interrenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001141] + * adrenal gland - interrenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001141 ] * adrenal gland/interrenal tissue - * adrenal - interrenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001141] - * suprarenal gland - interrenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001141] + * adrenal - interrenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001141 ] + * suprarenal gland - interrenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001141 ] ## Cross-references @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues, but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0006958.md b/md/UBERON/58/UBERON_0006958.md index 7ae4565bbd..f38e8488ec 100644 --- a/md/UBERON/58/UBERON_0006958.md +++ b/md/UBERON/58/UBERON_0006958.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006958 * *Label* = great vein of heart - * *Definition* = The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_cardiac_vein] + * *Definition* = The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_cardiac_vein ] ## Synonyms - * great cardiac vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4707] - * vena cardiaca magna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_cardiac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena cordis magna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_cardiac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * great cardiac vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4707 ] + * vena cardiaca magna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_cardiac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena cordis magna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_cardiac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:4707 * MA:0002131 * SCTID:277728005 - * UMLS:C0226659 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Great_Cardiac_Vein] + * UMLS:C0226659 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Great_Cardiac_Vein ] * Wikipedia:Great_cardiac_vein * http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png * ncithesaurus:Great_Cardiac_Vein @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0007158.md b/md/UBERON/58/UBERON_0007158.md index fec73a3d3e..f7bc31e4b5 100644 --- a/md/UBERON/58/UBERON_0007158.md +++ b/md/UBERON/58/UBERON_0007158.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007158 * *Label* = lumen of anal canal - * *Definition* = An anatomical cavity that surrounded_by a anal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a anal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anal canal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17357] + * anal canal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17357 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [anal canal](../../UBERON/59/UBERON_0000159.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0007358.md b/md/UBERON/58/UBERON_0007358.md index 654e88c9e0..59cecdab5d 100644 --- a/md/UBERON/58/UBERON_0007358.md +++ b/md/UBERON/58/UBERON_0007358.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007358 * *Label* = abomasum - * *Definition* = The fourth stomach of ruminating animals. It is also called the 'true' stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.869.106[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abomasum] + * *Definition* = The fourth stomach of ruminating animals. It is also called the 'true' stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.869.106, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abomasum ] ## Synonyms - * fourth stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000024] - * maw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abomasum] - * read [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abomasum] - * rennet-bag [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abomasum] + * fourth stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000024 ] + * maw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abomasum ] + * read [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abomasum ] + * rennet-bag [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abomasum ] * ruminant true stomach ## Cross-references @@ -19,7 +19,7 @@ * GAID:1241 * MESH:A13.869.106 * SCTID:410028001 - * UMLS:C0000780 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abomasum] + * UMLS:C0000780 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abomasum ] * Wikipedia:Abomasum * http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png * ncithesaurus:Abomasum @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0007958.md b/md/UBERON/58/UBERON_0007958.md index 3e7b52f70c..cc9a60d46f 100644 --- a/md/UBERON/58/UBERON_0007958.md +++ b/md/UBERON/58/UBERON_0007958.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007958 * *Label* = central carpal bone - * *Definition* = A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=63518] + * *Definition* = A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=63518 ] ## Synonyms * central carpals - * central bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=63518] - * centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001344] + * central bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=63518 ] + * centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001344 ] * os centrale - * os carpi centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://epub.ub.uni-muenchen.de/8251/1/8251.pdf] + * os carpi centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://epub.ub.uni-muenchen.de/8251/1/8251.pdf ] * os centrale carpi ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0008258.md b/md/UBERON/58/UBERON_0008258.md index 94957bdd52..19c047230a 100644 --- a/md/UBERON/58/UBERON_0008258.md +++ b/md/UBERON/58/UBERON_0008258.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0008858.md b/md/UBERON/58/UBERON_0008858.md index 3f1dc441a1..85ad52c66d 100644 --- a/md/UBERON/58/UBERON_0008858.md +++ b/md/UBERON/58/UBERON_0008858.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008858 * *Label* = pyloric canal - * *Definition* = the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010791[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_canal] + * *Definition* = the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010791, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_canal ] ## Synonyms - * canalis pyloricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_canal] - * canalis pyloricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis pyloricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_canal ] + * canalis pyloricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0008958.md b/md/UBERON/58/UBERON_0008958.md index 80762c71f4..809a02af3d 100644 --- a/md/UBERON/58/UBERON_0008958.md +++ b/md/UBERON/58/UBERON_0008958.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009058.md b/md/UBERON/58/UBERON_0009058.md index 9dbd14f9b2..78cca7931f 100644 --- a/md/UBERON/58/UBERON_0009058.md +++ b/md/UBERON/58/UBERON_0009058.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009058 * *Label* = faveolus - * *Definition* = A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12869615] + * *Definition* = A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12869615 ] * *Comment* = Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] ## Synonyms * lung faveolus - * edicula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12625309[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * faveoli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * edicula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12625309, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * faveoli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009558.md b/md/UBERON/58/UBERON_0009558.md index b886a4985b..c36d009663 100644 --- a/md/UBERON/58/UBERON_0009558.md +++ b/md/UBERON/58/UBERON_0009558.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009558 * *Label* = pastern bone - * *Definition* = A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pastern] + * *Definition* = A bone that is part of the pastern region of a horse limb. i.e. proximal or middle (P1 or P2) phalanges in digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pastern ] * *Comment* = In future this may be merged into a more species-neutral class ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pastern region of limb](../../UBERON/63/UBERON_0009563.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009658.md b/md/UBERON/58/UBERON_0009658.md index b4e694e166..488b338119 100644 --- a/md/UBERON/58/UBERON_0009658.md +++ b/md/UBERON/58/UBERON_0009658.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009658 * *Label* = pancreaticoduodenal artery - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreaticoduodenal_artery] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreaticoduodenal_artery ] ## Synonyms - * arteriae pancreaticoduodenales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pancreatico-duodenal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002013] + * arteriae pancreaticoduodenales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pancreatico-duodenal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002013 ] ## Cross-references * MA:0002013 - * UMLS:C1709455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatico-Duodenal_Artery] + * UMLS:C1709455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatico-Duodenal_Artery ] * Wikipedia:Pancreaticoduodenal_artery * ncithesaurus:Pancreatico-Duodenal_Artery @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009758.md b/md/UBERON/58/UBERON_0009758.md index 4a9e0b97a4..c8c8d14934 100644 --- a/md/UBERON/58/UBERON_0009758.md +++ b/md/UBERON/58/UBERON_0009758.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009758 * *Label* = abdominal ganglion - * *Definition* = A ganglion that is part of a abdominal segment of trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A ganglion that is part of a abdominal segment of trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ganglion](../../UBERON/45/UBERON_0000045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009858.md b/md/UBERON/58/UBERON_0009858.md index 96386e63a7..8bee6e7f99 100644 --- a/md/UBERON/58/UBERON_0009858.md +++ b/md/UBERON/58/UBERON_0009858.md @@ -6,11 +6,11 @@ ## Synonyms - * capsular layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234354] + * capsular layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234354 ] * external layer of periosteum * external periosteum - * fibrous layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234354] - * outer fibrous layer of periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:234354] + * fibrous layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234354 ] + * outer fibrous layer of periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:234354 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0009958.md b/md/UBERON/58/UBERON_0009958.md index f0703e6b10..4f4c6a9a0b 100644 --- a/md/UBERON/58/UBERON_0009958.md +++ b/md/UBERON/58/UBERON_0009958.md @@ -6,10 +6,10 @@ ## Synonyms - * bladder cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15924] - * cavity of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15924] - * lumen of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15924] - * urinary bladder lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15924] + * bladder cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15924 ] + * cavity of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15924 ] + * lumen of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15924 ] + * urinary bladder lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15924 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010158.md b/md/UBERON/58/UBERON_0010158.md index 88c5f51fac..2a5d2774cc 100644 --- a/md/UBERON/58/UBERON_0010158.md +++ b/md/UBERON/58/UBERON_0010158.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010158 * *Label* = sphenozygomatic suture - * *Definition* = The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenozygomatic_suture] + * *Definition* = The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenozygomatic_suture ] ## Synonyms - * sphenozygomatica suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52956] - * sutura sphenozygomatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenozygomatic_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sphenozygomatica suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52956 ] + * sutura sphenozygomatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenozygomatic_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [jugal bone](../../UBERON/83/UBERON_0001683.md) and [connects](../../ts/core#connects.md) some [sphenoid bone](../../UBERON/77/UBERON_0001677.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010258.md b/md/UBERON/58/UBERON_0010258.md index abe35171bf..2563621b2c 100644 --- a/md/UBERON/58/UBERON_0010258.md +++ b/md/UBERON/58/UBERON_0010258.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010258 * *Label* = mesenchyme from rhombencephalic neural crest - * *Definition* = Mesenchyme that develops_from a rhombencephalon neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a rhombencephalon neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [rhombencephalon neural crest](../../UBERON/52/UBERON_0003852.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010258 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010358.md b/md/UBERON/58/UBERON_0010358.md index f4fd53ab28..665fea634f 100644 --- a/md/UBERON/58/UBERON_0010358.md +++ b/md/UBERON/58/UBERON_0010358.md @@ -7,10 +7,10 @@ ## Synonyms - * arch of vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11946] - * arcus vertebrae (vertebralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11946] - * vertebra arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001453] - * vertebral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11946] + * arch of vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11946 ] + * arcus vertebrae (vertebralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11946 ] + * vertebra arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001453 ] + * vertebral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11946 ] ## Cross-references @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) certain common components [of vertebral structure] are found in nearly all vertebrate. A representative vertebra has a vertebral arch or neural arch, which extends dorsally around the spinal cord.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010558.md b/md/UBERON/58/UBERON_0010558.md index 360a88408c..846b9e7dd6 100644 --- a/md/UBERON/58/UBERON_0010558.md +++ b/md/UBERON/58/UBERON_0010558.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010558 * *Label* = pedal digit 2 metatarsal cartilage element - * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 2 metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe 2 metatarsal cartilage element - * foot digit 2 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 2 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2 mesenchyme](../../UBERON/96/UBERON_0005696.md) and [pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010758.md b/md/UBERON/58/UBERON_0010758.md index f821eab2f4..c2df257795 100644 --- a/md/UBERON/58/UBERON_0010758.md +++ b/md/UBERON/58/UBERON_0010758.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010758 * *Label* = subdivision of organism along appendicular axis - * *Definition* = A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A major subdivision of an organism that divides an organism along an axis perpedicular to the main body anterior-posterior axis. In vertebrates, this is typically a fin or limb segment. In insects, this includes segments of appendages such as antennae, as well as segments of the insect leg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * appendage segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00007018] + * appendage segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00007018 ] * appendicular segment ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010858.md b/md/UBERON/58/UBERON_0010858.md index 3f876ee3f4..879d7ee7bd 100644 --- a/md/UBERON/58/UBERON_0010858.md +++ b/md/UBERON/58/UBERON_0010858.md @@ -24,11 +24,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0010958.md b/md/UBERON/58/UBERON_0010958.md index 287be77395..51095a3d8b 100644 --- a/md/UBERON/58/UBERON_0010958.md +++ b/md/UBERON/58/UBERON_0010958.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010958 * *Label* = arytenoid muscle - * *Definition* = A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle] + * *Definition* = A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle ] * *Comment* = todo - check child relationships ## Synonyms - * Aryt?noideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aryepiglotticus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle] - * arytaenoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle] - * arytaenoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle] + * Aryt?noideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aryepiglotticus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle ] + * arytaenoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle ] + * arytaenoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle ] ## Cross-references - * UMLS:C1510945 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arytenoid_Muscle] + * UMLS:C1510945 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arytenoid_Muscle ] * Wikipedia:Arytenoid_muscle * http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png * ncithesaurus:Arytenoid_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0011158.md b/md/UBERON/58/UBERON_0011158.md index fc51e7dcfc..6f5744a749 100644 --- a/md/UBERON/58/UBERON_0011158.md +++ b/md/UBERON/58/UBERON_0011158.md @@ -7,8 +7,8 @@ ## Synonyms - * skull subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54964] - * subdivision of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54964] + * skull subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54964 ] + * subdivision of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54964 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0011358.md b/md/UBERON/58/UBERON_0011358.md index 70f2049861..5d24462d54 100644 --- a/md/UBERON/58/UBERON_0011358.md +++ b/md/UBERON/58/UBERON_0011358.md @@ -34,8 +34,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7737 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0011658.md b/md/UBERON/58/UBERON_0011658.md index 52afc7225c..f4a355c2f1 100644 --- a/md/UBERON/58/UBERON_0011658.md +++ b/md/UBERON/58/UBERON_0011658.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011658 * *Label* = epiplastron - * *Definition* = Paired dermal bone that is part of the anterior region of the plastron. The epiplastron is found only in turtles. [PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = Paired dermal bone that is part of the anterior region of the plastron. The epiplastron is found only in turtles. [PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] * *Comment* = Derived ancestrally from the clavicle. ## Synonyms - * clavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * clavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0011858.md b/md/UBERON/58/UBERON_0011858.md index 0a9d8d3fad..7a56f78279 100644 --- a/md/UBERON/58/UBERON_0011858.md +++ b/md/UBERON/58/UBERON_0011858.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011858 * *Label* = acinus of exocrine gland - * *Definition* = An acinus that is part of a exocrine gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An acinus that is part of a exocrine gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [exocrine gland](../../UBERON/65/UBERON_0002365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0011958.md b/md/UBERON/58/UBERON_0011958.md index 888f89e8e5..41ff2e9836 100644 --- a/md/UBERON/58/UBERON_0011958.md +++ b/md/UBERON/58/UBERON_0011958.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011958 * *Label* = acetabular labrum - * *Definition* = A ring of cartilage that surrounds the acetabulum[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_labrum] + * *Definition* = A ring of cartilage that surrounds the acetabulum[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_labrum ] * *Comment* = Function notes: Its function is to deepen the acetabulum, making it more difficult for the head of the femur to slip out of place (sublux). Structure notes: some sources treat this as fibrocartilage ## Synonyms - * labrum acetabuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_labrum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * labrum of acetabulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43521] + * labrum acetabuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_labrum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * labrum of acetabulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43521 ] * acetabular lip - * acetabular rim [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000864[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * cotyloid ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_labrum] - * glenoidal labrum of hip joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabular_labrum] + * acetabular rim [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000864, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * cotyloid ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_labrum ] + * glenoidal labrum of hip joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabular_labrum ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilaginous ring that forms the entire acetabular margin[AAO:0000864]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011958 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0012358.md b/md/UBERON/58/UBERON_0012358.md index 9a94d44f16..7bf76c6b03 100644 --- a/md/UBERON/58/UBERON_0012358.md +++ b/md/UBERON/58/UBERON_0012358.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012358 * *Label* = manual digitopodium bone - * *Definition* = A bone that is part of a the manual digitopodium skeleton - i.e. the fingers or the metacarpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a the manual digitopodium skeleton - i.e. the fingers or the metacarpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digitopodium bone](../../UBERON/57/UBERON_0012357.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012358 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0012458.md b/md/UBERON/58/UBERON_0012458.md index 94fa064be4..8f7268eb88 100644 --- a/md/UBERON/58/UBERON_0012458.md +++ b/md/UBERON/58/UBERON_0012458.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012458 * *Label* = antler velvet - * *Definition* = highly vascular skin called velvet that covers the antler whilst it grows, supplying oxygen and nutrients to the growing bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Velvet_(antler_covering)] + * *Definition* = highly vascular skin called velvet that covers the antler whilst it grows, supplying oxygen and nutrients to the growing bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Velvet_(antler_covering) ] ## Synonyms - * velvet of antler [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SCTID:47282002] + * velvet of antler [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SCTID:47282002 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0013158.md b/md/UBERON/58/UBERON_0013158.md index 1f8917206a..d0155eca33 100644 --- a/md/UBERON/58/UBERON_0013158.md +++ b/md/UBERON/58/UBERON_0013158.md @@ -6,7 +6,7 @@ ## Synonyms - * gland of foregut-midgut junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17065] + * gland of foregut-midgut junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17065 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut-midgut junction](../../UBERON/35/UBERON_0006235.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013158 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0013558.md b/md/UBERON/58/UBERON_0013558.md index 9adf4f0319..12d44e209a 100644 --- a/md/UBERON/58/UBERON_0013558.md +++ b/md/UBERON/58/UBERON_0013558.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013558 * *Label* = Brodmann (1909) area 27 - * *Definition* = Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_27] + * *Definition* = Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_27 ] ## Synonyms - * B09-27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1758] - * BA27 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1758] - * Brodmann area 26, presubicular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1758] - * Brodmann area 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68624] - * Presubicular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68624] - * area 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68624] + * B09-27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1758 ] + * BA27 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1758 ] + * Brodmann area 26, presubicular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1758 ] + * Brodmann area 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68624 ] + * Presubicular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68624 ] + * area 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68624 ] * area 27 of Brodmann - * area 27 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1758] - * area praesubicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1758] - * B09-27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1758[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 27 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1039] - * brodmann's area 27 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1039] + * area 27 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1758 ] + * area praesubicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1758 ] + * B09-27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1758, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 27 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1039 ] + * brodmann's area 27 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1039 ] ## Cross-references * FMA:68624 * NIF_GrossAnatomy:birnlex_1758 - * NeuroNames:1039 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1758] - * UMLS:C0175194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1758] + * NeuroNames:1039 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1758 ] + * UMLS:C0175194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1758 ] * Wikipedia:Brodmann_area_27 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0013658.md b/md/UBERON/58/UBERON_0013658.md index f2e5b8c478..6739ae72ff 100644 --- a/md/UBERON/58/UBERON_0013658.md +++ b/md/UBERON/58/UBERON_0013658.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013658 * *Label* = corpus cavernosum maxillaris - * *Definition* = A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23450839] + * *Definition* = A bulbous ridge of highly vascularized tissue that runs along the center of the hard palate, expanding cranially to form two large lobes that terminate under the tip of the rostral palate, with another enlarged node at the caudal terminus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23450839 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013658 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0013758.md b/md/UBERON/58/UBERON_0013758.md index eccc42da59..e9cec60b7a 100644 --- a/md/UBERON/58/UBERON_0013758.md +++ b/md/UBERON/58/UBERON_0013758.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013758 * *Label* = cervical os - * *Definition* = One of two opening in the uterine cervix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = One of two opening in the uterine cervix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0014458.md b/md/UBERON/58/UBERON_0014458.md index 90a250e340..64a57973b4 100644 --- a/md/UBERON/58/UBERON_0014458.md +++ b/md/UBERON/58/UBERON_0014458.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bulbospongiosus muscle](../../UBERON/89/UBERON_0011389.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014458 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0014558.md b/md/UBERON/58/UBERON_0014558.md index d34f9c603f..25e9e5fce2 100644 --- a/md/UBERON/58/UBERON_0014558.md +++ b/md/UBERON/58/UBERON_0014558.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014558 * *Label* = CA2 stratum lacunosum moleculare - * *Definition* = Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4124] + * *Definition* = Part of stratum lacunosum-moleculare lying in area CA2, superficial to the CA2 stratum radiatum, that is continuous with the stratum lacunosum-moleculare in areas CA3 and CA1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4124 ] ## Synonyms - * CA2 part of stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4124[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA2 stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4124] + * CA2 part of stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4124, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA2 stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4124 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum lacunosum moleculare](../../UBERON/40/UBERON_0007640.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014558 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0014758.md b/md/UBERON/58/UBERON_0014758.md index f601710b63..dac2bd2a77 100644 --- a/md/UBERON/58/UBERON_0014758.md +++ b/md/UBERON/58/UBERON_0014758.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014758 * *Label* = interstitial part of hyperpallium apicale - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930 ] ## Synonyms - * IHA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23027930[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * IHA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23027930, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014758 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0014858.md b/md/UBERON/58/UBERON_0014858.md index 48576001dd..eb25618006 100644 --- a/md/UBERON/58/UBERON_0014858.md +++ b/md/UBERON/58/UBERON_0014858.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014858 * *Label* = post-larval stage - * *Definition* = A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Crustacean_larvae#Post-larval] + * *Definition* = A crustacean larval stage characterised by the use of abdominal appendages (pleopods) for propulsion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Crustacean_larvae#Post-larval ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014858 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_0015058.md b/md/UBERON/58/UBERON_0015058.md index 26a5e7fb2e..e5c4949cf1 100644 --- a/md/UBERON/58/UBERON_0015058.md +++ b/md/UBERON/58/UBERON_0015058.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015058 * *Label* = alisphenoid endochondral element - * *Definition* = A alisphenoid bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A alisphenoid bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * alisphenoid element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * alisphenoid skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * alisphenoid element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * alisphenoid skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [alisphenoid bone](../../UBERON/21/UBERON_0006721.md)or[alisphenoid cartilage element](../../UBERON/33/UBERON_0010733.md)or[alisphenoid pre-cartilage condensation](../../UBERON/32/UBERON_0010732.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015058 + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000058.md b/md/UBERON/58/UBERON_2000058.md index e5e27d407d..f878b449c0 100644 --- a/md/UBERON/58/UBERON_2000058.md +++ b/md/UBERON/58/UBERON_2000058.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000058 * *Label* = polster - * *Definition* = The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * pillow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * pillow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000358.md b/md/UBERON/58/UBERON_2000358.md index e2a4fc3f8a..97484c860c 100644 --- a/md/UBERON/58/UBERON_2000358.md +++ b/md/UBERON/58/UBERON_2000358.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000558.md b/md/UBERON/58/UBERON_2000558.md index 45423fdfd7..8e02c5a68e 100644 --- a/md/UBERON/58/UBERON_2000558.md +++ b/md/UBERON/58/UBERON_2000558.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000558 * *Label* = posterior macula - * *Definition* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * pm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000558] - * posteromedial macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000558] + * pm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000558 ] + * posteromedial macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000558 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000658.md b/md/UBERON/58/UBERON_2000658.md index 2ff0c7870a..23dad6c2b6 100644 --- a/md/UBERON/58/UBERON_2000658.md +++ b/md/UBERON/58/UBERON_2000658.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000658 * *Label* = epibranchial bone - * *Definition* = Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * epibranchial bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000658[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * epibranchial bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000658, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000758.md b/md/UBERON/58/UBERON_2000758.md index 74dd5323fd..0786671439 100644 --- a/md/UBERON/58/UBERON_2000758.md +++ b/md/UBERON/58/UBERON_2000758.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000758[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000758, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/58/UBERON_2000858.md b/md/UBERON/58/UBERON_2000858.md index a9a056bf31..31d39faea4 100644 --- a/md/UBERON/58/UBERON_2000858.md +++ b/md/UBERON/58/UBERON_2000858.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000858 * *Label* = somite 8 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 8 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2000958.md b/md/UBERON/58/UBERON_2000958.md index f45723a9dd..22d62fd672 100644 --- a/md/UBERON/58/UBERON_2000958.md +++ b/md/UBERON/58/UBERON_2000958.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000958 * *Label* = sclerotome somite 23 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2001058.md b/md/UBERON/58/UBERON_2001058.md index 1d9a665d66..1e14f31c19 100644 --- a/md/UBERON/58/UBERON_2001058.md +++ b/md/UBERON/58/UBERON_2001058.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001058 * *Label* = obsolete caudal fin - * *Definition* = The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * nageoire caudale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001058] - * tail fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001058] - * uropt?re [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000135] - * uropt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] + * nageoire caudale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001058 ] + * tail fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001058 ] + * uropt?re [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000135 ] + * uropt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] ## Cross-references @@ -33,8 +33,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000164 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/58/UBERON_2001658.md b/md/UBERON/58/UBERON_2001658.md index 0d4c968854..7eb164d4c1 100644 --- a/md/UBERON/58/UBERON_2001658.md +++ b/md/UBERON/58/UBERON_2001658.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001658 * *Label* = upper pharyngeal tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = This represents the condition found in catfishes. ## Synonyms - * upper pharyngeal toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001658] + * upper pharyngeal toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001658 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2001758.md b/md/UBERON/58/UBERON_2001758.md index 4d55686699..99efeeac9a 100644 --- a/md/UBERON/58/UBERON_2001758.md +++ b/md/UBERON/58/UBERON_2001758.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2001858.md b/md/UBERON/58/UBERON_2001858.md index d16ac50015..207e1e600a 100644 --- a/md/UBERON/58/UBERON_2001858.md +++ b/md/UBERON/58/UBERON_2001858.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001858 * *Label* = suprapharyngobranchial - * *Definition* = A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Articulates with the exoccipital or prootic depending on taxon. ## Synonyms - * branchial spiracle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001858] + * branchial spiracle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001858 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2001958.md b/md/UBERON/58/UBERON_2001958.md index c2db009335..686afe0863 100644 --- a/md/UBERON/58/UBERON_2001958.md +++ b/md/UBERON/58/UBERON_2001958.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001958 * *Label* = ceratobranchial 3 bone distal cartilage - * *Definition* = Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ceratobranchial 3 bone lateral cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001958] - * ceratobranchial 3 bone posterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001958] + * ceratobranchial 3 bone lateral cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001958 ] + * ceratobranchial 3 bone posterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001958 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2002058.md b/md/UBERON/58/UBERON_2002058.md index 46af24008c..7d4299af18 100644 --- a/md/UBERON/58/UBERON_2002058.md +++ b/md/UBERON/58/UBERON_2002058.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002058 * *Label* = Weberian complex centrum - * *Definition* = Centrum that is the fusion of centra 2-4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is the fusion of centra 2-4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_2002158.md b/md/UBERON/58/UBERON_2002158.md index 01551fe9d6..d1977a13bd 100644 --- a/md/UBERON/58/UBERON_2002158.md +++ b/md/UBERON/58/UBERON_2002158.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002158 * *Label* = obsolete palatine - * *Definition* = Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Depending on the teleostean group, the palatine may articulate with the entopterygoid posteriorly. The term palatine is usually used for the more advanced teleosts with a large autopalatine and a small dermopalatine represented by a few teeth. ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001682 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/58/UBERON_2002258.md b/md/UBERON/58/UBERON_2002258.md index 697e8fcff4..e0df9b2274 100644 --- a/md/UBERON/58/UBERON_2002258.md +++ b/md/UBERON/58/UBERON_2002258.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_3000658.md b/md/UBERON/58/UBERON_3000658.md index 37a389c6de..954e5dce99 100644 --- a/md/UBERON/58/UBERON_3000658.md +++ b/md/UBERON/58/UBERON_3000658.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000658 * *Label* = prechoanal process - * *Definition* = Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus choanalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000658] + * processus choanalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000658 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_3010058.md b/md/UBERON/58/UBERON_3010058.md index 1ef48e7f61..9480bc5e81 100644 --- a/md/UBERON/58/UBERON_3010058.md +++ b/md/UBERON/58/UBERON_3010058.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_3010458.md b/md/UBERON/58/UBERON_3010458.md index 3e6736fbd7..b52f0057ff 100644 --- a/md/UBERON/58/UBERON_3010458.md +++ b/md/UBERON/58/UBERON_3010458.md @@ -7,7 +7,7 @@ ## Synonyms * ala - * alae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * alae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_3010558.md b/md/UBERON/58/UBERON_3010558.md index 46aebf954f..49051608d7 100644 --- a/md/UBERON/58/UBERON_3010558.md +++ b/md/UBERON/58/UBERON_3010558.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_3010758.md b/md/UBERON/58/UBERON_3010758.md index ce9eb20dcb..5d9b2b9889 100644 --- a/md/UBERON/58/UBERON_3010758.md +++ b/md/UBERON/58/UBERON_3010758.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010758 * *Label* = M. coccygeocutaneus - * *Definition* = Originates from the posterior tip of the urostyle and inserts on the cloacal musculature and the overlying skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the posterior tip of the urostyle and inserts on the cloacal musculature and the overlying skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/58/UBERON_4200158.md b/md/UBERON/58/UBERON_4200158.md index 2a21bd07c6..94aecafaa8 100644 --- a/md/UBERON/58/UBERON_4200158.md +++ b/md/UBERON/58/UBERON_4200158.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0000059.md b/md/UBERON/59/UBERON_0000059.md index 9ec8b8387e..2e1f93b99f 100644 --- a/md/UBERON/59/UBERON_0000059.md +++ b/md/UBERON/59/UBERON_0000059.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000059 * *Label* = large intestine - * *Definition* = A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Large_intestine_(anatomy)] + * *Definition* = A subdivision of the digestive tract that connects the small intestine to the cloaca or anus. Lacks or has few villi[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Large_intestine_(anatomy) ] ## Synonyms - * intestinum crassum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000706] + * intestinum crassum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000706 ] ## Cross-references @@ -24,7 +24,7 @@ * MIAA:0000046 * OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA * SCTID:181254001 - * UMLS:C0021851 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestine] + * UMLS:C0021851 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestine ] * VHOG:0000054 * Wikipedia:Large_intestine_(anatomy) * XAO:0000131 @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0000159.md b/md/UBERON/59/UBERON_0000159.md index bbc87123d7..de491e7ab9 100644 --- a/md/UBERON/59/UBERON_0000159.md +++ b/md/UBERON/59/UBERON_0000159.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000159 * *Label* = anal canal - * *Definition* = The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_canal] + * *Definition* = The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_canal ] * *Comment* = Editor notes: requires alignment with EHDAA2 and complete developmental relationships ## Synonyms @@ -13,12 +13,12 @@ * anatomical anal canal * anal pad * anus - * canalis analis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001978] - * canalis analis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis analis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001978 ] + * canalis analis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * cloaca * cloacal chamber * mesenteron - * pars analis recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001978] + * pars analis recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001978 ] ## Cross-references @@ -28,7 +28,7 @@ * FMA:15703 * MA:0000330 * SCTID:245438008 - * UMLS:C0227411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Canal] + * UMLS:C0227411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Canal ] * Wikipedia:Anal_canal * galen:AnalCanal * http://upload.wikimedia.org/wikipedia/commons/1/17/Gray1078.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0000359.md b/md/UBERON/59/UBERON_0000359.md index d7e40dcc98..99f359efad 100644 --- a/md/UBERON/59/UBERON_0000359.md +++ b/md/UBERON/59/UBERON_0000359.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000359 * *Label* = preputial gland - * *Definition* = An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Preputial_gland] + * *Definition* = An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Preputial_gland ] ## Synonyms - * glandulae preputiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71652[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * preputial glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71652] - * preputial glands set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71652] - * set of preputial glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * glandulae preputiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71652, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * preputial glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71652 ] + * preputial glands set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71652 ] + * set of preputial glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * CALOHA:TS-0824 * SCTID:278916008 - * UMLS:C1947929 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prepucial_Gland_MMHCC] + * UMLS:C1947929 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prepucial_Gland_MMHCC ] * Wikipedia:Preputial_gland * ncithesaurus:Prepucial_Gland_MMHCC @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = There is debate about whether humans have functional homologues to preputial glands. * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9606 * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71652 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0000459.md b/md/UBERON/59/UBERON_0000459.md index a239636f6e..c5d51b8761 100644 --- a/md/UBERON/59/UBERON_0000459.md +++ b/md/UBERON/59/UBERON_0000459.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000459 * *Label* = uterine wall - * *Definition* = An anatomical wall that is part of a uterus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a uterus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anatomical wall of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterus wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterus wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0000959.md b/md/UBERON/59/UBERON_0000959.md index d6d90bebba..db5fadf53a 100644 --- a/md/UBERON/59/UBERON_0000959.md +++ b/md/UBERON/59/UBERON_0000959.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000959 * *Label* = optic chiasma - * *Definition* = Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_chiasm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_chiasm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * chiasma opticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62045[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * chiasma opticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_chiasm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chiasma opticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62045, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * chiasma opticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_chiasm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * decussation of optic nerve fibers - * optic chiasm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_chiasm] - * chiasma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:459[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * chiasma nervorum opticorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:459[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * optic chiasm (Rufus of Ephesus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:459] + * optic chiasm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_chiasm ] + * chiasma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:459, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * chiasma nervorum opticorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:459, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * optic chiasm (Rufus of Ephesus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:459 ] ## Cross-references @@ -31,11 +31,11 @@ * MA:0001098 * MESH:A08.800.800.120.680.600 * NIF_GrossAnatomy:birnlex_1416 - * NeuroNames:459 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1416] + * NeuroNames:459 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1416 ] * SCTID:244453006 * TAO:0000556 - * UMLS:C0029126 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1416] - * UMLS:C0029126 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Chiasm] + * UMLS:C0029126 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1416 ] + * UMLS:C0029126 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Chiasm ] * VHOG:0000190 * Wikipedia:Optic_chiasm * XAO:0004071 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The point at which fibers of the optic nerves cross.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001059.md b/md/UBERON/59/UBERON_0001059.md index f0aaba22c3..a8891250bb 100644 --- a/md/UBERON/59/UBERON_0001059.md +++ b/md/UBERON/59/UBERON_0001059.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001059 * *Label* = pars intercerebralis - * *Definition* = a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/pars_intercerebralis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] + * *Definition* = a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/pars_intercerebralis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html ] * *Comment* = will be ceded to arthropod anatomy ontology ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001159.md b/md/UBERON/59/UBERON_0001159.md index 170ab51c05..32ec006113 100644 --- a/md/UBERON/59/UBERON_0001159.md +++ b/md/UBERON/59/UBERON_0001159.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001159 * *Label* = sigmoid colon - * *Definition* = the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sigmoid_colon] + * *Definition* = the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sigmoid_colon ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * colon sigmoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sigmoid_colon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * colon sigmoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sigmoid_colon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pelvic colon * sigmoid colon * sigmoid flexure @@ -24,8 +24,8 @@ * MIAA:0000314 * OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA * SCTID:362166007 - * UMLS:C0227391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sigmoid_Colon] - * UMLS:C0682612 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sigmoid_Flexure] + * UMLS:C0227391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sigmoid_Colon ] + * UMLS:C0682612 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sigmoid_Flexure ] * Wikipedia:Sigmoid_colon * galen:SigmoidColon * http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001259.md b/md/UBERON/59/UBERON_0001259.md index 271a46f31f..5e0d2bbd9c 100644 --- a/md/UBERON/59/UBERON_0001259.md +++ b/md/UBERON/59/UBERON_0001259.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001259 * *Label* = mucosa of urinary bladder - * *Definition* = A mucosa that is part of a urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * bladder mucosa - * bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of bladder * mucous membrane of urinary bladder - * organ mucosa of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa (vesica urinaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15928[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica mucosa vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15928[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica mucosa vesicae urinariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * organ mucosa of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa (vesica urinaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15928, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica mucosa vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15928, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica mucosa vesicae urinariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] * urinary bladder mucosa - * urinary bladder mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urinary bladder mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ * FMA:15928 * MA:0001692 * SCTID:362224004 - * UMLS:C0227691 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Mucosa] + * UMLS:C0227691 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Mucosa ] * galen:MucousMembraneOfUrinaryBladder * ncithesaurus:Bladder_Mucosa @@ -51,15 +51,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001359.md b/md/UBERON/59/UBERON_0001359.md index f777a8845b..7a1f126128 100644 --- a/md/UBERON/59/UBERON_0001359.md +++ b/md/UBERON/59/UBERON_0001359.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001359 * *Label* = cerebrospinal fluid - * *Definition* = a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebrospinal_fluid] + * *Definition* = a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebrospinal_fluid ] * *Comment* = AO notes: the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations. ## Synonyms * CSF - * cerebral spinal fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001626] - * liquor cerebrospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebrospinal_fluid] - * spinal fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000237] + * cerebral spinal fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001626 ] + * liquor cerebrospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebrospinal_fluid ] + * spinal fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000237 ] ## Cross-references @@ -28,8 +28,8 @@ * MESH:A12.207.268 * NIF_GrossAnatomy:birnlex_1798 * TAO:0002184 - * UMLS:C0007806 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1798] - * UMLS:C0007806 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebrospinal_Fluid] + * UMLS:C0007806 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1798 ] + * UMLS:C0007806 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebrospinal_Fluid ] * VHOG:0001278 * Wikipedia:Cerebrospinal_fluid * ZFA:0001626 @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In vertebrates, at early stages of Central Nervous System (CNS) development, the architecture of the brain primordium reveals the presence of the cavity of brain vesicles, which is filled by Embryonic Cerebro-Spinal Fluid (E-CSF). (...) Rat and chick E-CSF proteomes are similar, although rat is more complex in certain groups of proteins, e.g., apolipoproteins, which may be involved in the control of neural diversity, and has soluble enzymes present, just like adult human CSF, but unlike chick E-CSF, revealing phylogenetic brain differences between these groups of vertebrates.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001459.md b/md/UBERON/59/UBERON_0001459.md index 61eb89d00e..3e01887168 100644 --- a/md/UBERON/59/UBERON_0001459.md +++ b/md/UBERON/59/UBERON_0001459.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001459 * *Label* = skin of external ear - * *Definition* = A zone of skin that is part of a external ear [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a external ear [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * auricular region of head zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricular region zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * auricular region of head zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricular region zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ear skin * external ear skin - * external ear zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outer ear zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of auricular region of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of external ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of outer ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * external ear zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outer ear zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of auricular region of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of external ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of outer ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:24775 * MA:0001233 * SCTID:244073008 - * UMLS:C0222110 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ear_Skin] + * UMLS:C0222110 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ear_Skin ] * ncithesaurus:Ear_Skin ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [external ear](../../UBERON/91/UBERON_0001691.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001559.md b/md/UBERON/59/UBERON_0001559.md index 1588973563..f136962fd2 100644 --- a/md/UBERON/59/UBERON_0001559.md +++ b/md/UBERON/59/UBERON_0001559.md @@ -7,7 +7,7 @@ ## Synonyms - * head organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000581] + * head organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000581 ] * organ head ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:45729 * *[consider](../../er/oboInOwl#consider.md)* = MA:0000581 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001559 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_0001659.md b/md/UBERON/59/UBERON_0001659.md index 109fa6d189..7c1d4a337f 100644 --- a/md/UBERON/59/UBERON_0001659.md +++ b/md/UBERON/59/UBERON_0001659.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001659 * *Label* = transverse facial vein - * *Definition* = The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_temporal_vein] + * *Definition* = The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_temporal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001759.md b/md/UBERON/59/UBERON_0001759.md index ad659d8df6..7cb6a8089c 100644 --- a/md/UBERON/59/UBERON_0001759.md +++ b/md/UBERON/59/UBERON_0001759.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001759 * *Label* = vagus nerve - * *Definition* = Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vagus_nerve] + * *Definition* = Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vagus_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Vagus nerve [X] - * nervus vagus [x] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5731[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus vagus [x] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5731, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tenth cranial nerve * vagus - * vagus X nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001106] + * vagus X nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001106 ] * vagus nerve tree - * 10n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_801[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 10n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_801, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-X * cranial nerve X - * nerve X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:702] - * nervus vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003472] - * nervus vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vagus_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pneuomgastric nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003472] + * nerve X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:702 ] + * nervus vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003472 ] + * nervus vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vagus_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pneuomgastric nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003472 ] * vagal nerve - * vagus nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:10n] + * vagus nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:10n ] ## Cross-references @@ -36,13 +36,13 @@ * MA:0001106 * MESH:A08.800.050.050.925 * NIF_GrossAnatomy:birnlex_801 - * NeuroNames:702 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_801] + * NeuroNames:702 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_801 ] * OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA * SCTID:362466001 * TAO:0000453 - * UMLS:C0042276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_801] - * UMLS:C0042276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vagus_Nerve] - * UMLS:C1305910 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_801] + * UMLS:C0042276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_801 ] + * UMLS:C0042276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vagus_Nerve ] + * UMLS:C1305910 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_801 ] * VHOG:0000737 * Wikipedia:Vagus_nerve * XAO:0003097 @@ -77,8 +77,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nerve consisting of branchiomotor and visceral efferent fibers which branch and innervate the smooth muscles and glands of the heart, lungs, esophagus, and stomach as well as some throat muscles. Sensory fibers supply mucosa of the mouth and pharynx.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001859.md b/md/UBERON/59/UBERON_0001859.md index 61794f5f5f..de875b6eee 100644 --- a/md/UBERON/59/UBERON_0001859.md +++ b/md/UBERON/59/UBERON_0001859.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001859 * *Label* = lateral semicircular duct - * *Definition* = The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_semicircular_duct] + * *Definition* = The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_semicircular_duct ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Gnathostome ears have a horizontal semicircular duct. This brings their complement to three semicircular ducts, a pattern retained throughout gnathostome evolution. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.58] ; In gnathostomes, each membranous labyrinth has three semicircular ducts that connect with a chamber known as the utriculus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0001959.md b/md/UBERON/59/UBERON_0001959.md index 54b3f9ae61..31719e19cf 100644 --- a/md/UBERON/59/UBERON_0001959.md +++ b/md/UBERON/59/UBERON_0001959.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001959 * *Label* = white pulp of spleen - * *Definition* = The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:White_pulp] + * *Definition* = The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:White_pulp ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * pulpa alba [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62805[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pulpa alba [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62805, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spleen white pulp * splenic white pulp * white pulp - * noduli lymphoidei splenici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:White_pulp[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * noduli lymphoidei splenici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:White_pulp, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * CALOHA:TS-1264 * FMA:62805 * MA:0000762 - * UMLS:C0229686 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_White_Pulp] + * UMLS:C0229686 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_White_Pulp ] * Wikipedia:White_pulp * http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002059.md b/md/UBERON/59/UBERON_0002059.md index 24a9d1c6e1..9ef30f7949 100644 --- a/md/UBERON/59/UBERON_0002059.md +++ b/md/UBERON/59/UBERON_0002059.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002059 * *Label* = submandibular ganglion - * *Definition* = The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_ganglion] + * *Definition* = The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_ganglion ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Blandin`s ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001318] - * ganglion submandibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001318] - * ganglion submandibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Submandibular_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lingual ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002470[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376] - * maxillary ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002470] - * submaxillary ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002470] + * Blandin`s ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001318 ] + * ganglion submandibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001318 ] + * ganglion submandibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Submandibular_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lingual ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002470, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376 ] + * maxillary ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002470 ] + * submaxillary ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002470 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:6966 * MA:0002470 * SCTID:279282000 - * UMLS:C0229063 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Submandibular_Ganglion] + * UMLS:C0229063 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Submandibular_Ganglion ] * Wikipedia:Submandibular_ganglion * http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png * http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002159.md b/md/UBERON/59/UBERON_0002159.md index 5ef09ba379..546d234a08 100644 --- a/md/UBERON/59/UBERON_0002159.md +++ b/md/UBERON/59/UBERON_0002159.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002159 * *Label* = medial accessory inferior olivary nucleus - * *Definition* = The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body#Olivary_nuclei] + * *Definition* = The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body#Olivary_nuclei ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -12,7 +12,7 @@ * inferior olive medial nucleus * inferior olive, medial nucleus * medial accessory olivary nucleus - * nucleus olivaris accessorius medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72594[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus olivaris accessorius medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72594, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002259.md b/md/UBERON/59/UBERON_0002259.md index dc99c68bf6..b9ec653212 100644 --- a/md/UBERON/59/UBERON_0002259.md +++ b/md/UBERON/59/UBERON_0002259.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002259 * *Label* = corpora quadrigemina - * *Definition* = In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculitwo inferior, two superiorlocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001710[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpora_quadrigemina] + * *Definition* = In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculitwo inferior, two superiorlocated on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001710, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpora_quadrigemina ] * *Comment* = editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates ## Synonyms - * colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000899] + * colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000899 ] * corpora quadrigemina - * set of colliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242157] + * set of colliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242157 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A08.186.211.132.659.237 * NeuroNames:1279 * SCTID:361579006 - * UMLS:C0010087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpora_Quadrigemina] + * UMLS:C0010087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpora_Quadrigemina ] * Wikipedia:Corpora_quadrigemina * http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002359.md b/md/UBERON/59/UBERON_0002359.md index d4eb234148..970fc9c83a 100644 --- a/md/UBERON/59/UBERON_0002359.md +++ b/md/UBERON/59/UBERON_0002359.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002359 * *Label* = fibrous pericardium - * *Definition* = Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_pericardium] + * *Definition* = Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_pericardium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * fibrous portion of pericardium - * pericardium fibrosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fibrous_pericardium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pericardium fibrosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fibrous_pericardium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002459.md b/md/UBERON/59/UBERON_0002459.md index a50ef5eba8..936fd49705 100644 --- a/md/UBERON/59/UBERON_0002459.md +++ b/md/UBERON/59/UBERON_0002459.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002459 * *Label* = inferior palpebral vein - * *Definition* = A blood vessel that drains from from an lower eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A blood vessel that drains from from an lower eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * inferior palpebral veins * inferior palpebral veins set * vein of inferior eyelid - * lower palpebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002147] - * venae palpebrales inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70847[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lower palpebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002147 ] + * venae palpebrales inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70847, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * MA:0002147 * SCTID:422559003 - * UMLS:C1760539 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Palpebral_Vein] + * UMLS:C1760539 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Palpebral_Vein ] * ncithesaurus:Inferior_Palpebral_Vein ## Subsets @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [lower eyelid](../../UBERON/13/UBERON_0001713.md) and [palpebral vein](../../UBERON/69/UBERON_0014769.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_70847 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002559.md b/md/UBERON/59/UBERON_0002559.md index ccb86aa629..34a8a8e75a 100644 --- a/md/UBERON/59/UBERON_0002559.md +++ b/md/UBERON/59/UBERON_0002559.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002559 * *Label* = medullary reticular formation - * *Definition* = The reticular formation is a series of brain nuclei located in the medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021723] + * *Definition* = The reticular formation is a series of brain nuclei located in the medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021723 ] * *Comment* = note that ZFA:0000421 is part of the the medulla oblongata, so it is placed here, rather than with the generic term ## Synonyms - * bulb reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bulbar reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72241] - * medulla oblongata reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla oblonmgata reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medullary reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001049] - * metepencephalon reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular formation of bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular formation of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72241] - * reticular formation of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular formation of medulla oblonmgata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular formation of metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhombencephalic reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021723] - * reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000421] - * formatio reticularis myelencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:725[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bulb reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bulbar reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72241 ] + * medulla oblongata reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla oblonmgata reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medullary reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001049 ] + * metepencephalon reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular formation of bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular formation of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72241 ] + * reticular formation of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular formation of medulla oblonmgata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular formation of metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhombencephalic reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021723 ] + * reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000421 ] + * formatio reticularis myelencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:725, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,10 +34,10 @@ * GAID:588 * MA:0001049 * NIF_GrossAnatomy:birnlex_1020 - * NeuroNames:725 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1020] + * NeuroNames:725 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1020 ] * SCTID:369059009 * TAO:0000421 - * UMLS:C0228520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1020] + * UMLS:C0228520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1020 ] * ZFA:0000421 ## Subsets @@ -52,15 +52,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) and [reticular formation](../../UBERON/75/UBERON_0002275.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002659.md b/md/UBERON/59/UBERON_0002659.md index c751b59d17..ee855ffc57 100644 --- a/md/UBERON/59/UBERON_0002659.md +++ b/md/UBERON/59/UBERON_0002659.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002659 * *Label* = superior medullary velum - * *Definition* = The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_medullary_velum] + * *Definition* = The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_medullary_velum ] ## Synonyms - * anterior medullary velum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74508] - * rostral medullary velum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:593] - * velum medullare anterius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:593[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * velum medullare craniale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:593[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * velum medullare rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:593[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * velum medullare superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:593[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * velum medullare superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_medullary_velum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior medullary velum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74508 ] + * rostral medullary velum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:593 ] + * velum medullare anterius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:593, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * velum medullare craniale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:593, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * velum medullare rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:593, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * velum medullare superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:593, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * velum medullare superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_medullary_velum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,9 +22,9 @@ * BAMS:smv * FMA:74508 * NIF_GrossAnatomy:birnlex_1300 - * NeuroNames:593 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1300] + * NeuroNames:593 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1300 ] * SCTID:369269006 - * UMLS:C0152284 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1300] + * UMLS:C0152284 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1300 ] * Wikipedia:Superior_medullary_velum * http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002759.md b/md/UBERON/59/UBERON_0002759.md index 2f07297ae4..ba489bf6f2 100644 --- a/md/UBERON/59/UBERON_0002759.md +++ b/md/UBERON/59/UBERON_0002759.md @@ -6,28 +6,28 @@ ## Synonyms - * corpus geniculatus mediale, pars magnocelluaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1612] - * magnocelluar nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1612] - * medial division of medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62218] - * medial geniculate complex, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62218] - * medial geniculate nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62218] - * medial magnocellular nucleus of medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62218] - * medial nucleus of medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62218] - * nucleus corporis geniculati medialis, pars magnocelluaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1612] - * nucleus geniculatus medialis magnocelluaris (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1612] - * nucleus geniculatus medialis, pars magnocelluaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1612] - * MMG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1612[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpus geniculatus mediale, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * magnocellular medial geniculate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGM] - * magnocellular nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358] - * magnocellular nucleus of the medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358] - * medial geniculate complex medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGm] - * medial geniculate nucleus medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGM] - * medial geniculate nucleus medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGm] - * nucleus corporis geniculati medialis, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus geniculatus medialis magnocellularis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus geniculatus medialis, pars magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:358[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis magnocellularis corporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002672] + * corpus geniculatus mediale, pars magnocelluaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1612 ] + * magnocelluar nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1612 ] + * medial division of medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62218 ] + * medial geniculate complex, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62218 ] + * medial geniculate nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62218 ] + * medial magnocellular nucleus of medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62218 ] + * medial nucleus of medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62218 ] + * nucleus corporis geniculati medialis, pars magnocelluaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1612 ] + * nucleus geniculatus medialis magnocelluaris (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1612 ] + * nucleus geniculatus medialis, pars magnocelluaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1612 ] + * MMG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1612, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpus geniculatus mediale, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * magnocellular medial geniculate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGM ] + * magnocellular nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358 ] + * magnocellular nucleus of the medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358 ] + * medial geniculate complex medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGm ] + * medial geniculate nucleus medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGM ] + * medial geniculate nucleus medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGm ] + * nucleus corporis geniculati medialis, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus geniculatus medialis magnocellularis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus geniculatus medialis, pars magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:358, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis magnocellularis corporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002672 ] ## Cross-references @@ -38,8 +38,8 @@ * BTO:0002672 * FMA:62218 * NIF_GrossAnatomy:birnlex_1612 - * NeuroNames:358 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1612] - * UMLS:C0175296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1612] + * NeuroNames:358 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1612 ] + * UMLS:C0175296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1612 ] ## Subsets @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002859.md b/md/UBERON/59/UBERON_0002859.md index 08c92864d3..52791b04ae 100644 --- a/md/UBERON/59/UBERON_0002859.md +++ b/md/UBERON/59/UBERON_0002859.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002859 * *Label* = fifth lumbar dorsal root ganglion - * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001022] + * *Definition* = the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001022 ] ## Synonyms - * L5 dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001022] - * fifth lumbar dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6339] - * fifth lumbar spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6339] + * L5 dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001022 ] + * fifth lumbar dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6339 ] + * fifth lumbar spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6339 ] * L5 ganglion ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:25168 * FMA:6339 * NIF_GrossAnatomy:birnlex_2627 - * UMLS:C0501717 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2627] + * UMLS:C0501717 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2627 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003944 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0002959.md b/md/UBERON/59/UBERON_0002959.md index e793870ae0..886979e2c1 100644 --- a/md/UBERON/59/UBERON_0002959.md +++ b/md/UBERON/59/UBERON_0002959.md @@ -6,16 +6,16 @@ ## Synonyms - * SF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_783[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus subfascicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:311[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * SF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_783, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus subfascicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:311, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:SF * FMA:62155 * NIF_GrossAnatomy:birnlex_783 - * NeuroNames:311 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_783] - * UMLS:C0175256 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_783] + * NeuroNames:311 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_783 ] + * UMLS:C0175256 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_783 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003059.md b/md/UBERON/59/UBERON_0003059.md index 114a1a6813..bc6a4c5d0f 100644 --- a/md/UBERON/59/UBERON_0003059.md +++ b/md/UBERON/59/UBERON_0003059.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003059 * *Label* = presomitic mesoderm - * *Definition* = Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms * segmental plate - * unsegmented paraxial mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * unsegmented paraxial mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * PSM * presumptive somite mesoderm * somitogenic mesoderm - * unsegmented mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000559] + * unsegmented mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000559 ] ## Cross-references @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It is reasonable to assume that the proximate invertebrate ancestor of the vertebrates had an amphioxus-like tail bud in its larval stage. This archetypal tail bud would have (...) (3) lacked any component of mesenchyme cells, (4) budded off new mesodermal segments directly, without any intervening zone of presomitic mesoderm (...). Then, early in vertebrate evolution, epithelium-to-mesenchyme interconversions (and the gene networks for effecting them) became prominent features of development. (...) In any case, conspicuous mesenchymal components tended to be added to the vertebrate tail bud itself. In addition, a mesenchymatous presomitic mesoderm (not a part of the tail bud proper) came to intervene between the tail bud and the forming somites.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003159.md b/md/UBERON/59/UBERON_0003159.md index a39a6b224b..e2dd7bc8ae 100644 --- a/md/UBERON/59/UBERON_0003159.md +++ b/md/UBERON/59/UBERON_0003159.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004502 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000126 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003159 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_0003259.md b/md/UBERON/59/UBERON_0003259.md index e206c3fd8b..1d0414b613 100644 --- a/md/UBERON/59/UBERON_0003259.md +++ b/md/UBERON/59/UBERON_0003259.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003259 * *Label* = endoderm of midgut - * *Definition* = An endoderm that is part of a midgut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a midgut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * midgut endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * midgut endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003359.md b/md/UBERON/59/UBERON_0003359.md index 7b1d99ce7a..47a4950344 100644 --- a/md/UBERON/59/UBERON_0003359.md +++ b/md/UBERON/59/UBERON_0003359.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003359 * *Label* = epithelium of submandibular gland - * *Definition* = An epithelium that is part of a submandibular gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a submandibular gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of submandibular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submandibular gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submandibular gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submandibular duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004557] - * submandibular gland duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004557] + * epithelial tissue of submandibular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submandibular gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submandibular gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submandibular duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004557 ] + * submandibular gland duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004557 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submandibular gland](../../UBERON/36/UBERON_0001736.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003459.md b/md/UBERON/59/UBERON_0003459.md index eddc95641b..2151f7c3bd 100644 --- a/md/UBERON/59/UBERON_0003459.md +++ b/md/UBERON/59/UBERON_0003459.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003459 * *Label* = chest bone - * *Definition* = A bone that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior thoracic region bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterior thoracic region bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterior thoracic region bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003559.md b/md/UBERON/59/UBERON_0003559.md index 39e13d8f42..c1653892db 100644 --- a/md/UBERON/59/UBERON_0003559.md +++ b/md/UBERON/59/UBERON_0003559.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003559 * *Label* = hindbrain arachnoid mater - * *Definition* = An arachnoid mater that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arachnoid mater of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of neuraxis of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindbrain arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindbrain arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhombencephalon arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000236] + * arachnoid mater of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of neuraxis of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindbrain arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindbrain arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhombencephalon arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000236 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Arachnoid mater that is part of the hindbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003659.md b/md/UBERON/59/UBERON_0003659.md index d9f706d5d4..a13907035c 100644 --- a/md/UBERON/59/UBERON_0003659.md +++ b/md/UBERON/59/UBERON_0003659.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003659 * *Label* = pedal digit muscle - * *Definition* = A muscle organ that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of foot muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000648] - * foot digit muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * muscle organ of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit of foot muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000648 ] + * foot digit muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * muscle organ of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003859.md b/md/UBERON/59/UBERON_0003859.md index 216044f429..4a18defdf1 100644 --- a/md/UBERON/59/UBERON_0003859.md +++ b/md/UBERON/59/UBERON_0003859.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003859 * *Label* = forelimb mesenchyme - * *Definition* = Mesenchyme that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wing mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wing mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0003959.md b/md/UBERON/59/UBERON_0003959.md index 1a395f40b3..663dd36c4c 100644 --- a/md/UBERON/59/UBERON_0003959.md +++ b/md/UBERON/59/UBERON_0003959.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003959 * *Label* = rete testis - * *Definition* = An anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006416[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rete_testis] + * *Definition* = An anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006416, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rete_testis ] * *Comment* = Editors note: add more specific classification e.g. anastomosing network - consider FMA:3726 ## Synonyms - * Haller's rete [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19834] + * Haller's rete [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19834 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:399 * MESH:A05.360.444.849.600 * SCTID:279617009 - * UMLS:C0035278 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rete_Testis] + * UMLS:C0035278 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rete_Testis ] * Wikipedia:Rete_testis * http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004059.md b/md/UBERON/59/UBERON_0004059.md index 93c4888f9b..19fbb4e62b 100644 --- a/md/UBERON/59/UBERON_0004059.md +++ b/md/UBERON/59/UBERON_0004059.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004059 * *Label* = spinal cord medial motor column - * *Definition* = the subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009686] + * *Definition* = the subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009686 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004159.md b/md/UBERON/59/UBERON_0004159.md index 5b7a859e51..b43b61c125 100644 --- a/md/UBERON/59/UBERON_0004159.md +++ b/md/UBERON/59/UBERON_0004159.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004159 * *Label* = atrial septum intermedium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003291] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003291 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004259.md b/md/UBERON/59/UBERON_0004259.md index 7ef9e0bee9..b9e0ecaf94 100644 --- a/md/UBERON/59/UBERON_0004259.md +++ b/md/UBERON/59/UBERON_0004259.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004259 * *Label* = lower arm blood vessel - * *Definition* = A blood vessel that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forelimb zeugopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * forelimb zeugopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004359.md b/md/UBERON/59/UBERON_0004359.md index bdb3eff292..f7bfbb9c42 100644 --- a/md/UBERON/59/UBERON_0004359.md +++ b/md/UBERON/59/UBERON_0004359.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004359 * *Label* = corpus epididymis - * *Definition* = the body of the epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002661] + * *Definition* = the body of the epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002661 ] ## Synonyms - * body of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18260] - * body of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18260] + * body of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18260 ] + * body of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18260 ] * body of epidymis - * epididymal body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18260] - * epididymis body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18260] + * epididymal body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18260 ] + * epididymis body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18260 ] * epidymis body - * corpus epididymidis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000209] + * corpus epididymidis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000209 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:18260 * MA:0002764 * SCTID:279620001 - * UMLS:C0228022 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Body_of_the_Epididymis] + * UMLS:C0228022 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Body_of_the_Epididymis ] * ncithesaurus:Body_of_the_Epididymis ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004659.md b/md/UBERON/59/UBERON_0004659.md index 7c9cea849d..49c793ce18 100644 --- a/md/UBERON/59/UBERON_0004659.md +++ b/md/UBERON/59/UBERON_0004659.md @@ -6,8 +6,8 @@ ## Synonyms - * Mandibular neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59332] - * neck of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59332] + * Mandibular neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59332 ] + * neck of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59332 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004759.md b/md/UBERON/59/UBERON_0004759.md index 54603c0cbe..b7e791432c 100644 --- a/md/UBERON/59/UBERON_0004759.md +++ b/md/UBERON/59/UBERON_0004759.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004759 * *Label* = salt gland of cranial region - * *Definition* = A salt gland located in the cranium or cranial region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A salt gland located in the cranium or cranial region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [sodium ion homeostasis](../../GO/78/GO_0055078.md) and [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cranium](../../UBERON/28/UBERON_0003128.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0004859.md b/md/UBERON/59/UBERON_0004859.md index 2e792b2dd3..43bf93739f 100644 --- a/md/UBERON/59/UBERON_0004859.md +++ b/md/UBERON/59/UBERON_0004859.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004859 * *Label* = eye gland - * *Definition* = A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A gland that is part of a eye. The eye is a compound unit which depending on the species may consist of an eyeballs plus associated ducts and integumentary structures. Eye glands therefore include the various types of lacrimal gland, the various types of apocrine and sebaceous glands associated with the eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Examples: harderian gland, accessory lacrimal gland, gland of Moll, gland of Zeis, nictitating membrane glands ## Synonyms - * eye-associated gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * gland of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * eye-associated gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * gland of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eye](../../UBERON/70/UBERON_0000970.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0005059.md b/md/UBERON/59/UBERON_0005059.md index fe6d4959fe..2ca0c26afa 100644 --- a/md/UBERON/59/UBERON_0005059.md +++ b/md/UBERON/59/UBERON_0005059.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005059 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_0005159.md b/md/UBERON/59/UBERON_0005159.md index 2531dd23ac..9d6c17063a 100644 --- a/md/UBERON/59/UBERON_0005159.md +++ b/md/UBERON/59/UBERON_0005159.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005159 * *Label* = pyramid of medulla oblongata - * *Definition* = The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramid_(brainstem)] + * *Definition* = The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramid_(brainstem) ] ## Synonyms - * lobule VIII of Larsell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75254] - * medullary pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75254] - * pyramid of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75254] - * pyramid of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyramid_(brainstem)] + * lobule VIII of Larsell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75254 ] + * medullary pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75254 ] + * pyramid of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75254 ] + * pyramid of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyramid_(brainstem) ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0005259.md b/md/UBERON/59/UBERON_0005259.md index b45d281145..12c14f9799 100644 --- a/md/UBERON/59/UBERON_0005259.md +++ b/md/UBERON/59/UBERON_0005259.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005259 * *Label* = lower leg mesenchyme - * *Definition* = Mesenchyme that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0005359.md b/md/UBERON/59/UBERON_0005359.md index cd44bdaf63..1a29d42573 100644 --- a/md/UBERON/59/UBERON_0005359.md +++ b/md/UBERON/59/UBERON_0005359.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005359 * *Label* = spinal cord ependyma - * *Definition* = An ependyma that is part of a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ependyma that is part of a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in FMA this is treated as part of the ependyma, but here we treat ependyma as a portion ## Synonyms - * ependyma of central canal of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242839] - * spinal cord ependymal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001125] + * ependyma of central canal of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242839 ] + * spinal cord ependymal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001125 ] * spinal cord ventricular layer ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ependyma](../../UBERON/70/UBERON_0004670.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0005459.md b/md/UBERON/59/UBERON_0005459.md index c92c8c3942..dcd34adf1b 100644 --- a/md/UBERON/59/UBERON_0005459.md +++ b/md/UBERON/59/UBERON_0005459.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005459 * *Label* = left umbilical vein - * *Definition* = An umbilical vein that is in the left side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An umbilical vein that is in the left side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [umbilical vein](../../UBERON/66/UBERON_0002066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0005659.md b/md/UBERON/59/UBERON_0005659.md index 37b394bffe..ad22baa38a 100644 --- a/md/UBERON/59/UBERON_0005659.md +++ b/md/UBERON/59/UBERON_0005659.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005659 * *Label* = primary palate epithelium - * *Definition* = An epithelium that is part of a primary palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a primary palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [primary palate](../../UBERON/20/UBERON_0005620.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006059.md b/md/UBERON/59/UBERON_0006059.md index afd03760b9..6bb1bbb0da 100644 --- a/md/UBERON/59/UBERON_0006059.md +++ b/md/UBERON/59/UBERON_0006059.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006059 * *Label* = falx cerebri - * *Definition* = The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Falx_cerebri] + * *Definition* = The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Falx_cerebri ] ## Synonyms - * cerebral falx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83967] + * cerebral falx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83967 ] ## Cross-references @@ -15,7 +15,7 @@ * FMA:83967 * NeuroNames:1237 * SCTID:279275004 - * UMLS:C0228120 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Falx_Cerebri] + * UMLS:C0228120 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Falx_Cerebri ] * Wikipedia:Falx_cerebri * http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg * ncithesaurus:Falx_Cerebri @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006259.md b/md/UBERON/59/UBERON_0006259.md index 9b743c669e..34050b5f81 100644 --- a/md/UBERON/59/UBERON_0006259.md +++ b/md/UBERON/59/UBERON_0006259.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006259 * *Label* = lens pit - * *Definition* = a pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/lens+pit] + * *Definition* = a pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/lens+pit ] ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0000981 * EHDAA:3809 * EMAPA:16799 - * UMLS:C1517769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lens_Pit] + * UMLS:C1517769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lens_Pit ] * VHOG:0000806 * ncithesaurus:Lens_Pit @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A pitlike depression in the ectoderm of the lens placode where the primordial lens is developing. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006359.md b/md/UBERON/59/UBERON_0006359.md index acc580511c..9fd0695dd6 100644 --- a/md/UBERON/59/UBERON_0006359.md +++ b/md/UBERON/59/UBERON_0006359.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006459.md b/md/UBERON/59/UBERON_0006459.md index 2fc8842192..a9432f3007 100644 --- a/md/UBERON/59/UBERON_0006459.md +++ b/md/UBERON/59/UBERON_0006459.md @@ -6,16 +6,16 @@ ## Synonyms - * T3 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1458] - * t3 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71169] - * third thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1458] + * T3 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1458 ] + * t3 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71169 ] + * third thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1458 ] ## Cross-references * FMA:71169 * NIF_GrossAnatomy:birnlex_1458 * SCTID:278764009 - * UMLS:C0457861 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1458] + * UMLS:C0457861 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1458 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006659.md b/md/UBERON/59/UBERON_0006659.md index e184ad15b7..880167e317 100644 --- a/md/UBERON/59/UBERON_0006659.md +++ b/md/UBERON/59/UBERON_0006659.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006659 * *Label* = cruciate ligament of knee - * *Definition* = One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament] + * *Definition* = One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament ] ## Synonyms - * cruciate ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44611] - * cruciform ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cruciate_ligament] + * cruciate ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44611 ] + * cruciform ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cruciate_ligament ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006859.md b/md/UBERON/59/UBERON_0006859.md index e5e08847db..75451f6bc3 100644 --- a/md/UBERON/59/UBERON_0006859.md +++ b/md/UBERON/59/UBERON_0006859.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006859 * *Label* = swim bladder bud - * *Definition* = Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-090511-18[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-100202-11] + * *Definition* = Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-090511-18, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-100202-11 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0006959.md b/md/UBERON/59/UBERON_0006959.md index 2d82a992c9..03ceaaa94a 100644 --- a/md/UBERON/59/UBERON_0006959.md +++ b/md/UBERON/59/UBERON_0006959.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006959 * *Label* = mandible angular process - * *Definition* = a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/mandibular+angular+process] + * *Definition* = a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/mandibular+angular+process ] ## Synonyms - * mandibular angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002873] + * mandibular angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002873 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0007159.md b/md/UBERON/59/UBERON_0007159.md index 6f362d1db8..3bc78b87c0 100644 --- a/md/UBERON/59/UBERON_0007159.md +++ b/md/UBERON/59/UBERON_0007159.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007159 * *Label* = lumen of colon - * *Definition* = An anatomical cavity that surrounded_by a colon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a colon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * colon lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18374] + * colon lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18374 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0007359.md b/md/UBERON/59/UBERON_0007359.md index 80182970dd..705fbb1be0 100644 --- a/md/UBERON/59/UBERON_0007359.md +++ b/md/UBERON/59/UBERON_0007359.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007359 * *Label* = ruminant forestomach - * *Definition* = Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000480] + * *Definition* = Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000480 ] * *Comment* = Development/homology notes: You will still see the statement in some texts that the parts of the forestomach are derived from the embryonic esophagus, and that's the reason why (like the esophagus) they're lined with stratified squamous epithelium. This is open to doubt. While there is no doubt that the rumen, reticulum, and omasum are all derived from the embryonic foregut, there is evidence to indicate that all three come from that an area of the foregut homologous to the part that develops into the single stomach of non-ruminants. If this is so, then the forestomach can be considered diverticula (or derivatives) of the stomach proper, not the esophagus, despite the nature of the lining -- http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab21/Examples/exrumen.htm ## Synonyms - * forestomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000480[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * forestomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000480, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0007759.md b/md/UBERON/59/UBERON_0007759.md index d68b94ebca..d54bd49da5 100644 --- a/md/UBERON/59/UBERON_0007759.md +++ b/md/UBERON/59/UBERON_0007759.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007759 * *Label* = metatarsophalangeal joint of pedal digit 4 - * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note the name of the structure in EMAPA is incorrect ## Synonyms - * metatarsophalangeal joint of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35237] - * metatarsophalangeal joint of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35237[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsophalangeal joint of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35237 ] + * metatarsophalangeal joint of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35237, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pedal digit 4](../../UBERON/18/UBERON_0004318.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0007959.md b/md/UBERON/59/UBERON_0007959.md index 1483944f6b..2778a324ca 100644 --- a/md/UBERON/59/UBERON_0007959.md +++ b/md/UBERON/59/UBERON_0007959.md @@ -7,8 +7,8 @@ ## Synonyms - * os falciform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * os falciforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * os falciform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * os falciforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0008259.md b/md/UBERON/59/UBERON_0008259.md index 5ea5522c9b..c50a6d1b10 100644 --- a/md/UBERON/59/UBERON_0008259.md +++ b/md/UBERON/59/UBERON_0008259.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0008459.md b/md/UBERON/59/UBERON_0008459.md index 0581c5dd65..bcda06068e 100644 --- a/md/UBERON/59/UBERON_0008459.md +++ b/md/UBERON/59/UBERON_0008459.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008459 * *Label* = superior articular process of cervical vertebra - * *Definition* = A superior articular process of vertebra that is part of a cervical vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A superior articular process of vertebra that is part of a cervical vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) and [superior articular process of vertebra](../../UBERON/79/UBERON_0001079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0008859.md b/md/UBERON/59/UBERON_0008859.md index 9a8504b9e5..af72caf0f8 100644 --- a/md/UBERON/59/UBERON_0008859.md +++ b/md/UBERON/59/UBERON_0008859.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008859 * *Label* = cardiac gastric gland - * *Definition* = A gastric gland in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010795[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_glands] + * *Definition* = A gastric gland in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010795, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_glands ] * *Comment* = Consistency note: Kardong places this in the glandular epithelium, FMA more generally in the mucosa ## Synonyms - * gardiac gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * gastric cardiac gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14920] - * gastric gland of cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14920] - * glandula cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14920] - * cardiac gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14920] + * gardiac gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * gastric cardiac gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14920 ] + * gastric gland of cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14920 ] + * glandula cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14920 ] + * cardiac gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14920 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gastric gland](../../UBERON/25/UBERON_0000325.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardia of stomach](../../UBERON/62/UBERON_0001162.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cardiac glands of the stomach secrete primarily mucus. They are few in number and occur close to the cardiac orifice where the esophagus joins the stomach. In general, they are more shallow than those in the other parts of the stomach. They are of two kinds: (1) simple tubular glands resembling those of the pyloric end of the stomach, but with short ducts. (2) compound racemose glands resembling the duodenal glands. The cardiac gland is both innervated by the parasympathetic and symapthetic nerve fibres of the autonomic nervous system[Wikipedia:Cardiac_glands]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0008959.md b/md/UBERON/59/UBERON_0008959.md index 766a5c88d6..2b49e04e58 100644 --- a/md/UBERON/59/UBERON_0008959.md +++ b/md/UBERON/59/UBERON_0008959.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008959 * *Label* = auditory bulla - * *Definition* = a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_bulla] + * *Definition* = a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_bulla ] * *Comment* = In extant primates, the structure is found in tarsiers, lemurs, and lorises[WP]. When present in marsupials, it usually forms the alisphenoid; in placentals variously constructed of ectotympanic, entotympanic, petrosal, or a combination of these and others[Rose] Comment: may be formed from entotympanic and ectotympanic ## Synonyms * bulla * sigmoid process - * auditory bullae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * bulla tympanica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * auditory bullae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * bulla tympanica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tympanic bulla ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0009559.md b/md/UBERON/59/UBERON_0009559.md index b2e3c1e6d2..b8524d064f 100644 --- a/md/UBERON/59/UBERON_0009559.md +++ b/md/UBERON/59/UBERON_0009559.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009559 * *Label* = metacarpal/tarsal-phalangeal joint - * *Definition* = A skeletal joint that connects a mesopodium bone and connects a proximal phalanx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a mesopodium bone and connects a proximal phalanx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: We include these joints as being part of the digits; this is consistent with the FMA, and makes classification easier. Note that digit and metapodial regions are part-disjoint ## Synonyms - * metacarpo-tarsophalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * metapodial-phalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * metapodium-phalanx joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * fetlock [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fetlock[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpo-tarsophalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * metapodial-phalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * metapodium-phalanx joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * fetlock [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fetlock, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mesopodium bone](../../UBERON/56/UBERON_0003656.md) and [connects](../../ts/core#connects.md) some [proximal phalanx](../../UBERON/02/UBERON_0004302.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0009659.md b/md/UBERON/59/UBERON_0009659.md index d983c3966e..93b7f25bde 100644 --- a/md/UBERON/59/UBERON_0009659.md +++ b/md/UBERON/59/UBERON_0009659.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009659 * *Label* = spermatic artery - * *Definition* = A branch of the abdominal aorta that supplies oxygenated blood to the testis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Spermatic_Artery] + * *Definition* = A branch of the abdominal aorta that supplies oxygenated blood to the testis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Spermatic_Artery ] * *Comment* = add child terms; consider merging with testicular artery ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0002040 - * UMLS:C0226409 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spermatic_Artery] + * UMLS:C0226409 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spermatic_Artery ] * ncithesaurus:Spermatic_Artery ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0009859.md b/md/UBERON/59/UBERON_0009859.md index fc6e09dd3b..90651c1d04 100644 --- a/md/UBERON/59/UBERON_0009859.md +++ b/md/UBERON/59/UBERON_0009859.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009859 * *Label* = endosteum - * *Definition* = a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endosteum] + * *Definition* = a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endosteum ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:32692 * SCTID:57487002 - * UMLS:C0222658 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endosteum] + * UMLS:C0222658 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endosteum ] * Wikipedia:Endosteum * http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg * ncithesaurus:Endosteum @@ -36,8 +36,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endosteal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0009959.md b/md/UBERON/59/UBERON_0009959.md index 4d2d6ab565..f176fd55cb 100644 --- a/md/UBERON/59/UBERON_0009959.md +++ b/md/UBERON/59/UBERON_0009959.md @@ -6,8 +6,8 @@ ## Synonyms - * oropharyngeal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004556] - * oropharynx lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55095] + * oropharyngeal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004556 ] + * oropharynx lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55095 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [oropharynx](../../UBERON/29/UBERON_0001729.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010059.md b/md/UBERON/59/UBERON_0010059.md index d57d8a589a..528f92a3d2 100644 --- a/md/UBERON/59/UBERON_0010059.md +++ b/md/UBERON/59/UBERON_0010059.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010159.md b/md/UBERON/59/UBERON_0010159.md index ee8de25aea..e7fa4fc40d 100644 --- a/md/UBERON/59/UBERON_0010159.md +++ b/md/UBERON/59/UBERON_0010159.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010159 * *Label* = occipitomastoid suture - * *Definition* = The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitomastoid_suture] + * *Definition* = The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitomastoid_suture ] ## Synonyms - * occipitomastoid suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52934] - * occipito-mastoid suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitomastoid_suture] - * sutura occipitomastoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitomastoid_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sutura occipitomastoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipitomastoid_suture] + * occipitomastoid suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52934 ] + * occipito-mastoid suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitomastoid_suture ] + * sutura occipitomastoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitomastoid_suture ] + * sutura occipitomastoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipitomastoid_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010259.md b/md/UBERON/59/UBERON_0010259.md index f95b4d21c4..65aee55715 100644 --- a/md/UBERON/59/UBERON_0010259.md +++ b/md/UBERON/59/UBERON_0010259.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010259 * *Label* = 1st arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a 1st arch mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchyme derived from neural crest of mesenchyme of 1st arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16129] + * mesenchyme derived from neural crest of mesenchyme of 1st arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16129 ] * neural crest derived arch 1 mesenchyme * pharyngeal arch 1 mesenchyme from neural crest * branchial arch 1 mesenchyme from neural crest @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch mesenchyme](../../UBERON/42/UBERON_0010042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010359.md b/md/UBERON/59/UBERON_0010359.md index ee805ac100..15f3ceb5ab 100644 --- a/md/UBERON/59/UBERON_0010359.md +++ b/md/UBERON/59/UBERON_0010359.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010359 * *Label* = pharyngeal arch mesenchyme from neural crest - * *Definition* = Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a neural crest and is part of a entire pharyngeal arch associated mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Partially implements UBERONREF:0000002 NC meeting scheme ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [entire pharyngeal arch associated mesenchyme](../../UBERON/46/UBERON_0010046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010559.md b/md/UBERON/59/UBERON_0010559.md index 5bf6215587..21f184867a 100644 --- a/md/UBERON/59/UBERON_0010559.md +++ b/md/UBERON/59/UBERON_0010559.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010559 * *Label* = pedal digit 3 metatarsal cartilage element - * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 3 metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe 3 metatarsal cartilage element - * foot digit 3 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 3 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3 mesenchyme](../../UBERON/97/UBERON_0005697.md) and [pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010759.md b/md/UBERON/59/UBERON_0010759.md index a678daa10e..84fac46529 100644 --- a/md/UBERON/59/UBERON_0010759.md +++ b/md/UBERON/59/UBERON_0010759.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010759 * *Label* = equine distal sesamoid - * *Definition* = lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navicular_bone#Horse_anatomy] + * *Definition* = lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navicular_bone#Horse_anatomy ] ## Synonyms * distal sesamoid bone - * navicular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * navicular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0010959.md b/md/UBERON/59/UBERON_0010959.md index a66e3f628a..9e2d04015f 100644 --- a/md/UBERON/59/UBERON_0010959.md +++ b/md/UBERON/59/UBERON_0010959.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010959 * *Label* = craniocervical muscle - * *Definition* = A muscle organ that is part of a craniocervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a craniocervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references - * UMLS:C0448281 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_and_Neck_Muscle] + * UMLS:C0448281 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_and_Neck_Muscle ] * ncithesaurus:Head_and_Neck_Muscle ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0011159.md b/md/UBERON/59/UBERON_0011159.md index fd1089f7b0..9863dffb4e 100644 --- a/md/UBERON/59/UBERON_0011159.md +++ b/md/UBERON/59/UBERON_0011159.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0011359.md b/md/UBERON/59/UBERON_0011359.md index 321c355510..254c840267 100644 --- a/md/UBERON/59/UBERON_0011359.md +++ b/md/UBERON/59/UBERON_0011359.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011359 * *Label* = urophysis - * *Definition* = This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] * *Comment* = Shares characteristics with neurohypophysis ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0011659.md b/md/UBERON/59/UBERON_0011659.md index e6ceab07f0..0cba0db0c0 100644 --- a/md/UBERON/59/UBERON_0011659.md +++ b/md/UBERON/59/UBERON_0011659.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011659 * *Label* = entoplastron - * *Definition* = A median bone at the anterior margin of the plastron. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A median bone at the anterior margin of the plastron. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * interclavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * interclavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0011859.md b/md/UBERON/59/UBERON_0011859.md index 6abcf0bdd9..5e1ec79741 100644 --- a/md/UBERON/59/UBERON_0011859.md +++ b/md/UBERON/59/UBERON_0011859.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011859 * *Label* = internal acoustic meatus - * *Definition* = The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] + * *Definition* = The internal auditory meatus (also internal acoustic meatus, internal auditory canal, and internal acoustic canal) is a canal in the petrous bone of the temporal bone of the skull that carries nerves from inside the cranium towards the middle and inner ear compartments namely cranial nerve VII and cranial nerve VIII. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] * *Comment* = Alternate def: The internal acoustic meatus (or internal auditory meatus ) is an opening on the medial surface of the petrous temporal bone. It is through this passageway that the facial nerve (cranial nerve VII) and vestibulocochlear nerve (cranial nerve VIII) pass to reach their sites of innervation. The vestibulocochlear nerve divides at the internal acoustic meatus to continue as separate vestibular and cochlear components. [MURDOCH:908] ## Synonyms - * internal acoustic canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] - * internal acoustic meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] - * internal auditory canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] - * internal auditory meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] - * porus acusticus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_auditory_meatus] + * internal acoustic canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] + * internal acoustic meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] + * internal auditory canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] + * internal auditory meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] + * porus acusticus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_auditory_meatus ] ## Cross-references * FMA:53163 * SCTID:264484004 - * UMLS:C0149591 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Auditory_Canal_of_Ear] + * UMLS:C0149591 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Auditory_Canal_of_Ear ] * Wikipedia:Internal_auditory_meatus * ncithesaurus:Internal_Auditory_Canal_of_Ear @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0011959.md b/md/UBERON/59/UBERON_0011959.md index 0e2d3cb2b2..32f64e7868 100644 --- a/md/UBERON/59/UBERON_0011959.md +++ b/md/UBERON/59/UBERON_0011959.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011959 * *Label* = glenoid labrum of scapula - * *Definition* = a ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Glenoid_labrum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=47475] + * *Definition* = a ring of fibrocartilage attached to the margin of the glenoid cavity of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Glenoid_labrum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=47475 ] * *Comment* = Consider classifying as 'annulus fibrosus' ## Synonyms * glenoidal labrum of glenohumeral joint * glenoidal labrum of scapula - * labrum glenoidale [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labrum glenoidale [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * glenoid labrum * glenoidal labrum - * labrum glenoidale scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=47475] + * labrum glenoidale scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=47475 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011959 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0012059.md b/md/UBERON/59/UBERON_0012059.md index 85b243b6fc..e59f77e362 100644 --- a/md/UBERON/59/UBERON_0012059.md +++ b/md/UBERON/59/UBERON_0012059.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012059 * *Label* = right lung lower lobe bronchiole - * *Definition* = A bronchiole that is part of a lower lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a lower lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * bronchiole of right cranial lobe * bronchiole of right lower lobe * bronchiole of right lower lobe of lung - * right lung caudal lobe bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004094] + * right lung caudal lobe bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004094 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of right lung](../../UBERON/71/UBERON_0002171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0012359.md b/md/UBERON/59/UBERON_0012359.md index 557abe234e..e7d6af2ab5 100644 --- a/md/UBERON/59/UBERON_0012359.md +++ b/md/UBERON/59/UBERON_0012359.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012359 * *Label* = pedal digitopodium bone - * *Definition* = A bone that is part of a the pedal digitopodium skeleton - i.e. the toes or the metatarsal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a the pedal digitopodium skeleton - i.e. the toes or the metatarsal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digitopodium bone](../../UBERON/57/UBERON_0012357.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012359 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0012459.md b/md/UBERON/59/UBERON_0012459.md index 9f4fd0c3b1..31b83914f1 100644 --- a/md/UBERON/59/UBERON_0012459.md +++ b/md/UBERON/59/UBERON_0012459.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012459 * *Label* = antler pedicle - * *Definition* = attachment point for antler on skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antler#Occurrence_and_function[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicle_(cervidae)] + * *Definition* = attachment point for antler on skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antler#Occurrence_and_function, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicle_(cervidae) ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0013159.md b/md/UBERON/59/UBERON_0013159.md index 61b64dd6e4..45a4c8b6e3 100644 --- a/md/UBERON/59/UBERON_0013159.md +++ b/md/UBERON/59/UBERON_0013159.md @@ -6,7 +6,7 @@ ## Synonyms - * mantle layer epithalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000913] + * mantle layer epithalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000913 ] * mantle layer of epithalamus ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013159 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0013459.md b/md/UBERON/59/UBERON_0013459.md index 3e52f7d6f5..8426fef1fa 100644 --- a/md/UBERON/59/UBERON_0013459.md +++ b/md/UBERON/59/UBERON_0013459.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013459 * *Label* = stephanion - * *Definition* = The point where the upper temporal line cuts the coronal suture is named the stephanion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stephanion] + * *Definition* = The point where the upper temporal line cuts the coronal suture is named the stephanion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stephanion ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0013559.md b/md/UBERON/59/UBERON_0013559.md index e588984a72..b1e708e07e 100644 --- a/md/UBERON/59/UBERON_0013559.md +++ b/md/UBERON/59/UBERON_0013559.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013559 * *Label* = Brodmann (1909) area 28 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_28] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_28 ] ## Synonyms - * B09-28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1759] - * BA28 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1759] - * Brodmann area 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68625] - * Brodmann area 28, entorhinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1759] + * B09-28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1759 ] + * BA28 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1759 ] + * Brodmann area 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68625 ] + * Brodmann area 28, entorhinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1759 ] * area 28 of Brodmann * area 28 of Brodmann (crosby) - * area 28 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1759] - * area entorhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1759] - * area entorhinalis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_28[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1759[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 28 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1030] + * area 28 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1759 ] + * area entorhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1759 ] + * area entorhinalis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_28, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1759, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 28 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1030 ] ## Cross-references * FMA:68625 * NIF_GrossAnatomy:birnlex_1759 - * NeuroNames:1030 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1759] - * UMLS:C0598377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1759] + * NeuroNames:1030 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1759 ] + * UMLS:C0598377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1759 ] * Wikipedia:Brodmann_area_28 * http://upload.wikimedia.org/wikipedia/commons/7/76/Brodmann_Cytoarchitectonics_28.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0013659.md b/md/UBERON/59/UBERON_0013659.md index 197ee7ae15..ae8cdee8f8 100644 --- a/md/UBERON/59/UBERON_0013659.md +++ b/md/UBERON/59/UBERON_0013659.md @@ -20,15 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [erectile tissue](../../UBERON/24/UBERON_0008324.md) and [part_of](../../BFO/50/BFO_0000050.md) some [corpus cavernosum maxillaris](../../UBERON/58/UBERON_0013658.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013659 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0013759.md b/md/UBERON/59/UBERON_0013759.md index bdfef8c381..f362790dca 100644 --- a/md/UBERON/59/UBERON_0013759.md +++ b/md/UBERON/59/UBERON_0013759.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013759 * *Label* = internal cervical os - * *Definition* = Opening of uterine cervix into the body of the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Opening of uterine cervix into the body of the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * internal orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_orifice_of_the_uterus] - * internal os [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17747] - * internal os [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_orifice_of_the_uterus] + * internal orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_orifice_of_the_uterus ] + * internal os [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17747 ] + * internal os [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_orifice_of_the_uterus ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The internal orifice of the uterus (or internal orifice of the cervix uteri or internal os) is an interior narrowing of the uterine cavity. It corresponds to a slight constriction known as the isthmus that can be observed on the surface of the uterus about midway between the apex and base[Wikipedia:Internal_orifice_of_the_uterus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0014459.md b/md/UBERON/59/UBERON_0014459.md index e746f16fe5..ed6b3926ef 100644 --- a/md/UBERON/59/UBERON_0014459.md +++ b/md/UBERON/59/UBERON_0014459.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014459 * *Label* = temporal fenestra - * *Definition* = One of two bilaterally symmetrical holes (fenestrae) in the temporal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Temporal_fenestra#Temporal_fenestrae] + * *Definition* = One of two bilaterally symmetrical holes (fenestrae) in the temporal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Temporal_fenestra#Temporal_fenestrae ] ## Synonyms - * temporal fenestrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * temporal fenestrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fenestra](../../UBERON/05/UBERON_0004705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [temporal bone](../../UBERON/78/UBERON_0001678.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014459 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0014559.md b/md/UBERON/59/UBERON_0014559.md index 0b73f092c2..4e53eb02f5 100644 --- a/md/UBERON/59/UBERON_0014559.md +++ b/md/UBERON/59/UBERON_0014559.md @@ -6,8 +6,8 @@ ## Synonyms - * CA3 part of stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * CA3 stratum lacunosum moleculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4125] + * CA3 part of stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * CA3 stratum lacunosum moleculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4125 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum lacunosum moleculare](../../UBERON/40/UBERON_0007640.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014559 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0014759.md b/md/UBERON/59/UBERON_0014759.md index f75b16a60d..7950987be9 100644 --- a/md/UBERON/59/UBERON_0014759.md +++ b/md/UBERON/59/UBERON_0014759.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014759 * *Label* = entopallium - * *Definition* = The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16041718] + * *Definition* = The major telecephalic thalamorecipient zone of the tectofugal visual system in Aves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16041718 ] ## Synonyms - * E [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16041718[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * core region of ectostriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14681937] + * E [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16041718, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * core region of ectostriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14681937 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014759 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0014859.md b/md/UBERON/59/UBERON_0014859.md index c5340bdd88..f77d2519bd 100644 --- a/md/UBERON/59/UBERON_0014859.md +++ b/md/UBERON/59/UBERON_0014859.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014859 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_0015059.md b/md/UBERON/59/UBERON_0015059.md index 9c33f38925..8ba70c5ddb 100644 --- a/md/UBERON/59/UBERON_0015059.md +++ b/md/UBERON/59/UBERON_0015059.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015059 * *Label* = orbitosphenoid endochondral element - * *Definition* = A orbitosphenoid bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A orbitosphenoid bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * orbitosphenoid element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * orbitosphenoid skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * orbitosphenoid element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * orbitosphenoid skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [orbitosphenoid cartilage element](../../UBERON/87/UBERON_0005687.md)or[orbitosphenoid](../../UBERON/78/UBERON_0002478.md)or[sphenoid lesser wing pre-cartilage condensation](../../UBERON/28/UBERON_0010728.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015059 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2000259.md b/md/UBERON/59/UBERON_2000259.md index 40837c6d13..3e24561269 100644 --- a/md/UBERON/59/UBERON_2000259.md +++ b/md/UBERON/59/UBERON_2000259.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000259 * *Label* = mandibular lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2000459.md b/md/UBERON/59/UBERON_2000459.md index 9308e63427..9acbdc5535 100644 --- a/md/UBERON/59/UBERON_2000459.md +++ b/md/UBERON/59/UBERON_2000459.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2000759.md b/md/UBERON/59/UBERON_2000759.md index 46bbf5fd81..5bbb6b09ab 100644 --- a/md/UBERON/59/UBERON_2000759.md +++ b/md/UBERON/59/UBERON_2000759.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000759[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000759, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_2000859.md b/md/UBERON/59/UBERON_2000859.md index b1edf1f6ef..876b6a9774 100644 --- a/md/UBERON/59/UBERON_2000859.md +++ b/md/UBERON/59/UBERON_2000859.md @@ -6,10 +6,10 @@ ## Synonyms - * ha(pu) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000859] - * hemal arches (preural) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-011008-1] - * specialized haemal arch and spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000859] - * specialized hemal arches and spines [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000859[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ha(pu) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000859 ] + * hemal arches (preural) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-011008-1 ] + * specialized haemal arch and spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000859 ] + * specialized hemal arches and spines [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000859, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2000959.md b/md/UBERON/59/UBERON_2000959.md index 9b7891cfcb..aca76bc12f 100644 --- a/md/UBERON/59/UBERON_2000959.md +++ b/md/UBERON/59/UBERON_2000959.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000959 * *Label* = sclerotome somite 26 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001059.md b/md/UBERON/59/UBERON_2001059.md index 46dd0fb271..637587744d 100644 --- a/md/UBERON/59/UBERON_2001059.md +++ b/md/UBERON/59/UBERON_2001059.md @@ -6,8 +6,8 @@ ## Synonyms - * CrDI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001059] - * rostral division of the internal carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001059] + * CrDI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001059 ] + * rostral division of the internal carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001059 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001259.md b/md/UBERON/59/UBERON_2001259.md index 435fa8e4e7..47540176ee 100644 --- a/md/UBERON/59/UBERON_2001259.md +++ b/md/UBERON/59/UBERON_2001259.md @@ -6,8 +6,8 @@ ## Synonyms - * forebrain vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001259] - * prosencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001259] + * forebrain vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001259 ] + * prosencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001259 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0006284 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was obsoleted as it was discovered to be equivalent to an existing class * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_2001359.md b/md/UBERON/59/UBERON_2001359.md index 44219a6139..8ca730faed 100644 --- a/md/UBERON/59/UBERON_2001359.md +++ b/md/UBERON/59/UBERON_2001359.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001659.md b/md/UBERON/59/UBERON_2001659.md index 6e8f317d8a..a951e3ea17 100644 --- a/md/UBERON/59/UBERON_2001659.md +++ b/md/UBERON/59/UBERON_2001659.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001659 * *Label* = upper pharyngeal tooth - * *Definition* = Tooth that is attached to the upper pharyngeal tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the upper pharyngeal tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001759.md b/md/UBERON/59/UBERON_2001759.md index 4fa6da29a9..bfb2d31f0b 100644 --- a/md/UBERON/59/UBERON_2001759.md +++ b/md/UBERON/59/UBERON_2001759.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001859.md b/md/UBERON/59/UBERON_2001859.md index 3212cb9161..d53517323f 100644 --- a/md/UBERON/59/UBERON_2001859.md +++ b/md/UBERON/59/UBERON_2001859.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001859 * *Label* = pharyngobranchial 1 tooth plate - * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pharyngobranchial 1 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001859] + * pharyngobranchial 1 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001859 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2001959.md b/md/UBERON/59/UBERON_2001959.md index 39159f8723..237d4162c7 100644 --- a/md/UBERON/59/UBERON_2001959.md +++ b/md/UBERON/59/UBERON_2001959.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001959 * *Label* = ceratobranchial 4 bone proximal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ceratobranchial 4 bone anterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001959] - * ceratobranchial 4 bone mesial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001959] + * ceratobranchial 4 bone anterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001959 ] + * ceratobranchial 4 bone mesial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001959 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2002059.md b/md/UBERON/59/UBERON_2002059.md index e6cbbcfa3f..05c33cd7e6 100644 --- a/md/UBERON/59/UBERON_2002059.md +++ b/md/UBERON/59/UBERON_2002059.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [actinopterygian parietal bone](../../UBERON/65/UBERON_0004865.md) and [core#connects](../../ts/core#connects.md) some [posttemporal](../../UBERON/49/UBERON_2000549.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2002159.md b/md/UBERON/59/UBERON_2002159.md index cabe571a99..1f0bc55a54 100644 --- a/md/UBERON/59/UBERON_2002159.md +++ b/md/UBERON/59/UBERON_2002159.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002159 * *Label* = caudal basal fulcrum - * *Definition* = Basal fulcrum that precedes a caudal fin lobe. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Basal fulcrum that precedes a caudal fin lobe. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Caudal basal fulcra precede the bases of both lobes of the caudal fin or only the dorsal one in basal teleosts. Most teleosts lack basal fulcra on the caudal fin. For additional information on basal fulcra see Arratia (2008, 2009). ## Synonyms - * caudal basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002159[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * caudal basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002159, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2005259.md b/md/UBERON/59/UBERON_2005259.md index 3febcb6362..ae6522bd0c 100644 --- a/md/UBERON/59/UBERON_2005259.md +++ b/md/UBERON/59/UBERON_2005259.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005259 * *Label* = continuous capillary - * *Definition* = Capillary that has endothelial cells that provide an uninterrupted lining, and only allow small molecules, like water and ions to diffuse through tight junctions which leave gaps of unjoined membrane which are called intercellular clefts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary#Types] + * *Definition* = Capillary that has endothelial cells that provide an uninterrupted lining, and only allow small molecules, like water and ions to diffuse through tight junctions which leave gaps of unjoined membrane which are called intercellular clefts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary#Types ] ## Synonyms - * continuous blood vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005259] - * continuous capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63195] + * continuous blood vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005259 ] + * continuous capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63195 ] * continuous blood vessel endothelium * continuous endothelium @@ -16,7 +16,7 @@ * FMA:63195 * TAO:0005259 - * UMLS:C1179614 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Continuous_Capillary] + * UMLS:C1179614 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Continuous_Capillary ] * Wikipedia:Capillary#Types * ZFA:0005259 * ncithesaurus:Continuous_Capillary @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Blood vessel endothelium that has tight junctions between the endothelial cells[ZFA]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2005259 + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_2007059.md b/md/UBERON/59/UBERON_2007059.md index fa420f784f..9b5ec9a30f 100644 --- a/md/UBERON/59/UBERON_2007059.md +++ b/md/UBERON/59/UBERON_2007059.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000059.md b/md/UBERON/59/UBERON_3000059.md index 96a1684f57..f277664391 100644 --- a/md/UBERON/59/UBERON_3000059.md +++ b/md/UBERON/59/UBERON_3000059.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000059 * *Label* = capsular process - * *Definition* = Narrow process of the skeletal support that projects forward. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Narrow process of the skeletal support that projects forward. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000259.md b/md/UBERON/59/UBERON_3000259.md index 767fb878e6..b63e895b78 100644 --- a/md/UBERON/59/UBERON_3000259.md +++ b/md/UBERON/59/UBERON_3000259.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000259 * *Label* = lamina inferior - * *Definition* = Lateral expansion of the crista intermedia that serves as the floor of the cavum medium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral expansion of the crista intermedia that serves as the floor of the cavum medium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * lamina inferior cristae intermediae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000259] + * lamina inferior cristae intermediae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000259 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000459.md b/md/UBERON/59/UBERON_3000459.md index b133262323..0771332e7b 100644 --- a/md/UBERON/59/UBERON_3000459.md +++ b/md/UBERON/59/UBERON_3000459.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000459 * *Label* = prearticular coronoid process - * *Definition* = Point of insertion of the masticatory musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Point of insertion of the masticatory musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000659.md b/md/UBERON/59/UBERON_3000659.md index de3f33d524..185ddaea53 100644 --- a/md/UBERON/59/UBERON_3000659.md +++ b/md/UBERON/59/UBERON_3000659.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000659 * *Label* = postchoanal process - * *Definition* = Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus choanalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000659] + * processus choanalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000659 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000759.md b/md/UBERON/59/UBERON_3000759.md index 8343c76590..f3d8c8ee3c 100644 --- a/md/UBERON/59/UBERON_3000759.md +++ b/md/UBERON/59/UBERON_3000759.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000759 * *Label* = omosternum - * *Definition* = Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Proximal portion of the prezonal element of the pectoral girdle. It may be a flat, midventral cartilaginous structure or a calcified or bony element elaborated into a stylum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * episternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000759] - * interclavicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000759] - * prezonal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000759] - * prezonal sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000759] - * sternum superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000759] + * episternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000759 ] + * interclavicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000759 ] + * prezonal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000759 ] + * prezonal sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000759 ] + * sternum superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000759 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3000859.md b/md/UBERON/59/UBERON_3000859.md index 3b95820b6b..d5cf074cea 100644 --- a/md/UBERON/59/UBERON_3000859.md +++ b/md/UBERON/59/UBERON_3000859.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000859 * *Label* = foramen perforans carpi - * *Definition* = Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3010159.md b/md/UBERON/59/UBERON_3010159.md index b9c91c0083..55207532bf 100644 --- a/md/UBERON/59/UBERON_3010159.md +++ b/md/UBERON/59/UBERON_3010159.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000207 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/59/UBERON_3010259.md b/md/UBERON/59/UBERON_3010259.md index f9c7045cd7..851c0b7e8d 100644 --- a/md/UBERON/59/UBERON_3010259.md +++ b/md/UBERON/59/UBERON_3010259.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010259 * *Label* = phallodeum - * *Definition* = Eversible phalloid portion of the cloaca that is inserted in the female's vent during copulation. Found in male Caecillians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0002-6601-2165] + * *Definition* = Eversible phalloid portion of the cloaca that is inserted in the female's vent during copulation. Found in male Caecillians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3010559.md b/md/UBERON/59/UBERON_3010559.md index ab96853753..57d4a0e403 100644 --- a/md/UBERON/59/UBERON_3010559.md +++ b/md/UBERON/59/UBERON_3010559.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3010659.md b/md/UBERON/59/UBERON_3010659.md index 3f67c39bfa..db18ff5aef 100644 --- a/md/UBERON/59/UBERON_3010659.md +++ b/md/UBERON/59/UBERON_3010659.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010659 * *Label* = subarcualis rectus I - * *Definition* = Deep, visceral muscle associated with tongue movement. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Deep, visceral muscle associated with tongue movement. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_3010759.md b/md/UBERON/59/UBERON_3010759.md index 368eb6931a..ecac805c95 100644 --- a/md/UBERON/59/UBERON_3010759.md +++ b/md/UBERON/59/UBERON_3010759.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010759 * *Label* = ramus buccal - * *Definition* = Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Ventral ramus of the ADLLN that innervates the infraorbital line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_4000059.md b/md/UBERON/59/UBERON_4000059.md index e711eb8170..ce1c478292 100644 --- a/md/UBERON/59/UBERON_4000059.md +++ b/md/UBERON/59/UBERON_4000059.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000059 * *Label* = avascular GAG-rich matrix - * *Definition* = Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Proteinaceous extracellular matrix that is avascular and consists primarily of glycosaminoglycans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * avascular glycosaminoglycan-rich matrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * cartilage matrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * cartilage-like matrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * avascular glycosaminoglycan-rich matrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * cartilage matrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * cartilage-like matrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_4000159.md b/md/UBERON/59/UBERON_4000159.md index 49c8009515..9eed4d7e57 100644 --- a/md/UBERON/59/UBERON_4000159.md +++ b/md/UBERON/59/UBERON_4000159.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000159 * *Label* = ossified ligament - * *Definition* = Sesamoid that develops within a ligament, distal to an articulation or joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000169] + * *Definition* = Sesamoid that develops within a ligament, distal to an articulation or joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000169 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/59/UBERON_4200159.md b/md/UBERON/59/UBERON_4200159.md index 74108695fc..9ebf15639c 100644 --- a/md/UBERON/59/UBERON_4200159.md +++ b/md/UBERON/59/UBERON_4200159.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0000060.md b/md/UBERON/60/UBERON_0000060.md index dfa0328e33..da571de247 100644 --- a/md/UBERON/60/UBERON_0000060.md +++ b/md/UBERON/60/UBERON_0000060.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000060 * *Label* = anatomical wall - * *Definition* = Organ component adjacent to an organ cavity and which consists of a maximal aggregate of organ component layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82482] + * *Definition* = Organ component adjacent to an organ cavity and which consists of a maximal aggregate of organ component layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82482 ] * *Comment* = AO notes: in FMA, serosa is a wall ## Synonyms - * wall of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82482] + * wall of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82482 ] * wall - * organ wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82482] + * organ wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82482 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009915 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0000160.md b/md/UBERON/60/UBERON_0000160.md index 313f5a5f2b..57d4ddbe46 100644 --- a/md/UBERON/60/UBERON_0000160.md +++ b/md/UBERON/60/UBERON_0000160.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000160 * *Label* = intestine - * *Definition* = Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:GO[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intestine] + * *Definition* = Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:GO, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intestine ] * *Comment* = MA also has a class MA:0001524 bowel, not clear how this is different. Usage notes: this class is currently very general, encompassing the C elegans 'intestine', which is a tube of epithelial cells extending from the 'pharynx' to 'rectum'. Taxon notes: [in zebrafish] No stomach, small intestine, or large intestine can be distinguished. However, differences can be found in the morphology of the mucosa columnar epithelial cells and the number of goblet cells, suggesting functional differentiation. The intestine has numerous folds that become progressively shorter in a rostral-to-caudal direction. Proportionally, these folds are significantly larger than the finger-like intestinal villi of mammals and other amniotes (Wallace et al. 2005). Columnar-shaped absorptive enterocytes are the most numerous in the zebrafish intestinal epithelium. Goblet cells are the second most populous epithelial cell type. ## Synonyms @@ -28,7 +28,7 @@ * MIAA:0000043 * SCTID:256876008 * TAO:0001338 - * UMLS:C0021853 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestine] + * UMLS:C0021853 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestine ] * VHOG:0000056 * WBbt:0005772 * Wikipedia:Intestine @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tract of the alimentary canal. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = intestinal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0000360.md b/md/UBERON/60/UBERON_0000360.md index d7f4ae0d91..f5849206a8 100644 --- a/md/UBERON/60/UBERON_0000360.md +++ b/md/UBERON/60/UBERON_0000360.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0004758 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0004759 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0004760 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000360 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_0000460.md b/md/UBERON/60/UBERON_0000460.md index 8d820c7e3d..f6e0cc97cc 100644 --- a/md/UBERON/60/UBERON_0000460.md +++ b/md/UBERON/60/UBERON_0000460.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000460 * *Label* = major vestibular gland - * *Definition* = Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bartholin's_gland] + * *Definition* = Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bartholin's_gland ] ## Synonyms - * Bartholin's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9598] - * Tiedemann's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9598] - * vulvovaginal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9598] - * Duverney's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9598] - * glandula vestibularis major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003115] - * greater vestibular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002936] - * greater vestibular glands of bartholin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bartholin%27s_gland] + * Bartholin's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9598 ] + * Tiedemann's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9598 ] + * vulvovaginal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9598 ] + * Duverney's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9598 ] + * glandula vestibularis major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003115 ] + * greater vestibular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002936 ] + * greater vestibular glands of bartholin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bartholin%27s_gland ] ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0002366 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0000960.md b/md/UBERON/60/UBERON_0000960.md index c56df4d217..87cac3b4f0 100644 --- a/md/UBERON/60/UBERON_0000960.md +++ b/md/UBERON/60/UBERON_0000960.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000960 * *Label* = obsolete pharyngeal nerve - * *Definition* = OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_nerve] + * *Definition* = OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_nerve ] ## Synonyms @@ -31,9 +31,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004021 * *[consider](../../er/oboInOwl#consider.md)* = FMA:77524 * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005441 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000960 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_0001160.md b/md/UBERON/60/UBERON_0001160.md index 2f69caf1af..ae41f57b0a 100644 --- a/md/UBERON/60/UBERON_0001160.md +++ b/md/UBERON/60/UBERON_0001160.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001160 * *Label* = fundus of stomach - * *Definition* = The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0014825[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_%28stomach%29] + * *Definition* = The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0014825, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_%28stomach%29 ] ## Synonyms * fundus gastricus (ventricularis) * gastric fundus * stomach fundus - * fundus gastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000502] - * fundus gastricus ventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000502] - * fundus ventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000502] - * fundus ventriculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000502] + * fundus gastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000502 ] + * fundus gastricus ventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000502 ] + * fundus ventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000502 ] + * fundus ventriculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000502 ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0001612 * MESH:A03.492.766.419 * SCTID:362139007 - * UMLS:C0017129 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fundus_of_the_Stomach] + * UMLS:C0017129 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fundus_of_the_Stomach ] * VHOG:0000421 * Wikipedia:Fundus_%28stomach%29 * galen:GastricFundus @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The greater curvature of the stomach. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001260.md b/md/UBERON/60/UBERON_0001260.md index 8226824152..21dce40c65 100644 --- a/md/UBERON/60/UBERON_0001260.md +++ b/md/UBERON/60/UBERON_0001260.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001260 * *Label* = serosa of urinary bladder - * *Definition* = A serous membrane that is part of a urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check serosa/peritoneum ## Synonyms * bladder serosa - * bladder serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serosa of bladder * serous coat of bladder * serous coat of urinary bladder - * serous membrane of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica serosa (vesica urinaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15932[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica serosa vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15932[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * serous membrane of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica serosa (vesica urinaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15932, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica serosa vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15932, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * urinary bladder serosa - * urinary bladder serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urinary bladder serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * visceral peritoneum of urinary bladder ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001360.md b/md/UBERON/60/UBERON_0001360.md index 4b86019213..0a1b825af0 100644 --- a/md/UBERON/60/UBERON_0001360.md +++ b/md/UBERON/60/UBERON_0001360.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001360 * *Label* = deep circumflex iliac vein - * *Definition* = The deep circumflex iliac vein is formed by the union of the ven comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_vein] + * *Definition* = The deep circumflex iliac vein is formed by the union of the ven comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * deep iliac circumflex vein * vena circumflexa iliaca profunda - * vena circumflexa ilium profunda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_circumflex_iliac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena circumflexa ilium profunda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_circumflex_iliac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001460.md b/md/UBERON/60/UBERON_0001460.md index 55cb970882..af4cd232ba 100644 --- a/md/UBERON/60/UBERON_0001460.md +++ b/md/UBERON/60/UBERON_0001460.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001460 * *Label* = arm - * *Definition* = The part of the forelimb extending from the shoulder to the autopod[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arm] + * *Definition* = The part of the forelimb extending from the shoulder to the autopod[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arm ] * *Comment* = This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm. Editor note: currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand ## Synonyms - * brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.378.800] + * brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.378.800 ] ## Cross-references @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001560.md b/md/UBERON/60/UBERON_0001560.md index 1de9f6b583..d51ed9a7f9 100644 --- a/md/UBERON/60/UBERON_0001560.md +++ b/md/UBERON/60/UBERON_0001560.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001660.md b/md/UBERON/60/UBERON_0001660.md index 14cb118eb5..27e48d1152 100644 --- a/md/UBERON/60/UBERON_0001660.md +++ b/md/UBERON/60/UBERON_0001660.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001660 * *Label* = maxillary vein - * *Definition* = The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_vein] + * *Definition* = The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_vein ] * *Comment* = Taxon notes: in horses, a branch of the external jugular gives off the occipital and caudal auricular vein ## Synonyms @@ -15,7 +15,7 @@ * MA:0002169 * OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA * SCTID:29972009 - * UMLS:C0226524 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Maxillary_Vein] + * UMLS:C0226524 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Maxillary_Vein ] * Wikipedia:Maxillary_vein * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png * ncithesaurus:Internal_Maxillary_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001760.md b/md/UBERON/60/UBERON_0001760.md index f4a999e95b..0d3476c226 100644 --- a/md/UBERON/60/UBERON_0001760.md +++ b/md/UBERON/60/UBERON_0001760.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001760 * *Label* = frontal sinus - * *Definition* = The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus. . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:753[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_sinus] + * *Definition* = The frontal sinus occupies the dorsal part of the skull medial to the orbit. It overlaps cranial and nasal cavities and is often referred to as the conchofrontal sinus. . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:753, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_sinus ] * *Comment* = Taxon notes: A unique feature in the horse is that the frontal sinus communicates with the caudal maxillary sinus via the frontomaxillary opening[MURDOCh] ## Synonyms - * cavity of frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57417] - * sinus frontales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavity of frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57417 ] + * sinus frontales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A04.531.621.387 * OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA * SCTID:181205008 - * UMLS:C0016734 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Sinus] + * UMLS:C0016734 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Sinus ] * Wikipedia:Frontal_sinus * http://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001860.md b/md/UBERON/60/UBERON_0001860.md index faabffecc8..f93b193540 100644 --- a/md/UBERON/60/UBERON_0001860.md +++ b/md/UBERON/60/UBERON_0001860.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001860 * *Label* = endolymphatic duct - * *Definition* = From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymphatic_duct] + * *Definition* = From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymphatic_duct ] ## Synonyms - * ductus endolymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000135[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ductus endolymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endolymphatic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus endolymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000135, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ductus endolymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endolymphatic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endoymphatic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0001960.md b/md/UBERON/60/UBERON_0001960.md index 3e3afa48e2..c5f89c1720 100644 --- a/md/UBERON/60/UBERON_0001960.md +++ b/md/UBERON/60/UBERON_0001960.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001960 * *Label* = periarterial lymphatic sheath - * *Definition* = the area of the spleen in which T cells surround the central arteriole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002358] + * *Definition* = the area of the spleen in which T cells surround the central arteriole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002358 ] * *Comment* = AO notes: FMA distinguishes periarterial (PALS) from periarteriolar (FMA:62806) ## Synonyms - * PALS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002358] - * T cell domain of the splenic white pulp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002358] + * PALS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002358 ] + * T cell domain of the splenic white pulp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002358 ] * periarterial lymphoid sheath - * periarteriolar sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002358] + * periarteriolar sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002358 ] * spleen periarteriolar lymphatic sheath - * splenic periarteriolar lymphoid sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002358] + * splenic periarteriolar lymphoid sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002358 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [T cell domain](../../UBERON/93/UBERON_0010393.md) and [part_of](../../BFO/50/BFO_0000050.md) some [white pulp of spleen](../../UBERON/59/UBERON_0001959.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002060.md b/md/UBERON/60/UBERON_0002060.md index 12199af731..59a09c577d 100644 --- a/md/UBERON/60/UBERON_0002060.md +++ b/md/UBERON/60/UBERON_0002060.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002060 * *Label* = femoral artery - * *Definition* = The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_artery] + * *Definition* = The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria femoralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria femoralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.351 * OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA * SCTID:244332003 - * UMLS:C0015801 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Femoral_Artery] + * UMLS:C0015801 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Femoral_Artery ] * Wikipedia:Femoral_artery * galen:FemoralArtery * http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery which supplies blood via branches to the hindlimbs.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002160.md b/md/UBERON/60/UBERON_0002160.md index 6ee79286bb..6431696061 100644 --- a/md/UBERON/60/UBERON_0002160.md +++ b/md/UBERON/60/UBERON_0002160.md @@ -7,14 +7,14 @@ ## Synonyms - * nucleus praepositus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2652] + * nucleus praepositus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2652 ] * prepositus hypoglossal nucleus * prepositus nucleus - * PrP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus praepositus hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:758[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus prepositus hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:758[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * PrP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus praepositus hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:758, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus prepositus hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:758, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nucleus prepositus hypoglossus - * prepositus nucleus (Marburg) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:758] + * prepositus nucleus (Marburg) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:758 ] ## Cross-references @@ -25,10 +25,10 @@ * FMA:72596 * MA:0001023 * NIF_GrossAnatomy:birnlex_2652 - * NeuroNames:758 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2652] + * NeuroNames:758 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2652 ] * SCTID:369078009 - * UMLS:C0152399 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2652] - * UMLS:C1289505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2652] + * UMLS:C0152399 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2652 ] + * UMLS:C1289505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2652 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002260.md b/md/UBERON/60/UBERON_0002260.md index fead669b36..96a1db0f87 100644 --- a/md/UBERON/60/UBERON_0002260.md +++ b/md/UBERON/60/UBERON_0002260.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002260 * *Label* = ventral root of spinal cord - * *Definition* = The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090209] + * *Definition* = The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090209 ] * *Comment* = FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence. ## Synonyms - * anterior spinal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000865] + * anterior spinal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000865 ] * ventral spinal root - * ventral root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090209] - * anterior nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_root_of_spinal_nerve] - * anterior root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_root_of_spinal_nerve] - * anterior root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] - * motor root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] - * motor spinal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000865] - * radix anterior (nervus spinalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] - * radix anterior nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_root_of_spinal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radix motoria (nervus spinalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] - * root motoria nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000865] - * root ventralis nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000865] + * ventral root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090209 ] + * anterior nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_root_of_spinal_nerve ] + * anterior root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_root_of_spinal_nerve ] + * anterior root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] + * motor root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] + * motor spinal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000865 ] + * radix anterior (nervus spinalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] + * radix anterior nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_root_of_spinal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radix motoria (nervus spinalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] + * root motoria nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000865 ] + * root ventralis nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000865 ] * spinal nerve ventral root - * ventral root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] - * ventral roots [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:vrt] - * ventral spinal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5979] + * ventral root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] + * ventral roots [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:vrt ] + * ventral spinal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5979 ] ## Cross-references @@ -36,7 +36,7 @@ * NIF_GrossAnatomy:nlx_anat_20090209 * NeuroNames:2620 * TAO:0000705 - * UMLS:C0205956 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventral_Nerve_Root] + * UMLS:C0205956 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventral_Nerve_Root ] * Wikipedia:Anterior_root_of_spinal_nerve * ZFA:0000705 * http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg @@ -61,8 +61,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002360.md b/md/UBERON/60/UBERON_0002360.md index c681d11ddc..0f3804f703 100644 --- a/md/UBERON/60/UBERON_0002360.md +++ b/md/UBERON/60/UBERON_0002360.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002360 * *Label* = meninx - * *Definition* = Membrane organ that surrounds the brain and the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9589[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meninx[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.shsu.edu/~bio_mlt/Chap15.html] + * *Definition* = Membrane organ that surrounds the brain and the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9589, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meninx, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.shsu.edu/~bio_mlt/Chap15.html ] * *Comment* = Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges. Also consider a new class for primary/primitive meninx. AO notes: Not consider part of the CNS/neuraxis in FMA. Taxon notes: Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). ## Synonyms * layer of meninges * meningeal layer - * meninx primitiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001295] + * meninx primitiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001295 ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:nlx_anat_090204 * OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA * TAO:0001355 - * UMLS:C0025285 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Meninges] + * UMLS:C0025285 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Meninges ] * VHOG:0001295 * Wikipedia:Meninx * ZFA:0001355 @@ -59,8 +59,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = meningeal * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76821 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002460.md b/md/UBERON/60/UBERON_0002460.md index 1aba574e5d..f8a7169f20 100644 --- a/md/UBERON/60/UBERON_0002460.md +++ b/md/UBERON/60/UBERON_0002460.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002460 * *Label* = vesical vein - * *Definition* = The vesical veins are veins in the pelvis that drain blood from the urinary bladder. The vesical veins receive blood from the vesical venous plexus and are tributaries of the internal iliac veins. [WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesical_veins] + * *Definition* = The vesical veins are veins in the pelvis that drain blood from the urinary bladder. The vesical veins receive blood from the vesical venous plexus and are tributaries of the internal iliac veins. [WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesical_veins ] ## Synonyms - * venae vesicales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70911[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesical veins [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * venae vesicales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70911, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesical veins [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * vesical veins set ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_70911 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002560.md b/md/UBERON/60/UBERON_0002560.md index 0358081ff1..67061a44e3 100644 --- a/md/UBERON/60/UBERON_0002560.md +++ b/md/UBERON/60/UBERON_0002560.md @@ -6,8 +6,8 @@ ## Synonyms - * facies supratemporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74891] - * operculum temporale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Operculum_%28brain%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * facies supratemporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74891 ] + * operculum temporale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Operculum_%28brain%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,9 +15,9 @@ * BAMS:top * FMA:74891 * NIF_GrossAnatomy:birnlex_1025 - * NeuroNames:127 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1025] + * NeuroNames:127 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1025 ] * SCTID:369222001 - * UMLS:C0149551 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1025] + * UMLS:C0149551 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1025 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002660.md b/md/UBERON/60/UBERON_0002660.md index 910dbf2869..25b77d873b 100644 --- a/md/UBERON/60/UBERON_0002660.md +++ b/md/UBERON/60/UBERON_0002660.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002660 * *Label* = medial longitudinal fasciculus of midbrain - * *Definition* = A medial longitudinal fasciculus that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial longitudinal fasciculus that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mlfmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1302[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus longitudinalis medialis (mesencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:526[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial longitudinal fasciculus of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:526] + * midbrain medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mlfmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1302, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus longitudinalis medialis (mesencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:526, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial longitudinal fasciculus of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:526 ] ## Cross-references * BAMS:mlfmb * FMA:72454 * NIF_GrossAnatomy:birnlex_1302 - * NeuroNames:526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1302] - * UMLS:C0262284 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1302] + * NeuroNames:526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1302 ] + * UMLS:C0262284 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1302 ] ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial longitudinal fasciculus](../../UBERON/09/UBERON_0002309.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002760.md b/md/UBERON/60/UBERON_0002760.md index ab211fc790..b60932a4a1 100644 --- a/md/UBERON/60/UBERON_0002760.md +++ b/md/UBERON/60/UBERON_0002760.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002760 * *Label* = ventral corticospinal tract - * *Definition* = The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_corticospinal_tract] + * *Definition* = The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_corticospinal_tract ] ## Synonyms - * anterior corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72636] - * anterior pyramidal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72636] - * anterior tract of turck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72636] - * bundle of Turck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72636] - * column of Turck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72636] - * anterior cerebrospinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * anterior corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * anterior corticospinal tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:802] - * bundle of Turck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * corticospinal tract, uncrossed [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * direct corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * medial corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * tractus corticospinalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:802[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus corticospinalis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:802[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uncrossed corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] - * ventral corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2955] + * anterior corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72636 ] + * anterior pyramidal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72636 ] + * anterior tract of turck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72636 ] + * bundle of Turck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72636 ] + * column of Turck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72636 ] + * anterior cerebrospinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * anterior corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * anterior corticospinal tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:802 ] + * bundle of Turck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * corticospinal tract, uncrossed [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * direct corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * medial corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * tractus corticospinalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:802, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus corticospinalis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:802, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uncrossed corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] + * ventral corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2955 ] ## Cross-references * BAMS:vcsp * FMA:72636 * NIF_GrossAnatomy:birnlex_1618 - * NeuroNames:802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1618] + * NeuroNames:802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1618 ] * SCTID:369092003 - * UMLS:C0152403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1618] + * UMLS:C0152403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1618 ] * Wikipedia:Ventral_corticospinal_tract * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png @@ -44,7 +44,7 @@ * [axon tract](../../UBERON/18/UBERON_0001018.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter](../../UBERON/16/UBERON_0002316.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pyramidal tract](../../UBERON/07/UBERON_0002707.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Equivalencies @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002860.md b/md/UBERON/60/UBERON_0002860.md index 625b10e96b..919cb2e4d8 100644 --- a/md/UBERON/60/UBERON_0002860.md +++ b/md/UBERON/60/UBERON_0002860.md @@ -6,15 +6,15 @@ ## Synonyms - * first sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6342] - * first sacral spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6342] + * first sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6342 ] + * first sacral spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6342 ] ## Cross-references * EMAPA:25170 * FMA:6342 * NIF_GrossAnatomy:birnlex_2628 - * UMLS:C0501720 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2628] + * UMLS:C0501720 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2628 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0002960.md b/md/UBERON/60/UBERON_0002960.md index 405f3a0611..9fc7b672c8 100644 --- a/md/UBERON/60/UBERON_0002960.md +++ b/md/UBERON/60/UBERON_0002960.md @@ -8,20 +8,20 @@ * central nucleus of perlia * nucleus of perlia - * spitzka's nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72425] - * C3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_786[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * C3 adrenaline cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:C3] - * lamina C3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:C3] - * nucleus nervi oculomotorii centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:499[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * perlia nucleus of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:499] + * spitzka's nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72425 ] + * C3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_786, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * C3 adrenaline cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:C3 ] + * lamina C3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:C3 ] + * nucleus nervi oculomotorii centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:499, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * perlia nucleus of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:499 ] ## Cross-references * BAMS:C3 * FMA:72425 * NIF_GrossAnatomy:birnlex_786 - * NeuroNames:499 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_786] - * UMLS:C0175384 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_786] + * NeuroNames:499 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_786 ] + * UMLS:C0175384 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_786 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003060.md b/md/UBERON/60/UBERON_0003060.md index 0054de5ac8..64ede6acdc 100644 --- a/md/UBERON/60/UBERON_0003060.md +++ b/md/UBERON/60/UBERON_0003060.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003060 * *Label* = pronephric duct - * *Definition* = In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronephric_duct] + * *Definition* = In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronephric_duct ] ## Synonyms - * archinephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000082] - * ductus pronephricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pronephric_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * archinephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000082 ] + * ductus pronephricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pronephric_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0011088 * SCTID:361406002 * TAO:0000150 - * UMLS:C1283945 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pronephric_Duct] + * UMLS:C1283945 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pronephric_Duct ] * VHOG:0000082 * Wikipedia:Pronephric_duct * XAO:0000063 @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003160.md b/md/UBERON/60/UBERON_0003160.md index c5e71c7336..8307a82d68 100644 --- a/md/UBERON/60/UBERON_0003160.md +++ b/md/UBERON/60/UBERON_0003160.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004503 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000768 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003160 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_0003260.md b/md/UBERON/60/UBERON_0003260.md index 466bfabed6..e5b264d101 100644 --- a/md/UBERON/60/UBERON_0003260.md +++ b/md/UBERON/60/UBERON_0003260.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003260 * *Label* = endoderm of hindgut - * *Definition* = An endoderm that is part of a hindgut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a hindgut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * hindgut endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hindgut endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003360.md b/md/UBERON/60/UBERON_0003360.md index 424862368d..996ab31a3d 100644 --- a/md/UBERON/60/UBERON_0003360.md +++ b/md/UBERON/60/UBERON_0003360.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003360 * *Label* = epithelium of parotid gland - * *Definition* = An epithelium that is part of a parotid gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a parotid gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of parotid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of parotid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of parotid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * parotid gland duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004555] + * epithelial tissue of parotid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of parotid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of parotid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * parotid gland duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004555 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parotid gland](../../UBERON/31/UBERON_0001831.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003460.md b/md/UBERON/60/UBERON_0003460.md index 364a3998c2..801860d9f5 100644 --- a/md/UBERON/60/UBERON_0003460.md +++ b/md/UBERON/60/UBERON_0003460.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003460 * *Label* = arm bone - * *Definition* = A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * arm bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:178] - * bone organ of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:178 ] + * bone organ of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003560.md b/md/UBERON/60/UBERON_0003560.md index 8614487226..2daef25ce9 100644 --- a/md/UBERON/60/UBERON_0003560.md +++ b/md/UBERON/60/UBERON_0003560.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003560 * *Label* = spinal cord arachnoid mater - * *Definition* = An arachnoid mater that is part of a spinal cord [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that is part of a spinal cord [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arachnoid mater of neuraxis of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid mater of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arachnoid of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord arachnoid mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arachnoid mater of neuraxis of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid mater of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arachnoid of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord arachnoid mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The middle membrane of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003660.md b/md/UBERON/60/UBERON_0003660.md index 7a5bf681de..7cf582664b 100644 --- a/md/UBERON/60/UBERON_0003660.md +++ b/md/UBERON/60/UBERON_0003660.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003660 * *Label* = eyelid muscle - * *Definition* = A muscle that attaches to an eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A muscle that attaches to an eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * blepharon muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eyelid muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blepharon muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eyelid muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0000269 - * UMLS:C1707990 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelid_Muscle] + * UMLS:C1707990 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelid_Muscle ] * ncithesaurus:Eyelid_Muscle ## Subsets @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscle in the orbit of the eye that lifts the upper eyelid[ncithesaurus:Eyelid_Muscle]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003860.md b/md/UBERON/60/UBERON_0003860.md index 21683fd947..c0f24733f3 100644 --- a/md/UBERON/60/UBERON_0003860.md +++ b/md/UBERON/60/UBERON_0003860.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003860 * *Label* = hindlimb mesenchyme - * *Definition* = Mesenchyme that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0003960.md b/md/UBERON/60/UBERON_0003960.md index 1145c64f25..e7710bf12e 100644 --- a/md/UBERON/60/UBERON_0003960.md +++ b/md/UBERON/60/UBERON_0003960.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003960 * *Label* = styloid process of temporal bone - * *Definition* = slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008023[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_styloid_process] + * *Definition* = slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008023, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_styloid_process ] * *Comment* = Disease notes: Eagle's syndrome ## Synonyms - * processus styloideus ossis temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_styloid_process] - * styloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52877] - * styloid process of petrous part of temporal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52877] - * temporal styloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_styloid_process] - * processus styloideus ossis temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_styloid_process[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus styloideus ossis temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_styloid_process ] + * styloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52877 ] + * styloid process of petrous part of temporal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52877 ] + * temporal styloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_styloid_process ] + * processus styloideus ossis temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_styloid_process, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004060.md b/md/UBERON/60/UBERON_0004060.md index 0852c0a30f..dd89fb9d76 100644 --- a/md/UBERON/60/UBERON_0004060.md +++ b/md/UBERON/60/UBERON_0004060.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004060 * *Label* = neural tube ventricular layer - * *Definition* = the layer of undifferentiated, proliferating cells that line the neural tube lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009689] + * *Definition* = the layer of undifferentiated, proliferating cells that line the neural tube lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009689 ] * *Comment* = consider merging with 'ventricular zone' ## Synonyms - * neural tube ependymal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009689] - * neural tube ventricular zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009689] + * neural tube ependymal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009689 ] + * neural tube ventricular zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009689 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004160.md b/md/UBERON/60/UBERON_0004160.md index e7174ed38d..93f3a10a5a 100644 --- a/md/UBERON/60/UBERON_0004160.md +++ b/md/UBERON/60/UBERON_0004160.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004160 * *Label* = proepicardium - * *Definition* = An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003342[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/proepicardium] + * *Definition* = An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003342, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/proepicardium ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004260.md b/md/UBERON/60/UBERON_0004260.md index 60b47940c0..c53eaeb5ff 100644 --- a/md/UBERON/60/UBERON_0004260.md +++ b/md/UBERON/60/UBERON_0004260.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004260 * *Label* = upper arm blood vessel - * *Definition* = A blood vessel that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forelimb stylopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * forelimb stylopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004360.md b/md/UBERON/60/UBERON_0004360.md index e9ef7cc097..e8e674072d 100644 --- a/md/UBERON/60/UBERON_0004360.md +++ b/md/UBERON/60/UBERON_0004360.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004360 * *Label* = cauda epididymis - * *Definition* = the tail of the epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002662] + * *Definition* = the tail of the epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002662 ] * *Comment* = Structure notes: This has a thicker myoepithelium than the head region, as it is involved in absorbing fluid to make the sperm more concentrated.[WP] ## Synonyms - * cauda epididymidis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000210] - * epididymal cauda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000210] - * epididymal tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18261] - * epididymis tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18261] + * cauda epididymidis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000210 ] + * epididymal cauda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000210 ] + * epididymal tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18261 ] + * epididymis tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18261 ] * epidymis tail - * tail of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18261] - * tail of epididymis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18261] + * tail of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18261 ] + * tail of epididymis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18261 ] * tail of epidymis - * corpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002662] + * corpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002662 ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:18261 * MA:0002763 * SCTID:279621002 - * UMLS:C0228024 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tail_of_the_Epididymis] + * UMLS:C0228024 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tail_of_the_Epididymis ] * ncithesaurus:Tail_of_the_Epididymis ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004660.md b/md/UBERON/60/UBERON_0004660.md index e67219912e..af78007697 100644 --- a/md/UBERON/60/UBERON_0004660.md +++ b/md/UBERON/60/UBERON_0004660.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004660 * *Label* = mandible coronoid process - * *Definition* = a dorsal process on the lower jaw associated with muscle attachment. It may be formed by a separate coronoid bone or as a process of the dentary. In most living (and many extinct) mammals, the most dorsal of the three proximal processes of the jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronoid_process_of_the_mandible[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryCh.html#Coronoid%20process] + * *Definition* = a dorsal process on the lower jaw associated with muscle attachment. It may be formed by a separate coronoid bone or as a process of the dentary. In most living (and many extinct) mammals, the most dorsal of the three proximal processes of the jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronoid_process_of_the_mandible, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryCh.html#Coronoid%20process ] * *Comment* = AO notes: TAO:0001673 coronoid process, a bony projection on dentary ## Synonyms - * coronoid process of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52833] - * processus coronoideus (mandibula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52833] - * coronoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000103] - * mandibular coronoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002819] - * processus coronoideus mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronoid_process_of_the_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coronoid process of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52833 ] + * processus coronoideus (mandibula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52833 ] + * coronoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000103 ] + * mandibular coronoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002819 ] + * processus coronoideus mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronoid_process_of_the_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004760.md b/md/UBERON/60/UBERON_0004760.md index 1580eaaccd..bb3c356044 100644 --- a/md/UBERON/60/UBERON_0004760.md +++ b/md/UBERON/60/UBERON_0004760.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004760 * *Label* = gland of anal canal - * *Definition* = A gland that is part of an anal canal [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_gland] + * *Definition* = A gland that is part of an anal canal [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_gland ] ## Synonyms - * gland of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gland of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * anal gland - * anal sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anal sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * gland of anus * rectal gland @@ -21,7 +21,7 @@ * FMA:15720 * FMA:15724 * SCTID:245448005 - * UMLS:C0162322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Gland] + * UMLS:C0162322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Gland ] * Wikipedia:Anal_gland * ncithesaurus:Anal_Gland @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal canal](../../UBERON/59/UBERON_0000159.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0004860.md b/md/UBERON/60/UBERON_0004860.md index be35d29f7f..5a699d6e0d 100644 --- a/md/UBERON/60/UBERON_0004860.md +++ b/md/UBERON/60/UBERON_0004860.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0003053 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004860 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_0005160.md b/md/UBERON/60/UBERON_0005160.md index 7372e7ea7c..d63b6844de 100644 --- a/md/UBERON/60/UBERON_0005160.md +++ b/md/UBERON/60/UBERON_0005160.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005160 * *Label* = vestigial structure - * *Definition* = A remnant structure from earlier development or evolution. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PATOC:MAH] + * *Definition* = A remnant structure from earlier development or evolution. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PATOC:MAH ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [has_quality](../../SIO/08/SIO_000008.md) some [vestigial](../../PATO/88/PATO_0000588.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0005360.md b/md/UBERON/60/UBERON_0005360.md index 31e678ccd9..9e3336d088 100644 --- a/md/UBERON/60/UBERON_0005360.md +++ b/md/UBERON/60/UBERON_0005360.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005360 * *Label* = inferior glossopharyngeal IX ganglion - * *Definition* = the lower group of sensory neuron cell bodies associated with the glossopharyngeal nerve[MP]. It is situated in a depression in the lower border of the petrous portion of the temporal bone[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001084[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve] + * *Definition* = the lower group of sensory neuron cell bodies associated with the glossopharyngeal nerve[MP]. It is situated in a depression in the lower border of the petrous portion of the temporal bone[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001084, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve ] * *Comment* = We follow FMA and VHOG in making the relation subclass ## Synonyms - * extracraniale ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001084] - * ganglion inferius (nervus glossopharygeus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * ganglion inferius nervus glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion of andersch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * glossopharyngeal nerve inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * glossopharyngeal nerve petrous ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * inferior ganglion of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * inferior glossopharyngeal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001084] - * ninth cranial nerve inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53475] - * ganglion inferius nervi glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion petrosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glossopharyngeal IX inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000743] - * petrosal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001084[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/petrosal%20ganglion] - * petrosal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001084] - * petrous ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/File:Gray791.png[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/petrous%20ganglion] + * extracraniale ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001084 ] + * ganglion inferius (nervus glossopharygeus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * ganglion inferius nervus glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion of andersch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * glossopharyngeal nerve inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * glossopharyngeal nerve petrous ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * inferior ganglion of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * inferior glossopharyngeal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001084 ] + * ninth cranial nerve inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53475 ] + * ganglion inferius nervi glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion petrosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glossopharyngeal IX inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000743 ] + * petrosal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001084 ] + * petrosal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001084, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/petrosal%20ganglion ] + * petrous ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_glossopharyngeal_nerve, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/File:Gray791.png, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/petrous%20ganglion ] ## Cross-references @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0005460.md b/md/UBERON/60/UBERON_0005460.md index 59d75eb57f..79ab613cbd 100644 --- a/md/UBERON/60/UBERON_0005460.md +++ b/md/UBERON/60/UBERON_0005460.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005460 * *Label* = left vitelline vein - * *Definition* = A vitelline vein that is in the left side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vitelline vein that is in the left side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [vitelline vein](../../UBERON/87/UBERON_0005487.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0005660.md b/md/UBERON/60/UBERON_0005660.md index 5a82e73a11..2d0fb02644 100644 --- a/md/UBERON/60/UBERON_0005660.md +++ b/md/UBERON/60/UBERON_0005660.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005660 * *Label* = 2nd arch ectoderm - * *Definition* = An ectoderm that is part of a pharyngeal arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a pharyngeal arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd pharyngeal arch ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001062] + * 2nd pharyngeal arch ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001062 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0005760.md b/md/UBERON/60/UBERON_0005760.md index 065086a1a6..d219ea33dc 100644 --- a/md/UBERON/60/UBERON_0005760.md +++ b/md/UBERON/60/UBERON_0005760.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005760 * *Label* = urorectal septum - * *Definition* = The ridge of mesoderm covered with endoderm that in the early developing embryo partitions the endodermal cloaca into the primary urogenital sinus (ventrally) and the anorectal canal of the hindgut (dorsally); the urorectal septum eventually fuses with the cloacal membrane, dividing it into a dorsal anal membrane and a larger ventral urogenital membrane - this area of fusion is represented in the adult by the perineal body[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urorectal_septum] + * *Definition* = The ridge of mesoderm covered with endoderm that in the early developing embryo partitions the endodermal cloaca into the primary urogenital sinus (ventrally) and the anorectal canal of the hindgut (dorsally); the urorectal septum eventually fuses with the cloacal membrane, dividing it into a dorsal anal membrane and a larger ventral urogenital membrane - this area of fusion is represented in the adult by the perineal body[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urorectal_septum ] * *Comment* = Editor notes: todo - use to define cloacal septation in GO ## Synonyms - * septum urorectale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urorectal_septum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urorectal fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] - * urorectal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] - * cloacal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000018] + * septum urorectale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urorectal_septum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urorectal fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] + * urorectal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] + * cloacal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000018 ] ## Cross-references @@ -19,7 +19,7 @@ * EHDAA:5921 * EMAPA:17212 * EMAPA:17380 - * UMLS:C1519838 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urorectal_Septum] + * UMLS:C1519838 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urorectal_Septum ] * VHOG:0000018 * Wikipedia:Urorectal_septum * http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray992.png @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A ridge of mesoderm covered with endoderm that in the early developing embryo divides the endodermal cloaca into the urogenital sinus and the rectum. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals the lowly monotremes still have a cloaca. Higher types have done away with this structure and have a separate anal outlet for the rectum. The monotreme cloaca shows the initiation of this subdivision. The cloaca has such includes only the distal part, roughly comparable to the proctodeum. The more proximal part is divided into (1) a large dorsal passage into which the intestine opens, the coprodeum, and (2) a ventral portion, the urodeum with which the bladder connects. (...) the development of the placental mammals recapitulates in many respects the phylogenetic story. In the sexually indifferent stage of placental mammal there is a cloaca. While the indifferent stage still persists, a septum develops, and extends out to the closing membrane. This divides the cloaca into two chambers: a coprodeum continuous with the gut above, and a urodeum or urogenital sinus below.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006060.md b/md/UBERON/60/UBERON_0006060.md index 27d7355826..10eccad939 100644 --- a/md/UBERON/60/UBERON_0006060.md +++ b/md/UBERON/60/UBERON_0006060.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006060 * *Label* = conotruncus - * *Definition* = The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:gg] + * *Definition* = The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:gg ] ## Synonyms - * bulbus cordis rostral half [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000437] - * rostral half of bulbus cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16221] + * bulbus cordis rostral half [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000437 ] + * rostral half of bulbus cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16221 ] ## Cross-references @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The conus arteriosus is considered a component part of the heart because it has a myocardial wall and lies within the pericardial cavity. It is a feature of the evolutionary primitive state. In amphibians it is called the bulbus cordis, a term that is also used for its equivalent in mammalian embryos. The more derived extant bony fish, like the zebrafish, do not have this cardiac compartment. They have a so-called bulbus arteriosus, which is not enclosed by cardiac muscle, but by elastic tissue and smooth muscle, and therefore is considered to be a specialization of the proximal part of the ventral aorta (256). However, similar to the mammalian condition (306, 326, 339), the bulbus arteriosus in zebrafish embryonic hearts is surrounded by myocardium that disappears with development (134, 135). The bony fish bulbus arteriosus might thus be homologous to the shark conus arteriosus and amphibian/mammalian bulbus cordis.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006260.md b/md/UBERON/60/UBERON_0006260.md index ae4a431e95..80ae668f89 100644 --- a/md/UBERON/60/UBERON_0006260.md +++ b/md/UBERON/60/UBERON_0006260.md @@ -7,7 +7,7 @@ ## Synonyms - * lingual swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000996] + * lingual swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000996 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Primordium of the tongue; the median swelling and the distal and proximal swellings arise from the ventral aspect of the stomodeum. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most adult amphibians have a tongue, as do all known reptiles, birds and mammals. Thus it is likely that the tongue appeared with the establishment of tetrapods and this structure seems to be related, to some extant, to the terrestrial lifestyle.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006360.md b/md/UBERON/60/UBERON_0006360.md index b265e3b4ea..e36caa5bd7 100644 --- a/md/UBERON/60/UBERON_0006360.md +++ b/md/UBERON/60/UBERON_0006360.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006460.md b/md/UBERON/60/UBERON_0006460.md index 6713c33383..3fa513857c 100644 --- a/md/UBERON/60/UBERON_0006460.md +++ b/md/UBERON/60/UBERON_0006460.md @@ -6,16 +6,16 @@ ## Synonyms - * S1 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256625] - * S1 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1532] - * first sacral spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1532] + * S1 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256625 ] + * S1 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1532 ] + * first sacral spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1532 ] ## Cross-references * FMA:256625 * NIF_GrossAnatomy:birnlex_1532 * SCTID:278780004 - * UMLS:C0457876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1532] + * UMLS:C0457876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1532 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006660.md b/md/UBERON/60/UBERON_0006660.md index 1afc3e3fbd..2beea78760 100644 --- a/md/UBERON/60/UBERON_0006660.md +++ b/md/UBERON/60/UBERON_0006660.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006660 * *Label* = muscle layer - * *Definition* = A region of muscle in many organs in the vertebrate body, adjacent to the submucosa membrane. It is responsible for gut movement such as peristalsis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscular_layer] + * *Definition* = A region of muscle in many organs in the vertebrate body, adjacent to the submucosa membrane. It is responsible for gut movement such as peristalsis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscular_layer ] * *Comment* = AO notes: NCITA class appears to be defined more generally ## Synonyms - * muscular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscularis layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45634] - * tunica muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004838[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * muscular coat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_externa] + * muscular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscularis layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45634 ] + * tunica muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004838, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * muscular coat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_externa ] * muscularis - * muscularis externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004838] - * muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_externa] - * transverse muscular fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_externa] - * tunica externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004838] - * tunica muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_externa] + * muscularis externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004838 ] + * muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_externa ] + * transverse muscular fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_externa ] + * tunica externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004838 ] + * tunica muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_externa ] ## Cross-references * BTO:0004838 * FMA:45634 * SCTID:86915006 - * UMLS:C0225358 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_Layer] + * UMLS:C0225358 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_Layer ] * Wikipedia:Muscular_layer * ncithesaurus:Muscle_Layer @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An outer layer of smooth muscle surrounding a hollow or tubular organ as the bladder, esophagus, large intestine, small intestine, stomach, ureter, uterus, and vagina that often consists of an inner layer of circular fibers serving to narrow the lumen of the organ and an outer layer of longitudinal fibers serving to shorten its length[BTO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006860.md b/md/UBERON/60/UBERON_0006860.md index 8b4141be64..d9e9d9f3c9 100644 --- a/md/UBERON/60/UBERON_0006860.md +++ b/md/UBERON/60/UBERON_0006860.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006860 * *Label* = swim bladder - * *Definition* = A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). May function as one or more of:- hydrostatic organ, sound producing organ, sound receptor, respiratory organ. Found in Actinopterygii. Often lacking in bottom fishes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/Dictionary/S.htm] + * *Definition* = A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). May function as one or more of:- hydrostatic organ, sound producing organ, sound receptor, respiratory organ. Found in Actinopterygii. Often lacking in bottom fishes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/Dictionary/S.htm ] ## Synonyms - * gas bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000076[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.briancoad.com/Dictionary/S.htm] - * swimbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000076] - * air bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000076] + * gas bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000076, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.briancoad.com/Dictionary/S.htm ] + * swimbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000076 ] + * air bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000076 ] ## Cross-references @@ -47,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008980 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0006960.md b/md/UBERON/60/UBERON_0006960.md index 598d7aa952..86fdd679de 100644 --- a/md/UBERON/60/UBERON_0006960.md +++ b/md/UBERON/60/UBERON_0006960.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006960 * *Label* = ovary stroma - * *Definition* = The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stroma_of_ovary_%28animal_tissue%29_of_ovary] + * *Definition* = The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stroma_of_ovary_%28animal_tissue%29_of_ovary ] ## Synonyms - * interstitial tissue of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18626] - * ovarian stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18626] - * ovary stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002991] - * stroma of the ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stroma_of_ovary] - * stroma ovarica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18626] - * stroma ovarii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stroma_of_ovary[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * interstitial tissue of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18626 ] + * ovarian stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18626 ] + * ovary stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002991 ] + * stroma of the ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stroma_of_ovary ] + * stroma ovarica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18626 ] + * stroma ovarii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stroma_of_ovary, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:18626 * MA:0002991 * SCTID:259306002 - * UMLS:C0737271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stroma_of_the_Ovarian_Cortex] + * UMLS:C0737271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stroma_of_the_Ovarian_Cortex ] * Wikipedia:Stroma_of_ovary_%28animal_tissue%29_of_ovary * ncithesaurus:Stroma_of_the_Ovarian_Cortex @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0007160.md b/md/UBERON/60/UBERON_0007160.md index aacac2083c..11984f2f49 100644 --- a/md/UBERON/60/UBERON_0007160.md +++ b/md/UBERON/60/UBERON_0007160.md @@ -6,7 +6,7 @@ ## Synonyms - * sinus petrosal inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50770] + * sinus petrosal inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50770 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0007260.md b/md/UBERON/60/UBERON_0007260.md index 59d2e702a6..d29cf53c2f 100644 --- a/md/UBERON/60/UBERON_0007260.md +++ b/md/UBERON/60/UBERON_0007260.md @@ -6,8 +6,8 @@ ## Synonyms - * C3 intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13896] - * intervertebral disk, C3-C4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13896] + * C3 intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13896 ] + * intervertebral disk, C3-C4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13896 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 3](../../UBERON/12/UBERON_0004612.md) and [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 4](../../UBERON/13/UBERON_0004613.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0007960.md b/md/UBERON/60/UBERON_0007960.md index c266c8b976..067ea02592 100644 --- a/md/UBERON/60/UBERON_0007960.md +++ b/md/UBERON/60/UBERON_0007960.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007960 * *Label* = scapholunate - * *Definition* = The combined scaphoid and lunate bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The combined scaphoid and lunate bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: present in mouse[based on MA], carnivora[Websters] and macropods[WP]. ## Synonyms - * scapholunate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * intermedioradial carpal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001346] - * scapholunatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * scapholunate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * intermedioradial carpal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001346 ] + * scapholunatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0008260.md b/md/UBERON/60/UBERON_0008260.md index bba78c2498..0b1b9e52cc 100644 --- a/md/UBERON/60/UBERON_0008260.md +++ b/md/UBERON/60/UBERON_0008260.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008260 * *Label* = spine appendage - * *Definition* = a hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spine_(zoology)] + * *Definition* = a hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spine_(zoology) ] * *Comment* = May be reclassified depending on CARO treatment of appendage ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0008460.md b/md/UBERON/60/UBERON_0008460.md index e43c0b2e64..41160cb016 100644 --- a/md/UBERON/60/UBERON_0008460.md +++ b/md/UBERON/60/UBERON_0008460.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008460 * *Label* = superior articular process of thoracic vertebra - * *Definition* = A superior articular process of vertebra that is part of a thoracic vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A superior articular process of vertebra that is part of a thoracic vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cranial articular process of thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9155] - * processus articularis (zygapophysis) thoracicus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9155] - * superior apophyseal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9155] - * superior zygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9155] + * cranial articular process of thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9155 ] + * processus articularis (zygapophysis) thoracicus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9155 ] + * superior apophyseal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9155 ] + * superior zygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9155 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) and [superior articular process of vertebra](../../UBERON/79/UBERON_0001079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0008860.md b/md/UBERON/60/UBERON_0008860.md index dcee6a66b0..a42a021de6 100644 --- a/md/UBERON/60/UBERON_0008860.md +++ b/md/UBERON/60/UBERON_0008860.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008860 * *Label* = intermediate gastric gland - * *Definition* = any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010796] + * *Definition* = any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010796 ] * *Comment* = check me ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0008960.md b/md/UBERON/60/UBERON_0008960.md index 76e200cfea..4c3fbce5d0 100644 --- a/md/UBERON/60/UBERON_0008960.md +++ b/md/UBERON/60/UBERON_0008960.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008960 * *Label* = melon organ - * *Definition* = The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Melon_(whale)] + * *Definition* = The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Melon_(whale) ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0009060.md b/md/UBERON/60/UBERON_0009060.md index 9793b99855..d3072f52c4 100644 --- a/md/UBERON/60/UBERON_0009060.md +++ b/md/UBERON/60/UBERON_0009060.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009060 * *Label* = air sac - * *Definition* = any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bird_anatomy#Respiratory_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/air+sac] + * *Definition* = any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bird_anatomy#Respiratory_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/air+sac ] * *Comment* = Three distinct sets of organs perform respirationthe anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP] ## Synonyms - * sacci pneumatici [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * psotcranial air sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * sacci pneumatici [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * psotcranial air sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0009660.md b/md/UBERON/60/UBERON_0009660.md index 787e361e3e..d6dfc5b7f0 100644 --- a/md/UBERON/60/UBERON_0009660.md +++ b/md/UBERON/60/UBERON_0009660.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0009860.md b/md/UBERON/60/UBERON_0009860.md index 773d7600e2..cab7fa8270 100644 --- a/md/UBERON/60/UBERON_0009860.md +++ b/md/UBERON/60/UBERON_0009860.md @@ -27,9 +27,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009860 * *[depicted_by](../../depicted/by/depicted_by.md)* = http://content61.eol.org/content/2010/04/23/02/32371_orig.jpg +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_0009960.md b/md/UBERON/60/UBERON_0009960.md index 8705b711be..82e3e9cc80 100644 --- a/md/UBERON/60/UBERON_0009960.md +++ b/md/UBERON/60/UBERON_0009960.md @@ -6,9 +6,9 @@ ## Synonyms - * circular muscle layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67605] - * inner circular muscle layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67605] - * esophagus smooth muscle circular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001574] + * circular muscle layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67605 ] + * inner circular muscle layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67605 ] + * esophagus smooth muscle circular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001574 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [circular muscle layer](../../UBERON/68/UBERON_0012368.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010060.md b/md/UBERON/60/UBERON_0010060.md index 8d9a408ecb..2c0177a2b1 100644 --- a/md/UBERON/60/UBERON_0010060.md +++ b/md/UBERON/60/UBERON_0010060.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010060 * *Label* = pharyngeal opening of pharyngotympanic tube - * *Definition* = On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_opening_of_auditory_tube] + * *Definition* = On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_opening_of_auditory_tube ] ## Synonyms - * ostium pharyngeum tubae auditivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ostium pharyngeum tubae auditoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pharyngeal opening of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal opening of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal orifice of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal orifice of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal orifice of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal ostium of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal ostium of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal ostium of pharyngotympanic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * pharyngeal tubal ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54979] - * ostium pharyngeum tubae auditivae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_opening_of_auditory_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pharyngeal ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_opening_of_auditory_tube] + * ostium pharyngeum tubae auditivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ostium pharyngeum tubae auditoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pharyngeal opening of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal opening of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal orifice of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal orifice of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal orifice of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal ostium of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal ostium of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal ostium of pharyngotympanic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * pharyngeal tubal ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54979 ] + * ostium pharyngeum tubae auditivae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_opening_of_auditory_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pharyngeal ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_opening_of_auditory_tube ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010160.md b/md/UBERON/60/UBERON_0010160.md index 5802a6ae27..ba5099ed80 100644 --- a/md/UBERON/60/UBERON_0010160.md +++ b/md/UBERON/60/UBERON_0010160.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010160 * *Label* = lumen of lymphatic vessel - * *Definition* = An anatomical cavity that surrounded_by a lymphatic vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a lymphatic vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumen of lymphatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59681] - * lymphatic vessel lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59681] + * lumen of lymphatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59681 ] + * lymphatic vessel lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59681 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010260.md b/md/UBERON/60/UBERON_0010260.md index e39430da0a..99e1c7c618 100644 --- a/md/UBERON/60/UBERON_0010260.md +++ b/md/UBERON/60/UBERON_0010260.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010260 * *Label* = umbilical blood vessel - * *Definition* = One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Whartons jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003230] + * *Definition* = One of the three blood vessels, usually one large umbilical vein and two small umbilical arteries, buried within Whartons jelly, that transport blood to and from the placenta, where exchange between the mother and fetus takes place; the umbilical vein carries oxygenated, nutrient-rich blood from the placenta to the fetus, and the umbilical arteries carry deoxygenated, nutrient-depleted blood from the fetus to the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003230 ] ## Synonyms * umbilical cord blood vessel * umbilical vessel - * umbilical cord blood vessels [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * umbilical cord blood vessels [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * umbilical vasculature ## Cross-references @@ -22,20 +22,21 @@ ## Superclasses * [blood vessel](../../UBERON/81/UBERON_0001981.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) * [located_in](../../RO/25/RO_0001025.md) some [mesenchyme of umbilical cord](../../UBERON/22/UBERON_0003422.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010360.md b/md/UBERON/60/UBERON_0010360.md index 9f8912dce0..216861b6f9 100644 --- a/md/UBERON/60/UBERON_0010360.md +++ b/md/UBERON/60/UBERON_0010360.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010360 * *Label* = pharyngeal arch mesenchyme from head mesenchyme - * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a head mesenchyme from mesoderm and is part of a entire pharyngeal arch associated mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Partially implements UBERONREF:0000002 NC meeting scheme ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head mesenchyme from mesoderm](../../UBERON/04/UBERON_0006904.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [entire pharyngeal arch associated mesenchyme](../../UBERON/46/UBERON_0010046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010560.md b/md/UBERON/60/UBERON_0010560.md index a29b930e9e..4be84ef986 100644 --- a/md/UBERON/60/UBERON_0010560.md +++ b/md/UBERON/60/UBERON_0010560.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010560 * *Label* = pedal digit 4 metatarsal cartilage element - * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 4 metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe 4 metatarsal cartilage element - * foot digit 4 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 4 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4 mesenchyme](../../UBERON/98/UBERON_0005698.md) and [pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0010760.md b/md/UBERON/60/UBERON_0010760.md index 532849c981..09a52654b9 100644 --- a/md/UBERON/60/UBERON_0010760.md +++ b/md/UBERON/60/UBERON_0010760.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010760 * *Label* = supraglenoid tubercle - * *Definition* = The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraglenoid_tubercle] + * *Definition* = The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraglenoid_tubercle ] ## Synonyms - * supraglenoid tuberosity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23263] - * tuberculum supraglenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraglenoid_tubercle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * supraglenoid tuberosity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23263 ] + * tuberculum supraglenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraglenoid_tubercle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011060.md b/md/UBERON/60/UBERON_0011060.md index dbcc750656..94b236745d 100644 --- a/md/UBERON/60/UBERON_0011060.md +++ b/md/UBERON/60/UBERON_0011060.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011060 * *Label* = perilymphatic channel - * *Definition* = A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.246.280[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perilymphatic_duct] + * *Definition* = A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.246.280, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perilymphatic_duct ] * *Comment* = Editor notes: relationship to FMA class unclear ## Synonyms - * ductus perilymphaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000136] - * cochlear aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77822[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.246.280] - * perilymphatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A09.246.631.246.280] - * perilymphatic space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000248] + * ductus perilymphaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000136 ] + * cochlear aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77822, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.246.280 ] + * perilymphatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A09.246.631.246.280 ] + * perilymphatic space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000248 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Duct that contains perilymph[ZFA:0005461, ZFIN:curator]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011160.md b/md/UBERON/60/UBERON_0011160.md index 90f2b816b7..1355a65a35 100644 --- a/md/UBERON/60/UBERON_0011160.md +++ b/md/UBERON/60/UBERON_0011160.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [nasal bone](../../UBERON/81/UBERON_0001681.md) and [facial suture](../../UBERON/99/UBERON_0009199.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011360.md b/md/UBERON/60/UBERON_0011360.md index 5de9f0c329..33e5b7ecc4 100644 --- a/md/UBERON/60/UBERON_0011360.md +++ b/md/UBERON/60/UBERON_0011360.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011360 * *Label* = ampulla caudalis - * *Definition* = A ventricle-like space at the end of the central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = A ventricle-like space at the end of the central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011660.md b/md/UBERON/60/UBERON_0011660.md index 9577004337..1190667470 100644 --- a/md/UBERON/60/UBERON_0011660.md +++ b/md/UBERON/60/UBERON_0011660.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011660 * *Label* = hypoplastron - * *Definition* = A paired plastron element that is in the posterior part of the plastron, anterior to the xiphiplastron and posterior to the hyoplastron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A paired plastron element that is in the posterior part of the plastron, anterior to the xiphiplastron and posterior to the hyoplastron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011660 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011860.md b/md/UBERON/60/UBERON_0011860.md index d9ab77297e..c9946ba2a0 100644 --- a/md/UBERON/60/UBERON_0011860.md +++ b/md/UBERON/60/UBERON_0011860.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0011960.md b/md/UBERON/60/UBERON_0011960.md index 7d01c86ede..9ebee9e1fd 100644 --- a/md/UBERON/60/UBERON_0011960.md +++ b/md/UBERON/60/UBERON_0011960.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011960 * *Label* = articular capsule of glenohumeral joint - * *Definition* = The articular capsule of the humerus is the articular capsule of the shoulder joint. It completely encircles the joint, being attached, above, to the circumference of the glenoid cavity beyond the glenoidal labrum; below, to the anatomical neck of the humerus, approaching nearer to the articular cartilage above than in the rest of its extent. It is thicker above and below than elsewhere, and is so remarkably loose and lax, that it has no action in keeping the bones in contact, but allows them to be separated from each other more than 2.5 cm. , an evident provision for that extreme freedom of movement which is peculiar to this articulation. It is strengthened, above, by the Supraspinatus; below, by the long head of the Triceps brachii; behind, by the tendons of the Infraspinatus and Teres minor; and in front, by the tendon of the Subscapularis.[WP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_capsule_of_the_humerus] + * *Definition* = The articular capsule of the humerus is the articular capsule of the shoulder joint. It completely encircles the joint, being attached, above, to the circumference of the glenoid cavity beyond the glenoidal labrum; below, to the anatomical neck of the humerus, approaching nearer to the articular cartilage above than in the rest of its extent. It is thicker above and below than elsewhere, and is so remarkably loose and lax, that it has no action in keeping the bones in contact, but allows them to be separated from each other more than 2.5 cm. , an evident provision for that extreme freedom of movement which is peculiar to this articulation. It is strengthened, above, by the Supraspinatus; below, by the long head of the Triceps brachii; behind, by the tendons of the Infraspinatus and Teres minor; and in front, by the tendon of the Subscapularis.[WP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_capsule_of_the_humerus ] ## Synonyms - * articular capsule of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_capsule_of_the_humerus] + * articular capsule of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_capsule_of_the_humerus ] * articular capsule of shoulder joint - * capsule of shoulder joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:34944] - * fibrous capsule of glenohumeral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:34944] + * capsule of shoulder joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:34944 ] + * fibrous capsule of glenohumeral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:34944 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [articular capsule](../../UBERON/84/UBERON_0001484.md) and [part_of](../../BFO/50/BFO_0000050.md) some [glenohumeral joint](../../UBERON/70/UBERON_0001470.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011960 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0012260.md b/md/UBERON/60/UBERON_0012260.md index d49de277ad..491b149134 100644 --- a/md/UBERON/60/UBERON_0012260.md +++ b/md/UBERON/60/UBERON_0012260.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012260 * *Label* = alular digit - * *Definition* = A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10220427[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PhenoscapeRCN:Oct2012] + * *Definition* = A manual digit found in Aves that is the most preaxial position and is morphologically similar to digit 1 in the standard tetrapod configuration and develops from embryonic digit 2, with contributions from embryonic digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10220427, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PhenoscapeRCN:Oct2012 ] * *Comment* = Hypothesized to be homologous to manual digit 1 of other tetrapods. Develops from the embryonic digit that is positionally the 2nd, with contributions from the 1st ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0012360.md b/md/UBERON/60/UBERON_0012360.md index 88f0eb91f6..8bf45d6f44 100644 --- a/md/UBERON/60/UBERON_0012360.md +++ b/md/UBERON/60/UBERON_0012360.md @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jaw region](../../UBERON/95/UBERON_0011595.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012360 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0013160.md b/md/UBERON/60/UBERON_0013160.md index 85d61874e2..b039a8fa7c 100644 --- a/md/UBERON/60/UBERON_0013160.md +++ b/md/UBERON/60/UBERON_0013160.md @@ -6,7 +6,7 @@ ## Synonyms - * ventricular layer epithalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000884] + * ventricular layer epithalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000884 ] * ventricular layer of epithalamus ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013160 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0013460.md b/md/UBERON/60/UBERON_0013460.md index aecd875a9a..b5ab119cc6 100644 --- a/md/UBERON/60/UBERON_0013460.md +++ b/md/UBERON/60/UBERON_0013460.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013460 * *Label* = suprainiac fossa - * *Definition* = The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprainiac_fossa] + * *Definition* = The suprainiac fossa is an elliptic depression on the occiput above the superior nuchal line, or inion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprainiac_fossa ] ## Synonyms @@ -30,8 +30,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_63221 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013470 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0013560.md b/md/UBERON/60/UBERON_0013560.md index 7256948e24..2486815ccd 100644 --- a/md/UBERON/60/UBERON_0013560.md +++ b/md/UBERON/60/UBERON_0013560.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013560 * *Label* = Brodmann (1909) area 32 - * *Definition* = The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_32] + * *Definition* = The Brodmann area 32, also known in the human brain as the dorsal anterior cingulate area 32, refers to a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. In the human it forms an outer arc around the anterior cingulate gyrus. The cingulate sulcus defines approximately its inner boundary and the superior rostral sulcus (H) its ventral boundary; rostrally it extends almost to the margin of the frontal lobe. Cytoarchitecturally it is bounded internally by the ventral anterior cingulate area 24, externally by medial margins of the agranular frontal area 6, intermediate frontal area 8, granular frontal area 9, frontopolar area 10, and prefrontal area 11-1909. (Brodmann19-09). Dorsal region of anterior cingulate gyrus is associated with rational thought processes, most notably active during the Stroop task. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_32 ] ## Synonyms - * B09-32 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1760] - * Brodmann (1909) area 32 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1760] - * Brodmann area 32 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68629] - * Brodmann area 32, dorsal anterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1760] - * Prelimbic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68629] - * area 32 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68629] - * area 32 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1760] - * area cingularis anterior dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1760] - * area cingularis anterior dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_32[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-32 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1760[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 25 of Brodmann-1905 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1021] - * area 32 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1021] - * area praelimbica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1021[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brodmann's area 32 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1021] - * paralemniscal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PL] + * B09-32 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1760 ] + * Brodmann (1909) area 32 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1760 ] + * Brodmann area 32 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68629 ] + * Brodmann area 32, dorsal anterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1760 ] + * Prelimbic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68629 ] + * area 32 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68629 ] + * area 32 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1760 ] + * area cingularis anterior dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1760 ] + * area cingularis anterior dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_32, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-32 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1760, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 25 of Brodmann-1905 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1021 ] + * area 32 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1021 ] + * area praelimbica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1021, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brodmann's area 32 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1021 ] + * paralemniscal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PL ] ## Cross-references * BAMS:PL * FMA:68629 * NIF_GrossAnatomy:birnlex_1760 - * NeuroNames:1021 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1760] - * UMLS:C1272493 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1760] + * NeuroNames:1021 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1760 ] + * UMLS:C1272493 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1760 ] * Wikipedia:Brodmann_area_32 ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0013760.md b/md/UBERON/60/UBERON_0013760.md index ebcfc244d3..12c01393de 100644 --- a/md/UBERON/60/UBERON_0013760.md +++ b/md/UBERON/60/UBERON_0013760.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013760 * *Label* = external cervical os - * *Definition* = Opening of uterine cervix into the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Opening of uterine cervix into the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * external os of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76836] - * ostium uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * external os of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76836 ] + * ostium uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] * external os * ostium of uterus @@ -16,7 +16,7 @@ * FMA:76836 * SCTID:362255005 - * UMLS:C1512165 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ectocervical_Os] + * UMLS:C1512165 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ectocervical_Os ] * Wikipedia:External_orifice_of_the_uterus * ncithesaurus:Ectocervical_Os @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is "H-shaped"[Wikipedia:External_orifice_of_the_uterus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0014460.md b/md/UBERON/60/UBERON_0014460.md index 4aba673474..eec05cfc0b 100644 --- a/md/UBERON/60/UBERON_0014460.md +++ b/md/UBERON/60/UBERON_0014460.md @@ -7,7 +7,7 @@ ## Synonyms * upper temporal fenestra - * supratemporal fenestrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * supratemporal fenestrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014460 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0014560.md b/md/UBERON/60/UBERON_0014560.md index bdb0764ff3..270b95c59c 100644 --- a/md/UBERON/60/UBERON_0014560.md +++ b/md/UBERON/60/UBERON_0014560.md @@ -6,7 +6,7 @@ ## Synonyms - * CA3 stratum lucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005040] + * CA3 stratum lucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005040 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [layer of hippocampal field](../../UBERON/67/UBERON_0014567.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hippocampus stratum lucidum](../../UBERON/37/UBERON_0007637.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014560 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0014760.md b/md/UBERON/60/UBERON_0014760.md index 554c1c61bb..15516bdbde 100644 --- a/md/UBERON/60/UBERON_0014760.md +++ b/md/UBERON/60/UBERON_0014760.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014760 * *Label* = gustatory nucleus - * *Definition* = The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 ). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1386] + * *Definition* = The gustatory nucleus is the enlarged rostral portion of the solitary nucleus, which receives taste afferents from the glossopharyngeal nerve and the intermediate nerve ( Carpenter-1983 ). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1386 ] ## Synonyms - * dorsal visceral gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1386] - * gustatory gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1386] - * gustatory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1386] + * dorsal visceral gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1386 ] + * gustatory gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1386 ] + * gustatory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1386 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014760 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0014860.md b/md/UBERON/60/UBERON_0014860.md index f1ae994127..4a09d762ef 100644 --- a/md/UBERON/60/UBERON_0014860.md +++ b/md/UBERON/60/UBERON_0014860.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014860 * *Label* = copepodite stage - * *Definition* = A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclo.co.uk/define/Copepodite] + * *Definition* = A development stage of copepods which follows the nauplius stage. It is segmented with more than 3 pairs of appendages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclo.co.uk/define/Copepodite ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014860 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_0015060.md b/md/UBERON/60/UBERON_0015060.md index 68304cec50..c571c652b8 100644 --- a/md/UBERON/60/UBERON_0015060.md +++ b/md/UBERON/60/UBERON_0015060.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015060 * *Label* = sphenoid endochondral element - * *Definition* = A sphenoid bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A sphenoid bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * sphenoid element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * sphenoid bone skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * sphenoid element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * sphenoid bone skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [sphenoid bone pre-cartilage condensation](../../UBERON/91/UBERON_0009191.md)or[sphenoid bone](../../UBERON/77/UBERON_0001677.md)or[sphenoid cartilage element](../../UBERON/93/UBERON_0009193.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015060 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2000460.md b/md/UBERON/60/UBERON_2000460.md index 9267748c5e..5896e8229b 100644 --- a/md/UBERON/60/UBERON_2000460.md +++ b/md/UBERON/60/UBERON_2000460.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000460 * *Label* = adipose fin actinotrichium - * *Definition* = Actinotrichium that is part of the adipose fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the adipose fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [adipose fin](../../UBERON/51/UBERON_2000251.md) ## Other Logical Axioms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2000660.md b/md/UBERON/60/UBERON_2000660.md index 66a3d16e6c..774ebd6eb4 100644 --- a/md/UBERON/60/UBERON_2000660.md +++ b/md/UBERON/60/UBERON_2000660.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000660 * *Label* = epural - * *Definition* = A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia and Schultze_1992] + * *Definition* = A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia and Schultze_1992 ] * *Comment* = The origin of the epurals is unclear, three hypotheses have been proposed: 1) The epurals are modified radials or dorsal radials; 2) the epurals are detached neural spines and may support fin rays; and 3) the epurals are a serial homologue of the supraneuralia. At least in teleosts the epural is a detached neural spine. For details see Schultze and Arratia (1989) and Arratia and Schultze (1992). ## Synonyms - * epiural apophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000660] - * epiural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000660] - * epurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000660[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * ?phural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000138] - * ?pural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * epiural apophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000660 ] + * epiural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000660 ] + * epurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000660, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * ?phural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000138 ] + * ?pural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2000760.md b/md/UBERON/60/UBERON_2000760.md index 880f2e5399..37f381404b 100644 --- a/md/UBERON/60/UBERON_2000760.md +++ b/md/UBERON/60/UBERON_2000760.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000760[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000760, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_2000860.md b/md/UBERON/60/UBERON_2000860.md index 73da49b8e2..4ed9c77862 100644 --- a/md/UBERON/60/UBERON_2000860.md +++ b/md/UBERON/60/UBERON_2000860.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000860[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000860, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_2000960.md b/md/UBERON/60/UBERON_2000960.md index ea04f55859..0c97355d0d 100644 --- a/md/UBERON/60/UBERON_2000960.md +++ b/md/UBERON/60/UBERON_2000960.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000960 * *Label* = sclerotome somite 29 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001060.md b/md/UBERON/60/UBERON_2001060.md index 1dba5e639a..66dfede586 100644 --- a/md/UBERON/60/UBERON_2001060.md +++ b/md/UBERON/60/UBERON_2001060.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001060 * *Label* = basidorsal - * *Definition* = Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * arcualia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001060] + * arcualia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001060 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001160.md b/md/UBERON/60/UBERON_2001160.md index 9aefca3712..f786ff0395 100644 --- a/md/UBERON/60/UBERON_2001160.md +++ b/md/UBERON/60/UBERON_2001160.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001160 * *Label* = dorsal scute - * *Definition* = Scute that is a bony plate that forms in dorsal midline of body margin between the skull and dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scute that is a bony plate that forms in dorsal midline of body margin between the skull and dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001360.md b/md/UBERON/60/UBERON_2001360.md index a398f14708..c9fc313857 100644 --- a/md/UBERON/60/UBERON_2001360.md +++ b/md/UBERON/60/UBERON_2001360.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001360 * *Label* = parapineal organ - * *Definition* = An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001560.md b/md/UBERON/60/UBERON_2001560.md index 99f895aca5..27b0f74cbc 100644 --- a/md/UBERON/60/UBERON_2001560.md +++ b/md/UBERON/60/UBERON_2001560.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001660.md b/md/UBERON/60/UBERON_2001660.md index 110e121ecd..0c101f699a 100644 --- a/md/UBERON/60/UBERON_2001660.md +++ b/md/UBERON/60/UBERON_2001660.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001660 * *Label* = basibranchial tooth - * *Definition* = Tooth that is part of the basibranchial tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is part of the basibranchial tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001760.md b/md/UBERON/60/UBERON_2001760.md index 0b057f5bb1..7e7be90d8a 100644 --- a/md/UBERON/60/UBERON_2001760.md +++ b/md/UBERON/60/UBERON_2001760.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001860.md b/md/UBERON/60/UBERON_2001860.md index 642212f6e8..bac06faafb 100644 --- a/md/UBERON/60/UBERON_2001860.md +++ b/md/UBERON/60/UBERON_2001860.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001860 * *Label* = epibranchial 4-upper pharyngeal toothplate joint - * *Definition* = Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2001960.md b/md/UBERON/60/UBERON_2001960.md index 8d445d7fe3..85efb14b37 100644 --- a/md/UBERON/60/UBERON_2001960.md +++ b/md/UBERON/60/UBERON_2001960.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001960 * *Label* = ceratobranchial 4 bone distal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ceratobranchial 4 bone lateral cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001960] - * ceratobranchial 4 bone posterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001960] + * ceratobranchial 4 bone lateral cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001960 ] + * ceratobranchial 4 bone posterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001960 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2002160.md b/md/UBERON/60/UBERON_2002160.md index 2567bcb018..9b972e4436 100644 --- a/md/UBERON/60/UBERON_2002160.md +++ b/md/UBERON/60/UBERON_2002160.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002160 * *Label* = ural centrum 3 - * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 2 (polyural terminology). Ural centrum 3 articulates with hypural 3 ventrally. Ural centrum 3 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 2 (polyural terminology). Ural centrum 3 articulates with hypural 3 ventrally. Ural centrum 3 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Ural centrum 3 lacks a neural arch in teleosts. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2002260.md b/md/UBERON/60/UBERON_2002260.md index af59e04159..4d27091d09 100644 --- a/md/UBERON/60/UBERON_2002260.md +++ b/md/UBERON/60/UBERON_2002260.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002260 * *Label* = premaxillary-maxillary joint - * *Definition* = Joint that articulates the premaxilla and maxilla. Premaxillary-maxillary joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the premaxilla and maxilla. Premaxillary-maxillary joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [maxilla](../../UBERON/97/UBERON_0002397.md) and [core#connects](../../ts/core#connects.md) some [premaxilla](../../UBERON/44/UBERON_0002244.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2005260.md b/md/UBERON/60/UBERON_2005260.md index 03c155868d..123019283c 100644 --- a/md/UBERON/60/UBERON_2005260.md +++ b/md/UBERON/60/UBERON_2005260.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005260 * *Label* = fenestrated capillary - * *Definition* = Capillary that has pores in the endothelial cells (60-80 nm in diameter) that are spanned by a diaphragm of radially oriented fibrils and allow small molecules and limited amounts of protein to diffuse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary#Types[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fenestra_(histology)] + * *Definition* = Capillary that has pores in the endothelial cells (60-80 nm in diameter) that are spanned by a diaphragm of radially oriented fibrils and allow small molecules and limited amounts of protein to diffuse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary#Types, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fenestra_(histology) ] * *Comment* = Editor notes: the ZFA class from which this was derived is not explicitly classified as a capillary - need to verify for taxon histology differences ## Synonyms - * fenestrated capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63196] - * fenestrated blood vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005260] + * fenestrated capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63196 ] + * fenestrated blood vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005260 ] ## Cross-references * FMA:63196 * TAO:0005260 - * UMLS:C1179615 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fenestrated_Capillary] + * UMLS:C1179615 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fenestrated_Capillary ] * Wikipedia:Capillary#Types * ZFA:0005260 * ncithesaurus:Fenestrated_Capillary @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Blood vessel endothelium that has pores that allow passage small molecules and proteins[ZFA]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2005260 + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_2007060.md b/md/UBERON/60/UBERON_2007060.md index 5c899113fd..2b56d9d1d7 100644 --- a/md/UBERON/60/UBERON_2007060.md +++ b/md/UBERON/60/UBERON_2007060.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3000160.md b/md/UBERON/60/UBERON_3000160.md index b4617cf3b9..0d78e8c990 100644 --- a/md/UBERON/60/UBERON_3000160.md +++ b/md/UBERON/60/UBERON_3000160.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3000260.md b/md/UBERON/60/UBERON_3000260.md index 6024db5c83..e2c3dfabce 100644 --- a/md/UBERON/60/UBERON_3000260.md +++ b/md/UBERON/60/UBERON_3000260.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000260 * *Label* = lamina nariochoanalis - * *Definition* = Free, dorsal margin of the lamina inferior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Free, dorsal margin of the lamina inferior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3000560.md b/md/UBERON/60/UBERON_3000560.md index e473d599bb..11dfb49e14 100644 --- a/md/UBERON/60/UBERON_3000560.md +++ b/md/UBERON/60/UBERON_3000560.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3000660.md b/md/UBERON/60/UBERON_3000660.md index e0fab76625..d8e9c798ed 100644 --- a/md/UBERON/60/UBERON_3000660.md +++ b/md/UBERON/60/UBERON_3000660.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000660 * *Label* = margo choanalis - * *Definition* = Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3010060.md b/md/UBERON/60/UBERON_3010060.md index c1ad4f5826..8304f49549 100644 --- a/md/UBERON/60/UBERON_3010060.md +++ b/md/UBERON/60/UBERON_3010060.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010060 * *Label* = centrale (fore) - * *Definition* = Rectangular cartilage or bone between the distal basal commune and the proximal intermedium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Rectangular cartilage or bone between the distal basal commune and the proximal intermedium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3010160.md b/md/UBERON/60/UBERON_3010160.md index 1f077302fd..9352527c1e 100644 --- a/md/UBERON/60/UBERON_3010160.md +++ b/md/UBERON/60/UBERON_3010160.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000853 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/60/UBERON_3010260.md b/md/UBERON/60/UBERON_3010260.md index a9d59f8aae..d9c22c046e 100644 --- a/md/UBERON/60/UBERON_3010260.md +++ b/md/UBERON/60/UBERON_3010260.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010260 * *Label* = intromittent organ (Ascaphus type) - * *Definition* = A tail like posterior extension of the cloaca supported by a pair of Nobelian rods [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0002-6601-2165] + * *Definition* = A tail like posterior extension of the cloaca supported by a pair of Nobelian rods [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_3010560.md b/md/UBERON/60/UBERON_3010560.md index e95242e21d..1787ae6727 100644 --- a/md/UBERON/60/UBERON_3010560.md +++ b/md/UBERON/60/UBERON_3010560.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_4000160.md b/md/UBERON/60/UBERON_4000160.md index 6ce1dc2dd6..1cb93f7d23 100644 --- a/md/UBERON/60/UBERON_4000160.md +++ b/md/UBERON/60/UBERON_4000160.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000160 * *Label* = anocleithrum - * *Definition* = Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] * *Comment* = In sarcopterygians; analogous in position to postcleithrum in actinopterygians. ## Synonyms - * anocleithra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000160[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * anocleithra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000160, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_4200060.md b/md/UBERON/60/UBERON_4200060.md index 2fd9080b65..c0da019146 100644 --- a/md/UBERON/60/UBERON_4200060.md +++ b/md/UBERON/60/UBERON_4200060.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/60/UBERON_4200160.md b/md/UBERON/60/UBERON_4200160.md index 04fa46e627..e8170917db 100644 --- a/md/UBERON/60/UBERON_4200160.md +++ b/md/UBERON/60/UBERON_4200160.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0000061.md b/md/UBERON/61/UBERON_0000061.md index 6325766265..ff8363cdba 100644 --- a/md/UBERON/61/UBERON_0000061.md +++ b/md/UBERON/61/UBERON_0000061.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000061 * *Label* = anatomical structure - * *Definition* = Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000003] + * *Definition* = Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000003 ] ## Synonyms @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0000161.md b/md/UBERON/61/UBERON_0000161.md index 2b1a3a9919..b76df0ed05 100644 --- a/md/UBERON/61/UBERON_0000161.md +++ b/md/UBERON/61/UBERON_0000161.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000161 * *Label* = orifice - * *Definition* = Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3724] + * *Definition* = Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3724 ] * *Comment* = in FMA, this is an anatomical conduit *space*, rather than anatomical conduit ## Synonyms - * anatomical orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3724] - * anatomical ostium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3724] + * anatomical orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3724 ] + * anatomical ostium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3724 ] * hilum ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0000361.md b/md/UBERON/61/UBERON_0000361.md index 73c7e55832..fa358cb760 100644 --- a/md/UBERON/61/UBERON_0000361.md +++ b/md/UBERON/61/UBERON_0000361.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000361 * *Label* = red bone marrow - * *Definition* = The red vascular substance consisting of connective tissue and blood vessels, containing primitive blood cells, macrophages, megakaryocytes, and fat cells. Red marrow is found in the cavities of many bones. It manufactures and releases leukocytes and erythrocytes into the bloodstream. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/red+marrow] + * *Definition* = The red vascular substance consisting of connective tissue and blood vessels, containing primitive blood cells, macrophages, megakaryocytes, and fat cells. Red marrow is found in the cavities of many bones. It manufactures and releases leukocytes and erythrocytes into the bloodstream. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/red+marrow ] ## Synonyms - * medulla ossium rubra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001160[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * red marrow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001160] + * medulla ossium rubra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001160, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * red marrow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001160 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone marrow](../../UBERON/71/UBERON_0002371.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [hematopoietic cell](../../CL/88/CL_0000988.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0000461.md b/md/UBERON/61/UBERON_0000461.md index e21f0dad09..c73fa745e4 100644 --- a/md/UBERON/61/UBERON_0000461.md +++ b/md/UBERON/61/UBERON_0000461.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000461 * *Label* = minor vestibular gland - * *Definition* = Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] + * *Definition* = Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] * *Comment* = Editors note: compare with Skene's gland. Structure notes: check and part_of relationships to mammalian vulva / urethra ## Synonyms - * glandula vestibular minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20019] - * lesser vestibular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20019] - * female urethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29653] - * Guerin's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] + * glandula vestibular minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20019 ] + * lesser vestibular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20019 ] + * female urethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29653 ] + * Guerin's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] * Gurin's gland - * Schueller's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] - * glandula vestibulares minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] - * paraurethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] - * periurethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] - * skene's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] - * urethral gland of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003116] + * Schueller's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] + * glandula vestibulares minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] + * paraurethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] + * periurethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] + * skene's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] + * urethral gland of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003116 ] ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0000961.md b/md/UBERON/61/UBERON_0000961.md index c073e90266..4520c9c657 100644 --- a/md/UBERON/61/UBERON_0000961.md +++ b/md/UBERON/61/UBERON_0000961.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000961 * *Label* = thoracic ganglion - * *Definition* = The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_ganglion] + * *Definition* = The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_ganglion ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * ganglion of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ganglion thoracicum splanchnicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6471[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ganglion thoracicum splanchnicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6471, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * thoracic paravertebral ganglion * thoracic splanchnic ganglion * thoracic sympathetic ganglion - * thorax ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thorax ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001159 * RETIRED_EHDAA2:0002012 * SCTID:181102004 - * UMLS:C0229010 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Ganglion] + * UMLS:C0229010 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Ganglion ] * VHOG:0000515 * Wikipedia:Thoracic_ganglion * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray849.png/200px-Gray849.png @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001161.md b/md/UBERON/61/UBERON_0001161.md index 6f6940a3c6..f0d46c45eb 100644 --- a/md/UBERON/61/UBERON_0001161.md +++ b/md/UBERON/61/UBERON_0001161.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001161 * *Label* = body of stomach - * *Definition* = The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0014845[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_stomach] + * *Definition* = The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0014845, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_stomach ] * *Comment* = Note that we include this as zone of stomach even though it is not distinguished by gland type ## Synonyms @@ -11,10 +11,10 @@ * corpus gastricum (ventriculare) * gastric body * stomach body - * corpus gastricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000505] - * corpus gastricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_stomach[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus ventriculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000505] - * corpus ventriculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000505] + * corpus gastricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000505 ] + * corpus gastricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_stomach, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus ventriculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000505 ] + * corpus ventriculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000505 ] * gastric corpus ## Cross-references @@ -23,7 +23,7 @@ * FMA:14560 * MA:0002559 * SCTID:362140009 - * UMLS:C0227230 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Body_of_Stomach] + * UMLS:C0227230 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Body_of_Stomach ] * Wikipedia:Body_of_stomach * galen:GastricCorpus * http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001261.md b/md/UBERON/61/UBERON_0001261.md index 75f7178764..00b3414a5a 100644 --- a/md/UBERON/61/UBERON_0001261.md +++ b/md/UBERON/61/UBERON_0001261.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001261 * *Label* = lamina propria of urinary bladder - * *Definition* = A lamina propria that is part of a urinary bladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a urinary bladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bladder lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bladder lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bladder lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bladder lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * urinary bladder lamina propria - * urinary bladder lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary bladder lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urinary bladder lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary bladder lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:30088 * FMA:15935 * MA:0001695 - * UMLS:C1706967 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Lamina_Propria] + * UMLS:C1706967 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Lamina_Propria ] * ncithesaurus:Bladder_Lamina_Propria ## Subsets @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001361.md b/md/UBERON/61/UBERON_0001361.md index 08cba1a8bd..372535b540 100644 --- a/md/UBERON/61/UBERON_0001361.md +++ b/md/UBERON/61/UBERON_0001361.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001361 * *Label* = femoral vein - * *Definition* = In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_vein] + * *Definition* = In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena femoralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena femoralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A07.231.908.314 * OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA * SCTID:362071002 - * UMLS:C0015809 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Femoral_Vein] + * UMLS:C0015809 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Femoral_Vein ] * Wikipedia:Femoral_vein * galen:FemoralVein * http://upload.wikimedia.org/wikipedia/commons/3/34/Femoral_triangle.gif @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Either of the primary veins in the hindlimbs which collect blood from the hindlimb region.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001461.md b/md/UBERON/61/UBERON_0001461.md index 435daba46e..fa64d2047b 100644 --- a/md/UBERON/61/UBERON_0001461.md +++ b/md/UBERON/61/UBERON_0001461.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001461 * *Label* = elbow - * *Definition* = The elbow is the region surrounding the elbow-jointthe ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Elbow] + * *Definition* = The elbow is the region surrounding the elbow-jointthe ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Elbow ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group ## Synonyms @@ -11,7 +11,7 @@ * cubital region * elbow limb segment * elbow region - * articulatio cubiti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Elbow[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio cubiti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Elbow, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -52,8 +52,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cubital * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001561.md b/md/UBERON/61/UBERON_0001561.md index 75c947dd66..4ec49b83c3 100644 --- a/md/UBERON/61/UBERON_0001561.md +++ b/md/UBERON/61/UBERON_0001561.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001561 * *Label* = subcostal artery - * *Definition* = The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostal_artery] + * *Definition* = The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:4613 * MA:0002048 * SCTID:244243008 - * UMLS:C0226293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subcostal_Artery] + * UMLS:C0226293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subcostal_Artery ] * Wikipedia:Subcostal_artery * ncithesaurus:Subcostal_Artery @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001661.md b/md/UBERON/61/UBERON_0001661.md index 3e43d63a20..92e080b20b 100644 --- a/md/UBERON/61/UBERON_0001661.md +++ b/md/UBERON/61/UBERON_0001661.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001661 * *Label* = deep temporal vein - * *Definition* = The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Deep_Temporal_Vein] + * *Definition* = The blood vessels at the vertex and on either side of the head that drain deoxygenated blood into the pterygoid venous plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Deep_Temporal_Vein ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:50954 * MA:0002240 * SCTID:798000 - * UMLS:C0226526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deep_Temporal_Vein] + * UMLS:C0226526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deep_Temporal_Vein ] * ncithesaurus:Deep_Temporal_Vein ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001761.md b/md/UBERON/61/UBERON_0001761.md index 8b07b482fe..aef81daa35 100644 --- a/md/UBERON/61/UBERON_0001761.md +++ b/md/UBERON/61/UBERON_0001761.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001761 * *Label* = future foramen cecum - * *Definition* = A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000826] + * *Definition* = A thickened and indented region in the midline in the floor of the rostral part of the pharyngeal region of the foregut, located between the second and third branchial arches that is the first indication of the thyroid primordium. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.132] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000826 ] ## Synonyms - * foramen caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000725] + * foramen caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000725 ] * foramen cecum * future foramen caecum * future foramen cecum of tongue @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001861.md b/md/UBERON/61/UBERON_0001861.md index b02e4561d7..ef98779ef6 100644 --- a/md/UBERON/61/UBERON_0001861.md +++ b/md/UBERON/61/UBERON_0001861.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001861 * *Label* = ductus reuniens - * *Definition* = The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] + * *Definition* = The canalis reuniens of Hansen is part of the human inner ear. It connects the lower part of the saccule to the ductus cochlearis near its vestibular extremity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] ## Synonyms - * Hensen duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] - * Hensen's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] - * canal of Henson [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] - * canalis reuniens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] - * canalis reuniens of Hensen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canalis_reuniens_of_Hensen] + * Hensen duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] + * Hensen's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] + * canal of Henson [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] + * canalis reuniens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] + * canalis reuniens of Hensen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canalis_reuniens_of_Hensen ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0001961.md b/md/UBERON/61/UBERON_0001961.md index c7bd3d67a0..8e60d9a636 100644 --- a/md/UBERON/61/UBERON_0001961.md +++ b/md/UBERON/61/UBERON_0001961.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001961 * *Label* = mucosa-associated lymphoid tissue - * *Definition* = diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mucosa-associated_lymphoid_tissue] + * *Definition* = diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mucosa-associated_lymphoid_tissue ] * *Comment* = Editor notes: todo - add part relationships to specific layers ## Synonyms * MALT - * epithelio-lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62819] + * epithelio-lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62819 ] * mucosa associated lymphatic tissue * mucosa associated lymphoid tissue - * mucosa-associated lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048537] - * mucosal-associated lymphatic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048537] - * mucosal-associated lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048537] + * mucosa-associated lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048537 ] + * mucosal-associated lymphatic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048537 ] + * mucosal-associated lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048537 ] ## Cross-references * FMA:62819 * MA:0000140 - * UMLS:C0599921 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mucosa-Associated_Lymphoid_Tissue] + * UMLS:C0599921 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mucosa-Associated_Lymphoid_Tissue ] * Wikipedia:Mucosa-associated_lymphoid_tissue * ncithesaurus:Mucosa-Associated_Lymphoid_Tissue @@ -31,7 +31,7 @@ ## Superclasses * [epithelium-associated lymphoid tissue](../../UBERON/69/UBERON_0012069.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mucosa](../../UBERON/44/UBERON_0000344.md) * [site_of](../../core#site/of/core#site_of.md) some [lymphocyte activation](../../GO/49/GO_0046649.md) ## Equivalencies @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002061.md b/md/UBERON/61/UBERON_0002061.md index e156c1eba5..f07b87c5ea 100644 --- a/md/UBERON/61/UBERON_0002061.md +++ b/md/UBERON/61/UBERON_0002061.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002061 * *Label* = truncus arteriosus - * *Definition* = The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Truncus_arteriosus_(embryology)] + * *Definition* = The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Truncus_arteriosus_(embryology) ] * *Comment* = AO notes: assume spelling error for ncit ## Synonyms @@ -18,7 +18,7 @@ * MESH:A07.541.278.930 * OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw * SCTID:308828009 - * UMLS:C1519589 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trancus_Arteriosus] + * UMLS:C1519589 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trancus_Arteriosus ] * Wikipedia:Truncus_arteriosus_(embryology) * ncithesaurus:Trancus_Arteriosus @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002161.md b/md/UBERON/61/UBERON_0002161.md index 83b06589bf..9b31e5f3a2 100644 --- a/md/UBERON/61/UBERON_0002161.md +++ b/md/UBERON/61/UBERON_0002161.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002161 * *Label* = gracile nucleus - * *Definition* = Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_nucleus] + * *Definition* = Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Goll's nucleus - * golls nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2643] - * nucleus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2643] - * Gracile nucleus, principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GR] - * gracile nucleus (Goll) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:766] - * gracile nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:766] - * gracile nucleus, general [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:766] - * nucleus gracilis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gracile_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * golls nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2643 ] + * nucleus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2643 ] + * Gracile nucleus, principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GR ] + * gracile nucleus (Goll) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:766 ] + * gracile nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:766 ] + * gracile nucleus, general [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:766 ] + * nucleus gracilis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gracile_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,9 +27,9 @@ * FMA:72602 * MA:0001038 * NIF_GrossAnatomy:birnlex_2643 - * NeuroNames:766 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2643] + * NeuroNames:766 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2643 ] * SCTID:369071003 - * UMLS:C0228546 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2643] + * UMLS:C0228546 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2643 ] * Wikipedia:Gracile_nucleus * http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray688.png/200px-Gray688.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002261.md b/md/UBERON/61/UBERON_0002261.md index 9f05c75e9b..70ee6b9ec8 100644 --- a/md/UBERON/61/UBERON_0002261.md +++ b/md/UBERON/61/UBERON_0002261.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002261 * *Label* = dorsal root of spinal cord - * *Definition* = The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090208] + * *Definition* = The dorsal roots contain afferent sensory axons. The dorsal roots of each side continue outwards, along the way forming a dorsal root ganglion (also called a spinal ganglion). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090208 ] * *Comment* = FMA xref is 'general anatomical term'. We xref both to ensure equivalence. ## Synonyms - * dorsal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000652] - * dorsal root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5980] - * dorsal spinal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5980] + * dorsal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000652 ] + * dorsal root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5980 ] + * dorsal spinal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5980 ] * dorsal spinal root - * posterior root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_root_of_spinal_nerve] - * radix dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000652] - * radix posterior (nervus spinalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5980] - * radix sensoria (nervus spinalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5980] - * sensory root of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5980] - * dorsal roots [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:drt] - * radix posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_root_of_spinal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radix posterior nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000360] - * root dorsali nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000360] - * root sensoria nervi spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000360] - * sensory spinal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000360] + * posterior root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_root_of_spinal_nerve ] + * radix dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000652 ] + * radix posterior (nervus spinalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5980 ] + * radix sensoria (nervus spinalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5980 ] + * sensory root of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5980 ] + * dorsal roots [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:drt ] + * radix posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_root_of_spinal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radix posterior nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000360 ] + * root dorsali nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000360 ] + * root sensoria nervi spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000360 ] + * sensory spinal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000360 ] ## Cross-references @@ -33,7 +33,7 @@ * NeuroNames:1661 * SCTID:362436008 * TAO:0000652 - * UMLS:C0205955 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve] + * UMLS:C0205955 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve ] * Wikipedia:Posterior_root_of_spinal_nerve * ZFA:0000652 * http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg @@ -59,8 +59,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted][Wikipedia:Posterior_root_of_spinal_nerve]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002361.md b/md/UBERON/61/UBERON_0002361.md index aada987846..da4ec48685 100644 --- a/md/UBERON/61/UBERON_0002361.md +++ b/md/UBERON/61/UBERON_0002361.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002361 * *Label* = pia mater - * *Definition* = The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090209] + * *Definition* = The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090209 ] * *Comment* = Editor note: consider adding adjacency relationship to neuraxis (brain+spinal cord); however note that at this time the meninges may be considered part of the nervous system ## Synonyms * pia mater of neuraxis - * pial membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090209] - * pia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090209] + * pial membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090209 ] + * pia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090209 ] ## Cross-references @@ -38,7 +38,7 @@ * OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA * RETIRED_EHDAA2:0001464 * SCTID:362305004 - * UMLS:C0031869 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pia_Mater] + * UMLS:C0031869 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pia_Mater ] * Wikipedia:Pia_mater * http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray770.png/200px-Gray770.png @@ -62,8 +62,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = delicate innermost layer of the meningesthe membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative[Wikipedia:Pia_mater]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002461.md b/md/UBERON/61/UBERON_0002461.md index e1d635e6d0..b661e9643e 100644 --- a/md/UBERON/61/UBERON_0002461.md +++ b/md/UBERON/61/UBERON_0002461.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002461 * *Label* = anterior abdominal wall muscle - * *Definition* = A muscle organ that is part of a anterior abdominal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a anterior abdominal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle of anterior abdominal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20278] + * muscle of anterior abdominal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20278 ] ## Cross-references * EHDAA2:0000125 * FMA:20278 * MA:0002268 - * UMLS:C1744565 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Abdominal_Wall_Muscle] + * UMLS:C1744565 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Abdominal_Wall_Muscle ] * ncithesaurus:Anterior_Abdominal_Wall_Muscle ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior abdominal wall](../../UBERON/35/UBERON_0006635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002561.md b/md/UBERON/61/UBERON_0002561.md index cc4b70c229..66da9ca18d 100644 --- a/md/UBERON/61/UBERON_0002561.md +++ b/md/UBERON/61/UBERON_0002561.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002561 * *Label* = neuraxis cavity - * *Definition* = The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The cavity that is enclosed by the central nervous system. In vertebrates this is the cavity that includes as parts ventricular cavities and the central canal of the spinal cord that develops from the lumen of the neura tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cavity of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75007] - * cavity of ventricular system of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75007] - * neuraxis cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75007] + * cavity of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75007 ] + * cavity of ventricular system of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75007 ] + * neuraxis cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75007 ] * neuraxis lumen ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [central nervous system](../../UBERON/17/UBERON_0001017.md) and [organ cavity](../../UBERON/58/UBERON_0002558.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002661.md b/md/UBERON/61/UBERON_0002661.md index 39964e5ded..2653fe0da5 100644 --- a/md/UBERON/61/UBERON_0002661.md +++ b/md/UBERON/61/UBERON_0002661.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002661 * *Label* = superior frontal gyrus - * *Definition* = The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_frontal_gyrus] + * *Definition* = The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_frontal_gyrus ] ## Synonyms - * marginal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61857] - * superior frontal convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61857] - * gyrus F1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:83[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:83[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_frontal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * marginal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61857 ] + * superior frontal convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61857 ] + * gyrus F1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:83, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:83, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_frontal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * EFO:0001991 * FMA:61857 * NIF_GrossAnatomy:birnlex_1303 - * NeuroNames:83 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1303] + * NeuroNames:83 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1303 ] * SCTID:279166005 - * UMLS:C0152296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1303] - * UMLS:C0152296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Frontal_Convolution] + * UMLS:C0152296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1303 ] + * UMLS:C0152296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Frontal_Convolution ] * Wikipedia:Superior_frontal_gyrus * http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Superior_frontal_gyrus.png/200px-Superior_frontal_gyrus.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002761.md b/md/UBERON/61/UBERON_0002761.md index 7738275761..ac69126562 100644 --- a/md/UBERON/61/UBERON_0002761.md +++ b/md/UBERON/61/UBERON_0002761.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002761 * *Label* = inferior frontal sulcus - * *Definition* = The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_frontal_sulcus] + * *Definition* = The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_frontal_sulcus ] ## Synonyms - * inferior frontal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83757] - * sulcus f2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83757] - * ifrs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1619[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus frontalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_frontal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus frontalis secundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:63[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior frontal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83757 ] + * sulcus f2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83757 ] + * ifrs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1619, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus frontalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_frontal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus frontalis secundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:63, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,9 +19,9 @@ * BAMS:ifs * FMA:83757 * NIF_GrossAnatomy:birnlex_1619 - * NeuroNames:63 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1619] + * NeuroNames:63 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1619 ] * SCTID:279343004 - * UMLS:C0262251 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Frontal_Sulcus] + * UMLS:C0262251 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Frontal_Sulcus ] * Wikipedia:Inferior_frontal_sulcus * http://upload.wikimedia.org/wikipedia/commons/7/72/Gray726_Inferior_frontal_sulcus.svg * ncithesaurus:Inferior_Frontal_Sulcus @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002861.md b/md/UBERON/61/UBERON_0002861.md index 04f8f50267..d91154d2c3 100644 --- a/md/UBERON/61/UBERON_0002861.md +++ b/md/UBERON/61/UBERON_0002861.md @@ -6,15 +6,15 @@ ## Synonyms - * second sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6343] - * second sacral spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6343] + * second sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6343 ] + * second sacral spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6343 ] ## Cross-references * EMAPA:25171 * FMA:6343 * NIF_GrossAnatomy:birnlex_2629 - * UMLS:C0501721 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2629] + * UMLS:C0501721 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2629 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0002961.md b/md/UBERON/61/UBERON_0002961.md index c4b5ded4e9..15a4575587 100644 --- a/md/UBERON/61/UBERON_0002961.md +++ b/md/UBERON/61/UBERON_0002961.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002961 * *Label* = archicortex - * *Definition* = A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Archicortex] + * *Definition* = A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Archicortex ] ## Synonyms - * archipallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62424] + * archipallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62424 ] * hippocampal pallium - * hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:170] - * intralimbic gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:170] + * hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:170 ] + * intralimbic gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:170 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003061.md b/md/UBERON/61/UBERON_0003061.md index cdeb26ab50..3c90edba58 100644 --- a/md/UBERON/61/UBERON_0003061.md +++ b/md/UBERON/61/UBERON_0003061.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003061 * *Label* = blood island - * *Definition* = Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_island_of_umbilical_vesicle] + * *Definition* = Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP, unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_island_of_umbilical_vesicle ] * *Comment* = AO notes: EHDAA2 distinguishes 3 types, but does not have a superclass. The VHOG class may refer to yolk sac ## Synonyms - * blood islands [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * blood islands [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * ventral lateral plate mesoderm * VBI * caudal hematopoietic tissue @@ -23,7 +23,7 @@ * EHDAA:207 * TAO:0000094 * TE:E5.11.2.0.0.0.4 - * UMLS:C1511224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blood_Island] + * UMLS:C1511224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blood_Island ] * VHOG:0000085 * Wikipedia:Blood_island_of_umbilical_vesicle * XAO:0000067 @@ -58,8 +58,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of intermediate cell mass of mesoderm (TAO:0000033)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Small clusters of mesodermal cells called blood islands mark the embryonic debut of the cardiovascular system (in vertebrates) (reference 1); In birds and mammals, primitive hemangioblasts are extraembryonic, populating the yolk sac as the so-called blood islands (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003161.md b/md/UBERON/61/UBERON_0003161.md index e152979dd2..0570c86ca3 100644 --- a/md/UBERON/61/UBERON_0003161.md +++ b/md/UBERON/61/UBERON_0003161.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003161 * *Label* = dorsal ocellus - * *Definition* = A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004505[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0008056[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HAO:0000661[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ocellus#Ocelli] + * *Definition* = A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004505, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0008056, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HAO:0000661, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ocellus#Ocelli ] ## Synonyms * ocellus - * dorsal ocelli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ocelli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dorsal ocelli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ocelli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003261.md b/md/UBERON/61/UBERON_0003261.md index 2b802dca2f..4c4916dc99 100644 --- a/md/UBERON/61/UBERON_0003261.md +++ b/md/UBERON/61/UBERON_0003261.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003261 * *Label* = thyroid primordium endoderm - * *Definition* = An endoderm that is part of a thyroid primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a thyroid primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endoderm of thyroid primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endoderm of thyroid primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thyroid primordium](../../UBERON/91/UBERON_0003091.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005235 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003361.md b/md/UBERON/61/UBERON_0003361.md index 650900f96e..967d5bf7a7 100644 --- a/md/UBERON/61/UBERON_0003361.md +++ b/md/UBERON/61/UBERON_0003361.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003361 * *Label* = epithelium of sublingual gland - * *Definition* = An epithelium that is part of a sublingual gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a sublingual gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Rivinus'gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Rivinus'gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus sublingualis epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus sublingualis epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of Rivinus'gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of ductus sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of sublingual gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of Rivinus'gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of ductus sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sublingual gland epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sublingual gland epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sublingual duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004559] - * sublingual gland duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004559] + * Rivinus'gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Rivinus'gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus sublingualis epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus sublingualis epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of Rivinus'gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of ductus sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of sublingual gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of Rivinus'gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of ductus sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sublingual gland epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sublingual gland epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sublingual duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004559 ] + * sublingual gland duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004559 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sublingual gland](../../UBERON/32/UBERON_0001832.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003461.md b/md/UBERON/61/UBERON_0003461.md index 3fc0629125..01412bdd9a 100644 --- a/md/UBERON/61/UBERON_0003461.md +++ b/md/UBERON/61/UBERON_0003461.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003461 * *Label* = shoulder bone - * *Definition* = A bone that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: this is a forelimb bone in MA, but this would lead to part-disjointness violations. Subtypes are clavicle, scapula, humerus ## Synonyms - * bone of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003561.md b/md/UBERON/61/UBERON_0003561.md index a63a8476ac..c9cbcdfa72 100644 --- a/md/UBERON/61/UBERON_0003561.md +++ b/md/UBERON/61/UBERON_0003561.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003561 * *Label* = forebrain dura mater - * *Definition* = A dura mater that is part of a forebrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a forebrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dura mater of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forebrain dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * dura mater of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forebrain dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003661.md b/md/UBERON/61/UBERON_0003661.md index 265352a911..ff21f410e8 100644 --- a/md/UBERON/61/UBERON_0003661.md +++ b/md/UBERON/61/UBERON_0003661.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003661 * *Label* = limb muscle - * *Definition* = A muscle organ that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * muscle organ of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * limb skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:exploratory] + * limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * muscle organ of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * limb skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:exploratory ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003861.md b/md/UBERON/61/UBERON_0003861.md index 11f77bf2d1..41e0242f12 100644 --- a/md/UBERON/61/UBERON_0003861.md +++ b/md/UBERON/61/UBERON_0003861.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003861 * *Label* = neural arch - * *Definition* = posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_arch] + * *Definition* = posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_arch ] * *Comment* = Taxon notes: tiny neural arches present in Hagfish (which lack a true vertebraal column). ## Synonyms - * arcus vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_arch] - * arcus vertebrae (vertebralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11946] - * arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * dorsal arcocentrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001066] - * vertebra neural arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001453[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vertebra dorsal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001453] + * arcus vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_arch ] + * arcus vertebrae (vertebralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11946 ] + * arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * dorsal arcocentrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001066 ] + * vertebra neural arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001453, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vertebra dorsal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001453 ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA * SCTID:317373001 * TAO:0001066 - * UMLS:C0223076 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arch_of_the_Vertebra] + * UMLS:C0223076 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arch_of_the_Vertebra ] * VHOG:0001670 * Wikipedia:Vertebral_arch * ZFA:0001066 @@ -57,8 +57,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from basidorsal (TAO:0001060)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) certain common components [of vertebral structure] are found in nearly all vertebrate. A representative vertebra has a vertebral arch or neural arch, which extends dorsally around the spinal cord.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0003961.md b/md/UBERON/61/UBERON_0003961.md index c8a265955b..20691f8c34 100644 --- a/md/UBERON/61/UBERON_0003961.md +++ b/md/UBERON/61/UBERON_0003961.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003961 * *Label* = cingulum of brain - * *Definition* = the white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008232] + * *Definition* = the white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008232 ] ## Synonyms * cingulum - * cingulum bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:cg] + * cingulum bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:cg ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004061.md b/md/UBERON/61/UBERON_0004061.md index a86e6f56b2..987187cfe1 100644 --- a/md/UBERON/61/UBERON_0004061.md +++ b/md/UBERON/61/UBERON_0004061.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004061 * *Label* = neural tube mantle layer - * *Definition* = the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009690] + * *Definition* = the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009690 ] ## Synonyms - * neural tube intermediate zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009690] + * neural tube intermediate zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009690 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004161.md b/md/UBERON/61/UBERON_0004161.md index 8a630eb9f2..f9eddbbbc8 100644 --- a/md/UBERON/61/UBERON_0004161.md +++ b/md/UBERON/61/UBERON_0004161.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004161 * *Label* = septum transversum - * *Definition* = A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[VHOG]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000019[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septum_transversum] + * *Definition* = A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[VHOG]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000019, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septum_transversum ] * *Comment* = Note that in EHDAA2 this is divided into mesenchymal portion and hepatic diverticulum. Development notes: The cranial part of the septum transversum gives rise to the central tendon of the diaphragm and is the origin of the myoblasts that invade the pleuroperitoneal folds resulting in the formation of the muscular diaphragm. The caudal part of the septum transversum is invaded by the hepatic diverticulum which divides within it to form the liver and thus gives rise to the ventral mesentery of the foregut. ## Synonyms - * transverse septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * transverse septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -16,7 +16,7 @@ * EHDAA:736 * EMAPA:16318 * SCTID:308819008 - * UMLS:C0231004 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Septum_Transversum] + * UMLS:C0231004 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Septum_Transversum ] * VHOG:0000019 * Wikipedia:Septum_transversum * ncithesaurus:Septum_Transversum @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart (of other tetrapods) is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004261.md b/md/UBERON/61/UBERON_0004261.md index 09b468e7cb..4f5d03cfae 100644 --- a/md/UBERON/61/UBERON_0004261.md +++ b/md/UBERON/61/UBERON_0004261.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004261 * *Label* = lower leg blood vessel - * *Definition* = A blood vessel that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindlimb zeugopod blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * hindlimb zeugopod blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004361.md b/md/UBERON/61/UBERON_0004361.md index c6a2b87bcf..f1d84fbd7a 100644 --- a/md/UBERON/61/UBERON_0004361.md +++ b/md/UBERON/61/UBERON_0004361.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004361 * *Label* = stylohyoid ligament - * *Definition* = the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009918[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_ligament] + * *Definition* = the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009918, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_ligament ] ## Synonyms - * ligamentum stylohyoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_ligament] - * ligamentum stylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stylohyoid_ligament] - * stylo-hyoid ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002957] + * ligamentum stylohyoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_ligament ] + * ligamentum stylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stylohyoid_ligament ] + * stylo-hyoid ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002957 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004461.md b/md/UBERON/61/UBERON_0004461.md index c07c5931df..32b2b5f491 100644 --- a/md/UBERON/61/UBERON_0004461.md +++ b/md/UBERON/61/UBERON_0004461.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004461 * *Label* = musculature of head - * *Definition* = Any collection of muscles that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * head musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71287] - * muscle group of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71287] - * muscles of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71287] - * musculi capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71287[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of muscles of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71287] + * head musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71287 ] + * muscle group of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71287 ] + * muscles of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71287 ] + * musculi capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71287, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of muscles of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71287 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004561.md b/md/UBERON/61/UBERON_0004561.md index 6d88d50a98..7205b7f0be 100644 --- a/md/UBERON/61/UBERON_0004561.md +++ b/md/UBERON/61/UBERON_0004561.md @@ -7,11 +7,11 @@ ## Synonyms - * common palmar digital venous tributary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22926] - * distal palmar digital vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palmar_digital_veins] - * proper palmal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002126] - * proper palmar vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002126] - * tributary of common palmar digital vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22926] + * common palmar digital venous tributary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22926 ] + * distal palmar digital vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palmar_digital_veins ] + * proper palmal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002126 ] + * proper palmar vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002126 ] + * tributary of common palmar digital vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22926 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004661.md b/md/UBERON/61/UBERON_0004661.md index e25b233d22..b75b7360aa 100644 --- a/md/UBERON/61/UBERON_0004661.md +++ b/md/UBERON/61/UBERON_0004661.md @@ -6,8 +6,8 @@ ## Synonyms - * Crista temporalis (Mandibulae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59484] - * temporal crest of mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59484] + * Crista temporalis (Mandibulae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59484 ] + * temporal crest of mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59484 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004761.md b/md/UBERON/61/UBERON_0004761.md index 23cb25a311..13505ff731 100644 --- a/md/UBERON/61/UBERON_0004761.md +++ b/md/UBERON/61/UBERON_0004761.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004761 * *Label* = cartilaginous neurocranium - * *Definition* = the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chondrocranium] + * *Definition* = the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chondrocranium ] * *Comment* = note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain) ## Synonyms @@ -11,9 +11,9 @@ * cartilaginous chondocranium * cartiligionous skeletal structure of skull * cartilaginous skull - * chondocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chondrocranium] + * chondocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chondrocranium ] * embryonic chondocranium - * neurocranium [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * neurocranium [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -22,7 +22,7 @@ * EHDAA:6031 * FMA:76621 * SCTID:155540009 - * UMLS:C1516496 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chondrocranium] + * UMLS:C1516496 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chondrocranium ] * Wikipedia:Chondrocranium * XAO:0003059 * ncithesaurus:Chondrocranium @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0004861.md b/md/UBERON/61/UBERON_0004861.md index f77d70954d..04a41c62f6 100644 --- a/md/UBERON/61/UBERON_0004861.md +++ b/md/UBERON/61/UBERON_0004861.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004861 * *Label* = right lung alveolus - * *Definition* = An alveolus that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An alveolus that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * alveolus of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolus of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:19188 * EMAPA:19190 * MA:0001786 - * UMLS:C1709959 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung_Alveolus] + * UMLS:C1709959 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung_Alveolus ] * ncithesaurus:Right_Lung_Alveolus ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolus](../../UBERON/15/UBERON_0003215.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005061.md b/md/UBERON/61/UBERON_0005061.md index bc7a92b547..55a162f9a4 100644 --- a/md/UBERON/61/UBERON_0005061.md +++ b/md/UBERON/61/UBERON_0005061.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005061 * *Label* = neural groove - * *Definition* = The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001842[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_groove] + * *Definition* = The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001842, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_groove ] ## Synonyms @@ -13,7 +13,7 @@ * AAO:0011071 * NeuroNames:1363 * SCTID:361463007 - * UMLS:C0814992 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Groove] + * UMLS:C0814992 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Groove ] * Wikipedia:Neural_groove * XAO:0000248 * ncithesaurus:Neural_Groove @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The neural groove is a shallow median groove between the neural folds of an embryo. The neural folds are two longitudinal ridges that are caused by a folding up of the ectoderm in front of the primitive streak of the developing embryo. The groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or canal, the ectodermal wall of which forms the rudiment of the nervous system. After the coalescence of the neural folds over the anterior end of the primitive streak, the blastopore no longer opens on the surface but into the closed canal of the neural tube, and thus a transitory communication, the neurenteric canal, is established between the neural tube and the primitive digestive tube. The coalescence of the neural folds occurs first in the region of the hind-brain, and from there extends forward and backward; toward the end of the third week the front opening (anterior neuropore) of the tube finally closes at the anterior end of the future brain, and forms a recess which is in contact, for a time, with the overlying ectoderm; the hinder part of the neural groove presents for a time a rhomboidal shape, and to this expanded portion the term sinus rhomboidalis has been applied. Before the neural groove is closed a ridge of ectodermal cells appears along the prominent margin of each neural fold; this is termed the neural crest or ganglion ridge, and from it the spinal and cranial nerve ganglia and the ganglia of the sympathetic nervous system are developed. By the upward growth of the mesoderm the neural tube is ultimately separated from the overlying ectoderm. The cephalic end of the neural groove exhibits several dilatations, which, when the tube is closed, assume the form of three vesicles; these constitute the three primary cerebral vesicles, and correspond respectively to the future fore-brain (prosencephalon), mid-brain (mesencephalon), and hind-brain (rhombencephalon). The walls of the vesicles are developed into the nervous tissue and neuroglia of the brain, and their cavities are modified to form its ventricles. The remainder of the tube forms the medulla spinalis or spinal cord; from its ectodermal wall the nervous and neuroglial elements of the medulla spinalis are developed while the cavity persists as the central canal[Wikipedia:Neural_groove]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005161.md b/md/UBERON/61/UBERON_0005161.md index a147c2c6f6..295c91a57a 100644 --- a/md/UBERON/61/UBERON_0005161.md +++ b/md/UBERON/61/UBERON_0005161.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005161 * *Label* = pelvic spur - * *Definition* = Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating, as well as combat with other males in some species [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pelvic_spur] + * *Definition* = Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating, as well as combat with other males in some species [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pelvic_spur ] * *Comment* = This class refers to the external portion and its corneal covering rather than the combined pelvis plus femur. ## Synonyms - * anal spur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_spur] + * anal spur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_spur ] * cloacal spur ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005261.md b/md/UBERON/61/UBERON_0005261.md index 9490a5810b..2c21ae07c2 100644 --- a/md/UBERON/61/UBERON_0005261.md +++ b/md/UBERON/61/UBERON_0005261.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005261 * *Label* = atrium cardiac jelly - * *Definition* = A cardiac jelly that is part of an atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac jelly that is part of an atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac jelly](../../UBERON/06/UBERON_0003906.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cardiac jelly that is part of the atrium. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005361.md b/md/UBERON/61/UBERON_0005361.md index 4284b97f87..bc14684296 100644 --- a/md/UBERON/61/UBERON_0005361.md +++ b/md/UBERON/61/UBERON_0005361.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005361 * *Label* = superior glossopharyngeal IX ganglion - * *Definition* = the upper ganglion of the glossopharyngeal nerve[MP]. is situated in the upper part of the groove in which the glossopharyngeal nerve is lodged during its passage through the jugular foramen. It is very small, and is usually regarded as a detached portion of the inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001097[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve] + * *Definition* = the upper ganglion of the glossopharyngeal nerve[MP]. is situated in the upper part of the groove in which the glossopharyngeal nerve is lodged during its passage through the jugular foramen. It is very small, and is usually regarded as a detached portion of the inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001097, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve ] * *Comment* = Synonym modified from WP original ## Synonyms - * Ehrenritter's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * ganglion superius (nervus glossopharyngeus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * ganglion superius nervus glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glossopharyngeal nerve jugular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * glossopharyngeal nerve superior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * intracranial ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001097] - * ninth cranial nerve superior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * superior ganglion of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * superior glossopharyngeal ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001097] - * superior glossopharyngeal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53474] - * superior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001097] - * ganglion superius nervi glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glossopharyngeal IX superior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000744] - * jugular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001097] - * superior petrosal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve] + * Ehrenritter's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * ganglion superius (nervus glossopharyngeus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * ganglion superius nervus glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glossopharyngeal nerve jugular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * glossopharyngeal nerve superior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * intracranial ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001097 ] + * ninth cranial nerve superior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * superior ganglion of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * superior glossopharyngeal ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001097 ] + * superior glossopharyngeal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53474 ] + * superior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001097 ] + * ganglion superius nervi glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glossopharyngeal IX superior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000744 ] + * jugular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001097 ] + * superior petrosal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ganglion_of_glossopharyngeal_nerve ] ## Cross-references @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005461.md b/md/UBERON/61/UBERON_0005461.md index 641e576e54..db9fbcbe51 100644 --- a/md/UBERON/61/UBERON_0005461.md +++ b/md/UBERON/61/UBERON_0005461.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005461 * *Label* = levator scapulae muscle - * *Definition* = An axial muscle that originates in the cervical vertebraae inserts on the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An axial muscle that originates in the cervical vertebraae inserts on the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Axial muscle group[Kardong] ## Synonyms - * levator scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32519] - * levator scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_scapulae_muscle] - * levator scapulae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_scapulae_muscle] - * levator scapul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_scapulae_muscle] - * musculus levator scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_scapulae_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * levator scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32519 ] + * levator scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_scapulae_muscle ] + * levator scapulae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_scapulae_muscle ] + * levator scapul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_scapulae_muscle ] + * musculus levator scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_scapulae_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005561.md b/md/UBERON/61/UBERON_0005561.md index 5bf16a3ee5..9b634b99ad 100644 --- a/md/UBERON/61/UBERON_0005561.md +++ b/md/UBERON/61/UBERON_0005561.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral wall telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000785] + * lateral wall telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000785 ] ## Cross-references @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lateral wall that is part of the telencephalon. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0005661.md b/md/UBERON/61/UBERON_0005661.md index 1c71a032e3..e069e5393a 100644 --- a/md/UBERON/61/UBERON_0005661.md +++ b/md/UBERON/61/UBERON_0005661.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005661 * *Label* = 3rd arch ectoderm - * *Definition* = An ectoderm that is part of a pharyngeal arch 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a pharyngeal arch 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd pharyngeal arch ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000946] + * 3rd pharyngeal arch ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000946 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006061.md b/md/UBERON/61/UBERON_0006061.md index 409b4176bd..81728bcf03 100644 --- a/md/UBERON/61/UBERON_0006061.md +++ b/md/UBERON/61/UBERON_0006061.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006061 * *Label* = process of vertebra - * *Definition* = A process projection from a part of the vertebra such as centrum or arches. Examples: transverse process, diapophyses, parapophyses, and zygapophyses (both the cranial zygapophyses and the caudal zygapophyses). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_column#Structure_of_individual_vertebrae] + * *Definition* = A process projection from a part of the vertebra such as centrum or arches. Examples: transverse process, diapophyses, parapophyses, and zygapophyses (both the cranial zygapophyses and the caudal zygapophyses). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_column#Structure_of_individual_vertebrae ] ## Synonyms * vertebra process - * vertebral process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24530] + * vertebral process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24530 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006261.md b/md/UBERON/61/UBERON_0006261.md index 7b2f955e1f..df9c4610d0 100644 --- a/md/UBERON/61/UBERON_0006261.md +++ b/md/UBERON/61/UBERON_0006261.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006261 * *Label* = male genital tubercle - * *Definition* = A differentiated genital tubercle that is part of a male reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A differentiated genital tubercle that is part of a male reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * genital tubercle of male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17969] + * genital tubercle of male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17969 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [differentiated genital tubercle](../../UBERON/57/UBERON_0011757.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006461.md b/md/UBERON/61/UBERON_0006461.md index 3b8f1ec30d..c4d9de1e59 100644 --- a/md/UBERON/61/UBERON_0006461.md +++ b/md/UBERON/61/UBERON_0006461.md @@ -6,16 +6,16 @@ ## Synonyms - * S2 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256627] - * S2 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1539] - * second sacral spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1539] + * S2 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256627 ] + * S2 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1539 ] + * second sacral spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1539 ] ## Cross-references * FMA:256627 * NIF_GrossAnatomy:birnlex_1539 * SCTID:278781000 - * UMLS:C0457877 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1539] + * UMLS:C0457877 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1539 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006561.md b/md/UBERON/61/UBERON_0006561.md index 6f90cb7411..930c509e9c 100644 --- a/md/UBERON/61/UBERON_0006561.md +++ b/md/UBERON/61/UBERON_0006561.md @@ -6,7 +6,7 @@ ## Synonyms - * non-lymphatic lymphoid system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74623] + * non-lymphatic lymphoid system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74623 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006661.md b/md/UBERON/61/UBERON_0006661.md index f194262cfd..3423787f8d 100644 --- a/md/UBERON/61/UBERON_0006661.md +++ b/md/UBERON/61/UBERON_0006661.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006661 * *Label* = epicranial aponeurosis - * *Definition* = The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica] + * *Definition* = The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica ] ## Synonyms - * aponeurosis epicranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46768[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aponeurosis of epicranius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46768] - * epicranial aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46768] - * epicranius aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46768] - * galea aponeurotica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46768] - * cranial aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica] - * epicranial aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica] - * galea aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica] - * galea aponeurotica; aponeurosis epicranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * galeal aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Galea_aponeurotica] + * aponeurosis epicranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46768, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aponeurosis of epicranius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46768 ] + * epicranial aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46768 ] + * epicranius aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46768 ] + * galea aponeurotica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46768 ] + * cranial aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica ] + * epicranial aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica ] + * galea aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica ] + * galea aponeurotica; aponeurosis epicranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * galeal aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Galea_aponeurotica ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006761.md b/md/UBERON/61/UBERON_0006761.md index 14c20efb46..d8a52ca796 100644 --- a/md/UBERON/61/UBERON_0006761.md +++ b/md/UBERON/61/UBERON_0006761.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006761 * *Label* = corneo-scleral junction - * *Definition* = The corneal limbus is the border of the cornea and the sclera (the white of the eye). The limbus is a common site for the occurrence of corneal epithelial neoplasm. Limbus contains radially oriented fibrovascular ridges known as the palisades of Vogt that may harbour a stem cell population[WP]. An annular transitional zone, approximately 1 mm wide, between the cornea and the bulbar conjunctiva and sclera. It is highly vascular and is involved in the metabolism of the cornea. It is ophthalmologically significant in that it appears on the outer surface of the eyeball as a slight furrow, marking the line between the clear cornea and the sclera. (Dictionary of Visual Science, 3d ed)[MeSH] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_limbus] + * *Definition* = The corneal limbus is the border of the cornea and the sclera (the white of the eye). The limbus is a common site for the occurrence of corneal epithelial neoplasm. Limbus contains radially oriented fibrovascular ridges known as the palisades of Vogt that may harbour a stem cell population[WP]. An annular transitional zone, approximately 1 mm wide, between the cornea and the bulbar conjunctiva and sclera. It is highly vascular and is involved in the metabolism of the cornea. It is ophthalmologically significant in that it appears on the outer surface of the eyeball as a slight furrow, marking the line between the clear cornea and the sclera. (Dictionary of Visual Science, 3d ed)[MeSH] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_limbus ] * *Comment* = This location has parts such as blood vessels etc. See PMC2868485, PMID:2695343 ## Synonyms - * corneal limbus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58342] - * corneal-scleral limbus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17051547] - * sclerocorneal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58342] - * corneal limbus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:896] - * corneoscleral junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:896] - * limbus corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_limbus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * limbus corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_limbus] - * sclerocorneal limbus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:896] + * corneal limbus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58342 ] + * corneal-scleral limbus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17051547 ] + * sclerocorneal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58342 ] + * corneal limbus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:896 ] + * corneoscleral junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:896 ] + * limbus corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_limbus ] + * limbus corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_limbus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sclerocorneal limbus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:896 ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [connects](../../ts/core#connects.md) some [cornea](../../UBERON/64/UBERON_0000964.md) and [connects](../../ts/core#connects.md) some [sclera](../../UBERON/73/UBERON_0001773.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0006861.md b/md/UBERON/61/UBERON_0006861.md index 5907406dd9..9a16a2d26d 100644 --- a/md/UBERON/61/UBERON_0006861.md +++ b/md/UBERON/61/UBERON_0006861.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006861 * *Label* = diaphysis proper - * *Definition* = Subdivision of long bone which forms the part of the bone between two metaphyses. Note that the diaphysis includes the metaphyses, but the diaphysis proper excludes these. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of long bone which forms the part of the bone between two metaphyses. Note that the diaphysis includes the metaphyses, but the diaphysis proper excludes these. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803 ## Synonyms - * body proper of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32688] - * shaft proper of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32688] - * long bone diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002803[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * body proper of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32688 ] + * shaft proper of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32688 ] + * long bone diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002803, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0007161.md b/md/UBERON/61/UBERON_0007161.md index 882f252360..41672adc64 100644 --- a/md/UBERON/61/UBERON_0007161.md +++ b/md/UBERON/61/UBERON_0007161.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0007261.md b/md/UBERON/61/UBERON_0007261.md index 4dc7060451..ee9de36d0b 100644 --- a/md/UBERON/61/UBERON_0007261.md +++ b/md/UBERON/61/UBERON_0007261.md @@ -6,8 +6,8 @@ ## Synonyms - * intervertebral disc of fourth cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13897] - * intervertebral disk, C4-C5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13897] + * intervertebral disc of fourth cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13897 ] + * intervertebral disk, C4-C5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13897 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 4](../../UBERON/13/UBERON_0004613.md) and [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 5](../../UBERON/14/UBERON_0004614.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0007361.md b/md/UBERON/61/UBERON_0007361.md index 49dc9b7ab4..08583ba3b4 100644 --- a/md/UBERON/61/UBERON_0007361.md +++ b/md/UBERON/61/UBERON_0007361.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007361 * *Label* = ruminant reticulum - * *Definition* = The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.869.697[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticulum_(anatomy)] + * *Definition* = The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.869.697, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticulum_(anatomy) ] ## Synonyms - * reticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000347[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * reticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000347, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references * BTO:0000347 * MESH:A13.869.697 * SCTID:23703003 - * UMLS:C0035295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Reticulum] + * UMLS:C0035295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Reticulum ] * Wikipedia:Reticulum_(anatomy) * http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png * ncithesaurus:Reticulum @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0008261.md b/md/UBERON/61/UBERON_0008261.md index 6384d34d27..9a00edce8d 100644 --- a/md/UBERON/61/UBERON_0008261.md +++ b/md/UBERON/61/UBERON_0008261.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008261 * *Label* = pedicellaria - * *Definition* = a small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicellaria] + * *Definition* = a small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicellaria ] ## Synonyms - * pedicellariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicellaria[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * pedicellariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicellaria, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0008461.md b/md/UBERON/61/UBERON_0008461.md index 1e575ab1fe..330eab713a 100644 --- a/md/UBERON/61/UBERON_0008461.md +++ b/md/UBERON/61/UBERON_0008461.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008461 * *Label* = inferior articular process of lumbar vertebra - * *Definition* = An inferior articular process of vertebra that is part of a lumbar vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An inferior articular process of vertebra that is part of a lumbar vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * caudal articular process of lumbar vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16127] + * caudal articular process of lumbar vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16127 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inferior articular process of vertebra](../../UBERON/80/UBERON_0001080.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0008861.md b/md/UBERON/61/UBERON_0008861.md index 444174b87d..3c178d1e35 100644 --- a/md/UBERON/61/UBERON_0008861.md +++ b/md/UBERON/61/UBERON_0008861.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008861 * *Label* = pyloric gastric gland - * *Definition* = the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010797[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_gland] + * *Definition* = the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010797, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_gland ] * *Comment* = Editors note: check relationship to pylorus vs antrum ## Synonyms - * glandula pylorica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14922] - * pyloric antrum gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14922] + * glandula pylorica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14922 ] + * pyloric antrum gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14922 ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:27523 * FMA:14922 * SCTID:70710007 - * UMLS:C0227239 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pyloric_Gland] + * UMLS:C0227239 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pyloric_Gland ] * Wikipedia:Pyloric_gland * http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png * ncithesaurus:Pyloric_Gland @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gastric gland](../../UBERON/25/UBERON_0000325.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pylorus](../../UBERON/66/UBERON_0001166.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0008961.md b/md/UBERON/61/UBERON_0008961.md index 668e9ece03..10ce15d80e 100644 --- a/md/UBERON/61/UBERON_0008961.md +++ b/md/UBERON/61/UBERON_0008961.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008961 * *Label* = parabronchus - * *Definition* = tertiary bronchus in the avian lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/parabronchi] + * *Definition* = tertiary bronchus in the avian lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/parabronchi ] ## Synonyms * neopulmonic parabronchus * paleopulmonic parabronchus - * parabronchi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * parabronchi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0009061.md b/md/UBERON/61/UBERON_0009061.md index 612c95834f..32ced730ac 100644 --- a/md/UBERON/61/UBERON_0009061.md +++ b/md/UBERON/61/UBERON_0009061.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0009661.md b/md/UBERON/61/UBERON_0009661.md index 64737f9dc9..29387bf6b6 100644 --- a/md/UBERON/61/UBERON_0009661.md +++ b/md/UBERON/61/UBERON_0009661.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009661 * *Label* = midbrain nucleus - * *Definition* = Nucleus located in the midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nucleus located in the midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0009861.md b/md/UBERON/61/UBERON_0009861.md index cc8c341635..47967ef34c 100644 --- a/md/UBERON/61/UBERON_0009861.md +++ b/md/UBERON/61/UBERON_0009861.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009861 * *Label* = ascidian neural complex - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21558186] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21558186 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0009961.md b/md/UBERON/61/UBERON_0009961.md index 71018ba3f9..62bbb02604 100644 --- a/md/UBERON/61/UBERON_0009961.md +++ b/md/UBERON/61/UBERON_0009961.md @@ -6,9 +6,9 @@ ## Synonyms - * longitudinal muscle layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63573] - * outer longitudinal muscle layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63573] - * esophagus smooth muscle longitudinal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001575] + * longitudinal muscle layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63573 ] + * outer longitudinal muscle layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63573 ] + * esophagus smooth muscle longitudinal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001575 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010061.md b/md/UBERON/61/UBERON_0010061.md index c0ec72569f..673619af41 100644 --- a/md/UBERON/61/UBERON_0010061.md +++ b/md/UBERON/61/UBERON_0010061.md @@ -8,7 +8,7 @@ * nasopharyngeal luman * nasopharynx cavity - * nasopharynx lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55094] + * nasopharynx lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55094 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010161.md b/md/UBERON/61/UBERON_0010161.md index 7128046c99..745be021fc 100644 --- a/md/UBERON/61/UBERON_0010161.md +++ b/md/UBERON/61/UBERON_0010161.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010161 * *Label* = lumen of blood vessel - * *Definition* = An anatomical cavity that surrounded_by a blood vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a blood vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010361.md b/md/UBERON/61/UBERON_0010361.md index 01dfc38d02..e7dad64728 100644 --- a/md/UBERON/61/UBERON_0010361.md +++ b/md/UBERON/61/UBERON_0010361.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010361 * *Label* = synostosis - * *Definition* = Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7499] + * *Definition* = Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7499 ] ## Synonyms - * bony union [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7499] - * junctura ossea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bony union [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7499 ] + * junctura ossea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010561.md b/md/UBERON/61/UBERON_0010561.md index 0d53b8e168..9cc50cc339 100644 --- a/md/UBERON/61/UBERON_0010561.md +++ b/md/UBERON/61/UBERON_0010561.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010561 * *Label* = pedal digit 5 metatarsal cartilage element - * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 5 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * toe 5 metatarsal cartilage element - * foot digit 5 metatarsal cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 5 metatarsal cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5 mesenchyme](../../UBERON/99/UBERON_0005699.md) and [pedal digit metatarsal cartilage element](../../UBERON/97/UBERON_0010697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010861.md b/md/UBERON/61/UBERON_0010861.md index cf3627e429..e9ae4f757f 100644 --- a/md/UBERON/61/UBERON_0010861.md +++ b/md/UBERON/61/UBERON_0010861.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010861 * *Label* = propatagium - * *Definition* = In bats and pterosaurs, thin web of skin that extends from the shoulder to the wrist anterior to the upper arm and forearm, and is fixed on the neck or skull. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryPo.html] + * *Definition* = In bats and pterosaurs, thin web of skin that extends from the shoulder to the wrist anterior to the upper arm and forearm, and is fixed on the neck or skull. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryPo.html ] * *Comment* = In birds: The triangular fold of skin on leading edge of the wing[http://caiquesite.com/glossary.htm] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0010961.md b/md/UBERON/61/UBERON_0010961.md index b24edefea6..597a9c8043 100644 --- a/md/UBERON/61/UBERON_0010961.md +++ b/md/UBERON/61/UBERON_0010961.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0011161.md b/md/UBERON/61/UBERON_0011161.md index d4524569f9..9ece1658e7 100644 --- a/md/UBERON/61/UBERON_0011161.md +++ b/md/UBERON/61/UBERON_0011161.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011161 * *Label* = spheno-occipital synchondrosis - * *Definition* = the cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull that in humans is usually closed by the age of 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis] + * *Definition* = the cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull that in humans is usually closed by the age of 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [basioccipital bone](../../UBERON/92/UBERON_0001692.md) and [connects](../../ts/core#connects.md) some [basisphenoid bone](../../UBERON/28/UBERON_0006428.md) and [cranial synchondrosis](../../UBERON/25/UBERON_0001725.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0011661.md b/md/UBERON/61/UBERON_0011661.md index d0aa0065fa..18b4366d30 100644 --- a/md/UBERON/61/UBERON_0011661.md +++ b/md/UBERON/61/UBERON_0011661.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011661 * *Label* = xiphiplastron - * *Definition* = A paired plastron element that is in the posterior part of the plastron, posterior to the hypoplastron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A paired plastron element that is in the posterior part of the plastron, posterior to the hypoplastron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011661 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0011861.md b/md/UBERON/61/UBERON_0011861.md index 4073ca1ab5..83e9f0702e 100644 --- a/md/UBERON/61/UBERON_0011861.md +++ b/md/UBERON/61/UBERON_0011861.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011861 * *Label* = aorta collagen fibril - * *Definition* = the connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011640] + * *Definition* = the connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011640 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collagen fibril](../../UBERON/60/UBERON_0011860.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aorta tunica adventitia](../../UBERON/64/UBERON_0004664.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0011961.md b/md/UBERON/61/UBERON_0011961.md index 6b96923ba0..7f4da6a0de 100644 --- a/md/UBERON/61/UBERON_0011961.md +++ b/md/UBERON/61/UBERON_0011961.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011961 * *Label* = articular capsule of hip joint - * *Definition* = The articular capsule (capsular ligament) is strong and dense. Above, it is attached to the margin of the acetabulum 5 to 6 mm. beyond the glenoidal labrum behind; but in front, it is attached to the outer margin of the labrum, and, opposite to the notch where the margin of the cavity is deficient, it is connected to the transverse ligament, and by a few fibers to the edge of the obturator foramen. It surrounds the neck of the femur, and is attached, in front, to the intertrochanteric line; above, to the base of the neck; behind, to the neck, about 1.25 cm. above the intertrochanteric crest; below, to the lower part of the neck, close to the lesser trochanter. From its femoral attachment some of the fibers are reflected upward along the neck as longitudinal bands, termed retinacula. The capsule is much thicker at the upper and forepart of the joint, where the greatest amount of resistance is required; behind and below, it is thin and loose. It consists of two sets of fibers, circular and longitudinal. The circular fibers, zona orbicularis, are most abundant at the lower and back part of the capsule, and form a sling or collar around the neck of the femur. Anteriorly they blend with the deep surface of the iliofemoral ligament, and gain an attachment to the anterior inferior iliac spine. The longitudinal fibers are greatest in amount at the upper and front part of the capsule, where they are reinforced by distinct bands, or accessory ligaments, of which the most important is the iliofemoral ligament. The other accessory bands are known as the pubocapsular and the ischiocapsular ligaments. The external surface of the capsule is rough, covered by numerous muscles, and separated in front from the Psoas major and Iliacus by a bursa, which not infrequently communicates by a circular aperture with the cavity of the joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_hip_joint] + * *Definition* = The articular capsule (capsular ligament) is strong and dense. Above, it is attached to the margin of the acetabulum 5 to 6 mm. beyond the glenoidal labrum behind; but in front, it is attached to the outer margin of the labrum, and, opposite to the notch where the margin of the cavity is deficient, it is connected to the transverse ligament, and by a few fibers to the edge of the obturator foramen. It surrounds the neck of the femur, and is attached, in front, to the intertrochanteric line; above, to the base of the neck; behind, to the neck, about 1.25 cm. above the intertrochanteric crest; below, to the lower part of the neck, close to the lesser trochanter. From its femoral attachment some of the fibers are reflected upward along the neck as longitudinal bands, termed retinacula. The capsule is much thicker at the upper and forepart of the joint, where the greatest amount of resistance is required; behind and below, it is thin and loose. It consists of two sets of fibers, circular and longitudinal. The circular fibers, zona orbicularis, are most abundant at the lower and back part of the capsule, and form a sling or collar around the neck of the femur. Anteriorly they blend with the deep surface of the iliofemoral ligament, and gain an attachment to the anterior inferior iliac spine. The longitudinal fibers are greatest in amount at the upper and front part of the capsule, where they are reinforced by distinct bands, or accessory ligaments, of which the most important is the iliofemoral ligament. The other accessory bands are known as the pubocapsular and the ischiocapsular ligaments. The external surface of the capsule is rough, covered by numerous muscles, and separated in front from the Psoas major and Iliacus by a bursa, which not infrequently communicates by a circular aperture with the cavity of the joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_hip_joint ] ## Synonyms - * capsula articularis coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_hip_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * capsule of hip joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_of_hip_joint] - * fibrous capsule of hip joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42821] + * capsula articularis coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_hip_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * capsule of hip joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_of_hip_joint ] + * fibrous capsule of hip joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42821 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [articular capsule](../../UBERON/84/UBERON_0001484.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip joint](../../UBERON/86/UBERON_0001486.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011961 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0012261.md b/md/UBERON/61/UBERON_0012261.md index 20a1a50397..ecbb1a1c07 100644 --- a/md/UBERON/61/UBERON_0012261.md +++ b/md/UBERON/61/UBERON_0012261.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012261 * *Label* = manual major digit (Aves) - * *Definition* = A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10220427[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PhenoscapeRCN:Oct2012] + * *Definition* = A manual digit found in Aves that is morphologically similar to digit 2 in the standard tetrapod configuration and develops from embryonic digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10220427, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PhenoscapeRCN:Oct2012 ] * *Comment* = Hypothesized to be homologous to manual digit 2 of other tetrapods ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012261 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0012361.md b/md/UBERON/61/UBERON_0012361.md index 580fd53452..38baf2289d 100644 --- a/md/UBERON/61/UBERON_0012361.md +++ b/md/UBERON/61/UBERON_0012361.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012361 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0013161.md b/md/UBERON/61/UBERON_0013161.md index 031ff05395..0008e31ffd 100644 --- a/md/UBERON/61/UBERON_0013161.md +++ b/md/UBERON/61/UBERON_0013161.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013161 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0013561.md b/md/UBERON/61/UBERON_0013561.md index 311e1b058f..655139ada6 100644 --- a/md/UBERON/61/UBERON_0013561.md +++ b/md/UBERON/61/UBERON_0013561.md @@ -6,21 +6,21 @@ ## Synonyms - * B09-43 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1761] - * Brodmann (1909) area 43 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1761] + * B09-43 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1761 ] + * Brodmann (1909) area 43 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1761 ] * Brodmann area 43 - * Brodmann area 43, subcentral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1761] - * area 43 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1761] - * area subcentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1761] - * B09-43 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1761[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 43 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1013] - * brodmann's area 43 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1013] + * Brodmann area 43, subcentral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1761 ] + * area 43 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1761 ] + * area subcentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1761 ] + * B09-43 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1761, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 43 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1013 ] + * brodmann's area 43 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1013 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1761 - * NeuroNames:1013 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1761] - * UMLS:C1272506 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1761] + * NeuroNames:1013 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1761 ] + * UMLS:C1272506 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1761 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013561 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0013761.md b/md/UBERON/61/UBERON_0013761.md index 717fde0eca..33205df8c0 100644 --- a/md/UBERON/61/UBERON_0013761.md +++ b/md/UBERON/61/UBERON_0013761.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013761 * *Label* = cervical cavity - * *Definition* = The cavity formed by the walls of the cervix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The cavity formed by the walls of the cervix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * lumen of cervix of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17746] - * canal of the cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_the_cervix] - * cavity of cervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002249] - * cervical canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_the_cervix] - * cervical canal of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002249] - * endocervical [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_the_cervix] - * endocervical canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002249] - * endocervical canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_the_cervix] - * endocervix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_the_cervix] + * lumen of cervix of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17746 ] + * canal of the cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_the_cervix ] + * cavity of cervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002249 ] + * cervical canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_the_cervix ] + * cervical canal of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002249 ] + * endocervical [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_the_cervix ] + * endocervical canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002249 ] + * endocervical canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_the_cervix ] + * endocervix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_the_cervix ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [uterine cervix](../../UBERON/02/UBERON_0000002.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0014461.md b/md/UBERON/61/UBERON_0014461.md index 97a7ef2092..40048c887a 100644 --- a/md/UBERON/61/UBERON_0014461.md +++ b/md/UBERON/61/UBERON_0014461.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014461 * *Label* = infratemporal fenestra - * *Definition* = An infratemporal fenestra, also called the lateral temporal fenestra is an opening in the skull behind the orbit in some animals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infratemporal_fenestra] + * *Definition* = An infratemporal fenestra, also called the lateral temporal fenestra is an opening in the skull behind the orbit in some animals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infratemporal_fenestra ] ## Synonyms * lateral temporal fenestra * lower temporal fenestra - * infratemporal fenestrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * infratemporal fenestrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014461 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0014761.md b/md/UBERON/61/UBERON_0014761.md index 25e43209eb..0a45628333 100644 --- a/md/UBERON/61/UBERON_0014761.md +++ b/md/UBERON/61/UBERON_0014761.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014761 * *Label* = spinal trigeminal tract - * *Definition* = Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003701[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.sylvius.com/] + * *Definition* = Brainstem tract formed by the central processes of first-order, trigeminal ganglion neurons that extends from the caudal medulla to the midpons. This tract conveys nociceptive and thermal information from the face to second-order neurons in the spinal nucleus of the trigeminal complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003701, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.sylvius.com/ ] ## Synonyms - * descending root of V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * descending tract of trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * spinal V tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * spinal root of trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * spinal tract of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * spinal tract of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * spinal trigeminal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * tract of descending root of trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] - * tractus spinalis nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus spinalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigeminospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1589] + * descending root of V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * descending tract of trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * spinal V tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * spinal root of trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * spinal tract of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * spinal tract of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * spinal trigeminal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * tract of descending root of trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] + * tractus spinalis nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus spinalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigeminospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1589 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014761 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0014861.md b/md/UBERON/61/UBERON_0014861.md index d36e27ed12..9ef6257997 100644 --- a/md/UBERON/61/UBERON_0014861.md +++ b/md/UBERON/61/UBERON_0014861.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014861 * *Label* = glaucothoe stage - * *Definition* = a developmental stage in a hermit crab that has completed the swimming larval stages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclo.co.uk/define/Copepodite] + * *Definition* = a developmental stage in a hermit crab that has completed the swimming larval stages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclo.co.uk/define/Copepodite ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014861 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_0015061.md b/md/UBERON/61/UBERON_0015061.md index 51897fdc00..9b79398a84 100644 --- a/md/UBERON/61/UBERON_0015061.md +++ b/md/UBERON/61/UBERON_0015061.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015061 * *Label* = limb endochondral element - * *Definition* = A limb bone or its cartilage or pre-cartilage precursor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * *Definition* = A limb bone or its cartilage or pre-cartilage precursor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Synonyms - * limb bone endochondral element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] - * limb bone skeletal element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:endochondral] + * limb bone endochondral element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] + * limb bone skeletal element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:endochondral ] ## Cross-references @@ -25,16 +25,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) + * [limb bone pre-cartilage condensation](../../UBERON/82/UBERON_0010882.md)or[limb bone](../../UBERON/28/UBERON_0002428.md)or[limb cartilage element](../../UBERON/81/UBERON_0010881.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015061 + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2000261.md b/md/UBERON/61/UBERON_2000261.md index f431635659..8989b2654e 100644 --- a/md/UBERON/61/UBERON_2000261.md +++ b/md/UBERON/61/UBERON_2000261.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2000461.md b/md/UBERON/61/UBERON_2000461.md index 8c25722225..827adb4bd3 100644 --- a/md/UBERON/61/UBERON_2000461.md +++ b/md/UBERON/61/UBERON_2000461.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000461 * *Label* = Weberian ossicle - * *Definition* = Bone that is an element associated with a Weberian vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bone that is an element associated with a Weberian vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian ossicles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000461[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * Weberian ossicles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000461, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [Weberian ossicle set](../../UBERON/71/UBERON_2001871.md) and [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2000961.md b/md/UBERON/61/UBERON_2000961.md index 46bd82f035..640dc7112a 100644 --- a/md/UBERON/61/UBERON_2000961.md +++ b/md/UBERON/61/UBERON_2000961.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000961 * *Label* = sclerotome somite 4 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001361.md b/md/UBERON/61/UBERON_2001361.md index 36fca25d7e..4ea8afcd3d 100644 --- a/md/UBERON/61/UBERON_2001361.md +++ b/md/UBERON/61/UBERON_2001361.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001361 * *Label* = basiventral - * *Definition* = Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * arcualia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001361] + * arcualia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001361 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001561.md b/md/UBERON/61/UBERON_2001561.md index 2e3e39882d..944ccd798a 100644 --- a/md/UBERON/61/UBERON_2001561.md +++ b/md/UBERON/61/UBERON_2001561.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001661.md b/md/UBERON/61/UBERON_2001661.md index c5ae16c8a9..dd236b2c0b 100644 --- a/md/UBERON/61/UBERON_2001661.md +++ b/md/UBERON/61/UBERON_2001661.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001661 * *Label* = basibranchial tooth plate - * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchials 1-3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchials 1-3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basibranchial 1-3 toothplates [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001661[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * basibranchial toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001661] + * basibranchial 1-3 toothplates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001661, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * basibranchial toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001661 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001761.md b/md/UBERON/61/UBERON_2001761.md index 63acc9f794..2798eefd9d 100644 --- a/md/UBERON/61/UBERON_2001761.md +++ b/md/UBERON/61/UBERON_2001761.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001761 * *Label* = pectoral fin lepidotrichium 1 - * *Definition* = Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched but occasionally may be a massive strong unsegmented element (e.g., spine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched but occasionally may be a massive strong unsegmented element (e.g., spine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001761] + * pectoral fin ray 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001761 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001861.md b/md/UBERON/61/UBERON_2001861.md index 0489120874..05c8fe91c5 100644 --- a/md/UBERON/61/UBERON_2001861.md +++ b/md/UBERON/61/UBERON_2001861.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001861 * *Label* = epibranchial 3-pharyngobranchial 3 joint - * *Definition* = Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [epibranchial 3 bone](../../UBERON/47/UBERON_2001247.md) and [core#connects](../../ts/core#connects.md) some [epibranchial 3 cartilage](../../UBERON/29/UBERON_2001529.md) and [core#connects](../../ts/core#connects.md) some [pharyngobranchial 3 bone](../../UBERON/52/UBERON_2001252.md) and [core#connects](../../ts/core#connects.md) some [pharyngobranchial 3 cartilage](../../UBERON/34/UBERON_2001534.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2001961.md b/md/UBERON/61/UBERON_2001961.md index 8dc2bc31a1..d9b6cc5153 100644 --- a/md/UBERON/61/UBERON_2001961.md +++ b/md/UBERON/61/UBERON_2001961.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001961 * *Label* = ceratobranchial 5 bone distal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ceratobranchial 5 bone lateral cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001961] - * ceratobranchial 5 bone posterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001961] + * ceratobranchial 5 bone lateral cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001961 ] + * ceratobranchial 5 bone posterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001961 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2002061.md b/md/UBERON/61/UBERON_2002061.md index e1e0348c88..3b3f614c94 100644 --- a/md/UBERON/61/UBERON_2002061.md +++ b/md/UBERON/61/UBERON_2002061.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002061 * *Label* = predorsal vertebra - * *Definition* = Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2002161.md b/md/UBERON/61/UBERON_2002161.md index 71f7cdd5fe..8c9eb08a8a 100644 --- a/md/UBERON/61/UBERON_2002161.md +++ b/md/UBERON/61/UBERON_2002161.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002161 * *Label* = ural centrum 4 - * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 3 (polyural terminology) and may fuse to ural centrum 3 early in ontogeny. Ural centrum 4 articulates with hypural 4 ventrally. Ural centrum 4 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 3 (polyural terminology) and may fuse to ural centrum 3 early in ontogeny. Ural centrum 4 articulates with hypural 4 ventrally. Ural centrum 4 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Ural centrum 4 lacks a neural arch in teleosts. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2002261.md b/md/UBERON/61/UBERON_2002261.md index 961572ce90..02deb27aec 100644 --- a/md/UBERON/61/UBERON_2002261.md +++ b/md/UBERON/61/UBERON_2002261.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_2007061.md b/md/UBERON/61/UBERON_2007061.md index 325659b01c..4c233b5ea1 100644 --- a/md/UBERON/61/UBERON_2007061.md +++ b/md/UBERON/61/UBERON_2007061.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3000061.md b/md/UBERON/61/UBERON_3000061.md index 469cdad63c..ed5a66812d 100644 --- a/md/UBERON/61/UBERON_3000061.md +++ b/md/UBERON/61/UBERON_3000061.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3000381 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/61/UBERON_3000161.md b/md/UBERON/61/UBERON_3000161.md index e25da87ada..91c9c79930 100644 --- a/md/UBERON/61/UBERON_3000161.md +++ b/md/UBERON/61/UBERON_3000161.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000161 * *Label* = fenestra endochoanalis - * *Definition* = Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the ventral aspect of the nasal capsule. It contains the apertura nasalis interna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * fenestra exochoanalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000161] + * fenestra exochoanalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000161 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3000561.md b/md/UBERON/61/UBERON_3000561.md index 9e25525bef..3560ad67e9 100644 --- a/md/UBERON/61/UBERON_3000561.md +++ b/md/UBERON/61/UBERON_3000561.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3000661.md b/md/UBERON/61/UBERON_3000661.md index 36568c794f..8cf955b3ae 100644 --- a/md/UBERON/61/UBERON_3000661.md +++ b/md/UBERON/61/UBERON_3000661.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000661 * *Label* = crista vomeri - * *Definition* = Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3000961.md b/md/UBERON/61/UBERON_3000961.md index 560bcaa941..d2929c0ae7 100644 --- a/md/UBERON/61/UBERON_3000961.md +++ b/md/UBERON/61/UBERON_3000961.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000961 * *Label* = external integument structure - * *Definition* = Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Structures of the dermis, epidermis, glands and pigment cells recognizable on the external surfaces of the integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3010061.md b/md/UBERON/61/UBERON_3010061.md index a5bb9f0c25..5a917bc698 100644 --- a/md/UBERON/61/UBERON_3010061.md +++ b/md/UBERON/61/UBERON_3010061.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010061 * *Label* = anterior quadratocranial commissure - * *Definition* = Cartilage that bridges palatoquadrate to ethmoid region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cartilage that bridges palatoquadrate to ethmoid region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_3010161.md b/md/UBERON/61/UBERON_3010161.md index 3e2f49fd88..aae50d750f 100644 --- a/md/UBERON/61/UBERON_3010161.md +++ b/md/UBERON/61/UBERON_3010161.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/61/UBERON_3010661.md b/md/UBERON/61/UBERON_3010661.md index 8365c3744c..5dbb528117 100644 --- a/md/UBERON/61/UBERON_3010661.md +++ b/md/UBERON/61/UBERON_3010661.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010661 * *Label* = ramus nasalis internus - * *Definition* = Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Distal part of the opthalmicus profundus gives rise to 2 ramules: palatinus and cutaneous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_4200061.md b/md/UBERON/61/UBERON_4200061.md index defd3e2aa3..8aae22b6a6 100644 --- a/md/UBERON/61/UBERON_4200061.md +++ b/md/UBERON/61/UBERON_4200061.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/61/UBERON_4200161.md b/md/UBERON/61/UBERON_4200161.md index 45064e6ea5..12989ca060 100644 --- a/md/UBERON/61/UBERON_4200161.md +++ b/md/UBERON/61/UBERON_4200161.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0000062.md b/md/UBERON/62/UBERON_0000062.md index 3e84c59bdc..11d279807b 100644 --- a/md/UBERON/62/UBERON_0000062.md +++ b/md/UBERON/62/UBERON_0000062.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000062 * *Label* = organ - * *Definition* = Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048513[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organ_(anatomy)] + * *Definition* = Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048513, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organ_(anatomy) ] * *Comment* = note that CARO does not include a generic 'organ' class, only simple and compound organ ## Synonyms @@ -22,7 +22,7 @@ * OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA * OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA * SCTID:272625005 - * UMLS:C0178784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Organ] + * UMLS:C0178784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Organ ] * Wikipedia:Organ_(anatomy) * ncithesaurus:Organ @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0000162.md b/md/UBERON/62/UBERON_0000162.md index 6c9b8095e9..3f7cce9c9d 100644 --- a/md/UBERON/62/UBERON_0000162.md +++ b/md/UBERON/62/UBERON_0000162.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000162 * *Label* = cloaca - * *Definition* = Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cloaca] + * *Definition* = Common chamber into which the intestines and excretory system opens. Arises during development in all vertebrates, but in many it becomes subdivided, lost or incorporated into other structures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cloaca ] * *Comment* = Development notes: hindgut endoderm and proctodeal ectoderm. Taxon notes: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. Editor notes: adding df link to embryonic cloaca leads to a cycle in uberon-simple, as cloaca is a suberclass of embryonic cloaca ## Synonyms - * cloacal chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000095] - * vent [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000244] + * cloacal chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000095 ] + * vent [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000244 ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A13.223 * SCTID:362857006 * SCTID:370631000 - * UMLS:C0008987 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cloaca] + * UMLS:C0008987 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cloaca ] * VHOG:0001186 * Wikipedia:Cloaca * XAO:0000244 @@ -48,8 +48,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cloacal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9369 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0000362.md b/md/UBERON/62/UBERON_0000362.md index 5bc194d25a..8208c0d96b 100644 --- a/md/UBERON/62/UBERON_0000362.md +++ b/md/UBERON/62/UBERON_0000362.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000362 * *Label* = renal medulla - * *Definition* = The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_medulla] + * *Definition* = The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_medulla ] ## Synonyms - * kidney medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74268[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medullary pyramids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74268[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * pyramides renales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74268[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * renal medullae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86327[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * renal medullae set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86327[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * renal pyramids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74268[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * renal pyramids set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74268[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * renal marrow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001167] + * kidney medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74268, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medullary pyramids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74268, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * pyramides renales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74268, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * renal medullae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86327, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * renal medullae set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86327, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * renal pyramids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74268, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * renal pyramids set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74268, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * renal marrow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001167 ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0000373 * MESH:A05.810.453.466 * SCTID:30737000 - * UMLS:C0022664 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Medulla] + * UMLS:C0022664 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Medulla ] * Wikipedia:Renal_medulla * galen:MedullaOfKidney * http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0000462.md b/md/UBERON/62/UBERON_0000462.md index 005a7834ec..159195575d 100644 --- a/md/UBERON/62/UBERON_0000462.md +++ b/md/UBERON/62/UBERON_0000462.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000462 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/62/UBERON_0000962.md b/md/UBERON/62/UBERON_0000962.md index 9501f76332..25e19f140c 100644 --- a/md/UBERON/62/UBERON_0000962.md +++ b/md/UBERON/62/UBERON_0000962.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000962 * *Label* = nerve of cervical vertebra - * *Definition* = The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_nerves] + * *Definition* = The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_nerves ] * *Comment* = Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] ## Synonyms - * cervical nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5859] + * cervical nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5859 ] * cervical nerve tree * cervical spinal nerve @@ -19,7 +19,7 @@ * NIF_GrossAnatomy:nlx_anat_20090207 * NeuroNames:2351 * SCTID:360497008 - * UMLS:C0228815 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Nerve] + * UMLS:C0228815 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Nerve ] * Wikipedia:Cervical_nerves * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray795.png/200px-Gray795.png * ncithesaurus:Cervical_Nerve @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001062.md b/md/UBERON/62/UBERON_0001062.md index 3546296f1b..66689dbc0c 100644 --- a/md/UBERON/62/UBERON_0001062.md +++ b/md/UBERON/62/UBERON_0001062.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001062 * *Label* = anatomical entity - * *Definition* = Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62955] + * *Definition* = Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62955 ] ## Synonyms @@ -23,7 +23,7 @@ * NIF_GrossAnatomy:birnlex_6 * TAO:0100000 * TGMA:0001822 - * UMLS:C1515976 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anatomic_Structure_System_or_Substance] + * UMLS:C1515976 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anatomic_Structure_System_or_Substance ] * ZFA:0100000 * ncithesaurus:Anatomic_Structure_System_or_Substance @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001162.md b/md/UBERON/62/UBERON_0001162.md index a26369a436..97a9f6c74c 100644 --- a/md/UBERON/62/UBERON_0001162.md +++ b/md/UBERON/62/UBERON_0001162.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001162 * *Label* = cardia of stomach - * *Definition* = The part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000198[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] + * *Definition* = The part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000198, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] * *Comment* = Editor notes: We follow Kardong in defining stomach regions by glands. Boundary notes: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP]. ## Synonyms @@ -11,14 +11,14 @@ * cardial part of stomach * gastric cardia * pars cardiaca (gaster) - * pars cardiaca gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14561[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001609] - * antrum cardiacum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * antrum cardiacum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] + * pars cardiaca gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14561, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001609 ] + * antrum cardiacum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * antrum cardiacum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * cardiac antrum - * cardiac orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] - * cardial orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardia] + * cardiac orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] + * cardial orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardia ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0001609 * MESH:A03.492.766.163 * SCTID:362138004 - * UMLS:C0007144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardia] + * UMLS:C0007144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardia ] * Wikipedia:Cardia * http://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [cardiac gastric gland](../../UBERON/59/UBERON_0008859.md) and [zone of stomach](../../UBERON/70/UBERON_0009870.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004712 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001262.md b/md/UBERON/62/UBERON_0001262.md index af93590554..618504f54b 100644 --- a/md/UBERON/62/UBERON_0001262.md +++ b/md/UBERON/62/UBERON_0001262.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001262 * *Label* = wall of intestine - * *Definition* = An anatomical wall that is part of a intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editors note: we place two MA classes here due to the official ncit2ma mapping to intestinal wall tissue; not clear how bowel and intestine are different ## Synonyms - * anatomical wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * intestinal wall - * intestine anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intestine anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * intestine wall - * wall of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001525] + * wall of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001525 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:15949 * MA:0001525 * MA:0002693 - * UMLS:C1708548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestinal_Wall_Tissue] + * UMLS:C1708548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestinal_Wall_Tissue ] * ncithesaurus:Intestinal_Wall_Tissue ## Subsets @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001362.md b/md/UBERON/62/UBERON_0001362.md index 35000dee52..65011acded 100644 --- a/md/UBERON/62/UBERON_0001362.md +++ b/md/UBERON/62/UBERON_0001362.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001562.md b/md/UBERON/62/UBERON_0001562.md index e1f3b7fba9..a8853863ab 100644 --- a/md/UBERON/62/UBERON_0001562.md +++ b/md/UBERON/62/UBERON_0001562.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001562 * *Label* = digastric muscle - * *Definition* = The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_muscle] + * *Definition* = The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_muscle ] ## Synonyms - * digastric [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002288] - * musculus digastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * digastric muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_muscle] - * digastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_muscle] - * musculus digastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digastric_muscle] + * digastric [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002288 ] + * musculus digastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digastric muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_muscle ] + * digastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_muscle ] + * musculus digastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digastric_muscle ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:46291 * MA:0002288 * SCTID:244825002 - * UMLS:C0224155 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Digastric_Muscle] + * UMLS:C0224155 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Digastric_Muscle ] * Wikipedia:Digastric_muscle * http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001662.md b/md/UBERON/62/UBERON_0001662.md index 3eb1f2c420..20c365c93a 100644 --- a/md/UBERON/62/UBERON_0001662.md +++ b/md/UBERON/62/UBERON_0001662.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001662 * *Label* = anterior auricular vein - * *Definition* = The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_auricular_veins] + * *Definition* = The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_auricular_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae auriculares anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_auricular_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae auriculares anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_auricular_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50956 * MA:0002083 * SCTID:151602009 - * UMLS:C0226527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Auricular_Vein] + * UMLS:C0226527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Auricular_Vein ] * Wikipedia:Anterior_auricular_veins * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001762.md b/md/UBERON/62/UBERON_0001762.md index 3d5d22e232..8e618ddbbe 100644 --- a/md/UBERON/62/UBERON_0001762.md +++ b/md/UBERON/62/UBERON_0001762.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001762 * *Label* = nasal concha - * *Definition* = In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_concha] + * *Definition* = In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_concha ] * *Comment* = Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here // Turbinals are only ossified in birds and derived synapsids. ## Synonyms * nasal turbinate - * turbinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + palaeos.com/vertebrates/bones/braincase/ethmoid.html] + * turbinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = palaeos.com/vertebrates/bones/braincase/ethmoid.html ] * turbinate - * turbinate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25093] - * concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25093] - * conchae nasales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_concha[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * turbinate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25093 ] + * concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25093 ] + * conchae nasales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_concha, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A02.835.232.781.324.948 * OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA * SCTID:361931007 - * UMLS:C1266928 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Turbinate] + * UMLS:C1266928 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Turbinate ] * Wikipedia:Nasal_concha * http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray153.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001762 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001862.md b/md/UBERON/62/UBERON_0001862.md index a35ea97515..3e47577733 100644 --- a/md/UBERON/62/UBERON_0001862.md +++ b/md/UBERON/62/UBERON_0001862.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001862 * *Label* = vestibular labyrinth - * *Definition* = The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001856] + * *Definition* = The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001856 ] ## Synonyms - * inner ear vestibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000832] + * inner ear vestibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000832 ] * vestibular component - * labyrinthus vestibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001856] + * labyrinthus vestibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001856 ] * vestibular apparatus ## Cross-references @@ -22,7 +22,7 @@ * FMA:61255 * MA:0000245 * SCTID:181188003 - * UMLS:C0042606 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vestibular_Labyrinth] + * UMLS:C0042606 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vestibular_Labyrinth ] * XAO:0004145 * ncithesaurus:Vestibular_Labyrinth @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0001962.md b/md/UBERON/62/UBERON_0001962.md index 400249728a..59da845ed2 100644 --- a/md/UBERON/62/UBERON_0001962.md +++ b/md/UBERON/62/UBERON_0001962.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001962 * *Label* = gut-associated lymphoid tissue - * *Definition* = Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gut-associated_lymphoid_tissue] + * *Definition* = Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gut-associated_lymphoid_tissue ] * *Comment* = Editor notes: phylogenetic relationships to be added. Taxon notes: guts of jawless fish contains cells with lymphocyte-like morphology (Mayer 2002). ## Synonyms @@ -15,7 +15,7 @@ * FMA:62820 * MA:0000136 - * UMLS:C0596638 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gut_Associated_Lymphoid_Tissue] + * UMLS:C0596638 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gut_Associated_Lymphoid_Tissue ] * Wikipedia:Gut-associated_lymphoid_tissue * ncithesaurus:Gut_Associated_Lymphoid_Tissue @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa-associated lymphoid tissue](../../UBERON/61/UBERON_0001961.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002062.md b/md/UBERON/62/UBERON_0002062.md index 568a62673b..965bd49d84 100644 --- a/md/UBERON/62/UBERON_0002062.md +++ b/md/UBERON/62/UBERON_0002062.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002062 * *Label* = endocardial cushion - * *Definition* = The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003197[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrioventricular_cushions[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003197, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrioventricular_cushions, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt. JB: Patterning makes the cushions lay down connective tissue in three domains that force out the local endothelial lining and so the leaflets form ## Synonyms * AV cushion - * atrioventricular cushion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endocardial_cushion] - * cardiac cushion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15797462] - * endocardial cushion tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000434] - * endocardial cushions [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * atrioventricular cushion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endocardial_cushion ] + * cardiac cushion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15797462 ] + * endocardial cushion tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000434 ] + * endocardial cushions [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -56,8 +56,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from endocardial ring (TAO:0005072)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (Cardiac valve formation in vertebrates) In response to a myocardial signal, endocardial cells at chamber boundaries take on a mesenchymal character, delaminate and migrate into the cardiac jelly. There, they form an endocardial cushion that is later remodelled into a valve.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002162.md b/md/UBERON/62/UBERON_0002162.md index bf02dbfd1e..25bdd2f350 100644 --- a/md/UBERON/62/UBERON_0002162.md +++ b/md/UBERON/62/UBERON_0002162.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002162 * *Label* = area postrema - * *Definition* = A small, rounded eminence on each side of the FOURTH VENTRICLE, which receives nerve fibers from the SOLITARY NUCLEUS , SPINAL CORD, and adjacent areas of the MEDULLA. The area postrema lies outside the BLOOD-BRAIN BARRIER and its functions include acting as an emetic chemoreceptor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.132.810.406.286[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Area_postrema] + * *Definition* = A small, rounded eminence on each side of the FOURTH VENTRICLE, which receives nerve fibers from the SOLITARY NUCLEUS , SPINAL CORD, and adjacent areas of the MEDULLA. The area postrema lies outside the BLOOD-BRAIN BARRIER and its functions include acting as an emetic chemoreceptor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.132.810.406.286, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Area_postrema ] * *Comment* = Function notes: vomiting center in humans[WP] ## Synonyms - * AP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2636[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior preoptic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:APO] - * chemoreceptor trigger zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:772] - * red nucleus, parvocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AP] + * AP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2636, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior preoptic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:APO ] + * chemoreceptor trigger zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:772 ] + * red nucleus, parvocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AP ] ## Cross-references @@ -24,11 +24,11 @@ * MA:0001034 * MESH:A08.186.211.132.810.406.286 * NIF_GrossAnatomy:birnlex_2636 - * NeuroNames:772 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2636] + * NeuroNames:772 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2636 ] * SCTID:369039005 * TAO:0005146 - * UMLS:C0228530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2636] - * UMLS:C1289468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2636] + * UMLS:C0228530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2636 ] + * UMLS:C1289468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2636 ] * Wikipedia:Area_postrema * ZFA:0005146 * http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002262.md b/md/UBERON/62/UBERON_0002262.md index 9153a96a86..848088b6cd 100644 --- a/md/UBERON/62/UBERON_0002262.md +++ b/md/UBERON/62/UBERON_0002262.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002262 * *Label* = celiac ganglion - * *Definition* = The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Celiac_ganglia] + * *Definition* = The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Celiac_ganglia ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -19,7 +19,7 @@ * FMA:77570 * MA:0001158 * SCTID:362492008 - * UMLS:C0007571 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coeliac_Ganglion] + * UMLS:C0007571 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coeliac_Ganglion ] * Wikipedia:Celiac_ganglia * http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray848.png/200px-Gray848.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002362.md b/md/UBERON/62/UBERON_0002362.md index 44790d7224..00a2487106 100644 --- a/md/UBERON/62/UBERON_0002362.md +++ b/md/UBERON/62/UBERON_0002362.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002362 * *Label* = arachnoid mater - * *Definition* = A think avascular meningeal layer, between the pia mater and the dural mater. It is separated from the pia mater by the subarachnoid space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arachnoid_mater] + * *Definition* = A think avascular meningeal layer, between the pia mater and the dural mater. It is separated from the pia mater by the subarachnoid space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arachnoid_mater ] ## Synonyms * arachnoid * arachnoid mater of neuraxis - * arachnoid membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090208] - * arachnoidea mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001636] + * arachnoid membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090208 ] + * arachnoidea mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001636 ] ## Cross-references @@ -26,7 +26,7 @@ * NeuroNames:1464 * OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA * SCTID:362304000 - * UMLS:C1510935 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arachnoid_Membrane] + * UMLS:C1510935 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arachnoid_Membrane ] * Wikipedia:Arachnoid_mater * http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray767.png/200px-Gray767.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002462.md b/md/UBERON/62/UBERON_0002462.md index 92f46ebcd2..e204a4a3ce 100644 --- a/md/UBERON/62/UBERON_0002462.md +++ b/md/UBERON/62/UBERON_0002462.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002462 * *Label* = erector spinae muscle group - * *Definition* = A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erector_spinae_muscles] + * *Definition* = A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erector_spinae_muscles ] * *Comment* = AO notes: isa muscle organ in MA. ## Synonyms - * erector spinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002289] - * extensor spinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erector_spinae] - * extensor spinae muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erector_spinae] - * sacrospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * erector spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001652] - * extensor spinae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erector_spinae] - * m. erector spinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Erector_spinae_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * erector spinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002289 ] + * extensor spinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erector_spinae ] + * extensor spinae muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erector_spinae ] + * sacrospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * erector spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001652 ] + * extensor spinae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erector_spinae ] + * m. erector spinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Erector_spinae_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0002289 * OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA * SCTID:244852007 - * UMLS:C0224301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Erector_Spinae] + * UMLS:C0224301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Erector_Spinae ] * VHOG:0000984 * Wikipedia:Erector_spinae_muscles * http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png @@ -57,8 +57,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002562.md b/md/UBERON/62/UBERON_0002562.md index ecaac7fb18..d1d8cda9a0 100644 --- a/md/UBERON/62/UBERON_0002562.md +++ b/md/UBERON/62/UBERON_0002562.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002562 * *Label* = superior frontal sulcus - * *Definition* = The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_frontal_sulcus] + * *Definition* = The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_frontal_sulcus ] ## Synonyms - * sulcus f1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83755] - * sulcus frontalis primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1030] - * sulcus frontalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1030] - * superior frontal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83755] - * sfrs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1030[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus frontalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_frontal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus f1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83755 ] + * sulcus frontalis primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1030 ] + * sulcus frontalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1030 ] + * superior frontal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83755 ] + * sfrs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1030, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus frontalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_frontal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * BAMS:sfs * FMA:83755 * NIF_GrossAnatomy:birnlex_1030 - * NeuroNames:61 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1030] + * NeuroNames:61 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1030 ] * SCTID:279342009 - * UMLS:C0228198 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1030] - * UMLS:C0228198 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Frontal_Sulcus] + * UMLS:C0228198 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1030 ] + * UMLS:C0228198 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Frontal_Sulcus ] * Wikipedia:Superior_frontal_sulcus * http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray726_Superior_frontal_sulcus.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray726_Superior_frontal_sulcus.svg/200px-Gray726_Superior_frontal_sulcus.svg.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002662.md b/md/UBERON/62/UBERON_0002662.md index 418e46203f..7dbe7bada5 100644 --- a/md/UBERON/62/UBERON_0002662.md +++ b/md/UBERON/62/UBERON_0002662.md @@ -6,17 +6,17 @@ ## Synonyms - * superficial pes lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72460] - * mpl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1310[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * pes lemniscus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:532[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superficial pes lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72460 ] + * mpl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1310, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * pes lemniscus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:532, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:mpl * FMA:72460 * NIF_GrossAnatomy:birnlex_1310 - * NeuroNames:532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1310] - * UMLS:C0175410 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1310] + * NeuroNames:532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1310 ] + * UMLS:C0175410 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1310 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002762.md b/md/UBERON/62/UBERON_0002762.md index 1a0d6de6ca..e886db5d3b 100644 --- a/md/UBERON/62/UBERON_0002762.md +++ b/md/UBERON/62/UBERON_0002762.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002762 * *Label* = internal medullary lamina of thalamus - * *Definition* = A medullary lamina that is positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medullary_laminae_of_thalamus] + * *Definition* = A medullary lamina that is positioned between the dorsomedial and ventral nuclei of thalamus, encloses the intralaminar nuclei (centromedian nucleus, paracentral, and central lateral). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medullary_laminae_of_thalamus ] ## Synonyms - * internal medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62079] - * internal medullary lamina of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62079] - * lamina medullaris medialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62079[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris medialis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal medullary lamina of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:im] - * internal medullary lamina of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:iml] + * internal medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62079 ] + * internal medullary lamina of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62079 ] + * lamina medullaris medialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62079, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris medialis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal medullary lamina of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:im ] + * internal medullary lamina of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:iml ] ## Cross-references @@ -22,7 +22,7 @@ * NIF_GrossAnatomy:birnlex_1621 * NeuroNames:368 * SCTID:369161003 - * UMLS:C0228322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1621] + * UMLS:C0228322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1621 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002762 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002862.md b/md/UBERON/62/UBERON_0002862.md index beb9c533b2..211f1ec699 100644 --- a/md/UBERON/62/UBERON_0002862.md +++ b/md/UBERON/62/UBERON_0002862.md @@ -6,15 +6,15 @@ ## Synonyms - * third sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6344] - * third sacral spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6344] + * third sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6344 ] + * third sacral spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6344 ] ## Cross-references * EMAPA:25172 * FMA:6344 * NIF_GrossAnatomy:birnlex_2630 - * UMLS:C0501722 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2630] + * UMLS:C0501722 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2630 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0002962.md b/md/UBERON/62/UBERON_0002962.md index 6b0e3ec9f5..864bbf6dfa 100644 --- a/md/UBERON/62/UBERON_0002962.md +++ b/md/UBERON/62/UBERON_0002962.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002962 * *Label* = adductor pollicis muscle - * *Definition* = In human anatomy, the adductor pollicis muscle is a muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_pollicis_muscle] + * *Definition* = In human anatomy, the adductor pollicis muscle is a muscle in the manus that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_pollicis_muscle ] ## Synonyms - * adductor pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_pollicis_muscle] - * musculus adductor pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_pollicis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adductor pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_pollicis_muscle ] + * musculus adductor pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_pollicis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003062.md b/md/UBERON/62/UBERON_0003062.md index 2c09d479e0..adff59ce18 100644 --- a/md/UBERON/62/UBERON_0003062.md +++ b/md/UBERON/62/UBERON_0003062.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003062 * *Label* = primitive knot - * *Definition* = organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004066[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_knot[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer] + * *Definition* = organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004066, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_knot, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer ] * *Comment* = This class groups together possibly disparate structures, following homology class in vHOG; early development terms need review ## Synonyms - * Hensen node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1312[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_knot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * Hensen's node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1312[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_knot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * Spemann Mangold organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000071[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * Spemann's organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000071[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * embryo organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1312] - * embryonic organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1312] - * embryonic shield [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://zfin.org/zf_info/zfbook/stages/gast.html] - * organizer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000071] - * primitive node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_knot] - * shield [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000071] - * node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16075[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * DMZ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000598] - * dorsal marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000072] - * nodus primitivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primitive_knot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Hensen node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1312, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_knot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * Hensen's node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1312, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_knot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * Spemann Mangold organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000071, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * Spemann's organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000071, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * embryo organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1312 ] + * embryonic organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1312 ] + * embryonic shield [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://zfin.org/zf_info/zfbook/stages/gast.html ] + * organizer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000071 ] + * primitive node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_knot ] + * shield [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000071 ] + * node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16075, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * DMZ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000598 ] + * dorsal marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000072 ] + * nodus primitivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primitive_knot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,7 +35,7 @@ * MESH:A16.254.650 * SCTID:361464001 * TAO:0000071 - * UMLS:C1283999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primitive_Node] + * UMLS:C1283999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primitive_Node ] * VHOG:0000598 * Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer * XAO:0000072 @@ -69,8 +69,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The organizer is a central feature of vertebrate embryogenesis. It was first characterized in functional terms in amphibians by Spemann and Mangold (1924), and homologous tissues have since been identified in representatives of most other vertebrate classes, including mammals (the node), birds (Henson's node) and teleost fish (the embryonic shield).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004018 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003162.md b/md/UBERON/62/UBERON_0003162.md index 6aa9d49852..6081ae8b5b 100644 --- a/md/UBERON/62/UBERON_0003162.md +++ b/md/UBERON/62/UBERON_0003162.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003162 * *Label* = lateral ocellus - * *Definition* = The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HAO:0000481[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ocellus#Ocelli] + * *Definition* = The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HAO:0000481, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ocellus#Ocelli ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003262.md b/md/UBERON/62/UBERON_0003262.md index f37e1dd0c1..06f306a404 100644 --- a/md/UBERON/62/UBERON_0003262.md +++ b/md/UBERON/62/UBERON_0003262.md @@ -7,9 +7,9 @@ ## Synonyms - * amnion mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000118] - * amnion mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesenchyme of amnion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16265] + * amnion mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000118 ] + * amnion mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesenchyme of amnion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16265 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [amnion](../../UBERON/05/UBERON_0000305.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003411 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003362.md b/md/UBERON/62/UBERON_0003362.md index 7fb24ed33b..c316882979 100644 --- a/md/UBERON/62/UBERON_0003362.md +++ b/md/UBERON/62/UBERON_0003362.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003362 * *Label* = epithelium of endolymphatic duct - * *Definition* = An epithelium that is part of a endolymphatic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a endolymphatic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endolymphatic duct epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endolymphatic duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of endolymphatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endolymphatic duct epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endolymphatic duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of endolymphatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endolymphatic duct](../../UBERON/60/UBERON_0001860.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003462.md b/md/UBERON/62/UBERON_0003462.md index a310c171d1..e9c2e1e64d 100644 --- a/md/UBERON/62/UBERON_0003462.md +++ b/md/UBERON/62/UBERON_0003462.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003462 * *Label* = facial bone - * *Definition* = A bone that is part of a facial skeleton [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a facial skeleton [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editors note: test whether 'facial bone' is an exact synonym ## Synonyms - * bone of facial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of viscerocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * facial bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19019] - * facial skeleton bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * viscerocranium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of facial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of viscerocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * facial bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19019 ] + * facial skeleton bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * viscerocranium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:19019 * MA:0001482 * SCTID:181799005 - * UMLS:C0015455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Bone] + * UMLS:C0015455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Bone ] * ncithesaurus:Facial_Bone ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003562.md b/md/UBERON/62/UBERON_0003562.md index 9300cd53c9..0113c857ee 100644 --- a/md/UBERON/62/UBERON_0003562.md +++ b/md/UBERON/62/UBERON_0003562.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003562 * *Label* = midbrain dura mater - * *Definition* = A dura mater that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dura mater of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesencephalon dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000410] + * dura mater of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesencephalon dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000410 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dura mater that is part of the midbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003662.md b/md/UBERON/62/UBERON_0003662.md index 384860d10d..926dc08c2f 100644 --- a/md/UBERON/62/UBERON_0003662.md +++ b/md/UBERON/62/UBERON_0003662.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003662 * *Label* = forelimb muscle - * *Definition* = A muscle organ that is part of a forelimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a forelimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: FMA and MA class actually refer to muscles of entire pectoral complex ## Synonyms - * fore limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * free upper limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37348] - * muscle of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37348] - * muscle of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9621] - * upper limb skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * wing muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wing muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arm muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000141] - * musculature of arm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * musculature of the arm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * fore limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * free upper limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37348 ] + * muscle of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37348 ] + * muscle of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9621 ] + * upper limb skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * wing muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wing muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arm muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000141 ] + * musculature of arm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * musculature of the arm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005634 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003862.md b/md/UBERON/62/UBERON_0003862.md index 3da05f4915..a968640a55 100644 --- a/md/UBERON/62/UBERON_0003862.md +++ b/md/UBERON/62/UBERON_0003862.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003862 * *Label* = pedal digit 4 phalanx - * *Definition* = A phalanx that is part of a foot digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a foot digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit long bone of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001384] - * fourth toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32901] - * hind limb digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * long bone of digit of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of foot digit 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32901] - * foot digit 4 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit long bone of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001384 ] + * fourth toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32901 ] + * hind limb digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * long bone of digit of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of foot digit 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32901 ] + * foot digit 4 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:32901 * MA:0001384 * SCTID:361804008 - * UMLS:C1708086 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_4_Phalanx] + * UMLS:C1708086 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_4_Phalanx ] * ncithesaurus:Foot_Digit_4_Phalanx ## Subsets @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0003962.md b/md/UBERON/62/UBERON_0003962.md index 0e4eafeee6..ea0d6a4168 100644 --- a/md/UBERON/62/UBERON_0003962.md +++ b/md/UBERON/62/UBERON_0003962.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003962 * *Label* = pterygopalatine ganglion - * *Definition* = the small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygopalatine_ganglion] + * *Definition* = the small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygopalatine_ganglion ] ## Synonyms - * Meckel ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314] - * Meckel's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6965] - * nasal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314] - * palatine ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314] - * pterygopalatine ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314] - * sphenopalatine ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008314] - * sphenopalatine parasympathetic ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001889] - * g. pterygopalatinum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygopalatine_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Meckel ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314 ] + * Meckel's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6965 ] + * nasal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314 ] + * palatine ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314 ] + * pterygopalatine ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314 ] + * sphenopalatine ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008314 ] + * sphenopalatine parasympathetic ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001889 ] + * g. pterygopalatinum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygopalatine_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004062.md b/md/UBERON/62/UBERON_0004062.md index d2935a8e65..0ae34c66b4 100644 --- a/md/UBERON/62/UBERON_0004062.md +++ b/md/UBERON/62/UBERON_0004062.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004062 * *Label* = neural tube marginal layer - * *Definition* = the outermost layer of the neural tube that contains nerve fibers and will form the white matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009691] + * *Definition* = the outermost layer of the neural tube that contains nerve fibers and will form the white matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009691 ] ## Synonyms - * neural tube marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009691] + * neural tube marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009691 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004162.md b/md/UBERON/62/UBERON_0004162.md index d8403ae375..aa62e77a63 100644 --- a/md/UBERON/62/UBERON_0004162.md +++ b/md/UBERON/62/UBERON_0004162.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004162 * *Label* = pulmonary myocardium - * *Definition* = The pulmonary myocardium is the myocardial tissue present in the pulmonary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003350] + * *Definition* = The pulmonary myocardium is the myocardial tissue present in the pulmonary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003350 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004262.md b/md/UBERON/62/UBERON_0004262.md index 55cd03369f..22102411f1 100644 --- a/md/UBERON/62/UBERON_0004262.md +++ b/md/UBERON/62/UBERON_0004262.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004262 * *Label* = upper leg skin - * *Definition* = A zone of skin that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free lower limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of Proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hind limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free lower limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of Proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hind limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004362.md b/md/UBERON/62/UBERON_0004362.md index 7c2e9b1864..89c1626a3c 100644 --- a/md/UBERON/62/UBERON_0004362.md +++ b/md/UBERON/62/UBERON_0004362.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004362 * *Label* = pharyngeal arch 1 - * *Definition* = First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:First_pharyngeal_arch] + * *Definition* = First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:First_pharyngeal_arch ] ## Synonyms * 1st pharyngeal arch - * branchial arch 1 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * first branchial arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * branchial arch 1 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * first branchial arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * first pharyngeal arch - * first visceral arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * first visceral arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * mandibular arch - * visceral arch 1 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * 1st arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000006] - * 1st visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000296] - * arcus pharyngeus primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:First_pharyngeal_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * visceral arch 1 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * 1st arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000006 ] + * 1st visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000296 ] + * arcus pharyngeus primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:First_pharyngeal_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * EMAPA:16118 * SCTID:308767008 * TAO:0001595 - * UMLS:C1517197 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:First_Pharyngeal_Arch] + * UMLS:C1517197 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:First_Pharyngeal_Arch ] * VHOG:0000296 * Wikipedia:First_pharyngeal_arch * XAO:0000097 @@ -57,8 +57,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 1 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004462.md b/md/UBERON/62/UBERON_0004462.md index 073d15d40b..fe0dadb6ad 100644 --- a/md/UBERON/62/UBERON_0004462.md +++ b/md/UBERON/62/UBERON_0004462.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004462 * *Label* = musculature of body wall - * *Definition* = Any collection of muscles that is part of a body wall [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a body wall [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * body wall musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86931] + * body wall musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86931 ] * body wall muscles ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [body wall](../../UBERON/09/UBERON_0000309.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004562.md b/md/UBERON/62/UBERON_0004562.md index c86e4d0e56..429a2b0c45 100644 --- a/md/UBERON/62/UBERON_0004562.md +++ b/md/UBERON/62/UBERON_0004562.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004562 * *Label* = digital vein - * *Definition* = Any vein containing deoxygenated blood that is located in a finger or toe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Digital_Vein] + * *Definition* = Any vein containing deoxygenated blood that is located in a finger or toe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Digital_Vein ] * *Comment* = check part_of - do we need term for digit + metacarpal/tarsal bones? ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0002101 - * UMLS:C0447128 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Digital_Vein] + * UMLS:C0447128 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Digital_Vein ] * ncithesaurus:Digital_Vein ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004662.md b/md/UBERON/62/UBERON_0004662.md index 40ae2ca540..07c428aa54 100644 --- a/md/UBERON/62/UBERON_0004662.md +++ b/md/UBERON/62/UBERON_0004662.md @@ -6,12 +6,12 @@ ## Synonyms - * lamina arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11951[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina of vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11951] - * lamina of vertebral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11951] - * neural arch lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000695] - * vertebral lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11951] - * vertebral lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002876] + * lamina arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11951, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina of vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11951 ] + * lamina of vertebral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11951 ] + * neural arch lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000695 ] + * vertebral lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11951 ] + * vertebral lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002876 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired plates that form the neural arch. The lateral margin of each lamina rests dorsal to the superior end of the pedicel, and the medial end fuses to the medial end of the opposite lamina.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0004862.md b/md/UBERON/62/UBERON_0004862.md index 953199c4af..1b1da679ae 100644 --- a/md/UBERON/62/UBERON_0004862.md +++ b/md/UBERON/62/UBERON_0004862.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004862 * *Label* = left lung alveolus - * *Definition* = An alveolus that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An alveolus that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * alveolus of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * alveolus of lobe of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolus of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * alveolus of lobe of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EMAPA:19182 * MA:0001777 - * UMLS:C1708673 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung_Alveolus] + * UMLS:C1708673 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung_Alveolus ] * ncithesaurus:Left_Lung_Alveolus ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolus](../../UBERON/15/UBERON_0003215.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005062.md b/md/UBERON/62/UBERON_0005062.md index b206b479b6..26b895664b 100644 --- a/md/UBERON/62/UBERON_0005062.md +++ b/md/UBERON/62/UBERON_0005062.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005062 * *Label* = neural fold - * *Definition* = One of the two elevated edges of the neural groove[GO,MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001842[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011256[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_fold] + * *Definition* = One of the two elevated edges of the neural groove[GO,MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001842, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011256, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_fold ] ## Synonyms - * medullary fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011256] + * medullary fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011256 ] ## Cross-references @@ -28,7 +28,7 @@ * EMAPA:16528 * NeuroNames:1364 * SCTID:361461009 - * UMLS:C0814993 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Fold] + * UMLS:C0814993 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Fold ] * Wikipedia:Neural_fold * XAO:0004087 * ncithesaurus:Neural_Fold @@ -53,8 +53,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In front of the primitive streak two longitudinal ridges, caused by a folding up of the ectoderm, make their appearance, one on either side of the middle line. These are named the neural folds; they commence some little distance behind the anterior end of the embryonic disk, where they are continuous with each other, and from there gradually extend backward, one on either side of the anterior end of the primitive streak. Also, after differentiation it turns into the neural tubes[Wikipedia:Neural_fold]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005162.md b/md/UBERON/62/UBERON_0005162.md index dd680a6eae..d7f4dd8b82 100644 --- a/md/UBERON/62/UBERON_0005162.md +++ b/md/UBERON/62/UBERON_0005162.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005162 * *Label* = multi cell component structure - * *Definition* = A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0001000] + * *Definition* = A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0001000 ] * *Comment* = AO notes: we go with the FMA classification rather than the CARO one. FMA def: "Anatomical cluster which has as direct parts cell parts from two or more cells." ## Synonyms - * multi-cell-component structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0001000] - * multi-cell-part structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0001000] - * cell part cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83115] + * multi-cell-component structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0001000 ] + * multi-cell-part structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0001000 ] + * cell part cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83115 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005262.md b/md/UBERON/62/UBERON_0005262.md index e4c40c1ea5..8290a80b11 100644 --- a/md/UBERON/62/UBERON_0005262.md +++ b/md/UBERON/62/UBERON_0005262.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005262 * *Label* = ventricle cardiac jelly - * *Definition* = A cardiac jelly that is part of a ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac jelly that is part of a ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac jelly](../../UBERON/06/UBERON_0003906.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cardiac jelly that is part of the ventricle. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005362.md b/md/UBERON/62/UBERON_0005362.md index b4a9b7d96c..9853c44835 100644 --- a/md/UBERON/62/UBERON_0005362.md +++ b/md/UBERON/62/UBERON_0005362.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005362 * *Label* = vagus X ganglion - * *Definition* = a small, elongated ganglion located between the esophagus and aorta, marking the terminus of the recurrent nerve[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vagus_ganglion] + * *Definition* = a small, elongated ganglion located between the esophagus and aorta, marking the terminus of the recurrent nerve[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vagus_ganglion ] ## Synonyms - * ganglion of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53472] - * right glossopharyngeal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53472] - * vagal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007067] + * ganglion of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53472 ] + * right glossopharyngeal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53472 ] + * vagal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007067 ] * vagus ganglion - * vagus neural ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53472] - * gX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007067] - * vagus X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16798] + * vagus neural ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53472 ] + * gX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007067 ] + * vagus X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16798 ] ## Cross-references @@ -32,7 +32,7 @@ ## Superclasses * [epibranchial ganglion](../../UBERON/27/UBERON_0009127.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [vagus nerve](../../UBERON/59/UBERON_0001759.md) ## Equivalencies @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005462.md b/md/UBERON/62/UBERON_0005462.md index 3875ef055d..708f9b44c1 100644 --- a/md/UBERON/62/UBERON_0005462.md +++ b/md/UBERON/62/UBERON_0005462.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005462 * *Label* = lower back - * *Definition* = Subdivision of abdominal segment of trunk which in humans is demarcated from the front of the abdomen by the posterior surface of the anterior layer of the thoracolumbar fascia and the anterior surface of the lumbar vertebral column; together with the front of the abdomen, it constitutes the abdomen[Modified from FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] + * *Definition* = Subdivision of abdominal segment of trunk which in humans is demarcated from the front of the abdomen by the posterior surface of the anterior layer of the thoracolumbar fascia and the anterior surface of the lumbar vertebral column; together with the front of the abdomen, it constitutes the abdomen[Modified from FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] * *Comment* = overlaps with region sometimes called 'loin' ## Synonyms - * abdominal back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * back of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * dorsum of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * lower back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000027] - * lumbar part of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * lumbar region of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * posterior part of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * regio lumbalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lumbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61681] - * loin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001505[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Loin] + * abdominal back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * back of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * dorsum of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * lower back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000027 ] + * lumbar part of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * lumbar region of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * posterior part of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * regio lumbalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lumbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61681 ] + * loin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001505, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Loin ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:61681 * MA:0000027 * SCTID:182343007 - * UMLS:C0024090 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Region] + * UMLS:C0024090 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Region ] * ncithesaurus:Lumbar_Region ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005562.md b/md/UBERON/62/UBERON_0005562.md index 4712e26eb5..26554ee8f1 100644 --- a/md/UBERON/62/UBERON_0005562.md +++ b/md/UBERON/62/UBERON_0005562.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005562 * *Label* = thymus primordium - * *Definition* = A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001077] + * *Definition* = A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001077 ] * *Comment* = Editor notes: we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Development notes: Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. Taxon notes: variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals[ISBN-10:0781714125] ## Synonyms - * thymic primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymic rudiment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001077] + * thymic primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymic rudiment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001077 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0005662.md b/md/UBERON/62/UBERON_0005662.md index 1b80adb0a1..e8bee0260e 100644 --- a/md/UBERON/62/UBERON_0005662.md +++ b/md/UBERON/62/UBERON_0005662.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005662 * *Label* = 4th arch ectoderm - * *Definition* = An ectoderm that is part of a pharyngeal arch 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a pharyngeal arch 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th pharyngeal arch ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001095] + * 4th pharyngeal arch ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001095 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006062.md b/md/UBERON/62/UBERON_0006062.md index 2b97df7233..7e77582a48 100644 --- a/md/UBERON/62/UBERON_0006062.md +++ b/md/UBERON/62/UBERON_0006062.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006062 * *Label* = articular process of vertebra - * *Definition* = Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_and_Maglia_2008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_processes] + * *Definition* = Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_and_Maglia_2008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_processes ] * *Comment* = todo - class as endochondral bone, check species ## Synonyms - * processus articularis (zygapophysis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11952] - * zygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_processes] - * articular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_processes] - * intercalarium articulating process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001549] - * p. articularis vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_processes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus articularis vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_processes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus articularis (zygapophysis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11952 ] + * zygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_processes ] + * articular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_processes ] + * intercalarium articulating process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001549 ] + * p. articularis vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_processes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus articularis vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_processes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006262.md b/md/UBERON/62/UBERON_0006262.md index 93d324887a..b967557649 100644 --- a/md/UBERON/62/UBERON_0006262.md +++ b/md/UBERON/62/UBERON_0006262.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [malleus endochondral element](../../UBERON/18/UBERON_0015018.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006462.md b/md/UBERON/62/UBERON_0006462.md index 82e15ca66d..cf4ce328c8 100644 --- a/md/UBERON/62/UBERON_0006462.md +++ b/md/UBERON/62/UBERON_0006462.md @@ -6,16 +6,16 @@ ## Synonyms - * S3 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256629] - * S3 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1544] - * third sacral spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1544] + * S3 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256629 ] + * S3 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1544 ] + * third sacral spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1544 ] ## Cross-references * FMA:256629 * NIF_GrossAnatomy:birnlex_1544 * SCTID:278782007 - * UMLS:C0457878 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1544] + * UMLS:C0457878 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1544 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006562.md b/md/UBERON/62/UBERON_0006562.md index c42613da52..030cccb2fc 100644 --- a/md/UBERON/62/UBERON_0006562.md +++ b/md/UBERON/62/UBERON_0006562.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006562 * *Label* = pharynx - * *Definition* = The pharynx is the part of the digestive system immediately posterior to the mouth[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060465] + * *Definition* = The pharynx is the part of the digestive system immediately posterior to the mouth[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060465 ] ## Synonyms @@ -36,8 +36,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = branchial * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pharyngeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006662.md b/md/UBERON/62/UBERON_0006662.md index acb87fd224..c60de9233b 100644 --- a/md/UBERON/62/UBERON_0006662.md +++ b/md/UBERON/62/UBERON_0006662.md @@ -6,7 +6,7 @@ ## Synonyms - * musculophrenic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4732] + * musculophrenic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4732 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006762.md b/md/UBERON/62/UBERON_0006762.md index 3df59932fc..ff86b58ba4 100644 --- a/md/UBERON/62/UBERON_0006762.md +++ b/md/UBERON/62/UBERON_0006762.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006762 * *Label* = suspensory ligament of lens - * *Definition* = The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] + * *Definition* = The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] ## Synonyms - * Zinn's membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58838] - * ciliary zonule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58838] - * zonule of Zinn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58838] - * zonules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005573[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ciliary zonule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] - * suspensory ligament of the lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] - * zonula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] - * zonula ciliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * zonula ciliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] - * zonular fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] - * zonule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zonule_of_Zinn] + * Zinn's membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58838 ] + * ciliary zonule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58838 ] + * zonule of Zinn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58838 ] + * zonules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005573, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ciliary zonule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] + * suspensory ligament of the lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] + * zonula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] + * zonula ciliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] + * zonula ciliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * zonular fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] + * zonule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zonule_of_Zinn ] ## Cross-references @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006762 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0006862.md b/md/UBERON/62/UBERON_0006862.md index fb8e8ca057..dac2ab3489 100644 --- a/md/UBERON/62/UBERON_0006862.md +++ b/md/UBERON/62/UBERON_0006862.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006862 * *Label* = diaphysis of femur - * *Definition* = A diaphysis that is part of a femur[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_femur] + * *Definition* = A diaphysis that is part of a femur[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_femur ] ## Synonyms - * body of femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32847] - * corpus femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32847[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * femoral diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32847] + * body of femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32847 ] + * corpus femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32847, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * femoral diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32847 ] * femoral shaft - * shaft of femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32847] + * shaft of femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32847 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body of the femur (or shaft), almost cylindrical in form, is a little broader above than in the center, broadest and somewhat flattened from before backward below. It is slightly arched, so as to be convex in front, and concave behind, where it is strengthened by a prominent longitudinal ridge, the linea aspera. It presents for examination three borders, separating three surfaces. Of the borders, one, the linea aspera, is posterior, one is medial, and the other, lateral[Wikipedia:Body_of_femur]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0007162.md b/md/UBERON/62/UBERON_0007162.md index b7ca728646..0f5f57e725 100644 --- a/md/UBERON/62/UBERON_0007162.md +++ b/md/UBERON/62/UBERON_0007162.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0007262.md b/md/UBERON/62/UBERON_0007262.md index 01a1591f17..ba4f87772a 100644 --- a/md/UBERON/62/UBERON_0007262.md +++ b/md/UBERON/62/UBERON_0007262.md @@ -6,8 +6,8 @@ ## Synonyms - * intervertebral disc of fifth cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13898] - * intervertebral disk, C5-C6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13898] + * intervertebral disc of fifth cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13898 ] + * intervertebral disk, C5-C6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13898 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 5](../../UBERON/14/UBERON_0004614.md) and [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 6](../../UBERON/15/UBERON_0004615.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0007362.md b/md/UBERON/62/UBERON_0007362.md index 63b5f174d9..003580db83 100644 --- a/md/UBERON/62/UBERON_0007362.md +++ b/md/UBERON/62/UBERON_0007362.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007362 * *Label* = omasum - * *Definition* = The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.869.524[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Omasum] + * *Definition* = The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.869.524, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Omasum ] ## Synonyms - * omasum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.869.524] + * omasum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.869.524 ] ## Cross-references @@ -15,7 +15,7 @@ * GAID:1242 * MESH:A13.869.524 * SCTID:410028001 - * UMLS:C0028972 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Omasum] + * UMLS:C0028972 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Omasum ] * Wikipedia:Omasum * http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png * ncithesaurus:Omasum @@ -38,8 +38,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = omasal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0007762.md b/md/UBERON/62/UBERON_0007762.md index ab150d1b84..e47e15ae32 100644 --- a/md/UBERON/62/UBERON_0007762.md +++ b/md/UBERON/62/UBERON_0007762.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007762 * *Label* = metatarsophalangeal joint of pedal digit 5 - * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a metatarsal bone and connects a distal phalanx of pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note the name of the structure in EMAPA is incorrect ## Synonyms - * metatarsophalangeal joint of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35240] - * metatarsophalangeal joint of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35240] - * metatarsophalangeal joint of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35240[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsophalangeal joint of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35240 ] + * metatarsophalangeal joint of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35240 ] + * metatarsophalangeal joint of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35240, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pedal digit 5](../../UBERON/19/UBERON_0004319.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007762 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0007862.md b/md/UBERON/62/UBERON_0007862.md index 314aeaf537..fdb50e5f54 100644 --- a/md/UBERON/62/UBERON_0007862.md +++ b/md/UBERON/62/UBERON_0007862.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007862 * *Label* = perichordal tissue - * *Definition* = Fibrous connective tissue that surrounds the notochord; includes a layer of elastin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000054[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Fibrous connective tissue that surrounds the notochord; includes a layer of elastin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000054, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord. ## Synonyms - * perichordal connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001633] - * perichordal sheath [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * perichordal sheath tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * notochord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * perichordal tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * perichordal connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001633 ] + * perichordal sheath [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * perichordal sheath tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * notochord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * perichordal tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of connective tissue which surrounds the notochord.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: part_of notochord (VSAO:0000032) CHANGED TO: surrounds notochord (UBERON:0002328)[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0008262.md b/md/UBERON/62/UBERON_0008262.md index 2db074abaa..843498f09c 100644 --- a/md/UBERON/62/UBERON_0008262.md +++ b/md/UBERON/62/UBERON_0008262.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0008462.md b/md/UBERON/62/UBERON_0008462.md index 5bf115f9f1..a2953a8d97 100644 --- a/md/UBERON/62/UBERON_0008462.md +++ b/md/UBERON/62/UBERON_0008462.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008462 * *Label* = inferior articular process of cervical vertebra - * *Definition* = An inferior articular process of vertebra that is part of a cervical vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An inferior articular process of vertebra that is part of a cervical vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inferior articular process of vertebra](../../UBERON/80/UBERON_0001080.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical vertebra](../../UBERON/13/UBERON_0002413.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0008862.md b/md/UBERON/62/UBERON_0008862.md index ce3c936c5f..6f6e7024f9 100644 --- a/md/UBERON/62/UBERON_0008862.md +++ b/md/UBERON/62/UBERON_0008862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008862 * *Label* = stomach smooth muscle inner oblique layer - * *Definition* = the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010804] + * *Definition* = the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010804 ] * *Comment* = The only layer of the three which is not seen in other parts of the digestive system[WP]. ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0008962.md b/md/UBERON/62/UBERON_0008962.md index c68fa5fa35..470ea0af41 100644 --- a/md/UBERON/62/UBERON_0008962.md +++ b/md/UBERON/62/UBERON_0008962.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008962 * *Label* = forelimb bone - * *Definition* = A bone that is part of a forelimb region. Examples: any manus phalanx, humerus. Counter-examples: scapula (it is part of the pectoral girdle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a forelimb region. Examples: any manus phalanx, humerus. Counter-examples: scapula (it is part of the pectoral girdle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * free forelimb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * wing bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wing bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * free forelimb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * wing bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wing bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references * GAID:178 * MESH:A02.835.232.087 * SCTID:368532003 - * UMLS:C0003793 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_of_the_Upper_Extremity] + * UMLS:C0003793 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_of_the_Upper_Extremity ] * ncithesaurus:Bone_of_the_Upper_Extremity ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limb bone](../../UBERON/28/UBERON_0002428.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0009062.md b/md/UBERON/62/UBERON_0009062.md index 8667c4b667..0ed768e3fd 100644 --- a/md/UBERON/62/UBERON_0009062.md +++ b/md/UBERON/62/UBERON_0009062.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0009662.md b/md/UBERON/62/UBERON_0009662.md index c1a98570dd..07a35967ce 100644 --- a/md/UBERON/62/UBERON_0009662.md +++ b/md/UBERON/62/UBERON_0009662.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009662 * *Label* = hindbrain nucleus - * *Definition* = Nucleus located within the hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nucleus located within the hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0009862.md b/md/UBERON/62/UBERON_0009862.md index 8c2cb172e8..e0c13f3034 100644 --- a/md/UBERON/62/UBERON_0009862.md +++ b/md/UBERON/62/UBERON_0009862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009862 * *Label* = ascidian cerebral ganglion - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21558186] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21558186 ] * *Comment* = the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007). ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0009962.md b/md/UBERON/62/UBERON_0009962.md index 9406f74e58..146b5b03b8 100644 --- a/md/UBERON/62/UBERON_0009962.md +++ b/md/UBERON/62/UBERON_0009962.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009962 * *Label* = excretory gland - * *Definition* = A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] * *Comment* = todo - child terms ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010062.md b/md/UBERON/62/UBERON_0010062.md index 18b5e973e6..1e0ccefa7b 100644 --- a/md/UBERON/62/UBERON_0010062.md +++ b/md/UBERON/62/UBERON_0010062.md @@ -6,8 +6,8 @@ ## Synonyms - * auditory tube epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004117] - * eustachian tube epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * auditory tube epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004117 ] + * eustachian tube epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010162.md b/md/UBERON/62/UBERON_0010162.md index c954e36085..35bff61a03 100644 --- a/md/UBERON/62/UBERON_0010162.md +++ b/md/UBERON/62/UBERON_0010162.md @@ -6,7 +6,7 @@ ## Synonyms - * end of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002848] + * end of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002848 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010262.md b/md/UBERON/62/UBERON_0010262.md index 2f3953e9a8..4329a3d492 100644 --- a/md/UBERON/62/UBERON_0010262.md +++ b/md/UBERON/62/UBERON_0010262.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010262 * *Label* = operculum of brain - * *Definition* = The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Operculum_%28brain%29] + * *Definition* = The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Operculum_%28brain%29 ] ## Synonyms - * operculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0100954] + * operculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0100954 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010362.md b/md/UBERON/62/UBERON_0010362.md index d85f6dacb1..1c83ca8700 100644 --- a/md/UBERON/62/UBERON_0010362.md +++ b/md/UBERON/62/UBERON_0010362.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010362 * *Label* = endoskeleton - * *Definition* = Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000037[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000037, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * replacement skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * replacement skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An endoskeleton is an internal support structure of an animal, composed of mineralized tissue. Endoskeleton develops within the skin or in the deeper body tissues. The vertebrate is basically an endoskeleton made up of two types of tissues (bone and cartilage). During early embryonic development the endoskeleton is composed of notochord and cartilage. The notochord in most vertebrates is replaced by vertebral column and cartilage is replaced by bone in most adults. In three phyla and one subclass of animals, endoskeletons of various complexity are found: Chordata, Echinodermata, Porifera, and Coleoidea. An endoskeleton may function purely for support (as in the case of sponges), but often serves as an attachment site for muscle and a mechanism for transmitting muscular forces. A true endoskeleton is derived from mesodermal tissue. Such a skeleton is present in echinoderms and chordates. The poriferan 'skeleton' consists of microscopic calcareous or siliceous spicules or a spongin network. The Coleoidae do not have a true endoskeleton in the evolutionary sense; here, a mollusk exoskeleton evolved into several sorts of internal structure, the 'cuttlebone' of cuttlefish being the best-known version. Yet they do have cartilaginous tissue in their body, even if it is not mineralized, especially in the head, where it forms a primitive cranium. The endoskeleton gives shape,support and protection to the body and provides a mean of locomotion.[Wikipedia:Endoskeleton]t - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010562.md b/md/UBERON/62/UBERON_0010562.md index 33bb00cb16..763f5081d3 100644 --- a/md/UBERON/62/UBERON_0010562.md +++ b/md/UBERON/62/UBERON_0010562.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010562 * *Label* = pedal digit 1 mesenchyme - * *Definition* = Mesenchyme that is part of a pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 1 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 1 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 1 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010862.md b/md/UBERON/62/UBERON_0010862.md index ae53a5ca08..811089b281 100644 --- a/md/UBERON/62/UBERON_0010862.md +++ b/md/UBERON/62/UBERON_0010862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010862 * *Label* = dactylopatagium - * *Definition* = An interdigital region that is part of a patagium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region that is part of a patagium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region](../../UBERON/12/UBERON_0006012.md) and [part_of](../../BFO/50/BFO_0000050.md) some [patagium](../../UBERON/56/UBERON_0010856.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0010962.md b/md/UBERON/62/UBERON_0010962.md index aa20bc3e3c..24c57a7cd0 100644 --- a/md/UBERON/62/UBERON_0010962.md +++ b/md/UBERON/62/UBERON_0010962.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0011162.md b/md/UBERON/62/UBERON_0011162.md index e2803ef8cf..e2c0ffcb61 100644 --- a/md/UBERON/62/UBERON_0011162.md +++ b/md/UBERON/62/UBERON_0011162.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011162 * *Label* = supraoccipital cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * supra-occipital cartilage condensation - * supraoccipital cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18341] - * non-squamous part of supraoccipital bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18341] + * supraoccipital cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18341 ] + * non-squamous part of supraoccipital bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18341 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [supraoccipital endochondral element](../../UBERON/15/UBERON_0015015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0011362.md b/md/UBERON/62/UBERON_0011362.md index 5d437da256..930a62336f 100644 --- a/md/UBERON/62/UBERON_0011362.md +++ b/md/UBERON/62/UBERON_0011362.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011362 * *Label* = cranial blood vasculature - * *Definition* = A blood vasculature that is part of a head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vasculature that is part of a head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * set of blood vessels of head - * cranial blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005297[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cranial blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005297, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vasculature](../../UBERON/37/UBERON_0004537.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Blood vessel part of cranial vasculature.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011362 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0011662.md b/md/UBERON/62/UBERON_0011662.md index 5d0a465120..b19a3e4034 100644 --- a/md/UBERON/62/UBERON_0011662.md +++ b/md/UBERON/62/UBERON_0011662.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011662 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0011862.md b/md/UBERON/62/UBERON_0011862.md index b3c1ff8812..9fff96bf6f 100644 --- a/md/UBERON/62/UBERON_0011862.md +++ b/md/UBERON/62/UBERON_0011862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011862 * *Label* = pulmonary collagen fibril - * *Definition* = the connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011641] + * *Definition* = the connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011641 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collagen fibril](../../UBERON/60/UBERON_0011860.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0011962.md b/md/UBERON/62/UBERON_0011962.md index e4d78e5a4a..c6db9384a2 100644 --- a/md/UBERON/62/UBERON_0011962.md +++ b/md/UBERON/62/UBERON_0011962.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011962 * *Label* = transverse tarsal joint - * *Definition* = The transverse tarsal joint is formed by the articulation of the calcaneus with the cuboid, and the articulation of the talus with the navicular. The movement which takes place in this joint is more extensive than that in the other tarsal joints, and consists of a sort of rotation by means of which the foot may be slightly flexed or extended, the sole being at the same time carried medially (inverted) or laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_tarsal_joint] + * *Definition* = The transverse tarsal joint is formed by the articulation of the calcaneus with the cuboid, and the articulation of the talus with the navicular. The movement which takes place in this joint is more extensive than that in the other tarsal joints, and consists of a sort of rotation by means of which the foot may be slightly flexed or extended, the sole being at the same time carried medially (inverted) or laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_tarsal_joint ] ## Synonyms - * articulatio tarsi transversa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_tarsal_joint] - * chopart's joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35201] - * midtarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_tarsal_joint] + * articulatio tarsi transversa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_tarsal_joint ] + * chopart's joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35201 ] + * midtarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_tarsal_joint ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011962 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0012262.md b/md/UBERON/62/UBERON_0012262.md index f857979402..6e64f26c7a 100644 --- a/md/UBERON/62/UBERON_0012262.md +++ b/md/UBERON/62/UBERON_0012262.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012262 * *Label* = manual minor digit (Aves) - * *Definition* = A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10220427[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PhenoscapeRCN:Oct2012] + * *Definition* = A manual digit found in Aves that is morphologically similar to digit 3 in the standard tetrapod configuration and develops from embryonic digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10220427, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PhenoscapeRCN:Oct2012 ] * *Comment* = Hypothesized to be homologous to manual digit 3 of other tetrapods ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0012462.md b/md/UBERON/62/UBERON_0012462.md index 6dd05c9b0c..3dc2fb0746 100644 --- a/md/UBERON/62/UBERON_0012462.md +++ b/md/UBERON/62/UBERON_0012462.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012462 * *Label* = proctodeum portion of cloaca - * *Definition* = Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Most distal cloacal compartment; function is copulation and in some species develops a penis[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Taxon notes: For most birds this is where the phallus is located, but male parrots do not have a phallus. The Bursa of Fabricus is located here.[http://caiquesite.com/glossary.htm] ## Synonyms * proctodeal wall of cloaca - * proctodeum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * proctodeum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = proctodeal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0013162.md b/md/UBERON/62/UBERON_0013162.md index abedf31e59..7815df021d 100644 --- a/md/UBERON/62/UBERON_0013162.md +++ b/md/UBERON/62/UBERON_0013162.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013162 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0013262.md b/md/UBERON/62/UBERON_0013262.md index 8495ffb744..d95aedc353 100644 --- a/md/UBERON/62/UBERON_0013262.md +++ b/md/UBERON/62/UBERON_0013262.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013262 * *Label* = remnnant of ductus deferens - * *Definition* = remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=98549] + * *Definition* = remnant in a female of the portion of the embryonic mesonephric duct that develops into the ductus deferens in males. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=98549 ] ## Synonyms - * ductus deferens vestige [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76609] - * ductus deferens vestigialis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestige of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76609] + * ductus deferens vestige [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76609 ] + * ductus deferens vestigialis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestige of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76609 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013262 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0013462.md b/md/UBERON/62/UBERON_0013462.md index 8ed6de9a12..ba00811a9f 100644 --- a/md/UBERON/62/UBERON_0013462.md +++ b/md/UBERON/62/UBERON_0013462.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013462 * *Label* = sylvian point - * *Definition* = The Sylvian point is the point on the human skull nearest the Sylvian fissure and is located about 30 millimeters behind the Zygomatic process of frontal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sylvian_point] + * *Definition* = The Sylvian point is the point on the human skull nearest the Sylvian fissure and is located about 30 millimeters behind the Zygomatic process of frontal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sylvian_point ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0013562.md b/md/UBERON/62/UBERON_0013562.md index ade9ec402b..c66bacf9d6 100644 --- a/md/UBERON/62/UBERON_0013562.md +++ b/md/UBERON/62/UBERON_0013562.md @@ -6,18 +6,18 @@ ## Synonyms - * B09-8a [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1762] - * Brodmann (1909) area 8a [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1762] + * B09-8a [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1762 ] + * Brodmann (1909) area 8a [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1762 ] * Brodmann area 8a - * area 8a of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1762] - * B09-8a [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1762[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 8 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1034] - * brodmann's area 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1034] + * area 8a of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1762 ] + * B09-8a [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1762, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 8 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1034 ] + * brodmann's area 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1034 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1762 - * NeuroNames:1034 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1762] + * NeuroNames:1034 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1762 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013562 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0014462.md b/md/UBERON/62/UBERON_0014462.md index ae891787fd..aa77635ca8 100644 --- a/md/UBERON/62/UBERON_0014462.md +++ b/md/UBERON/62/UBERON_0014462.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014462 * *Label* = ptychocyst - * *Definition* = A cnida that is glutinous and is capable of sticking to prey. Found on burrowing (tube) anemones, which help create the tube in which the animal lives. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae] + * *Definition* = A cnida that is glutinous and is capable of sticking to prey. Found on burrowing (tube) anemones, which help create the tube in which the animal lives. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae ] ## Synonyms - * glutinant cnida [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * glutinant cnida [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014462 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0014762.md b/md/UBERON/62/UBERON_0014762.md index a65f344586..70ebafb614 100644 --- a/md/UBERON/62/UBERON_0014762.md +++ b/md/UBERON/62/UBERON_0014762.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014762 * *Label* = fused metapodial bones 2-4 - * *Definition* = An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An element formed from the fusion of metapodium bones 2, 3 and 4 (i.e. either metatarsals 2-4 or metacarpals 3-4). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * fused central metapodials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * fused metapodials 2-4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * metapodial 2+3+4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * fused central metapodials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * fused metapodials 2-4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * metapodial 2+3+4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [metapodium bone 2](../../UBERON/82/UBERON_0013582.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metapodium bone 3](../../UBERON/83/UBERON_0013583.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metapodium bone 4](../../UBERON/84/UBERON_0013584.md) and [metapodium bone](../../UBERON/21/UBERON_0003821.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_51337 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014762 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0014862.md b/md/UBERON/62/UBERON_0014862.md index 02c9995ea9..0f649c1f60 100644 --- a/md/UBERON/62/UBERON_0014862.md +++ b/md/UBERON/62/UBERON_0014862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014862 * *Label* = trochophore stage - * *Definition* = A larval stage of a trochozoan in which the organism is in free-swimming planktonic form with several bands of cilia[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochophore] + * *Definition* = A larval stage of a trochozoan in which the organism is in free-swimming planktonic form with several bands of cilia[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochophore ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014862 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_0015062.md b/md/UBERON/62/UBERON_0015062.md index ae824313ab..dc97cc43d0 100644 --- a/md/UBERON/62/UBERON_0015062.md +++ b/md/UBERON/62/UBERON_0015062.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015062 * *Label* = bone condensation - * *Definition* = A delimited region of osteoblasts representing the early stages of bone formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000213[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A delimited region of osteoblasts representing the early stages of bone formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000213, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2000362.md b/md/UBERON/62/UBERON_2000362.md index 421dff2b94..a6811ae696 100644 --- a/md/UBERON/62/UBERON_2000362.md +++ b/md/UBERON/62/UBERON_2000362.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2000462.md b/md/UBERON/62/UBERON_2000462.md index 0b0a6b7ba1..62980dd6bc 100644 --- a/md/UBERON/62/UBERON_2000462.md +++ b/md/UBERON/62/UBERON_2000462.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2000662.md b/md/UBERON/62/UBERON_2000662.md index 5fdc1437a3..1951a5f378 100644 --- a/md/UBERON/62/UBERON_2000662.md +++ b/md/UBERON/62/UBERON_2000662.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2000862.md b/md/UBERON/62/UBERON_2000862.md index 0e0cae58dd..95f176f96c 100644 --- a/md/UBERON/62/UBERON_2000862.md +++ b/md/UBERON/62/UBERON_2000862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000862 * *Label* = obsolete caudal fin skeleton - * *Definition* = Median fin skeleton supporting the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Median fin skeleton supporting the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000167 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/62/UBERON_2000962.md b/md/UBERON/62/UBERON_2000962.md index 1225234d46..40a3374c0a 100644 --- a/md/UBERON/62/UBERON_2000962.md +++ b/md/UBERON/62/UBERON_2000962.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000962 * *Label* = sclerotome somite 7 - * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001062.md b/md/UBERON/62/UBERON_2001062.md index e6275cee5d..3549feeb60 100644 --- a/md/UBERON/62/UBERON_2001062.md +++ b/md/UBERON/62/UBERON_2001062.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001062 * *Label* = primitive mesencephalic artery - * *Definition* = precursor to mesencephalic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = precursor to mesencephalic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * PMsA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001062] + * PMsA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001062 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundar[ZFIN:curator]y - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001062 + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001162.md b/md/UBERON/62/UBERON_2001162.md index e7e17191bc..d0531dead6 100644 --- a/md/UBERON/62/UBERON_2001162.md +++ b/md/UBERON/62/UBERON_2001162.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001162 * *Label* = obsolete anal fin - * *Definition* = Median fin that is located posterior to the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Median fin that is located posterior to the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * nageoire anale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * proctopt?re [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000136] - * proctopt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PAPUB:0000142[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] + * nageoire anale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * proctopt?re [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000136 ] + * proctopt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PAPUB:0000142, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] ## Cross-references @@ -31,8 +31,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000163 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/62/UBERON_2001462.md b/md/UBERON/62/UBERON_2001462.md index 5570335c3b..c27b0651fa 100644 --- a/md/UBERON/62/UBERON_2001462.md +++ b/md/UBERON/62/UBERON_2001462.md @@ -6,7 +6,7 @@ ## Synonyms - * somite border cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001462[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * somite border cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001462, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001562.md b/md/UBERON/62/UBERON_2001562.md index dc75f6199a..85bb4c401e 100644 --- a/md/UBERON/62/UBERON_2001562.md +++ b/md/UBERON/62/UBERON_2001562.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001662.md b/md/UBERON/62/UBERON_2001662.md index 29c2d1823a..77500a3913 100644 --- a/md/UBERON/62/UBERON_2001662.md +++ b/md/UBERON/62/UBERON_2001662.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001662 * *Label* = basibranchial 4 tooth plate - * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basibranchial 4 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001662] + * basibranchial 4 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001662 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001762.md b/md/UBERON/62/UBERON_2001762.md index d8c4d26ce5..97f507c232 100644 --- a/md/UBERON/62/UBERON_2001762.md +++ b/md/UBERON/62/UBERON_2001762.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001762 * *Label* = pectoral fin lepidotrichium 2 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001762] + * pectoral fin ray 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001762 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001862.md b/md/UBERON/62/UBERON_2001862.md index e4b2b23945..5427d095ea 100644 --- a/md/UBERON/62/UBERON_2001862.md +++ b/md/UBERON/62/UBERON_2001862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001862 * *Label* = epibranchial 3-pharyngobranchial 4 joint - * *Definition* = Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2001962.md b/md/UBERON/62/UBERON_2001962.md index 011dee059a..87e12a884d 100644 --- a/md/UBERON/62/UBERON_2001962.md +++ b/md/UBERON/62/UBERON_2001962.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001962 * *Label* = hypobranchial 1 bone distal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * hypobranchial 1 bone lateral cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001962] - * hypobranchial 1 bone posterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001962] + * hypobranchial 1 bone lateral cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001962 ] + * hypobranchial 1 bone posterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001962 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2002062.md b/md/UBERON/62/UBERON_2002062.md index 3dda524a1d..1f3159d6af 100644 --- a/md/UBERON/62/UBERON_2002062.md +++ b/md/UBERON/62/UBERON_2002062.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002062 * *Label* = branched caudal fin ray - * *Definition* = Caudal fin lepidotrichium that is distally branched. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal fin lepidotrichium that is distally branched. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2002162.md b/md/UBERON/62/UBERON_2002162.md index 5dc46f47aa..41c7694c82 100644 --- a/md/UBERON/62/UBERON_2002162.md +++ b/md/UBERON/62/UBERON_2002162.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002162 * *Label* = ural vertebra - * *Definition* = Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/tracker/294 +## Usage + + ## External Comments diff --git a/md/UBERON/62/UBERON_2002262.md b/md/UBERON/62/UBERON_2002262.md index d7d1164b75..370a5e3fed 100644 --- a/md/UBERON/62/UBERON_2002262.md +++ b/md/UBERON/62/UBERON_2002262.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_2007062.md b/md/UBERON/62/UBERON_2007062.md index 549b3a2e8b..fa65633221 100644 --- a/md/UBERON/62/UBERON_2007062.md +++ b/md/UBERON/62/UBERON_2007062.md @@ -6,7 +6,7 @@ ## Synonyms - * olfactory fields [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007062[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * olfactory fields [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007062, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3000162.md b/md/UBERON/62/UBERON_3000162.md index 5023f638d0..4aa6c3b6e2 100644 --- a/md/UBERON/62/UBERON_3000162.md +++ b/md/UBERON/62/UBERON_3000162.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000162 * *Label* = fenestra endonarina communis - * *Definition* = Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the anterolateral aspect of the nasal capsule. It contains the apertura nasalis externa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * apertura nasalis externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000162] - * fenestra narina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000162] - * narial fenestra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000162] + * apertura nasalis externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000162 ] + * fenestra narina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000162 ] + * narial fenestra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000162 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3000362.md b/md/UBERON/62/UBERON_3000362.md index 5daf756765..c035fe1606 100644 --- a/md/UBERON/62/UBERON_3000362.md +++ b/md/UBERON/62/UBERON_3000362.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/62/UBERON_3000562.md b/md/UBERON/62/UBERON_3000562.md index 4b4765c956..f67b8c37df 100644 --- a/md/UBERON/62/UBERON_3000562.md +++ b/md/UBERON/62/UBERON_3000562.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3000662.md b/md/UBERON/62/UBERON_3000662.md index c2d9ccced2..9206bcf611 100644 --- a/md/UBERON/62/UBERON_3000662.md +++ b/md/UBERON/62/UBERON_3000662.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000662 * *Label* = processus posterior of parasphenoid - * *Definition* = Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3000762.md b/md/UBERON/62/UBERON_3000762.md index d0d2e5d163..e4ad4b9ace 100644 --- a/md/UBERON/62/UBERON_3000762.md +++ b/md/UBERON/62/UBERON_3000762.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000762 * *Label* = epicoracoid - * *Definition* = Paired, flat cartilaginous arches that compose the central portion of the zonal area, unites the clavicle and coracoid of each half of the pectoral girdle, and form the medial margins of the pectoral fenestrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, flat cartilaginous arches that compose the central portion of the zonal area, unites the clavicle and coracoid of each half of the pectoral girdle, and form the medial margins of the pectoral fenestrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * coracoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000762] - * corpus sterni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000762] - * entosternal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000762] - * infracoracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000762] - * sterni ossa media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000762] + * coracoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000762 ] + * corpus sterni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000762 ] + * entosternal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000762 ] + * infracoracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000762 ] + * sterni ossa media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000762 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3000862.md b/md/UBERON/62/UBERON_3000862.md index 525e2931b8..c64e138202 100644 --- a/md/UBERON/62/UBERON_3000862.md +++ b/md/UBERON/62/UBERON_3000862.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000862 * *Label* = pubo-ischium - * *Definition* = Composite element formed by the fusion of the ischium and pubis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Composite element formed by the fusion of the ischium and pubis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3010262.md b/md/UBERON/62/UBERON_3010262.md index 549efe60e0..379a2f1e42 100644 --- a/md/UBERON/62/UBERON_3010262.md +++ b/md/UBERON/62/UBERON_3010262.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_3010562.md b/md/UBERON/62/UBERON_3010562.md index 2f834a8ff6..e07ec3c1fa 100644 --- a/md/UBERON/62/UBERON_3010562.md +++ b/md/UBERON/62/UBERON_3010562.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_4000162.md b/md/UBERON/62/UBERON_4000162.md index d883c1e53b..29390c1a8a 100644 --- a/md/UBERON/62/UBERON_4000162.md +++ b/md/UBERON/62/UBERON_4000162.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000162 * *Label* = median fin - * *Definition* = Fin that is an unpaired fin located in the sagittal plane of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Fin that is an unpaired fin located in the sagittal plane of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * nageoire impaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * p?rissopt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] + * nageoire impaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * p?rissopt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [core#in_median_plane_of](../../core#in/of/core#in_median_plane_of.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [fin](../../UBERON/97/UBERON_0008897.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_4200062.md b/md/UBERON/62/UBERON_4200062.md index 9b0b8b6e3d..6edad72269 100644 --- a/md/UBERON/62/UBERON_4200062.md +++ b/md/UBERON/62/UBERON_4200062.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/62/UBERON_4200162.md b/md/UBERON/62/UBERON_4200162.md index 4e966a203e..45f84b2f81 100644 --- a/md/UBERON/62/UBERON_4200162.md +++ b/md/UBERON/62/UBERON_4200162.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0000063.md b/md/UBERON/63/UBERON_0000063.md index 5c6617ddab..b985b101b1 100644 --- a/md/UBERON/63/UBERON_0000063.md +++ b/md/UBERON/63/UBERON_0000063.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000063 * *Label* = organ segment - * *Definition* = Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86140] + * *Definition* = Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86140 ] ## Synonyms - * organ region with fixed fiat boundary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86140] - * segment of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86140] + * organ region with fixed fiat boundary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86140 ] + * segment of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86140 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0000163.md b/md/UBERON/63/UBERON_0000163.md index 598d48d99f..adffd2cca7 100644 --- a/md/UBERON/63/UBERON_0000163.md +++ b/md/UBERON/63/UBERON_0000163.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000163 * *Label* = embryonic cloaca - * *Definition* = endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010115[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cloaca_(embryology)] + * *Definition* = endoderm-lined chamber that develops as pouch-like dilation of the caudal end of the hindgut and receives the allantois ventrally and two mesonephric ducts laterally; caudally it ends blindly at the cloacal membrane formed by the union of proctodeal (anal pit) ectoderm and cloacal endoderm, with no intervening mesoderm[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010115, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cloaca_(embryology) ] * *Comment* = compare UBERON:0000162 cloaca ## Synonyms - * cloaca [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * cloaca [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0000363.md b/md/UBERON/63/UBERON_0000363.md index 47d0a0b2b0..e689ac348f 100644 --- a/md/UBERON/63/UBERON_0000363.md +++ b/md/UBERON/63/UBERON_0000363.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000363 * *Label* = reticuloendothelial system - * *Definition* = A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticuloendothelial_system] + * *Definition* = A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticuloendothelial_system ] ## Synonyms - * RES [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticuloendothelial_system] - * lymphoreticular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticuloendothelial_system] - * mononuclear phagocyte system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84189] - * lymphoreticular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BioMart:BioMart] + * RES [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticuloendothelial_system ] + * lymphoreticular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticuloendothelial_system ] + * mononuclear phagocyte system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84189 ] + * lymphoreticular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BioMart:BioMart ] ## Cross-references @@ -20,7 +20,7 @@ * GAID:1004 * MESH:A15.382.812 * SCTID:278874002 - * UMLS:C0035287 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Reticuloendothelial_System] + * UMLS:C0035287 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Reticuloendothelial_System ] * Wikipedia:Reticuloendothelial_system * ncithesaurus:Reticuloendothelial_System @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0000463.md b/md/UBERON/63/UBERON_0000463.md index f3ebac3b8a..215f9bffac 100644 --- a/md/UBERON/63/UBERON_0000463.md +++ b/md/UBERON/63/UBERON_0000463.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000463 * *Label* = portion of organism substance - * *Definition* = Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms - * body fluid or substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002450] - * body substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9669] + * body fluid or substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002450 ] + * body substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9669 ] * organism substance - * portion of body substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9669] + * portion of body substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9669 ] ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0000963.md b/md/UBERON/63/UBERON_0000963.md index 516dd72410..44ad9ae755 100644 --- a/md/UBERON/63/UBERON_0000963.md +++ b/md/UBERON/63/UBERON_0000963.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001063.md b/md/UBERON/63/UBERON_0001063.md index a2c0d66786..d12b547ef2 100644 --- a/md/UBERON/63/UBERON_0001063.md +++ b/md/UBERON/63/UBERON_0001063.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001063 * *Label* = flocculus - * *Definition* = a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flocculus_(cerebellar)] + * *Definition* = a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flocculus_(cerebellar) ] * *Comment* = AO Notes: flocculus is an exact label for two distinct classes in NIF. Function notes: At its base, the flocculus receives input from the middle ears vestibular system and regulates balance. Many floccular projections descend to the spinal cord and connect to the motor nuclei involved in control of eye movement.[WP]. Taxon notes: enlarged in pterosaurs[PMID:14586467] ## Synonyms - * flocculus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83881] - * neuraxis flocculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83881] - * H X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83881] - * hemispheric lobule X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081213[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * lobule X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83881] + * flocculus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83881 ] + * neuraxis flocculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83881 ] + * H X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83881 ] + * hemispheric lobule X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081213, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * lobule X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83881 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:Flocculus-MA_0000992 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001163.md b/md/UBERON/63/UBERON_0001163.md index 585d79af83..fe3d6a4034 100644 --- a/md/UBERON/63/UBERON_0001163.md +++ b/md/UBERON/63/UBERON_0001163.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001163 * *Label* = lesser curvature of stomach - * *Definition* = The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_curvature_of_stomach] + * *Definition* = The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_curvature_of_stomach ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:14572 * MA:0001616 * SCTID:362133008 - * UMLS:C0227221 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lesser_Curvature] + * UMLS:C0227221 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lesser_Curvature ] * Wikipedia:Lesser_curvature_of_stomach * galen:LesserCurvatureOfStomach * http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001263.md b/md/UBERON/63/UBERON_0001263.md index cd88aaf834..73564ec973 100644 --- a/md/UBERON/63/UBERON_0001263.md +++ b/md/UBERON/63/UBERON_0001263.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001263 * *Label* = pancreatic acinus - * *Definition* = the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009145] + * *Definition* = the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009145 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * acinus pancreaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16011[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * acinus pancreaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16011, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pancreas acinus - * pancreatic acinar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TEMP:MP] - * pancreatic acini [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * pancreatic acinar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TEMP:MP ] + * pancreatic acini [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:16011 * MA:0002417 * SCTID:247604006 - * UMLS:C0227578 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Acinus] + * UMLS:C0227578 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Acinus ] * ncithesaurus:Pancreatic_Acinus ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acinus](../../UBERON/42/UBERON_0009842.md) and [part_of](../../BFO/50/BFO_0000050.md) some [exocrine pancreas](../../UBERON/17/UBERON_0000017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001363.md b/md/UBERON/63/UBERON_0001363.md index 1383adaca3..1754de5c1f 100644 --- a/md/UBERON/63/UBERON_0001363.md +++ b/md/UBERON/63/UBERON_0001363.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001363 * *Label* = great saphenous vein - * *Definition* = The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_saphenous_vein] + * *Definition* = The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_saphenous_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * greater saphenous vein - * large saphenous vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003271] + * large saphenous vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003271 ] * long saphenous vein - * vena saphena magna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_saphenous_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena saphena magna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_saphenous_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:21376 * MA:0002216 * SCTID:181402008 - * UMLS:C0392907 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Long_Saphenous_Vein] + * UMLS:C0392907 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Long_Saphenous_Vein ] * Wikipedia:Great_saphenous_vein * galen:GreatSaphenousVein * galen:GreaterSaphenousVein @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001463.md b/md/UBERON/63/UBERON_0001463.md index bad76e0e71..50e13167e1 100644 --- a/md/UBERON/63/UBERON_0001463.md +++ b/md/UBERON/63/UBERON_0001463.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001463 * *Label* = manual digit 1 - * *Definition* = 1st (preaxial) digit of the manus[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thumb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264] + * *Definition* = 1st (preaxial) digit of the manus[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thumb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264 ] * *Comment* = Not present in Anurans (Phenotype RCN Oct 2012) ## Synonyms - * digit 1 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17429] + * digit 1 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17429 ] * digit 1 of manus - * finger 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000511] + * finger 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000511 ] * first digit of hand - * fore digit I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010639] - * fore limb digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000454] + * fore digit I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010639 ] + * fore limb digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000454 ] * manual digit 1 - * pollex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thumb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pollex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thumb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * digitus 1 - * digitus I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thumb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * digitus I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thumb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digitus primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thumb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * digitus primus [I] - * digitus primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thumb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * alula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * forelimb dewclaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dewclaw[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hand digit 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * thumb [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * first finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17429] + * alula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * forelimb dewclaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dewclaw, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hand digit 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * thumb [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * first finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17429 ] ## Cross-references @@ -39,7 +39,7 @@ * OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA * SCTID:302540006 * SCTID:69603001 - * UMLS:C0040067 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Digit_1] + * UMLS:C0040067 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Digit_1 ] * Wikipedia:Thumb * http://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg @@ -59,7 +59,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit 1](../../UBERON/48/UBERON_0006048.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -68,8 +68,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit). * *[ambiguous_for_taxon](../../core#ambiguous/on/core#ambiguous_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001563.md b/md/UBERON/63/UBERON_0001563.md index e822b69d02..c1d2e60267 100644 --- a/md/UBERON/63/UBERON_0001563.md +++ b/md/UBERON/63/UBERON_0001563.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001563 * *Label* = longus capitis muscle - * *Definition* = The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_capitis_muscle] + * *Definition* = The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_capitis_muscle ] ## Synonyms - * longus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002340] - * m. rectus capitis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010666] - * longus capitus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_capitis_muscle] - * musculus longus capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_capitis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rectus capitis anticus major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longus_capitis_muscle] + * longus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002340 ] + * m. rectus capitis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010666 ] + * longus capitus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_capitis_muscle ] + * musculus longus capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_capitis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rectus capitis anticus major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longus_capitis_muscle ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:46308 * MA:0002340 * SCTID:244837000 - * UMLS:C0224107 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Longus_Capitis] + * UMLS:C0224107 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Longus_Capitis ] * Wikipedia:Longus_capitis_muscle * http://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001663.md b/md/UBERON/63/UBERON_0001663.md index 251149f32c..4fabe36247 100644 --- a/md/UBERON/63/UBERON_0001663.md +++ b/md/UBERON/63/UBERON_0001663.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001663 * *Label* = cerebral vein - * *Definition* = The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_veins] + * *Definition* = The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae encephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae encephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0002096 * MESH:A07.231.908.155 * SCTID:244392000 - * UMLS:C0007797 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Vein] + * UMLS:C0007797 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Vein ] * Wikipedia:Cerebral_veins * XAO:0004160 * http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001763.md b/md/UBERON/63/UBERON_0001763.md index c9c1a54241..9c1d8e43da 100644 --- a/md/UBERON/63/UBERON_0001763.md +++ b/md/UBERON/63/UBERON_0001763.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001763 * *Label* = odontogenic papilla - * *Definition* = Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_papilla[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005140] + * *Definition* = Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_papilla, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005140 ] ## Synonyms - * odontogenic condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000025] - * pharyngeal tooth mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005140[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * dental papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001598] - * dentinal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001839] - * dermal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * papilla dentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tooth mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005140] + * odontogenic condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000025 ] + * pharyngeal tooth mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005140, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * dental papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001598 ] + * dentinal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001839 ] + * dermal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * papilla dentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tooth mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005140 ] ## Cross-references @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Teeth and tooth-like structures, together named odontodes, are repeated organs thought to share a common evolutionary origin. These structures can be found in gnathostomes at different locations along the body: oral teeth in the jaws, teeth and denticles in the oral-pharyngeal cavity, and dermal denticles on elasmobranch skin.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001863.md b/md/UBERON/63/UBERON_0001863.md index 207c1c1c4f..c51c167e4a 100644 --- a/md/UBERON/63/UBERON_0001863.md +++ b/md/UBERON/63/UBERON_0001863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001863 * *Label* = scala vestibuli - * *Definition* = Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scala_vestibuli] + * *Definition* = Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scala_vestibuli ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0001963.md b/md/UBERON/63/UBERON_0001963.md index 190839df55..9b20686679 100644 --- a/md/UBERON/63/UBERON_0001963.md +++ b/md/UBERON/63/UBERON_0001963.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001963 * *Label* = bronchial-associated lymphoid tissue - * *Definition* = A diffuse collection of lymphpoid cells that participate in airway immune responses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611] + * *Definition* = A diffuse collection of lymphpoid cells that participate in airway immune responses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611 ] * *Comment* = Lymphoid tissue associated with airways in mice has functional similarities to human BALT[ISBN10:0123813611] Notes: FMA classifies this as organized, not diffuse ## Synonyms @@ -15,7 +15,7 @@ * FMA:62821 * MA:0000135 - * UMLS:C1179418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus-Associated_Lymphoid_Tissue] + * UMLS:C1179418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus-Associated_Lymphoid_Tissue ] * ncithesaurus:Bronchus-Associated_Lymphoid_Tissue ## Subsets @@ -26,19 +26,20 @@ * [mucosa-associated lymphoid tissue](../../UBERON/61/UBERON_0001961.md) * [endoderm-derived structure](../../UBERON/19/UBERON_0004119.md) * [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [submucosa of bronchus](../../UBERON/57/UBERON_0001957.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa-associated lymphoid tissue](../../UBERON/61/UBERON_0001961.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002063.md b/md/UBERON/63/UBERON_0002063.md index 3b54b5d0fb..67fcfabefa 100644 --- a/md/UBERON/63/UBERON_0002063.md +++ b/md/UBERON/63/UBERON_0002063.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002063 * *Label* = sinus venosus - * *Definition* = The sinus venosus is a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus] + * *Definition* = The sinus venosus is a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus ] * *Comment* = In zebrafish, "the sinus venosus also acts as a pacemaker and is the first to contract"[ZFA:0000154] ## Synonyms - * inflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000154] - * sinus venarum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus] - * sinus venosus cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venarum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus] - * venarum sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus] - * venosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sinus_venosus] + * inflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000154 ] + * sinus venarum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus ] + * sinus venosus cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venarum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus ] + * venarum sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus ] + * venosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sinus_venosus ] ## Cross-references @@ -23,8 +23,8 @@ * EMAPA:16237 * FMA:70303 * TAO:0000154 - * UMLS:C0225857 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sinus_Venarum] - * UMLS:C0231084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sinus_Venosus] + * UMLS:C0225857 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sinus_Venarum ] + * UMLS:C0231084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sinus_Venosus ] * VHOG:0000177 * Wikipedia:Sinus_venosus * ZFA:0000154 @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the circulatory system which receives blood from the systemic veins and contracts to pump the blood into the atrium of the heart.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002163.md b/md/UBERON/63/UBERON_0002163.md index 6e9345234a..daa38cb12f 100644 --- a/md/UBERON/63/UBERON_0002163.md +++ b/md/UBERON/63/UBERON_0002163.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002163 * *Label* = inferior cerebellar peduncle - * *Definition* = The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cerebellar_peduncle] + * *Definition* = The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cerebellar_peduncle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * corpus restiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72615[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * restiform body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1691] - * crus cerebelli ad medullam oblongatam [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:781[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crus medullo-cerebellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:781[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior cerebellar peduncle (Ridley) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:781] - * inferior cerebellar peduncle (restiform body) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:icp] - * inferior peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cerebellar_peduncle] - * pedunculus cerebellaris caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:781[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pedunculus cerebellaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cerebellar_peduncle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus restiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72615, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * restiform body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1691 ] + * crus cerebelli ad medullam oblongatam [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:781, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crus medullo-cerebellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:781, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior cerebellar peduncle (Ridley) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:781 ] + * inferior cerebellar peduncle (restiform body) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:icp ] + * inferior peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cerebellar_peduncle ] + * pedunculus cerebellaris caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:781, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pedunculus cerebellaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cerebellar_peduncle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,9 +26,9 @@ * MA:0002744 * NIF_GrossAnatomy:birnlex_1691 * NIF_GrossAnatomy_RETIRED:birnlex_1645 - * NeuroNames:781 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1691] + * NeuroNames:781 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1691 ] * SCTID:362418008 - * UMLS:C0152393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1691] + * UMLS:C0152393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1691 ] * Wikipedia:Inferior_cerebellar_peduncle * http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray677.png/200px-Gray677.png @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002263.md b/md/UBERON/63/UBERON_0002263.md index 274a1b1480..1b8935dace 100644 --- a/md/UBERON/63/UBERON_0002263.md +++ b/md/UBERON/63/UBERON_0002263.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002263 * *Label* = lentiform nucleus - * *Definition* = The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. The part of the corpus striatum somewhat resembling a biconvex lens, divided into an external, larger, lateral part (putamen) and an internal, smaller, lighter colored medial part (globus pallidus), which is in turn subdivided into a smaller, medial, and a larger, lateral part by the medial medullary lamina[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002250[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lentiform_nucleus] + * *Definition* = The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. The part of the corpus striatum somewhat resembling a biconvex lens, divided into an external, larger, lateral part (putamen) and an internal, smaller, lighter colored medial part (globus pallidus), which is in turn subdivided into a smaller, medial, and a larger, lateral part by the medial medullary lamina[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002250, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lentiform_nucleus ] * *Comment* = AO notes: the EMAPA class is unclear. Editor notes: TODO - add parts ## Synonyms - * nucleus lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002250] - * nucleus lentiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002250] - * lenticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002250] - * nucleus lentiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lentiform_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002250 ] + * nucleus lentiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002250 ] + * lenticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002250 ] + * nucleus lentiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lentiform_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * NeuroNames:1234 * OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA * SCTID:279319002 - * UMLS:C0162342 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lenticular_Nucleus] + * UMLS:C0162342 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lenticular_Nucleus ] * Wikipedia:Lentiform_nucleus * http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray741.png/200px-Gray741.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002363.md b/md/UBERON/63/UBERON_0002363.md index 1fa1ed2ebf..04380c981c 100644 --- a/md/UBERON/63/UBERON_0002363.md +++ b/md/UBERON/63/UBERON_0002363.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002363 * *Label* = dura mater - * *Definition* = Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090206] + * *Definition* = Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090206 ] * *Comment* = Function notes: capable of inducing chondrogenesis - requires contact with an epithelium - PMID:16496288. AO notes: in ncit this is divided into periosteal layer and meningeal layer ## Synonyms * dura mater of neuraxis - * pachymeninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090206] - * dura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001637] + * pachymeninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090206 ] + * dura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001637 ] ## Cross-references @@ -26,7 +26,7 @@ * NeuroNames:1462 * OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA * SCTID:362301008 - * UMLS:C0013313 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dura_Mater] + * UMLS:C0013313 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dura_Mater ] * Wikipedia:Dura_mater * http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg * ncithesaurus:Dura_Mater @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid[Wikipedia:Dura_mater]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002463.md b/md/UBERON/63/UBERON_0002463.md index c71246f1aa..dfb6c08eec 100644 --- a/md/UBERON/63/UBERON_0002463.md +++ b/md/UBERON/63/UBERON_0002463.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002463 * *Label* = hamstring muscle - * *Definition* = In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hamstring] + * *Definition* = In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hamstring ] * *Comment* = check FMA, singular. ## Synonyms @@ -11,8 +11,8 @@ * hamstring muscles * hamstring muscles set * hamstrings - * hamstring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000844] - * set of hamstring muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81022] + * hamstring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000844 ] + * set of hamstring muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81022 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:81022 * MA:0002312 * OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA - * UMLS:C0584895 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hamstring] + * UMLS:C0584895 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hamstring ] * VHOG:0000844 * Wikipedia:Hamstring * http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002563.md b/md/UBERON/63/UBERON_0002563.md index c8960df7aa..9f48495f07 100644 --- a/md/UBERON/63/UBERON_0002563.md +++ b/md/UBERON/63/UBERON_0002563.md @@ -6,14 +6,14 @@ ## Synonyms - * chief nucleus of inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72413] - * inferior colliculus, central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72413] + * chief nucleus of inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72413 ] + * inferior colliculus, central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72413 ] * nucleus of inferior colliculus (crosby) - * Inferior colliculus central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICc] - * central cortex of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CIC] - * central nucleus of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:479] - * inferior colliculus central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICc] - * nucleus centralis (colliculi inferioris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:479[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Inferior colliculus central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICc ] + * central cortex of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CIC ] + * central nucleus of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:479 ] + * inferior colliculus central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICc ] + * nucleus centralis (colliculi inferioris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:479, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,8 +24,8 @@ * BM:MB-Tec-ICC * FMA:72413 * NIF_GrossAnatomy:birnlex_1035 - * NeuroNames:479 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1035] - * UMLS:C0175371 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1035] + * NeuroNames:479 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1035 ] + * UMLS:C0175371 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1035 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002663.md b/md/UBERON/63/UBERON_0002663.md index 15f04ca230..a573342a2a 100644 --- a/md/UBERON/63/UBERON_0002663.md +++ b/md/UBERON/63/UBERON_0002663.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002663 * *Label* = septal nuclear complex - * *Definition* = Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1313] + * *Definition* = Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1313 ] * *Comment* = AO notes: in NIFSTD this is the mereological sum of the individual complexes - in MA it is the superclass ## Synonyms - * parolfactory nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61845] - * septal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61845] - * septal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002978] - * nuclei septales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Septal_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * parolfactory nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61845 ] + * septal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61845 ] + * septal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002978 ] + * nuclei septales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Septal_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A08.186.211.577.750.800 * NIF_GrossAnatomy:birnlex_1313 * NeuroNames:259 - * UMLS:C0036687 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1313] + * UMLS:C0036687 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1313 ] * Wikipedia:Septal_nuclei ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted][Wikipedia:Septal_nuclei]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002763.md b/md/UBERON/63/UBERON_0002763.md index 762a5a9740..d269659d0e 100644 --- a/md/UBERON/63/UBERON_0002763.md +++ b/md/UBERON/63/UBERON_0002763.md @@ -6,19 +6,19 @@ ## Synonyms - * accessory medullar lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1626] - * accessory medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471] - * accessory medullary lamina of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471] - * accessory medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471] - * accessory medullary lamina pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471] - * incomplete medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471] - * lamina medullaris accessoria corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62471[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * accessory medullary lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236] - * incomplete medullary lamina of the globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:icml] - * lamella pallidi incompleta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris accessoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris incompleta pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina pallidi incompleta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * accessory medullar lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1626 ] + * accessory medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471 ] + * accessory medullary lamina of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471 ] + * accessory medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471 ] + * accessory medullary lamina pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471 ] + * incomplete medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471 ] + * lamina medullaris accessoria corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62471, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * accessory medullary lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236 ] + * incomplete medullary lamina of the globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:icml ] + * lamella pallidi incompleta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris accessoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris incompleta pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina pallidi incompleta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,8 +26,8 @@ * BAMS:icml * FMA:62471 * NIF_GrossAnatomy:birnlex_1626 - * NeuroNames:236 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1626] - * UMLS:C0175213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1626] + * NeuroNames:236 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1626 ] + * UMLS:C0175213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1626 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002863.md b/md/UBERON/63/UBERON_0002863.md index 9ae5ffbba4..8288c698ac 100644 --- a/md/UBERON/63/UBERON_0002863.md +++ b/md/UBERON/63/UBERON_0002863.md @@ -6,14 +6,14 @@ ## Synonyms - * fifth sacral dorsal root ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6346] - * fifth sacral spinal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6346] + * fifth sacral dorsal root ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6346 ] + * fifth sacral spinal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6346 ] ## Cross-references * FMA:6346 * NIF_GrossAnatomy:birnlex_2632 - * UMLS:C0501724 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2632] + * UMLS:C0501724 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2632 ] ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0002963.md b/md/UBERON/63/UBERON_0002963.md index 12d30d44b3..23f5917430 100644 --- a/md/UBERON/63/UBERON_0002963.md +++ b/md/UBERON/63/UBERON_0002963.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002963 * *Label* = caudal pontine reticular nucleus - * *Definition* = The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudal_pontine_reticular_nucleus] + * *Definition* = The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudal_pontine_reticular_nucleus ] ## Synonyms - * pontine reticular nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72469] - * Pontine reticular nucleus caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNc] - * nucleus reticularis pontis caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudal_pontine_reticular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pontine reticular nucleus caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNc] - * pontine reticular nucleus caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PnC] + * pontine reticular nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72469 ] + * Pontine reticular nucleus caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNc ] + * nucleus reticularis pontis caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudal_pontine_reticular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pontine reticular nucleus caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNc ] + * pontine reticular nucleus caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PnC ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003063.md b/md/UBERON/63/UBERON_0003063.md index fb6de6d2db..8ce19ade37 100644 --- a/md/UBERON/63/UBERON_0003063.md +++ b/md/UBERON/63/UBERON_0003063.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003063 * *Label* = prechordal plate - * *Definition* = a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chordamesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prechordal_plate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chordamesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prechordal_plate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = todo - check; developmental relationship to anterior hypoblast in ZFA? ## Synonyms - * head mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000079] - * head mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000079] + * head mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000079 ] + * head mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000079 ] ## Cross-references @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = There are two opposing models that can potentially explain the differences in gsc (goosecoid) expression between amphioxus and vertebrates. In one model, the vertebrate gsc expression pattern more closely resembles the common ancestral state and the amphioxus gsc expression pattern is a derivation associated with its unique morphology. (...) In an alternate model, the amphioxus gsc expression pattern most closely represents the common ancestral state and the vertebrate pattern is derived. This model suggests that the evolution of vertebrates was accompanied by the segregation of gsc expression, from a more general domain underlying the entire brain anlage to a distinct forebrain organizer domain and subsequent prechordal plate. We feel this second model is more parsimonious than the first model in that what would be novel anterior gsc expression in vertebrates directly correlates with a novel vertebrate anterior structure, the prechordal plate.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004881 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003163.md b/md/UBERON/63/UBERON_0003163.md index a674db7e61..a011b84a91 100644 --- a/md/UBERON/63/UBERON_0003163.md +++ b/md/UBERON/63/UBERON_0003163.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004520 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000639 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003163 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_0003363.md b/md/UBERON/63/UBERON_0003363.md index 7579bd3635..c773470f54 100644 --- a/md/UBERON/63/UBERON_0003363.md +++ b/md/UBERON/63/UBERON_0003363.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003363 * *Label* = epithelium of ductus reuniens - * *Definition* = An epithelium that is part of a ductus reuniens [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a ductus reuniens [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ductus reuniens epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus reuniens epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of ductus reuniens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ductus reuniens epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus reuniens epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of ductus reuniens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ductus reuniens](../../UBERON/61/UBERON_0001861.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003463.md b/md/UBERON/63/UBERON_0003463.md index 8ce9098a1a..248671f5da 100644 --- a/md/UBERON/63/UBERON_0003463.md +++ b/md/UBERON/63/UBERON_0003463.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003463 * *Label* = trunk bone - * *Definition* = A bone that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bone of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003563.md b/md/UBERON/63/UBERON_0003563.md index e6016512d7..27c3f8acea 100644 --- a/md/UBERON/63/UBERON_0003563.md +++ b/md/UBERON/63/UBERON_0003563.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003563 * *Label* = telencephalon dura mater - * *Definition* = A dura mater that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dura mater of neuraxis of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * telencephalon dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * dura mater of neuraxis of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * telencephalon dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003663.md b/md/UBERON/63/UBERON_0003663.md index c9e754fe23..24f8a1cb03 100644 --- a/md/UBERON/63/UBERON_0003663.md +++ b/md/UBERON/63/UBERON_0003663.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003663 * *Label* = hindlimb muscle - * *Definition* = A muscle organ that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * free lower limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37368] - * hind limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower limb skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * muscle of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37368] - * muscle of posterior limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscle organ of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * free lower limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37368 ] + * hind limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower limb skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * muscle of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37368 ] + * muscle of posterior limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscle organ of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003863.md b/md/UBERON/63/UBERON_0003863.md index b0a1587202..51726330f9 100644 --- a/md/UBERON/63/UBERON_0003863.md +++ b/md/UBERON/63/UBERON_0003863.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003863 * *Label* = pedal digit 5 phalanx - * *Definition* = A phalanx that is part of a foot digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A phalanx that is part of a foot digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit long bone of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 5 digit long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 5 long bone of digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001385] - * hind limb digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * little toe phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32902] - * long bone of digit of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32902] - * phalanx of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32902] - * phalanx of foot digit 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32902] - * foot digit 5 phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit long bone of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 5 digit long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 5 long bone of digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001385 ] + * hind limb digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * little toe phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32902 ] + * long bone of digit of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32902 ] + * phalanx of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32902 ] + * phalanx of foot digit 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32902 ] + * foot digit 5 phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,7 +26,7 @@ * FMA:32902 * MA:0001385 * SCTID:361806005 - * UMLS:C1708088 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Digit_5_Phalanx] + * UMLS:C1708088 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Digit_5_Phalanx ] * ncithesaurus:Foot_Digit_5_Phalanx ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) and [phalanx](../../UBERON/21/UBERON_0003221.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0003963.md b/md/UBERON/63/UBERON_0003963.md index bef1c88d13..67350ba5ae 100644 --- a/md/UBERON/63/UBERON_0003963.md +++ b/md/UBERON/63/UBERON_0003963.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003963 * *Label* = otic ganglion - * *Definition* = the ganglion that supplies nerve fibers to the parotid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_ganglion] + * *Definition* = the ganglion that supplies nerve fibers to the parotid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_ganglion ] ## Synonyms - * arnold's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6967] - * ganglion oticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arnold's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6967 ] + * ganglion oticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004063.md b/md/UBERON/63/UBERON_0004063.md index 4e7905ff12..d26025df66 100644 --- a/md/UBERON/63/UBERON_0004063.md +++ b/md/UBERON/63/UBERON_0004063.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004063 * *Label* = spinal cord alar plate - * *Definition* = the region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009692] + * *Definition* = the region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009692 ] * *Comment* = TODO - merge with UBERON:0003054 roof plate? ## Synonyms - * alar column spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000899] - * spinal cord alar column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009692] - * spinal cord alar lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009692] + * alar column spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000899 ] + * spinal cord alar column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009692 ] + * spinal cord alar lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009692 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004163.md b/md/UBERON/63/UBERON_0004163.md index c2341e96f9..409161473b 100644 --- a/md/UBERON/63/UBERON_0004163.md +++ b/md/UBERON/63/UBERON_0004163.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004163 * *Label* = anterior ectodermal midgut - * *Definition* = portions of the midgut that are derived from ectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007441] + * *Definition* = portions of the midgut that are derived from ectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007441 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004263.md b/md/UBERON/63/UBERON_0004263.md index 98ce45cd89..b46202df54 100644 --- a/md/UBERON/63/UBERON_0004263.md +++ b/md/UBERON/63/UBERON_0004263.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004263 * *Label* = upper arm skin - * *Definition* = A zone of skin that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb stylopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of Proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of arm stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of brachial region stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of proximal segment of free upper limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of stylopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of arm skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of brachial region skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of proximal segment of free upper limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb stylopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of Proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of arm stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of brachial region stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of proximal segment of free upper limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of stylopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of arm skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of brachial region skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of proximal segment of free upper limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004363.md b/md/UBERON/63/UBERON_0004363.md index 4f500583bb..e7db5c7eeb 100644 --- a/md/UBERON/63/UBERON_0004363.md +++ b/md/UBERON/63/UBERON_0004363.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004363 * *Label* = aortic arch - * *Definition* = One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002672] + * *Definition* = One of a series of paired embryological vascular structures formed within a pharyngeal arch; in the adult, some of these vessels give rise to the great vessels[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002672 ] * *Comment* = Usage notes: Do not confuse with arch of aorta. Editor notes: add specific artery derivatives. Development notes: The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches. Taxon notes: Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods ## Synonyms - * aortic arches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005004[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * branchial aortic arches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-080512-6[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * branchial arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16684] - * embryonic aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16684[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002672] - * pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002672] - * a. arcuum pharyngeorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_arches[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aortic arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16684] - * arteriae arcuum pharyngeorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aortic_arches[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pharyngeal arch artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000122] + * aortic arches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005004, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * branchial aortic arches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-080512-6, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * branchial arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16684 ] + * embryonic aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16684, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002672 ] + * pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002672 ] + * a. arcuum pharyngeorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_arches, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aortic arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16684 ] + * arteriae arcuum pharyngeorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aortic_arches, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pharyngeal arch artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000122 ] ## Cross-references @@ -27,7 +27,7 @@ * EHDAA:7327 * EMAPA:16684 * TAO:0005004 - * UMLS:C0003489 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aortic_Arch] + * UMLS:C0003489 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aortic_Arch ] * VHOG:0000122 * Wikipedia:Aortic_arches * XAO:0000341 @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004342 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004463.md b/md/UBERON/63/UBERON_0004463.md index 7c0a18332b..a4865e1385 100644 --- a/md/UBERON/63/UBERON_0004463.md +++ b/md/UBERON/63/UBERON_0004463.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004463 * *Label* = musculature of hindlimb stylopod - * *Definition* = Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a hindlimb stylopod (upper leg / thigh)[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50208] - * musculature of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50208] - * set of muscles of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50208] - * thigh musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50208] + * muscle group of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50208 ] + * musculature of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50208 ] + * set of muscles of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50208 ] + * thigh musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50208 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004563.md b/md/UBERON/63/UBERON_0004563.md index f9e2067cd2..bb9507340c 100644 --- a/md/UBERON/63/UBERON_0004563.md +++ b/md/UBERON/63/UBERON_0004563.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004563 * *Label* = forelimb digital vein - * *Definition* = A digital vein that is part of a forelimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digital vein that is part of a forelimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forelimb digital veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002120] + * forelimb digital veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002120 ] * vein of finger * vein of manual digit - * wing digital vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing digital vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digital vein](../../UBERON/62/UBERON_0004562.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004663.md b/md/UBERON/63/UBERON_0004663.md index 58049ca255..ada197a2b5 100644 --- a/md/UBERON/63/UBERON_0004663.md +++ b/md/UBERON/63/UBERON_0004663.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004663 * *Label* = aorta wall - * *Definition* = An anatomical wall that is part of an aorta [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of an aorta [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Aortic wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14156] - * wall of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14156] + * Aortic wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14156 ] + * wall of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14156 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004763.md b/md/UBERON/63/UBERON_0004763.md index c629580367..940d966230 100644 --- a/md/UBERON/63/UBERON_0004763.md +++ b/md/UBERON/63/UBERON_0004763.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004763 * *Label* = endochondral bone tissue - * *Definition* = Replacement bone tissue that forms within cartilage[VSAO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000145[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endochondral_ossification] + * *Definition* = Replacement bone tissue that forms within cartilage[VSAO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000145, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endochondral_ossification ] * *Comment* = The text and logical definition of this term was modified from the definition of 'endochondral bone' in ZFA. AO notes: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [output_of](../../core#output/of/core#output_of.md) some [endochondral ossification](../../GO/58/GO_0001958.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0004863.md b/md/UBERON/63/UBERON_0004863.md index 9c0cf2559d..8e385ad95c 100644 --- a/md/UBERON/63/UBERON_0004863.md +++ b/md/UBERON/63/UBERON_0004863.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004863 * *Label* = thoracic sympathetic nerve trunk - * *Definition* = A sympathetic nerve trunk that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sympathetic nerve trunk that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve trunk of sympathetic nervous system of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve trunk of sympathetic part of autonomic division of nervous system of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sympathetic nerve trunk of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sympathetic nervous system nerve trunk of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic part of sympathetic trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6262] - * thoracic sympathetic chain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6262] - * thorax nerve trunk of sympathetic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax nerve trunk of sympathetic part of autonomic division of nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax sympathetic nerve trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax sympathetic nervous system nerve trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic sympathetic trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6262] + * nerve trunk of sympathetic nervous system of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve trunk of sympathetic part of autonomic division of nervous system of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sympathetic nerve trunk of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sympathetic nervous system nerve trunk of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic part of sympathetic trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6262 ] + * thoracic sympathetic chain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6262 ] + * thorax nerve trunk of sympathetic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax nerve trunk of sympathetic part of autonomic division of nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax sympathetic nerve trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax sympathetic nervous system nerve trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic sympathetic trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6262 ] ## Cross-references * FMA:6262 * MA:0001165 - * UMLS:C1710393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk] + * UMLS:C1710393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk ] * ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [sympathetic nerve trunk](../../UBERON/95/UBERON_0004295.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005063.md b/md/UBERON/63/UBERON_0005063.md index be9d7fa29c..60d1583c2e 100644 --- a/md/UBERON/63/UBERON_0005063.md +++ b/md/UBERON/63/UBERON_0005063.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005063 * *Label* = left ventricular compact myocardium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003224] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003224 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compact layer of ventricle](../../UBERON/27/UBERON_0004127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005263.md b/md/UBERON/63/UBERON_0005263.md index 379f3026c0..f52ffabf60 100644 --- a/md/UBERON/63/UBERON_0005263.md +++ b/md/UBERON/63/UBERON_0005263.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005263 * *Label* = outflow tract cardiac jelly - * *Definition* = A cardiac jelly that is part of a outflow tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac jelly that is part of a outflow tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac jelly](../../UBERON/06/UBERON_0003906.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cardiac jelly that is part of the outflow tract. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005363.md b/md/UBERON/63/UBERON_0005363.md index 8fa16ee5f1..f19451ea48 100644 --- a/md/UBERON/63/UBERON_0005363.md +++ b/md/UBERON/63/UBERON_0005363.md @@ -6,19 +6,19 @@ ## Synonyms - * ganglion inferius (nervus vagus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * ganglion inferius nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_vagus_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion inferius nervus vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion nodosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ganglion_of_vagus_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior ganglion of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * inferior ganglion of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * nodose ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * tenth cranial nerve nodose ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * vagus nerve inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * vagus nerve nodose ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6230] - * inferior vagus X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17155] - * nodose ganglia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * vagus X inferior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000685] + * ganglion inferius (nervus vagus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * ganglion inferius nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_vagus_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion inferius nervus vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion nodosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ganglion_of_vagus_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior ganglion of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * inferior ganglion of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * nodose ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * tenth cranial nerve nodose ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * vagus nerve inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * vagus nerve nodose ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6230 ] + * inferior vagus X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17155 ] + * nodose ganglia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * vagus X inferior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000685 ] ## Cross-references @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005463.md b/md/UBERON/63/UBERON_0005463.md index 59fca394c0..da6515d9cf 100644 --- a/md/UBERON/63/UBERON_0005463.md +++ b/md/UBERON/63/UBERON_0005463.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005463 * *Label* = marginal sinus of lymph node - * *Definition* = The subcapsular sinus (lymph path, lymph sinus, marginal sinus) is a region within the lymph node immediately deep to the capsule that contains relatively sparse lymphocytes. It thus allows lymph to flow freely through it. The lymph node contains lymphoid tissue, i.e. , a meshwork or fibers called reticulum with white blood cells enmeshed in it. The regions where there are few cells within the meshwork are known lymph sinus. It is lined by reticular cells, fibroblasts and fixed macrophages. Thus, subcapsular (sub=below) sinus lies immediately deep to the capsule of the lymph node and immediately above the cortex. It is continuous with the similar lymph sinuses that flank the trabeculae (the extensions of capsule within the substance of the lymph node). The subcapsular sinus is of clinical importance as it is the most likely location where the earliest manifestations of a metastatic carcinoma in a lymph node would be found. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcapsular_sinus] + * *Definition* = The subcapsular sinus (lymph path, lymph sinus, marginal sinus) is a region within the lymph node immediately deep to the capsule that contains relatively sparse lymphocytes. It thus allows lymph to flow freely through it. The lymph node contains lymphoid tissue, i.e. , a meshwork or fibers called reticulum with white blood cells enmeshed in it. The regions where there are few cells within the meshwork are known lymph sinus. It is lined by reticular cells, fibroblasts and fixed macrophages. Thus, subcapsular (sub=below) sinus lies immediately deep to the capsule of the lymph node and immediately above the cortex. It is continuous with the similar lymph sinuses that flank the trabeculae (the extensions of capsule within the substance of the lymph node). The subcapsular sinus is of clinical importance as it is the most likely location where the earliest manifestations of a metastatic carcinoma in a lymph node would be found. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcapsular_sinus ] * *Comment* = todo - add syns to disambiguate from rodent speen marginal sinus ## Synonyms - * marginal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50766] - * lymph path [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcapsular_sinus] - * lymph sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcapsular_sinus] - * subcapsular sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcapsular_sinus] + * marginal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50766 ] + * lymph path [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcapsular_sinus ] + * lymph sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcapsular_sinus ] + * subcapsular sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcapsular_sinus ] ## Cross-references @@ -19,8 +19,8 @@ * EHDAA:8693 * FMA:50766 * SCTID:361511003 - * UMLS:C1518051 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node_Sinus] - * UMLS:C1518052 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node_Subcapsular_Sinus] + * UMLS:C1518051 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node_Sinus ] + * UMLS:C1518052 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node_Subcapsular_Sinus ] * Wikipedia:Subcapsular_sinus * http://upload.wikimedia.org/wikipedia/commons/6/68/Gray597.png * ncithesaurus:Lymph_Node_Sinus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005563.md b/md/UBERON/63/UBERON_0005563.md index 50ec26b4f5..3529b9a12e 100644 --- a/md/UBERON/63/UBERON_0005563.md +++ b/md/UBERON/63/UBERON_0005563.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005563 * *Label* = trigeminal neural crest - * *Definition* = Cranial neural crest which gives rise to the trigeminal ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000080] + * *Definition* = Cranial neural crest which gives rise to the trigeminal ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000080 ] * *Comment* = Editor note: todo - compare ZFA and EHDAA2 representation ## Synonyms @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0005863.md b/md/UBERON/63/UBERON_0005863.md index 12de0c8c45..133af906cb 100644 --- a/md/UBERON/63/UBERON_0005863.md +++ b/md/UBERON/63/UBERON_0005863.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005863 * *Label* = cartilaginous condensation - * *Definition* = Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:curator] + * *Definition* = Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:curator ] * *Comment* = AO notes: isa cell condensation in VSAO; has_part chondroblast in AEO ## Synonyms - * cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25353] - * cartilagenous condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003147] - * chondrogenic condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000092] + * cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25353 ] + * cartilagenous condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003147 ] + * chondrogenic condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000092 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006063.md b/md/UBERON/63/UBERON_0006063.md index b644cc257e..965bc1edc8 100644 --- a/md/UBERON/63/UBERON_0006063.md +++ b/md/UBERON/63/UBERON_0006063.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006063 * *Label* = cartilaginous neural arch - * *Definition* = One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001763] + * *Definition* = One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001763 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006163.md b/md/UBERON/63/UBERON_0006163.md index 8776637ab1..73476f4678 100644 --- a/md/UBERON/63/UBERON_0006163.md +++ b/md/UBERON/63/UBERON_0006163.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006163 * *Label* = dorsal digital artery - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_digital_arteries#] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_digital_arteries# ] * *Comment* = Note Wikipedia article refers to manual dorsal digital artery ## Synonyms - * arteriae digitales dorsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70801[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70801] - * dorsal digital arteries set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70801] - * set of dorsal digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70801] + * arteriae digitales dorsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70801, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70801 ] + * dorsal digital arteries set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70801 ] + * set of dorsal digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70801 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006263.md b/md/UBERON/63/UBERON_0006263.md index 6b0447863d..225597f297 100644 --- a/md/UBERON/63/UBERON_0006263.md +++ b/md/UBERON/63/UBERON_0006263.md @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006463.md b/md/UBERON/63/UBERON_0006463.md index 5c3d039d8f..5766c29832 100644 --- a/md/UBERON/63/UBERON_0006463.md +++ b/md/UBERON/63/UBERON_0006463.md @@ -6,15 +6,15 @@ ## Synonyms - * S4 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256631] - * S4 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1548] + * S4 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256631 ] + * S4 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1548 ] ## Cross-references * FMA:256631 * NIF_GrossAnatomy:birnlex_1548 * SCTID:278783002 - * UMLS:C0457879 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1548] + * UMLS:C0457879 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1548 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006563.md b/md/UBERON/63/UBERON_0006563.md index 72695bb9dd..2443796fdf 100644 --- a/md/UBERON/63/UBERON_0006563.md +++ b/md/UBERON/63/UBERON_0006563.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006563 * *Label* = tunica media of pulmonary trunk - * *Definition* = Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85030[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85030, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary trunk](../../UBERON/33/UBERON_0002333.md) and [tunica media](../../UBERON/22/UBERON_0002522.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006663.md b/md/UBERON/63/UBERON_0006663.md index b1aa4c31e3..3e8421cce9 100644 --- a/md/UBERON/63/UBERON_0006663.md +++ b/md/UBERON/63/UBERON_0006663.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006663 * *Label* = hemiazygos vein - * *Definition* = The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemiazygos_vein] + * *Definition* = The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemiazygos_vein ] * *Comment* = Taxon notes: The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava. ## Synonyms - * hemi-azygos vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4944] - * hemiazygous vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4944] - * inferior hemi-azygos vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4944] - * vena hemiazygos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4944[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hemiazygos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemiazygos_vein] - * hemiazygos veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemiazygos_vein] - * hemiazygous vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemiazygos_vein] - * vena hemiazygos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hemiazygos_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hemi-azygos vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4944 ] + * hemiazygous vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4944 ] + * inferior hemi-azygos vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4944 ] + * vena hemiazygos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4944, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hemiazygos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemiazygos_vein ] + * hemiazygos veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemiazygos_vein ] + * hemiazygous vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemiazygos_vein ] + * vena hemiazygos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hemiazygos_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006763.md b/md/UBERON/63/UBERON_0006763.md index be95f6d0d1..4a59ec0398 100644 --- a/md/UBERON/63/UBERON_0006763.md +++ b/md/UBERON/63/UBERON_0006763.md @@ -7,15 +7,15 @@ ## Synonyms - * conjunctiva epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62131] - * conjunctival epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005131] + * conjunctiva epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62131 ] + * conjunctival epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005131 ] ## Cross-references * BTO:0005131 * EFO:0001916 * FMA:62131 - * UMLS:C1179037 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Conjunctival_Epithelium] + * UMLS:C1179037 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Conjunctival_Epithelium ] * ncithesaurus:Conjunctival_Epithelium ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [conjunctiva](../../UBERON/11/UBERON_0001811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0006863.md b/md/UBERON/63/UBERON_0006863.md index 7a1b46d2e3..7e08cfa62d 100644 --- a/md/UBERON/63/UBERON_0006863.md +++ b/md/UBERON/63/UBERON_0006863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006863 * *Label* = proximal metaphysis of femur - * *Definition* = A proximal metaphysis that is part of a femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal metaphysis that is part of a femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [proximal metaphysis](../../UBERON/78/UBERON_0004378.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0007163.md b/md/UBERON/63/UBERON_0007163.md index c4a302aa15..08dbfc9110 100644 --- a/md/UBERON/63/UBERON_0007163.md +++ b/md/UBERON/63/UBERON_0007163.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007163 * *Label* = superior meatus - * *Definition* = The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_nasal_meatus] + * *Definition* = The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_nasal_meatus ] * *Comment* = todo - check FMA ## Synonyms - * meatus nasi superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_nasal_meatus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior nasal meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_nasal_meatus] + * meatus nasi superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_nasal_meatus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior nasal meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_nasal_meatus ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0007263.md b/md/UBERON/63/UBERON_0007263.md index 1dc44c092d..2340fbacad 100644 --- a/md/UBERON/63/UBERON_0007263.md +++ b/md/UBERON/63/UBERON_0007263.md @@ -6,7 +6,7 @@ ## Synonyms - * intervertebral disk, C6-C7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13899] + * intervertebral disk, C6-C7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13899 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 6](../../UBERON/15/UBERON_0004615.md) and [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 7](../../UBERON/16/UBERON_0004616.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0007763.md b/md/UBERON/63/UBERON_0007763.md index 8a23a77434..74523b2395 100644 --- a/md/UBERON/63/UBERON_0007763.md +++ b/md/UBERON/63/UBERON_0007763.md @@ -7,8 +7,8 @@ ## Synonyms - * neuraxis culmen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83886] - * culmen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001001[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_926] + * neuraxis culmen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83886 ] + * culmen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001001, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_926 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0008263.md b/md/UBERON/63/UBERON_0008263.md index d8740ad41c..f9ef29e7c1 100644 --- a/md/UBERON/63/UBERON_0008263.md +++ b/md/UBERON/63/UBERON_0008263.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0008463.md b/md/UBERON/63/UBERON_0008463.md index 5655e3f878..3b54713873 100644 --- a/md/UBERON/63/UBERON_0008463.md +++ b/md/UBERON/63/UBERON_0008463.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008463 * *Label* = inferior articular process of thoracic vertebra - * *Definition* = An inferior articular process of vertebra that is part of a thoracic vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An inferior articular process of vertebra that is part of a thoracic vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * caudal articular process of thoracic vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9156] - * inferior apophyseal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9156] - * inferior zygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9156] - * processus articularis (zygapophysis) thoracicus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9156] + * caudal articular process of thoracic vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9156 ] + * inferior apophyseal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9156 ] + * inferior zygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9156 ] + * processus articularis (zygapophysis) thoracicus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9156 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inferior articular process of vertebra](../../UBERON/80/UBERON_0001080.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0008863.md b/md/UBERON/63/UBERON_0008863.md index de6c782dfd..411cfad608 100644 --- a/md/UBERON/63/UBERON_0008863.md +++ b/md/UBERON/63/UBERON_0008863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008863 * *Label* = stomach smooth muscle outer longitudinal layer - * *Definition* = the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010805] + * *Definition* = the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010805 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0008963.md b/md/UBERON/63/UBERON_0008963.md index 8cc86978e6..902aa6c3b1 100644 --- a/md/UBERON/63/UBERON_0008963.md +++ b/md/UBERON/63/UBERON_0008963.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008963 * *Label* = hoof - * *Definition* = The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hoof] + * *Definition* = The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hoof ] * *Comment* = The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0009063.md b/md/UBERON/63/UBERON_0009063.md index 0dd1e49a3e..880bc3bfb2 100644 --- a/md/UBERON/63/UBERON_0009063.md +++ b/md/UBERON/63/UBERON_0009063.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0009563.md b/md/UBERON/63/UBERON_0009563.md index 53e5df8702..a4fdc8099b 100644 --- a/md/UBERON/63/UBERON_0009563.md +++ b/md/UBERON/63/UBERON_0009563.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009563 * *Label* = pastern region of limb - * *Definition* = a part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pastern] + * *Definition* = a part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pastern ] * *Comment* = In future this may be merged into a more species-neutral class for the distal and medial segments of a digit. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009563 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0009663.md b/md/UBERON/63/UBERON_0009663.md index 35f57b096a..62e7f87b3e 100644 --- a/md/UBERON/63/UBERON_0009663.md +++ b/md/UBERON/63/UBERON_0009663.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009663 * *Label* = telencephalic nucleus - * *Definition* = A nucleus of brain that is part of a telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0009863.md b/md/UBERON/63/UBERON_0009863.md index 86e87fd59a..ab58d7080c 100644 --- a/md/UBERON/63/UBERON_0009863.md +++ b/md/UBERON/63/UBERON_0009863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009863 * *Label* = ascidian ciliated funnel - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21558186] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21558186 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0009963.md b/md/UBERON/63/UBERON_0009963.md index 3245bd6be2..4f04e11254 100644 --- a/md/UBERON/63/UBERON_0009963.md +++ b/md/UBERON/63/UBERON_0009963.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009963 * *Label* = antennal gland - * *Definition* = Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000075[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000075, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor note: consider also classifying this as a renal tubule - or separate terms for coiled/nephridial canal. Editor note: cede this term to Arthropod AO ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0010063.md b/md/UBERON/63/UBERON_0010063.md index c91c943813..b47d7482e5 100644 --- a/md/UBERON/63/UBERON_0010063.md +++ b/md/UBERON/63/UBERON_0010063.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0010163.md b/md/UBERON/63/UBERON_0010163.md index beec04ef82..161a5449d2 100644 --- a/md/UBERON/63/UBERON_0010163.md +++ b/md/UBERON/63/UBERON_0010163.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010163 * *Label* = eyebrow - * *Definition* = The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyebrow] + * *Definition* = The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyebrow ] * *Comment* = AO notes: in ncit, this is an "eye appendage" ## Synonyms - * supercilium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eyebrow[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * supercilium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eyebrow, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:54237 * MESH:A01.456.505.420.338 * SCTID:265781000 - * UMLS:C0015420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyebrow] + * UMLS:C0015420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyebrow ] * Wikipedia:Eyebrow * http://upload.wikimedia.org/wikipedia/commons/2/29/Eyes_chris.jpg * ncithesaurus:Eyebrow @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0010263.md b/md/UBERON/63/UBERON_0010263.md index b7b0a893b2..3d8eabd6ca 100644 --- a/md/UBERON/63/UBERON_0010263.md +++ b/md/UBERON/63/UBERON_0010263.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010263 * *Label* = obsolete embryoid body - * *Definition* = Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001718[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Embryoid_body] + * *Definition* = Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001718, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Embryoid_body ] * *Comment* = Obsoled, as does not cover naturally occurring entity ## Synonyms @@ -28,9 +28,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = BTO:0001718 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010263 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_0010363.md b/md/UBERON/63/UBERON_0010363.md index 86e6c5fa0f..ec35ee26c7 100644 --- a/md/UBERON/63/UBERON_0010363.md +++ b/md/UBERON/63/UBERON_0010363.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010363 * *Label* = endochondral element - * *Definition* = A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000139[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000139, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * endochondral replacement element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000139] + * endochondral replacement element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000139 ] ## Cross-references @@ -30,9 +30,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010363 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000009 +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_0010863.md b/md/UBERON/63/UBERON_0010863.md index 1bfc262a74..f7b33bfd9e 100644 --- a/md/UBERON/63/UBERON_0010863.md +++ b/md/UBERON/63/UBERON_0010863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010863 * *Label* = dactylopatagium brevis - * *Definition* = A dactylopatagium that is connected_to a manual digit 1 and connected_to a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dactylopatagium that is connected_to a manual digit 1 and connected_to a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [dactylopatagium](../../UBERON/62/UBERON_0010862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0010963.md b/md/UBERON/63/UBERON_0010963.md index db444742b7..2600a4ee3e 100644 --- a/md/UBERON/63/UBERON_0010963.md +++ b/md/UBERON/63/UBERON_0010963.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011163.md b/md/UBERON/63/UBERON_0011163.md index a0ac1ab33e..336f4b2241 100644 --- a/md/UBERON/63/UBERON_0011163.md +++ b/md/UBERON/63/UBERON_0011163.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011163 * *Label* = supraoccipital pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a supraoccipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a supraoccipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * supra-occipital pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001963] + * supra-occipital pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001963 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [supraoccipital bone](../../UBERON/47/UBERON_0004747.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011163 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011263.md b/md/UBERON/63/UBERON_0011263.md index 03ccf9a685..d205e1c9f5 100644 --- a/md/UBERON/63/UBERON_0011263.md +++ b/md/UBERON/63/UBERON_0011263.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011263 * *Label* = femoral gland - * *Definition* = A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011263 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011363.md b/md/UBERON/63/UBERON_0011363.md index 9bceb9e42d..45b8a263d9 100644 --- a/md/UBERON/63/UBERON_0011363.md +++ b/md/UBERON/63/UBERON_0011363.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011363 * *Label* = cranial lymph vasculature - * *Definition* = A lymph vasculature that is part of a head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymph vasculature that is part of a head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * set of lymphatic vessels of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:224562] - * cranial lymph vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005298[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * set of lymphatic vessels of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:224562 ] + * cranial lymph vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005298, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymph vasculature](../../UBERON/36/UBERON_0004536.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011663.md b/md/UBERON/63/UBERON_0011663.md index 2a585edd35..e2e2d0987c 100644 --- a/md/UBERON/63/UBERON_0011663.md +++ b/md/UBERON/63/UBERON_0011663.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011863.md b/md/UBERON/63/UBERON_0011863.md index 54ac9ff45f..01da3a0cd4 100644 --- a/md/UBERON/63/UBERON_0011863.md +++ b/md/UBERON/63/UBERON_0011863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011863 * *Label* = bone collagen fibril - * *Definition* = the connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011642] + * *Definition* = the connective tissue bundles in the extracellular matrix of bone tissue that are composed of collagen, and play a role in tissue strength and elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011642 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collagen fibril](../../UBERON/60/UBERON_0011860.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0011963.md b/md/UBERON/63/UBERON_0011963.md index 5ff995b193..654a605ffe 100644 --- a/md/UBERON/63/UBERON_0011963.md +++ b/md/UBERON/63/UBERON_0011963.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011963 * *Label* = talocalcaneonavicular joint - * *Definition* = The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talocalcaneonavicular_articulation] + * *Definition* = The talocalcaneonavicular articulation is an arthrodial joint: the rounded head of the talus being received into the concavity formed by the posterior surface of the navicular, the anterior articular surface of the calcaneus, and the upper surface of the plantar calcaneonavicular ligament. There are two ligaments in this joint: the articular capsule and the dorsal talonavicular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talocalcaneonavicular_articulation ] ## Synonyms - * articulatio talocalcaneonavicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talocalcaneonavicular_articulation[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * talocalcaneonavicular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talocalcaneonavicular_articulation] + * articulatio talocalcaneonavicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talocalcaneonavicular_articulation, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * talocalcaneonavicular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talocalcaneonavicular_articulation ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [calcaneus](../../UBERON/50/UBERON_0001450.md) and [connects](../../ts/core#connects.md) some [navicular bone of pes](../../UBERON/51/UBERON_0001451.md) and [connects](../../ts/core#connects.md) some [talus](../../UBERON/95/UBERON_0002395.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011963 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0012063.md b/md/UBERON/63/UBERON_0012063.md index 07d02ba553..762847c39c 100644 --- a/md/UBERON/63/UBERON_0012063.md +++ b/md/UBERON/63/UBERON_0012063.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012063 * *Label* = lobar bronchus of right lung middle lobe - * *Definition* = A lobar bronchus that is part of a middle lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a middle lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus of right middle lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7401] - * middle lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7401] - * middle lobe bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7401] + * bronchus of right middle lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7401 ] + * middle lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7401 ] + * middle lobe bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7401 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle lobe of right lung](../../UBERON/74/UBERON_0002174.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0012263.md b/md/UBERON/63/UBERON_0012263.md index abfc33a8a8..f3d3741bb3 100644 --- a/md/UBERON/63/UBERON_0012263.md +++ b/md/UBERON/63/UBERON_0012263.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0013583 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012263 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_0012363.md b/md/UBERON/63/UBERON_0012363.md index 705aba0156..05fa815cfa 100644 --- a/md/UBERON/63/UBERON_0012363.md +++ b/md/UBERON/63/UBERON_0012363.md @@ -6,9 +6,9 @@ ## Synonyms - * epithelium of thyroid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68783] - * thyroid follicle epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68783] - * wall of thyroid follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68783] + * epithelium of thyroid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68783 ] + * thyroid follicle epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68783 ] + * wall of thyroid follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68783 ] * thryoid epithelium ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thyroid follicle](../../UBERON/05/UBERON_0005305.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012363 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0012463.md b/md/UBERON/63/UBERON_0012463.md index 90329ca5da..13524633f6 100644 --- a/md/UBERON/63/UBERON_0012463.md +++ b/md/UBERON/63/UBERON_0012463.md @@ -7,7 +7,7 @@ ## Synonyms - * cloacal chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000330] + * cloacal chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000330 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0013463.md b/md/UBERON/63/UBERON_0013463.md index da1ee51577..3dd3ed3742 100644 --- a/md/UBERON/63/UBERON_0013463.md +++ b/md/UBERON/63/UBERON_0013463.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013463 * *Label* = temporal fossa - * *Definition* = The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_fossa] + * *Definition* = The temporal fossa is a shallow depression on the side of the skull bounded by the temporal lines and terminating below the level of the zygomatic arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_fossa ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:75307 * SCTID:137157009 - * UMLS:C0230010 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Fossa] + * UMLS:C0230010 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Fossa ] * Wikipedia:Temporal_fossa * http://upload.wikimedia.org/wikipedia/commons/b/bd/Fossatemporalis.PNG * ncithesaurus:Temporal_Fossa @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0013763.md b/md/UBERON/63/UBERON_0013763.md index 533ef858e7..adddc556f5 100644 --- a/md/UBERON/63/UBERON_0013763.md +++ b/md/UBERON/63/UBERON_0013763.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sensory epithelium](../../UBERON/34/UBERON_0006934.md) and [reticular lamina of epithelium](../../UBERON/67/UBERON_0001967.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0014463.md b/md/UBERON/63/UBERON_0014463.md index 3b7906312b..594ae9c5ef 100644 --- a/md/UBERON/63/UBERON_0014463.md +++ b/md/UBERON/63/UBERON_0014463.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014463 * *Label* = cardiac ganglion - * *Definition* = Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-683-40008-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003685] + * *Definition* = Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-683-40008-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003685 ] ## Synonyms - * Wrisberg ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003685] + * Wrisberg ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003685 ] * cardiac ganglion of Wrisberg - * ganglia cardiaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * ganglion of Wrisberg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77582] - * cardiac ganglia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ganglia cardiaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * ganglion of Wrisberg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77582 ] + * cardiac ganglia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -25,11 +25,11 @@ * [parasympathetic ganglion](../../UBERON/08/UBERON_0001808.md) * [part_of](../../BFO/50/BFO_0000050.md) some [parasympathetic nervous system](../../UBERON/11/UBERON_0000011.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cardiac nerve plexus](../../UBERON/08/UBERON_0002008.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cardiac nerve plexus](../../UBERON/08/UBERON_0002008.md) and [parasympathetic ganglion](../../UBERON/08/UBERON_0001808.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery[http://medical-dictionary.thefreedictionary.com/cardiac+ganglion]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014463 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0014663.md b/md/UBERON/63/UBERON_0014663.md index de58b3b2cb..470cd89f7b 100644 --- a/md/UBERON/63/UBERON_0014663.md +++ b/md/UBERON/63/UBERON_0014663.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014663 * *Label* = nucleus recessus lateralis - * *Definition* = The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003662] + * *Definition* = The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003662 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014663 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0014763.md b/md/UBERON/63/UBERON_0014763.md index 5ab82a38c2..803c89ee05 100644 --- a/md/UBERON/63/UBERON_0014763.md +++ b/md/UBERON/63/UBERON_0014763.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014763 * *Label* = fused metatarsal bones 2-4 - * *Definition* = An element formed from the fusion of metapodium bones 2, 3 and 4 in the pedal autopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An element formed from the fusion of metapodium bones 2, 3 and 4 in the pedal autopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * fused central metatarsals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * fused metatarsals 2-4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * cannon bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:51337] - * metatarsal 2+3+4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * fused central metatarsals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * fused metatarsals 2-4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * cannon bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:51337 ] + * metatarsal 2+3+4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [metatarsal bone of digit 2](../../UBERON/51/UBERON_0003651.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metatarsal bone of digit 3](../../UBERON/52/UBERON_0003652.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metatarsal bone of digit 4](../../UBERON/53/UBERON_0003653.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The cannon bone of the 3-toed jerboa (jaculus jaculus) is the postnatal fusion of the 3 central metatarsals, which are distinct ossified elements prenatally * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_51337 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014763 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0014863.md b/md/UBERON/63/UBERON_0014863.md index 588e420140..f224489926 100644 --- a/md/UBERON/63/UBERON_0014863.md +++ b/md/UBERON/63/UBERON_0014863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014863 * *Label* = veliger stage - * *Definition* = The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Veliger] + * *Definition* = The characteristic larval stage of the gastropod, bivalve and scaphopod taxonomic classes. It is produced following either the embryonic or trochophore larval stage of development [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Veliger ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014863 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_0015063.md b/md/UBERON/63/UBERON_0015063.md index 1c5a73f476..82e8199594 100644 --- a/md/UBERON/63/UBERON_0015063.md +++ b/md/UBERON/63/UBERON_0015063.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endochondral element](../../UBERON/63/UBERON_0010363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [autopod region](../../UBERON/70/UBERON_0002470.md) ## Other Logical Axioms @@ -29,8 +29,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015063 + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2000363.md b/md/UBERON/63/UBERON_2000363.md index a0bded4526..a47a7f3550 100644 --- a/md/UBERON/63/UBERON_2000363.md +++ b/md/UBERON/63/UBERON_2000363.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000363 * *Label* = hypobranchial bone - * *Definition* = Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2000463.md b/md/UBERON/63/UBERON_2000463.md index 99eab96233..623c141233 100644 --- a/md/UBERON/63/UBERON_2000463.md +++ b/md/UBERON/63/UBERON_2000463.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011145 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_2000663.md b/md/UBERON/63/UBERON_2000663.md index 790fab4b28..a53cc2577a 100644 --- a/md/UBERON/63/UBERON_2000663.md +++ b/md/UBERON/63/UBERON_2000663.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000663 * *Label* = extrascapula - * *Definition* = Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = When it is present, the paired series of extrascapular bones may include one pair or two pairs or two pairs plus a median one. The most lateral is named lateral extrascapula and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur. The medial and median extrascapulars carry the extrascapular or supratemporal canal. ## Synonyms - * extrascapular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000663] - * extrascapular bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000663] - * scale bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000663] - * supratemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000663] - * tabular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Harrington_1955[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Weitzman_1962] + * extrascapular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000663 ] + * extrascapular bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000663 ] + * scale bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000663 ] + * supratemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000663 ] + * tabular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Harrington_1955, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Weitzman_1962 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2001413 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2000963.md b/md/UBERON/63/UBERON_2000963.md index e98b739a2f..decc45448d 100644 --- a/md/UBERON/63/UBERON_2000963.md +++ b/md/UBERON/63/UBERON_2000963.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000963[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000963, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/63/UBERON_2001063.md b/md/UBERON/63/UBERON_2001063.md index eb933b996e..8249660465 100644 --- a/md/UBERON/63/UBERON_2001063.md +++ b/md/UBERON/63/UBERON_2001063.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001163.md b/md/UBERON/63/UBERON_2001163.md index 09ad963460..abb53f0dd7 100644 --- a/md/UBERON/63/UBERON_2001163.md +++ b/md/UBERON/63/UBERON_2001163.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001263.md b/md/UBERON/63/UBERON_2001263.md index a0c253ec59..58eee88808 100644 --- a/md/UBERON/63/UBERON_2001263.md +++ b/md/UBERON/63/UBERON_2001263.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001263 * *Label* = ovarian follicle stage I - * *Definition* = Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * previtillogenic ovarian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001263] + * previtillogenic ovarian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001263 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001363.md b/md/UBERON/63/UBERON_2001363.md index dc685ccd7a..67713fdf7b 100644 --- a/md/UBERON/63/UBERON_2001363.md +++ b/md/UBERON/63/UBERON_2001363.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001363 * *Label* = neural complex - * *Definition* = Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian supraneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001363] + * Weberian supraneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001363 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2001398 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001463.md b/md/UBERON/63/UBERON_2001463.md index b0da0ed891..7ea1faacb7 100644 --- a/md/UBERON/63/UBERON_2001463.md +++ b/md/UBERON/63/UBERON_2001463.md @@ -6,8 +6,8 @@ ## Synonyms - * stripe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001463] - * stripes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001463[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * stripe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001463 ] + * stripes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001463, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001563.md b/md/UBERON/63/UBERON_2001563.md index 0e0e942699..fd260baaa0 100644 --- a/md/UBERON/63/UBERON_2001563.md +++ b/md/UBERON/63/UBERON_2001563.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001663.md b/md/UBERON/63/UBERON_2001663.md index 767c1c575b..b8cb5dc63d 100644 --- a/md/UBERON/63/UBERON_2001663.md +++ b/md/UBERON/63/UBERON_2001663.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001663 * *Label* = basibranchial 4 tooth - * *Definition* = Tooth that is attached to the basibranchial 4 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the basibranchial 4 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001763.md b/md/UBERON/63/UBERON_2001763.md index 7381475dc4..6a0a3b068d 100644 --- a/md/UBERON/63/UBERON_2001763.md +++ b/md/UBERON/63/UBERON_2001763.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001763 * *Label* = pectoral fin lepidotrichium 3 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001763] + * pectoral fin ray 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001763 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001863.md b/md/UBERON/63/UBERON_2001863.md index f6a3629384..bd15d607d7 100644 --- a/md/UBERON/63/UBERON_2001863.md +++ b/md/UBERON/63/UBERON_2001863.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001863 * *Label* = inter-hypobranchial 3 joint - * *Definition* = Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2001963.md b/md/UBERON/63/UBERON_2001963.md index b8be9b8ad0..8da63a7c75 100644 --- a/md/UBERON/63/UBERON_2001963.md +++ b/md/UBERON/63/UBERON_2001963.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001963 * *Label* = hypobranchial 2 bone distal cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * hypobranchial 2 bone lateral cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001963] - * hypobranchial 2 bone posterior cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001963] + * hypobranchial 2 bone lateral cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001963 ] + * hypobranchial 2 bone posterior cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001963 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2002063.md b/md/UBERON/63/UBERON_2002063.md index 41980d6f82..f2d39ebd3a 100644 --- a/md/UBERON/63/UBERON_2002063.md +++ b/md/UBERON/63/UBERON_2002063.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002063 * *Label* = nuchal plate series - * *Definition* = Anatomical cluster that consists of more than one type of nuchal plate in an individual. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of more than one type of nuchal plate in an individual. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2002163.md b/md/UBERON/63/UBERON_2002163.md index 9f3b1b825a..0f86fbfb4a 100644 --- a/md/UBERON/63/UBERON_2002163.md +++ b/md/UBERON/63/UBERON_2002163.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002163 * *Label* = ural vertebra 1 - * *Definition* = Ural vertebra that is located directly posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 1 (polyural terminology). Ural vertebra 1 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Ural vertebra that is located directly posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 1 (polyural terminology). Ural vertebra 1 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Ural vertebrae 1 may be defined also as the first ural vertebrae bearing hypurals 1 and 2 (diural terminology). ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_2002263.md b/md/UBERON/63/UBERON_2002263.md index 1bf8108b21..76911746d2 100644 --- a/md/UBERON/63/UBERON_2002263.md +++ b/md/UBERON/63/UBERON_2002263.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3000263.md b/md/UBERON/63/UBERON_3000263.md index 1474a257f4..8beb1f1fb7 100644 --- a/md/UBERON/63/UBERON_3000263.md +++ b/md/UBERON/63/UBERON_3000263.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000263 * *Label* = lamina precerebralis - * *Definition* = Posterior face of septum nasi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior face of septum nasi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3000363.md b/md/UBERON/63/UBERON_3000363.md index 6244720bbc..b9fc760eb9 100644 --- a/md/UBERON/63/UBERON_3000363.md +++ b/md/UBERON/63/UBERON_3000363.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3000563.md b/md/UBERON/63/UBERON_3000563.md index af07778c9e..035a81b88e 100644 --- a/md/UBERON/63/UBERON_3000563.md +++ b/md/UBERON/63/UBERON_3000563.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3000663.md b/md/UBERON/63/UBERON_3000663.md index 76e9c1ecd0..7ba5ddf61a 100644 --- a/md/UBERON/63/UBERON_3000663.md +++ b/md/UBERON/63/UBERON_3000663.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3000763.md b/md/UBERON/63/UBERON_3000763.md index ce683a3413..80631c30b1 100644 --- a/md/UBERON/63/UBERON_3000763.md +++ b/md/UBERON/63/UBERON_3000763.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000763 * *Label* = epicoracoid bridge - * *Definition* = A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * procoracoid bridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000763] + * procoracoid bridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000763 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3010163.md b/md/UBERON/63/UBERON_3010163.md index 1507a20084..3a03631835 100644 --- a/md/UBERON/63/UBERON_3010163.md +++ b/md/UBERON/63/UBERON_3010163.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3010463.md b/md/UBERON/63/UBERON_3010463.md index 5d493073dd..d8bce9b2ad 100644 --- a/md/UBERON/63/UBERON_3010463.md +++ b/md/UBERON/63/UBERON_3010463.md @@ -6,7 +6,7 @@ ## Synonyms - * animal ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010463] + * animal ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010463 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_3010563.md b/md/UBERON/63/UBERON_3010563.md index fd5b95d0b8..b0e616f43b 100644 --- a/md/UBERON/63/UBERON_3010563.md +++ b/md/UBERON/63/UBERON_3010563.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_4000163.md b/md/UBERON/63/UBERON_4000163.md index c529c474e1..688232ed63 100644 --- a/md/UBERON/63/UBERON_4000163.md +++ b/md/UBERON/63/UBERON_4000163.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000163 * *Label* = anal fin - * *Definition* = Median fin that is located posterior to the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Median fin that is located posterior to the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * nageoire anale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * proctopt?re [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000136] - * proctopt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PAPUB:0000142[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] + * nageoire anale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * proctopt?re [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000136 ] + * proctopt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PAPUB:0000142, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/63/UBERON_4200063.md b/md/UBERON/63/UBERON_4200063.md index a4e52c6723..48ad1511c1 100644 --- a/md/UBERON/63/UBERON_4200063.md +++ b/md/UBERON/63/UBERON_4200063.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0000064.md b/md/UBERON/64/UBERON_0000064.md index 85e9a6935b..435efdab37 100644 --- a/md/UBERON/64/UBERON_0000064.md +++ b/md/UBERON/64/UBERON_0000064.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000064 * *Label* = organ part - * *Definition* = anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:82472] + * *Definition* = anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:82472 ] ## Synonyms * cardinal organ part - * regional part of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_16] + * regional part of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_16 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0000164.md b/md/UBERON/64/UBERON_0000164.md index c9d4b31b5c..61c350339a 100644 --- a/md/UBERON/64/UBERON_0000164.md +++ b/md/UBERON/64/UBERON_0000164.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000164 * *Label* = primitive urogenital sinus - * *Definition* = Ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Definitive_urogenital_sinus] + * *Definition* = Ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Definitive_urogenital_sinus ] * *Comment* = Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP] ## Synonyms - * UGS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010116] - * fetal UGS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] - * sinus urogenitalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urogenital sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010116] + * UGS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010116 ] + * fetal UGS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] + * sinus urogenitalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urogenital sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010116 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:17211 * EMAPA:17379 * SCTID:50961009 - * UMLS:C0231057 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urogenital_Sinus] + * UMLS:C0231057 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urogenital_Sinus ] * VHOG:0000414 * Wikipedia:Definitive_urogenital_sinus * http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral part of the cloaca after its separation from the rectum, giving rise to the lower part of the bladder in both sexes, to the prostatic portion of the male urethra, and to the urethra and vestibule in the female. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals the lowly monotremes still have a cloaca. Higher types have done away with this structure and have a separate anal outlet for the rectum. The monotreme cloaca shows the initiation of this subdivision. The cloaca has such includes only the distal part, roughly comparable to the proctodeum. The more proximal part is divided into (1) a large dorsal passage into which the intestine opens, the coprodeum, and (2) a ventral portion, the urodeum with which the bladder connects. (...) the development of the placental mammals recapitulates in many respects the phylogenetic story. In the sexually indifferent stage of placental mammal there is a cloaca. While the indifferent stage still persists, a septum develops, and extends out to the closing membrane. This divides the cloaca into two chambers: a coprodeum continuous with the gut above, and a urodeum or urogenital sinus below.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0000364.md b/md/UBERON/64/UBERON_0000364.md index fe22a81dc1..106c21c0ad 100644 --- a/md/UBERON/64/UBERON_0000364.md +++ b/md/UBERON/64/UBERON_0000364.md @@ -6,9 +6,9 @@ ## Synonyms - * Rootlets [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76787] - * Rootlets set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76787] - * fila radicularia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76787[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Rootlets [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76787 ] + * Rootlets set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76787 ] + * fila radicularia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76787, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:76787 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000364 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_0000464.md b/md/UBERON/64/UBERON_0000464.md index bb86f8ae12..f77d96beba 100644 --- a/md/UBERON/64/UBERON_0000464.md +++ b/md/UBERON/64/UBERON_0000464.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000464 * *Label* = anatomical space - * *Definition* = Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -23,7 +23,7 @@ * HAO:0000005 * TAO:0001668 * TGMA:0001825 - * UMLS:C0524461 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumen_Space] + * UMLS:C0524461 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumen_Space ] * VHOG:0001728 * XAO:0003190 * ZFA:0001643 @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0000964.md b/md/UBERON/64/UBERON_0000964.md index 562249a521..7181ee28c0 100644 --- a/md/UBERON/64/UBERON_0000964.md +++ b/md/UBERON/64/UBERON_0000964.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000964 * *Label* = cornea - * *Definition* = transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cornea] + * *Definition* = transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cornea ] * *Comment* = Taxon notes: Compared to terrestial animals, the cornea [of zebrafish] is relatively flat. It consists of nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowmans membrane in mammals ## Synonyms - * cornea of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061303] + * cornea of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061303 ] * tunica cornea ## Cross-references @@ -28,7 +28,7 @@ * OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA * SCTID:181162001 * TAO:0000640 - * UMLS:C0010031 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cornea] + * UMLS:C0010031 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cornea ] * VHOG:0000164 * Wikipedia:Cornea * XAO:0000180 @@ -65,8 +65,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = corneal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001064.md b/md/UBERON/64/UBERON_0001064.md index 18e5c8c416..cec442eb48 100644 --- a/md/UBERON/64/UBERON_0001064.md +++ b/md/UBERON/64/UBERON_0001064.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001064 * *Label* = ventral pancreatic duct - * *Definition* = a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_duct] + * *Definition* = a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_duct ] * *Comment* = Development notes: Upon reaching its final destination, the ventral pancreatic bud fuses with the much larger dorsal pancreatic bud. At this point of fusion, the main ducts of the ventral and dorsal pancreatic buds fuse, forming the duct of Wirsung, the main pancreatic duct.[WP] ## Synonyms - * chief pancreatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16003] - * duct of Wirsung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreatic_duct] - * main pancreatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000126] - * pancreatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.734.667] - * canal of Wirsung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002362] + * chief pancreatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16003 ] + * duct of Wirsung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreatic_duct ] + * main pancreatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000126 ] + * pancreatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.734.667 ] + * canal of Wirsung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002362 ] * ductus pancreatis ventralis - * hepaticopancreatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002362] + * hepaticopancreatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002362 ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A03.734.667 * RETIRED_EHDAA2:0002177 * SCTID:245385001 - * UMLS:C0030288 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Duct] + * UMLS:C0030288 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Duct ] * VHOG:0000256 * Wikipedia:Pancreatic_duct * http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These data show that ducts within the zebrafish pancreas originally arise in situ from isolated progenitor cells rather than arising from reiterative branching of the pancreatic epithelium. This process of pancreatic duct formation in zebrafish may be analogous to the mechanism of duct formation in the mammalian mammary and salivary glands. (...) A related mechanism of duct formation has also been proposed to occur within the mammalian pancreatic epithelium.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005627 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001164.md b/md/UBERON/64/UBERON_0001164.md index 37e201ec59..a085e7f0d1 100644 --- a/md/UBERON/64/UBERON_0001164.md +++ b/md/UBERON/64/UBERON_0001164.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001164 * *Label* = greater curvature of stomach - * *Definition* = The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_curvature_of_stomach] + * *Definition* = The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_curvature_of_stomach ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:14574 * MA:0001615 * SCTID:362134002 - * UMLS:C0227223 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Greater_Curvature] + * UMLS:C0227223 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Greater_Curvature ] * Wikipedia:Greater_curvature_of_stomach * galen:GreaterCurvatureOfStomach * http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001264.md b/md/UBERON/64/UBERON_0001264.md index 8553b41989..12360832a0 100644 --- a/md/UBERON/64/UBERON_0001264.md +++ b/md/UBERON/64/UBERON_0001264.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001264 * *Label* = pancreas - * *Definition* = An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 12% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0031016[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16417468[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pancreas] + * *Definition* = An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 12% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0031016, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16417468, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pancreas ] * *Comment* = taxon notes: As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52) [PMID:20959416]. The zebrafish does not have a discrete pancreas. Exocrine pancreatic tissue can be found scattered along the intestinal tract (Figures 16 and 17 ). The acinar structure of the exocrine pancreas is very similar to that of mammals and comprises cells with a very dark, basophilic cytoplasm ## Synonyms @@ -29,7 +29,7 @@ * OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA * SCTID:181277001 * TAO:0000140 - * UMLS:C0030274 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreas] + * UMLS:C0030274 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreas ] * VHOG:0000050 * Wikipedia:Pancreas * XAO:0000136 @@ -68,8 +68,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the hagfish and lampreys (our most primitive vertebrate species of today), the first sign of 'a new organ' is found as collections of endocrine cells around the area of the bile duct connection with the duodenum. These endocrine organs are composed of 99% beta cells and 1% somatostatin-producing delta cells. Compared to the more primitive protochordates (e.g. amphioxus), this represents a stage where all previously scattered insulin-producing cells of the intestinal tissue have now quantitatively migrated to found a new organ involved in sensing blood glucose rather than gut glucose. Only later in evolution, the beta cells are joined by exocrine tissue and alpha cells (exemplified by the rat-, rabbit- and elephant-fishes). Finally, from sharks and onwards in evolution, we have the islet PP-cell entering to complete the pancreas.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pancreatic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001364.md b/md/UBERON/64/UBERON_0001364.md index 7a7f04c193..84ea421d76 100644 --- a/md/UBERON/64/UBERON_0001364.md +++ b/md/UBERON/64/UBERON_0001364.md @@ -7,7 +7,7 @@ ## Synonyms * radial - * radialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21431[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * radialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21431, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * radials ## Cross-references @@ -30,9 +30,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:21431 * *[consider](../../er/oboInOwl#consider.md)* = ZFA:0000271 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001364 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_0001464.md b/md/UBERON/64/UBERON_0001464.md index 26ce8ef43d..fbfd0a41cc 100644 --- a/md/UBERON/64/UBERON_0001464.md +++ b/md/UBERON/64/UBERON_0001464.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001464 * *Label* = hip - * *Definition* = The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip] + * *Definition* = The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip ] * *Comment* = AO notes. See notes for shoulder. in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint ## Synonyms - * hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24964] - * regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24964] - * coxa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24964 ] + * regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24964 ] + * coxa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A01.378.610.400 * OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA * SCTID:302543008 - * UMLS:C0019552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hip] + * UMLS:C0019552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hip ] * VHOG:0000346 * Wikipedia:Hip * galen:Hip @@ -44,7 +44,7 @@ * [organism subdivision](../../UBERON/75/UBERON_0000475.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Equivalencies @@ -57,8 +57,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = coxal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001564.md b/md/UBERON/64/UBERON_0001564.md index 2194120074..14823b88e4 100644 --- a/md/UBERON/64/UBERON_0001564.md +++ b/md/UBERON/64/UBERON_0001564.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001564 * *Label* = mylohyoid muscle - * *Definition* = The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle] + * *Definition* = The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle ] * *Comment* = mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3 ## Synonyms - * musculus mylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle] - * mylohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle] - * mylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle] - * mylohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle] - * musculus mylohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mylohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus mylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle ] + * mylohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle ] + * mylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle ] + * mylohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle ] + * musculus mylohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mylohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46320 * MA:0002344 * SCTID:244827005 - * UMLS:C0224159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mylohyoid] + * UMLS:C0224159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mylohyoid ] * Wikipedia:Mylohyoid_muscle * http://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG * ncithesaurus:Mylohyoid @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001664.md b/md/UBERON/64/UBERON_0001664.md index 8b792ada75..fb36a95103 100644 --- a/md/UBERON/64/UBERON_0001664.md +++ b/md/UBERON/64/UBERON_0001664.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001664 * *Label* = inferior cerebral vein - * *Definition* = The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cerebral_veins] + * *Definition* = The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cerebral_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001764.md b/md/UBERON/64/UBERON_0001764.md index 7a3dfdaa37..c0e817d20d 100644 --- a/md/UBERON/64/UBERON_0001764.md +++ b/md/UBERON/64/UBERON_0001764.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001764 * *Label* = maxillary sinus - * *Definition* = One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.531.621.578[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_sinus] + * *Definition* = One of the paired paranasal sinuses, located in the body of the maxilla, communicating with the middle meatus of the nasal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.531.621.578, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_sinus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * antrum of Highmore - * highmore antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.531.621.578] - * maxillary antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.531.621.578] - * sinus maxilliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * highmore antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.531.621.578 ] + * maxillary antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.531.621.578 ] + * sinus maxilliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A04.531.621.578 * OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA * SCTID:181204007 - * UMLS:C0024957 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Maxillary_Sinus] + * UMLS:C0024957 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Maxillary_Sinus ] * Wikipedia:Maxillary_sinus * http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray1199.png/200px-Gray1199.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001864.md b/md/UBERON/64/UBERON_0001864.md index b4d2b29365..4685e66b9a 100644 --- a/md/UBERON/64/UBERON_0001864.md +++ b/md/UBERON/64/UBERON_0001864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001864 * *Label* = scala tympani - * *Definition* = Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scala_tympani] + * *Definition* = Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scala_tympani ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0001964.md b/md/UBERON/64/UBERON_0001964.md index b96884816a..74ed4bf82a 100644 --- a/md/UBERON/64/UBERON_0001964.md +++ b/md/UBERON/64/UBERON_0001964.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001964 * *Label* = least splanchnic nerve - * *Definition* = Thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] + * *Definition* = Thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoracic_splanchnic_nerves#cite_note-4 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * least thoracic splanchnic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283] - * lowest splanchnic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283] - * nervus splanchnicus imus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus renalis nervus splanchnici minoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus renalis nervus splanchnici minoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * renal branch of lesser splanchnic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283] - * renal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6283] + * least thoracic splanchnic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283 ] + * lowest splanchnic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283 ] + * nervus splanchnicus imus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus renalis nervus splanchnici minoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus renalis nervus splanchnici minoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * renal branch of lesser splanchnic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283 ] + * renal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6283 ] * thoracic splanchnic nerve ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002064.md b/md/UBERON/64/UBERON_0002064.md index 1e2941ff70..59ac4e04f7 100644 --- a/md/UBERON/64/UBERON_0002064.md +++ b/md/UBERON/64/UBERON_0002064.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002064 * *Label* = common cardinal vein - * *Definition* = Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004388[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_cardinal_veins] + * *Definition* = Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004388, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_cardinal_veins ] * *Comment* = Taxon notes: Paired in gnathostomes; with only a vestige of the right duct in the adult hagfish (21) and the left duct atrophying at metamorphosis in the lamprey (22)[PMID:20959416, S1] ## Synonyms * Cuvierian duct * duct of Cuvier - * future coronary sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16356] + * future coronary sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16356 ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:70308 * SCTID:308783008 * TAO:0000186 - * UMLS:C0231083 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Cardinal_Vein] + * UMLS:C0231083 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Cardinal_Vein ] * VHOG:0000112 * Wikipedia:Common_cardinal_veins * XAO:0000373 @@ -54,8 +54,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of cardinal system (TAO:0000096)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002164.md b/md/UBERON/64/UBERON_0002164.md index 42ea37adda..cbc5939377 100644 --- a/md/UBERON/64/UBERON_0002164.md +++ b/md/UBERON/64/UBERON_0002164.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002164 * *Label* = tectobulbar tract - * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0034429] + * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0034429 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * tecto-bulbar tract - * tractus tectobulbaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:811[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus tectobulbaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:811, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:tb * FMA:72645 * NIF_GrossAnatomy:birnlex_750 - * NeuroNames:811 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_750] + * NeuroNames:811 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_750 ] * SCTID:369265000 * TAO:0000446 - * UMLS:C0152378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_750] + * UMLS:C0152378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_750 ] * ZFA:0000446 ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002264.md b/md/UBERON/64/UBERON_0002264.md index 565d1132fe..43e2370cbc 100644 --- a/md/UBERON/64/UBERON_0002264.md +++ b/md/UBERON/64/UBERON_0002264.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002264 * *Label* = olfactory bulb - * *Definition* = A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000961[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_bulb] + * *Definition* = A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000961, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_bulb ] * *Comment* = Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. The distinction may only make sense in tetrapods with a vomeronasal organ (olfactory nerves terminate in OB in fishes and in main OB in tetrapods - Butler and Hodos). Development notes: the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP). ## Synonyms - * bulbus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_bulb] - * bulbus olfactorius (Morgagni) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:279[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bulbus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_bulb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olfactory forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:olf] - * olfactory lobe (Barr & Kiernan) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:279] - * olfactory lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000402] + * bulbus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_bulb ] + * bulbus olfactorius (Morgagni) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:279, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bulbus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_bulb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olfactory forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:olf ] + * olfactory lobe (Barr & Kiernan) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:279 ] + * olfactory lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000402 ] ## Cross-references @@ -34,11 +34,11 @@ * MA:0000194 * MESH:A08.186.211.577.699.573 * NIF_GrossAnatomy:birnlex_1137 - * NeuroNames:279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1137] + * NeuroNames:279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1137 ] * SCTID:279394006 * TAO:0000402 - * UMLS:C0028936 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1137] - * UMLS:C0028936 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Bulb] + * UMLS:C0028936 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1137 ] + * UMLS:C0028936 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Bulb ] * VHOG:0000033 * Wikipedia:Olfactory_bulb * XAO:0004180 @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the forebrain in which the olfactory nerves end and the olfactory tracts originate. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002364.md b/md/UBERON/64/UBERON_0002364.md index f9f2a4263e..4a0b500752 100644 --- a/md/UBERON/64/UBERON_0002364.md +++ b/md/UBERON/64/UBERON_0002364.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002364 * *Label* = tympanic membrane - * *Definition* = A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_membrane] + * *Definition* = A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_membrane ] * *Comment* = most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint. Development notes: The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum[PMID:11237469] ## Synonyms @@ -14,8 +14,8 @@ * lateral wall of tympanic cavity * membranous wall of tympanic cavity * myrinx - * paries membranaceus cavi tympani [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9595[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tympanum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_membrane] + * paries membranaceus cavi tympani [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9595, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tympanum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_membrane ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0000257 * MESH:A09.246.397.873 * SCTID:181180005 - * UMLS:C0041445 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tympanic_Membrane] + * UMLS:C0041445 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tympanic_Membrane ] * VHOG:0001146 * Wikipedia:Tympanic_membrane * XAO:0000212 @@ -44,8 +44,8 @@ * [has_part](../../BFO/51/BFO_0000051.md) some [inner epithelial layer of tympanic membrane](../../UBERON/42/UBERON_0005042.md) * [has_part](../../BFO/51/BFO_0000051.md) some [outer epithelial layer of tympanic membrane](../../UBERON/69/UBERON_0010069.md) * [has_part](../../BFO/51/BFO_0000051.md) some [intermediate layer of tympanic membrane](../../UBERON/70/UBERON_0010070.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [external acoustic meatus](../../UBERON/52/UBERON_0001352.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [external ear](../../UBERON/91/UBERON_0001691.md) * [develops from](../../RO/02/RO_0002202.md) some [pharyngeal membrane of 1st arch](../../UBERON/13/UBERON_0009213.md) * [adjacent to](../../RO/20/RO_0002220.md) some [tympanic cavity](../../UBERON/14/UBERON_0004114.md) @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The thin membrane which closes externally the cavity of the middle ear and is deeply sited at the bottom of the external auditory meatus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In particular, a tympanic membrane was not present in the earliest tetrapods (...). An ear utilizing a tympanic membrane evolved independently at least three times in tetrapods: (1) in the lineage that leads to anurans (frogs), (2) in the line of evolution to turtles and diapsids, and (3) in the late synapsid lineage that gave rise to mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002464.md b/md/UBERON/64/UBERON_0002464.md index 47fcbea708..b9bc60532c 100644 --- a/md/UBERON/64/UBERON_0002464.md +++ b/md/UBERON/64/UBERON_0002464.md @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of neural tree organ which consists of nerve fiber bundles aggregated to form a cable-like structure that branches off to different nerves; together with all nerves of the same tree consproperty_value external_definitiona neural tree. Example: trunk of cranial nerve, trunk of spinal nerve, trunk of peripheral nerve[FMA:5913]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002564.md b/md/UBERON/64/UBERON_0002564.md index 16ddd1c1f2..62007ff023 100644 --- a/md/UBERON/64/UBERON_0002564.md +++ b/md/UBERON/64/UBERON_0002564.md @@ -6,17 +6,17 @@ ## Synonyms - * gyrus orbitalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:92[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus orbitalis longitudinalis externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:92[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus orbitalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:92, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus orbitalis longitudinalis externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:92, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:LOrG * FMA:62418 * NIF_GrossAnatomy:birnlex_1036 - * NeuroNames:92 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1036] + * NeuroNames:92 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1036 ] * SCTID:279195001 - * UMLS:C0262268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1036] + * UMLS:C0262268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1036 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002664.md b/md/UBERON/64/UBERON_0002664.md index c9b1277271..205210be9e 100644 --- a/md/UBERON/64/UBERON_0002664.md +++ b/md/UBERON/64/UBERON_0002664.md @@ -6,17 +6,17 @@ ## Synonyms - * intercalated mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62346] - * intermediate mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62346] + * intercalated mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62346 ] + * intermediate mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62346 ] * lateral mammillary nucleus (gagel) - * lateral subdivision of medial mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62346] - * medial mammillary nucleus, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62346] - * MML [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1314[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral part of the medial mammillary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:416] - * medial mammillary nucleus lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ML] - * nucleus corporis mamillaris medialis, pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:416[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus intercalatus corporis mammillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:416[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus intermedius corpus mamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:416[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral subdivision of medial mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62346 ] + * medial mammillary nucleus, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62346 ] + * MML [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1314, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral part of the medial mammillary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:416 ] + * medial mammillary nucleus lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ML ] + * nucleus corporis mamillaris medialis, pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:416, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus intercalatus corporis mammillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:416, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus intermedius corpus mamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:416, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,8 +24,8 @@ * BAMS:MML * FMA:62346 * NIF_GrossAnatomy:birnlex_1314 - * NeuroNames:416 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1314] - * UMLS:C0694606 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1314] + * NeuroNames:416 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1314 ] + * UMLS:C0694606 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1314 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002764.md b/md/UBERON/64/UBERON_0002764.md index 4246201559..ca71dbd7f1 100644 --- a/md/UBERON/64/UBERON_0002764.md +++ b/md/UBERON/64/UBERON_0002764.md @@ -6,17 +6,17 @@ ## Synonyms - * inferior part of precentral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83764] - * sulcus praecentralis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1627] - * sulcus precentralis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1627] + * inferior part of precentral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83764 ] + * sulcus praecentralis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1627 ] + * sulcus precentralis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1627 ] ## Cross-references * BAMS:iprs * FMA:83764 * NIF_GrossAnatomy:birnlex_1627 - * NeuroNames:72 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1627] - * UMLS:C0262257 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1627] + * NeuroNames:72 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1627 ] + * UMLS:C0262257 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1627 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002864.md b/md/UBERON/64/UBERON_0002864.md index 97c576ed1b..06064a4f53 100644 --- a/md/UBERON/64/UBERON_0002864.md +++ b/md/UBERON/64/UBERON_0002864.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002864 * *Label* = accessory cuneate nucleus - * *Definition* = The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_cuneate_nucleus] + * *Definition* = The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_cuneate_nucleus ] ## Synonyms - * external cuneate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72603] - * lateral cuneate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72603] - * nucleus of corpus restiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72603] - * ACu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2634[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * external cuneate nucleus (Monakow, Blumenau 1891) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:768] - * nucleus Monakow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:768[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cuneatis externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:768[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cuneatus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_cuneate_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus cuneatus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:768[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus funiculi cuneatus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:768[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * external cuneate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72603 ] + * lateral cuneate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72603 ] + * nucleus of corpus restiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72603 ] + * ACu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2634, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * external cuneate nucleus (Monakow, Blumenau 1891) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:768 ] + * nucleus Monakow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:768, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cuneatis externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:768, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cuneatus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_cuneate_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus cuneatus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:768, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus funiculi cuneatus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:768, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * EV:0100285 * FMA:72603 * NIF_GrossAnatomy:birnlex_2634 - * NeuroNames:768 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2634] + * NeuroNames:768 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2634 ] * SCTID:15575006 - * UMLS:C0152397 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2634] + * UMLS:C0152397 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2634 ] * Wikipedia:Accessory_cuneate_nucleus * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0002964.md b/md/UBERON/64/UBERON_0002964.md index bc8df7af09..f3c5a8817f 100644 --- a/md/UBERON/64/UBERON_0002964.md +++ b/md/UBERON/64/UBERON_0002964.md @@ -6,18 +6,18 @@ ## Synonyms - * dorsal nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * dorsal oculomotor cell column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62442] - * D3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_793[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus nervi oculomotorii, pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:493[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * dorsal oculomotor cell column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62442 ] + * D3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_793, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus nervi oculomotorii, pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:493, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:D3 * FMA:62442 * NIF_GrossAnatomy:birnlex_793 - * NeuroNames:493 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_793] - * UMLS:C0175377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_793] + * NeuroNames:493 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_793 ] + * UMLS:C0175377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_793 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003064.md b/md/UBERON/64/UBERON_0003064.md index 51adcf41ba..8475052f47 100644 --- a/md/UBERON/64/UBERON_0003064.md +++ b/md/UBERON/64/UBERON_0003064.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003064 * *Label* = intermediate mesoderm - * *Definition* = The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:curators[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_mesoderm] + * *Definition* = The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:curators, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_mesoderm ] * *Comment* = note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). ## Synonyms * IM - * intermediate mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] - * intermediate plate mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * mesenchyma intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_mesoderm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intermediate mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] + * intermediate plate mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * mesenchyma intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_mesoderm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:16178 * SCTID:361476001 * TAO:0001206 - * UMLS:C1284010 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intermediate_Mesoderm] + * UMLS:C1284010 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intermediate_Mesoderm ] * VHOG:0000087 * Wikipedia:Intermediate_mesoderm * XAO:0000085 @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...)the mesoderm of a developing vertebrate transitionally differentiates into the following sub-types: Chordamesoderm (also known as axial mesoderm) which later on gives rise to notochord in all chordates, Paraxial mesoderm, Intermediate mesoderm, Lateral plate mesoderm (reference 1); The mesoderm is present in Bilateria, therefore they are sometimes called triploblasts. Ectoderm and endoderm are usually organized as epithelial layers, while mesoderm can be epithelial or a compact, three-dimensional tissue.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003164.md b/md/UBERON/64/UBERON_0003164.md index 2b25031bb0..84d07663d1 100644 --- a/md/UBERON/64/UBERON_0003164.md +++ b/md/UBERON/64/UBERON_0003164.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004521 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000212 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003164 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_0003264.md b/md/UBERON/64/UBERON_0003264.md index c98d6fd49e..6493f776fe 100644 --- a/md/UBERON/64/UBERON_0003264.md +++ b/md/UBERON/64/UBERON_0003264.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003264 * *Label* = mesoderm of yolk sac - * *Definition* = A mesoderm that is part of a yolk sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesoderm that is part of a yolk sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ## Synonyms - * yolk sac mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * yolk sac mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesoderm](../../UBERON/26/UBERON_0000926.md) and [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003364.md b/md/UBERON/64/UBERON_0003364.md index ef3099b182..0c48fd37e8 100644 --- a/md/UBERON/64/UBERON_0003364.md +++ b/md/UBERON/64/UBERON_0003364.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003364 * *Label* = epithelium of right lung - * *Definition* = An epithelium that is part of a right lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a right lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003464.md b/md/UBERON/64/UBERON_0003464.md index 426c14415c..9f6c86ebbc 100644 --- a/md/UBERON/64/UBERON_0003464.md +++ b/md/UBERON/64/UBERON_0003464.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003464 * *Label* = hindlimb bone - * *Definition* = A bone that is part of a hindlimb region. Examples: any pes phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of a hindlimb region. Examples: any pes phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc ## Synonyms - * bone of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bone of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EFO:0003842 * GAID:198 * SCTID:361370006 - * UMLS:C0448188 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_of_the_Lower_Extremity] + * UMLS:C0448188 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_of_the_Lower_Extremity ] * ncithesaurus:Bone_of_the_Lower_Extremity ## Subsets @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003564.md b/md/UBERON/64/UBERON_0003564.md index 096d9383fe..37c91de34f 100644 --- a/md/UBERON/64/UBERON_0003564.md +++ b/md/UBERON/64/UBERON_0003564.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003564 * *Label* = diencephalon dura mater - * *Definition* = A dura mater that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * between brain dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * between brain dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dura mater that is part of the diencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003664.md b/md/UBERON/64/UBERON_0003664.md index 1eb3f781ac..6096a270f9 100644 --- a/md/UBERON/64/UBERON_0003664.md +++ b/md/UBERON/64/UBERON_0003664.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003664 * *Label* = manual digit muscle - * *Definition* = A muscle organ that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digit of hand muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000624] - * hand digit muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * digit of hand muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000624 ] + * hand digit muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003864.md b/md/UBERON/64/UBERON_0003864.md index 3124be0b0e..408ad97f81 100644 --- a/md/UBERON/64/UBERON_0003864.md +++ b/md/UBERON/64/UBERON_0003864.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003864 * *Label* = middle phalanx of manus - * *Definition* = A middle phalanx that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001394] + * hand middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001394 ] * middle manual phalanx - * middle phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75817] - * middle phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001394] + * middle phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75817 ] + * middle phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001394 ] * middle phalanx of manual digit ## Cross-references @@ -19,7 +19,7 @@ * MA:0001394 * SCTID:113223004 * SCTID:371230003 - * UMLS:C0223828 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Phalanx_of_the_Hand] + * UMLS:C0223828 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Phalanx_of_the_Hand ] * ncithesaurus:Middle_Phalanx_of_the_Hand ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0003964.md b/md/UBERON/64/UBERON_0003964.md index 40c3900b96..9d038d5291 100644 --- a/md/UBERON/64/UBERON_0003964.md +++ b/md/UBERON/64/UBERON_0003964.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003964 * *Label* = prevertebral ganglion - * *Definition* = Prevertebral ganglia (or collateral ganglia, or preaortic ganglia) are sympathetic ganglia which lie between the sympathetic chain and the organ of supply. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia] + * *Definition* = Prevertebral ganglia (or collateral ganglia, or preaortic ganglia) are sympathetic ganglia which lie between the sympathetic chain and the organ of supply. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia ] ## Synonyms - * collateral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5892] - * previsceral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5892] - * collateral ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * pre-aortic ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * preaortic ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * prevertebral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia] - * prevertebral plexuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * three great gangliated plexuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * collateral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5892 ] + * previsceral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5892 ] + * collateral ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * pre-aortic ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * preaortic ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * prevertebral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia ] + * prevertebral plexuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * three great gangliated plexuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004064.md b/md/UBERON/64/UBERON_0004064.md index c8e2ec2c41..a192a14e18 100644 --- a/md/UBERON/64/UBERON_0004064.md +++ b/md/UBERON/64/UBERON_0004064.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004064 * *Label* = neural tube basal plate - * *Definition* = the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009693[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_plate_(neural_tube)] + * *Definition* = the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009693, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_plate_(neural_tube) ] ## Synonyms * basal plate - * basal plate of neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_plate_(neural_tube)] - * spinal cord basal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009693] + * basal plate of neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_plate_(neural_tube) ] + * spinal cord basal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009693 ] * ventral part of neural tube ## Cross-references @@ -17,7 +17,7 @@ * AAO:0010561 * EFO:0001904 * NeuroNames:1372 - * UMLS:C1511061 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basal_Plate] + * UMLS:C1511061 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basal_Plate ] * Wikipedia:Basal_plate_(neural_tube) * ncithesaurus:Basal_Plate @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004164.md b/md/UBERON/64/UBERON_0004164.md index 159ea82a52..55745b35ea 100644 --- a/md/UBERON/64/UBERON_0004164.md +++ b/md/UBERON/64/UBERON_0004164.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004164 * *Label* = branchiomeric muscle - * *Definition* = A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A jaw muscle that arises from cranial mesenchyme and is innervated by cranial nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * branchiomeric skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0014707] + * branchiomeric skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0014707 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to theproperty_value external_definitionmusculature of fish[GO][GO:0014707]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004264.md b/md/UBERON/64/UBERON_0004264.md index bafadf8e9f..590b192ed2 100644 --- a/md/UBERON/64/UBERON_0004264.md +++ b/md/UBERON/64/UBERON_0004264.md @@ -3,47 +3,47 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004264 * *Label* = lower leg skin - * *Definition* = A zone of skin that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -61,15 +61,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004364.md b/md/UBERON/64/UBERON_0004364.md index 525bba29f8..812410d8de 100644 --- a/md/UBERON/64/UBERON_0004364.md +++ b/md/UBERON/64/UBERON_0004364.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004364 * *Label* = ectoplacental cone - * *Definition* = thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001717[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19829370] + * *Definition* = thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001717, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19829370 ] * *Comment* = Development notes: derivative of the early postimplantation trophoblast, which probably gives rise to the spongiotrophoblast.[PMID:19829370] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004464.md b/md/UBERON/64/UBERON_0004464.md index 225d65732f..49595da63b 100644 --- a/md/UBERON/64/UBERON_0004464.md +++ b/md/UBERON/64/UBERON_0004464.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004464 * *Label* = musculature of thorax - * *Definition* = Any collection of muscles that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = note BTO and FMA do not mean precisely the same thing here ## Synonyms - * muscle group of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71293] - * muscles of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71293] - * musculi thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71293[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of muscles of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71293] - * thoracic musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71293] + * muscle group of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71293 ] + * muscles of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71293 ] + * musculi thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71293, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of muscles of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71293 ] + * thoracic musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71293 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004564.md b/md/UBERON/64/UBERON_0004564.md index 04d50bf191..f17844a625 100644 --- a/md/UBERON/64/UBERON_0004564.md +++ b/md/UBERON/64/UBERON_0004564.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004564 * *Label* = hindlimb digital vein - * *Definition* = A digital vein that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A digital vein that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindlimb digital veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002133] + * hindlimb digital veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002133 ] * vein of pedal digit * vein of toe @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digital vein](../../UBERON/62/UBERON_0004562.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004664.md b/md/UBERON/64/UBERON_0004664.md index 295c4b84b8..e7e3400b9e 100644 --- a/md/UBERON/64/UBERON_0004664.md +++ b/md/UBERON/64/UBERON_0004664.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004664 * *Label* = aorta tunica adventitia - * *Definition* = A tunica adventitia that is part of a aorta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tunica adventitia that is part of a aorta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tunica adventitia of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14283] + * tunica adventitia of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14283 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) and [tunica adventitia of blood vessel](../../UBERON/34/UBERON_0005734.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004764.md b/md/UBERON/64/UBERON_0004764.md index 1940dff556..35f4dae81c 100644 --- a/md/UBERON/64/UBERON_0004764.md +++ b/md/UBERON/64/UBERON_0004764.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004764 * *Label* = intramembranous bone tissue - * *Definition* = Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001957[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intramembranous_ossification] + * *Definition* = Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001957, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intramembranous_ossification ] * *Comment* = note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type (it is under bone tissue and connective tissue; there are no child classes) ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone tissue](../../UBERON/81/UBERON_0002481.md) and [output_of](../../core#output/of/core#output_of.md) some [intramembranous ossification](../../GO/57/GO_0001957.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0004864.md b/md/UBERON/64/UBERON_0004864.md index d4ebf4f8ae..d6829a1f15 100644 --- a/md/UBERON/64/UBERON_0004864.md +++ b/md/UBERON/64/UBERON_0004864.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004864 * *Label* = vasculature of retina - * *Definition* = A vasculature that is part of a retina [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a retina [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * retina vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061298] - * retina vasculature of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061298] - * retinal blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76552] - * retinal blood vessels set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76552] - * retinal vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of blood vessels of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of retinal blood vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76552] - * vasa sanguinea retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76552[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * retina vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061298 ] + * retina vasculature of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061298 ] + * retinal blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76552 ] + * retinal blood vessels set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76552 ] + * retinal vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of blood vessels of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of retinal blood vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76552 ] + * vasa sanguinea retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76552, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [retina](../../UBERON/66/UBERON_0000966.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005064.md b/md/UBERON/64/UBERON_0005064.md index a01d0746b8..4ff0b356ac 100644 --- a/md/UBERON/64/UBERON_0005064.md +++ b/md/UBERON/64/UBERON_0005064.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005064 * *Label* = left ventricular trabecular myocardium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003225] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003225 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) and [trabecular layer of ventricle](../../UBERON/26/UBERON_0004126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005164.md b/md/UBERON/64/UBERON_0005164.md index 645791229a..9d4007bfd0 100644 --- a/md/UBERON/64/UBERON_0005164.md +++ b/md/UBERON/64/UBERON_0005164.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005164 * *Label* = ascending limb of loop of Henle - * *Definition* = the distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011342[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_limb_of_loop_of_Henle] + * *Definition* = the distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011342, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_limb_of_loop_of_Henle ] * *Comment* = TODO: thick/thin check. Also relationship to distal tubule. We need a home for MA:0002634-renal straight tubule ## Synonyms * ascending limb of Henle's loop - * loop of Henle ascending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011342] + * loop of Henle ascending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011342 ] * ascending limb * distal straight tubule @@ -18,7 +18,7 @@ * FMA:17717 * MA:0001676 * SCTID:245434005 - * UMLS:C0227658 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop] + * UMLS:C0227658 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop ] * Wikipedia:Ascending_limb_of_loop_of_Henle * ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005264.md b/md/UBERON/64/UBERON_0005264.md index 7ffbee33ed..f12b7d77c4 100644 --- a/md/UBERON/64/UBERON_0005264.md +++ b/md/UBERON/64/UBERON_0005264.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0000793 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005264 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_0005364.md b/md/UBERON/64/UBERON_0005364.md index 112e49f04e..2039e99176 100644 --- a/md/UBERON/64/UBERON_0005364.md +++ b/md/UBERON/64/UBERON_0005364.md @@ -6,18 +6,18 @@ ## Synonyms - * ganglion superius (nervus vagus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * ganglion superius nervus vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior ganglion of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * superior ganglion of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] + * ganglion superius (nervus vagus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * ganglion superius nervus vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior ganglion of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * superior ganglion of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] * superior vagus ganglion - * tenth cranial nerve jugular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * vagus nerve jugular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * vagus nerve superior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * superior vagus X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17156] - * gasserian ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17156] - * jugular ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6229] - * vagus X superior ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000686] + * tenth cranial nerve jugular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * vagus nerve jugular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * vagus nerve superior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * superior vagus X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17156 ] + * gasserian ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17156 ] + * jugular ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6229 ] + * vagus X superior ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000686 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005464.md b/md/UBERON/64/UBERON_0005464.md index 11c956358c..519e3b20e0 100644 --- a/md/UBERON/64/UBERON_0005464.md +++ b/md/UBERON/64/UBERON_0005464.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005464 * *Label* = median sacral artery - * *Definition* = The median sacral artery (or middle sacral artery) is a small vessel, which arises from the back of the aorta, a little above its bifurcation. It descends in the middle line in front of the fourth and fifth lumbar vertebr, the sacrum and coccyx, and ends in the glomus coccygeum (coccygeal gland). From it, minute branches are said to pass to the posterior surface of the rectum. On the last lumbar vertebra it anastomoses with the lumbar branch of the iliolumbar artery; in front of the sacrum it anastomoses with the lateral sacral arteries, and sends offsets into the anterior sacral foramina. It is crossed by the left common iliac vein, and is accompanied by a pair of ven comitantes; these unite to form a single vessel, which opens into the left common iliac vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_sacral_artery] + * *Definition* = The median sacral artery (or middle sacral artery) is a small vessel, which arises from the back of the aorta, a little above its bifurcation. It descends in the middle line in front of the fourth and fifth lumbar vertebr, the sacrum and coccyx, and ends in the glomus coccygeum (coccygeal gland). From it, minute branches are said to pass to the posterior surface of the rectum. On the last lumbar vertebra it anastomoses with the lumbar branch of the iliolumbar artery; in front of the sacrum it anastomoses with the lateral sacral arteries, and sends offsets into the anterior sacral foramina. It is crossed by the left common iliac vein, and is accompanied by a pair of ven comitantes; these unite to form a single vessel, which opens into the left common iliac vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_sacral_artery ] ## Synonyms - * Middle sacral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14757] - * arteria sacralis mediana [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_sacral_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * coccygeal branches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_sacral_artery] - * middle sacral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_sacral_artery] - * middle sacral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_sacral_artery] + * Middle sacral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14757 ] + * arteria sacralis mediana [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_sacral_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * coccygeal branches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_sacral_artery ] + * middle sacral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_sacral_artery ] + * middle sacral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_sacral_artery ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005564.md b/md/UBERON/64/UBERON_0005564.md index b4a66dcdda..047bea4bcc 100644 --- a/md/UBERON/64/UBERON_0005564.md +++ b/md/UBERON/64/UBERON_0005564.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005564 * *Label* = gonad primordium - * *Definition* = Portion of tissue that gives rise to the immature gonad. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001262] + * *Definition* = Portion of tissue that gives rise to the immature gonad. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001262 ] * *Comment* = Taxon notes: this is a very broad grouping class ## Synonyms - * gonadal primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001262] - * undifferentiated gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001262] + * gonadal primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001262 ] + * undifferentiated gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001262 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005664.md b/md/UBERON/64/UBERON_0005664.md index d95f01d362..5b6338bf59 100644 --- a/md/UBERON/64/UBERON_0005664.md +++ b/md/UBERON/64/UBERON_0005664.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005664 * *Label* = 2nd arch endoderm - * *Definition* = An endoderm that is part of a pharyngeal arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a pharyngeal arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd pharyngeal arch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001108] + * 2nd pharyngeal arch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001108 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0005764.md b/md/UBERON/64/UBERON_0005764.md index ee12fda23a..69bcfb8502 100644 --- a/md/UBERON/64/UBERON_0005764.md +++ b/md/UBERON/64/UBERON_0005764.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006164.md b/md/UBERON/64/UBERON_0006164.md index 592511fc37..ba3fdde926 100644 --- a/md/UBERON/64/UBERON_0006164.md +++ b/md/UBERON/64/UBERON_0006164.md @@ -6,7 +6,7 @@ ## Synonyms - * wing common dorsal digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing common dorsal digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006264.md b/md/UBERON/64/UBERON_0006264.md index 3e05119097..8153bb59f6 100644 --- a/md/UBERON/64/UBERON_0006264.md +++ b/md/UBERON/64/UBERON_0006264.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006264 * *Label* = mouth-foregut junction - * *Definition* = An anatomical junctions that overlaps the mouth and foregut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical junctions that overlaps the mouth and foregut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,12 +23,12 @@ * [anatomical junction](../../UBERON/51/UBERON_0007651.md) * [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mouth](../../UBERON/65/UBERON_0000165.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [mouth](../../UBERON/65/UBERON_0000165.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006364.md b/md/UBERON/64/UBERON_0006364.md index 6eb55132eb..80e62301cd 100644 --- a/md/UBERON/64/UBERON_0006364.md +++ b/md/UBERON/64/UBERON_0006364.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006364 * *Label* = ureteric bud tip - * *Definition* = The terminal end of the ureteric tree; the ureteric tip cells are proliferating immature cells located at the branching points that induce the adjacent cap mesenchyme to undergo nephrogenesis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011760[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/Organ_Summaries/Metanephros/Ureteric_tip.html] + * *Definition* = The terminal end of the ureteric tree; the ureteric tip cells are proliferating immature cells located at the branching points that induce the adjacent cap mesenchyme to undergo nephrogenesis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011760, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/Organ_Summaries/Metanephros/Ureteric_tip.html ] * *Comment* = Editor note: MA placement to be checked ## Synonyms - * ureteric tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002601] - * ureteric ampulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011760] - * ureteric bud ampulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011760] + * ureteric tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002601 ] + * ureteric ampulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011760 ] + * ureteric bud ampulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011760 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006464.md b/md/UBERON/64/UBERON_0006464.md index 409704836e..861e4ef418 100644 --- a/md/UBERON/64/UBERON_0006464.md +++ b/md/UBERON/64/UBERON_0006464.md @@ -6,16 +6,16 @@ ## Synonyms - * S5 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256633] - * S5 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1553] - * fifth sacral spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1553] + * S5 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256633 ] + * S5 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1553 ] + * fifth sacral spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1553 ] ## Cross-references * FMA:256633 * NIF_GrossAnatomy:birnlex_1553 * SCTID:278784008 - * UMLS:C0457880 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1553] + * UMLS:C0457880 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1553 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006564.md b/md/UBERON/64/UBERON_0006564.md index ef3e3d1769..47e69f9cc3 100644 --- a/md/UBERON/64/UBERON_0006564.md +++ b/md/UBERON/64/UBERON_0006564.md @@ -6,16 +6,16 @@ ## Synonyms - * Superficial palmar arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22834] - * arcus palmaris superficialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22834[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superficial palmar arterial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22834] + * Superficial palmar arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22834 ] + * arcus palmaris superficialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22834, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superficial palmar arterial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22834 ] ## Cross-references * FMA:22834 * MA:0002127 * SCTID:362051006 - * UMLS:C0226433 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superficial_Palmar_Arch] + * UMLS:C0226433 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superficial_Palmar_Arch ] * ncithesaurus:Superficial_Palmar_Arch ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006664.md b/md/UBERON/64/UBERON_0006664.md index d26cbb1f16..455a6959f0 100644 --- a/md/UBERON/64/UBERON_0006664.md +++ b/md/UBERON/64/UBERON_0006664.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006664 * *Label* = greater palatine artery - * *Definition* = The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_palatine_artery] + * *Definition* = The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_palatine_artery ] * *Comment* = todo - check for synonymy between greater and major; branching_part_of relation is made in FMA at level of descending GPA ## Synonyms - * major palatine artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001993] - * arteria palatina major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_palatine_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * major palatine artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001993 ] + * arteria palatina major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_palatine_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006764.md b/md/UBERON/64/UBERON_0006764.md index 57fe6b5a76..2d7cc307d3 100644 --- a/md/UBERON/64/UBERON_0006764.md +++ b/md/UBERON/64/UBERON_0006764.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006764 * *Label* = anterior communicating artery - * *Definition* = In human anatomy, the anterior communicating artery is a blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_communicating_artery] + * *Definition* = In human anatomy, the anterior communicating artery is a blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_communicating_artery ] ## Synonyms - * arteria communicans anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_communicating_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria communicans anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_communicating_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,7 +15,7 @@ * EMAPA:18599 * FMA:50169 * SCTID:181311009 - * UMLS:C0149562 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Communicating_Artery] + * UMLS:C0149562 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Communicating_Artery ] * Wikipedia:Anterior_communicating_artery * http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg * ncithesaurus:Anterior_Communicating_Artery @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006864.md b/md/UBERON/64/UBERON_0006864.md index 837c62529a..1e91c9bd24 100644 --- a/md/UBERON/64/UBERON_0006864.md +++ b/md/UBERON/64/UBERON_0006864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006864 * *Label* = distal metaphysis of femur - * *Definition* = A distal metaphysis that is part of a femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal metaphysis that is part of a femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal metaphysis](../../UBERON/77/UBERON_0004377.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0006964.md b/md/UBERON/64/UBERON_0006964.md index e54eb04ce2..8ea5077e7f 100644 --- a/md/UBERON/64/UBERON_0006964.md +++ b/md/UBERON/64/UBERON_0006964.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006964 * *Label* = pars distalis of adenohypophysis - * *Definition* = The distal part of adenohypophysis: the part that makes up the main body of the gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pars_distalis] + * *Definition* = The distal part of adenohypophysis: the part that makes up the main body of the gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pars_distalis ] ## Synonyms - * distal part of hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1022] - * pars anterior of adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74630] - * pars distalis (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74630[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars distalis adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74630[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars distalis of anterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74630] - * pars glandularis of adenohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74630] - * DHP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1022[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * pars anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001416[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000854[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001195] - * anterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000854] - * distal part of the hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:410] - * pars distalis (hypophysis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:410[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000854] - * pars distalis adenohypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001787] - * pars distalis lobi anterioris hypophyseos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001787] - * pars glandularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000854] + * distal part of hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1022 ] + * pars anterior of adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74630 ] + * pars distalis (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74630, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars distalis adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74630, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars distalis of anterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74630 ] + * pars glandularis of adenohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74630 ] + * DHP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1022, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * pars anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001416, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000854, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001195 ] + * anterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000854 ] + * distal part of the hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:410 ] + * pars distalis (hypophysis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:410, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000854 ] + * pars distalis adenohypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001787 ] + * pars distalis lobi anterioris hypophyseos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001787 ] + * pars glandularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000854 ] ## Cross-references @@ -34,9 +34,9 @@ * FMA:74630 * MA:0000854 * NIF_GrossAnatomy:birnlex_1022 - * NeuroNames:410 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1022] + * NeuroNames:410 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1022 ] * TAO:0001195 - * UMLS:C0175322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1022] + * UMLS:C0175322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1022 ] * VHOG:0000244 * Wikipedia:Pars_distalis * ZFA:0001195 @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior part of the adenohypophysis. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0007164.md b/md/UBERON/64/UBERON_0007164.md index d7adcdb3ba..8eaac9e721 100644 --- a/md/UBERON/64/UBERON_0007164.md +++ b/md/UBERON/64/UBERON_0007164.md @@ -6,10 +6,10 @@ ## Synonyms - * articulation radioulnaris distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35290] - * distal radioulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35290] - * inferior radioulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35290] - * radio-ulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000462] + * articulation radioulnaris distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35290 ] + * distal radioulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35290 ] + * inferior radioulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35290 ] + * radio-ulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000462 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0007264.md b/md/UBERON/64/UBERON_0007264.md index 52e1aec218..7b90d36509 100644 --- a/md/UBERON/64/UBERON_0007264.md +++ b/md/UBERON/64/UBERON_0007264.md @@ -6,7 +6,7 @@ ## Synonyms - * intervertebral disk, C7-T1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13900] + * intervertebral disk, C7-T1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13900 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 7](../../UBERON/16/UBERON_0004616.md) and [connects](../../ts/core#connects.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0007364.md b/md/UBERON/64/UBERON_0007364.md index c8b6950573..4fe0533a08 100644 --- a/md/UBERON/64/UBERON_0007364.md +++ b/md/UBERON/64/UBERON_0007364.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007364 * *Label* = reticulorumen - * *Definition* = first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticulorumen] + * *Definition* = first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticulorumen ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0007764.md b/md/UBERON/64/UBERON_0007764.md index 6f21dfb040..bdc2e0ca94 100644 --- a/md/UBERON/64/UBERON_0007764.md +++ b/md/UBERON/64/UBERON_0007764.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007764 * *Label* = paramedian reticular nucleus - * *Definition* = The paramedian reticular nucleus (in Terminologia Anatomica, or paramedian medullary reticular group in NeuroNames) sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paramedian_reticular_nucleus] + * *Definition* = The paramedian reticular nucleus (in Terminologia Anatomica, or paramedian medullary reticular group in NeuroNames) sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paramedian_reticular_nucleus ] * *Comment* = todo - check ## Synonyms - * ventral paramedian reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72583] - * nucleus reticularis paramedianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paramedian_reticular_nucleus] - * paramedian nucleus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paramedian_reticular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventral paramedian reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72583 ] + * nucleus reticularis paramedianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paramedian_reticular_nucleus ] + * paramedian nucleus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paramedian_reticular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0008264.md b/md/UBERON/64/UBERON_0008264.md index 793787732a..8802f9432e 100644 --- a/md/UBERON/64/UBERON_0008264.md +++ b/md/UBERON/64/UBERON_0008264.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008264 * *Label* = echinopluteus larval stage - * *Definition* = Larval stage in echinoderms characterized by a planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] + * *Definition* = Larval stage in echinoderms characterized by a planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0008464.md b/md/UBERON/64/UBERON_0008464.md index d9878d5c73..2157fee5d5 100644 --- a/md/UBERON/64/UBERON_0008464.md +++ b/md/UBERON/64/UBERON_0008464.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008464 * *Label* = abductor hallucis muscle - * *Definition* = The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_hallucis_muscle] + * *Definition* = The Abductor hallucis lies along the medial border of the pes and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_hallucis_muscle ] ## Synonyms - * abductor hallucis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_hallucis_muscle] - * musculus abductor hallucis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_hallucis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abductor hallucis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_hallucis_muscle ] + * musculus abductor hallucis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_hallucis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0008964.md b/md/UBERON/64/UBERON_0008964.md index d3b821670a..11177ad14f 100644 --- a/md/UBERON/64/UBERON_0008964.md +++ b/md/UBERON/64/UBERON_0008964.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008964 * *Label* = abdominal ganglion of visceral hump - * *Definition* = The visceral sacs nerve knot is called visceral ganglion. In contrary to the mostly paired other ganglia this nerve knot is unpaired. The visceral ganglion innerves the pallial organs as well as the inner organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000022] + * *Definition* = The visceral sacs nerve knot is called visceral ganglion. In contrary to the mostly paired other ganglia this nerve knot is unpaired. The visceral ganglion innerves the pallial organs as well as the inner organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000022 ] ## Synonyms - * abdominal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000022] - * visceral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000022] + * abdominal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000022 ] + * visceral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000022 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0009064.md b/md/UBERON/64/UBERON_0009064.md index 0ab286ee49..943ccf580c 100644 --- a/md/UBERON/64/UBERON_0009064.md +++ b/md/UBERON/64/UBERON_0009064.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0009564.md b/md/UBERON/64/UBERON_0009564.md index 68ea6cc4af..bfb435210b 100644 --- a/md/UBERON/64/UBERON_0009564.md +++ b/md/UBERON/64/UBERON_0009564.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009564 * *Label* = distal limb integumentary appendage - * *Definition* = A nail, hoof or claw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11710767] + * *Definition* = A nail, hoof or claw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11710767 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0009664.md b/md/UBERON/64/UBERON_0009664.md index 46a9911b53..b95fdc10e9 100644 --- a/md/UBERON/64/UBERON_0009664.md +++ b/md/UBERON/64/UBERON_0009664.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0009864.md b/md/UBERON/64/UBERON_0009864.md index 2c2ee05d03..7d2ef4dc29 100644 --- a/md/UBERON/64/UBERON_0009864.md +++ b/md/UBERON/64/UBERON_0009864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009864 * *Label* = ascidian neural gland - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21558186] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21558186 ] * *Comment* = assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0009964.md b/md/UBERON/64/UBERON_0009964.md index ce744eb7b5..cfbe2215f5 100644 --- a/md/UBERON/64/UBERON_0009964.md +++ b/md/UBERON/64/UBERON_0009964.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009964 * *Label* = crustacean maxillary gland - * *Definition* = Excretory organ in maxillary segment with duct opening on maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://crustacea.nhm.org/glossary/define.html] + * *Definition* = Excretory organ in maxillary segment with duct opening on maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://crustacea.nhm.org/glossary/define.html ] * *Comment* = Taxon notes: consider generalizing to include millipedes, centipedes. Function: Two different excretory organs are found among crustaceans: the antennal gland and the maxillary gland. Both have the same basic structure: an end sac and a convoluted duct that may expand into a bladder before opening to the outside. In most adult crustaceans only one or the other gland functions. The functional gland may change during the life cycle. Terminology note: http://crustacea.nhm.org/glossary/define.html?termID=327 suggests green gland as the generic term and antennal as the decapoda term. Editor note: cede this term to Arthropod AO ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010064.md b/md/UBERON/64/UBERON_0010064.md index 057790c702..a450cfd9dd 100644 --- a/md/UBERON/64/UBERON_0010064.md +++ b/md/UBERON/64/UBERON_0010064.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010064 * *Label* = open anatomical space - * *Definition* = An anatomical space with at least one opening to another space or the exterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000221] + * *Definition* = An anatomical space with at least one opening to another space or the exterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000221 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [has_quality](../../SIO/08/SIO_000008.md) some [open](../../PATO/10/PATO_0000610.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010164.md b/md/UBERON/64/UBERON_0010164.md index 4d49b79c4b..9ba62f2c8f 100644 --- a/md/UBERON/64/UBERON_0010164.md +++ b/md/UBERON/64/UBERON_0010164.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010164 * *Label* = collection of hairs - * *Definition* = An anatomical cluster that composed_primarily_of a strand of hair. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cluster that composed_primarily_of a strand of hair. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hairs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70752] - * hairs set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70752] - * pili [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of hairs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70752] + * hairs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70752 ] + * hairs set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70752 ] + * pili [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of hairs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70752 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cluster](../../UBERON/77/UBERON_0000477.md) and [has member](../../RO/51/RO_0002351.md) some [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010264.md b/md/UBERON/64/UBERON_0010264.md index 7ac5c70f1e..bc6c41e6ba 100644 --- a/md/UBERON/64/UBERON_0010264.md +++ b/md/UBERON/64/UBERON_0010264.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010264 * *Label* = hepatopancreas - * *Definition* = an organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatopancreas] + * *Definition* = an organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatopancreas ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6657 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010364.md b/md/UBERON/64/UBERON_0010364.md index ed5e8fb142..207fa9410a 100644 --- a/md/UBERON/64/UBERON_0010364.md +++ b/md/UBERON/64/UBERON_0010364.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010364 * *Label* = dermal skeleton - * *Definition* = Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000035[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000035, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO ## Synonyms - * exoskeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * dermal skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * dermoskeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * desmoskeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * exoskeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * dermal skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * dermoskeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * desmoskeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010564.md b/md/UBERON/64/UBERON_0010564.md index 95e3ab402f..5977cd0290 100644 --- a/md/UBERON/64/UBERON_0010564.md +++ b/md/UBERON/64/UBERON_0010564.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010564 * *Label* = manual digit 1 mesenchyme - * *Definition* = Mesenchyme that is part of a manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 1 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 1 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0010864.md b/md/UBERON/64/UBERON_0010864.md index 6772c96cdc..048beed57d 100644 --- a/md/UBERON/64/UBERON_0010864.md +++ b/md/UBERON/64/UBERON_0010864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010864 * *Label* = dactylopatagium minus - * *Definition* = A dactylopatagium that is connected_to a manual digit 2 and connected_to a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dactylopatagium that is connected_to a manual digit 2 and connected_to a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [dactylopatagium](../../UBERON/62/UBERON_0010862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011164.md b/md/UBERON/64/UBERON_0011164.md index e79f48e6a8..9cb9db99de 100644 --- a/md/UBERON/64/UBERON_0011164.md +++ b/md/UBERON/64/UBERON_0011164.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011164 * *Label* = neurocranium bone - * *Definition* = A bone that is part of a neurocranium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a neurocranium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chondrocranium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001478] + * chondrocranium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001478 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011264.md b/md/UBERON/64/UBERON_0011264.md index 4395da3004..4610d7555f 100644 --- a/md/UBERON/64/UBERON_0011264.md +++ b/md/UBERON/64/UBERON_0011264.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011264 * *Label* = femoral pore - * *Definition* = Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_pore] + * *Definition* = Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_pore ] * *Comment* = Taxon notes: Femoral pores are present in all genera in the families Cordylidae, Crotaphytidae, Hoplocercidae, Iguanidae, Phrynosomatidae, and Xantusiidae.[1] They are absent in all genera in the Anguidae, Chamaeleonidae, Dibamidae, Helodermatidae, Scincidae, Xenosauridae, and Varanidae families.[1] They are present in other lizards and amphisbaenians quite variably, some geckoes, Phelsuma, for example have these pores, others in the same family do not[WP] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femoral gland](../../UBERON/63/UBERON_0011263.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011264 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011364.md b/md/UBERON/64/UBERON_0011364.md index 7ccee4fcaf..250a53dce4 100644 --- a/md/UBERON/64/UBERON_0011364.md +++ b/md/UBERON/64/UBERON_0011364.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011364 * *Label* = cleidocephalicus muscle - * *Definition* = The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:379] + * *Definition* = The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:379 ] * *Comment* = alt def: "Combination of cleidomastoid and cleidocervical muscles" ## Synonyms - * cleidocephalic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002275] + * cleidocephalic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002275 ] * cleidocephalic muscle * cleidocephalicus * cleidomastoid @@ -19,7 +19,7 @@ ## Cross-references * MA:0002275 - * UMLS:C1707412 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cleidocephalic] + * UMLS:C1707412 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cleidocephalic ] * ncithesaurus:Cleidocephalic ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [attaches_to](../../RO/71/RO_0002371.md) some [mastoid process of temporal bone](../../UBERON/20/UBERON_0011220.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011464.md b/md/UBERON/64/UBERON_0011464.md index 092c22f7fe..34a0e5075c 100644 --- a/md/UBERON/64/UBERON_0011464.md +++ b/md/UBERON/64/UBERON_0011464.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011464 * *Label* = levator nasolabialis muscle - * *Definition* = Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1180] + * *Definition* = Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1180 ] ## Synonyms - * levator nasolabialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002334] + * levator nasolabialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002334 ] ## Cross-references * MA:0002334 - * UMLS:C1708693 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Levator_Nasolabialis] + * UMLS:C1708693 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Levator_Nasolabialis ] * ncithesaurus:Levator_Nasolabialis ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011564.md b/md/UBERON/64/UBERON_0011564.md index 08b31ca4ea..0e51e388ad 100644 --- a/md/UBERON/64/UBERON_0011564.md +++ b/md/UBERON/64/UBERON_0011564.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011564 * *Label* = adductor pollicis muscle of prepollex - * *Definition* = Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010811] + * *Definition* = Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010811 ] ## Synonyms - * m. adductor pollicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010811] + * m. adductor pollicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010811 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011564 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011664.md b/md/UBERON/64/UBERON_0011664.md index 017541a191..ce854f19a8 100644 --- a/md/UBERON/64/UBERON_0011664.md +++ b/md/UBERON/64/UBERON_0011664.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011864.md b/md/UBERON/64/UBERON_0011864.md index b93af92711..dacd2327f3 100644 --- a/md/UBERON/64/UBERON_0011864.md +++ b/md/UBERON/64/UBERON_0011864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011864 * *Label* = tendon collagen fibril - * *Definition* = the connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011643] + * *Definition* = the connective tissue bundles in the extracellular matrix of tendon tissue that are composed of collagen, and play a role in tissue strength and elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011643 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collagen fibril](../../UBERON/60/UBERON_0011860.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tendon](../../UBERON/43/UBERON_0000043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0011964.md b/md/UBERON/64/UBERON_0011964.md index 984dfcf64d..a5b21077ff 100644 --- a/md/UBERON/64/UBERON_0011964.md +++ b/md/UBERON/64/UBERON_0011964.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011964 * *Label* = calcaneocuboid joint - * *Definition* = Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcaneocuboid_articulation] + * *Definition* = Calcaneocuboid Articulation (articulation of the calcaneus with the cuboid). The ligaments connecting the calcaneus with the cuboid are five in number, viz. , the articular capsule, the dorsal calcaneocuboid, part of the bifurcated, the long plantar, and the plantar calcaneocuboid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcaneocuboid_articulation ] ## Synonyms - * articulatio calcaneocubiodea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35207[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * calcaneocuboid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcaneocuboid_articulation] + * articulatio calcaneocubiodea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35207, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * calcaneocuboid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcaneocuboid_articulation ] * calcaneocuboidal joint ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [calcaneus](../../UBERON/50/UBERON_0001450.md) and [connects](../../ts/core#connects.md) some [cuboid bone](../../UBERON/55/UBERON_0001455.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011964 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0012264.md b/md/UBERON/64/UBERON_0012264.md index efb7a857cc..ac5fefa7fb 100644 --- a/md/UBERON/64/UBERON_0012264.md +++ b/md/UBERON/64/UBERON_0012264.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003647 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012264 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_0012364.md b/md/UBERON/64/UBERON_0012364.md index 24eca834da..548298a406 100644 --- a/md/UBERON/64/UBERON_0012364.md +++ b/md/UBERON/64/UBERON_0012364.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012364 * *Label* = colloid of thyroid follicle - * *Definition* = portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = portion of substance contained within the thyroid follicle lumen. Contains prohormone thyroglobulin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * thyroid colloid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68831] - * thyroid follicle colloid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68831] + * thyroid colloid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68831 ] + * thyroid follicle colloid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68831 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012364 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0012464.md b/md/UBERON/64/UBERON_0012464.md index 931a5fc22b..3f4af88769 100644 --- a/md/UBERON/64/UBERON_0012464.md +++ b/md/UBERON/64/UBERON_0012464.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012464 * *Label* = cloacal vent - * *Definition* = The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The opening of the cloacal chamber to the outside of the organism. Birds maintain a single cloacal opening throughout their lives. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0013164.md b/md/UBERON/64/UBERON_0013164.md index b6ccecec5b..7cd337c828 100644 --- a/md/UBERON/64/UBERON_0013164.md +++ b/md/UBERON/64/UBERON_0013164.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013164 * *Label* = molariform tooth - * *Definition* = A molar or premolar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A molar or premolar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * postcanine tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.termwiki.com/EN:postcanine_teeth] - * cheek tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * molariform [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * postcanine tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.termwiki.com/EN:postcanine_teeth ] + * cheek tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * molariform [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013164 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0013764.md b/md/UBERON/64/UBERON_0013764.md index f28999ad36..4168396a3f 100644 --- a/md/UBERON/64/UBERON_0013764.md +++ b/md/UBERON/64/UBERON_0013764.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013764 * *Label* = common crus of semicircular duct - * *Definition* = A nonampullary end of the superior or posterior semicircular ducts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts] + * *Definition* = A nonampullary end of the superior or posterior semicircular ducts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=common+membranous+limb+of+semicircular+ducts ] ## Synonyms * common membranous limb of membranous semicircular ducts - * common membranous limb of semicircular ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71881] - * crus membranaceum commune ductus semicircularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crus membranaceum commune ductuum semicircularium [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * common membranous limb of semicircular ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71881 ] + * crus membranaceum commune ductus semicircularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crus membranaceum commune ductuum semicircularium [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * common crus ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0014464.md b/md/UBERON/64/UBERON_0014464.md index ed41b47cfb..e5dbf223bf 100644 --- a/md/UBERON/64/UBERON_0014464.md +++ b/md/UBERON/64/UBERON_0014464.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014464 * *Label* = renal fat pad - * *Definition* = Encapsulated adipose tissue associated with the kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008902] + * *Definition* = Encapsulated adipose tissue associated with the kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008902 ] ## Synonyms - * perirenal fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008902] + * perirenal fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008902 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014464 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0014664.md b/md/UBERON/64/UBERON_0014664.md index 7ab65613bf..f8ab6e4e26 100644 --- a/md/UBERON/64/UBERON_0014664.md +++ b/md/UBERON/64/UBERON_0014664.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014664 * *Label* = nucleus recessus posterioris - * *Definition* = The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003663] + * *Definition* = The fish catecholamines originate in two large aggregations of neurons: the nucleus recessus lateralis (NRL) and the nucleus recessus posterioris (NRP). The nuclei were found in the hypothalamus of numerous species, e.g., the gold fish, eel, and roach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003663 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014664 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0014764.md b/md/UBERON/64/UBERON_0014764.md index e4cf110670..a69e7adb66 100644 --- a/md/UBERON/64/UBERON_0014764.md +++ b/md/UBERON/64/UBERON_0014764.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014764 * *Label* = anatomical line along groove - * *Definition* = Anatomical line that delineates a furrow or depression in an organ or tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001690[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4] + * *Definition* = Anatomical line that delineates a furrow or depression in an organ or tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001690, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/human-developmental-anatomy-ontology/issues/4 ] ## Synonyms * line delineating groove - * groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001690] + * groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001690 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014764 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0014864.md b/md/UBERON/64/UBERON_0014864.md index 98b57759fe..d78be7f4cb 100644 --- a/md/UBERON/64/UBERON_0014864.md +++ b/md/UBERON/64/UBERON_0014864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014864 * *Label* = caterpillar stage - * *Definition* = The larval stage of members of the order Lepidoptera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caterpillar] + * *Definition* = The larval stage of members of the order Lepidoptera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caterpillar ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014864 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_0015064.md b/md/UBERON/64/UBERON_0015064.md index 6b749af48d..0bc2c4aae8 100644 --- a/md/UBERON/64/UBERON_0015064.md +++ b/md/UBERON/64/UBERON_0015064.md @@ -21,7 +21,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod endochondral element](../../UBERON/63/UBERON_0015063.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -29,8 +29,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015064 + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000164.md b/md/UBERON/64/UBERON_2000164.md index 49fce1255d..bbc26d8041 100644 --- a/md/UBERON/64/UBERON_2000164.md +++ b/md/UBERON/64/UBERON_2000164.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000264.md b/md/UBERON/64/UBERON_2000264.md index aa3489afea..e263e50cc4 100644 --- a/md/UBERON/64/UBERON_2000264.md +++ b/md/UBERON/64/UBERON_2000264.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000264 * *Label* = preopercle - * *Definition* = Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * preopercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000264[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * preoperculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000264] + * preopercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000264, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * preoperculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000264 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000364.md b/md/UBERON/64/UBERON_2000364.md index 7cf13919b4..09ab9c6201 100644 --- a/md/UBERON/64/UBERON_2000364.md +++ b/md/UBERON/64/UBERON_2000364.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000364 * *Label* = hypural - * *Definition* = Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * hyp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000364] - * hypuralia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000364] - * hypurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000364[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * hyp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000364 ] + * hypuralia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000364 ] + * hypurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000364, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000464.md b/md/UBERON/64/UBERON_2000464.md index ada19319ee..2f12cc2e91 100644 --- a/md/UBERON/64/UBERON_2000464.md +++ b/md/UBERON/64/UBERON_2000464.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000464 * *Label* = otic lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000564.md b/md/UBERON/64/UBERON_2000564.md index c50917ca5d..28279d8897 100644 --- a/md/UBERON/64/UBERON_2000564.md +++ b/md/UBERON/64/UBERON_2000564.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000864.md b/md/UBERON/64/UBERON_2000864.md index 02b1ae5ee8..0948bdc6db 100644 --- a/md/UBERON/64/UBERON_2000864.md +++ b/md/UBERON/64/UBERON_2000864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000864 * *Label* = epaxial region somite 1 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2000964.md b/md/UBERON/64/UBERON_2000964.md index fee957f0a7..7e3fc3fd70 100644 --- a/md/UBERON/64/UBERON_2000964.md +++ b/md/UBERON/64/UBERON_2000964.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000964[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000964, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_2001164.md b/md/UBERON/64/UBERON_2001164.md index 2b312a0b96..ea71f3c456 100644 --- a/md/UBERON/64/UBERON_2001164.md +++ b/md/UBERON/64/UBERON_2001164.md @@ -6,7 +6,7 @@ ## Synonyms - * sn6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001164] + * sn6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001164 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001364.md b/md/UBERON/64/UBERON_2001364.md index e964df6f29..0c0c9d50d5 100644 --- a/md/UBERON/64/UBERON_2001364.md +++ b/md/UBERON/64/UBERON_2001364.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001364 * *Label* = hemal spine - * *Definition* = Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * haemacanthe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000115] - * haemal spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001364] - * h?macanthe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000143] - * ?pine h?male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] + * haemacanthe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000115 ] + * haemal spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001364 ] + * h?macanthe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000143 ] + * ?pine h?male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001564.md b/md/UBERON/64/UBERON_2001564.md index e3c314cfa0..0fe686b7e3 100644 --- a/md/UBERON/64/UBERON_2001564.md +++ b/md/UBERON/64/UBERON_2001564.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001664.md b/md/UBERON/64/UBERON_2001664.md index 9e38162ba7..afc0db0f9d 100644 --- a/md/UBERON/64/UBERON_2001664.md +++ b/md/UBERON/64/UBERON_2001664.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001664 * *Label* = basibranchial 2 tooth plate - * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basibranchial 2 toothplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001664] + * basibranchial 2 toothplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001664 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001764.md b/md/UBERON/64/UBERON_2001764.md index d5a2eeb0e3..05cce5a233 100644 --- a/md/UBERON/64/UBERON_2001764.md +++ b/md/UBERON/64/UBERON_2001764.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001764 * *Label* = pectoral fin lepidotrichium 4 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001764] + * pectoral fin ray 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001764 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001864.md b/md/UBERON/64/UBERON_2001864.md index 2bd34549cb..80eddaa0c0 100644 --- a/md/UBERON/64/UBERON_2001864.md +++ b/md/UBERON/64/UBERON_2001864.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001864 * *Label* = basibranchial 1 cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 1 (pharyngeal arch 3). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 1 element](../../UBERON/15/UBERON_2001915.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2001964.md b/md/UBERON/64/UBERON_2001964.md index be2c3a0b0f..82cb1a5107 100644 --- a/md/UBERON/64/UBERON_2001964.md +++ b/md/UBERON/64/UBERON_2001964.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001964 * *Label* = epibranchial 3 bone uncinate process cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2002064.md b/md/UBERON/64/UBERON_2002064.md index 14b3037dbc..0256faa2d1 100644 --- a/md/UBERON/64/UBERON_2002064.md +++ b/md/UBERON/64/UBERON_2002064.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002064 * *Label* = uroneural 1 - * *Definition* = Uroneural that is the anteriormost element of the uroneural series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Uroneural that is the anteriormost element of the uroneural series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2002164.md b/md/UBERON/64/UBERON_2002164.md index 559cd89553..23a0c32687 100644 --- a/md/UBERON/64/UBERON_2002164.md +++ b/md/UBERON/64/UBERON_2002164.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002164 * *Label* = caudal principal ray set - * *Definition* = Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). ## Synonyms - * branched caudal rays [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002164] - * caudal principal lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002164[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * branched caudal rays [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002164 ] + * caudal principal lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002164, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2002264.md b/md/UBERON/64/UBERON_2002264.md index 6c8e88a21d..1a0490b55d 100644 --- a/md/UBERON/64/UBERON_2002264.md +++ b/md/UBERON/64/UBERON_2002264.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_2005264.md b/md/UBERON/64/UBERON_2005264.md index 2f40efef60..2b7aef3e9b 100644 --- a/md/UBERON/64/UBERON_2005264.md +++ b/md/UBERON/64/UBERON_2005264.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [actinopterygian parietal bone](../../UBERON/65/UBERON_0004865.md) and [core#connects](../../ts/core#connects.md) some [supraoccipital bone](../../UBERON/47/UBERON_0004747.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3000164.md b/md/UBERON/64/UBERON_3000164.md index 2390d89560..d9d13824e0 100644 --- a/md/UBERON/64/UBERON_3000164.md +++ b/md/UBERON/64/UBERON_3000164.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000164 * *Label* = fenestra lateralis nasi - * *Definition* = Opening on the lateral side of the nasal capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the lateral side of the nasal capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * fenestra infraconchalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000164] - * fenestra retronarina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000164] + * fenestra infraconchalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000164 ] + * fenestra retronarina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000164 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3000264.md b/md/UBERON/64/UBERON_3000264.md index a6d89bb2ec..ed6e68cf1c 100644 --- a/md/UBERON/64/UBERON_3000264.md +++ b/md/UBERON/64/UBERON_3000264.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000264 * *Label* = lamina superior - * *Definition* = Lateral expansion of the crista intermedia that serves as the roof of the cavum medium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral expansion of the crista intermedia that serves as the roof of the cavum medium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * lamina superior cristae intermediae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000264] + * lamina superior cristae intermediae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000264 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3000364.md b/md/UBERON/64/UBERON_3000364.md index d3f9fcb274..cba98914cc 100644 --- a/md/UBERON/64/UBERON_3000364.md +++ b/md/UBERON/64/UBERON_3000364.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000364 * *Label* = otic plate of pterygoid - * *Definition* = Osseous expansion of the posterior and medial rami of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Osseous expansion of the posterior and medial rami of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3000464.md b/md/UBERON/64/UBERON_3000464.md index f1fd9b14a1..7d16c330d7 100644 --- a/md/UBERON/64/UBERON_3000464.md +++ b/md/UBERON/64/UBERON_3000464.md @@ -6,7 +6,7 @@ ## Synonyms - * premaxillary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000464] + * premaxillary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000464 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:2001626 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Modified by cjm: added logical definition * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/64/UBERON_3000664.md b/md/UBERON/64/UBERON_3000664.md index 3f23622c07..726b9ed877 100644 --- a/md/UBERON/64/UBERON_3000664.md +++ b/md/UBERON/64/UBERON_3000664.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000664 * *Label* = hyoid plate - * *Definition* = Azygous or paired bone that occurs on the ventral surface of the hyoid plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Azygous or paired bone that occurs on the ventral surface of the hyoid plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3010164.md b/md/UBERON/64/UBERON_3010164.md index 7cceff5a10..8e17bca4ad 100644 --- a/md/UBERON/64/UBERON_3010164.md +++ b/md/UBERON/64/UBERON_3010164.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3010464.md b/md/UBERON/64/UBERON_3010464.md index 13dc5c08fe..4b5d63679a 100644 --- a/md/UBERON/64/UBERON_3010464.md +++ b/md/UBERON/64/UBERON_3010464.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3010564.md b/md/UBERON/64/UBERON_3010564.md index 7cf02b25e7..2a61eb946b 100644 --- a/md/UBERON/64/UBERON_3010564.md +++ b/md/UBERON/64/UBERON_3010564.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3010664.md b/md/UBERON/64/UBERON_3010664.md index 1b7225fb8e..33cf1bb261 100644 --- a/md/UBERON/64/UBERON_3010664.md +++ b/md/UBERON/64/UBERON_3010664.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010664 * *Label* = m. intertransversarius capitus superior - * *Definition* = Involved in the movement of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Involved in the movement of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_3010764.md b/md/UBERON/64/UBERON_3010764.md index f0a20a4385..6052767436 100644 --- a/md/UBERON/64/UBERON_3010764.md +++ b/md/UBERON/64/UBERON_3010764.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010764 * *Label* = laryngeus ventralis - * *Definition* = A branch of the vagus nerve innervating heart, stomach, and lung muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:CAM] + * *Definition* = A branch of the vagus nerve innervating heart, stomach, and lung muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:CAM ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/64/UBERON_4000164.md b/md/UBERON/64/UBERON_4000164.md index 71b808a7ed..0715d1e134 100644 --- a/md/UBERON/64/UBERON_4000164.md +++ b/md/UBERON/64/UBERON_4000164.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000164 * *Label* = caudal fin - * *Definition* = The caudal fin is the most posterior median fin. It is composed of a complex of modified centra and modified neural and hemal arches and spines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Phenoscape:PM] + * *Definition* = The caudal fin is the most posterior median fin. It is composed of a complex of modified centra and modified neural and hemal arches and spines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Phenoscape:PM ] ## Synonyms - * nageoire caudale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * uropt?re [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000135] - * uropt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] - * tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000164] - * tail fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000164] + * nageoire caudale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * uropt?re [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000135 ] + * uropt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] + * tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000164 ] + * tail fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000164 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0000065.md b/md/UBERON/65/UBERON_0000065.md index 3fc094eb69..d51e7e8d64 100644 --- a/md/UBERON/65/UBERON_0000065.md +++ b/md/UBERON/65/UBERON_0000065.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000065 * *Label* = respiratory tract - * *Definition* = anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0000165.md b/md/UBERON/65/UBERON_0000165.md index 48a9ac80db..c7a5c59ba0 100644 --- a/md/UBERON/65/UBERON_0000165.md +++ b/md/UBERON/65/UBERON_0000165.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000165 * *Label* = mouth - * *Definition* = The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes teeth, gums, lips, tongue and parts of the palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mouth[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/references/reference_0000034] + * *Definition* = The proximal portion of the digestive tract, containing the oral cavity and bounded by the oral opening. In vertebrates, this extends to the pharynx and includes teeth, gums, lips, tongue and parts of the palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mouth, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/references/reference_0000034 ] * *Comment* = AO notes: in FMA, the tongue, palate etc are part of the mouth which is itself a subdivision of the face. ZFA includes a separate class 'oral region' which is part of the mouth, but excludes tongue and lips. Development notes: some AOs place this as developing from the stomodeum but we weaken this to developmental contribution, as the mouth includes non-ectodermal derivatives ## Synonyms - * regio oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004698] - * regio oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49184[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004698 ] + * regio oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49184, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * adult mouth - * cavital oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mouth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavitas oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] - * cavum oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] - * mouth cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] - * oral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001326] - * oral vestibule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] - * rima oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] + * cavital oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mouth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavitas oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] + * cavum oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] + * mouth cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] + * oral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001326 ] + * oral vestibule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] + * rima oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] * stoma - * stomatodaeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000812] - * vestibule of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] - * vestibulum oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001090] + * stomatodaeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000812 ] + * vestibule of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] + * vestibulum oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001090 ] ## Cross-references @@ -68,13 +68,13 @@ * [ectodermal part of digestive tract](../../UBERON/06/UBERON_0004906.md) * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) * [proximalmost_part_of](../../BSPO/06/BSPO_0001106.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) * [develops from](../../RO/02/RO_0002202.md) some [stomodeum](../../UBERON/30/UBERON_0000930.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [proximalmost_part_of](../../BSPO/06/BSPO_0001106.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) and [subdivision of digestive tract](../../UBERON/21/UBERON_0004921.md) ## Other Logical Axioms @@ -85,8 +85,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Molecular and developmental cell lineage data suggest that the acoel mouth opening is homologous to the mouth of protostomes and deuterostomes and that the last common ancestor of the Bilateria (the 'urbilaterian') had only this single digestive opening.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = oral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0000365.md b/md/UBERON/65/UBERON_0000365.md index 916c0bd469..71388813ed 100644 --- a/md/UBERON/65/UBERON_0000365.md +++ b/md/UBERON/65/UBERON_0000365.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000365 * *Label* = urothelium - * *Definition* = The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urothelium] + * *Definition* = The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urothelium ] * *Comment* = consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'. MP treats them differently ## Synonyms - * uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67695] - * transitional epithelium [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67695 ] + * transitional epithelium [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -20,7 +20,7 @@ * GAID:935 * MESH:A10.272.850 * SCTID:57789003 - * UMLS:C0227598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urothelium] + * UMLS:C0227598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urothelium ] * Wikipedia:Urothelium * http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png * ncithesaurus:Urothelium @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [renal system](../../UBERON/08/UBERON_0001008.md) and [transitional epithelium](../../UBERON/10/UBERON_0005910.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = urothelial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0000465.md b/md/UBERON/65/UBERON_0000465.md index 9a37bdddf6..38da87db15 100644 --- a/md/UBERON/65/UBERON_0000465.md +++ b/md/UBERON/65/UBERON_0000465.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000465 * *Label* = material anatomical entity - * *Definition* = Anatomical entity that has mass. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical entity that has mass. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0000965.md b/md/UBERON/65/UBERON_0000965.md index 2612703616..8f53862fe1 100644 --- a/md/UBERON/65/UBERON_0000965.md +++ b/md/UBERON/65/UBERON_0000965.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000965 * *Label* = lens of camera-type eye - * *Definition* = Transparent part of camera-type eye that helps to refract light to be focused on the retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_(anatomy)] + * *Definition* = Transparent part of camera-type eye that helps to refract light to be focused on the retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_(anatomy) ] * *Comment* = Taxon notes: This class excludes compound eye corneal lenses. ## Synonyms - * camera-type eye lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002088] - * eye lens [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lens [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lens crystallina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_%28anatomy%29] - * crystalline lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000723] - * ocular lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000723] + * camera-type eye lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002088 ] + * eye lens [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lens [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lens crystallina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_%28anatomy%29 ] + * crystalline lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000723 ] + * ocular lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000723 ] ## Cross-references @@ -32,7 +32,7 @@ * RETIRED_EHDAA2:0000975 * SCTID:181169005 * TAO:0000035 - * UMLS:C0023317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Crystalline_Lens] + * UMLS:C0023317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Crystalline_Lens ] * VHOG:0000169 * Wikipedia:Lens_(anatomy) * XAO:0000008 @@ -63,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001065.md b/md/UBERON/65/UBERON_0001065.md index 5406822f6b..0849c86233 100644 --- a/md/UBERON/65/UBERON_0001065.md +++ b/md/UBERON/65/UBERON_0001065.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001065 * *Label* = parotid duct - * *Definition* = The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parotid_duct] + * *Definition* = The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parotid_duct ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Stensen's duct * Stensens's duct - * duct of parotid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * duct of parotid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * duct of parotid gland - * parotid gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * parotid gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * stenon duct - * ductus parotideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parotid_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ductus stenonianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004554] - * stenonianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004554] + * ductus parotideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parotid_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ductus stenonianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004554 ] + * stenonianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004554 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:10420 * MA:0002697 * SCTID:362175009 - * UMLS:C0227458 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parotid_Duct] + * UMLS:C0227458 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parotid_Duct ] * Wikipedia:Parotid_duct * http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1023.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parotid gland](../../UBERON/31/UBERON_0001831.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001165.md b/md/UBERON/65/UBERON_0001165.md index f4ece8211c..e2ee6feaf0 100644 --- a/md/UBERON/65/UBERON_0001165.md +++ b/md/UBERON/65/UBERON_0001165.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001165 * *Label* = pyloric antrum - * *Definition* = Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_antrum] + * *Definition* = Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_antrum ] ## Synonyms * antrum of stomach * stomach pyloric antrum * antrum - * antrum of Willis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001732] - * antrum pylori [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001732] - * antrum pyloricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001732] - * antrum pyloricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pyloric_antrum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gastric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001732] + * antrum of Willis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001732 ] + * antrum pylori [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001732 ] + * antrum pyloricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001732 ] + * antrum pyloricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pyloric_antrum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gastric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001732 ] * stomach antrum ## Cross-references @@ -28,7 +28,7 @@ * MA:0001624 * MESH:A03.492.766.716 * SCTID:362142001 - * UMLS:C0034193 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Antrum_Pylori] + * UMLS:C0034193 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Antrum_Pylori ] * Wikipedia:Pyloric_antrum * galen:PyloricAntrum * http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001265.md b/md/UBERON/65/UBERON_0001265.md index 5c209ef15a..3535f16fad 100644 --- a/md/UBERON/65/UBERON_0001265.md +++ b/md/UBERON/65/UBERON_0001265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001265 * *Label* = trabecula of spleen - * *Definition* = A trabecula that is part of a spleen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A trabecula that is part of a spleen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:16027 * MA:0000758 * SCTID:61987002 - * UMLS:C0229688 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Trabecula] + * UMLS:C0229688 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Trabecula ] * ncithesaurus:Splenic_Trabecula ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) and [trabecula](../../UBERON/40/UBERON_0000440.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001365.md b/md/UBERON/65/UBERON_0001365.md index 73bb5d8902..9655a3fbf1 100644 --- a/md/UBERON/65/UBERON_0001365.md +++ b/md/UBERON/65/UBERON_0001365.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001365 * *Label* = sacro-iliac joint - * *Definition* = the joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments. In humans, the sacrum supports the spine and is supported in turn by an ilium on each side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacroiliac_joint] + * *Definition* = the joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments. In humans, the sacrum supports the spine and is supported in turn by an ilium on each side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacroiliac_joint ] ## Synonyms @@ -18,7 +18,7 @@ * MA:0001506 * MESH:A02.835.583.707 * SCTID:182199004 - * UMLS:C0036036 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacroiliac_Joint] + * UMLS:C0036036 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacroiliac_Joint ] * Wikipedia:Sacroiliac_joint * http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray319.png * ncithesaurus:Sacroiliac_Joint @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [ilium](../../UBERON/73/UBERON_0001273.md) and [connects](../../ts/core#connects.md) some [sacrum](../../UBERON/90/UBERON_0003690.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001465.md b/md/UBERON/65/UBERON_0001465.md index 5b348a8165..e6f129b678 100644 --- a/md/UBERON/65/UBERON_0001465.md +++ b/md/UBERON/65/UBERON_0001465.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001465 * *Label* = knee - * *Definition* = A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001565.md b/md/UBERON/65/UBERON_0001565.md index d1e1955bc3..36913836a6 100644 --- a/md/UBERON/65/UBERON_0001565.md +++ b/md/UBERON/65/UBERON_0001565.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001565 * *Label* = geniohyoid muscle - * *Definition* = A jaw depressor muscle which in humans is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniohyoid_muscle] + * *Definition* = A jaw depressor muscle which in humans is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniohyoid_muscle ] * *Comment* = Action: draws hyoid cranially ## Synonyms * genio-hyoideus * genio-hyoideus muscle - * geniohyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniohyoid_muscle] - * geniohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniohyoid_muscle] - * geniohyoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniohyoid_muscle] + * geniohyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniohyoid_muscle ] + * geniohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniohyoid_muscle ] + * geniohyoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniohyoid_muscle ] * m. geniohyoideus - * musculus geniohyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Geniohyoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus geniohyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Geniohyoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46325 * MA:0002308 * SCTID:244828000 - * UMLS:C0224160 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Geniohyoid] + * UMLS:C0224160 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Geniohyoid ] * Wikipedia:Geniohyoid_muscle * http://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001665.md b/md/UBERON/65/UBERON_0001665.md index 4f3f370f03..d5c96ef2cd 100644 --- a/md/UBERON/65/UBERON_0001665.md +++ b/md/UBERON/65/UBERON_0001665.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001665 * *Label* = triceps surae - * *Definition* = The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5S2. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_surae_muscle] + * *Definition* = The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5S2. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_surae_muscle ] * *Comment* = A set of muscles in FMA, a single organ in MA ## Synonyms - * calf muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_surae_muscle] - * gastrosoleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_surae_muscle] - * gastrosoleus complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_surae_muscle] - * musculus triceps surae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Triceps_surae_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * calf muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_surae_muscle ] + * gastrosoleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_surae_muscle ] + * gastrosoleus complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_surae_muscle ] + * musculus triceps surae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Triceps_surae_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sural triceps ## Cross-references * FMA:51062 * MA:0002400 - * UMLS:C0224458 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Triceps_Surae] + * UMLS:C0224458 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Triceps_Surae ] * Wikipedia:Triceps_surae_muscle * http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001765.md b/md/UBERON/65/UBERON_0001765.md index 38e4d581fd..096dc5baf0 100644 --- a/md/UBERON/65/UBERON_0001765.md +++ b/md/UBERON/65/UBERON_0001765.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001765 * *Label* = mammary duct - * *Definition* = Epithelial tube that transports milk[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060603[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lactiferous_duct] + * *Definition* = Epithelial tube that transports milk[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060603, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lactiferous_duct ] * *Comment* = This structure regresses in most males ## Synonyms - * lactiferous duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58006] - * lactiferous gland duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lactiferous duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58006 ] + * lactiferous gland duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mammary gland duct - * ductus lactiferi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002845] - * ductus lactiferi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lactiferous_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * galactophorous duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lactiferous_duct] - * galactophorous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002845] - * lactiferous tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002845] - * mammilary duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lactiferous_duct] + * ductus lactiferi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002845 ] + * ductus lactiferi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lactiferous_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * galactophorous duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lactiferous_duct ] + * galactophorous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002845 ] + * lactiferous tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002845 ] + * mammilary duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lactiferous_duct ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:58006 * MA:0000791 * SCTID:361719004 - * UMLS:C0222613 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lactiferous_Duct] + * UMLS:C0222613 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lactiferous_Duct ] * Wikipedia:Lactiferous_duct * http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg * ncithesaurus:Lactiferous_Duct @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001865.md b/md/UBERON/65/UBERON_0001865.md index 488f200f3d..e45bf9767a 100644 --- a/md/UBERON/65/UBERON_0001865.md +++ b/md/UBERON/65/UBERON_0001865.md @@ -10,7 +10,7 @@ * cartilaginous external acoustic meatus * cartilaginous part of external acoustic meatus * external acoustic meatus cartilaginous part - * meatus acusticus externus cartilagineus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61289[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * meatus acusticus externus cartilagineus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61289, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0001965.md b/md/UBERON/65/UBERON_0001965.md index 4c7a1a486d..40527633c9 100644 --- a/md/UBERON/65/UBERON_0001965.md +++ b/md/UBERON/65/UBERON_0001965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001965 * *Label* = substantia nigra pars compacta - * *Definition* = Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_990] + * *Definition* = Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_990 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,15 +11,15 @@ * SNpc * compact part of substantia nigra * pars compacta - * pars compacta substantiae nigrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62907[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia nigra compact part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_990] - * substantia nigra compacta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_990] + * pars compacta substantiae nigrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62907, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia nigra compact part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_990 ] + * substantia nigra compacta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_990 ] * substantia nigra, compact part - * SNC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_990[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus substantiae nigrae, Pars compacta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars compacta of substantia nigra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537] - * substantia nigra, compact division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNC] - * substantia nigra, pars compacta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * SNC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_990, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus substantiae nigrae, Pars compacta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars compacta of substantia nigra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537 ] + * substantia nigra, compact division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNC ] + * substantia nigra, pars compacta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,9 +31,9 @@ * FMA:62907 * MA:0001064 * NIF_GrossAnatomy:birnlex_990 - * NeuroNames:537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_990] - * UMLS:C0175412 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_990] - * UMLS:C0175412 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pars_Compacta] + * NeuroNames:537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_990 ] + * UMLS:C0175412 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_990 ] + * UMLS:C0175412 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pars_Compacta ] * Wikipedia:Substantia_nigra_pars_compacta * ncithesaurus:Pars_Compacta @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002065.md b/md/UBERON/65/UBERON_0002065.md index f41b8bcb66..9138cefd18 100644 --- a/md/UBERON/65/UBERON_0002065.md +++ b/md/UBERON/65/UBERON_0002065.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002065 * *Label* = posterior cardinal vein - * *Definition* = One of two paired cardinal veins that return blood from the body of the embryo[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cardinal_vein] + * *Definition* = One of two paired cardinal veins that return blood from the body of the embryo[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cardinal_vein ] * *Comment* = ...join with the corresponding right and left cardinal veins to form the left common cardinal veins, which empty in the sinus venosus. Most of the posterior cardinal veins regress, what remains of them forms the renal segment of the inferior vena cava and the common iliac veins. Later in the development stages, the posterior cardinal veins are replaced by the subcardinal and supracardinal veins. The subcardinal veins form part of the inferior vena cava, renal veins and gonadal veins. The supracardinal veins form part of the inferior vena cava, the intercostal veins, hemiazygos vein and azygos vein[WP] ## Synonyms @@ -11,8 +11,8 @@ * PCV * axial vein * caudal cardinal veins - * inferior cardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.embryology.ch/anglais/pcardio/venen01.html] - * postcardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70314[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cardinal_vein] + * inferior cardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.embryology.ch/anglais/pcardio/venen01.html ] + * postcardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70314, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cardinal_vein ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:70314 * SCTID:308781005 * TAO:0000477 - * UMLS:C0231087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Cardinal_Vein] + * UMLS:C0231087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Cardinal_Vein ] * VHOG:0000111 * Wikipedia:Posterior_cardinal_vein * XAO:0000241 @@ -57,8 +57,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of cardinal system (TAO:0000096)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002165.md b/md/UBERON/65/UBERON_0002165.md index f75273a175..8b0bc60d99 100644 --- a/md/UBERON/65/UBERON_0002165.md +++ b/md/UBERON/65/UBERON_0002165.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002165 * *Label* = endocardium - * *Definition* = The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7280[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endocardium] + * *Definition* = The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7280, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endocardium ] * *Comment* = fixed in GO to reflect FMA. See email to David/Varsha June 18 2010 ## Synonyms - * endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17868] + * endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17868 ] * heart endocardium - * heart endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000084] + * heart endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000084 ] ## Cross-references @@ -29,7 +29,7 @@ * OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw * SCTID:362013006 * TAO:0001320 - * UMLS:C0014124 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endocardium] + * UMLS:C0014124 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endocardium ] * VHOG:0000084 * Wikipedia:Endocardium * XAO:0000066 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006225 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002265.md b/md/UBERON/65/UBERON_0002265.md index b727c889ba..684c140c93 100644 --- a/md/UBERON/65/UBERON_0002265.md +++ b/md/UBERON/65/UBERON_0002265.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002265 * *Label* = olfactory tract - * *Definition* = White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1663[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_tract] + * *Definition* = White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1663, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_tract ] * *Comment* = AO notes: sources differ as to whether this is part of the bulb (BTO), or cortex (MA). We represent this as the connection between the two, and is thus entirely part of neither, yet overlaps both. Note that the NIF class has been retired ## Synonyms - * olfactory peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003647] - * olfactory stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:283] - * pedunclulus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:283[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:283[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003647] - * tractus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * olfactory peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003647 ] + * olfactory stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:283 ] + * pedunclulus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:283, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:283, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003647 ] + * tractus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,9 +22,9 @@ * FMA:77626 * MA:0000975 * NIF_GrossAnatomy:birnlex_1663 - * NeuroNames:283 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1663] + * NeuroNames:283 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1663 ] * SCTID:362356008 - * UMLS:C0162435 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Tract] + * UMLS:C0162435 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Tract ] * Wikipedia:Olfactory_tract * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png * ncithesaurus:Olfactory_Tract @@ -38,12 +38,12 @@ * [tract of brain](../../UBERON/02/UBERON_0007702.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter of telencephalon](../../UBERON/99/UBERON_0011299.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory cortex](../../UBERON/94/UBERON_0002894.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory cortex](../../UBERON/94/UBERON_0002894.md) and [tract of brain](../../UBERON/02/UBERON_0007702.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The olfactory tract is a bundle of axons connecting the mitral and tufted cells of the olfactory bulb to several target regions in the brain, including piriform cortex, amygdala, and entorhinal cortex. It is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two stri, a medial olfactory stria and a lateral olfactory stria.[Wikipedia]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tract of brain which is continuous with olfactory bulb and the cerebral cortex.[FMA] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = White matter tract that contains projections from the olfactory bulb to the olfactory cortex (Maryann Martone) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002365.md b/md/UBERON/65/UBERON_0002365.md index 71ff9afbff..ce52a0dd4c 100644 --- a/md/UBERON/65/UBERON_0002365.md +++ b/md/UBERON/65/UBERON_0002365.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002365 * *Label* = exocrine gland - * *Definition* = A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exocrine_gland] + * *Definition* = A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exocrine_gland ] * *Comment* = Editor's note: Currently this is logically defined by the system it belongs to, but a better system may be base this on presence/absence of ducts. However, the dual nature of the liver should be taken into consideration here. Consider adding subclasses ## Synonyms - * ducted gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000097] - * glandula exocrina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Exocrine_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ducted gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000097 ] + * glandula exocrina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Exocrine_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * GAID:34 * MA:0002564 * MESH:A10.336 - * UMLS:C0015282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Exocrine_Gland] + * UMLS:C0015282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Exocrine_Gland ] * Wikipedia:Exocrine_gland * ncithesaurus:Exocrine_Gland @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [exocrine system](../../UBERON/30/UBERON_0002330.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002465.md b/md/UBERON/65/UBERON_0002465.md index 9634dc22f2..593a05741a 100644 --- a/md/UBERON/65/UBERON_0002465.md +++ b/md/UBERON/65/UBERON_0002465.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002465 * *Label* = lymphoid system - * *Definition* = The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphoid_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376] + * *Definition* = The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphoid_system, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376 ] * *Comment* = We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments. ## Synonyms - * lymphatic system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000385] - * lymphatic circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * systema lymphoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphoid_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lymphatic system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000385 ] + * lymphatic circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * systema lymphoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphoid_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA * SCTID:362589007 * TAO:0000385 - * UMLS:C0024235 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphatic_System] + * UMLS:C0024235 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphatic_System ] * VHOG:0000842 * Wikipedia:Lymphoid_system * XAO:0003199 @@ -57,8 +57,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = lymphoid * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002096 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002565.md b/md/UBERON/65/UBERON_0002565.md index 86aa98cf6d..a0fe7fbb7f 100644 --- a/md/UBERON/65/UBERON_0002565.md +++ b/md/UBERON/65/UBERON_0002565.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002565 * *Label* = olivary pretectal nucleus - * *Definition* = The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_pretectal_nucleus] + * *Definition* = The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_pretectal_nucleus ] ## Synonyms - * anterior pretectal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72405] - * nucleus pretectalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72405[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olivary nucleus of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72405] - * pretectal olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72405] - * nucleus olivaris colliculi superioris (Fuse) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:472[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus olivaris corporis quadrigemini anterioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:472[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus olivaris mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:472[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus olivaris pretectalis of Fuse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:472[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus praetectalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:472[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior pretectal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72405 ] + * nucleus pretectalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72405, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olivary nucleus of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72405 ] + * pretectal olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72405 ] + * nucleus olivaris colliculi superioris (Fuse) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:472, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus olivaris corporis quadrigemini anterioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:472, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus olivaris mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:472, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus olivaris pretectalis of Fuse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:472, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus praetectalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:472, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,8 @@ * BM:MB-Tec-OPT * FMA:72405 * NIF_GrossAnatomy:birnlex_1037 - * NeuroNames:472 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1037] - * UMLS:C0175359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1037] + * NeuroNames:472 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1037 ] + * UMLS:C0175359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1037 ] * Wikipedia:Olivary_pretectal_nucleus ## Subsets @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002665.md b/md/UBERON/65/UBERON_0002665.md index c45edd1aed..a3ddb6991f 100644 --- a/md/UBERON/65/UBERON_0002665.md +++ b/md/UBERON/65/UBERON_0002665.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002665 * *Label* = supracallosal gyrus - * *Definition* = The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supracallosal_gyrus] + * *Definition* = The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supracallosal_gyrus ] ## Synonyms - * supracommissural hippocampal rudiment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61920] - * supracommissural hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61920] - * gyrus supracallosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:172[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hippocampus supracommissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:172[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * indusium griseum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003738] + * supracommissural hippocampal rudiment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61920 ] + * supracommissural hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61920 ] + * gyrus supracallosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:172, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hippocampus supracommissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:172, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * indusium griseum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003738 ] ## Cross-references @@ -21,9 +21,9 @@ * BTO:0003738 * FMA:61920 * NIF_GrossAnatomy:birnlex_1316 - * NeuroNames:172 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1316] + * NeuroNames:172 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1316 ] * SCTID:369231001 - * UMLS:C0152333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1316] + * UMLS:C0152333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1316 ] * Wikipedia:Supracallosal_gyrus ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002765.md b/md/UBERON/65/UBERON_0002765.md index 35145e0be7..03de46be25 100644 --- a/md/UBERON/65/UBERON_0002765.md +++ b/md/UBERON/65/UBERON_0002765.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002765 * *Label* = lateral medullary lamina of globus pallidus - * *Definition* = The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234] + * *Definition* = The lateral medullary lamina is a thin white structure located in the basal ganglia of the primate brain. Bounded laterally by the putamen and medially by the globus pallidus, it is defined on the basis of Nissl or myelin stain ( Carpenter-1983 ). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234 ] ## Synonyms - * external medulary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * external medulary lamina of lentiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * external medullary lamina of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * external medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * external medullary lamina of lentiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * lamina medullaris externa corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris lateralis corporis striati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral medulary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * lateral medulary stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * lateral medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * lateral medullary lamina of corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * lateral medullary lamina of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * lateral medullary lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * lateral medullary stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * medulary lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * outer medulary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1634] - * outer medullary lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62469] - * globus pallidus, lamina medullaris externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamella pallidi externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris externa pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina pallidi externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:234[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral medullary lamina of the globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:lml] + * external medulary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * external medulary lamina of lentiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * external medullary lamina of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * external medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * external medullary lamina of lentiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * lamina medullaris externa corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris lateralis corporis striati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral medulary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * lateral medulary stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * lateral medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * lateral medullary lamina of corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * lateral medullary lamina of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * lateral medullary lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * lateral medullary stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * medulary lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * outer medulary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1634 ] + * outer medullary lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62469 ] + * globus pallidus, lamina medullaris externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamella pallidi externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris externa pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina pallidi externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:234, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral medullary lamina of the globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:lml ] ## Cross-references * BAMS:lml * FMA:62469 * NIF_GrossAnatomy:birnlex_1634 - * NeuroNames:234 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1634] + * NeuroNames:234 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1634 ] * SCTID:369204004 - * UMLS:C0152339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1634] + * UMLS:C0152339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1634 ] ## Subsets @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002865.md b/md/UBERON/65/UBERON_0002865.md index 1f01709565..a0d0fb5bf3 100644 --- a/md/UBERON/65/UBERON_0002865.md +++ b/md/UBERON/65/UBERON_0002865.md @@ -6,40 +6,40 @@ ## Synonyms - * arcuate hypothalamic nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arcuate nucleus of hypothalamus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arcuate nucleus-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72609] - * arcuate nucleus-2 of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arcuate periventricular nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * infundibular hypothalamic nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * infundibular nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * infundibular periventricular nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medial arcuate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72609] - * medulla arcuate hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla arcuate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla arcuate nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla arcuate nucleus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla arcuate periventricular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla infundibular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla infundibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * medulla infundibular periventricular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nucleus arciformis pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2635] - * ArcM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2635[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * arcuate hypothalamic nucleus medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ArcM] - * arcuate nucleus (medulla) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:775] - * arcuate nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:775] - * arcuate nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ArcM] - * nuclei arcuati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:775[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus arcuatus myelencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:775[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus arcuatus pyramidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:775[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arcuate hypothalamic nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arcuate nucleus of hypothalamus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arcuate nucleus-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72609 ] + * arcuate nucleus-2 of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arcuate periventricular nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * infundibular hypothalamic nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * infundibular nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * infundibular periventricular nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medial arcuate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72609 ] + * medulla arcuate hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla arcuate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla arcuate nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla arcuate nucleus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla arcuate periventricular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla infundibular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla infundibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * medulla infundibular periventricular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nucleus arciformis pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2635 ] + * ArcM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2635, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * arcuate hypothalamic nucleus medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ArcM ] + * arcuate nucleus (medulla) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:775 ] + * arcuate nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:775 ] + * arcuate nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ArcM ] + * nuclei arcuati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:775, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus arcuatus myelencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:775, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus arcuatus pyramidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:775, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ArcM * FMA:72609 * NIF_GrossAnatomy:birnlex_2635 - * NeuroNames:775 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2635] - * UMLS:C0228544 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2635] + * NeuroNames:775 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2635 ] + * UMLS:C0228544 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2635 ] ## Subsets @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0002965.md b/md/UBERON/65/UBERON_0002965.md index 50185423b6..f43e174167 100644 --- a/md/UBERON/65/UBERON_0002965.md +++ b/md/UBERON/65/UBERON_0002965.md @@ -6,18 +6,18 @@ ## Synonyms - * nuclei intralaminares rostrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_794] - * rostral intralaminar nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62164] - * rostral intralaminar nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62164] - * RIL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_794[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * nuclei intralaminares rostrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_794 ] + * rostral intralaminar nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62164 ] + * rostral intralaminar nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62164 ] + * RIL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_794, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:RIL * FMA:62164 * NIF_GrossAnatomy:birnlex_794 - * NeuroNames:318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_794] - * UMLS:C0175263 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_794] + * NeuroNames:318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_794 ] + * UMLS:C0175263 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_794 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003065.md b/md/UBERON/65/UBERON_0003065.md index 7469802faa..c0cb57e952 100644 --- a/md/UBERON/65/UBERON_0003065.md +++ b/md/UBERON/65/UBERON_0003065.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003065 * *Label* = ciliary marginal zone - * *Definition* = Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth.[Wehman et al, 2005] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * peripheral growth zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001289] + * peripheral growth zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001289 ] * CMZ * circumferential germinal zone @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The retina of all vertebrates develops via similar mechanisms. Toward the end of retinal histogenesis, proliferating progenitors and newly generated cells are confined to peripheral regions of the retina. In fish and amphibians, this region is maintained after embryonic development and becomes the CMZ (ciliary margin zone). A CMZ exists in birds but compared to that of fish and amphibians this region produces much less new retina as the globe of the eye expands postnatally. At least some of the molecular mechanisms that regulate the addition of new cells in this zone appear to have been conserved from fish to birds.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003165.md b/md/UBERON/65/UBERON_0003165.md index 1c47d8dba9..6a1ed4b29b 100644 --- a/md/UBERON/65/UBERON_0003165.md +++ b/md/UBERON/65/UBERON_0003165.md @@ -7,7 +7,7 @@ ## Synonyms - * atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004526] + * atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004526 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004526 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000201 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003165 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_0003265.md b/md/UBERON/65/UBERON_0003265.md index 6dd485dde2..4e283a5720 100644 --- a/md/UBERON/65/UBERON_0003265.md +++ b/md/UBERON/65/UBERON_0003265.md @@ -7,11 +7,11 @@ ## Synonyms - * chorion mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chorion mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000247] - * chorionic mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003245] + * chorion mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chorion mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000247 ] + * chorionic mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003245 ] * mesenchyme of chorion - * mesenchyme of chorion (vertebrates) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of chorion (vertebrates) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chorion](../../UBERON/24/UBERON_0003124.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003423 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003365.md b/md/UBERON/65/UBERON_0003365.md index 1e97b3705f..42ec2435dd 100644 --- a/md/UBERON/65/UBERON_0003365.md +++ b/md/UBERON/65/UBERON_0003365.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003365 * *Label* = epithelium of left lung - * *Definition* = An epithelium that is part of a left lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a left lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003465.md b/md/UBERON/65/UBERON_0003465.md index c2f5c6c12f..02d4a613a2 100644 --- a/md/UBERON/65/UBERON_0003465.md +++ b/md/UBERON/65/UBERON_0003465.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003465 * *Label* = obsolete chondrocranium bone - * *Definition* = A bone that is part of a chondrocranium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * *Definition* = A bone that is part of a chondrocranium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * *Comment* = Made obsolete because it conflated neuro and chondro-cranium; also ZFA:0001544 equivalent was made obsolete. ## Synonyms @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011164 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004762 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003465 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_0003565.md b/md/UBERON/65/UBERON_0003565.md index 3816d540a7..54cfe9dbad 100644 --- a/md/UBERON/65/UBERON_0003565.md +++ b/md/UBERON/65/UBERON_0003565.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003565 * *Label* = hindbrain dura mater - * *Definition* = A dura mater that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dura mater of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dura mater of neuraxis of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindbrain dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhombencephalon dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000409] + * dura mater of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dura mater of neuraxis of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindbrain dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhombencephalon dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000409 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dura mater that is part of the hindbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003665.md b/md/UBERON/65/UBERON_0003665.md index f104d86062..e51c488cf7 100644 --- a/md/UBERON/65/UBERON_0003665.md +++ b/md/UBERON/65/UBERON_0003665.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003665 * *Label* = tail muscle - * *Definition* = A muscle organ that attaches to a tail vertebra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that attaches to a tail vertebra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: the BTO class may possibly refer to an invertebrate structure ## Synonyms * caudal muscle - * muscle organ of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tail muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tail muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,20 +27,21 @@ ## Superclasses * [muscle of vertebral column](../../UBERON/18/UBERON_0004518.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) * [attaches_to](../../RO/71/RO_0002371.md) some [caudal vertebra](../../UBERON/95/UBERON_0001095.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [caudal vertebra](../../UBERON/95/UBERON_0001095.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003865.md b/md/UBERON/65/UBERON_0003865.md index 4a0f55e0d2..083ebedd30 100644 --- a/md/UBERON/65/UBERON_0003865.md +++ b/md/UBERON/65/UBERON_0003865.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003865 * *Label* = distal phalanx of manus - * *Definition* = A distal phalanx that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This is typically proximally connected to the middle phalanx of manus, except in some cases such as the human thumb, where it connects to the proximal phalanx. It always connects to some phalanx, by definition ## Synonyms * distal manual phalanx - * distal phalanx of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75818] + * distal phalanx of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75818 ] * distal phalanx of hand * distal phalanx of manual digit - * hand distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001388] - * terminal phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * ungual phalanx of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=67679] + * hand distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001388 ] + * terminal phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * ungual phalanx of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=67679 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0001388 * SCTID:182001007 * SCTID:361782004 - * UMLS:C1269782 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Distal_Phalanx_of_Hand] + * UMLS:C1269782 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Distal_Phalanx_of_Hand ] * ncithesaurus:Distal_Phalanx_of_Hand ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0003965.md b/md/UBERON/65/UBERON_0003965.md index ae25e0f2bf..f4bff90263 100644 --- a/md/UBERON/65/UBERON_0003965.md +++ b/md/UBERON/65/UBERON_0003965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003965 * *Label* = sympathetic afferent fiber - * *Definition* = the fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008319] + * *Definition* = the fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008319 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004265.md b/md/UBERON/65/UBERON_0004265.md index f29fb7c5b7..e0bc523325 100644 --- a/md/UBERON/65/UBERON_0004265.md +++ b/md/UBERON/65/UBERON_0004265.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004265 * *Label* = outflow tract myocardium - * *Definition* = A myocardium that is part of a outflow tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A myocardium that is part of a outflow tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outflow tract muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac muscle of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outflow tract muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium](../../UBERON/49/UBERON_0002349.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) (theme) is how the vertebrate cardiovascular system differs from that of the presumptive evolutionary chordate ancestor. (...) At best we can tell there are two essential new ingredients: (1) vertebrates all have a continuous endothelial lining to the heart and vessels and (2) vertebrates have developed a second chamber in the heart, one designed for generating high systemic blood pressure.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004365.md b/md/UBERON/65/UBERON_0004365.md index 79860400aa..0a890c9c5e 100644 --- a/md/UBERON/65/UBERON_0004365.md +++ b/md/UBERON/65/UBERON_0004365.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004365 * *Label* = vitelline blood vessel - * *Definition* = blood vesself of the yolk sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001719] + * *Definition* = blood vesself of the yolk sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001719 ] ## Synonyms @@ -18,19 +18,20 @@ * [blood vessel](../../UBERON/81/UBERON_0001981.md) * [part_of](../../BFO/50/BFO_0000050.md) some [vitelline vasculature](../../UBERON/74/UBERON_0004374.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004465.md b/md/UBERON/65/UBERON_0004465.md index 9d19b2cb03..51df493fc9 100644 --- a/md/UBERON/65/UBERON_0004465.md +++ b/md/UBERON/65/UBERON_0004465.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004465 * *Label* = musculature of neck - * *Definition* = Any collection of muscles that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cervical muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000091] - * muscle group of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290] - * muscles of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290] - * musculi cervicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neck musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290] - * set of muscles of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71290] + * cervical muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000091 ] + * muscle group of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290 ] + * muscles of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290 ] + * musculi cervicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculi colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neck musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290 ] + * set of muscles of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71290 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004665.md b/md/UBERON/65/UBERON_0004665.md index b8ef850d86..383451bc0a 100644 --- a/md/UBERON/65/UBERON_0004665.md +++ b/md/UBERON/65/UBERON_0004665.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004665 * *Label* = seminal vesicle muscle layer - * *Definition* = A portion of muscle tissue that is part of a seminal vesicle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of muscle tissue that is part of a seminal vesicle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle layer of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19404] - * muscular coat of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19404] - * muscular layer of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19404] - * tunica muscularis (Vesicula seminalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19404] - * tunica muscularis glandulae vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19404[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscle layer of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19404 ] + * muscular coat of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19404 ] + * muscular layer of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19404 ] + * tunica muscularis (Vesicula seminalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19404 ] + * tunica muscularis glandulae vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19404, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004765.md b/md/UBERON/65/UBERON_0004765.md index 158bf38efc..200e6b6e7b 100644 --- a/md/UBERON/65/UBERON_0004765.md +++ b/md/UBERON/65/UBERON_0004765.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004765 * *Label* = skeletal element - * *Definition* = Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = TODO - add more general class for other kinds of mineralized tissue ## Synonyms @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0004865.md b/md/UBERON/65/UBERON_0004865.md index 717de517ef..fbbbadbb36 100644 --- a/md/UBERON/65/UBERON_0004865.md +++ b/md/UBERON/65/UBERON_0004865.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004865 * *Label* = actinopterygian parietal bone - * *Definition* = Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000486[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000486, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms * actinopterygian parietal - * frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52734] - * parietal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * parietals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000486[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * post parietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000486] + * frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52734 ] + * parietal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * parietals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000486, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * post parietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000486 ] ## Cross-references @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The homologization of cranial bones of actinopterygians with those of sarcopterygians based on the bone names established in human anatomy is favored in order to permit the building of phylogenetic relationship schemes beyond the taxonomic boundaries of osteichthyans (including tetrapods). (...) In actinopterygians, the terms parietal and postparietal bones have to replace the commonly used terms 'frontal' and 'parietal' bones for the two paired bones on the skull roof.[well established][VHOG] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The parietal is a flat, commonly squarish or rectangular bone.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005065.md b/md/UBERON/65/UBERON_0005065.md index 761c4f9111..4df097be5e 100644 --- a/md/UBERON/65/UBERON_0005065.md +++ b/md/UBERON/65/UBERON_0005065.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005065 * *Label* = right ventricular compact myocardium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003226] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003226 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compact layer of ventricle](../../UBERON/27/UBERON_0004127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005265.md b/md/UBERON/65/UBERON_0005265.md index 157aa515cd..780fb9cdc6 100644 --- a/md/UBERON/65/UBERON_0005265.md +++ b/md/UBERON/65/UBERON_0005265.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0001211 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005265 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_0005465.md b/md/UBERON/65/UBERON_0005465.md index 71ebf6ae03..19a9cbdf38 100644 --- a/md/UBERON/65/UBERON_0005465.md +++ b/md/UBERON/65/UBERON_0005465.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005465 * *Label* = obturator nerve - * *Definition* = The obturator nerve arises from the ventral divisions of the second, third, and fourth lumbar nerves; the branch from the third is the largest, while that from the second is often very small. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_nerve] + * *Definition* = The obturator nerve arises from the ventral divisions of the second, third, and fourth lumbar nerves; the branch from the third is the largest, while that from the second is often very small. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_nerve ] ## Synonyms - * nervus obturatorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus obturatorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:16487 * MESH:A08.800.800.720.450.600 * SCTID:181052006 - * UMLS:C0028783 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Nerve] + * UMLS:C0028783 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Nerve ] * Wikipedia:Obturator_nerve * http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray344.png * ncithesaurus:Obturator_Nerve @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005565.md b/md/UBERON/65/UBERON_0005565.md index 7b9c5d3493..e1f6fc81da 100644 --- a/md/UBERON/65/UBERON_0005565.md +++ b/md/UBERON/65/UBERON_0005565.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005565 * *Label* = facio-acoustic neural crest - * *Definition* = Cranial neural crest that gives rise to the facio-acoustic ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000762] + * *Definition* = Cranial neural crest that gives rise to the facio-acoustic ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000762 ] ## Synonyms - * facio acoustic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000762] + * facio acoustic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000762 ] ## Cross-references @@ -39,8 +39,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005665.md b/md/UBERON/65/UBERON_0005665.md index fcd56cfa69..d62e731f65 100644 --- a/md/UBERON/65/UBERON_0005665.md +++ b/md/UBERON/65/UBERON_0005665.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005665 * *Label* = 3rd arch endoderm - * *Definition* = An endoderm that is part of a pharyngeal arch 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a pharyngeal arch 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd pharyngeal arch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001081] + * 3rd pharyngeal arch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001081 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005865.md b/md/UBERON/65/UBERON_0005865.md index ba62a36368..02c427ade4 100644 --- a/md/UBERON/65/UBERON_0005865.md +++ b/md/UBERON/65/UBERON_0005865.md @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [muscle precursor cell](../../CL/80/CL_0000680.md) and [developing mesenchymal condensation](../../UBERON/56/UBERON_0005856.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008714 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0005965.md b/md/UBERON/65/UBERON_0005965.md index a91b9cb9d7..b9e497dae0 100644 --- a/md/UBERON/65/UBERON_0005965.md +++ b/md/UBERON/65/UBERON_0005965.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005965 * *Label* = outflow part of right atrium - * *Definition* = Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9550[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9550, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms - * main part of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9550] - * outflow tract of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9550] + * main part of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9550 ] + * outflow tract of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9550 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract of atrium](../../UBERON/46/UBERON_0005946.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006065.md b/md/UBERON/65/UBERON_0006065.md index 796b8ad85c..9eae02ebef 100644 --- a/md/UBERON/65/UBERON_0006065.md +++ b/md/UBERON/65/UBERON_0006065.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006065 * *Label* = hemal arch - * *Definition* = Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000726[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Haemal_arch[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000726, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haemal_arch, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: fish, most reptiles, some birds, and some mammals with long tails.[WP] ## Synonyms - * haemal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000726[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000519] - * ventral arcocentrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000519] - * chevron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] - * ventral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000726] + * haemal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000726, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000519 ] + * ventral arcocentrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000519 ] + * chevron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] + * ventral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000726 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from basiventral (TAO:0001361)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006165.md b/md/UBERON/65/UBERON_0006165.md index f31a0698ec..c683ede83c 100644 --- a/md/UBERON/65/UBERON_0006165.md +++ b/md/UBERON/65/UBERON_0006165.md @@ -6,7 +6,7 @@ ## Synonyms - * median dorsal digital artery for digit 01 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001955] + * median dorsal digital artery for digit 01 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001955 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006265.md b/md/UBERON/65/UBERON_0006265.md index a81e47e61e..4c37eba500 100644 --- a/md/UBERON/65/UBERON_0006265.md +++ b/md/UBERON/65/UBERON_0006265.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006265 * *Label* = mural trophectoderm - * *Definition* = Trophectoderm that surrounds blastocyst cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16341078] + * *Definition* = Trophectoderm that surrounds blastocyst cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16341078 ] ## Synonyms - * mural trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000597] + * mural trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000597 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the trophectoderm which surrounds the blastocoelic cavity. [See_Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.10][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the trophoblast develops rapidly so that contact may be made with the maternal uterine tissues when conditions are appropriate. We have here an excellent example of an embryonic adaptation, the development of a structure never present in either adult or embryo of 'lower' vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006465.md b/md/UBERON/65/UBERON_0006465.md index 43210b9c38..ef9a2cb50a 100644 --- a/md/UBERON/65/UBERON_0006465.md +++ b/md/UBERON/65/UBERON_0006465.md @@ -6,16 +6,16 @@ ## Synonyms - * T9 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1584] - * ninth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1584] - * t9 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71175] + * T9 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1584 ] + * ninth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1584 ] + * t9 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71175 ] ## Cross-references * FMA:71175 * NIF_GrossAnatomy:birnlex_1584 * SCTID:278771004 - * UMLS:C0457867 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1584] + * UMLS:C0457867 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1584 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006565.md b/md/UBERON/65/UBERON_0006565.md index 6fcbdca7f0..d04619906b 100644 --- a/md/UBERON/65/UBERON_0006565.md +++ b/md/UBERON/65/UBERON_0006565.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006565 * *Label* = female urethral meatus - * *Definition* = A urethral meatus that is part of a female urethra[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_urethral_orifice_%28female%29] + * *Definition* = A urethral meatus that is part of a female urethra[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_urethral_orifice_%28female%29 ] ## Synonyms - * external orifice of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85266] - * external urethral orifice (female) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85266] - * female urethral meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85266] - * ostium urethrae externum (urethra feminina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85266[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * external orifice of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85266 ] + * external urethral orifice (female) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85266 ] + * female urethral meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85266 ] + * ostium urethrae externum (urethra feminina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85266, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [urethral meatus](../../UBERON/40/UBERON_0012240.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = he external urethral orifice (urinary meatus) is the external opening of the urethra, from which urine is ejected during urination. It is placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina; it usually assumes the form of a short, sagittal cleft with slightly raised margins. To its left and right are the openings of the Skene's ducts.. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006665.md b/md/UBERON/65/UBERON_0006665.md index 9591519252..741bd4e8da 100644 --- a/md/UBERON/65/UBERON_0006665.md +++ b/md/UBERON/65/UBERON_0006665.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006665 * *Label* = accessory hemiazygos vein - * *Definition* = The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_hemiazygos_vein] + * *Definition* = The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_hemiazygos_vein ] * *Comment* = todo - add superclass ## Synonyms - * Accessory hemi-azygos vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5011] - * Superior hemi-azygos vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5011] - * Vena azygos accessoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5011] - * vena hemiazygos accessoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5011[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena hemiazygos accessoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Accessory_hemiazygos_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Accessory hemi-azygos vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5011 ] + * Superior hemi-azygos vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5011 ] + * Vena azygos accessoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5011 ] + * vena hemiazygos accessoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5011, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena hemiazygos accessoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Accessory_hemiazygos_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006765.md b/md/UBERON/65/UBERON_0006765.md index 8afd9e8c1e..6f6cd0b620 100644 --- a/md/UBERON/65/UBERON_0006765.md +++ b/md/UBERON/65/UBERON_0006765.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006865.md b/md/UBERON/65/UBERON_0006865.md index 065927011b..3ce06c520d 100644 --- a/md/UBERON/65/UBERON_0006865.md +++ b/md/UBERON/65/UBERON_0006865.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006865 * *Label* = metaphysis of femur - * *Definition* = A metaphysis that is part of a femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metaphysis that is part of a femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * femoral metaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32875] + * femoral metaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32875 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metaphysis](../../UBERON/38/UBERON_0001438.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0006965.md b/md/UBERON/65/UBERON_0006965.md index fa063e6773..43d7f58e6b 100644 --- a/md/UBERON/65/UBERON_0006965.md +++ b/md/UBERON/65/UBERON_0006965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006965 * *Label* = vascular cord - * *Definition* = The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072360[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005077] + * *Definition* = The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072360, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005077 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0007165.md b/md/UBERON/65/UBERON_0007165.md index 25083dd501..ccb0006427 100644 --- a/md/UBERON/65/UBERON_0007165.md +++ b/md/UBERON/65/UBERON_0007165.md @@ -6,7 +6,7 @@ ## Synonyms - * superior radioulnar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38860] + * superior radioulnar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38860 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0007265.md b/md/UBERON/65/UBERON_0007265.md index 00b17ac9c7..df5b4d1b84 100644 --- a/md/UBERON/65/UBERON_0007265.md +++ b/md/UBERON/65/UBERON_0007265.md @@ -6,14 +6,14 @@ ## Synonyms - * C2 disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * C2 intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * intervertebral disc of cervical vertebra 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * intervertebral disc of second cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * intervertebral disk of cervical vertebra 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * intervertebral disk of second cervical vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * intervertebral disk, C2-C3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] - * second cervical intervertebral disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25058] + * C2 disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * C2 intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * intervertebral disc of cervical vertebra 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * intervertebral disc of second cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * intervertebral disk of cervical vertebra 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * intervertebral disk of second cervical vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * intervertebral disk, C2-C3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] + * second cervical intervertebral disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25058 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [mammalian cervical vertebra 3](../../UBERON/12/UBERON_0004612.md) and [connects](../../ts/core#connects.md) some [vertebral bone 2](../../UBERON/93/UBERON_0001093.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0007365.md b/md/UBERON/65/UBERON_0007365.md index 6d9e6202b6..2631b2a04f 100644 --- a/md/UBERON/65/UBERON_0007365.md +++ b/md/UBERON/65/UBERON_0007365.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007365 * *Label* = rumen - * *Definition* = The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.869.804[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rumen] + * *Definition* = The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.869.804, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rumen ] * *Comment* = Structure notes: There is no muscularis mucosae in the rumen ## Synonyms - * paunch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001194] + * paunch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001194 ] ## Cross-references @@ -16,7 +16,7 @@ * GAID:1244 * MESH:A13.869.804 * SCTID:45138000 - * UMLS:C0035946 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rumen] + * UMLS:C0035946 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rumen ] * Wikipedia:Rumen * http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png * ncithesaurus:Rumen @@ -39,8 +39,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ruminal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0008265.md b/md/UBERON/65/UBERON_0008265.md index fe921e312a..f134055c93 100644 --- a/md/UBERON/65/UBERON_0008265.md +++ b/md/UBERON/65/UBERON_0008265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008265 * *Label* = echinopluteus larva - * *Definition* = A planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html] + * *Definition* = A planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [echinopluteus larval stage](../../UBERON/64/UBERON_0008264.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0008465.md b/md/UBERON/65/UBERON_0008465.md index 8dba1f1f45..a3abd347a4 100644 --- a/md/UBERON/65/UBERON_0008465.md +++ b/md/UBERON/65/UBERON_0008465.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008465 * *Label* = abductor pollicis brevis muscle - * *Definition* = The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_brevis_muscle] + * *Definition* = The abductor pollicis brevis is a muscle in the manus that functions as an abductor of the thumb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_brevis_muscle ] ## Synonyms - * abductor brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_brevis_muscle] - * abductor pollicis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_brevis_muscle] - * musculus abductor pollicis brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abductor_pollicis_brevis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abductor brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_brevis_muscle ] + * abductor pollicis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_brevis_muscle ] + * musculus abductor pollicis brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abductor_pollicis_brevis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0009065.md b/md/UBERON/65/UBERON_0009065.md index 4afeca46dd..313444c3c3 100644 --- a/md/UBERON/65/UBERON_0009065.md +++ b/md/UBERON/65/UBERON_0009065.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0009565.md b/md/UBERON/65/UBERON_0009565.md index ab9b76e7d6..6a3e5f897e 100644 --- a/md/UBERON/65/UBERON_0009565.md +++ b/md/UBERON/65/UBERON_0009565.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009565 * *Label* = nail of manual digit - * *Definition* = A nail that is part of a manual digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54327] - * fingernail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54327] - * nail of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54327] - * nail plate of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54327] + * finger nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54327 ] + * fingernail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54327 ] + * nail of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54327 ] + * nail plate of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54327 ] ## Cross-references * FMA:54327 * SCTID:244197001 - * UMLS:C0222001 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fingernail] + * UMLS:C0222001 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fingernail ] * ncithesaurus:Fingernail ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0009865.md b/md/UBERON/65/UBERON_0009865.md index 8b57beabd6..af569490af 100644 --- a/md/UBERON/65/UBERON_0009865.md +++ b/md/UBERON/65/UBERON_0009865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009865 * *Label* = Hatschek's pit - * *Definition* = a deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hatschek's_pit] + * *Definition* = a deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hatschek's_pit ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0009965.md b/md/UBERON/65/UBERON_0009965.md index 0a9ee78571..f4186cc620 100644 --- a/md/UBERON/65/UBERON_0009965.md +++ b/md/UBERON/65/UBERON_0009965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009965 * *Label* = coxal gland - * *Definition* = a gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coxal_gland] + * *Definition* = a gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coxal_gland ] * *Comment* = Taxon notes: They are found in all arachnids (with the exception of some Acari), and in other chelicerates, such as horseshoe crabs. Homology: The coxal gland is thought to be homologous with the antennal gland of crustaceans. Editor note: cede this term to Arthropod AO ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010065.md b/md/UBERON/65/UBERON_0010065.md index c3d352bd93..9878799189 100644 --- a/md/UBERON/65/UBERON_0010065.md +++ b/md/UBERON/65/UBERON_0010065.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010165.md b/md/UBERON/65/UBERON_0010165.md index 35d485a818..f22a41b911 100644 --- a/md/UBERON/65/UBERON_0010165.md +++ b/md/UBERON/65/UBERON_0010165.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010165 * *Label* = collection of hair on face - * *Definition* = A collection of hairs that is part of a face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collection of hairs that is part of a face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * facial hairs set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70741] - * set of facial hairs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70741] + * facial hairs set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70741 ] + * set of facial hairs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70741 ] * facial hair ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hairs](../../UBERON/64/UBERON_0010164.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010265.md b/md/UBERON/65/UBERON_0010265.md index 44b710a702..cec54fa04a 100644 --- a/md/UBERON/65/UBERON_0010265.md +++ b/md/UBERON/65/UBERON_0010265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010265 * *Label* = mollusc hepatopancreas - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Digestive_system_of_gastropods#Hepatopancreas] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Digestive_system_of_gastropods#Hepatopancreas ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010365.md b/md/UBERON/65/UBERON_0010365.md index 2ef624edfb..0a2d9d6298 100644 --- a/md/UBERON/65/UBERON_0010365.md +++ b/md/UBERON/65/UBERON_0010365.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010365 * *Label* = odontoid tissue - * *Definition* = Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000063[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000063, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * odontogenic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * dental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * odontogenic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * dental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] * tooth tissue ## Cross-references - * UMLS:C1519551 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tooth_Tissue] + * UMLS:C1519551 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tooth_Tissue ] * VSAO:0000063 * XAO:0004046 * ZFA:0005623 @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [odontogenic papilla](../../UBERON/63/UBERON_0001763.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dermal skeleton](../../UBERON/64/UBERON_0010364.md) and [skeletal tissue](../../UBERON/55/UBERON_0004755.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010365 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010565.md b/md/UBERON/65/UBERON_0010565.md index ec79623a5f..ef2b22161b 100644 --- a/md/UBERON/65/UBERON_0010565.md +++ b/md/UBERON/65/UBERON_0010565.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010565 * *Label* = manual digit 1 metacarpus pre-cartilage condensation - * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 1 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000515] - * fore limb digit 1 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 1 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000515 ] + * fore limb digit 1 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal 1 pre-cartilage condensation - * hand digit 1 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 1 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1 mesenchyme](../../UBERON/64/UBERON_0010564.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0010865.md b/md/UBERON/65/UBERON_0010865.md index 8e5420c354..ae45b2357b 100644 --- a/md/UBERON/65/UBERON_0010865.md +++ b/md/UBERON/65/UBERON_0010865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010865 * *Label* = dactylopatagium medius - * *Definition* = A dactylopatagium that is connected_to a manual digit 3 and connected_to a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dactylopatagium that is connected_to a manual digit 3 and connected_to a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [dactylopatagium](../../UBERON/62/UBERON_0010862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011165.md b/md/UBERON/65/UBERON_0011165.md index b72a5f98f7..256e7727ae 100644 --- a/md/UBERON/65/UBERON_0011165.md +++ b/md/UBERON/65/UBERON_0011165.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011165 * *Label* = crico-esophageal tendon - * *Definition* = Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=90131] + * *Definition* = Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=90131 ] ## Synonyms * crico-oesophageal tendon * cricoesophageal tendon - * tendo cricoesophageus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/] - * Gillette suspensory ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/] - * suspensory ligament of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/] + * tendo cricoesophageus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/ ] + * Gillette suspensory ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/ ] + * suspensory ligament of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/ ] ## Cross-references * FMA:76887 * SCTID:322841005 - * UMLS:C0227182 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricoesophageal_Tendon] + * UMLS:C0227182 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricoesophageal_Tendon ] * ncithesaurus:Cricoesophageal_Tendon ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011265.md b/md/UBERON/65/UBERON_0011265.md index 95bce0b4e2..cf7591c8db 100644 --- a/md/UBERON/65/UBERON_0011265.md +++ b/md/UBERON/65/UBERON_0011265.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011265 * *Label* = carpometacarpal joint of digit 1 - * *Definition* = A carpometacarpal joint that connects to metacarpal 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint#Thumb] + * *Definition* = A carpometacarpal joint that connects to metacarpal 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint#Thumb ] * *Comment* = Taxon notes: In humans it connects the trapezium to the first metacarpal bone, plays an irreplaceable role in the normal functioning of the thumb. The most important joint connecting the wrist to the metacarpus, osteoarthritis of the TMC is a severely disabling condition; up to twenty times more common among old women than in average[WP] ## Synonyms - * carpometacarpal joint of pollex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35421] - * carpometacarpal joint of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35421] - * TMJ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint#Thumb[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * carpometacarpal joint of the thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint#Thumb] - * trapeziometacarpal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpometacarpal_joint#Thumb] + * carpometacarpal joint of pollex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35421 ] + * carpometacarpal joint of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35421 ] + * TMJ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint#Thumb, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * carpometacarpal joint of the thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint#Thumb ] + * trapeziometacarpal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpometacarpal_joint#Thumb ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [carpometacarpal joint](../../UBERON/19/UBERON_0011119.md) and [connects](../../ts/core#connects.md) some [metacarpal bone of digit 1](../../UBERON/45/UBERON_0003645.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011265 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011465.md b/md/UBERON/65/UBERON_0011465.md index b2532ac52e..b428192761 100644 --- a/md/UBERON/65/UBERON_0011465.md +++ b/md/UBERON/65/UBERON_0011465.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011465 * *Label* = longissimus atlantis muscle - * *Definition* = A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://de.wikipedia.org/wiki/Musculus_longissimus] + * *Definition* = A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://de.wikipedia.org/wiki/Musculus_longissimus ] * *Comment* = present in horses and dogs ## Synonyms - * longissimus atlantis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002335] + * longissimus atlantis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002335 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011565.md b/md/UBERON/65/UBERON_0011565.md index fd0f7a8948..9dea78fbce 100644 --- a/md/UBERON/65/UBERON_0011565.md +++ b/md/UBERON/65/UBERON_0011565.md @@ -8,8 +8,8 @@ * cavity of digestive tract * cavity of gastrointestinal tract - * gastrointestinal tract lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54364] - * lumen of gastrointestinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54364] + * gastrointestinal tract lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54364 ] + * lumen of gastrointestinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54364 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011565 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011665.md b/md/UBERON/65/UBERON_0011665.md index 6c31ada825..49ffc3a946 100644 --- a/md/UBERON/65/UBERON_0011665.md +++ b/md/UBERON/65/UBERON_0011665.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011665 * *Label* = carapace bone - * *Definition* = Fused dorsal element constituting the carapace of a turtle shell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Fused dorsal element constituting the carapace of a turtle shell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = The carapace contains a mix of dermal bone and rib cage ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011765.md b/md/UBERON/65/UBERON_0011765.md index 6b24b2c15b..265c3c6910 100644 --- a/md/UBERON/65/UBERON_0011765.md +++ b/md/UBERON/65/UBERON_0011765.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011765 * *Label* = jugular lymph sac - * *Definition* = Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001000] + * *Definition* = Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001000 ] ## Synonyms @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. [http://en.wikipedia.org/wiki/Lymphatic_system][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lymph hearts are pulsatile organs, present in lower vertebrates, that function to propel lymph into the venous system. Although they are absent in mammals, the initial veno-lymphatic plexus that forms during mammalian jugular lymph sac development has been described as the vestigial homologue of the nascent stage of ancestral anterior lymph hearts.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011865.md b/md/UBERON/65/UBERON_0011865.md index 6a952e4333..77897af854 100644 --- a/md/UBERON/65/UBERON_0011865.md +++ b/md/UBERON/65/UBERON_0011865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011865 * *Label* = corneal stroma collagen fibril - * *Definition* = the connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011650] + * *Definition* = the connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011650 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collagen fibril](../../UBERON/60/UBERON_0011860.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia propria of cornea](../../UBERON/77/UBERON_0001777.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011865 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0011965.md b/md/UBERON/65/UBERON_0011965.md index 2c93735bf6..13a6c2c206 100644 --- a/md/UBERON/65/UBERON_0011965.md +++ b/md/UBERON/65/UBERON_0011965.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011965 * *Label* = saddle joint - * *Definition* = In a saddle joint (sellar joint, articulation by reciprocal reception) the opposing surfaces are reciprocally concave-convex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saddle_joint] + * *Definition* = In a saddle joint (sellar joint, articulation by reciprocal reception) the opposing surfaces are reciprocally concave-convex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saddle_joint ] ## Synonyms - * sellar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saddle_joint] - * articulation by reciprocal reception [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saddle_joint] + * sellar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saddle_joint ] + * articulation by reciprocal reception [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saddle_joint ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011965 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0012065.md b/md/UBERON/65/UBERON_0012065.md index 1976092409..96fc60dfb9 100644 --- a/md/UBERON/65/UBERON_0012065.md +++ b/md/UBERON/65/UBERON_0012065.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012065 * *Label* = lobar bronchus of left lung upper lobe - * *Definition* = A lobar bronchus that is part of a upper lobe of left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a upper lobe of left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus of left upper lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7423] - * left superior lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7423] - * left upper lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7423] - * left upper lobe bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7423] + * bronchus of left upper lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7423 ] + * left superior lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7423 ] + * left upper lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7423 ] + * left upper lobe bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7423 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of left lung](../../UBERON/52/UBERON_0008952.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012065 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0012265.md b/md/UBERON/65/UBERON_0012265.md index 2f3963f0b0..6ab1d8b2c0 100644 --- a/md/UBERON/65/UBERON_0012265.md +++ b/md/UBERON/65/UBERON_0012265.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003652 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012265 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_0012465.md b/md/UBERON/65/UBERON_0012465.md index c22e308d4d..22bc4312ef 100644 --- a/md/UBERON/65/UBERON_0012465.md +++ b/md/UBERON/65/UBERON_0012465.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [terminal part of digestive tract](../../UBERON/66/UBERON_0006866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0013165.md b/md/UBERON/65/UBERON_0013165.md index 1b1e0f4807..7245c474dd 100644 --- a/md/UBERON/65/UBERON_0013165.md +++ b/md/UBERON/65/UBERON_0013165.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013165 * *Label* = epiglottic vallecula - * *Definition* = A depression in front of the epiglottis, in which food is temporarily gathered as the animal chews. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiglottic_vallecula] + * *Definition* = A depression in front of the epiglottis, in which food is temporarily gathered as the animal chews. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiglottic_vallecula ] ## Synonyms - * vallecula epiglottica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vallecula of epiglottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55037] + * vallecula epiglottica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vallecula of epiglottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55037 ] * vallecula ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of surface of viscerocranial mucosa, which is a depression located between the median and lateral glosso-epiglottic folds. Examples: There are only two instances, right and left epiglottic valleculas[FMA:55037]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013165 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0013765.md b/md/UBERON/65/UBERON_0013765.md index ee751af653..6fbe29d923 100644 --- a/md/UBERON/65/UBERON_0013765.md +++ b/md/UBERON/65/UBERON_0013765.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive system](../../UBERON/07/UBERON_0001007.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0014465.md b/md/UBERON/65/UBERON_0014465.md index 302bae733e..f94e9f81b4 100644 --- a/md/UBERON/65/UBERON_0014465.md +++ b/md/UBERON/65/UBERON_0014465.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014465 * *Label* = antorbital fenestra - * *Definition* = An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antorbital_fenestra] + * *Definition* = An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antorbital_fenestra ] ## Synonyms - * antorbital fenestrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * antorbital fenestrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014465 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0014665.md b/md/UBERON/65/UBERON_0014665.md index 2de38c8b4e..188089dddc 100644 --- a/md/UBERON/65/UBERON_0014665.md +++ b/md/UBERON/65/UBERON_0014665.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014665 * *Label* = nucleus preopticus - * *Definition* = The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003664] + * *Definition* = The nucleus preopticus (NPO) of the hypothalamus of common carp, is a homolog of the paraventricular nucleus of mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003664 ] ## Synonyms - * nucleus praeopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003664] + * nucleus praeopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003664 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014665 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_0014765.md b/md/UBERON/65/UBERON_0014765.md index 4c3e99cb42..b07f234170 100644 --- a/md/UBERON/65/UBERON_0014765.md +++ b/md/UBERON/65/UBERON_0014765.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014765 * *Label* = crus of diaphragm - * *Definition* = The crura of the diaphragm are tendinous structures that extend inferiorly from the diaphragm to attach to the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_diaphragm] + * *Definition* = The crura of the diaphragm are tendinous structures that extend inferiorly from the diaphragm to attach to the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_diaphragm ] ## Synonyms - * crura of the diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_diaphragm] - * crus of the diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_diaphragm] - * diaphragm crura [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * diaphragmatic crura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crus_of_diaphragm] + * crura of the diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_diaphragm ] + * crus of the diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_diaphragm ] + * diaphragm crura [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * diaphragmatic crura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crus_of_diaphragm ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014765 + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2000165.md b/md/UBERON/65/UBERON_2000165.md index 4cd6a3c04c..2bf62e71b0 100644 --- a/md/UBERON/65/UBERON_2000165.md +++ b/md/UBERON/65/UBERON_2000165.md @@ -6,7 +6,7 @@ ## Synonyms - * inferior lobes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * inferior lobes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2000265.md b/md/UBERON/65/UBERON_2000265.md index d89e032203..1a7c3288ca 100644 --- a/md/UBERON/65/UBERON_2000265.md +++ b/md/UBERON/65/UBERON_2000265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000265 * *Label* = presumptive dorsal mesoderm - * *Definition* = Portion of presumptive mesoderm fated to become dorsal mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000265] + * *Definition* = Portion of presumptive mesoderm fated to become dorsal mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000265 ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2000465.md b/md/UBERON/65/UBERON_2000465.md index 28bbde10ed..05e3628466 100644 --- a/md/UBERON/65/UBERON_2000465.md +++ b/md/UBERON/65/UBERON_2000465.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2000865.md b/md/UBERON/65/UBERON_2000865.md index 1431aebdb2..c313a0292f 100644 --- a/md/UBERON/65/UBERON_2000865.md +++ b/md/UBERON/65/UBERON_2000865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000865 * *Label* = epaxial region somite 12 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2000965.md b/md/UBERON/65/UBERON_2000965.md index d029c7e312..15c7f745e4 100644 --- a/md/UBERON/65/UBERON_2000965.md +++ b/md/UBERON/65/UBERON_2000965.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000965[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000965, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_2001065.md b/md/UBERON/65/UBERON_2001065.md index 8bc62079d2..ba9ba23bde 100644 --- a/md/UBERON/65/UBERON_2001065.md +++ b/md/UBERON/65/UBERON_2001065.md @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0003081 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_2001165.md b/md/UBERON/65/UBERON_2001165.md index efe773c1e2..fc00f9ce53 100644 --- a/md/UBERON/65/UBERON_2001165.md +++ b/md/UBERON/65/UBERON_2001165.md @@ -6,7 +6,7 @@ ## Synonyms - * sn5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001165] + * sn5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001165 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2001265.md b/md/UBERON/65/UBERON_2001265.md index 66a137bed5..0590a6c912 100644 --- a/md/UBERON/65/UBERON_2001265.md +++ b/md/UBERON/65/UBERON_2001265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001265 * *Label* = ovarian follicle stage II - * *Definition* = Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2001565.md b/md/UBERON/65/UBERON_2001565.md index 9bdb25ae0b..8271c5f546 100644 --- a/md/UBERON/65/UBERON_2001565.md +++ b/md/UBERON/65/UBERON_2001565.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_2001665.md b/md/UBERON/65/UBERON_2001665.md index 6ccce76af8..b875b59056 100644 --- a/md/UBERON/65/UBERON_2001665.md +++ b/md/UBERON/65/UBERON_2001665.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001665 * *Label* = basibranchial 2 tooth - * *Definition* = Tooth that is attached to the basibranchial 2 tooth plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth that is attached to the basibranchial 2 tooth plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2001765.md b/md/UBERON/65/UBERON_2001765.md index d80d1db10c..3041f2aad3 100644 --- a/md/UBERON/65/UBERON_2001765.md +++ b/md/UBERON/65/UBERON_2001765.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001765 * *Label* = pectoral fin lepidotrichium 5 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001765] + * pectoral fin ray 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001765 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2001865.md b/md/UBERON/65/UBERON_2001865.md index 63640c5654..bc6c0a5a02 100644 --- a/md/UBERON/65/UBERON_2001865.md +++ b/md/UBERON/65/UBERON_2001865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001865 * *Label* = basibranchial 4 cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 4 (pharyngeal arch 6). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 4 element](../../UBERON/18/UBERON_2001918.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2001965.md b/md/UBERON/65/UBERON_2001965.md index 4cdea76892..0069b57c34 100644 --- a/md/UBERON/65/UBERON_2001965.md +++ b/md/UBERON/65/UBERON_2001965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001965 * *Label* = epibranchial 4 bone uncinate process cartilage - * *Definition* = Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2002065.md b/md/UBERON/65/UBERON_2002065.md index 80c8b0f914..fa3a9c2db2 100644 --- a/md/UBERON/65/UBERON_2002065.md +++ b/md/UBERON/65/UBERON_2002065.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002065 * *Label* = ural centrum 1 - * *Definition* = A vertebral centrum that is immediately posterior to preural vertebra 1. Ural centrum 1 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A vertebral centrum that is immediately posterior to preural vertebra 1. Ural centrum 1 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Ural centrum 1 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent and with hypural 1 ventrally. Ural centrum 1 may be defined also as the first ural centrum bearing hypurals 1 and 2 (diural terminology). ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2002165.md b/md/UBERON/65/UBERON_2002165.md index ee39aaf0fa..c941488657 100644 --- a/md/UBERON/65/UBERON_2002165.md +++ b/md/UBERON/65/UBERON_2002165.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002165 * *Label* = caudal procurrent ray set - * *Definition* = An anatomical cluster of short rays, shorter than the principal ones, which form the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with neural spines, epurals and uroneurals (dorsal series) and haemal spines of preural vertebrae (ventral series) (Arratia, 2008). The anteriormost procurrent rays are commonly unsegmented, but the posteriormost ones are usually segmented. The procurrent rays are numbered from caudal to rostral direction. The caudal procurrent ray series is an unpaired median series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_2008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = An anatomical cluster of short rays, shorter than the principal ones, which form the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with neural spines, epurals and uroneurals (dorsal series) and haemal spines of preural vertebrae (ventral series) (Arratia, 2008). The anteriormost procurrent rays are commonly unsegmented, but the posteriormost ones are usually segmented. The procurrent rays are numbered from caudal to rostral direction. The caudal procurrent ray series is an unpaired median series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_2008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * caudal precurrent rays [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002165] - * caudal spiny rays [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002165] - * rudimentary rays [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002165] + * caudal precurrent rays [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002165 ] + * caudal spiny rays [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002165 ] + * rudimentary rays [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002165 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2002265.md b/md/UBERON/65/UBERON_2002265.md index 0b06bea2e0..f72f247a91 100644 --- a/md/UBERON/65/UBERON_2002265.md +++ b/md/UBERON/65/UBERON_2002265.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2005265.md b/md/UBERON/65/UBERON_2005265.md index 0182a43de9..e003c37014 100644 --- a/md/UBERON/65/UBERON_2005265.md +++ b/md/UBERON/65/UBERON_2005265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005265 * *Label* = hyomandibula-opercle joint - * *Definition* = Synovial joint that articulates the hyomandibula and the opercle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:CVS] + * *Definition* = Synovial joint that articulates the hyomandibula and the opercle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:CVS ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [hyomandibular bone](../../UBERON/06/UBERON_0011606.md) and [core#connects](../../ts/core#connects.md) some [opercle](../../UBERON/50/UBERON_2000250.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T06:34:33Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_2005365.md b/md/UBERON/65/UBERON_2005365.md index ee5bd01b28..1b1014ed66 100644 --- a/md/UBERON/65/UBERON_2005365.md +++ b/md/UBERON/65/UBERON_2005365.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3000065.md b/md/UBERON/65/UBERON_3000065.md index 6cdc5613d6..fc99b1bcc1 100644 --- a/md/UBERON/65/UBERON_3000065.md +++ b/md/UBERON/65/UBERON_3000065.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_3000265.md b/md/UBERON/65/UBERON_3000265.md index c4a147efdb..d2374bc399 100644 --- a/md/UBERON/65/UBERON_3000265.md +++ b/md/UBERON/65/UBERON_3000265.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000265 * *Label* = obsolete larval structure - * *Definition* = Anatomical structure that is part of the larva. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Anatomical structure that is part of the larva. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] * *Comment* = Obsolete term in XAO. redundant with stage+skeletal system. Can be properly reinstated if needed. ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/65/UBERON_3000365.md b/md/UBERON/65/UBERON_3000365.md index 18a64b1016..5d9c12366d 100644 --- a/md/UBERON/65/UBERON_3000365.md +++ b/md/UBERON/65/UBERON_3000365.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3000565.md b/md/UBERON/65/UBERON_3000565.md index 392acd2834..2cd8fdbcc8 100644 --- a/md/UBERON/65/UBERON_3000565.md +++ b/md/UBERON/65/UBERON_3000565.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000565 * *Label* = skeletal support for eminentia olfactoria - * *Definition* = Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3000865.md b/md/UBERON/65/UBERON_3000865.md index 84022fd137..0df5aeb7f5 100644 --- a/md/UBERON/65/UBERON_3000865.md +++ b/md/UBERON/65/UBERON_3000865.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000865 * *Label* = epileon - * *Definition* = Dorsal extremity of the ilial shaft, which remains cartilaginous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal extremity of the ilial shaft, which remains cartilaginous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3000965.md b/md/UBERON/65/UBERON_3000965.md index 2f1e4258eb..70ee71c978 100644 --- a/md/UBERON/65/UBERON_3000965.md +++ b/md/UBERON/65/UBERON_3000965.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000965 * *Label* = basale commune (carpal) - * *Definition* = Amalgamation of distal carpals 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Amalgamation of distal carpals 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3010065.md b/md/UBERON/65/UBERON_3010065.md index d80e8ffb8b..be46b03bc3 100644 --- a/md/UBERON/65/UBERON_3010065.md +++ b/md/UBERON/65/UBERON_3010065.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010065 * *Label* = M. gracilis major - * *Definition* = Originates by a broad tendon from the postero-ventral surface of the pelvic rim and inserts by two tendons. One broad tendon inserts on the knee aponeurosis, and in part on the ventro-medial surface of the tibiofibula. The other long tendon inserts on the posterior surface of the tibiofibula just below the proximal head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates by a broad tendon from the postero-ventral surface of the pelvic rim and inserts by two tendons. One broad tendon inserts on the knee aponeurosis, and in part on the ventro-medial surface of the tibiofibula. The other long tendon inserts on the posterior surface of the tibiofibula just below the proximal head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3010465.md b/md/UBERON/65/UBERON_3010465.md index 5d243bd4dc..d6121e6032 100644 --- a/md/UBERON/65/UBERON_3010465.md +++ b/md/UBERON/65/UBERON_3010465.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3010565.md b/md/UBERON/65/UBERON_3010565.md index 810c92d47f..98dcb2461f 100644 --- a/md/UBERON/65/UBERON_3010565.md +++ b/md/UBERON/65/UBERON_3010565.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3010665.md b/md/UBERON/65/UBERON_3010665.md index 674c14426b..4c4020ca1f 100644 --- a/md/UBERON/65/UBERON_3010665.md +++ b/md/UBERON/65/UBERON_3010665.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010665 * *Label* = ramule palatinus - * *Definition* = Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Ramules that descends towards the buccal roof and give rise to several short branches that anastomose with palatine ramus of the facial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_3010765.md b/md/UBERON/65/UBERON_3010765.md index 13ab07735c..315f82a000 100644 --- a/md/UBERON/65/UBERON_3010765.md +++ b/md/UBERON/65/UBERON_3010765.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010765 * *Label* = ramus mandibularis externus - * *Definition* = Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Runs together with motor fibers of the hyomandibular trunk of VII. The mandibularis externus of AVLLN branches into three ramules . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/65/UBERON_4200165.md b/md/UBERON/65/UBERON_4200165.md index 5ed033c0c4..a7f034c34b 100644 --- a/md/UBERON/65/UBERON_4200165.md +++ b/md/UBERON/65/UBERON_4200165.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0000066.md b/md/UBERON/66/UBERON_0000066.md index 86bcfe8d8b..fda60c0f1b 100644 --- a/md/UBERON/66/UBERON_0000066.md +++ b/md/UBERON/66/UBERON_0000066.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000066 * *Label* = fully formed stage - * *Definition* = The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0000166.md b/md/UBERON/66/UBERON_0000166.md index cea9422410..b3119bb2c6 100644 --- a/md/UBERON/66/UBERON_0000166.md +++ b/md/UBERON/66/UBERON_0000166.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000166 * *Label* = oral opening - * *Definition* = The orifice that connects the mouth to the exterior of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/references/reference_0000034] + * *Definition* = The orifice that connects the mouth to the exterior of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/references/reference_0000034 ] ## Synonyms - * oral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59806] - * oral orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59806] - * mouth [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * oral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59806 ] + * oral orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59806 ] + * mouth [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * oral part of face ## Cross-references @@ -26,7 +26,7 @@ * [orifice](../../UBERON/61/UBERON_0000161.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [part_of](../../BFO/50/BFO_0000050.md) some [mouth](../../UBERON/65/UBERON_0000165.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Equivalencies @@ -37,8 +37,9 @@ ## Other Annotations * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) mouth development is very similar in protostomes and 'basal' deuterostomes, whereas the chordate mouth seems to develop at a new position. Recent data for echinoderms and hemichordates further suggest that this change in mouth position may result from change in the influence of a conserved ectodermal patterning system on mouth development. It has been suggested that the mouths of vertebrates and urochordates may constitute a 'new' mouth.[well established][VHOG] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0000366.md b/md/UBERON/66/UBERON_0000366.md index f8209410e3..f36719ee6c 100644 --- a/md/UBERON/66/UBERON_0000366.md +++ b/md/UBERON/66/UBERON_0000366.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000366 * *Label* = flexor muscle - * *Definition* = A muscle that when contracted acts to bend a joint or limb in the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001257] + * *Definition* = A muscle that when contracted acts to bend a joint or limb in the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001257 ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A muscle that decreases the angle of a joint.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0000466.md b/md/UBERON/66/UBERON_0000466.md index d7c0803062..81185944fe 100644 --- a/md/UBERON/66/UBERON_0000466.md +++ b/md/UBERON/66/UBERON_0000466.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000466 * *Label* = immaterial anatomical entity - * *Definition* = Anatomical entity that has no mass. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical entity that has no mass. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms - * immaterial physical anatomical entity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67112] + * immaterial physical anatomical entity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67112 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0000966.md b/md/UBERON/66/UBERON_0000966.md index ffb6eb0d4d..0e21221566 100644 --- a/md/UBERON/66/UBERON_0000966.md +++ b/md/UBERON/66/UBERON_0000966.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000966 * *Label* = retina - * *Definition* = The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retina[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retina, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods ## Synonyms * inner layer of eyeball - * retina of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060041] + * retina of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060041 ] * tunica interna of eyeball - * Netzhaut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001175] + * Netzhaut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001175 ] ## Cross-references @@ -36,9 +36,9 @@ * OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA * SCTID:181171005 * TAO:0000152 - * UMLS:C0035298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1153] - * UMLS:C0035298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retina] - * UMLS:C1278894 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1153] + * UMLS:C0035298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1153 ] + * UMLS:C0035298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retina ] + * UMLS:C1278894 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1153 ] * VHOG:0000229 * Wikipedia:Retina * XAO:0000009 @@ -75,8 +75,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = retinal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001066.md b/md/UBERON/66/UBERON_0001066.md index 50929d9d71..db36e30b5d 100644 --- a/md/UBERON/66/UBERON_0001066.md +++ b/md/UBERON/66/UBERON_0001066.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001066 * *Label* = intervertebral disk - * *Definition* = A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intervertebral_disk] + * *Definition* = A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intervertebral_disk ] * *Comment* = Taxon/Terminology notes: strictly speaking the term intervertebral disk [applies to intervertebral cartilage] whose gel-like core is nucleus puloposus, by this definition only in mammals ## Synonyms - * discus intervertebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10446[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * discus intervertebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10446, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * intervertebral disc - * spinal disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_disc] - * intervertebral fibrocartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003625] - * spinal disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003625] + * spinal disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_disc ] + * intervertebral fibrocartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003625 ] + * spinal disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003625 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A02.165.410 * OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA * SCTID:244570000 - * UMLS:C0021815 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intervertebral_Disc] + * UMLS:C0021815 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intervertebral_Disc ] * Wikipedia:Intervertebral_disk * http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png * ncithesaurus:Intervertebral_Disc @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [nucleus pulposus](../../UBERON/42/UBERON_0002242.md) and [intervertebral cartilage](../../UBERON/35/UBERON_0011135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001166.md b/md/UBERON/66/UBERON_0001166.md index 15f528ad56..4508cd5a08 100644 --- a/md/UBERON/66/UBERON_0001166.md +++ b/md/UBERON/66/UBERON_0001166.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001166 * *Label* = pylorus - * *Definition* = The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pylorus] + * *Definition* = The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pylorus ] * *Comment* = Editor notes: We follow Kardong in defining stomach regions by glands ## Synonyms - * pars pylorica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars pylorica gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14581[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars pylorica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars pylorica gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14581, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pyloric part of stomach * pyloric region - * stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001580] - * valvula pylori [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pylorus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001580 ] + * valvula pylori [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pylorus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0002560 * MESH:A03.492.766.799 * SCTID:362143006 - * UMLS:C0034196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pylorus] + * UMLS:C0034196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pylorus ] * VHOG:0000420 * Wikipedia:Pylorus * galen:Pylorus @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [pyloric antrum](../../UBERON/65/UBERON_0001165.md) and [has_part](../../BFO/51/BFO_0000051.md) some [pyloric canal](../../UBERON/58/UBERON_0008858.md) and [has_part](../../BFO/51/BFO_0000051.md) some [pyloric gastric gland](../../UBERON/61/UBERON_0008861.md) and [zone of stomach](../../UBERON/70/UBERON_0009870.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pyloric * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001266.md b/md/UBERON/66/UBERON_0001266.md index 31404da92c..fe5482e13d 100644 --- a/md/UBERON/66/UBERON_0001266.md +++ b/md/UBERON/66/UBERON_0001266.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001266 * *Label* = splenic cord - * *Definition* = A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cords_of_Billroth] + * *Definition* = A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cords_of_Billroth ] ## Synonyms - * cord of Billroth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cords_of_Billroth] - * cord of Bilroth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16031] + * cord of Billroth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cords_of_Billroth ] + * cord of Bilroth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16031 ] ## Cross-references * FMA:16031 * MA:0002671 - * UMLS:C0735011 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Cord] + * UMLS:C0735011 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Cord ] * Wikipedia:Cords_of_Billroth * ncithesaurus:Splenic_Cord @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001366.md b/md/UBERON/66/UBERON_0001366.md index ae1fe910ed..37dc0e67d7 100644 --- a/md/UBERON/66/UBERON_0001366.md +++ b/md/UBERON/66/UBERON_0001366.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001366 * *Label* = parietal peritoneum - * *Definition* = The peritoneum that lines the walls of the peritoneal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_peritoneum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The peritoneum that lines the walls of the peritoneal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_peritoneum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = fix coordinated with ZFA ## Synonyms - * peritoneal cavity lining [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000449] + * peritoneal cavity lining [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000449 ] ## Cross-references @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Peritoneum attached to the abdominal wall.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004459 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001466.md b/md/UBERON/66/UBERON_0001466.md index b1a9e749a4..e9757c4d39 100644 --- a/md/UBERON/66/UBERON_0001466.md +++ b/md/UBERON/66/UBERON_0001466.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001466 * *Label* = pedal digit - * *Definition* = A digit that is part of a pes (foot)[https://orcid.org/0000-0002-6601-2165]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toe] + * *Definition* = A digit that is part of a pes (foot)[https://orcid.org/0000-0002-6601-2165]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toe ] ## Synonyms * digit of foot - * digit of terminal segment of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digiti pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70664[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * digit of terminal segment of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digiti pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70664, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * digitus pedis - * foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000048] - * hind digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003035] - * hind_digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000888] + * foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000048 ] + * hind digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003035 ] + * hind_digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000888 ] * hindlimb digit * pes digit - * toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25046] - * digiti pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Toe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * digitipedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002348] + * toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25046 ] + * digiti pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Toe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * digitipedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002348 ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0000048 * OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA * SCTID:116667001 - * UMLS:C0040357 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Toe] + * UMLS:C0040357 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Toe ] * Wikipedia:Toe * XAO:0003035 * galen:Toe @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit](../../UBERON/44/UBERON_0002544.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/UBERON_0000468 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000027 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001566.md b/md/UBERON/66/UBERON_0001566.md index b51a23b94a..78fbb97990 100644 --- a/md/UBERON/66/UBERON_0001566.md +++ b/md/UBERON/66/UBERON_0001566.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001566 * *Label* = cricothyroid muscle - * *Definition* = The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_muscle] + * *Definition* = The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * M. cricothyroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * M. cricothyroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * cricothyroid * cricothyroideus - * musculus cricothyroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46417[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus cricothyroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46417, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:46417 * MA:0002284 * SCTID:244809007 - * UMLS:C0224178 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricothyroid_Muscle] + * UMLS:C0224178 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricothyroid_Muscle ] * Wikipedia:Cricothyroid_muscle * http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001666.md b/md/UBERON/66/UBERON_0001666.md index e5ff6843f3..5068267aac 100644 --- a/md/UBERON/66/UBERON_0001666.md +++ b/md/UBERON/66/UBERON_0001666.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001666 * *Label* = flexor digitorum longus - * *Definition* = The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_longus] + * *Definition* = The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_longus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:51071 * MA:0002299 * SCTID:181703002 - * UMLS:C1261048 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flexor_Digitorum_Longus] + * UMLS:C1261048 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flexor_Digitorum_Longus ] * Wikipedia:Flexor_digitorum_longus * http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png * ncithesaurus:Flexor_Digitorum_Longus @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001766.md b/md/UBERON/66/UBERON_0001766.md index 1199bba9ee..e0f71cbb96 100644 --- a/md/UBERON/66/UBERON_0001766.md +++ b/md/UBERON/66/UBERON_0001766.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001766 * *Label* = anterior chamber of eyeball - * *Definition* = the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_chamber_of_eyeball] + * *Definition* = the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_chamber_of_eyeball ] * *Comment* = AO notes: space in EHDAA2 - consider adding Cavity of anterior chamber of eyeball ## Synonyms - * anterior chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000593[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010709] + * anterior chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000593, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010709 ] * anterior chamber of eye * camera anterior * eye anterior chamber - * camera anterior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002084] - * camera anterior bulbi oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_chamber_of_eyeball[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * camera oculi anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002084] + * camera anterior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002084 ] + * camera anterior bulbi oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_chamber_of_eyeball, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * camera oculi anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002084 ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0000262 * MESH:A09.371.060.067 * SCTID:181160009 - * UMLS:C0003151 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Chamber_of_the_Eye] + * UMLS:C0003151 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Chamber_of_the_Eye ] * VHOG:0001431 * Wikipedia:Anterior_chamber_of_eyeball * http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the eyeball between the cornea and the iris, filled with aqueous humor. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001866.md b/md/UBERON/66/UBERON_0001866.md index 18e2ea0746..18047ab72e 100644 --- a/md/UBERON/66/UBERON_0001866.md +++ b/md/UBERON/66/UBERON_0001866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001866 * *Label* = sebum - * *Definition* = Fatty lubricant matter secreted by sebaceous glands, and made of made of triglyceride oils, wax, squalene, and metabolytes of fat-producing cells[BTO,WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001981[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sebaceous_glands#Sebum] + * *Definition* = Fatty lubricant matter secreted by sebaceous glands, and made of made of triglyceride oils, wax, squalene, and metabolytes of fat-producing cells[BTO,WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001981, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sebaceous_glands#Sebum ] * *Comment* = The composition of sebum varies across species. In humans, the lipid content is as follows: 25% wax monoesters, 41% triglycerides, 16% free fatty acids, 12% squalene; Sapienic acid is a sebum fatty acid that is unique to humans. ## Synonyms @@ -17,7 +17,7 @@ * GAID:1168 * MA:0002538 * MESH:A12.200.702 - * UMLS:C0036511 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sebum] + * UMLS:C0036511 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sebum ] * Wikipedia:Sebaceous_glands#Sebum * ncithesaurus:Sebum @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0001966.md b/md/UBERON/66/UBERON_0001966.md index 1ad202acd6..9ef11125b9 100644 --- a/md/UBERON/66/UBERON_0001966.md +++ b/md/UBERON/66/UBERON_0001966.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001966 * *Label* = substantia nigra pars reticulata - * *Definition* = Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_968] + * *Definition* = Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_968 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * pars reticularis substantiae nigrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62908[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pars reticularis substantiae nigrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62908, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pars reticulata * reticular part of substantia nigra * substantia nigra, reticular part - * SNR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_968[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Substantia nigra reticular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNr] - * nucleus substantiae nigrae, Pars compacta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars compacta of substantia nigra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537] - * substantia nigra reticular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNR] - * substantia nigra reticular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNr] - * substantia nigra, pars compacta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:537[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia nigra, pars reticulata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNR] - * substantia nigra, reticular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNR] + * SNR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_968, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Substantia nigra reticular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNr ] + * nucleus substantiae nigrae, Pars compacta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars compacta of substantia nigra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537 ] + * substantia nigra reticular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNR ] + * substantia nigra reticular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNr ] + * substantia nigra, pars compacta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:537, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia nigra, pars reticulata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNR ] + * substantia nigra, reticular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNR ] ## Cross-references @@ -32,8 +32,8 @@ * FMA:62908 * MA:0001066 * NIF_GrossAnatomy:birnlex_968 - * NeuroNames:537 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_968] - * UMLS:C0175413 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_968] + * NeuroNames:537 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_968 ] + * UMLS:C0175413 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_968 ] * Wikipedia:Pars_reticulata ## Subsets @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002066.md b/md/UBERON/66/UBERON_0002066.md index a61e261b08..b83fddfc5a 100644 --- a/md/UBERON/66/UBERON_0002066.md +++ b/md/UBERON/66/UBERON_0002066.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002066 * *Label* = umbilical vein - * *Definition* = The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_vein] + * *Definition* = The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_vein ] ## Synonyms - * vena umbilicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Umbilical_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena umbilicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Umbilical_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g * RETIRED_EHDAA2:0002107 * SCTID:367567000 - * UMLS:C0041637 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Umbilical_Vein] + * UMLS:C0041637 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Umbilical_Vein ] * Wikipedia:Umbilical_vein * http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png @@ -41,7 +41,7 @@ * [vein](../../UBERON/38/UBERON_0001638.md) * [umbilical blood vessel](../../UBERON/60/UBERON_0010260.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) * [located_in](../../RO/25/RO_0001025.md) some [mesenchyme of umbilical cord](../../UBERON/22/UBERON_0003422.md) ## Equivalencies @@ -53,8 +53,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002166.md b/md/UBERON/66/UBERON_0002166.md index ac9b598153..e9458156de 100644 --- a/md/UBERON/66/UBERON_0002166.md +++ b/md/UBERON/66/UBERON_0002166.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002166 * *Label* = endocardium of atrium - * *Definition* = Endocardium that is part of the atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endocardium that is part of the atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Cardiac atria endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Cardiac atria endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * atrial endocardium * atrium endocardium - * atrium of heart endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac atrium endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of Cardiac atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of heart atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart atrium endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000606] + * atrium of heart endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac atrium endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of Cardiac atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of heart atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart atrium endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000606 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002266.md b/md/UBERON/66/UBERON_0002266.md index f225989300..10b18b0146 100644 --- a/md/UBERON/66/UBERON_0002266.md +++ b/md/UBERON/66/UBERON_0002266.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002266 * *Label* = anterior olfactory nucleus - * *Definition* = Laminated structure lying caudal to the olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1085] + * *Definition* = Laminated structure lying caudal to the olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1085 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nucleus retrobulbaris [a8] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77628[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus retrobulbaris [a8] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77628, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * retrobulbar nucleus [a8] - * AON [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003649] - * anterior olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AO] - * anterior olfactory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003649] - * anterior olfactory nucleus retrobulbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AO] - * area retrobulbaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:280[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus olfactorius anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_olfactory_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio retrobulbaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:280[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * retrobulbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:280] + * AON [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003649 ] + * anterior olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AO ] + * anterior olfactory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003649 ] + * anterior olfactory nucleus retrobulbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AO ] + * area retrobulbaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:280, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus olfactorius anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_olfactory_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio retrobulbaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:280, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * retrobulbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:280 ] ## Cross-references @@ -30,9 +30,9 @@ * FMA:77628 * MA:0000968 * NIF_GrossAnatomy:birnlex_1085 - * NeuroNames:280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1085] - * UMLS:C0175225 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1085] - * UMLS:C0175225 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Olfactory_Nucleus] + * NeuroNames:280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1085 ] + * UMLS:C0175225 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1085 ] + * UMLS:C0175225 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Olfactory_Nucleus ] * Wikipedia:Anterior_olfactory_nucleus * http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002366.md b/md/UBERON/66/UBERON_0002366.md index 37b4b6579f..e4f15d365f 100644 --- a/md/UBERON/66/UBERON_0002366.md +++ b/md/UBERON/66/UBERON_0002366.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002366 * *Label* = bulbo-urethral gland - * *Definition* = Any of the small paired racemose glands below the apex of the prostate in males, located posterolateral to the membranous portion of the urethra at the base of the penis, between the two layers of the fascia of the urogenital diaphragm, in the deep perineal pouch, and enclosed by transverse fibers of the sphincter urethrae membranaceae muscle; homologous to the greater vestibular (Bartholin's) glands in the female[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbourethral_gland] + * *Definition* = Any of the small paired racemose glands below the apex of the prostate in males, located posterolateral to the membranous portion of the urethra at the base of the penis, between the two layers of the fascia of the urogenital diaphragm, in the deep perineal pouch, and enclosed by transverse fibers of the sphincter urethrae membranaceae muscle; homologous to the greater vestibular (Bartholin's) glands in the female[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbourethral_gland ] * *Comment* = Structure notes: The bulbourethral glands are compound tubulo-alveolar glands. AO notes: see comments for paraurethral gland - ncita placement may not be correct ## Synonyms - * Cowper's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9599] - * Cowper's glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9599[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * Cowper's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9599 ] + * Cowper's glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9599, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * Mery's gland - * Mry gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] - * bulbourethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9599] - * glandula bulbourethralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Mry gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] + * bulbourethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9599 ] + * glandula bulbourethralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0000401 * MESH:A05.360.444.123 * SCTID:278918009 - * UMLS:C0006366 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cowper_s_Gland] + * UMLS:C0006366 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cowper_s_Gland ] * Wikipedia:Bulbourethral_gland * http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands[FMA] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = any of the small paired racemose (compound tubulo-alveolar) glands below the apex of the prostate in males, located posterolateral to the membranous portion of the urethra at the base of the penis, between the two layers of the fascia of the urogenital diaphragm, in the deep perineal pouch, and enclosed by transverse fibers of the sphincter urethrae membranaceae muscle; they secrete a clear fluid known as pre-ejaculate (Cowper's fluid), and are homologous to the greater vestibular (Bartholin's) glands in the female[MP]. * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0000460 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002466.md b/md/UBERON/66/UBERON_0002466.md index 4f50f08db4..999651981f 100644 --- a/md/UBERON/66/UBERON_0002466.md +++ b/md/UBERON/66/UBERON_0002466.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002466 * *Label* = intestine secretion - * *Definition* = Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Succus_entericus] + * *Definition* = Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Succus_entericus ] ## Synonyms - * intestinal secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62974] + * intestinal secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62974 ] * succus entericus ## Cross-references @@ -17,7 +17,7 @@ * GAID:1162 * MA:0002515 * MESH:A12.200.390 - * UMLS:C0021849 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestinal_Secretion] + * UMLS:C0021849 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestinal_Secretion ] * Wikipedia:Succus_entericus * ncithesaurus:Intestinal_Secretion @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002566.md b/md/UBERON/66/UBERON_0002566.md index 29be65bbc3..e902f90c47 100644 --- a/md/UBERON/66/UBERON_0002566.md +++ b/md/UBERON/66/UBERON_0002566.md @@ -6,20 +6,20 @@ ## Synonyms - * precentral dimple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83763] - * sulcus praecentralis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1038] - * sulcus precentralis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1038] - * superior part of precentral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83763] - * sprs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1038[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * superior precentral dimple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:71] + * precentral dimple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83763 ] + * sulcus praecentralis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1038 ] + * sulcus precentralis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1038 ] + * superior part of precentral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83763 ] + * sprs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1038, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * superior precentral dimple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:71 ] ## Cross-references * BAMS:sprs * FMA:83763 * NIF_GrossAnatomy:birnlex_1038 - * NeuroNames:71 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1038] - * UMLS:C0262338 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1038] + * NeuroNames:71 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1038 ] + * UMLS:C0262338 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1038 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002666.md b/md/UBERON/66/UBERON_0002666.md index 3f30c21e13..f13641881b 100644 --- a/md/UBERON/66/UBERON_0002666.md +++ b/md/UBERON/66/UBERON_0002666.md @@ -7,13 +7,13 @@ ## Synonyms * mesencephalic root of v - * mesencephalic trigeminal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72489] - * me5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1318[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * mesencephalic tract of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:596] - * midbrain tract of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mtV] - * tractus mesencephalicus nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:596[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus mesencephalicus nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:596[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus mesencephalicus trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:596[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mesencephalic trigeminal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72489 ] + * me5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1318, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * mesencephalic tract of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:596 ] + * midbrain tract of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mtV ] + * tractus mesencephalicus nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:596, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus mesencephalicus nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:596, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus mesencephalicus trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:596, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,9 +21,9 @@ * BAMS:mtV * FMA:72489 * NIF_GrossAnatomy:birnlex_1318 - * NeuroNames:596 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1318] + * NeuroNames:596 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1318 ] * SCTID:369263007 - * UMLS:C0228703 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1318] + * UMLS:C0228703 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1318 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002766.md b/md/UBERON/66/UBERON_0002766.md index d7c5f0262f..cb0cb19aef 100644 --- a/md/UBERON/66/UBERON_0002766.md +++ b/md/UBERON/66/UBERON_0002766.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002766 * *Label* = fusiform gyrus - * *Definition* = The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fusiform_gyrus] + * *Definition* = The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fusiform_gyrus ] ## Synonyms - * gyrus occipitotemporalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61908[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral occipitotemporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61908] + * gyrus occipitotemporalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61908, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral occipitotemporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61908 ] * medial occipitotemporal gyrus-1 (heimer) - * occipitotemporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61908] - * gyrus fusiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fusiform_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus occipito-temporalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:139[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral occipito-temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:139] - * occipito-temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:OTG] - * t4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:139] + * occipitotemporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61908 ] + * gyrus fusiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fusiform_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus occipito-temporalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:139, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral occipito-temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:139 ] + * occipito-temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:OTG ] + * t4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:139 ] ## Cross-references @@ -24,9 +24,9 @@ * BAMS:OTG * FMA:61908 * NIF_GrossAnatomy:birnlex_1641 - * NeuroNames:139 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1641] + * NeuroNames:139 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1641 ] * SCTID:110678003 - * UMLS:C0152313 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1641] + * UMLS:C0152313 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1641 ] * Wikipedia:Fusiform_gyrus * http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002866.md b/md/UBERON/66/UBERON_0002866.md index d17c53cc0b..7d5564e034 100644 --- a/md/UBERON/66/UBERON_0002866.md +++ b/md/UBERON/66/UBERON_0002866.md @@ -7,17 +7,17 @@ ## Synonyms * caudal nucleus (kandell) - * caudal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2637] - * spinal trigeminal nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72606] - * CSp5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2637[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Spinal nucleus of the trigeminal caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPVC] - * caudal part of the spinal trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:771] - * nucleus caudalis tractus spinalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:771[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus spinalis nervi trigemini, pars caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:771[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinal nucleus of the trigeminal nerve caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPVC] - * spinal nucleus of the trigeminal, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:771] - * spinal trigeminal nucleus caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Sp5C] - * subnucleus caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:771[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caudal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2637 ] + * spinal trigeminal nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72606 ] + * CSp5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2637, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Spinal nucleus of the trigeminal caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPVC ] + * caudal part of the spinal trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:771 ] + * nucleus caudalis tractus spinalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:771, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus spinalis nervi trigemini, pars caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:771, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinal nucleus of the trigeminal nerve caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPVC ] + * spinal nucleus of the trigeminal, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:771 ] + * spinal trigeminal nucleus caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Sp5C ] + * subnucleus caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:771, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * FMA:72606 * MESH:A08.186.211.132.931.920.927 * NIF_GrossAnatomy:birnlex_2637 - * NeuroNames:771 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2637] - * UMLS:C0040994 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2637] + * NeuroNames:771 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2637 ] + * UMLS:C0040994 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2637 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0002966.md b/md/UBERON/66/UBERON_0002966.md index b9410003e6..657ffadf30 100644 --- a/md/UBERON/66/UBERON_0002966.md +++ b/md/UBERON/66/UBERON_0002966.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002966 * *Label* = regional part of midbrain tectum - * *Definition* = A regional part of brain that is part of a midbrain tectum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a midbrain tectum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain tectum segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62398] - * segment of midbrain tectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_795] + * midbrain tectum segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62398 ] + * segment of midbrain tectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_795 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tectum](../../UBERON/14/UBERON_0002314.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003066.md b/md/UBERON/66/UBERON_0003066.md index 9b1593996a..628b5c4e25 100644 --- a/md/UBERON/66/UBERON_0003066.md +++ b/md/UBERON/66/UBERON_0003066.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003066 * *Label* = pharyngeal arch 2 - * *Definition* = assists in forming the side and front of the neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Second_pharyngeal_arch] + * *Definition* = assists in forming the side and front of the neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Second_pharyngeal_arch ] * *Comment* = In XAO, develops from visceral pouch 2 ## Synonyms * 2nd pharyngeal arch - * arcus pharyngeus secundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Second_pharyngeal_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * branchial arch 2 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hyoid arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000098] + * arcus pharyngeus secundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Second_pharyngeal_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * branchial arch 2 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hyoid arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000098 ] * pharyngeal arch 2 - * second branchial arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * second branchial arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * second pharyngeal arch - * second visceral arch [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * visceral arch 2 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * 2nd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000050] - * 2nd visceral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000297] + * second visceral arch [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * visceral arch 2 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * 2nd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000050 ] + * 2nd visceral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000297 ] * hyoid bars - * pharyngeal arches 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000297] + * pharyngeal arches 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000297 ] ## Cross-references @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG] * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 2 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003166.md b/md/UBERON/66/UBERON_0003166.md index 0e7852470f..2d179edca3 100644 --- a/md/UBERON/66/UBERON_0003166.md +++ b/md/UBERON/66/UBERON_0003166.md @@ -7,7 +7,7 @@ ## Synonyms - * theca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004534] + * theca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004534 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004534 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000804 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003166 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_0003266.md b/md/UBERON/66/UBERON_0003266.md index e0ebfae90b..1244d0db42 100644 --- a/md/UBERON/66/UBERON_0003266.md +++ b/md/UBERON/66/UBERON_0003266.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA:2851 * *[consider](../../er/oboInOwl#consider.md)* = EMAPA:17263 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003266 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_0003366.md b/md/UBERON/66/UBERON_0003366.md index b9a758e90d..c6db33044b 100644 --- a/md/UBERON/66/UBERON_0003366.md +++ b/md/UBERON/66/UBERON_0003366.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003366 * *Label* = epithelium of uterine horn - * *Definition* = An epithelium that is part of a uterine horn [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a uterine horn [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of uterine horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine horn epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uterine horn epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of uterine horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine horn epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uterine horn epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine horn](../../UBERON/47/UBERON_0002247.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003466.md b/md/UBERON/66/UBERON_0003466.md index c3d9f7f64c..a642caf9c5 100644 --- a/md/UBERON/66/UBERON_0003466.md +++ b/md/UBERON/66/UBERON_0003466.md @@ -3,74 +3,74 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003466 * *Label* = forelimb zeugopod bone - * *Definition* = A bone that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antebrachial region bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bone organ of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000598] - * lower segment of arm bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing zeugopod bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * antebrachial region bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antebrachial region bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bone organ of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000598 ] + * lower segment of arm bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing zeugopod bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -87,15 +87,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003566.md b/md/UBERON/66/UBERON_0003566.md index f196883739..6bf60a07aa 100644 --- a/md/UBERON/66/UBERON_0003566.md +++ b/md/UBERON/66/UBERON_0003566.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003566 * *Label* = head connective tissue - * *Definition* = A portion of connective tissue that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adult head connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult head portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult head textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * head portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * head textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult head connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult head portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult head textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * head portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * head textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003666.md b/md/UBERON/66/UBERON_0003666.md index 480a0e5221..fa564e17db 100644 --- a/md/UBERON/66/UBERON_0003666.md +++ b/md/UBERON/66/UBERON_0003666.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003666 * *Label* = upper jaw molar - * *Definition* = A molar tooth that is part of a upper jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A molar tooth that is part of a upper jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * molar tooth of upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper jaw molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper primary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84210] - * maxillary secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] - * upper molar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper permanent molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] - * upper secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55720] + * molar tooth of upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper jaw molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper primary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84210 ] + * maxillary secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] + * upper molar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper permanent molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] + * upper secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55720 ] ## Cross-references @@ -23,7 +23,7 @@ * EMAPA:17942 * FMA:55720 * MA:0001603 - * UMLS:C1710580 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Jaw_Molar] + * UMLS:C1710580 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Jaw_Molar ] * ncithesaurus:Upper_Jaw_Molar ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [molar tooth](../../UBERON/55/UBERON_0003655.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003866.md b/md/UBERON/66/UBERON_0003866.md index a1368a8958..518ea0bc8a 100644 --- a/md/UBERON/66/UBERON_0003866.md +++ b/md/UBERON/66/UBERON_0003866.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003866 * *Label* = middle phalanx of pes - * *Definition* = A middle phalanx that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A middle phalanx that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot middle phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001386] + * foot middle phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001386 ] * middle pedal phalanx * middle phalanx of foot - * middle phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75829] + * middle phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75829 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0003966.md b/md/UBERON/66/UBERON_0003966.md index f4e49566ce..1e84ad6bc8 100644 --- a/md/UBERON/66/UBERON_0003966.md +++ b/md/UBERON/66/UBERON_0003966.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003966 * *Label* = gonial bone - * *Definition* = investing bone that lies on the surface of the malleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008380] + * *Definition* = investing bone that lies on the surface of the malleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008380 ] * *Comment* = Editors note: To be revisted after a review of auditory ossicles ## Synonyms - * gonium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008380] + * gonium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008380 ] ## Cross-references @@ -21,7 +21,7 @@ * [endochondral bone](../../UBERON/13/UBERON_0002513.md) * [head bone](../../UBERON/57/UBERON_0003457.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) ## Equivalencies @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004066.md b/md/UBERON/66/UBERON_0004066.md index 4b788c2c34..0785146bf1 100644 --- a/md/UBERON/66/UBERON_0004066.md +++ b/md/UBERON/66/UBERON_0004066.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004066 * *Label* = frontonasal prominence - * *Definition* = The unpaired embryonic prominence that is formed by the tissues surrounding the forebrain vesicle and develops into the forehead and bridge of the nose/snout. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009901] + * *Definition* = The unpaired embryonic prominence that is formed by the tissues surrounding the forebrain vesicle and develops into the forehead and bridge of the nose/snout. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009901 ] ## Synonyms - * embryonic frontonasal prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * forebrain prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009901] - * frontonasal mass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009901] - * frontonasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009901] - * prominentia frontonasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontonasal_prominence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * embryonic frontonasal prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * forebrain prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009901 ] + * frontonasal mass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009901 ] + * frontonasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009901 ] + * prominentia frontonasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontonasal_prominence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * EHDAA:4778 * EMAPA:16681 * SCTID:361486000 - * UMLS:C1517321 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontonasal_Prominence] + * UMLS:C1517321 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontonasal_Prominence ] * VHOG:0001319 * Wikipedia:Frontonasal_prominence * http://upload.wikimedia.org/wikipedia/commons/9/98/Gray44.png @@ -44,8 +44,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006237 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004166.md b/md/UBERON/66/UBERON_0004166.md index f10cf3d43f..7b07cd6ad8 100644 --- a/md/UBERON/66/UBERON_0004166.md +++ b/md/UBERON/66/UBERON_0004166.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004166 * *Label* = superior reticular formation - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021729[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000021] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021729, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000021 ] * *Comment* = check ZFA structures superior reticular formation medial column & tegmentum ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004266.md b/md/UBERON/66/UBERON_0004266.md index 2224a0dd51..3aba17974b 100644 --- a/md/UBERON/66/UBERON_0004266.md +++ b/md/UBERON/66/UBERON_0004266.md @@ -3,81 +3,81 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004266 * *Label* = upper leg connective tissue - * *Definition* = A portion of connective tissue that is part of a hindlimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a hindlimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free lower limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Proximal segment of free lower limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Proximal segment of free lower limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of Proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of Proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of Proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thigh textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper leg portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper leg textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free lower limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Proximal segment of free lower limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Proximal segment of free lower limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of Proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of Proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of Proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thigh textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper leg portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper leg textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -93,15 +93,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004366.md b/md/UBERON/66/UBERON_0004366.md index d696ee71fd..67cd035b69 100644 --- a/md/UBERON/66/UBERON_0004366.md +++ b/md/UBERON/66/UBERON_0004366.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004366 * *Label* = extraembryonic ectoderm - * *Definition* = layer of the endoderm of the extraembryonic tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002583] + * *Definition* = layer of the endoderm of the extraembryonic tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002583 ] * *Comment* = Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic diskthe continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004466.md b/md/UBERON/66/UBERON_0004466.md index 11af296388..3b70f2f954 100644 --- a/md/UBERON/66/UBERON_0004466.md +++ b/md/UBERON/66/UBERON_0004466.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004466 * *Label* = musculature of leg - * *Definition* = Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a lower leg or upper leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = see notes on UBERON:0000978 for possible confusion over the term 'leg'. This class represents the class-union of upper leg musculature and lower leg musculature (and thus may not mean precisely the same thing as the EHDAA2 class) ## Synonyms - * leg muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000973] + * leg muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000973 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005632 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004666.md b/md/UBERON/66/UBERON_0004666.md index c7229e9bff..03e4f484d7 100644 --- a/md/UBERON/66/UBERON_0004666.md +++ b/md/UBERON/66/UBERON_0004666.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004666 * *Label* = interventricular septum membranous part - * *Definition* = The membranous portion of the wall between the two lower chambers of the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008823] + * *Definition* = The membranous portion of the wall between the two lower chambers of the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008823 ] ## Synonyms - * cardiac ventricular membranous septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * membranous interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7135] - * membranous part interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000927] - * membranous part of interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7135] - * membranous portion of interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7135] - * pars membranacea (septi interventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7135] - * membranous septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003149] - * ventricular membranous septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008823] - * membranous interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002939] + * cardiac ventricular membranous septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * membranous interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7135 ] + * membranous part interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000927 ] + * membranous part of interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7135 ] + * membranous portion of interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7135 ] + * pars membranacea (septi interventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7135 ] + * membranous septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003149 ] + * ventricular membranous septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008823 ] + * membranous interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002939 ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [membranous layer](../../UBERON/58/UBERON_0000158.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interventricular septum](../../UBERON/94/UBERON_0002094.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The membranous septum is the upper part of ventricular septum[GO:0003149]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004143 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004766.md b/md/UBERON/66/UBERON_0004766.md index d58d4f969f..1d2500782c 100644 --- a/md/UBERON/66/UBERON_0004766.md +++ b/md/UBERON/66/UBERON_0004766.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004766 * *Label* = cranial bone - * *Definition* = A bone that is part of a cranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:automatic] + * *Definition* = A bone that is part of a cranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:automatic ] * *Comment* = Note that here cranium = skull - mandible ## Synonyms - * cranium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:automatic] + * cranium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cranium](../../UBERON/28/UBERON_0003128.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0004866.md b/md/UBERON/66/UBERON_0004866.md index d4dbd40fae..ba55db69e7 100644 --- a/md/UBERON/66/UBERON_0004866.md +++ b/md/UBERON/66/UBERON_0004866.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004866 * *Label* = actinopterygian frontal bone - * *Definition* = Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] + * *Definition* = Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] * *Comment* = The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods ## Synonyms - * actinopterygian frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] - * actinopterygian frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] - * frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514] - * frontals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000514[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * actinopterygian frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] + * actinopterygian frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] + * frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514 ] + * frontals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000514, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,7 +29,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [vault of skull](../../UBERON/39/UBERON_0004339.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Equivalencies @@ -47,8 +47,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps mesethmoid-frontal joint (TAO:0001678)[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The frontal bone may be paired or unpaired. The frontal bone of actinopterygians is homologous to the parietal of tetrapods. Actinopterygians do not have a frontal bone. For details, see Schultze (2008) and Wiley (2008).[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005066.md b/md/UBERON/66/UBERON_0005066.md index 04b675cb8a..7d4c7dea56 100644 --- a/md/UBERON/66/UBERON_0005066.md +++ b/md/UBERON/66/UBERON_0005066.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005066 * *Label* = right ventricular trabecular myocardium - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003227] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003227 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) and [trabecular layer of ventricle](../../UBERON/26/UBERON_0004126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005266.md b/md/UBERON/66/UBERON_0005266.md index a8fd408830..f0b42b8f24 100644 --- a/md/UBERON/66/UBERON_0005266.md +++ b/md/UBERON/66/UBERON_0005266.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = VHOG:0000628 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005266 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_0005366.md b/md/UBERON/66/UBERON_0005366.md index 658e379015..3f7a70c05b 100644 --- a/md/UBERON/66/UBERON_0005366.md +++ b/md/UBERON/66/UBERON_0005366.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005366 * *Label* = olfactory lobe - * *Definition* = Olfactory apparatus on the lower surface of the frontal lobe of the brain. It consists of the olfactory bulb, tract, and trigone[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001362] + * *Definition* = Olfactory apparatus on the lower surface of the frontal lobe of the brain. It consists of the olfactory bulb, tract, and trigone[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001362 ] ## Synonyms @@ -18,7 +18,7 @@ * MA:0002413 * MIAA:0000116 * NeuroNames:2078 - * UMLS:C0178780 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Lobe] + * UMLS:C0178780 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Lobe ] * VHOG:0000833 * ncithesaurus:Olfactory_Lobe @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the telencephalon, comprised of paired anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits. In Xenopus,the olfactory bulbs begin to fuse at NF stage 50, fusion is complete around NF stage 58. The cerebral vein loops around the olfactory bulb by NF stage 43[XAO:0004180]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In mammals) Odorant detection is mediated by millions of olfactory sensory neurons located in the olfactory epithelium lining the nasal cavity. These neurons transmit sensory signals to the olfactory bulb of the brain, which in turn sends signals to the olfactory cortex.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005466.md b/md/UBERON/66/UBERON_0005466.md index 83b21def61..01ac7ccf8e 100644 --- a/md/UBERON/66/UBERON_0005466.md +++ b/md/UBERON/66/UBERON_0005466.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005466 * *Label* = paravertebral ganglia - * *Definition* = Along the length of the sympathetic trunk are ganglia known as ganglia of sympathetic trunk or paravertebral ganglia. The ganglia are distinguished as cervical, thoracic, lumbar, and sacral and, except in the neck, they closely correspond in number to the vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglia] + * *Definition* = Along the length of the sympathetic trunk are ganglia known as ganglia of sympathetic trunk or paravertebral ganglia. The ganglia are distinguished as cervical, thoracic, lumbar, and sacral and, except in the neck, they closely correspond in number to the vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglia ] ## Synonyms - * paravertebral ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:80128] - * paravertebral ganglia set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:80128] - * set of paravertebral ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:80128] - * ganglia of sympathetic trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglia] - * ganglia trunci sympathici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paravertebral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglia] - * sympathetic chain ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paravertebral_ganglia] + * paravertebral ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:80128 ] + * paravertebral ganglia set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:80128 ] + * set of paravertebral ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:80128 ] + * ganglia of sympathetic trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglia ] + * ganglia trunci sympathici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paravertebral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglia ] + * sympathetic chain ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paravertebral_ganglia ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005566.md b/md/UBERON/66/UBERON_0005566.md index e87ebc5c7c..bc9851d428 100644 --- a/md/UBERON/66/UBERON_0005566.md +++ b/md/UBERON/66/UBERON_0005566.md @@ -6,8 +6,8 @@ ## Synonyms - * floor plate r1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000882] - * floor plate rhombomere 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000882] + * floor plate r1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000882 ] + * floor plate rhombomere 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000882 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005666.md b/md/UBERON/66/UBERON_0005666.md index 0e7191b433..9978720676 100644 --- a/md/UBERON/66/UBERON_0005666.md +++ b/md/UBERON/66/UBERON_0005666.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005666 * *Label* = 4th arch endoderm - * *Definition* = An endoderm that is part of a pharyngeal arch 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a pharyngeal arch 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th pharyngeal arch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001092] + * 4th pharyngeal arch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001092 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005866.md b/md/UBERON/66/UBERON_0005866.md index a6f4cccd9c..370cacbc66 100644 --- a/md/UBERON/66/UBERON_0005866.md +++ b/md/UBERON/66/UBERON_0005866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005866 * *Label* = pre-cartilage condensation - * *Definition* = A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000150[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000150, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0005966.md b/md/UBERON/66/UBERON_0005966.md index e673694730..bab6806022 100644 --- a/md/UBERON/66/UBERON_0005966.md +++ b/md/UBERON/66/UBERON_0005966.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005966 * *Label* = outflow part of left atrium - * *Definition* = An outflow tract of atrium that is part of a left atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An outflow tract of atrium that is part of a left atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * main part of left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9551] - * outflow tract of left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9551] + * main part of left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9551 ] + * outflow tract of left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9551 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [outflow tract of atrium](../../UBERON/46/UBERON_0005946.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cardiac atrium](../../UBERON/79/UBERON_0002079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006166.md b/md/UBERON/66/UBERON_0006166.md index b931a98ebf..e8fa2fb0c4 100644 --- a/md/UBERON/66/UBERON_0006166.md +++ b/md/UBERON/66/UBERON_0006166.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral dorsal digital artery for digit 05 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001956] + * lateral dorsal digital artery for digit 05 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001956 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006266.md b/md/UBERON/66/UBERON_0006266.md index 813caee759..fe034b6fdb 100644 --- a/md/UBERON/66/UBERON_0006266.md +++ b/md/UBERON/66/UBERON_0006266.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006266 * *Label* = nasolacrimal groove - * *Definition* = Groove between maxillary prominence and lateral nasal process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_groove[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.indiana.edu/~anat550/hnanim/face/face.html] + * *Definition* = Groove between maxillary prominence and lateral nasal process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_groove, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.indiana.edu/~anat550/hnanim/face/face.html ] * *Comment* = On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct[WP] See also: oblique facial cleft ## Synonyms - * naso-lacrimal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16679] - * s. lacrimalis maxillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_groove[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * naso-lacrimal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16679 ] + * s. lacrimalis maxillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_groove, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EHDAA2:0001238 * EHDAA:4770 * EMAPA:16679 - * UMLS:C1513875 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasolacrimal_Groove] + * UMLS:C1513875 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasolacrimal_Groove ] * VHOG:0001307 * Wikipedia:Lacrimal_groove * http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006466.md b/md/UBERON/66/UBERON_0006466.md index a01797ccca..3a52e31dbf 100644 --- a/md/UBERON/66/UBERON_0006466.md +++ b/md/UBERON/66/UBERON_0006466.md @@ -6,16 +6,16 @@ ## Synonyms - * T10 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1591] - * t10 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71176] - * tenth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1591] + * T10 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1591 ] + * t10 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71176 ] + * tenth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1591 ] ## Cross-references * FMA:71176 * NIF_GrossAnatomy:birnlex_1591 * SCTID:278772006 - * UMLS:C0457868 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1591] + * UMLS:C0457868 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1591 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006566.md b/md/UBERON/66/UBERON_0006566.md index b63bb303a9..49ae57310e 100644 --- a/md/UBERON/66/UBERON_0006566.md +++ b/md/UBERON/66/UBERON_0006566.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006566 * *Label* = left ventricle myocardium - * *Definition* = Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9558[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9558, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms - * Left ventricular myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9558] - * myocardium of left ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9558] + * Left ventricular myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9558 ] + * myocardium of left ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9558 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium of ventricle](../../UBERON/83/UBERON_0001083.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006666.md b/md/UBERON/66/UBERON_0006666.md index 463a67a780..aed92b9c11 100644 --- a/md/UBERON/66/UBERON_0006666.md +++ b/md/UBERON/66/UBERON_0006666.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006666 * *Label* = great cerebral vein - * *Definition* = The great cerebral vein is one of the large blood vessels in the skull draining the cerebrum (brain)[WP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_cerebral_vein] + * *Definition* = The great cerebral vein is one of the large blood vessels in the skull draining the cerebrum (brain)[WP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_cerebral_vein ] ## Synonyms - * great cerebral vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50993] - * great cerebral vein of Galen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50993] - * vein of Galen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50993] + * great cerebral vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50993 ] + * great cerebral vein of Galen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50993 ] + * vein of Galen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50993 ] ## Cross-references * EMAPA:19311 * FMA:50993 * SCTID:244396002 - * UMLS:C0042448 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Great_Cerebral_Vein_of_Galen] + * UMLS:C0042448 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Great_Cerebral_Vein_of_Galen ] * Wikipedia:Great_cerebral_vein * ncithesaurus:Great_Cerebral_Vein_of_Galen @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006766.md b/md/UBERON/66/UBERON_0006766.md index c51880f666..892200f6ad 100644 --- a/md/UBERON/66/UBERON_0006766.md +++ b/md/UBERON/66/UBERON_0006766.md @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium[FMA:4720]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006866.md b/md/UBERON/66/UBERON_0006866.md index 5bc2a75081..cab07d8a50 100644 --- a/md/UBERON/66/UBERON_0006866.md +++ b/md/UBERON/66/UBERON_0006866.md @@ -8,7 +8,7 @@ ## Synonyms * rectal part of digestive tract - * rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005756] + * rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005756 ] * terminal section of digestive tract ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0006966.md b/md/UBERON/66/UBERON_0006966.md index 07050072a2..052dca9509 100644 --- a/md/UBERON/66/UBERON_0006966.md +++ b/md/UBERON/66/UBERON_0006966.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006966 * *Label* = heart capillary - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003248] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003248 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capillary](../../UBERON/82/UBERON_0001982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0007166.md b/md/UBERON/66/UBERON_0007166.md index c71948348b..7e612fdf3f 100644 --- a/md/UBERON/66/UBERON_0007166.md +++ b/md/UBERON/66/UBERON_0007166.md @@ -6,7 +6,7 @@ ## Synonyms - * left dome of diaphragm viewed radiologically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13334] + * left dome of diaphragm viewed radiologically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13334 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0007266.md b/md/UBERON/66/UBERON_0007266.md index 1d44c8d313..1f095d909e 100644 --- a/md/UBERON/66/UBERON_0007266.md +++ b/md/UBERON/66/UBERON_0007266.md @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [vertebral bone 1](../../UBERON/92/UBERON_0001092.md) and [connects](../../ts/core#connects.md) some [vertebral bone 2](../../UBERON/93/UBERON_0001093.md) and [intervertebral disk](../../UBERON/66/UBERON_0001066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0007366.md b/md/UBERON/66/UBERON_0007366.md index a5aa48ab41..8aaa7adf24 100644 --- a/md/UBERON/66/UBERON_0007366.md +++ b/md/UBERON/66/UBERON_0007366.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007366 * *Label* = ruminant stomach - * *Definition* = The ruminants' stomach consists of four compartments: rumen, reticulum, omasum and abomasum. The first three compartments comprise the forestomach (proventriculus). They are lined with nonglandular membrane. The fourth compartment, the abomasum comprises the true stomach of the ruminants. It is lined with glandular mucous membrane. The rumen lies on the left of the abdominal cavity, the reticulum cranially and the omasum on the right. The abomasum lies ventrally, its proximal end lies ventral to the rumen, reticulum and omasum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.onemedicine.tuskegee.edu/DigestiveSystem/Stomach/Stomach_Ruminants.html] + * *Definition* = The ruminants' stomach consists of four compartments: rumen, reticulum, omasum and abomasum. The first three compartments comprise the forestomach (proventriculus). They are lined with nonglandular membrane. The fourth compartment, the abomasum comprises the true stomach of the ruminants. It is lined with glandular mucous membrane. The rumen lies on the left of the abdominal cavity, the reticulum cranially and the omasum on the right. The abomasum lies ventrally, its proximal end lies ventral to the rumen, reticulum and omasum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.onemedicine.tuskegee.edu/DigestiveSystem/Stomach/Stomach_Ruminants.html ] * *Comment* = Editor notes: Consider classifying each subdivision as 'stomach chamber' ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0008266.md b/md/UBERON/66/UBERON_0008266.md index 6d54cf6dbc..996e96242c 100644 --- a/md/UBERON/66/UBERON_0008266.md +++ b/md/UBERON/66/UBERON_0008266.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008266 * *Label* = periodontal ligament - * *Definition* = The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontal_fiber[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/21] + * *Definition* = The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontal_fiber, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/21 ] * *Comment* = AO notes: FMA treats periodontium and periodontal ligament as the same; it has a separate class desmodentium, which we place here even though it is classified as fetal in FMA ## Synonyms - * fibra periodontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periodontal fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periodontal fibre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * PDL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Periodontal_ligament] - * alveolar periosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * alveolodental ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * alveolodental membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * desmodontium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/desmodentium.html] - * odontoperiosteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * paradentium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * peridental membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * peridontal fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/desmodentium.html] - * peridontal fibre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/desmodentium.html] + * fibra periodontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periodontal fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periodontal fibre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * PDL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Periodontal_ligament ] + * alveolar periosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * alveolodental ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * alveolodental membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * desmodontium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/desmodentium.html ] + * odontoperiosteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * paradentium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * peridental membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * peridontal fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/desmodentium.html ] + * peridontal fibre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/desmodentium.html ] * peridontal ligament - * peridontal ligament fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/desmodentium.html] - * peridontal ligament fibre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/desmodentium.html] - * peridontal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] - * peridontium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001020] + * peridontal ligament fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/desmodentium.html ] + * peridontal ligament fibre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/desmodentium.html ] + * peridontal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] + * peridontium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001020 ] ## Cross-references @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ligament](../../UBERON/11/UBERON_0000211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [periodontium](../../UBERON/58/UBERON_0001758.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The collagen fibers, running from the cementum to the alveolar bone, that suspend a tooth in its socket; they include apical, oblique, horizontal, and alveolar crest fibers, indicating that the orientation of the fibers varies at different levels[http://www.drugs.com/dict/desmodentium.html]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP][BTO:0001020, Wikipedia:Periodontal_fiber, http://purl.obolibrary.org/obo/uberon/tracker/21]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0008866.md b/md/UBERON/66/UBERON_0008866.md index 388a1f21db..6126b4db9c 100644 --- a/md/UBERON/66/UBERON_0008866.md +++ b/md/UBERON/66/UBERON_0008866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008866 * *Label* = enamel knot - * *Definition* = a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010864] + * *Definition* = a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010864 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0009066.md b/md/UBERON/66/UBERON_0009066.md index 94093db203..157c83bb5d 100644 --- a/md/UBERON/66/UBERON_0009066.md +++ b/md/UBERON/66/UBERON_0009066.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0009566.md b/md/UBERON/66/UBERON_0009566.md index 7bbf1e0b09..2d5f14d988 100644 --- a/md/UBERON/66/UBERON_0009566.md +++ b/md/UBERON/66/UBERON_0009566.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009566 * *Label* = intestinal submucosa - * *Definition* = A submucosa that is part of a intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * submucosa of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15696] + * submucosa of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15696 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0009866.md b/md/UBERON/66/UBERON_0009866.md index bb98928c41..ffcde65a1f 100644 --- a/md/UBERON/66/UBERON_0009866.md +++ b/md/UBERON/66/UBERON_0009866.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0009966.md b/md/UBERON/66/UBERON_0009966.md index 4081a73c6e..162c029da6 100644 --- a/md/UBERON/66/UBERON_0009966.md +++ b/md/UBERON/66/UBERON_0009966.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009966 * *Label* = internodal tract - * *Definition* = Subdivision of conducting system of heart which consists of the anterior, middle and posterior internodal tracts beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9479] + * *Definition* = Subdivision of conducting system of heart which consists of the anterior, middle and posterior internodal tracts beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9479 ] * *Comment* = evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial[http://www.cvphysiology.com/Arrhythmias/A003.htm]. Editor note: include 3 subtypes? ## Synonyms * interatrial conduction tract * internodal conduction tract - * internodal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9479] - * internodal tract muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9479] + * internodal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9479 ] + * internodal tract muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9479 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010066.md b/md/UBERON/66/UBERON_0010066.md index 447754c31a..4a5b18add9 100644 --- a/md/UBERON/66/UBERON_0010066.md +++ b/md/UBERON/66/UBERON_0010066.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010066 * *Label* = tympanic plate - * *Definition* = The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_part_of_the_temporal_bone] + * *Definition* = The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_part_of_the_temporal_bone ] * *Comment* = Consider merging with tympanic ring. See discussion page on wikipedia page for ectotympanic. todo: distinguish ecto- and ento- tympanics ## Synonyms - * pars tympanica (os temporale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52880] - * tympanic part of temporal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52880] - * ectotympanic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ectotympanic] - * ectotympanic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ectotympanic] - * pars tympanica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_part_of_the_temporal_bone] - * pars tympanica ossis temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_part_of_the_temporal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tympanic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_part_of_the_temporal_bone] - * tympanic part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tympanic_part_of_the_temporal_bone] + * pars tympanica (os temporale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52880 ] + * tympanic part of temporal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52880 ] + * ectotympanic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ectotympanic ] + * ectotympanic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ectotympanic ] + * pars tympanica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_part_of_the_temporal_bone ] + * pars tympanica ossis temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_part_of_the_temporal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tympanic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_part_of_the_temporal_bone ] + * tympanic part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tympanic_part_of_the_temporal_bone ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010166.md b/md/UBERON/66/UBERON_0010166.md index f6b943832f..ea83a06519 100644 --- a/md/UBERON/66/UBERON_0010166.md +++ b/md/UBERON/66/UBERON_0010166.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010166 * *Label* = coat of hair - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coat_(animal)] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coat_(animal) ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010266.md b/md/UBERON/66/UBERON_0010266.md index a0c9254736..15231a6bdd 100644 --- a/md/UBERON/66/UBERON_0010266.md +++ b/md/UBERON/66/UBERON_0010266.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010266 * *Label* = arthropod hepatopancreas - * *Definition* = Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000597] + * *Definition* = Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000597 ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms * crustacean digestive gland - * midgut gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000597] + * midgut gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000597 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010266 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010366.md b/md/UBERON/66/UBERON_0010366.md index 4c29c1d2c6..9ba8622173 100644 --- a/md/UBERON/66/UBERON_0010366.md +++ b/md/UBERON/66/UBERON_0010366.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010366 * *Label* = conjunctival vasculature - * *Definition* = A vasculature that is part of a conjunctiva. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a conjunctiva. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * conjunctival veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70887] - * conjunctival veins set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70887] - * set of conjunctival veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70887] - * venae conjunctivales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * conjunctival veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70887 ] + * conjunctival veins set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70887 ] + * set of conjunctival veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70887 ] + * venae conjunctivales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [conjunctiva](../../UBERON/11/UBERON_0001811.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010566.md b/md/UBERON/66/UBERON_0010566.md index 7f70ab779a..a3a11ad6a7 100644 --- a/md/UBERON/66/UBERON_0010566.md +++ b/md/UBERON/66/UBERON_0010566.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010566 * *Label* = manual digit 2 metacarpus pre-cartilage condensation - * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 2 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000521] - * fore limb digit 2 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 2 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000521 ] + * fore limb digit 2 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal 2 pre-cartilage condensation - * hand digit 2 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 2 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2 mesenchyme](../../UBERON/92/UBERON_0005692.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0010866.md b/md/UBERON/66/UBERON_0010866.md index 30d6304e6e..c31bc39826 100644 --- a/md/UBERON/66/UBERON_0010866.md +++ b/md/UBERON/66/UBERON_0010866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010866 * *Label* = dactylopatagium major - * *Definition* = A dactylopatagium that is connected_to a manual digit 4 and connected_to a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dactylopatagium that is connected_to a manual digit 4 and connected_to a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [dactylopatagium](../../UBERON/62/UBERON_0010862.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011166.md b/md/UBERON/66/UBERON_0011166.md index a460d2b345..db32a35acd 100644 --- a/md/UBERON/66/UBERON_0011166.md +++ b/md/UBERON/66/UBERON_0011166.md @@ -8,7 +8,7 @@ * femorapatellar joint * femoropatellar joint - * patello femoral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:PatelloFemoralJoint] + * patello femoral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:PatelloFemoralJoint ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011266.md b/md/UBERON/66/UBERON_0011266.md index 6363f734c2..e8869fa8ad 100644 --- a/md/UBERON/66/UBERON_0011266.md +++ b/md/UBERON/66/UBERON_0011266.md @@ -7,7 +7,7 @@ ## Synonyms - * auricularis superior tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53843] + * auricularis superior tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53843 ] ## Cross-references @@ -27,9 +27,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011266 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_0011366.md b/md/UBERON/66/UBERON_0011366.md index 78db24a4ee..b6b5dde92d 100644 --- a/md/UBERON/66/UBERON_0011366.md +++ b/md/UBERON/66/UBERON_0011366.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011366 * *Label* = cleidobrachialis muscle - * *Definition* = This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:376] + * *Definition* = This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:376 ] ## Synonyms - * cleidobrachial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002274] + * cleidobrachial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002274 ] * cleidobrachial muscle * cleidobrachialis ## Cross-references * MA:0002274 - * UMLS:C1707411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cleidobrachial] + * UMLS:C1707411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cleidobrachial ] * ncithesaurus:Cleidobrachial ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [attaches_to](../../RO/71/RO_0002371.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cleidocephalicus muscle](../../UBERON/64/UBERON_0011364.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011366 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011566.md b/md/UBERON/66/UBERON_0011566.md index 34c7742276..f06ba294b0 100644 --- a/md/UBERON/66/UBERON_0011566.md +++ b/md/UBERON/66/UBERON_0011566.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011566 * *Label* = lumen of esophagus - * *Definition* = An anatomical cavity that is part of a esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * cavity of eosophagus - * cavity of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9398] + * cavity of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9398 ] * eosophageal cavity * eosophageal lumen * eosophagus lumen - * esophageal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9398] - * esophageal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9398] - * esophagus lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9398] + * esophageal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9398 ] + * esophageal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9398 ] + * esophagus lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9398 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011566 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011666.md b/md/UBERON/66/UBERON_0011666.md index 062efae1b6..fe05f725e3 100644 --- a/md/UBERON/66/UBERON_0011666.md +++ b/md/UBERON/66/UBERON_0011666.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011666 * *Label* = peripheral plate of carapace - * *Definition* = One of a series of bones around the edge of the carapace. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = One of a series of bones around the edge of the carapace. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011766.md b/md/UBERON/66/UBERON_0011766.md index 9019abe414..161049a291 100644 --- a/md/UBERON/66/UBERON_0011766.md +++ b/md/UBERON/66/UBERON_0011766.md @@ -7,8 +7,8 @@ ## Synonyms - * left recurrent laryngeal branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25350] - * left recurrent laryngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14469] + * left recurrent laryngeal branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25350 ] + * left recurrent laryngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14469 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011866.md b/md/UBERON/66/UBERON_0011866.md index 99f6524910..503bdc385e 100644 --- a/md/UBERON/66/UBERON_0011866.md +++ b/md/UBERON/66/UBERON_0011866.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011866 * *Label* = condylar joint - * *Definition* = In a condyloid joint (condyloid articulation, ellipsoidal joint) an ovoid articular surface, or condyle, is received into an elliptical cavity. This permits movement in two planes, allowing flexion, extension, adduction, abduction, and circumduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] + * *Definition* = In a condyloid joint (condyloid articulation, ellipsoidal joint) an ovoid articular surface, or condyle, is received into an elliptical cavity. This permits movement in two planes, allowing flexion, extension, adduction, abduction, and circumduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] ## Synonyms - * articulatio ellipsoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * condylar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] - * condyloid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] - * condyloid articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] - * condyloid joints [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] - * ellipsoidal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyloid_joint] + * articulatio ellipsoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * condylar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] + * condyloid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] + * condyloid articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] + * condyloid joints [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] + * ellipsoidal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyloid_joint ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011866 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0011966.md b/md/UBERON/66/UBERON_0011966.md index 3fd022a91a..d754ee5df0 100644 --- a/md/UBERON/66/UBERON_0011966.md +++ b/md/UBERON/66/UBERON_0011966.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011966 * *Label* = manubriosternal joint - * *Definition* = the early union, by hyaline cartilage, of the manubrium and the body of the sternum, which later becomes a symphysial type of joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=46395] + * *Definition* = the early union, by hyaline cartilage, of the manubrium and the body of the sternum, which later becomes a symphysial type of joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=46395 ] ## Synonyms - * manubriosternal symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7502] - * angle of louis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * angulus ludovici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * angulus sternalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * angulus sterni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * manubriosternal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * manubriosternal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] - * manubro-sterno junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternal_angle] + * manubriosternal symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7502 ] + * angle of louis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * angulus ludovici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * angulus sternalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * angulus sterni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * manubriosternal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * manubriosternal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] + * manubro-sterno junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternal_angle ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [body of sternum](../../UBERON/20/UBERON_0006820.md) and [connects](../../ts/core#connects.md) some [manubrium of sternum](../../UBERON/05/UBERON_0002205.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011966 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0012066.md b/md/UBERON/66/UBERON_0012066.md index 85cef8e8f2..c517c09fd9 100644 --- a/md/UBERON/66/UBERON_0012066.md +++ b/md/UBERON/66/UBERON_0012066.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012066 * *Label* = lobar bronchus of left lung lower lobe - * *Definition* = A lobar bronchus that is part of a lower lobe of left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lobar bronchus that is part of a lower lobe of left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus of left lower lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7432] - * left inferior lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7432] - * left lower lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7432] - * left lower lobe bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7432] + * bronchus of left lower lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7432 ] + * left inferior lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7432 ] + * left lower lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7432 ] + * left lower lobe bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7432 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of left lung](../../UBERON/53/UBERON_0008953.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012066 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0012466.md b/md/UBERON/66/UBERON_0012466.md index 46ed5a59d5..ac0ffe1199 100644 --- a/md/UBERON/66/UBERON_0012466.md +++ b/md/UBERON/66/UBERON_0012466.md @@ -30,8 +30,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0013166.md b/md/UBERON/66/UBERON_0013166.md index 697be37fca..119d2f06d9 100644 --- a/md/UBERON/66/UBERON_0013166.md +++ b/md/UBERON/66/UBERON_0013166.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013166 * *Label* = vallecula of cerebellum - * *Definition* = On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vallecula_of_cerebellum] + * *Definition* = On the upper surface of the cerebellum the vermis is elevated above the level of the hemispheres, but on the under surface it is sunk almost out of sight in the bottom of a deep depression between them; this depression is called the vallecula of the cerebellum, and lodges the posterior part of the medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vallecula_of_cerebellum ] ## Synonyms - * vallecula cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75267[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vallecula cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75267, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013166 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0013466.md b/md/UBERON/66/UBERON_0013466.md index 52a28eea84..08e3008baf 100644 --- a/md/UBERON/66/UBERON_0013466.md +++ b/md/UBERON/66/UBERON_0013466.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013466 * *Label* = zygomasseteric system - * *Definition* = The zygomasseteric system (or zygomasseteric structure) in rodents is the anatomical arrangement of the masseter muscle of the jaw and the zygomatic arch of the skull. The anteroposterior or propalinal (front-to-back) motion of the rodent jaw is enabled by an extension of the zygomatic arch and the division of the masseter into three distinct parts. The main types are described as protrogomorphous, sciuromorphous, hystricomorphous, and myomorphous. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomasseteric_system] + * *Definition* = The zygomasseteric system (or zygomasseteric structure) in rodents is the anatomical arrangement of the masseter muscle of the jaw and the zygomatic arch of the skull. The anteroposterior or propalinal (front-to-back) motion of the rodent jaw is enabled by an extension of the zygomatic arch and the division of the masseter into three distinct parts. The main types are described as protrogomorphous, sciuromorphous, hystricomorphous, and myomorphous. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomasseteric_system ] * *Comment* = obsoleted as it did not represent a structure ## Synonyms @@ -27,9 +27,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013466 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_0013766.md b/md/UBERON/66/UBERON_0013766.md index 47a6b21dfa..eab1ac9612 100644 --- a/md/UBERON/66/UBERON_0013766.md +++ b/md/UBERON/66/UBERON_0013766.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013766 * *Label* = epicanthal fold - * *Definition* = A fold of skin of the upper eyelid that partially covers the inner corner of the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VT:0006168] + * *Definition* = A fold of skin of the upper eyelid that partially covers the inner corner of the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VT:0006168 ] ## Synonyms * epicanthic fold * epicanthus * eye fold - * plica palpebronasalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plica palpebronasalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * [skin of eyelid](../../UBERON/57/UBERON_0001457.md) * [part_of](../../BFO/50/BFO_0000050.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [inner canthus](../../UBERON/11/UBERON_0005611.md) ## Equivalencies @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0014466.md b/md/UBERON/66/UBERON_0014466.md index 8909ff4332..1bec10fc41 100644 --- a/md/UBERON/66/UBERON_0014466.md +++ b/md/UBERON/66/UBERON_0014466.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014466 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0014666.md b/md/UBERON/66/UBERON_0014666.md index f9c95a0bf6..0918469252 100644 --- a/md/UBERON/66/UBERON_0014666.md +++ b/md/UBERON/66/UBERON_0014666.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014666 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_0014766.md b/md/UBERON/66/UBERON_0014766.md index 694292f868..fff2cf29c6 100644 --- a/md/UBERON/66/UBERON_0014766.md +++ b/md/UBERON/66/UBERON_0014766.md @@ -6,8 +6,8 @@ ## Synonyms - * right crus of diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58286] - * right crus of lumbar part of diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58286] + * right crus of diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58286 ] + * right crus of lumbar part of diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58286 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crus of diaphragm](../../UBERON/65/UBERON_0014765.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014766 + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000266.md b/md/UBERON/66/UBERON_2000266.md index e1eabe2b89..d3e43ea44c 100644 --- a/md/UBERON/66/UBERON_2000266.md +++ b/md/UBERON/66/UBERON_2000266.md @@ -6,7 +6,7 @@ ## Synonyms - * pretectomamillary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000266] + * pretectomamillary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000266 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000466.md b/md/UBERON/66/UBERON_2000466.md index b840ac51d0..bc4df07176 100644 --- a/md/UBERON/66/UBERON_2000466.md +++ b/md/UBERON/66/UBERON_2000466.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000666.md b/md/UBERON/66/UBERON_2000666.md index 17c6140092..4c96e2defc 100644 --- a/md/UBERON/66/UBERON_2000666.md +++ b/md/UBERON/66/UBERON_2000666.md @@ -6,7 +6,7 @@ ## Synonyms - * filamental arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000666[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * filamental arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000666, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000766.md b/md/UBERON/66/UBERON_2000766.md index 24df46da05..9975d82069 100644 --- a/md/UBERON/66/UBERON_2000766.md +++ b/md/UBERON/66/UBERON_2000766.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000866.md b/md/UBERON/66/UBERON_2000866.md index 25b78ff3fd..ceb9d7b960 100644 --- a/md/UBERON/66/UBERON_2000866.md +++ b/md/UBERON/66/UBERON_2000866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000866 * *Label* = epaxial region somite 15 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2000966.md b/md/UBERON/66/UBERON_2000966.md index 67e6aae23a..0d0e8afd7e 100644 --- a/md/UBERON/66/UBERON_2000966.md +++ b/md/UBERON/66/UBERON_2000966.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000966[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000966, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_2001166.md b/md/UBERON/66/UBERON_2001166.md index d860067354..1ca0bae3b8 100644 --- a/md/UBERON/66/UBERON_2001166.md +++ b/md/UBERON/66/UBERON_2001166.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001266.md b/md/UBERON/66/UBERON_2001266.md index 6109e6f567..fcde20a55e 100644 --- a/md/UBERON/66/UBERON_2001266.md +++ b/md/UBERON/66/UBERON_2001266.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001266 * *Label* = ovarian follicle stage III - * *Definition* = Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001366.md b/md/UBERON/66/UBERON_2001366.md index b7b7f6a585..60aefee0e4 100644 --- a/md/UBERON/66/UBERON_2001366.md +++ b/md/UBERON/66/UBERON_2001366.md @@ -6,7 +6,7 @@ ## Synonyms - * TPOC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001366] + * TPOC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001366 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001566.md b/md/UBERON/66/UBERON_2001566.md index fbfdbe3cca..c82b1075dd 100644 --- a/md/UBERON/66/UBERON_2001566.md +++ b/md/UBERON/66/UBERON_2001566.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/66/UBERON_2001666.md b/md/UBERON/66/UBERON_2001666.md index 17144870ad..e0b778c175 100644 --- a/md/UBERON/66/UBERON_2001666.md +++ b/md/UBERON/66/UBERON_2001666.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001666 * *Label* = rudimentary neural arch - * *Definition* = Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001766.md b/md/UBERON/66/UBERON_2001766.md index 25e4bdfe89..8f167d026f 100644 --- a/md/UBERON/66/UBERON_2001766.md +++ b/md/UBERON/66/UBERON_2001766.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001766 * *Label* = pectoral fin lepidotrichium 6 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001766] + * pectoral fin ray 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001766 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001866.md b/md/UBERON/66/UBERON_2001866.md index 6dfa858727..81a0b7174b 100644 --- a/md/UBERON/66/UBERON_2001866.md +++ b/md/UBERON/66/UBERON_2001866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001866 * *Label* = basibranchial 5 cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 5 element](../../UBERON/19/UBERON_2001919.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2001966.md b/md/UBERON/66/UBERON_2001966.md index 7ac8c909dd..77d3d928e8 100644 --- a/md/UBERON/66/UBERON_2001966.md +++ b/md/UBERON/66/UBERON_2001966.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2002066.md b/md/UBERON/66/UBERON_2002066.md index cf5bc080a2..ee482dde4f 100644 --- a/md/UBERON/66/UBERON_2002066.md +++ b/md/UBERON/66/UBERON_2002066.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002066 * *Label* = auditory fenestra - * *Definition* = Opening in the neurocranium to allow communication between the swimbladder and the inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Opening in the neurocranium to allow communication between the swimbladder and the inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2002166.md b/md/UBERON/66/UBERON_2002166.md index 90be6290dd..41fd697dac 100644 --- a/md/UBERON/66/UBERON_2002166.md +++ b/md/UBERON/66/UBERON_2002166.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002166 * *Label* = pseudourostyle - * *Definition* = An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2002266.md b/md/UBERON/66/UBERON_2002266.md index 66d6537f0e..69d85d283e 100644 --- a/md/UBERON/66/UBERON_2002266.md +++ b/md/UBERON/66/UBERON_2002266.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2005066.md b/md/UBERON/66/UBERON_2005066.md index 34b471d488..af881b4255 100644 --- a/md/UBERON/66/UBERON_2005066.md +++ b/md/UBERON/66/UBERON_2005066.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005066 * *Label* = bulbus arteriosus outer layer - * *Definition* = Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * bulbus arteriosus externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005066] + * bulbus arteriosus externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005066 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2005266.md b/md/UBERON/66/UBERON_2005266.md index c7e5453acb..0e9bda3580 100644 --- a/md/UBERON/66/UBERON_2005266.md +++ b/md/UBERON/66/UBERON_2005266.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005266 * *Label* = pterotic fossa - * *Definition* = Fossa on the pterotic where the hyomandibula articulates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-192] + * *Definition* = Fossa on the pterotic where the hyomandibula articulates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-192 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T06:50:18Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_2005366.md b/md/UBERON/66/UBERON_2005366.md index 27ecb88ba4..1a34d3404a 100644 --- a/md/UBERON/66/UBERON_2005366.md +++ b/md/UBERON/66/UBERON_2005366.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_3000166.md b/md/UBERON/66/UBERON_3000166.md index fcd06dce5e..f50d226d88 100644 --- a/md/UBERON/66/UBERON_3000166.md +++ b/md/UBERON/66/UBERON_3000166.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000166 * *Label* = fenestra nasobasalis - * *Definition* = Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small opening at the anterior tip of the nasal capsule, on the floor of the cavum inferius. It is located medially to the base of the inferior prenasal cartilage and serves for the passage of the ramus medialis narium and arteria orbitonasalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * basal fenestra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000166] - * fenestra basalis nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000166] - * foramen apicale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000166] - * foramen epiphaniale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000166] - * nasobasal fenestra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000166] + * basal fenestra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000166 ] + * fenestra basalis nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000166 ] + * foramen apicale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000166 ] + * foramen epiphaniale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000166 ] + * nasobasal fenestra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000166 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_3000866.md b/md/UBERON/66/UBERON_3000866.md index 1eda35471b..65b8e0ce16 100644 --- a/md/UBERON/66/UBERON_3000866.md +++ b/md/UBERON/66/UBERON_3000866.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000866 * *Label* = agger limitans anterior of ilium - * *Definition* = Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_3000966.md b/md/UBERON/66/UBERON_3000966.md index 168aad07c0..023b4e42a4 100644 --- a/md/UBERON/66/UBERON_3000966.md +++ b/md/UBERON/66/UBERON_3000966.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000966 * *Label* = angulosplenial - * *Definition* = Dermal bone of anuran lower jaw investing lingual and ventral surfaces of Meckel's cartilage; forming coronoid process and articulating with palatoquadrate posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dermal bone of anuran lower jaw investing lingual and ventral surfaces of Meckel's cartilage; forming coronoid process and articulating with palatoquadrate posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms - * angular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000966] - * goniale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000966] + * angular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000966 ] + * goniale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000966 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_3010166.md b/md/UBERON/66/UBERON_3010166.md index 4428206948..79755c06dc 100644 --- a/md/UBERON/66/UBERON_3010166.md +++ b/md/UBERON/66/UBERON_3010166.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_3010566.md b/md/UBERON/66/UBERON_3010566.md index 1701aa22b7..347af1126f 100644 --- a/md/UBERON/66/UBERON_3010566.md +++ b/md/UBERON/66/UBERON_3010566.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_4000166.md b/md/UBERON/66/UBERON_4000166.md index ef5ae9b74f..92fdb441c1 100644 --- a/md/UBERON/66/UBERON_4000166.md +++ b/md/UBERON/66/UBERON_4000166.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000166 * *Label* = anal fin skeleton - * *Definition* = Median fin skeleton that is located posterior to the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Median fin skeleton that is located posterior to the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/66/UBERON_4200166.md b/md/UBERON/66/UBERON_4200166.md index ef7534556b..75d169024c 100644 --- a/md/UBERON/66/UBERON_4200166.md +++ b/md/UBERON/66/UBERON_4200166.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0000067.md b/md/UBERON/67/UBERON_0000067.md index e71c449ccf..54f6c4c33f 100644 --- a/md/UBERON/67/UBERON_0000067.md +++ b/md/UBERON/67/UBERON_0000067.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000067 * *Label* = embryo stage part - * *Definition* = A stage that is part of the embryo stage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A stage that is part of the embryo stage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [life cycle stage](../../UBERON/05/UBERON_0000105.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0000167.md b/md/UBERON/67/UBERON_0000167.md index 4148a86d61..a2fd107620 100644 --- a/md/UBERON/67/UBERON_0000167.md +++ b/md/UBERON/67/UBERON_0000167.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000167 * *Label* = oral cavity - * *Definition* = Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/references/reference_0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Anatomical cavity at the start of the digestive tract that that is enclosed by the mouth. The boundaries and contents vary depending on the species. In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/references/reference_0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * buccal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20292[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * buccal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20292, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * cavity of mouth * bucca @@ -28,7 +28,7 @@ * SCTID:181220002 * TAO:0001027 * TGMA:0000102 - * UMLS:C0226896 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oral_Cavity] + * UMLS:C0226896 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oral_Cavity ] * VHOG:0000188 * WBbt:0005255 * XAO:0000126 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [mouth](../../UBERON/65/UBERON_0000165.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cavity of the mouth, bounded by the jaw bones and associated structures (muscles and mucosa). [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Echinoderms, hemichordates, and chordates are called deuterostomes because the mouth arises not from the blastopore but from a second invagination at the anterior end of the larva that pushes in to connect with the archenteron.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0000467.md b/md/UBERON/67/UBERON_0000467.md index 1a39804ded..613ab97f1a 100644 --- a/md/UBERON/67/UBERON_0000467.md +++ b/md/UBERON/67/UBERON_0000467.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000467 * *Label* = anatomical system - * *Definition* = Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000011[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organ_system] + * *Definition* = Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000011, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organ_system ] ## Synonyms - * body system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_14] + * body system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_14 ] * organ system - * system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048731] + * system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048731 ] ## Cross-references @@ -32,7 +32,7 @@ * SCTID:278195005 * TAO:0001439 * TGMA:0001831 - * UMLS:C0460002 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Organ_System] + * UMLS:C0460002 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Organ_System ] * VHOG:0001725 * WBbt:0005746 * WBbt:0005763 @@ -63,9 +63,10 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[CARO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000467 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/EHDAA2_0001330 +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_0000967.md b/md/UBERON/67/UBERON_0000967.md index 19d489cc0e..f204efc46c 100644 --- a/md/UBERON/67/UBERON_0000967.md +++ b/md/UBERON/67/UBERON_0000967.md @@ -6,11 +6,11 @@ ## Synonyms - * arthropod sensillum of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sensillum of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arthropod sensillum of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sensillum of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * thoracic sensillum - * thorax arthropod sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thorax sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thorax arthropod sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thorax sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004245 * *[consider](../../er/oboInOwl#consider.md)* = MAT:0000205 * *[consider](../../er/oboInOwl#consider.md)* = MIAA:0000205 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000967 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_0001067.md b/md/UBERON/67/UBERON_0001067.md index 00dddbc3de..1c53b730b7 100644 --- a/md/UBERON/67/UBERON_0001067.md +++ b/md/UBERON/67/UBERON_0001067.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001067 * *Label* = vertebral arch joint - * *Definition* = a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygapophysial_joint] + * *Definition* = a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygapophysial_joint ] ## Synonyms * facet joint * joint of vertebral arch * joint of vertebral articular process - * spinal facet joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0008482] + * spinal facet joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0008482 ] * zygapophyseal joint * zygapophysial joint - * articulationes zygapophysiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygapophysial_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulationes zygapophysiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygapophysial_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A02.835.583.979 * OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA * SCTID:89836005 - * UMLS:C0224521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facet_Joint] + * UMLS:C0224521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facet_Joint ] * Wikipedia:Zygapophysial_joint * http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [inferior articular process of vertebra](../../UBERON/80/UBERON_0001080.md) and [connects](../../ts/core#connects.md) some [superior articular process of vertebra](../../UBERON/79/UBERON_0001079.md) and [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001167.md b/md/UBERON/67/UBERON_0001167.md index 94a5444755..ca5858effb 100644 --- a/md/UBERON/67/UBERON_0001167.md +++ b/md/UBERON/67/UBERON_0001167.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001167 * *Label* = wall of stomach - * *Definition* = An anatomical wall that is part of a stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anatomical wall of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * gastric wall - * stomach anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * stomach anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * stomach wall - * ventriculus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ventriculus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001267.md b/md/UBERON/67/UBERON_0001267.md index 92a4e696ed..280a2dd5a5 100644 --- a/md/UBERON/67/UBERON_0001267.md +++ b/md/UBERON/67/UBERON_0001267.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001267 * *Label* = femoral nerve - * *Definition* = The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_nerve] + * *Definition* = The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * anterior crural nerve - * nervus femoralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femoral_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus femoralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femoral_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A08.800.800.720.450.250 * OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA * SCTID:181051004 - * UMLS:C0015808 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Femoral_Nerve] + * UMLS:C0015808 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Femoral_Nerve ] * VHOG:0001411 * Wikipedia:Femoral_nerve * http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001367.md b/md/UBERON/67/UBERON_0001367.md index 0edbcf3b83..4a8f2356a2 100644 --- a/md/UBERON/67/UBERON_0001367.md +++ b/md/UBERON/67/UBERON_0001367.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001367 * *Label* = external anal sphincter - * *Definition* = The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphincter_ani_externus_muscle] + * *Definition* = The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphincter_ani_externus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * external sphincter ani * musculus sphincter ani externus - * sphincter ani externus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sphincter ani externus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:21930 * MA:0001531 * SCTID:244969008 - * UMLS:C0224395 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Anal_Sphincter] + * UMLS:C0224395 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Anal_Sphincter ] * Wikipedia:Sphincter_ani_externus_muscle * http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001467.md b/md/UBERON/67/UBERON_0001467.md index 1968e5731b..b87a6df7cc 100644 --- a/md/UBERON/67/UBERON_0001467.md +++ b/md/UBERON/67/UBERON_0001467.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001467 * *Label* = shoulder - * *Definition* = In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Shoulder] + * *Definition* = In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Shoulder ] * *Comment* = AO notes: In FMA, the shoulder is part of the pectoral girdle region. in MA, shoulder structures like shoulder joints, bones, nerves etc are part of the shoulder and the forelimb. E.g. humerus is a shoulder bone ## Synonyms * shoulder region - * articulatio humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Shoulder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Shoulder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A01.378.800.750 * OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA * SCTID:361103004 - * UMLS:C0037004 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Shoulder] + * UMLS:C0037004 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Shoulder ] * VHOG:0000342 * Wikipedia:Shoulder * galen:Shoulder @@ -42,7 +42,7 @@ * [organism subdivision](../../UBERON/75/UBERON_0000475.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Equivalencies @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) endochondral elements of the early tetrapod shoulder develop from two centers of ossification, giving rise to a scapula and a 'coracoid'.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001567.md b/md/UBERON/67/UBERON_0001567.md index 66672b79d4..d0f487681e 100644 --- a/md/UBERON/67/UBERON_0001567.md +++ b/md/UBERON/67/UBERON_0001567.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001567 * *Label* = cheek - * *Definition* = Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cheek] + * *Definition* = Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cheek ] ## Synonyms - * buccae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cheek[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * jowl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cheek] + * buccae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cheek, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * jowl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cheek ] ## Cross-references @@ -20,7 +20,7 @@ * OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA * SCTID:182325008 * TAO:0002113 - * UMLS:C0007966 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cheek] + * UMLS:C0007966 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cheek ] * Wikipedia:Cheek * galen:Cheek * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = buccal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001667.md b/md/UBERON/67/UBERON_0001667.md index 3a6353677d..a8ccaca655 100644 --- a/md/UBERON/67/UBERON_0001667.md +++ b/md/UBERON/67/UBERON_0001667.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001667 * *Label* = tibialis posterior - * *Definition* = The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibialis_posterior_muscle] + * *Definition* = The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibialis_posterior_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * tibialis caudalis - * ibialis posticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000867] - * musculus tibialis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibialis_posterior_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior tibialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000867] - * tibialis posterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000867] + * ibialis posticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000867 ] + * musculus tibialis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibialis_posterior_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior tibialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000867 ] + * tibialis posterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000867 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:51099 * MA:0002394 * SCTID:361824007 - * UMLS:C1711425 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibialis_Caudalis] + * UMLS:C1711425 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibialis_Caudalis ] * Wikipedia:Tibialis_posterior_muscle * http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001767.md b/md/UBERON/67/UBERON_0001767.md index f034461865..3952c2e512 100644 --- a/md/UBERON/67/UBERON_0001767.md +++ b/md/UBERON/67/UBERON_0001767.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001767 * *Label* = posterior chamber of eyeball - * *Definition* = a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_chamber_of_eyeball] + * *Definition* = a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_chamber_of_eyeball ] * *Comment* = The posterior chamber should not be confused with vitreous chamber. ## Synonyms @@ -11,9 +11,9 @@ * camera posterior * eye posterior chamber * posterior chamber of eye - * c. posterior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_chamber_of_eyeball[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * camera oculi posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002086] - * camera posterior bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002086] + * c. posterior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_chamber_of_eyeball, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * camera oculi posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002086 ] + * camera posterior bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002086 ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002460 * OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA * SCTID:362504004 - * UMLS:C0229094 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Chamber_of_the_Eye] + * UMLS:C0229094 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Chamber_of_the_Eye ] * Wikipedia:Posterior_chamber_of_eyeball * http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001867.md b/md/UBERON/67/UBERON_0001867.md index 0a2980bed6..c972a69486 100644 --- a/md/UBERON/67/UBERON_0001867.md +++ b/md/UBERON/67/UBERON_0001867.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001867 * *Label* = cartilage of external ear - * *Definition* = A cartilage that is part of a external ear [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage that is part of a external ear [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * auricular region cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * auricular region of head cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of auricular region of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilage of outer ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * auricular region cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * auricular region of head cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of auricular region of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilage of outer ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * external ear cartilage - * outer ear cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * outer ear cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -22,7 +22,7 @@ * GAID:103 * MA:0001886 * MESH:A02.165.207 - * UMLS:C0013445 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Ear_Cartilage] + * UMLS:C0013445 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Ear_Cartilage ] * ncithesaurus:External_Ear_Cartilage ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [external ear](../../UBERON/91/UBERON_0001691.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0001967.md b/md/UBERON/67/UBERON_0001967.md index db78bb4bfe..d01884e1d3 100644 --- a/md/UBERON/67/UBERON_0001967.md +++ b/md/UBERON/67/UBERON_0001967.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001967 * *Label* = reticular lamina of epithelium - * *Definition* = a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://mw1.merriam-webster.com/medical/reticular%20lamina] + * *Definition* = a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://mw1.merriam-webster.com/medical/reticular%20lamina ] * *Comment* = This class represents a continuous sheet of reticular lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'lamina reticularis' represents a portion of substance on the scale of a single cell. ## Synonyms - * fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62924] - * lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62924[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0008004] - * reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62924] + * fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62924 ] + * lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62924, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0008004 ] + * reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62924 ] * reticular membrane ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002067.md b/md/UBERON/67/UBERON_0002067.md index 0c9a505aee..5df7286a61 100644 --- a/md/UBERON/67/UBERON_0002067.md +++ b/md/UBERON/67/UBERON_0002067.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002067 * *Label* = dermis - * *Definition* = The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editor notes: Consider adding a layer-of-skin grouping class for all skin layers ## Synonyms * vertebrate dermis - * corium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000294] - * corium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dermis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cutis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000294] + * corium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000294 ] + * corium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dermis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cutis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000294 ] ## Cross-references @@ -29,7 +29,7 @@ * MIAA:0000153 * SCTID:361696001 * TAO:0001119 - * UMLS:C0011646 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dermis] + * UMLS:C0011646 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dermis ] * VHOG:0000108 * Wikipedia:Dermis * XAO:0000217 @@ -68,8 +68,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When approaching controversies surrounding skin evolution, we need to remember that the skin consists of two layers, an epidermis and a dermis, not a single evolving structure. (...) It is little wonder that controversies about homology exist. If we think of the epidermis, the dermis, and their interactions as an evolving unit, then their specialized products (hair, feathers, and reptilian scales) are broadly homologous.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dermal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002167.md b/md/UBERON/67/UBERON_0002167.md index d43f67daa3..bc0c5ff852 100644 --- a/md/UBERON/67/UBERON_0002167.md +++ b/md/UBERON/67/UBERON_0002167.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002167 * *Label* = right lung - * *Definition* = Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_lung] + * *Definition* = Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_lung ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -18,7 +18,7 @@ * MA:0000426 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA * SCTID:361967000 - * UMLS:C0225706 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Lung] + * UMLS:C0225706 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Lung ] * VHOG:0000301 * Wikipedia:Right_lung * http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [pair of lungs](../../UBERON/70/UBERON_0000170.md) and [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002267.md b/md/UBERON/67/UBERON_0002267.md index 2e5a739eeb..810c68c623 100644 --- a/md/UBERON/67/UBERON_0002267.md +++ b/md/UBERON/67/UBERON_0002267.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002267 * *Label* = laterodorsal tegmental nucleus - * *Definition* = The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Laterodorsal_tegmental_nucleus] + * *Definition* = The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Laterodorsal_tegmental_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lateroposterior tegmental nucleus - * nucleus tegmentalis posterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77654[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anterodorsal tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LDT] - * nucleus tegmentalis posterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Laterodorsal_tegmental_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus tegmentalis posterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77654, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anterodorsal tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LDT ] + * nucleus tegmentalis posterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Laterodorsal_tegmental_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002367.md b/md/UBERON/67/UBERON_0002367.md index fb0cd7a726..7df608580e 100644 --- a/md/UBERON/67/UBERON_0002367.md +++ b/md/UBERON/67/UBERON_0002367.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002367 * *Label* = prostate gland - * *Definition* = The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030850[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostate] + * *Definition* = The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030850, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostate ] * *Comment* = TODO - FMA treats the gland as part of the prostate - see also FMA:74119. ## Synonyms - * male prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10668204] + * male prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10668204 ] * prostate - * prostata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * prostata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MIAA:0000078 * OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA * SCTID:181422007 - * UMLS:C0033572 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostate_Gland] + * UMLS:C0033572 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostate_Gland ] * VHOG:0001261 * Wikipedia:Prostate * galen:ProstateGland @@ -58,8 +58,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = prostatic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002467.md b/md/UBERON/67/UBERON_0002467.md index a065f3a268..adaca5bd3c 100644 --- a/md/UBERON/67/UBERON_0002467.md +++ b/md/UBERON/67/UBERON_0002467.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002467 * *Label* = filiform papilla - * *Definition* = The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Filiform_papilla] + * *Definition* = The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Filiform_papilla ] ## Synonyms - * filiform papilla of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54820] + * filiform papilla of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54820 ] * filiform papillae * filiform papillae set - * papillae filiformes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Filiform_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * papillae filiformes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Filiform_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * MA:0002678 * NIF_GrossAnatomy:birnlex_4104 * SCTID:58743008 - * UMLS:C0226966 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4104] - * UMLS:C0545782 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4104] - * UMLS:C0545782 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Filiform_Papilla] - * UMLS:C1267556 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4104] + * UMLS:C0226966 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4104 ] + * UMLS:C0545782 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4104 ] + * UMLS:C0545782 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Filiform_Papilla ] + * UMLS:C1267556 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4104 ] * Wikipedia:Filiform_papilla * http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002567.md b/md/UBERON/67/UBERON_0002567.md index 0c10e28213..9b8753bc13 100644 --- a/md/UBERON/67/UBERON_0002567.md +++ b/md/UBERON/67/UBERON_0002567.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002567 * *Label* = basal part of pons - * *Definition* = Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] + * *Definition* = Ventral subdivision of the pons which consists of the massive pontine pertuberance on pontine ventral surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] ## Synonyms - * basal portion of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] - * base of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] - * basilar part of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] - * pars basilaris pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pons proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] - * ventral portion of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72244] - * basal part of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:616] - * basilar pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:616] - * basis pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:616[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars anterior pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:616[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars ventralis pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:616[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal portion of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] + * base of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] + * basilar part of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] + * pars basilaris pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pons proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] + * ventral portion of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72244 ] + * basal part of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:616 ] + * basilar pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:616 ] + * basis pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:616, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars anterior pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:616, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars ventralis pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:616, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Bpons * FMA:72244 * NIF_GrossAnatomy:birnlex_1043 - * NeuroNames:616 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1043] - * UMLS:C0228427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1043] + * NeuroNames:616 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1043 ] + * UMLS:C0228427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1043 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002667.md b/md/UBERON/67/UBERON_0002667.md index e2d8091676..9072fac80a 100644 --- a/md/UBERON/67/UBERON_0002667.md +++ b/md/UBERON/67/UBERON_0002667.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002667 * *Label* = lateral septal nucleus - * *Definition* = Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1321] + * *Definition* = Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1321 ] ## Synonyms - * lateral parolfactory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61878] - * lateral septal nucleus (cajal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1321] - * lateral septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1321] - * lateral septum nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1321] - * nucleus lateralis septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:261[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus septalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:261[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus septi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:261[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral parolfactory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61878 ] + * lateral septal nucleus (cajal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1321 ] + * lateral septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1321 ] + * lateral septum nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1321 ] + * nucleus lateralis septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:261, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus septalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:261, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus septi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:261, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,8 +23,8 @@ * BM:Tel-Spt-SLN * FMA:61878 * NIF_GrossAnatomy:birnlex_1321 - * NeuroNames:261 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1321] - * UMLS:C0175232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1321] + * NeuroNames:261 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1321 ] + * UMLS:C0175232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1321 ] ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral septal complex](../../UBERON/28/UBERON_0007628.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002767.md b/md/UBERON/67/UBERON_0002767.md index 2f448816ab..f21fb20d65 100644 --- a/md/UBERON/67/UBERON_0002767.md +++ b/md/UBERON/67/UBERON_0002767.md @@ -6,16 +6,16 @@ ## Synonyms - * sulcus rostralis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1642] - * iros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1642[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * sulcus rostralis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1642 ] + * iros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1642, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:iros * FMA:83767 * NIF_GrossAnatomy:birnlex_1642 - * NeuroNames:75 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1642] - * UMLS:C0694584 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1642] + * NeuroNames:75 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1642 ] + * UMLS:C0694584 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1642 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002867.md b/md/UBERON/67/UBERON_0002867.md index 5e637d2b1a..a4916cc4cc 100644 --- a/md/UBERON/67/UBERON_0002867.md +++ b/md/UBERON/67/UBERON_0002867.md @@ -6,20 +6,20 @@ ## Synonyms - * central gray matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2638] - * medullary central gray substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72595] - * CGM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2638[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * central gray of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:756] - * central gray substance of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:756] - * griseum periventriculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:756[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central gray matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2638 ] + * medullary central gray substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72595 ] + * CGM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2638, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * central gray of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:756 ] + * central gray substance of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:756 ] + * griseum periventriculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:756, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:CGM * FMA:72595 * NIF_GrossAnatomy:birnlex_2638 - * NeuroNames:756 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2638] - * UMLS:C0262207 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2638] + * NeuroNames:756 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2638 ] + * UMLS:C0262207 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2638 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0002967.md b/md/UBERON/67/UBERON_0002967.md index d734029f99..495054d650 100644 --- a/md/UBERON/67/UBERON_0002967.md +++ b/md/UBERON/67/UBERON_0002967.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002967 * *Label* = cingulate gyrus - * *Definition* = A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cingulate_gyrus] + * *Definition* = A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cingulate_gyrus ] ## Synonyms - * cingulate area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62434] - * cingulate region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62434] - * falciform lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62434] - * upper limbic gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62434] - * central gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CG] - * central grey matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CG] - * cingular gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:159] - * gyri cinguli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:159[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cingulate area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62434 ] + * cingulate region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62434 ] + * falciform lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62434 ] + * upper limbic gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62434 ] + * central gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CG ] + * central grey matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CG ] + * cingular gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:159 ] + * gyri cinguli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:159, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,10 +24,10 @@ * BTO:0003976 * FMA:62434 * NIF_GrossAnatomy:birnlex_798 - * NeuroNames:159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_798] + * NeuroNames:159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_798 ] * SCTID:279208003 - * UMLS:C0018427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_798] - * UMLS:C0018427 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cingulate_Gyrus] + * UMLS:C0018427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_798 ] + * UMLS:C0018427 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cingulate_Gyrus ] * Wikipedia:Cingulate_gyrus * http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png * ncithesaurus:Cingulate_Gyrus @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003067.md b/md/UBERON/67/UBERON_0003067.md index f988641638..d5a2d02bd6 100644 --- a/md/UBERON/67/UBERON_0003067.md +++ b/md/UBERON/67/UBERON_0003067.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003067 * *Label* = dorsolateral placode - * *Definition* = Lateral neurogenic placodes positioned dorsal of the epibranchial placodes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lateral neurogenic placodes positioned dorsal of the epibranchial placodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The only remaining dorsolateral placode in land vertebrates is the otic/octaval placode ## Synonyms - * dorsolateral placodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001310[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dorsolateral placodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001310, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In summary, the collective term 'placodes' refers to some rather different structures, probably with different evolutionary origins. Some sensory placodes (at least the otic and olfactory) may have homologues in basal chordates. Even if this is so, it is apparent that they were elaborated considerably during early vertebrate evolution. Epibranchial and dorsolateral placodes appear to be new; we infer that their origin depended on the evolution of specific inductive signals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003167.md b/md/UBERON/67/UBERON_0003167.md index cc460041d9..19809a86e0 100644 --- a/md/UBERON/67/UBERON_0003167.md +++ b/md/UBERON/67/UBERON_0003167.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004536 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000457 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003167 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_0003267.md b/md/UBERON/67/UBERON_0003267.md index 5f40729253..015a348fc4 100644 --- a/md/UBERON/67/UBERON_0003267.md +++ b/md/UBERON/67/UBERON_0003267.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003267 * *Label* = tooth of upper jaw - * *Definition* = A calcareous tooth that is part of a upper jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A calcareous tooth that is part of a upper jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: Note that we follow EHDAA2 and consider teeth part of the jaw skeleton ## Synonyms - * upper jaw tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001909] + * upper jaw tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001909 ] ## Cross-references * EHDAA:8045 * EMAPA:17938 * MA:0001909 - * UMLS:C1710581 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Jaw_Tooth] + * UMLS:C1710581 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Jaw_Tooth ] * ncithesaurus:Upper_Jaw_Tooth ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003367.md b/md/UBERON/67/UBERON_0003367.md index 62e4972475..ead2884f87 100644 --- a/md/UBERON/67/UBERON_0003367.md +++ b/md/UBERON/67/UBERON_0003367.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003367 * *Label* = epithelium of vomeronasal organ - * *Definition* = An epithelium that is part of a vomeronasal organ [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a vomeronasal organ [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Jacobson's organ epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Jacobson's organ epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of Jacobson's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of vomeronasal organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of Jacobson's organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vomeronasal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004102] - * vomeronasal organ epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vomeronasal organ epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vomeronasal organ sensory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001328] + * Jacobson's organ epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Jacobson's organ epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of Jacobson's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of vomeronasal organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of Jacobson's organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vomeronasal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004102 ] + * vomeronasal organ epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vomeronasal organ epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vomeronasal organ sensory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001328 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vomeronasal organ](../../UBERON/55/UBERON_0002255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003467.md b/md/UBERON/67/UBERON_0003467.md index 31214b0898..30d7f48cc7 100644 --- a/md/UBERON/67/UBERON_0003467.md +++ b/md/UBERON/67/UBERON_0003467.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003467 * *Label* = sesamoid bone of gastrocnemius - * *Definition* = A small sesamoid bone situated behind a condyle of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009005[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fabella[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834] + * *Definition* = A small sesamoid bone situated behind a condyle of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009005, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fabella, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834 ] ## Synonyms - * gastrocnemius sesamoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * m. gastrocnemius sesamoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sesamoid bone of m. gastrocnemius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fabella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001378] + * gastrocnemius sesamoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * m. gastrocnemius sesamoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sesamoid bone of m. gastrocnemius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fabella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001378 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003567.md b/md/UBERON/67/UBERON_0003567.md index 780231fc23..98508d7f9a 100644 --- a/md/UBERON/67/UBERON_0003567.md +++ b/md/UBERON/67/UBERON_0003567.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003567 * *Label* = abdomen connective tissue - * *Definition* = A portion of connective tissue that is part of an abdomen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of an abdomen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * abdomen portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdomen textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdomen textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003667.md b/md/UBERON/67/UBERON_0003667.md index f5b2fa46a9..8932561b27 100644 --- a/md/UBERON/67/UBERON_0003667.md +++ b/md/UBERON/67/UBERON_0003667.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003667 * *Label* = lower jaw molar - * *Definition* = A molar tooth that is part of a lower jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A molar tooth that is part of a lower jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lower jaw molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * molar tooth of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower primary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84213] - * lower molar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lower permanent molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55721] - * lower secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55721] - * mandibular secondary molar tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55721] + * lower jaw molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * molar tooth of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower primary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84213 ] + * lower molar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lower permanent molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55721 ] + * lower secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55721 ] + * mandibular secondary molar tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55721 ] ## Cross-references @@ -23,7 +23,7 @@ * EMAPA:17921 * FMA:55721 * MA:0001602 - * UMLS:C1708756 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Jaw_Molar] + * UMLS:C1708756 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Jaw_Molar ] * ncithesaurus:Lower_Jaw_Molar ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [molar tooth](../../UBERON/55/UBERON_0003655.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003867.md b/md/UBERON/67/UBERON_0003867.md index 6af0f5704d..937591c45a 100644 --- a/md/UBERON/67/UBERON_0003867.md +++ b/md/UBERON/67/UBERON_0003867.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003867 * *Label* = distal phalanx of pes - * *Definition* = A distal phalanx that is part of a pedal digit [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A distal phalanx that is part of a pedal digit [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This is typically proximally connected to the middle phalanx of pes, except in some cases such as the human big toe, where it connects to the proximal phalanx. It always connects to some phalanx, by definition ## Synonyms * distal pedal phalanx * distal phalanx of foot - * distal phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75830] - * foot distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001380] - * terminal phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * terminal phalanx of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * ungual phalanx of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=67679] - * ungual phalanx of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=67679] + * distal phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75830 ] + * foot distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001380 ] + * terminal phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * terminal phalanx of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * ungual phalanx of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=67679 ] + * ungual phalanx of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=67679 ] ## Cross-references * FMA:75830 * MA:0001380 * SCTID:361797001 - * UMLS:C0224026 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Distal_Phalanx_of_Foot] + * UMLS:C0224026 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Distal_Phalanx_of_Foot ] * ncithesaurus:Distal_Phalanx_of_Foot ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0003967.md b/md/UBERON/67/UBERON_0003967.md index 8a88f5cee9..f0365153e5 100644 --- a/md/UBERON/67/UBERON_0003967.md +++ b/md/UBERON/67/UBERON_0003967.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003967 * *Label* = cutaneous elastic tissue - * *Definition* = the slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008418] + * *Definition* = the slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008418 ] ## Synonyms - * cutaneous elastic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008418] - * dermal elastic fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008418] + * cutaneous elastic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008418 ] + * dermal elastic fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008418 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [elastic tissue](../../UBERON/21/UBERON_0002521.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004067.md b/md/UBERON/67/UBERON_0004067.md index ae8ecc2f18..fb7673a7e5 100644 --- a/md/UBERON/67/UBERON_0004067.md +++ b/md/UBERON/67/UBERON_0004067.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004067 * *Label* = lateral nasal prominence - * *Definition* = the lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009902[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_nasal_prominence] + * *Definition* = the lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009902, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_nasal_prominence ] ## Synonyms - * lateral nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000916] - * latero-nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16805] - * lateral nasal swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * prominentia nasalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_nasal_prominence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000916 ] + * latero-nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16805 ] + * lateral nasal swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * prominentia nasalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_nasal_prominence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004167.md b/md/UBERON/67/UBERON_0004167.md index 4fe7ff5e26..671c03b508 100644 --- a/md/UBERON/67/UBERON_0004167.md +++ b/md/UBERON/67/UBERON_0004167.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004167 * *Label* = orbitofrontal cortex - * *Definition* = the region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021769[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004170] + * *Definition* = the region of the cerebral cortex covering the basal surface of the frontal lobes; this region normally controls emotion and decision making [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021769, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004170 ] * *Comment* = note that this is a gyrus in FMA ## Synonyms * fronto-orbital cortex - * orbital frontal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:OFC[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1049] + * orbital frontal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:OFC, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1049 ] * orbito-frontal cortex ## Cross-references @@ -18,7 +18,7 @@ * FMA:242003 * NIF_GrossAnatomy:birnlex_1049 * NeuroNames:91 - * UMLS:C0152301 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1049] + * UMLS:C0152301 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1049 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004267.md b/md/UBERON/67/UBERON_0004267.md index 574bfb81f8..8f6d6cbbd8 100644 --- a/md/UBERON/67/UBERON_0004267.md +++ b/md/UBERON/67/UBERON_0004267.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004267 * *Label* = back connective tissue - * *Definition* = A portion of connective tissue that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * back portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * back textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * back portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * back textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004367.md b/md/UBERON/67/UBERON_0004367.md index 43788598f4..b46642b03e 100644 --- a/md/UBERON/67/UBERON_0004367.md +++ b/md/UBERON/67/UBERON_0004367.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004367 * *Label* = Descemet's membrane - * *Definition* = transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004285] + * *Definition* = transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004285 ] ## Synonyms * Descemet membrane - * Descemet's posterior elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58309] - * lamina limitans posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58309] - * posterior limiting lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001246] - * posterior limiting lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001246] - * posterior limiting lamina of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58309] - * posterior limiting lamina of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58309] + * Descemet's posterior elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58309 ] + * lamina limitans posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58309 ] + * posterior limiting lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001246 ] + * posterior limiting lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001246 ] + * posterior limiting lamina of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58309 ] + * posterior limiting lamina of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58309 ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A09.371.060.217.271 * SCTID:281076002 * TAO:0002157 - * UMLS:C0011665 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Descemet_s_Membrane] + * UMLS:C0011665 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Descemet_s_Membrane ] * ZFA:0001686 * ncithesaurus:Descemet_s_Membrane @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is the innermost layer of the cornea and consists of a monolayer of ploygonal cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004467.md b/md/UBERON/67/UBERON_0004467.md index 53aaaefa1d..9192c83416 100644 --- a/md/UBERON/67/UBERON_0004467.md +++ b/md/UBERON/67/UBERON_0004467.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004467 * *Label* = musculature of pharynx - * *Definition* = Any collection of muscles that is part of a pharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = See comments for 'pharyngeal muscle' ## Synonyms - * pharyngeal musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001307] - * set of muscles of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:264609] + * pharyngeal musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001307 ] + * set of muscles of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:264609 ] ## Cross-references @@ -24,7 +24,7 @@ ## Superclasses * [musculature](../../UBERON/15/UBERON_0001015.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) ## Equivalencies @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004667.md b/md/UBERON/67/UBERON_0004667.md index 21f04240db..e713023ef3 100644 --- a/md/UBERON/67/UBERON_0004667.md +++ b/md/UBERON/67/UBERON_0004667.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004667 * *Label* = interventricular septum muscular part - * *Definition* = The muscular portion of the wall between the two lower chambers of the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Interventricular_septum#Portions] + * *Definition* = The muscular portion of the wall between the two lower chambers of the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Interventricular_septum#Portions ] ## Synonyms - * cardiac ventricular muscular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * muscular interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7134] + * cardiac ventricular muscular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * muscular interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7134 ] * muscular part interventricular septum - * muscular part of interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7134] - * pars muscularis (septi interventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7134] - * septum membranaceum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscular part of interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7134 ] + * pars muscularis (septi interventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7134 ] + * septum membranaceum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ventricular muscular septum - * muscular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003150] - * muscular interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002940] + * muscular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003150 ] + * muscular interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002940 ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle tissue](../../UBERON/85/UBERON_0002385.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interventricular septum](../../UBERON/94/UBERON_0002094.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscular septum is the lower part of the ventricular septum[GO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004144 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004767.md b/md/UBERON/67/UBERON_0004767.md index 8e02994171..bbd4dc7f66 100644 --- a/md/UBERON/67/UBERON_0004767.md +++ b/md/UBERON/67/UBERON_0004767.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004767 * *Label* = vomerine tooth - * *Definition* = A tooth that is on the vomer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclo.co.uk/define/Vomerine%20teeth] + * *Definition* = A tooth that is on the vomer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclo.co.uk/define/Vomerine%20teeth ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [vomer](../../UBERON/96/UBERON_0002396.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tooth that is attached to the vomer.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: OBO_REL:part_of vomer (TAO:0000308) CHANGED TO: attaches_to vomer (UBERON:0002396)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0004867.md b/md/UBERON/67/UBERON_0004867.md index 2be3f1f68e..d59fd743aa 100644 --- a/md/UBERON/67/UBERON_0004867.md +++ b/md/UBERON/67/UBERON_0004867.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004867 * *Label* = orbital cavity - * *Definition* = An anatomical cavity that is part of a orbital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a orbital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: note that the AAO class is a cavity ## Synonyms - * orbit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000343] + * orbit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000343 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005067.md b/md/UBERON/67/UBERON_0005067.md index e0ea17e2d6..87714fe203 100644 --- a/md/UBERON/67/UBERON_0005067.md +++ b/md/UBERON/67/UBERON_0005067.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005067 * *Label* = amphid sensory organ - * *Definition* = Amphid sensory organs are the sensory organs of nematodes[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003386] + * *Definition* = Amphid sensory organs are the sensory organs of nematodes[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003386 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005167.md b/md/UBERON/67/UBERON_0005167.md index a0d7ad0a56..a9c9565a91 100644 --- a/md/UBERON/67/UBERON_0005167.md +++ b/md/UBERON/67/UBERON_0005167.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005167 * *Label* = papillary duct - * *Definition* = The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Encyclopedia:http://encyclopedia.thefreedictionary.com/] + * *Definition* = The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Encyclopedia:http://encyclopedia.thefreedictionary.com/ ] ## Synonyms * papillary duct * papillary duct of kidney * renal papillary duct - * Bellini's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011331] + * Bellini's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011331 ] * duct of Bellini ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005267.md b/md/UBERON/67/UBERON_0005267.md index db74ae0b1f..6508191fcd 100644 --- a/md/UBERON/67/UBERON_0005267.md +++ b/md/UBERON/67/UBERON_0005267.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005267 * *Label* = renal cortex collecting duct - * *Definition* = A collecting duct of renal tubule that is part of a cortex of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collecting duct of renal tubule that is part of a cortex of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney cortex collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002600] + * kidney cortex collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002600 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005367.md b/md/UBERON/67/UBERON_0005367.md index 9fdfe571cd..f439755f2f 100644 --- a/md/UBERON/67/UBERON_0005367.md +++ b/md/UBERON/67/UBERON_0005367.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005467.md b/md/UBERON/67/UBERON_0005467.md index 674c0efd27..b1b1e0244e 100644 --- a/md/UBERON/67/UBERON_0005467.md +++ b/md/UBERON/67/UBERON_0005467.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005467 * *Label* = platysma - * *Definition* = The platysma is a superficial muscle that overlaps the sternocleidomastoid. It is a broad sheet arising from the fascia covering the upper parts of the pectoralis major and deltoid; its fibers cross the clavicle, and proceed obliquely upward and medially along the side of the neck. The anterior fibers interlace, below and behind the symphysis menti, with the fibers of the muscle of the opposite side; the posterior fibers cross the mandible, some being inserted into the bone below the oblique line, others into the skin and subcutaneous tissue of the lower part of the face. Many of these fibers blend with the muscles about the angle and lower part of the mouth. Sometimes fibers can be traced to the zygomaticus, or to the margin of the orbicularis oculi. Beneath the platysma, the external jugular vein descends from the angle of the mandible to the clavicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Platysma_muscle] + * *Definition* = The platysma is a superficial muscle that overlaps the sternocleidomastoid. It is a broad sheet arising from the fascia covering the upper parts of the pectoralis major and deltoid; its fibers cross the clavicle, and proceed obliquely upward and medially along the side of the neck. The anterior fibers interlace, below and behind the symphysis menti, with the fibers of the muscle of the opposite side; the posterior fibers cross the mandible, some being inserted into the bone below the oblique line, others into the skin and subcutaneous tissue of the lower part of the face. Many of these fibers blend with the muscles about the angle and lower part of the mouth. Sometimes fibers can be traced to the zygomaticus, or to the margin of the orbicularis oculi. Beneath the platysma, the external jugular vein descends from the angle of the mandible to the clavicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Platysma_muscle ] * *Comment* = Human variation notes: Variations occur in the extension over the face and over the clavicle and shoulder; it may be absent or interdigitate with the muscle of the opposite side in front of the neck; attachment to clavicle, mastoid process or occipital bone occurs. A more or less independent fasciculus, the occipitalis minor, may extend from the fascia over the trapezius to fascia over the insertion of the sternocleidomastoideus. ## Synonyms - * platysma muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005124] - * platysma cervicale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19531159[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * platysma myoides [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19531159[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * neck platysma muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005124] + * platysma muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005124 ] + * platysma cervicale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19531159, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * platysma myoides [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19531159, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * neck platysma muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005124 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:18190 * FMA:45738 * SCTID:244754004 - * UMLS:C1514163 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Platysma_Myoides] + * UMLS:C1514163 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Platysma_Myoides ] * VHOG:0000931 * Wikipedia:Platysma_muscle * http://upload.wikimedia.org/wikipedia/commons/f/fb/Platysma.png @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The platysma is a pharyngeal arch 2 muscle and a superficial facial muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical branch of the facial nerve, and attaches to the skin.[FEED] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = One of these (facial muscles in mammals), the platysma, is an unspecialized muscle derived from the hyoid arch.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005567.md b/md/UBERON/67/UBERON_0005567.md index 675c550bd2..89cfbafc65 100644 --- a/md/UBERON/67/UBERON_0005567.md +++ b/md/UBERON/67/UBERON_0005567.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005567 * *Label* = rhombomere 1 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000781] + * lateral wall rhombomere 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000781 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 1](../../UBERON/99/UBERON_0005499.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005667.md b/md/UBERON/67/UBERON_0005667.md index d53a11eca5..734f875494 100644 --- a/md/UBERON/67/UBERON_0005667.md +++ b/md/UBERON/67/UBERON_0005667.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005867.md b/md/UBERON/67/UBERON_0005867.md index ab342645ae..aa805892f4 100644 --- a/md/UBERON/67/UBERON_0005867.md +++ b/md/UBERON/67/UBERON_0005867.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005867 * *Label* = mandibular prominence - * *Definition* = The mandibular prominence is an embryological structure which gives rise to the lower portion of the face. The mandible and lower lip derive from it. It is innervated by the mandibular nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_prominence] + * *Definition* = The mandibular prominence is an embryological structure which gives rise to the lower portion of the face. The mandible and lower lip derive from it. It is innervated by the mandibular nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_prominence ] * *Comment* = Editor note: check develops_from ## Synonyms - * mandibular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_prominence] - * mandibular swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * prominentia mandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_prominence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mandibular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_prominence ] + * mandibular swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * prominentia mandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_prominence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EHDAA2:0001061 * EHDAA:5871 * EMAPA:17355 - * UMLS:C1512982 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mandibular_Prominence] + * UMLS:C1512982 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mandibular_Prominence ] * Wikipedia:Mandibular_prominence * ncithesaurus:Mandibular_Prominence @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0005967.md b/md/UBERON/67/UBERON_0005967.md index 31e94e2de0..d8c9cb339a 100644 --- a/md/UBERON/67/UBERON_0005967.md +++ b/md/UBERON/67/UBERON_0005967.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005967 * *Label* = conotruncal ridge - * *Definition* = One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:8823298] + * *Definition* = One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:8823298 ] ## Synonyms - * aortico-pulmonary spiral ridges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * bulbar ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * conotruncal cushion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * endocardial ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * outflow tract cushion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * outflow tract endocardial cushion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010585] - * spiral ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001385] + * aortico-pulmonary spiral ridges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * bulbar ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * conotruncal cushion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * endocardial ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * outflow tract cushion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * outflow tract endocardial cushion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010585 ] + * spiral ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001385 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006067.md b/md/UBERON/67/UBERON_0006067.md index 30cba6e91d..e679847511 100644 --- a/md/UBERON/67/UBERON_0006067.md +++ b/md/UBERON/67/UBERON_0006067.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006067 * *Label* = musculature of hindlimb zeugopod - * *Definition* = Any collection of muscles that is part of a hindlimb zeugopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a hindlimb zeugopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * leg musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50211] - * muscle group of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50211] - * set of muscles of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50211] + * leg musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50211 ] + * muscle group of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50211 ] + * set of muscles of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50211 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006167.md b/md/UBERON/67/UBERON_0006167.md index c4e074ada0..f67af570a3 100644 --- a/md/UBERON/67/UBERON_0006167.md +++ b/md/UBERON/67/UBERON_0006167.md @@ -6,7 +6,7 @@ ## Synonyms - * wing proper dorsal digital arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing proper dorsal digital arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006267.md b/md/UBERON/67/UBERON_0006267.md index 7a9f934b79..70f56388ac 100644 --- a/md/UBERON/67/UBERON_0006267.md +++ b/md/UBERON/67/UBERON_0006267.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006267 * *Label* = notochordal plate - * *Definition* = The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001212] + * *Definition* = The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001212 ] * *Comment* = TODO - check ordering; awaiting confirmation from JB ## Synonyms @@ -14,7 +14,7 @@ * EHDAA2:0001278 * EHDAA:264 * EMAPA:16101 - * UMLS:C1518429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Notochordal_Plate] + * UMLS:C1518429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Notochordal_Plate ] * VHOG:0001212 * ncithesaurus:Notochordal_Plate @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord. [Carson_JL, Dehart_DB, Developmental_Dynamics_(1994)_201:_260-278, Gesteland_K_and_Schoenwolf_GC, Inagaki_T, Morphogenesis_of_the_murine_node_and_notochordal_plate, The_prechordal_plate, Vrablic_T, see_Mueller_F_and_O'Rahilly_R, the_rostral_end_of_the_notochord_and_nearby_median_features_in_staged_human_embryos._Cells_Tissues_Organs_(2003)_173:_1-20_and_Sulik_K][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006467.md b/md/UBERON/67/UBERON_0006467.md index 16b8fd9828..7f20ea238a 100644 --- a/md/UBERON/67/UBERON_0006467.md +++ b/md/UBERON/67/UBERON_0006467.md @@ -6,16 +6,16 @@ ## Synonyms - * T11 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1596] - * eleventh thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1596] - * t11 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71177] + * T11 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1596 ] + * eleventh thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1596 ] + * t11 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71177 ] ## Cross-references * FMA:71177 * NIF_GrossAnatomy:birnlex_1596 * SCTID:278773001 - * UMLS:C0457869 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1596] + * UMLS:C0457869 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1596 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006567.md b/md/UBERON/67/UBERON_0006567.md index c0b2675937..6724a408e3 100644 --- a/md/UBERON/67/UBERON_0006567.md +++ b/md/UBERON/67/UBERON_0006567.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006567 * *Label* = right ventricle myocardium - * *Definition* = Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9535[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9535, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms - * Right ventricular myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9535] - * myocardium of right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9535] + * Right ventricular myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9535 ] + * myocardium of right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9535 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium of ventricle](../../UBERON/83/UBERON_0001083.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006667.md b/md/UBERON/67/UBERON_0006667.md index 5f144401d7..e2f3fac7f9 100644 --- a/md/UBERON/67/UBERON_0006667.md +++ b/md/UBERON/67/UBERON_0006667.md @@ -6,9 +6,9 @@ ## Synonyms - * hypophyseal fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54721] - * hypophysial fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54721] - * pituitary fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54721] + * hypophyseal fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54721 ] + * hypophysial fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54721 ] + * pituitary fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54721 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006767.md b/md/UBERON/67/UBERON_0006767.md index 3169a93752..604568d1d4 100644 --- a/md/UBERON/67/UBERON_0006767.md +++ b/md/UBERON/67/UBERON_0006767.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006767 * *Label* = head of femur - * *Definition* = The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.232.500.247.343[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_head] + * *Definition* = The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.232.500.247.343, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_head ] ## Synonyms - * acetabular head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000892] - * femoral head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32851] - * capital femoral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis] - * caput femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000892[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_head] - * caput femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur_head[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * femur head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.232.500.247.343] + * acetabular head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000892 ] + * femoral head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32851 ] + * capital femoral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis ] + * caput femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000892, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_head ] + * caput femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur_head, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * femur head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.232.500.247.343 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:32851 * MESH:A02.835.232.500.247.343 * SCTID:361791000 - * UMLS:C0015813 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Femur] + * UMLS:C0015813 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Femur ] * Wikipedia:Femur_head * galen:FemoralHead * http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Proximal head of the femur, which articulates with the acetabulum.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006867.md b/md/UBERON/67/UBERON_0006867.md index 06aa6132bd..bf716fd1d5 100644 --- a/md/UBERON/67/UBERON_0006867.md +++ b/md/UBERON/67/UBERON_0006867.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006867 * *Label* = anal part of perineum - * *Definition* = The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_triangle] + * *Definition* = The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_triangle ] ## Synonyms - * anal triangle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20347] - * anal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20347] - * regio analis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_triangle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anal triangle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20347 ] + * anal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20347 ] + * regio analis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_triangle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0006967.md b/md/UBERON/67/UBERON_0006967.md index a5393a45c7..c7cbe56439 100644 --- a/md/UBERON/67/UBERON_0006967.md +++ b/md/UBERON/67/UBERON_0006967.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006967 * *Label* = horn - * *Definition* = a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Horn_(anatomy)] + * *Definition* = a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Horn_(anatomy) ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0007167.md b/md/UBERON/67/UBERON_0007167.md index 8139b55ce2..e4b0cfe0ac 100644 --- a/md/UBERON/67/UBERON_0007167.md +++ b/md/UBERON/67/UBERON_0007167.md @@ -6,7 +6,7 @@ ## Synonyms - * right dome of diaphragm viewed radiologically [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13333] + * right dome of diaphragm viewed radiologically [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13333 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0007267.md b/md/UBERON/67/UBERON_0007267.md index eb8bc65643..3387c5da2a 100644 --- a/md/UBERON/67/UBERON_0007267.md +++ b/md/UBERON/67/UBERON_0007267.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007267 * *Label* = trachea pre-cartilage rings - * *Definition* = A pre-cartilage condensation that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0007367.md b/md/UBERON/67/UBERON_0007367.md index 3285b3773b..cc8a919dc0 100644 --- a/md/UBERON/67/UBERON_0007367.md +++ b/md/UBERON/67/UBERON_0007367.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007367 * *Label* = surface of tongue - * *Definition* = An anatomical surface that is part of a tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical surface that is part of a tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tongue surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54647] + * tongue surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54647 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical surface](../../UBERON/84/UBERON_0006984.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0007567.md b/md/UBERON/67/UBERON_0007567.md index c6ef926997..6f179450ca 100644 --- a/md/UBERON/67/UBERON_0007567.md +++ b/md/UBERON/67/UBERON_0007567.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007567 * *Label* = regenerating anatomical structure - * *Definition* = An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] * *Comment* = Editor notes: we define this in terms of active participation in regeneration, rather that capabilities. In this sense it is different from the AEO structure. ## Synonyms - * regenerating tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005147] + * regenerating tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005147 ] * regenerative tissue ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [participates in](../../BFO/56/BFO_0000056.md) some [regeneration](../../GO/99/GO_0031099.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A portion of tissue that is regrowing after damage or amputation.[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003233 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0007767.md b/md/UBERON/67/UBERON_0007767.md index 8dd76ae20f..64bc3d0157 100644 --- a/md/UBERON/67/UBERON_0007767.md +++ b/md/UBERON/67/UBERON_0007767.md @@ -6,7 +6,7 @@ ## Synonyms - * premammillary nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PMd] + * premammillary nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PMd ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0008267.md b/md/UBERON/67/UBERON_0008267.md index 877edb752c..781063d9b7 100644 --- a/md/UBERON/67/UBERON_0008267.md +++ b/md/UBERON/67/UBERON_0008267.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008267 * *Label* = left supracardinal vein - * *Definition* = The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0443065837] + * *Definition* = The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0443065837 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0008367.md b/md/UBERON/67/UBERON_0008367.md index 67c2a97c2e..a8ace0e944 100644 --- a/md/UBERON/67/UBERON_0008367.md +++ b/md/UBERON/67/UBERON_0008367.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008367 * *Label* = breast epithelium - * *Definition* = An epithelium that is part of a breast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a breast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [breast](../../UBERON/10/UBERON_0000310.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0008867.md b/md/UBERON/67/UBERON_0008867.md index a39f11e085..6f3710d1ef 100644 --- a/md/UBERON/67/UBERON_0008867.md +++ b/md/UBERON/67/UBERON_0008867.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008867 * *Label* = trabecular network of bone - * *Definition* = the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010867] + * *Definition* = the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010867 ] * *Comment* = Editor note: consider revision - we have 3 classes, the tissue itself, the network, and the spaces. ## Synonyms - * bone trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010867] - * bone trabeculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010867] + * bone trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010867 ] + * bone trabeculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010867 ] ## Cross-references * MP:0010867 - * UMLS:C2826619 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_Trabeculae] + * UMLS:C2826619 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_Trabeculae ] * ncithesaurus:Bone_Trabeculae ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0008967.md b/md/UBERON/67/UBERON_0008967.md index 109b45bedc..735c4caad1 100644 --- a/md/UBERON/67/UBERON_0008967.md +++ b/md/UBERON/67/UBERON_0008967.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008967 * *Label* = centrum semiovale - * *Definition* = The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semioval_center] + * *Definition* = The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semioval_center ] * *Comment* = note that WP suggests a merge with cerebral white matter ## Synonyms - * medullary center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61939] - * white matter of cerebrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61939] - * centrum semiovale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semioval_center[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semioval center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000229] + * medullary center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61939 ] + * white matter of cerebrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61939 ] + * centrum semiovale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semioval_center, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semioval center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000229 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0009067.md b/md/UBERON/67/UBERON_0009067.md index 13afc52d8b..ccef800512 100644 --- a/md/UBERON/67/UBERON_0009067.md +++ b/md/UBERON/67/UBERON_0009067.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0009567.md b/md/UBERON/67/UBERON_0009567.md index 5baaabdd1b..13a64ad08d 100644 --- a/md/UBERON/67/UBERON_0009567.md +++ b/md/UBERON/67/UBERON_0009567.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009567 * *Label* = nail of pedal digit - * *Definition* = A nail that is part of a pedal digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nail of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54328] - * toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54328] - * toenail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54328] - * nail plate of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54328] + * nail of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54328 ] + * toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54328 ] + * toenail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54328 ] + * nail plate of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54328 ] ## Cross-references * FMA:54328 * SCTID:244198006 - * UMLS:C0222007 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Toe_Nail] + * UMLS:C0222007 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Toe_Nail ] * ncithesaurus:Toe_Nail ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0009767.md b/md/UBERON/67/UBERON_0009767.md index 0dd5fe7fbe..6a6a48910d 100644 --- a/md/UBERON/67/UBERON_0009767.md +++ b/md/UBERON/67/UBERON_0009767.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009767 * *Label* = proximal interphalangeal joint - * *Definition* = An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An inter-phalangeal joint that connects a proximal phalanx to either a medial or distal phalanx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * PIJ joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * PIP joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] + * PIJ joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * PIP joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [proximal phalanx](../../UBERON/02/UBERON_0004302.md) and [interphalangeal joint](../../UBERON/58/UBERON_0006658.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0009867.md b/md/UBERON/67/UBERON_0009867.md index 48f37569e4..db686a0542 100644 --- a/md/UBERON/67/UBERON_0009867.md +++ b/md/UBERON/67/UBERON_0009867.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0009967.md b/md/UBERON/67/UBERON_0009967.md index 53430ebbfb..f3a0abcd2e 100644 --- a/md/UBERON/67/UBERON_0009967.md +++ b/md/UBERON/67/UBERON_0009967.md @@ -7,16 +7,16 @@ ## Synonyms - * sinus lienalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sinus splenicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * splenic sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62815] - * venous sinus of red pulp of spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62815] + * sinus lienalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sinus splenicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * splenic sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62815 ] + * venous sinus of red pulp of spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62815 ] ## Cross-references * FMA:62815 * MA:0000761 - * UMLS:C1179415 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Sinus] + * UMLS:C1179415 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Sinus ] * ncithesaurus:Splenic_Sinus ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0010167.md b/md/UBERON/67/UBERON_0010167.md index c75b1ed58c..a5c1adaa3a 100644 --- a/md/UBERON/67/UBERON_0010167.md +++ b/md/UBERON/67/UBERON_0010167.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010167 * *Label* = beard - * *Definition* = the collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Beard] + * *Definition* = the collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Beard ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0010267.md b/md/UBERON/67/UBERON_0010267.md index cfbb731079..28e8b8199f 100644 --- a/md/UBERON/67/UBERON_0010267.md +++ b/md/UBERON/67/UBERON_0010267.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010267 * *Label* = obsolete inferior reticular formation - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021728] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021728 ] ## Synonyms @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010267 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_0010367.md b/md/UBERON/67/UBERON_0010367.md index 431c2b4d70..f292c240cb 100644 --- a/md/UBERON/67/UBERON_0010367.md +++ b/md/UBERON/67/UBERON_0010367.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010367 * *Label* = conjunctival vein - * *Definition* = A vein that is part of a conjunctiva. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a conjunctiva. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [conjunctiva](../../UBERON/11/UBERON_0001811.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0010467.md b/md/UBERON/67/UBERON_0010467.md index e617f4e079..8266a2d42f 100644 --- a/md/UBERON/67/UBERON_0010467.md +++ b/md/UBERON/67/UBERON_0010467.md @@ -11,7 +11,7 @@ ## Cross-references * SCTID:277440006 - * UMLS:C1515272 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Teres_Muscle] + * UMLS:C1515272 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Teres_Muscle ] * ncithesaurus:Teres_Muscle ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0010567.md b/md/UBERON/67/UBERON_0010567.md index fb526a3422..5641bb54c1 100644 --- a/md/UBERON/67/UBERON_0010567.md +++ b/md/UBERON/67/UBERON_0010567.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010567 * *Label* = manual digit 3 metacarpus pre-cartilage condensation - * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 3 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000527] - * fore limb digit 3 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 3 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000527 ] + * fore limb digit 3 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal 3 pre-cartilage condensation - * hand digit 3 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 3 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3 mesenchyme](../../UBERON/93/UBERON_0005693.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0010867.md b/md/UBERON/67/UBERON_0010867.md index c91b43a841..262c06c287 100644 --- a/md/UBERON/67/UBERON_0010867.md +++ b/md/UBERON/67/UBERON_0010867.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010867 * *Label* = plagiopatagium - * *Definition* = a flight membrane running between the body and the limb or digits.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryP.html] + * *Definition* = a flight membrane running between the body and the limb or digits.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryP.html ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) and [connected to](../../UBREL/01/UBREL_0000001.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) and [dactylopatagium](../../UBERON/62/UBERON_0010862.md) and [part_of](../../BFO/50/BFO_0000050.md) some [patagium](../../UBERON/56/UBERON_0010856.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011167.md b/md/UBERON/67/UBERON_0011167.md index 8563b407c2..1545aed77a 100644 --- a/md/UBERON/67/UBERON_0011167.md +++ b/md/UBERON/67/UBERON_0011167.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011167 * *Label* = septomaxilla bone - * *Definition* = Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] + * *Definition* = Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] * *Comment* = A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity ## Synonyms - * septomaxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * internasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * intranasal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * lacrimale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * le cornet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * nariale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * nasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * os internasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * os nariale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * septomaxillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] - * turbinale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000556] + * septomaxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * internasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * intranasal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * lacrimale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * le cornet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * nariale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * nasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * os internasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * os nariale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * septomaxillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] + * turbinale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000556 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011267.md b/md/UBERON/67/UBERON_0011267.md index f99c7f66fc..96a33ac08b 100644 --- a/md/UBERON/67/UBERON_0011267.md +++ b/md/UBERON/67/UBERON_0011267.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011267 * *Label* = quadratojugal bone - * *Definition* = The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadratojugal_bone] + * *Definition* = The quadratojugal is a small jaw bone that is present in most amphibians, reptiles, and birds, but has been lost in mammals. It is connected to the jugal as well as other bones, though these may vary with species. The quadratojugal bone is a small bone between the cheek and otic notch (Lecointre 380). Squamates (lizards and snakes) lack a quadratojugal bone (Schwenk 193). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadratojugal_bone ] ## Synonyms - * quadratojugal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] - * quadratjochbeine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] - * quadrato-jugals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] - * quadrato-maxillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] - * quadratojugale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] - * tympano maleaux [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000532] + * quadratojugal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] + * quadratjochbeine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] + * quadrato-jugals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] + * quadrato-maxillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] + * quadratojugale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] + * tympano maleaux [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000532 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired intramembranous bones that completes the maxillary arch posteriorly; they appear at the end of, or just after, metamorphosis[AAO:0000532]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011667.md b/md/UBERON/67/UBERON_0011667.md index 296d8a2e18..99e6dd498d 100644 --- a/md/UBERON/67/UBERON_0011667.md +++ b/md/UBERON/67/UBERON_0011667.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011667 * *Label* = pleural plate of carapace - * *Definition* = One of eight pairs of plates on the carapace, forming two rows adjacent to the peripheral plates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = One of eight pairs of plates on the carapace, forming two rows adjacent to the peripheral plates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = A combination of ribs and fused dermal bone[WP] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011767.md b/md/UBERON/67/UBERON_0011767.md index 94bdb31a8d..55c2f08c22 100644 --- a/md/UBERON/67/UBERON_0011767.md +++ b/md/UBERON/67/UBERON_0011767.md @@ -6,8 +6,8 @@ ## Synonyms - * right recurrent laryngeal branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17275] - * right recurrent laryngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14468] + * right recurrent laryngeal branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17275 ] + * right recurrent laryngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14468 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011867.md b/md/UBERON/67/UBERON_0011867.md index eee25b181e..2cf4d0b767 100644 --- a/md/UBERON/67/UBERON_0011867.md +++ b/md/UBERON/67/UBERON_0011867.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011867 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0011967.md b/md/UBERON/67/UBERON_0011967.md index 04d0d6c8f3..4ca018dba4 100644 --- a/md/UBERON/67/UBERON_0011967.md +++ b/md/UBERON/67/UBERON_0011967.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011967 * *Label* = costotransverse joint - * *Definition* = The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costotransverse_joint] + * *Definition* = The facet of the tubercle of the rib forms an articulation with the adjacent transverse process of a thoracic vertebra. This is a plane type synovial joint called the costotransverse joint. This articulation is present in all but the eleventh and twelfth ribs. Ribs 1 to 10 have two joints in close proximity posteriorly; the costovertebral joints and the costotranseverse joints. This arrangement restrains the motion of the ribs allowing them to work in a parallel fashion during breathing. If a typical rib had only one joint posteriorly the resultant swivel action would allow a rib to be non-parallel with respect to the neighboring ribs making for a very inefficient respiratory mechanism. The ventral rami innervate the costotransverse joints. Therefore, therapeutic medial branch blocks are ineffectual. The ligaments of the joint are: Articular capsule Posterior costotransverse Anterior costotransverse Ligament of the neck of the rib Ligament of the tubercle of the rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costotransverse_joint ] ## Synonyms - * costotransverse articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costotransverse_joint] + * costotransverse articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costotransverse_joint ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011967 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0012067.md b/md/UBERON/67/UBERON_0012067.md index 0f73390d99..52cc182315 100644 --- a/md/UBERON/67/UBERON_0012067.md +++ b/md/UBERON/67/UBERON_0012067.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012067 * *Label* = primary bronchiole - * *Definition* = A bronchiole that arises from a segmental bronchus and does not contain cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchiole#Primary_bronchioles] + * *Definition* = A bronchiole that arises from a segmental bronchus and does not contain cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchiole#Primary_bronchioles ] ## Synonyms - * proximal bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62510] + * proximal bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62510 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0012167.md b/md/UBERON/67/UBERON_0012167.md index 9d4bf25cb8..43feb1e26e 100644 --- a/md/UBERON/67/UBERON_0012167.md +++ b/md/UBERON/67/UBERON_0012167.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012167 * *Label* = buccal fat pad - * *Definition* = The Buccal fat pad is one of several encapsulated fat masses in the cheek. It is a deep fat pad located on either side of the face between the buccinator muscle and several more superficial muscles. It should not be confused with the malar fat pad, which is directly below the skin of the cheek. It should also not be confused with jowl fat pads. It is implicated in the formation of hollow cheeks and the nasolabial fold, but not in the formation of jowls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccal_fat_pad] + * *Definition* = The Buccal fat pad is one of several encapsulated fat masses in the cheek. It is a deep fat pad located on either side of the face between the buccinator muscle and several more superficial muscles. It should not be confused with the malar fat pad, which is directly below the skin of the cheek. It should also not be confused with jowl fat pads. It is implicated in the formation of hollow cheeks and the nasolabial fold, but not in the formation of jowls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccal_fat_pad ] ## Synonyms - * Bichat's fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59799] + * Bichat's fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59799 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cheek](../../UBERON/67/UBERON_0001567.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0012267.md b/md/UBERON/67/UBERON_0012267.md index 8133e1e8c6..0d9b5fcf6f 100644 --- a/md/UBERON/67/UBERON_0012267.md +++ b/md/UBERON/67/UBERON_0012267.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012267 * *Label* = equine splint bone - * *Definition* = The splint bones sit either side of the equine cannon bone. Homologous to metapodium bones 2 or 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The splint bones sit either side of the equine cannon bone. Homologous to metapodium bones 2 or 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In future this class may be replaced by a more taxon-neutral class grouping metapodial bones 2 or 4 ## Synonyms - * splint bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788] + * splint bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788 ] * metapodial bone 2 or 4 ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012267 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0012367.md b/md/UBERON/67/UBERON_0012367.md index e7cae2bf8e..3d2e89cafc 100644 --- a/md/UBERON/67/UBERON_0012367.md +++ b/md/UBERON/67/UBERON_0012367.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012367 * *Label* = muscle layer of intestine - * *Definition* = A muscle layer that is part of an intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of an intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * intestinal muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15697] - * muscularis externa of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15697] + * intestinal muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15697 ] + * muscularis externa of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15697 ] * smooth muscle of intestine ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012367 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0012467.md b/md/UBERON/67/UBERON_0012467.md index db31246dc2..cf314af02c 100644 --- a/md/UBERON/67/UBERON_0012467.md +++ b/md/UBERON/67/UBERON_0012467.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012467 * *Label* = enclosed anatomical space - * *Definition* = An anatomical space with no opening to another space or to the exterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000222] + * *Definition* = An anatomical space with no opening to another space or to the exterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000222 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [has_quality](../../SIO/08/SIO_000008.md) some [closed](../../PATO/08/PATO_0000608.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012467 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0013067.md b/md/UBERON/67/UBERON_0013067.md index 0a11c90770..e0da6cf989 100644 --- a/md/UBERON/67/UBERON_0013067.md +++ b/md/UBERON/67/UBERON_0013067.md @@ -20,15 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colorectum](../../UBERON/52/UBERON_0012652.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0013167.md b/md/UBERON/67/UBERON_0013167.md index 13252e32ab..0c9bc923dc 100644 --- a/md/UBERON/67/UBERON_0013167.md +++ b/md/UBERON/67/UBERON_0013167.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013167 * *Label* = cricopharyngeal ligament - * *Definition* = Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricopharyngeal_ligament] + * *Definition* = Laryngeal ligament that connects the cricoid cartilage to the pharynx[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricopharyngeal_ligament ] ## Synonyms * crico-pharyngeal ligament - * ligamentum cricopharyngeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricopharyngeal_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum cricopharyngeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricopharyngeal_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) and [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013167 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0013767.md b/md/UBERON/67/UBERON_0013767.md index 7a18b1ab6e..ec5d2b3e57 100644 --- a/md/UBERON/67/UBERON_0013767.md +++ b/md/UBERON/67/UBERON_0013767.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013767 * *Label* = frontal process of maxilla - * *Definition* = The frontal process of the maxilla (nasal process) is a strong plate, which projects upward, medialward, and backward, by the side of the nose, forming part of its lateral boundary. Its lateral surface is smooth, continuous with the anterior surface of the body, and gives attachment to the Quadratus labii superioris, the Orbicularis oculi, and the medial palpebral ligament. Its medial surface forms part of the lateral wall of the nasal cavity; at its upper part is a rough, uneven area, which articulates with the ethmoid, closing in the anterior ethmoidal cells; below this is an oblique ridge, the ethmoidal crest, the posterior end of which articulates with the middle nasal concha, while the anterior part is termed the agger nasi; the crest forms the upper limit of the atrium of the middle meatus. The upper border articulates with the frontal bone and the anterior with the nasal; the posterior border is thick, and hollowed into a groove, which is continuous below with the lacrimal groove on the nasal surface of the body: by the articulation of the medial margin of the groove with the anterior border of the lacrimal a corresponding groove on the lacrimal is brought into continuity, and together they form the lacrimal fossa for the lodgement of the lacrimal sac. The lateral margin of the groove is named the anterior lacrimal crest, and is continuous below with the orbital margin; at its junction with the orbital surface is a small tubercle, the lacrimal tubercle, which serves as a guide to the position of the lacrimal sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_process_of_maxilla] + * *Definition* = The frontal process of the maxilla (nasal process) is a strong plate, which projects upward, medialward, and backward, by the side of the nose, forming part of its lateral boundary. Its lateral surface is smooth, continuous with the anterior surface of the body, and gives attachment to the Quadratus labii superioris, the Orbicularis oculi, and the medial palpebral ligament. Its medial surface forms part of the lateral wall of the nasal cavity; at its upper part is a rough, uneven area, which articulates with the ethmoid, closing in the anterior ethmoidal cells; below this is an oblique ridge, the ethmoidal crest, the posterior end of which articulates with the middle nasal concha, while the anterior part is termed the agger nasi; the crest forms the upper limit of the atrium of the middle meatus. The upper border articulates with the frontal bone and the anterior with the nasal; the posterior border is thick, and hollowed into a groove, which is continuous below with the lacrimal groove on the nasal surface of the body: by the articulation of the medial margin of the groove with the anterior border of the lacrimal a corresponding groove on the lacrimal is brought into continuity, and together they form the lacrimal fossa for the lodgement of the lacrimal sac. The lateral margin of the groove is named the anterior lacrimal crest, and is continuous below with the orbital margin; at its junction with the orbital surface is a small tubercle, the lacrimal tubercle, which serves as a guide to the position of the lacrimal sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_process_of_maxilla ] ## Synonyms - * processus frontalis (maxilla) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52894] - * frontal process of the maxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_process_of_maxilla] - * processus frontalis maxillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_process_of_maxilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus frontalis (maxilla) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52894 ] + * frontal process of the maxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_process_of_maxilla ] + * processus frontalis maxillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_process_of_maxilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0014567.md b/md/UBERON/67/UBERON_0014567.md index 9036ed88be..d510b86b0c 100644 --- a/md/UBERON/67/UBERON_0014567.md +++ b/md/UBERON/67/UBERON_0014567.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014567 * *Label* = layer of hippocampal field - * *Definition* = A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A subdivision of a layer of the hippocampus (e.g. stratum moleculare) covering all or port of a hippocampal field (e.g. CA1). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014567 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0014667.md b/md/UBERON/67/UBERON_0014667.md index 5bce65a7e7..ef1d51a951 100644 --- a/md/UBERON/67/UBERON_0014667.md +++ b/md/UBERON/67/UBERON_0014667.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014667 * *Label* = periventricular nucleus of hypothalamus - * *Definition* = A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003795] + * *Definition* = A small nucleus at the base of the hypothalamus, adjacent to the arcuate nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003795 ] ## Synonyms - * periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003795] - * periventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PE] + * periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003795 ] + * periventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PE ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014667 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0014767.md b/md/UBERON/67/UBERON_0014767.md index 8763b86684..08f0632ed8 100644 --- a/md/UBERON/67/UBERON_0014767.md +++ b/md/UBERON/67/UBERON_0014767.md @@ -6,8 +6,8 @@ ## Synonyms - * left crus of diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58287] - * left crus of lumbar part of diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58287] + * left crus of diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58287 ] + * left crus of lumbar part of diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58287 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crus of diaphragm](../../UBERON/65/UBERON_0014765.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014767 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_0015067.md b/md/UBERON/67/UBERON_0015067.md index bb35b25e60..dbd23f511f 100644 --- a/md/UBERON/67/UBERON_0015067.md +++ b/md/UBERON/67/UBERON_0015067.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0015067 * *Label* = centrale endochondral element - * *Definition* = Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:AMAO] + * *Definition* = Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:AMAO ] * *Comment* = Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. ## Synonyms - * central mesopodium element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0012131] - * centralia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0012131[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * central mesopodium element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0012131 ] + * centralia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0012131, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015067 + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2000167.md b/md/UBERON/67/UBERON_2000167.md index 7daa69980d..5215fa82c7 100644 --- a/md/UBERON/67/UBERON_2000167.md +++ b/md/UBERON/67/UBERON_2000167.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000167 * *Label* = obsolete anal fin skeleton - * *Definition* = Median fin skeleton that is located posterior to the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Median fin skeleton that is located posterior to the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4000166 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_2000267.md b/md/UBERON/67/UBERON_2000267.md index cac67de761..74f491c8d5 100644 --- a/md/UBERON/67/UBERON_2000267.md +++ b/md/UBERON/67/UBERON_2000267.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2000767.md b/md/UBERON/67/UBERON_2000767.md index 850e9697ef..aa732e19ec 100644 --- a/md/UBERON/67/UBERON_2000767.md +++ b/md/UBERON/67/UBERON_2000767.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000767 * *Label* = hypaxial region somite 11 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2000867.md b/md/UBERON/67/UBERON_2000867.md index 4d27d7d476..2695ce0b08 100644 --- a/md/UBERON/67/UBERON_2000867.md +++ b/md/UBERON/67/UBERON_2000867.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000867 * *Label* = epaxial region somite 18 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2000967.md b/md/UBERON/67/UBERON_2000967.md index 359f8702c0..1a30a9f377 100644 --- a/md/UBERON/67/UBERON_2000967.md +++ b/md/UBERON/67/UBERON_2000967.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 20 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000967[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 20 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000967, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_2001167.md b/md/UBERON/67/UBERON_2001167.md index e19312e99d..2a99ca060f 100644 --- a/md/UBERON/67/UBERON_2001167.md +++ b/md/UBERON/67/UBERON_2001167.md @@ -26,7 +26,9 @@ ## Other Annotations * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2001467.md b/md/UBERON/67/UBERON_2001467.md index c28365710c..dee27a085f 100644 --- a/md/UBERON/67/UBERON_2001467.md +++ b/md/UBERON/67/UBERON_2001467.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2001567.md b/md/UBERON/67/UBERON_2001567.md index b732699229..b3f65dd3af 100644 --- a/md/UBERON/67/UBERON_2001567.md +++ b/md/UBERON/67/UBERON_2001567.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_2001767.md b/md/UBERON/67/UBERON_2001767.md index ac487b4268..ba669e82a3 100644 --- a/md/UBERON/67/UBERON_2001767.md +++ b/md/UBERON/67/UBERON_2001767.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001767 * *Label* = pectoral fin lepidotrichium 7 - * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray that it is usually branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray that it is usually branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * pectoral fin ray 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001767] + * pectoral fin ray 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001767 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2001867.md b/md/UBERON/67/UBERON_2001867.md index b209661263..0268cc7760 100644 --- a/md/UBERON/67/UBERON_2001867.md +++ b/md/UBERON/67/UBERON_2001867.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001867 * *Label* = post-ceratobranchial cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * basibranchial 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001867] - * copula 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001867] - * pericardial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001867] + * basibranchial 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001867 ] + * copula 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001867 ] + * pericardial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001867 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2001967.md b/md/UBERON/67/UBERON_2001967.md index ce8ac9c8f3..c022b95618 100644 --- a/md/UBERON/67/UBERON_2001967.md +++ b/md/UBERON/67/UBERON_2001967.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001967 * *Label* = orbit - * *Definition* = Anatomical space that is the concavity containing the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical space that is the concavity containing the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2002067.md b/md/UBERON/67/UBERON_2002067.md index 304cf90dce..d1f35f4aeb 100644 --- a/md/UBERON/67/UBERON_2002067.md +++ b/md/UBERON/67/UBERON_2002067.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002067 * *Label* = upper hypural set - * *Definition* = Anatomical cluster including hypural 3 and more dorsal hypurals that supports the dorsal series of principal caudal lepidotrichia or rays. The upper hypural set articulates or fuses to ural centra 3, 4 or 5 (polyural terminology) or ural centrum 2 (diural terminology) depending on the teleost subgroup. The upper hypural set is composed of unpaired median bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster including hypural 3 and more dorsal hypurals that supports the dorsal series of principal caudal lepidotrichia or rays. The upper hypural set articulates or fuses to ural centra 3, 4 or 5 (polyural terminology) or ural centrum 2 (diural terminology) depending on the teleost subgroup. The upper hypural set is composed of unpaired median bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The number of hypurals included in the upper hypural set differs among teleostean subgroups. In basal teleosts this may include hypurals 3 to 9 or 10, whereas in more advanced groups this many include hypurals 3 to 5 or even less. ## Synonyms - * upper hypurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002067] + * upper hypurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002067 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2002167.md b/md/UBERON/67/UBERON_2002167.md index 2b0087a962..991744db0f 100644 --- a/md/UBERON/67/UBERON_2002167.md +++ b/md/UBERON/67/UBERON_2002167.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002167 * *Label* = stegural - * *Definition* = Modified neural arch, probably of ural centrum 4, formed by a bony base that may extend along the dorso-lateral surfaces of ural centra and preural centra 1 or 2 and by a well-developed antero-dorsal membranous projection that extends lateral to the base of epural(s) and anterior toward the neural arches and/or spines of preural centra 1 or 2 (Arratia and Schultze, 1992). The stegural is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Modified neural arch, probably of ural centrum 4, formed by a bony base that may extend along the dorso-lateral surfaces of ural centra and preural centra 1 or 2 and by a well-developed antero-dorsal membranous projection that extends lateral to the base of epural(s) and anterior toward the neural arches and/or spines of preural centra 1 or 2 (Arratia and Schultze, 1992). The stegural is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = It is unclear if the structure named stegural is homologous among teleost subgroups. ## Synonyms - * uroneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002167] + * uroneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002167 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2002081 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2002267.md b/md/UBERON/67/UBERON_2002267.md index 1514c383a2..15e2fc30f8 100644 --- a/md/UBERON/67/UBERON_2002267.md +++ b/md/UBERON/67/UBERON_2002267.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2005067.md b/md/UBERON/67/UBERON_2005067.md index 3c9a9add77..075f7151f0 100644 --- a/md/UBERON/67/UBERON_2005067.md +++ b/md/UBERON/67/UBERON_2005067.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005067 * *Label* = bulbus arteriosus middle layer - * *Definition* = Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * bulbus arteriosus media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005067] + * bulbus arteriosus media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005067 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2005267.md b/md/UBERON/67/UBERON_2005267.md index 46567f0526..81dd892ff4 100644 --- a/md/UBERON/67/UBERON_2005267.md +++ b/md/UBERON/67/UBERON_2005267.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005267 * *Label* = erector muscle - * *Definition* = Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2005367.md b/md/UBERON/67/UBERON_2005367.md index 180e9ac10d..9fd62124d8 100644 --- a/md/UBERON/67/UBERON_2005367.md +++ b/md/UBERON/67/UBERON_2005367.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_2007067.md b/md/UBERON/67/UBERON_2007067.md index b287935f3f..d6e73050cd 100644 --- a/md/UBERON/67/UBERON_2007067.md +++ b/md/UBERON/67/UBERON_2007067.md @@ -6,7 +6,7 @@ ## Synonyms - * gX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0007067] + * gX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0007067 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0005362 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/67/UBERON_3000167.md b/md/UBERON/67/UBERON_3000167.md index abe83ec38e..d25eb61854 100644 --- a/md/UBERON/67/UBERON_3000167.md +++ b/md/UBERON/67/UBERON_3000167.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000167 * *Label* = fenestra nasolateralis - * *Definition* = Elongated opening located on the lateral side of the nasal capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Elongated opening located on the lateral side of the nasal capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3000367.md b/md/UBERON/67/UBERON_3000367.md index b4ef800b1c..5d78428563 100644 --- a/md/UBERON/67/UBERON_3000367.md +++ b/md/UBERON/67/UBERON_3000367.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000367 * *Label* = otic ramus of squamosal - * *Definition* = Ramus (process) that extends medially toward the otic capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ramus (process) that extends medially toward the otic capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * posterior ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000367] - * ramus paroticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000367] + * posterior ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000367 ] + * ramus paroticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000367 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3000467.md b/md/UBERON/67/UBERON_3000467.md index d55d88129a..7a8cdabd0c 100644 --- a/md/UBERON/67/UBERON_3000467.md +++ b/md/UBERON/67/UBERON_3000467.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3000667.md b/md/UBERON/67/UBERON_3000667.md index 52176e7d61..17a034b851 100644 --- a/md/UBERON/67/UBERON_3000667.md +++ b/md/UBERON/67/UBERON_3000667.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000667 * *Label* = pars reuniens - * *Definition* = Area of fusion of the ceratohyals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Area of fusion of the ceratohyals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3000767.md b/md/UBERON/67/UBERON_3000767.md index 737cf7c245..2986d47b04 100644 --- a/md/UBERON/67/UBERON_3000767.md +++ b/md/UBERON/67/UBERON_3000767.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3000867.md b/md/UBERON/67/UBERON_3000867.md index 8d5e737c4f..33aa56ec84 100644 --- a/md/UBERON/67/UBERON_3000867.md +++ b/md/UBERON/67/UBERON_3000867.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000867 * *Label* = agger limitans anterior of ischium - * *Definition* = Shelf-like expansion of the ischium that forms the posterior border of the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Shelf-like expansion of the ischium that forms the posterior border of the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3010067.md b/md/UBERON/67/UBERON_3010067.md index 53b802629f..a205b69cdd 100644 --- a/md/UBERON/67/UBERON_3010067.md +++ b/md/UBERON/67/UBERON_3010067.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010067 * *Label* = M. gracilis minor - * *Definition* = Originates from the pelvic rim just ventral to the anus and merges with M. gracilis major. M. gracilis minor also attaches to the skin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the pelvic rim just ventral to the anus and merges with M. gracilis major. M. gracilis minor also attaches to the skin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3010167.md b/md/UBERON/67/UBERON_3010167.md index 62b6a05084..95d6700b07 100644 --- a/md/UBERON/67/UBERON_3010167.md +++ b/md/UBERON/67/UBERON_3010167.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_3010667.md b/md/UBERON/67/UBERON_3010667.md index 33ae57a461..ae1f0700ea 100644 --- a/md/UBERON/67/UBERON_3010667.md +++ b/md/UBERON/67/UBERON_3010667.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010667 * *Label* = m. intertransversarius capitis inferior - * *Definition* = Involved in the movement of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Involved in the movement of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_4000167.md b/md/UBERON/67/UBERON_4000167.md index 449ce1afd3..0985d41c60 100644 --- a/md/UBERON/67/UBERON_4000167.md +++ b/md/UBERON/67/UBERON_4000167.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000167 * *Label* = caudal fin skeleton - * *Definition* = Median fin skeleton supporting the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Median fin skeleton supporting the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/67/UBERON_4200167.md b/md/UBERON/67/UBERON_4200167.md index 821a624fb7..0ac6c98630 100644 --- a/md/UBERON/67/UBERON_4200167.md +++ b/md/UBERON/67/UBERON_4200167.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0000068.md b/md/UBERON/68/UBERON_0000068.md index 8f7971bd9b..e32588d2e9 100644 --- a/md/UBERON/68/UBERON_0000068.md +++ b/md/UBERON/68/UBERON_0000068.md @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0000168.md b/md/UBERON/68/UBERON_0000168.md index 000dbda621..70fdfa0453 100644 --- a/md/UBERON/68/UBERON_0000168.md +++ b/md/UBERON/68/UBERON_0000168.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000168 * *Label* = segment of colon - * *Definition* = An organ segment that is part of a colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ segment that is part of a colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ segment](../../UBERON/63/UBERON_0000063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0000368.md b/md/UBERON/68/UBERON_0000368.md index cfed63d3de..52a40b62dc 100644 --- a/md/UBERON/68/UBERON_0000368.md +++ b/md/UBERON/68/UBERON_0000368.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000368 * *Label* = adductor brevis - * *Definition* = The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_brevis_muscle] + * *Definition* = The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_brevis_muscle ] ## Synonyms - * Musculus adductos brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22442] + * Musculus adductos brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22442 ] * adductor brevis muscle ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0000468.md b/md/UBERON/68/UBERON_0000468.md index a7830a34dc..363d72e4c4 100644 --- a/md/UBERON/68/UBERON_0000468.md +++ b/md/UBERON/68/UBERON_0000468.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000468 * *Label* = multi-cellular organism - * *Definition* = Anatomical structure that is an individual member of a species and consists of more than one cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000012[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Multi-cellular_organism] + * *Definition* = Anatomical structure that is an individual member of a species and consists of more than one cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000012, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Multi-cellular_organism ] * *Comment* = TODO - split body and mc organism? body continues after death stage ## Synonyms * organism * whole organism - * animal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000042] - * Koerper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001489] + * animal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000042 ] + * Koerper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001489 ] * body - * whole body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001489] + * whole body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001489 ] ## Cross-references @@ -67,8 +67,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that is an individual member of a species.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = organismal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0000968.md b/md/UBERON/68/UBERON_0000968.md index b3a9d413d1..461daa9274 100644 --- a/md/UBERON/68/UBERON_0000968.md +++ b/md/UBERON/68/UBERON_0000968.md @@ -6,11 +6,11 @@ ## Synonyms - * abdomen arthropod sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdomen sensillum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen arthropod sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdomen sensillum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * abdominal sensillum - * arthropod sensillum of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sensillum of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arthropod sensillum of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sensillum of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004461 * *[consider](../../er/oboInOwl#consider.md)* = MAT:0000206 * *[consider](../../er/oboInOwl#consider.md)* = MIAA:0000206 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000968 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_0001068.md b/md/UBERON/68/UBERON_0001068.md index 8d99f9e4fc..8fd02db194 100644 --- a/md/UBERON/68/UBERON_0001068.md +++ b/md/UBERON/68/UBERON_0001068.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001068 * *Label* = skin of back - * *Definition* = A zone of skin that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - distinguish between entire skin of region and arbitrary zone of skin on region ## Synonyms * back skin - * back zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin, dorsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * zone of skin of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * back zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin, dorsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * zone of skin of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001168.md b/md/UBERON/68/UBERON_0001168.md index 6c05a9307d..b2385662b3 100644 --- a/md/UBERON/68/UBERON_0001168.md +++ b/md/UBERON/68/UBERON_0001168.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001168 * *Label* = wall of small intestine - * *Definition* = An anatomical wall that is part of a small intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a small intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anatomical wall of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * small bowel wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * small bowel wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestinal wall - * small intestine anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * small intestine anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * small intestine wall - * wall of small bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * wall of small bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:14615 * MA:0002696 - * UMLS:C1519375 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Small_Intestinal_Wall_Tissue] + * UMLS:C1519375 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Small_Intestinal_Wall_Tissue ] * ncithesaurus:Small_Intestinal_Wall_Tissue ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001268.md b/md/UBERON/68/UBERON_0001268.md index 63e9865d66..13dc5a24d9 100644 --- a/md/UBERON/68/UBERON_0001268.md +++ b/md/UBERON/68/UBERON_0001268.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001268 * *Label* = peritoneal fluid - * *Definition* = Transudate contained in the peritoneal cavity.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peritoneal_fluid] + * *Definition* = Transudate contained in the peritoneal cavity.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peritoneal_fluid ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [peritoneal cavity](../../UBERON/79/UBERON_0001179.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001368.md b/md/UBERON/68/UBERON_0001368.md index e6a732cdde..7ac36da0fe 100644 --- a/md/UBERON/68/UBERON_0001368.md +++ b/md/UBERON/68/UBERON_0001368.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001368 * *Label* = obturator externus - * *Definition* = An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] + * *Definition* = An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] * *Comment* = Definition generalized to accommodate AAO class - "Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus." [AAO:0010043] ## Synonyms - * M. obturator externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010043] + * M. obturator externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010043 ] * external obturator - * external obturator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] - * external obturatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] - * externus obturator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] - * musculus obturatorius externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * obturator externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] - * obturatorius externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] - * obturatus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Obturator_externus_muscle] + * external obturator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] + * external obturatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] + * externus obturator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] + * musculus obturatorius externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * obturator externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] + * obturatorius externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] + * obturatus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Obturator_externus_muscle ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:22299 * MA:0002347 * SCTID:245026009 - * UMLS:C1518528 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Obturator_Externus_Muscle] + * UMLS:C1518528 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Obturator_Externus_Muscle ] * Wikipedia:Obturator_externus_muscle * http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001468.md b/md/UBERON/68/UBERON_0001468.md index 1b2f714c8c..c9fdc373c2 100644 --- a/md/UBERON/68/UBERON_0001468.md +++ b/md/UBERON/68/UBERON_0001468.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001468 * *Label* = intervertebral joint - * *Definition* = The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=87401] + * *Definition* = The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=87401 ] * *Comment* = AO notes: FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra ## Synonyms * inter-centrum joint * inter-vertebral joint - * intervertebral symphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25511] - * joint of vertebral body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25511] + * intervertebral symphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25511 ] + * joint of vertebral body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25511 ] * vertebral joint ## Cross-references @@ -19,7 +19,7 @@ * FMA:25511 * MA:0001514 * SCTID:244512000 - * UMLS:C1182940 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Joint] + * UMLS:C1182940 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Joint ] * ncithesaurus:Vertebral_Joint ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001568.md b/md/UBERON/68/UBERON_0001568.md index 01657554dd..9959959dab 100644 --- a/md/UBERON/68/UBERON_0001568.md +++ b/md/UBERON/68/UBERON_0001568.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001568 * *Label* = muscle of larynx - * *Definition* = the muscles associated with the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002263] + * *Definition* = the muscles associated with the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002263 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * laryngeal muscle * larynx muscle - * larynx muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * larynx muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * musculi laryngeales ## Cross-references @@ -22,7 +22,7 @@ * MA:0001768 * MESH:A02.633.567.500 * SCTID:181744001 - * UMLS:C0023054 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Muscle] + * UMLS:C0023054 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Muscle ] * ncithesaurus:Laryngeal_Muscle ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001668.md b/md/UBERON/68/UBERON_0001668.md index 0f7cfbe586..1f7f638268 100644 --- a/md/UBERON/68/UBERON_0001668.md +++ b/md/UBERON/68/UBERON_0001668.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001668 * *Label* = cerebellar vein - * *Definition* = Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_veins] + * *Definition* = Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cerebellum vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epencephalon-1 vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of epencephalon-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cerebellum vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epencephalon-1 vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of epencephalon-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:51227 * MA:0002093 * SCTID:40693009 - * UMLS:C0226601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellar_Vein] + * UMLS:C0226601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellar_Vein ] * Wikipedia:Cerebellar_veins * ncithesaurus:Cerebellar_Vein @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001768.md b/md/UBERON/68/UBERON_0001768.md index 5fc4f2ff6a..2338afa95f 100644 --- a/md/UBERON/68/UBERON_0001768.md +++ b/md/UBERON/68/UBERON_0001768.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001768 * *Label* = uvea - * *Definition* = pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uvea] + * *Definition* = pigmented middle of the three concentric layers that make up an eye, consisting of the iris, ciliary body and choroid[WP,edited]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uvea ] * *Comment* = TODO - check child terms, isa vs partof. See also MA:0001284 ## Synonyms - * tunica vasculosa of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58103] - * uvea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58103] - * uveal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58103] - * pars iridica retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uvea] - * tunica vasculatis oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uvea] - * tunica vasculosa bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uvea[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vascular layer of eyeball [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58103] + * tunica vasculosa of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58103 ] + * uvea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58103 ] + * uveal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58103 ] + * pars iridica retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uvea ] + * tunica vasculatis oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uvea ] + * tunica vasculosa bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uvea, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vascular layer of eyeball [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58103 ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0002480 * MESH:A09.371.894 * SCTID:280648000 - * UMLS:C0042160 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Uvea] + * UMLS:C0042160 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Uvea ] * Wikipedia:Uvea * http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png @@ -49,8 +49,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = uveal * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001868.md b/md/UBERON/68/UBERON_0001868.md index 1d0b3995d3..62c6f4dba2 100644 --- a/md/UBERON/68/UBERON_0001868.md +++ b/md/UBERON/68/UBERON_0001868.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001868 * *Label* = skin of chest - * *Definition* = A zone of skin that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = check FMA:61415 ## Synonyms - * anterior thoracic region zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * chest skin - * chest zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of anterior chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61416] - * zone of skin of anterior part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61416] - * zone of skin of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of pectoral part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61417] + * chest zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of anterior chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61416 ] + * zone of skin of anterior part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61416 ] + * zone of skin of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of pectoral part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61417 ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0001968.md b/md/UBERON/68/UBERON_0001968.md index ce6b0b0edb..768cae0339 100644 --- a/md/UBERON/68/UBERON_0001968.md +++ b/md/UBERON/68/UBERON_0001968.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001968 * *Label* = semen - * *Definition* = Body substance which consists of spermatozoa and seminal plasma.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semen] + * *Definition* = Body substance which consists of spermatozoa and seminal plasma.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semen ] * *Comment* = Taxon notes: Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined a taxonomically generic way (see comments for UBERON:0006530). ## Synonyms * ejaculate - * sperm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001230] + * sperm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001230 ] ## Cross-references @@ -20,8 +20,8 @@ * MA:0002522 * MESH:A12.200.732 * OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA - * UMLS:C1518159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Male_Genital_System_Fluid_or_Secretion] - * UMLS:C2756969 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semen] + * UMLS:C1518159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Male_Genital_System_Fluid_or_Secretion ] + * UMLS:C2756969 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semen ] * Wikipedia:Semen * http://upload.wikimedia.org/wikipedia/commons/thumb/4/40/Human_semen_in_petri_dish2.jpg/180px-Human_semen_in_petri_dish2.jpg * ncithesaurus:Male_Genital_System_Fluid_or_Secretion @@ -47,8 +47,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = seminal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002068.md b/md/UBERON/68/UBERON_0002068.md index 1a065c4937..f12529b1c0 100644 --- a/md/UBERON/68/UBERON_0002068.md +++ b/md/UBERON/68/UBERON_0002068.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002068 * *Label* = urachus - * *Definition* = A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011852[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * *Definition* = A fibrous remnant of the allantoic stalk, a narrow fetal canal connecting the apex of the urinary bladder with the umbilicus located in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. its lumen is normally obliterated during development, transforming the urachus into a solid cord, a functionless remnant that persists throughout life as the median umbilical ligament; failure of complete lumen obliteration may result in distinct congenital urachal remnant anomalies[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011852, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Synonyms @@ -20,7 +20,7 @@ * MESH:A16.254.835 * RETIRED_EHDAA2:0002138 * SCTID:276858000 - * UMLS:C0041916 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urachus] + * UMLS:C0041916 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urachus ] * VHOG:0000735 * http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A fetal canal connecting the bladder with the allantois, persisting throughout life as a cord (median umbilical ligament). [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = urachal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002168.md b/md/UBERON/68/UBERON_0002168.md index e717b4fe67..df665ec0ed 100644 --- a/md/UBERON/68/UBERON_0002168.md +++ b/md/UBERON/68/UBERON_0002168.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002168 * *Label* = left lung - * *Definition* = Lung which consists of the left upper lobe and left lower lobe.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_lung] + * *Definition* = Lung which consists of the left upper lobe and left lower lobe.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_lung ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -18,7 +18,7 @@ * MA:0000425 * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA * SCTID:361982005 - * UMLS:C0225730 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Lung] + * UMLS:C0225730 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Lung ] * VHOG:0000618 * Wikipedia:Left_lung * http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [pair of lungs](../../UBERON/70/UBERON_0000170.md) and [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002268.md b/md/UBERON/68/UBERON_0002268.md index 5cd2049af4..0588f426e1 100644 --- a/md/UBERON/68/UBERON_0002268.md +++ b/md/UBERON/68/UBERON_0002268.md @@ -7,9 +7,9 @@ ## Synonyms - * olfactory neuroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001772] - * organ olfactus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001772] - * organum olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001772] + * olfactory neuroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001772 ] + * organ olfactus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001772 ] + * organum olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001772 ] ## Cross-references @@ -26,20 +26,21 @@ ## Superclasses * [sense organ](../../UBERON/20/UBERON_0000020.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory system](../../UBERON/25/UBERON_0005725.md) * [capable of part of](../../RO/16/RO_0002216.md) some [sensory perception of smell](../../GO/08/GO_0007608.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable of part of](../../RO/16/RO_0002216.md) some [sensory perception of smell](../../GO/08/GO_0007608.md) and [sense organ](../../UBERON/20/UBERON_0000020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002368.md b/md/UBERON/68/UBERON_0002368.md index a8b01ba895..1b9a8ef8a4 100644 --- a/md/UBERON/68/UBERON_0002368.md +++ b/md/UBERON/68/UBERON_0002368.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002368 * *Label* = endocrine gland - * *Definition* = Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endocrine_gland] + * *Definition* = Endocrine glands are glands of the endocrine system that secrete their products directly into the circulatory system rather than through a duct.[WP, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endocrine_gland ] ## Synonyms - * ductless gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000098] + * ductless gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000098 ] * glandula endocrina - * ductless gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ductless_gland] - * glandulae endocrinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endocrine_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductless gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ductless_gland ] + * glandulae endocrinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endocrine_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A06.407 * OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA * SCTID:40818001 - * UMLS:C0014133 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endocrine_Gland] + * UMLS:C0014133 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endocrine_Gland ] * Wikipedia:Endocrine_gland * http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_endocrine_system.png * ncithesaurus:Endocrine_Gland @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endocrine system](../../UBERON/49/UBERON_0000949.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002468.md b/md/UBERON/68/UBERON_0002468.md index ed20d0231b..cfc0b9080d 100644 --- a/md/UBERON/68/UBERON_0002468.md +++ b/md/UBERON/68/UBERON_0002468.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002468 * *Label* = foliate papilla - * *Definition* = any of the papillae located on the sides of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-8036-0655-99[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006259] + * *Definition* = any of the papillae located on the sides of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-8036-0655-99, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006259 ] ## Synonyms - * foliate papilla of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54823] + * foliate papilla of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54823 ] * foliate papillae * foliate papillae set - * papillae foliatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foliate_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * papillae foliatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foliate_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,9 +19,9 @@ * MA:0002679 * NIF_GrossAnatomy:birnlex_4105 * SCTID:362098003 - * UMLS:C0226969 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4105] - * UMLS:C0545785 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4105] - * UMLS:C0545785 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foliate_Papilla] + * UMLS:C0226969 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4105 ] + * UMLS:C0545785 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4105 ] + * UMLS:C0545785 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foliate_Papilla ] * Wikipedia:Foliate_papilla * http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted][Wikipedia:Foliate_papilla]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002568.md b/md/UBERON/68/UBERON_0002568.md index 44410c6bcd..e00e2414ae 100644 --- a/md/UBERON/68/UBERON_0002568.md +++ b/md/UBERON/68/UBERON_0002568.md @@ -6,17 +6,17 @@ ## Synonyms - * dentate nuclear amiculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72546] - * amiculum nuclei dentati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:686[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * amiculum of the dentate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:686] + * dentate nuclear amiculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72546 ] + * amiculum nuclei dentati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:686, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * amiculum of the dentate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:686 ] ## Cross-references * BAMS:amdt * FMA:72546 * NIF_GrossAnatomy:birnlex_1044 - * NeuroNames:686 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1044] - * UMLS:C0175487 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1044] + * NeuroNames:686 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1044 ] + * UMLS:C0175487 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1044 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002668.md b/md/UBERON/68/UBERON_0002668.md index a1e202f83c..4205117b47 100644 --- a/md/UBERON/68/UBERON_0002668.md +++ b/md/UBERON/68/UBERON_0002668.md @@ -7,11 +7,11 @@ ## Synonyms - * central part of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72457] - * oculomotor nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72457] - * root of oculomotor nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72457] - * 3nf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1323[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fibrae nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:529[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central part of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72457 ] + * oculomotor nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72457 ] + * root of oculomotor nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72457 ] + * 3nf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1323, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fibrae nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:529, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * oculomotor nerve tract ## Cross-references @@ -19,8 +19,8 @@ * BAMS:3nf * FMA:72457 * NIF_GrossAnatomy:birnlex_1323 - * NeuroNames:529 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1323] - * UMLS:C0175408 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1323] + * NeuroNames:529 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1323 ] + * UMLS:C0175408 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1323 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002768.md b/md/UBERON/68/UBERON_0002768.md index 6dcd231b08..e131a19f7e 100644 --- a/md/UBERON/68/UBERON_0002768.md +++ b/md/UBERON/68/UBERON_0002768.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002768 * *Label* = vestibulospinal tract - * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021962] + * *Definition* = a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021962 ] ## Synonyms - * vestibulo-spinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000709] - * tractus vestibulospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibulospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibulospinal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:812] - * vestibulospinal tracts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:812] + * vestibulo-spinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000709 ] + * tractus vestibulospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibulospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibulospinal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:812 ] + * vestibulospinal tracts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:812 ] ## Cross-references * BAMS:vs * FMA:72646 * NIF_GrossAnatomy:birnlex_1643 - * NeuroNames:812 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1643] + * NeuroNames:812 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1643 ] * SCTID:369289007 * TAO:0000709 - * UMLS:C0152404 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1643] + * UMLS:C0152404 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1643 ] * Wikipedia:Vestibulospinal_tract * ZFA:0000709 * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg @@ -36,8 +36,8 @@ * [tract of brain](../../UBERON/02/UBERON_0007702.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter](../../UBERON/16/UBERON_0002316.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Equivalencies @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002868.md b/md/UBERON/68/UBERON_0002868.md index 8baea9015d..38fd613339 100644 --- a/md/UBERON/68/UBERON_0002868.md +++ b/md/UBERON/68/UBERON_0002868.md @@ -6,21 +6,21 @@ ## Synonyms - * commissural nucleus-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54597] - * nucleus of inferior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54597] - * nucleus of inferior commisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2639] - * Cm10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2639[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * commissural nucleus of the vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:754] - * nucleus commissuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:754[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus commissuralis nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:754[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * commissural nucleus-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54597 ] + * nucleus of inferior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54597 ] + * nucleus of inferior commisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2639 ] + * Cm10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2639, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * commissural nucleus of the vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:754 ] + * nucleus commissuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:754, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus commissuralis nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:754, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Cm10 * FMA:54597 * NIF_GrossAnatomy:birnlex_2639 - * NeuroNames:754 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2639] - * UMLS:C0175528 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2639] + * NeuroNames:754 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2639 ] + * UMLS:C0175528 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2639 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0002968.md b/md/UBERON/68/UBERON_0002968.md index b6425d7907..c982bbfbbd 100644 --- a/md/UBERON/68/UBERON_0002968.md +++ b/md/UBERON/68/UBERON_0002968.md @@ -6,9 +6,9 @@ ## Synonyms - * central gray of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72470] - * pontine central gray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72470] - * central gray of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CGPn] + * central gray of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72470 ] + * pontine central gray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72470 ] + * central gray of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CGPn ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003068.md b/md/UBERON/68/UBERON_0003068.md index d99c1f999a..02d9e60e59 100644 --- a/md/UBERON/68/UBERON_0003068.md +++ b/md/UBERON/68/UBERON_0003068.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003068 * *Label* = axial mesoderm - * *Definition* = The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048318[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chordamesoderm] + * *Definition* = The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048318, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chordamesoderm ] ## Synonyms - * chordamesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chordamesoderm] + * chordamesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chordamesoderm ] ## Cross-references @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The portion of the mesoderm underlying the midline of the embryo. [Gastrulation:_From_cells_to_embryo_(2004)_Cold_Spring_Harbor, Glossary_XV, New_York:_Cold_Spring_Harbor_Laboratory_Press, Stern_CD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003168.md b/md/UBERON/68/UBERON_0003168.md index 7752545c2b..bab17eacf6 100644 --- a/md/UBERON/68/UBERON_0003168.md +++ b/md/UBERON/68/UBERON_0003168.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004544 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000534 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003168 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_0003268.md b/md/UBERON/68/UBERON_0003268.md index 92bb776b34..ca86b3b76b 100644 --- a/md/UBERON/68/UBERON_0003268.md +++ b/md/UBERON/68/UBERON_0003268.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003268 * *Label* = tooth of lower jaw - * *Definition* = A calcareous tooth that is part of a lower jaw [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A calcareous tooth that is part of a lower jaw [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * calcareous tooth of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * calcareous tooth of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dentine containing tooth of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dentine containing tooth of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw calcareous tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw dentine containing tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower jaw vertebrate tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tooth of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch calcareous tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch dentine containing tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventral mandibular arch vertebrate tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate tooth of lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate tooth of ventral mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * calcareous tooth of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * calcareous tooth of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dentine containing tooth of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dentine containing tooth of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw calcareous tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw dentine containing tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower jaw vertebrate tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tooth of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch calcareous tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch dentine containing tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventral mandibular arch vertebrate tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate tooth of lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate tooth of ventral mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ * EHDAA:8009 * EMAPA:17917 * MA:0001907 - * UMLS:C1708757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Jaw_Tooth] + * UMLS:C1708757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Jaw_Tooth ] * ncithesaurus:Lower_Jaw_Tooth ## Subsets @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003368.md b/md/UBERON/68/UBERON_0003368.md index 60d68cefec..31a05d358f 100644 --- a/md/UBERON/68/UBERON_0003368.md +++ b/md/UBERON/68/UBERON_0003368.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003368 * *Label* = epithelium of hard palate - * *Definition* = An epithelium that is part of a hard palate [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a hard palate [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelial tissue of hard palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hard palate epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hard palate epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of hard palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hard palate epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hard palate epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003468.md b/md/UBERON/68/UBERON_0003468.md index 882ad0fda1..0654db503e 100644 --- a/md/UBERON/68/UBERON_0003468.md +++ b/md/UBERON/68/UBERON_0003468.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003468 * *Label* = ureteric segment of renal artery - * *Definition* = The ureteral branches of renal artery are small branches which supply the ureter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ureteral_branches_of_renal_artery] + * *Definition* = The ureteral branches of renal artery are small branches which supply the ureter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ureteral_branches_of_renal_artery ] ## Synonyms - * ureteric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002074] + * ureteric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002074 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003568.md b/md/UBERON/68/UBERON_0003568.md index a7c6c8bb91..4b3af7335e 100644 --- a/md/UBERON/68/UBERON_0003568.md +++ b/md/UBERON/68/UBERON_0003568.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003568 * *Label* = neck connective tissue - * *Definition* = A portion of connective tissue that is part of a neck [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a neck [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003668.md b/md/UBERON/68/UBERON_0003668.md index 7f525b8c81..60052f85f3 100644 --- a/md/UBERON/68/UBERON_0003668.md +++ b/md/UBERON/68/UBERON_0003668.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003668 * *Label* = synovial bursa - * *Definition* = a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_bursa] + * *Definition* = a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_bursa ] ## Synonyms - * bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9692] - * bursa synovialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_bursa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9692 ] + * bursa synovialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_bursa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * GAID:252 * MESH:A02.835.583.156 * SCTID:182483003 - * UMLS:C0006441 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Synovial_Bursa] + * UMLS:C0006441 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Synovial_Bursa ] * Wikipedia:Synovial_bursa * galen:Bursa * http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003868.md b/md/UBERON/68/UBERON_0003868.md index f09743e8eb..c68362f32e 100644 --- a/md/UBERON/68/UBERON_0003868.md +++ b/md/UBERON/68/UBERON_0003868.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003868 * *Label* = proximal phalanx of pes - * *Definition* = A proximal phalanx that is part of a pedal digit [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal phalanx that is part of a pedal digit [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot proximal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001387] + * foot proximal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001387 ] * proximal pedal phalanx * proximal phalanx of foot * proximal phalanx of foot digit * proximal phalanx of hind digit * proximal phalanx of pes - * proximal phalanx of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75828] + * proximal phalanx of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75828 ] ## Cross-references * FMA:75828 * MA:0001387 * SCTID:85533000 - * UMLS:C0224020 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Proximal_Phalanx_of_Foot] + * UMLS:C0224020 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Proximal_Phalanx_of_Foot ] * ncithesaurus:Proximal_Phalanx_of_Foot ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) and [proximal phalanx](../../UBERON/02/UBERON_0004302.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0003968.md b/md/UBERON/68/UBERON_0003968.md index 3dc2916eb1..bfc3069dbb 100644 --- a/md/UBERON/68/UBERON_0003968.md +++ b/md/UBERON/68/UBERON_0003968.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003968 * *Label* = peripheral lymph node - * *Definition* = the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008463] + * *Definition* = the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008463 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004068.md b/md/UBERON/68/UBERON_0004068.md index 4639f8f47c..8c9364fa7b 100644 --- a/md/UBERON/68/UBERON_0004068.md +++ b/md/UBERON/68/UBERON_0004068.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004068 * *Label* = medial nasal prominence - * *Definition* = the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009903[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_nasal_prominence] + * *Definition* = the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009903, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_nasal_prominence ] * *Comment* = Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity. ## Synonyms - * medial nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001076] - * medial-nasal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16808] - * prominentia nasalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_nasal_prominence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial nasal swelling [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * nasomedial prominence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * medial nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001076 ] + * medial-nasal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16808 ] + * prominentia nasalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_nasal_prominence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial nasal swelling [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * nasomedial prominence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004268.md b/md/UBERON/68/UBERON_0004268.md index 493ab98bef..71f5601a8f 100644 --- a/md/UBERON/68/UBERON_0004268.md +++ b/md/UBERON/68/UBERON_0004268.md @@ -3,105 +3,105 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004268 * *Label* = lower arm connective tissue - * *Definition* = A portion of connective tissue that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antebrachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antebrachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antebrachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower segment of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of antebrachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of intermediate segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * antebrachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antebrachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antebrachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower segment of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of antebrachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of intermediate segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -117,15 +117,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004368.md b/md/UBERON/68/UBERON_0004368.md index 39f2ebc9e8..c0056a967d 100644 --- a/md/UBERON/68/UBERON_0004368.md +++ b/md/UBERON/68/UBERON_0004368.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004368 * *Label* = Reichert's cartilage - * *Definition* = a continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004916[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/j.1469-7580.2006.00524.x] + * *Definition* = a continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004916, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/j.1469-7580.2006.00524.x ] * *Comment* = AO notes: in EHDAA2 this also develops from 3rd arch Mes from NC. Development notes: Classically defined as: a structure... develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone; its proximal end gives rise to the stylohyoid ligament. Relationship to stapes disputed. ## Synonyms * Reichert cartilage - * hyaloid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004916] - * hyoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000793] + * hyaloid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004916 ] + * hyoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000793 ] * second branchial arch cartilage - * second pharyngeal arch cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004916] + * second pharyngeal arch cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004916 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004468.md b/md/UBERON/68/UBERON_0004468.md index eb0d385495..f6168e7998 100644 --- a/md/UBERON/68/UBERON_0004468.md +++ b/md/UBERON/68/UBERON_0004468.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004468 * *Label* = set of muscles of vertebral column - * *Definition* = Any collection of muscles that is part of a vertebral column [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a vertebral column [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33061] + * muscle group of vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33061 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebral column](../../UBERON/30/UBERON_0001130.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004668.md b/md/UBERON/68/UBERON_0004668.md index a6abf9b5af..3c159c7443 100644 --- a/md/UBERON/68/UBERON_0004668.md +++ b/md/UBERON/68/UBERON_0004668.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004668 * *Label* = fourth ventricle aperture - * *Definition* = One of: the 4th ventricle median or lateral apertures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = One of: the 4th ventricle median or lateral apertures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * aperture of 4th ventricle - * aperture of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242766] + * aperture of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242766 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004768.md b/md/UBERON/68/UBERON_0004768.md index ba3c87a827..42a73cee6a 100644 --- a/md/UBERON/68/UBERON_0004768.md +++ b/md/UBERON/68/UBERON_0004768.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004768 * *Label* = bone of lower jaw - * *Definition* = Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the suprangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: Do not manually classify under here - bones are automatically classified ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0004868.md b/md/UBERON/68/UBERON_0004868.md index c948801e67..109204a6f8 100644 --- a/md/UBERON/68/UBERON_0004868.md +++ b/md/UBERON/68/UBERON_0004868.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004868 * *Label* = tapetum lucidum - * *Definition* = a layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_lucidum] + * *Definition* = a layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_lucidum ] * *Comment* = Function notes: It normally functions at low light levels to provide the light-sensitive retinal cells with a second opportunity for photon-photoreceptor stimulation, thereby enhancing visual sensitivity ## Synonyms - * tapeta lucida [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tapeta lucida [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * tapis luisant@fr ## Cross-references @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tapetum lucidum is a biologic reflector system that is a common feature in the eyes of vertebrates. Typically absent in diurnal animals. In vertebrates, the tapetum lucidum exhibits diverse structure, organization and composition. The tapetum lucidum represents a remarkable example of neural cell and tissue specialization as an adaptation to a dim light environment and, despite these differences, all tapetal variants act to increase retinal sensitivity by reflecting light back through the photoreceptor layer. These variations regarding both its location and structure, as well as the choice of reflective material, may represent selective visual adaptations associated with their feeding behavior, in response to the use of specific wavelengths and amount of reflectance required.[PMID:14738502]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = tapetal * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = Two morphologic types of tapetum lucidum can be observed in the eyes of fish: one in the choroid that occurs in elasmobranchs, and the other which occurs in teleosts and lies in the pigment epithelium of the retina - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005068.md b/md/UBERON/68/UBERON_0005068.md index 9f3b9a4eea..e88bb584b4 100644 --- a/md/UBERON/68/UBERON_0005068.md +++ b/md/UBERON/68/UBERON_0005068.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005068 * *Label* = neural rod - * *Definition* = a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0014024[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000133] + * *Definition* = a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0014024, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000133 ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005168.md b/md/UBERON/68/UBERON_0005168.md index 4032b1d002..0d05f93732 100644 --- a/md/UBERON/68/UBERON_0005168.md +++ b/md/UBERON/68/UBERON_0005168.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005168 * *Label* = interlobular vein - * *Definition* = The venae stellatae join to form the interlobular veins, which pass inward between the rays, receive branches from the plexuses around the convoluted tubules, and, having arrived at the bases of the renal pyramids, join with the venae rectae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_veins] + * *Definition* = The venae stellatae join to form the interlobular veins, which pass inward between the rays, receive branches from the plexuses around the convoluted tubules, and, having arrived at the bases of the renal pyramids, join with the venae rectae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_veins ] ## Synonyms - * venae interlobulares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71634[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * interlobular veins of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71634] - * set of interlobular veins of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71634] - * venae interlobulares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobular_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae interlobulares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71634, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * interlobular veins of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71634 ] + * set of interlobular veins of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71634 ] + * venae interlobulares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobular_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005268.md b/md/UBERON/68/UBERON_0005268.md index c39dbb4286..c475b57781 100644 --- a/md/UBERON/68/UBERON_0005268.md +++ b/md/UBERON/68/UBERON_0005268.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005268 * *Label* = renal cortex artery - * *Definition* = Artery that supplies renal cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Artery that supplies renal cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney cortex artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011314] - * renal cortex artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002582] - * renal cortex arterial system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002582] + * kidney cortex artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011314 ] + * renal cortex artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002582 ] + * renal cortex arterial system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002582 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005368.md b/md/UBERON/68/UBERON_0005368.md index a433c9890b..f43aa71400 100644 --- a/md/UBERON/68/UBERON_0005368.md +++ b/md/UBERON/68/UBERON_0005368.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005368 * *Label* = hippocampus molecular layer - * *Definition* = A cytoarchitectural region of the hippocampus consisting of a composite of the two outermost layers of the hippocampus, the Stratum lacunosum-moleculare and the Stratum radiatum (Carpenter-83). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + nif_annot:NeuroNames_defSource] + * *Definition* = A cytoarchitectural region of the hippocampus consisting of a composite of the two outermost layers of the hippocampus, the Stratum lacunosum-moleculare and the Stratum radiatum (Carpenter-83). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = nif_annot:NeuroNames_defSource ] ## Synonyms - * hippocampal molecular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1211] - * molecular layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1211] + * hippocampal molecular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1211 ] + * molecular layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1211 ] * hippocampus stratum moleculare ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005568.md b/md/UBERON/68/UBERON_0005568.md index 75bc776618..e353a076f2 100644 --- a/md/UBERON/68/UBERON_0005568.md +++ b/md/UBERON/68/UBERON_0005568.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005568 * *Label* = rhombomere 1 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001033] + * roof plate rhombomere 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001033 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 1](../../UBERON/99/UBERON_0005499.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005868.md b/md/UBERON/68/UBERON_0005868.md index 1562cbf4b1..7f7b7ec3f6 100644 --- a/md/UBERON/68/UBERON_0005868.md +++ b/md/UBERON/68/UBERON_0005868.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005868 * *Label* = maxillary prominence - * *Definition* = Continuous with the dorsal end of the mandibular arch, and growing forward from its cephalic border, is a triangular process, the maxillary process (or maxillary prominence), the ventral extremity of which is separated from the mandibular arch by a '>' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_prominence] + * *Definition* = Continuous with the dorsal end of the mandibular arch, and growing forward from its cephalic border, is a triangular process, the maxillary process (or maxillary prominence), the ventral extremity of which is separated from the mandibular arch by a '>' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_prominence ] ## Synonyms * embryonic maxillary process - * maxillary process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001070] + * maxillary process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001070 ] * maxillary process of embryo - * prominentia maxilaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_prominence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * prominentia maxilaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_prominence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * EHDAA:5877 * EMAPA:17359 * SCTID:346355001 - * UMLS:C1513037 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Maxillary_Prominence] + * UMLS:C1513037 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Maxillary_Prominence ] * Wikipedia:Maxillary_prominence * http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png * ncithesaurus:Maxillary_Prominence @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0005968.md b/md/UBERON/68/UBERON_0005968.md index 5337ef034f..1b5127eb97 100644 --- a/md/UBERON/68/UBERON_0005968.md +++ b/md/UBERON/68/UBERON_0005968.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005968 * *Label* = infundibulum of hair follicle - * *Definition* = the portion of the hair follicle from the entrance of the sebaceous gland duct to the surface opening. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:ps[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3565357&group_id=76834&atid=1205376] + * *Definition* = the portion of the hair follicle from the entrance of the sebaceous gland duct to the surface opening. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:ps, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3565357&group_id=76834&atid=1205376 ] ## Synonyms - * dermal piliary canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70722] - * hair follicle infundibulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70722] + * dermal piliary canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70722 ] + * hair follicle infundibulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70722 ] ## Cross-references * FMA:70722 * MA:0003016 * SCTID:319522000 - * UMLS:C0221973 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair_Follicle_Infundibulum] + * UMLS:C0221973 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair_Follicle_Infundibulum ] * ncithesaurus:Hair_Follicle_Infundibulum ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006068.md b/md/UBERON/68/UBERON_0006068.md index 394d78c2e6..6ad1fe3767 100644 --- a/md/UBERON/68/UBERON_0006068.md +++ b/md/UBERON/68/UBERON_0006068.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006068 * *Label* = bone of tail - * *Definition* = A bone that is part of a post-anal tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a post-anal tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tail bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000696] + * tail bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000696 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006168.md b/md/UBERON/68/UBERON_0006168.md index 28963678f4..d2234d5427 100644 --- a/md/UBERON/68/UBERON_0006168.md +++ b/md/UBERON/68/UBERON_0006168.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006268.md b/md/UBERON/68/UBERON_0006268.md index 4ef9f359bd..1d173c5b17 100644 --- a/md/UBERON/68/UBERON_0006268.md +++ b/md/UBERON/68/UBERON_0006268.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006268 * *Label* = notochordal process - * *Definition* = a midline cellular cord formed from the migration of mesenchymal cells from the primitive knot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/05embryonicperiod.htm] + * *Definition* = a midline cellular cord formed from the migration of mesenchymal cells from the primitive knot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/05embryonicperiod.htm ] * *Comment* = The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus. ## Synonyms @@ -16,7 +16,7 @@ * EHDAA2:0001279 * EHDAA:224 * EMAPA:16102 - * UMLS:C1518430 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Notochordal_Process] + * UMLS:C1518430 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Notochordal_Process ] * VHOG:0001213 * ncithesaurus:Notochordal_Process @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006468.md b/md/UBERON/68/UBERON_0006468.md index 59d201d2b0..76f5345b54 100644 --- a/md/UBERON/68/UBERON_0006468.md +++ b/md/UBERON/68/UBERON_0006468.md @@ -6,16 +6,16 @@ ## Synonyms - * T12 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1598] - * t12 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71178] - * twelfth thoracic spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1598] + * T12 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1598 ] + * t12 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71178 ] + * twelfth thoracic spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1598 ] ## Cross-references * FMA:71178 * NIF_GrossAnatomy:birnlex_1598 * SCTID:278774007 - * UMLS:C0457870 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1598] + * UMLS:C0457870 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1598 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006568.md b/md/UBERON/68/UBERON_0006568.md index f7a53b6640..7683d8647e 100644 --- a/md/UBERON/68/UBERON_0006568.md +++ b/md/UBERON/68/UBERON_0006568.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006568 * *Label* = hypothalamic nucleus - * *Definition* = A nucleus of brain that is part of a hypothalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a hypothalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258762] + * nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258762 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypothalamus](../../UBERON/98/UBERON_0001898.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006668.md b/md/UBERON/68/UBERON_0006668.md index a089e896df..ff425287cd 100644 --- a/md/UBERON/68/UBERON_0006668.md +++ b/md/UBERON/68/UBERON_0006668.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006668 * *Label* = carotid canal - * *Definition* = On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_canal] + * *Definition* = On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_canal ] ## Synonyms - * canalis caroticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canalis caroticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006768.md b/md/UBERON/68/UBERON_0006768.md index 299fb63ce1..8e00a64933 100644 --- a/md/UBERON/68/UBERON_0006768.md +++ b/md/UBERON/68/UBERON_0006768.md @@ -6,8 +6,8 @@ ## Synonyms - * epiphysial junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9918] - * line of bony union [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9918] + * epiphysial junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9918 ] + * line of bony union [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9918 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006868.md b/md/UBERON/68/UBERON_0006868.md index 5a8d7f1c5a..ac5d964c50 100644 --- a/md/UBERON/68/UBERON_0006868.md +++ b/md/UBERON/68/UBERON_0006868.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006868 * *Label* = seminal fluid secreting gland - * *Definition* = A gland that secretes a seminal fluid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that secretes a seminal fluid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [produces](../../RO/00/RO_0003000.md) some [seminal fluid](../../UBERON/30/UBERON_0006530.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0006968.md b/md/UBERON/68/UBERON_0006968.md index adb8dfd344..c55deb05b0 100644 --- a/md/UBERON/68/UBERON_0006968.md +++ b/md/UBERON/68/UBERON_0006968.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0007168.md b/md/UBERON/68/UBERON_0007168.md index 732c7a3683..77500eb311 100644 --- a/md/UBERON/68/UBERON_0007168.md +++ b/md/UBERON/68/UBERON_0007168.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007168 * *Label* = long head of biceps brachii - * *Definition* = The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] + * *Definition* = The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle#Origin_and_insertion ] ## Synonyms - * caput longum (musculus biceps brachii) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37683] + * caput longum (musculus biceps brachii) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37683 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0007268.md b/md/UBERON/68/UBERON_0007268.md index 9c4cd12727..be9d476016 100644 --- a/md/UBERON/68/UBERON_0007268.md +++ b/md/UBERON/68/UBERON_0007268.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007268 * *Label* = upper esophageal sphincter - * *Definition* = The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_esophageal_sphincter] + * *Definition* = The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_esophageal_sphincter ] ## Synonyms - * pharyngoesophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_esophageal_sphincter] + * pharyngoesophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_esophageal_sphincter ] * upper esophageal sphincter muscle - * upper oesophageal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Upper_esophageal_sphincter] + * upper oesophageal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Upper_esophageal_sphincter ] ## Cross-references - * UMLS:C1451819 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Esophageal_Sphincter] + * UMLS:C1451819 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Esophageal_Sphincter ] * Wikipedia:Upper_esophageal_sphincter * http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png * ncithesaurus:Upper_Esophageal_Sphincter @@ -24,7 +24,7 @@ ## Superclasses * [striated muscle sphincter](../../UBERON/22/UBERON_0007522.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [upper esophagus](../../UBERON/72/UBERON_0013472.md) * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [striated muscle tissue](../../UBERON/36/UBERON_0002036.md) ## Equivalencies @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0007768.md b/md/UBERON/68/UBERON_0007768.md index c7ad9c99be..7a17567655 100644 --- a/md/UBERON/68/UBERON_0007768.md +++ b/md/UBERON/68/UBERON_0007768.md @@ -6,7 +6,7 @@ ## Synonyms - * premammillary nucleus ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PMv] + * premammillary nucleus ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PMv ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0008268.md b/md/UBERON/68/UBERON_0008268.md index a9d6869c7f..aae5fabe91 100644 --- a/md/UBERON/68/UBERON_0008268.md +++ b/md/UBERON/68/UBERON_0008268.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008268 * *Label* = right supracardinal vein - * *Definition* = The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN-10:0443065837] + * *Definition* = The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN-10:0443065837 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009468.md b/md/UBERON/68/UBERON_0009468.md index dbf2f0a31f..c646689ab8 100644 --- a/md/UBERON/68/UBERON_0009468.md +++ b/md/UBERON/68/UBERON_0009468.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009468 * *Label* = basiotic bone - * *Definition* = a small bone in the fetus between the basilar process and the basisphenoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/basiotic+bone] + * *Definition* = a small bone in the fetus between the basilar process and the basisphenoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/basiotic+bone ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009568.md b/md/UBERON/68/UBERON_0009568.md index ae94c58d94..231213df46 100644 --- a/md/UBERON/68/UBERON_0009568.md +++ b/md/UBERON/68/UBERON_0009568.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009568 * *Label* = trunk region of vertebral column - * *Definition* = Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae. In organisms that have a thoracic and lumbar distinction, this corresponds to the sum of both of these regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] ## Synonyms * thoracolumbar column * thoracolumbar region of vertebral column - * thoracolumbar vertebrae set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72066] + * thoracolumbar vertebrae set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72066 ] * thoracolumbar vertebral column * trunk vertebral column - * presacral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000612] - * thoracolumbar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000612] - * trunk region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000612] + * presacral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000612 ] + * thoracolumbar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000612 ] + * trunk region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000612 ] * trunk skeleton * trunk spine @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) and [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the vertebral column between the atlas and the sacrum consisting of seven to 285 vertebrae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009668.md b/md/UBERON/68/UBERON_0009668.md index a0959aa9c3..a055aac2ab 100644 --- a/md/UBERON/68/UBERON_0009668.md +++ b/md/UBERON/68/UBERON_0009668.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009768.md b/md/UBERON/68/UBERON_0009768.md index 4133d4e526..d64403ff3a 100644 --- a/md/UBERON/68/UBERON_0009768.md +++ b/md/UBERON/68/UBERON_0009768.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009768 * *Label* = distal interphalangeal joint - * *Definition* = An inter-phalangeal joint that connects a distal phalanx to either a medial or proximal phalanx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An inter-phalangeal joint that connects a distal phalanx to either a medial or proximal phalanx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * DIJ joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] - * DIP joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interphalangeal_articulations_of_the_hand] + * DIJ joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] + * DIP joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interphalangeal_articulations_of_the_hand ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [interphalangeal joint](../../UBERON/58/UBERON_0006658.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009868.md b/md/UBERON/68/UBERON_0009868.md index a44258aa6d..5c9eb72239 100644 --- a/md/UBERON/68/UBERON_0009868.md +++ b/md/UBERON/68/UBERON_0009868.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009868 * *Label* = Hatschek's left diverticulum - * *Definition* = A Hatschek's diverticulum that is in the left side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A Hatschek's diverticulum that is in the left side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [Hatschek's diverticulum](../../UBERON/67/UBERON_0009867.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0009968.md b/md/UBERON/68/UBERON_0009968.md index a419153a44..0478ba5d02 100644 --- a/md/UBERON/68/UBERON_0009968.md +++ b/md/UBERON/68/UBERON_0009968.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0010168.md b/md/UBERON/68/UBERON_0010168.md index 9ca9717746..c65c9b3694 100644 --- a/md/UBERON/68/UBERON_0010168.md +++ b/md/UBERON/68/UBERON_0010168.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010168 * *Label* = collection of eyelashes - * *Definition* = A collection of hair on face that is part of a eyelash. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collection of hair on face that is part of a eyelash. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cilia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eyelashes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70742] - * eyelashes set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70742] - * set of eyelashes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70742] + * cilia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eyelashes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70742 ] + * eyelashes set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70742 ] + * set of eyelashes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70742 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hair on face](../../UBERON/65/UBERON_0010165.md) and [has member](../../RO/51/RO_0002351.md) some [eyelash](../../UBERON/02/UBERON_0001702.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0010268.md b/md/UBERON/68/UBERON_0010268.md index 9806680642..52c656a090 100644 --- a/md/UBERON/68/UBERON_0010268.md +++ b/md/UBERON/68/UBERON_0010268.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010268 * *Label* = obsolete superior reticular formation - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021729] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021729 ] ## Synonyms @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010268 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_0010368.md b/md/UBERON/68/UBERON_0010368.md index 558202366e..a4e6a45af5 100644 --- a/md/UBERON/68/UBERON_0010368.md +++ b/md/UBERON/68/UBERON_0010368.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010368 * *Label* = pulmonary lobule - * *Definition* = The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pulmonary_Lobule] + * *Definition* = The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in diameter. Each lobule is composed of 4-8 terminal bronchioles and their distal alveolar ducts and sacs. The lobules are separated by fibrous interlobular septa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pulmonary_Lobule ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobule](../../UBERON/11/UBERON_0009911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0010568.md b/md/UBERON/68/UBERON_0010568.md index ba44175ffc..aabb1ff486 100644 --- a/md/UBERON/68/UBERON_0010568.md +++ b/md/UBERON/68/UBERON_0010568.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010568 * *Label* = manual digit 4 metacarpus pre-cartilage condensation - * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 4 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000533] - * fore limb digit 4 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 4 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000533 ] + * fore limb digit 4 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal 4 pre-cartilage condensation - * hand digit 4 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 4 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4 mesenchyme](../../UBERON/94/UBERON_0005694.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0010868.md b/md/UBERON/68/UBERON_0010868.md index bf3dda5fb7..33295e1bb3 100644 --- a/md/UBERON/68/UBERON_0010868.md +++ b/md/UBERON/68/UBERON_0010868.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010868 * *Label* = uropropatagium - * *Definition* = the membrane that is stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interfemoral_membrane] + * *Definition* = the membrane that is stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interfemoral_membrane ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011168.md b/md/UBERON/68/UBERON_0011168.md index b98895f82a..c4f487c916 100644 --- a/md/UBERON/68/UBERON_0011168.md +++ b/md/UBERON/68/UBERON_0011168.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011168 * *Label* = postfrontal bone - * *Definition* = a bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/postfrontal] + * *Definition* = a bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/postfrontal ] ## Synonyms @@ -21,7 +21,7 @@ * [dermal bone](../../UBERON/07/UBERON_0008907.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Equivalencies @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8570 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011268.md b/md/UBERON/68/UBERON_0011268.md index 6c9ba065d5..644bf1d0d5 100644 --- a/md/UBERON/68/UBERON_0011268.md +++ b/md/UBERON/68/UBERON_0011268.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011268 * *Label* = sublingua - * *Definition* = a secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingua] + * *Definition* = a secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingua ] ## Synonyms - * second tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingua] - * under-tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingua] + * second tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingua ] + * under-tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingua ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011368.md b/md/UBERON/68/UBERON_0011368.md index ac71a79215..fb4fe698b4 100644 --- a/md/UBERON/68/UBERON_0011368.md +++ b/md/UBERON/68/UBERON_0011368.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011368 * *Label* = brachiocephalic muscle - * *Definition* = The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://ccg.murdoch.edu.au/museum/] + * *Definition* = The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://ccg.murdoch.edu.au/museum/ ] * *Comment* = The brachiocephalicus is more complex than other muscles of the forelimb. It consists of 2 elements that unite at the clavicle in dogs. In dogs the caudal part, known as the cleidobrachialis, runs from the clavicle to the humerus and is closely associated with the deltoid. The cranial portion runs from the clavicle to various attachments via a broad aponeurosis on the upper part of the head and neck. It is called the cleidomastoideus in the dog because it inserts on the mastoid process of the temporal bone. It may have a different name, like cleido-occipitalis, in other mammals. The name brachiocephalicus signifies that this complex of muscles runs from the upper arm to the head and does not specify the details of muscle attachments because these vary so much from species to species. The brachiocephalicus advances the limb and may also extend the shoulder joint, but this depends on the cranial attachment being fixed and the limb being free to move. However, when the forelimb is firmly on the ground and the head is free to move, it forces the head and neck either ventrally or to one side depending on whether or not both muscles act in tandem ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [attaches_to](../../RO/71/RO_0002371.md) some [mastoid process of temporal bone](../../UBERON/20/UBERON_0011220.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011668.md b/md/UBERON/68/UBERON_0011668.md index a2a0ee367d..a4bf32ebb9 100644 --- a/md/UBERON/68/UBERON_0011668.md +++ b/md/UBERON/68/UBERON_0011668.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011671 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011668 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_0011768.md b/md/UBERON/68/UBERON_0011768.md index 40668bde1e..a7982bbc04 100644 --- a/md/UBERON/68/UBERON_0011768.md +++ b/md/UBERON/68/UBERON_0011768.md @@ -7,8 +7,8 @@ ## Synonyms - * epiphyseal stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001292] - * pineal stalk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001292] + * epiphyseal stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001292 ] + * pineal stalk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001292 ] * habenula ## Cross-references @@ -41,8 +41,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of pineal complex (TAO:0001359)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The epithalamus contains the epiphysis (pineal gland and related structures), which is located at the end of a stalk, the epiphyseal stalk.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011868.md b/md/UBERON/68/UBERON_0011868.md index f4fa8a391c..cd0d5407f5 100644 --- a/md/UBERON/68/UBERON_0011868.md +++ b/md/UBERON/68/UBERON_0011868.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011868 * *Label* = midcarpal joint - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midcarpal_joint] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midcarpal_joint ] ## Synonyms - * articulatio mediocarpalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midcarpal_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transverse carpal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35293] + * articulatio mediocarpalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midcarpal_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transverse carpal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35293 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011868 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0011968.md b/md/UBERON/68/UBERON_0011968.md index 21a5104062..d717e34735 100644 --- a/md/UBERON/68/UBERON_0011968.md +++ b/md/UBERON/68/UBERON_0011968.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011968 * *Label* = radio-carpal joint - * *Definition* = A skeletal joint that connects a radius bone and connects a carpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a radius bone and connects a carpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * articulatio radiocarpea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wrist[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radiocarpal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wrist] + * articulatio radiocarpea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wrist, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radiocarpal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wrist ] * radiocarpal joint - * wrist joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35291[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * wrist joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35291, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [carpal skeleton](../../UBERON/80/UBERON_0009880.md) and [connects](../../ts/core#connects.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011968 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0012068.md b/md/UBERON/68/UBERON_0012068.md index 03f78479be..4e2ac9d69d 100644 --- a/md/UBERON/68/UBERON_0012068.md +++ b/md/UBERON/68/UBERON_0012068.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012068 * *Label* = right lung middle lobe bronchiole - * *Definition* = A bronchiole that is part of a middle lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a middle lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle lobe of right lung](../../UBERON/74/UBERON_0002174.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0012168.md b/md/UBERON/68/UBERON_0012168.md index 209f06dbde..0ffcb76edb 100644 --- a/md/UBERON/68/UBERON_0012168.md +++ b/md/UBERON/68/UBERON_0012168.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012168 * *Label* = umbilical cord blood - * *Definition* = blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cord_blood] + * *Definition* = blood that remains in the placenta and in the attached umbilical cord after childbirth[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cord_blood ] * *Comment* = Cord blood is collected because it contains stem cells, which can be used to treat hematopoietic and genetic disorders.[WP] ## Synonyms - * cord blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004053] - * fetal blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.207.152.200] - * umbilical cord blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.207.152.200] + * cord blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004053 ] + * fetal blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.207.152.200 ] + * umbilical cord blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.207.152.200 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood](../../UBERON/78/UBERON_0000178.md) and [located_in](../../RO/25/RO_0001025.md) some [umbilical artery](../../UBERON/10/UBERON_0001310.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0012268.md b/md/UBERON/68/UBERON_0012268.md index 7bdf56f307..a53bcecac9 100644 --- a/md/UBERON/68/UBERON_0012268.md +++ b/md/UBERON/68/UBERON_0012268.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012268 * *Label* = equine forelimb splint bone - * *Definition* = A splint bone in the metacarpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A splint bone in the metacarpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In future this class may be replaced by a more taxon-neutral class grouping metarsal bones 2 or 4 ## Synonyms - * forelimb splint bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788] + * forelimb splint bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788 ] * metacarpal bone 2 or 4 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [equine splint bone](../../UBERON/67/UBERON_0012267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012268 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0012368.md b/md/UBERON/68/UBERON_0012368.md index 481786223c..79c31964e4 100644 --- a/md/UBERON/68/UBERON_0012368.md +++ b/md/UBERON/68/UBERON_0012368.md @@ -6,9 +6,9 @@ ## Synonyms - * circular smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005213] - * inner muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62899] - * inner muscularis layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62899] + * circular smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005213 ] + * inner muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62899 ] + * inner muscularis layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62899 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012368 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0012468.md b/md/UBERON/68/UBERON_0012468.md index 69fbcc0b09..cfdb8f7800 100644 --- a/md/UBERON/68/UBERON_0012468.md +++ b/md/UBERON/68/UBERON_0012468.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012468 * *Label* = anal tooth - * *Definition* = Tooth-like structure that typically forms a ring surrounding the anus of some Holothuriidae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Tooth-like structure that typically forms a ring surrounding the anus of some Holothuriidae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * anal teeth [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * anal teeth [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * cloacal tooth * perianal tooth @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) and [tooth-like structure](../../UBERON/13/UBERON_0003913.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0013068.md b/md/UBERON/68/UBERON_0013068.md index bba4ff13f3..e5e75a45d4 100644 --- a/md/UBERON/68/UBERON_0013068.md +++ b/md/UBERON/68/UBERON_0013068.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013068 * *Label* = palatine torus - * *Definition* = A bony protuberance sometimes found on the hard palate at the junction of the intermaxillary suture and the transverse palatine suture. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryP.html] + * *Definition* = A bony protuberance sometimes found on the hard palate at the junction of the intermaxillary suture and the transverse palatine suture. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryP.html ] ## Synonyms - * crista palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59201] - * torus palatinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryP.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * crista palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59201 ] + * torus palatinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryP.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0013168.md b/md/UBERON/68/UBERON_0013168.md index 54134a1459..eb36f7e8f4 100644 --- a/md/UBERON/68/UBERON_0013168.md +++ b/md/UBERON/68/UBERON_0013168.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013168 * *Label* = thyroepiglottic ligament - * *Definition* = Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroepiglottic_ligament] + * *Definition* = Laryngeal ligament that connects the epiglottis to the thyroid cartilage[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroepiglottic_ligament ] ## Synonyms - * ligamentum thyroepiglotticum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thyroepiglottic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55230] + * ligamentum thyroepiglotticum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thyroepiglottic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55230 ] ## Cross-references * FMA:55230 * SCTID:279562000 - * UMLS:C0225514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroepiglottic_Ligament] + * UMLS:C0225514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroepiglottic_Ligament ] * Wikipedia:Thyroepiglottic_ligament * ncithesaurus:Thyroepiglottic_Ligament @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [epiglottic cartilage](../../UBERON/42/UBERON_0001742.md) and [connects](../../ts/core#connects.md) some [thyroid cartilage](../../UBERON/38/UBERON_0001738.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013168 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0013468.md b/md/UBERON/68/UBERON_0013468.md index e5ae243587..95a0967888 100644 --- a/md/UBERON/68/UBERON_0013468.md +++ b/md/UBERON/68/UBERON_0013468.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013468 * *Label* = zygomatic fossa - * *Definition* = The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_fossa] + * *Definition* = The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_fossa ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0013768.md b/md/UBERON/68/UBERON_0013768.md index 894fb1f8ce..8662ec531c 100644 --- a/md/UBERON/68/UBERON_0013768.md +++ b/md/UBERON/68/UBERON_0013768.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013768 * *Label* = great vessel of heart - * *Definition* = Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Great_vessels] + * *Definition* = Great vessels is a term used to refer collectively to the large vessels that bring blood to and from the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Great_vessels ] * *Comment* = Groupings may vary - typically pulmonary vessels and aorta and vena cavae ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0014468.md b/md/UBERON/68/UBERON_0014468.md index 3d1c0b4bc8..cd9a4beac3 100644 --- a/md/UBERON/68/UBERON_0014468.md +++ b/md/UBERON/68/UBERON_0014468.md @@ -6,10 +6,10 @@ ## Synonyms - * ansoparamedian fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081256] - * fissura ansoparamedianis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * lunogracile fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081256] - * lunogracile fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75137] + * ansoparamedian fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081256 ] + * fissura ansoparamedianis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * lunogracile fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081256 ] + * lunogracile fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75137 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0014568.md b/md/UBERON/68/UBERON_0014568.md index d24659c628..bf095c3248 100644 --- a/md/UBERON/68/UBERON_0014568.md +++ b/md/UBERON/68/UBERON_0014568.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014568 * *Label* = dorsal tegmental nucleus pars dorsalis - * *Definition* = Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090407] + * *Definition* = Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090407 ] * *Comment* = According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human ## Synonyms - * dorsal tegmental nucleus pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090407] - * dorsal tegmental nucleus of gudden pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090407] + * dorsal tegmental nucleus pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090407 ] + * dorsal tegmental nucleus of gudden pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090407 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014568 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0014668.md b/md/UBERON/68/UBERON_0014668.md index 80aad4f404..6f6ac1fcd9 100644 --- a/md/UBERON/68/UBERON_0014668.md +++ b/md/UBERON/68/UBERON_0014668.md @@ -6,7 +6,7 @@ ## Synonyms - * distal interphalangeal joint of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35334] + * distal interphalangeal joint of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35334 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014668 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0014768.md b/md/UBERON/68/UBERON_0014768.md index 8c1bdabc88..7803109017 100644 --- a/md/UBERON/68/UBERON_0014768.md +++ b/md/UBERON/68/UBERON_0014768.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014768 * *Label* = superior palpebral vein - * *Definition* = A blood vessel that drains from from an upper eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A blood vessel that drains from from an upper eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * venae palpebrales superiores [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae palpebrales superiores [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) and [palpebral vein](../../UBERON/69/UBERON_0014769.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014768 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_0015068.md b/md/UBERON/68/UBERON_0015068.md index 684081c83c..dd849daa18 100644 --- a/md/UBERON/68/UBERON_0015068.md +++ b/md/UBERON/68/UBERON_0015068.md @@ -6,7 +6,7 @@ ## Synonyms - * distal carpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000847] + * distal carpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000847 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015068 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000068.md b/md/UBERON/68/UBERON_2000068.md index 4f0fbe5b77..0f052e68ad 100644 --- a/md/UBERON/68/UBERON_2000068.md +++ b/md/UBERON/68/UBERON_2000068.md @@ -6,7 +6,7 @@ ## Synonyms - * proneural clusters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000068[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * proneural clusters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000068, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000168.md b/md/UBERON/68/UBERON_2000168.md index 365e4aba5d..3123264c4e 100644 --- a/md/UBERON/68/UBERON_2000168.md +++ b/md/UBERON/68/UBERON_2000168.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000168 * *Label* = anterior macula - * *Definition* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * am [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000168] + * am [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000168 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000268.md b/md/UBERON/68/UBERON_2000268.md index 87baa8d4cd..e59320681a 100644 --- a/md/UBERON/68/UBERON_2000268.md +++ b/md/UBERON/68/UBERON_2000268.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000268 * *Label* = anal fin proximal radial bone - * *Definition* = anal fin proximal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin proximal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * basal radial of anal fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] - * proximal anal-fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] + * basal radial of anal fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] + * proximal anal-fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] ## Cross-references @@ -26,14 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin proximal radial element](../../UBERON/68/UBERON_2100268.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000468.md b/md/UBERON/68/UBERON_2000468.md index 22a425fe91..5973ebfb88 100644 --- a/md/UBERON/68/UBERON_2000468.md +++ b/md/UBERON/68/UBERON_2000468.md @@ -6,7 +6,7 @@ ## Synonyms - * anterior crista primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000468[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * anterior crista primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000468, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000768.md b/md/UBERON/68/UBERON_2000768.md index 665b9e289a..03ff19d494 100644 --- a/md/UBERON/68/UBERON_2000768.md +++ b/md/UBERON/68/UBERON_2000768.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000768 * *Label* = hypaxial region somite 14 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000868.md b/md/UBERON/68/UBERON_2000868.md index 2a8b5ce5ea..e36fdacad4 100644 --- a/md/UBERON/68/UBERON_2000868.md +++ b/md/UBERON/68/UBERON_2000868.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000868 * *Label* = epaxial region somite 20 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2000968.md b/md/UBERON/68/UBERON_2000968.md index 3958220d8b..6009d33432 100644 --- a/md/UBERON/68/UBERON_2000968.md +++ b/md/UBERON/68/UBERON_2000968.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000968 * *Label* = hypaxial region somite 21 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2001168.md b/md/UBERON/68/UBERON_2001168.md index 818e8f518c..887be9dad7 100644 --- a/md/UBERON/68/UBERON_2001168.md +++ b/md/UBERON/68/UBERON_2001168.md @@ -27,7 +27,9 @@ ## Other Annotations * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2001468.md b/md/UBERON/68/UBERON_2001468.md index 519d20b4a4..b5b17ce38d 100644 --- a/md/UBERON/68/UBERON_2001468.md +++ b/md/UBERON/68/UBERON_2001468.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001468 * *Label* = anterior lateral line system - * *Definition* = The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001468 + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2001568.md b/md/UBERON/68/UBERON_2001568.md index 98ea2f37bc..00f839a2f6 100644 --- a/md/UBERON/68/UBERON_2001568.md +++ b/md/UBERON/68/UBERON_2001568.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_2001768.md b/md/UBERON/68/UBERON_2001768.md index 530172ecbf..06fd1ca86b 100644 --- a/md/UBERON/68/UBERON_2001768.md +++ b/md/UBERON/68/UBERON_2001768.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001768 * *Label* = retractor tentaculi - * *Definition* = Bilaterally paired dorsal hyoid arch muscle that retracts the maxillary barbel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bilaterally paired dorsal hyoid arch muscle that retracts the maxillary barbel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2001968.md b/md/UBERON/68/UBERON_2001968.md index 321e9ee847..b6bea048a8 100644 --- a/md/UBERON/68/UBERON_2001968.md +++ b/md/UBERON/68/UBERON_2001968.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001968 * *Label* = outer mental barbel - * *Definition* = Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2002068.md b/md/UBERON/68/UBERON_2002068.md index 84aed339d1..ffc452f589 100644 --- a/md/UBERON/68/UBERON_2002068.md +++ b/md/UBERON/68/UBERON_2002068.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002068 * *Label* = lower hypural set - * *Definition* = Anatomical cluster including hypurals 1 and 2 that supports part of the ventral principal caudal lepidotrichia or rays and that separates from the dorsal hypural set through the hypural diastema. The lower hypural set articulates or fuses to ural centra 1 and 2 (polyural terminology) or ural centrum 1 (diural terminology) depending on the teleost subgroup. The lower hypural set is composed of unpaired median bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster including hypurals 1 and 2 that supports part of the ventral principal caudal lepidotrichia or rays and that separates from the dorsal hypural set through the hypural diastema. The lower hypural set articulates or fuses to ural centra 1 and 2 (polyural terminology) or ural centrum 1 (diural terminology) depending on the teleost subgroup. The lower hypural set is composed of unpaired median bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * lower hypurals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002068] + * lower hypurals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002068 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2002168.md b/md/UBERON/68/UBERON_2002168.md index c1f7f19b40..595ed5a189 100644 --- a/md/UBERON/68/UBERON_2002168.md +++ b/md/UBERON/68/UBERON_2002168.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002168 * *Label* = preural centrum 1 + ural centrum 1 + ural centrum 2 - * *Definition* = Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2002268.md b/md/UBERON/68/UBERON_2002268.md index 8bdf2235d6..1d42c7e7ff 100644 --- a/md/UBERON/68/UBERON_2002268.md +++ b/md/UBERON/68/UBERON_2002268.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2005068.md b/md/UBERON/68/UBERON_2005068.md index dc77c50034..33a2392e5b 100644 --- a/md/UBERON/68/UBERON_2005068.md +++ b/md/UBERON/68/UBERON_2005068.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005068 * *Label* = bulbus arteriosus inner layer - * *Definition* = Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * bulbus arteriosus intima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005068] + * bulbus arteriosus intima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005068 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2005268.md b/md/UBERON/68/UBERON_2005268.md index b95003864b..4aaeb4e07e 100644 --- a/md/UBERON/68/UBERON_2005268.md +++ b/md/UBERON/68/UBERON_2005268.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005268 * *Label* = preopercle horizontal limb-symplectic joint - * *Definition* = Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Joint that articulates the posterior edge of the preopercle horizontal limb with the symplectic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = In ZFA, is a type of fibrous joint. May need to stay more general in TAO. ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [preopercle horizontal limb](../../UBERON/89/UBERON_2000289.md) and [core#connects](../../ts/core#connects.md) some [symplectic](../../UBERON/92/UBERON_2000692.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T07:25:19Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2005368.md b/md/UBERON/68/UBERON_2005368.md index e09b7b5b4f..cadadad0f3 100644 --- a/md/UBERON/68/UBERON_2005368.md +++ b/md/UBERON/68/UBERON_2005368.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2100268.md b/md/UBERON/68/UBERON_2100268.md index 0f3303ae02..e56d2f6861 100644 --- a/md/UBERON/68/UBERON_2100268.md +++ b/md/UBERON/68/UBERON_2100268.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100268 * *Label* = anal fin proximal radial element - * *Definition* = Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Rod-like internal median skeletal support elememts of the anal fin, which articulate with the distal radial elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * basal radial of anal fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] - * proximal anal-fin radial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] + * basal radial of anal fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] + * proximal anal-fin radial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] ## Cross-references @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_2200268.md b/md/UBERON/68/UBERON_2200268.md index 5e43eb0781..1a2575322b 100644 --- a/md/UBERON/68/UBERON_2200268.md +++ b/md/UBERON/68/UBERON_2200268.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200268 * *Label* = anal fin proximal radial cartilage - * *Definition* = anal fin proximal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin proximal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms - * basal radial of anal fin cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] - * proximal anal-fin radial cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000268] + * basal radial of anal fin cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] + * proximal anal-fin radial cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000268 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin proximal radial element](../../UBERON/68/UBERON_2100268.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3000068.md b/md/UBERON/68/UBERON_3000068.md index dd8627fd1b..87d685b178 100644 --- a/md/UBERON/68/UBERON_3000068.md +++ b/md/UBERON/68/UBERON_3000068.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000068 * *Label* = cartilago ectochoanalis - * *Definition* = Lateral cartilaginous border of the fenestra endochoanalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Lateral cartilaginous border of the fenestra endochoanalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3000368.md b/md/UBERON/68/UBERON_3000368.md index bb86deade8..c87f112133 100644 --- a/md/UBERON/68/UBERON_3000368.md +++ b/md/UBERON/68/UBERON_3000368.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000368 * *Label* = otoccipital - * *Definition* = Fused prootic and exoccipital bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Fused prootic and exoccipital bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3000668.md b/md/UBERON/68/UBERON_3000668.md index e149a2af65..fe839fb4b8 100644 --- a/md/UBERON/68/UBERON_3000668.md +++ b/md/UBERON/68/UBERON_3000668.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3000868.md b/md/UBERON/68/UBERON_3000868.md index 08870dd478..5f83241fe0 100644 --- a/md/UBERON/68/UBERON_3000868.md +++ b/md/UBERON/68/UBERON_3000868.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000868 * *Label* = obsolete supra-acetabular expansion - * *Definition* = Dorsal portion of the ilial corpus, located above the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal portion of the ilial corpus, located above the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * dorsal acetabular expansion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000868] - * pars ascendens ilei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000868] + * dorsal acetabular expansion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000868 ] + * pars ascendens ilei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000868 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:4200125 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/68/UBERON_3010068.md b/md/UBERON/68/UBERON_3010068.md index 3942c4d1df..13cba4c49f 100644 --- a/md/UBERON/68/UBERON_3010068.md +++ b/md/UBERON/68/UBERON_3010068.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010068 * *Label* = M. semimembranosus - * *Definition* = Originates on the ventro-lateral surface of the ischium below the anus and inserts on the ventro-medial aspect of the femur and the head of the tibiofibula by a stout tendon, which is formed by the ventral origin of the plantaris longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventro-lateral surface of the ischium below the anus and inserts on the ventro-medial aspect of the femur and the head of the tibiofibula by a stout tendon, which is formed by the ventral origin of the plantaris longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3010168.md b/md/UBERON/68/UBERON_3010168.md index 441d8660ac..fcf3ac0a10 100644 --- a/md/UBERON/68/UBERON_3010168.md +++ b/md/UBERON/68/UBERON_3010168.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_3010668.md b/md/UBERON/68/UBERON_3010668.md index fcf8c381bb..915ecaa8ef 100644 --- a/md/UBERON/68/UBERON_3010668.md +++ b/md/UBERON/68/UBERON_3010668.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010668 * *Label* = ramules cutaneous - * *Definition* = Many branches of the maxillary ramus that terminate in the integument of the maxillary region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Many branches of the maxillary ramus that terminate in the integument of the maxillary region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010672 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_4000168.md b/md/UBERON/68/UBERON_4000168.md index dc7ee28f1e..49b73b3e7c 100644 --- a/md/UBERON/68/UBERON_4000168.md +++ b/md/UBERON/68/UBERON_4000168.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000168 * *Label* = dorsal fin skeleton - * *Definition* = Median fin skeleton located on the dorsal surface of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Median fin skeleton located on the dorsal surface of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_4200068.md b/md/UBERON/68/UBERON_4200068.md index d3f6e54004..a5511a7f7d 100644 --- a/md/UBERON/68/UBERON_4200068.md +++ b/md/UBERON/68/UBERON_4200068.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/68/UBERON_4200168.md b/md/UBERON/68/UBERON_4200168.md index f3098e546a..88b9a7d6c9 100644 --- a/md/UBERON/68/UBERON_4200168.md +++ b/md/UBERON/68/UBERON_4200168.md @@ -24,8 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_0000069.md b/md/UBERON/69/UBERON_0000069.md index 59f044dd52..d1ed35c336 100644 --- a/md/UBERON/69/UBERON_0000069.md +++ b/md/UBERON/69/UBERON_0000069.md @@ -3,44 +3,44 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000069 * *Label* = larval stage - * *Definition* = a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva] + * *Definition* = a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva ] * *Comment* = It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses. ## Synonyms * larva stage - * ammocoete [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * ammocoete stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * bipinnaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * bipinnaria stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * caterpillar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * caterpillar stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * glochidium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * glochidium stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * grub [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * grub stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * leptocephalus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * leptocephalus stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * maggot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * maggot stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * metacestode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000859[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * naiad, nymph [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * naiad, nymph stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * nauplius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * nauplius stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * nymph [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * nymph stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * planula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * planula stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * tornaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:10219[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * trochophore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * trochophore stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * veliger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * veliger stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wriggler [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wriggler stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * zoea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * zoea stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Larva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * ammocoete [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * ammocoete stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * bipinnaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * bipinnaria stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * caterpillar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * caterpillar stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * glochidium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * glochidium stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * grub [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * grub stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * leptocephalus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * leptocephalus stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * maggot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * maggot stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * metacestode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000859, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * naiad, nymph [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * naiad, nymph stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * nauplius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * nauplius stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * nymph [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * nymph stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * planula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * planula stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * tornaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:10219, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * trochophore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * trochophore stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * veliger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * veliger stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wriggler [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wriggler stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * zoea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * zoea stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Larva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * larva ## Cross-references @@ -72,8 +72,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0000369.md b/md/UBERON/69/UBERON_0000369.md index 44ad7bd227..ef302a6969 100644 --- a/md/UBERON/69/UBERON_0000369.md +++ b/md/UBERON/69/UBERON_0000369.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000369 * *Label* = corpus striatum - * *Definition* = The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_striatum] + * *Definition* = The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_striatum ] * *Comment* = The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum ## Synonyms - * striate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001311] - * striated body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001311] + * striate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001311 ] + * striated body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001311 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A08.186.211.730.885.105.487 * NeuroNames:2339 * SCTID:279318005 - * UMLS:C0010097 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpus_Striatum] + * UMLS:C0010097 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpus_Striatum ] * VHOG:0001175 * Wikipedia:Corpus_striatum * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray656.png/200px-Gray656.png @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Thus, certain telencephalic characters - such as the presence of a pallium divided into lateral, dorsal, and medial formations and a subpallium divided into striatum and septum - appear to characterize all vertebrates. They are primitive characters and are homologous among all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010082 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0000569.md b/md/UBERON/69/UBERON_0000569.md index fb3eb24392..546ad29aca 100644 --- a/md/UBERON/69/UBERON_0000569.md +++ b/md/UBERON/69/UBERON_0000569.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000569 * *Label* = ileocecal valve - * *Definition* = The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocecal_valve] + * *Definition* = The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocecal_valve ] ## Synonyms - * valva ileocaecalis (valva ilealis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15973] - * Tulp's valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocecal_valve] - * valva ileocaecalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocecal_valve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valva ileocaecalis (valva ilealis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15973 ] + * Tulp's valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocecal_valve ] + * valva ileocaecalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocecal_valve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15973 * SCTID:362153007 - * UMLS:C0020880 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ileocecal_Valve] + * UMLS:C0020880 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ileocecal_Valve ] * Wikipedia:Ileocecal_valve * galen:IleocecalValve * http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0000969.md b/md/UBERON/69/UBERON_0000969.md index f813396be2..59d2a63e0f 100644 --- a/md/UBERON/69/UBERON_0000969.md +++ b/md/UBERON/69/UBERON_0000969.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000969 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_0001069.md b/md/UBERON/69/UBERON_0001069.md index 6b04aa289e..cec904ceea 100644 --- a/md/UBERON/69/UBERON_0001069.md +++ b/md/UBERON/69/UBERON_0001069.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001069 * *Label* = head of pancreas - * *Definition* = The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_pancreas] + * *Definition* = The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_pancreas ] ## Synonyms * pancreas head * pancreatic head * right extremity of pancreas - * caput pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Head_of_pancreas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caput pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Head_of_pancreas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:10468 * MA:0000122 * SCTID:362201006 - * UMLS:C0227579 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Pancreas] + * UMLS:C0227579 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Pancreas ] * VHOG:0000448 * Wikipedia:Head_of_pancreas * http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001169.md b/md/UBERON/69/UBERON_0001169.md index 1c9f348bd3..9f5735f9b3 100644 --- a/md/UBERON/69/UBERON_0001169.md +++ b/md/UBERON/69/UBERON_0001169.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001169 * *Label* = wall of large intestine - * *Definition* = An anatomical wall that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anatomical wall of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * large intestinal wall - * large intestine anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * large intestine anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * large intestine wall ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001269.md b/md/UBERON/69/UBERON_0001269.md index 7b98d00afa..c797a621df 100644 --- a/md/UBERON/69/UBERON_0001269.md +++ b/md/UBERON/69/UBERON_0001269.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001269 * *Label* = acetabular part of hip bone - * *Definition* = The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acetabulum] + * *Definition* = The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acetabulum ] * *Comment* = In reptiles and in birds, the acetabula are deep sockets.[WP] Note that whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface. ## Synonyms - * acetabular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000974] - * acetabulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001335] + * acetabular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000974 ] + * acetabulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001335 ] ## Cross-references @@ -23,7 +23,7 @@ * OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA * RETIRED_EHDAA2:0001427 * SCTID:182027007 - * UMLS:C0000962 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Acetabulum] + * UMLS:C0000962 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Acetabulum ] * VHOG:0000974 * Wikipedia:Acetabulum * http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cavity for the articulation of the proximal bone of the hind limb.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = During the transformation from the osteolepiform fins to tetrapod limbs, the appendages and girdles underwent a number of radical changes. The pelvic girdle became a weight-bearing structure by evolution of an ischium, a full mesio-ventral contact between the two sides of the girdle, an ilium, and a contact between the vertebral column and the girdle through a sacral rib. Fore- and hindlimbs shifted laterally by reorientation of the glenoid and the acetabulum.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001369.md b/md/UBERON/69/UBERON_0001369.md index 7d2bb2d907..4c09b944bb 100644 --- a/md/UBERON/69/UBERON_0001369.md +++ b/md/UBERON/69/UBERON_0001369.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001369 * *Label* = iliacus muscle - * *Definition* = The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliacus_muscle] + * *Definition* = The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliacus_muscle ] * *Comment* = AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow ## Synonyms * anterior muscle of pelvic girdle - * iliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002318] - * iliacus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliacus_muscle] - * musculus iliacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliacus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * iliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002318 ] + * iliacus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliacus_muscle ] + * musculus iliacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliacus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:22310 * MA:0002318 * SCTID:244956009 - * UMLS:C0224418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliacus] + * UMLS:C0224418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliacus ] * Wikipedia:Iliacus_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001469.md b/md/UBERON/69/UBERON_0001469.md index e1fcfa00f8..cb4a44f0ad 100644 --- a/md/UBERON/69/UBERON_0001469.md +++ b/md/UBERON/69/UBERON_0001469.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001469 * *Label* = sternoclavicular joint - * *Definition* = The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternoclavicular_articulation] + * *Definition* = The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternoclavicular_articulation ] ## Synonyms * sterno clavicular joint - * sternoclavicular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternoclavicular_articulation] - * sternoclavicular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternoclavicular_articulation] - * articulatio sternoclavicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternoclavicular_articulation[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sternoclavicular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternoclavicular_articulation ] + * sternoclavicular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternoclavicular_articulation ] + * articulatio sternoclavicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternoclavicular_articulation, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA * OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA * SCTID:182165002 - * UMLS:C0038291 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternoclavicular_Joint] + * UMLS:C0038291 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternoclavicular_Joint ] * Wikipedia:Sternoclavicular_articulation * http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [connects](../../ts/core#connects.md) some [sternum](../../UBERON/75/UBERON_0000975.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001569.md b/md/UBERON/69/UBERON_0001569.md index 82c80eb851..e3e520a3cd 100644 --- a/md/UBERON/69/UBERON_0001569.md +++ b/md/UBERON/69/UBERON_0001569.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001669.md b/md/UBERON/69/UBERON_0001669.md index 34ad058350..9c85172e3c 100644 --- a/md/UBERON/69/UBERON_0001669.md +++ b/md/UBERON/69/UBERON_0001669.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001669 * *Label* = superior cerebellar vein - * *Definition* = The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cerebellar_vein] + * *Definition* = The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cerebellar_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001769.md b/md/UBERON/69/UBERON_0001769.md index 1331389728..f709e1e753 100644 --- a/md/UBERON/69/UBERON_0001769.md +++ b/md/UBERON/69/UBERON_0001769.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001769 * *Label* = iris - * *Definition* = a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_(anatomy)] + * *Definition* = a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_(anatomy) ] * *Comment* = Taxon notes: The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development - dx.doi.org/10.1006/dbio.1998.9019 ## Synonyms * anterior uvea - * irises [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000101[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * irises [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000101, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,7 +26,7 @@ * OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA * SCTID:181164000 * TAO:0001238 - * UMLS:C0022077 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iris] + * UMLS:C0022077 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iris ] * VHOG:0000101 * Wikipedia:Iris_(anatomy) * XAO:0000185 @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = iridial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001869.md b/md/UBERON/69/UBERON_0001869.md index 5f600da00d..7cf8dbb1fa 100644 --- a/md/UBERON/69/UBERON_0001869.md +++ b/md/UBERON/69/UBERON_0001869.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001869 * *Label* = cerebral hemisphere - * *Definition* = One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_hemisphere] + * *Definition* = One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_hemisphere ] ## Synonyms - * Hemispheric regions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:HEM] + * Hemispheric regions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:HEM ] * cerebrum - * hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001639] - * hemispherium cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_hemisphere[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241] - * nucleus amygdaloideus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001639 ] + * hemispherium cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_hemisphere, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241 ] + * nucleus amygdaloideus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * telencephalic vesicle ## Cross-references @@ -27,11 +27,11 @@ * FMA:61817 * MA:0000133 * NIF_GrossAnatomy:birnlex_1042 - * NeuroNames:241 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1042] + * NeuroNames:241 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1042 ] * OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA * SCTID:278251007 - * UMLS:C0228174 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Hemisphere] - * UMLS:C0242202 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1042] + * UMLS:C0228174 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Hemisphere ] + * UMLS:C0242202 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1042 ] * VHOG:0001639 * Wikipedia:Cerebral_hemisphere * galen:CerebralHemisphere @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the telencephalon consisting of either of the two smooth, elongated halves of the cerebrum.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The presence of paired evaginated hemispheres and olfactory bulbs in both agnathan and gnathostome radiations suggests that such hemispheres were also present in the common ancestor.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0001969.md b/md/UBERON/69/UBERON_0001969.md index 07cf1a0a74..a0dfc7d281 100644 --- a/md/UBERON/69/UBERON_0001969.md +++ b/md/UBERON/69/UBERON_0001969.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001969 * *Label* = blood plasma - * *Definition* = Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_plasma] + * *Definition* = Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_plasma ] ## Synonyms @@ -23,7 +23,7 @@ * MESH:A12.207.152.693 * MIAA:0000052 * OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw - * UMLS:C0032105 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Plasma] + * UMLS:C0032105 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Plasma ] * Wikipedia:Blood_plasma * ncithesaurus:Plasma @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002069.md b/md/UBERON/69/UBERON_0002069.md index 11c8fb526b..f5c3d0ee42 100644 --- a/md/UBERON/69/UBERON_0002069.md +++ b/md/UBERON/69/UBERON_0002069.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002069 * *Label* = stratum granulosum of epidermis - * *Definition* = A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_granulosum] + * *Definition* = A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_granulosum ] ## Synonyms * epidermis stratum granulosum - * granular layer of epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70344] - * stratum granulosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000361] + * granular layer of epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70344 ] + * stratum granulosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000361 ] * epidermis granular layer ## Cross-references @@ -19,7 +19,7 @@ * FMA:70344 * MA:0000805 * SCTID:418563001 - * UMLS:C0221923 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Granulosum] + * UMLS:C0221923 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Granulosum ] * Wikipedia:Stratum_granulosum * ncithesaurus:Stratum_Granulosum @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002169.md b/md/UBERON/69/UBERON_0002169.md index 6542ecff24..3dbe1dc1c7 100644 --- a/md/UBERON/69/UBERON_0002169.md +++ b/md/UBERON/69/UBERON_0002169.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002169 * *Label* = alveolar sac - * *Definition* = the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010902[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_sac] + * *Definition* = the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010902, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_sac ] ## Synonyms - * pulmonary alveolar sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010902] - * sacculus alveolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7317] - * air sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010902] + * pulmonary alveolar sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010902 ] + * sacculus alveolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7317 ] + * air sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010902 ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0000418 * OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA * SCTID:361964007 - * UMLS:C0225691 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Sac] + * UMLS:C0225691 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Sac ] * Wikipedia:Alveolar_sac * ncithesaurus:Alveolar_Sac @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial sac](../../UBERON/99/UBERON_0007499.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary acinus](../../UBERON/74/UBERON_0008874.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008871 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002269.md b/md/UBERON/69/UBERON_0002269.md index ff14788306..39abdc86b9 100644 --- a/md/UBERON/69/UBERON_0002269.md +++ b/md/UBERON/69/UBERON_0002269.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002269 * *Label* = pupillary membrane - * *Definition* = The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Persistent_pupillary_membrane] + * *Definition* = The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Persistent_pupillary_membrane ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002369.md b/md/UBERON/69/UBERON_0002369.md index 331a7726fd..c23d217cc8 100644 --- a/md/UBERON/69/UBERON_0002369.md +++ b/md/UBERON/69/UBERON_0002369.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002369 * *Label* = adrenal gland - * *Definition* = Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_gland] + * *Definition* = Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_gland ] * *Comment* = Taxon notes: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole ## Synonyms - * glandula adrenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * glandula suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * adrenal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] - * adrenal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] + * glandula adrenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * glandula suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * adrenal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] + * adrenal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] * adrenal medulla cell - * atrabiliary capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] - * epinephric gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_gland] - * epinephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] - * glandula suprarenalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] - * interrenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030325[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY] - * suprarenal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000047] - * suprarenal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adrenal_gland] + * atrabiliary capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] + * epinephric gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_gland ] + * epinephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] + * glandula suprarenalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] + * interrenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030325, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY ] + * suprarenal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000047 ] + * suprarenal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adrenal_gland ] ## Cross-references @@ -37,7 +37,7 @@ * MIAA:0000071 * OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA * SCTID:181127006 - * UMLS:C0001625 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Adrenal_Gland] + * UMLS:C0001625 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Adrenal_Gland ] * VHOG:0001141 * Wikipedia:Adrenal_gland * XAO:0000164 @@ -71,8 +71,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure which is found on the surface of the kidney and secretes various hormones including epinephrine, norephinephrine, aldosterone, corticosterone, and cortisol.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All craniates have groups of cells homologous to the mammalian adrenocortical and chromaffin tissues, but they are scattered in and near the kidneys in fishes. (...) The cortical and chromaffin tissues come together to form adrenal glands in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002469.md b/md/UBERON/69/UBERON_0002469.md index 2c1230ff38..dce5079206 100644 --- a/md/UBERON/69/UBERON_0002469.md +++ b/md/UBERON/69/UBERON_0002469.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002469 * *Label* = esophagus mucosa - * *Definition* = A mucosa that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * esophageal mucosa - * esophagus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996] - * esophagus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * esophagus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * esophagus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina muscularis mucosae oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mucosa of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996 ] + * esophagus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * esophagus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * esophagus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina muscularis mucosae oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mucosa of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of esophagus - * mucous membrane of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996] - * oesophageal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996] + * mucous membrane of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996 ] + * oesophageal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996 ] * oesophagus mucosa - * oesophagus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * oesophagus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica mucosa esophagi - * tunica mucosa oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica mucosa oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tunica mucosa oesophagi - * muscularis mucosae of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62996[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * tunica mucosa oesophagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002859] + * muscularis mucosae of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62996, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * tunica mucosa oesophagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002859 ] ## Cross-references @@ -48,7 +48,7 @@ * FMA:62996 * MA:0002680 * SCTID:362127004 - * UMLS:C0227176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Mucosa] + * UMLS:C0227176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Mucosa ] * ncithesaurus:Esophageal_Mucosa ## Subsets @@ -62,7 +62,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms @@ -70,8 +70,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003345 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002569.md b/md/UBERON/69/UBERON_0002569.md index 665408d23a..0ed7013f6f 100644 --- a/md/UBERON/69/UBERON_0002569.md +++ b/md/UBERON/69/UBERON_0002569.md @@ -6,15 +6,15 @@ ## Synonyms - * sulci temporales transversi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:128[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulci temporales transversi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:128, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:tts * FMA:83782 * NIF_GrossAnatomy:birnlex_1045 - * NeuroNames:128 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1045] - * UMLS:C0228239 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1045] + * NeuroNames:128 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1045 ] + * UMLS:C0228239 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1045 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002669.md b/md/UBERON/69/UBERON_0002669.md index 04f38e0a62..88423ff873 100644 --- a/md/UBERON/69/UBERON_0002669.md +++ b/md/UBERON/69/UBERON_0002669.md @@ -6,25 +6,25 @@ ## Synonyms - * anterior branch of lateral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760] - * anterior horizontal limb of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760] - * anterior horizontal ramus of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760] - * anterior ramus of lateral cerebral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760] - * horizontal limb of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760] + * anterior branch of lateral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760 ] + * anterior horizontal limb of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760 ] + * anterior horizontal ramus of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760 ] + * anterior ramus of lateral cerebral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760 ] + * horizontal limb of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760 ] * horizontal ramus of sylvian fissure - * ramus anterior sulci lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83760[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus anterior horizontalis sulcus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:69[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus anterior sulcus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:69[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus horizontalis fissurae sylvii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:69[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus lateralis, ramus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:69[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ramus anterior sulci lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83760, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus anterior horizontalis sulcus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:69, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus anterior sulcus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:69, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus horizontalis fissurae sylvii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:69, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus lateralis, ramus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:69, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ahls * FMA:83760 * NIF_GrossAnatomy:birnlex_1327 - * NeuroNames:69 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1327] - * UMLS:C0262190 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1327] + * NeuroNames:69 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1327 ] + * UMLS:C0262190 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1327 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002769.md b/md/UBERON/69/UBERON_0002769.md index 3672bd1938..6564796159 100644 --- a/md/UBERON/69/UBERON_0002769.md +++ b/md/UBERON/69/UBERON_0002769.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002769 * *Label* = superior temporal gyrus - * *Definition* = A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_temporal_gyrus] + * *Definition* = A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_temporal_gyrus ] ## Synonyms - * gyrus temporalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1648] - * gyrus temporalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_temporal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus temporalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1648 ] + * gyrus temporalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_temporal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,9 +17,9 @@ * EFO:0001944 * FMA:61905 * NIF_GrossAnatomy:birnlex_1648 - * NeuroNames:136 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1648] + * NeuroNames:136 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1648 ] * SCTID:362345008 - * UMLS:C0152309 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1648] + * UMLS:C0152309 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1648 ] * Wikipedia:Superior_temporal_gyrus * http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Superior_temporal_gyrus.png/200px-Superior_temporal_gyrus.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002869.md b/md/UBERON/69/UBERON_0002869.md index 499cd263fd..789bd7570c 100644 --- a/md/UBERON/69/UBERON_0002869.md +++ b/md/UBERON/69/UBERON_0002869.md @@ -6,15 +6,15 @@ ## Synonyms - * Kolloker-Fuse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2641] + * Kolloker-Fuse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2641 ] * nucleus of Kolliker-Fuse - * DRt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2641[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Kolliker-Fuse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:KF] - * Kolliker-Fuse subnucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:KF] - * kvlliker-Fuse subnucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:760] - * kvlliker-Fuse subnucleus of parabrachial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:760] - * nucleus reticularis diffusus (Koelliker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:760[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticularis diffusus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:760[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * DRt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2641, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Kolliker-Fuse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:KF ] + * Kolliker-Fuse subnucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:KF ] + * kvlliker-Fuse subnucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:760 ] + * kvlliker-Fuse subnucleus of parabrachial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:760 ] + * nucleus reticularis diffusus (Koelliker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:760, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticularis diffusus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:760, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * BAMS:KF * FMA:72598 * NIF_GrossAnatomy:birnlex_2641 - * NeuroNames:760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2641] - * UMLS:C0175530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2641] + * NeuroNames:760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2641 ] + * UMLS:C0175530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2641 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0002969.md b/md/UBERON/69/UBERON_0002969.md index b6d5f16d83..06a755fa64 100644 --- a/md/UBERON/69/UBERON_0002969.md +++ b/md/UBERON/69/UBERON_0002969.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002969 * *Label* = inferior temporal sulcus - * *Definition* = The inferior surface of the temporal lobe is concave, and is continuous posteriorly with the tentorial surface of the occipital lobe. It is traversed by the inferior temporal sulcus, which extends from near the occipital pole behind, to within a short distance of the temporal pole in front, but is frequently subdivided by bridging gyri. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_temporal_sulcus] + * *Definition* = The inferior surface of the temporal lobe is concave, and is continuous posteriorly with the tentorial surface of the occipital lobe. It is traversed by the inferior temporal sulcus, which extends from near the occipital pole behind, to within a short distance of the temporal pole in front, but is frequently subdivided by bridging gyri. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_temporal_sulcus ] ## Synonyms - * inferior temporal sulcus-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83784] + * inferior temporal sulcus-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83784 ] * middle temporal sulcus (szikla) - * second temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83784] - * sulcus t2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83784] - * middle temporal fissure (Crosby) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:130] - * sulcus temporalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:130[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus temporalis medius (Roberts) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:130[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus temporalis secundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:130[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * second temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83784 ] + * sulcus t2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83784 ] + * middle temporal fissure (Crosby) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:130 ] + * sulcus temporalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:130, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus temporalis medius (Roberts) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:130, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus temporalis secundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:130, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,10 +22,10 @@ * BM:Tel-Cx-ITS * FMA:83784 * NIF_GrossAnatomy:birnlex_800 - * NeuroNames:130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_800] + * NeuroNames:130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_800 ] * SCTID:279346007 - * UMLS:C0228242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_800] - * UMLS:C0228242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Temporal_Sulcus] + * UMLS:C0228242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_800 ] + * UMLS:C0228242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Temporal_Sulcus ] * Wikipedia:Inferior_temporal_sulcus * ncithesaurus:Inferior_Temporal_Sulcus @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003069.md b/md/UBERON/69/UBERON_0003069.md index 1e33f17dbf..77d559fba4 100644 --- a/md/UBERON/69/UBERON_0003069.md +++ b/md/UBERON/69/UBERON_0003069.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003069 * *Label* = otic placode - * *Definition* = A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NBK:NBK53175[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_placode] + * *Definition* = A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII[NBK] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NBK:NBK53175, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_placode ] * *Comment* = With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175] ## Synonyms - * placoda otica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * placoda otica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * auditory placode * ear placode * ear/otic placode - * octaval VIII placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * octaval placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * octaval VIII placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * octaval placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -23,7 +23,7 @@ * EHDAA:506 * EMAPA:16195 * TAO:0000138 - * UMLS:C1518677 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Otic_Placodes] + * UMLS:C1518677 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Otic_Placodes ] * VHOG:0000235 * Wikipedia:Otic_placode * XAO:0000223 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (2) neurogenic placodes (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003169.md b/md/UBERON/69/UBERON_0003169.md index aef67f338c..b1cb75be08 100644 --- a/md/UBERON/69/UBERON_0003169.md +++ b/md/UBERON/69/UBERON_0003169.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004548 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000195 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003169 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_0003269.md b/md/UBERON/69/UBERON_0003269.md index 6d2c8d463c..e59ea56244 100644 --- a/md/UBERON/69/UBERON_0003269.md +++ b/md/UBERON/69/UBERON_0003269.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003269 * *Label* = skeletal muscle tissue of eye - * *Definition* = A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a eye [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * eye skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eye skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eye skeletal muscle group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000486] + * eye skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eye skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eye skeletal muscle group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000486 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003369.md b/md/UBERON/69/UBERON_0003369.md index 4831886556..7ca9adb145 100644 --- a/md/UBERON/69/UBERON_0003369.md +++ b/md/UBERON/69/UBERON_0003369.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003369 * *Label* = fossa ovalis of heart - * *Definition* = Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fossa_ovalis_(heart)] + * *Definition* = Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fossa_ovalis_(heart) ] ## Synonyms - * fossa ovalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9246] - * oval fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9246] + * fossa ovalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9246 ] + * oval fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9246 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003469.md b/md/UBERON/69/UBERON_0003469.md index d0369cd3b4..82ed390835 100644 --- a/md/UBERON/69/UBERON_0003469.md +++ b/md/UBERON/69/UBERON_0003469.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003469 * *Label* = respiratory system artery - * *Definition* = An artery that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An artery that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003569.md b/md/UBERON/69/UBERON_0003569.md index 5bb84a6aa0..9713600773 100644 --- a/md/UBERON/69/UBERON_0003569.md +++ b/md/UBERON/69/UBERON_0003569.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003569 * *Label* = leg connective tissue - * *Definition* = A portion of connective tissue that is part of a leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * leg portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * leg textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * leg portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * leg textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003669.md b/md/UBERON/69/UBERON_0003669.md index 0358f5c1fb..ffe9b03619 100644 --- a/md/UBERON/69/UBERON_0003669.md +++ b/md/UBERON/69/UBERON_0003669.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003669 * *Label* = fascia lata - * *Definition* = The fascia lata is the deep fascia of the thigh. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia_lata] + * *Definition* = The fascia lata is the deep fascia of the thigh. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia_lata ] ## Synonyms @@ -14,7 +14,7 @@ * GAID:117 * MESH:A02.340.424 * SCTID:361911008 - * UMLS:C0015642 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fascia_Lata] + * UMLS:C0015642 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fascia_Lata ] * Wikipedia:Fascia_lata * http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray431.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray431.png/200px-Gray431.png @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0003869.md b/md/UBERON/69/UBERON_0003869.md index 96f2518001..c1c88fd55b 100644 --- a/md/UBERON/69/UBERON_0003869.md +++ b/md/UBERON/69/UBERON_0003869.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003869 * *Label* = presumptive ganglion - * *Definition* = A presumptive structure that has_potential_to_develop_into a ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [ganglion](../../UBERON/45/UBERON_0000045.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004069.md b/md/UBERON/69/UBERON_0004069.md index d81933ba81..39a4662143 100644 --- a/md/UBERON/69/UBERON_0004069.md +++ b/md/UBERON/69/UBERON_0004069.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004069 * *Label* = accessory olfactory bulb - * *Definition* = the forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009945[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb] + * *Definition* = the forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009945, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb ] * *Comment* = Site of termination of vomeronasal nerve; projects to: other parts of pallial amygdala, medial amygdala, subpallial nucleus (Butler and Hodos) ## Synonyms - * olfactory bulb accessory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090453] - * accessory olfactory formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000966] + * olfactory bulb accessory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090453 ] + * accessory olfactory formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000966 ] ## Cross-references @@ -29,7 +29,7 @@ * [regional part of telencephalon](../../UBERON/91/UBERON_0002791.md) * [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [vomeronasal nerve](../../UBERON/21/UBERON_0009121.md) ## Equivalencies @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004269.md b/md/UBERON/69/UBERON_0004269.md index e115209f4a..64c0043e9b 100644 --- a/md/UBERON/69/UBERON_0004269.md +++ b/md/UBERON/69/UBERON_0004269.md @@ -3,57 +3,57 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004269 * *Label* = upper arm connective tissue - * *Definition* = A portion of connective tissue that is part of a forelimb stylopod [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a forelimb stylopod [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of Proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of stylopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of Proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of stylopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb stylopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb stylopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb stylopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of Proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of stylopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of upper arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of Proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of stylopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of Proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of stylopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb stylopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb stylopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb stylopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of Proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of stylopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of upper arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -69,15 +69,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004369.md b/md/UBERON/69/UBERON_0004369.md index 0cf47768c6..c48130c5ab 100644 --- a/md/UBERON/69/UBERON_0004369.md +++ b/md/UBERON/69/UBERON_0004369.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004369 * *Label* = Reichert's membrane - * *Definition* = An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1007/BF00184752[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003954] + * *Definition* = An nonvascular extraembryonic basement membrane that forms on the inner surface of the trophectoderm during placenta morphogenesis and is secreted by the distal parietal endoderm; required for the maternofetal exchange of nutrients and is important for the postgastrulation development[MP]. a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1007/BF00184752, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003954 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004469.md b/md/UBERON/69/UBERON_0004469.md index 606915a76c..2046220c42 100644 --- a/md/UBERON/69/UBERON_0004469.md +++ b/md/UBERON/69/UBERON_0004469.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004469 * *Label* = musculature of back - * *Definition* = Any collection of muscles that is part of a back [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a back [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71291] - * muscles of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71291] - * musculi dorsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71291[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of muscles of back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71291] + * muscle group of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71291 ] + * muscles of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71291 ] + * musculi dorsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71291, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of muscles of back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71291 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004769.md b/md/UBERON/69/UBERON_0004769.md index a41dd9760f..4c4de13049 100644 --- a/md/UBERON/69/UBERON_0004769.md +++ b/md/UBERON/69/UBERON_0004769.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004769 * *Label* = diaphysis - * *Definition* = Subdivision of long bone which forms the part of the bone between the two epiphyses, excluding the metaphyses[FMA,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24013[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Diaphysis] + * *Definition* = Subdivision of long bone which forms the part of the bone between the two epiphyses, excluding the metaphyses[FMA,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24013, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Diaphysis ] ## Synonyms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur[FMA]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The main or mid section (shaft) of a long bone. It is made up of cortical bone and usually contains bone marrow and adipose tissue (fat)[WP][FMA:24013, Wikipedia:Diaphysis]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0004869.md b/md/UBERON/69/UBERON_0004869.md index 725ccb941d..65e21f9489 100644 --- a/md/UBERON/69/UBERON_0004869.md +++ b/md/UBERON/69/UBERON_0004869.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004869 * *Label* = parietal organ - * *Definition* = A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_eye] + * *Definition* = A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_eye ] ## Synonyms - * parietal eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_eye] - * third eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_eye] + * parietal eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_eye ] + * third eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_eye ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005069.md b/md/UBERON/69/UBERON_0005069.md index 736dffa60e..5978f04ca5 100644 --- a/md/UBERON/69/UBERON_0005069.md +++ b/md/UBERON/69/UBERON_0005069.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005069 * *Label* = neural fold hinge point - * *Definition* = The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021504] + * *Definition* = The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021504 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005169.md b/md/UBERON/69/UBERON_0005169.md index 64ff76b53e..b37d340e2b 100644 --- a/md/UBERON/69/UBERON_0005169.md +++ b/md/UBERON/69/UBERON_0005169.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005169 * *Label* = interstitial tissue - * *Definition* = connective tissue between the cellular elements of a structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/tissue] + * *Definition* = connective tissue between the cellular elements of a structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/tissue ] * *Comment* = Editors note: specify differentia from stroma ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = interstital - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005269.md b/md/UBERON/69/UBERON_0005269.md index a5b780fdcd..703b496c64 100644 --- a/md/UBERON/69/UBERON_0005269.md +++ b/md/UBERON/69/UBERON_0005269.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005269 * *Label* = renal cortex vein - * *Definition* = Artery that receives blood from the renal cortex[MP, modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith] + * *Definition* = Artery that receives blood from the renal cortex[MP, modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith ] ## Synonyms - * kidney cortex vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011322] - * renal cortex venous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002592] + * kidney cortex vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011322 ] + * renal cortex venous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002592 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005469.md b/md/UBERON/69/UBERON_0005469.md index 67715833dc..f81df13e5a 100644 --- a/md/UBERON/69/UBERON_0005469.md +++ b/md/UBERON/69/UBERON_0005469.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005469 * *Label* = right thymus lobe - * *Definition* = A thymus lobe that is in the right side of a thymus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A thymus lobe that is in the right side of a thymus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right lobe of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71194] - * right thymic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71194] + * right lobe of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71194 ] + * right thymic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71194 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [thymus](../../UBERON/70/UBERON_0002370.md) and [thymus lobe](../../UBERON/83/UBERON_0005483.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005569.md b/md/UBERON/69/UBERON_0005569.md index 9934a3ffa1..80e133f472 100644 --- a/md/UBERON/69/UBERON_0005569.md +++ b/md/UBERON/69/UBERON_0005569.md @@ -6,7 +6,7 @@ ## Synonyms - * r2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000822] + * r2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000822 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 3 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005669.md b/md/UBERON/69/UBERON_0005669.md index 320a7990c8..8b6bf62a24 100644 --- a/md/UBERON/69/UBERON_0005669.md +++ b/md/UBERON/69/UBERON_0005669.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005669 * *Label* = peritoneal cavity mesothelium - * *Definition* = A mesothelium that is part of a peritoneal cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a peritoneal cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesothelium of peritoneal component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16139] - * mesothelium of peritoneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18147] - * peritoneal mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003156] - * peritoneum mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18147] + * mesothelium of peritoneal component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16139 ] + * mesothelium of peritoneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18147 ] + * peritoneal mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003156 ] + * peritoneum mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18147 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [peritoneal cavity](../../UBERON/79/UBERON_0001179.md) and [mesothelium](../../UBERON/36/UBERON_0001136.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005769.md b/md/UBERON/69/UBERON_0005769.md index 8d5767c8ac..74e82187d1 100644 --- a/md/UBERON/69/UBERON_0005769.md +++ b/md/UBERON/69/UBERON_0005769.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005769 * *Label* = basement membrane of epithelium - * *Definition* = An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basement_membrane] + * *Definition* = An acellular membrane that is part of the epithelium, lies adjacent to the epithelial cells, and is the fusion of the the basal lamina and the reticular lamina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basement_membrane ] * *Comment* = This class represents a continuous sheet of basement membrane which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal membrane' represents a portion of substance on the scale of a single cell. ## Synonyms - * basement membrane of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63872] - * membrana basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basement_membrane[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63872] + * basement membrane of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63872 ] + * membrana basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basement_membrane, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63872 ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:63872 * GAID:915 * SCTID:68989006 - * UMLS:C0004799 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basement_Membrane] + * UMLS:C0004799 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basement_Membrane ] * Wikipedia:Basement_membrane * ncithesaurus:Basement_Membrane @@ -43,8 +43,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_80999 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005869.md b/md/UBERON/69/UBERON_0005869.md index 24645b5732..0ace43d7ce 100644 --- a/md/UBERON/69/UBERON_0005869.md +++ b/md/UBERON/69/UBERON_0005869.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005869 * *Label* = maxillary process of inferior nasal concha - * *Definition* = From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_process_of_inferior_nasal_concha] + * *Definition* = From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_process_of_inferior_nasal_concha ] ## Synonyms - * maxillary process of inferior concha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54741] - * maxillary process of inferior nasal turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54741] - * maxillary process of inferior turbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54741] - * processus maxillaris (concha nasalis inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54741] - * processus maxillaris conchae nasalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54741[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * maxilloturbinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + palaeos.com/vertebrates/bones/braincase/ethmoid.html] - * p. maxillaris conchae nasalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_process_of_inferior_nasal_concha[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * maxillary process of inferior concha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54741 ] + * maxillary process of inferior nasal turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54741 ] + * maxillary process of inferior turbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54741 ] + * processus maxillaris (concha nasalis inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54741 ] + * processus maxillaris conchae nasalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54741, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * maxilloturbinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = palaeos.com/vertebrates/bones/braincase/ethmoid.html ] + * p. maxillaris conchae nasalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_process_of_inferior_nasal_concha, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0005969.md b/md/UBERON/69/UBERON_0005969.md index 00801217a4..f3653f01a6 100644 --- a/md/UBERON/69/UBERON_0005969.md +++ b/md/UBERON/69/UBERON_0005969.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005969 * *Label* = reticulum trabeculare - * *Definition* = a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris[GO]. The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002930[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005203[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] + * *Definition* = a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris[GO]. The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002930, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005203, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] * *Comment* = TODO check syns - ligaments ## Synonyms - * trabecular meshwork of the eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * Hueck's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001605] - * cribiform ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * iridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * ligamentum peactin-tum iridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * ligamentum pectinatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * ligamentum pectinatum anguli iridocornealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001605] - * ligamentum pectinatum iridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * pectinate ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001605] - * pectinate ligament of iris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001605] - * reticulum trabeculare sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * scleral trabeculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * scleral trabecular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * scleral trabecule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * scribiform ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * trabecular mesh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_meshwork] - * trabecular meshwork [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001605[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0002930] + * trabecular meshwork of the eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * Hueck's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001605 ] + * cribiform ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * iridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * ligamentum peactin-tum iridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * ligamentum pectinatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * ligamentum pectinatum anguli iridocornealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001605 ] + * ligamentum pectinatum iridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * pectinate ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001605 ] + * pectinate ligament of iris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001605 ] + * reticulum trabeculare sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * scleral trabeculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * scleral trabecular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * scleral trabecule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * scribiform ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * trabecular mesh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_meshwork ] + * trabecular meshwork [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001605, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0002930 ] ## Cross-references @@ -35,7 +35,7 @@ * GAID:897 * MESH:A09.371.060.932 * SCTID:280694002 - * UMLS:C0040573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trabecular_Meshwork] + * UMLS:C0040573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trabecular_Meshwork ] * Wikipedia:Trabecular_meshwork * http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png * ncithesaurus:Trabecular_Meshwork @@ -51,7 +51,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) * [part_of](../../BFO/50/BFO_0000050.md) some [aqueous drainage system](../../UBERON/56/UBERON_0003956.md) * [has_part](../../BFO/51/BFO_0000051.md) some [trabecular meshwork cell](../../CL/67/CL_0002367.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [iridocorneal angle](../../UBERON/06/UBERON_0006206.md) * [surrounds](../../RO/21/RO_0002221.md) some [anterior chamber of eyeball](../../UBERON/66/UBERON_0001766.md) ## Equivalencies @@ -63,8 +63,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004028 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006169.md b/md/UBERON/69/UBERON_0006169.md index e72ab8798a..1ec0c1d5e6 100644 --- a/md/UBERON/69/UBERON_0006169.md +++ b/md/UBERON/69/UBERON_0006169.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006269.md b/md/UBERON/69/UBERON_0006269.md index 321e5149b9..fe4060a228 100644 --- a/md/UBERON/69/UBERON_0006269.md +++ b/md/UBERON/69/UBERON_0006269.md @@ -34,8 +34,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An aperture in the root of the lesser wing of the sphenoid bone transmitting the optic nerve. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006469.md b/md/UBERON/69/UBERON_0006469.md index 76511064be..414bf4b8be 100644 --- a/md/UBERON/69/UBERON_0006469.md +++ b/md/UBERON/69/UBERON_0006469.md @@ -6,16 +6,16 @@ ## Synonyms - * C1 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71179] - * C1 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1694] - * first cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1694] + * C1 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71179 ] + * C1 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1694 ] + * first cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1694 ] ## Cross-references * FMA:71179 * NIF_GrossAnatomy:birnlex_1694 * SCTID:278754000 - * UMLS:C0457851 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1694] + * UMLS:C0457851 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1694 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006569.md b/md/UBERON/69/UBERON_0006569.md index 1fdd6522b1..2af6c768e0 100644 --- a/md/UBERON/69/UBERON_0006569.md +++ b/md/UBERON/69/UBERON_0006569.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006569 * *Label* = diencephalic nucleus - * *Definition* = A nucleus of brain that is part of a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006669.md b/md/UBERON/69/UBERON_0006669.md index 6a7f18a8e8..d1b6bdefec 100644 --- a/md/UBERON/69/UBERON_0006669.md +++ b/md/UBERON/69/UBERON_0006669.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006669 * *Label* = alveolar canal - * *Definition* = The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_canals] + * *Definition* = The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_canals ] ## Synonyms - * canales alveolares maxillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_canals[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canales alveolares maxillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_canals, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006869.md b/md/UBERON/69/UBERON_0006869.md index 33034e531b..0b6e542040 100644 --- a/md/UBERON/69/UBERON_0006869.md +++ b/md/UBERON/69/UBERON_0006869.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006869 * *Label* = electric organ - * *Definition* = A specialized tract of tissue (as in the electric eel) in which electricity is generated. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000376[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Electric_organ] + * *Definition* = A specialized tract of tissue (as in the electric eel) in which electricity is generated. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000376, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Electric_organ ] * *Comment* = todo - request go term for function assignment; todo - add CL term for electrocyte // modified muscle or nerve cells, which became specialized for producing bioelectric fields stronger than those that normal nerves or muscles produce (Albert and Crampton, 2006) ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ that is used to produce an electric field, i.e. an electric organ discharge (EOD).[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0006969.md b/md/UBERON/69/UBERON_0006969.md index c9e592f2e0..2aa806ed8d 100644 --- a/md/UBERON/69/UBERON_0006969.md +++ b/md/UBERON/69/UBERON_0006969.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006969 * *Label* = cranial appendage - * *Definition* = An anatomical projection that is part of and protrudes from the head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An anatomical projection that is part of and protrudes from the head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Editor notes: revisit after CARO2 appendage issue is sorted. Note that antennae are appendages that protrude from the head ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0007169.md b/md/UBERON/69/UBERON_0007169.md index 792dd4c7f4..1707eb65aa 100644 --- a/md/UBERON/69/UBERON_0007169.md +++ b/md/UBERON/69/UBERON_0007169.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007169 * *Label* = short head of biceps brachii - * *Definition* = Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_brachii_muscle#Origin_and_insertion] + * *Definition* = Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_brachii_muscle#Origin_and_insertion ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0007269.md b/md/UBERON/69/UBERON_0007269.md index 4026a90852..2758c73815 100644 --- a/md/UBERON/69/UBERON_0007269.md +++ b/md/UBERON/69/UBERON_0007269.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007269 * *Label* = pectoral appendage musculature - * *Definition* = Any collection of muscles that is part of a pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pectoral fin musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000563[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pectoral fin musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000563, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0007769.md b/md/UBERON/69/UBERON_0007769.md index 805dfc8dce..5e09a1669e 100644 --- a/md/UBERON/69/UBERON_0007769.md +++ b/md/UBERON/69/UBERON_0007769.md @@ -6,8 +6,8 @@ ## Synonyms - * medial preoptic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:MPO] - * medial preopticarea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MPO] + * medial preoptic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:MPO ] + * medial preopticarea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MPO ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0008269.md b/md/UBERON/69/UBERON_0008269.md index 449dacde29..d0b8122312 100644 --- a/md/UBERON/69/UBERON_0008269.md +++ b/md/UBERON/69/UBERON_0008269.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008269 * *Label* = nacre - * *Definition* = an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 m wide and 0.5 m thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nacre] + * *Definition* = an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 m wide and 0.5 m thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nacre ] ## Synonyms - * mother of pearl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nacre] + * mother of pearl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nacre ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0008969.md b/md/UBERON/69/UBERON_0008969.md index 0bb51cc677..c4c62dff15 100644 --- a/md/UBERON/69/UBERON_0008969.md +++ b/md/UBERON/69/UBERON_0008969.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008969 * *Label* = dental follicle - * *Definition* = The dental follicle is a sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_follicle] + * *Definition* = The dental follicle is a sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_follicle ] ## Synonyms - * tooth follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000337] + * tooth follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000337 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0009569.md b/md/UBERON/69/UBERON_0009569.md index c88a308c94..7ee81feec2 100644 --- a/md/UBERON/69/UBERON_0009569.md +++ b/md/UBERON/69/UBERON_0009569.md @@ -6,8 +6,8 @@ ## Synonyms - * region of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25054] - * trunk subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25054] + * region of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25054 ] + * trunk subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25054 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0009669.md b/md/UBERON/69/UBERON_0009669.md index 0e45b1a316..39ceb79ae9 100644 --- a/md/UBERON/69/UBERON_0009669.md +++ b/md/UBERON/69/UBERON_0009669.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009669 * *Label* = embryonic cloacal lumen - * *Definition* = An anatomical space that surrounded_by a embryonic cloaca. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a embryonic cloaca. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [embryonic cloaca](../../UBERON/63/UBERON_0000163.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0009769.md b/md/UBERON/69/UBERON_0009769.md index b3be87382c..f1994b665e 100644 --- a/md/UBERON/69/UBERON_0009769.md +++ b/md/UBERON/69/UBERON_0009769.md @@ -7,7 +7,7 @@ ## Synonyms - * common cardinal vein left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000304] + * common cardinal vein left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000304 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0009869.md b/md/UBERON/69/UBERON_0009869.md index 3f54f22943..c44c618c05 100644 --- a/md/UBERON/69/UBERON_0009869.md +++ b/md/UBERON/69/UBERON_0009869.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009869 * *Label* = Hatschek's right diverticulum - * *Definition* = A Hatschek's diverticulum that is in the right side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A Hatschek's diverticulum that is in the right side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [Hatschek's diverticulum](../../UBERON/67/UBERON_0009867.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0009969.md b/md/UBERON/69/UBERON_0009969.md index fc264926bb..817ab55f3b 100644 --- a/md/UBERON/69/UBERON_0009969.md +++ b/md/UBERON/69/UBERON_0009969.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010069.md b/md/UBERON/69/UBERON_0010069.md index 16bb82c93e..2ec8378c7c 100644 --- a/md/UBERON/69/UBERON_0010069.md +++ b/md/UBERON/69/UBERON_0010069.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010069 * *Label* = outer epithelial layer of tympanic membrane - * *Definition* = A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * cuticular layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56819] - * cuticular stratum of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56819] - * outer cuticular layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56819] + * cuticular layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56819 ] + * cuticular stratum of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56819 ] + * outer cuticular layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56819 ] * outer layer of tympanic membrane - * tympanic membrane external acoustic meatus epithelial component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * tympanic membrane external acoustic meatus epithelial component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [external acoustic meatus](../../UBERON/52/UBERON_0001352.md) and [tympanic membrane epithelium](../../UBERON/47/UBERON_0009647.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010169.md b/md/UBERON/69/UBERON_0010169.md index 3a85c0250c..415865847a 100644 --- a/md/UBERON/69/UBERON_0010169.md +++ b/md/UBERON/69/UBERON_0010169.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010169 * *Label* = moustache - * *Definition* = facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Moustache] + * *Definition* = facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Moustache ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010269.md b/md/UBERON/69/UBERON_0010269.md index 51587cf335..fd00d9a005 100644 --- a/md/UBERON/69/UBERON_0010269.md +++ b/md/UBERON/69/UBERON_0010269.md @@ -6,7 +6,7 @@ ## Synonyms - * internal part of filum terminale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256524] + * internal part of filum terminale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256524 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010369.md b/md/UBERON/69/UBERON_0010369.md index 267e04810f..6d4585c782 100644 --- a/md/UBERON/69/UBERON_0010369.md +++ b/md/UBERON/69/UBERON_0010369.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010369 * *Label* = secondary pulmonary lobule - * *Definition* = a unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:3259815] + * *Definition* = a unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:3259815 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010569.md b/md/UBERON/69/UBERON_0010569.md index fa481c3358..0919c2abda 100644 --- a/md/UBERON/69/UBERON_0010569.md +++ b/md/UBERON/69/UBERON_0010569.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010569 * *Label* = manual digit 5 metacarpus pre-cartilage condensation - * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus pre-cartilage condensation that is part of a manual digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 5 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000539] - * fore limb digit 5 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 5 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000539 ] + * fore limb digit 5 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal 5 pre-cartilage condensation - * hand digit 5 metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 5 metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus pre-cartilage condensation](../../UBERON/98/UBERON_0010698.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5 mesenchyme](../../UBERON/95/UBERON_0005695.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0010869.md b/md/UBERON/69/UBERON_0010869.md index 1d0b7c1d78..55610abd18 100644 --- a/md/UBERON/69/UBERON_0010869.md +++ b/md/UBERON/69/UBERON_0010869.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010869 * *Label* = calcar - * *Definition* = a spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcar] + * *Definition* = a spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcar ] * *Comment* = Function notes: to help spread the interfemoral membrane which is part of the wing membrane between the tail and the hind legs. ## Synonyms * calcar spur - * calcaneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcar[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * calcaneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcar, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011169.md b/md/UBERON/69/UBERON_0011169.md index 8e171a1696..2e9105161d 100644 --- a/md/UBERON/69/UBERON_0011169.md +++ b/md/UBERON/69/UBERON_0011169.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011169 * *Label* = postorbital bone - * *Definition* = The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postorbital_bone] + * *Definition* = The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postorbital_bone ] ## Synonyms @@ -22,7 +22,7 @@ * [dermal bone](../../UBERON/07/UBERON_0008907.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Equivalencies @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011369.md b/md/UBERON/69/UBERON_0011369.md index ed4ab9fbd9..08332ab50d 100644 --- a/md/UBERON/69/UBERON_0011369.md +++ b/md/UBERON/69/UBERON_0011369.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011369 * *Label* = omotransversarius muscle - * *Definition* = The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1433] + * *Definition* = The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1433 ] ## Synonyms - * omotransverse [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002349] + * omotransverse [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002349 ] * omotransverse muscle ## Cross-references * MA:0002349 - * UMLS:C1709311 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Omotransverse] + * UMLS:C1709311 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Omotransverse ] * ncithesaurus:Omotransverse ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [scapula spine](../../UBERON/51/UBERON_0004651.md) and [attaches_to](../../RO/71/RO_0002371.md) some [transverse process of atlas](../../UBERON/70/UBERON_0011370.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011669.md b/md/UBERON/69/UBERON_0011669.md index 9252b10a24..0088b0fb9a 100644 --- a/md/UBERON/69/UBERON_0011669.md +++ b/md/UBERON/69/UBERON_0011669.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011669 * *Label* = neural plate of carapace - * *Definition* = One of a series of plates on the dorsal midline of the turtle shell, posterior to the nuchal bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = One of a series of plates on the dorsal midline of the turtle shell, posterior to the nuchal bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = In many species of Pleurodire they are submerged below the pleurals[WP] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011669 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011769.md b/md/UBERON/69/UBERON_0011769.md index 33d8ffb5de..5d0fa57271 100644 --- a/md/UBERON/69/UBERON_0011769.md +++ b/md/UBERON/69/UBERON_0011769.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011769 * *Label* = cartilaginous projection - * *Definition* = Anatomical projection that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:wd] + * *Definition* = Anatomical projection that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:wd ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical projection](../../UBERON/29/UBERON_0004529.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011869.md b/md/UBERON/69/UBERON_0011869.md index 5fe28a47a9..302f3ec2b8 100644 --- a/md/UBERON/69/UBERON_0011869.md +++ b/md/UBERON/69/UBERON_0011869.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011869 * *Label* = pisiform joint - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pisiform_joint] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pisiform_joint ] * *Comment* = Wikipedia says pisiform and triquetral- todo check pisotriquetral ## Synonyms - * articulatio ossis pisiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pisiform_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio ossis pisiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pisiform_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [pisiform](../../UBERON/29/UBERON_0001429.md) and [connects](../../ts/core#connects.md) some [ulnare](../../UBERON/45/UBERON_0002445.md) and [intercarpal joint](../../UBERON/32/UBERON_0011132.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011869 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0011969.md b/md/UBERON/69/UBERON_0011969.md index cf60082e33..c4881631b3 100644 --- a/md/UBERON/69/UBERON_0011969.md +++ b/md/UBERON/69/UBERON_0011969.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011969 * *Label* = mesotarsal joint - * *Definition* = An ankle joint that passes between the proximal and distal tarsals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryM.html] + * *Definition* = An ankle joint that passes between the proximal and distal tarsals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryM.html ] * *Comment* = Calcaneus and astragalus are interlocked, line of flexion is distal to them[Kardong] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal tarsal bone](../../UBERON/21/UBERON_0010721.md) and [connects](../../ts/core#connects.md) some [proximal tarsal bone](../../UBERON/79/UBERON_0011679.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011969 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0012069.md b/md/UBERON/69/UBERON_0012069.md index f91f2d2dd8..c3397bfc86 100644 --- a/md/UBERON/69/UBERON_0012069.md +++ b/md/UBERON/69/UBERON_0012069.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0012269.md b/md/UBERON/69/UBERON_0012269.md index 302bcefa7b..234c5b5c4e 100644 --- a/md/UBERON/69/UBERON_0012269.md +++ b/md/UBERON/69/UBERON_0012269.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012269 * *Label* = equine hindlimb splint bone - * *Definition* = A splint bone in the metatarsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A splint bone in the metatarsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In future this class may be replaced by a more taxon-neutral class grouping metacarpal bones 2 or 4 ## Synonyms - * hindlimb splint bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788] + * hindlimb splint bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788 ] * metatarsal bone 2 or 4 ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [equine splint bone](../../UBERON/67/UBERON_0012267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0012369.md b/md/UBERON/69/UBERON_0012369.md index a2d551a33c..cc94ae50f6 100644 --- a/md/UBERON/69/UBERON_0012369.md +++ b/md/UBERON/69/UBERON_0012369.md @@ -6,9 +6,9 @@ ## Synonyms - * longitudinal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005214] - * outer muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62900] - * outer muscularis layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62900] + * longitudinal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005214 ] + * outer muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62900 ] + * outer muscularis layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62900 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012369 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0012469.md b/md/UBERON/69/UBERON_0012469.md index a6ac4a1c27..119beeae89 100644 --- a/md/UBERON/69/UBERON_0012469.md +++ b/md/UBERON/69/UBERON_0012469.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0013069.md b/md/UBERON/69/UBERON_0013069.md index 849c9171ae..2b47c20e81 100644 --- a/md/UBERON/69/UBERON_0013069.md +++ b/md/UBERON/69/UBERON_0013069.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013069 * *Label* = popliteal area - * *Definition* = The popliteal fossa is a space or shallow depression located at the back of the knee-joint. The bones of the popliteal fossa are the femur and the tibia. Colloquially, it is referred to as a 'knee pit.' [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteal_fossa] + * *Definition* = The popliteal fossa is a space or shallow depression located at the back of the knee-joint. The bones of the popliteal fossa are the femur and the tibia. Colloquially, it is referred to as a 'knee pit.' [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteal_fossa ] * *Comment* = a depression on the ventral side of the femur, between the condyles, presumably related in some fashion to the popliteal nerve and/or artery.[Palaeos] ## Synonyms - * popliteal fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22525] + * popliteal fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22525 ] * popliteal region * popliteal space @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0013169.md b/md/UBERON/69/UBERON_0013169.md index 06c709a96a..4646d24f16 100644 --- a/md/UBERON/69/UBERON_0013169.md +++ b/md/UBERON/69/UBERON_0013169.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013169 * *Label* = vestibular ligament - * *Definition* = The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2193[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_ligament] + * *Definition* = The vestibular fold is a fibroelastic band which passes from the ventral margin of the cuneiform cartilage to the cranial dorsal surface of the thyroid cartilage. It forms the support for the free edge of the vestibular fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2193, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_ligament ] ## Synonyms - * ligamentum vestibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventricular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_ligament] + * ligamentum vestibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventricular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_ligament ] * vestibular ligament of larynx ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [cuneiform cartilage](../../UBERON/57/UBERON_0011157.md) and [connects](../../ts/core#connects.md) some [thyroid cartilage](../../UBERON/38/UBERON_0001738.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0013469.md b/md/UBERON/69/UBERON_0013469.md index cef39cf148..463cf644b6 100644 --- a/md/UBERON/69/UBERON_0013469.md +++ b/md/UBERON/69/UBERON_0013469.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013469 * *Label* = external occipital protuberance - * *Definition* = Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_occipital_protuberance] + * *Definition* = Near the middle of the occipital squama is the external occipital protuberance, and extending lateralward from it on either side is the superior nuchal line, and above this the faintly marked highest nuchal line. It is less pronounced in females. The inion is the highest point of the external occipital protuberance. a projection on the external surface of the squamous part of the occipital bone in the midline [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_occipital_protuberance ] ## Synonyms - * inion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inion] + * inion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inion ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external occipital protuberance is a bony prominence occuring on the large area ventral to the external sagittal crest. It functions as the attachment site for the funicular part of the nuchal ligament[MURDOCH:734]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013469 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0013769.md b/md/UBERON/69/UBERON_0013769.md index 5a7c0a09f8..4c8821d6a1 100644 --- a/md/UBERON/69/UBERON_0013769.md +++ b/md/UBERON/69/UBERON_0013769.md @@ -6,8 +6,8 @@ ## Synonyms - * cavity of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17745] - * uterine cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17745] + * cavity of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17745 ] + * uterine cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17745 ] * uterine space ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ cavity](../../UBERON/58/UBERON_0002558.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0014169.md b/md/UBERON/69/UBERON_0014169.md index d0e3e826af..1532ac4d13 100644 --- a/md/UBERON/69/UBERON_0014169.md +++ b/md/UBERON/69/UBERON_0014169.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014169 * *Label* = nigrostriatal tract - * *Definition* = The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] + * *Definition* = The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] ## Synonyms - * comb bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nigrostriatal bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nigrostriatal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nigrostriatal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * comb bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nigrostriatal bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nigrostriatal fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4107] - * nucleus caudalis centralis oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus centralis nervi oculomotorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tegmentum mesencephalicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:491[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * comb bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nigrostriatal bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nigrostriatal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nigrostriatal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * comb bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nigrostriatal bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nigrostriatal fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4107 ] + * nucleus caudalis centralis oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus centralis nervi oculomotorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tegmentum mesencephalicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:491, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,8 +24,8 @@ * BAMS:nst * NIF_GrossAnatomy:birnlex_4107 * NeuroNames:491 - * NeuroNames:500 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4107] - * UMLS:C0815010 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4107] + * NeuroNames:500 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4107 ] + * UMLS:C0815010 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4107 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014169 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0014569.md b/md/UBERON/69/UBERON_0014569.md index fe4b925c4d..9fc006ea30 100644 --- a/md/UBERON/69/UBERON_0014569.md +++ b/md/UBERON/69/UBERON_0014569.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014569 * *Label* = dorsal tegmental nucleus pars ventralis - * *Definition* = Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090408] + * *Definition* = Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090408 ] * *Comment* = According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human ## Synonyms - * dorsal tegmental nucleus pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090408] - * dorsal tegmental nucleus of gudden pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090408] - * pars ventralis of the dorsal tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090408] - * pars ventralis of the dorsal tegmental nucleus of gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090408] + * dorsal tegmental nucleus pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090408 ] + * dorsal tegmental nucleus of gudden pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090408 ] + * pars ventralis of the dorsal tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090408 ] + * pars ventralis of the dorsal tegmental nucleus of gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090408 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014569 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0014769.md b/md/UBERON/69/UBERON_0014769.md index 9bd23cfa36..ed1ac12748 100644 --- a/md/UBERON/69/UBERON_0014769.md +++ b/md/UBERON/69/UBERON_0014769.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014769 * *Label* = palpebral vein - * *Definition* = A blood vessel that drains from from an eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A blood vessel that drains from from an eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * palpebral veins [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * venae palpebrales [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palpebral veins [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * venae palpebrales [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014769 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_0015069.md b/md/UBERON/69/UBERON_0015069.md index e7f157e7a9..bac6773d87 100644 --- a/md/UBERON/69/UBERON_0015069.md +++ b/md/UBERON/69/UBERON_0015069.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal endochondral element](../../UBERON/68/UBERON_0015068.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015069 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2000269.md b/md/UBERON/69/UBERON_2000269.md index d3755a39e2..912fec1f58 100644 --- a/md/UBERON/69/UBERON_2000269.md +++ b/md/UBERON/69/UBERON_2000269.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2000469.md b/md/UBERON/69/UBERON_2000469.md index 8f2b01a356..0d1c93bc3d 100644 --- a/md/UBERON/69/UBERON_2000469.md +++ b/md/UBERON/69/UBERON_2000469.md @@ -6,7 +6,7 @@ ## Synonyms - * anterior semicircular canal primordia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000469[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * anterior semicircular canal primordia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000469, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2000769.md b/md/UBERON/69/UBERON_2000769.md index 1f191b8b59..b6e771632b 100644 --- a/md/UBERON/69/UBERON_2000769.md +++ b/md/UBERON/69/UBERON_2000769.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000769 * *Label* = hypaxial region somite 17 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2000869.md b/md/UBERON/69/UBERON_2000869.md index 1dd84ae26c..3727eebbb7 100644 --- a/md/UBERON/69/UBERON_2000869.md +++ b/md/UBERON/69/UBERON_2000869.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000869 * *Label* = epaxial region somite 23 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2000969.md b/md/UBERON/69/UBERON_2000969.md index 760edfa82c..57702b275b 100644 --- a/md/UBERON/69/UBERON_2000969.md +++ b/md/UBERON/69/UBERON_2000969.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 23 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000969[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 23 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000969, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_2001069.md b/md/UBERON/69/UBERON_2001069.md index 54bbc78290..ae77f05e2b 100644 --- a/md/UBERON/69/UBERON_2001069.md +++ b/md/UBERON/69/UBERON_2001069.md @@ -6,12 +6,12 @@ ## Synonyms - * anal fin fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] - * anal fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] - * tail fin fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] - * tail fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] - * ventral fin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] - * ventral fin-fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001069] + * anal fin fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] + * anal fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] + * tail fin fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] + * tail fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] + * ventral fin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] + * ventral fin-fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001069 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2001169.md b/md/UBERON/69/UBERON_2001169.md index 301a391550..7431eff23a 100644 --- a/md/UBERON/69/UBERON_2001169.md +++ b/md/UBERON/69/UBERON_2001169.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001169 * *Label* = vertebral element 3 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 3 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2001269.md b/md/UBERON/69/UBERON_2001269.md index c6f83b4d45..f218559ab6 100644 --- a/md/UBERON/69/UBERON_2001269.md +++ b/md/UBERON/69/UBERON_2001269.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001269 * *Label* = regenerating fin/limb - * *Definition* = Fin or limb undergoing the process of regeneration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Fin or limb undergoing the process of regeneration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * regenerating fins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001269[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * regenerating fins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001269, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [paired limb/fin](../../UBERON/08/UBERON_0004708.md) and [participates in](../../BFO/56/BFO_0000056.md) some [regeneration](../../GO/99/GO_0031099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001269 + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2001569.md b/md/UBERON/69/UBERON_2001569.md index 5372ad9b92..2f2a0f8a55 100644 --- a/md/UBERON/69/UBERON_2001569.md +++ b/md/UBERON/69/UBERON_2001569.md @@ -6,8 +6,8 @@ ## Synonyms - * mature egg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001569] - * unactivated egg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001569] + * mature egg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001569 ] + * unactivated egg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001569 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[consider](../../er/oboInOwl#consider.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_2001769.md b/md/UBERON/69/UBERON_2001769.md index 4d60505567..8d98629b3b 100644 --- a/md/UBERON/69/UBERON_2001769.md +++ b/md/UBERON/69/UBERON_2001769.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2001869.md b/md/UBERON/69/UBERON_2001869.md index b22ba7bb9d..24c0094e06 100644 --- a/md/UBERON/69/UBERON_2001869.md +++ b/md/UBERON/69/UBERON_2001869.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001869 * *Label* = supraneural 2 cartilage - * *Definition* = Postcranial axial cartilage located dorsal to vertebra 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcranial axial cartilage located dorsal to vertebra 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2001969.md b/md/UBERON/69/UBERON_2001969.md index c8e39ac75d..050e152434 100644 --- a/md/UBERON/69/UBERON_2001969.md +++ b/md/UBERON/69/UBERON_2001969.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001969 * *Label* = inner mental barbel - * *Definition* = Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2002069.md b/md/UBERON/69/UBERON_2002069.md index 7af3b5dcfa..36b1fdadd1 100644 --- a/md/UBERON/69/UBERON_2002069.md +++ b/md/UBERON/69/UBERON_2002069.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002069 * *Label* = distal cartilage of posterior process of basipterygium - * *Definition* = Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2002269.md b/md/UBERON/69/UBERON_2002269.md index e834a8f858..407ba351a0 100644 --- a/md/UBERON/69/UBERON_2002269.md +++ b/md/UBERON/69/UBERON_2002269.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002269 * *Label* = interarcual cartilage - * *Definition* = Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage located between uncinate process of epibranchial 1 and pharyngobranchial 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = An interarcual cartilage is present in percomorph fishes (Johnson and Patterson 1993). ## Synonyms - * IAC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002269] + * IAC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002269 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2005269.md b/md/UBERON/69/UBERON_2005269.md index d1199d53d6..ab8d8baead 100644 --- a/md/UBERON/69/UBERON_2005269.md +++ b/md/UBERON/69/UBERON_2005269.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005269 * *Label* = hypophyseal fenestra - * *Definition* = Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-192] + * *Definition* = Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-192 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T07:33:26Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_2005369.md b/md/UBERON/69/UBERON_2005369.md index 27abf80fd0..b662902a3c 100644 --- a/md/UBERON/69/UBERON_2005369.md +++ b/md/UBERON/69/UBERON_2005369.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3000069.md b/md/UBERON/69/UBERON_3000069.md index 0ce470dffb..5259fe3daf 100644 --- a/md/UBERON/69/UBERON_3000069.md +++ b/md/UBERON/69/UBERON_3000069.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3000469.md b/md/UBERON/69/UBERON_3000469.md index 360f88633b..4d7f7007db 100644 --- a/md/UBERON/69/UBERON_3000469.md +++ b/md/UBERON/69/UBERON_3000469.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3000569.md b/md/UBERON/69/UBERON_3000569.md index 720c41dc65..8b283c1b7a 100644 --- a/md/UBERON/69/UBERON_3000569.md +++ b/md/UBERON/69/UBERON_3000569.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000569 * *Label* = solum nasi - * *Definition* = Unpaired, horizontal plate that forms the floor of the nasal capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Unpaired, horizontal plate that forms the floor of the nasal capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * nasal floor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000569] - * planum basale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000569] - * solum nasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000569] + * nasal floor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000569 ] + * planum basale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000569 ] + * solum nasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000569 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3000869.md b/md/UBERON/69/UBERON_3000869.md index 1fd5e7e0ee..84ea95bb43 100644 --- a/md/UBERON/69/UBERON_3000869.md +++ b/md/UBERON/69/UBERON_3000869.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000869 * *Label* = ilial protuberance - * *Definition* = Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * dorsal protuberance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000869] - * tuber superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000869] + * dorsal protuberance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000869 ] + * tuber superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000869 ] ## Cross-references @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3000969.md b/md/UBERON/69/UBERON_3000969.md index 707a19adca..291a640071 100644 --- a/md/UBERON/69/UBERON_3000969.md +++ b/md/UBERON/69/UBERON_3000969.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/69/UBERON_3010069.md b/md/UBERON/69/UBERON_3010069.md index cb03f5b0a9..2483e6751c 100644 --- a/md/UBERON/69/UBERON_3010069.md +++ b/md/UBERON/69/UBERON_3010069.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010069 * *Label* = intermedium (fore) - * *Definition* = Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3010369.md b/md/UBERON/69/UBERON_3010369.md index dc5e5c1440..ccb42f053d 100644 --- a/md/UBERON/69/UBERON_3010369.md +++ b/md/UBERON/69/UBERON_3010369.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010369 * *Label* = branchial arch skeleton - * *Definition* = Skeletal and cartilaginous elements of the branchial arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first branchial arch, or the third pharyngeal arch, but some authors do not follow this convention. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:8589427] + * *Definition* = Skeletal and cartilaginous elements of the branchial arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first branchial arch, or the third pharyngeal arch, but some authors do not follow this convention. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:8589427 ] ## Synonyms - * Pharyngeal arch skeleton 3-7> [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010369] - * gill arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010369] - * visceral arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010369] + * Pharyngeal arch skeleton 3-7> [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010369 ] + * gill arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010369 ] + * visceral arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010369 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_3010669.md b/md/UBERON/69/UBERON_3010669.md index 2a0e41871c..1e74226023 100644 --- a/md/UBERON/69/UBERON_3010669.md +++ b/md/UBERON/69/UBERON_3010669.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010669 * *Label* = trunk maxillary-mandibularis - * *Definition* = Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Portion of the trigeminal nerve where the maxillary and mandibular rami run together prior to bifurcating. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_4200069.md b/md/UBERON/69/UBERON_4200069.md index 85be71c15e..f099c25acb 100644 --- a/md/UBERON/69/UBERON_4200069.md +++ b/md/UBERON/69/UBERON_4200069.md @@ -33,7 +33,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/69/UBERON_4200169.md b/md/UBERON/69/UBERON_4200169.md index 961d090522..edfc71054f 100644 --- a/md/UBERON/69/UBERON_4200169.md +++ b/md/UBERON/69/UBERON_4200169.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0000070.md b/md/UBERON/70/UBERON_0000070.md index fd6bd09dbd..fb7fa0207d 100644 --- a/md/UBERON/70/UBERON_0000070.md +++ b/md/UBERON/70/UBERON_0000070.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000070 * *Label* = pupal stage - * *Definition* = A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] + * *Definition* = A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] ## Synonyms * pupa stage - * aurelia stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] - * chrysalides stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] - * chrysalis stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:37572[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupa] + * aurelia stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] + * chrysalides stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] + * chrysalis stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:37572, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupa ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0000170.md b/md/UBERON/70/UBERON_0000170.md index 39a7c8152e..9af786238e 100644 --- a/md/UBERON/70/UBERON_0000170.md +++ b/md/UBERON/70/UBERON_0000170.md @@ -8,7 +8,7 @@ * lungs * lungs pair - * pulmones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68877[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pulmones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68877, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * set of lungs ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0000370.md b/md/UBERON/70/UBERON_0000370.md index f4861e7420..74f810b281 100644 --- a/md/UBERON/70/UBERON_0000370.md +++ b/md/UBERON/70/UBERON_0000370.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000370 * *Label* = adductor magnus - * *Definition* = An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_magnus_muscle] + * *Definition* = An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_magnus_muscle ] * *Comment* = Definition generalized to accommodate AAO class - "Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur." [AAO:0010040] ## Synonyms * adductor magnus muscle - * musculus adductor magnus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_magnus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus adductor magnus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_magnus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0000470.md b/md/UBERON/70/UBERON_0000470.md index b5910628be..56e0e7e8e3 100644 --- a/md/UBERON/70/UBERON_0000470.md +++ b/md/UBERON/70/UBERON_0000470.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000470 * *Label* = cell part - * *Definition* = Anatomical structure that is a direct part of the cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical structure that is a direct part of the cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] * *Comment* = todo - move metadata to GO and obsolete this class. Note the inconsistency between the usage of the label 'cell component' in GO and CARO ## Synonyms - * cell component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000014] + * cell component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000014 ] ## Cross-references @@ -22,7 +22,7 @@ * NIF_Subcellular:sao-1337158144 * OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA * TGMA:0001834 - * UMLS:C1178969 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cell_Part] + * UMLS:C1178969 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cell_Part ] * ncithesaurus:Cell_Part ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cell](../../CL/00/CL_0000000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0000970.md b/md/UBERON/70/UBERON_0000970.md index 0e91295dd9..4c312bb926 100644 --- a/md/UBERON/70/UBERON_0000970.md +++ b/md/UBERON/70/UBERON_0000970.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000970 * *Label* = eye - * *Definition* = An organ that detects light. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An organ that detects light. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva, ## Synonyms * photoreceptor * light-detecting organ - * visual apparatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100336] + * visual apparatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100336 ] ## Cross-references @@ -51,8 +51,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ocular * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = optic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001070.md b/md/UBERON/70/UBERON_0001070.md index 24dba393d3..667c028ee4 100644 --- a/md/UBERON/70/UBERON_0001070.md +++ b/md/UBERON/70/UBERON_0001070.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001070 * *Label* = external carotid artery - * *Definition* = In human anatomy, the external carotid artery is a major artery of the head and neck. It arises from the common carotid artery when it bifurcates into the external and internal carotid artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_carotid_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722] + * *Definition* = In human anatomy, the external carotid artery is a major artery of the head and neck. It arises from the common carotid artery when it bifurcates into the external and internal carotid artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_carotid_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722 ] * *Comment* = Taxon notes: not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO ## Synonyms - * arteria carotis externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_carotid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria carotis externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_carotid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A07.231.114.186.200.210 * OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA * SCTID:362044002 - * UMLS:C0007275 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Carotid_Artery] + * UMLS:C0007275 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Carotid_Artery ] * VHOG:0000265 * Wikipedia:External_carotid_artery * XAO:0000345 @@ -56,8 +56,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001170.md b/md/UBERON/70/UBERON_0001170.md index f3b3150e89..857089aadb 100644 --- a/md/UBERON/70/UBERON_0001170.md +++ b/md/UBERON/70/UBERON_0001170.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001170 * *Label* = mesentery of small intestine - * *Definition* = the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery#Mesentery_.28proper.29] + * *Definition* = the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery#Mesentery_.28proper.29 ] ## Synonyms - * mesentery (proper) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery] - * mesentery proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14643] - * small intestinal mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14643] - * small intestine mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesentery (proper) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery ] + * mesentery proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14643 ] + * small intestinal mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14643 ] + * small intestine mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001270.md b/md/UBERON/70/UBERON_0001270.md index e275d9da75..9fef8d60a3 100644 --- a/md/UBERON/70/UBERON_0001270.md +++ b/md/UBERON/70/UBERON_0001270.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001270 * *Label* = bony pelvis - * *Definition* = In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/bony+pelvis] + * *Definition* = In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/bony+pelvis ] * *Comment* = in FMA, this is part of the axial skeletal system. todo: add taxon-specific part of relations connecting sub-structures to this. ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001370.md b/md/UBERON/70/UBERON_0001370.md index 434c594ad1..6c8bb216c9 100644 --- a/md/UBERON/70/UBERON_0001370.md +++ b/md/UBERON/70/UBERON_0001370.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001370 * *Label* = gluteus maximus - * *Definition* = The gluteus maximus is the largest and most superficial of the three gluteal muscles. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_maximus_muscle] + * *Definition* = The gluteus maximus is the largest and most superficial of the three gluteal muscles. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_maximus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * gluteus maximus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_maximus_muscle] + * gluteus maximus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_maximus_muscle ] * glutus maximus * m.gluteus maximus - * glutaeus maximus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_maximus_muscle] + * glutaeus maximus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_maximus_muscle ] * gluteus superficialis - * musculus gluteus maximus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_maximus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus gluteus maximus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_maximus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002309 * OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA * SCTID:181674001 - * UMLS:C0224424 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gluteus_Maximus] + * UMLS:C0224424 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gluteus_Maximus ] * Wikipedia:Gluteus_maximus_muscle * http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001470.md b/md/UBERON/70/UBERON_0001470.md index 72354d8e28..b1e6750cd1 100644 --- a/md/UBERON/70/UBERON_0001470.md +++ b/md/UBERON/70/UBERON_0001470.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001470 * *Label* = glenohumeral joint - * *Definition* = The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glenohumeral_joint] + * *Definition* = The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glenohumeral_joint ] * *Comment* = AO notes: in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle. Editor notes: note that in this ontology 'glenoid fossa' is a cavity (consistent with FMA) - consider adding a class for the surface of the scapula that is adjacent to this cavity, and making a more explicit connects relationship ## Synonyms - * articulatio humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25912[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * humeral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25912] - * joint of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000459] - * articulatio humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glenohumeral_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * humeroscapular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glenohumeral_joint] + * articulatio humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25912, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * humeral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25912 ] + * joint of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000459 ] + * articulatio humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glenohumeral_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * humeroscapular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glenohumeral_joint ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A02.835.583.748 * OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA * SCTID:182168000 - * UMLS:C0037009 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Shoulder_Joint] + * UMLS:C0037009 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Shoulder_Joint ] * VHOG:0001002 * Wikipedia:Glenohumeral_joint * galen:ShoulderJoint @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [connects](../../ts/core#connects.md) some [scapula](../../UBERON/49/UBERON_0006849.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001570.md b/md/UBERON/70/UBERON_0001570.md index 32895badb4..074d785077 100644 --- a/md/UBERON/70/UBERON_0001570.md +++ b/md/UBERON/70/UBERON_0001570.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001570 * *Label* = inferior pharyngeal constrictor - * *Definition* = The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] + * *Definition* = The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] ## Synonyms - * constrictor muscle of pharynx inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002279] + * constrictor muscle of pharynx inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002279 ] * constrictores pharyngis caudales - * inferior constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46623] - * inferior constrictor of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46623] - * inferior constrictor pharyngeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46623] - * musculus constrictor pharyngis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46623[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus constrictor pharyngis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * constrictor inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] - * constrictor pharyngis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] - * inferior constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] - * inferior constrictor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] - * inferior pharyngeal constrictor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle] - * musculus constrictor pharyngis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pharyngeal_constrictor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46623 ] + * inferior constrictor of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46623 ] + * inferior constrictor pharyngeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46623 ] + * musculus constrictor pharyngis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46623, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus constrictor pharyngis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * constrictor inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] + * constrictor pharyngis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] + * inferior constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] + * inferior constrictor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] + * inferior pharyngeal constrictor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle ] + * musculus constrictor pharyngis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pharyngeal_constrictor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001670.md b/md/UBERON/70/UBERON_0001670.md index 7aa6cf151b..f6e4eca70b 100644 --- a/md/UBERON/70/UBERON_0001670.md +++ b/md/UBERON/70/UBERON_0001670.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001670 * *Label* = inferior cerebellar vein - * *Definition* = The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_cerebellar_vein] + * *Definition* = The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_cerebellar_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001770.md b/md/UBERON/70/UBERON_0001770.md index 4a6f53214a..2c5ce5adc3 100644 --- a/md/UBERON/70/UBERON_0001770.md +++ b/md/UBERON/70/UBERON_0001770.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001770 * *Label* = lacrimal canaliculus - * *Definition* = The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampull. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_canaliculi] + * *Definition* = The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampull. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_canaliculi ] * *Comment* = todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal ## Synonyms - * canaliculus lacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_canaliculi[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canaliculus lacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_canaliculi, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:58245 * MA:0001294 * SCTID:263348000 - * UMLS:C0459631 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Canaliculus] + * UMLS:C0459631 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Canaliculus ] * Wikipedia:Lacrimal_canaliculi * ncithesaurus:Lacrimal_Canaliculus @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001870.md b/md/UBERON/70/UBERON_0001870.md index 10370b143c..aab198d94e 100644 --- a/md/UBERON/70/UBERON_0001870.md +++ b/md/UBERON/70/UBERON_0001870.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001870 * *Label* = frontal cortex - * *Definition* = Anterior portion of the frontal cortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090601] + * *Definition* = Anterior portion of the frontal cortex, lying anterior to the central sulcus in humans. It is bounded by the parietal cortex posteriorly and the temporal cortex laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090601 ] * *Comment* = Editor note: Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though [MM] ## Synonyms - * frontal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61824] + * frontal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61824 ] * frontal region - * regio frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61824[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobi frontales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:56[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61824, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobi frontales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:56, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,12 +30,12 @@ * MESH:A08.186.211.730.885.213.270 * NIF_GrossAnatomy:birnlex_928 * NIF_GrossAnatomy:nlx_anat_20090601 - * NeuroNames:56 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_928] + * NeuroNames:56 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_928 ] * OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA * SCTID:180920004 - * UMLS:C0016733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_928] - * UMLS:C0016733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Lobe] - * UMLS:C1268977 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_928] + * UMLS:C0016733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_928 ] + * UMLS:C0016733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Lobe ] + * UMLS:C1268977 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_928 ] * Wikipedia:Frontal_lobe * http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png @@ -63,8 +63,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0001970.md b/md/UBERON/70/UBERON_0001970.md index 93fb0823cd..ba962eaee8 100644 --- a/md/UBERON/70/UBERON_0001970.md +++ b/md/UBERON/70/UBERON_0001970.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001970 * *Label* = bile - * *Definition* = a bitter-tasting, dark green to yellowish brown fluid, produced by the liver of most vertebrates, that aids the process of digestion of lipids in the small intestine. In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum. Bile is a composition of the following materials: water (85%), bile salts (10%), mucus and pigments (3%), fats (1%), inorganic salts (0.7%) and cholesterol (0.3%)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bile] + * *Definition* = a bitter-tasting, dark green to yellowish brown fluid, produced by the liver of most vertebrates, that aids the process of digestion of lipids in the small intestine. In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum. Bile is a composition of the following materials: water (85%), bile salts (10%), mucus and pigments (3%), fats (1%), inorganic salts (0.7%) and cholesterol (0.3%)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bile ] ## Synonyms - * fel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000121] - * gall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000121] + * fel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000121 ] + * gall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000121 ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:1157 * MA:0002513 * MESH:A12.200.087 - * UMLS:C0005388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bile] + * UMLS:C0005388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bile ] * Wikipedia:Bile * galen:Bile * ncithesaurus:Bile @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002070.md b/md/UBERON/70/UBERON_0002070.md index 2c050603a8..c44076725c 100644 --- a/md/UBERON/70/UBERON_0002070.md +++ b/md/UBERON/70/UBERON_0002070.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002070 * *Label* = superior pancreaticoduodenal artery - * *Definition* = The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pancreaticoduodenal_artery] + * *Definition* = The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pancreaticoduodenal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bauchspeicheldrsenzwlffingerdarmpulsader@de [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] + * bauchspeicheldrsenzwlffingerdarmpulsader@de [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml ] * superior pancreatico-duodenal artery - * superior pancreatoduodenal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml] - * arteria pancreaticoduodenalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_pancreaticoduodenal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior pancreatoduodenal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml ] + * arteria pancreaticoduodenalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_pancreaticoduodenal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:70437 * MA:0002015 * SCTID:244272009 - * UMLS:C0226317 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Pancreatico-Duodenal_Artery] + * UMLS:C0226317 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Pancreatico-Duodenal_Artery ] * Wikipedia:Superior_pancreaticoduodenal_artery * http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray533.png/200px-Gray533.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002170.md b/md/UBERON/70/UBERON_0002170.md index 34ae1dbd99..5ce896ae9d 100644 --- a/md/UBERON/70/UBERON_0002170.md +++ b/md/UBERON/70/UBERON_0002170.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002170 * *Label* = upper lobe of right lung - * *Definition* = The lobe of the right lung that is closest to the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The lobe of the right lung that is closest to the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * lobus superior pulmonis dextri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus superior pulmonis dextri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * right cranial lobe of lung - * right lung cranial lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000429] - * right upper lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7333] - * right upper lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7333] - * superior lobe of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7333] - * upper lobe of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:UpperLobeOfRightLung] - * right lung superior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000429] + * right lung cranial lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000429 ] + * right upper lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7333 ] + * right upper lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7333 ] + * superior lobe of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7333 ] + * upper lobe of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:UpperLobeOfRightLung ] + * right lung superior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000429 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:7333 * MA:0000429 * SCTID:361969002 - * UMLS:C1261074 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Lobe_of_the_Right_Lung] + * UMLS:C1261074 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Lobe_of_the_Right_Lung ] * VHOG:0000859 * galen:UpperLobeOfRightLung * ncithesaurus:Upper_Lobe_of_the_Right_Lung @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) and [upper lobe of lung](../../UBERON/48/UBERON_0008948.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002270.md b/md/UBERON/70/UBERON_0002270.md index f3fe95ea6b..fcb4153023 100644 --- a/md/UBERON/70/UBERON_0002270.md +++ b/md/UBERON/70/UBERON_0002270.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002270 * *Label* = hyaloid artery - * *Definition* = The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. . Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyaloid_artery] + * *Definition* = The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. . Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as 'floaters'. An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyaloid_artery ] * *Comment* = ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. ## Synonyms - * arteria hyaloidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyaloid_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Cloquet's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyaloid_artery] - * Cloquets canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyaloid_artery] - * central artery of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19242] + * arteria hyaloidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyaloid_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Cloquet's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyaloid_artery ] + * Cloquets canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyaloid_artery ] + * central artery of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19242 ] ## Cross-references @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery that is internal to the eye. Isogai et al. 2001.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002370.md b/md/UBERON/70/UBERON_0002370.md index 25bc94ec07..bebe0971a0 100644 --- a/md/UBERON/70/UBERON_0002370.md +++ b/md/UBERON/70/UBERON_0002370.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002370 * *Label* = thymus - * *Definition* = Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NLM:thymus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thymus] + * *Definition* = Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NLM:thymus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thymus ] * *Comment* = check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland. ## Synonyms @@ -29,7 +29,7 @@ * OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA * SCTID:118507000 * TAO:0001078 - * UMLS:C0040113 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymus_Gland] + * UMLS:C0040113 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymus_Gland ] * VHOG:0000253 * Wikipedia:Thymus * XAO:0000163 @@ -74,8 +74,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A thymus develops in all vertebrates from the endodermal epithelium of certain pharyngeal pouches and from the adjacent ectodermal epithelium. In fishes, all the pouches, or the first four, contribute to thymus formation, but in tetrapods, the number is more restricted. In mammals, only the third and fourth are involved, and the contribution of the third is by far the greater.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = thymic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002470.md b/md/UBERON/70/UBERON_0002470.md index f54566b5ea..52a47140d3 100644 --- a/md/UBERON/70/UBERON_0002470.md +++ b/md/UBERON/70/UBERON_0002470.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002470 * *Label* = autopod region - * *Definition* = Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Terminal segment of free limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group; note that this refers to the limb segment, not just the skeleton. ## Synonyms - * autopodial limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * autopodial limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] * autopodial segment * autopodium * autopodium region - * distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83015] - * distal segment of free limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83015] - * autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002714] + * distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83015 ] + * distal segment of free limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83015 ] + * autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002714 ] * autopodial element * manus/pes * paw @@ -31,7 +31,7 @@ * MAT:0000091 * MIAA:0000091 * SCTID:95936004 - * UMLS:C0687080 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paw] + * UMLS:C0687080 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paw ] * ncithesaurus:Paw ## Subsets @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002570.md b/md/UBERON/70/UBERON_0002570.md index 4cd18c6b8f..3bb8b65804 100644 --- a/md/UBERON/70/UBERON_0002570.md +++ b/md/UBERON/70/UBERON_0002570.md @@ -6,18 +6,18 @@ ## Synonyms - * gyrus orbitalis longitudinalis internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:93[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus orbitalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:93[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus orbitalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:93[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus orbitalis longitudinalis internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:93, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus orbitalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:93, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus orbitalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:93, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:MOrG * FMA:62419 * NIF_GrossAnatomy:birnlex_1046 - * NeuroNames:93 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1046] + * NeuroNames:93 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1046 ] * SCTID:279194002 - * UMLS:C0175179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1046] + * UMLS:C0175179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1046 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002670.md b/md/UBERON/70/UBERON_0002670.md index c7afb5800c..ca3fe1675c 100644 --- a/md/UBERON/70/UBERON_0002670.md +++ b/md/UBERON/70/UBERON_0002670.md @@ -6,28 +6,28 @@ ## Synonyms - * anterior ascending limb of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] - * anterior ascending ramus of lateral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] - * ascending branch of lateral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] - * ascending ramus of lateral cerebral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] + * anterior ascending limb of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] + * anterior ascending ramus of lateral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] + * ascending branch of lateral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] + * ascending ramus of lateral cerebral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] * ascending ramus of sylvian fissure - * middle ramus of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] - * ramus ascendens sulci lateralis cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior branch of lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83759] - * anterior ascending limb of the lateral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68] - * ramus anterior ascendens fissurae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus ascendens sulci cerebri lateralis (Sylvii) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus ascendens sulcus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus verticalis fissurae sylvii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus lateralis, ramus ascendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:68[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle ramus of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] + * ramus ascendens sulci lateralis cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior branch of lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83759 ] + * anterior ascending limb of the lateral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68 ] + * ramus anterior ascendens fissurae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus ascendens sulci cerebri lateralis (Sylvii) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus ascendens sulcus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus verticalis fissurae sylvii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus lateralis, ramus ascendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:68, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:aals * FMA:83759 * NIF_GrossAnatomy:birnlex_1330 - * NeuroNames:68 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1330] - * UMLS:C0262186 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1330] + * NeuroNames:68 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1330 ] + * UMLS:C0262186 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1330 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002770.md b/md/UBERON/70/UBERON_0002770.md index db3c00b2c6..1843c6915d 100644 --- a/md/UBERON/70/UBERON_0002770.md +++ b/md/UBERON/70/UBERON_0002770.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002770 * *Label* = posterior hypothalamic region - * *Definition* = The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.211.730.385.357.362] + * *Definition* = The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.211.730.385.357.362 ] ## Synonyms - * mammillary level of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62029] - * mammillary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62029] - * posterior hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62029] - * PHR [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1651[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * hypothalamus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:411[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio hypothalamica posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:411[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mammillary level of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62029 ] + * mammillary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62029 ] + * posterior hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62029 ] + * PHR [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1651, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * hypothalamus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:411, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio hypothalamica posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:411, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * GAID:651 * MESH:A08.186.211.730.385.357.362 * NIF_GrossAnatomy:birnlex_1651 - * NeuroNames:411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1651] - * UMLS:C0020670 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1651] + * NeuroNames:411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1651 ] + * UMLS:C0020670 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1651 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002870.md b/md/UBERON/70/UBERON_0002870.md index 9368be7237..656908be63 100644 --- a/md/UBERON/70/UBERON_0002870.md +++ b/md/UBERON/70/UBERON_0002870.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002870 * *Label* = dorsal motor nucleus of vagus nerve - * *Definition* = The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] + * *Definition* = The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] ## Synonyms - * dorsal efferent nucleus of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54592] - * dorsal motor nucleus of vagus X nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001036] - * dorsal vagal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2642] - * nucleus alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2642] - * dorsal motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:755] - * dorsal motor nucleus of the vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal motor nucleus of the vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal motor nucleus of vagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:10] - * dorsal motor nucleus of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal motor vagal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal nucleus of the vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal nucleus of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * dorsal vagal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * nucleus alaris (Oertel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsalis motorius nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsalis nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus posterior nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * nucleus vagalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:755[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior nucleus of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] - * vagus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_nucleus_of_vagus_nerve] + * dorsal efferent nucleus of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54592 ] + * dorsal motor nucleus of vagus X nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001036 ] + * dorsal vagal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2642 ] + * nucleus alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2642 ] + * dorsal motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:755 ] + * dorsal motor nucleus of the vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal motor nucleus of the vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal motor nucleus of vagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:10 ] + * dorsal motor nucleus of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal motor vagal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal nucleus of the vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal nucleus of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * dorsal vagal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * nucleus alaris (Oertel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsalis motorius nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsalis nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus posterior nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * nucleus vagalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:755, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior nucleus of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] + * vagus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_nucleus_of_vagus_nerve ] ## Cross-references @@ -40,10 +40,10 @@ * FMA:54592 * MA:0001036 * NIF_GrossAnatomy:birnlex_2642 - * NeuroNames:755 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2642] + * NeuroNames:755 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2642 ] * SCTID:52884007 - * UMLS:C0152401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2642] - * UMLS:C0926535 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve] + * UMLS:C0152401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2642 ] + * UMLS:C0926535 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve ] * Wikipedia:Dorsal_nucleus_of_vagus_nerve * http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray697.png/200px-Gray697.png * ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve @@ -67,8 +67,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0002970.md b/md/UBERON/70/UBERON_0002970.md index ef141ca20a..0d5e45ab22 100644 --- a/md/UBERON/70/UBERON_0002970.md +++ b/md/UBERON/70/UBERON_0002970.md @@ -6,19 +6,19 @@ ## Synonyms - * intermediate nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * intermediate oculomotor cell column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72420] - * I3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_803[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * interoculomotor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:I3] - * nucleus nervi oculomotorii, pars intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:494[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intermediate nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * intermediate oculomotor cell column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72420 ] + * I3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_803, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * interoculomotor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:I3 ] + * nucleus nervi oculomotorii, pars intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:494, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:I3 * FMA:72420 * NIF_GrossAnatomy:birnlex_803 - * NeuroNames:494 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_803] - * UMLS:C0175378 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_803] + * NeuroNames:494 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_803 ] + * UMLS:C0175378 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_803 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0003070.md b/md/UBERON/70/UBERON_0003070.md index 2265f192c5..af7cf4fff9 100644 --- a/md/UBERON/70/UBERON_0003070.md +++ b/md/UBERON/70/UBERON_0003070.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003070 * *Label* = trigeminal placode - * *Definition* = The ectodermal rudiment of the trigeminal ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000109] + * *Definition* = The ectodermal rudiment of the trigeminal ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000109 ] * *Comment* = Fig9-5 of ISBN10:0471888893 calls this the profundus placode; XAO says 'profundal and the trigeminal ganglia are separate distally but fused at their proximal end...' ## Synonyms * trigeminal V placode - * profundus V placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * profundus placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * profundus V placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * profundus placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The dorsolateral placodes (trigeminal and vestibular) develop from ectoderm lateral to the brain (...). In summary, the collective term 'placodes' refers to some rather different structures, probably with different evolutionary origins. Some sensory placodes (at least the otic and olfactory) may have homologues in basal chordates. Even if this is so, it is apparent that they were elaborated considerably during early vertebrate evolution. Epibranchial and dorsolateral placodes appear to be new; we infer that their origin depended on the evolution of specific inductive signals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0003170.md b/md/UBERON/70/UBERON_0003170.md index a11450e64b..93dc83d984 100644 --- a/md/UBERON/70/UBERON_0003170.md +++ b/md/UBERON/70/UBERON_0003170.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004552 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0001006 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003170 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/70/UBERON_0003470.md b/md/UBERON/70/UBERON_0003470.md index dc0b3838e8..4771b7fc93 100644 --- a/md/UBERON/70/UBERON_0003470.md +++ b/md/UBERON/70/UBERON_0003470.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003470 * *Label* = artery of upper lip - * *Definition* = The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_labial_artery] + * *Definition* = The superior labial artery (superior labial branch of facial artery) is larger and more tortuous than the inferior labial artery. It follows a similar course along the edge of the upper lip, lying between the mucous membrane and the Orbicularis oris, and anastomoses with the artery of the opposite side. It supplies the upper lip, and gives off in its course two or three vessels which ascend to the nose; a septal branch ramifies on the nasal septum as far as the point of the nose, and an alar branch supplies the ala of the nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_labial_artery ] ## Synonyms - * arteria labialis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_labial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus labialis superior arteriae facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_labial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior labial artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49570] - * superior labial branch of facial artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49570] + * arteria labialis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_labial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus labialis superior arteriae facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_labial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior labial artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49570 ] + * superior labial branch of facial artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49570 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [upper lip](../../UBERON/34/UBERON_0001834.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0003570.md b/md/UBERON/70/UBERON_0003570.md index 06929fc114..d1324a5819 100644 --- a/md/UBERON/70/UBERON_0003570.md +++ b/md/UBERON/70/UBERON_0003570.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003570 * *Label* = respiratory system connective tissue - * *Definition* = A portion of connective tissue that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0003670.md b/md/UBERON/70/UBERON_0003670.md index 64d67d95ac..43cef67f37 100644 --- a/md/UBERON/70/UBERON_0003670.md +++ b/md/UBERON/70/UBERON_0003670.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003670 * *Label* = smegma - * *Definition* = a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Smegma] + * *Definition* = a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Smegma ] ## Synonyms @@ -13,7 +13,7 @@ * FMA:19656 * GAID:1170 * MESH:A12.200.769 - * UMLS:C0037359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Smegma] + * UMLS:C0037359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Smegma ] * Wikipedia:Smegma * ncithesaurus:Smegma @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0003970.md b/md/UBERON/70/UBERON_0003970.md index ebdd490721..7a3630420a 100644 --- a/md/UBERON/70/UBERON_0003970.md +++ b/md/UBERON/70/UBERON_0003970.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003970 * *Label* = placental labyrinth vasculature - * *Definition* = blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008803] + * *Definition* = blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008803 ] ## Synonyms - * placenta vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * placenta vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular network of placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasculature of placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * placenta vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * placenta vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular network of placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasculature of placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [placenta](../../UBERON/87/UBERON_0001987.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004070.md b/md/UBERON/70/UBERON_0004070.md index e0f21af1cd..68d559db3d 100644 --- a/md/UBERON/70/UBERON_0004070.md +++ b/md/UBERON/70/UBERON_0004070.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004070 * *Label* = cerebellum vermis lobule - * *Definition* = the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009957] + * *Definition* = the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009957 ] * *Comment* = TODO - define as a region overlapping ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellum lobule](../../UBERON/04/UBERON_0004004.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar vermis](../../UBERON/20/UBERON_0004720.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004170.md b/md/UBERON/70/UBERON_0004170.md index 2053d27d1b..23d34fb5d4 100644 --- a/md/UBERON/70/UBERON_0004170.md +++ b/md/UBERON/70/UBERON_0004170.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004170 * *Label* = spinal cord ventral commissure - * *Definition* = the band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021965[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_white_commissure] + * *Definition* = the band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021965, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_white_commissure ] ## Synonyms - * anterior white commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695] - * anterior white commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77035] - * spinal cord anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695] - * ventral spinal commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695] - * ventral white column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695] - * ventral white commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77035] - * alba anterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_white_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anterior commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * commissura alba anterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_white_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral commissure of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:vc] - * white commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009695] + * anterior white commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695 ] + * anterior white commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77035 ] + * spinal cord anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695 ] + * ventral spinal commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695 ] + * ventral white column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695 ] + * ventral white commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77035 ] + * alba anterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_white_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anterior commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * commissura alba anterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_white_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral commissure of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:vc ] + * white commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009695 ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:77035 * NeuroNames:1641 * SCTID:424149007 - * UMLS:C1520137 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:White_Commissure] + * UMLS:C1520137 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:White_Commissure ] * Wikipedia:Anterior_white_commissure * http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray664.png * ncithesaurus:White_Commissure @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004270.md b/md/UBERON/70/UBERON_0004270.md index c440365b05..5f88979546 100644 --- a/md/UBERON/70/UBERON_0004270.md +++ b/md/UBERON/70/UBERON_0004270.md @@ -3,123 +3,123 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004270 * *Label* = lower leg connective tissue - * *Definition* = A portion of connective tissue that is part of a lower leg [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a lower leg [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intermediate segment of free lower limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity middle limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity zeugopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower leg portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower leg textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of intermediate segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of middle limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of zeugopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of leg textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zeugopod of lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intermediate segment of free lower limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity middle limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity zeugopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower leg portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower leg textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of intermediate segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of middle limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of zeugopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of leg textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zeugopod of lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -135,15 +135,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb zeugopod](../../UBERON/23/UBERON_0003823.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004370.md b/md/UBERON/70/UBERON_0004370.md index 2cbcc4aca0..b2598184e3 100644 --- a/md/UBERON/70/UBERON_0004370.md +++ b/md/UBERON/70/UBERON_0004370.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004370 * *Label* = anterior limiting lamina of cornea - * *Definition* = A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Bowman_s_Membrane] + * *Definition* = A transparent homogeneous acellular layer, 6 to 9 um thick, lying between the basal lamina of the outer layer of stratified epithelium and the substantia propria of the cornea; it is considered to be a basement membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Bowman_s_Membrane ] ## Synonyms - * Bowman's anterior elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58273] - * Bowman's layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58273] - * Bowman's membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58273] - * anterior limiting lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001240] - * anterior limiting lamina of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58273] - * lamina limitans anterior (cornea) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58273] - * Reichert's membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DUBIOUS] + * Bowman's anterior elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58273 ] + * Bowman's layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58273 ] + * Bowman's membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58273 ] + * anterior limiting lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001240 ] + * anterior limiting lamina of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58273 ] + * lamina limitans anterior (cornea) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58273 ] + * Reichert's membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DUBIOUS ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0001240 * SCTID:281075003 * TAO:0002155 - * UMLS:C0229127 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bowman_s_Membrane] + * UMLS:C0229127 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bowman_s_Membrane ] * Wikipedia:Bowman%27s_membrane * ZFA:0001684 * ncithesaurus:Bowman_s_Membrane @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004470.md b/md/UBERON/70/UBERON_0004470.md index 4bf6d07acc..38d00b517b 100644 --- a/md/UBERON/70/UBERON_0004470.md +++ b/md/UBERON/70/UBERON_0004470.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004470 * *Label* = musculature of pelvic girdle - * *Definition* = Any collection of muscles that is part of a pelvic girdle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pelvic girdle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: we merge two FMA classes here ## Synonyms - * muscle group of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50205] - * muscle group of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50248] - * pelvic girdle muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001429] - * pelvic girdle muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000427] - * pelvic girdle musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50205] - * set of muscles of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50205] + * muscle group of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50205 ] + * muscle group of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50248 ] + * pelvic girdle muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001429 ] + * pelvic girdle muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000427 ] + * pelvic girdle musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50205 ] + * set of muscles of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50205 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004485 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005633 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004670.md b/md/UBERON/70/UBERON_0004670.md index dd3278173c..d6a18299dd 100644 --- a/md/UBERON/70/UBERON_0004670.md +++ b/md/UBERON/70/UBERON_0004670.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004670 * *Label* = ependyma - * *Definition* = the thin epithelial membrane lining the ventricular system of the brain and the spinal cord. Ependyma is one of the four types of neuroglia in the central nervous system. It is involved in the production of cerebrospinal fluid (CSF). It is simple, columnar or cuboidal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000401[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ependyma] + * *Definition* = the thin epithelial membrane lining the ventricular system of the brain and the spinal cord. Ependyma is one of the four types of neuroglia in the central nervous system. It is involved in the production of cerebrospinal fluid (CSF). It is simple, columnar or cuboidal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000401, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ependyma ] * *Comment* = FMA breaks ependyma into epednyma proper (a subdivsion of epithelium) and epithelium of choroid plexus ## Synonyms - * ependyma of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242791] - * ependymal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000401] - * lamina epithelialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242791] + * ependyma of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242791 ] + * ependymal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000401 ] + * lamina epithelialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242791 ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A08.186.211.276.460 * NeuroNames:1856 * SCTID:12766003 - * UMLS:C0014472 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ependyma] + * UMLS:C0014472 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ependyma ] * Wikipedia:Ependyma * http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray667.png * ncithesaurus:Ependyma @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventricle of nervous system](../../UBERON/58/UBERON_0005358.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ependymal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004770.md b/md/UBERON/70/UBERON_0004770.md index 28835717fe..53fa08cee6 100644 --- a/md/UBERON/70/UBERON_0004770.md +++ b/md/UBERON/70/UBERON_0004770.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004770 * *Label* = articular system - * *Definition* = Anatomical system that consists of all the joints of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000181] + * *Definition* = Anatomical system that consists of all the joints of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000181 ] ## Synonyms - * joint system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23878] - * set of all joints of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23878] + * joint system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23878 ] + * set of all joints of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23878 ] * set of all joints - * set of joints of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23878] + * set of joints of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23878 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0004870.md b/md/UBERON/70/UBERON_0004870.md index 46c70db92e..9b63abff69 100644 --- a/md/UBERON/70/UBERON_0004870.md +++ b/md/UBERON/70/UBERON_0004870.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004870 * *Label* = superficial cervical lymph node - * *Definition* = A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_cervical_lymph_nodes[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ref:Stedmans] + * *Definition* = A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_cervical_lymph_nodes, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ref:Stedmans ] ## Synonyms - * nodi lymphoidei cervicales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_cervical_lymph_nodes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prescapular lymph node [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm] + * nodi lymphoidei cervicales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_cervical_lymph_nodes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prescapular lymph node [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm ] ## Cross-references * MA:0002886 * SCTID:279144003 - * UMLS:C0458297 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superficial_Cervical_Lymph_Node] + * UMLS:C0458297 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superficial_Cervical_Lymph_Node ] * Wikipedia:Superficial_cervical_lymph_nodes * http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg * ncithesaurus:Superficial_Cervical_Lymph_Node @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005070.md b/md/UBERON/70/UBERON_0005070.md index 2a38a8a018..893d5bdf5f 100644 --- a/md/UBERON/70/UBERON_0005070.md +++ b/md/UBERON/70/UBERON_0005070.md @@ -3,14 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005070 * *Label* = anterior neuropore - * *Definition* = The anterior neuropore appears before the process of neural tube closure is complete[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021506] - * *Comment* = GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube + * *Definition* = The neuropore at the anterior (rostral) end of the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * cephalic neuropore - * cranial neuropore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * rostral neuropore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16523] + * cranial neuropore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * rostral neuropore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16523 ] ## Cross-references @@ -26,9 +25,11 @@ ## Superclasses * [neuropore](../../UBERON/77/UBERON_0005077.md) + * [in_anterior_side_of](../../BSPO/23/BSPO_0000123.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Equivalencies + * [in_anterior_side_of](../../BSPO/23/BSPO_0000123.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) and [neuropore](../../UBERON/77/UBERON_0005077.md) ## Other Logical Axioms @@ -37,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005170.md b/md/UBERON/70/UBERON_0005170.md index bd75643298..0f47fc6fd1 100644 --- a/md/UBERON/70/UBERON_0005170.md +++ b/md/UBERON/70/UBERON_0005170.md @@ -6,10 +6,10 @@ ## Synonyms - * granulosa cell layer of ovarian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18660] - * membrana granulosa of ovarian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18660] - * stratum granulosum of ovarian follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18660] - * granulosa cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001112] + * granulosa cell layer of ovarian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18660 ] + * membrana granulosa of ovarian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18660 ] + * stratum granulosum of ovarian follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18660 ] + * granulosa cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001112 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005270.md b/md/UBERON/70/UBERON_0005270.md index f022218259..b92f2bcc5c 100644 --- a/md/UBERON/70/UBERON_0005270.md +++ b/md/UBERON/70/UBERON_0005270.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005270 * *Label* = renal cortex interstitium - * *Definition* = A portion of interstitial tissue that is part of a cortex of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of interstitial tissue that is part of a cortex of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney cortex interstitium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002608] - * cortical stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28136] + * kidney cortex interstitium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002608 ] + * cortical stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28136 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interstitial tissue](../../UBERON/69/UBERON_0005169.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005370.md b/md/UBERON/70/UBERON_0005370.md index 45d16c0082..f5fa2afb0b 100644 --- a/md/UBERON/70/UBERON_0005370.md +++ b/md/UBERON/70/UBERON_0005370.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005470.md b/md/UBERON/70/UBERON_0005470.md index eef0e04bea..38ab747a5a 100644 --- a/md/UBERON/70/UBERON_0005470.md +++ b/md/UBERON/70/UBERON_0005470.md @@ -6,7 +6,7 @@ ## Synonyms - * embryonic right umbilical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000523] + * embryonic right umbilical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000523 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005570.md b/md/UBERON/70/UBERON_0005570.md index 7c2d0ebda6..0e5da3f435 100644 --- a/md/UBERON/70/UBERON_0005570.md +++ b/md/UBERON/70/UBERON_0005570.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005570 * *Label* = rhombomere 2 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000763] - * floor plate rhombomere 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000763] - * floorplate r2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000763] + * floor plate r2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000763 ] + * floor plate rhombomere 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000763 ] + * floorplate r2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000763 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 2](../../UBERON/69/UBERON_0005569.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005670.md b/md/UBERON/70/UBERON_0005670.md index ce2302f19f..0d03ebabf1 100644 --- a/md/UBERON/70/UBERON_0005670.md +++ b/md/UBERON/70/UBERON_0005670.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005670 * *Label* = greater omentum mesothelium - * *Definition* = A mesothelium that is part of a greater omentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a greater omentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [greater omentum](../../UBERON/48/UBERON_0005448.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005870.md b/md/UBERON/70/UBERON_0005870.md index 620eb27cbf..ac5d74524c 100644 --- a/md/UBERON/70/UBERON_0005870.md +++ b/md/UBERON/70/UBERON_0005870.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005870 * *Label* = olfactory pit - * *Definition* = An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060166[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_pit] + * *Definition* = An indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060166, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_pit ] * *Comment* = we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode ## Synonyms - * nasal pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000275] + * nasal pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000275 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the nasal pits or olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[Wikipedia:Nasal_pit]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0005970.md b/md/UBERON/70/UBERON_0005970.md index fab4afdf95..a38fedd3e0 100644 --- a/md/UBERON/70/UBERON_0005970.md +++ b/md/UBERON/70/UBERON_0005970.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005970 * *Label* = brain commissure - * *Definition* = A commissure that is part of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A commissure that is part of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain[MP] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006070.md b/md/UBERON/70/UBERON_0006070.md index e099e39561..1be51a4af3 100644 --- a/md/UBERON/70/UBERON_0006070.md +++ b/md/UBERON/70/UBERON_0006070.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006070 * *Label* = coccygeal vertebra - * *Definition* = A caudal vertebra that is part of a coccyx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A caudal vertebra that is part of a coccyx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: we assume the MA class represents a subtype of caudal vertebra in what corresponds to the coccyx in humans ## Synonyms * coccygeal segment - * fused tail vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * caudal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12527[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * coccygea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001420] + * fused tail vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * caudal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12527, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * coccygea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001420 ] ## Cross-references @@ -20,7 +20,7 @@ * NeuroNames:1656 * OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA * SCTID:361774004 - * UMLS:C0223616 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Coccygeal_Vertebra] + * UMLS:C0223616 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Coccygeal_Vertebra ] * galen:CoccygealVertebra * ncithesaurus:Coccygeal_Vertebra @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [caudal vertebra](../../UBERON/95/UBERON_0001095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [coccyx](../../UBERON/50/UBERON_0001350.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006170.md b/md/UBERON/70/UBERON_0006170.md index 4c090d2ad8..18bab043b2 100644 --- a/md/UBERON/70/UBERON_0006170.md +++ b/md/UBERON/70/UBERON_0006170.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006170 * *Label* = mesonephric capsule - * *Definition* = The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061285[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * *Definition* = The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061285, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [kidney capsule](../../UBERON/15/UBERON_0002015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006270.md b/md/UBERON/70/UBERON_0006270.md index 33fb1c12a8..a5a9967be4 100644 --- a/md/UBERON/70/UBERON_0006270.md +++ b/md/UBERON/70/UBERON_0006270.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006270 * *Label* = optic pit - * *Definition* = A small indentation in the central part of the optic placode. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001162] + * *Definition* = A small indentation in the central part of the optic placode. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001162 ] * *Comment* = the pit deepens to form the optic vesicle. ## Synonyms - * optic sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004433] - * optic evagination [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16199] + * optic sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004433 ] + * optic evagination [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16199 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small indentation in the central part of the optic placode. [157-169, Mueller_F_and_ObRahilly_R, The_first_appearance_of_the_neural_tube_and_optic_primordium_in_the_human_embryo_at_stage_10._Anatomy_and_Embryology_(1985)_172][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles (reference 1); The first morphological sign of eye development in vertebrates is the bilateral evagination of diencephalon in the early neurula. In mammals, this is marked by the appearance of the optic pit, whereas in fish and amphibians a bulging of the optic primordia is observed. Continued evagination of the optic primordia leads to the formation of the optic vesicles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006470.md b/md/UBERON/70/UBERON_0006470.md index dfac79459b..7fe898e65a 100644 --- a/md/UBERON/70/UBERON_0006470.md +++ b/md/UBERON/70/UBERON_0006470.md @@ -6,16 +6,16 @@ ## Synonyms - * C8 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71186] - * C8 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1696] - * eighth cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1696] + * C8 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71186 ] + * C8 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1696 ] + * eighth cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1696 ] ## Cross-references * FMA:71186 * NIF_GrossAnatomy:birnlex_1696 * SCTID:278761001 - * UMLS:C0457858 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1696] + * UMLS:C0457858 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1696 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006570.md b/md/UBERON/70/UBERON_0006570.md index cbc878a0ce..59ecf69310 100644 --- a/md/UBERON/70/UBERON_0006570.md +++ b/md/UBERON/70/UBERON_0006570.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006570 * *Label* = trabecula carnea of right ventricle - * *Definition* = A trabecula carnea that is part of a heart right ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A trabecula carnea that is part of a heart right ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trabeculae carneae (ventriculus dexter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7270] + * trabeculae carneae (ventriculus dexter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7270 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) and [trabecula carnea](../../UBERON/11/UBERON_0002511.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006670.md b/md/UBERON/70/UBERON_0006670.md index 045b52747d..6fe355f312 100644 --- a/md/UBERON/70/UBERON_0006670.md +++ b/md/UBERON/70/UBERON_0006670.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006670 * *Label* = central tendon of diaphragm - * *Definition* = The central tendon of the diaphragm is a thin but strong aponeurosis situated near the center of the vault formed by the muscle, but somewhat closer to the front than to the back of the thorax, so that the posterior muscular fibers are longer. It is situated immediately below the pericardium(fibrous part), with which it is partially blended. The caval opening(T8) passes through the central tendon. This transmits the inferior vena cava & right phrenic nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_tendon_of_diaphragm] + * *Definition* = The central tendon of the diaphragm is a thin but strong aponeurosis situated near the center of the vault formed by the muscle, but somewhat closer to the front than to the back of the thorax, so that the posterior muscular fibers are longer. It is situated immediately below the pericardium(fibrous part), with which it is partially blended. The caval opening(T8) passes through the central tendon. This transmits the inferior vena cava & right phrenic nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_tendon_of_diaphragm ] ## Synonyms - * central tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58279] - * centrum tendineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58279] - * centrum tendineum diaphragmatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58279[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58279 ] + * centrum tendineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58279 ] + * centrum tendineum diaphragmatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58279, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:17702 * FMA:58279 * SCTID:244943002 - * UMLS:C0230162 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Central_Tendon_of_the_Diaphragm] + * UMLS:C0230162 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Central_Tendon_of_the_Diaphragm ] * VHOG:0001399 * Wikipedia:Central_tendon_of_diaphragm * ncithesaurus:Central_Tendon_of_the_Diaphragm @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammals, the diaphragm muscle divides the thoracoabdominal cavity into thorax and abdomen. In most mammals, the diaphragm is a flat sheet with muscle fibers radiating outward from a central tendon, and the diaphragm's apposition to the cranial surface of the liver gives it a dome-shape. Muscle fiber contraction reduces the curvature of the dome, thereby expanding the thoracic cavity and aspirating air into the lungs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006770.md b/md/UBERON/70/UBERON_0006770.md index c4da502513..b1e2b72155 100644 --- a/md/UBERON/70/UBERON_0006770.md +++ b/md/UBERON/70/UBERON_0006770.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006870.md b/md/UBERON/70/UBERON_0006870.md index f4ee4189bf..79074a3413 100644 --- a/md/UBERON/70/UBERON_0006870.md +++ b/md/UBERON/70/UBERON_0006870.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006870 * *Label* = endostyle - * *Definition* = An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endostyle] + * *Definition* = An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endostyle ] * *Comment* = Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP]. ## Synonyms - * hypopharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003173] + * hypopharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003173 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endostylar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0006970.md b/md/UBERON/70/UBERON_0006970.md index 6db1163fd4..0511d4b103 100644 --- a/md/UBERON/70/UBERON_0006970.md +++ b/md/UBERON/70/UBERON_0006970.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0007170.md b/md/UBERON/70/UBERON_0007170.md index 0c5b7ffc93..6201d4ae1b 100644 --- a/md/UBERON/70/UBERON_0007170.md +++ b/md/UBERON/70/UBERON_0007170.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007170 * *Label* = squamous part of occipital bone - * *Definition* = The squama of the occipital bone, situated above and behind the foramen magnum, is curved from above downward and from side to side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_occipitalis] + * *Definition* = The squama of the occipital bone, situated above and behind the foramen magnum, is curved from above downward and from side to side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_occipitalis ] ## Synonyms - * occipital squama [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52860] - * occipital squama [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_occipitalis] - * squama occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_occipitalis] - * squama of occipital bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52860] - * squama occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_occipitalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * occipital squama [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52860 ] + * occipital squama [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_occipitalis ] + * squama occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_occipitalis ] + * squama of occipital bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52860 ] + * squama occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_occipitalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0007270.md b/md/UBERON/70/UBERON_0007270.md index 3bc697fdd8..4e0380d640 100644 --- a/md/UBERON/70/UBERON_0007270.md +++ b/md/UBERON/70/UBERON_0007270.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007270 * *Label* = pelvic appendage musculature - * *Definition* = Any collection of muscles that is part of a pelvic appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pelvic appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pelvic fin musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000258[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * pelvic fin musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000258, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Musculature that is part of the pelvic fin.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0007770.md b/md/UBERON/70/UBERON_0007770.md index 601e1ea2be..64d869e3d8 100644 --- a/md/UBERON/70/UBERON_0007770.md +++ b/md/UBERON/70/UBERON_0007770.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007770 * *Label* = osphradium - * *Definition* = The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004995[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Osphradium] + * *Definition* = The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004995, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Osphradium ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0008270.md b/md/UBERON/70/UBERON_0008270.md index b15ebbf3dc..1cffe14b33 100644 --- a/md/UBERON/70/UBERON_0008270.md +++ b/md/UBERON/70/UBERON_0008270.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008270 * *Label* = mollusc shell - * *Definition* = a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mollusc_shell] + * *Definition* = a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mollusc_shell ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0008870.md b/md/UBERON/70/UBERON_0008870.md index fb757acb9b..30fd1e7d58 100644 --- a/md/UBERON/70/UBERON_0008870.md +++ b/md/UBERON/70/UBERON_0008870.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008870 * *Label* = pulmonary alveolar parenchyma - * *Definition* = the distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010901] + * *Definition* = the distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010901 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [alveolus of lung](../../UBERON/99/UBERON_0002299.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0009470.md b/md/UBERON/70/UBERON_0009470.md index db12ea1e87..ecbfc3524f 100644 --- a/md/UBERON/70/UBERON_0009470.md +++ b/md/UBERON/70/UBERON_0009470.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009470 * *Label* = postsphenoidal bone - * *Definition* = the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ossification_of_sphenoid#Postsphenoid[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/postsphenoid] + * *Definition* = the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ossification_of_sphenoid#Postsphenoid, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/postsphenoid ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0009570.md b/md/UBERON/70/UBERON_0009570.md index 49fc284145..a48cec9bd8 100644 --- a/md/UBERON/70/UBERON_0009570.md +++ b/md/UBERON/70/UBERON_0009570.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009570 * *Label* = spinal cord sulcus limitans - * *Definition* = A sulcus limitans of neural tube that is part of a future spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sulcus limitans of neural tube that is part of a future spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * spinal cord lateral wall sulcus limitans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001265] + * spinal cord lateral wall sulcus limitans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001265 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [future spinal cord](../../UBERON/41/UBERON_0006241.md) and [sulcus limitans of neural tube](../../UBERON/78/UBERON_0005478.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0009670.md b/md/UBERON/70/UBERON_0009670.md index 44844d5c10..9967ddbaa8 100644 --- a/md/UBERON/70/UBERON_0009670.md +++ b/md/UBERON/70/UBERON_0009670.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009670 * *Label* = rectal lumen - * *Definition* = An anatomical space that surrounded_by a rectum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that surrounded_by a rectum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumen of rectum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14598] + * lumen of rectum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14598 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [rectum](../../UBERON/52/UBERON_0001052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0009870.md b/md/UBERON/70/UBERON_0009870.md index ab60cab2ed..2e07061941 100644 --- a/md/UBERON/70/UBERON_0009870.md +++ b/md/UBERON/70/UBERON_0009870.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009870 * *Label* = zone of stomach - * *Definition* = A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomach#Sections] + * *Definition* = A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomach#Sections ] * *Comment* = Editor notes: We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach ## Synonyms - * gastric zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14558] + * gastric zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14558 ] * region of stomach * section of stomach @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0009970.md b/md/UBERON/70/UBERON_0009970.md index 1cd0bf4a8a..9289b5f3c7 100644 --- a/md/UBERON/70/UBERON_0009970.md +++ b/md/UBERON/70/UBERON_0009970.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009970 * *Label* = epithelium of pancreatic duct - * *Definition* = An epithelium that is part of a pancreatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pancreatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor note: in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses this ## Synonyms - * pancreatic duct epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67681] - * pancreatic ductal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67681] + * pancreatic duct epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67681 ] + * pancreatic ductal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67681 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pancreatic duct](../../UBERON/29/UBERON_0007329.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010070.md b/md/UBERON/70/UBERON_0010070.md index 00c0171505..223bae8f60 100644 --- a/md/UBERON/70/UBERON_0010070.md +++ b/md/UBERON/70/UBERON_0010070.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010070 * *Label* = intermediate layer of tympanic membrane - * *Definition* = The intermediate fibrous layer of the tympanic membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11237469[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376] + * *Definition* = The intermediate fibrous layer of the tympanic membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11237469, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376 ] * *Comment* = AO notes: check MA ## Synonyms - * connective tissue layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56830] - * fibrous layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56830] - * fibrous stratum of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56830] - * intermediate fibrous layer of tympanic membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56830] - * tympanic endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001223] + * connective tissue layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56830 ] + * fibrous layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56830 ] + * fibrous stratum of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56830 ] + * intermediate fibrous layer of tympanic membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56830 ] + * tympanic endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001223 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010170.md b/md/UBERON/70/UBERON_0010170.md index a0012c5693..a96516c7f0 100644 --- a/md/UBERON/70/UBERON_0010170.md +++ b/md/UBERON/70/UBERON_0010170.md @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010270.md b/md/UBERON/70/UBERON_0010270.md index 5e40cdd4f0..9587c0612f 100644 --- a/md/UBERON/70/UBERON_0010270.md +++ b/md/UBERON/70/UBERON_0010270.md @@ -6,7 +6,7 @@ ## Synonyms - * external part of filum terminale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256526] + * external part of filum terminale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256526 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010370.md b/md/UBERON/70/UBERON_0010370.md index cf46d835d8..6c973f6fc2 100644 --- a/md/UBERON/70/UBERON_0010370.md +++ b/md/UBERON/70/UBERON_0010370.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010370 * *Label* = tibial vein - * *Definition* = One of the veins of the lower leg; empty into the popliteal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/tibial+vein] + * *Definition* = One of the veins of the lower leg; empty into the popliteal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/tibial+vein ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0002243 - * UMLS:C0447138 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibial_Vein] + * UMLS:C0447138 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibial_Vein ] * ncithesaurus:Tibial_Vein ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010570.md b/md/UBERON/70/UBERON_0010570.md index 24cbeceefc..bedfeb0b29 100644 --- a/md/UBERON/70/UBERON_0010570.md +++ b/md/UBERON/70/UBERON_0010570.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010570 * *Label* = manual digit 1 metacarpus cartilage element - * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 1 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000514] - * fore limb digit 1 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 1 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000514 ] + * fore limb digit 1 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpus 1 cartilage element - * hand digit 1 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 1 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1 mesenchyme](../../UBERON/64/UBERON_0010564.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0010970.md b/md/UBERON/70/UBERON_0010970.md index 2b6dbd1069..b3bf4c0c81 100644 --- a/md/UBERON/70/UBERON_0010970.md +++ b/md/UBERON/70/UBERON_0010970.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011170.md b/md/UBERON/70/UBERON_0011170.md index e61eff4844..6d69a572d6 100644 --- a/md/UBERON/70/UBERON_0011170.md +++ b/md/UBERON/70/UBERON_0011170.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011170 * *Label* = quadrate-articular joint - * *Definition* = A skeletal joint that connects quadrate and articular bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://evolution.berkeley.edu/evolibrary/article/evograms_05[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A skeletal joint that connects quadrate and articular bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://evolution.berkeley.edu/evolibrary/article/evograms_05, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: see comments for UBERON:0004744 articular/anguloarticular. Taxon notes: over time, the synapsids' quadrate-articular jaw joint (which the rest of the tetrapods possess) was replaced by a dentary-squamosal joint (which all living mammals possess), while the quadrate and articular migrated, shrank, and became part of the complex of middle ear bones.[http://evolution.berkeley.edu/evolibrary/article/evograms_05] ## Synonyms - * quadrate-anguloarticular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005484] + * quadrate-anguloarticular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005484 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [articular/anguloarticular](../../UBERON/44/UBERON_0004744.md) and [connects](../../ts/core#connects.md) some [quadrate bone](../../UBERON/97/UBERON_0006597.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011270.md b/md/UBERON/70/UBERON_0011270.md index c6723ad632..0235a27f61 100644 --- a/md/UBERON/70/UBERON_0011270.md +++ b/md/UBERON/70/UBERON_0011270.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011270 * *Label* = dorsal trunk - * *Definition* = The part of the trunk that is in the dorsum[cjm]. In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25056[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Human_back] + * *Definition* = The part of the trunk that is in the dorsum[cjm]. In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25056, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Human_back ] ## Synonyms - * back of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25056] + * back of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25056 ] * dorsal part of trunk - * dorsum of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25056] - * trunk back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25056] + * dorsum of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25056 ] + * trunk back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25056 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011370.md b/md/UBERON/70/UBERON_0011370.md index 7a08455064..241f093d3b 100644 --- a/md/UBERON/70/UBERON_0011370.md +++ b/md/UBERON/70/UBERON_0011370.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011370 * *Label* = transverse process of atlas - * *Definition* = A transverse process of vertebra that is part of a vertebral bone 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A transverse process of vertebra that is part of a vertebral bone 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral bone 1](../../UBERON/92/UBERON_0001092.md) and [transverse process of vertebra](../../UBERON/77/UBERON_0001077.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011670.md b/md/UBERON/70/UBERON_0011670.md index 5e6b6c8b04..fb35226da3 100644 --- a/md/UBERON/70/UBERON_0011670.md +++ b/md/UBERON/70/UBERON_0011670.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011670 * *Label* = pygal plate of carapace - * *Definition* = One of three plates on the posterior end of the carapace, posterior to the neural plates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = One of three plates on the posterior end of the carapace, posterior to the neural plates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011770.md b/md/UBERON/70/UBERON_0011770.md index c3bbf7cc7c..4683ae1100 100644 --- a/md/UBERON/70/UBERON_0011770.md +++ b/md/UBERON/70/UBERON_0011770.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011770 * *Label* = mentomeckelian - * *Definition* = Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000301] + * *Definition* = Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000301 ] ## Synonyms - * Pars mentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000301] - * dentale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000301] + * Pars mentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000301 ] + * dentale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000301 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011870.md b/md/UBERON/70/UBERON_0011870.md index 0836ecae0a..6e707245de 100644 --- a/md/UBERON/70/UBERON_0011870.md +++ b/md/UBERON/70/UBERON_0011870.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0011970.md b/md/UBERON/70/UBERON_0011970.md index b053b3e021..39177aac92 100644 --- a/md/UBERON/70/UBERON_0011970.md +++ b/md/UBERON/70/UBERON_0011970.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011970 * *Label* = talofibular ligament - * *Definition* = A skeletal ligament that connects the fibula to the talus. Examples: anterior and posterior talofibular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A skeletal ligament that connects the fibula to the talus. Examples: anterior and posterior talofibular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * ligamentum talofibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talofibular_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum talofibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talofibular_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * talo-fibular ligament ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [fibula](../../UBERON/46/UBERON_0001446.md) and [connects](../../ts/core#connects.md) some [talus](../../UBERON/95/UBERON_0002395.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011970 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0012070.md b/md/UBERON/70/UBERON_0012070.md index df4175c322..65ee28c766 100644 --- a/md/UBERON/70/UBERON_0012070.md +++ b/md/UBERON/70/UBERON_0012070.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012070 * *Label* = palatal tooth - * *Definition* = A tooth that is on the roof of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/therapsida/anteosauria.html] + * *Definition* = A tooth that is on the roof of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/therapsida/anteosauria.html ] ## Synonyms - * palatal teeth [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * palatal teeth [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [palate bone](../../UBERON/71/UBERON_0012071.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0012170.md b/md/UBERON/70/UBERON_0012170.md index a9a8069548..2b357d0037 100644 --- a/md/UBERON/70/UBERON_0012170.md +++ b/md/UBERON/70/UBERON_0012170.md @@ -6,12 +6,12 @@ ## Synonyms - * core of nucleus accumbens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090306] - * core region of nucleus accumbens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77383] - * nucleus accumbens core [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090306] - * accumbens nucleus core [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AcbC] - * accumbens nucleus, core [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AcbC] - * nucleusa ccumbens core [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ACBc] + * core of nucleus accumbens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090306 ] + * core region of nucleus accumbens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77383 ] + * nucleus accumbens core [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090306 ] + * accumbens nucleus core [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AcbC ] + * accumbens nucleus, core [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AcbC ] + * nucleusa ccumbens core [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ACBc ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0012270.md b/md/UBERON/70/UBERON_0012270.md index 9af0a3dc0f..aeb01a5550 100644 --- a/md/UBERON/70/UBERON_0012270.md +++ b/md/UBERON/70/UBERON_0012270.md @@ -7,8 +7,8 @@ ## Synonyms * forestomach - glandular stomach squamocolumnar junction - * limiting ridge of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0008827] - * margo plicatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:0008827] + * limiting ridge of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0008827 ] + * margo plicatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:0008827 ] * squamo-columnar junction between forestomach and glandular stomach * squamocolumnar junction with the glandular stomach @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012270 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0012470.md b/md/UBERON/70/UBERON_0012470.md index 490f7470be..ded583acf8 100644 --- a/md/UBERON/70/UBERON_0012470.md +++ b/md/UBERON/70/UBERON_0012470.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0013070.md b/md/UBERON/70/UBERON_0013070.md index 8a4b34cc3f..e9c3969103 100644 --- a/md/UBERON/70/UBERON_0013070.md +++ b/md/UBERON/70/UBERON_0013070.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013070 * *Label* = prepatagium - * *Definition* = a roughly triangular flap of skin on the wing of a bird or pterosaur which fills the space bounded by the humerus and ulna. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryPo.html] + * *Definition* = a roughly triangular flap of skin on the wing of a bird or pterosaur which fills the space bounded by the humerus and ulna. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryPo.html ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013070 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0013170.md b/md/UBERON/70/UBERON_0013170.md index 47ce2e054c..8b7c14a30a 100644 --- a/md/UBERON/70/UBERON_0013170.md +++ b/md/UBERON/70/UBERON_0013170.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013170 * *Label* = cricoarytenoid ligament - * *Definition* = Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_ligament] + * *Definition* = Laryngeal ligament that connects the cricoid and arytenoid cartilages[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_ligament ] ## Synonyms - * crico-arytenoid ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55261] - * ligamentum cricoaryteneoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoarytenoid_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * crico-arytenoid ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55261 ] + * ligamentum cricoaryteneoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoarytenoid_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [arytenoid cartilage](../../UBERON/40/UBERON_0001740.md) and [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013170 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0013670.md b/md/UBERON/70/UBERON_0013670.md index 1b00cbe8f1..e36f3ed3bc 100644 --- a/md/UBERON/70/UBERON_0013670.md +++ b/md/UBERON/70/UBERON_0013670.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0013770.md b/md/UBERON/70/UBERON_0013770.md index febfa15d52..e1cf61dd4f 100644 --- a/md/UBERON/70/UBERON_0013770.md +++ b/md/UBERON/70/UBERON_0013770.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0014370.md b/md/UBERON/70/UBERON_0014370.md index 54bb5cc9b6..a3d49d6e00 100644 --- a/md/UBERON/70/UBERON_0014370.md +++ b/md/UBERON/70/UBERON_0014370.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014370 * *Label* = extrastriate cortex - * *Definition* = A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_200905010] + * *Definition* = A group of cortical areas related by direct or indirect connectivity to the striate area 17 and functionally involved primarily in vision. They include the parastriate area 18, the peristriate area 19 and adjacent areas in the parietal lobe and temporal lobe (Adapted from BrainInfo and Zilles-1990). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_200905010 ] ## Synonyms - * extrastriate areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_200905010] - * extrastriate cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_200905010] - * extrastriate areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_200905010] + * extrastriate areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_200905010 ] + * extrastriate cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_200905010 ] + * extrastriate areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_200905010 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[contributor](../../or/contributor.md)* = Maryann Martone - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014370 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0014570.md b/md/UBERON/70/UBERON_0014570.md index c382ab4132..f0cc9de13f 100644 --- a/md/UBERON/70/UBERON_0014570.md +++ b/md/UBERON/70/UBERON_0014570.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014570 * *Label* = CA1 alveus - * *Definition* = CA1 portion of the alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005038] + * *Definition* = CA1 portion of the alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005038 ] ## Synonyms - * CA2 alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] + * CA2 alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014570 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0014670.md b/md/UBERON/70/UBERON_0014670.md index 1c57e18e82..472f9f5f9f 100644 --- a/md/UBERON/70/UBERON_0014670.md +++ b/md/UBERON/70/UBERON_0014670.md @@ -6,7 +6,7 @@ ## Synonyms - * distal interphalangeal joint of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35340] + * distal interphalangeal joint of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35340 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014670 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0014770.md b/md/UBERON/70/UBERON_0014770.md index 6733918c66..c00c4b3faf 100644 --- a/md/UBERON/70/UBERON_0014770.md +++ b/md/UBERON/70/UBERON_0014770.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014770 * *Label* = palpebral artery - * *Definition* = An artery that supplies blood to an eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An artery that supplies blood to an eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014770 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_0014870.md b/md/UBERON/70/UBERON_0014870.md index d87f23af88..fb9ceffb21 100644 --- a/md/UBERON/70/UBERON_0014870.md +++ b/md/UBERON/70/UBERON_0014870.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014870 * *Label* = inferior orbital fissure - * *Definition* = The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/orbital%20fissure] + * *Definition* = The orbital fissure that is situated inferiorly between the greater wing of the sphenoid bone and the maxilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/orbital%20fissure ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014870 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2000070.md b/md/UBERON/70/UBERON_2000070.md index fde191d90b..44985a154c 100644 --- a/md/UBERON/70/UBERON_2000070.md +++ b/md/UBERON/70/UBERON_2000070.md @@ -28,8 +28,10 @@ Seems out of scope for uberon and/or not very useful as a class. ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/70/UBERON_2000770.md b/md/UBERON/70/UBERON_2000770.md index a8246c9f5c..480a0aaeb3 100644 --- a/md/UBERON/70/UBERON_2000770.md +++ b/md/UBERON/70/UBERON_2000770.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000770 * *Label* = hypaxial region somite 2 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2000870.md b/md/UBERON/70/UBERON_2000870.md index 705214a7d1..b07fec404c 100644 --- a/md/UBERON/70/UBERON_2000870.md +++ b/md/UBERON/70/UBERON_2000870.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000870 * *Label* = epaxial region somite 26 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2000970.md b/md/UBERON/70/UBERON_2000970.md index 89a0ab5cf9..996362f779 100644 --- a/md/UBERON/70/UBERON_2000970.md +++ b/md/UBERON/70/UBERON_2000970.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 26 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000970[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 26 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000970, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/70/UBERON_2001170.md b/md/UBERON/70/UBERON_2001170.md index f166443949..bf9f9fa5b8 100644 --- a/md/UBERON/70/UBERON_2001170.md +++ b/md/UBERON/70/UBERON_2001170.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001170 * *Label* = vertebral element 4 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 4 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2001470.md b/md/UBERON/70/UBERON_2001470.md index 6263b65195..0ca2e8aa4c 100644 --- a/md/UBERON/70/UBERON_2001470.md +++ b/md/UBERON/70/UBERON_2001470.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001470 * *Label* = anterior lateral line - * *Definition* = The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lateral line](../../UBERON/02/UBERON_0010202.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior lateral line system](../../UBERON/68/UBERON_2001468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001470 + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2001570.md b/md/UBERON/70/UBERON_2001570.md index 23e30b1b25..d6628ebe6b 100644 --- a/md/UBERON/70/UBERON_2001570.md +++ b/md/UBERON/70/UBERON_2001570.md @@ -6,7 +6,7 @@ ## Synonyms - * activated oocyte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001570] + * activated oocyte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001570 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000025 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/70/UBERON_2001770.md b/md/UBERON/70/UBERON_2001770.md index 00ed02b0cc..407911e25a 100644 --- a/md/UBERON/70/UBERON_2001770.md +++ b/md/UBERON/70/UBERON_2001770.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2001870.md b/md/UBERON/70/UBERON_2001870.md index 701270e527..0433cecfbf 100644 --- a/md/UBERON/70/UBERON_2001870.md +++ b/md/UBERON/70/UBERON_2001870.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001870 * *Label* = supraneural 3 cartilage - * *Definition* = Postcranial axial cartilage located dorsal to vertebrae 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcranial axial cartilage located dorsal to vertebrae 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2002070.md b/md/UBERON/70/UBERON_2002070.md index 1872f0feb8..b1b1bde60a 100644 --- a/md/UBERON/70/UBERON_2002070.md +++ b/md/UBERON/70/UBERON_2002070.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002070 * *Label* = internal anterior process of basipterygium - * *Definition* = Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * internal anterior arm of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002070] - * internal arm of the basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002070] - * mesial anterior arm of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002070] - * mesial anterior process of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002070] + * internal anterior arm of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002070 ] + * internal arm of the basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002070 ] + * mesial anterior arm of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002070 ] + * mesial anterior process of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002070 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2002270.md b/md/UBERON/70/UBERON_2002270.md index f8c8dd9bb8..7ad1e37c5c 100644 --- a/md/UBERON/70/UBERON_2002270.md +++ b/md/UBERON/70/UBERON_2002270.md @@ -6,7 +6,7 @@ ## Synonyms - * pelvic spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002270] + * pelvic spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002270 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2005170.md b/md/UBERON/70/UBERON_2005170.md index 6a8e533be8..9f84749f19 100644 --- a/md/UBERON/70/UBERON_2005170.md +++ b/md/UBERON/70/UBERON_2005170.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005170 * *Label* = extrahepatic duct - * *Definition* = Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2005270.md b/md/UBERON/70/UBERON_2005270.md index 5697c1b077..ec28fdb0d9 100644 --- a/md/UBERON/70/UBERON_2005270.md +++ b/md/UBERON/70/UBERON_2005270.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005270 * *Label* = depressor muscle - * *Definition* = A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_2005370.md b/md/UBERON/70/UBERON_2005370.md index 7e141f6a96..a07e70b862 100644 --- a/md/UBERON/70/UBERON_2005370.md +++ b/md/UBERON/70/UBERON_2005370.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3000170.md b/md/UBERON/70/UBERON_3000170.md index fddc8b9dc3..091b129986 100644 --- a/md/UBERON/70/UBERON_3000170.md +++ b/md/UBERON/70/UBERON_3000170.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3000570.md b/md/UBERON/70/UBERON_3000570.md index 30929f9953..ad4b9f248c 100644 --- a/md/UBERON/70/UBERON_3000570.md +++ b/md/UBERON/70/UBERON_3000570.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3000670.md b/md/UBERON/70/UBERON_3000670.md index ab5a462dfd..2e415a89b1 100644 --- a/md/UBERON/70/UBERON_3000670.md +++ b/md/UBERON/70/UBERON_3000670.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3000870.md b/md/UBERON/70/UBERON_3000870.md index 731c05d4ca..dbc0cfc4dd 100644 --- a/md/UBERON/70/UBERON_3000870.md +++ b/md/UBERON/70/UBERON_3000870.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000870 * *Label* = preacetabular expansion - * *Definition* = Ventral portion of the ilial corpus, located anteroventral to the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ventral portion of the ilial corpus, located anteroventral to the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pars descendens ilei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000870] - * ventral acetabular expansion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000870] + * pars descendens ilei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000870 ] + * ventral acetabular expansion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000870 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3010070.md b/md/UBERON/70/UBERON_3010070.md index d21ffa6a1a..d50df4e506 100644 --- a/md/UBERON/70/UBERON_3010070.md +++ b/md/UBERON/70/UBERON_3010070.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010070 * *Label* = M. ileo-fibularis - * *Definition* = Originates from the ventral border of the ala ossis ilei just posterior to the origin of M. glutaeus maximus. Insterts in the aponeurosis covering the knee joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the ventral border of the ala ossis ilei just posterior to the origin of M. glutaeus maximus. Insterts in the aponeurosis covering the knee joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3010170.md b/md/UBERON/70/UBERON_3010170.md index b1387b0e78..467b081ef2 100644 --- a/md/UBERON/70/UBERON_3010170.md +++ b/md/UBERON/70/UBERON_3010170.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_3010770.md b/md/UBERON/70/UBERON_3010770.md index 4b0b65cbba..d178078b12 100644 --- a/md/UBERON/70/UBERON_3010770.md +++ b/md/UBERON/70/UBERON_3010770.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_4000070.md b/md/UBERON/70/UBERON_4000070.md index f03064131f..ee702e1c6a 100644 --- a/md/UBERON/70/UBERON_4000070.md +++ b/md/UBERON/70/UBERON_4000070.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000070 * *Label* = elasmoid scale - * *Definition* = Multi-tissue integumentary element composed dentine, elasmodine, and hypermineralized tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Multi-tissue integumentary element composed dentine, elasmodine, and hypermineralized tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_4000170.md b/md/UBERON/70/UBERON_4000170.md index ff66d87a13..5c34af6b68 100644 --- a/md/UBERON/70/UBERON_4000170.md +++ b/md/UBERON/70/UBERON_4000170.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000170 * *Label* = median fin skeleton - * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * axial fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000170] - * unpaired fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000170] + * axial fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000170 ] + * unpaired fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000170 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_4200070.md b/md/UBERON/70/UBERON_4200070.md index bf68be3b93..82697a3cf0 100644 --- a/md/UBERON/70/UBERON_4200070.md +++ b/md/UBERON/70/UBERON_4200070.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/70/UBERON_4200170.md b/md/UBERON/70/UBERON_4200170.md index 95c98bca79..ce8cc41273 100644 --- a/md/UBERON/70/UBERON_4200170.md +++ b/md/UBERON/70/UBERON_4200170.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0000071.md b/md/UBERON/71/UBERON_0000071.md index 8626721163..58633b7e78 100644 --- a/md/UBERON/71/UBERON_0000071.md +++ b/md/UBERON/71/UBERON_0000071.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000071 * *Label* = death stage - * *Definition* = End of the life of an organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000437] + * *Definition* = End of the life of an organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000437 ] * *Comment* = AO notes - ncit:Death is an outcome ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0000171.md b/md/UBERON/71/UBERON_0000171.md index 0e4f31e0c8..c34302f601 100644 --- a/md/UBERON/71/UBERON_0000171.md +++ b/md/UBERON/71/UBERON_0000171.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000171 * *Label* = respiration organ - * *Definition* = Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007585] + * *Definition* = Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007585 ] ## Synonyms - * apparatus respiratorius organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * breathing organ - * organ of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * organ of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * respiratory organ - * respiratory system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * respiratory system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * gas exchange organ ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [respiratory gaseous exchange](../../GO/85/GO_0007585.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0000371.md b/md/UBERON/71/UBERON_0000371.md index 4fbdd9c3ff..e1958dd51d 100644 --- a/md/UBERON/71/UBERON_0000371.md +++ b/md/UBERON/71/UBERON_0000371.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000371 * *Label* = syncytiotrophoblast - * *Definition* = extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Syncytiotrophoblast[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://embryology.med.unsw.edu.au/Notes/placenta5.htm] + * *Definition* = extraembryonic cells of trophoblastic shell surrounding embryo, outside the cytotrophoblast layer, involved with implantation of the blastocyst by eroding extracellular matrix surrounding maternal endometrial cells at site of implantation, also contribute to villi. (dark staining, multinucleated). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Syncytiotrophoblast, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://embryology.med.unsw.edu.au/Notes/placenta5.htm ] ## Synonyms - * syncytial trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83040] - * syntrophoblast layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * syncytial trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83040 ] + * syntrophoblast layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * syncitiotrophoblast - * syncitiotrophoblastus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Syncytiotrophoblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * syncitiotrophoblastus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Syncytiotrophoblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * syntrophoblast ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:16068 * FMA:83040 * SCTID:256965005 - * UMLS:C1135936 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Syncytiotrophoblast] + * UMLS:C1135936 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Syncytiotrophoblast ] * Wikipedia:Syncytiotrophoblast * http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png * ncithesaurus:Syncytiotrophoblast @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0000471.md b/md/UBERON/71/UBERON_0000471.md index 3404b77f80..f4ca0a824e 100644 --- a/md/UBERON/71/UBERON_0000471.md +++ b/md/UBERON/71/UBERON_0000471.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000471 * *Label* = compound organ component - * *Definition* = Multi-tissue structure that is part of a compound organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000019[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Multi-tissue structure that is part of a compound organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000019, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0000971.md b/md/UBERON/71/UBERON_0000971.md index 275d085815..b1f999a932 100644 --- a/md/UBERON/71/UBERON_0000971.md +++ b/md/UBERON/71/UBERON_0000971.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000971 * *Label* = ommatidium - * *Definition* = One of the small facets of the compound eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ommatidium] + * *Definition* = One of the small facets of the compound eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ommatidium ] ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ommatidial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001071.md b/md/UBERON/71/UBERON_0001071.md index 3cf892aa79..2bcc890656 100644 --- a/md/UBERON/71/UBERON_0001071.md +++ b/md/UBERON/71/UBERON_0001071.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001071 * *Label* = superficial cervical artery - * *Definition* = It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery. . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_part_of_transverse_cervical_artery] + * *Definition* = It ascends beneath the anterior margin of the trapezius, distributing branches to it, and to the neighboring muscles and lymph glands in the neck, and anastomosing with the superficial branch of the descending branch of the occipital artery. . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_part_of_transverse_cervical_artery ] * *Comment* = The transverse cervical artery splits into two branches, a superficial one and a deep one[WP] ## Synonyms - * superficial branch of transverse cervical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_part_of_transverse_cervical_artery] + * superficial branch of transverse cervical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_part_of_transverse_cervical_artery ] ## Cross-references * FMA:10665 * MA:0002052 * SCTID:161746006 - * UMLS:C0226271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superficial_Cervical_Artery] + * UMLS:C0226271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superficial_Cervical_Artery ] * Wikipedia:Superficial_part_of_transverse_cervical_artery * ncithesaurus:Superficial_Cervical_Artery @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001171.md b/md/UBERON/71/UBERON_0001171.md index c86eef495a..cb4fdcc2fb 100644 --- a/md/UBERON/71/UBERON_0001171.md +++ b/md/UBERON/71/UBERON_0001171.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001171 * *Label* = portal lobule - * *Definition* = the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008992] + * *Definition* = the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008992 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,7 +13,7 @@ * FMA:14653 * MA:0002498 - * UMLS:C0682620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Portal_Lobule] + * UMLS:C0682620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Portal_Lobule ] * ncithesaurus:Portal_Lobule ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001271.md b/md/UBERON/71/UBERON_0001271.md index f7dd2e53e3..8522d23a9f 100644 --- a/md/UBERON/71/UBERON_0001271.md +++ b/md/UBERON/71/UBERON_0001271.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001271 * *Label* = pelvic girdle region - * *Definition* = Subdivision of lower limb or fin which links the paired limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16581[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion] + * *Definition* = Subdivision of lower limb or fin which links the paired limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16581, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion ] * *Comment* = Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list ## Synonyms * girdle - pelvic - * pelvic girdle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pelvic girdle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references * FMA:16581 * SCTID:360010001 - * UMLS:C0684083 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pelvic_Girdle] + * UMLS:C0684083 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pelvic_Girdle ] * VSAO:0000304 * ncithesaurus:Pelvic_Girdle @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [appendage girdle region](../../UBERON/23/UBERON_0007823.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. There is only one instance of the pelvic girdle region per organism.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001371.md b/md/UBERON/71/UBERON_0001371.md index 509f6ff579..8fc881ad57 100644 --- a/md/UBERON/71/UBERON_0001371.md +++ b/md/UBERON/71/UBERON_0001371.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001371 * *Label* = gluteus medius - * *Definition* = The gluteus medius (or glutus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_medius_muscle] + * *Definition* = The gluteus medius (or glutus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_medius_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * gluteus medius muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_medius_muscle] - * musculus gluteus medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_medius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus gluteus medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gluteus_medius_muscle] + * gluteus medius muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_medius_muscle ] + * musculus gluteus medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_medius_muscle ] + * musculus gluteus medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gluteus_medius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:22315 * MA:0002310 * SCTID:181675000 - * UMLS:C0224425 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gluteus_Medius] + * UMLS:C0224425 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gluteus_Medius ] * Wikipedia:Gluteus_medius_muscle * galen:GluteusMedius * http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001471.md b/md/UBERON/71/UBERON_0001471.md index cf8171f7bf..b3493eb662 100644 --- a/md/UBERON/71/UBERON_0001471.md +++ b/md/UBERON/71/UBERON_0001471.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001471 * *Label* = skin of prepuce of penis - * *Definition* = A zone of skin that is part of a prepuce of penis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a prepuce of penis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * foreskin of penis - * foreskin zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * penile prepuce zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foreskin zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * penile prepuce zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * penis foreskin - * prepuce of penis zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prepuce zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * prepuce of penis zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prepuce zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * preputial skin - * zone of skin of foreskin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of penile prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of prepuce [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of prepuce of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * zone of skin of foreskin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of penile prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of prepuce [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of prepuce of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [prepuce of penis](../../UBERON/32/UBERON_0001332.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001571.md b/md/UBERON/71/UBERON_0001571.md index 01771b6a15..fc032943b5 100644 --- a/md/UBERON/71/UBERON_0001571.md +++ b/md/UBERON/71/UBERON_0001571.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001571 * *Label* = genioglossus muscle - * *Definition* = Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000847[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Genioglossus_muscle] + * *Definition* = Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000847, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Genioglossus_muscle ] * *Comment* = taxon notes: Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians. [AAO:0010660] ## Synonyms @@ -22,7 +22,7 @@ * FMA:46690 * MA:0002307 * SCTID:244784007 - * UMLS:C0224194 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Genioglossus] + * UMLS:C0224194 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Genioglossus ] * VHOG:0000847 * Wikipedia:Genioglossus_muscle * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png @@ -54,8 +54,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001671.md b/md/UBERON/71/UBERON_0001671.md index c916c46240..677fc02126 100644 --- a/md/UBERON/71/UBERON_0001671.md +++ b/md/UBERON/71/UBERON_0001671.md @@ -12,7 +12,7 @@ * FMA:51302 * MA:0002239 - * UMLS:C0924206 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Vein] + * UMLS:C0924206 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Vein ] * Wikipedia:Temporal_vein * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png * ncithesaurus:Temporal_Vein @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001771.md b/md/UBERON/71/UBERON_0001771.md index cb5877cd91..efa06edeb8 100644 --- a/md/UBERON/71/UBERON_0001771.md +++ b/md/UBERON/71/UBERON_0001771.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001771 * *Label* = pupil - * *Definition* = sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pupil] + * *Definition* = sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pupil ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -19,7 +19,7 @@ * OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA * SCTID:35146001 * TAO:0001283 - * UMLS:C0034121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pupil] + * UMLS:C0034121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pupil ] * VHOG:0000116 * Wikipedia:Pupil * XAO:0000283 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The circular orifice in the centre of the iris, through which light enters into the eye. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001871.md b/md/UBERON/71/UBERON_0001871.md index 8c9be226c3..a292031a01 100644 --- a/md/UBERON/71/UBERON_0001871.md +++ b/md/UBERON/71/UBERON_0001871.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001871 * *Label* = temporal lobe - * *Definition* = Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_lobe] + * *Definition* = Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_lobe ] ## Synonyms * temporal cortex - * temporal neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:TCx] - * lobus temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * temporal neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:TCx ] + * lobus temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,12 +27,12 @@ * MAT:0000508 * MESH:A08.186.211.730.885.213.863 * NIF_GrossAnatomy:birnlex_1160 - * NeuroNames:125 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1160] + * NeuroNames:125 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1160 ] * OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA * SCTID:180921000 - * UMLS:C0039485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1160] - * UMLS:C0039485 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Lobe] - * UMLS:C1268978 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1160] + * UMLS:C0039485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1160 ] + * UMLS:C0039485 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Lobe ] + * UMLS:C1268978 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1160 ] * Wikipedia:Temporal_lobe * http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray730.png/200px-Gray730.png @@ -57,8 +57,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0001971.md b/md/UBERON/71/UBERON_0001971.md index d90f32583b..274cbd174d 100644 --- a/md/UBERON/71/UBERON_0001971.md +++ b/md/UBERON/71/UBERON_0001971.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001971 * *Label* = gastric juice - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_juice] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_juice ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * stomach secretion - * succus gastricus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000501] + * succus gastricus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000501 ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:1160 * MA:0002519 * MESH:A12.200.307 - * UMLS:C0017133 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Secretion] + * UMLS:C0017133 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Secretion ] * Wikipedia:Gastric_juice * galen:GastricJuice * ncithesaurus:Gastric_Secretion @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002071.md b/md/UBERON/71/UBERON_0002071.md index 9a67eb1adf..cf608b0b3a 100644 --- a/md/UBERON/71/UBERON_0002071.md +++ b/md/UBERON/71/UBERON_0002071.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002071 * *Label* = stratum lucidum of epidermis - * *Definition* = the layer of lightly staining corneocytes found between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009610[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratum_lucidum] + * *Definition* = the layer of lightly staining corneocytes found between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009610, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratum_lucidum ] * *Comment* = Located between the stratum granulosum and stratum corneum layers, it is composed of three to five layers of dead, flattened keratinocytes. The keratinocytes of the stratum lucidum do not feature distinct boundaries and are filled with eleidin, an intermediate form of keratin. ## Synonyms * epidermis stratum lucidum * stratum conjunctum of epidermis - * stratum lucidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000364] + * stratum lucidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000364 ] ## Cross-references @@ -19,8 +19,8 @@ * MA:0000806 * NeuroNames:1777 * SCTID:419156002 - * UMLS:C0221922 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Lucidum] - * UMLS:C1514985 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Conjunctum] + * UMLS:C0221922 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Lucidum ] + * UMLS:C1514985 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Conjunctum ] * Wikipedia:Stratum_lucidum * ncithesaurus:Stratum_Conjunctum * ncithesaurus:Stratum_Lucidum @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002171.md b/md/UBERON/71/UBERON_0002171.md index 1706d8e5c5..90e6f13a9c 100644 --- a/md/UBERON/71/UBERON_0002171.md +++ b/md/UBERON/71/UBERON_0002171.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002171 * *Label* = lower lobe of right lung - * *Definition* = The lobe of the right lung that is furtherst from the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The lobe of the right lung that is furtherst from the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * inferior lobe of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7337] - * lobus inferior pulmonis dextri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7337[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lower lobe of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:LowerLobeOfRightLung] + * inferior lobe of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7337 ] + * lobus inferior pulmonis dextri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7337, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lower lobe of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:LowerLobeOfRightLung ] * right caudal lobe of lung - * right lower lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7337] - * right lower lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7337] - * right lung caudal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000428] - * right lung inferior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000428] + * right lower lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7337 ] + * right lower lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7337 ] + * right lung caudal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000428 ] + * right lung inferior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000428 ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:7337 * MA:0000428 * SCTID:361976007 - * UMLS:C1261075 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Lobe_of_the_Right_Lung] + * UMLS:C1261075 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Lobe_of_the_Right_Lung ] * VHOG:0000857 * galen:LowerLobeOfRightLung * ncithesaurus:Lower_Lobe_of_the_Right_Lung @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lower lobe of lung](../../UBERON/49/UBERON_0008949.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002271.md b/md/UBERON/71/UBERON_0002271.md index 9cdf8eea9d..c15c4b7ff6 100644 --- a/md/UBERON/71/UBERON_0002271.md +++ b/md/UBERON/71/UBERON_0002271.md @@ -8,7 +8,7 @@ ## Synonyms * hypothalamus periventricular zone - * Periventricular zone of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVZ] + * Periventricular zone of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVZ ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002371.md b/md/UBERON/71/UBERON_0002371.md index c948a2977e..76003a55f6 100644 --- a/md/UBERON/71/UBERON_0002371.md +++ b/md/UBERON/71/UBERON_0002371.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002371 * *Label* = bone marrow - * *Definition* = flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow] + * *Definition* = flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow ] * *Comment* = TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs ## Synonyms @@ -12,9 +12,9 @@ * head kidney * anterior kidney * kidney marrow - * medulla of bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000141] - * medulla ossium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000141] - * medulla ossium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medulla of bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000141 ] + * medulla ossium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000141 ] + * medulla ossium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,7 +33,7 @@ * MIAA:0000084 * OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA * SCTID:421320006 - * UMLS:C0005953 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_Marrow] + * UMLS:C0005953 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_Marrow ] * VHOG:0001218 * Wikipedia:Bone_marrow * XAO:0000123 @@ -64,8 +64,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The bone marrow is the hematopoietic organ in all vertebrates but fishes, in which hematopoiesis occurs in the kidney.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002471.md b/md/UBERON/71/UBERON_0002471.md index f2a28776c0..b3681d0162 100644 --- a/md/UBERON/71/UBERON_0002471.md +++ b/md/UBERON/71/UBERON_0002471.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002471 * *Label* = zeugopod - * *Definition* = The middle free limb segment, between the autopod and stylopod segments. Includes as parts the zeugopodial skeleton. Examples: There are two types of zeugopod: forelimb zeugopod (aka forearm), hindlimb zeugopod (aka crus). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:curators] + * *Definition* = The middle free limb segment, between the autopod and stylopod segments. Includes as parts the zeugopodial skeleton. Examples: There are two types of zeugopod: forelimb zeugopod (aka forearm), hindlimb zeugopod (aka crus). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:curators ] * *Comment* = There exists some controversy about which podial segments are present in some fishes, e.g. if the autopod is not newly evolved in tetrapods, there is a question as to which segments are actually present in basal vertebrate taxa.[PHENOSCAPE:curators] ## Synonyms - * epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * middle free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83016] + * epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * middle free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83016 ] * middle limb segment - * zeugopod limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * zeugopodial limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * zeugopod limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * zeugopodial limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] * zeugopodium * zygopod * zygopodium * middle part of limb - * middle segment of free limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83016] + * middle segment of free limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83016 ] ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = zeugopodial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002571.md b/md/UBERON/71/UBERON_0002571.md index 5f978b2f6a..50c853da77 100644 --- a/md/UBERON/71/UBERON_0002571.md +++ b/md/UBERON/71/UBERON_0002571.md @@ -6,12 +6,12 @@ ## Synonyms - * Inferior colliculus external nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICe] - * external cortex of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:478] - * external nucleus of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:478] - * inferior colliculus external nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICe] - * inferior colliculus, external nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:478] - * nucleus externus (colliculi inferioris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:478[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Inferior colliculus external nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICe ] + * external cortex of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:478 ] + * external nucleus of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:478 ] + * inferior colliculus external nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICe ] + * inferior colliculus, external nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:478 ] + * nucleus externus (colliculi inferioris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:478, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,8 +21,8 @@ * BM:MB-Tec-ICX * FMA:72412 * NIF_GrossAnatomy:birnlex_1047 - * NeuroNames:478 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1047] - * UMLS:C0175370 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1047] + * NeuroNames:478 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1047 ] + * UMLS:C0175370 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1047 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002671.md b/md/UBERON/71/UBERON_0002671.md index 5bdb05a739..e63deb35e9 100644 --- a/md/UBERON/71/UBERON_0002671.md +++ b/md/UBERON/71/UBERON_0002671.md @@ -6,19 +6,19 @@ ## Synonyms - * pallidotegmental tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72458] - * ptf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1331[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus pallido-tegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:530[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae pallidoolivares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:530[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pallidotegmental fascicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:530] + * pallidotegmental tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72458 ] + * ptf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1331, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus pallido-tegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:530, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae pallidoolivares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:530, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pallidotegmental fascicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:530 ] ## Cross-references * BAMS:ptf * FMA:72458 * NIF_GrossAnatomy:birnlex_1331 - * NeuroNames:530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1331] - * UMLS:C0175407 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1331] + * NeuroNames:530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1331 ] + * UMLS:C0175407 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1331 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002771.md b/md/UBERON/71/UBERON_0002771.md index 5869af87d6..0dcee80950 100644 --- a/md/UBERON/71/UBERON_0002771.md +++ b/md/UBERON/71/UBERON_0002771.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002771 * *Label* = middle temporal gyrus - * *Definition* = Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_temporal_gyrus] + * *Definition* = Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_temporal_gyrus ] ## Synonyms - * gyrus temporalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1653] - * intermediate temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61906] - * inferior temporal gyrus (Seltzer) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:137] - * medial temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_temporal_gyrus] - * middle (medial) temporal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MTG] + * gyrus temporalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1653 ] + * intermediate temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61906 ] + * inferior temporal gyrus (Seltzer) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:137 ] + * medial temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_temporal_gyrus ] + * middle (medial) temporal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MTG ] ## Cross-references @@ -19,9 +19,9 @@ * EFO:0002466 * FMA:61906 * NIF_GrossAnatomy:birnlex_1653 - * NeuroNames:137 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1653] + * NeuroNames:137 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1653 ] * SCTID:279190006 - * UMLS:C0152310 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1653] + * UMLS:C0152310 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1653 ] * Wikipedia:Middle_temporal_gyrus * http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002871.md b/md/UBERON/71/UBERON_0002871.md index 435cffb8d2..8491f650f9 100644 --- a/md/UBERON/71/UBERON_0002871.md +++ b/md/UBERON/71/UBERON_0002871.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002871 * *Label* = hypoglossal nucleus - * *Definition* = The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoglossal_nucleus] + * *Definition* = The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoglossal_nucleus ] ## Synonyms - * hypoglossal XII nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001039] - * hypoglossal nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54505] - * hypoglossal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54505] - * nucleus nervi hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54505[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of hypoglossal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54505] - * twelfth cranial nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54505] - * nucleus hypoglossalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:757[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoglossal_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * hypoglossal XII nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001039 ] + * hypoglossal nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54505 ] + * hypoglossal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54505 ] + * nucleus nervi hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54505, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of hypoglossal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54505 ] + * twelfth cranial nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54505 ] + * nucleus hypoglossalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:757, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoglossal_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,10 +28,10 @@ * FMA:54505 * MA:0001039 * NIF_GrossAnatomy:birnlex_2644 - * NeuroNames:757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2644] + * NeuroNames:757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2644 ] * SCTID:47361005 - * UMLS:C0228802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2644] - * UMLS:C0228802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypoglossal_Nucleus] + * UMLS:C0228802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2644 ] + * UMLS:C0228802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypoglossal_Nucleus ] * VHOG:0001358 * Wikipedia:Hypoglossal_nucleus * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png @@ -58,8 +58,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0002971.md b/md/UBERON/71/UBERON_0002971.md index f0c393fad8..09f7fec611 100644 --- a/md/UBERON/71/UBERON_0002971.md +++ b/md/UBERON/71/UBERON_0002971.md @@ -6,13 +6,13 @@ ## Synonyms - * dorsal periolivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72475] - * nuclei periolivares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72475[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * peri-olivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72475] - * nucleus periolivaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:574[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * periolivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:POR] - * periolivary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:POR] - * superior olivary complex periolivary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:POR] + * dorsal periolivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72475 ] + * nuclei periolivares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72475, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * peri-olivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72475 ] + * nucleus periolivaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:574, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * periolivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:POR ] + * periolivary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:POR ] + * superior olivary complex periolivary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:POR ] ## Cross-references @@ -21,8 +21,8 @@ * FMA:72475 * MA:0002757 * NIF_GrossAnatomy:birnlex_804 - * NeuroNames:574 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_804] - * UMLS:C0175432 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_804] + * NeuroNames:574 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_804 ] + * UMLS:C0175432 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_804 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003071.md b/md/UBERON/71/UBERON_0003071.md index 07f136b893..b7dd97514e 100644 --- a/md/UBERON/71/UBERON_0003071.md +++ b/md/UBERON/71/UBERON_0003071.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003071 * *Label* = eye primordium - * *Definition* = Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0046619[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000570] + * *Definition* = Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0046619, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000570 ] * *Comment* = AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium. ## Synonyms - * eye placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * eye placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * occular primordium * ocular primordium - * optic placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0046619] - * optic placode of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0046619[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * optic placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0046619 ] + * optic placode of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0046619, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * optic primordium - * eye anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000227] + * eye anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000227 ] * eye field * optic field - * optic placodes [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * optic placodes [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005060 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003171.md b/md/UBERON/71/UBERON_0003171.md index cc84b1fbd0..581bea08a7 100644 --- a/md/UBERON/71/UBERON_0003171.md +++ b/md/UBERON/71/UBERON_0003171.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004554 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000303 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003171 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/71/UBERON_0003371.md b/md/UBERON/71/UBERON_0003371.md index defb9be338..cf7c014d01 100644 --- a/md/UBERON/71/UBERON_0003371.md +++ b/md/UBERON/71/UBERON_0003371.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003371 * *Label* = pelvic appendage bud ectoderm - * *Definition* = An unilaminar epithelium that surrounds a pelvic appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An unilaminar epithelium that surrounds a pelvic appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindlimb ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001048] - * hindlimb bud ectoderm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hindlimb ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001048[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lower limb bud ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001034[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pelvic fin bud ectoderm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * leg ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hindlimb ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001048 ] + * hindlimb bud ectoderm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hindlimb ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001048, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lower limb bud ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001034, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pelvic fin bud ectoderm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * leg ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [surrounds](../../RO/21/RO_0002221.md) some [pelvic appendage bud](../../UBERON/20/UBERON_0005420.md) and [unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005232 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003471.md b/md/UBERON/71/UBERON_0003471.md index ce37ee4256..407770dbc3 100644 --- a/md/UBERON/71/UBERON_0003471.md +++ b/md/UBERON/71/UBERON_0003471.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003471 * *Label* = artery of lower lip - * *Definition* = The Iinferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_labial_artery] + * *Definition* = The Iinferior labial artery (inferior labial branch of facial artery) arises near the angle of the mouth; it passes upward and forward beneath the Triangularis and, penetrating the Orbicularis oris, runs in a tortuous course along the edge of the lower lip between this muscle and the mucous membrane. It supplies the labial glands, the mucous membrane, and the muscles of the lower lip; and anastomoses with the artery of the opposite side, and with the mental branch of the inferior alveolar artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_labial_artery ] ## Synonyms - * arteria labialis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_labial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior labial artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49567] - * inferior labial branch of facial artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49567] - * ramus labialis inferior (arteria facialis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * ramus labialis inferior arteriae facialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_labial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria labialis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_labial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior labial artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49567 ] + * inferior labial branch of facial artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49567 ] + * ramus labialis inferior (arteria facialis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * ramus labialis inferior arteriae facialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_labial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [lower lip](../../UBERON/35/UBERON_0001835.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003571.md b/md/UBERON/71/UBERON_0003571.md index 98674dfc68..971fc3cd83 100644 --- a/md/UBERON/71/UBERON_0003571.md +++ b/md/UBERON/71/UBERON_0003571.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003571 * *Label* = trachea connective tissue - * *Definition* = A connective tissue that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A connective tissue that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003671.md b/md/UBERON/71/UBERON_0003671.md index 8e70720fce..3a2d65655b 100644 --- a/md/UBERON/71/UBERON_0003671.md +++ b/md/UBERON/71/UBERON_0003671.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003671 * *Label* = anterior cruciate ligament of knee joint - * *Definition* = A major stabilizing ligament in the knee that attaches the surfaces of the femur and tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Anterior_Cruciate_Ligament] + * *Definition* = A major stabilizing ligament in the knee that attaches the surfaces of the femur and tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Anterior_Cruciate_Ligament ] ## Synonyms - * anterior cruciate ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44614] + * anterior cruciate ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44614 ] ## Cross-references @@ -16,7 +16,7 @@ * MESH:A02.513.514.100 * OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA * SCTID:182443006 - * UMLS:C0078960 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Cruciate_Ligament] + * UMLS:C0078960 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Cruciate_Ligament ] * galen:AnteriorCruciateLigament * ncithesaurus:Anterior_Cruciate_Ligament @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0003971.md b/md/UBERON/71/UBERON_0003971.md index 7aa29ada8c..73019b4023 100644 --- a/md/UBERON/71/UBERON_0003971.md +++ b/md/UBERON/71/UBERON_0003971.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003971 * *Label* = interfrontal bone - * *Definition* = a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008818] + * *Definition* = a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008818 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004071.md b/md/UBERON/71/UBERON_0004071.md index 8ccb133028..6592565d4f 100644 --- a/md/UBERON/71/UBERON_0004071.md +++ b/md/UBERON/71/UBERON_0004071.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004071 * *Label* = cerebellum emboliform nucleus - * *Definition* = the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009981] + * *Definition* = the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009981 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004171.md b/md/UBERON/71/UBERON_0004171.md index 3121ad439f..d1f4a478e6 100644 --- a/md/UBERON/71/UBERON_0004171.md +++ b/md/UBERON/71/UBERON_0004171.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004171 * *Label* = trigeminothalamic tract - * *Definition* = the trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021974] + * *Definition* = the trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021974 ] ## Synonyms - * dorsal trigemino-thalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tth] - * tenia of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tth] - * trigeminal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4097] + * dorsal trigemino-thalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tth ] + * tenia of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tth ] + * trigeminal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4097 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004271.md b/md/UBERON/71/UBERON_0004271.md index 863dfd1833..a24ec9d372 100644 --- a/md/UBERON/71/UBERON_0004271.md +++ b/md/UBERON/71/UBERON_0004271.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004271 * *Label* = outflow tract pericardium - * *Definition* = A pericardium that is part of a outflow tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pericardium that is part of a outflow tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pericardium of outflow tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pericardium of outflow tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) and [pericardium](../../UBERON/07/UBERON_0002407.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004471.md b/md/UBERON/71/UBERON_0004471.md index 0b6e987a83..9d1387d353 100644 --- a/md/UBERON/71/UBERON_0004471.md +++ b/md/UBERON/71/UBERON_0004471.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004471 * *Label* = musculature of pectoral girdle - * *Definition* = A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * muscle group of pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33519] - * pectoral girdle muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000423] - * pectoral girdle musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33519] - * set of muscles of pectoral girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33519] + * muscle group of pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33519 ] + * pectoral girdle muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000423 ] + * pectoral girdle musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33519 ] + * set of muscles of pectoral girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33519 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004571.md b/md/UBERON/71/UBERON_0004571.md index c9c844fd82..fcb26f6763 100644 --- a/md/UBERON/71/UBERON_0004571.md +++ b/md/UBERON/71/UBERON_0004571.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004571 * *Label* = systemic arterial system - * *Definition* = the part of the cardiovascular system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Systemic_circulation#Arteries] + * *Definition* = the part of the cardiovascular system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Systemic_circulation#Arteries ] ## Synonyms - * systemic arterial circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45623] + * systemic arterial circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45623 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004671.md b/md/UBERON/71/UBERON_0004671.md index 076a258c8a..fe0f2df261 100644 --- a/md/UBERON/71/UBERON_0004671.md +++ b/md/UBERON/71/UBERON_0004671.md @@ -6,21 +6,21 @@ ## Synonyms - * gyrus rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1103] - * medial part of gyri orbitales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61893] - * rectal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61893] - * rectus gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61893] - * straight gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61893] - * ventromedial gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:94] + * gyrus rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1103 ] + * medial part of gyri orbitales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61893 ] + * rectal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61893 ] + * rectus gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61893 ] + * straight gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61893 ] + * ventromedial gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:94 ] ## Cross-references * BAMS:GRe * FMA:61893 * NIF_GrossAnatomy:birnlex_1103 - * NeuroNames:94 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1103] + * NeuroNames:94 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1103 ] * SCTID:279206004 - * UMLS:C0152300 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1103] + * UMLS:C0152300 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1103 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004771.md b/md/UBERON/71/UBERON_0004771.md index fc778b5063..6596541bc6 100644 --- a/md/UBERON/71/UBERON_0004771.md +++ b/md/UBERON/71/UBERON_0004771.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004771 * *Label* = posterior nasal aperture - * *Definition* = Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000093[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_nasal_apertures] + * *Definition* = Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000093, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_nasal_apertures ] * *Comment* = Fish don't have choanae, instead they have two pairs of external nostrils[WP] In addition to tetrapods, the lungfish has internal nostrils too. TODO: check part_of vs adjacent_to nasal cavity. In tetrapods the exhalant nostril (choana) empties into the buccal cavity. ## Synonyms - * choana [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choane[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000277] - * internal naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001323] - * choanae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000545[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * choana [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choane, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000277 ] + * internal naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001323 ] + * choanae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000545, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * nasopharyngeal naris - * posterior naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000545] + * posterior naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000545 ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) and [located_in](../../RO/25/RO_0001025.md) some [nasal cavity](../../UBERON/07/UBERON_0001707.md) and [naris](../../UBERON/03/UBERON_0000003.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Opening between the nasal cavity and the nasopharynx.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The choana, a unique 'internal nostril' opening from the nasal sac into the roof of the mouth, is a key part of the tetrapod (land vertebrate) respiratory system. It was the first component of the tetrapod body plan to evolve, well before the origin of limbs, and is therefore crucial to our understanding of the beginning of the fish-tetrapod transition. (...) Here we present new material of Kenichthys, a 395-million-year-old fossil fish from China, that provides direct evidence for the origin of the choana and establishes its homology: it is indeed a displaced posterior external nostril that, during a brief transitional stage illustrated by Kenichthys, separated the maxilla from the premaxilla.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0004871.md b/md/UBERON/71/UBERON_0004871.md index 71c0bcac2a..ba85e23060 100644 --- a/md/UBERON/71/UBERON_0004871.md +++ b/md/UBERON/71/UBERON_0004871.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004871 * *Label* = somatic layer of lateral plate mesoderm - * *Definition* = Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_plate_mesoderm#Division_into_layers] + * *Definition* = Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_plate_mesoderm#Division_into_layers ] * *Comment* = check BILA ## Synonyms * outer layer of lateral plate mesoderm - * parietal mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * somatic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000047] + * parietal mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * somatic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000047 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005071.md b/md/UBERON/71/UBERON_0005071.md index 88b786b6c4..eeef781947 100644 --- a/md/UBERON/71/UBERON_0005071.md +++ b/md/UBERON/71/UBERON_0005071.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005071 * *Label* = posterior neuropore - * *Definition* = The posterior neuropore appears before the process of neural tube closure is complete[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021507] + * *Definition* = The neuropore at the posterior (caudal) end of the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * caudal neuropore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16526] + * caudal neuropore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16526 ] ## Cross-references @@ -24,9 +24,11 @@ ## Superclasses * [neuropore](../../UBERON/77/UBERON_0005077.md) + * [in_posterior_side_of](../../BSPO/22/BSPO_0000122.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Equivalencies + * [in_posterior_side_of](../../BSPO/22/BSPO_0000122.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) and [neuropore](../../UBERON/77/UBERON_0005077.md) ## Other Logical Axioms @@ -35,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Posterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005171.md b/md/UBERON/71/UBERON_0005171.md index a9924a9483..c3c0dd662a 100644 --- a/md/UBERON/71/UBERON_0005171.md +++ b/md/UBERON/71/UBERON_0005171.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005171 * *Label* = hepatic duct - * *Definition* = The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061011] + * *Definition* = The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061011 ] * *Comment* = TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same ## Synonyms @@ -19,7 +19,7 @@ * OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA * SCTID:245399002 * TAO:0001100 - * UMLS:C0917710 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Duct] + * UMLS:C0917710 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Duct ] * VHOG:0000219 * ZFA:0001100 * galen:HepaticDuct @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A duct that carries bile from the liver to the small intestine.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The excretory duct of the liver or one of its branches in the lobes of the liver. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005271.md b/md/UBERON/71/UBERON_0005271.md index 0a7ad534e0..c75ebf3cce 100644 --- a/md/UBERON/71/UBERON_0005271.md +++ b/md/UBERON/71/UBERON_0005271.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005271 * *Label* = juxtamedullary cortex - * *Definition* = the part of the renal cortex nearest to the medulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex] + * *Definition* = the part of the renal cortex nearest to the medulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex ] ## Synonyms - * inner cortex of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74288] - * inner renal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + KUPO:0001008] - * juxtamedullary cortex of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74288] + * inner cortex of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74288 ] + * inner renal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = KUPO:0001008 ] + * juxtamedullary cortex of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74288 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005371.md b/md/UBERON/71/UBERON_0005371.md index c75411c8b7..99fc0b7414 100644 --- a/md/UBERON/71/UBERON_0005371.md +++ b/md/UBERON/71/UBERON_0005371.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005371 * *Label* = hippocampus stratum oriens - * *Definition* = The term Stratum oriens is a cytoarchitectural term denoting the layer of the hippocampus that is deep to the Stratum pyramidale hippocampi and superficial to the alveus (Stephan-75). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + nif_annot:NeuroNames_defSource] + * *Definition* = The term Stratum oriens is a cytoarchitectural term denoting the layer of the hippocampus that is deep to the Stratum pyramidale hippocampi and superficial to the alveus (Stephan-75). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = nif_annot:NeuroNames_defSource ] ## Synonyms - * oriens layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4113] - * oriens layer of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4113] - * polymorphic layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4113] - * polymorphic layer of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4113] - * stratum oriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4113] - * gyrus cuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:157[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * oriens layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4113 ] + * oriens layer of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4113 ] + * polymorphic layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4113 ] + * polymorphic layer of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4113 ] + * stratum oriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4113 ] + * gyrus cuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:157, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:83893 * MA:0000958 * NIF_GrossAnatomy:birnlex_4113 - * NeuroNames:157 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4113] + * NeuroNames:157 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4113 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005471.md b/md/UBERON/71/UBERON_0005471.md index 7eb6ecf7f0..d7eea316be 100644 --- a/md/UBERON/71/UBERON_0005471.md +++ b/md/UBERON/71/UBERON_0005471.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005471 * *Label* = right umbilical vein - * *Definition* = An umbilical vein that is in the right side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An umbilical vein that is in the right side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [umbilical vein](../../UBERON/66/UBERON_0002066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005571.md b/md/UBERON/71/UBERON_0005571.md index 1c5b23f927..43b0b26ae8 100644 --- a/md/UBERON/71/UBERON_0005571.md +++ b/md/UBERON/71/UBERON_0005571.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005571 * *Label* = rhombomere 2 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000907] + * lateral wall rhombomere 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000907 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 2](../../UBERON/69/UBERON_0005569.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005671.md b/md/UBERON/71/UBERON_0005671.md index 642a95a59b..3e027b9c84 100644 --- a/md/UBERON/71/UBERON_0005671.md +++ b/md/UBERON/71/UBERON_0005671.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005671 * *Label* = greater sac mesothelium - * *Definition* = A mesothelium that is part of a greater sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a greater sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * greater sac mehomhelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000440] + * greater sac mehomhelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000440 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [greater sac](../../UBERON/49/UBERON_0005449.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005871.md b/md/UBERON/71/UBERON_0005871.md index 6caf701d7e..15a25fb8f6 100644 --- a/md/UBERON/71/UBERON_0005871.md +++ b/md/UBERON/71/UBERON_0005871.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005871 * *Label* = palatine process of maxilla - * *Definition* = The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_process_of_maxilla] + * *Definition* = The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_process_of_maxilla ] ## Synonyms - * processus palatinus (maxilla) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52896] - * palatal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_process_of_maxilla] - * palatine process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_process_of_maxilla] - * processus palatinus maxillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_process_of_maxilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus palatinus ossis maxillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_process_of_maxilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus palatinus (maxilla) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52896 ] + * palatal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_process_of_maxilla ] + * palatine process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_process_of_maxilla ] + * processus palatinus maxillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_process_of_maxilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus palatinus ossis maxillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_process_of_maxilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0005971.md b/md/UBERON/71/UBERON_0005971.md index ab7df056a1..e99afbdfe7 100644 --- a/md/UBERON/71/UBERON_0005971.md +++ b/md/UBERON/71/UBERON_0005971.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005971 * *Label* = amniotic fold - * *Definition* = A sheet of somatopleure that grows upward over the embryo and eventually meets in the midline enclosing the embryo, eventually giving rise to the amnion and chorion[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A sheet of somatopleure that grows upward over the embryo and eventually meets in the midline enclosing the embryo, eventually giving rise to the amnion and chorion[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006071.md b/md/UBERON/71/UBERON_0006071.md index 7eb85e87c2..89b614a3c0 100644 --- a/md/UBERON/71/UBERON_0006071.md +++ b/md/UBERON/71/UBERON_0006071.md @@ -7,8 +7,8 @@ ## Synonyms - * postsacral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000082] - * tail region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000082] + * postsacral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000082 ] + * tail region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000082 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006171.md b/md/UBERON/71/UBERON_0006171.md index 5117f6331c..b7a7c9e00a 100644 --- a/md/UBERON/71/UBERON_0006171.md +++ b/md/UBERON/71/UBERON_0006171.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006271.md b/md/UBERON/71/UBERON_0006271.md index 462a594bd2..19d3e57c3a 100644 --- a/md/UBERON/71/UBERON_0006271.md +++ b/md/UBERON/71/UBERON_0006271.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006271 * *Label* = orbital fissure - * *Definition* = Either of two openings transmitting nerves and blood vessels to or from the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/orbital%20fissure] + * *Definition* = Either of two openings transmitting nerves and blood vessels to or from the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/orbital%20fissure ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006471.md b/md/UBERON/71/UBERON_0006471.md index 22c84f4350..89e40a0265 100644 --- a/md/UBERON/71/UBERON_0006471.md +++ b/md/UBERON/71/UBERON_0006471.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006471 * *Label* = Brodmann (1909) area 5 - * *Definition* = Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_5] + * *Definition* = Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_5 ] ## Synonyms - * B09-5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1736] - * BA5 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1736] - * Brodmann area 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68601] - * Brodmann area 5, preparietal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1736] - * area 5 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1736] - * area praeparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1736] - * preparietal area 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68601] - * B09-5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 5 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1015] - * brodmann's area 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1015] - * preparietal area 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_5] - * preparietal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1015] - * secondary somatosensory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_5] + * B09-5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1736 ] + * BA5 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1736 ] + * Brodmann area 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68601 ] + * Brodmann area 5, preparietal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1736 ] + * area 5 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1736 ] + * area praeparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1736 ] + * preparietal area 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68601 ] + * B09-5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 5 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1015 ] + * brodmann's area 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1015 ] + * preparietal area 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_5 ] + * preparietal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1015 ] + * secondary somatosensory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_5 ] ## Cross-references * FMA:68601 * NIF_GrossAnatomy:birnlex_1736 - * NeuroNames:1015 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1736] + * NeuroNames:1015 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1736 ] * SCTID:384764008 - * UMLS:C1272527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1736] + * UMLS:C1272527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1736 ] * Wikipedia:Brodmann_area_5 * http://upload.wikimedia.org/wikipedia/commons/5/52/Brodmann_areas_5.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006571.md b/md/UBERON/71/UBERON_0006571.md index 9a50b67ced..2f1f27a1b3 100644 --- a/md/UBERON/71/UBERON_0006571.md +++ b/md/UBERON/71/UBERON_0006571.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006571 * *Label* = trabecula carnea of left ventricle - * *Definition* = A trabecula carnea that is part of a heart left ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A trabecula carnea that is part of a heart left ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trabeculae carneae (ventriculus sinister) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7271] + * trabeculae carneae (ventriculus sinister) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7271 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) and [trabecula carnea](../../UBERON/11/UBERON_0002511.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006671.md b/md/UBERON/71/UBERON_0006671.md index 841ec4d084..2f34c4f1ae 100644 --- a/md/UBERON/71/UBERON_0006671.md +++ b/md/UBERON/71/UBERON_0006671.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006671 * *Label* = orbital fat pad - * *Definition* = A fat pad that is part of a orbital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A fat pad that is part of a orbital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * intraorbital fat pad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59005] - * orbital fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59005] - * orbital fat body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59005] - * retrobulbar fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59005] + * intraorbital fat pad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59005 ] + * orbital fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59005 ] + * orbital fat body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59005 ] + * retrobulbar fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59005 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006771.md b/md/UBERON/71/UBERON_0006771.md index 6ff1b4ab3b..9abcaf59bb 100644 --- a/md/UBERON/71/UBERON_0006771.md +++ b/md/UBERON/71/UBERON_0006771.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006771 * *Label* = long bone epiphyseal plate proliferative zone - * *Definition* = germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003662] + * *Definition* = germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003662 ] * *Comment* = In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP] ## Synonyms * epiphyseal plate proliferative zone - * zone of proliferation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002976] + * zone of proliferation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002976 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006871.md b/md/UBERON/71/UBERON_0006871.md index f43544e44b..0a6ab9b446 100644 --- a/md/UBERON/71/UBERON_0006871.md +++ b/md/UBERON/71/UBERON_0006871.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006871 * *Label* = footplate - * *Definition* = An autopod plate that has_potential_to_develop_into a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An autopod plate that has_potential_to_develop_into a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: EHDAA2 does not have a single class for footplate, but includes epithelium, mesenchyme and AER ## Synonyms @@ -16,7 +16,7 @@ * EHDAA:5143 * EHDAA:6096 * EMAPA:17249 - * UMLS:C1517291 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Plate] + * UMLS:C1517291 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Plate ] * ncithesaurus:Foot_Plate ## Subsets @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod plate](../../UBERON/30/UBERON_0010130.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004343 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0006971.md b/md/UBERON/71/UBERON_0006971.md index ad84b6f60b..48a2e088d6 100644 --- a/md/UBERON/71/UBERON_0006971.md +++ b/md/UBERON/71/UBERON_0006971.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006971 * *Label* = antler - * *Definition* = Antlers are the usually large, branching bony appendages on the heads of most deer species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antler] + * *Definition* = Antlers are the usually large, branching bony appendages on the heads of most deer species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antler ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0007171.md b/md/UBERON/71/UBERON_0007171.md index 32ac697aeb..65cdd1518f 100644 --- a/md/UBERON/71/UBERON_0007171.md +++ b/md/UBERON/71/UBERON_0007171.md @@ -6,7 +6,7 @@ ## Synonyms - * scapular border [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23797] + * scapular border [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23797 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0007271.md b/md/UBERON/71/UBERON_0007271.md index 489e6dcfe4..f9287dc22e 100644 --- a/md/UBERON/71/UBERON_0007271.md +++ b/md/UBERON/71/UBERON_0007271.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007271 * *Label* = appendage musculature - * *Definition* = Any collection of muscles that is part of an appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of an appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fin musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000207[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fin musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000207, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [appendage](../../UBERON/26/UBERON_0000026.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0007371.md b/md/UBERON/71/UBERON_0007371.md index 6a0ccb04ab..62f5346b14 100644 --- a/md/UBERON/71/UBERON_0007371.md +++ b/md/UBERON/71/UBERON_0007371.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal surface of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54646] + * dorsal surface of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54646 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0007771.md b/md/UBERON/71/UBERON_0007771.md index 55bdb372ae..470feaa968 100644 --- a/md/UBERON/71/UBERON_0007771.md +++ b/md/UBERON/71/UBERON_0007771.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007771 * *Label* = epidermis gland - * *Definition* = A gland that is part of a epidermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a epidermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * epidermal gland - * gland of epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59153] + * gland of epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59153 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epidermis](../../UBERON/03/UBERON_0001003.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0008271.md b/md/UBERON/71/UBERON_0008271.md index 95430e231b..01ba289763 100644 --- a/md/UBERON/71/UBERON_0008271.md +++ b/md/UBERON/71/UBERON_0008271.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008271 * *Label* = turtle shell - * *Definition* = a highly complicated shield for the ventral and dorsal parts of the turtle, completely enclosing all the vital organs of the turtle and in some cases even the head. It is constructed of modified bony elements such as the ribs, parts of the pelvis and other bones found in most reptiles. The bone of the shell consists of both skeletal and dermal bone, showing that the complete enclosure of the shell probably evolved by including dermal armor into the rib cage.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Turtle_shell#Shell] + * *Definition* = a highly complicated shield for the ventral and dorsal parts of the turtle, completely enclosing all the vital organs of the turtle and in some cases even the head. It is constructed of modified bony elements such as the ribs, parts of the pelvis and other bones found in most reptiles. The bone of the shell consists of both skeletal and dermal bone, showing that the complete enclosure of the shell probably evolved by including dermal armor into the rib cage.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Turtle_shell#Shell ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0008571.md b/md/UBERON/71/UBERON_0008571.md index a8cf4b6ee7..f470597b90 100644 --- a/md/UBERON/71/UBERON_0008571.md +++ b/md/UBERON/71/UBERON_0008571.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008571 * *Label* = suprahyoid muscle - * *Definition* = The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprahyoid_muscles] + * *Definition* = The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprahyoid_muscles ] ## Synonyms - * musculi suprahyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprahyoid_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * suprahyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprahyoid_muscles] - * suprahyoidala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprahyoid_muscles] + * musculi suprahyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprahyoid_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * suprahyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprahyoid_muscles ] + * suprahyoidala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprahyoid_muscles ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0008971.md b/md/UBERON/71/UBERON_0008971.md index 3325c9c410..58db5b5757 100644 --- a/md/UBERON/71/UBERON_0008971.md +++ b/md/UBERON/71/UBERON_0008971.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008971 * *Label* = left colon - * *Definition* = The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000646] + * *Definition* = The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000646 ] ## Synonyms - * distal colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000646] + * distal colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000646 ] ## Cross-references * BTO:0000646 * CALOHA:TS-0202 * SCTID:362164005 - * UMLS:C0227388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Colon] + * UMLS:C0227388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Colon ] * galen:LeftColon * ncithesaurus:Left_Colon @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009071.md b/md/UBERON/71/UBERON_0009071.md index 3aef7ecf3e..5e986cac0f 100644 --- a/md/UBERON/71/UBERON_0009071.md +++ b/md/UBERON/71/UBERON_0009071.md @@ -6,7 +6,7 @@ ## Synonyms - * mesobronchi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mesobronchi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009471.md b/md/UBERON/71/UBERON_0009471.md index 5a79a2aaca..1ac0a11af8 100644 --- a/md/UBERON/71/UBERON_0009471.md +++ b/md/UBERON/71/UBERON_0009471.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009471 * *Label* = dorsum of tongue - * *Definition* = the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/dorsum-of-tongue.html] + * *Definition* = the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/dorsum-of-tongue.html ] ## Synonyms - * dorsal tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54651] - * dorsum linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/dorsum-of-tongue.html] - * tongue dorsum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54651] + * dorsal tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54651 ] + * dorsum linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/dorsum-of-tongue.html ] + * tongue dorsum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54651 ] ## Cross-references * FMA:54651 * SCTID:66938003 - * UMLS:C0226952 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsum_of_the_Tongue] + * UMLS:C0226952 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsum_of_the_Tongue ] * ncithesaurus:Dorsum_of_the_Tongue ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009571.md b/md/UBERON/71/UBERON_0009571.md index 2d054d89a6..52502201fe 100644 --- a/md/UBERON/71/UBERON_0009571.md +++ b/md/UBERON/71/UBERON_0009571.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009571 * *Label* = ventral midline - * *Definition* = In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:bf[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:go_curators[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12075342] + * *Definition* = In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:bf, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:go_curators, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12075342 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009671.md b/md/UBERON/71/UBERON_0009671.md index 3793e16652..17fc3ed96d 100644 --- a/md/UBERON/71/UBERON_0009671.md +++ b/md/UBERON/71/UBERON_0009671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009671 * *Label* = nasal fin - * *Definition* = The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DOI:10.1002/aja.1001500308] + * *Definition* = The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DOI:10.1002/aja.1001500308 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009771.md b/md/UBERON/71/UBERON_0009771.md index ef199ec8df..d4cfd1e799 100644 --- a/md/UBERON/71/UBERON_0009771.md +++ b/md/UBERON/71/UBERON_0009771.md @@ -6,8 +6,8 @@ ## Synonyms - * left precardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70313] - * precardinal vein left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000127] + * left precardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70313 ] + * precardinal vein left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000127 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anterior cardinal vein](../../UBERON/87/UBERON_0003087.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009871.md b/md/UBERON/71/UBERON_0009871.md index 181f5b24b3..f38ce9e5e0 100644 --- a/md/UBERON/71/UBERON_0009871.md +++ b/md/UBERON/71/UBERON_0009871.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0009971.md b/md/UBERON/71/UBERON_0009971.md index 05ce35a8eb..7692c08701 100644 --- a/md/UBERON/71/UBERON_0009971.md +++ b/md/UBERON/71/UBERON_0009971.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009971 * *Label* = principal gastric gland - * *Definition* = one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003892[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/acid-gland.html] + * *Definition* = one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003892, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/acid-gland.html ] * *Comment* = AO notes: FMA has this as part of both the fundus and the body, but these are largely spatially disjoint. ## Synonyms - * acid gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/acid-gland.html] - * glandula gastrica propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14921] - * main gastric gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14921] - * oxyntic gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14921] - * principal gland of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14923] - * gastric gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003892] - * Wassman gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003892] - * gastric follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003892] + * acid gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/acid-gland.html ] + * glandula gastrica propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14921 ] + * main gastric gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14921 ] + * oxyntic gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14921 ] + * principal gland of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14923 ] + * gastric gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003892 ] + * Wassman gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003892 ] + * gastric follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003892 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0010071.md b/md/UBERON/71/UBERON_0010071.md index 33272f84c7..8011fe76fe 100644 --- a/md/UBERON/71/UBERON_0010071.md +++ b/md/UBERON/71/UBERON_0010071.md @@ -7,7 +7,7 @@ ## Synonyms - * tympanic membrane layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56732] + * tympanic membrane layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56732 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0010171.md b/md/UBERON/71/UBERON_0010171.md index 65c1ae7f0d..19efdf288a 100644 --- a/md/UBERON/71/UBERON_0010171.md +++ b/md/UBERON/71/UBERON_0010171.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010171 * *Label* = strand of hair of face - * *Definition* = A strand of hair that is part of a face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A strand of hair that is part of a face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * face hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54360] + * face hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54360 ] * face hair strand - * hair of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54360] - * facial hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54360] + * hair of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54360 ] + * facial hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54360 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) and [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0010271.md b/md/UBERON/71/UBERON_0010271.md index 936b8b203d..dd23446b75 100644 --- a/md/UBERON/71/UBERON_0010271.md +++ b/md/UBERON/71/UBERON_0010271.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010271 * *Label* = musculus retractor bulbi - * *Definition* = Cranial nerve VI innervated; ventral and posterior to the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010122] + * *Definition* = Cranial nerve VI innervated; ventral and posterior to the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010122 ] * *Comment* = Editors note: TODO - add innervation relationships // In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection[wiki/Abducens_nerve] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0010371.md b/md/UBERON/71/UBERON_0010371.md index 65ea2214e6..9ea8d82feb 100644 --- a/md/UBERON/71/UBERON_0010371.md +++ b/md/UBERON/71/UBERON_0010371.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010371 * *Label* = ecto-epithelium - * *Definition* = Epithelium that derives from the ectoderm. Examples: epithelium of acinus of lactiferous duct, subscapular lens epithelium, epithelium of posterior surface of cornea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69064] + * *Definition* = Epithelium that derives from the ectoderm. Examples: epithelium of acinus of lactiferous duct, subscapular lens epithelium, epithelium of posterior surface of cornea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69064 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0010571.md b/md/UBERON/71/UBERON_0010571.md index 8e8d255620..b371532223 100644 --- a/md/UBERON/71/UBERON_0010571.md +++ b/md/UBERON/71/UBERON_0010571.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010571 * *Label* = manual digit 2 metacarpus cartilage element - * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 2 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000520] - * fore limb digit 2 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 2 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000520 ] + * fore limb digit 2 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpus 2 cartilage element - * hand digit 2 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 2 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2 mesenchyme](../../UBERON/92/UBERON_0005692.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011171.md b/md/UBERON/71/UBERON_0011171.md index 25deb9f945..63e48eb59b 100644 --- a/md/UBERON/71/UBERON_0011171.md +++ b/md/UBERON/71/UBERON_0011171.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011171 * *Label* = jaw joint - * *Definition* = Skeletal joint that articulates bones of upper and lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://evolution.berkeley.edu/evolibrary/article/evograms_05[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Skeletal joint that articulates bones of upper and lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://evolution.berkeley.edu/evolibrary/article/evograms_05, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Some synapsids retained two pairs of jaw joints - quadrate-articular and tempero-mandibular, but this unusual paired condition did not last long[http://evolution.berkeley.edu] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [skeleton of lower jaw](../../UBERON/78/UBERON_0003278.md) and [connects](../../ts/core#connects.md) some [skeleton of upper jaw](../../UBERON/77/UBERON_0003277.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011271.md b/md/UBERON/71/UBERON_0011271.md index 2429dc90ef..ab5bc2def3 100644 --- a/md/UBERON/71/UBERON_0011271.md +++ b/md/UBERON/71/UBERON_0011271.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011271 * *Label* = caudal-sacral region of vertebral column - * *Definition* = Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] * *Comment* = Definition to be reviewed for generality across tetrapods ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the vertebral column posterior to the sacrum consisting of two to four vertebrae. The last of these vertebrae is distinguished by the possession of a well-developed haemal arch; it supports the posterior part of the cloaca and marks the posterior limit of the trunk.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011371.md b/md/UBERON/71/UBERON_0011371.md index 50a0aa3909..4a76500417 100644 --- a/md/UBERON/71/UBERON_0011371.md +++ b/md/UBERON/71/UBERON_0011371.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011371 * *Label* = sternocephalicus muscle - * *Definition* = The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1749] + * *Definition* = The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1749 ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has muscle insertion](../../RO/73/RO_0002373.md) some [mastoid process of temporal bone](../../UBERON/20/UBERON_0011220.md) and [has muscle insertion](../../RO/73/RO_0002373.md) some [occipital bone](../../UBERON/76/UBERON_0001676.md) and [has muscle origin](../../RO/72/RO_0002372.md) some [sternebra](../../UBERON/08/UBERON_0002208.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011671.md b/md/UBERON/71/UBERON_0011671.md index d5cc515723..6a9ccf905f 100644 --- a/md/UBERON/71/UBERON_0011671.md +++ b/md/UBERON/71/UBERON_0011671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011671 * *Label* = nuchal plate of carapace - * *Definition* = The anteriormost plate of the carapace. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = The anteriormost plate of the carapace. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011771.md b/md/UBERON/71/UBERON_0011771.md index 1b35d048e4..cd96cdcc03 100644 --- a/md/UBERON/71/UBERON_0011771.md +++ b/md/UBERON/71/UBERON_0011771.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011771 * *Label* = obsolete larval structure - * *Definition* = Anatomical structure that is part of the larva. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000265] + * *Definition* = Anatomical structure that is part of the larva. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000265 ] * *Comment* = Obsolete term in XAO - XAO:0003058 ## Synonyms @@ -27,9 +27,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = AAO:0000265 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011771 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/71/UBERON_0011871.md b/md/UBERON/71/UBERON_0011871.md index 4de0cbcdfe..3f0d5a8da0 100644 --- a/md/UBERON/71/UBERON_0011871.md +++ b/md/UBERON/71/UBERON_0011871.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011871 * *Label* = nasomaxillary suture - * *Definition* = A cranial suture that connects a nasal bone and connects a maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cranial suture that connects a nasal bone and connects a maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nasomaxillary suture of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52960] + * nasomaxillary suture of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52960 ] * articulation of the nasal bone with maxilla ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [maxilla](../../UBERON/97/UBERON_0002397.md) and [connects](../../ts/core#connects.md) some [nasal bone](../../UBERON/81/UBERON_0001681.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0011971.md b/md/UBERON/71/UBERON_0011971.md index e21f2056e6..d726b4b213 100644 --- a/md/UBERON/71/UBERON_0011971.md +++ b/md/UBERON/71/UBERON_0011971.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011971 * *Label* = calcaneofibular ligament - * *Definition* = A skeletal ligament that connects the fibula to the calcaneus. In humans, it is a narrow, rounded cord, running from the apex of the fibular malleolus downward and slightly backward to a tubercle on the lateral surface of the calcaneus. It is covered by the tendons of the Peroni longus and brevis.[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcaneofibular_ligament] + * *Definition* = A skeletal ligament that connects the fibula to the calcaneus. In humans, it is a narrow, rounded cord, running from the apex of the fibular malleolus downward and slightly backward to a tubercle on the lateral surface of the calcaneus. It is covered by the tendons of the Peroni longus and brevis.[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcaneofibular_ligament ] ## Synonyms - * ligamentum calcaneofibulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcaneofibular_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum calcaneofibulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcaneofibular_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [calcaneus](../../UBERON/50/UBERON_0001450.md) and [connects](../../ts/core#connects.md) some [fibula](../../UBERON/46/UBERON_0001446.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011971 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0012071.md b/md/UBERON/71/UBERON_0012071.md index ec29658ff7..58ba4c9855 100644 --- a/md/UBERON/71/UBERON_0012071.md +++ b/md/UBERON/71/UBERON_0012071.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012071 * *Label* = palate bone - * *Definition* = Any bone that is part of a palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any bone that is part of a palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note this is distinct (but not disjoint) from palatine bone ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references - * UMLS:C1518857 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palate_Bone] + * UMLS:C1518857 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palate_Bone ] * ncithesaurus:Palate_Bone ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof of mouth](../../UBERON/75/UBERON_0007375.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012071 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0012171.md b/md/UBERON/71/UBERON_0012171.md index 3d4e21d7fa..180c5ed5a4 100644 --- a/md/UBERON/71/UBERON_0012171.md +++ b/md/UBERON/71/UBERON_0012171.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012171 * *Label* = shell of nucleus accumbens - * *Definition* = Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090307] + * *Definition* = Crescent shaped outer zone of the nucleus accumbens, defined by a combination of chemoarchitecture and afferent and efferent connections. The shell is distinguished from the more centrally located core through the notable reduction in staining for the calcium-binding protein calbindin D28K, which is dense in the core and virtually absent in the shell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090307 ] ## Synonyms - * nucleus accumbens shell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090307] - * shell of nucleus accumbens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090307] - * shell region of nucleus accumbens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77387] - * accumbens nucleus shell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AcbSh] - * accumbens nucleus, shell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AcbSh] + * nucleus accumbens shell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090307 ] + * shell of nucleus accumbens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090307 ] + * shell region of nucleus accumbens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77387 ] + * accumbens nucleus shell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AcbSh ] + * accumbens nucleus, shell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AcbSh ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0012271.md b/md/UBERON/71/UBERON_0012271.md index 9659091106..b39cc506b4 100644 --- a/md/UBERON/71/UBERON_0012271.md +++ b/md/UBERON/71/UBERON_0012271.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012271 * *Label* = major duodenal papilla - * *Definition* = The common bile duct and the pancreatic duct together perforate the medial side of the second portion of the duodenum obliquely, some 7 to 10 cm below the pylorus, forming a structure called the major duodenal papilla. The accessory pancreatic duct sometimes pierces it about 2 cm above and slightly in front of these. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_duodenal_papilla] + * *Definition* = The common bile duct and the pancreatic duct together perforate the medial side of the second portion of the duodenum obliquely, some 7 to 10 cm below the pylorus, forming a structure called the major duodenal papilla. The accessory pancreatic duct sometimes pierces it about 2 cm above and slightly in front of these. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_duodenal_papilla ] ## Synonyms - * greater duodenal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15074] - * tubercle of Vater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15074] - * major papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_duodenal_papilla] - * papilla duodeni major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Major_duodenal_papilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * greater duodenal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15074 ] + * tubercle of Vater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15074 ] + * major papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_duodenal_papilla ] + * papilla duodeni major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Major_duodenal_papilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012271 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0012471.md b/md/UBERON/71/UBERON_0012471.md index 9642305d06..cb33fe2e42 100644 --- a/md/UBERON/71/UBERON_0012471.md +++ b/md/UBERON/71/UBERON_0012471.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012471 * *Label* = hepatogastric ligament - * *Definition* = Ligament extending between the liver and stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatogastric_ligament] + * *Definition* = Ligament extending between the liver and stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatogastric_ligament ] ## Synonyms * gastro-hepatic ligament - * gastrohepatic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16520] + * gastrohepatic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16520 ] * hepato-gastric ligament - * ligamentum hepatogastricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatogastric_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum hepatogastricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatogastric_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:16520 * SCTID:260825001 - * UMLS:C0230232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatogastric_Ligament] + * UMLS:C0230232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatogastric_Ligament ] * Wikipedia:Hepatogastric_ligament * ncithesaurus:Hepatogastric_Ligament @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0013171.md b/md/UBERON/71/UBERON_0013171.md index e29952edcb..e9eddbf8c6 100644 --- a/md/UBERON/71/UBERON_0013171.md +++ b/md/UBERON/71/UBERON_0013171.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013171 * *Label* = cricothyroid ligament - * *Definition* = This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:483[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_ligament] + * *Definition* = This attaches the caudal border of the thyroid cartilage to the ventral arch of the cricoid cartilage. Its sheetlike ventral portion is sometimes referred to as the cricothyroid membrane. Being elastic, it 'balances' movement at the hinge-like cricothyroid joint and determines the resting position of the larynx when the muscles are relaxed[MURDOCH]. The cricothyroid ligament is the larger part of the laryngeal membrane, continuing inferiorly as a median or anterior part and twin lateral ligaments. The median cricothyroid ligament is a flat band of white tissue joining the cricoid and thyroid cartilages, while the lateral cricothyroid ligament is also known as the cricothyroid membrane (also called conus elasticus). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:483, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_ligament ] ## Synonyms * crico-thyroid ligament - * ligamentum cricothyreoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricothyroid_ligament[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum cricothyreoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricothyroid_ligament, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:55233 * SCTID:279558006 - * UMLS:C0225542 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricothyroid_Ligament] + * UMLS:C0225542 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricothyroid_Ligament ] * Wikipedia:Cricothyroid_ligament * ncithesaurus:Cricothyroid_Ligament @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [connects](../../ts/core#connects.md) some [thyroid cartilage](../../UBERON/38/UBERON_0001738.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013171 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0013471.md b/md/UBERON/71/UBERON_0013471.md index f1a080f3bb..a34fd03086 100644 --- a/md/UBERON/71/UBERON_0013471.md +++ b/md/UBERON/71/UBERON_0013471.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013471 * *Label* = retromolar space - * *Definition* = The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromolar_space] + * *Definition* = The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromolar_space ] ## Synonyms - * retromolar gap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromolar_space] + * retromolar gap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromolar_space ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = Retromolar gap is found in some Neandertals because they had midfacial prognathism. This caused the lower toothrow to move forward, which led to the retromolar gap.. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0013671.md b/md/UBERON/71/UBERON_0013671.md index fcb29dc07d..53db778521 100644 --- a/md/UBERON/71/UBERON_0013671.md +++ b/md/UBERON/71/UBERON_0013671.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve ending](../../UBERON/53/UBERON_0012453.md) and [part_of](../../BFO/50/BFO_0000050.md) some [corpus cavernosum maxillaris](../../UBERON/58/UBERON_0013658.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0013771.md b/md/UBERON/71/UBERON_0013771.md index b36fb150ff..238809ae3f 100644 --- a/md/UBERON/71/UBERON_0013771.md +++ b/md/UBERON/71/UBERON_0013771.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013771 * *Label* = intermammary line - * *Definition* = Line connecting a pair of nipples. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Line connecting a pair of nipples. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical line](../../UBERON/00/UBERON_0006800.md) and [connects](../../ts/core#connects.md) some [left nipple](../../UBERON/72/UBERON_0013772.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013771 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0014371.md b/md/UBERON/71/UBERON_0014371.md index 0dfde4f973..a266d3d2aa 100644 --- a/md/UBERON/71/UBERON_0014371.md +++ b/md/UBERON/71/UBERON_0014371.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014371 * *Label* = future telencephalon - * *Definition* = Embryonic structure that gives rise to the telencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000571[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:curator] + * *Definition* = Embryonic structure that gives rise to the telencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000571, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:curator ] * *Comment* = paired anteriolateral division of the embryonic prosencephalon plus the lamina terminalis from which the olfactory lobes, cerebral cortex, and subcortical nuclei are derived[MP] ## Synonyms - * presumptive telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000571] + * presumptive telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000571 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014371 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0014471.md b/md/UBERON/71/UBERON_0014471.md index 104c0191eb..f5b3f65033 100644 --- a/md/UBERON/71/UBERON_0014471.md +++ b/md/UBERON/71/UBERON_0014471.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014471 * *Label* = primary fissure of cerebellum - * *Definition* = The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_fissure_of_cerebellum] + * *Definition* = The monticulus of the cerebellum is divided by the primary fissure (or preclival fissure) into an anterior, raised part, the culmen or summit, and a posterior sloped part, the clivus; the quadrangular lobule is similarly divided. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_fissure_of_cerebellum ] ## Synonyms - * fissura preclivalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * preclival fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83729] - * primary sulcus of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83729] - * primary fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081253] - * preclival fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_fissure_of_cerebellum] + * fissura preclivalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * preclival fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83729 ] + * primary sulcus of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83729 ] + * primary fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081253 ] + * preclival fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_fissure_of_cerebellum ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014471 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0014571.md b/md/UBERON/71/UBERON_0014571.md index 406dc37b39..654af5603a 100644 --- a/md/UBERON/71/UBERON_0014571.md +++ b/md/UBERON/71/UBERON_0014571.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014571 * *Label* = CA3 alveus - * *Definition* = Part of alveus lying within hippocampal sector CA3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005039] + * *Definition* = Part of alveus lying within hippocampal sector CA3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005039 ] ## Synonyms - * CA2 alveus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] - * alveus of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:alv] + * CA2 alveus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] + * alveus of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:alv ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014571 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0014671.md b/md/UBERON/71/UBERON_0014671.md index c7d4f59fa9..21e4a406bb 100644 --- a/md/UBERON/71/UBERON_0014671.md +++ b/md/UBERON/71/UBERON_0014671.md @@ -6,7 +6,7 @@ ## Synonyms - * distal interphalangeal joint of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35343] + * distal interphalangeal joint of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35343 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014671 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_0014871.md b/md/UBERON/71/UBERON_0014871.md index e46df79257..32d57637cf 100644 --- a/md/UBERON/71/UBERON_0014871.md +++ b/md/UBERON/71/UBERON_0014871.md @@ -6,11 +6,11 @@ ## Synonyms - * distal end of distal phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33036] - * distal epiphysis of distal phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33036] - * head of distal phalanx of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33036] - * head of distal phalanx of first digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33036] - * head of distal phalanx of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33036] + * distal end of distal phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33036 ] + * distal epiphysis of distal phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33036 ] + * head of distal phalanx of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33036 ] + * head of distal phalanx of first digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33036 ] + * head of distal phalanx of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33036 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pedal digit 1](../../UBERON/15/UBERON_0004315.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014871 + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2000171.md b/md/UBERON/71/UBERON_2000171.md index 71d26b847a..e91dc5660d 100644 --- a/md/UBERON/71/UBERON_2000171.md +++ b/md/UBERON/71/UBERON_2000171.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000171 * *Label* = interhyal bone - * *Definition* = Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = It articulates ventrally with the posterior end of the posterior ceratohyal. ## Synonyms - * stylohyal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000171] + * stylohyal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000171 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2000271.md b/md/UBERON/71/UBERON_2000271.md index 71363b43ea..9e4f77de4b 100644 --- a/md/UBERON/71/UBERON_2000271.md +++ b/md/UBERON/71/UBERON_2000271.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000271 * *Label* = radial bone - * *Definition* = radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. ## Synonyms - * radials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000271[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000271] + * radials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000271, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000271 ] ## Cross-references @@ -28,14 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2000371.md b/md/UBERON/71/UBERON_2000371.md index cb75a0b0f3..3b34770b68 100644 --- a/md/UBERON/71/UBERON_2000371.md +++ b/md/UBERON/71/UBERON_2000371.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2000571.md b/md/UBERON/71/UBERON_2000571.md index b4de77fc69..f542cf14b0 100644 --- a/md/UBERON/71/UBERON_2000571.md +++ b/md/UBERON/71/UBERON_2000571.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/71/UBERON_2000771.md b/md/UBERON/71/UBERON_2000771.md index 696e995242..9eefb50784 100644 --- a/md/UBERON/71/UBERON_2000771.md +++ b/md/UBERON/71/UBERON_2000771.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000771 * *Label* = hypaxial region somite 22 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2000971.md b/md/UBERON/71/UBERON_2000971.md index be74dafc7e..5ef89de8f3 100644 --- a/md/UBERON/71/UBERON_2000971.md +++ b/md/UBERON/71/UBERON_2000971.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000971[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000971, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/71/UBERON_2001171.md b/md/UBERON/71/UBERON_2001171.md index 05c592f5b6..51746c70db 100644 --- a/md/UBERON/71/UBERON_2001171.md +++ b/md/UBERON/71/UBERON_2001171.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001171 * *Label* = os suspensorium - * *Definition* = Endochondral bone and Weberian ossicle that is an element of the fourth vertebra that curves ventrally around the anterior head of the swim bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone and Weberian ossicle that is an element of the fourth vertebra that curves ventrally around the anterior head of the swim bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian ossicle 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001171] - * fifth Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001171] + * Weberian ossicle 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001171 ] + * fifth Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001171 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001371.md b/md/UBERON/71/UBERON_2001371.md index a59c72868e..b8bbf6f86e 100644 --- a/md/UBERON/71/UBERON_2001371.md +++ b/md/UBERON/71/UBERON_2001371.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001471.md b/md/UBERON/71/UBERON_2001471.md index 8ca45a585a..ee2c57c4be 100644 --- a/md/UBERON/71/UBERON_2001471.md +++ b/md/UBERON/71/UBERON_2001471.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001471 * *Label* = posterior lateral line system - * *Definition* = The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001571.md b/md/UBERON/71/UBERON_2001571.md index 3872fc38f5..901e40546d 100644 --- a/md/UBERON/71/UBERON_2001571.md +++ b/md/UBERON/71/UBERON_2001571.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001671.md b/md/UBERON/71/UBERON_2001671.md index d8a401b863..7d41ac76e3 100644 --- a/md/UBERON/71/UBERON_2001671.md +++ b/md/UBERON/71/UBERON_2001671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001671 * *Label* = anal fin radial bone - * *Definition* = anal fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin radial element](../../UBERON/71/UBERON_2101671.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001771.md b/md/UBERON/71/UBERON_2001771.md index 9219895fad..7b91bf8df6 100644 --- a/md/UBERON/71/UBERON_2001771.md +++ b/md/UBERON/71/UBERON_2001771.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001871.md b/md/UBERON/71/UBERON_2001871.md index 8af86f5c45..f75028e240 100644 --- a/md/UBERON/71/UBERON_2001871.md +++ b/md/UBERON/71/UBERON_2001871.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001871 * *Label* = Weberian ossicle set - * *Definition* = Anatomical cluster that consists of the Weberian ossicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of the Weberian ossicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2001971.md b/md/UBERON/71/UBERON_2001971.md index 7a40316588..c0c7fd25a8 100644 --- a/md/UBERON/71/UBERON_2001971.md +++ b/md/UBERON/71/UBERON_2001971.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001971 * *Label* = parapophysis 4 - * *Definition* = Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2002071.md b/md/UBERON/71/UBERON_2002071.md index 31dc1965ea..a66c666dd0 100644 --- a/md/UBERON/71/UBERON_2002071.md +++ b/md/UBERON/71/UBERON_2002071.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002071 * *Label* = distal cartilage of internal anterior process of basipterygium - * *Definition* = Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2002271.md b/md/UBERON/71/UBERON_2002271.md index 993f853276..c5361051ef 100644 --- a/md/UBERON/71/UBERON_2002271.md +++ b/md/UBERON/71/UBERON_2002271.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2005371.md b/md/UBERON/71/UBERON_2005371.md index c6d8add993..a941fa44e5 100644 --- a/md/UBERON/71/UBERON_2005371.md +++ b/md/UBERON/71/UBERON_2005371.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2100271.md b/md/UBERON/71/UBERON_2100271.md index 661ecc9074..ab02d993bd 100644 --- a/md/UBERON/71/UBERON_2100271.md +++ b/md/UBERON/71/UBERON_2100271.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2100271 * *Label* = radial element - * *Definition* = Radial elements are the internal skeletal supports of the median and paired fins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Radial elements are the internal skeletal supports of the median and paired fins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Radial elements may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. ## Synonyms - * actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000271] - * radials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000271[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000271 ] + * radials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000271, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2101671.md b/md/UBERON/71/UBERON_2101671.md index e51ee2f47a..a6a68e9b75 100644 --- a/md/UBERON/71/UBERON_2101671.md +++ b/md/UBERON/71/UBERON_2101671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101671 * *Label* = anal fin radial element - * *Definition* = Anal fin radial elements are internal skeletal supports of the anal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anal fin radial elements are internal skeletal supports of the anal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [anal fin](../../UBERON/63/UBERON_4000163.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2200271.md b/md/UBERON/71/UBERON_2200271.md index 88c93856b7..c6ec2a7226 100644 --- a/md/UBERON/71/UBERON_2200271.md +++ b/md/UBERON/71/UBERON_2200271.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2200271 * *Label* = radial cartilage - * *Definition* = radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] * *Comment* = Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. ## Synonyms - * actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000271] + * actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000271 ] ## Cross-references @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_2201671.md b/md/UBERON/71/UBERON_2201671.md index c29082c819..c7d82a6ffe 100644 --- a/md/UBERON/71/UBERON_2201671.md +++ b/md/UBERON/71/UBERON_2201671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201671 * *Label* = anal fin radial cartilage - * *Definition* = anal fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = anal fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anal fin radial element](../../UBERON/71/UBERON_2101671.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3000171.md b/md/UBERON/71/UBERON_3000171.md index 14f52ea1f7..3d10426dda 100644 --- a/md/UBERON/71/UBERON_3000171.md +++ b/md/UBERON/71/UBERON_3000171.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000171 * *Label* = fenestra prechoanalis - * *Definition* = Large opening of the nasal floor anterior to the fenestra endochoanalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Large opening of the nasal floor anterior to the fenestra endochoanalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3000571.md b/md/UBERON/71/UBERON_3000571.md index 55eb3bc406..3f39cb9524 100644 --- a/md/UBERON/71/UBERON_3000571.md +++ b/md/UBERON/71/UBERON_3000571.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3000671.md b/md/UBERON/71/UBERON_3000671.md index 8835be19bf..88db955853 100644 --- a/md/UBERON/71/UBERON_3000671.md +++ b/md/UBERON/71/UBERON_3000671.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000671 * *Label* = anterolateral process of hyoid plate - * *Definition* = Processes that flank the hyales laterally and extend anterolaterally from the anterolateral margin of the hyoid plate. They are formed as a result of new cartilaginous growth lateral to the basibranchial. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Processes that flank the hyales laterally and extend anterolaterally from the anterolateral margin of the hyoid plate. They are formed as a result of new cartilaginous growth lateral to the basibranchial. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000671] - * processus anterolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000671] - * processus lateralis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000671] + * processus alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000671 ] + * processus anterolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000671 ] + * processus lateralis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000671 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3000771.md b/md/UBERON/71/UBERON_3000771.md index aab825b767..0325862c6b 100644 --- a/md/UBERON/71/UBERON_3000771.md +++ b/md/UBERON/71/UBERON_3000771.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000771 * *Label* = acetabular depression - * *Definition* = Central, most concave portion of the acetabulum, which remains open. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Central, most concave portion of the acetabulum, which remains open. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3000871.md b/md/UBERON/71/UBERON_3000871.md index deae76156d..6bd2135176 100644 --- a/md/UBERON/71/UBERON_3000871.md +++ b/md/UBERON/71/UBERON_3000871.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000871 * *Label* = fossula tuberis superioris - * *Definition* = Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3010071.md b/md/UBERON/71/UBERON_3010071.md index b2f1ade809..b5dbb726a6 100644 --- a/md/UBERON/71/UBERON_3010071.md +++ b/md/UBERON/71/UBERON_3010071.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3010671.md b/md/UBERON/71/UBERON_3010671.md index 54b7b50d6d..059f3f6dab 100644 --- a/md/UBERON/71/UBERON_3010671.md +++ b/md/UBERON/71/UBERON_3010671.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010671 * *Label* = ramule palatonasalis - * *Definition* = Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_3010771.md b/md/UBERON/71/UBERON_3010771.md index 43a083e4dc..ee295bcf4f 100644 --- a/md/UBERON/71/UBERON_3010771.md +++ b/md/UBERON/71/UBERON_3010771.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_4000171.md b/md/UBERON/71/UBERON_4000171.md index 8fb4f22a36..ca34194ed8 100644 --- a/md/UBERON/71/UBERON_4000171.md +++ b/md/UBERON/71/UBERON_4000171.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000171 * *Label* = scapular complex - * *Definition* = Skeletal subdivision of dermal bones that may include the anterolateral plate (AL), the spinal process (Sp), and anteroventral plate (AV) and other dermal bones that are part of the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Skeletal subdivision of dermal bones that may include the anterolateral plate (AL), the spinal process (Sp), and anteroventral plate (AV) and other dermal bones that are part of the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] * *Comment* = A scapular complex is described in placoderms (Goujet and Young, 1995). ## Synonyms - * pectoral complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN 3-89937-052-X [Goujet and Young 2004]] + * pectoral complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN 3-89937-052-X [Goujet and Young 2004] ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/71/UBERON_4200171.md b/md/UBERON/71/UBERON_4200171.md index fa17da21e1..5a77ddae7d 100644 --- a/md/UBERON/71/UBERON_4200171.md +++ b/md/UBERON/71/UBERON_4200171.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0000072.md b/md/UBERON/72/UBERON_0000072.md index aa97bd2a3b..75962c248e 100644 --- a/md/UBERON/72/UBERON_0000072.md +++ b/md/UBERON/72/UBERON_0000072.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000072 * *Label* = segment of respiratory tract - * *Definition* = An organ segment that is part of a respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ segment that is part of a respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole ## Synonyms - * respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000434] + * respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000434 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ segment](../../UBERON/63/UBERON_0000063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory tract](../../UBERON/65/UBERON_0000065.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0000172.md b/md/UBERON/72/UBERON_0000172.md index 3cc2fa7032..5816927347 100644 --- a/md/UBERON/72/UBERON_0000172.md +++ b/md/UBERON/72/UBERON_0000172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000172 * *Label* = vomit - * *Definition* = Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:00000338] + * *Definition* = Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:00000338 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0000372.md b/md/UBERON/72/UBERON_0000372.md index 562570b5f8..6f755c70f8 100644 --- a/md/UBERON/72/UBERON_0000372.md +++ b/md/UBERON/72/UBERON_0000372.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000372 * *Label* = extensor digitorum brevis - * *Definition* = a muscle on the upper surface of the foot that helps extend digits 2 through 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_brevis_muscle] + * *Definition* = a muscle on the upper surface of the foot that helps extend digits 2 through 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_brevis_muscle ] ## Synonyms * extensor digitorum brevis muscle - * musculus extensor digitorum brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_brevis_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus extensor digitorum brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_brevis_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0000472.md b/md/UBERON/72/UBERON_0000472.md index 411ee2bc43..2d5a48701c 100644 --- a/md/UBERON/72/UBERON_0000472.md +++ b/md/UBERON/72/UBERON_0000472.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000472 * *Label* = simple organ - * *Definition* = Multi-tissue structure that is not part of a compound organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Multi-tissue structure that is not part of a compound organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0000972.md b/md/UBERON/72/UBERON_0000972.md index 19f57ff8e8..b90474d23a 100644 --- a/md/UBERON/72/UBERON_0000972.md +++ b/md/UBERON/72/UBERON_0000972.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000972 * *Label* = antenna - * *Definition* = The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Antenna_(biology)] + * *Definition* = The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Antenna_(biology) ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms - * feeler [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000074] + * feeler [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000074 ] ## Cross-references @@ -45,8 +45,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = antennal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = antenno - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001072.md b/md/UBERON/72/UBERON_0001072.md index 507cef8630..6988922fae 100644 --- a/md/UBERON/72/UBERON_0001072.md +++ b/md/UBERON/72/UBERON_0001072.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001072 * *Label* = inferior vena cava - * *Definition* = Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vena_cava] + * *Definition* = Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vena_cava ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * posterior vena cava - * caudal vena cava [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001194] - * vena cava inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002682] - * vena cava inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_vena_cava[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caudal vena cava [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001194 ] + * vena cava inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002682 ] + * vena cava inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_vena_cava, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0000480 * MESH:A07.231.908.949.648 * SCTID:181369003 - * UMLS:C0042458 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Vena_Cava] + * UMLS:C0042458 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Vena_Cava ] * VHOG:0001194 * Wikipedia:Inferior_vena_cava * XAO:0000388 @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001172.md b/md/UBERON/72/UBERON_0001172.md index dae4920318..3ada34381c 100644 --- a/md/UBERON/72/UBERON_0001172.md +++ b/md/UBERON/72/UBERON_0001172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001172 * *Label* = hepatic acinus - * *Definition* = The smallest functional unit of the liver, comprising all of the liver parenchyma supplied by a terminal branch of the portal vein and hepatic artery; typically involves segments of two lobules lying between two terminal hepatic venules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Liver_Acinus] + * *Definition* = The smallest functional unit of the liver, comprising all of the liver parenchyma supplied by a terminal branch of the portal vein and hepatic artery; typically involves segments of two lobules lying between two terminal hepatic venules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Liver_Acinus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:14654 * MA:0002496 * SCTID:272214009 - * UMLS:C0227519 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Liver_Acinus] + * UMLS:C0227519 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Liver_Acinus ] * ncithesaurus:Liver_Acinus ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001272.md b/md/UBERON/72/UBERON_0001272.md index 544e1db06a..76d52ddcf4 100644 --- a/md/UBERON/72/UBERON_0001272.md +++ b/md/UBERON/72/UBERON_0001272.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001272 * *Label* = innominate bone - * *Definition* = A fused bone consisting of the ilium, ischium and and pubis. Together with the sacrum and coccyx, it comprises the pelvis. [WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A fused bone consisting of the ilium, ischium and and pubis. Together with the sacrum and coccyx, it comprises the pelvis. [WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: in FMA this is a paired structure. NCITA has 'pelvic bone' but this is the *superclass* of ilium/ischium/pubis. The MA class 'pelvis bone' is actually a superclass of 'pelvic girdle bone' and caudal/sacral vertebra. Taxon notes: The hip/pelvic bone/basipterygium first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column[WP] Editor notes: currently this class is restricted to exclude the teleost bone as the definition mentions ilium, ischium and pubis. In future we may add a grouping class for girdle bones that supports the appendage ## Synonyms - * coxal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585] - * hip bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585] - * innominate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585] - * os coxa [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pelvic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585] - * bone of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16585] + * coxal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585 ] + * hip bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585 ] + * innominate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585 ] + * os coxa [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pelvic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585 ] + * bone of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16585 ] * innominate * basipterygium - * os innominatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os innominatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001372.md b/md/UBERON/72/UBERON_0001372.md index 79dd9e6088..7300359917 100644 --- a/md/UBERON/72/UBERON_0001372.md +++ b/md/UBERON/72/UBERON_0001372.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001372 * *Label* = psoas minor muscle - * *Definition* = The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Psoas_minor_muscle] + * *Definition* = The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Psoas_minor_muscle ] * *Comment* = Human variation notes: It is absent in 40% of individuals. ## Synonyms - * psoas minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002359] - * m. psoas minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Psoas_minor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * psoas minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002359 ] + * m. psoas minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Psoas_minor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:22350 * MA:0002359 * SCTID:244954007 - * UMLS:C0224420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Psoas_Minor] + * UMLS:C0224420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Psoas_Minor ] * Wikipedia:Psoas_minor_muscle * http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001472.md b/md/UBERON/72/UBERON_0001472.md index 0c9f0a143e..ca6fb4c148 100644 --- a/md/UBERON/72/UBERON_0001472.md +++ b/md/UBERON/72/UBERON_0001472.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001472 * *Label* = vaginal venous plexus - * *Definition* = The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_venous_plexus] + * *Definition* = The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_venous_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * venous vaginal plexus - * plexus venosus vaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vaginal_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus venosus vaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vaginal_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [venous plexus](../../UBERON/93/UBERON_0001593.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001572.md b/md/UBERON/72/UBERON_0001572.md index c2ac2630c5..38ed3b501e 100644 --- a/md/UBERON/72/UBERON_0001572.md +++ b/md/UBERON/72/UBERON_0001572.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001572 * *Label* = hyoglossus muscle - * *Definition* = The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoglossus_muscle] + * *Definition* = The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoglossus_muscle ] ## Synonyms - * hyoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoglossus] + * hyoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoglossus ] * m. hyoglossus ## Cross-references @@ -18,7 +18,7 @@ * FMA:46691 * MA:0002317 * SCTID:244785008 - * UMLS:C0224196 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hyoglossus_Muscle] + * UMLS:C0224196 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hyoglossus_Muscle ] * Wikipedia:Hyoglossus_muscle * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png * ncithesaurus:Hyoglossus_Muscle @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Makes up part of the tongue in frogs and salamanders.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The hyoglossus is a muscle that attaches to the hyoid and tongue and is innervated by Cranial Nerve XII.[FEED] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001672.md b/md/UBERON/72/UBERON_0001672.md index 5c2edc72cc..0a1c704f13 100644 --- a/md/UBERON/72/UBERON_0001672.md +++ b/md/UBERON/72/UBERON_0001672.md @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001772.md b/md/UBERON/72/UBERON_0001772.md index def710c87c..e86d3bbe05 100644 --- a/md/UBERON/72/UBERON_0001772.md +++ b/md/UBERON/72/UBERON_0001772.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001772 * *Label* = corneal epithelium - * *Definition* = The corneal epithelium (epithelium corne anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_epithelium] + * *Definition* = The corneal epithelium (epithelium corne anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_epithelium ] * *Comment* = Taxon notes: In zebrafish: nonpigmented, stratified squamous nonkeratinizing epithelial cells, attached to a thick basement membrane that is considered to be analogous to the Bowmans membrane in mammals ## Synonyms * anterior corneal epithelium - * cornea epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cornea epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cornea epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cornea epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * epithelium anterius (cornea) - * epithelium anterius corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58263[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epithelium anterius corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58263, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * epithelium of cornea * external epithelium of cornea - * anterior endothelium of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000287] - * e. anterius corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_epithelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * endothelium anterius corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000287] - * endothelium camerae anterioris bulbi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000287] - * endothelium corneale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000287] - * epithelium posterius corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000287] + * anterior endothelium of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000287 ] + * e. anterius corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_epithelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * endothelium anterius corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000287 ] + * endothelium camerae anterioris bulbi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000287 ] + * endothelium corneale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000287 ] + * epithelium posterius corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000287 ] ## Cross-references @@ -36,7 +36,7 @@ * MESH:A09.371.060.217.325 * SCTID:15775008 * TAO:0002187 - * UMLS:C0459875 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corneal_Epithelium] + * UMLS:C0459875 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corneal_Epithelium ] * Wikipedia:Corneal_epithelium * ZFA:0001683 * http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png @@ -59,7 +59,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cornea](../../UBERON/64/UBERON_0000964.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001872.md b/md/UBERON/72/UBERON_0001872.md index 7aa91b51ef..13a7909f42 100644 --- a/md/UBERON/72/UBERON_0001872.md +++ b/md/UBERON/72/UBERON_0001872.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001872 * *Label* = parietal lobe - * *Definition* = Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_lobe] + * *Definition* = Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_lobe ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * parietal cortex - * parietal neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + DHB:PCx] + * parietal neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = DHB:PCx ] * parietal region - * regio parietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61826[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus parietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parietal_lobe[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paralemniscal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PL] + * regio parietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61826, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus parietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parietal_lobe, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paralemniscal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PL ] ## Cross-references @@ -29,11 +29,11 @@ * MAT:0000506 * MESH:A08.186.211.730.885.213.670 * NIF_GrossAnatomy:birnlex_1148 - * NeuroNames:95 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1148] + * NeuroNames:95 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1148 ] * OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA * SCTID:180922007 - * UMLS:C0030560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1148] - * UMLS:C0030560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parietal_Lobe_of_the_Brain] + * UMLS:C0030560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1148 ] + * UMLS:C0030560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parietal_Lobe_of_the_Brain ] * Wikipedia:Parietal_lobe * http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0001972.md b/md/UBERON/72/UBERON_0001972.md index c2c8a23420..1791ddd43f 100644 --- a/md/UBERON/72/UBERON_0001972.md +++ b/md/UBERON/72/UBERON_0001972.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001972 * *Label* = submucosa of esophagus - * *Definition* = A submucosa that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * esophageal submucosa * esophagus submucosa - * gullet submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gullet submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * submucosa of esophagus - * submucosa of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tela submucosa esophagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002109[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tela submucosa oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62997[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * submucosa of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tela submucosa esophagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002109, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tela submucosa oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62997, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tela submucosa of esophagus - * submucous layer of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002109] - * tela submucosa oesophagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002109] + * submucous layer of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002109 ] + * tela submucosa oesophagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002109 ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002072.md b/md/UBERON/72/UBERON_0002072.md index 9ca3d94834..43291d5acb 100644 --- a/md/UBERON/72/UBERON_0002072.md +++ b/md/UBERON/72/UBERON_0002072.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002072 * *Label* = hypodermis - * *Definition* = Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypodermis] + * *Definition* = Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypodermis ] * *Comment* = AO Notes: BTO has 'subcutis', as part of dermis. We follow FMA in having distinct classes for hypodermis and superficial fascia, and including these as part of the non-skin intgeument. ## Synonyms * hypoderm * vertebrate hypodermis - * sub-tegumental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004525] - * subcutaneous tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypodermis] + * sub-tegumental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004525 ] + * subcutaneous tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypodermis ] * subcutis - * subtegumental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004525] - * superficial fascia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * tela subcutanea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypodermis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * subtegumental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004525 ] + * superficial fascia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * tela subcutanea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypodermis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * CALOHA:TS-2366 * FMA:70544 * TAO:0001136 - * UMLS:C0278403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subcutis] + * UMLS:C0278403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subcutis ] * Wikipedia:Hypodermis * ZFA:0001136 * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png @@ -55,8 +55,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hypodermal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = subcutaneous * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = subcutaneus - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002172.md b/md/UBERON/72/UBERON_0002172.md index 7a5d89691b..9c2d95a74f 100644 --- a/md/UBERON/72/UBERON_0002172.md +++ b/md/UBERON/72/UBERON_0002172.md @@ -6,12 +6,12 @@ ## Synonyms - * alveolus of lung atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * alveolus of lung atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * atrium alveolare * atrium of alveolus - * atrium of alveolus of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * atrium of lung alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung alveolus atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * atrium of alveolus of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * atrium of lung alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung alveolus atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002272.md b/md/UBERON/72/UBERON_0002272.md index 6f1377a639..a997017be5 100644 --- a/md/UBERON/72/UBERON_0002272.md +++ b/md/UBERON/72/UBERON_0002272.md @@ -8,10 +8,10 @@ ## Synonyms * hypothalamus medial zone - * Hypothalamic medial zone Bbehavioral control column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MEZ] - * Marginal zone of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MZ] - * medial zone of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MEZ] - * medial zone of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MZ] + * Hypothalamic medial zone Bbehavioral control column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MEZ ] + * Marginal zone of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MZ ] + * medial zone of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MEZ ] + * medial zone of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MZ ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002372.md b/md/UBERON/72/UBERON_0002372.md index bd42585db4..c2e6fc55cf 100644 --- a/md/UBERON/72/UBERON_0002372.md +++ b/md/UBERON/72/UBERON_0002372.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002372 * *Label* = tonsil - * *Definition* = Portion of lymphoid tissue on either side of the throat. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tonsil] + * *Definition* = Portion of lymphoid tissue on either side of the throat. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tonsil ] * *Comment* = Usage notes: the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region ## Synonyms - * Mandel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001387] + * Mandel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001387 ] ## Cross-references @@ -22,9 +22,9 @@ * MESH:A03.867.603.925 * NeuroNames:671 * OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA - * UMLS:C0836921 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tonsil] - * UMLS:C1519547 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tonsilar_Tissue] - * UMLS:C1519548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tonsillar_Lymphoid_Tissue] + * UMLS:C0836921 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tonsil ] + * UMLS:C1519547 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tonsilar_Tissue ] + * UMLS:C1519548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tonsillar_Lymphoid_Tissue ] * VHOG:0001139 * Wikipedia:Tonsil * ncithesaurus:Tonsil @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002472.md b/md/UBERON/72/UBERON_0002472.md index d222734c62..3d01880387 100644 --- a/md/UBERON/72/UBERON_0002472.md +++ b/md/UBERON/72/UBERON_0002472.md @@ -8,12 +8,12 @@ ## Synonyms - * propodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * proximal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83014] - * stylopodial limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * propodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * proximal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83014 ] + * stylopodial limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] * stylopodium * proximal part of limb - * proximal segment of free limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83014] + * proximal segment of free limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83014 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = stylopodial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002572.md b/md/UBERON/72/UBERON_0002572.md index a93886ea80..0f1a81c155 100644 --- a/md/UBERON/72/UBERON_0002572.md +++ b/md/UBERON/72/UBERON_0002572.md @@ -6,15 +6,15 @@ ## Synonyms - * nucleus pretectalis principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:469[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus pretectalis principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:469, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PPt * FMA:72402 * NIF_GrossAnatomy:birnlex_1048 - * NeuroNames:469 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1048] - * UMLS:C0175355 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1048] + * NeuroNames:469 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1048 ] + * UMLS:C0175355 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1048 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002672.md b/md/UBERON/72/UBERON_0002672.md index d379e5d60f..d740c25d80 100644 --- a/md/UBERON/72/UBERON_0002672.md +++ b/md/UBERON/72/UBERON_0002672.md @@ -6,15 +6,15 @@ ## Synonyms - * anterior subcentral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:73] - * sulcus subcentralis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:73[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior subcentral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:73 ] + * sulcus subcentralis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:73, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ascs * FMA:83765 * NIF_GrossAnatomy:birnlex_1332 - * NeuroNames:73 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1332] + * NeuroNames:73 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1332 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002772.md b/md/UBERON/72/UBERON_0002772.md index e2c1814b03..4da52675e0 100644 --- a/md/UBERON/72/UBERON_0002772.md +++ b/md/UBERON/72/UBERON_0002772.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002772 * *Label* = olfactory sulcus - * *Definition* = The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_sulcus] + * *Definition* = The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_sulcus ] ## Synonyms - * olfactory groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1655] - * sulcus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1655] - * olfs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1655[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus olfactorius lobi frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * olfactory groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1655 ] + * sulcus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1655 ] + * olfs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1655, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus olfactorius lobi frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,11 +18,11 @@ * BM:Tel-Cx-OFS * FMA:83769 * NIF_GrossAnatomy:birnlex_1655 - * NeuroNames:78 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1655] + * NeuroNames:78 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1655 ] * SCTID:279358007 - * UMLS:C0228205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1655] - * UMLS:C0228205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Sulcus] - * UMLS:C1281082 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1655] + * UMLS:C0228205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1655 ] + * UMLS:C0228205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Sulcus ] + * UMLS:C1281082 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1655 ] * Wikipedia:Olfactory_sulcus * http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray729_olfactory_sulcus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray729_olfactory_sulcus.png/200px-Gray729_olfactory_sulcus.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002872.md b/md/UBERON/72/UBERON_0002872.md index 16496c3c4b..59e0fb6569 100644 --- a/md/UBERON/72/UBERON_0002872.md +++ b/md/UBERON/72/UBERON_0002872.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002872 * *Label* = inferior salivatory nucleus - * *Definition* = In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_salivatory_nucleus] + * *Definition* = In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_salivatory_nucleus ] ## Synonyms - * inferior salivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021752] + * inferior salivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021752 ] * inferior salivatary nucleus - * nucleus salivarius inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:764[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:764[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_salivatory_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus salivatorius inferior nervi glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:764[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus salivarius inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:764, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:764, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_salivatory_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus salivatorius inferior nervi glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:764, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * EHDAA2:0004641 * FMA:72601 * NIF_GrossAnatomy:birnlex_2645 - * NeuroNames:764 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2645] - * UMLS:C0175534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2645] + * NeuroNames:764 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2645 ] + * UMLS:C0175534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2645 ] * Wikipedia:Inferior_salivatory_nucleus * http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray843.png/200px-Gray843.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0002972.md b/md/UBERON/72/UBERON_0002972.md index 61754e6ad2..7c3981d6e6 100644 --- a/md/UBERON/72/UBERON_0002972.md +++ b/md/UBERON/72/UBERON_0002972.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002972 * *Label* = centromedian nucleus - * *Definition* = In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Centromedian_nucleus] + * *Definition* = In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Centromedian_nucleus ] ## Synonyms - * central magnocellular nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62165] - * central nucleus-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62165] - * centre median nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62165] - * centromedian nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62165] - * centromedian thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62165] - * centrum medianum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * centrum medianum thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] + * central magnocellular nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62165 ] + * central nucleus-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62165 ] + * centre median nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62165 ] + * centromedian nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62165 ] + * centromedian thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62165 ] + * centrum medianum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * centrum medianum thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] * noyau centre median of luys - * nucleus centralis centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * nucleus centralis thalami (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * nucleus centri mediani thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * nucleus centromedianus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * nucleus centromedianus thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * nucleus centrum medianum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_805] - * CMn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_805[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * centromedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CM] - * nucleus centromedianus thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Centromedian_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus centralis centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * nucleus centralis thalami (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * nucleus centri mediani thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * nucleus centromedianus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * nucleus centromedianus thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * nucleus centrum medianum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_805 ] + * CMn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_805, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * centromedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CM ] + * nucleus centromedianus thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Centromedian_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,10 +32,10 @@ * EV:0100215 * FMA:62165 * NIF_GrossAnatomy:birnlex_805 - * NeuroNames:323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_805] + * NeuroNames:323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_805 ] * SCTID:279162007 - * UMLS:C0228351 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_805] - * UMLS:C0920328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Centromedian_Nucleus_of_the_Thalamus] + * UMLS:C0228351 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_805 ] + * UMLS:C0920328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Centromedian_Nucleus_of_the_Thalamus ] * Wikipedia:Centromedian_nucleus * ncithesaurus:Centromedian_Nucleus_of_the_Thalamus @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003072.md b/md/UBERON/72/UBERON_0003072.md index 9e2d0dcafe..fa031a9ae8 100644 --- a/md/UBERON/72/UBERON_0003072.md +++ b/md/UBERON/72/UBERON_0003072.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003072 * *Label* = optic cup - * *Definition* = Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004269[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Optic_cup_(embryology)[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001202] + * *Definition* = Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004269, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Optic_cup_(embryology), [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001202 ] ## Synonyms * eye cup - * ocular cup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000167] + * ocular cup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000167 ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:16674 * SCTID:308789007 * TAO:0001202 - * UMLS:C0231109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Cup] + * UMLS:C0231109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Cup ] * VHOG:0000167 * ZFA:0001202 * ncithesaurus:Optic_Cup @@ -44,8 +44,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003172.md b/md/UBERON/72/UBERON_0003172.md index f082623b2f..4edf348c25 100644 --- a/md/UBERON/72/UBERON_0003172.md +++ b/md/UBERON/72/UBERON_0003172.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004556 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000299 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003172 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/72/UBERON_0003372.md b/md/UBERON/72/UBERON_0003372.md index bc2b9ebbc5..882df2db70 100644 --- a/md/UBERON/72/UBERON_0003372.md +++ b/md/UBERON/72/UBERON_0003372.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003372 * *Label* = pectoral appendage bud ectoderm - * *Definition* = An unilaminar epithelium that surrounds a pectoral appendage bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An unilaminar epithelium that surrounds a pectoral appendage bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forelimb bud ectoderm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * forelimb ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001047[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * pectoral fin bud ectoderm [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * upper limb bud ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * wing ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arm ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * forelimb bud ectoderm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * forelimb ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001047, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * pectoral fin bud ectoderm [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * upper limb bud ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * wing ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arm ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [surrounds](../../RO/21/RO_0002221.md) some [pectoral appendage bud](../../UBERON/19/UBERON_0005419.md) and [unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005231 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005663 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003472.md b/md/UBERON/72/UBERON_0003472.md index 6e71f47414..ecc60ef731 100644 --- a/md/UBERON/72/UBERON_0003472.md +++ b/md/UBERON/72/UBERON_0003472.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003472 * *Label* = cerebellar artery - * *Definition* = an artery that supplies blood to the cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebellar_artery] + * *Definition* = an artery that supplies blood to the cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebellar_artery ] ## Synonyms @@ -14,7 +14,7 @@ * EHDAA:5290 * MA:0001933 * SCTID:278102002 - * UMLS:C0226246 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellar_Artery] + * UMLS:C0226246 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellar_Artery ] * Wikipedia:Cerebellar_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/250px-CerebellumArteries.jpg * ncithesaurus:Cerebellar_Artery @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003572.md b/md/UBERON/72/UBERON_0003572.md index f2df95dbc8..6985a10117 100644 --- a/md/UBERON/72/UBERON_0003572.md +++ b/md/UBERON/72/UBERON_0003572.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003572 * *Label* = chest connective tissue - * *Definition* = A portion of connective tissue that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anterior thoracic region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterior thoracic region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterior thoracic region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anterolateral part of thorax textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * front of thorax textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of anterior thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of anterolateral part of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of front of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anterior thoracic region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterior thoracic region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterior thoracic region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anterolateral part of thorax textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * front of thorax textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of anterior thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of anterolateral part of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of front of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003672.md b/md/UBERON/72/UBERON_0003672.md index bb388a4204..83540bbcb5 100644 --- a/md/UBERON/72/UBERON_0003672.md +++ b/md/UBERON/72/UBERON_0003672.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003672 * *Label* = dentition - * *Definition* = A collection of teeth arranged in some pattern in the mouth or other part of the body. The arrangement may be a simple row, a collection of rows, or a more elaborate structure, such as a toooth whorl. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A collection of teeth arranged in some pattern in the mouth or other part of the body. The arrangement may be a simple row, a collection of rows, or a more elaborate structure, such as a toooth whorl. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = In FMA this is an anatomical set ## Synonyms - * dentes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75150[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75150] - * teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75150] - * teeth set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75150] + * dentes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75150, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75150 ] + * teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75150 ] + * teeth set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75150 ] * collection of teeth * teeth @@ -23,7 +23,7 @@ * MESH:A14.254 * OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA * SCTID:245543004 - * UMLS:C0011443 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dentition] + * UMLS:C0011443 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dentition ] * ncithesaurus:Dentition ## Subsets @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The teeth collectively in the dental arch. Dentition ordinarily refers to the natural teeth in position in their alveoli. (MeSH[ncithesaurus:Dentition]) - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0003972.md b/md/UBERON/72/UBERON_0003972.md index 4a36d5321a..ef0fc96111 100644 --- a/md/UBERON/72/UBERON_0003972.md +++ b/md/UBERON/72/UBERON_0003972.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003972 * *Label* = placenta junctional zone - * *Definition* = Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008957] + * *Definition* = Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008957 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004072.md b/md/UBERON/72/UBERON_0004072.md index 90001bb381..30f0ace130 100644 --- a/md/UBERON/72/UBERON_0004072.md +++ b/md/UBERON/72/UBERON_0004072.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004072 * *Label* = cerebellum globose nucleus - * *Definition* = the two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle; it is recognized in human cerebellum but is not distinguishable in all mammalian species [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009982] + * *Definition* = the two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle; it is recognized in human cerebellum but is not distinguishable in all mammalian species [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009982 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004172.md b/md/UBERON/72/UBERON_0004172.md index cd825aaf0e..6a9a9ec668 100644 --- a/md/UBERON/72/UBERON_0004172.md +++ b/md/UBERON/72/UBERON_0004172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004172 * *Label* = pons reticulospinal tract - * *Definition* = axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021975] + * *Definition* = axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021975 ] ## Synonyms @@ -19,8 +19,8 @@ * [axon tract](../../UBERON/18/UBERON_0001018.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pons](../../UBERON/88/UBERON_0000988.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004472.md b/md/UBERON/72/UBERON_0004472.md index a9bb73b29d..d29c27a776 100644 --- a/md/UBERON/72/UBERON_0004472.md +++ b/md/UBERON/72/UBERON_0004472.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004472 * *Label* = musculature of chest - * *Definition* = Any collection of muscles that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chest musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74779] - * set of muscles of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74779] + * chest musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74779 ] + * set of muscles of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74779 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004572.md b/md/UBERON/72/UBERON_0004572.md index 1a1cf72ef0..229c606415 100644 --- a/md/UBERON/72/UBERON_0004572.md +++ b/md/UBERON/72/UBERON_0004572.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004572 * *Label* = arterial system - * *Definition* = The part of the cardiovascular system consisting of all arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The part of the cardiovascular system consisting of all arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004672.md b/md/UBERON/72/UBERON_0004672.md index 55e35a30ef..0b683af767 100644 --- a/md/UBERON/72/UBERON_0004672.md +++ b/md/UBERON/72/UBERON_0004672.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004672 * *Label* = posterior horn lateral ventricle - * *Definition* = Part of the lateral ventricle that extends posteriorly into the occipital lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1297] + * *Definition* = Part of the lateral ventricle that extends posteriorly into the occipital lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1297 ] ## Synonyms - * cornu posterius ventriculi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83700[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * occipital horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1297] - * occipital horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83700] - * posterior horn lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1297] - * posterior horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83700] - * posterior horn of the lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1297] - * olfactory ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:OLV] + * cornu posterius ventriculi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83700, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * occipital horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1297 ] + * occipital horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83700 ] + * posterior horn lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1297 ] + * posterior horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83700 ] + * posterior horn of the lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1297 ] + * olfactory ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:OLV ] ## Cross-references @@ -23,8 +23,8 @@ * NIF_GrossAnatomy:birnlex_1297 * NeuroNames:223 * SCTID:362314009 - * UMLS:C0152282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1297] - * UMLS:C0152282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle] + * UMLS:C0152282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1297 ] + * UMLS:C0152282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle ] * ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004772.md b/md/UBERON/72/UBERON_0004772.md index bdca1ecafd..63e52129aa 100644 --- a/md/UBERON/72/UBERON_0004772.md +++ b/md/UBERON/72/UBERON_0004772.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004772 * *Label* = eyelid tarsus - * *Definition* = The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsus_(eyelids)] + * *Definition* = The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsus_(eyelids) ] * *Comment* = Taxon notes: In most taxa (birds, mammals, lizards), the tarsal plate is described as a dense, fibrous connective tissue, possibly including cartilage, present within one or both of the upper and lower eyelids (Gau- thier et al., 1988; Rieppel, 2000). In humans, the tarsal plate of the upper eyelid is composed of collagens types I, III, and V, as well as glycosaminogly- cans (chondroitin sulphate 4 and 6), aggrecan, and cartilage oligomeric matrix proteins but lacks collagen type II as well as chondrocytes (Milz et al., 2005). Thus, for humans, the upper tarsal plate represents neither a truly fibrous nor a truly cartilagi- nous element but instead one that is composed of a unique transitional tissue (Milz et al., 2005). In many birds, lizards, and Sphenodon (the tuatara), the upper eyelid has lim- ited mobility and a putative tarsal plate is instead found within the lower eyelid (Underwood, 1970; Gau- thier et al., 1988). [PMID:16496288] ## Synonyms - * tarsal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59086] - * tarsal plate of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59086] - * tarsus palpebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288] - * eyelid tarsi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * tarsi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tarsal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59086 ] + * tarsal plate of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59086 ] + * tarsus palpebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288 ] + * eyelid tarsi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * tarsi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:59086 * MA:0000270 * SCTID:362529005 - * UMLS:C0459586 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tarsal_Plate] + * UMLS:C0459586 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tarsal_Plate ] * Wikipedia:Tarsus_(eyelids) * ncithesaurus:Tarsal_Plate @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0004872.md b/md/UBERON/72/UBERON_0004872.md index dce721afcb..a48dc45e51 100644 --- a/md/UBERON/72/UBERON_0004872.md +++ b/md/UBERON/72/UBERON_0004872.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004872 * *Label* = splanchnic layer of lateral plate mesoderm - * *Definition* = Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_plate_mesoderm#Division_into_layers] + * *Definition* = Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_plate_mesoderm#Division_into_layers ] * *Comment* = AO notes: We group the BILA class here. Considering adding more general class for metazoa grouping cardiogenic successors ## Synonyms * inner layer of lateral plate mesoderm - * visceral mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000044[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/visceral-mesoderm.html[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.stedmans.com/] - * splanchnic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * visceral mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000044, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/visceral-mesoderm.html, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.stedmans.com/ ] + * splanchnic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005172.md b/md/UBERON/72/UBERON_0005172.md index d4458edad3..92e986dd94 100644 --- a/md/UBERON/72/UBERON_0005172.md +++ b/md/UBERON/72/UBERON_0005172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005172 * *Label* = abdomen organ - * *Definition* = An organ that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that is in the abdomen. Examples: spleen, intestine, kidney, abdominal mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005272.md b/md/UBERON/72/UBERON_0005272.md index cd2e0ddddc..6a26c074fe 100644 --- a/md/UBERON/72/UBERON_0005272.md +++ b/md/UBERON/72/UBERON_0005272.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005272 * *Label* = peritubular capillary - * *Definition* = In the renal system, peritubular capillaries are tiny blood vessels that travel alongside nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron. Ions and minerals that need to be saved in the body are reabsorbed into the peritubular capillaries through active transport, secondary active transport, or transcytosis. The ions that need to be excreted as waste are secreted from the capillaries into the nephron to be sent towards the bladder and out of the body. The majority of exchange through the peritubular capillaries occurs because of chemical gradients, osmosis and Na+ pumps[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peritubular_capillaries] + * *Definition* = In the renal system, peritubular capillaries are tiny blood vessels that travel alongside nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron. Ions and minerals that need to be saved in the body are reabsorbed into the peritubular capillaries through active transport, secondary active transport, or transcytosis. The ions that need to be excreted as waste are secreted from the capillaries into the nephron to be sent towards the bladder and out of the body. The majority of exchange through the peritubular capillaries occurs because of chemical gradients, osmosis and Na+ pumps[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peritubular_capillaries ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005372.md b/md/UBERON/72/UBERON_0005372.md index 0c3d391258..0aa7206ceb 100644 --- a/md/UBERON/72/UBERON_0005372.md +++ b/md/UBERON/72/UBERON_0005372.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005372 * *Label* = hippocampus stratum radiatum - * *Definition* = The layer located immediately above the pyramidal cell layer in CA2 and CA1 and superficial to the stratum lucidum in CA3. Suprapyramidal region in which CA3 to CA3 associational connections and CA3 to CA1 Schaffer collateral connections are located. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1298] + * *Definition* = The layer located immediately above the pyramidal cell layer in CA2 and CA1 and superficial to the stratum lucidum in CA3. Suprapyramidal region in which CA3 to CA3 associational connections and CA3 to CA1 Schaffer collateral connections are located. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1298 ] ## Synonyms - * radiate layer of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83894] - * stratum radiatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1298] - * stratum radiatum of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Rad] + * radiate layer of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83894 ] + * stratum radiatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1298 ] + * stratum radiatum of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Rad ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:83894 * MA:0000959 * NIF_GrossAnatomy:birnlex_1298 - * NeuroNames:158 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1298] + * NeuroNames:158 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1298 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005472.md b/md/UBERON/72/UBERON_0005472.md index 2fc6e86531..d2c0efafc1 100644 --- a/md/UBERON/72/UBERON_0005472.md +++ b/md/UBERON/72/UBERON_0005472.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005472 * *Label* = right vitelline vein - * *Definition* = A vitelline vein that is in the right side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vitelline vein that is in the right side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [vitelline vein](../../UBERON/87/UBERON_0005487.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005572.md b/md/UBERON/72/UBERON_0005572.md index 3eebad4533..83d65c9dcc 100644 --- a/md/UBERON/72/UBERON_0005572.md +++ b/md/UBERON/72/UBERON_0005572.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005572 * *Label* = rhombomere 2 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000824] + * roof plate rhombomere 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000824 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 2](../../UBERON/69/UBERON_0005569.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005672.md b/md/UBERON/72/UBERON_0005672.md index 10133743cc..03610c6217 100644 --- a/md/UBERON/72/UBERON_0005672.md +++ b/md/UBERON/72/UBERON_0005672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005672 * *Label* = right lung endothelium - * *Definition* = An endothelium that is part of a right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005872.md b/md/UBERON/72/UBERON_0005872.md index c2b358f4f3..83608769d0 100644 --- a/md/UBERON/72/UBERON_0005872.md +++ b/md/UBERON/72/UBERON_0005872.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005872 * *Label* = 1st arch pharyngeal cleft - * *Definition* = A groove that is situated between the 1st and 2nd pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:OG] + * *Definition* = A groove that is situated between the 1st and 2nd pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:OG ] ## Synonyms - * 1st arch branchial groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000008] - * 1st arch groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000009] - * 1st pharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000969] - * 1st pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000554] - * branchial groove of 1st arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16119] - * 1st pharyngeal cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000969] + * 1st arch branchial groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000008 ] + * 1st arch groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000009 ] + * 1st pharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000969 ] + * 1st pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000554 ] + * branchial groove of 1st arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16119 ] + * 1st pharyngeal cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000969 ] ## Cross-references @@ -29,12 +29,12 @@ ## Superclasses * [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 1](../../UBERON/62/UBERON_0004362.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) and [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all jawed vertebrates the first arch forms the jaw, while the second arch forms the hyoid apparatus. These two arches are separated by the first pharyngeal pouch and cleft.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0005972.md b/md/UBERON/72/UBERON_0005972.md index 087ee81224..2cea5be338 100644 --- a/md/UBERON/72/UBERON_0005972.md +++ b/md/UBERON/72/UBERON_0005972.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005972 * *Label* = tunnel of Corti - * *Definition* = A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003151] + * *Definition* = A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003151 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006072.md b/md/UBERON/72/UBERON_0006072.md index e28593b460..5533f5be93 100644 --- a/md/UBERON/72/UBERON_0006072.md +++ b/md/UBERON/72/UBERON_0006072.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006072 * *Label* = cervical region of vertebral column - * *Definition* = That portion of the spine comprising the cervical vertebrae. The neck area of the spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] + * *Definition* = That portion of the spine comprising the cervical vertebrae. The neck area of the spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/ ] ## Synonyms - * cervical skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000238] - * cervical spinal column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24138] - * cervical spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24138] - * cervical vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24138] + * cervical skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000238 ] + * cervical spinal column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24138 ] + * cervical spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24138 ] + * cervical vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24138 ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:17215 * FMA:24138 * SCTID:260488005 - * UMLS:C0728985 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cervical_Spine] + * UMLS:C0728985 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cervical_Spine ] * ncithesaurus:Cervical_Spine ## Subsets @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [cervical region](../../UBERON/34/UBERON_0005434.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior region of the vertebral column consisting of one to 19 or 20 vertebrae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006172.md b/md/UBERON/72/UBERON_0006172.md index d8a24364c3..efb1561b8b 100644 --- a/md/UBERON/72/UBERON_0006172.md +++ b/md/UBERON/72/UBERON_0006172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006172 * *Label* = rectal diverticulum - * *Definition* = The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039009] + * *Definition* = The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039009 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006272.md b/md/UBERON/72/UBERON_0006272.md index 788a5627ba..6882e08100 100644 --- a/md/UBERON/72/UBERON_0006272.md +++ b/md/UBERON/72/UBERON_0006272.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006272 * *Label* = oronasal cavity - * *Definition* = In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] + * *Definition* = In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006472.md b/md/UBERON/72/UBERON_0006472.md index f6916fa5c8..319495b7e6 100644 --- a/md/UBERON/72/UBERON_0006472.md +++ b/md/UBERON/72/UBERON_0006472.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006472 * *Label* = Brodmann (1909) area 6 - * *Definition* = Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_6] + * *Definition* = Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_6 ] ## Synonyms - * B09-6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1737] - * BA6 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1737] - * Brodmann area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68602] - * Brodmann area 6, agranular frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1737] - * agranular frontal area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68602] - * area 6 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68602] - * area 6 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1737] - * area frontalis agranularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1737] - * frontal belt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68602] - * B09-6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1737[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * agranular frontal area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_6] - * agranular frontal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1020] - * area 6 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1020] - * brodmann's area 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1020] + * B09-6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1737 ] + * BA6 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1737 ] + * Brodmann area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68602 ] + * Brodmann area 6, agranular frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1737 ] + * agranular frontal area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68602 ] + * area 6 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68602 ] + * area 6 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1737 ] + * area frontalis agranularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1737 ] + * frontal belt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68602 ] + * B09-6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1737, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * agranular frontal area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_6 ] + * agranular frontal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1020 ] + * area 6 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1020 ] + * brodmann's area 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1020 ] ## Cross-references * FMA:68602 * NIF_GrossAnatomy:birnlex_1737 - * NeuroNames:1020 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1737] + * NeuroNames:1020 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1737 ] * SCTID:384765009 - * UMLS:C1272528 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1737] + * UMLS:C1272528 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1737 ] * Wikipedia:Brodmann_area_6 * http://upload.wikimedia.org/wikipedia/commons/1/11/Brodmann_areas_6.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006672.md b/md/UBERON/72/UBERON_0006672.md index 9952e59ba0..2b34d8a3ee 100644 --- a/md/UBERON/72/UBERON_0006672.md +++ b/md/UBERON/72/UBERON_0006672.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006772.md b/md/UBERON/72/UBERON_0006772.md index 385c8139d5..ae4bed206c 100644 --- a/md/UBERON/72/UBERON_0006772.md +++ b/md/UBERON/72/UBERON_0006772.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006772 * *Label* = long bone epiphyseal plate hypertrophic zone - * *Definition* = the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376] + * *Definition* = the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376 ] * *Comment* = note that there is also MA:0002849 ## Synonyms * epiphyseal plate hypertrophic zone - * hypertrophic chondrocyte zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000165] - * long bone hypertrophic chondrocyte zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000165] - * maturation zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002977] - * zone of hypertrophic chondrocytes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002977] + * hypertrophic chondrocyte zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000165 ] + * long bone hypertrophic chondrocyte zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000165 ] + * maturation zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002977 ] + * zone of hypertrophic chondrocytes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002977 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006872.md b/md/UBERON/72/UBERON_0006872.md index b9c02646ca..7d5e49d12b 100644 --- a/md/UBERON/72/UBERON_0006872.md +++ b/md/UBERON/72/UBERON_0006872.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006872 * *Label* = handplate apical ectodermal ridge - * *Definition* = An apical ectodermal ridge that is part of a handplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An apical ectodermal ridge that is part of a handplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apical ectodermal ridge](../../UBERON/56/UBERON_0004356.md) and [part_of](../../BFO/50/BFO_0000050.md) some [handplate](../../UBERON/75/UBERON_0006875.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0006972.md b/md/UBERON/72/UBERON_0006972.md index 24279a61ff..143ed79a29 100644 --- a/md/UBERON/72/UBERON_0006972.md +++ b/md/UBERON/72/UBERON_0006972.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006972 * *Label* = nephridium - * *Definition* = An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephridium] + * *Definition* = An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephridium ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0007172.md b/md/UBERON/72/UBERON_0007172.md index b4a8561fe9..84800ab8e3 100644 --- a/md/UBERON/72/UBERON_0007172.md +++ b/md/UBERON/72/UBERON_0007172.md @@ -7,7 +7,7 @@ ## Synonyms - * scapular angle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23800] + * scapular angle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23800 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0007272.md b/md/UBERON/72/UBERON_0007272.md index 9cfaeb1dc2..64b0c2a508 100644 --- a/md/UBERON/72/UBERON_0007272.md +++ b/md/UBERON/72/UBERON_0007272.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007272 * *Label* = pectoral appendage skeleton - * *Definition* = Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005000[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * *Definition* = Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005000, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Synonyms - * cheiropterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005000[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * cheiropterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005000, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0007772.md b/md/UBERON/72/UBERON_0007772.md index 282ce26e65..3707e3bbbc 100644 --- a/md/UBERON/72/UBERON_0007772.md +++ b/md/UBERON/72/UBERON_0007772.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007772 * *Label* = scrotal sweat - * *Definition* = A sweat that secreted_by a scrotal sweat gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sweat that secreted_by a scrotal sweat gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sweat of scrotum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73266] + * sweat of scrotum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73266 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [produced_by](../../RO/01/RO_0003001.md) some [scrotal sweat gland](../../UBERON/73/UBERON_0007773.md) and [sweat](../../UBERON/89/UBERON_0001089.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0008572.md b/md/UBERON/72/UBERON_0008572.md index 8a82eab07c..c1059d2120 100644 --- a/md/UBERON/72/UBERON_0008572.md +++ b/md/UBERON/72/UBERON_0008572.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008572 * *Label* = posterior crico-arytenoid - * *Definition* = The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cricoarytenoid_muscle] + * *Definition* = The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cricoarytenoid_muscle ] ## Synonyms - * posterior cricoarytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46576] - * posterior cricoarytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cricoarytenoid_muscle] - * posterior cricoarytenoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46576] - * cricoarytaenoideus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cricoarytenoid_muscle] - * cricoarytnoideus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cricoarytenoid_muscle] - * musculus cricoarytenoideus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cricoarytenoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior cricoarytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46576 ] + * posterior cricoarytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cricoarytenoid_muscle ] + * posterior cricoarytenoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46576 ] + * cricoarytaenoideus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cricoarytenoid_muscle ] + * cricoarytnoideus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cricoarytenoid_muscle ] + * musculus cricoarytenoideus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cricoarytenoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0008772.md b/md/UBERON/72/UBERON_0008772.md index c7e06c3c55..1dd0bbf36e 100644 --- a/md/UBERON/72/UBERON_0008772.md +++ b/md/UBERON/72/UBERON_0008772.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008772 * *Label* = proximal epiphysis of tibia - * *Definition* = A proximal epiphysis that is part of a tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * head of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33113] - * proximal end of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33113] + * head of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33113 ] + * proximal end of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33113 ] * proximal tibial epiphysis - * upper end of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33113] + * upper end of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33113 ] ## Cross-references * FMA:33113 * SCTID:302526005 - * UMLS:C0932431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Tibia] + * UMLS:C0932431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Tibia ] * ncithesaurus:Head_of_the_Tibia ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0008972.md b/md/UBERON/72/UBERON_0008972.md index e12f5270f4..4f48702c3b 100644 --- a/md/UBERON/72/UBERON_0008972.md +++ b/md/UBERON/72/UBERON_0008972.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008972 * *Label* = right colon - * *Definition* = The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000649] + * *Definition* = The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000649 ] ## Synonyms - * proximal colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000649] + * proximal colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000649 ] ## Cross-references * BTO:0000649 * SCTID:362161002 - * UMLS:C1305188 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Colon] + * UMLS:C1305188 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Colon ] * galen:RightColon * ncithesaurus:Right_Colon @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009072.md b/md/UBERON/72/UBERON_0009072.md index 12baf072f3..3ee9aff5b3 100644 --- a/md/UBERON/72/UBERON_0009072.md +++ b/md/UBERON/72/UBERON_0009072.md @@ -6,7 +6,7 @@ ## Synonyms - * ventrobronchi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ventrobronchi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009472.md b/md/UBERON/72/UBERON_0009472.md index 5cf4b5072a..6eb873e8ff 100644 --- a/md/UBERON/72/UBERON_0009472.md +++ b/md/UBERON/72/UBERON_0009472.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009472 * *Label* = axilla - * *Definition* = The axilla is the area on the human body directly under the joint where the arm connects to the shoulder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] + * *Definition* = The axilla is the area on the human body directly under the joint where the arm connects to the shoulder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] ## Synonyms - * arm pit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * armpit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * axillary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24864] - * regio axillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * armpits [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * axilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * axillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * axillary region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * oxter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] - * underarm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axilla] + * arm pit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * armpit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * axillary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24864 ] + * regio axillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * armpits [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * axilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * axillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * axillary region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * oxter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] + * underarm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axilla ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:24864 * MESH:A01.378.800.090 * SCTID:362732006 - * UMLS:C0004454 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axilla] + * UMLS:C0004454 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axilla ] * Wikipedia:Axilla * galen:Axilla * http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png @@ -49,8 +49,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = axillary - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009572.md b/md/UBERON/72/UBERON_0009572.md index 5962d057ff..829b2d79ac 100644 --- a/md/UBERON/72/UBERON_0009572.md +++ b/md/UBERON/72/UBERON_0009572.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009572 * *Label* = lumen of central canal of spinal cord - * *Definition* = A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_canal] + * *Definition* = A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_canal ] ## Synonyms - * cavity of central canal of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242845] - * central canal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * cavity of central canal of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242845 ] + * central canal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [central canal of spinal cord](../../UBERON/91/UBERON_0002291.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009672.md b/md/UBERON/72/UBERON_0009672.md index c48054b79b..c15a07fd91 100644 --- a/md/UBERON/72/UBERON_0009672.md +++ b/md/UBERON/72/UBERON_0009672.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009672 * *Label* = oronasal membrane - * *Definition* = The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html] + * *Definition* = The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html ] * *Comment* = split into two? ## Synonyms - * bucconasal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:7840] + * bucconasal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:7840 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009772.md b/md/UBERON/72/UBERON_0009772.md index b12468d553..bc4d17060f 100644 --- a/md/UBERON/72/UBERON_0009772.md +++ b/md/UBERON/72/UBERON_0009772.md @@ -6,8 +6,8 @@ ## Synonyms - * precardinal vein right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004537] - * right precardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70312] + * precardinal vein right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004537 ] + * right precardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70312 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anterior cardinal vein](../../UBERON/87/UBERON_0003087.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0009972.md b/md/UBERON/72/UBERON_0009972.md index 8a04911c6d..f5ed35a4bf 100644 --- a/md/UBERON/72/UBERON_0009972.md +++ b/md/UBERON/72/UBERON_0009972.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009972 * *Label* = ureteropelvic junction - * *Definition* = the junction between the ureter and the renal pelvis of the kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011487] + * *Definition* = the junction between the ureter and the renal pelvis of the kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011487 ] ## Synonyms - * pelviureteric junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15898] + * pelviureteric junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15898 ] * pelvoureteric junction ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [connects](../../ts/core#connects.md) some [renal pelvis](../../UBERON/24/UBERON_0001224.md) and [connects](../../ts/core#connects.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0010172.md b/md/UBERON/72/UBERON_0010172.md index 2db531a916..fd884fd283 100644 --- a/md/UBERON/72/UBERON_0010172.md +++ b/md/UBERON/72/UBERON_0010172.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010172 * *Label* = bulb of aorta - * *Definition* = the portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011572] + * *Definition* = the portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011572 ] ## Synonyms - * aorta bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011575] - * aortic bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3740] - * aortic root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011572] - * bulb of ascending aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3740] - * bulbus aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * root of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3740] - * supraaortic valve area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:3740] + * aorta bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011575 ] + * aortic bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3740 ] + * aortic root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011572 ] + * bulb of ascending aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3740 ] + * bulbus aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * root of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3740 ] + * supraaortic valve area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:3740 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dilated first part of the aorta containing the aortic semilunar valves and the aortic sinuses. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0010272.md b/md/UBERON/72/UBERON_0010272.md index 42769246bc..4e01673793 100644 --- a/md/UBERON/72/UBERON_0010272.md +++ b/md/UBERON/72/UBERON_0010272.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010272 * *Label* = hyoid apparatus - * *Definition* = A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Hyoid_apparatus] + * *Definition* = A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Hyoid_apparatus ] * *Comment* = Taxon notes: In most mammals, including humans, the hyoid apparatus is shaped like a horseshoe. However, in humans, some of the bones of the hyoid apparatus are fused into a single bone called os hyoideum. In other animals such as frogs, the hyoid apparatus has a hyoid body that is chiefly comprised of hyaline cartilage and two pairs of processes (i.e. alary process and the posteriolateral process). ## Synonyms - * apparatus hyobranchialis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * apparatus hyoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Hyoid_apparatus] - * hyobranchial apparatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000225] - * hyolingual system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000225] + * apparatus hyobranchialis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * apparatus hyoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Hyoid_apparatus ] + * hyobranchial apparatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000225 ] + * hyolingual system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000225 ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Apparatus located in the floor of the mouth, under the mandibular arcade. The apparatus consists of a central corpus and four pairs of processes. This apparatus serves as the site of insertion for a variety of muscles associated with movements of the tongue and as the origin of the m. hyoglossus.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of hyolaryngeal complex (AAO:0000226)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0010372.md b/md/UBERON/72/UBERON_0010372.md index 8a0700af92..0832aa15a2 100644 --- a/md/UBERON/72/UBERON_0010372.md +++ b/md/UBERON/72/UBERON_0010372.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010372 * *Label* = uncinate process of ethmoid - * *Definition* = In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_ethmoid_bone] + * *Definition* = In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_ethmoid_bone ] ## Synonyms - * uncinate process of the ethmoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_ethmoid_bone] - * uncinate process of the ethmoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_ethmoid_bone] - * uncinate process [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * processus uncinatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_ethmoid_bone] - * processus uncinatus ossis ethmoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_ethmoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * uncinate process of the ethmoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_ethmoid_bone ] + * uncinate process of the ethmoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_ethmoid_bone ] + * uncinate process [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * processus uncinatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_ethmoid_bone ] + * processus uncinatus ossis ethmoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_ethmoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0010572.md b/md/UBERON/72/UBERON_0010572.md index bd1f0d680b..4858f6392a 100644 --- a/md/UBERON/72/UBERON_0010572.md +++ b/md/UBERON/72/UBERON_0010572.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010572 * *Label* = manual digit 3 metacarpus cartilage element - * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 3 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000526] - * fore limb digit 3 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 3 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000526 ] + * fore limb digit 3 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpus 3 cartilage element - * hand digit 3 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 3 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3 mesenchyme](../../UBERON/93/UBERON_0005693.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010572 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011172.md b/md/UBERON/72/UBERON_0011172.md index af86f4985c..d662136abe 100644 --- a/md/UBERON/72/UBERON_0011172.md +++ b/md/UBERON/72/UBERON_0011172.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011172 * *Label* = retrorubral area - * *Definition* = The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090301] + * *Definition* = The term retrorubral area of the midbrain reticular nucleus refers to a region of the rat brain caudal and dorsal to the ventral tegmental area. It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus (Swanson-2004). BrainInfo distinguishes between the Retrorubral area of the midbrain reticular formation and the retrorubral nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090301 ] ## Synonyms - * midbrain reticular nucleus, retrorubral area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:RR] - * A8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090301] - * retrorubal field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/] - * area 11 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036] - * area orbitalis interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brodmann's area 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1036] - * midbraiin reticular nucleus, retrorubral area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RR] - * retrorubral field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RR] - * retrorubral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RR] + * midbrain reticular nucleus, retrorubral area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:RR ] + * A8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090301 ] + * retrorubal field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/ ] + * area 11 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036 ] + * area orbitalis interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brodmann's area 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1036 ] + * midbraiin reticular nucleus, retrorubral area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RR ] + * retrorubral field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RR ] + * retrorubral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RR ] ## Cross-references * ABA:RR * BAMS:RR * NIF_GrossAnatomy:nlx_anat_20090301 - * NeuroNames:1036 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:nlx_anat_20090301] + * NeuroNames:1036 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:nlx_anat_20090301 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011272.md b/md/UBERON/72/UBERON_0011272.md index bb6f3f06de..e16b8be05d 100644 --- a/md/UBERON/72/UBERON_0011272.md +++ b/md/UBERON/72/UBERON_0011272.md @@ -8,7 +8,7 @@ ## Synonyms * basal cell layer of skin - * outer epithelium of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipathways:WP2062] + * outer epithelium of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipathways:WP2062 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011472.md b/md/UBERON/72/UBERON_0011472.md index 52296eb0ec..08bef261f5 100644 --- a/md/UBERON/72/UBERON_0011472.md +++ b/md/UBERON/72/UBERON_0011472.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011472 * *Label* = ventral lateral sacrocaudal muscle - * *Definition* = The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2183] + * *Definition* = The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2183 ] ## Synonyms - * lumbosacrocaudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002342] - * lumbosacrocaudalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002342] - * ventral lateral sacrocaudal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2183] + * lumbosacrocaudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002342 ] + * lumbosacrocaudalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002342 ] + * ventral lateral sacrocaudal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2183 ] ## Cross-references @@ -22,7 +22,7 @@ ## Superclasses * [tail muscle](../../UBERON/65/UBERON_0003665.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [tail](../../UBERON/15/UBERON_0002415.md) * [capable of part of](../../RO/16/RO_0002216.md) some [tail movement](../../NBO/45/NBO_0000445.md) * [attaches_to](../../RO/71/RO_0002371.md) some [caudal vertebra](../../UBERON/95/UBERON_0001095.md) * [attaches_to](../../RO/71/RO_0002371.md) some [lumbar vertebra](../../UBERON/14/UBERON_0002414.md) @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011672.md b/md/UBERON/72/UBERON_0011672.md index e78d554ff0..8f2b4474a7 100644 --- a/md/UBERON/72/UBERON_0011672.md +++ b/md/UBERON/72/UBERON_0011672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011672 * *Label* = suprapygal plate of carapace - * *Definition* = A plate that lies between the posteriormost neural plate and the pygal plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A plate that lies between the posteriormost neural plate and the pygal plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011772.md b/md/UBERON/72/UBERON_0011772.md index 90638e4ee6..0c18416647 100644 --- a/md/UBERON/72/UBERON_0011772.md +++ b/md/UBERON/72/UBERON_0011772.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011772 * *Label* = lower jaw opening - * *Definition* = An anatomical space that is part of a bone of lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that is part of a bone of lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [bone of lower jaw](../../UBERON/68/UBERON_0004768.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0011972.md b/md/UBERON/72/UBERON_0011972.md index 85ae39547e..ce0a4220b5 100644 --- a/md/UBERON/72/UBERON_0011972.md +++ b/md/UBERON/72/UBERON_0011972.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011972 * *Label* = medial ligament of ankle joint - * *Definition* = A skeletal ligament that connects a tibia and connects a tarsal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal ligament that connects a tibia and connects a tarsal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * deltoid collateral ligament of ankle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44055] - * deltoid ligament of ankle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44055] - * ligamentum collaterale mediale (articulatio talocruralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44055] - * ligamentum deltoideum (articulatio talocruralis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44055] - * ligamentum deltoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * medial collateral ligament of ankle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44055] + * deltoid collateral ligament of ankle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44055 ] + * deltoid ligament of ankle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44055 ] + * ligamentum collaterale mediale (articulatio talocruralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44055 ] + * ligamentum deltoideum (articulatio talocruralis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44055 ] + * ligamentum deltoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * medial collateral ligament of ankle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44055 ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [tarsal skeleton](../../UBERON/79/UBERON_0009879.md) and [connects](../../ts/core#connects.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011972 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0012072.md b/md/UBERON/72/UBERON_0012072.md index f101121d5c..716954668f 100644 --- a/md/UBERON/72/UBERON_0012072.md +++ b/md/UBERON/72/UBERON_0012072.md @@ -6,8 +6,8 @@ ## Synonyms - * dermatocranium, palatal series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * palatal series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * dermatocranium, palatal series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * palatal series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012072 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0012172.md b/md/UBERON/72/UBERON_0012172.md index 93888df156..093fdf48ba 100644 --- a/md/UBERON/72/UBERON_0012172.md +++ b/md/UBERON/72/UBERON_0012172.md @@ -6,12 +6,12 @@ ## Synonyms - * stomach endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0002580] + * stomach endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0002580 ] ## Cross-references * EFO:0002580 - * UMLS:C1514976 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stomach_Primordium] + * UMLS:C1514976 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stomach_Primordium ] * ncithesaurus:Stomach_Primordium ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0012272.md b/md/UBERON/72/UBERON_0012272.md index ca741e80df..fc4773c0c1 100644 --- a/md/UBERON/72/UBERON_0012272.md +++ b/md/UBERON/72/UBERON_0012272.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012272 * *Label* = minor duodenal papilla - * *Definition* = The minor duodenal papilla is the opening of the accessory pancreatic duct into the duodenum. It is sometimes absent, and often nonfunctional. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Minor_duodenal_papilla] + * *Definition* = The minor duodenal papilla is the opening of the accessory pancreatic duct into the duodenum. It is sometimes absent, and often nonfunctional. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Minor_duodenal_papilla ] ## Synonyms - * Santorini's caruncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15075] - * Santorini's minor caruncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Minor_duodenal_papilla] - * lesser duodenal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15075] - * minor papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Minor_duodenal_papilla] + * Santorini's caruncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15075 ] + * Santorini's minor caruncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Minor_duodenal_papilla ] + * lesser duodenal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15075 ] + * minor papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Minor_duodenal_papilla ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012272 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0012472.md b/md/UBERON/72/UBERON_0012472.md index bfce585659..2ecf95b2b3 100644 --- a/md/UBERON/72/UBERON_0012472.md +++ b/md/UBERON/72/UBERON_0012472.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012472 * *Label* = hepatoduodenal ligament - * *Definition* = The hepatoduodenal ligament is the portion of the lesser omentum extending between the porta hepatis of the liver and the superior part of the duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatoduodenal_ligament] + * *Definition* = The hepatoduodenal ligament is the portion of the lesser omentum extending between the porta hepatis of the liver and the superior part of the duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatoduodenal_ligament ] ## Synonyms - * ligamentum hepatoduodenale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatoduodenal_ligament] + * ligamentum hepatoduodenale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatoduodenal_ligament ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0013172.md b/md/UBERON/72/UBERON_0013172.md index 689099ca63..8036c87536 100644 --- a/md/UBERON/72/UBERON_0013172.md +++ b/md/UBERON/72/UBERON_0013172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013172 * *Label* = cricotracheal ligament - * *Definition* = The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:486[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricotracheal_ligament] + * *Definition* = The cricotracheal ligament connects the cricoid cartilage with the first ring of the trachea[WP]. The caudal border of the cricoid cartilage is joined to the first ring of the trachea by this ligament. It is an extrinsic laryngeal ligament. It resembles the fibrous membrane which connects the cartilaginous rings of the trachea to each other. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:486, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricotracheal_ligament ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:55259 * SCTID:279553002 - * UMLS:C0225543 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricotracheal_Ligament] + * UMLS:C0225543 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricotracheal_Ligament ] * Wikipedia:Cricotracheal_ligament * ncithesaurus:Cricotracheal_Ligament @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [cricoid cartilage](../../UBERON/75/UBERON_0002375.md) and [connects](../../ts/core#connects.md) some [trachea cartilage](../../UBERON/04/UBERON_0003604.md) and [ligament of larynx](../../UBERON/43/UBERON_0001743.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013172 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0013472.md b/md/UBERON/72/UBERON_0013472.md index 64704e8586..08fded9b11 100644 --- a/md/UBERON/72/UBERON_0013472.md +++ b/md/UBERON/72/UBERON_0013472.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013472 * *Label* = upper esophagus - * *Definition* = The upper one third of esophagus in which the muscle layer is composed of muscle cells of the striated type. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Upper_Third_of_the_Esophagus] + * *Definition* = The upper one third of esophagus in which the muscle layer is composed of muscle cells of the striated type. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Upper_Third_of_the_Esophagus ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * SCTID:276801001 - * UMLS:C0227187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Upper_Third_of_the_Esophagus] + * UMLS:C0227187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Upper_Third_of_the_Esophagus ] * ncithesaurus:Upper_Third_of_the_Esophagus ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013472 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0013672.md b/md/UBERON/72/UBERON_0013672.md index 95a71977a9..a6f837a9c2 100644 --- a/md/UBERON/72/UBERON_0013672.md +++ b/md/UBERON/72/UBERON_0013672.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013672 * *Label* = priapium - * *Definition* = A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:047175644X[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://species.wikimedia.org/wiki/Template:Zt3363.45] + * *Definition* = A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:047175644X, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://species.wikimedia.org/wiki/Template:Zt3363.45 ] * *Comment* = Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:047175644X] ## Synonyms - * priapia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * priapia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_270656 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0013772.md b/md/UBERON/72/UBERON_0013772.md index e031df19fd..639cf5212a 100644 --- a/md/UBERON/72/UBERON_0013772.md +++ b/md/UBERON/72/UBERON_0013772.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [body proper](../../UBERON/02/UBERON_0013702.md) and [nipple](../../UBERON/30/UBERON_0002030.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0014372.md b/md/UBERON/72/UBERON_0014372.md index 35f9829a61..8b89421c39 100644 --- a/md/UBERON/72/UBERON_0014372.md +++ b/md/UBERON/72/UBERON_0014372.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014372 * *Label* = fibroelastic membrane of larynx - * *Definition* = A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=53910] + * *Definition* = A layer of fibrous and elastic fibers, taking the place of the submucosa in the larynx. It is divided by the laryngeal ventricle into two parts: the quadrangular membrane superiorly and the conus elasticus inferiorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=53910 ] ## Synonyms - * fibro-elastic membrane of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55239] - * membrana fibroelastica laryngis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=53910[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fibro-elastic membrane of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55239 ] + * membrana fibroelastica laryngis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=53910, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014372 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0014672.md b/md/UBERON/72/UBERON_0014672.md index 2f7a9432b1..71c81afcde 100644 --- a/md/UBERON/72/UBERON_0014672.md +++ b/md/UBERON/72/UBERON_0014672.md @@ -6,8 +6,8 @@ ## Synonyms - * distal interphalangeal joint of second digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35369] - * distal interphalangeal joint of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35369] + * distal interphalangeal joint of second digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35369 ] + * distal interphalangeal joint of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35369 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014672 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0014772.md b/md/UBERON/72/UBERON_0014772.md index 2c2ebbd0f9..381f1ee6d4 100644 --- a/md/UBERON/72/UBERON_0014772.md +++ b/md/UBERON/72/UBERON_0014772.md @@ -6,8 +6,8 @@ ## Synonyms - * lateral palpebral branch of ophthalmic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49940] - * lateral palpebral branches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_palpebral_arteries] + * lateral palpebral branch of ophthalmic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49940 ] + * lateral palpebral branches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_palpebral_arteries ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014772 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_0014872.md b/md/UBERON/72/UBERON_0014872.md index 266cf4e6f7..668431bfc5 100644 --- a/md/UBERON/72/UBERON_0014872.md +++ b/md/UBERON/72/UBERON_0014872.md @@ -6,9 +6,9 @@ ## Synonyms - * distal end of distal phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33045] - * distal epiphysis of distal phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33045] - * head of distal phalanx of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33045] + * distal end of distal phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33045 ] + * distal epiphysis of distal phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33045 ] + * head of distal phalanx of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33045 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pedal digit 2](../../UBERON/16/UBERON_0004316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014872 + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2000072.md b/md/UBERON/72/UBERON_2000072.md index b2bc8a7541..3e14497cd0 100644 --- a/md/UBERON/72/UBERON_2000072.md +++ b/md/UBERON/72/UBERON_2000072.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000072 * *Label* = somite 1 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 1 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2000372.md b/md/UBERON/72/UBERON_2000372.md index cb067ee1b5..85d764dc1a 100644 --- a/md/UBERON/72/UBERON_2000372.md +++ b/md/UBERON/72/UBERON_2000372.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2000772.md b/md/UBERON/72/UBERON_2000772.md index 0518aa7347..d2d05037ee 100644 --- a/md/UBERON/72/UBERON_2000772.md +++ b/md/UBERON/72/UBERON_2000772.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000772 * *Label* = hypaxial region somite 25 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2000872.md b/md/UBERON/72/UBERON_2000872.md index 7eef38fa54..a1e6c92a07 100644 --- a/md/UBERON/72/UBERON_2000872.md +++ b/md/UBERON/72/UBERON_2000872.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000872 * *Label* = epaxial region somite 29 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2000972.md b/md/UBERON/72/UBERON_2000972.md index 1c4f981111..c913603948 100644 --- a/md/UBERON/72/UBERON_2000972.md +++ b/md/UBERON/72/UBERON_2000972.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000972[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000972, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/72/UBERON_2001172.md b/md/UBERON/72/UBERON_2001172.md index fa4b0bff3f..b3d47b6caf 100644 --- a/md/UBERON/72/UBERON_2001172.md +++ b/md/UBERON/72/UBERON_2001172.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001172 * *Label* = roofing cartilage - * *Definition* = Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2001472.md b/md/UBERON/72/UBERON_2001472.md index 3f8a2562e8..c502a16411 100644 --- a/md/UBERON/72/UBERON_2001472.md +++ b/md/UBERON/72/UBERON_2001472.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001472 * *Label* = anterior lateral line neuromast - * *Definition* = Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * neuromast anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001472] + * neuromast anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001472 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2001672.md b/md/UBERON/72/UBERON_2001672.md index a656d609c2..f2ec576596 100644 --- a/md/UBERON/72/UBERON_2001672.md +++ b/md/UBERON/72/UBERON_2001672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001672 * *Label* = dorsal fin radial bone - * *Definition* = dorsal fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -26,14 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin radial element](../../UBERON/72/UBERON_2101672.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2001772.md b/md/UBERON/72/UBERON_2001772.md index a5849ed2af..85860feb53 100644 --- a/md/UBERON/72/UBERON_2001772.md +++ b/md/UBERON/72/UBERON_2001772.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2001872.md b/md/UBERON/72/UBERON_2001872.md index 4271d201c6..e1082685c5 100644 --- a/md/UBERON/72/UBERON_2001872.md +++ b/md/UBERON/72/UBERON_2001872.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001872 * *Label* = trunk sensory canal system - * *Definition* = Lateral line system on trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lateral line system on trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2001972.md b/md/UBERON/72/UBERON_2001972.md index d243864ea6..518b9d4e0c 100644 --- a/md/UBERON/72/UBERON_2001972.md +++ b/md/UBERON/72/UBERON_2001972.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001972 * *Label* = intercostal ligament - * *Definition* = Ligament that connects one rib to another. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that connects one rib to another. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2002072.md b/md/UBERON/72/UBERON_2002072.md index f87da83f63..c3e2df8957 100644 --- a/md/UBERON/72/UBERON_2002072.md +++ b/md/UBERON/72/UBERON_2002072.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002072 * *Label* = middle anterior process of basipterygium - * *Definition* = Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * middle anterior arm of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002072] + * middle anterior arm of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002072 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2002172.md b/md/UBERON/72/UBERON_2002172.md index a73ddd4406..26cf6ca34e 100644 --- a/md/UBERON/72/UBERON_2002172.md +++ b/md/UBERON/72/UBERON_2002172.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2002272.md b/md/UBERON/72/UBERON_2002272.md index ea93b50685..228315c84d 100644 --- a/md/UBERON/72/UBERON_2002272.md +++ b/md/UBERON/72/UBERON_2002272.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2005072.md b/md/UBERON/72/UBERON_2005072.md index 2366325421..9e3a995120 100644 --- a/md/UBERON/72/UBERON_2005072.md +++ b/md/UBERON/72/UBERON_2005072.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2005272.md b/md/UBERON/72/UBERON_2005272.md index 1eb614d3b6..6453b3fdb2 100644 --- a/md/UBERON/72/UBERON_2005272.md +++ b/md/UBERON/72/UBERON_2005272.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005272 * *Label* = immature gonad - * *Definition* = Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-070305-2] + * *Definition* = Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-070305-2 ] ## Synonyms - * juvenile gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005272] + * juvenile gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005272 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2005372.md b/md/UBERON/72/UBERON_2005372.md index 472e585edd..584714cd5b 100644 --- a/md/UBERON/72/UBERON_2005372.md +++ b/md/UBERON/72/UBERON_2005372.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005372 * *Label* = dorsal fin distal radial bone 1 - * *Definition* = dorsal fin distal radial 1 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 1 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 1](../../UBERON/72/UBERON_2105372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2101672.md b/md/UBERON/72/UBERON_2101672.md index b91aef7110..714fcdc1b4 100644 --- a/md/UBERON/72/UBERON_2101672.md +++ b/md/UBERON/72/UBERON_2101672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101672 * *Label* = dorsal fin radial element - * *Definition* = Dorsal fin radial elements are internal skeletal supports of the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dorsal fin radial elements are internal skeletal supports of the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin skeleton](../../UBERON/68/UBERON_4000168.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2105372.md b/md/UBERON/72/UBERON_2105372.md index 9d06d31c85..8bfc18bfd4 100644 --- a/md/UBERON/72/UBERON_2105372.md +++ b/md/UBERON/72/UBERON_2105372.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 1](../../UBERON/94/UBERON_2002094.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2201672.md b/md/UBERON/72/UBERON_2201672.md index 80d42466a3..3c61fe20be 100644 --- a/md/UBERON/72/UBERON_2201672.md +++ b/md/UBERON/72/UBERON_2201672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201672 * *Label* = dorsal fin radial cartilage - * *Definition* = dorsal fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin radial element](../../UBERON/72/UBERON_2101672.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_2205372.md b/md/UBERON/72/UBERON_2205372.md index 2583000582..b388f51023 100644 --- a/md/UBERON/72/UBERON_2205372.md +++ b/md/UBERON/72/UBERON_2205372.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205372 * *Label* = dorsal fin distal radial cartilage 1 - * *Definition* = dorsal fin distal radial 1 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 1 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 1](../../UBERON/72/UBERON_2105372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3000372.md b/md/UBERON/72/UBERON_3000372.md index c66db627b3..59269b50dc 100644 --- a/md/UBERON/72/UBERON_3000372.md +++ b/md/UBERON/72/UBERON_3000372.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000372 * *Label* = obsolete palatine - * *Definition* = Sliver of bone that invest part of or all the posterior aspect of each antorbital plane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Sliver of bone that invest part of or all the posterior aspect of each antorbital plane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * neopalatine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000372] + * neopalatine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000372 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001682 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/72/UBERON_3000572.md b/md/UBERON/72/UBERON_3000572.md index 5fd514bad4..e6426bae5a 100644 --- a/md/UBERON/72/UBERON_3000572.md +++ b/md/UBERON/72/UBERON_3000572.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000572 * *Label* = sphenethmoid - * *Definition* = Endochondral bone that forms the anterior portion of the braincase and forms from one ossification center on each side of the orbital cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Endochondral bone that forms the anterior portion of the braincase and forms from one ossification center on each side of the orbital cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * Os sphenethmoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000572] - * orbitosphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000572] - * orbitotemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000572] + * Os sphenethmoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000572 ] + * orbitosphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000572 ] + * orbitotemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000572 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3000672.md b/md/UBERON/72/UBERON_3000672.md index afe37627b3..ff8f584041 100644 --- a/md/UBERON/72/UBERON_3000672.md +++ b/md/UBERON/72/UBERON_3000672.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000672 * *Label* = posterolateral process - * *Definition* = Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3000872.md b/md/UBERON/72/UBERON_3000872.md index ed99ad3fb3..a9d36f5b46 100644 --- a/md/UBERON/72/UBERON_3000872.md +++ b/md/UBERON/72/UBERON_3000872.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000872 * *Label* = collum ilei - * *Definition* = Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3000972.md b/md/UBERON/72/UBERON_3000972.md index fae73e6e09..d37964a729 100644 --- a/md/UBERON/72/UBERON_3000972.md +++ b/md/UBERON/72/UBERON_3000972.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000972 * *Label* = head external integument structure - * *Definition* = Dermal, epidermal, glandular and pigment structures of the external head integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dermal, epidermal, glandular and pigment structures of the external head integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3010072.md b/md/UBERON/72/UBERON_3010072.md index 72aabaf8a6..9c34f813b0 100644 --- a/md/UBERON/72/UBERON_3010072.md +++ b/md/UBERON/72/UBERON_3010072.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010072 * *Label* = M. pyriformis - * *Definition* = Originates on the dorso-lateral border of the distal urostyle and inserts on the dorsal surface of the crista femoris. This muscle inserts between the M. ilio-fibularis/M. glutaeus magnus and M. semimembranosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the dorso-lateral border of the distal urostyle and inserts on the dorsal surface of the crista femoris. This muscle inserts between the M. ilio-fibularis/M. glutaeus magnus and M. semimembranosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3010172.md b/md/UBERON/72/UBERON_3010172.md index b1e7187a97..44403b824d 100644 --- a/md/UBERON/72/UBERON_3010172.md +++ b/md/UBERON/72/UBERON_3010172.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_3010272.md b/md/UBERON/72/UBERON_3010272.md index b6b9d544c5..4a317b3bdd 100644 --- a/md/UBERON/72/UBERON_3010272.md +++ b/md/UBERON/72/UBERON_3010272.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010272 * *Label* = obsolete asexual organism - * *Definition* = Multi-cellular organism that does not produce gametes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Multi-cellular organism that does not produce gametes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms ## Cross-references - * CARO:0000030 [[rdf-schema#label](../../el/rdf-schema#label.md) = + asexual organism] + * CARO:0000030 [ [rdf-schema#label](../../el/rdf-schema#label.md) = asexual organism ] ## Subsets @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/72/UBERON_3010772.md b/md/UBERON/72/UBERON_3010772.md index c71412696d..bf0fee401c 100644 --- a/md/UBERON/72/UBERON_3010772.md +++ b/md/UBERON/72/UBERON_3010772.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010772 * *Label* = M. dorsalis trunci - * *Definition* = Originates on the postero-dorsal edge of the postzygopophyses and insert on the dorsal surface of the neural arch of the posterior, adjacent vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the postero-dorsal edge of the postzygopophyses and insert on the dorsal surface of the neural arch of the posterior, adjacent vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_4000172.md b/md/UBERON/72/UBERON_4000172.md index 94c556849e..40c4aa5107 100644 --- a/md/UBERON/72/UBERON_4000172.md +++ b/md/UBERON/72/UBERON_4000172.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000172 * *Label* = lepidotrichium - * *Definition* = Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Need to review develops_from relationship to actinotrichia. Lepidotrichia require actinotrichia for development, but develops_from may not be appropriate relationship. See Zhang et al 2010 for details. doi:10.1038/nature09137 ## Synonyms - * fin ray [[see also](../../so/rdf-schema#seeAlso.md) = + VSAO:0000172] + * fin ray [ [see also](../../so/rdf-schema#seeAlso.md) = VSAO:0000172 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/72/UBERON_4200172.md b/md/UBERON/72/UBERON_4200172.md index 2a48ae057d..db34f83528 100644 --- a/md/UBERON/72/UBERON_4200172.md +++ b/md/UBERON/72/UBERON_4200172.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0000073.md b/md/UBERON/73/UBERON_0000073.md index 4e5fa7d149..2c31bd2458 100644 --- a/md/UBERON/73/UBERON_0000073.md +++ b/md/UBERON/73/UBERON_0000073.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000073 * *Label* = regional part of nervous system - * *Definition* = An anatomical structure that is part of a nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical structure that is part of a nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * part of nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1157] + * part of nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1157 ] ## Cross-references * NIF_GrossAnatomy:birnlex_1157 * SCTID:25087005 - * UMLS:C1518256 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nervous_System_Part] + * UMLS:C1518256 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nervous_System_Part ] * ncithesaurus:Nervous_System_Part ## Subsets @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-06-18T09:00:04Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0000173.md b/md/UBERON/73/UBERON_0000173.md index 85d9d0c640..b11c399858 100644 --- a/md/UBERON/73/UBERON_0000173.md +++ b/md/UBERON/73/UBERON_0000173.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000173 * *Label* = amniotic fluid - * *Definition* = Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided. The composition of the fluid changes over the course of gestation. Initially, amniotic fluid is similar to maternal plasma, mainly water with electrolytes. As the fetus develops, proteins, carbohydrates, lipids, phospholipids originating from the lungs, fetal cells, and urea are deposited in the fluid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * acqua amnii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000068[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * liquor amnii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000068[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * acqua amnii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000068, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * liquor amnii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000068, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:1155 * MA:0002893 * MESH:A12.098 - * UMLS:C0002638 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Amniotic_Fluid] + * UMLS:C0002638 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Amniotic_Fluid ] * VHOG:0001267 * ncithesaurus:Amniotic_Fluid @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0000373.md b/md/UBERON/73/UBERON_0000373.md index de90433455..fde8504ef4 100644 --- a/md/UBERON/73/UBERON_0000373.md +++ b/md/UBERON/73/UBERON_0000373.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000373 * *Label* = tapetum of corpus callosum - * *Definition* = On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_of_corpus_callosum] + * *Definition* = On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_of_corpus_callosum ] * *Comment* = not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis ## Synonyms - * tapetum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77208[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * tapetum corporis callosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tapetum_of_corpus_callosum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tapetum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77208, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * tapetum corporis callosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tapetum_of_corpus_callosum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0000473.md b/md/UBERON/73/UBERON_0000473.md index 01559f6a29..13ea528bb2 100644 --- a/md/UBERON/73/UBERON_0000473.md +++ b/md/UBERON/73/UBERON_0000473.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000473 * *Label* = testis - * *Definition* = gonad of a male animal, produces and releases sperm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testis] + * *Definition* = gonad of a male animal, produces and releases sperm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testis ] ## Synonyms - * genitalia of male organism gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * genitalia of male organism gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of genitalia of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of male genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of male genitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of male organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of male organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of male reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of reproductive system of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of genitalia of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of male genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of male genitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of male organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of male organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of male reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of reproductive system of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male genitalia gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male genitalia gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male genitals gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism genitalia gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism genitalia gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system of male organism gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system of male organism gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * testicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7210] - * orchis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001363] - * testes [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * testiculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001363] + * genitalia of male organism gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * genitalia of male organism gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of genitalia of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of male genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of male genitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of male organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of male organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of male reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of reproductive system of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of genitalia of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of male genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of male genitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of male organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of male organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of male reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of reproductive system of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male genitalia gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male genitalia gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male genitals gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism genitalia gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism genitalia gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system of male organism gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system of male organism gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * testicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7210 ] + * orchis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001363 ] + * testes [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * testiculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001363 ] ## Cross-references @@ -63,7 +63,7 @@ * OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA * SCTID:181431007 * TAO:0000598 - * UMLS:C0039597 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Testis] + * UMLS:C0039597 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Testis ] * VHOG:0000252 * WBbt:0006794 * Wikipedia:Testis @@ -89,7 +89,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gonad](../../UBERON/91/UBERON_0000991.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms @@ -103,8 +103,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The testes are descended in metatherian and eutherian mammals. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002117 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0000973.md b/md/UBERON/73/UBERON_0000973.md index 6f142e8e8d..f876a90a7c 100644 --- a/md/UBERON/73/UBERON_0000973.md +++ b/md/UBERON/73/UBERON_0000973.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000973 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_0001073.md b/md/UBERON/73/UBERON_0001073.md index 820eb9f71d..973f74b71d 100644 --- a/md/UBERON/73/UBERON_0001073.md +++ b/md/UBERON/73/UBERON_0001073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001073 * *Label* = ileocecal junction - * *Definition* = A point along the course of the gastrointestinal tract where the small intestine (ileum) ends as it opens into the cecal portion of the large intestine; occurs usually within the iliac fossa, demarcated internally as the ileocecal orifice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=46539] + * *Definition* = A point along the course of the gastrointestinal tract where the small intestine (ileum) ends as it opens into the cecal portion of the large intestine; occurs usually within the iliac fossa, demarcated internally as the ileocecal orifice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=46539 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [connects](../../ts/core#connects.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) and [connects](../../ts/core#connects.md) some [small intestine](../../UBERON/08/UBERON_0002108.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001173.md b/md/UBERON/73/UBERON_0001173.md index 146e18fe30..ef88337c46 100644 --- a/md/UBERON/73/UBERON_0001173.md +++ b/md/UBERON/73/UBERON_0001173.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001173 * *Label* = biliary tree - * *Definition* = Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14665[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biliary_tract] + * *Definition* = Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14665, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biliary_tract ] ## Synonyms @@ -17,7 +17,7 @@ * MA:0001273 * MESH:A03.159 * SCTID:181267003 - * UMLS:C0005423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Biliary_Tract] + * UMLS:C0005423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Biliary_Tract ] * Wikipedia:Biliary_tract * XAO:0000455 * ncithesaurus:Biliary_Tract @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001273.md b/md/UBERON/73/UBERON_0001273.md index 406c4282a3..05341e40e4 100644 --- a/md/UBERON/73/UBERON_0001273.md +++ b/md/UBERON/73/UBERON_0001273.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001273 * *Label* = ilium - * *Definition* = Paired endochondral bone that is the dorsal-most of the pelvic bones, offering attachment areas for gluteal muscles on its main surface [PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = Paired endochondral bone that is the dorsal-most of the pelvic bones, offering attachment areas for gluteal muscles on its main surface [PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Note that this is_a hip bone in MA. Taxon notes: All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium[WP] ## Synonyms @@ -24,7 +24,7 @@ * MESH:A02.835.232.611.434 * OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA * SCTID:182029005 - * UMLS:C0020889 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ilium] + * UMLS:C0020889 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ilium ] * Wikipedia:Ilium_(bone) * galen:Ilium * ncithesaurus:Ilium @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [iliac endochondral element](../../UBERON/54/UBERON_0015054.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = iliac * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8570 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001373.md b/md/UBERON/73/UBERON_0001373.md index 03fc1df5c0..d2d261fe30 100644 --- a/md/UBERON/73/UBERON_0001373.md +++ b/md/UBERON/73/UBERON_0001373.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001373 * *Label* = sartorius muscle - * *Definition* = The Sartorius muscle the longest muscle in the human body is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sartorius_muscle] + * *Definition* = The Sartorius muscle the longest muscle in the human body is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sartorius_muscle ] * *Comment* = Taxon notes (via VHOG): "The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius." Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]. No iliotibialis in AAO - M. sartorius has def: "Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis." [AAO:0010027]. We do NOT group this AAO class here at this stage until further evidence of shared attachments ## Synonyms - * sartorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002368] + * sartorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002368 ] * M. sartorius - * musculus sartorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sartorius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus sartorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sartorius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:22353 * MA:0002368 * SCTID:181683006 - * UMLS:C0224434 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sartorius_Muscle] + * UMLS:C0224434 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sartorius_Muscle ] * VHOG:0001192 * Wikipedia:Sartorius_muscle * galen:Sartorius @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001473.md b/md/UBERON/73/UBERON_0001473.md index c0f3b6793f..20324cd557 100644 --- a/md/UBERON/73/UBERON_0001473.md +++ b/md/UBERON/73/UBERON_0001473.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001473 * *Label* = lymphatic vessel - * *Definition* = A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000752[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphatic_vessel] + * *Definition* = A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000752, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphatic_vessel ] ## Synonyms * lymph vessel - * vas lymphaticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymphatic_vessel[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vas lymphaticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymphatic_vessel, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA * SCTID:279089004 * TAO:0005105 - * UMLS:C0229889 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymphatic_Vessel] + * UMLS:C0229889 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymphatic_Vessel ] * VHOG:0001249 * Wikipedia:Lymphatic_vessel * XAO:0000375 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A vessel that contains or conveys lymph.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Tetrapods have evolved distinct lymphatic systems, in which lymphatic capillaries help drain most of the tissues of the body.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001573.md b/md/UBERON/73/UBERON_0001573.md index 090657efd4..91e7467092 100644 --- a/md/UBERON/73/UBERON_0001573.md +++ b/md/UBERON/73/UBERON_0001573.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001573 * *Label* = styloglossus - * *Definition* = The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Styloglossus] + * *Definition* = The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Styloglossus ] ## Synonyms * syloglossus muscle - * musculus styloglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Styloglossus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus styloglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Styloglossus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:18884 * FMA:46692 * MA:0002387 - * UMLS:C0224195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Styloglossus] + * UMLS:C0224195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Styloglossus ] * Wikipedia:Styloglossus * http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001673.md b/md/UBERON/73/UBERON_0001673.md index e0b662c497..53bf889e54 100644 --- a/md/UBERON/73/UBERON_0001673.md +++ b/md/UBERON/73/UBERON_0001673.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001673 * *Label* = central retinal vein - * *Definition* = The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_vein] + * *Definition* = The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * retinal vein - * vena centralis retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_retinal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena centralis retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_retinal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002213 * MESH:A07.231.611.773 * SCTID:280913005 - * UMLS:C0035327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retinal_Vein] + * UMLS:C0035327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retinal_Vein ] * Wikipedia:Central_retinal_vein * http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray572.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray572.png/200px-Gray572.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001773.md b/md/UBERON/73/UBERON_0001773.md index 14a9a60a77..9199c3b69b 100644 --- a/md/UBERON/73/UBERON_0001773.md +++ b/md/UBERON/73/UBERON_0001773.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001773 * *Label* = sclera - * *Definition* = Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclera[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-050701-15] + * *Definition* = Opaque fibrous outer layer of the eyeball[ZFA,Kardong,WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclera, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-050701-15 ] * *Comment* = Development notes: Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]. Taxon notes: Multi-tissue structure that composes the opaque fibrous outer layer of the eye[ZFA] Seko et al demonstrate chondrogenic potential doi:10.1371/journal.pone.0003709 and identify this as connective tissue. Disease notes: implicated in rheumatoid arthritis. Structure notes: continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe. Taxon notes: in fish, reptiles and monotremes the connective tissue of the sclera is skeletal ## Synonyms @@ -22,7 +22,7 @@ * MESH:A09.371.784 * OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA * SCTID:181163006 - * UMLS:C0036410 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sclera] + * UMLS:C0036410 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sclera ] * VHOG:0001274 * Wikipedia:Sclera * XAO:0000183 @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tough, usually white, outer coat of the eyeball, covering all the posterior surface and continuous anteriorly with the cornea. [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = scleral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001873.md b/md/UBERON/73/UBERON_0001873.md index 7d1a000b84..be7cf669e8 100644 --- a/md/UBERON/73/UBERON_0001873.md +++ b/md/UBERON/73/UBERON_0001873.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001873 * *Label* = caudate nucleus - * *Definition* = Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1373] + * *Definition* = Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1373 ] ## Synonyms * caudatus - * Ammon horn fields [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CA] - * caudatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000211] - * nucleus caudatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000211] - * nucleus caudatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudate_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Ammon horn fields [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CA ] + * caudatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000211 ] + * nucleus caudatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000211 ] + * nucleus caudatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudate_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,11 +30,11 @@ * MAT:0000513 * MESH:A08.186.211.730.885.105.487.550.184 * NIF_GrossAnatomy:birnlex_1373 - * NeuroNames:226 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1373] + * NeuroNames:226 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1373 ] * OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA * SCTID:279297002 - * UMLS:C0007461 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1373] - * UMLS:C0007461 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Caudate_Nucleus] + * UMLS:C0007461 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1373 ] + * UMLS:C0007461 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Caudate_Nucleus ] * Wikipedia:Caudate_nucleus * http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent[FMA:61833]. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010122 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0001973.md b/md/UBERON/73/UBERON_0001973.md index 045625bf88..e36337d0ff 100644 --- a/md/UBERON/73/UBERON_0001973.md +++ b/md/UBERON/73/UBERON_0001973.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001973 * *Label* = substance of tooth - * *Definition* = Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63001] + * *Definition* = Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63001 ] * *Comment* = note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue ## Synonyms - * portion of substance of tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63001] + * portion of substance of tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63001 ] * tooth substance ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002073.md b/md/UBERON/73/UBERON_0002073.md index 0a44d870e4..5266c18c4b 100644 --- a/md/UBERON/73/UBERON_0002073.md +++ b/md/UBERON/73/UBERON_0002073.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002073 * *Label* = hair follicle - * *Definition* = a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hair_follicle] + * *Definition* = a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hair_follicle ] ## Synonyms - * folliculus pili [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hair_follicle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * folliculus pili [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hair_follicle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A10.272.497.500 * OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA * SCTID:280830006 - * UMLS:C0221971 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hair_Follicle] + * UMLS:C0221971 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hair_Follicle ] * VHOG:0001268 * Wikipedia:Hair_follicle * http://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg @@ -42,7 +42,7 @@ * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [epidermis](../../UBERON/03/UBERON_0001003.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pilosebaceous unit](../../UBERON/32/UBERON_0011932.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [strand of hair](../../UBERON/37/UBERON_0001037.md) * [develops from](../../RO/02/RO_0002202.md) some [hair follicle placode](../../UBERON/86/UBERON_0005086.md) ## Equivalencies @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The earliest reliable record of hair is found in a fossil of the Paleocene period, in which the structure of hair cuticles is preserved. Its appearance suggests that the complicated structure of the hair follicle, closely similar to that of present-day mammals, had already appeared at this time.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002173.md b/md/UBERON/73/UBERON_0002173.md index 3f745e510c..c2b8de818e 100644 --- a/md/UBERON/73/UBERON_0002173.md +++ b/md/UBERON/73/UBERON_0002173.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002173 * *Label* = pulmonary alveolar duct - * *Definition* = Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_duct] + * *Definition* = Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_duct ] ## Synonyms - * alveolar duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000417] + * alveolar duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000417 ] * respiratory alveolar duct ## Cross-references @@ -16,7 +16,7 @@ * FMA:7341 * MA:0000417 * OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA - * UMLS:C0391892 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Duct] + * UMLS:C0391892 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Duct ] * Wikipedia:Alveolar_duct * http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png * ncithesaurus:Alveolar_Duct @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002273.md b/md/UBERON/73/UBERON_0002273.md index fbe3a272f2..72f029eba7 100644 --- a/md/UBERON/73/UBERON_0002273.md +++ b/md/UBERON/73/UBERON_0002273.md @@ -8,8 +8,8 @@ ## Synonyms * hypothalamus lateral zone - * Hypothalamic lateral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LZ] - * lateral zone of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LZ] + * Hypothalamic lateral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LZ ] + * lateral zone of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LZ ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002373.md b/md/UBERON/73/UBERON_0002373.md index 64ea3723f2..36af0b9d1a 100644 --- a/md/UBERON/73/UBERON_0002373.md +++ b/md/UBERON/73/UBERON_0002373.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002373 * *Label* = palatine tonsil - * *Definition* = tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_tonsil] + * *Definition* = tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_tonsil ] * *Comment* = Development notes: tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches[ISBN10:1607950324] ## Synonyms * faucial tonsil * tonsil - * Gaumenmandel@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004714] - * tonsilla palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_tonsil[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Gaumenmandel@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004714 ] + * tonsilla palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_tonsil, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MAT:0000291 * MIAA:0000291 * SCTID:265787001 - * UMLS:C0040421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palatine_Tonsil] + * UMLS:C0040421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palatine_Tonsil ] * VHOG:0001140 * Wikipedia:Palatine_tonsil * http://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002473.md b/md/UBERON/73/UBERON_0002473.md index 128c8bd552..959873afe8 100644 --- a/md/UBERON/73/UBERON_0002473.md +++ b/md/UBERON/73/UBERON_0002473.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002473 * *Label* = intercerebral commissure - * *Definition* = A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A commissure that connects the two cerebral hemispheres. Examples: anterior commissure, corpus callosum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * commissure of cerebrum * inter-hemispheric commissure - * interhemispheric commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002721] + * interhemispheric commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002721 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) and [connects](../../ts/core#connects.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) and [nervous system commissure](../../UBERON/20/UBERON_0001020.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002573.md b/md/UBERON/73/UBERON_0002573.md index 9f8878c0a5..a1abbf1a5d 100644 --- a/md/UBERON/73/UBERON_0002573.md +++ b/md/UBERON/73/UBERON_0002573.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002573 * *Label* = pontine reticular formation - * *Definition* = The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pontine_reticular_formation] + * *Definition* = The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pontine_reticular_formation ] ## Synonyms - * pons of varolius reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pontine reticular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:PRNr] - * reticular formation of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68876] - * reticular formation of pons of varolius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Pontine reticular nucleus rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNr] - * formatio reticularis pontis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:561[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pontine reticular nucleus rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNr] + * pons of varolius reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pontine reticular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:PRNr ] + * reticular formation of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68876 ] + * reticular formation of pons of varolius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Pontine reticular nucleus rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNr ] + * formatio reticularis pontis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:561, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pontine reticular nucleus rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNr ] ## Cross-references @@ -26,9 +26,9 @@ * BM:Pons-PRF * FMA:68876 * NIF_GrossAnatomy:birnlex_1050 - * NeuroNames:561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1050] + * NeuroNames:561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1050 ] * SCTID:362403007 - * UMLS:C0228428 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1050] + * UMLS:C0228428 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1050 ] * Wikipedia:Pontine_reticular_formation * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pons](../../UBERON/88/UBERON_0000988.md) and [reticular formation](../../UBERON/75/UBERON_0002275.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002673.md b/md/UBERON/73/UBERON_0002673.md index 19682c6b7c..067d72e175 100644 --- a/md/UBERON/73/UBERON_0002673.md +++ b/md/UBERON/73/UBERON_0002673.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002673 * *Label* = vestibular nuclear complex - * *Definition* = The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_nuclei[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.sciencedirect.com/science/article/pii/S0079612305510069[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413105&group_id=36855] + * *Definition* = The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_nuclei, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.sciencedirect.com/science/article/pii/S0079612305510069, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413105&group_id=36855 ] * *Comment* = Editor notes: In TA they are grouped in both the pons and medulla; WP+MA says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF. ## Synonyms - * nuclei vestibulares in medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72239[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibular nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72239] - * vestibular nuclei in medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72239] - * nuclei vestibulares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vestibular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021750] + * nuclei vestibulares in medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72239, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibular nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72239 ] + * vestibular nuclei in medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72239 ] + * nuclei vestibulares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vestibular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021750 ] ## Cross-references @@ -27,8 +27,8 @@ * GAID:602 * MESH:A08.186.211.132.810.428.600.800 * NIF_GrossAnatomy:birnlex_1337 - * NeuroNames:714 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1337] - * UMLS:C0042600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1337] + * NeuroNames:714 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1337 ] + * UMLS:C0042600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1337 ] * Wikipedia:Vestibular_nuclei * http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002773.md b/md/UBERON/73/UBERON_0002773.md index fc384da616..6121dbbf88 100644 --- a/md/UBERON/73/UBERON_0002773.md +++ b/md/UBERON/73/UBERON_0002773.md @@ -6,21 +6,21 @@ ## Synonyms - * anterior transverse convolution of heschl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1657] + * anterior transverse convolution of heschl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1657 ] * anterior transverse temporal convolution of heschl * first transverse gyrus of heschl * great transverse gyrus of heschl - * gyrus temporalis transversus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus temporalis transversus primus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:134[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus temporalis transversus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus temporalis transversus primus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:134, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ATTG * FMA:61909 * NIF_GrossAnatomy:birnlex_1657 - * NeuroNames:134 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1657] + * NeuroNames:134 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1657 ] * SCTID:279192003 - * UMLS:C0262198 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1657] + * UMLS:C0262198 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1657 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002873.md b/md/UBERON/73/UBERON_0002873.md index 9ceb4a678c..b9f6eba20d 100644 --- a/md/UBERON/73/UBERON_0002873.md +++ b/md/UBERON/73/UBERON_0002873.md @@ -6,14 +6,14 @@ ## Synonyms - * Spinal nucleus of the trigeminal interpolar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPVI] - * interpolar part of the spinal trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817] - * nucleus interpolaris tractus spinalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of spinal tract of N. V (subnucleus interpolaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817] - * nucleus spinalis nervi trigemini, pars interpolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinal nucleus of the trigeminal nerve interpolar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPVI] - * spinal nucleus of the trigeminal, interpolar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817] - * spinal trigeminal nucleus, interpolar part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:817] + * Spinal nucleus of the trigeminal interpolar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPVI ] + * interpolar part of the spinal trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817 ] + * nucleus interpolaris tractus spinalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of spinal tract of N. V (subnucleus interpolaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817 ] + * nucleus spinalis nervi trigemini, pars interpolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinal nucleus of the trigeminal nerve interpolar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPVI ] + * spinal nucleus of the trigeminal, interpolar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817 ] + * spinal trigeminal nucleus, interpolar part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:817 ] ## Cross-references @@ -23,8 +23,8 @@ * BAMS:Sp5I * FMA:235324 * NIF_GrossAnatomy:birnlex_2646 - * NeuroNames:817 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2646] - * UMLS:C0175418 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2646] + * NeuroNames:817 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2646 ] + * UMLS:C0175418 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2646 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0002973.md b/md/UBERON/73/UBERON_0002973.md index a9e0d96b20..b3d5d4fe50 100644 --- a/md/UBERON/73/UBERON_0002973.md +++ b/md/UBERON/73/UBERON_0002973.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002973 * *Label* = parahippocampal gyrus - * *Definition* = a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parahippocampal_gyrus] + * *Definition* = a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parahippocampal_gyrus ] ## Synonyms - * hippocampal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61918] - * gyrus hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:164[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus parahippocampalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parahippocampal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus parahippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:164[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hippocampal convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004380] + * hippocampal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61918 ] + * gyrus hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:164, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus parahippocampalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parahippocampal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus parahippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:164, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hippocampal convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004380 ] ## Cross-references @@ -23,10 +23,10 @@ * GAID:634 * MESH:A08.186.211.577.710 * NIF_GrossAnatomy:birnlex_807 - * NeuroNames:164 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_807] + * NeuroNames:164 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_807 ] * SCTID:279205000 - * UMLS:C0228249 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_807] - * UMLS:C0228249 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parahippocampal_Gyrus] + * UMLS:C0228249 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_807 ] + * UMLS:C0228249 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parahippocampal_Gyrus ] * Wikipedia:Parahippocampal_gyrus * http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003073.md b/md/UBERON/73/UBERON_0003073.md index d3c6c2a6cc..9c6a15e2e9 100644 --- a/md/UBERON/73/UBERON_0003073.md +++ b/md/UBERON/73/UBERON_0003073.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003073 * *Label* = lens placode - * *Definition* = A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_placode[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_placode, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175] ## Synonyms - * placoda lentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lens_placode[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * placoda lentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lens_placode, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * EHDAA:2908 * EMAPA:16672 * TAO:0000122 - * UMLS:C1517770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lens_Placodes] + * UMLS:C1517770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lens_Placodes ] * VHOG:0000166 * Wikipedia:Lens_placode * XAO:0000240 @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectodermal placode](../../UBERON/85/UBERON_0005085.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [lens of camera-type eye](../../UBERON/65/UBERON_0000965.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003173.md b/md/UBERON/73/UBERON_0003173.md index 1868d2e9c2..82a8eb3283 100644 --- a/md/UBERON/73/UBERON_0003173.md +++ b/md/UBERON/73/UBERON_0003173.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004561 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000853 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003173 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_0003273.md b/md/UBERON/73/UBERON_0003273.md index c93c5f9a0d..d5eb33547d 100644 --- a/md/UBERON/73/UBERON_0003273.md +++ b/md/UBERON/73/UBERON_0003273.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003273 * *Label* = skeletal muscle tissue of tongue - * *Definition* = A portion of skeletal muscle tissue that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Consider merging with 'muscle of tongue', depending on outcome of issue 331 ## Synonyms - * skeletal muscle tissue of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tongue skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * skeletal muscle tissue of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tongue skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:17883 * EMAPA:18879 * MA:0001596 - * UMLS:C1710437 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tongue_Skeletal_Muscle_Tissue] + * UMLS:C1710437 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tongue_Skeletal_Muscle_Tissue ] * VHOG:0001390 * ncithesaurus:Tongue_Skeletal_Muscle_Tissue @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003373.md b/md/UBERON/73/UBERON_0003373.md index 7c8a63312c..2eec1a3ee5 100644 --- a/md/UBERON/73/UBERON_0003373.md +++ b/md/UBERON/73/UBERON_0003373.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003373 * *Label* = ectoderm of footplate - * *Definition* = An ectoderm that is part of a footplate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a footplate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [footplate](../../UBERON/71/UBERON_0006871.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003473.md b/md/UBERON/73/UBERON_0003473.md index fe244f9caf..a03807b09c 100644 --- a/md/UBERON/73/UBERON_0003473.md +++ b/md/UBERON/73/UBERON_0003473.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003473 * *Label* = thoracic cavity artery - * *Definition* = An artery that is part of a thoracic cavity[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376] + * *Definition* = An artery that is part of a thoracic cavity[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376 ] * *Comment* = Note that in MA, aorta is classified here - but this is problematic because the abdominal aorta is not in the thoracic cavity ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003573.md b/md/UBERON/73/UBERON_0003573.md index 2e9009514d..a5b874d514 100644 --- a/md/UBERON/73/UBERON_0003573.md +++ b/md/UBERON/73/UBERON_0003573.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003573 * *Label* = arm connective tissue - * *Definition* = A portion of connective tissue that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003673.md b/md/UBERON/73/UBERON_0003673.md index 079e76a252..8a2a2f97f4 100644 --- a/md/UBERON/73/UBERON_0003673.md +++ b/md/UBERON/73/UBERON_0003673.md @@ -6,7 +6,7 @@ ## Synonyms - * flaval ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:126] + * flaval ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:126 ] ## Cross-references @@ -14,7 +14,7 @@ * GAID:126 * MESH:A02.513.514.287 * SCTID:244598002 - * UMLS:C0206327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ligamentum_Flavum] + * UMLS:C0206327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ligamentum_Flavum ] * ncithesaurus:Ligamentum_Flavum ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0003973.md b/md/UBERON/73/UBERON_0003973.md index 23233c95e3..9a5919ac06 100644 --- a/md/UBERON/73/UBERON_0003973.md +++ b/md/UBERON/73/UBERON_0003973.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003973 * *Label* = nasal concha of ethmoid bone - * *Definition* = One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008971[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + palaeos.com/vertebrates/bones/braincase/ethmoid.html] + * *Definition* = One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008971, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = palaeos.com/vertebrates/bones/braincase/ethmoid.html ] * *Comment* = Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here ## Synonyms * ethmo-turbinate - * ethmoturbinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] - * ethmoturbinate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008971] + * ethmoturbinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/braincase/ethmoid.html ] + * ethmoturbinate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008971 ] * nasal turbinate of ethmoid bone * turbinate of ethmoid bone @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nasal concha](../../UBERON/62/UBERON_0001762.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ethmoid bone](../../UBERON/79/UBERON_0001679.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004073.md b/md/UBERON/73/UBERON_0004073.md index 304313c4fb..bd2343d7ee 100644 --- a/md/UBERON/73/UBERON_0004073.md +++ b/md/UBERON/73/UBERON_0004073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004073 * *Label* = cerebellum interpositus nucleus - * *Definition* = the nucelus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009984] + * *Definition* = the nucelus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009984 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004173.md b/md/UBERON/73/UBERON_0004173.md index cdb453324c..4c89beb3a7 100644 --- a/md/UBERON/73/UBERON_0004173.md +++ b/md/UBERON/73/UBERON_0004173.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004173 * *Label* = medulla reticulospinal tract - * *Definition* = axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021976] + * *Definition* = axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021976 ] ## Synonyms - * medullary reticulospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73989] + * medullary reticulospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73989 ] ## Cross-references @@ -21,8 +21,8 @@ * [axon tract](../../UBERON/18/UBERON_0001018.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Equivalencies @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004273.md b/md/UBERON/73/UBERON_0004273.md index 4c220f49ec..8ce16cb384 100644 --- a/md/UBERON/73/UBERON_0004273.md +++ b/md/UBERON/73/UBERON_0004273.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004273 * *Label* = cartilaginous joint suture - * *Definition* = A cranial suture that is part of a cartilaginous joint [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cranial suture that is part of a cartilaginous joint [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * articulatio cartilaginea cranial suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulatio cartilaginea cranial sutures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulatio cartilaginea cranial sutures set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulatio cartilaginea cranium suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulatio cartilaginea suture of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous joint cranial suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous joint cranial sutures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous joint cranial sutures set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous joint cranium suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cartilaginous joint suture of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial suture of articulatio cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial suture of cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial sutures of articulatio cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial sutures of cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial sutures set of articulatio cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial sutures set of cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranium suture of articulatio cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranium suture of cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * suture of cranium of articulatio cartilaginea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * suture of cranium of cartilaginous joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * articulatio cartilaginea cranial suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulatio cartilaginea cranial sutures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulatio cartilaginea cranial sutures set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulatio cartilaginea cranium suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulatio cartilaginea suture of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous joint cranial suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous joint cranial sutures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous joint cranial sutures set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous joint cranium suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cartilaginous joint suture of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial suture of articulatio cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial suture of cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial sutures of articulatio cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial sutures of cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial sutures set of articulatio cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial sutures set of cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranium suture of articulatio cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranium suture of cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * suture of cranium of articulatio cartilaginea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * suture of cranium of cartilaginous joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cranial suture](../../UBERON/85/UBERON_0003685.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cartilaginous joint](../../UBERON/13/UBERON_0002213.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004473.md b/md/UBERON/73/UBERON_0004473.md index d355f50e90..c2170f397a 100644 --- a/md/UBERON/73/UBERON_0004473.md +++ b/md/UBERON/73/UBERON_0004473.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004473 * *Label* = musculature of face - * *Definition* = Any collection of muscles that is part of a face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = originally created to reflect the distinction drawn in FMA between a facial muscle and the entire musculature of the face. However, naming both does not serve any particular purpose ## Synonyms - * entire facial musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * facial muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71288] - * muscle group of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71288] - * musculi faciei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71288[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of facial muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71288] - * set of muscles of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71288] + * entire facial musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * facial muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71288 ] + * muscle group of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71288 ] + * musculi faciei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71288, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of facial muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71288 ] + * set of muscles of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71288 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004573.md b/md/UBERON/73/UBERON_0004573.md index 1b8e48ce36..f4f5ab8c9c 100644 --- a/md/UBERON/73/UBERON_0004573.md +++ b/md/UBERON/73/UBERON_0004573.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004573 * *Label* = systemic artery - * *Definition* = Systemic arteries are the arteries of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Artery#Systemic_arteries] + * *Definition* = Systemic arteries are the arteries of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Artery#Systemic_arteries ] ## Synonyms - * systemic arterial subtree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66464] + * systemic arterial subtree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66464 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [systemic arterial system](../../UBERON/71/UBERON_0004571.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004673.md b/md/UBERON/73/UBERON_0004673.md index f6c6d3f3d6..a1b3df9419 100644 --- a/md/UBERON/73/UBERON_0004673.md +++ b/md/UBERON/73/UBERON_0004673.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004673 * *Label* = trigeminal nerve root - * *Definition* = A nerve root that continuous_with a trigeminal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve root that continuous_with a trigeminal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - check ZFA ## Synonyms - * root of trigeminal V nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Obol:cjm] - * root of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52610] - * trigeminal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1346] - * trigeminal neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52610] - * descending trigeminal root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000192] + * root of trigeminal V nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Obol:cjm ] + * root of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52610 ] + * trigeminal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1346 ] + * trigeminal neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52610 ] + * descending trigeminal root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000192 ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [trigeminal nerve](../../UBERON/45/UBERON_0001645.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004773.md b/md/UBERON/73/UBERON_0004773.md index 5cde7dea0f..1d661dd14a 100644 --- a/md/UBERON/73/UBERON_0004773.md +++ b/md/UBERON/73/UBERON_0004773.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004773 * *Label* = superior eyelid tarsus - * *Definition* = An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An eyelid tarsus that is part of a upper eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * superior tarsal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59087] - * superior tarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59087] + * superior tarsal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59087 ] + * superior tarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59087 ] * superior tarsus of eyelid - * tarsal plate of upper eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59087] + * tarsal plate of upper eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59087 ] * tarsus of upper eyelid - * tarsus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59087[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tarsus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59087, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [eyelid tarsus](../../UBERON/72/UBERON_0004772.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper eyelid](../../UBERON/12/UBERON_0001712.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0004873.md b/md/UBERON/73/UBERON_0004873.md index 378de0483a..43014bdcdc 100644 --- a/md/UBERON/73/UBERON_0004873.md +++ b/md/UBERON/73/UBERON_0004873.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004873 * *Label* = splanchnopleure - * *Definition* = a structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splanchnopleure] + * *Definition* = a structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splanchnopleure ] * *Comment* = todo - check relationship to LPM ## Synonyms - * ventral splanchnic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intraembryonic_coelom] + * ventral splanchnic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intraembryonic_coelom ] ## Cross-references * EHDAA2:0001903 * EHDAA:383 * EMAPA:16181 - * UMLS:C1519472 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splanchnopleure] + * UMLS:C1519472 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splanchnopleure ] * VHOG:0000558 * Wikipedia:Splanchnopleure * http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png @@ -29,7 +29,7 @@ * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) * [part_of](../../BFO/50/BFO_0000050.md) some [lateral plate mesoderm](../../UBERON/81/UBERON_0003081.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) ## Equivalencies @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005073.md b/md/UBERON/73/UBERON_0005073.md index f228da34a5..0213aa1d5e 100644 --- a/md/UBERON/73/UBERON_0005073.md +++ b/md/UBERON/73/UBERON_0005073.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005173.md b/md/UBERON/73/UBERON_0005173.md index 049b9beed8..765598a62d 100644 --- a/md/UBERON/73/UBERON_0005173.md +++ b/md/UBERON/73/UBERON_0005173.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005173 * *Label* = abdominal segment organ - * *Definition* = An organ that part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that part of the adbominal segment of the organism. This region can be further subdivided into the abdominal cavity and the pelvic region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005273.md b/md/UBERON/73/UBERON_0005273.md index 872163503e..41d5cb1a74 100644 --- a/md/UBERON/73/UBERON_0005273.md +++ b/md/UBERON/73/UBERON_0005273.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005273 * *Label* = nail bed - * *Definition* = Region of skin beneath the nail plate[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:gvg] + * *Definition* = Region of skin beneath the nail plate[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:gvg ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005373.md b/md/UBERON/73/UBERON_0005373.md index 79073d1094..983038d5e0 100644 --- a/md/UBERON/73/UBERON_0005373.md +++ b/md/UBERON/73/UBERON_0005373.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005373 * *Label* = spinal cord dorsal column - * *Definition* = area of white matter in the dorsomedial side of the spinal cord. It is made up of the fasciculus gracilis and fasciculus cuneatus and itself is part of the dorsal funiculus. It is part of an ascending pathway that is important for well-localized fine touch and conscious proprioception called the posterior column-medial lemniscus pathway[WP]. The dorsal portion of the gray substance of the spinal cord, in transverse section seen as a horn[TFD]. The dorsal column is a part of the spinal cord which is responsible for transporting sensory input from the body to the cerebral cortex. This part of the spinal cord is key in perceiving fine touch, such as that used to distinguish textures, along with vibration. The dorsal column also contributes to the body's system of proprioception, used to orient the body in space and to coordinate muscle movements, given information about the body's position. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_column] + * *Definition* = area of white matter in the dorsomedial side of the spinal cord. It is made up of the fasciculus gracilis and fasciculus cuneatus and itself is part of the dorsal funiculus. It is part of an ascending pathway that is important for well-localized fine touch and conscious proprioception called the posterior column-medial lemniscus pathway[WP]. The dorsal portion of the gray substance of the spinal cord, in transverse section seen as a horn[TFD]. The dorsal column is a part of the spinal cord which is responsible for transporting sensory input from the body to the cerebral cortex. This part of the spinal cord is key in perceiving fine touch, such as that used to distinguish textures, along with vibration. The dorsal column also contributes to the body's system of proprioception, used to orient the body in space and to coordinate muscle movements, given information about the body's position. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_column ] * *Comment* = TODO - relationship with dorsal horn? ## Synonyms * dorsal column * dorsal column of spinal cord - * posterior column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_column] + * posterior column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_column ] * spinal cord posterior column - * dorsal column system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dc] - * dorsal columns [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dc] + * dorsal column system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dc ] + * dorsal columns [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dc ] ## Cross-references @@ -21,7 +21,7 @@ * EV:0100317 * MA:0002749 * NeuroNames:2681 - * UMLS:C0458459 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Column] + * UMLS:C0458459 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Column ] * VHOG:0001623 * Wikipedia:Posterior_column * ncithesaurus:Posterior_Column @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dorsolateral ridge of gray matter in each lateral half of the spinal cord. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005473.md b/md/UBERON/73/UBERON_0005473.md index 4ea7d23fb3..9793058923 100644 --- a/md/UBERON/73/UBERON_0005473.md +++ b/md/UBERON/73/UBERON_0005473.md @@ -7,14 +7,14 @@ ## Synonyms - * back of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24228] - * pelvic back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24228] - * posterior part of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24228] - * regio sacralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24228[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sacral part of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24228] - * croup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rump_(animal)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hindquarter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rump_(animal)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * rump [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rump_(animal)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * back of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24228 ] + * pelvic back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24228 ] + * posterior part of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24228 ] + * regio sacralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24228, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sacral part of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24228 ] + * croup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rump_(animal), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hindquarter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rump_(animal), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * rump [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rump_(animal), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005573.md b/md/UBERON/73/UBERON_0005573.md index 2f4061c0b3..79a177634d 100644 --- a/md/UBERON/73/UBERON_0005573.md +++ b/md/UBERON/73/UBERON_0005573.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005573 * *Label* = rhombomere 3 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000888] - * floor plate rhombomere 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000888] - * floorplate r3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000888] + * floor plate r3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000888 ] + * floor plate rhombomere 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000888 ] + * floorplate r3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000888 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 3](../../UBERON/07/UBERON_0005507.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005673.md b/md/UBERON/73/UBERON_0005673.md index 3884c2002e..f4ddd8dd06 100644 --- a/md/UBERON/73/UBERON_0005673.md +++ b/md/UBERON/73/UBERON_0005673.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005673 * *Label* = left lung endothelium - * *Definition* = An endothelium that is part of a left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005873.md b/md/UBERON/73/UBERON_0005873.md index 7ee2f96ebe..f42e57977a 100644 --- a/md/UBERON/73/UBERON_0005873.md +++ b/md/UBERON/73/UBERON_0005873.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005873 * *Label* = 2nd arch pharyngeal cleft - * *Definition* = A groove that is situated between the 2nd and 3rd pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:OG] + * *Definition* = A groove that is situated between the 2nd and 3rd pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:OG ] ## Synonyms - * 2nd arch branchial groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000054] - * 2nd arch groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000057] - * 2nd pharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000972] - * 2nd pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000568] - * branchial groove of 2nd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16396] - * 2nd pharyngeal cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000972] + * 2nd arch branchial groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000054 ] + * 2nd arch groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000057 ] + * 2nd pharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000972 ] + * 2nd pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000568 ] + * branchial groove of 2nd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16396 ] + * 2nd pharyngeal cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000972 ] ## Cross-references @@ -29,12 +29,12 @@ ## Superclasses * [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) and [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0005973.md b/md/UBERON/73/UBERON_0005973.md index bb6046f5b2..e53fcf25f9 100644 --- a/md/UBERON/73/UBERON_0005973.md +++ b/md/UBERON/73/UBERON_0005973.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005973 * *Label* = blood-inner ear barrier - * *Definition* = the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004999] + * *Definition* = the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004999 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006073.md b/md/UBERON/73/UBERON_0006073.md index 0c667c8312..a56dd19db1 100644 --- a/md/UBERON/73/UBERON_0006073.md +++ b/md/UBERON/73/UBERON_0006073.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006073 * *Label* = thoracic region of vertebral column - * *Definition* = That part of the spine comprising the thoracic vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] + * *Definition* = That part of the spine comprising the thoracic vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/ ] ## Synonyms - * columna vertebralis thoracicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9140] - * thoracic spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9140] - * thoracic vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9140] + * columna vertebralis thoracicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9140 ] + * thoracic spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9140 ] + * thoracic vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9140 ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:17396 * FMA:9140 * SCTID:243931006 - * UMLS:C0581269 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Spine] + * UMLS:C0581269 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Spine ] * ncithesaurus:Thoracic_Spine ## Subsets @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the vertebral column between the atlas and the sacrum consisting of seven to 285 vertebrae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006173.md b/md/UBERON/73/UBERON_0006173.md index ce34e73917..919ef1c243 100644 --- a/md/UBERON/73/UBERON_0006173.md +++ b/md/UBERON/73/UBERON_0006173.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006173 * *Label* = pronephric proximal tubule - * *Definition* = A pronephric nephron tubule is an epithelial tube that is part of the pronephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039011] + * *Definition* = A pronephric nephron tubule is an epithelial tube that is part of the pronephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039011 ] ## Synonyms - * pronephros proximal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039011] + * pronephros proximal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039011 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [proximal tubule](../../UBERON/34/UBERON_0004134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006273.md b/md/UBERON/73/UBERON_0006273.md index dd50b1d3f0..b2f0e80465 100644 --- a/md/UBERON/73/UBERON_0006273.md +++ b/md/UBERON/73/UBERON_0006273.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006273 * *Label* = otic pit - * *Definition* = The auditory pit, also known as the otic pit, is the first rudiment of the internal ear. It appears shortly after that of the eye, in the form of a patch of thickened ectoderm, the auditory plate, over the region of the hind-brain. The auditory plate becomes depressed and converted into the auditory pit (or otic pit). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otic_pit] + * *Definition* = The auditory pit, also known as the otic pit, is the first rudiment of the internal ear. It appears shortly after that of the eye, in the form of a patch of thickened ectoderm, the auditory plate, over the region of the hind-brain. The auditory plate becomes depressed and converted into the auditory pit (or otic pit). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otic_pit ] ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0001336 * EHDAA:929 * EMAPA:16536 - * UMLS:C1518676 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Otic_Pit] + * UMLS:C1518676 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Otic_Pit ] * VHOG:0001147 * Wikipedia:Otic_pit * ncithesaurus:Otic_Pit @@ -37,8 +37,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A depression appearing in each otic placode, marking the beginnning of embryonic development of the internal ear. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006373.md b/md/UBERON/73/UBERON_0006373.md index 512054b9df..46960e8737 100644 --- a/md/UBERON/73/UBERON_0006373.md +++ b/md/UBERON/73/UBERON_0006373.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006473.md b/md/UBERON/73/UBERON_0006473.md index 9a023d3f9c..ee4334c11a 100644 --- a/md/UBERON/73/UBERON_0006473.md +++ b/md/UBERON/73/UBERON_0006473.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006473 * *Label* = Brodmann (1909) area 18 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_18] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_18 ] ## Synonyms - * B09-18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1749] - * BA18 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1749] - * Brodmann area 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * Brodmann area 18, parastriate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1749] - * Brodmann's area 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * area 18 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * area 18 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1749] - * area parastriata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1749] - * area parastriata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_18[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parastriate area 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * secondary visual area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * visual area ii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68615] - * B09-18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1749[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 18 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1027] - * area occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1027[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * occipital area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1027] + * B09-18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1749 ] + * BA18 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1749 ] + * Brodmann area 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * Brodmann area 18, parastriate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1749 ] + * Brodmann's area 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * area 18 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * area 18 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1749 ] + * area parastriata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1749 ] + * area parastriata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_18, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parastriate area 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * secondary visual area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * visual area ii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68615 ] + * B09-18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1749, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 18 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1027 ] + * area occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1027, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * occipital area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1027 ] ## Cross-references * FMA:68615 * NIF_GrossAnatomy:birnlex_1749 - * NeuroNames:1027 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1749] + * NeuroNames:1027 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1749 ] * SCTID:384773000 - * UMLS:C1272536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1749] + * UMLS:C1272536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1749 ] * Wikipedia:Brodmann_area_18 ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006673.md b/md/UBERON/73/UBERON_0006673.md index 92e8f2747f..290ae57933 100644 --- a/md/UBERON/73/UBERON_0006673.md +++ b/md/UBERON/73/UBERON_0006673.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006673 * *Label* = mandibular canal - * *Definition* = In humans, the mandibular canal is a canal within the mandible that contains the inferior alveolar nerve, inferior alveolar artery, and inferior alveolar vein. It runs obliquely downward and forward in the ramus, and then horizontally forward in the body, where it is placed under the alveoli and communicates with them by small openings [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_canal] + * *Definition* = In humans, the mandibular canal is a canal within the mandible that contains the inferior alveolar nerve, inferior alveolar artery, and inferior alveolar vein. It runs obliquely downward and forward in the ramus, and then horizontally forward in the body, where it is placed under the alveoli and communicates with them by small openings [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_canal ] * *Comment* = AO notes: TAO has mandibular sensory canal, which is part of the lateral line system ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006773.md b/md/UBERON/73/UBERON_0006773.md index 938dcc2fd7..6698e7183c 100644 --- a/md/UBERON/73/UBERON_0006773.md +++ b/md/UBERON/73/UBERON_0006773.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006773 * *Label* = long bone epiphyseal plate ossification zone - * *Definition* = layer of the epiphyseal plate where new bone matrix is deposited[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006399] + * *Definition* = layer of the epiphyseal plate where new bone matrix is deposited[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006399 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0006973.md b/md/UBERON/73/UBERON_0006973.md index 77d243bb7a..b83b38ab05 100644 --- a/md/UBERON/73/UBERON_0006973.md +++ b/md/UBERON/73/UBERON_0006973.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006973 * *Label* = protonephridium - * *Definition* = a network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera. The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephridium#Metanephridia] + * *Definition* = a network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera. The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephridium#Metanephridia ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007173.md b/md/UBERON/73/UBERON_0007173.md index c0015038ad..07d2a2b192 100644 --- a/md/UBERON/73/UBERON_0007173.md +++ b/md/UBERON/73/UBERON_0007173.md @@ -6,11 +6,11 @@ ## Synonyms - * axillary border of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23239] - * lateral border of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23239] - * margo lateralis (scapula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23239] - * margo lateralis scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23239[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral part of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23239] + * axillary border of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23239 ] + * lateral border of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23239 ] + * margo lateralis (scapula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23239 ] + * margo lateralis scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23239, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral part of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23239 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007273.md b/md/UBERON/73/UBERON_0007273.md index 1bf1a885b9..bc586fde72 100644 --- a/md/UBERON/73/UBERON_0007273.md +++ b/md/UBERON/73/UBERON_0007273.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007273 * *Label* = pelvic appendage skeleton - * *Definition* = The collection of all skeletal elements in a pelvic appendage region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a pelvic appendage region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007373.md b/md/UBERON/73/UBERON_0007373.md index 7e6adf3a27..7c6331dc5b 100644 --- a/md/UBERON/73/UBERON_0007373.md +++ b/md/UBERON/73/UBERON_0007373.md @@ -6,7 +6,7 @@ ## Synonyms - * ventral surface of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54648] + * ventral surface of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54648 ] * ventrum linguae ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007473.md b/md/UBERON/73/UBERON_0007473.md index ee9b43990d..de9b4fb484 100644 --- a/md/UBERON/73/UBERON_0007473.md +++ b/md/UBERON/73/UBERON_0007473.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007473 * *Label* = lumen of epithelial sac - * *Definition* = The space within an epithelial sphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = The space within an epithelial sphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms - * cavity of vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000079] + * cavity of vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000079 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [epithelial sac](../../UBERON/99/UBERON_0007499.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003079 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007573.md b/md/UBERON/73/UBERON_0007573.md index b7def711ce..d022376345 100644 --- a/md/UBERON/73/UBERON_0007573.md +++ b/md/UBERON/73/UBERON_0007573.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007573 * *Label* = migrating epithelium - * *Definition* = An epithelium that extends its surface area by peripheral movement. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = An epithelium that extends its surface area by peripheral movement. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003251 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0007773.md b/md/UBERON/73/UBERON_0007773.md index 95952216fd..e0ea93bee3 100644 --- a/md/UBERON/73/UBERON_0007773.md +++ b/md/UBERON/73/UBERON_0007773.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007773 * *Label* = scrotal sweat gland - * *Definition* = A sweat gland that is part of a scrotum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sweat gland that is part of a scrotum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [scrotum](../../UBERON/00/UBERON_0001300.md) and [sweat gland](../../UBERON/20/UBERON_0001820.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0008573.md b/md/UBERON/73/UBERON_0008573.md index 669569fd39..f26951ebfb 100644 --- a/md/UBERON/73/UBERON_0008573.md +++ b/md/UBERON/73/UBERON_0008573.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008573 * *Label* = lateral crico-arytenoid - * *Definition* = The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] + * *Definition* = The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] ## Synonyms - * lateral cricoarytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46579] - * lateral cricoarytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] - * lateral cricoarytenoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46579] - * cricoarytaenoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] - * cricoarytaenoideus lateralis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] - * cricoarytnoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] - * cricoarytnoideus lateralis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle] - * musculus cricoarytenoideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_cricoarytenoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral cricoarytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46579 ] + * lateral cricoarytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] + * lateral cricoarytenoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46579 ] + * cricoarytaenoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] + * cricoarytaenoideus lateralis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] + * cricoarytnoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] + * cricoarytnoideus lateralis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle ] + * musculus cricoarytenoideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_cricoarytenoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0008873.md b/md/UBERON/73/UBERON_0008873.md index 2745485204..ea7a4e3574 100644 --- a/md/UBERON/73/UBERON_0008873.md +++ b/md/UBERON/73/UBERON_0008873.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008873 * *Label* = alveolar pore - * *Definition* = the openings in the alveolar septum that permit air flow between adjacent alveoli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010904] + * *Definition* = the openings in the alveolar septum that permit air flow between adjacent alveoli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010904 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009073.md b/md/UBERON/73/UBERON_0009073.md index 2044559953..57fe60cb72 100644 --- a/md/UBERON/73/UBERON_0009073.md +++ b/md/UBERON/73/UBERON_0009073.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsobronchi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dorsobronchi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009473.md b/md/UBERON/73/UBERON_0009473.md index 454aae83ed..4a0d11e9d0 100644 --- a/md/UBERON/73/UBERON_0009473.md +++ b/md/UBERON/73/UBERON_0009473.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009473 * *Label* = parapodium - * *Definition* = either of a pair of fleshy lateral processes borne by most segments of a polychaete worm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parapodium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672] + * *Definition* = either of a pair of fleshy lateral processes borne by most segments of a polychaete worm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parapodium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672 ] ## Synonyms * paradpod * polychaete paradpodium - * paradpodia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * paradpodia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009573.md b/md/UBERON/73/UBERON_0009573.md index 5ecdff2eb8..384d0d0bae 100644 --- a/md/UBERON/73/UBERON_0009573.md +++ b/md/UBERON/73/UBERON_0009573.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009573 * *Label* = sulcus limitans of fourth ventricle - * *Definition* = In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sulcus_limitans] + * *Definition* = In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sulcus_limitans ] ## Synonyms - * sulcus limitans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78496] - * s. limitans fossae rhomboideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sulcus_limitans[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus limitans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78496 ] + * s. limitans fossae rhomboideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sulcus_limitans, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * BAMS:slm * FMA:78496 * NeuroNames:629 - * UMLS:C0262332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sulcus_Limitans] + * UMLS:C0262332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sulcus_Limitans ] * Wikipedia:Sulcus_limitans * http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png * ncithesaurus:Sulcus_Limitans @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009673.md b/md/UBERON/73/UBERON_0009673.md index e447c87cea..2df0550ce7 100644 --- a/md/UBERON/73/UBERON_0009673.md +++ b/md/UBERON/73/UBERON_0009673.md @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009773.md b/md/UBERON/73/UBERON_0009773.md index c1caed3f29..e898925886 100644 --- a/md/UBERON/73/UBERON_0009773.md +++ b/md/UBERON/73/UBERON_0009773.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009773 * *Label* = renal tubule - * *Definition* = A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061333[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dph[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * *Definition* = A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061333, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dph, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Synonyms - * renal tubule (generic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tubule of excretory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * renal tubule (generic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tubule of excretory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0009973.md b/md/UBERON/73/UBERON_0009973.md index a7176c8350..87a1dfbb94 100644 --- a/md/UBERON/73/UBERON_0009973.md +++ b/md/UBERON/73/UBERON_0009973.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009973 * *Label* = ureterovesical junction - * *Definition* = the valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011488] + * *Definition* = the valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011488 ] ## Synonyms - * vesico-ureteral junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0003020] + * vesico-ureteral junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0003020 ] * vesico-ureteric junction * vesicoureteric junction @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical junction](../../UBERON/51/UBERON_0007651.md) and [connects](../../ts/core#connects.md) some [ureter](../../UBERON/56/UBERON_0000056.md) and [connects](../../ts/core#connects.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0010173.md b/md/UBERON/73/UBERON_0010173.md index b98d4f79b2..842b50a91a 100644 --- a/md/UBERON/73/UBERON_0010173.md +++ b/md/UBERON/73/UBERON_0010173.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010173 * *Label* = sinotubular junction - * *Definition* = the point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011572] + * *Definition* = the point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011572 ] ## Synonyms - * sinotubular ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011572] + * sinotubular ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011572 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0010273.md b/md/UBERON/73/UBERON_0010273.md index a6316c6cce..ff286e66cf 100644 --- a/md/UBERON/73/UBERON_0010273.md +++ b/md/UBERON/73/UBERON_0010273.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010273 * *Label* = zone of hyoid bone - * *Definition* = A zone of bone organ that is part of a hyoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of bone organ that is part of a hyoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hyoid bone zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59494] + * hyoid bone zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59494 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hyoid bone](../../UBERON/85/UBERON_0001685.md) and [zone of bone organ](../../UBERON/13/UBERON_0005913.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0010373.md b/md/UBERON/73/UBERON_0010373.md index ee54234fbe..0100955920 100644 --- a/md/UBERON/73/UBERON_0010373.md +++ b/md/UBERON/73/UBERON_0010373.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010373 * *Label* = uncinate process of pancreas - * *Definition* = In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_pancreas] + * *Definition* = In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_pancreas ] ## Synonyms - * Winslow's pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15857] - * lesser pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15857] - * processus uncinatus (pancreas) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15857] - * processus uncinatus pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uncinate_process_of_pancreas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus uncinatus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uncinate process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17509] + * Winslow's pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15857 ] + * lesser pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15857 ] + * processus uncinatus (pancreas) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15857 ] + * processus uncinatus pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uncinate_process_of_pancreas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus uncinatus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uncinate process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17509 ] ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:18823 * FMA:15857 * SCTID:245383008 - * UMLS:C0227580 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Uncinate_Pancreas] + * UMLS:C0227580 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Uncinate_Pancreas ] * Wikipedia:Uncinate_process_of_pancreas * http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg * ncithesaurus:Uncinate_Pancreas @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0010573.md b/md/UBERON/73/UBERON_0010573.md index e280d380b7..5c8ff42196 100644 --- a/md/UBERON/73/UBERON_0010573.md +++ b/md/UBERON/73/UBERON_0010573.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010573 * *Label* = manual digit 4 metacarpus cartilage element - * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 4 metacarpus cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000532] - * fore limb digit 4 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 4 metacarpus cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000532 ] + * fore limb digit 4 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpus 4 cartilage element - * hand digit 4 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 4 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4 mesenchyme](../../UBERON/94/UBERON_0005694.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011173.md b/md/UBERON/73/UBERON_0011173.md index ef5057ced9..8c71154bb9 100644 --- a/md/UBERON/73/UBERON_0011173.md +++ b/md/UBERON/73/UBERON_0011173.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011173 * *Label* = anterior division of bed nuclei of stria terminalis - * *Definition* = The term anterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753] + * *Definition* = The term anterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753 ] ## Synonyms - * anterior nuclei of stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu] - * bed nuclei of the stria terminalis, anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTa] - * anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000926] - * anterior part of the bed nucleus of the stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] - * bed nuclei of the stria terminalis anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] - * bed nuclei of the stria terminals anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] - * bed nucleus of the stria terminalis anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] - * bed nucleus of the stria terminalis anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] - * bed nucleus of thestria terminalis anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTa] + * anterior nuclei of stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu ] + * bed nuclei of the stria terminalis, anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTa ] + * anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000926 ] + * anterior part of the bed nucleus of the stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] + * bed nuclei of the stria terminalis anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] + * bed nuclei of the stria terminals anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] + * bed nucleus of the stria terminalis anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] + * bed nucleus of the stria terminalis anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] + * bed nucleus of thestria terminalis anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTa ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011273.md b/md/UBERON/73/UBERON_0011273.md index 710d216a04..2a8defb06e 100644 --- a/md/UBERON/73/UBERON_0011273.md +++ b/md/UBERON/73/UBERON_0011273.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011273 * *Label* = nail of manual digit 1 - * *Definition* = A nail that is part of a manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 1 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18734] - * nail of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54329] - * nail plate of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54329] - * thumb nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54329] + * claw of digit 1 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18734 ] + * nail of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54329 ] + * nail plate of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54329 ] + * thumb nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54329 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011673.md b/md/UBERON/73/UBERON_0011673.md index e3dd45d33d..44b2ca50f6 100644 --- a/md/UBERON/73/UBERON_0011673.md +++ b/md/UBERON/73/UBERON_0011673.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011673 * *Label* = plastron scute - * *Definition* = A scute that is part of a plastron. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A scute that is part of a plastron. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [plastron](../../UBERON/76/UBERON_0008276.md) and [scute](../../UBERON/01/UBERON_0008201.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011773.md b/md/UBERON/73/UBERON_0011773.md index 41277b137e..7f878f0d30 100644 --- a/md/UBERON/73/UBERON_0011773.md +++ b/md/UBERON/73/UBERON_0011773.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011773 * *Label* = upper jaw opening - * *Definition* = An anatomical space that is part of a bone of upper jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical space that is part of a bone of upper jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [bone of upper jaw](../../UBERON/97/UBERON_0011597.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011873.md b/md/UBERON/73/UBERON_0011873.md index 641b72f2d8..b5d65ecbfa 100644 --- a/md/UBERON/73/UBERON_0011873.md +++ b/md/UBERON/73/UBERON_0011873.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011873 * *Label* = synarthrosis - * *Definition* = A synarthrosis is a type of joint which permits very little or no movement under normal conditions. Most synarthrosis joints are fibrous. Suture joints and synchondroses are synarthroses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synarthrosis] + * *Definition* = A synarthrosis is a type of joint which permits very little or no movement under normal conditions. Most synarthrosis joints are fibrous. Suture joints and synchondroses are synarthroses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synarthrosis ] ## Synonyms - * synarthrodial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synarthrosis] - * synarthrodial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synarthrosis] - * synarthroses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synarthrosis] + * synarthrodial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synarthrosis ] + * synarthrodial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synarthrosis ] + * synarthroses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synarthrosis ] ## Cross-references - * UMLS:C0699803 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Synarthrosis] + * UMLS:C0699803 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Synarthrosis ] * Wikipedia:Synarthrosis * ncithesaurus:Synarthrosis @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0011973.md b/md/UBERON/73/UBERON_0011973.md index a613555cbf..aa3676270c 100644 --- a/md/UBERON/73/UBERON_0011973.md +++ b/md/UBERON/73/UBERON_0011973.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011973 * *Label* = epiphysis of phalanx of pes - * *Definition* = An epiphysis that is part of a phalanx of a pes [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a phalanx of a pes [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011973 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0012073.md b/md/UBERON/73/UBERON_0012073.md index f97982483e..0278bc3d1f 100644 --- a/md/UBERON/73/UBERON_0012073.md +++ b/md/UBERON/73/UBERON_0012073.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012073 * *Label* = tooth of palatine bone - * *Definition* = A tooth that is attached to a palatine bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A tooth that is attached to a palatine bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * palatine teeth [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * palatine teeth [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * palatine tooth ## Cross-references @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [palatine bone](../../UBERON/82/UBERON_0001682.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Teeth present in some fishes on the palatine bones, bones that lie inside the upper jaw bones (sometimes maxillaries, sometimes premaxillaries) usually behind the vomerine tooth patch. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0012173.md b/md/UBERON/73/UBERON_0012173.md index fa2669c562..4c4d3b2f14 100644 --- a/md/UBERON/73/UBERON_0012173.md +++ b/md/UBERON/73/UBERON_0012173.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012173 * *Label* = middle suprarenal artery - * *Definition* = The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_suprarenal_arteries] + * *Definition* = The middle suprarenal arteries (middle capsular arteries; suprarenal arteries) are two small vessels which arise, one from either side of the abdominal aorta, opposite the superior mesenteric artery. They pass laterally and slightly upward, over the crura of the diaphragm, to the suprarenal glands, where they anastomose with suprarenal branches of the inferior phrenic and renal arteries. In the fetus these arteries are of large size. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_suprarenal_arteries ] ## Synonyms - * middle suprarenal arterial tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14754] - * arteria suprarenalis media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_suprarenal_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * middle capsular artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_suprarenal_arteries] - * middle suprarenal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_suprarenal_arteries] - * middle suprarenal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_suprarenal_arteries] + * middle suprarenal arterial tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14754 ] + * arteria suprarenalis media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_suprarenal_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * middle capsular artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_suprarenal_arteries ] + * middle suprarenal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_suprarenal_arteries ] + * middle suprarenal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_suprarenal_arteries ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0012273.md b/md/UBERON/73/UBERON_0012273.md index dd89ade4cb..be1951e6ed 100644 --- a/md/UBERON/73/UBERON_0012273.md +++ b/md/UBERON/73/UBERON_0012273.md @@ -10,7 +10,7 @@ ## Cross-references - * UMLS:C1882332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Periampullary_Region] + * UMLS:C1882332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Periampullary_Region ] * ncithesaurus:Periampullary_Region ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012273 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0012373.md b/md/UBERON/73/UBERON_0012373.md index 06b5ad5dee..d50a456ef1 100644 --- a/md/UBERON/73/UBERON_0012373.md +++ b/md/UBERON/73/UBERON_0012373.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve plexus](../../UBERON/10/UBERON_0001810.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sympathetic nervous system](../../UBERON/13/UBERON_0000013.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012373 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0012473.md b/md/UBERON/73/UBERON_0012473.md index 2d5c750ad4..c1efaa1f78 100644 --- a/md/UBERON/73/UBERON_0012473.md +++ b/md/UBERON/73/UBERON_0012473.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012473 * *Label* = oral cirrus - * *Definition* = Small tentacle-like structure surrounding the mouth; they act as sensory devices and as a filter for the water passing into the body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lancelet#Physical_features] + * *Definition* = Small tentacle-like structure surrounding the mouth; they act as sensory devices and as a filter for the water passing into the body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lancelet#Physical_features ] ## Synonyms - * buccal cilia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * buccal cirri [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * buccal cilia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * buccal cirri [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * buccal cirrus * buccal tentacle - * oral cilia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * oral cirri [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * oral cilia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * oral cirri [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * oral tentacle * buccal cillium * oral cillium @@ -39,8 +39,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7737 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013073.md b/md/UBERON/73/UBERON_0013073.md index 91eed20e50..5dc604c519 100644 --- a/md/UBERON/73/UBERON_0013073.md +++ b/md/UBERON/73/UBERON_0013073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013073 * *Label* = rattle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rattlesnake#Rattle] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rattlesnake#Rattle ] * *Comment* = The rattle is composed of a series of hollow, interlocked segments made of keratin, which are created by modifying the scales that cover the tip of the tail. ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013073 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013173.md b/md/UBERON/73/UBERON_0013173.md index bb2e8391da..2d2b0e1e34 100644 --- a/md/UBERON/73/UBERON_0013173.md +++ b/md/UBERON/73/UBERON_0013173.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013173 * *Label* = anterior part of tympanic bone - * *Definition* = The anterior aspect of the tympanum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Anterior_Wall_of_the_Tympanum] + * *Definition* = The anterior aspect of the tympanum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Anterior_Wall_of_the_Tympanum ] ## Synonyms - * anterior surface of tympanic plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:56478] + * anterior surface of tympanic plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:56478 ] * anterior wall of tympanic cavity * anterior wall of tympanum @@ -15,7 +15,7 @@ * FMA:56478 * SCTID:368942006 - * UMLS:C1510916 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Wall_of_the_Tympanum] + * UMLS:C1510916 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Wall_of_the_Tympanum ] * ncithesaurus:Anterior_Wall_of_the_Tympanum ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013173 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013473.md b/md/UBERON/73/UBERON_0013473.md index 485114a109..4edf1c93ae 100644 --- a/md/UBERON/73/UBERON_0013473.md +++ b/md/UBERON/73/UBERON_0013473.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013473 * *Label* = lower esophagus - * *Definition* = The lower one third of the esophagus in which the muscle layer is composed of muscle cells predominantly of the smooth type. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Lower_Third_of_the_Esophagus] + * *Definition* = The lower one third of the esophagus in which the muscle layer is composed of muscle cells predominantly of the smooth type. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Lower_Third_of_the_Esophagus ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * SCTID:362129001 - * UMLS:C0227191 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lower_Third_of_the_Esophagus] + * UMLS:C0227191 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lower_Third_of_the_Esophagus ] * ncithesaurus:Lower_Third_of_the_Esophagus ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013573.md b/md/UBERON/73/UBERON_0013573.md index 78a0ce6be6..02ca144d71 100644 --- a/md/UBERON/73/UBERON_0013573.md +++ b/md/UBERON/73/UBERON_0013573.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013573 * *Label* = Brodmann (1909) area 40 - * *Definition* = Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supramarginal_gyrus] + * *Definition* = Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supramarginal_gyrus ] ## Synonyms - * B09-40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1773] - * Brodmann (1909) area 40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1773] - * Brodmann area 40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68637] - * Brodmann area 40, supramarginal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1773] - * Supramarginal area 40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68637] - * area 40 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68637] - * area 40 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1773] - * area supramarginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1773] - * B09-40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1773[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1773 ] + * Brodmann (1909) area 40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1773 ] + * Brodmann area 40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68637 ] + * Brodmann area 40, supramarginal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1773 ] + * Supramarginal area 40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68637 ] + * area 40 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68637 ] + * area 40 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1773 ] + * area supramarginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1773 ] + * B09-40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1773, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * FMA:68637 * NIF_GrossAnatomy:birnlex_1773 * NeuroNames:2408 - * UMLS:C1272501 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1773] + * UMLS:C1272501 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1773 ] * Wikipedia:Supramarginal_gyrus ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013573 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013673.md b/md/UBERON/73/UBERON_0013673.md index 64a4a9a6b3..a016efcd9c 100644 --- a/md/UBERON/73/UBERON_0013673.md +++ b/md/UBERON/73/UBERON_0013673.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013673 * *Label* = os priapium - * *Definition* = Bone of the priapium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium] + * *Definition* = Bone of the priapium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium ] ## Synonyms - * ossa priapium [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ossa priapium [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013673 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0013773.md b/md/UBERON/73/UBERON_0013773.md index f9ee4a8b1a..32bd874f74 100644 --- a/md/UBERON/73/UBERON_0013773.md +++ b/md/UBERON/73/UBERON_0013773.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [body proper](../../UBERON/02/UBERON_0013702.md) and [nipple](../../UBERON/30/UBERON_0002030.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0014473.md b/md/UBERON/73/UBERON_0014473.md index f499883915..ee05185b1e 100644 --- a/md/UBERON/73/UBERON_0014473.md +++ b/md/UBERON/73/UBERON_0014473.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014473 * *Label* = precentral fissure of cerebellum - * *Definition* = Fissure between cerebellar lobules I and II. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081251] + * *Definition* = Fissure between cerebellar lobules I and II. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081251 ] ## Synonyms - * fissura postlingualis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * post-lingual fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83731] - * postlingual fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83731] - * precentral fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081251] + * fissura postlingualis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * post-lingual fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83731 ] + * postlingual fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83731 ] + * precentral fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081251 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014473 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0014773.md b/md/UBERON/73/UBERON_0014773.md index 0267ce22b4..3d08b1191e 100644 --- a/md/UBERON/73/UBERON_0014773.md +++ b/md/UBERON/73/UBERON_0014773.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014773 * *Label* = medial palpebral artery - * *Definition* = The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] + * *Definition* = The medial palpebral arteries (internal palpebral arteries) are arteries of the head. They are two in number, superior and inferior, arise from the ophthalmic, opposite the pulley of the Obliquus superior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] ## Synonyms - * medial palpebral branch of ophthalmic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50012] - * inferior palpebral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] - * internal palpebral arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] - * internal palpebral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] - * superior palpebral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] - * superior palpebral artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_palpebral_arteries] + * medial palpebral branch of ophthalmic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50012 ] + * inferior palpebral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] + * internal palpebral arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] + * internal palpebral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] + * superior palpebral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] + * superior palpebral artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_palpebral_arteries ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014773 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_0014873.md b/md/UBERON/73/UBERON_0014873.md index 75d3d7c9d3..51a6f0fef0 100644 --- a/md/UBERON/73/UBERON_0014873.md +++ b/md/UBERON/73/UBERON_0014873.md @@ -6,10 +6,10 @@ ## Synonyms - * distal end of distal phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33054] - * distal epiphysis of distal phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33054] - * head of distal phalanx of third digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33054] - * head of distal phalanx of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33054] + * distal end of distal phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33054 ] + * distal epiphysis of distal phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33054 ] + * head of distal phalanx of third digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33054 ] + * head of distal phalanx of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33054 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pedal digit 3](../../UBERON/17/UBERON_0004317.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014873 + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000073.md b/md/UBERON/73/UBERON_2000073.md index 50b014a84d..e405be93b5 100644 --- a/md/UBERON/73/UBERON_2000073.md +++ b/md/UBERON/73/UBERON_2000073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000073 * *Label* = somite 5 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 5 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000373.md b/md/UBERON/73/UBERON_2000373.md index 2613cb3e99..f8ca8054c1 100644 --- a/md/UBERON/73/UBERON_2000373.md +++ b/md/UBERON/73/UBERON_2000373.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000373 * *Label* = dorsal fin actinotrichium - * *Definition* = Actinotrichium that is part of the dorsal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the dorsal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin](../../UBERON/97/UBERON_0003097.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000573.md b/md/UBERON/73/UBERON_2000573.md index 545b54b3cf..f757dc0ba7 100644 --- a/md/UBERON/73/UBERON_2000573.md +++ b/md/UBERON/73/UBERON_2000573.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000673.md b/md/UBERON/73/UBERON_2000673.md index cda77ea740..b3a7785915 100644 --- a/md/UBERON/73/UBERON_2000673.md +++ b/md/UBERON/73/UBERON_2000673.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000673 * *Label* = hypobranchial artery - * *Definition* = A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * HA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000673] + * HA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000673 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000773.md b/md/UBERON/73/UBERON_2000773.md index 83019e9ed6..8286613f3b 100644 --- a/md/UBERON/73/UBERON_2000773.md +++ b/md/UBERON/73/UBERON_2000773.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 12 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000773[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 12 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000773, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_2000873.md b/md/UBERON/73/UBERON_2000873.md index 060abf6a50..ffc22fc12f 100644 --- a/md/UBERON/73/UBERON_2000873.md +++ b/md/UBERON/73/UBERON_2000873.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000873 * *Label* = epaxial region somite 4 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2000973.md b/md/UBERON/73/UBERON_2000973.md index 7262c98951..28b0c59533 100644 --- a/md/UBERON/73/UBERON_2000973.md +++ b/md/UBERON/73/UBERON_2000973.md @@ -6,7 +6,7 @@ ## Synonyms - * slow muscle cells somite 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000973[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * slow muscle cells somite 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000973, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_2001073.md b/md/UBERON/73/UBERON_2001073.md index 692e117e91..f938b5e798 100644 --- a/md/UBERON/73/UBERON_2001073.md +++ b/md/UBERON/73/UBERON_2001073.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2001373.md b/md/UBERON/73/UBERON_2001373.md index 20ad8af49c..804d0626b1 100644 --- a/md/UBERON/73/UBERON_2001373.md +++ b/md/UBERON/73/UBERON_2001373.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001373 * *Label* = obsolete migratory slow muscle precursor cell - * *Definition* = Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = likely very zebrafish specific so being obsoleted for now. ## Synonyms - * migratory slow muscle precursor cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001373[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * migratory slow muscle precursor cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001373, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,8 +29,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_2001473.md b/md/UBERON/73/UBERON_2001473.md index 4473ba5e87..6c70fa89f6 100644 --- a/md/UBERON/73/UBERON_2001473.md +++ b/md/UBERON/73/UBERON_2001473.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001473 * *Label* = obsolete deep blastomere - * *Definition* = Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = ZFA:0001473 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_2001773.md b/md/UBERON/73/UBERON_2001773.md index d40343622a..3702caefa5 100644 --- a/md/UBERON/73/UBERON_2001773.md +++ b/md/UBERON/73/UBERON_2001773.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2001873.md b/md/UBERON/73/UBERON_2001873.md index 06e6bd8fed..e42b3a493e 100644 --- a/md/UBERON/73/UBERON_2001873.md +++ b/md/UBERON/73/UBERON_2001873.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001873 * *Label* = head sensory canal system - * *Definition* = Lateral line system on head and pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lateral line system on head and pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * cephalic sensory canal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001873] + * cephalic sensory canal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001873 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2002073.md b/md/UBERON/73/UBERON_2002073.md index 0f627e7025..eeee79d374 100644 --- a/md/UBERON/73/UBERON_2002073.md +++ b/md/UBERON/73/UBERON_2002073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002073 * *Label* = distal cartilage of middle anterior process of basipterygium - * *Definition* = Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2002273.md b/md/UBERON/73/UBERON_2002273.md index f9a2ca78e2..a6ca46dfbe 100644 --- a/md/UBERON/73/UBERON_2002273.md +++ b/md/UBERON/73/UBERON_2002273.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002273 * *Label* = ctenoid scale - * *Definition* = Scale that possesses cteni (discrete spines). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scale that possesses cteni (discrete spines). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2005073.md b/md/UBERON/73/UBERON_2005073.md index aa208b035d..b83f79cb1a 100644 --- a/md/UBERON/73/UBERON_2005073.md +++ b/md/UBERON/73/UBERON_2005073.md @@ -6,7 +6,7 @@ ## Synonyms - * AV ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005073] + * AV ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005073 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2005273.md b/md/UBERON/73/UBERON_2005273.md index aed303f458..8220fc2e7d 100644 --- a/md/UBERON/73/UBERON_2005273.md +++ b/md/UBERON/73/UBERON_2005273.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005273 * *Label* = intestinal mucosal muscle - * *Definition* = A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-090217-11] + * *Definition* = A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-090217-11 ] ## Synonyms - * intestinal lamina muscularis mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] + * intestinal lamina muscularis mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2005373.md b/md/UBERON/73/UBERON_2005373.md index 425b890fa8..a54ee162fa 100644 --- a/md/UBERON/73/UBERON_2005373.md +++ b/md/UBERON/73/UBERON_2005373.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005373 * *Label* = dorsal fin distal radial bone 2 - * *Definition* = dorsal fin distal radial 2 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 2 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 2](../../UBERON/73/UBERON_2105373.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2105373.md b/md/UBERON/73/UBERON_2105373.md index b772e390ba..f1ea35a898 100644 --- a/md/UBERON/73/UBERON_2105373.md +++ b/md/UBERON/73/UBERON_2105373.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 2](../../UBERON/65/UBERON_2005365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_2205373.md b/md/UBERON/73/UBERON_2205373.md index d16d042121..a378527222 100644 --- a/md/UBERON/73/UBERON_2205373.md +++ b/md/UBERON/73/UBERON_2205373.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205373 * *Label* = dorsal fin distal radial cartilage 2 - * *Definition* = dorsal fin distal radial 2 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 2 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 2](../../UBERON/73/UBERON_2105373.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3000473.md b/md/UBERON/73/UBERON_3000473.md index 282f6690d5..88875b23cc 100644 --- a/md/UBERON/73/UBERON_3000473.md +++ b/md/UBERON/73/UBERON_3000473.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_3000673.md b/md/UBERON/73/UBERON_3000673.md index 0c4d1754ee..58fad47d39 100644 --- a/md/UBERON/73/UBERON_3000673.md +++ b/md/UBERON/73/UBERON_3000673.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000673 * *Label* = posteromedial process - * *Definition* = Cartilaginous, paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes invest the laryngeal apparatus and are ossified in the adult. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Cartilaginous, paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes invest the laryngeal apparatus and are ossified in the adult. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * cornua posteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000673] - * hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000673] + * cornua posteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000673 ] + * hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000673 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3000773.md b/md/UBERON/73/UBERON_3000773.md index 8a2ce8f68b..4135122683 100644 --- a/md/UBERON/73/UBERON_3000773.md +++ b/md/UBERON/73/UBERON_3000773.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000773 * *Label* = ilial ridge - * *Definition* = Longitudinal crest on the dorsal side of the shaft of the ilium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Longitudinal crest on the dorsal side of the shaft of the ilium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * ala ossis ilei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000773] + * ala ossis ilei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000773 ] ## Cross-references @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3000873.md b/md/UBERON/73/UBERON_3000873.md index 458438bcb9..c53c49aeb4 100644 --- a/md/UBERON/73/UBERON_3000873.md +++ b/md/UBERON/73/UBERON_3000873.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000873 * *Label* = pars cylindriformis ilei - * *Definition* = Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3010073.md b/md/UBERON/73/UBERON_3010073.md index c67ad3b90e..0b05e4363f 100644 --- a/md/UBERON/73/UBERON_3010073.md +++ b/md/UBERON/73/UBERON_3010073.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010073 * *Label* = centrale 2 - * *Definition* = The proximal-most rectangular cartilage or bone when two centralelia are present. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = The proximal-most rectangular cartilage or bone when two centralelia are present. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3010173.md b/md/UBERON/73/UBERON_3010173.md index 9fd72f87c8..c899edc7c6 100644 --- a/md/UBERON/73/UBERON_3010173.md +++ b/md/UBERON/73/UBERON_3010173.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_3010273.md b/md/UBERON/73/UBERON_3010273.md index 27f21a789f..fb278ccc53 100644 --- a/md/UBERON/73/UBERON_3010273.md +++ b/md/UBERON/73/UBERON_3010273.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010273 * *Label* = obsolete cell space - * *Definition* = Anatomical space that is part of a cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Anatomical space that is part of a cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms ## Cross-references - * CARO:0000062 [[rdf-schema#label](../../el/rdf-schema#label.md) = + cell space] + * CARO:0000062 [ [rdf-schema#label](../../el/rdf-schema#label.md) = cell space ] ## Subsets @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/73/UBERON_3010673.md b/md/UBERON/73/UBERON_3010673.md index 3fc577d31e..26195e9556 100644 --- a/md/UBERON/73/UBERON_3010673.md +++ b/md/UBERON/73/UBERON_3010673.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010673 * *Label* = m. rhomboideus anterior - * *Definition* = Muscle which originates on the posterior surface of the frontoparietal and the anterior part of the dorsal fascia. Inserts on the ventral surface of the anteromedial corner of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates on the posterior surface of the frontoparietal and the anterior part of the dorsal fascia. Inserts on the ventral surface of the anteromedial corner of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_4000173.md b/md/UBERON/73/UBERON_4000173.md index 327f87dccc..4f6c741374 100644 --- a/md/UBERON/73/UBERON_4000173.md +++ b/md/UBERON/73/UBERON_4000173.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000173 * *Label* = pelvic fin lepidotrichium - * *Definition* = Lepidotrichium that is part of the pelvic fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Lepidotrichium that is part of the pelvic fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * pelvic fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000173[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * pelvic fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000173] + * pelvic fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000173, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * pelvic fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000173 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/73/UBERON_4200173.md b/md/UBERON/73/UBERON_4200173.md index 95c20c5acb..d874e04113 100644 --- a/md/UBERON/73/UBERON_4200173.md +++ b/md/UBERON/73/UBERON_4200173.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0000074.md b/md/UBERON/74/UBERON_0000074.md index 9802f7d6ee..2ead1db3d3 100644 --- a/md/UBERON/74/UBERON_0000074.md +++ b/md/UBERON/74/UBERON_0000074.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000074 * *Label* = renal glomerulus - * *Definition* = A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005325[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerulus] + * *Definition* = A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005325, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerulus ] * *Comment* = ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule? ## Synonyms - * renal glomeruli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001288] + * renal glomeruli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001288 ] * glomerulus - * glomerular capillary tuft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001288] - * glomerular tuft [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * glomerulus renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerulus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * malphigian glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000530] - * renal corpuscle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * glomerular capillary tuft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001288 ] + * glomerular tuft [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * glomerulus renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerulus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * malphigian glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000530 ] + * renal corpuscle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A05.810.453.736.520 * SCTID:362217000 * TAO:0001288 - * UMLS:C0022663 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glomerulus] + * UMLS:C0022663 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glomerulus ] * Wikipedia:Glomerulus * ZFA:0001288 * http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg @@ -59,8 +59,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Melissa Haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-06-18T09:26:37Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0000174.md b/md/UBERON/74/UBERON_0000174.md index 157954632d..b207d2b5cf 100644 --- a/md/UBERON/74/UBERON_0000174.md +++ b/md/UBERON/74/UBERON_0000174.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000174 * *Label* = excreta - * *Definition* = Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000022] + * *Definition* = Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000022 ] ## Synonyms * excreted substance - * waste substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000184] - * excretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000491] + * waste substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000184 ] + * excretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000491 ] ## Cross-references @@ -38,8 +38,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000324 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007550 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0000474.md b/md/UBERON/74/UBERON_0000474.md index d47ee92d89..91ddd88c16 100644 --- a/md/UBERON/74/UBERON_0000474.md +++ b/md/UBERON/74/UBERON_0000474.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000474 * *Label* = female reproductive system - * *Definition* = The organs of the female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Female_genitalia] + * *Definition* = The organs of the female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Female_genitalia ] ## Synonyms - * female organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * genitalia of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * female organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * genitalia of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * female genital system * female genitalia - * female reproductive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000381] - * gynaecological tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000083] - * systema genitale femininum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000083] + * female reproductive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000381 ] + * gynaecological tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000083 ] + * systema genitale femininum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000083 ] ## Cross-references @@ -36,7 +36,7 @@ * OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA * SCTID:361386004 * TGMA:0000635 - * UMLS:C0700038 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Female_Reproductive_System] + * UMLS:C0700038 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Female_Reproductive_System ] * VHOG:0000726 * WBbt:0006748 * Wikipedia:Female_genitalia @@ -58,7 +58,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [reproductive system](../../UBERON/90/UBERON_0000990.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0000974.md b/md/UBERON/74/UBERON_0000974.md index d322960f26..07a8b2973e 100644 --- a/md/UBERON/74/UBERON_0000974.md +++ b/md/UBERON/74/UBERON_0000974.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000974 * *Label* = neck - * *Definition* = Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck] + * *Definition* = Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck ] * *Comment* = Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck. ## Synonyms - * collum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neck[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7155] + * collum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neck, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7155 ] ## Cross-references @@ -26,7 +26,7 @@ * MIAA:0000297 * OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA * SCTID:302550007 - * UMLS:C0027530 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neck] + * UMLS:C0027530 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neck ] * Wikipedia:Neck * galen:Neck * http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg @@ -55,8 +55,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cervical * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_32443 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001074.md b/md/UBERON/74/UBERON_0001074.md index cc6494184f..96b29d5c54 100644 --- a/md/UBERON/74/UBERON_0001074.md +++ b/md/UBERON/74/UBERON_0001074.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001074 * *Label* = pericardial cavity - * *Definition* = Cavity of serous sac surrounded by serous pericardium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_cavity] + * *Definition* = Cavity of serous sac surrounded by serous pericardium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_cavity ] ## Synonyms * cavity of pericardial sac - * pericardial space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_cavity] - * cavitas pericardiaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pericardial space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_cavity ] + * cavitas pericardiaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0000053 * SCTID:362027001 * TAO:0002220 - * UMLS:C0225972 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pericardial_Cavity] + * UMLS:C0225972 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pericardial_Cavity ] * VHOG:0000556 * Wikipedia:Pericardial_cavity * ZFA:0001655 @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pericardial sac](../../UBERON/06/UBERON_0002406.md) and [surrounded_by](../../RO/19/RO_0002219.md) some [serous pericardium](../../UBERON/57/UBERON_0002357.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart (of other tetrapods) is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes). Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7718 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001174.md b/md/UBERON/74/UBERON_0001174.md index 08f5452c9d..a9b48367e7 100644 --- a/md/UBERON/74/UBERON_0001174.md +++ b/md/UBERON/74/UBERON_0001174.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001174 * *Label* = common bile duct - * *Definition* = a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_bile_duct] + * *Definition* = a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_bile_duct ] ## Synonyms * ductus choledochus (biliaris) - * ductus choledochus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_bile_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus choledochus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_bile_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A03.159.183.079.300 * SCTID:362199009 * TAO:0005165 - * UMLS:C0009437 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Bile_Duct] + * UMLS:C0009437 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Bile_Duct ] * VHOG:0000214 * Wikipedia:Common_bile_duct * ZFA:0005165 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The duct formed by the union of the common hepatic and cystic ducts. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001274.md b/md/UBERON/74/UBERON_0001274.md index 95ca2c0e8c..241308fd54 100644 --- a/md/UBERON/74/UBERON_0001274.md +++ b/md/UBERON/74/UBERON_0001274.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001274 * *Label* = ischium - * *Definition* = Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischium] + * *Definition* = Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischium ] * *Comment* = Note that this is_a hip bone in MA; in FMA it is a zone of bone organ. ## Synonyms - * os ischii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000860] - * os ischii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ischium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os ischii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000860 ] + * os ischii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ischium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A02.835.232.611.548 * OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA * SCTID:182025004 - * UMLS:C0022122 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ischium] + * UMLS:C0022122 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ischium ] * VSAO:0005006 * Wikipedia:Ischium * galen:Ischium @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [ischial endochondral element](../../UBERON/56/UBERON_0015056.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ischial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001374.md b/md/UBERON/74/UBERON_0001374.md index 3381abadbe..2b235b59ee 100644 --- a/md/UBERON/74/UBERON_0001374.md +++ b/md/UBERON/74/UBERON_0001374.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001374 * *Label* = biceps femoris - * *Definition* = The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_femoris_muscle] + * *Definition* = The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_femoris_muscle ] ## Synonyms - * biceps femoris muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003418] - * musculus biceps femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biceps_femoris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * biceps femoris muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003418 ] + * musculus biceps femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biceps_femoris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:22356 * MA:0002270 * SCTID:181672002 - * UMLS:C0224449 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Biceps_Femoris] + * UMLS:C0224449 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Biceps_Femoris ] * Wikipedia:Biceps_femoris_muscle * galen:BicepsFemoris * http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001474.md b/md/UBERON/74/UBERON_0001474.md index 124f4c984e..edfb9166c1 100644 --- a/md/UBERON/74/UBERON_0001474.md +++ b/md/UBERON/74/UBERON_0001474.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001474 * *Label* = bone element - * *Definition* = Skeletal element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000057[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000057, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Alternate definition: Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA] ## Synonyms - * bone element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000057] - * bone organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5018] - * bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000082[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000140[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001459[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001190] + * bone element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000057 ] + * bone organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5018 ] + * bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000082, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000140, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001459, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001190 ] ## Cross-references @@ -33,7 +33,7 @@ * OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA * SCTID:90780006 * TAO:0001514 - * UMLS:C0262950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone] + * UMLS:C0262950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone ] * VHOG:0001190 * VSAO:0000057 * Wikipedia:Bone @@ -59,7 +59,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [skeletal element](../../UBERON/65/UBERON_0004765.md) ## Other Logical Axioms @@ -72,8 +72,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The 'new animal phylogeny' reveals that many of the groups known to biomineralize sit among close relatives that do not, and it favours an interpretation of convergent or parallel evolution for biomineralization in animals. (...) Whether this 'biomineralization toolkit'of genes reflects a parallel co-option of a common suite of genes or the inheritance of a skeletogenic gene regulatory network from a biomineralizing common ancestor remains an open debate.[debated][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001574.md b/md/UBERON/74/UBERON_0001574.md index 99e68bbe9f..14e579517d 100644 --- a/md/UBERON/74/UBERON_0001574.md +++ b/md/UBERON/74/UBERON_0001574.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001574 * *Label* = palatoglossus muscle - * *Definition* = The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus lingu. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoglossus_muscle] + * *Definition* = The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus lingu. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoglossus_muscle ] ## Synonyms * palatoglossal * palatoglossal muscle * palatoglossus - * musculus palatoglossus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatoglossus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus palatoglossus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatoglossus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:46697 * MA:0002351 * SCTID:244783001 - * UMLS:C1704249 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palatoglossus_Muscle] + * UMLS:C1704249 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palatoglossus_Muscle ] * Wikipedia:Palatoglossus_muscle * http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001674.md b/md/UBERON/74/UBERON_0001674.md index 24ea60e2f2..1ba2cfcbac 100644 --- a/md/UBERON/74/UBERON_0001674.md +++ b/md/UBERON/74/UBERON_0001674.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001674 * *Label* = masseteric vein - * *Definition* = A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/masseteric-veins.html] + * *Definition* = A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/masseteric-veins.html ] ## Synonyms - * masseteric veins [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * masseteric veins [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:52519 * MA:0002167 - * UMLS:C0925179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Masseteric_Vein] + * UMLS:C0925179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Masseteric_Vein ] * ncithesaurus:Masseteric_Vein ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [masseter muscle](../../UBERON/97/UBERON_0001597.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001774.md b/md/UBERON/74/UBERON_0001774.md index d76b145674..62c6d27759 100644 --- a/md/UBERON/74/UBERON_0001774.md +++ b/md/UBERON/74/UBERON_0001774.md @@ -8,12 +8,12 @@ ## Synonyms - * body musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000473] - * muscle organ of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * body musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000473 ] + * muscle organ of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trunk muscle - * trunk muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * trunk muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trunk musculature ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001874.md b/md/UBERON/74/UBERON_0001874.md index 264acbe37c..c2f0885b96 100644 --- a/md/UBERON/74/UBERON_0001874.md +++ b/md/UBERON/74/UBERON_0001874.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001874 * *Label* = putamen - * *Definition* = Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_809] + * *Definition* = Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_809 ] * *Comment* = CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM) ## Synonyms @@ -23,9 +23,9 @@ * MA:0000895 * MESH:A08.186.211.730.885.105.487.550.784 * NIF_GrossAnatomy:birnlex_809 - * NeuroNames:230 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_809] + * NeuroNames:230 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_809 ] * SCTID:281512002 - * UMLS:C0034169 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Putamen] + * UMLS:C0034169 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Putamen ] * VHOG:0001456 * Wikipedia:Putamen * http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease[Wikipedia:Putamen]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = All nuclei of the mammalian basal ganglia are also present in the oldest vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0001974.md b/md/UBERON/74/UBERON_0001974.md index 9b7c9eb36f..e4264c3395 100644 --- a/md/UBERON/74/UBERON_0001974.md +++ b/md/UBERON/74/UBERON_0001974.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001974 * *Label* = lamina propria of esophagus - * *Definition* = A lamina propria that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * esophagus lamina propria - * esophagus lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * esophagus lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * esophagus lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * lamina propria mucosae of esophagus - * lamina propria mucosae of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosae of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus lamina propria mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lamina propria mucosae of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosae of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus lamina propria mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * oesophagus lamina propria ## Cross-references @@ -32,7 +32,7 @@ * EMAPA:27003 * FMA:63050 * MA:0001568 - * UMLS:C1707949 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Lamina_Propria] + * UMLS:C1707949 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Lamina_Propria ] * ncithesaurus:Esophageal_Lamina_Propria ## Subsets @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002074.md b/md/UBERON/74/UBERON_0002074.md index c281a5d194..718a134e84 100644 --- a/md/UBERON/74/UBERON_0002074.md +++ b/md/UBERON/74/UBERON_0002074.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002074 * *Label* = hair shaft - * *Definition* = The non-growing portion of a hair which protrudes from the skin, i.e., from the follicle[BTO]. the cuticle, and/or cortex and/or medulla of a hair[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004672[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003809] + * *Definition* = The non-growing portion of a hair which protrudes from the skin, i.e., from the follicle[BTO]. the cuticle, and/or cortex and/or medulla of a hair[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004672, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003809 ] * *Comment* = TODO - add distinct subclasses for coat hair vs vibrissa hair ## Synonyms * shaft of hair - * scapus pili [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004672] + * scapus pili [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004672 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:70728 * MA:0000159 * SCTID:361359004 - * UMLS:C0221961 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Shaft_of_the_Hair] + * UMLS:C0221961 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Shaft_of_the_Hair ] * ncithesaurus:Shaft_of_the_Hair ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002174.md b/md/UBERON/74/UBERON_0002174.md index 8980318c51..4acd32c66d 100644 --- a/md/UBERON/74/UBERON_0002174.md +++ b/md/UBERON/74/UBERON_0002174.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002174 * *Label* = middle lobe of right lung - * *Definition* = In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_lobe_of_right_lung] + * *Definition* = In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_lobe_of_right_lung ] * *Comment* = Called 'middle lobe of lung' in FMA ## Synonyms * intermediate lobe of right lung - * lobus medius pulmonis dextri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7383[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus medius pulmonis dextri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7383, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * right lung middle lobe * right lung, middle lobe * right medial lobe of lung * right middle lobe of lung - * middle lobe of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7383] + * middle lobe of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7383 ] * right medial lobe * right middle lobe @@ -24,7 +24,7 @@ * FMA:7383 * MA:0000430 * SCTID:361973004 - * UMLS:C0225757 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Lobe_of_the_Right_Lung] + * UMLS:C0225757 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Lobe_of_the_Right_Lung ] * Wikipedia:Middle_lobe_of_right_lung * galen:MiddleLobeOfRightLung * http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle lobe of lung](../../UBERON/55/UBERON_0008955.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002274.md b/md/UBERON/74/UBERON_0002274.md index 94d08a3c89..5a669f44b4 100644 --- a/md/UBERON/74/UBERON_0002274.md +++ b/md/UBERON/74/UBERON_0002274.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002374.md b/md/UBERON/74/UBERON_0002374.md index eb19a4e9d6..245167ccfe 100644 --- a/md/UBERON/74/UBERON_0002374.md +++ b/md/UBERON/74/UBERON_0002374.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002374 * *Label* = metacarpal bone - * *Definition* = A bone that is part of the metacarpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metacarpal_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the metacarpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metacarpal_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -17,7 +17,7 @@ * OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA * SCTID:181977005 * SCTID:425761003 - * UMLS:C0025526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpal_Bone] + * UMLS:C0025526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpal_Bone ] * Wikipedia:Metacarpal_bone * galen:Metacarpal * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpus region](../../UBERON/53/UBERON_0004453.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002474.md b/md/UBERON/74/UBERON_0002474.md index 491a785e6b..8963b94bf1 100644 --- a/md/UBERON/74/UBERON_0002474.md +++ b/md/UBERON/74/UBERON_0002474.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002474 * *Label* = cerebellar peduncular complex - * *Definition* = A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_970] + * *Definition* = A composite structure of the brain stem, which is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF, based on NN]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_970 ] * *Comment* = todo - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter. ## Synonyms * cerebellar peduncles - * cerebellar peduncles and decussations [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_970] + * cerebellar peduncles and decussations [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_970 ] * cerebellar peduncles set * cerebellum peduncles - * pedunculi cerebellares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77791[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basal ganglia (anatomic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224] - * corpus striatum (Savel'ev) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglia basales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of cerebellar peduncles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77791] + * pedunculi cerebellares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77791, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basal ganglia (anatomic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224 ] + * corpus striatum (Savel'ev) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglia basales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of cerebellar peduncles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77791 ] ## Cross-references * BAMS:cbp * FMA:77791 * NIF_GrossAnatomy:birnlex_970 - * NeuroNames:224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_970] - * UMLS:C0228514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_970] - * UMLS:C0228515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebellar_Peduncle] + * NeuroNames:224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_970 ] + * UMLS:C0228514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_970 ] + * UMLS:C0228515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebellar_Peduncle ] * Wikipedia:Cerebellar_peduncle * ncithesaurus:Cerebellar_Peduncle @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002574.md b/md/UBERON/74/UBERON_0002574.md index 7740d7a1ce..e9f47c5836 100644 --- a/md/UBERON/74/UBERON_0002574.md +++ b/md/UBERON/74/UBERON_0002574.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002574 * *Label* = regional part of inferior olivary complex - * *Definition* = A regional part of brain that is part of a inferior olivary complex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a inferior olivary complex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inferior olivary complex segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71259] - * segment of inferior olivary complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1052] + * inferior olivary complex segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71259 ] + * segment of inferior olivary complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1052 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002774.md b/md/UBERON/74/UBERON_0002774.md index 3911f6660d..e47df2c5a9 100644 --- a/md/UBERON/74/UBERON_0002774.md +++ b/md/UBERON/74/UBERON_0002774.md @@ -6,18 +6,18 @@ ## Synonyms - * posterior transverse convolution of heschl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1661] + * posterior transverse convolution of heschl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1661 ] * posterior transverse temporal convolution of heschl - * gyrus temporalis transversus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:135[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus temporalis transversus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:135, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PTTG * FMA:61910 * NIF_GrossAnatomy:birnlex_1661 - * NeuroNames:135 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1661] + * NeuroNames:135 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1661 ] * SCTID:279193008 - * UMLS:C0262320 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1661] + * UMLS:C0262320 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1661 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002874.md b/md/UBERON/74/UBERON_0002874.md index 066e004515..31b9c5176d 100644 --- a/md/UBERON/74/UBERON_0002874.md +++ b/md/UBERON/74/UBERON_0002874.md @@ -6,16 +6,16 @@ ## Synonyms - * LPCu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2647[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus pericuneatus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:769[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * LPCu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2647, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus pericuneatus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:769, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:LPCu * FMA:72604 * NIF_GrossAnatomy:birnlex_2647 - * NeuroNames:769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2647] - * UMLS:C0262271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2647] + * NeuroNames:769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2647 ] + * UMLS:C0262271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2647 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0002974.md b/md/UBERON/74/UBERON_0002974.md index bb4729b3e6..b419a78481 100644 --- a/md/UBERON/74/UBERON_0002974.md +++ b/md/UBERON/74/UBERON_0002974.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002974 * *Label* = molecular layer of cerebellar cortex - * *Definition* = The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021679] + * *Definition* = The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021679 ] * *Comment* = Taxon notes: Compare with ZFA:0000636 - cerebellar crest, which is also composed of parallel fibers but located in a more restricted nucleus within the cerebellum ## Synonyms - * cerebellar molecular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021679] + * cerebellar molecular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021679 ] * cerebellum molecular cell layer * cerebellum molecular layer - * fasciculi thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:366[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thalamic fiber tracts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:366] + * fasciculi thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:366, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thalamic fiber tracts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:366 ] ## Cross-references @@ -21,11 +21,11 @@ * FMA:83897 * MA:0000996 * NIF_GrossAnatomy:birnlex_810 - * NeuroNames:366 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_810] + * NeuroNames:366 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_810 ] * SCTID:369045002 - * UMLS:C0228469 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_810] - * UMLS:C1289474 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_810] - * UMLS:C1709064 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Molecular_Layer_of_the_Cerebellum] + * UMLS:C0228469 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_810 ] + * UMLS:C1289474 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_810 ] + * UMLS:C1709064 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Molecular_Layer_of_the_Cerebellum ] * ncithesaurus:Molecular_Layer_of_the_Cerebellum ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003074.md b/md/UBERON/74/UBERON_0003074.md index 9ebb49ee24..cb87fca704 100644 --- a/md/UBERON/74/UBERON_0003074.md +++ b/md/UBERON/74/UBERON_0003074.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003074 * *Label* = mesonephric duct - * *Definition* = Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephric_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephric_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts. ## Synonyms - * Wolffian duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:yaf[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wolffian_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000546] - * Leydig's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wolffian_duct] - * archinephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000082[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wolffian_duct] - * ductus mesonephricus; ductus Wolffi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephric_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Wolffian duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:yaf, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wolffian_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000546 ] + * Leydig's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wolffian_duct ] + * archinephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000082, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wolffian_duct ] + * ductus mesonephricus; ductus Wolffi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephric_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * renal duct ## Cross-references @@ -24,7 +24,7 @@ * MESH:A16.254.940 * SCTID:308800003 * TAO:0000546 - * UMLS:C0043204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesonephric_Duct] + * UMLS:C0043204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesonephric_Duct ] * VHOG:0000082 * Wikipedia:Mesonephric_duct * XAO:0000242 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003174.md b/md/UBERON/74/UBERON_0003174.md index 5989fcf328..3182bf7ebd 100644 --- a/md/UBERON/74/UBERON_0003174.md +++ b/md/UBERON/74/UBERON_0003174.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004570 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000367 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003174 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_0003274.md b/md/UBERON/74/UBERON_0003274.md index f82016212d..37a8ceb85d 100644 --- a/md/UBERON/74/UBERON_0003274.md +++ b/md/UBERON/74/UBERON_0003274.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003274 * *Label* = mesothelium of omental bursa - * *Definition* = A mesothelium that is part of a lesser sac [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a lesser sac [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lesser sac mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004557] - * omental bursa mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * omental bursa mehomhelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000441] + * lesser sac mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004557 ] + * omental bursa mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * omental bursa mehomhelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000441 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lesser sac](../../UBERON/41/UBERON_0001341.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003374.md b/md/UBERON/74/UBERON_0003374.md index 09665b349c..edadaa84ee 100644 --- a/md/UBERON/74/UBERON_0003374.md +++ b/md/UBERON/74/UBERON_0003374.md @@ -6,9 +6,9 @@ ## Synonyms - * chorion ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorion ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * chorion epithelium - * chorionic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0005145] + * chorionic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0005145 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [extraembryonic structure](../../UBERON/78/UBERON_0000478.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chorion](../../UBERON/24/UBERON_0003124.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003474.md b/md/UBERON/74/UBERON_0003474.md index 6561c78951..0a01a99b20 100644 --- a/md/UBERON/74/UBERON_0003474.md +++ b/md/UBERON/74/UBERON_0003474.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003474 * *Label* = meningeal artery - * *Definition* = One of the arteries supplying the meninix[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meningeal_arteries] + * *Definition* = One of the arteries supplying the meninix[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meningeal_arteries ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [meninx](../../UBERON/60/UBERON_0002360.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003574.md b/md/UBERON/74/UBERON_0003574.md index 610eb6d2bf..a86e7a8d8d 100644 --- a/md/UBERON/74/UBERON_0003574.md +++ b/md/UBERON/74/UBERON_0003574.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003574 * *Label* = elbow connective tissue - * *Definition* = A portion of connective tissue that is part of a elbow [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a elbow [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cubital region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cubital region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cubital region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elbow portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * elbow textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cubital region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cubital region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cubital region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elbow portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * elbow textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [elbow](../../UBERON/61/UBERON_0001461.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003674.md b/md/UBERON/74/UBERON_0003674.md index e0cda21c89..e7958dc9dc 100644 --- a/md/UBERON/74/UBERON_0003674.md +++ b/md/UBERON/74/UBERON_0003674.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003674 * *Label* = cuspid - * *Definition* = In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] + * *Definition* = In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] ## Synonyms - * canine tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55636] - * cuspis dentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55636[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canine tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55636 ] + * cuspis dentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55636, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * canine - * canine %28tooth%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * canine eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * canine teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1262[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * canine teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * dens caninus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * dentes canini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dogtooth %28anatomy%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * eye teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * eye tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * eyeteeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * eyetooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] - * fang [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canine_tooth] + * canine %28tooth%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * canine eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * canine teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1262, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * canine teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * dens caninus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * dentes canini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dogtooth %28anatomy%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * eye teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * eye tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * eyeteeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * eyetooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] + * fang [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canine_tooth ] ## Cross-references @@ -29,7 +29,7 @@ * GAID:1262 * MESH:A14.254.860.200 * SCTID:88719004 - * UMLS:C0010482 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Canine_Tooth] + * UMLS:C0010482 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Canine_Tooth ] * Wikipedia:Canine_tooth * http://upload.wikimedia.org/wikipedia/commons/5/57/Azawakh_K9.jpg * ncithesaurus:Canine_Tooth @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0003874.md b/md/UBERON/74/UBERON_0003874.md index 504586b36f..5b00ab05c5 100644 --- a/md/UBERON/74/UBERON_0003874.md +++ b/md/UBERON/74/UBERON_0003874.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003874 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_0003974.md b/md/UBERON/74/UBERON_0003974.md index 5b0da44340..1ad01d0cf4 100644 --- a/md/UBERON/74/UBERON_0003974.md +++ b/md/UBERON/74/UBERON_0003974.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003974 * *Label* = cranial vagina - * *Definition* = the upper third of the vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009077] + * *Definition* = the upper third of the vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009077 ] * *Comment* = Editor notes: relationship to caudal Mullerian duct? ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004074.md b/md/UBERON/74/UBERON_0004074.md index afd6ce58c1..fd1df42362 100644 --- a/md/UBERON/74/UBERON_0004074.md +++ b/md/UBERON/74/UBERON_0004074.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004074 * *Label* = cerebellum vermis lobule I - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009988] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009988 ] * *Comment* = TODO FMA:61904 lingual gyrus FMA:71032 lingula gyrus (lg) ## Synonyms - * lingula (I) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:LING] + * lingula (I) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:LING ] * lingula of anterior cerebellum vermis * lingula of cerebellum * lobule I of cerebellum vermis * neuraxis lingula - * vermic lobule I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081224] - * Lingula (I) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LING] - * Lingula (l) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LING] - * lingula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000998] + * vermic lobule I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081224 ] + * Lingula (I) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LING ] + * Lingula (l) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LING ] + * lingula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000998 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004174.md b/md/UBERON/74/UBERON_0004174.md index 3c234ed709..d06442c7d8 100644 --- a/md/UBERON/74/UBERON_0004174.md +++ b/md/UBERON/74/UBERON_0004174.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004174 * *Label* = leg joint - * *Definition* = Joint in the leg. For example the knee, which separates the leg tibia and femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035111] + * *Definition* = Joint in the leg. For example the knee, which separates the leg tibia and femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035111 ] * *Comment* = Originally created for consistenct with GO, obsoleted when the GO class was obsoleted as the meaning was unclear ## Synonyms - * joint of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * joint of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0003657 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004174 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_0004274.md b/md/UBERON/74/UBERON_0004274.md index 0f6c29a761..eebc3c9123 100644 --- a/md/UBERON/74/UBERON_0004274.md +++ b/md/UBERON/74/UBERON_0004274.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004274 * *Label* = lateral ventricle choroid plexus epithelium - * *Definition* = A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus epithelium that is part of a lateral ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chorioid plexus of cerebral hemisphere epithelium of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelial tissue of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelium of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of choroid plexus of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of choroid plexus of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle chorioid plexus of cerebral hemisphere epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle choroid plexus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle epithelial tissue of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle epithelium of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lateral ventricle epithelium of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chorioid plexus of cerebral hemisphere epithelium of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelial tissue of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelium of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of choroid plexus of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of choroid plexus of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle chorioid plexus of cerebral hemisphere epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle choroid plexus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle epithelial tissue of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle epithelium of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lateral ventricle epithelium of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * EHDAA2:0004450 * FMA:242815 * MA:0000962 - * UMLS:C1711323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle] + * UMLS:C1711323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle ] * ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle ## Subsets @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [choroid plexus of lateral ventricle](../../UBERON/07/UBERON_0002307.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004374.md b/md/UBERON/74/UBERON_0004374.md index 96c0ebfb29..5e6910b798 100644 --- a/md/UBERON/74/UBERON_0004374.md +++ b/md/UBERON/74/UBERON_0004374.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004374 * *Label* = vitelline vasculature - * *Definition* = vasculature of the yolk sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001719] + * *Definition* = vasculature of the yolk sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001719 ] ## Synonyms - * omphalomesenteric system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * vitelline bloos vessel system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * vitelline system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * omphalomesenteric system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * vitelline bloos vessel system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * vitelline system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -20,19 +20,20 @@ ## Superclasses * [vasculature](../../UBERON/49/UBERON_0002049.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [yolk sac](../../UBERON/40/UBERON_0001040.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004474.md b/md/UBERON/74/UBERON_0004474.md index 8d259e1ab1..a39e5cd832 100644 --- a/md/UBERON/74/UBERON_0004474.md +++ b/md/UBERON/74/UBERON_0004474.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004474 * *Label* = musculature of arm - * *Definition* = Any collection of muscles that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000141] - * arm musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202] - * muscle group of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202] - * set of muscles of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202] + * arm muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000141 ] + * arm musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202 ] + * muscle group of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202 ] + * set of muscles of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004674.md b/md/UBERON/74/UBERON_0004674.md index 1ecd3bf351..4d7367fd78 100644 --- a/md/UBERON/74/UBERON_0004674.md +++ b/md/UBERON/74/UBERON_0004674.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004674 * *Label* = facial nerve root - * *Definition* = A nerve root that continuous_with a facial nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve root that continuous_with a facial nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * central part of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53418] - * facial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53418] - * facial nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1513] - * facial neural root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53418] - * root of facial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53418] - * facial nerve or its root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:7n] - * facial nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:7n] + * central part of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53418 ] + * facial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53418 ] + * facial nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1513 ] + * facial neural root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53418 ] + * root of facial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53418 ] + * facial nerve or its root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:7n ] + * facial nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:7n ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [facial nerve](../../UBERON/47/UBERON_0001647.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004774.md b/md/UBERON/74/UBERON_0004774.md index 2f0016b580..82f4f518ba 100644 --- a/md/UBERON/74/UBERON_0004774.md +++ b/md/UBERON/74/UBERON_0004774.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004774 * *Label* = inferior eyelid tarsus - * *Definition* = An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An eyelid tarsus that is part of a lower eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inferior tarsal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59088] - * inferior tarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59088] + * inferior tarsal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59088 ] + * inferior tarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59088 ] * inferior tarsus of eyelid - * tarsal plate of lower eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59088] - * tarsus inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59088[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tarsal plate of lower eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59088 ] + * tarsus inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59088, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * tarsus of lower eyelid ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [eyelid tarsus](../../UBERON/72/UBERON_0004772.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower eyelid](../../UBERON/13/UBERON_0001713.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0004874.md b/md/UBERON/74/UBERON_0004874.md index a1a9cb2e88..4d41556308 100644 --- a/md/UBERON/74/UBERON_0004874.md +++ b/md/UBERON/74/UBERON_0004874.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004874 * *Label* = somatopleure - * *Definition* = a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Somatopleure] + * *Definition* = a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Somatopleure ] * *Comment* = AO notes: sources differ as to whether this is part-of or develops-from the LPM. Development notes: Gives rise to the paired appendages in jawed vertebrates. a persistent somatopleure through the redistribution and expansion of the lateral plate mesoderm is a synapomorphy for gnathostomes and a critical step in generating a novel developmental module with dramatic evolutionary potentia (Tulenko et al. 2012) http://burkelab.research.wesleyan.edu/current-projects/lamprey/ ## Synonyms @@ -14,7 +14,7 @@ * EHDAA2:0001847 * EHDAA:381 * EMAPA:16180 - * UMLS:C1519423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Somatopleure] + * UMLS:C1519423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Somatopleure ] * VHOG:0000557 * Wikipedia:Somatopleure * http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png @@ -28,7 +28,7 @@ * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) * [part_of](../../BFO/50/BFO_0000050.md) some [lateral plate mesoderm](../../UBERON/81/UBERON_0003081.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) ## Equivalencies @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005074.md b/md/UBERON/74/UBERON_0005074.md index 531723542a..dba9e6c292 100644 --- a/md/UBERON/74/UBERON_0005074.md +++ b/md/UBERON/74/UBERON_0005074.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005174.md b/md/UBERON/74/UBERON_0005174.md index b2a2a59417..a87dad8ce0 100644 --- a/md/UBERON/74/UBERON_0005174.md +++ b/md/UBERON/74/UBERON_0005174.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005174 * *Label* = dorsal region organ - * *Definition* = An organ that part of the dorsum of the organism. In vertebrates this includes the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that part of the dorsum of the organism. In vertebrates this includes the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * back organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001901] + * back organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001901 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsum](../../UBERON/37/UBERON_0001137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005274.md b/md/UBERON/74/UBERON_0005274.md index 39328645ac..eb38ab1ff3 100644 --- a/md/UBERON/74/UBERON_0005274.md +++ b/md/UBERON/74/UBERON_0005274.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005374.md b/md/UBERON/74/UBERON_0005374.md index b4aedca221..88e179bbb4 100644 --- a/md/UBERON/74/UBERON_0005374.md +++ b/md/UBERON/74/UBERON_0005374.md @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005474.md b/md/UBERON/74/UBERON_0005474.md index 42be0bb68c..d9779b5610 100644 --- a/md/UBERON/74/UBERON_0005474.md +++ b/md/UBERON/74/UBERON_0005474.md @@ -7,7 +7,7 @@ ## Synonyms - * polocytus secundarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18651] + * polocytus secundarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18651 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0001820 * *[consider](../../er/oboInOwl#consider.md)* = FMA:18651 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005474 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_0005574.md b/md/UBERON/74/UBERON_0005574.md index ef7393e5c7..7b44e1a77c 100644 --- a/md/UBERON/74/UBERON_0005574.md +++ b/md/UBERON/74/UBERON_0005574.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005574 * *Label* = rhombomere 3 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000994] + * lateral wall rhombomere 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000994 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 3](../../UBERON/07/UBERON_0005507.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005674.md b/md/UBERON/74/UBERON_0005674.md index aa32bbcba4..cbabad065f 100644 --- a/md/UBERON/74/UBERON_0005674.md +++ b/md/UBERON/74/UBERON_0005674.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005674 * *Label* = right lung cranial lobe endothelium - * *Definition* = An endothelium that is part of a upper lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a upper lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005874.md b/md/UBERON/74/UBERON_0005874.md index 8e3bbfde37..b7f4074a76 100644 --- a/md/UBERON/74/UBERON_0005874.md +++ b/md/UBERON/74/UBERON_0005874.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005874 * *Label* = 3rd arch pharyngeal cleft - * *Definition* = A groove that is situated between the 3rd and 4th pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:OG] + * *Definition* = A groove that is situated between the 3rd and 4th pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:OG ] ## Synonyms - * 3rd arch branchial groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000071] - * 3rd arch groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000074] - * 3rd pharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000973] - * 3rd pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000572] - * branchial groove of 3rd arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16581] - * 3rd pharyngeal cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000973] + * 3rd arch branchial groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000071 ] + * 3rd arch groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000074 ] + * 3rd pharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000973 ] + * 3rd pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000572 ] + * branchial groove of 3rd arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16581 ] + * 3rd pharyngeal cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000973 ] ## Cross-references @@ -29,12 +29,12 @@ ## Superclasses * [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) and [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0005974.md b/md/UBERON/74/UBERON_0005974.md index 9618a39dbd..52b5676c86 100644 --- a/md/UBERON/74/UBERON_0005974.md +++ b/md/UBERON/74/UBERON_0005974.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005974 * *Label* = posterior cerebellomedullary cistern - * *Definition* = A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009036[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cisterna_magna] + * *Definition* = A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009036, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cisterna_magna ] ## Synonyms - * cisterna cerebellomedullaris posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009033] - * cisterna magna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009033] - * cisterna cerebellomedullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cisterna_magna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cisterna cerebellomedullaris posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009033 ] + * cisterna magna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009033 ] + * cisterna cerebellomedullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cisterna_magna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A08.186.566.166.686.351 * NeuroNames:542 * SCTID:280391002 - * UMLS:C0008841 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cisterna_Magna] + * UMLS:C0008841 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cisterna_Magna ] * Wikipedia:Cisterna_magna * http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png * ncithesaurus:Cisterna_Magna @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006074.md b/md/UBERON/74/UBERON_0006074.md index ad03856677..2334eebe4d 100644 --- a/md/UBERON/74/UBERON_0006074.md +++ b/md/UBERON/74/UBERON_0006074.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006074 * *Label* = lumbar region of vertebral column - * *Definition* = Subdivision of vertebral column that corresponds to the lumbar subdivision of the body, containing the lumbar vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = Subdivision of vertebral column that corresponds to the lumbar subdivision of the body, containing the lumbar vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] ## Synonyms - * lumbar skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001037] - * lumbar spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004147] - * lumbar vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16203] + * lumbar skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001037 ] + * lumbar spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004147 ] + * lumbar vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16203 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [lower back](../../UBERON/62/UBERON_0005462.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006174.md b/md/UBERON/74/UBERON_0006174.md index 15360d976f..47bdd70e48 100644 --- a/md/UBERON/74/UBERON_0006174.md +++ b/md/UBERON/74/UBERON_0006174.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006174 * *Label* = pronephric sinus - * *Definition* = The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039012] + * *Definition* = The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039012 ] * *Comment* = todo - check relationship to renal sinus, improve definition ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [renal sinus](../../UBERON/71/UBERON_0006171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006274.md b/md/UBERON/74/UBERON_0006274.md index 46591a37b8..5b625ee37c 100644 --- a/md/UBERON/74/UBERON_0006274.md +++ b/md/UBERON/74/UBERON_0006274.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006374.md b/md/UBERON/74/UBERON_0006374.md index d5181e10df..e6c889a13f 100644 --- a/md/UBERON/74/UBERON_0006374.md +++ b/md/UBERON/74/UBERON_0006374.md @@ -6,8 +6,8 @@ ## Synonyms - * part of afferent arteriole forming juxtaglomerular complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002580] - * renin-producing cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002580] + * part of afferent arteriole forming juxtaglomerular complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002580 ] + * renin-producing cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002580 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006474.md b/md/UBERON/74/UBERON_0006474.md index 223551cc20..6a937df99a 100644 --- a/md/UBERON/74/UBERON_0006474.md +++ b/md/UBERON/74/UBERON_0006474.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006474 * *Label* = Brodmann (1909) area 30 - * *Definition* = Brodmann area 30, also known as agranular retrolimbic area 30, is a subdivision of the cytoarchitecturally defined retrosplenial region of the cerebral cortex. In the human it is located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the granular retrolimbic area 29, dorsally by the ventral posterior cingulate area 23 and ventrolaterally by the ectorhinal area 36 (Brodmann-1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_30] + * *Definition* = Brodmann area 30, also known as agranular retrolimbic area 30, is a subdivision of the cytoarchitecturally defined retrosplenial region of the cerebral cortex. In the human it is located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the granular retrolimbic area 29, dorsally by the ventral posterior cingulate area 23 and ventrolaterally by the ectorhinal area 36 (Brodmann-1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_30 ] ## Synonyms - * B09-30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1764] - * BA30 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1764] - * Brodmann area 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68627] - * Brodmann area 30, agranular retrolimbic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1764] - * Brodmann's area 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68627] - * agranular retrolimbic area 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68627] - * area 30 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68627] - * area 30 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1764] - * area retrolimbica agranularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1764] - * area retrosplenialis agranularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_30[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * B09-30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1764[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1764 ] + * BA30 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1764 ] + * Brodmann area 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68627 ] + * Brodmann area 30, agranular retrolimbic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1764 ] + * Brodmann's area 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68627 ] + * agranular retrolimbic area 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68627 ] + * area 30 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68627 ] + * area 30 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1764 ] + * area retrolimbica agranularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1764 ] + * area retrosplenialis agranularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_30, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * B09-30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1764, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:birnlex_1764 * NeuroNames:2424 * SCTID:384784007 - * UMLS:C1272491 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1764] + * UMLS:C1272491 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1764 ] * Wikipedia:Brodmann_area_30 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006574.md b/md/UBERON/74/UBERON_0006574.md index d4b0231587..d58c33496a 100644 --- a/md/UBERON/74/UBERON_0006574.md +++ b/md/UBERON/74/UBERON_0006574.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006574 * *Label* = pectinate line - * *Definition* = The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line: [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectinate_line] + * *Definition* = The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line: [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectinate_line ] * *Comment* = FMA also has FMA:29321 but it's not clear how this differs ## Synonyms - * pectinate line of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75383] - * Hilton's 'white line' [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19159] - * dentate line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectinate_line] - * linea anocutanea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectinate_line[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recto-anal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectinate_line] - * site of anal membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:19159] + * pectinate line of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75383 ] + * Hilton's 'white line' [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19159 ] + * dentate line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectinate_line ] + * linea anocutanea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectinate_line, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recto-anal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectinate_line ] + * site of anal membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:19159 ] ## Cross-references * EMAPA:19159 * FMA:75383 * SCTID:245445008 - * UMLS:C0821671 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pectinate_Line] + * UMLS:C0821671 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pectinate_Line ] * Wikipedia:Pectinate_line * http://upload.wikimedia.org/wikipedia/commons/7/7b/Hemorrhoid.png * ncithesaurus:Pectinate_Line @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) and [adjacent to](../../RO/20/RO_0002220.md) some [proctodeum](../../UBERON/31/UBERON_0000931.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006674.md b/md/UBERON/74/UBERON_0006674.md index b6f2a217a9..19b07d881c 100644 --- a/md/UBERON/74/UBERON_0006674.md +++ b/md/UBERON/74/UBERON_0006674.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006674 * *Label* = inguinal ring - * *Definition* = An entrance or exit of the inguinal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inguinal_rings] + * *Definition* = An entrance or exit of the inguinal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inguinal_rings ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0006974.md b/md/UBERON/74/UBERON_0006974.md index e9063d4772..57266ace2b 100644 --- a/md/UBERON/74/UBERON_0006974.md +++ b/md/UBERON/74/UBERON_0006974.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006974 * *Label* = metanephridium - * *Definition* = a type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephridium#Metanephridia] + * *Definition* = a type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephridium#Metanephridia ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0007174.md b/md/UBERON/74/UBERON_0007174.md index 3d70862500..fccfa35672 100644 --- a/md/UBERON/74/UBERON_0007174.md +++ b/md/UBERON/74/UBERON_0007174.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007174 * *Label* = medial border of scapula - * *Definition* = The medial border of the scapula (vertebral border, medial margin) is the longest of the three borders, and extends from the medial to the inferior angle. It is arched, intermediate in thickness between the superior and the axillary borders, and the portion of it above the spine forms an obtuse angle with the part below. This border presents an anterior and a posterior lip, and an intermediate narrow area. The anterior lip affords attachment to the Serratus anterior; the posterior lip, to the Supraspinatus above the spine, the Infraspinatus below; the area between the two lips, to the Levator scapulC& above the triangular surface at the commencement of the spine, to the Rhomboideus minor on the edge of that surface, and to the Rhomboideus major below it; this last is attached by means of a fibrous arch, connected above to the lower part of the triangular surface at the base of the spine, and below to the lower part of the border. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_border_of_scapula] + * *Definition* = The medial border of the scapula (vertebral border, medial margin) is the longest of the three borders, and extends from the medial to the inferior angle. It is arched, intermediate in thickness between the superior and the axillary borders, and the portion of it above the spine forms an obtuse angle with the part below. This border presents an anterior and a posterior lip, and an intermediate narrow area. The anterior lip affords attachment to the Serratus anterior; the posterior lip, to the Supraspinatus above the spine, the Infraspinatus below; the area between the two lips, to the Levator scapulC& above the triangular surface at the commencement of the spine, to the Rhomboideus minor on the edge of that surface, and to the Rhomboideus major below it; this last is attached by means of a fibrous arch, connected above to the lower part of the triangular surface at the base of the spine, and below to the lower part of the border. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_border_of_scapula ] * *Comment* = Consider merging with UBERON:1500000 scapular blade, depending on https://github.com/obophenotype/uberon/issues/339. See also PMID:20136669 ## Synonyms - * margo medialis (scapula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23242] - * margo medialis scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23242[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial part of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23242] - * vertebral border of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23242] - * medial border of the scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_border_of_scapula] - * medial margin of the scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_border_of_scapula] - * vertebral border [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_border_of_scapula] - * vertebral border of the scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_border_of_scapula] + * margo medialis (scapula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23242 ] + * margo medialis scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23242, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial part of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23242 ] + * vertebral border of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23242 ] + * medial border of the scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_border_of_scapula ] + * medial margin of the scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_border_of_scapula ] + * vertebral border [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_border_of_scapula ] + * vertebral border of the scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_border_of_scapula ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0007274.md b/md/UBERON/74/UBERON_0007274.md index f07534dcdf..8e48d89ee5 100644 --- a/md/UBERON/74/UBERON_0007274.md +++ b/md/UBERON/74/UBERON_0007274.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007274 * *Label* = crista of ampulla of anterior semicircular duct of membranous laybrinth - * *Definition* = A crista ampullaris neuroepithelium that is part of a anterior semicircular duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A crista ampullaris neuroepithelium that is part of a anterior semicircular duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - unvetted ## Synonyms - * anterior crista ampullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000619] - * anterior cristae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000619[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * anterior semicircular canal sensory patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000619] - * anterior semicircular canal sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000619[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * rostral crista [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000619] - * AC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000619] - * anterior crista [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000619] - * sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000619] + * anterior crista ampullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000619 ] + * anterior cristae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000619, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * anterior semicircular canal sensory patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000619 ] + * anterior semicircular canal sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000619, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * rostral crista [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000619 ] + * AC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000619 ] + * anterior crista [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000619 ] + * sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000619 ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crista ampullaris neuroepithelium](../../UBERON/35/UBERON_0006935.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior semicircular duct](../../UBERON/57/UBERON_0001857.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0007374.md b/md/UBERON/74/UBERON_0007374.md index 3899171700..034cf60543 100644 --- a/md/UBERON/74/UBERON_0007374.md +++ b/md/UBERON/74/UBERON_0007374.md @@ -17,23 +17,23 @@ ## Superclasses * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) - * [cartilage element](../../UBERON/44/UBERON_0007844.md) - * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) + * [pharyngeal arch cartilage](../../UBERON/04/UBERON_0011004.md) * [incus endochondral element](../../UBERON/17/UBERON_0015017.md) * [develops from](../../RO/02/RO_0002202.md) some [incus pre-cartilage condensation](../../UBERON/48/UBERON_0006248.md) * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [incus endochondral element](../../UBERON/17/UBERON_0015017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0007574.md b/md/UBERON/74/UBERON_0007574.md index f8eb124a0d..c3fcd63e02 100644 --- a/md/UBERON/74/UBERON_0007574.md +++ b/md/UBERON/74/UBERON_0007574.md @@ -6,8 +6,8 @@ ## Synonyms - * apical epidermal caps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005148[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * apical epithelial cap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastema] + * apical epidermal caps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005148, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * apical epithelial cap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastema ] ## Cross-references @@ -32,8 +32,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the regeneration epithelium closest to the fin.[TAO] * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8293 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0007774.md b/md/UBERON/74/UBERON_0007774.md index 91690c09ec..1ef417dc11 100644 --- a/md/UBERON/74/UBERON_0007774.md +++ b/md/UBERON/74/UBERON_0007774.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007774 * *Label* = secondary dentition - * *Definition* = The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.237] + * *Definition* = The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.237 ] ## Synonyms - * dentes permanentes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75152[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * permanent dentition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1251] - * permanent teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75152] - * set of permanent teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75152] - * set of secondary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75152] - * adult dentition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1251] - * secondary dentition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1251] + * dentes permanentes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75152, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * permanent dentition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1251 ] + * permanent teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75152 ] + * set of permanent teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75152 ] + * set of secondary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75152 ] + * adult dentition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1251 ] + * secondary dentition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1251 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dentition](../../UBERON/72/UBERON_0003672.md) and [developmentally replaces](../../RO/85/RO_0002285.md) some [primary dentition](../../UBERON/16/UBERON_0007116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0008274.md b/md/UBERON/74/UBERON_0008274.md index 39e8722561..c082d47ee8 100644 --- a/md/UBERON/74/UBERON_0008274.md +++ b/md/UBERON/74/UBERON_0008274.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008274 * *Label* = mollusc venom - * *Definition* = Venoms from mollusks, including the Conus and Octopus species. The venoms contain proteins, enzymes, choline derivatives, slow-reacting substances, and several characterized polypeptide toxins that affect the nervous system. Mollusk venoms include cephalotoxin, venerup in, maculotoxin, surugatoxin, conotoxins, and murexine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] + * *Definition* = Venoms from mollusks, including the Conus and Octopus species. The venoms contain proteins, enzymes, choline derivatives, slow-reacting substances, and several characterized polypeptide toxins that affect the nervous system. Mollusk venoms include cephalotoxin, venerup in, maculotoxin, surugatoxin, conotoxins, and murexine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] ## Synonyms - * conus venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] - * mollusc venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] - * mollusk venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] - * octopus venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] - * snail venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.590] + * conus venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] + * mollusc venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] + * mollusk venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] + * octopus venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] + * snail venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.590 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0008574.md b/md/UBERON/74/UBERON_0008574.md index f499cf1bbb..c52ecf7496 100644 --- a/md/UBERON/74/UBERON_0008574.md +++ b/md/UBERON/74/UBERON_0008574.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008574 * *Label* = transverse arytenoid - * *Definition* = The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arytenoid_muscle] + * *Definition* = The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arytenoid_muscle ] ## Synonyms * arytenoid transversus - * tranverse arytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_arytenoid] + * tranverse arytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_arytenoid ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0008874.md b/md/UBERON/74/UBERON_0008874.md index cb4252a683..4bc8de2334 100644 --- a/md/UBERON/74/UBERON_0008874.md +++ b/md/UBERON/74/UBERON_0008874.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008874 * *Label* = pulmonary acinus - * *Definition* = the part of the airway consisting of a respiratory bronchiole and all of its branches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010911[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acinus#The_Lungs] + * *Definition* = the part of the airway consisting of a respiratory bronchiole and all of its branches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010911, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acinus#The_Lungs ] ## Synonyms - * primary pulmonary lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7313] + * primary pulmonary lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7313 ] * respiratory lobule ## Cross-references * FMA:7313 * SCTID:361365004 - * UMLS:C0225696 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pulmonary_Acinus] + * UMLS:C0225696 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pulmonary_Acinus ] * Wikipedia:Acinus#The_Lungs * ncithesaurus:Pulmonary_Acinus @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0008974.md b/md/UBERON/74/UBERON_0008974.md index 434e55798c..522fe3e0c7 100644 --- a/md/UBERON/74/UBERON_0008974.md +++ b/md/UBERON/74/UBERON_0008974.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008974 * *Label* = apocrine gland - * *Definition* = A gland whose discharged secretion contains part of the secreting cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001162[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apocrine] + * *Definition* = A gland whose discharged secretion contains part of the secreting cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001162, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apocrine ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = apocrine - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0009074.md b/md/UBERON/74/UBERON_0009074.md index aab8a021ea..73f4582e7e 100644 --- a/md/UBERON/74/UBERON_0009074.md +++ b/md/UBERON/74/UBERON_0009074.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009074 * *Label* = syrinx organ - * *Definition* = vocal organ of birds, located at the base of a trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Syrinx_(bird_anatomy)] + * *Definition* = vocal organ of birds, located at the base of a trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Syrinx_(bird_anatomy) ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0009474.md b/md/UBERON/74/UBERON_0009474.md index bdafd6dfb0..a27446a837 100644 --- a/md/UBERON/74/UBERON_0009474.md +++ b/md/UBERON/74/UBERON_0009474.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0009674.md b/md/UBERON/74/UBERON_0009674.md index 158226d76d..34adfe50ea 100644 --- a/md/UBERON/74/UBERON_0009674.md +++ b/md/UBERON/74/UBERON_0009674.md @@ -33,8 +33,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Cranial nerves XI and XII evolved in the common ancestor to amniotes (non-amphibian tetrapods) thus totalling twelve pairs.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0009774.md b/md/UBERON/74/UBERON_0009774.md index 7aea822aa1..cdd95577ff 100644 --- a/md/UBERON/74/UBERON_0009774.md +++ b/md/UBERON/74/UBERON_0009774.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0009974.md b/md/UBERON/74/UBERON_0009974.md index eaccf67c34..059d3c8849 100644 --- a/md/UBERON/74/UBERON_0009974.md +++ b/md/UBERON/74/UBERON_0009974.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009974 * *Label* = lumen of Rathke's pouch - * *Definition* = An anatomical cavity that surrounded_by a Rathke's pouch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that surrounded_by a Rathke's pouch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Rathkes pouch invagination [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004138] + * Rathkes pouch invagination [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004138 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [Rathke's pouch](../../UBERON/56/UBERON_0005356.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0010074.md b/md/UBERON/74/UBERON_0010074.md index 447b87c12f..df71197759 100644 --- a/md/UBERON/74/UBERON_0010074.md +++ b/md/UBERON/74/UBERON_0010074.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010074 * *Label* = chromaffin system - * *Definition* = The cells of the body which stain with chromium salts. They occur along the sympathetic nerves, in the adrenal gland, and in various other organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224] + * *Definition* = The cells of the body which stain with chromium salts. They occur along the sympathetic nerves, in the adrenal gland, and in various other organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224 ] * *Comment* = Taxon notes: in adult cylostomes and teleosts, the interrenal bodies are separate from chromaffin bodies ## Synonyms - * argentaffin system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224] + * argentaffin system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224 ] * chromaffin tissue ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0010174.md b/md/UBERON/74/UBERON_0010174.md index ad8fb9b153..53a124d990 100644 --- a/md/UBERON/74/UBERON_0010174.md +++ b/md/UBERON/74/UBERON_0010174.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010174 * *Label* = Schweigger-Seidel sheath - * *Definition* = a phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMC:PMC3204613[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Schweigger-Seidel_sheath] + * *Definition* = a phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMC:PMC3204613, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Schweigger-Seidel_sheath ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0010574.md b/md/UBERON/74/UBERON_0010574.md index 5f65da3a06..9a96b21dd5 100644 --- a/md/UBERON/74/UBERON_0010574.md +++ b/md/UBERON/74/UBERON_0010574.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010574 * *Label* = manual digit 5 metacarpus cartilage element - * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * finger 5 metacarpus cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000538] - * fore limb digit 5 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * finger 5 metacarpus cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000538 ] + * fore limb digit 5 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpus 5 cartilage element - * hand digit 5 metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 5 metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [manual digit metacarpus cartilage element](../../UBERON/99/UBERON_0010699.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5 mesenchyme](../../UBERON/95/UBERON_0005695.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0010974.md b/md/UBERON/74/UBERON_0010974.md index 96e80c1f64..7798dc78e3 100644 --- a/md/UBERON/74/UBERON_0010974.md +++ b/md/UBERON/74/UBERON_0010974.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011274.md b/md/UBERON/74/UBERON_0011274.md index b948c75dce..a033f23051 100644 --- a/md/UBERON/74/UBERON_0011274.md +++ b/md/UBERON/74/UBERON_0011274.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011274 * *Label* = nail of manual digit 2 - * *Definition* = A nail that is part of a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 2 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18735] - * index finger nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54332] - * nail of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54332] - * nail of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54332] - * nail plate of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54332] + * claw of digit 2 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18735 ] + * index finger nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54332 ] + * nail of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54332 ] + * nail of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54332 ] + * nail plate of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54332 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011374.md b/md/UBERON/74/UBERON_0011374.md index 5d069486a7..29fbe7cdda 100644 --- a/md/UBERON/74/UBERON_0011374.md +++ b/md/UBERON/74/UBERON_0011374.md @@ -31,8 +31,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = preputial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011574.md b/md/UBERON/74/UBERON_0011574.md index cf20efef43..0a90cd6c36 100644 --- a/md/UBERON/74/UBERON_0011574.md +++ b/md/UBERON/74/UBERON_0011574.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011574 * *Label* = mesonephric duct lumen - * *Definition* = A tube lumen that is part of a mesonephric duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tube lumen that is part of a mesonephric duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nephric duct lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001244] + * nephric duct lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001244 ] * cavity of nephric duct ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephric duct](../../UBERON/74/UBERON_0003074.md) and [tube lumen](../../UBERON/82/UBERON_0005082.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011574 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011674.md b/md/UBERON/74/UBERON_0011674.md index 9831d6aeb7..ff490dcb4a 100644 --- a/md/UBERON/74/UBERON_0011674.md +++ b/md/UBERON/74/UBERON_0011674.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011674 * *Label* = carapace scute - * *Definition* = A scute that is part of a carapace. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A scute that is part of a carapace. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [carapace](../../UBERON/75/UBERON_0008275.md) and [scute](../../UBERON/01/UBERON_0008201.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011774.md b/md/UBERON/74/UBERON_0011774.md index 27befc9dc1..0071731795 100644 --- a/md/UBERON/74/UBERON_0011774.md +++ b/md/UBERON/74/UBERON_0011774.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011774 * *Label* = utriculosaccular duct - * *Definition* = A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/utriculosaccular%20duct] + * *Definition* = A duct connecting the the utricle to the saccule in the membranous labyrinth of the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/utriculosaccular%20duct ] * *Comment* = Alternate: leads from the utricle of the internal ear to the endolymphatic duct. - http://medical-dictionary.thefreedictionary.com/utriculosaccular+duct. We assume a 3-way connection ## Synonyms - * Bttcher's canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org] - * ductus utricosaccularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61243] + * Bttcher's canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org ] + * ductus utricosaccularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61243 ] * utricosaccular duct - * utricosaccular duct of membranous labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61243] + * utricosaccular duct of membranous labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61243 ] * utriculo-saccular duct ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [endolymphatic duct](../../UBERON/60/UBERON_0001860.md) and [connects](../../ts/core#connects.md) some [saccule of membranous labyrinth](../../UBERON/54/UBERON_0001854.md) and [connects](../../ts/core#connects.md) some [utricle of membranous labyrinth](../../UBERON/53/UBERON_0001853.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011874.md b/md/UBERON/74/UBERON_0011874.md index 4107fc31be..a786b36609 100644 --- a/md/UBERON/74/UBERON_0011874.md +++ b/md/UBERON/74/UBERON_0011874.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011874 * *Label* = amphiarthrosis - * *Definition* = Amphiarthrosis is a type of continuous, slightly movable joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amphiarthrosis] + * *Definition* = Amphiarthrosis is a type of continuous, slightly movable joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amphiarthrosis ] ## Synonyms - * amphiarthrodial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amphiarthrosis] - * amphiarthroses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amphiarthrosis] + * amphiarthrodial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amphiarthrosis ] + * amphiarthroses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amphiarthrosis ] ## Cross-references * FMA:76693 - * UMLS:C0224520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Amphiarthrosis] + * UMLS:C0224520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Amphiarthrosis ] * Wikipedia:Amphiarthrosis * ncithesaurus:Amphiarthrosis @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0011974.md b/md/UBERON/74/UBERON_0011974.md index eb870a3a28..3bacb951e7 100644 --- a/md/UBERON/74/UBERON_0011974.md +++ b/md/UBERON/74/UBERON_0011974.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011974 * *Label* = epiphysis of proximal phalanx of pes - * *Definition* = An epiphysis that is part of a proximal phalanx of pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a proximal phalanx of pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of pes](../../UBERON/68/UBERON_0003868.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011974 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0012074.md b/md/UBERON/74/UBERON_0012074.md index f1e5e70ed2..17a22e851f 100644 --- a/md/UBERON/74/UBERON_0012074.md +++ b/md/UBERON/74/UBERON_0012074.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012074 * *Label* = bony part of hard palate - * *Definition* = A subdivision of skeletal system that subdivision_of a hard palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of skeletal system that subdivision_of a hard palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bony palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59857] - * palatum osseum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * bony palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59857 ] + * palatum osseum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeletal system](../../UBERON/75/UBERON_0000075.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0012174.md b/md/UBERON/74/UBERON_0012174.md index f074073f5e..106712cd61 100644 --- a/md/UBERON/74/UBERON_0012174.md +++ b/md/UBERON/74/UBERON_0012174.md @@ -30,9 +30,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001926 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001927 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012174 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_0012274.md b/md/UBERON/74/UBERON_0012274.md index bd086bca4b..45a9694e32 100644 --- a/md/UBERON/74/UBERON_0012274.md +++ b/md/UBERON/74/UBERON_0012274.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012274 * *Label* = columnar epithelium - * *Definition* = An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Columnar_epithelium] + * *Definition* = An epithelium that consists of columnar epithelial cells. Columnar epithelia are epithelial cells whose heights are at least four times their width. Columnar epithelia are divided into simple (or unilayered), and the rarer stratified (or multi-layered).[WP, modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Columnar_epithelium ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012274 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0012374.md b/md/UBERON/74/UBERON_0012374.md index 3892117a11..cce8bd3cda 100644 --- a/md/UBERON/74/UBERON_0012374.md +++ b/md/UBERON/74/UBERON_0012374.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012374 * *Label* = subserosal plexus - * *Definition* = The subserous part of the enteric plexus of autonomic nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/subserous+plexus] + * *Definition* = The subserous part of the enteric plexus of autonomic nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/subserous+plexus ] ## Synonyms - * subserous nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77598] - * subserous plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77598] + * subserous nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77598 ] + * subserous plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77598 ] * tela subserosa ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0012474.md b/md/UBERON/74/UBERON_0012474.md index 44c15ca3fb..27d72bf996 100644 --- a/md/UBERON/74/UBERON_0012474.md +++ b/md/UBERON/74/UBERON_0012474.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012474 * *Label* = hepatic cecum - * *Definition* = A ventral evagination extending anteriorly in the mid-portion of the intestine in Amphioxi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002855] + * *Definition* = A ventral evagination extending anteriorly in the mid-portion of the intestine in Amphioxi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002855 ] * *Comment* = Homology notes: may be analagous to liver, Romer says not homologous ## Synonyms - * hepatic caecum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002855] + * hepatic caecum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002855 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7737 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0013074.md b/md/UBERON/74/UBERON_0013074.md index 07062ceb48..359e41d491 100644 --- a/md/UBERON/74/UBERON_0013074.md +++ b/md/UBERON/74/UBERON_0013074.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013074 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0013174.md b/md/UBERON/74/UBERON_0013174.md index d974e7c71b..26649a487b 100644 --- a/md/UBERON/74/UBERON_0013174.md +++ b/md/UBERON/74/UBERON_0013174.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013174 * *Label* = sigmoid process of tympanic bone - * *Definition* = a wavy crest externally on the tympanic bone of cetaceans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryS.html] + * *Definition* = a wavy crest externally on the tympanic bone of cetaceans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryS.html ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013174 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0013474.md b/md/UBERON/74/UBERON_0013474.md index 17b3d09200..7dc428579e 100644 --- a/md/UBERON/74/UBERON_0013474.md +++ b/md/UBERON/74/UBERON_0013474.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013474 * *Label* = middle part of esophagus - * *Definition* = The middle one third of the esophagus in which the muscle layer is composed of muscle cells of the striated and smooth types. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Middle_Third_of_the_Esophagus] + * *Definition* = The middle one third of the esophagus in which the muscle layer is composed of muscle cells of the striated and smooth types. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Middle_Third_of_the_Esophagus ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * SCTID:276802008 - * UMLS:C0227189 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Third_of_the_Esophagus] + * UMLS:C0227189 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Third_of_the_Esophagus ] * ncithesaurus:Middle_Third_of_the_Esophagus ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0013674.md b/md/UBERON/74/UBERON_0013674.md index 43242853e7..87d8f19dfe 100644 --- a/md/UBERON/74/UBERON_0013674.md +++ b/md/UBERON/74/UBERON_0013674.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013674 * *Label* = ctenactinium - * *Definition* = A curved rod-like clasper on the posterior side of the priapium in Phallostethidae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/3786/ctenactinium] + * *Definition* = A curved rod-like clasper on the posterior side of the priapium in Phallostethidae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/3786/ctenactinium ] ## Synonyms - * ctenactinia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ctenactinia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0013774.md b/md/UBERON/74/UBERON_0013774.md index f810a38113..13bbf9262a 100644 --- a/md/UBERON/74/UBERON_0013774.md +++ b/md/UBERON/74/UBERON_0013774.md @@ -7,9 +7,9 @@ ## Synonyms * diaphysis of metatarsal - * metatarsal bone diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33826] + * metatarsal bone diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33826 ] * metatarsal diaphysis - * shaft of metatarsal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33826] + * shaft of metatarsal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33826 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013774 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0014374.md b/md/UBERON/74/UBERON_0014374.md index 2854f904a1..615f45dd28 100644 --- a/md/UBERON/74/UBERON_0014374.md +++ b/md/UBERON/74/UBERON_0014374.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014374 * *Label* = embryoid body - * *Definition* = Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0004988] + * *Definition* = Embryoid bodies (EBs) are three-dimensional aggregates of pluripotent stem cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0004988 ] * *Comment* = In future this class may be ceded to another ontology if it falls outside the scope of in-vivo, non-pathological biology ## Synonyms - * embryonic body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Embryoid_body] + * embryonic body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Embryoid_body ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors[BTO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014374 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0014474.md b/md/UBERON/74/UBERON_0014474.md index 13ca41e39b..9dcc047e4b 100644 --- a/md/UBERON/74/UBERON_0014474.md +++ b/md/UBERON/74/UBERON_0014474.md @@ -6,9 +6,9 @@ ## Synonyms - * fissura postcentralis cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * post-central fissure of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83732] - * postcentral fissure-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83732] + * fissura postcentralis cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * post-central fissure of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83732 ] + * postcentral fissure-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83732 ] * postcentral fissure ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014474 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0014674.md b/md/UBERON/74/UBERON_0014674.md index a7714aef95..97099354bc 100644 --- a/md/UBERON/74/UBERON_0014674.md +++ b/md/UBERON/74/UBERON_0014674.md @@ -6,8 +6,8 @@ ## Synonyms - * distal interphalangeal joint of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35387] - * distal interphalangeal joint of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35387] + * distal interphalangeal joint of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35387 ] + * distal interphalangeal joint of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35387 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014674 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_0014874.md b/md/UBERON/74/UBERON_0014874.md index 5b2b0f7175..2e0a8ae454 100644 --- a/md/UBERON/74/UBERON_0014874.md +++ b/md/UBERON/74/UBERON_0014874.md @@ -6,10 +6,10 @@ ## Synonyms - * distal end of distal phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33091] - * distal epiphysis of distal phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33091] - * head of distal phalanx of fourth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33091] - * head of distal phalanx of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33091] + * distal end of distal phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33091 ] + * distal epiphysis of distal phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33091 ] + * head of distal phalanx of fourth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33091 ] + * head of distal phalanx of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33091 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pedal digit 4](../../UBERON/18/UBERON_0004318.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014874 + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000074.md b/md/UBERON/74/UBERON_2000074.md index 313862ffe5..18ffaa049a 100644 --- a/md/UBERON/74/UBERON_2000074.md +++ b/md/UBERON/74/UBERON_2000074.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000074 * *Label* = somite 26 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 26 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000174.md b/md/UBERON/74/UBERON_2000174.md index 3f10671233..990ac8bf5f 100644 --- a/md/UBERON/74/UBERON_2000174.md +++ b/md/UBERON/74/UBERON_2000174.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000274.md b/md/UBERON/74/UBERON_2000274.md index 18c2daa260..03c3a207ba 100644 --- a/md/UBERON/74/UBERON_2000274.md +++ b/md/UBERON/74/UBERON_2000274.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000474.md b/md/UBERON/74/UBERON_2000474.md index 7af18ae674..8089ba2d2e 100644 --- a/md/UBERON/74/UBERON_2000474.md +++ b/md/UBERON/74/UBERON_2000474.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000474 * *Label* = intercalar - * *Definition* = Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * opisthotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000474] + * opisthotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000474 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000674.md b/md/UBERON/74/UBERON_2000674.md index 0c89ae808c..79a9e85a4d 100644 --- a/md/UBERON/74/UBERON_2000674.md +++ b/md/UBERON/74/UBERON_2000674.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000674 * *Label* = interopercle - * *Definition* = Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * interopercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000674[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * interopercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000674, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000774.md b/md/UBERON/74/UBERON_2000774.md index 82d943a478..bfbe6a5e3c 100644 --- a/md/UBERON/74/UBERON_2000774.md +++ b/md/UBERON/74/UBERON_2000774.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000774 * *Label* = hypaxial region somite 28 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000874.md b/md/UBERON/74/UBERON_2000874.md index 9ad11ff066..f7e962c3f0 100644 --- a/md/UBERON/74/UBERON_2000874.md +++ b/md/UBERON/74/UBERON_2000874.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000874 * *Label* = epaxial region somite 7 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. immel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. immel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2000974.md b/md/UBERON/74/UBERON_2000974.md index b2118019ad..10aedc771c 100644 --- a/md/UBERON/74/UBERON_2000974.md +++ b/md/UBERON/74/UBERON_2000974.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000974 * *Label* = somite 10 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 10 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001274.md b/md/UBERON/74/UBERON_2001274.md index b5263509bd..bbc5bc0d21 100644 --- a/md/UBERON/74/UBERON_2001274.md +++ b/md/UBERON/74/UBERON_2001274.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001274 * *Label* = coronomeckelian - * *Definition* = Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * sesamoid articular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001274] - * sesamoid coronoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001274] + * sesamoid articular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001274 ] + * sesamoid coronoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001274 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001474.md b/md/UBERON/74/UBERON_2001474.md index 6c64e21510..07fb6848b5 100644 --- a/md/UBERON/74/UBERON_2001474.md +++ b/md/UBERON/74/UBERON_2001474.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001474 * *Label* = sublingual dorsal and ventral separate - * *Definition* = Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001674.md b/md/UBERON/74/UBERON_2001674.md index 1d12ab003b..4a78504962 100644 --- a/md/UBERON/74/UBERON_2001674.md +++ b/md/UBERON/74/UBERON_2001674.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001674 * *Label* = infraorbital 6 - * *Definition* = Infraorbital that is the sixth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Infraorbital that is the sixth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dermosphenotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001674] + * dermosphenotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001674 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001774.md b/md/UBERON/74/UBERON_2001774.md index f8a40c345e..60ab08dbe2 100644 --- a/md/UBERON/74/UBERON_2001774.md +++ b/md/UBERON/74/UBERON_2001774.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001874.md b/md/UBERON/74/UBERON_2001874.md index ce5244e5c4..6cd4a2dacb 100644 --- a/md/UBERON/74/UBERON_2001874.md +++ b/md/UBERON/74/UBERON_2001874.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001874 * *Label* = basibranchial 2 cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 2 (pharyngeal arch 4). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 2 element](../../UBERON/16/UBERON_2001916.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2001974.md b/md/UBERON/74/UBERON_2001974.md index 9731721f38..19b1454b8f 100644 --- a/md/UBERON/74/UBERON_2001974.md +++ b/md/UBERON/74/UBERON_2001974.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2002074.md b/md/UBERON/74/UBERON_2002074.md index 6f7116d62f..029fc6579d 100644 --- a/md/UBERON/74/UBERON_2002074.md +++ b/md/UBERON/74/UBERON_2002074.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002074 * *Label* = external anterior process of basipterygium - * *Definition* = Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * external anterior arm of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002074] - * external arm of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002074] - * lateral anterior process of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002074] - * lateral pelvic process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://hdl.handle.net/10088/11710] + * external anterior arm of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002074 ] + * external arm of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002074 ] + * lateral anterior process of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002074 ] + * lateral pelvic process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://hdl.handle.net/10088/11710 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2002174.md b/md/UBERON/74/UBERON_2002174.md index 34cf9560aa..1c8004d19b 100644 --- a/md/UBERON/74/UBERON_2002174.md +++ b/md/UBERON/74/UBERON_2002174.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002174 * *Label* = octaval nerve motor nucleus - * *Definition* = Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17182783] + * *Definition* = Hindbrain nucleus which consists of cell bodies whose axons exit the hindbrain via cranial nerve VIII and innervate hair cells of the lateral line and inner ear. The neurons of these nuclei are unusual in that they extend both contra- and ipsilateral dendrites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17182783 ] ## Synonyms @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2002274.md b/md/UBERON/74/UBERON_2002274.md index 7bb12e46b6..07939fc34e 100644 --- a/md/UBERON/74/UBERON_2002274.md +++ b/md/UBERON/74/UBERON_2002274.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002274 * *Label* = transforming ctenoid scale - * *Definition* = Ctenoid scale with two or three alternating rows of cteni marginally and truncated cteni submarginally. (Roberts 1993). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ctenoid scale with two or three alternating rows of cteni marginally and truncated cteni submarginally. (Roberts 1993). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2005074.md b/md/UBERON/74/UBERON_2005074.md index 14696e770a..b160c3154d 100644 --- a/md/UBERON/74/UBERON_2005074.md +++ b/md/UBERON/74/UBERON_2005074.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005074 * *Label* = central cardiac conduction system - * *Definition* = Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2005174.md b/md/UBERON/74/UBERON_2005174.md index eef9fbcf0f..f0069f8412 100644 --- a/md/UBERON/74/UBERON_2005174.md +++ b/md/UBERON/74/UBERON_2005174.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005174 * *Label* = ventral liver lobe - * *Definition* = Portion of the liver which develops on the fish's ventral side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the liver which develops on the fish's ventral side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * 3rd lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005174] - * third lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005174] + * 3rd lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005174 ] + * third lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005174 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2005374.md b/md/UBERON/74/UBERON_2005374.md index ac6885d67d..b71b60881c 100644 --- a/md/UBERON/74/UBERON_2005374.md +++ b/md/UBERON/74/UBERON_2005374.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005374 * *Label* = dorsal fin distal radial bone 3 - * *Definition* = dorsal fin distal radial 3 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 3 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 3](../../UBERON/74/UBERON_2105374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2105374.md b/md/UBERON/74/UBERON_2105374.md index 82531728c0..ff3bc7ec86 100644 --- a/md/UBERON/74/UBERON_2105374.md +++ b/md/UBERON/74/UBERON_2105374.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 3](../../UBERON/66/UBERON_2005366.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_2205374.md b/md/UBERON/74/UBERON_2205374.md index 9232c2f790..878241ea69 100644 --- a/md/UBERON/74/UBERON_2205374.md +++ b/md/UBERON/74/UBERON_2205374.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205374 * *Label* = dorsal fin distal radial cartilage 3 - * *Definition* = dorsal fin distal radial 3 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 3 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 3](../../UBERON/74/UBERON_2105374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3000074.md b/md/UBERON/74/UBERON_3000074.md index 1a708a2348..64dd252686 100644 --- a/md/UBERON/74/UBERON_3000074.md +++ b/md/UBERON/74/UBERON_3000074.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000074 * *Label* = cartilago orbitalis - * *Definition* = Lateral wall of chondrocranial braincase between lamina orbitonasalis and pila metoptica. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LT] + * *Definition* = Lateral wall of chondrocranial braincase between lamina orbitonasalis and pila metoptica. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LT ] ## Synonyms - * dorsale randspange [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000074] + * dorsale randspange [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000074 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3000374.md b/md/UBERON/74/UBERON_3000374.md index 39a5f31a6e..b1fe9edc8c 100644 --- a/md/UBERON/74/UBERON_3000374.md +++ b/md/UBERON/74/UBERON_3000374.md @@ -6,7 +6,7 @@ ## Synonyms - * median palatal squame [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000374] + * median palatal squame [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000374 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3000774.md b/md/UBERON/74/UBERON_3000774.md index e88c9e8a86..0906f9aeaa 100644 --- a/md/UBERON/74/UBERON_3000774.md +++ b/md/UBERON/74/UBERON_3000774.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000774 * *Label* = ilial shaft - * *Definition* = Anterior rod that articulates with the sacrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior rod that articulates with the sacrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3000874.md b/md/UBERON/74/UBERON_3000874.md index 7fd258b0c7..fa515ec1b5 100644 --- a/md/UBERON/74/UBERON_3000874.md +++ b/md/UBERON/74/UBERON_3000874.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000874 * *Label* = crista ischii - * *Definition* = Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3010074.md b/md/UBERON/74/UBERON_3010074.md index 601b71538d..aa318ee963 100644 --- a/md/UBERON/74/UBERON_3010074.md +++ b/md/UBERON/74/UBERON_3010074.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010074 * *Label* = M. ileo-femoralis - * *Definition* = Originates from the postero-ventral surface of the ala ossis ilei and from the insertion tendon of M. ileo-fibularis. Inserts along the dorso-medial border of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the postero-ventral surface of the ala ossis ilei and from the insertion tendon of M. ileo-fibularis. Inserts along the dorso-medial border of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_3010274.md b/md/UBERON/74/UBERON_3010274.md index 5030286af1..13464c6db9 100644 --- a/md/UBERON/74/UBERON_3010274.md +++ b/md/UBERON/74/UBERON_3010274.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010274 * *Label* = obsolete epithelial cell - * *Definition* = Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000066 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/74/UBERON_4000074.md b/md/UBERON/74/UBERON_4000074.md index c4976c816b..518357226f 100644 --- a/md/UBERON/74/UBERON_4000074.md +++ b/md/UBERON/74/UBERON_4000074.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000074 * *Label* = palaeoniscoid scale - * *Definition* = Multi-tissue structure composed of ganoine, dentine and bone; not known in extant taxa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Multi-tissue structure composed of ganoine, dentine and bone; not known in extant taxa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms - * Palaeoniscus-type scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * Palaeoniscus-type scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_4000174.md b/md/UBERON/74/UBERON_4000174.md index 081f2e4973..893fae28f3 100644 --- a/md/UBERON/74/UBERON_4000174.md +++ b/md/UBERON/74/UBERON_4000174.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000174 * *Label* = caudal fin lepidotrichium - * *Definition* = Lepidotrichium that is part of the caudal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Lepidotrichium that is part of the caudal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * caudal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000174] + * caudal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000174 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal fin](../../UBERON/64/UBERON_4000164.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/74/UBERON_4200174.md b/md/UBERON/74/UBERON_4200174.md index eaa8cbc23f..afe666fa0c 100644 --- a/md/UBERON/74/UBERON_4200174.md +++ b/md/UBERON/74/UBERON_4200174.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0000075.md b/md/UBERON/75/UBERON_0000075.md index 516eb59b55..071501e51f 100644 --- a/md/UBERON/75/UBERON_0000075.md +++ b/md/UBERON/75/UBERON_0000075.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000075 * *Label* = subdivision of skeletal system - * *Definition* = Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * skeletal system subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85544] + * skeletal system subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85544 ] * skeletal system part ## Cross-references * FMA:85544 * SCTID:118966000 - * UMLS:C1519343 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skeletal_System_Part] + * UMLS:C1519343 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skeletal_System_Part ] * galen:ComplexSkeletalStructure * ncithesaurus:Skeletal_System_Part @@ -36,8 +36,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010322 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0000175.md b/md/UBERON/75/UBERON_0000175.md index b60b5be8eb..a2b6e65787 100644 --- a/md/UBERON/75/UBERON_0000175.md +++ b/md/UBERON/75/UBERON_0000175.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000175 * *Label* = pleural effusion - * *Definition* = Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000033] + * *Definition* = Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000033 ] * *Comment* = cede to MPATH? Note the ncit class is under finding. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0000375.md b/md/UBERON/75/UBERON_0000375.md index c18e0110ef..a10888ef78 100644 --- a/md/UBERON/75/UBERON_0000375.md +++ b/md/UBERON/75/UBERON_0000375.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000375 * *Label* = mandibular nerve - * *Definition* = the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009800[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_nerve] + * *Definition* = the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009800, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_nerve ] ## Synonyms - * inferior maxillary nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular division [V3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular division [Vc] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular division of trigeminal nerve [Vc; V3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular nerve [V3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * mandibular nerve [Vc] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * nervus mandibularis [Vc; V3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * nervus mandibularis [v3] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus mandibularis [vc] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus mandibularis (ramus V3) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010688] - * third division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * third division of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52996] - * trigeminal V nerve mandibular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001101] - * n. mandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandibular_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus mandibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001375] + * inferior maxillary nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular division [V3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular division [Vc] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular division of trigeminal nerve [Vc; V3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular nerve [V3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * mandibular nerve [Vc] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * nervus mandibularis [Vc; V3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * nervus mandibularis [v3] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus mandibularis [vc] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus mandibularis (ramus V3) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010688 ] + * third division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * third division of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52996 ] + * trigeminal V nerve mandibular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001101 ] + * n. mandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandibular_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus mandibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001375 ] ## Cross-references @@ -37,7 +37,7 @@ * MESH:A08.800.800.120.760.500 * OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA * SCTID:280212008 - * UMLS:C0024695 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Maxillary_Nerve] + * UMLS:C0024695 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Maxillary_Nerve ] * VHOG:0001345 * Wikipedia:Mandibular_nerve * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png @@ -62,8 +62,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0000475.md b/md/UBERON/75/UBERON_0000475.md index 7c9c7988ec..0c73cfda6c 100644 --- a/md/UBERON/75/UBERON_0000475.md +++ b/md/UBERON/75/UBERON_0000475.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000475 * *Label* = organism subdivision - * *Definition* = Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000032[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000032, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] * *Comment* = Editor note: Reflects CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency ## Synonyms - * anatomic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002433] + * anatomic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002433 ] * body part - * body region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7153] - * cardinal body part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7153] + * body region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7153 ] + * cardinal body part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7153 ] ## Cross-references @@ -33,7 +33,7 @@ * OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA * TAO:0001308 * TGMA:0001840 - * UMLS:C0229962 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Body_Part] + * UMLS:C0229962 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Body_Part ] * VHOG:0001758 * Wikipedia:Body_part * XAO:0003013 @@ -60,8 +60,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0000975.md b/md/UBERON/75/UBERON_0000975.md index 664adf357e..7c09afe9b8 100644 --- a/md/UBERON/75/UBERON_0000975.md +++ b/md/UBERON/75/UBERON_0000975.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000975 * *Label* = sternum - * *Definition* = A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = A midventral endochondral skeletal element which represents the origin site of the pectoral muscles[PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Development notes: While its developmental origins are similar to the ribs (from the myospetum and septum of the trunk region), it is often associated with the pectoral skeleton, due to both function and physical connections (i.e. the coracoid of archosaurs). It may be a single element or a series of smaller structure (sternebrae). Based on Kardong 2012. [ad]. Editor note: in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum. Taxon notes: It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life[WP] ## Synonyms * vertebrate sternum - * breastbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001302] + * breastbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001302 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A02.835.232.904.766 * OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA * SCTID:302522007 - * UMLS:C0038293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternum] + * UMLS:C0038293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternum ] * VHOG:0000856 * Wikipedia:Sternum * galen:Sternum @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Fishes lack a sternum. (...) A sternum is absent in the first fossil tetrapods, but it is present in modern amphibians. (...) Thus, a sternum occurs in some modern amphibians, birds, mammals and archosaurs. However, its absence in the common ancestors to these groups means that it has arisen independently several times within the field of the midventral connective tissue.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = sternal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001075.md b/md/UBERON/75/UBERON_0001075.md index 964252d935..19e3105d96 100644 --- a/md/UBERON/75/UBERON_0001075.md +++ b/md/UBERON/75/UBERON_0001075.md @@ -7,22 +7,22 @@ ## Synonyms - * body of vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11945] - * centra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * centre vertbral@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000126] + * body of vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11945 ] + * centra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * centre vertbral@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000126 ] * centrum * centrum of vertebra - * corpus vertebra [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus vertebrae (vertebrale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11945] - * prichorde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000126] - * vertebral body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11945] - * vertebral centra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * vertebral centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001457] - * arcocentrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11746457[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * autocentrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11746457[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000126] - * holocentrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11746457] - * postcaudal cartilaginous centrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11746457] - * corpus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_vertebra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpus vertebra [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus vertebrae (vertebrale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11945 ] + * prichorde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000126 ] + * vertebral body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11945 ] + * vertebral centra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * vertebral centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001457 ] + * arcocentrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11746457, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * autocentrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11746457, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000126 ] + * holocentrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11746457 ] + * postcaudal cartilaginous centrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11746457 ] + * corpus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_vertebra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,7 +33,7 @@ * SCTID:361745008 * SCTID:362867001 * TAO:0000126 - * UMLS:C0223084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Body] + * UMLS:C0223084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Body ] * VSAO:0000183 * Wikipedia:Body_of_vertebra * ZFA:0000126 @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal element that surrounds the notochord.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted][Wikipedia:Body_of_vertebra]. * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001175.md b/md/UBERON/75/UBERON_0001175.md index 19a7b30d4d..1134667d1b 100644 --- a/md/UBERON/75/UBERON_0001175.md +++ b/md/UBERON/75/UBERON_0001175.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001175 * *Label* = common hepatic duct - * *Definition* = Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_hepatic_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_hepatic_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part ## Synonyms - * ductus hepaticus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_hepatic_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus hepaticus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_hepatic_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hepatic duct ## Cross-references @@ -19,7 +19,7 @@ * MA:0002660 * MESH:A03.159.183.079.600 * SCTID:245403006 - * UMLS:C0019149 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Hepatic_Duct] + * UMLS:C0019149 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Hepatic_Duct ] * VHOG:0000220 * Wikipedia:Common_hepatic_duct * http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The duct which conveys the bile from the liver and unites with the cystic duct to form the common bile duct. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001275.md b/md/UBERON/75/UBERON_0001275.md index 334fb3f0eb..22c8060b7d 100644 --- a/md/UBERON/75/UBERON_0001275.md +++ b/md/UBERON/75/UBERON_0001275.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001275 * *Label* = pubis - * *Definition* = A paired endochondral bone making up the anteroventral region of the tripartite pelvic girdle forming part of the ventral edge of the acetabulum. The origin site of many proximal hindlimb muscles. [PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = A paired endochondral bone making up the anteroventral region of the tripartite pelvic girdle forming part of the ventral edge of the acetabulum. The origin site of many proximal hindlimb muscles. [PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = AO notes: isa bone zone in FMA ## Synonyms - * os pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubis_%28bone%29] - * pubic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubis_%28bone%29] - * pubis bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubis_%28bone%29] + * os pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubis_%28bone%29 ] + * pubic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubis_%28bone%29 ] + * pubis bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubis_%28bone%29 ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001338 * MESH:A02.835.232.611.781 * SCTID:182035005 - * UMLS:C0034014 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pubic_Bone] + * UMLS:C0034014 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pubic_Bone ] * Wikipedia:Pubis_(bone) * galen:Pubis * ncithesaurus:Pubic_Bone @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pubic endochondral element](../../UBERON/55/UBERON_0015055.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001375.md b/md/UBERON/75/UBERON_0001375.md index 179acc0344..adab0b7e8e 100644 --- a/md/UBERON/75/UBERON_0001375.md +++ b/md/UBERON/75/UBERON_0001375.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001375 * *Label* = semitendinosus - * *Definition* = The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semitendinosus_muscle] + * *Definition* = The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semitendinosus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * semitendinosus muscle - * musculus semitendinosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001236] - * musculus semitendinosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semitendinosus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus semitendinosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001236 ] + * musculus semitendinosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semitendinosus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:22357 * MA:0002375 * SCTID:181685004 - * UMLS:C0224453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semitendinosus] + * UMLS:C0224453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semitendinosus ] * Wikipedia:Semitendinosus_muscle * galen:Semitendinosus * http://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001475.md b/md/UBERON/75/UBERON_0001475.md index cfdfd8308e..633aa80df3 100644 --- a/md/UBERON/75/UBERON_0001475.md +++ b/md/UBERON/75/UBERON_0001475.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:30319 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000211 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0002360 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001475 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/75/UBERON_0001575.md b/md/UBERON/75/UBERON_0001575.md index 64836fa3bf..a7e8c9e1ea 100644 --- a/md/UBERON/75/UBERON_0001575.md +++ b/md/UBERON/75/UBERON_0001575.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001575 * *Label* = extrinsic muscle of tongue - * *Definition* = A muscle organ that attaches the tongue to some other structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Muscles_of_tongue[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/331] + * *Definition* = A muscle organ that attaches the tongue to some other structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Muscles_of_tongue, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/331 ] * *Comment* = The extrinsic muscles originate from bone and extend to the tongue. Their main functions are altering the tongue's position allowing for protrusion, retraction, and side-to-side movement[WP] Innervation: All intrinsic and extrinsic muscles of the tongue are supplied by the hypoglossal nerve (CN XII), except for one of the extrinsic muscles, palatoglossus, which is innervated by the Vagus nerve CN X of the pharyngeal plexus.[WP] ## Synonyms @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [skeletal element](../../UBERON/65/UBERON_0004765.md) and [attaches_to_part_of](../../core#attaches/of/core#attaches_to_part_of.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [innervated_by](../../RO/05/RO_0002005.md) some [hypoglossal nerve](../../UBERON/50/UBERON_0001650.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001675.md b/md/UBERON/75/UBERON_0001675.md index f0ea0c34de..c9dd7b7be4 100644 --- a/md/UBERON/75/UBERON_0001675.md +++ b/md/UBERON/75/UBERON_0001675.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001675 * *Label* = trigeminal ganglion - * *Definition* = A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * 5th ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000295] - * Gasserian ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_ganglion] - * fifth ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000295] - * semilunar ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] - * trigeminal V ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001080] - * Gasser's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001231] - * Gasserian ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * 5th ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000295 ] + * Gasserian ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_ganglion ] + * fifth ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000295 ] + * semilunar ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] + * trigeminal V ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001080 ] + * Gasser's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001231 ] + * Gasserian ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * gV - * ganglion of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001231] - * ganglion semilunare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion trigeminale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001231] - * ganglion trigeminale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigeminal ganglia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ganglion of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001231 ] + * ganglion semilunare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion trigeminale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001231 ] + * ganglion trigeminale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigeminal ganglia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * trigeminus ganglion ## Cross-references @@ -40,7 +40,7 @@ * NeuroNames:1402 * SCTID:244449009 * TAO:0000295 - * UMLS:C0040995 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trigeminal_Ganglion] + * UMLS:C0040995 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trigeminal_Ganglion ] * VHOG:0000694 * Wikipedia:Trigeminal_ganglion * XAO:0000427 @@ -74,8 +74,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001775.md b/md/UBERON/75/UBERON_0001775.md index ca6d7104c2..2abc2da303 100644 --- a/md/UBERON/75/UBERON_0001775.md +++ b/md/UBERON/75/UBERON_0001775.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001775 * *Label* = ciliary body - * *Definition* = circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_body] + * *Definition* = circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_body ] ## Synonyms * ocular ciliary body * anterior uvea - * ciliary bodies [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000102[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * corpus ciliare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus ciliare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_body] + * ciliary bodies [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000102, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * corpus ciliare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_body ] + * corpus ciliare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A09.371.894.280 * NeuroNames:1571 * SCTID:263340007 - * UMLS:C0008779 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ciliary_Body] + * UMLS:C0008779 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ciliary_Body ] * VHOG:0000102 * Wikipedia:Ciliary_body * XAO:0000186 @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001875.md b/md/UBERON/75/UBERON_0001875.md index dcca66d98f..70639cfb21 100644 --- a/md/UBERON/75/UBERON_0001875.md +++ b/md/UBERON/75/UBERON_0001875.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001875 * *Label* = globus pallidus - * *Definition* = Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1234] + * *Definition* = Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1234 ] * *Comment* = BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus ## Synonyms - * pale body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1234] - * paleostriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Globus_pallidus] - * globus pallidus (Burdach) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:231] - * nucleus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:231[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pallidium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Globus_pallidus] - * pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021759[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1234[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Globus_pallidus] + * pale body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1234 ] + * paleostriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Globus_pallidus ] + * globus pallidus (Burdach) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:231 ] + * nucleus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:231, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pallidium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Globus_pallidus ] + * pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021759, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1234, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Globus_pallidus ] ## Cross-references @@ -28,10 +28,10 @@ * MAT:0000510 * MESH:A08.186.211.730.885.105.487.397 * NIF_GrossAnatomy:birnlex_1234 - * NeuroNames:231 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1234] + * NeuroNames:231 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1234 ] * SCTID:362361005 - * UMLS:C0017651 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1234] - * UMLS:C0017651 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Globus_Pallidus] + * UMLS:C0017651 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1234 ] + * UMLS:C0017651 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Globus_Pallidus ] * Wikipedia:Globus_pallidus * http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif @@ -48,7 +48,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [cerebral hemisphere](../../UBERON/69/UBERON_0001869.md) * [part_of](../../BFO/50/BFO_0000050.md) some [basal ganglion](../../UBERON/20/UBERON_0002420.md) * [part_of](../../BFO/50/BFO_0000050.md) some [pallidum](../../UBERON/14/UBERON_0006514.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [lentiform nucleus](../../UBERON/63/UBERON_0002263.md) * [develops_from_part_of](../../RO/25/RO_0002225.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Equivalencies @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA][FMA:61835]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pallidal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0001975.md b/md/UBERON/75/UBERON_0001975.md index f5f1d475a7..d295941c13 100644 --- a/md/UBERON/75/UBERON_0001975.md +++ b/md/UBERON/75/UBERON_0001975.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001975 * *Label* = serosa of esophagus - * *Definition* = A serous membrane that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * esophagus serosa - * esophagus serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serosa of abdominal part of esophagus - * serosa of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * serosa of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * serosa of oesophagus * serous coat of oesophagus - * serous membrane of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica serosa oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63057[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * serous membrane of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica serosa oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63057, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * oesophagus serosa ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002075.md b/md/UBERON/75/UBERON_0002075.md index 4ada9aba0e..09ad803694 100644 --- a/md/UBERON/75/UBERON_0002075.md +++ b/md/UBERON/75/UBERON_0002075.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002075 * *Label* = viscus - * *Definition* = An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001491[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Viscus] + * *Definition* = An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001491, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Viscus ] * *Comment* = general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs ## Synonyms - * visceral organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0002201] - * visceral organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000019] - * Organsystem@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001491] + * visceral organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0002201 ] + * visceral organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000019 ] + * Organsystem@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001491 ] * viscera ## Cross-references @@ -24,7 +24,7 @@ * MESH:A01.960 * RETIRED_EHDAA2:0002201 * SCTID:118760003 - * UMLS:C0042779 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Viscera] + * UMLS:C0042779 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Viscera ] * Wikipedia:Viscus * XAO:0003034 * ncithesaurus:Viscera @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) and [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002175.md b/md/UBERON/75/UBERON_0002175.md index 33a25d0078..3ad6407102 100644 --- a/md/UBERON/75/UBERON_0002175.md +++ b/md/UBERON/75/UBERON_0002175.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002175 * *Label* = intermediolateral nucleus - * *Definition* = The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediolateral_nucleus] + * *Definition* = The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediolateral_nucleus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * intermediolateral nucleus of spinal cord - * nucleus intermediolateralis medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73915[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus intermediolateralis medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73915, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * spinal cord intermediolateral nucleus - * nucleus intermediolateralis medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediolateral_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus intermediolateralis medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediolateral_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002275.md b/md/UBERON/75/UBERON_0002275.md index 18875a2cb8..cdaa10465b 100644 --- a/md/UBERON/75/UBERON_0002275.md +++ b/md/UBERON/75/UBERON_0002275.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002375.md b/md/UBERON/75/UBERON_0002375.md index c76eefaf05..4b91be0828 100644 --- a/md/UBERON/75/UBERON_0002375.md +++ b/md/UBERON/75/UBERON_0002375.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002375 * *Label* = cricoid cartilage - * *Definition* = A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:rd[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/257] + * *Definition* = A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:rd, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/257 ] ## Synonyms - * cartilago cricoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoid_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cartilaginis cricoideae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoid_cartilage[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * cartilago cricoidea [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * cartilago cricotrachealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000675] - * cricoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoid_cartilage] - * cricoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoid_cartilage] - * innominate cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001308] - * krykoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cricoid_cartilage] + * cartilago cricoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoid_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cartilaginis cricoideae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoid_cartilage, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * cartilago cricoidea [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * cartilago cricotrachealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000675 ] + * cricoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoid_cartilage ] + * cricoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoid_cartilage ] + * innominate cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001308 ] + * krykoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cricoid_cartilage ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0001762 * MESH:A02.165.507.211 * SCTID:263484006 - * UMLS:C0010323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cricoid_Cartilage] + * UMLS:C0010323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cricoid_Cartilage ] * VHOG:0001308 * Wikipedia:Cricoid_cartilage * http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ringlike cartilage forming the caudal part of the larynx. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002475.md b/md/UBERON/75/UBERON_0002475.md index bcdb97f8cd..cd94417796 100644 --- a/md/UBERON/75/UBERON_0002475.md +++ b/md/UBERON/75/UBERON_0002475.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002475 * *Label* = saphenous nerve - * *Definition* = The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saphenous_nerve] + * *Definition* = The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saphenous_nerve ] ## Synonyms - * nervus saphenus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Saphenous_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus saphenus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Saphenous_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002575.md b/md/UBERON/75/UBERON_0002575.md index fe26858e21..ab115acd53 100644 --- a/md/UBERON/75/UBERON_0002575.md +++ b/md/UBERON/75/UBERON_0002575.md @@ -13,9 +13,9 @@ * FMA:80184 * NIF_GrossAnatomy:birnlex_1054 * NeuroNames:6 - * OldNeuroNames:-1761421113 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1054] + * OldNeuroNames:-1761421113 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1054 ] * SCTID:279197009 - * UMLS:C0458323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1054] + * UMLS:C0458323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1054 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002675.md b/md/UBERON/75/UBERON_0002675.md index bc0dcab74c..c3499f89b2 100644 --- a/md/UBERON/75/UBERON_0002675.md +++ b/md/UBERON/75/UBERON_0002675.md @@ -6,15 +6,15 @@ ## Synonyms - * sulcus diagonalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:67[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus diagonalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:67, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dias * FMA:83758 * NIF_GrossAnatomy:birnlex_1344 - * NeuroNames:67 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1344] - * UMLS:C0694582 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1344] + * NeuroNames:67 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1344 ] + * UMLS:C0694582 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1344 ] ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002775.md b/md/UBERON/75/UBERON_0002775.md index be68f619c9..c545766720 100644 --- a/md/UBERON/75/UBERON_0002775.md +++ b/md/UBERON/75/UBERON_0002775.md @@ -7,19 +7,19 @@ ## Synonyms * bundle of rasmussen - * efferent cochlear bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72485] + * efferent cochlear bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72485 ] * olivocochlear bundle of rasmussen - * olivocochlear tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72485] - * tractus olivocochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72485[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * olivocochlear tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72485 ] + * tractus olivocochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72485, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ocb * FMA:72485 * NIF_GrossAnatomy:birnlex_1666 - * NeuroNames:577 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1666] + * NeuroNames:577 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1666 ] * SCTID:369030009 - * UMLS:C0228447 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1666] + * UMLS:C0228447 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1666 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002875.md b/md/UBERON/75/UBERON_0002875.md index 4d30342642..7240deda6c 100644 --- a/md/UBERON/75/UBERON_0002875.md +++ b/md/UBERON/75/UBERON_0002875.md @@ -6,16 +6,16 @@ ## Synonyms - * MPCu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2648[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus pericuneatus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:770[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * MPCu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2648, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus pericuneatus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:770, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:MPCu * FMA:72605 * NIF_GrossAnatomy:birnlex_2648 - * NeuroNames:770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2648] - * UMLS:C0262288 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2648] + * NeuroNames:770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2648 ] + * UMLS:C0262288 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2648 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0002975.md b/md/UBERON/75/UBERON_0002975.md index ad7f5d046b..c7b4ee25a3 100644 --- a/md/UBERON/75/UBERON_0002975.md +++ b/md/UBERON/75/UBERON_0002975.md @@ -6,18 +6,18 @@ ## Synonyms - * medial nucleus of oculomotor nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * medial oculomotor cell column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72421] - * M3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_813[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus nervi oculomotorii, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:495[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medial nucleus of oculomotor nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * medial oculomotor cell column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72421 ] + * M3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_813, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus nervi oculomotorii, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:495, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:M3 * FMA:72421 * NIF_GrossAnatomy:birnlex_813 - * NeuroNames:495 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_813] - * UMLS:C0175379 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_813] + * NeuroNames:495 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_813 ] + * UMLS:C0175379 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_813 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0003075.md b/md/UBERON/75/UBERON_0003075.md index d6be8cceb2..6672516329 100644 --- a/md/UBERON/75/UBERON_0003075.md +++ b/md/UBERON/75/UBERON_0003075.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003075 * *Label* = neural plate - * *Definition* = A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OMD:neural+plate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_plate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OMD:neural+plate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_plate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lamina neuralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neural_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina neuralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neural_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * presumptive central nervous system ## Cross-references @@ -22,7 +22,7 @@ * NeuroNames:1362 * RETIRED_EHDAA2:0001252 * TAO:0000132 - * UMLS:C0920623 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Plate] + * UMLS:C0920623 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Plate ] * VHOG:0000068 * Wikipedia:Neural_plate * XAO:0000249 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0003175.md b/md/UBERON/75/UBERON_0003175.md index 6bb0454c2e..ec6f38f382 100644 --- a/md/UBERON/75/UBERON_0003175.md +++ b/md/UBERON/75/UBERON_0003175.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004582 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000815 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003175 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/75/UBERON_0003475.md b/md/UBERON/75/UBERON_0003475.md index 04b27d82dd..06744a1d49 100644 --- a/md/UBERON/75/UBERON_0003475.md +++ b/md/UBERON/75/UBERON_0003475.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003475 * *Label* = ureteric vein - * *Definition* = A vein that is part of a ureter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a ureter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ureter vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ureter vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0003575.md b/md/UBERON/75/UBERON_0003575.md index c326f18c2c..f38e7c6d29 100644 --- a/md/UBERON/75/UBERON_0003575.md +++ b/md/UBERON/75/UBERON_0003575.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003575 * *Label* = wrist connective tissue - * *Definition* = A portion of connective tissue that is part of a wrist [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a wrist [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * carpal region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * carpal region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * carpal region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of wrist [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wrist portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wrist textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * carpal region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * carpal region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of wrist [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wrist portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wrist textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0003675.md b/md/UBERON/75/UBERON_0003675.md index eebab4ebd1..e482d98b5a 100644 --- a/md/UBERON/75/UBERON_0003675.md +++ b/md/UBERON/75/UBERON_0003675.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003675 * *Label* = tooth crown - * *Definition* = The portion of the tooth covered by enamel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Corona_Dentis] + * *Definition* = The portion of the tooth covered by enamel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Corona_Dentis ] ## Synonyms - * anatomical crown [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55623] - * corona dentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Corona_Dentis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crown of tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55623] - * tooth crown [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55623] + * anatomical crown [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55623 ] + * corona dentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Corona_Dentis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crown of tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55623 ] + * tooth crown [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55623 ] * crown ## Cross-references @@ -19,7 +19,7 @@ * GAID:1275 * MESH:A14.254.900.710 * SCTID:362106009 - * UMLS:C0226993 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corona_Dentis] + * UMLS:C0226993 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corona_Dentis ] * ncithesaurus:Corona_Dentis ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0003975.md b/md/UBERON/75/UBERON_0003975.md index 42c91cf7da..9531b31540 100644 --- a/md/UBERON/75/UBERON_0003975.md +++ b/md/UBERON/75/UBERON_0003975.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003975 * *Label* = internal female genitalia - * *Definition* = the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009209] + * *Definition* = the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009209 ] ## Synonyms - * female internal genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45654] - * internal female genital organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003099] - * internal genitalia of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organa genitalia feminina interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003099] + * female internal genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45654 ] + * internal female genital organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003099 ] + * internal genitalia of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organa genitalia feminina interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003099 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [internal genitalia](../../UBERON/75/UBERON_0004175.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004075.md b/md/UBERON/75/UBERON_0004075.md index 4f9860499f..4ef4237608 100644 --- a/md/UBERON/75/UBERON_0004075.md +++ b/md/UBERON/75/UBERON_0004075.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004075 * *Label* = cerebellum vermis lobule II - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009989] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009989 ] * *Comment* = central vs alar central? II and III? part_of CENT in ABA ## Synonyms - * lobule II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CENT2] + * lobule II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CENT2 ] * lobule II of cerebellum vermis - * vermic lobule II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081225] - * central lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000999] + * vermic lobule II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081225 ] + * central lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000999 ] * central lobule of cerebellum ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004175.md b/md/UBERON/75/UBERON_0004175.md index 76203f5895..90c472ca9c 100644 --- a/md/UBERON/75/UBERON_0004175.md +++ b/md/UBERON/75/UBERON_0004175.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004175 * *Label* = internal genitalia - * *Definition* = The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035260] + * *Definition* = The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035260 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004275.md b/md/UBERON/75/UBERON_0004275.md index 8c0d38e52e..5c50c4449c 100644 --- a/md/UBERON/75/UBERON_0004275.md +++ b/md/UBERON/75/UBERON_0004275.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004275 * *Label* = third ventricle choroid plexus epithelium - * *Definition* = A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus epithelium that is part of a third ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chorioid plexus of cerebral hemisphere epithelium of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelial tissue of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelium of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of choroid plexus of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of chorioid plexus of cerebral hemisphere of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of choroid plexus of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle chorioid plexus of cerebral hemisphere epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle chorioid plexus of cerebral hemisphere epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle choroid plexus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle epithelial tissue of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle epithelium of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * third ventricle epithelium of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chorioid plexus of cerebral hemisphere epithelium of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelial tissue of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelium of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of choroid plexus of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of chorioid plexus of cerebral hemisphere of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of choroid plexus of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle chorioid plexus of cerebral hemisphere epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle chorioid plexus of cerebral hemisphere epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle choroid plexus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle epithelial tissue of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle epithelium of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * third ventricle epithelium of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus epithelium](../../UBERON/11/UBERON_0003911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004375.md b/md/UBERON/75/UBERON_0004375.md index 70ef810799..fa8c23441e 100644 --- a/md/UBERON/75/UBERON_0004375.md +++ b/md/UBERON/75/UBERON_0004375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004375 * *Label* = bone of free limb or fin - * *Definition* = A bone that is part of an appendage [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of an appendage [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired limb/fin](../../UBERON/08/UBERON_0004708.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004475.md b/md/UBERON/75/UBERON_0004475.md index 8c9b1a921a..02aac1d9bf 100644 --- a/md/UBERON/75/UBERON_0004475.md +++ b/md/UBERON/75/UBERON_0004475.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004475 * *Label* = musculature of hip - * *Definition* = Any collection of muscles that is part of a hip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a hip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hip musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50227] - * muscle group of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50227] - * set of muscles of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50227] + * hip musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50227 ] + * muscle group of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50227 ] + * set of muscles of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50227 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004675.md b/md/UBERON/75/UBERON_0004675.md index 098b3b3e4e..078810ecf1 100644 --- a/md/UBERON/75/UBERON_0004675.md +++ b/md/UBERON/75/UBERON_0004675.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004675 * *Label* = hypoglossal nerve root - * *Definition* = A nerve root that continuous_with a hypoglossal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve root that continuous_with a hypoglossal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * central part of hypoglossal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72632] - * hypoglossal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72632] - * hypoglossal nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1588] - * hypoglossal nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72632] - * root of hypoglossal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72632] - * hypoglossal nerve/ root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:12n] + * central part of hypoglossal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72632 ] + * hypoglossal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72632 ] + * hypoglossal nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1588 ] + * hypoglossal nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72632 ] + * root of hypoglossal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72632 ] + * hypoglossal nerve/ root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:12n ] ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [hypoglossal nerve](../../UBERON/50/UBERON_0001650.md) and [nerve root](../../UBERON/11/UBERON_0002211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004775.md b/md/UBERON/75/UBERON_0004775.md index 5bf0ae3b05..fbc1bde0a9 100644 --- a/md/UBERON/75/UBERON_0004775.md +++ b/md/UBERON/75/UBERON_0004775.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004775 * *Label* = outer renal medulla vasa recta - * *Definition* = A vasa recta that is part of a outer medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasa recta that is part of a outer medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney outer medulla vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011330] - * kidney outer renal medulla vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011330] - * outer medulla of kidney vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outer zone of medulla of kidney vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * outer zone of renal medulla vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of outer medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of outer renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of outer zone of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of outer zone of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * kidney outer medulla vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011330 ] + * kidney outer renal medulla vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011330 ] + * outer medulla of kidney vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outer zone of medulla of kidney vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * outer zone of renal medulla vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of outer medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of outer renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of outer zone of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of outer zone of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [outer medulla of kidney](../../UBERON/93/UBERON_0001293.md) and [vasa recta](../../UBERON/26/UBERON_0004726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0004875.md b/md/UBERON/75/UBERON_0004875.md index 3ff1e84cdc..26e2704495 100644 --- a/md/UBERON/75/UBERON_0004875.md +++ b/md/UBERON/75/UBERON_0004875.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004875 * *Label* = nephrogenic cord - * *Definition* = a portion of the urogenital ridge which is the source of much of the urinary system[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephrogenic_cord] + * *Definition* = a portion of the urogenital ridge which is the source of much of the urinary system[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephrogenic_cord ] * *Comment* = part_of or develops_from urogenital ridge? ## Synonyms - * chorda nephrogenica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephrogenic_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chorda nephrogenica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephrogenic_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:72168 * SCTID:361405003 - * UMLS:C1283944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nephrogenic_Cord] + * UMLS:C1283944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nephrogenic_Cord ] * Wikipedia:Nephrogenic_cord * ncithesaurus:Nephrogenic_Cord @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005075.md b/md/UBERON/75/UBERON_0005075.md index b227afb0a9..242d3d2cb3 100644 --- a/md/UBERON/75/UBERON_0005075.md +++ b/md/UBERON/75/UBERON_0005075.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005075 * *Label* = forebrain-midbrain boundary - * *Definition* = An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical boundary that adjacent_to a forebrain and adjacent_to a midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forebrain midbrain boundary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001367] + * forebrain midbrain boundary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001367 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) and [adjacent to](../../RO/20/RO_0002220.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The boundary between the diencephalon and the mesencephalon.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from forebrain midbrain boundary neural tube (TAO:0007040)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005175.md b/md/UBERON/75/UBERON_0005175.md index bb7a982331..2c3744a2de 100644 --- a/md/UBERON/75/UBERON_0005175.md +++ b/md/UBERON/75/UBERON_0005175.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005175 * *Label* = chest organ - * *Definition* = An organ that is part of a chest [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ that is part of a chest [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005275.md b/md/UBERON/75/UBERON_0005275.md index 15564257a6..fd68a69b11 100644 --- a/md/UBERON/75/UBERON_0005275.md +++ b/md/UBERON/75/UBERON_0005275.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005375.md b/md/UBERON/75/UBERON_0005375.md index e2c9b51816..d4959934d1 100644 --- a/md/UBERON/75/UBERON_0005375.md +++ b/md/UBERON/75/UBERON_0005375.md @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral ridge of gray matter in each half of the spinal cord. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005475.md b/md/UBERON/75/UBERON_0005475.md index 7706a5bb51..44c49df6eb 100644 --- a/md/UBERON/75/UBERON_0005475.md +++ b/md/UBERON/75/UBERON_0005475.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005475 * *Label* = sigmoid sinus - * *Definition* = a portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sigmoid_sinus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryS.html] + * *Definition* = a portion of the lateral venous sinus, bulging prominently into the mastoid cavity, that serves as a principal conduit by which blood leaves the cranium[EPIC]. The sigmoid is drained by the internal jugular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sigmoid_sinus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryS.html ] ## Synonyms - * sulcus sigmoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sigmoid_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus sigmoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sigmoid_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The sigmoid sinuses, within a human head, are 2 areas beneath the brain, which allow blood veins to span the area, from the center of the head downward. They drain from the transverse sinuses (under the back of the brain) to the internal jugular vein. Each sigmoid sinus begins beneath the temporal bone and follows a tortuous course to the jugular foramen, at which point the sinus becomes continuous with the internal jugular vein[Wikipedia:Sigmoid_sinus]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005575.md b/md/UBERON/75/UBERON_0005575.md index 7e83030ae4..c302ac3a0f 100644 --- a/md/UBERON/75/UBERON_0005575.md +++ b/md/UBERON/75/UBERON_0005575.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005575 * *Label* = rhombomere 3 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000950] + * roof plate rhombomere 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000950 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 3](../../UBERON/07/UBERON_0005507.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005675.md b/md/UBERON/75/UBERON_0005675.md index 43e86716a4..0ed7578b5e 100644 --- a/md/UBERON/75/UBERON_0005675.md +++ b/md/UBERON/75/UBERON_0005675.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005675 * *Label* = right lung caudal lobe endothelium - * *Definition* = An endothelium that is part of a lower lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a lower lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of right lung](../../UBERON/71/UBERON_0002171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005875.md b/md/UBERON/75/UBERON_0005875.md index 25a5e53574..1c2593b5bd 100644 --- a/md/UBERON/75/UBERON_0005875.md +++ b/md/UBERON/75/UBERON_0005875.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005875 * *Label* = 4th arch pharyngeal cleft - * *Definition* = A groove that is situated between the 4th and 5th pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:OG] + * *Definition* = A groove that is situated between the 4th and 5th pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:OG ] ## Synonyms - * 4th arch branchial groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000088] - * 4th arch pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000089] - * 4th pharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000968] - * 4th pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000577] - * branchial groove of 4th arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16761] - * 4th pharyngeal cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000968] + * 4th arch branchial groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000088 ] + * 4th arch pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000089 ] + * 4th pharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000968 ] + * 4th pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000577 ] + * branchial groove of 4th arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16761 ] + * 4th pharyngeal cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000968 ] ## Cross-references @@ -31,12 +31,12 @@ ## Superclasses * [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 5](../../UBERON/16/UBERON_0003116.md) and [pharyngeal cleft](../../UBERON/79/UBERON_0005879.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0005975.md b/md/UBERON/75/UBERON_0005975.md index 0105051b17..cd2e49b568 100644 --- a/md/UBERON/75/UBERON_0005975.md +++ b/md/UBERON/75/UBERON_0005975.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005975 * *Label* = hair follicle bulge - * *Definition* = the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009759] + * *Definition* = the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009759 ] ## Synonyms - * bulge of hair follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70735] + * bulge of hair follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70735 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006075.md b/md/UBERON/75/UBERON_0006075.md index f7332ff111..a622922510 100644 --- a/md/UBERON/75/UBERON_0006075.md +++ b/md/UBERON/75/UBERON_0006075.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006075 * *Label* = sacral region of vertebral column - * *Definition* = Subdivision of vertebral column that corresponds to the sacral subdivision of the body, containing the sacral vertebrae or sacrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = Subdivision of vertebral column that corresponds to the sacral subdivision of the body, containing the sacral vertebrae or sacrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] * *Comment* = In adult humans, the sacral skeleton is fused and called the sacrum ## Synonyms - * sacral skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001772] + * sacral skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001772 ] * sacrum ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [sacral region](../../UBERON/73/UBERON_0005473.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the vertebral column represented by one or two vertebrae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006175.md b/md/UBERON/75/UBERON_0006175.md index 8cd398f5b1..0471a44a5e 100644 --- a/md/UBERON/75/UBERON_0006175.md +++ b/md/UBERON/75/UBERON_0006175.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006175 * *Label* = pronephric distal tubule - * *Definition* = A pronephric nephron tubule is an epithelial tube that is part of the pronephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0039013] + * *Definition* = A pronephric nephron tubule is an epithelial tube that is part of the pronephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0039013 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal tubule](../../UBERON/35/UBERON_0004135.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006275.md b/md/UBERON/75/UBERON_0006275.md index 0ce50dbce6..ecf3e8d0df 100644 --- a/md/UBERON/75/UBERON_0006275.md +++ b/md/UBERON/75/UBERON_0006275.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006275 * *Label* = pericardio-peritoneal canal - * *Definition* = Each of the canals that connects the pericardial cavity with the peritoneal cavity and becomes a pleural cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001498[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + p.42[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + see_Kaufman_MH_and_Bard_JBL] + * *Definition* = Each of the canals that connects the pericardial cavity with the peritoneal cavity and becomes a pleural cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001498, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = p.42, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = see_Kaufman_MH_and_Bard_JBL ] ## Synonyms - * pericardio-peritoneal channel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001498] + * pericardio-peritoneal channel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001498 ] ## Cross-references @@ -15,7 +15,7 @@ * EHDAA:636 * EMAPA:16282 * SCTID:361428002 - * UMLS:C1283967 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pericardioperitoneal_Canal] + * UMLS:C1283967 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pericardioperitoneal_Canal ] * VHOG:0001498 * ncithesaurus:Pericardioperitoneal_Canal @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006475.md b/md/UBERON/75/UBERON_0006475.md index 3a3293a3f8..d3301ee426 100644 --- a/md/UBERON/75/UBERON_0006475.md +++ b/md/UBERON/75/UBERON_0006475.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006475 * *Label* = Brodmann (1909) area 31 - * *Definition* = Brodmann area 31, also known as dorsal posterior cingulate area 31, is a subdivision of the cytoarchitecturally defined cingulate region of the cerebral cortex. In the human it occupies portions of the posterior cingulate gyrus and medial aspect of the parietal lobe. Approximate boundaries are the cingulate sulcus dorsally and the parieto-occipital sulcus caudally. It partially surrounds the subparietal sulcus, the ventral continuation of the cingulate sulcus in the parietal lobe. Cytoarchitecturally it is bounded rostrally by the ventral anterior cingulate area 24, ventrally by the ventral posterior cingulate area 23, dorsally by the gigantopyramidal area 4 and preparietal area 5 and caudally by the superior parietal area 7 (H) (Brodmann-1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_31] + * *Definition* = Brodmann area 31, also known as dorsal posterior cingulate area 31, is a subdivision of the cytoarchitecturally defined cingulate region of the cerebral cortex. In the human it occupies portions of the posterior cingulate gyrus and medial aspect of the parietal lobe. Approximate boundaries are the cingulate sulcus dorsally and the parieto-occipital sulcus caudally. It partially surrounds the subparietal sulcus, the ventral continuation of the cingulate sulcus in the parietal lobe. Cytoarchitecturally it is bounded rostrally by the ventral anterior cingulate area 24, ventrally by the ventral posterior cingulate area 23, dorsally by the gigantopyramidal area 4 and preparietal area 5 and caudally by the superior parietal area 7 (H) (Brodmann-1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_31 ] ## Synonyms - * B09-31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1765] - * BA31 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1765] - * Brodmann area 31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68628] - * Brodmann area 31, dorsal posterior cingulate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1765] - * Brodmann's area 31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68628] - * area 31 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68628] - * area 31 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1765] - * area cingularis posterior dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1765] - * area cingularis posterior dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_31[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cinguloparietal transition area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68628] - * dorsal posterior cingulate area 31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68628] - * B09-31 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1765[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1765 ] + * BA31 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1765 ] + * Brodmann area 31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68628 ] + * Brodmann area 31, dorsal posterior cingulate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1765 ] + * Brodmann's area 31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68628 ] + * area 31 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68628 ] + * area 31 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1765 ] + * area cingularis posterior dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1765 ] + * area cingularis posterior dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_31, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cinguloparietal transition area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68628 ] + * dorsal posterior cingulate area 31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68628 ] + * B09-31 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1765, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -27,7 +27,7 @@ * NIF_GrossAnatomy:birnlex_1765 * NeuroNames:2415 * SCTID:384785008 - * UMLS:C1272492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1765] + * UMLS:C1272492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1765 ] * Wikipedia:Brodmann_area_31 * http://upload.wikimedia.org/wikipedia/commons/e/ed/Brodmann_Cytoarchitectonics_31.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006575.md b/md/UBERON/75/UBERON_0006575.md index 43d3c08a0f..c2b83baa7d 100644 --- a/md/UBERON/75/UBERON_0006575.md +++ b/md/UBERON/75/UBERON_0006575.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006575 * *Label* = mantle - * *Definition* = A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000825[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wipikedia:Mantle_(mollusc)] + * *Definition* = A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000825, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wipikedia:Mantle_(mollusc) ] ## Synonyms - * mantle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000825] - * pallium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wipikedia:Mantle_(mollusc)] + * mantle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000825 ] + * pallium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wipikedia:Mantle_(mollusc) ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006675.md b/md/UBERON/75/UBERON_0006675.md index 832541c69e..7d2443e0ac 100644 --- a/md/UBERON/75/UBERON_0006675.md +++ b/md/UBERON/75/UBERON_0006675.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006675 * *Label* = venous valve - * *Definition* = A valve that is part of a vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A valve that is part of a vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * valve of vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68095] + * valve of vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68095 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vein](../../UBERON/38/UBERON_0001638.md) and [valve](../../UBERON/78/UBERON_0003978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006775.md b/md/UBERON/75/UBERON_0006775.md index e08efd2387..80f94b7c4b 100644 --- a/md/UBERON/75/UBERON_0006775.md +++ b/md/UBERON/75/UBERON_0006775.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0006875.md b/md/UBERON/75/UBERON_0006875.md index 84e4cbbb89..086ebaa700 100644 --- a/md/UBERON/75/UBERON_0006875.md +++ b/md/UBERON/75/UBERON_0006875.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006875 * *Label* = handplate - * *Definition* = An autopod plate that has_potential_to_develop_into a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An autopod plate that has_potential_to_develop_into a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * EHDAA:4194 * EHDAA:6242 * EMAPA:17245 - * UMLS:C1512334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand_Plate] + * UMLS:C1512334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand_Plate ] * ncithesaurus:Hand_Plate ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod plate](../../UBERON/30/UBERON_0010130.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0007175.md b/md/UBERON/75/UBERON_0007175.md index 04de92aa34..92f8d69fe7 100644 --- a/md/UBERON/75/UBERON_0007175.md +++ b/md/UBERON/75/UBERON_0007175.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007175 * *Label* = inferior angle of scapula - * *Definition* = An angle of the scapula formed by the union of the vertebral and axillary borders; its dorsal surface affords attachment to the Teres major and frequently to a few fibers of the Latissimus dorsi.[WP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_angle_of_scapula] + * *Definition* = An angle of the scapula formed by the union of the vertebral and axillary borders; its dorsal surface affords attachment to the Teres major and frequently to a few fibers of the Latissimus dorsi.[WP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_angle_of_scapula ] ## Synonyms - * angulus inferior (scapula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13315] - * angulus inferior scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_angle_of_scapula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * angulus inferior (scapula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13315 ] + * angulus inferior scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_angle_of_scapula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0007275.md b/md/UBERON/75/UBERON_0007275.md index 8f722dca8c..2b098fe218 100644 --- a/md/UBERON/75/UBERON_0007275.md +++ b/md/UBERON/75/UBERON_0007275.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007275 * *Label* = crista of ampulla of posterior semicircular duct of membranous laybrinth - * *Definition* = A crista ampullaris neuroepithelium that is part of a posterior semicircular duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A crista ampullaris neuroepithelium that is part of a posterior semicircular duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - unvetted ## Synonyms - * caudal crista [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000566] - * posterior crista ampullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000566] - * posterior cristae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000566[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * posterior semicircular canal sensory patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000566] - * posterior semicircular canal sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000566[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * PC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000566] - * posterior crista [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000566] - * sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000566] + * caudal crista [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000566 ] + * posterior crista ampullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000566 ] + * posterior cristae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000566, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * posterior semicircular canal sensory patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000566 ] + * posterior semicircular canal sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000566, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * PC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000566 ] + * posterior crista [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000566 ] + * sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000566 ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crista ampullaris neuroepithelium](../../UBERON/35/UBERON_0006935.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior semicircular duct](../../UBERON/58/UBERON_0001858.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0007375.md b/md/UBERON/75/UBERON_0007375.md index f3a173021a..ca0396005c 100644 --- a/md/UBERON/75/UBERON_0007375.md +++ b/md/UBERON/75/UBERON_0007375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007375 * *Label* = roof of mouth - * *Definition* = A multi-tissue structure consisting of bone and soft tissue that forms a part of the roof of the oral cavity. In mammals this is the combination of the primary palate (premaxilla) and the secondary palate. In early tetrapods it consists of the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A multi-tissue structure consisting of bone and soft tissue that forms a part of the roof of the oral cavity. In mammals this is the combination of the primary palate (premaxilla) and the secondary palate. In early tetrapods it consists of the vomer, pterygoid, parasphenoid, palatine and ectopterygoid bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: check subclasses to verify if they refer to a multi-tissue structure or a subdivision of the skeleton ## Synonyms @@ -11,7 +11,7 @@ * roof of buccal cavity * roof of oral cavity * palate - * palatum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * palatum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * primary or secondary palate ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0007475.md b/md/UBERON/75/UBERON_0007475.md index b04ea7173d..f7b7a5351d 100644 --- a/md/UBERON/75/UBERON_0007475.md +++ b/md/UBERON/75/UBERON_0007475.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007475 * *Label* = matrix-based tissue - * *Definition* = A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [extracellular matrix](../../GO/12/GO_0031012.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003081 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0007775.md b/md/UBERON/75/UBERON_0007775.md index ec403d9bb4..67c3f6cf37 100644 --- a/md/UBERON/75/UBERON_0007775.md +++ b/md/UBERON/75/UBERON_0007775.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007775 * *Label* = secondary tooth - * *Definition* = Permanent teeth are the second set of teeth formed in humans[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Permanent_teeth] + * *Definition* = Permanent teeth are the second set of teeth formed in humans[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Permanent_teeth ] * *Comment* = GAT in FMA ## Synonyms - * permanent tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55654] - * dentes permanentes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Permanent_teeth[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * permanent tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55654 ] + * dentes permanentes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Permanent_teeth, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:55654 * SCTID:245563006 - * UMLS:C0348070 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Permanent_Tooth] + * UMLS:C0348070 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Permanent_Tooth ] * Wikipedia:Permanent_teeth * http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg * ncithesaurus:Permanent_Tooth @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [part_of](../../BFO/50/BFO_0000050.md) some [secondary dentition](../../UBERON/74/UBERON_0007774.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0008275.md b/md/UBERON/75/UBERON_0008275.md index 39d5ef87c7..3a46d9dd97 100644 --- a/md/UBERON/75/UBERON_0008275.md +++ b/md/UBERON/75/UBERON_0008275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008275 * *Label* = carapace - * *Definition* = Dorsal subdivision of turtle shell, consisting of the animal's ribcage combined with dermal bone[WP, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carapace#Turtles_and_tortoises] + * *Definition* = Dorsal subdivision of turtle shell, consisting of the animal's ribcage combined with dermal bone[WP, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carapace#Turtles_and_tortoises ] * *Comment* = note BTO class is more general ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0008575.md b/md/UBERON/75/UBERON_0008575.md index cd2ffcabdb..eae0c300b8 100644 --- a/md/UBERON/75/UBERON_0008575.md +++ b/md/UBERON/75/UBERON_0008575.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008575 * *Label* = oblique arytenoid - * *Definition* = The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_arytenoid_muscle] + * *Definition* = The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_arytenoid_muscle ] ## Synonyms * arytenoid obliquus - * oblique arytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oblique_arytenoid] + * oblique arytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oblique_arytenoid ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0008775.md b/md/UBERON/75/UBERON_0008775.md index 7b7c1c823f..0e1cbe0fe9 100644 --- a/md/UBERON/75/UBERON_0008775.md +++ b/md/UBERON/75/UBERON_0008775.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008775 * *Label* = proximal epiphysis of fibula - * *Definition* = A proximal epiphysis that is part of a fibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal epiphysis that is part of a fibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * head of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33729] - * proximal end of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33729] - * upper end of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33729] + * head of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33729 ] + * proximal end of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33729 ] + * upper end of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33729 ] ## Cross-references * FMA:33729 * SCTID:182080006 - * UMLS:C0223908 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_of_the_Fibula] + * UMLS:C0223908 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_of_the_Fibula ] * galen:HeadOfFibula * ncithesaurus:Head_of_the_Fibula @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fibula](../../UBERON/46/UBERON_0001446.md) and [proximal epiphysis](../../UBERON/80/UBERON_0004380.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The upper extremity or head of the fibula is of an irregular quadrate form, presenting above a flattened articular surface, directed upward, forward, and medialward, for articulation with a corresponding surface on the lateral condyle of the tibia. On the lateral side is a thick and rough prominence continued behind into a pointed eminence, the apex, which projects upward from the posterior part of the head. The prominence, at its upper and lateral part, gives attachment to the tendon of the Biceps femoris and to the fibular collateral ligament of the knee-joint, the ligament dividing the tendon into two parts. The remaining part of the circumference of the head is rough, for the attachment of muscles and ligaments. It presents in front a tubercle for the origin of the upper and anterior fibers of the Peronus longus, and a surface for the attachment of the anterior ligament of the head; and behind, another tubercle, for the attachment of the posterior ligament of the head and the origin of the upper fibers of the Soleus[Wikipedia:Head_of_fibula]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0008975.md b/md/UBERON/75/UBERON_0008975.md index 25b5790ea4..27bb4d3997 100644 --- a/md/UBERON/75/UBERON_0008975.md +++ b/md/UBERON/75/UBERON_0008975.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008975 * *Label* = shell gland - * *Definition* = Any of various structures that secrete covering material for eggs or egg masses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.answers.com/topic/nidamental-gland] + * *Definition* = Any of various structures that secrete covering material for eggs or egg masses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.answers.com/topic/nidamental-gland ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0009075.md b/md/UBERON/75/UBERON_0009075.md index e2611d75e3..c12f0962f5 100644 --- a/md/UBERON/75/UBERON_0009075.md +++ b/md/UBERON/75/UBERON_0009075.md @@ -7,7 +7,7 @@ ## Synonyms * syrinx organ wall - * wall of syrinx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Syrinx_(bird_anatomy)] + * wall of syrinx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Syrinx_(bird_anatomy) ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [syrinx organ](../../UBERON/74/UBERON_0009074.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0009475.md b/md/UBERON/75/UBERON_0009475.md index 0c837ca491..ba9854680b 100644 --- a/md/UBERON/75/UBERON_0009475.md +++ b/md/UBERON/75/UBERON_0009475.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0009675.md b/md/UBERON/75/UBERON_0009675.md index d609189a72..d657b00d3b 100644 --- a/md/UBERON/75/UBERON_0009675.md +++ b/md/UBERON/75/UBERON_0009675.md @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0009775.md b/md/UBERON/75/UBERON_0009775.md index 99ed6bd811..f2f736a7f9 100644 --- a/md/UBERON/75/UBERON_0009775.md +++ b/md/UBERON/75/UBERON_0009775.md @@ -6,9 +6,9 @@ ## Synonyms - * lateral group of medullary reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72573] - * lateral medullary reticular group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72573] - * lateral reticular formation of the medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72573] + * lateral group of medullary reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72573 ] + * lateral medullary reticular group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72573 ] + * lateral reticular formation of the medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72573 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0009975.md b/md/UBERON/75/UBERON_0009975.md index 2faddbbc6f..4bb562974e 100644 --- a/md/UBERON/75/UBERON_0009975.md +++ b/md/UBERON/75/UBERON_0009975.md @@ -7,7 +7,7 @@ ## Synonyms - * adenohypophysis invagination [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004139] + * adenohypophysis invagination [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004139 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010075.md b/md/UBERON/75/UBERON_0010075.md index 37c93bc52e..7101d678b8 100644 --- a/md/UBERON/75/UBERON_0010075.md +++ b/md/UBERON/75/UBERON_0010075.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010075 * *Label* = sacral neural crest - * *Definition* = One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XB:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/books/NBK10065/] + * *Definition* = One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XB:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/books/NBK10065/ ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010175.md b/md/UBERON/75/UBERON_0010175.md index 546bd903b8..b8fd19cfc7 100644 --- a/md/UBERON/75/UBERON_0010175.md +++ b/md/UBERON/75/UBERON_0010175.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010175 * *Label* = nutrient foramen vein - * *Definition* = a vein or veins draining a bone and emerging from a nutrient foramen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=97392] + * *Definition* = a vein or veins draining a bone and emerging from a nutrient foramen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=97392 ] ## Synonyms - * nutrient vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50780] - * vena nutricia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nutrient vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50780 ] + * vena nutricia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ ## Superclasses * [vein](../../UBERON/38/UBERON_0001638.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) ## Equivalencies @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010375.md b/md/UBERON/75/UBERON_0010375.md index 36283c221f..b4183d2b5e 100644 --- a/md/UBERON/75/UBERON_0010375.md +++ b/md/UBERON/75/UBERON_0010375.md @@ -7,7 +7,7 @@ ## Synonyms - * dorsal pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79793[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * dorsal pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79793, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010575.md b/md/UBERON/75/UBERON_0010575.md index 74674e0979..8f02d309a3 100644 --- a/md/UBERON/75/UBERON_0010575.md +++ b/md/UBERON/75/UBERON_0010575.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010575 * *Label* = manual digit 1 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 1 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 1 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1 mesenchyme](../../UBERON/64/UBERON_0010564.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010675.md b/md/UBERON/75/UBERON_0010675.md index 7180d21fbe..3e25a1ca5b 100644 --- a/md/UBERON/75/UBERON_0010675.md +++ b/md/UBERON/75/UBERON_0010675.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010675 * *Label* = manual digit 1 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 1 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 1 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1 mesenchyme](../../UBERON/64/UBERON_0010564.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0010975.md b/md/UBERON/75/UBERON_0010975.md index c4fe923d24..069c312517 100644 --- a/md/UBERON/75/UBERON_0010975.md +++ b/md/UBERON/75/UBERON_0010975.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011175.md b/md/UBERON/75/UBERON_0011175.md index dfc1e65838..d375a6efb3 100644 --- a/md/UBERON/75/UBERON_0011175.md +++ b/md/UBERON/75/UBERON_0011175.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011175 * *Label* = fusiform nucleus of stria terminalis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218 ] ## Synonyms - * bed nuclei of the stria terminalis, anterior division, fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTfu] - * fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000927] - * bed nuclei of the stria terminalis anterior division fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTfu] - * bed nuclei of the stria terminalis fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTfu] - * bed nuclei of the stria terminals anterior division fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTfu] - * bed nucleus of the stria terminalis fusiform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTfu] - * bed nucleus of the stria terminalis fusiform part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTfu] + * bed nuclei of the stria terminalis, anterior division, fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTfu ] + * fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000927 ] + * bed nuclei of the stria terminalis anterior division fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTfu ] + * bed nuclei of the stria terminalis fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTfu ] + * bed nuclei of the stria terminals anterior division fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTfu ] + * bed nucleus of the stria terminalis fusiform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTfu ] + * bed nucleus of the stria terminalis fusiform part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTfu ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011275.md b/md/UBERON/75/UBERON_0011275.md index 3bd026e56f..553d167e1c 100644 --- a/md/UBERON/75/UBERON_0011275.md +++ b/md/UBERON/75/UBERON_0011275.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011275 * *Label* = nail of manual digit 3 - * *Definition* = A nail that is part of a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 3 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18736] - * middle finger nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54335] - * nail of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54335] - * nail of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54335] - * nail plate of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54335] + * claw of digit 3 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18736 ] + * middle finger nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54335 ] + * nail of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54335 ] + * nail of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54335 ] + * nail plate of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54335 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011375.md b/md/UBERON/75/UBERON_0011375.md index f1109dbf59..bc7942e694 100644 --- a/md/UBERON/75/UBERON_0011375.md +++ b/md/UBERON/75/UBERON_0011375.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011375 * *Label* = skin of prepuce of clitoris - * *Definition* = A zone of skin that is part of a prepuce of clitoris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a prepuce of clitoris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * preputial skin of clitoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:27886] + * preputial skin of clitoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:27886 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [prepuce of clitoris](../../UBERON/99/UBERON_0005299.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011575.md b/md/UBERON/75/UBERON_0011575.md index 7f6b50a2b5..d2d4ca354a 100644 --- a/md/UBERON/75/UBERON_0011575.md +++ b/md/UBERON/75/UBERON_0011575.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011575 * *Label* = styloid process of ulna - * *Definition* = The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_styloid_process] + * *Definition* = The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_styloid_process ] ## Synonyms - * processus styloideus ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus styloideus ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_styloid_process[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ulnar styloid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23628] + * processus styloideus ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus styloideus ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_styloid_process, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ulnar styloid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23628 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011575 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011675.md b/md/UBERON/75/UBERON_0011675.md index 4f136efe6e..cf92faa437 100644 --- a/md/UBERON/75/UBERON_0011675.md +++ b/md/UBERON/75/UBERON_0011675.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011675 * *Label* = perichordal ring - * *Definition* = Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011775.md b/md/UBERON/75/UBERON_0011775.md index d58e917c45..7a74560dc2 100644 --- a/md/UBERON/75/UBERON_0011775.md +++ b/md/UBERON/75/UBERON_0011775.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011775 * *Label* = vagus nerve nucleus - * *Definition* = A cranial nerve nucleus that overlaps a vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cranial nerve nucleus that overlaps a vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * nucleus of Xth nerve * nucleus of vagal X nerve * nucleus of vagal nerve - * nucleus of vagus nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54573] - * tenth cranial nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54573] - * vagal X nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * vagal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * vagus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * nodosal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * nucleus of vagus nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54573 ] + * tenth cranial nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54573 ] + * vagal X nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * vagal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * vagus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * nodosal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -30,19 +30,20 @@ * [cranial nerve nucleus](../../UBERON/26/UBERON_0000126.md) * [hindbrain nucleus](../../UBERON/62/UBERON_0009662.md) * [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [vagus nerve](../../UBERON/59/UBERON_0001759.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) + * [cranial nerve nucleus](../../UBERON/26/UBERON_0000126.md) and [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [vagus nerve](../../UBERON/59/UBERON_0001759.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011875.md b/md/UBERON/75/UBERON_0011875.md index 22640bc12a..41acbe1b28 100644 --- a/md/UBERON/75/UBERON_0011875.md +++ b/md/UBERON/75/UBERON_0011875.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011875 * *Label* = ligament of sternoclavicular joint - * *Definition* = A skeletal ligament that is part of a sternoclavicular joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal ligament that is part of a sternoclavicular joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ligamentum sternoclavicularis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sternoclavicular joint ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63980] + * ligamentum sternoclavicularis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sternoclavicular joint ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63980 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sternoclavicular joint](../../UBERON/69/UBERON_0001469.md) and [skeletal ligament](../../UBERON/46/UBERON_0008846.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0011975.md b/md/UBERON/75/UBERON_0011975.md index 4b121ca2a0..2c4fccdcb6 100644 --- a/md/UBERON/75/UBERON_0011975.md +++ b/md/UBERON/75/UBERON_0011975.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011975 * *Label* = epiphysis of middle phalanx of pes - * *Definition* = An epiphysis that is part of a middle phalanx of pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a middle phalanx of pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of pes](../../UBERON/66/UBERON_0003866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011975 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0012075.md b/md/UBERON/75/UBERON_0012075.md index 1b29f96f2d..f85e0f7a47 100644 --- a/md/UBERON/75/UBERON_0012075.md +++ b/md/UBERON/75/UBERON_0012075.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012075 * *Label* = replacement bone - * *Definition* = Bone that forms as a replacement of another structural tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001628] + * *Definition* = Bone that forms as a replacement of another structural tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001628 ] * *Comment* = This class was introduced to be consistent with the ZFA hierarchy. The corresponding TAO term was obsoleted, and never introduced into VSAO. Note that VSAO does have replacement element. ## Synonyms - * replacement bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001628[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * replacement bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001628, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bone that forms as a replacement of another structural tissue.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0012175.md b/md/UBERON/75/UBERON_0012175.md index 16d4271cc6..0b81b9f9c2 100644 --- a/md/UBERON/75/UBERON_0012175.md +++ b/md/UBERON/75/UBERON_0012175.md @@ -6,8 +6,8 @@ ## Synonyms - * facio-acoustic ganglion complex VII-VIII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16794] - * facio-acoustic VII-VIII ganglion complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000715] + * facio-acoustic ganglion complex VII-VIII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16794 ] + * facio-acoustic VII-VIII ganglion complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000715 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0012275.md b/md/UBERON/75/UBERON_0012275.md index d0ad955446..6efce32690 100644 --- a/md/UBERON/75/UBERON_0012275.md +++ b/md/UBERON/75/UBERON_0012275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012275 * *Label* = meso-epithelium - * *Definition* = Epithelium that derives from the mesoderm. [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Epithelium that derives from the mesoderm. [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) and [epithelium](../../UBERON/83/UBERON_0000483.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012275 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0012375.md b/md/UBERON/75/UBERON_0012375.md index 9cd1130bb2..f1e5fefc06 100644 --- a/md/UBERON/75/UBERON_0012375.md +++ b/md/UBERON/75/UBERON_0012375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012375 * *Label* = subserosa - * *Definition* = a layer of tissue between the muscularis and serosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subserosa] + * *Definition* = a layer of tissue between the muscularis and serosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subserosa ] ## Synonyms @@ -12,7 +12,7 @@ * FMA:45636 * SCTID:2255006 - * UMLS:C0225334 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subserosa] + * UMLS:C0225334 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subserosa ] * Wikipedia:Subserosa * ncithesaurus:Subserosa @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0012475.md b/md/UBERON/75/UBERON_0012475.md index 61c328a695..a2f0acd24e 100644 --- a/md/UBERON/75/UBERON_0012475.md +++ b/md/UBERON/75/UBERON_0012475.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012475 * *Label* = skeleton of pectoral complex - * *Definition* = The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a pectoral complex - i.e. the combination of free limb or fin plus pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * bones of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24139] - * ossa membri superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * pectoral complex skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * set of bones of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24139] - * skeleton of anterior limb/fin and girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24139] + * bones of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24139 ] + * ossa membri superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * pectoral complex skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * set of bones of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24139 ] + * skeleton of anterior limb/fin and girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24139 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0013075.md b/md/UBERON/75/UBERON_0013075.md index 1ce31ba701..7af538f2a9 100644 --- a/md/UBERON/75/UBERON_0013075.md +++ b/md/UBERON/75/UBERON_0013075.md @@ -8,7 +8,7 @@ ## Synonyms * duct of venom gland - * venom duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001855] + * venom duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001855 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [venom gland](../../UBERON/79/UBERON_0011579.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013075 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0013175.md b/md/UBERON/75/UBERON_0013175.md index 887dfaa75e..2bbd1828e8 100644 --- a/md/UBERON/75/UBERON_0013175.md +++ b/md/UBERON/75/UBERON_0013175.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013175 * *Label* = nasal air sac - * *Definition* = An air sac opening into the passage of the blowhole that is hypothesized to be involved in echolocation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] + * *Definition* = An air sac opening into the passage of the blowhole that is hypothesized to be involved in echolocation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html ] * *Comment* = May be positioned distally or frontally ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013175 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0013475.md b/md/UBERON/75/UBERON_0013475.md index f5bdfd35e3..39969dd450 100644 --- a/md/UBERON/75/UBERON_0013475.md +++ b/md/UBERON/75/UBERON_0013475.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013475 * *Label* = gustatory gland - * *Definition* = A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Von_Ebner's_gland] + * *Definition* = A serous salivary gland which resides adjacent to the moats surrounding the circumvallate papillae in the posterior one-third of the tongue, anterior to the terminal sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Von_Ebner's_gland ] ## Synonyms - * von Ebner gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Von_Ebner's_gland] - * von Ebner's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Von_Ebner's_gland] + * von Ebner gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Von_Ebner's_gland ] + * von Ebner's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Von_Ebner's_gland ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0013675.md b/md/UBERON/75/UBERON_0013675.md index eee8aaf6af..031f9ff638 100644 --- a/md/UBERON/75/UBERON_0013675.md +++ b/md/UBERON/75/UBERON_0013675.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013675 * *Label* = toxactinium - * *Definition* = A long curved projection from the anterior end of the priapium in some Phallostethidae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/17293/toxactinium] + * *Definition* = A long curved projection from the anterior end of the priapium in some Phallostethidae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/17293/toxactinium ] ## Synonyms - * toxactinia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * toxactinia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0014375.md b/md/UBERON/75/UBERON_0014375.md index 7558fdf15e..6d0440ccab 100644 --- a/md/UBERON/75/UBERON_0014375.md +++ b/md/UBERON/75/UBERON_0014375.md @@ -7,7 +7,7 @@ ## Synonyms * intrinsic hand muscle - * intrinsic muscle of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42380] + * intrinsic muscle of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42380 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_42372 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014375 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0014475.md b/md/UBERON/75/UBERON_0014475.md index 983c4f19d0..b2e33307d5 100644 --- a/md/UBERON/75/UBERON_0014475.md +++ b/md/UBERON/75/UBERON_0014475.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014475 * *Label* = endostylar duct - * *Definition* = A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15592682] + * *Definition* = A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15592682 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [endostyle](../../UBERON/70/UBERON_0006870.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014475 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0014675.md b/md/UBERON/75/UBERON_0014675.md index 9ea3f25747..515763187b 100644 --- a/md/UBERON/75/UBERON_0014675.md +++ b/md/UBERON/75/UBERON_0014675.md @@ -6,9 +6,9 @@ ## Synonyms - * distal interphalangeal joint of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35393] - * distal interphalangeal joint of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35393] - * distal interphalangeal joint of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35393] + * distal interphalangeal joint of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35393 ] + * distal interphalangeal joint of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35393 ] + * distal interphalangeal joint of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35393 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014675 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0014775.md b/md/UBERON/75/UBERON_0014775.md index 1dd8470541..77284278db 100644 --- a/md/UBERON/75/UBERON_0014775.md +++ b/md/UBERON/75/UBERON_0014775.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromere](../../UBERON/31/UBERON_0004731.md) and [part_of](../../BFO/50/BFO_0000050.md) some [future forebrain](../../UBERON/40/UBERON_0006240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014775 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_0014875.md b/md/UBERON/75/UBERON_0014875.md index b0158c0f64..577c8fbfc5 100644 --- a/md/UBERON/75/UBERON_0014875.md +++ b/md/UBERON/75/UBERON_0014875.md @@ -6,11 +6,11 @@ ## Synonyms - * distal end of distal phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33106] - * distal epiphysis of distal phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33106] - * head of distal phalanx of fifth digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33106] - * head of distal phalanx of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33106] - * head of distal phalanx of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33106] + * distal end of distal phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33106 ] + * distal epiphysis of distal phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33106 ] + * head of distal phalanx of fifth digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33106 ] + * head of distal phalanx of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33106 ] + * head of distal phalanx of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33106 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pedal digit 5](../../UBERON/19/UBERON_0004319.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014875 + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2000175.md b/md/UBERON/75/UBERON_2000175.md index 56dc5c71dc..36de8418c5 100644 --- a/md/UBERON/75/UBERON_2000175.md +++ b/md/UBERON/75/UBERON_2000175.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000175 * *Label* = posterior lateral line nerve - * *Definition* = Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * caudal lateral line nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000175] + * caudal lateral line nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000175 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2000375.md b/md/UBERON/75/UBERON_2000375.md index 2221b287aa..060f259171 100644 --- a/md/UBERON/75/UBERON_2000375.md +++ b/md/UBERON/75/UBERON_2000375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000375 * *Label* = anal fin actinotrichium - * *Definition* = Actinotrichium that is part of the anal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the anal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal fin](../../UBERON/63/UBERON_4000163.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2000475.md b/md/UBERON/75/UBERON_2000475.md index 12b804fd80..bd4d92b516 100644 --- a/md/UBERON/75/UBERON_2000475.md +++ b/md/UBERON/75/UBERON_2000475.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2000775.md b/md/UBERON/75/UBERON_2000775.md index 356fcbd6ba..47eb34dc34 100644 --- a/md/UBERON/75/UBERON_2000775.md +++ b/md/UBERON/75/UBERON_2000775.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000775 * *Label* = hypaxial region somite 30 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2000975.md b/md/UBERON/75/UBERON_2000975.md index 91ac78e5d6..877c54319b 100644 --- a/md/UBERON/75/UBERON_2000975.md +++ b/md/UBERON/75/UBERON_2000975.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000975 * *Label* = somite 13 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 13 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001275.md b/md/UBERON/75/UBERON_2001275.md index 6373619a21..f862825372 100644 --- a/md/UBERON/75/UBERON_2001275.md +++ b/md/UBERON/75/UBERON_2001275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001275 * *Label* = sublingual - * *Definition* = Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:je] + * *Definition* = Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:je ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001475.md b/md/UBERON/75/UBERON_2001475.md index 4a04fa4117..bc8ae98374 100644 --- a/md/UBERON/75/UBERON_2001475.md +++ b/md/UBERON/75/UBERON_2001475.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001475 * *Label* = sublingual dorsal ossification - * *Definition* = Sublingual that is the dorsal element paired with the sublingual ventral ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sublingual that is the dorsal element paired with the sublingual ventral ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001675.md b/md/UBERON/75/UBERON_2001675.md index f55298d71b..e0decb93b0 100644 --- a/md/UBERON/75/UBERON_2001675.md +++ b/md/UBERON/75/UBERON_2001675.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001675 * *Label* = mesethmoid cornu - * *Definition* = Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms - * cornu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001675] - * cornua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001675[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * cornuae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001675[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * cornu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001675 ] + * cornua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001675, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * cornuae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001675, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001775.md b/md/UBERON/75/UBERON_2001775.md index 206470eef8..0f30f02d6a 100644 --- a/md/UBERON/75/UBERON_2001775.md +++ b/md/UBERON/75/UBERON_2001775.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001875.md b/md/UBERON/75/UBERON_2001875.md index 49607e503e..828aa148f8 100644 --- a/md/UBERON/75/UBERON_2001875.md +++ b/md/UBERON/75/UBERON_2001875.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2001975.md b/md/UBERON/75/UBERON_2001975.md index b67afcb7be..49869b5333 100644 --- a/md/UBERON/75/UBERON_2001975.md +++ b/md/UBERON/75/UBERON_2001975.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2002075.md b/md/UBERON/75/UBERON_2002075.md index 9af7686d1c..b081fe971e 100644 --- a/md/UBERON/75/UBERON_2002075.md +++ b/md/UBERON/75/UBERON_2002075.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002075 * *Label* = distal cartilage of external anterior process of basipterygium - * *Definition* = Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2002175.md b/md/UBERON/75/UBERON_2002175.md index 58d123cf39..1ac2a32def 100644 --- a/md/UBERON/75/UBERON_2002175.md +++ b/md/UBERON/75/UBERON_2002175.md @@ -6,8 +6,8 @@ ## Synonyms - * ROLE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002175] - * rostral cranial nerve VIII motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002175] + * ROLE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002175 ] + * rostral cranial nerve VIII motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002175 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2002275.md b/md/UBERON/75/UBERON_2002275.md index 69c122e199..bc884ccb78 100644 --- a/md/UBERON/75/UBERON_2002275.md +++ b/md/UBERON/75/UBERON_2002275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002275 * *Label* = Jakubowski's organ - * *Definition* = Anatomical cluster that includes the terminal supraorbital neuromast(s) contained in the nasal bone and innervated by the buccal nerve, contact between the nasal bone and lacrimal, and contact between the supraorbital and infraorbital canals. (Johnson and Patterson 1993). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that includes the terminal supraorbital neuromast(s) contained in the nasal bone and innervated by the buccal nerve, contact between the nasal bone and lacrimal, and contact between the supraorbital and infraorbital canals. (Johnson and Patterson 1993). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2005075.md b/md/UBERON/75/UBERON_2005075.md index 8d3e3bb05f..75deeba58e 100644 --- a/md/UBERON/75/UBERON_2005075.md +++ b/md/UBERON/75/UBERON_2005075.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005075 * *Label* = peripheral cardiac conduction system - * *Definition* = Portion of the cardiac conduction system, with rapid impulse propagation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the cardiac conduction system, with rapid impulse propagation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2005175.md b/md/UBERON/75/UBERON_2005175.md index 13ba70bf34..acf4fc0d64 100644 --- a/md/UBERON/75/UBERON_2005175.md +++ b/md/UBERON/75/UBERON_2005175.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005175 * *Label* = obsolete CoPA - * *Definition* = An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-010807-17[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-274[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-649] + * *Definition* = An interneuron in the spinal cord. CoPA are bipolar with "T" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-010807-17, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-274, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-649 ] * *Comment* = This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. incorrectly generalized to teleosts ## Synonyms - * primary commissural interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005175] + * primary commissural interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005175 ] ## Cross-references @@ -29,8 +29,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/75/UBERON_2005275.md b/md/UBERON/75/UBERON_2005275.md index 3fde3d91a6..daa0c0a33d 100644 --- a/md/UBERON/75/UBERON_2005275.md +++ b/md/UBERON/75/UBERON_2005275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005275 * *Label* = hyomandibular foramen - * *Definition* = Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-192] + * *Definition* = Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-192 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T07:39:00Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2005375.md b/md/UBERON/75/UBERON_2005375.md index 42c5cf0b12..ae94f14bf1 100644 --- a/md/UBERON/75/UBERON_2005375.md +++ b/md/UBERON/75/UBERON_2005375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005375 * *Label* = dorsal fin distal radial bone 4 - * *Definition* = dorsal fin distal radial 4 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 4 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 4](../../UBERON/75/UBERON_2105375.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2105375.md b/md/UBERON/75/UBERON_2105375.md index 8c5d17f0f6..3516f0c95a 100644 --- a/md/UBERON/75/UBERON_2105375.md +++ b/md/UBERON/75/UBERON_2105375.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 4](../../UBERON/67/UBERON_2005367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_2205375.md b/md/UBERON/75/UBERON_2205375.md index fc06cf1f18..11bf9a311d 100644 --- a/md/UBERON/75/UBERON_2205375.md +++ b/md/UBERON/75/UBERON_2205375.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205375 * *Label* = dorsal fin distal radial cartilage 4 - * *Definition* = dorsal fin distal radial 4 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 4 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 4](../../UBERON/75/UBERON_2105375.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3000375.md b/md/UBERON/75/UBERON_3000375.md index 6b3b861736..a7a6d95c95 100644 --- a/md/UBERON/75/UBERON_3000375.md +++ b/md/UBERON/75/UBERON_3000375.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3000475.md b/md/UBERON/75/UBERON_3000475.md index b8e436583d..b7c2cb9759 100644 --- a/md/UBERON/75/UBERON_3000475.md +++ b/md/UBERON/75/UBERON_3000475.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3000775.md b/md/UBERON/75/UBERON_3000775.md index f35ed8a9d7..f92e92b55c 100644 --- a/md/UBERON/75/UBERON_3000775.md +++ b/md/UBERON/75/UBERON_3000775.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000775 * *Label* = obsolete ilial corpus - * *Definition* = Posterior body of the ilium that forms the anterior half of the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior body of the ilium that forms the anterior half of the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0010747 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/75/UBERON_3000875.md b/md/UBERON/75/UBERON_3000875.md index 436282bc61..2fe13c16c8 100644 --- a/md/UBERON/75/UBERON_3000875.md +++ b/md/UBERON/75/UBERON_3000875.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000875 * *Label* = spina pelvis posterior - * *Definition* = Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3010075.md b/md/UBERON/75/UBERON_3010075.md index 5a540806c3..86cc120783 100644 --- a/md/UBERON/75/UBERON_3010075.md +++ b/md/UBERON/75/UBERON_3010075.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3010175.md b/md/UBERON/75/UBERON_3010175.md index cbddf63b6f..3a0c6ba9e5 100644 --- a/md/UBERON/75/UBERON_3010175.md +++ b/md/UBERON/75/UBERON_3010175.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_3010275.md b/md/UBERON/75/UBERON_3010275.md index 4c5328c975..e4ed908691 100644 --- a/md/UBERON/75/UBERON_3010275.md +++ b/md/UBERON/75/UBERON_3010275.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010275 * *Label* = obsolete obsolete single cell organism - * *Definition* = Cell that is an individual member of a species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Cell that is an individual member of a species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] * *Comment* = TO DO: replace with new CARO term. ## Synonyms @@ -27,8 +27,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/75/UBERON_3010675.md b/md/UBERON/75/UBERON_3010675.md index 0cce09a2d8..dc24aba18f 100644 --- a/md/UBERON/75/UBERON_3010675.md +++ b/md/UBERON/75/UBERON_3010675.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010675 * *Label* = bony nodule - * *Definition* = Endochondral element distal to terminal phalanx of hind digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Endochondral element distal to terminal phalanx of hind digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_4000175.md b/md/UBERON/75/UBERON_4000175.md index 4b0699acfd..895375a247 100644 --- a/md/UBERON/75/UBERON_4000175.md +++ b/md/UBERON/75/UBERON_4000175.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000175 * *Label* = pectoral fin lepidotrichium - * *Definition* = Lepidotrichium that is part of the pectoral fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Lepidotrichium that is part of the pectoral fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] * *Comment* = Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. ## Synonyms - * pectoral fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000175[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * pectoral fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000175] + * pectoral fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000175, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * pectoral fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000175 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) ## Other Logical Axioms @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_4200075.md b/md/UBERON/75/UBERON_4200075.md index 868b6f6ef3..3e1bce1502 100644 --- a/md/UBERON/75/UBERON_4200075.md +++ b/md/UBERON/75/UBERON_4200075.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/75/UBERON_4200175.md b/md/UBERON/75/UBERON_4200175.md index 9e025c0bc0..6bdaa38988 100644 --- a/md/UBERON/75/UBERON_4200175.md +++ b/md/UBERON/75/UBERON_4200175.md @@ -26,7 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0000076.md b/md/UBERON/76/UBERON_0000076.md index c9a6d6deb8..2d5eeaec1f 100644 --- a/md/UBERON/76/UBERON_0000076.md +++ b/md/UBERON/76/UBERON_0000076.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000076 * *Label* = external ectoderm - * *Definition* = the surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] + * *Definition* = the surface (external) layer of ectoderm which begins to proliferate shortly after separation from the neuroectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] * *Comment* = Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube). Development notes: (or external ectoderm) forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis ## Synonyms @@ -22,7 +22,7 @@ * EHDAA:7860 * EMAPA:16096 * FMA:87656 - * UMLS:C1515087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Surface_Ectoderm] + * UMLS:C1515087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Surface_Ectoderm ] * Wikipedia:External_ectoderm * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png * ncithesaurus:Surface_Ectoderm @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0000176.md b/md/UBERON/76/UBERON_0000176.md index 137b5bb87a..d821f21903 100644 --- a/md/UBERON/76/UBERON_0000176.md +++ b/md/UBERON/76/UBERON_0000176.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000176 * *Label* = oronasal secretion - * *Definition* = Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000035] + * *Definition* = Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000035 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0000376.md b/md/UBERON/76/UBERON_0000376.md index d03079832c..2732a9f7e5 100644 --- a/md/UBERON/76/UBERON_0000376.md +++ b/md/UBERON/76/UBERON_0000376.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000376 * *Label* = hindlimb stylopod - * *Definition* = In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thigh] + * *Definition* = In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thigh ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here ## Synonyms - * hind limb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb stylopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000349] - * hind propodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000887] - * hindlimb propodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000887] - * hindlimb stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb stylopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24967] - * stylopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stylopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb stylopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000349 ] + * hind propodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000887 ] + * hindlimb propodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000887 ] + * hindlimb stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb stylopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24967 ] + * stylopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stylopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * stylopod of lower limb * thigh - * upper leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000052[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thigh[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * upper leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000052, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thigh, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,7 +42,7 @@ * MESH:A01.378.610.750 * OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA * SCTID:302544002 - * UMLS:C0039866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thigh] + * UMLS:C0039866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thigh ] * VHOG:0000349 * Wikipedia:Thigh * galen:Thigh @@ -63,7 +63,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [stylopod](../../UBERON/72/UBERON_0002472.md) ## Other Logical Axioms @@ -73,8 +73,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the forearm corresponding to the humerus.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0000476.md b/md/UBERON/76/UBERON_0000476.md index 34a0ed2db8..b9f1eeda70 100644 --- a/md/UBERON/76/UBERON_0000476.md +++ b/md/UBERON/76/UBERON_0000476.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000476 * *Label* = acellular anatomical structure - * *Definition* = Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or tissue.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0000976.md b/md/UBERON/76/UBERON_0000976.md index 57c43ec6e2..3d0b9f4bf6 100644 --- a/md/UBERON/76/UBERON_0000976.md +++ b/md/UBERON/76/UBERON_0000976.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000976 * *Label* = humerus - * *Definition* = Paired endochondral long bone that extends between the pectoral girdle and the skeletal parts of the forelimb. [PHENOSCAPE:mah] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000679[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = Paired endochondral long bone that extends between the pectoral girdle and the skeletal parts of the forelimb. [PHENOSCAPE:mah] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000679, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] * *Comment* = homologous to proximal metapterygial mesomere of pectoral appendage [Hall 2007] ## Synonyms - * humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * humerus bone ## Cross-references @@ -23,7 +23,7 @@ * MA:0001356 * MESH:A02.835.232.087.412 * SCTID:181923006 - * UMLS:C0020164 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Humerus] + * UMLS:C0020164 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Humerus ] * VHOG:0001158 * Wikipedia:Humerus * XAO:0003210 @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [humerus endochondral element](../../UBERON/53/UBERON_0015053.md) ## Other Logical Axioms @@ -61,8 +61,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = humeral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001076.md b/md/UBERON/76/UBERON_0001076.md index 2e1b82e956..b5058b7af7 100644 --- a/md/UBERON/76/UBERON_0001076.md +++ b/md/UBERON/76/UBERON_0001076.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001076 * *Label* = neural spine - * *Definition* = The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinous_process] + * *Definition* = The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinous_process ] * *Comment* = Editor notes: todo - reconcile AAO def: "Small, posteriorly directed process at the posterior margin of each neural arch lamina; it is not a neural spine." [AAO:0000739] ## Synonyms - * neuracanthe@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001336] + * neuracanthe@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001336 ] * processus spinosus * processus spinosus vertebrae - * spinous process of vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11948[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * vertebra spinous process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001455] - * pine neurale@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001336] + * spinous process of vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11948, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * vertebra spinous process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001455 ] + * pine neurale@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001336 ] * spinous process * neural spine @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon).[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small, posteriorly directed process at the posterior margin of each neural arch lamina; it is not a neural spine.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of mid-dorsal keel (AAO:0000735)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001176.md b/md/UBERON/76/UBERON_0001176.md index 3d9a2d92f9..a046a7a0bf 100644 --- a/md/UBERON/76/UBERON_0001176.md +++ b/md/UBERON/76/UBERON_0001176.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001176 * *Label* = right hepatic duct - * *Definition* = The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medterms.com/script/main/art.asp?articlekey=26034] + * *Definition* = The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medterms.com/script/main/art.asp?articlekey=26034 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * ductus hepaticus dexter [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus hepaticus dexter [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:14669 * MA:0001639 * SCTID:245401008 - * UMLS:C0227557 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Hepatic_Duct] + * UMLS:C0227557 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Hepatic_Duct ] * VHOG:0000217 * ncithesaurus:Right_Hepatic_Duct @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [right lobe of liver](../../UBERON/14/UBERON_0001114.md) and [extrahepatic bile duct](../../UBERON/03/UBERON_0003703.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The duct which drains bile from the right half of the liver and unites with the left hepatic duct to form the common hepatic duct. [adapted_from_http://www.medterms.com/script/main/art.asp?articlekey=26032][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001276.md b/md/UBERON/76/UBERON_0001276.md index 2982043b2a..92cdf8b2c7 100644 --- a/md/UBERON/76/UBERON_0001276.md +++ b/md/UBERON/76/UBERON_0001276.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001276 * *Label* = epithelium of stomach - * *Definition* = the epithelial layer of the stomach . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000471] + * *Definition* = the epithelial layer of the stomach . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000471 ] * *Comment* = in FMA this is classified as simple columnar, MA divides this into squamous and glandular ## Synonyms - * epithelial tissue of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000500] + * epithelial tissue of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000500 ] ## Cross-references @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001376.md b/md/UBERON/76/UBERON_0001376.md index 15cc9f4050..04a6daf526 100644 --- a/md/UBERON/76/UBERON_0001376.md +++ b/md/UBERON/76/UBERON_0001376.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001376 * *Label* = tensor fasciae latae muscle - * *Definition* = The tensor fasciae latae or tensor fasci lat is a muscle of the thigh. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_fasciae_latae_muscle] + * *Definition* = The tensor fasciae latae or tensor fasci lat is a muscle of the thigh. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_fasciae_latae_muscle ] ## Synonyms - * musculus tensor fasciae latae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22423[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus tensor fasciae latae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_fasciae_latae_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tensor fasciae lata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002391] + * musculus tensor fasciae latae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22423, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus tensor fasciae latae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_fasciae_latae_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tensor fasciae lata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002391 ] * tensor fasciae lata muscle - * tensor fasciae latae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22423] + * tensor fasciae latae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22423 ] * tensor of fascia lata ## Cross-references @@ -19,7 +19,7 @@ * FMA:22423 * MA:0002391 * SCTID:181671009 - * UMLS:C1384497 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tensor_Fasciae_Lata] + * UMLS:C1384497 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tensor_Fasciae_Lata ] * Wikipedia:Tensor_fasciae_latae_muscle * http://upload.wikimedia.org/wikipedia/commons/b/bf/Anatomical_dissection5.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001476.md b/md/UBERON/76/UBERON_0001476.md index c7d260442a..261c7d6dd0 100644 --- a/md/UBERON/76/UBERON_0001476.md +++ b/md/UBERON/76/UBERON_0001476.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001476 * *Label* = deltoid - * *Definition* = A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] + * *Definition* = A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] * *Comment* = We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'. Kardong: Dorsal group ## Synonyms - * deltoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] - * m. deltoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010716] - * musculus deltoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] - * common shoulder muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] - * deltoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] - * deltoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle] - * musculus deltoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * deltoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] + * m. deltoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010716 ] + * musculus deltoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] + * common shoulder muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] + * deltoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] + * deltoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle ] + * musculus deltoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0002286 * OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA * SCTID:181620007 - * UMLS:C0224234 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Deltoid] + * UMLS:C0224234 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Deltoid ] * VHOG:0000846 * Wikipedia:Deltoid_muscle * http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png @@ -57,7 +57,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [attaches_to](../../RO/71/RO_0002371.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [attaches_to](../../RO/71/RO_0002371.md) some [scapula](../../UBERON/49/UBERON_0006849.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001576.md b/md/UBERON/76/UBERON_0001576.md index b3f0bfd546..0542a403bb 100644 --- a/md/UBERON/76/UBERON_0001576.md +++ b/md/UBERON/76/UBERON_0001576.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001576 * *Label* = intrinsic muscle of tongue - * *Definition* = The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop] + * *Definition* = The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.feedexp.org/wiki/Mammalian_Muscle_Ontology_Workshop ] * *Comment* = The main function of the intrinsic muscles is to provide shape. They are not involved with changing the position of the tongue and are not attached to bone[WP] ## Synonyms @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to_part_of](../../core#attaches/of/core#attaches_to_part_of.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [innervated_by](../../RO/05/RO_0002005.md) some [hypoglossal nerve](../../UBERON/50/UBERON_0001650.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001676.md b/md/UBERON/76/UBERON_0001676.md index f3a3023d12..0f3dc9d833 100644 --- a/md/UBERON/76/UBERON_0001676.md +++ b/md/UBERON/76/UBERON_0001676.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001676 * *Label* = occipital bone - * *Definition* = A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_bone] + * *Definition* = A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_bone ] * *Comment* = Taxon notes: fusion of basi-, exo- and supra-occipitals (and maybe tabular)[Kardong]. Development notes: formed from the sclerotome of the occipital somites[PMID:11523816]. It is not present in living or fossil agnathans or cartilaginous fishes, but appears to have arisen in parallel in many bony fishes. Incorporation of the occipital ver- tebrae into the skull was associated with the an- nexation of the upper part of the spinal cord into the brain, together with the first 2 spinal nerves as cranial nerves XI and XII[PMID:11523816] ## Synonyms - * occipital complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/braincase/occiput.html] + * occipital complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/braincase/occiput.html ] * occipital squama - * os occipitale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Occipital_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os occipitale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Occipital_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A02.835.232.781.572 * OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA * SCTID:181796003 - * UMLS:C0028784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Occipital_Bone] + * UMLS:C0028784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Occipital_Bone ] * Wikipedia:Occipital_bone * http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png @@ -37,8 +37,8 @@ * [neurocranium bone](../../UBERON/64/UBERON_0011164.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neurocranium](../../UBERON/03/UBERON_0001703.md) * [part_of](../../BFO/50/BFO_0000050.md) some [occipital region](../../UBERON/02/UBERON_0005902.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [chondrocranium](../../UBERON/41/UBERON_0002241.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [develops from](../../RO/02/RO_0002202.md) some [sclerotome](../../UBERON/89/UBERON_0003089.md) ## Equivalencies @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001776.md b/md/UBERON/76/UBERON_0001776.md index 590e9146de..9cb007b93a 100644 --- a/md/UBERON/76/UBERON_0001776.md +++ b/md/UBERON/76/UBERON_0001776.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001776 * *Label* = optic choroid - * *Definition* = vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid] + * *Definition* = vascular layer containing connective tissue, of the eye lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid ] * *Comment* = check choroid vs choroid layer; check ZFA/TAO placement - no homology assertion in VHOG. Note this is entirely in the posterior region of eyeball in ZFA ## Synonyms - * choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000263] - * choroid coat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid] - * choroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid] - * eye choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001568] - * posterior uvea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uvea#Regions] - * chorioid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001829] - * choroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * optic choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005229] + * choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000263 ] + * choroid coat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid ] + * choroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid ] + * eye choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001568 ] + * posterior uvea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uvea#Regions ] + * chorioid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001829 ] + * choroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * optic choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005229 ] ## Cross-references @@ -29,7 +29,7 @@ * MESH:A09.371.894.223 * SCTID:181172003 * TAO:0005229 - * UMLS:C0008520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid] + * UMLS:C0008520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid ] * VHOG:0001568 * Wikipedia:Choroid * ZFA:0005229 @@ -46,7 +46,7 @@ * [vasculature of eye](../../UBERON/03/UBERON_0002203.md) * [part_of](../../BFO/50/BFO_0000050.md) some [uvea](../../UBERON/68/UBERON_0001768.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [posterior segment of eyeball](../../UBERON/02/UBERON_0001802.md) * [adjacent to](../../RO/20/RO_0002220.md) some [retina](../../UBERON/66/UBERON_0000966.md) * [adjacent to](../../RO/20/RO_0002220.md) some [sclera](../../UBERON/73/UBERON_0001773.md) * [adjacent to](../../RO/20/RO_0002220.md) some [anterior uvea](../../UBERON/92/UBERON_0011892.md) @@ -61,8 +61,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = choroidal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001876.md b/md/UBERON/76/UBERON_0001876.md index 7f848e2d00..748269d65c 100644 --- a/md/UBERON/76/UBERON_0001876.md +++ b/md/UBERON/76/UBERON_0001876.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001876 * *Label* = amygdala - * *Definition* = Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1241] + * *Definition* = Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1241 ] * *Comment* = AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype ## Synonyms * amygdaloid body - * amygdaloid complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1241] + * amygdaloid complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1241 ] * amygdaloid nuclear complex * amygdaloid nuclear groups * archistriatum * amygdaloid area - * amygdaloid nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001042] - * amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61841] - * corpus amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:237[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * corpus amygdaloideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001042] - * corpus amygdaloideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Amygdala[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001042] + * amygdaloid nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001042 ] + * amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61841 ] + * corpus amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:237, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * corpus amygdaloideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001042 ] + * corpus amygdaloideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Amygdala, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001042 ] ## Cross-references @@ -42,11 +42,11 @@ * MESH:A08.186.211.577.090 * MIAA:0000289 * NIF_GrossAnatomy:birnlex_1241 - * NeuroNames:237 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1241] + * NeuroNames:237 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1241 ] * OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA * SCTID:279404004 - * UMLS:C0002708 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1241] - * UMLS:C0002708 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Amygdala] + * UMLS:C0002708 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1241 ] + * UMLS:C0002708 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Amygdala ] * VHOG:0001277 * Wikipedia:Amygdala * http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png @@ -78,8 +78,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = One part of the striatum is called the archistriatum. (...) The archistriatum of fishes consists of several indistinctly segregated nuclei called the amygdaloid (...) complex. Tetrapods retain the structure, and in mammals the corresponding amygdala is a globular mass that tends to be ventral to the other basal nuclei.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = amygdalar * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0001976.md b/md/UBERON/76/UBERON_0001976.md index 6c3fdf218a..1b0b1a8122 100644 --- a/md/UBERON/76/UBERON_0001976.md +++ b/md/UBERON/76/UBERON_0001976.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001976 * *Label* = epithelium of esophagus - * *Definition* = An epithelium that is part of a esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar ## Synonyms - * epithelial tissue of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * esophageal epithelium - * esophagus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * esophagus epithelium - * gullet epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gullet epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * oesophagus epithelium ## Cross-references @@ -31,7 +31,7 @@ * FMA:63063 * MA:0001565 * TAO:0001499 - * UMLS:C1179544 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Epithelium] + * UMLS:C1179544 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Epithelium ] * ZFA:0001499 * ncithesaurus:Esophageal_Epithelium @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Simple columnar epithelium that lines the esophagus. Chen et al, 2007.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002076.md b/md/UBERON/76/UBERON_0002076.md index 7d78c59b52..811c481a85 100644 --- a/md/UBERON/76/UBERON_0002076.md +++ b/md/UBERON/76/UBERON_0002076.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002176.md b/md/UBERON/76/UBERON_0002176.md index c7d0d9fc16..0fef0480f4 100644 --- a/md/UBERON/76/UBERON_0002176.md +++ b/md/UBERON/76/UBERON_0002176.md @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002276.md b/md/UBERON/76/UBERON_0002276.md index 962b31c093..cea32ecef9 100644 --- a/md/UBERON/76/UBERON_0002276.md +++ b/md/UBERON/76/UBERON_0002276.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002276 * *Label* = lamina of spiral limbus - * *Definition* = The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus lamin spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limbus_laminae_spiralis] + * *Definition* = The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus lamin spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limbus_laminae_spiralis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * limbus lamina spiralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001191] - * limbus laminae spiralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77721] + * limbus lamina spiralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001191 ] + * limbus laminae spiralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77721 ] * limbus laminae spiralis osseae - * spiral limbus lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77721] + * spiral limbus lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77721 ] * spiral limbus ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002376.md b/md/UBERON/76/UBERON_0002376.md index 7b50493f8e..14310121c5 100644 --- a/md/UBERON/76/UBERON_0002376.md +++ b/md/UBERON/76/UBERON_0002376.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002376 * *Label* = muscle of head - * *Definition* = Any muscle that is part of a head[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any muscle that is part of a head[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = defined generically so could in theory encompass FBbt:00003260 'skeletal muscle of head', but we restrict this to vertebrates. Skeletal muscles of the head originate from the non-segmented head mesoderm (Noden, 1983; Wachtler et al., 1984) ## Synonyms - * adult head muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cephalic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001652] + * adult head muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cephalic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001652 ] * cephalic musculature - * head muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000578] - * head muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * head muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000578 ] + * head muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * musculus caput - * cranial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001652] + * cranial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001652 ] * head muscles ## Cross-references @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003899 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002476.md b/md/UBERON/76/UBERON_0002476.md index 553088ecde..0f972b6e27 100644 --- a/md/UBERON/76/UBERON_0002476.md +++ b/md/UBERON/76/UBERON_0002476.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002476 * *Label* = lateral globus pallidus - * *Definition* = The more lateral of the two segments of the globus pallidus, abutting the putamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] + * *Definition* = The more lateral of the two segments of the globus pallidus, abutting the putamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] ## Synonyms * external globus pallidus - * external pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] - * external part of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] - * globus pallidus extermal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] - * globus pallidus external segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61839[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002767[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] + * external pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] + * external part of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] + * globus pallidus extermal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] + * globus pallidus external segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61839, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002767, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] * globus pallidus externus - * globus pallidus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002247] + * globus pallidus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002247 ] * globus pallidus, lateral segment * lateral pallidal segment - * lateral pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] + * lateral pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] * lateral part of globus pallidus - * lateral segment of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1610] - * pallidus II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61839] - * pars lateralis globi pallidi medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61839[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Pallidum dorsal region external segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GPe] - * globus pallidus (rat) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * globus pallidus lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GPl] - * globus pallidus lateral segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002767] - * globus pallidus, external segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232] - * globus pallidus, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232] - * globus pallidus, pars externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral division of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232] - * lateral segment of the globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232] - * nucleus lateralis globi pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:232[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pallidum I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002247] + * lateral segment of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1610 ] + * pallidus II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61839 ] + * pars lateralis globi pallidi medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61839, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Pallidum dorsal region external segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GPe ] + * globus pallidus (rat) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * globus pallidus lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GPl ] + * globus pallidus lateral segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002767 ] + * globus pallidus, external segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232 ] + * globus pallidus, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232 ] + * globus pallidus, pars externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral division of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232 ] + * lateral segment of the globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232 ] + * nucleus lateralis globi pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:232, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pallidum I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002247 ] ## Cross-references @@ -45,9 +45,9 @@ * FMA:61839 * MA:0002767 * NIF_GrossAnatomy:birnlex_1610 - * NeuroNames:232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1610] + * NeuroNames:232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1610 ] * SCTID:361560008 - * UMLS:C0262267 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1610] + * UMLS:C0262267 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1610 ] * Wikipedia:Lateral_globus_pallidus * http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif @@ -70,8 +70,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted][Wikipedia:Lateral_globus_pallidus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002576.md b/md/UBERON/76/UBERON_0002576.md index 78a577d9f1..f2f56e5ff5 100644 --- a/md/UBERON/76/UBERON_0002576.md +++ b/md/UBERON/76/UBERON_0002576.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002576 * *Label* = temporal pole - * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_pole] + * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_pole ] ## Synonyms - * polus temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:126[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * temporal pole, cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:126] - * temporopolar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1055] + * polus temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:126, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * temporal pole, cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:126 ] + * temporopolar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1055 ] ## Cross-references @@ -17,7 +17,7 @@ * BAMS:tmp * FMA:74890 * NIF_GrossAnatomy:birnlex_1055 - * NeuroNames:126 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1055] + * NeuroNames:126 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1055 ] * SCTID:314155002 * Wikipedia:Temporal_pole * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [temporal lobe](../../UBERON/71/UBERON_0001871.md) and [pole of cerebral hemisphere](../../UBERON/99/UBERON_0009899.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002676.md b/md/UBERON/76/UBERON_0002676.md index dc34f3e23e..8246dd4dcc 100644 --- a/md/UBERON/76/UBERON_0002676.md +++ b/md/UBERON/76/UBERON_0002676.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002676 * *Label* = ventral supraoptic decussation - * *Definition* = The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_supraoptic_decussation] + * *Definition* = The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_supraoptic_decussation ] ## Synonyms - * Gudden commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] - * Gudden's commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] - * VSOX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1347] - * commissura supraoptica ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissure of Gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1347] - * supraoptic commissures, ventral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] - * ventral supra-optic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] - * ventral supraoptic commissure (of Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1347] - * ventral supraoptic decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1347] - * von Gudden's commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] - * vsox [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1347[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * commissura supraoptica ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_supraoptic_decussation[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * supraoptic commissures, ventral (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:389] - * ventral supraoptic decussation of gudden [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62052] + * Gudden commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] + * Gudden's commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] + * VSOX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1347 ] + * commissura supraoptica ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissure of Gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1347 ] + * supraoptic commissures, ventral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] + * ventral supra-optic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] + * ventral supraoptic commissure (of Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1347 ] + * ventral supraoptic decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1347 ] + * von Gudden's commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] + * vsox [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1347, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * commissura supraoptica ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_supraoptic_decussation, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * supraoptic commissures, ventral (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:389 ] + * ventral supraoptic decussation of gudden [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62052 ] ## Cross-references @@ -28,8 +28,8 @@ * BAMS:vsox * FMA:62052 * NIF_GrossAnatomy:birnlex_1347 - * NeuroNames:389 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1347] - * UMLS:C0175339 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1347] + * NeuroNames:389 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1347 ] + * UMLS:C0175339 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1347 ] * Wikipedia:Ventral_supraoptic_decussation * http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002776.md b/md/UBERON/76/UBERON_0002776.md index c77bbdc61a..fc477af9fb 100644 --- a/md/UBERON/76/UBERON_0002776.md +++ b/md/UBERON/76/UBERON_0002776.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002776 * *Label* = ventral nuclear group - * *Definition* = Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = Nuclei in the ventral part of the thalamus, involved in modulating activity of dorsal thalamic nuclei. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] * *Comment* = AO notes: consider splitting nucleus from nuclear group (FMA has 'nucleus of subthalamus') - but note this is also treated as a nucleus (singular) in FMA. ZFA:0005576 represents an individual nucleus within the group ## Synonyms - * nuclei ventrales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1669] - * ventral group of dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1669] - * ventral nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62022] - * ventral nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62022] - * ventral nuclear mass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62022] - * ventral nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62022] - * ventral tier thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62022] - * VNG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1669[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * ventral dorsal thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VENT] - * ventral group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VENT] - * ventral thalamus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005576] + * nuclei ventrales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1669 ] + * ventral group of dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1669 ] + * ventral nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62022 ] + * ventral nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62022 ] + * ventral nuclear mass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62022 ] + * ventral nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62022 ] + * ventral tier thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62022 ] + * VNG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1669, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * ventral dorsal thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VENT ] + * ventral group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VENT ] + * ventral thalamus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005576 ] ## Cross-references @@ -29,9 +29,9 @@ * EV:0100206 * FMA:62022 * NIF_GrossAnatomy:birnlex_1669 - * NeuroNames:333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1669] + * NeuroNames:333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1669 ] * SCTID:279125005 - * UMLS:C0228333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1669] + * UMLS:C0228333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1669 ] * Wikipedia:Ventral_nuclear_group * ZFA:0005576 * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png @@ -55,8 +55,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted][Wikipedia:Ventral_nuclear_group]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002876.md b/md/UBERON/76/UBERON_0002876.md index acd241d2cc..b9a8e7bc3f 100644 --- a/md/UBERON/76/UBERON_0002876.md +++ b/md/UBERON/76/UBERON_0002876.md @@ -7,16 +7,16 @@ ## Synonyms - * intercalated nucleus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72597] - * nucleus intercalatus of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72597] + * intercalated nucleus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72597 ] + * nucleus intercalatus of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72597 ] * nucleus of staderini - * nucleus staderini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2651] - * nucleus staderini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2654] - * In [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2654[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * intercalated nucleus of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759] - * nucleus intercalates [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NIS] - * nucleus intercalatus (Staderini) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus intercalatus (Staderini) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:759] + * nucleus staderini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2651 ] + * nucleus staderini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2654 ] + * In [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2654, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * intercalated nucleus of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759 ] + * nucleus intercalates [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NIS ] + * nucleus intercalatus (Staderini) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759 ] + * nucleus intercalatus (Staderini) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:759, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,13 +26,13 @@ * FMA:72597 * NIF_GrossAnatomy:birnlex_2651 * NIF_GrossAnatomy:birnlex_2654 - * NeuroNames:759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2651] - * NeuroNames:759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2654] + * NeuroNames:759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2651 ] + * NeuroNames:759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2654 ] * SCTID:369077004 - * UMLS:C0152398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2651] - * UMLS:C0152398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2654] - * UMLS:C1289504 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2651] - * UMLS:C1289504 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2654] + * UMLS:C0152398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2651 ] + * UMLS:C0152398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2654 ] + * UMLS:C1289504 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2651 ] + * UMLS:C1289504 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2654 ] ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002878 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0002976.md b/md/UBERON/76/UBERON_0002976.md index 2fce354bdb..cba2a4c262 100644 --- a/md/UBERON/76/UBERON_0002976.md +++ b/md/UBERON/76/UBERON_0002976.md @@ -6,16 +6,16 @@ ## Synonyms - * preolivary nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72474] - * nucleus preolivaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:573[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * preolivary nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72474 ] + * nucleus preolivaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:573, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PrO * FMA:72474 * NIF_GrossAnatomy:birnlex_814 - * NeuroNames:573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_814] - * UMLS:C0175431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_814] + * NeuroNames:573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_814 ] + * UMLS:C0175431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_814 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003076.md b/md/UBERON/76/UBERON_0003076.md index b206c36f1d..c1bb09e909 100644 --- a/md/UBERON/76/UBERON_0003076.md +++ b/md/UBERON/76/UBERON_0003076.md @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003176.md b/md/UBERON/76/UBERON_0003176.md index 98bf1e280d..2106fd3101 100644 --- a/md/UBERON/76/UBERON_0003176.md +++ b/md/UBERON/76/UBERON_0003176.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004585 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000120 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003176 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_0003276.md b/md/UBERON/76/UBERON_0003276.md index 6041f3cfac..f1da7215fa 100644 --- a/md/UBERON/76/UBERON_0003276.md +++ b/md/UBERON/76/UBERON_0003276.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003276 * *Label* = skeleton of embryo - * *Definition* = A skeletal system that is part of a embryo [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal system that is part of a embryo [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * developmental tissue set of all bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * developmental tissue set of bones of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * developmental tissue skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * developmental tissue skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * developmental tissue skeleton system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo set of all bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo set of bones of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * embryo skeleton system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of all bones of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of all bones of embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of bones of body of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of bones of body of embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal system of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal system of embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeleton of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeleton system of developmental tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeleton system of embryo [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * developmental tissue set of all bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * developmental tissue set of bones of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * developmental tissue skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * developmental tissue skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * developmental tissue skeleton system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo set of all bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo set of bones of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * embryo skeleton system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of all bones of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of all bones of embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of bones of body of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of bones of body of embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal system of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal system of embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeleton of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeleton system of developmental tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeleton system of embryo [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) and [skeletal system](../../UBERON/34/UBERON_0001434.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003476.md b/md/UBERON/76/UBERON_0003476.md index 2ed8722d49..ead74056ff 100644 --- a/md/UBERON/76/UBERON_0003476.md +++ b/md/UBERON/76/UBERON_0003476.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003476 * *Label* = respiratory system venous blood vessel - * *Definition* = A vein that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003576.md b/md/UBERON/76/UBERON_0003576.md index cb3403c278..7678534c2c 100644 --- a/md/UBERON/76/UBERON_0003576.md +++ b/md/UBERON/76/UBERON_0003576.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003576 * *Label* = hip connective tissue - * *Definition* = A portion of connective tissue that is part of a hip [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a hip [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hip textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio coxae textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hip region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of regio coxae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hip textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio coxae textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hip region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of regio coxae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hip](../../UBERON/64/UBERON_0001464.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003676.md b/md/UBERON/76/UBERON_0003676.md index cda85ac1ba..de31591cb9 100644 --- a/md/UBERON/76/UBERON_0003676.md +++ b/md/UBERON/76/UBERON_0003676.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003676 * *Label* = patellar ligament - * *Definition* = The central portion of the common tendon of the quadriceps femoris. It is attached to the apex of the PATELLA and to the lower part of the tubercle of the TIBIA. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.513.514.475[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Patellar_ligament] + * *Definition* = The central portion of the common tendon of the quadriceps femoris. It is attached to the apex of the PATELLA and to the lower part of the tubercle of the TIBIA. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.513.514.475, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Patellar_ligament ] ## Synonyms - * central band of tendon of quadriceps femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44581] - * ligamentum patella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44581] + * central band of tendon of quadriceps femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44581 ] + * ligamentum patella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44581 ] * patellar tendon ## Cross-references @@ -19,7 +19,7 @@ * GAID:128 * MESH:A02.513.514.475 * SCTID:244639004 - * UMLS:C0206332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Patellar_Ligament] + * UMLS:C0206332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Patellar_Ligament ] * Wikipedia:Patellar_ligament * galen:LigamentumPatellae * ncithesaurus:Patellar_Ligament @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003876.md b/md/UBERON/76/UBERON_0003876.md index e32de824c5..2fc8ad24ac 100644 --- a/md/UBERON/76/UBERON_0003876.md +++ b/md/UBERON/76/UBERON_0003876.md @@ -7,10 +7,10 @@ ## Synonyms - * hippocampus subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74041] + * hippocampus subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74041 ] * subdivision of hippocampus - * hippocampal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:HIP] - * hippocampus region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002428] + * hippocampal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:HIP ] + * hippocampus region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002428 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0003976.md b/md/UBERON/76/UBERON_0003976.md index f707f08904..7c40e4b005 100644 --- a/md/UBERON/76/UBERON_0003976.md +++ b/md/UBERON/76/UBERON_0003976.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003976 * *Label* = saccule duct - * *Definition* = the saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009259] + * *Definition* = the saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009259 ] ## Synonyms - * saccular duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009259] + * saccular duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009259 ] * saccular part of utriculosaccular duct ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004076.md b/md/UBERON/76/UBERON_0004076.md index 5ca68462b4..3b23ec2e20 100644 --- a/md/UBERON/76/UBERON_0004076.md +++ b/md/UBERON/76/UBERON_0004076.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004076 * *Label* = cerebellum vermis lobule III - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009990] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009990 ] * *Comment* = II or III? ## Synonyms - * lobule III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CENT3] + * lobule III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CENT3 ] * lobule III of cerebellum vermis - * vermic lobule III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081226] - * central lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001000] + * vermic lobule III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081226 ] + * central lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001000 ] * central lobule of cerebellum ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004176.md b/md/UBERON/76/UBERON_0004176.md index 882a2690ee..af8a557329 100644 --- a/md/UBERON/76/UBERON_0004176.md +++ b/md/UBERON/76/UBERON_0004176.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004176 * *Label* = external genitalia - * *Definition* = The external genitalia are the outer sex organs, such as the penis or vulva in mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035261] + * *Definition* = The external genitalia are the outer sex organs, such as the penis or vulva in mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035261 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004276.md b/md/UBERON/76/UBERON_0004276.md index a40be51fae..3598d2acf0 100644 --- a/md/UBERON/76/UBERON_0004276.md +++ b/md/UBERON/76/UBERON_0004276.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004276 * *Label* = fourth ventricle choroid plexus epithelium - * *Definition* = A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus epithelium that is part of a fourth ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chorioid plexus of cerebral hemisphere epithelium of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelial tissue of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * choroid plexus epithelium of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of choroid plexus of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of choroid plexus of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle chorioid plexus of cerebral hemisphere epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle choroid plexus epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle epithelial tissue of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle epithelium of chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fourth ventricle epithelium of choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chorioid plexus of cerebral hemisphere epithelium of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelial tissue of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * choroid plexus epithelium of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of choroid plexus of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of choroid plexus of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle chorioid plexus of cerebral hemisphere epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle choroid plexus epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle epithelial tissue of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle epithelium of chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fourth ventricle epithelium of choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:242823 * MA:0000984 - * UMLS:C1707392 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle] + * UMLS:C1707392 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle ] * ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle ## Subsets @@ -43,15 +43,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus epithelium](../../UBERON/11/UBERON_0003911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004376.md b/md/UBERON/76/UBERON_0004376.md index b8a108b217..115a20cd73 100644 --- a/md/UBERON/76/UBERON_0004376.md +++ b/md/UBERON/76/UBERON_0004376.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004376 * *Label* = fin bone - * *Definition* = A bone that is part of a fin [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bone that is part of a fin [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fin](../../UBERON/97/UBERON_0008897.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004476.md b/md/UBERON/76/UBERON_0004476.md index f84142d21b..d974a8cb04 100644 --- a/md/UBERON/76/UBERON_0004476.md +++ b/md/UBERON/76/UBERON_0004476.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004476 * *Label* = musculature of shoulder - * *Definition* = Any collection of muscles that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50220] - * set of muscles of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50220] + * muscle group of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50220 ] + * set of muscles of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50220 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004676.md b/md/UBERON/76/UBERON_0004676.md index 0bcee4a3d6..7c3d58a4f8 100644 --- a/md/UBERON/76/UBERON_0004676.md +++ b/md/UBERON/76/UBERON_0004676.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004676 * *Label* = spinal cord lateral horn - * *Definition* = a triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_horn_of_spinal_cord] + * *Definition* = a triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_horn_of_spinal_cord ] * *Comment* = todo - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep ## Synonyms - * intermediate gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256536] - * intermediate grey column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256536] - * lateral gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256536] - * lateral gray horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2666] - * lateral gray matter of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256536] - * lateral horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256536] - * spinal cord intermediate horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2666] - * spinal cord lateral horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2666] - * cornu laterale medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_horn_of_spinal_cord[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intermediate gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256536 ] + * intermediate grey column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256536 ] + * lateral gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256536 ] + * lateral gray horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2666 ] + * lateral gray matter of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256536 ] + * lateral horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256536 ] + * spinal cord intermediate horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2666 ] + * spinal cord lateral horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2666 ] + * cornu laterale medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_horn_of_spinal_cord, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:256536 * MA:0001118 * NIF_GrossAnatomy:birnlex_2666 - * UMLS:C0228567 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2666] - * UMLS:C0228582 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Horn_of_the_Spinal_Cord] + * UMLS:C0228567 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2666 ] + * UMLS:C0228582 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Horn_of_the_Spinal_Cord ] * Wikipedia:Lateral_horn_of_spinal_cord * http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png * ncithesaurus:Lateral_Horn_of_the_Spinal_Cord @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004776.md b/md/UBERON/76/UBERON_0004776.md index 732cc0fcd0..1db77a5a01 100644 --- a/md/UBERON/76/UBERON_0004776.md +++ b/md/UBERON/76/UBERON_0004776.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004776 * *Label* = inner renal medulla vasa recta - * *Definition* = A vasa recta that is part of a inner medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasa recta that is part of a inner medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * inner medulla of kidney vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of medulla of kidney vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inner zone of renal medulla vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * set of inner region of renal pyramids vasa recta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of inner medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of inner renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of inner zone of medulla of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of inner zone of renal medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasa recta of set of inner region of renal pyramids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * inner medulla of kidney vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of medulla of kidney vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inner zone of renal medulla vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * set of inner region of renal pyramids vasa recta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of inner medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of inner renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of inner zone of medulla of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of inner zone of renal medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasa recta of set of inner region of renal pyramids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [inner medulla of kidney](../../UBERON/94/UBERON_0001294.md) and [vasa recta](../../UBERON/26/UBERON_0004726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0004876.md b/md/UBERON/76/UBERON_0004876.md index 9feaa303a9..5a3b021fdd 100644 --- a/md/UBERON/76/UBERON_0004876.md +++ b/md/UBERON/76/UBERON_0004876.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004876 * *Label* = urogenital ridge - * *Definition* = One of of the pair of folds derived from the cloacal folds which give rise to a portion of the external genitalia; in male embryos they close over the urethral plate and fuse to form the spongy (penile) urethra and ventral aspect of the penis, not including the glans; failure of fusion of the urethral folds leads to hypospadias; in female embryos they fuse only anterior to the anus and form the labia minora[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011835[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urogenital_folds] + * *Definition* = One of of the pair of folds derived from the cloacal folds which give rise to a portion of the external genitalia; in male embryos they close over the urethral plate and fuse to form the spongy (penile) urethra and ventral aspect of the penis, not including the glans; failure of fusion of the urethral folds leads to hypospadias; in female embryos they fuse only anterior to the anus and form the labia minora[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011835, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urogenital_folds ] * *Comment* = Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP] ## Synonyms * urethral fold - * urogenital fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004022] + * urogenital fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004022 ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:30888 * EMAPA:30899 * SCTID:308801004 - * UMLS:C0231047 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urogenital_Ridge] + * UMLS:C0231047 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urogenital_Ridge ] * Wikipedia:Urogenital_folds * ncithesaurus:Urogenital_Ridge @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005076.md b/md/UBERON/76/UBERON_0005076.md index 809848bc3c..870c1a8a89 100644 --- a/md/UBERON/76/UBERON_0005076.md +++ b/md/UBERON/76/UBERON_0005076.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005076 * *Label* = hindbrain-spinal cord boundary - * *Definition* = An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [adjacent to](../../RO/20/RO_0002220.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005176.md b/md/UBERON/76/UBERON_0005176.md index c9ab62dcbc..08ec40616d 100644 --- a/md/UBERON/76/UBERON_0005176.md +++ b/md/UBERON/76/UBERON_0005176.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005176 * *Label* = tooth enamel organ - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Enamel_organ[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Enamel_organ, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726 ] * *Comment* = Editor notes: some sources treat the dental organ as epithelium - we treat it as the mereological sum of dentail epithelium plus dental papilla (consistent with treatment in many AOs), but this may be revised.Development notes: NOT develeops_from NC[UBERONREF:0000002]. Alternate definitioon: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the odontogenic papilla. Historically, enamel organ has been the term to describe this structure, but it was attempted unsuccessfully in recent years to change the name to dental organ in order to better represent its multiple functions apart from enamel formation[WP] ## Synonyms - * dental organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005138] - * enamel organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010747] + * dental organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005138 ] + * enamel organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010747 ] * odontogenic organ - * organum enameleum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Enamel_organ[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * organum enameleum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Enamel_organ, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005276.md b/md/UBERON/76/UBERON_0005276.md index 529a3c7a21..9d0153e6cf 100644 --- a/md/UBERON/76/UBERON_0005276.md +++ b/md/UBERON/76/UBERON_0005276.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005276 * *Label* = dorsal skin of finger - * *Definition* = A dorsal skin of digit that is part of a manual digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal skin of digit that is part of a manual digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = this class is explicitly the union of the two FMA classes ## Synonyms * dorsal finger skin - * skin of dorsal part of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38320] - * subdivision of skin of dorsal part of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60346] + * skin of dorsal part of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38320 ] + * subdivision of skin of dorsal part of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60346 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal skin of digit](../../UBERON/75/UBERON_0005275.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005376.md b/md/UBERON/76/UBERON_0005376.md index c5ee39d51a..b805fd3577 100644 --- a/md/UBERON/76/UBERON_0005376.md +++ b/md/UBERON/76/UBERON_0005376.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005376 * *Label* = olfactory bulb external plexiform layer - * *Definition* = Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090403] + * *Definition* = Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090403 ] ## Synonyms - * olfactory bulb main external plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090403] - * external plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001319] - * EPL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001319[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * external plexiform layer of the olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:EPl] + * olfactory bulb main external plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090403 ] + * external plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001319 ] + * EPL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001319, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * external plexiform layer of the olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:EPl ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005476.md b/md/UBERON/76/UBERON_0005476.md index b304c9522e..bc4e800483 100644 --- a/md/UBERON/76/UBERON_0005476.md +++ b/md/UBERON/76/UBERON_0005476.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005476 * *Label* = spinal nerve trunk - * *Definition* = A nerve trunk that is part of a spinal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve trunk that is part of a spinal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * spinal nerve (trunk) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5929] - * spinal neural trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5929] - * trunk of spinal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5929] + * spinal nerve (trunk) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5929 ] + * spinal neural trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5929 ] + * trunk of spinal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5929 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve trunk](../../UBERON/64/UBERON_0002464.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal nerve](../../UBERON/80/UBERON_0001780.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005576.md b/md/UBERON/76/UBERON_0005576.md index 6a1fece175..d591c55616 100644 --- a/md/UBERON/76/UBERON_0005576.md +++ b/md/UBERON/76/UBERON_0005576.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005576 * *Label* = rhombomere 4 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000893] - * floor plate rhombomere 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000893] - * floorplate r4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000893] + * floor plate r4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000893 ] + * floor plate rhombomere 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000893 ] + * floorplate r4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000893 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 4](../../UBERON/11/UBERON_0005511.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005676.md b/md/UBERON/76/UBERON_0005676.md index d22d321621..6054463a9e 100644 --- a/md/UBERON/76/UBERON_0005676.md +++ b/md/UBERON/76/UBERON_0005676.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005676 * *Label* = right lung accessory lobe endothelium - * *Definition* = An endothelium that is part of a right lung accessory lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a right lung accessory lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005876.md b/md/UBERON/76/UBERON_0005876.md index 7a1338a1df..c71ffe28f8 100644 --- a/md/UBERON/76/UBERON_0005876.md +++ b/md/UBERON/76/UBERON_0005876.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005876 * *Label* = undifferentiated genital tubercle - * *Definition* = A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Genital_tubercle] + * *Definition* = A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Genital_tubercle ] * *Comment* = Taxon notes: todo - add taxon constraints. AO notes: we assume the EMAPA class is the undifferentiated form based on TS timings ## Synonyms - * undifferentiated genital tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000583] - * genital tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17382] + * undifferentiated genital tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000583 ] + * genital tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17382 ] * phallic tubercle - * tuberculum genitale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Genital_tubercle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuberculum phallicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Genital_tubercle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tuberculum genitale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Genital_tubercle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuberculum phallicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Genital_tubercle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = embryonic anlage of the external genitalia, which emerges as paired swellings ventral to the cloacal membrane, is proposed to be derived from all three germ layers, and gives rise to the penis, clitoris, scrotum, labia, and foreskin; GT development is indistinguishable in male and female mouse embryos until ~E16, when the urethral plate begins to be masculinized to form the penile urethra, marking the beginning of an androgen-dependent phase of sexual differentiation[MP] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammalian embryos, male and female external genitalia develop from the genital tubercle.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0005976.md b/md/UBERON/76/UBERON_0005976.md index 3a5e251bdf..9d0fd496a2 100644 --- a/md/UBERON/76/UBERON_0005976.md +++ b/md/UBERON/76/UBERON_0005976.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005976 * *Label* = ansiform lobule crus I - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010002] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010002 ] * *Comment* = TODO - check ## Synonyms - * crus II of the ansiform lobule (HVII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081209] - * crus primum lobuli ansiformis cerebelli [h vii a] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * first crus of ansiform lobule of cerebellum [h vii a] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] - * hemispheric lobule viibi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081209] - * lobulus ansiform crus II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081209] - * lobulus semilunaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081209] - * lobulus semilunaris superior cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior superior lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] - * semilunar lobule-2 (superior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] - * superior semilunar lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] - * superior semilunar lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] - * superior semilunar lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72524] + * crus II of the ansiform lobule (HVII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081209 ] + * crus primum lobuli ansiformis cerebelli [h vii a] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * first crus of ansiform lobule of cerebellum [h vii a] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] + * hemispheric lobule viibi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081209 ] + * lobulus ansiform crus II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081209 ] + * lobulus semilunaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081209 ] + * lobulus semilunaris superior cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior superior lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] + * semilunar lobule-2 (superior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] + * superior semilunar lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] + * superior semilunar lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] + * superior semilunar lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72524 ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006076.md b/md/UBERON/76/UBERON_0006076.md index a052923c0d..42437820a9 100644 --- a/md/UBERON/76/UBERON_0006076.md +++ b/md/UBERON/76/UBERON_0006076.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006076 * *Label* = caudal region of vertebral column - * *Definition* = Subdivision of vertebral column that corresponds to the caudal subdivision of the body, containing the caudal vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = Subdivision of vertebral column that corresponds to the caudal subdivision of the body, containing the caudal vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] * *Comment* = in AAO, this is posterior to the caudal-sacral region ## Synonyms - * caudal skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] - * caudal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000082] - * postsacral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000082] - * tail region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000082] + * caudal skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] + * caudal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000082 ] + * postsacral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000082 ] + * tail region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000082 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of vertebral column](../../UBERON/77/UBERON_0006077.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [caudal region](../../UBERON/71/UBERON_0006071.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the vertebral column posterior to the caudal-sacral region, that may consists of two or three to more than 100 vertebrae. These vertebrae exhibit a gradual reduction in the sizes of their transverse processes and zygapophyses, but these structures are never entirely absent. All caudal vertebrae bear haemal arches.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006276.md b/md/UBERON/76/UBERON_0006276.md index 40237d40e5..f7b80ce805 100644 --- a/md/UBERON/76/UBERON_0006276.md +++ b/md/UBERON/76/UBERON_0006276.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006376.md b/md/UBERON/76/UBERON_0006376.md index 031aa32c5a..b457c5b597 100644 --- a/md/UBERON/76/UBERON_0006376.md +++ b/md/UBERON/76/UBERON_0006376.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006376 * *Label* = premacula segment of distal straight tubule - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14595018[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14595018, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376 ] ## Synonyms - * distal straight tubule premacula segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002628] - * kidney medulla loop of Henle ascending limb thick segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * medullary thick ascending limb of Henle's loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * renal medulla loop of Henle ascending limb thick segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] - * renal medulla thick ascending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * distal straight tubule premacula segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002628 ] + * kidney medulla loop of Henle ascending limb thick segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * medullary thick ascending limb of Henle's loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * renal medulla loop of Henle ascending limb thick segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] + * renal medulla thick ascending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006476.md b/md/UBERON/76/UBERON_0006476.md index 2163019177..f0e14e96c1 100644 --- a/md/UBERON/76/UBERON_0006476.md +++ b/md/UBERON/76/UBERON_0006476.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006476 * *Label* = Brodmann (1909) area 33 - * *Definition* = Brodmann area 33, also known as pregenual area 33, is a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. It is a narrow band located in the anterior cingulate gyrus adjacent to the supracallosal gyrus in the depth of the callosal sulcus, near the genu of the corpus callosum. Cytoarchitecturally it is bounded by the ventral anterior cingulate area 24 and the supracallosal gyrus (Brodmann-1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_33] + * *Definition* = Brodmann area 33, also known as pregenual area 33, is a subdivision of the cytoarchitecturally defined cingulate region of cerebral cortex. It is a narrow band located in the anterior cingulate gyrus adjacent to the supracallosal gyrus in the depth of the callosal sulcus, near the genu of the corpus callosum. Cytoarchitecturally it is bounded by the ventral anterior cingulate area 24 and the supracallosal gyrus (Brodmann-1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_33 ] ## Synonyms - * B09-33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1766] - * BA33 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1766] - * Brodmann area 33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68630] - * Brodmann area 33, pregenual [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1766] - * Brodmann's area 33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68630] - * area 33 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68630] - * area 33 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1766] - * area praegenualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1766] - * area praegenualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_33[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pregenual area 33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68630] - * B09-33 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1766[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1766 ] + * BA33 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1766 ] + * Brodmann area 33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68630 ] + * Brodmann area 33, pregenual [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1766 ] + * Brodmann's area 33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68630 ] + * area 33 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68630 ] + * area 33 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1766 ] + * area praegenualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1766 ] + * area praegenualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_33, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pregenual area 33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68630 ] + * B09-33 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1766, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:birnlex_1766 * NeuroNames:2423 * SCTID:384788005 - * UMLS:C1272494 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1766] + * UMLS:C1272494 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1766 ] * Wikipedia:Brodmann_area_33 ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006676.md b/md/UBERON/76/UBERON_0006676.md index 59841685cb..a88e5ee924 100644 --- a/md/UBERON/76/UBERON_0006676.md +++ b/md/UBERON/76/UBERON_0006676.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006676 * *Label* = muscularis mucosa - * *Definition* = A the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_mucosae] + * *Definition* = A the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_mucosae ] ## Synonyms - * muscularis mucosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68413] - * lamina muscularis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004839] - * laminar muscularis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscularis_mucosae] + * muscularis mucosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68413 ] + * lamina muscularis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004839 ] + * laminar muscularis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscularis_mucosae ] ## Cross-references * BTO:0004839 * FMA:68413 * SCTID:370140002 - * UMLS:C0225357 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscularis_Mucosa] + * UMLS:C0225357 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscularis_Mucosa ] * Wikipedia:Muscularis_mucosae * galen:MuscularisMucosae * http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1058.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006776.md b/md/UBERON/76/UBERON_0006776.md index 8db95d6253..48d537e5b0 100644 --- a/md/UBERON/76/UBERON_0006776.md +++ b/md/UBERON/76/UBERON_0006776.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006776 * *Label* = annular epiphysis - * *Definition* = secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/epiphysis] + * *Definition* = secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/epiphysis ] * *Comment* = note that here epiphysis means deriving from a separate ossification center ## Synonyms - * anular epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75792] + * anular epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75792 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006876.md b/md/UBERON/76/UBERON_0006876.md index 401cdb8474..028e69b386 100644 --- a/md/UBERON/76/UBERON_0006876.md +++ b/md/UBERON/76/UBERON_0006876.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006876 * *Label* = vasculature of organ - * *Definition* = A vasculature that is part of a organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * organ vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74612] - * set of blood vessels of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74612] + * organ vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74612 ] + * set of blood vessels of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74612 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [organ](../../UBERON/62/UBERON_0000062.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0006976.md b/md/UBERON/76/UBERON_0006976.md index a63d4a2059..d7162aa48e 100644 --- a/md/UBERON/76/UBERON_0006976.md +++ b/md/UBERON/76/UBERON_0006976.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006976 * *Label* = peptonephridium - * *Definition* = Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004280] + * *Definition* = Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004280 ] ## Synonyms - * esophageal appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004280] - * oesophageal appendage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004280] + * esophageal appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004280 ] + * oesophageal appendage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004280 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0007176.md b/md/UBERON/76/UBERON_0007176.md index c9abd9fd8c..105244c8b2 100644 --- a/md/UBERON/76/UBERON_0007176.md +++ b/md/UBERON/76/UBERON_0007176.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007176 * *Label* = superior angle of scapula - * *Definition* = An angle of the scapula formed by the junction of the superior and vertebral borders. It is thin, smooth, rounded, inclined somewhat lateralward, and gives attachment to a few fibers of the Levator scapulae[WP,unvetted] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_angle_of_scapula] + * *Definition* = An angle of the scapula formed by the junction of the superior and vertebral borders. It is thin, smooth, rounded, inclined somewhat lateralward, and gives attachment to a few fibers of the Levator scapulae[WP,unvetted] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_angle_of_scapula ] ## Synonyms - * angulus superior (scapula) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23248] - * angulus superior scapulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_angle_of_scapula[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial angle of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_angle_of_scapula] - * superior medial angle of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_angle_of_scapula] + * angulus superior (scapula) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23248 ] + * angulus superior scapulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_angle_of_scapula, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial angle of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_angle_of_scapula ] + * superior medial angle of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_angle_of_scapula ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0007276.md b/md/UBERON/76/UBERON_0007276.md index 874d096439..1a7cadadbd 100644 --- a/md/UBERON/76/UBERON_0007276.md +++ b/md/UBERON/76/UBERON_0007276.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007276 * *Label* = crista of ampulla of lateral semicircular duct of membranous laybrinth - * *Definition* = A crista ampullaris neuroepithelium that is part of a lateral semicircular duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A crista ampullaris neuroepithelium that is part of a lateral semicircular duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - unvetted ## Synonyms - * lateral crista ampullaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000166] - * lateral cristae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000166[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lateral semicircular canal sensory patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000166] - * lateral semicircular canal sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000166[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * LC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000166] - * lateral crista [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000166] - * sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000166] + * lateral crista ampullaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000166 ] + * lateral cristae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000166, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lateral semicircular canal sensory patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000166 ] + * lateral semicircular canal sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000166, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * LC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000166 ] + * lateral crista [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000166 ] + * sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000166 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crista ampullaris neuroepithelium](../../UBERON/35/UBERON_0006935.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral semicircular duct](../../UBERON/59/UBERON_0001859.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0007376.md b/md/UBERON/76/UBERON_0007376.md index a528599a56..aadf7c383a 100644 --- a/md/UBERON/76/UBERON_0007376.md +++ b/md/UBERON/76/UBERON_0007376.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007376 * *Label* = outer epithelial layer - * *Definition* = The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidermis_(zoology)] + * *Definition* = The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidermis_(zoology) ] * *Comment* = Editor's note: this grouping class exists primarily to align with GO - see GO:0008544. ## Synonyms * outer epidermal layer - * epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0008544] - * hypodermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0008544[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WBbt:0005733[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0008544 ] + * hypodermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0008544, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WBbt:0005733, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [surrounds](../../RO/21/RO_0002221.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0007776.md b/md/UBERON/76/UBERON_0007776.md index 21b123dc6e..3a75ae4150 100644 --- a/md/UBERON/76/UBERON_0007776.md +++ b/md/UBERON/76/UBERON_0007776.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007776 * *Label* = unerupted tooth - * *Definition* = A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.860.715] + * *Definition* = A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.860.715 ] ## Synonyms - * unerupted teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1268] + * unerupted teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1268 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0008276.md b/md/UBERON/76/UBERON_0008276.md index 68eb507097..383eeca68e 100644 --- a/md/UBERON/76/UBERON_0008276.md +++ b/md/UBERON/76/UBERON_0008276.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008276 * *Label* = plastron - * *Definition* = A composite bony plate forming the floor of the shell of a turtle consisting of fused dermal elements, including contributions from the clavicles (epiplastrons) and interclavice (epiplastron). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wikipedia:Turtle_shell#Plastron] + * *Definition* = A composite bony plate forming the floor of the shell of a turtle consisting of fused dermal elements, including contributions from the clavicles (epiplastrons) and interclavice (epiplastron). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wikipedia:Turtle_shell#Plastron ] * *Comment* = note BTO class is more general ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0008576.md b/md/UBERON/76/UBERON_0008576.md index 8a8ee9adaf..8f74d3eda2 100644 --- a/md/UBERON/76/UBERON_0008576.md +++ b/md/UBERON/76/UBERON_0008576.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008576 * *Label* = thyro-arytenoid - * *Definition* = The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] + * *Definition* = The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] ## Synonyms - * thyroarytenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * musculus thyroarytenoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thyreoarytaenoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyreoarytaenoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyreoarytnoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyreoarytnoideus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyreoepiglotticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyro-arytenoid %26 vocalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyro-arytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyroarytenoid muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * thyroarytnoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * ventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] - * ventricularis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroarytenoid_muscle] + * thyroarytenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * musculus thyroarytenoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thyreoarytaenoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyreoarytaenoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyreoarytnoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyreoarytnoideus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyreoepiglotticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyro-arytenoid %26 vocalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyro-arytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyroarytenoid muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * thyroarytnoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * ventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] + * ventricularis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroarytenoid_muscle ] ## Cross-references * FMA:46588 * SCTID:361814004 - * UMLS:C0224183 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroarytenoid_Muscle] + * UMLS:C0224183 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroarytenoid_Muscle ] * Wikipedia:Thyroarytenoid_muscle * http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png * ncithesaurus:Thyroarytenoid_Muscle @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0008776.md b/md/UBERON/76/UBERON_0008776.md index 21ce754328..5d4e137f8b 100644 --- a/md/UBERON/76/UBERON_0008776.md +++ b/md/UBERON/76/UBERON_0008776.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008776 * *Label* = inner cell mass derived hypoblast - * *Definition* = A thin monolayer of small cuboidal cells that make up the lower layer of the bilaminar embryonic disc, beneath the epiblast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011183] + * *Definition* = A thin monolayer of small cuboidal cells that make up the lower layer of the bilaminar embryonic disc, beneath the epiblast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011183 ] * *Comment* = This layer can be distinguished from the overlying epiblast in the mouse embryo as early as day 4.5, and day 7 in human). The cells of the hypoblast are not thought to contribute to the developing embryo proper, but contribute to several extraembryonic structures. In rodents, the hypoblast cells form the parietal endoderm, parietal and visceral yolk sac as well as extraembryonic membranes, such as the extraembryonic endoderm, the yolk sac and the stalk that links it to the endodermal digestive tube. In human embryos, hypoblast cells migrate and line the blastocoelic cavity of the blastocyst, forming the primary yolk sac and Heuser's membrane. Although both the murine parietal yolk sac and the human primary yolk sac are transient structures, they are not developmental equivalents. A second wave of hypoblast cells migrates to form the definitive yolk sac which displaces the primary yolk sac and is equivalent to the murine visceral yolk sac. The primary yolk sac breaks up into small vesicles that can persist at the mural (abembryonic) pole.[MP:0011183] ## Synonyms - * primitive endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011185] - * hypoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0090008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001222[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * primary endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011185] - * proximal endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16051] - * visceral endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * primitive endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011185 ] + * hypoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0090008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001222, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * primary endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011185 ] + * proximal endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16051 ] + * visceral endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] ## Cross-references @@ -47,8 +47,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000417 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003225 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003226 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0008876.md b/md/UBERON/76/UBERON_0008876.md index a097df6620..def7656911 100644 --- a/md/UBERON/76/UBERON_0008876.md +++ b/md/UBERON/76/UBERON_0008876.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008876 * *Label* = hypodermis skeletal muscle layer - * *Definition* = the skeletal muscle layer in the superficial fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011157] + * *Definition* = the skeletal muscle layer in the superficial fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011157 ] * *Comment* = Consider merging with UBERON:0010934 ## Synonyms - * hypodermal muscle layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011157] - * hypodermis muscle layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011157] - * panniculus carnosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011157] + * hypodermal muscle layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011157 ] + * hypodermis muscle layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011157 ] + * panniculus carnosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011157 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypodermis](../../UBERON/72/UBERON_0002072.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0008976.md b/md/UBERON/76/UBERON_0008976.md index 8625565103..38dbed08cd 100644 --- a/md/UBERON/76/UBERON_0008976.md +++ b/md/UBERON/76/UBERON_0008976.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008976 * *Label* = snake venom gland - * *Definition* = The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001440] + * *Definition* = The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001440 ] * *Comment* = snake venom glands are modified salivary glands. In future this class may be merged into a more general modified salivary gland venom gland class ## Synonyms - * venom gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001440] - * poison gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001440] + * venom gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001440 ] + * poison gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001440 ] * venenosalivary gland ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = venenosalivary - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009076.md b/md/UBERON/76/UBERON_0009076.md index 5953caeda4..182ea5c3e2 100644 --- a/md/UBERON/76/UBERON_0009076.md +++ b/md/UBERON/76/UBERON_0009076.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009476.md b/md/UBERON/76/UBERON_0009476.md index b6ea2c83ea..fe6fe2b51c 100644 --- a/md/UBERON/76/UBERON_0009476.md +++ b/md/UBERON/76/UBERON_0009476.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009476 * *Label* = madreporite - * *Definition* = The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a 'madrepore' colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Madreporite] + * *Definition* = The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a 'madrepore' colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Madreporite ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009576.md b/md/UBERON/76/UBERON_0009576.md index 4302b9745d..cfde5e708b 100644 --- a/md/UBERON/76/UBERON_0009576.md +++ b/md/UBERON/76/UBERON_0009576.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009576 * *Label* = medulla oblongata sulcus limitans - * *Definition* = A sulcus limitans of neural tube that is part of a future medulla oblongata. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sulcus limitans of neural tube that is part of a future medulla oblongata. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) and [sulcus limitans of neural tube](../../UBERON/78/UBERON_0005478.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009676.md b/md/UBERON/76/UBERON_0009676.md index 74942ce19f..f1d1276058 100644 --- a/md/UBERON/76/UBERON_0009676.md +++ b/md/UBERON/76/UBERON_0009676.md @@ -6,7 +6,7 @@ ## Synonyms - * early telencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001981] + * early telencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001981 ] * early telencephalic ventricle ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009776.md b/md/UBERON/76/UBERON_0009776.md index e58d15b7d9..41febf7c90 100644 --- a/md/UBERON/76/UBERON_0009776.md +++ b/md/UBERON/76/UBERON_0009776.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009776 * *Label* = intermediate reticular formation - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0009976.md b/md/UBERON/76/UBERON_0009976.md index 52d1c4ebfd..122860208d 100644 --- a/md/UBERON/76/UBERON_0009976.md +++ b/md/UBERON/76/UBERON_0009976.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009976 * *Label* = hypothalamo-hypophyseal system - * *Definition* = An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypophyseal_portal_system] + * *Definition* = An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypophyseal_portal_system ] * *Comment* = Taxon notes: in lampreys and teleost hormones enter the adenohypophysis by diffusion. Editor notes: we represent this structure strictly as a system of blood vessels (presumably in line with the FMA). It could also be extended to include neurons and fiber tracts, as per the MESH definition. Function notes: One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles[WP] ## Synonyms - * hypophyseal portal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypophyseal_portal_system] - * hypothalamic hypophyseal portal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * hypophyseal portal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypophyseal_portal_system ] + * hypothalamic hypophyseal portal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] * hypothalamohypophyseal portal system - * venae portales hypophysiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypophyseal_portal_system] - * hypothalamo hypophyseal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.407.747.357] - * hypothalamo-hypophyseal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.407.747.357] - * portal veins of hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70860] - * set of portal veins of hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70860] - * venae portales hypophysiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypophyseal_portal_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae portales hypophysiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypophyseal_portal_system ] + * hypothalamo hypophyseal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.407.747.357 ] + * hypothalamo-hypophyseal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.407.747.357 ] + * portal veins of hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70860 ] + * set of portal veins of hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70860 ] + * venae portales hypophysiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypophyseal_portal_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:70860 * MESH:A06.407.747.357 - * UMLS:C1512570 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypothalamohypophyseal_Portal_System] + * UMLS:C1512570 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypothalamohypophyseal_Portal_System ] * Wikipedia:Hypophyseal_portal_system * ncithesaurus:Hypothalamohypophyseal_Portal_System @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010076.md b/md/UBERON/76/UBERON_0010076.md index f2b1c2bd58..cdfcc50c0e 100644 --- a/md/UBERON/76/UBERON_0010076.md +++ b/md/UBERON/76/UBERON_0010076.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010076 * *Label* = network of trabecular spaces in bone tissue - * *Definition* = Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:259332] + * *Definition* = Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:259332 ] ## Synonyms - * trabecular network of bone tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:259332] + * trabecular network of bone tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:259332 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [trabecular network of bone](../../UBERON/67/UBERON_0008867.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010176.md b/md/UBERON/76/UBERON_0010176.md index af21343906..5e40df1f6d 100644 --- a/md/UBERON/76/UBERON_0010176.md +++ b/md/UBERON/76/UBERON_0010176.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010176 * *Label* = nutrient foramen artery - * *Definition* = The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nutrient_artery] + * *Definition* = The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nutrient_artery ] ## Synonyms - * nutrient artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50779] - * a. nutricia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nutrient_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * a. nutriens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nutrient_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * aretria nutricia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nutrient artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50779 ] + * a. nutricia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nutrient_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * a. nutriens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nutrient_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * aretria nutricia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50779 * SCTID:337318006 - * UMLS:C0278431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nutrient_Artery] + * UMLS:C0278431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nutrient_Artery ] * Wikipedia:Nutrient_artery * ncithesaurus:Nutrient_Artery @@ -26,7 +26,7 @@ ## Superclasses * [systemic artery](../../UBERON/73/UBERON_0004573.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) ## Equivalencies @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010276.md b/md/UBERON/76/UBERON_0010276.md index 9075162070..00554e8956 100644 --- a/md/UBERON/76/UBERON_0010276.md +++ b/md/UBERON/76/UBERON_0010276.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010276 * *Label* = vertebral column opening - * *Definition* = An anatomical conduit that is part of a vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical conduit that is part of a vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: in AAO this is a space rather than conduit ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical conduit](../../UBERON/11/UBERON_0004111.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010376.md b/md/UBERON/76/UBERON_0010376.md index 9a0db98bb3..a86e6ad0d8 100644 --- a/md/UBERON/76/UBERON_0010376.md +++ b/md/UBERON/76/UBERON_0010376.md @@ -7,7 +7,7 @@ ## Synonyms - * ventral pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79794[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * ventral pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79794, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010576.md b/md/UBERON/76/UBERON_0010576.md index 810cd6315a..5090836407 100644 --- a/md/UBERON/76/UBERON_0010576.md +++ b/md/UBERON/76/UBERON_0010576.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010576 * *Label* = manual digit 2 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 2 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 2 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2 mesenchyme](../../UBERON/92/UBERON_0005692.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0010676.md b/md/UBERON/76/UBERON_0010676.md index 841d1cfcb9..186251a63d 100644 --- a/md/UBERON/76/UBERON_0010676.md +++ b/md/UBERON/76/UBERON_0010676.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010676 * *Label* = manual digit 2 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 2 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 2 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2 mesenchyme](../../UBERON/92/UBERON_0005692.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011176.md b/md/UBERON/76/UBERON_0011176.md index 6d892a7fe5..0a3b7f94ca 100644 --- a/md/UBERON/76/UBERON_0011176.md +++ b/md/UBERON/76/UBERON_0011176.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011176 * *Label* = oval nucleus of stria terminalis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214 ] ## Synonyms - * bed nuclei of the stria terminalis, anterior division, oval nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTov] - * oval nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000929] + * bed nuclei of the stria terminalis, anterior division, oval nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTov ] + * oval nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000929 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011276.md b/md/UBERON/76/UBERON_0011276.md index a845d74029..804da793b8 100644 --- a/md/UBERON/76/UBERON_0011276.md +++ b/md/UBERON/76/UBERON_0011276.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011276 * *Label* = nail of manual digit 4 - * *Definition* = A nail that is part of a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 4 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18737] - * nail of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54338] - * nail of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54338] - * nail plate of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54338] - * ring finger nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54338] + * claw of digit 4 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18737 ] + * nail of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54338 ] + * nail of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54338 ] + * nail plate of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54338 ] + * ring finger nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54338 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011376.md b/md/UBERON/76/UBERON_0011376.md index 9cb89941fb..321bd5f250 100644 --- a/md/UBERON/76/UBERON_0011376.md +++ b/md/UBERON/76/UBERON_0011376.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011376 * *Label* = iliothoracic muscle - * *Definition* = The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://emedicine.medscape.com/article/1899031-overview] + * *Definition* = The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://emedicine.medscape.com/article/1899031-overview ] ## Synonyms - * iliothoracic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002322] + * iliothoracic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002322 ] ## Cross-references * MA:0002322 - * UMLS:C1708463 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliothoracic] + * UMLS:C1708463 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliothoracic ] * ncithesaurus:Iliothoracic ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011576.md b/md/UBERON/76/UBERON_0011576.md index d8cf9e4591..7ae3aa6951 100644 --- a/md/UBERON/76/UBERON_0011576.md +++ b/md/UBERON/76/UBERON_0011576.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011576 * *Label* = supra-orbital ridge - * *Definition* = a bony ridge located above the eye sockets of all primates. In Homo sapiens sapiens (modern humans) the eyebrows are located on their lower margin[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] + * *Definition* = a bony ridge located above the eye sockets of all primates. In Homo sapiens sapiens (modern humans) the eyebrows are located on their lower margin[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] * *Comment* = see also: xref: AAO:0000590 ## Synonyms - * frontal torus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * supraorbital torus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * arcus superciliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eyebrow bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * frontal torus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * margin of the orbit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * margo supraorbitalis (os frontale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53097] + * frontal torus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * supraorbital torus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * arcus superciliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eyebrow bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * frontal torus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * margin of the orbit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * margo supraorbitalis (os frontale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53097 ] * orbital ridge - * superciliary ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * supra-orbital margin of frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53097] - * supraorbital arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * supraorbital margin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] - * supraorbital surface of frontal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57137] - * supraorbital torus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supraorbital_ridge] + * superciliary ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * supra-orbital margin of frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53097 ] + * supraorbital arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * supraorbital margin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] + * supraorbital surface of frontal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57137 ] + * supraorbital torus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supraorbital_ridge ] ## Cross-references * FMA:53097 * FMA:57137 - * UMLS:C2826587 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbital_Ridge] + * UMLS:C2826587 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbital_Ridge ] * Wikipedia:Supraorbital_ridge * ncithesaurus:Orbital_Ridge @@ -51,8 +51,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = Neanderthals have a Supraorbital torus, a prominent, trabecular (spongy) brow ridge. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011576 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011676.md b/md/UBERON/76/UBERON_0011676.md index 08207c5f89..e18c201481 100644 --- a/md/UBERON/76/UBERON_0011676.md +++ b/md/UBERON/76/UBERON_0011676.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011676 * *Label* = subdivision of organism along main body axis - * *Definition* = A major subdivision of an organism that divides an organism along its anterio-posterior axis. In vertebrates, this is based on the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A major subdivision of an organism that divides an organism along its anterio-posterior axis. In vertebrates, this is based on the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: Ideally this would be disjoint with analagous class for appendicular axes, but currently 'appendages' like antennae, horns cause a problem ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011776.md b/md/UBERON/76/UBERON_0011776.md index 2bdc91a205..acb69d6fc3 100644 --- a/md/UBERON/76/UBERON_0011776.md +++ b/md/UBERON/76/UBERON_0011776.md @@ -7,7 +7,7 @@ ## Synonyms - * commissural nucleus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73900] + * commissural nucleus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73900 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011876.md b/md/UBERON/76/UBERON_0011876.md index 66f84aecbb..27a75256e3 100644 --- a/md/UBERON/76/UBERON_0011876.md +++ b/md/UBERON/76/UBERON_0011876.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011876 * *Label* = body of tongue - * *Definition* = the oral part of the tongue anterior to the terminal sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/body-of-tongue.html] + * *Definition* = the oral part of the tongue anterior to the terminal sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/body-of-tongue.html ] ## Synonyms - * corpus linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/body-of-tongue.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tongue body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54641] + * corpus linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/body-of-tongue.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tongue body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54641 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0011976.md b/md/UBERON/76/UBERON_0011976.md index 2a1ba51106..9719303610 100644 --- a/md/UBERON/76/UBERON_0011976.md +++ b/md/UBERON/76/UBERON_0011976.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011976 * *Label* = epiphysis of distal phalanx of pes - * *Definition* = An epiphysis that is part of a distal phalanx of pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a distal phalanx of pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pes](../../UBERON/67/UBERON_0003867.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011976 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0012076.md b/md/UBERON/76/UBERON_0012076.md index b2c96c3ae6..9c8edeabee 100644 --- a/md/UBERON/76/UBERON_0012076.md +++ b/md/UBERON/76/UBERON_0012076.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012076 * *Label* = tibiotalar joint - * *Definition* = A skeletal joint that connects a tibia and connects a talus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that connects a tibia and connects a talus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes - see also FMA:44063 ## Synonyms - * ankle joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] - * talotibial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] - * tibioastragalar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] + * ankle joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] + * talotibial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] + * tibioastragalar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [talus](../../UBERON/95/UBERON_0002395.md) and [connects](../../ts/core#connects.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0012176.md b/md/UBERON/76/UBERON_0012176.md index 5d7204e544..cffcba2501 100644 --- a/md/UBERON/76/UBERON_0012176.md +++ b/md/UBERON/76/UBERON_0012176.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012176 * *Label* = comb - * *Definition* = a vascular, red cutaneous structure attached in a sagittal plane to the dorsum of the skull of domestic fowl. It consists of a base attached to the skull, a central mass called the body, a backward projecting blade and upward projecting points [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/pea+comb] + * *Definition* = a vascular, red cutaneous structure attached in a sagittal plane to the dorsum of the skull of domestic fowl. It consists of a base attached to the skull, a central mass called the body, a backward projecting blade and upward projecting points [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/pea+comb ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0012276.md b/md/UBERON/76/UBERON_0012276.md index f5035e54fc..15176e7412 100644 --- a/md/UBERON/76/UBERON_0012276.md +++ b/md/UBERON/76/UBERON_0012276.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012276 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0012376.md b/md/UBERON/76/UBERON_0012376.md index 513bbfef33..8ad857d4d2 100644 --- a/md/UBERON/76/UBERON_0012376.md +++ b/md/UBERON/76/UBERON_0012376.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012376 * *Label* = retromolar triangle - * *Definition* = The small area behind the wisdom teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retromolar_space[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Retromolar_Trigone] + * *Definition* = The small area behind the wisdom teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retromolar_space, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Retromolar_Trigone ] * *Comment* = Editor notes: requires verification ## Synonyms @@ -16,7 +16,7 @@ * CALOHA:TS-2353 * FMA:75784 * SCTID:245830008 - * UMLS:C0226920 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retromolar_Trigone] + * UMLS:C0226920 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retromolar_Trigone ] * ncithesaurus:Retromolar_Trigone ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0012476.md b/md/UBERON/76/UBERON_0012476.md index 6edddbdff2..ca2b17fb01 100644 --- a/md/UBERON/76/UBERON_0012476.md +++ b/md/UBERON/76/UBERON_0012476.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012476 * *Label* = skeleton of pelvic complex - * *Definition* = The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a pelvic complex - i.e. the combination of free limb or fin plus pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * bones of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24140] - * lower limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24140] - * ossa membri inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * pelvic complex skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * set of bones of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24140] - * skeleton of posterior limb/fin and girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * bones of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24140 ] + * lower limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24140 ] + * ossa membri inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * pelvic complex skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * set of bones of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24140 ] + * skeleton of posterior limb/fin and girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0013076.md b/md/UBERON/76/UBERON_0013076.md index aa3cf28d3b..cdaddc0514 100644 --- a/md/UBERON/76/UBERON_0013076.md +++ b/md/UBERON/76/UBERON_0013076.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013076 * *Label* = snake venom - * *Definition* = Solutions or mixtures of toxic and nontoxic substances elaborated by snake (Ophidia) salivary glands for the purpose of killing prey or disabling predators and delivered by grooved or hollow fangs. They usually contain enzymes, toxins, and other factors. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.965.850[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Snake_venom] + * *Definition* = Solutions or mixtures of toxic and nontoxic substances elaborated by snake (Ophidia) salivary glands for the purpose of killing prey or disabling predators and delivered by grooved or hollow fangs. They usually contain enzymes, toxins, and other factors. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.965.850, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Snake_venom ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [produced_by](../../RO/01/RO_0003001.md) some [snake venom gland](../../UBERON/76/UBERON_0008976.md) and [venom](../../UBERON/13/UBERON_0007113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013076 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0013176.md b/md/UBERON/76/UBERON_0013176.md index 35b8c448c6..f600510ef5 100644 --- a/md/UBERON/76/UBERON_0013176.md +++ b/md/UBERON/76/UBERON_0013176.md @@ -8,8 +8,8 @@ ## Synonyms * museau de singe@fr - * monkey lips [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] - * phonic lips [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * monkey lips [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html ] + * phonic lips [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013176 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0013476.md b/md/UBERON/76/UBERON_0013476.md index bd6838c14d..890fed39ea 100644 --- a/md/UBERON/76/UBERON_0013476.md +++ b/md/UBERON/76/UBERON_0013476.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013476 * *Label* = dermal layer of tongue - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23153189] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23153189 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013476 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0013676.md b/md/UBERON/76/UBERON_0013676.md index 7cb4c4b47f..88a5857375 100644 --- a/md/UBERON/76/UBERON_0013676.md +++ b/md/UBERON/76/UBERON_0013676.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013676 * *Label* = aproctal bone of priapium - * *Definition* = he ventral element in the priapium of the Phallostethidae on which articulate the ctenactinia (q.v.). Also called aproctal or pelvic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.academic.ru/dic.nsf/en_ichthyology/1032/axial] + * *Definition* = he ventral element in the priapium of the Phallostethidae on which articulate the ctenactinia (q.v.). Also called aproctal or pelvic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.academic.ru/dic.nsf/en_ichthyology/1032/axial ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013676 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0013776.md b/md/UBERON/76/UBERON_0013776.md index 3923d14f9a..265306b59a 100644 --- a/md/UBERON/76/UBERON_0013776.md +++ b/md/UBERON/76/UBERON_0013776.md @@ -20,15 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [palmar/plantar part of autopod](../../UBERON/37/UBERON_0008837.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0014376.md b/md/UBERON/76/UBERON_0014376.md index 72c333e441..5bb9bb54d1 100644 --- a/md/UBERON/76/UBERON_0014376.md +++ b/md/UBERON/76/UBERON_0014376.md @@ -6,11 +6,11 @@ ## Synonyms - * thenar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thenar_eminence] - * thenar compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thenar_eminence] - * thenar eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thenar_eminence] - * thenar muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thenar_eminence] - * thenar muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thenar_eminence] + * thenar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thenar_eminence ] + * thenar compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thenar_eminence ] + * thenar eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thenar_eminence ] + * thenar muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thenar_eminence ] + * thenar muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thenar_eminence ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscles of hand can be remembered using the mnemonic, 'A OF A OF A' for, Abductor pollicis brevis, Opponens pollicis, Flexor pollicis brevis, Adductor pollicis (thenar muscles) and Opponens digiti minimi, Flexor digiti minimi, Abductor digiti minimi (hypothenar muscles)[Wikipedia:Thenar_eminence]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014376 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0014776.md b/md/UBERON/76/UBERON_0014776.md index 9fc754ab64..62c2e7fa89 100644 --- a/md/UBERON/76/UBERON_0014776.md +++ b/md/UBERON/76/UBERON_0014776.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromere](../../UBERON/31/UBERON_0004731.md) and [part_of](../../BFO/50/BFO_0000050.md) some [presumptive midbrain](../../UBERON/16/UBERON_0009616.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014776 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_0014876.md b/md/UBERON/76/UBERON_0014876.md index 60d92ce2dd..5c74636b77 100644 --- a/md/UBERON/76/UBERON_0014876.md +++ b/md/UBERON/76/UBERON_0014876.md @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of pes](../../UBERON/67/UBERON_0003867.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014876 + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000176.md b/md/UBERON/76/UBERON_2000176.md index af23e632e8..c6425008de 100644 --- a/md/UBERON/76/UBERON_2000176.md +++ b/md/UBERON/76/UBERON_2000176.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000276.md b/md/UBERON/76/UBERON_2000276.md index 3cb0266ee7..4b9e0bc5e0 100644 --- a/md/UBERON/76/UBERON_2000276.md +++ b/md/UBERON/76/UBERON_2000276.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000376.md b/md/UBERON/76/UBERON_2000376.md index 02d07f185b..90e400dd84 100644 --- a/md/UBERON/76/UBERON_2000376.md +++ b/md/UBERON/76/UBERON_2000376.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000376 * *Label* = infraorbital - * *Definition* = Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * circumorbital series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000376] - * circumorbitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000376[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * infraorbitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000376[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * infraorbital series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000376] + * circumorbital series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000376 ] + * circumorbitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000376, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * infraorbitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000376, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * infraorbital series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000376 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:2000489 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000476.md b/md/UBERON/76/UBERON_2000476.md index bb6658aee3..a94cce4180 100644 --- a/md/UBERON/76/UBERON_2000476.md +++ b/md/UBERON/76/UBERON_2000476.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000476 * *Label* = branchiostegal ray - * *Definition* = Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). ## Synonyms - * branchiostegal rays [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000476[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * branchiostegal rays [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000476, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000576.md b/md/UBERON/76/UBERON_2000576.md index 1e58b4959c..3181ecea80 100644 --- a/md/UBERON/76/UBERON_2000576.md +++ b/md/UBERON/76/UBERON_2000576.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000576 * *Label* = pterotic - * *Definition* = Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * autopterotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000576] + * autopterotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000576 ] ## Cross-references @@ -39,7 +39,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000676.md b/md/UBERON/76/UBERON_2000676.md index 357b3c3a25..7186f34221 100644 --- a/md/UBERON/76/UBERON_2000676.md +++ b/md/UBERON/76/UBERON_2000676.md @@ -6,8 +6,8 @@ ## Synonyms - * saccular otolith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000676] - * sacculith [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000676] + * saccular otolith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000676 ] + * sacculith [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000676 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000776.md b/md/UBERON/76/UBERON_2000776.md index 241b84450b..5d3bc45c2e 100644 --- a/md/UBERON/76/UBERON_2000776.md +++ b/md/UBERON/76/UBERON_2000776.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000776 * *Label* = hypaxial region somite 6 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2000876.md b/md/UBERON/76/UBERON_2000876.md index a3bfb8a80d..33fd93c590 100644 --- a/md/UBERON/76/UBERON_2000876.md +++ b/md/UBERON/76/UBERON_2000876.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 11 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000876[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 11 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000876, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_2000976.md b/md/UBERON/76/UBERON_2000976.md index 43a9b6abd9..7d6de05fdc 100644 --- a/md/UBERON/76/UBERON_2000976.md +++ b/md/UBERON/76/UBERON_2000976.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000976 * *Label* = somite 16 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 16 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001076.md b/md/UBERON/76/UBERON_2001076.md index 8b50f16263..c0b88e1c98 100644 --- a/md/UBERON/76/UBERON_2001076.md +++ b/md/UBERON/76/UBERON_2001076.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001076 * *Label* = intestinal bulb - * *Definition* = This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anterior intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001076] + * anterior intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001076 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001476.md b/md/UBERON/76/UBERON_2001476.md index 042603d29d..42b71fcbfd 100644 --- a/md/UBERON/76/UBERON_2001476.md +++ b/md/UBERON/76/UBERON_2001476.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001476 * *Label* = sublingual ventral ossification - * *Definition* = Sublingual that is the ventral element paired with the sublingual dorsal ossification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Sublingual that is the ventral element paired with the sublingual dorsal ossification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001676.md b/md/UBERON/76/UBERON_2001676.md index ce0fd72583..9315ea1549 100644 --- a/md/UBERON/76/UBERON_2001676.md +++ b/md/UBERON/76/UBERON_2001676.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001676 * *Label* = mesethmoid-premaxillary joint - * *Definition* = Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [mesethmoid bone](../../UBERON/38/UBERON_0011238.md) and [core#connects](../../ts/core#connects.md) some [premaxilla](../../UBERON/44/UBERON_0002244.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001776.md b/md/UBERON/76/UBERON_2001776.md index 216ef761aa..fe0c06ea65 100644 --- a/md/UBERON/76/UBERON_2001776.md +++ b/md/UBERON/76/UBERON_2001776.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001876.md b/md/UBERON/76/UBERON_2001876.md index 0348b86cb6..1585a32123 100644 --- a/md/UBERON/76/UBERON_2001876.md +++ b/md/UBERON/76/UBERON_2001876.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001876 * *Label* = basibranchial 3 cartilage - * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is ventral, median, and associated with branchial arch 3 (pharyngeal arch 5). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basibranchial 3 element](../../UBERON/17/UBERON_2001917.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2001976.md b/md/UBERON/76/UBERON_2001976.md index b18ac8b595..714d7d8e72 100644 --- a/md/UBERON/76/UBERON_2001976.md +++ b/md/UBERON/76/UBERON_2001976.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001976 * *Label* = interorbital septum - * *Definition* = Anatomical cluster composed of one or more bones and tissue that separates the orbits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster composed of one or more bones and tissue that separates the orbits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2002076.md b/md/UBERON/76/UBERON_2002076.md index 00ec9d71cb..9d6e14f004 100644 --- a/md/UBERON/76/UBERON_2002076.md +++ b/md/UBERON/76/UBERON_2002076.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002076 * *Label* = lateral process of basipterygium - * *Definition* = Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * posterolateral process of basipterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002076] + * posterolateral process of basipterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002076 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2002176.md b/md/UBERON/76/UBERON_2002176.md index ad6ad9b8a8..774a698931 100644 --- a/md/UBERON/76/UBERON_2002176.md +++ b/md/UBERON/76/UBERON_2002176.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2002276.md b/md/UBERON/76/UBERON_2002276.md index 1dbb865bcb..516c9f5f71 100644 --- a/md/UBERON/76/UBERON_2002276.md +++ b/md/UBERON/76/UBERON_2002276.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002276 * *Label* = obsolete median fin - * *Definition* = Fin that is an unpaired fin located in the sagittal plane of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fin that is an unpaired fin located in the sagittal plane of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * nageoire impaire [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * p?rissopt?rygie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000140] + * nageoire impaire [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * p?rissopt?rygie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000140 ] ## Cross-references @@ -30,8 +30,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = VSAO:0000162 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_2005076.md b/md/UBERON/76/UBERON_2005076.md index 132614e947..255aedb491 100644 --- a/md/UBERON/76/UBERON_2005076.md +++ b/md/UBERON/76/UBERON_2005076.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_2005176.md b/md/UBERON/76/UBERON_2005176.md index 25d961e85b..34d12b745f 100644 --- a/md/UBERON/76/UBERON_2005176.md +++ b/md/UBERON/76/UBERON_2005176.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005176 * *Label* = obsolete CoSA - * *Definition* = An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-010807-17[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-649] + * *Definition* = An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-010807-17, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-649 ] * *Comment* = This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. obsoleting because incorrectly generalized to teleosts. ## Synonyms - * secondary commissural interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005176] + * secondary commissural interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005176 ] ## Cross-references @@ -29,8 +29,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_2005276.md b/md/UBERON/76/UBERON_2005276.md index 50bee45918..b3985dd559 100644 --- a/md/UBERON/76/UBERON_2005276.md +++ b/md/UBERON/76/UBERON_2005276.md @@ -27,7 +27,9 @@ ## Other Annotations * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2005376.md b/md/UBERON/76/UBERON_2005376.md index c999f05879..6b0defea8d 100644 --- a/md/UBERON/76/UBERON_2005376.md +++ b/md/UBERON/76/UBERON_2005376.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005376 * *Label* = dorsal fin distal radial bone 5 - * *Definition* = dorsal fin distal radial 5 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 5 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 5](../../UBERON/76/UBERON_2105376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2105376.md b/md/UBERON/76/UBERON_2105376.md index 518576d9fa..5ae8af40c9 100644 --- a/md/UBERON/76/UBERON_2105376.md +++ b/md/UBERON/76/UBERON_2105376.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 5](../../UBERON/68/UBERON_2005368.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_2205376.md b/md/UBERON/76/UBERON_2205376.md index f27496ec8a..ffae268c55 100644 --- a/md/UBERON/76/UBERON_2205376.md +++ b/md/UBERON/76/UBERON_2205376.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205376 * *Label* = dorsal fin distal radial cartilage 5 - * *Definition* = dorsal fin distal radial 5 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 5 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 5](../../UBERON/76/UBERON_2105376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_3000376.md b/md/UBERON/76/UBERON_3000376.md index 752f87a548..ebbc35f2e3 100644 --- a/md/UBERON/76/UBERON_3000376.md +++ b/md/UBERON/76/UBERON_3000376.md @@ -6,7 +6,7 @@ ## Synonyms - * palatine teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000376] + * palatine teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000376 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0012073 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm. * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/76/UBERON_3000676.md b/md/UBERON/76/UBERON_3000676.md index dda5835ab7..c12fef0dc7 100644 --- a/md/UBERON/76/UBERON_3000676.md +++ b/md/UBERON/76/UBERON_3000676.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000676 * *Label* = bronchial process - * *Definition* = Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus trachealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000676] + * processus trachealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000676 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_3000776.md b/md/UBERON/76/UBERON_3000776.md index e50643a5c0..d5ad1907a7 100644 --- a/md/UBERON/76/UBERON_3000776.md +++ b/md/UBERON/76/UBERON_3000776.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000776 * *Label* = glenoid foramen - * *Definition* = Opening on the glenoid fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the glenoid fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_3000876.md b/md/UBERON/76/UBERON_3000876.md index 2557c3a7d6..841b5eb89c 100644 --- a/md/UBERON/76/UBERON_3000876.md +++ b/md/UBERON/76/UBERON_3000876.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000876 * *Label* = spina pelvis anterior - * *Definition* = Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_3010076.md b/md/UBERON/76/UBERON_3010076.md index 64a2b5f98d..7dab83b98b 100644 --- a/md/UBERON/76/UBERON_3010076.md +++ b/md/UBERON/76/UBERON_3010076.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010076 * *Label* = M. iliacus internus - * *Definition* = Muscle originates on the ventral border of the ala ossis ilei to insert on the dorso-medial surface of the femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Muscle originates on the ventral border of the ala ossis ilei to insert on the dorso-medial surface of the femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_3010576.md b/md/UBERON/76/UBERON_3010576.md index 4c34dfeae3..8a8f4e6c03 100644 --- a/md/UBERON/76/UBERON_3010576.md +++ b/md/UBERON/76/UBERON_3010576.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010576 * *Label* = prenasal - * *Definition* = A dermal bone that forms anterior to the premaxillae between the maxillae and articulates with the nasals posteriorly. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LT] + * *Definition* = A dermal bone that forms anterior to the premaxillae between the maxillae and articulates with the nasals posteriorly. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LT ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_4000176.md b/md/UBERON/76/UBERON_4000176.md index 2f7900f324..765c8004ca 100644 --- a/md/UBERON/76/UBERON_4000176.md +++ b/md/UBERON/76/UBERON_4000176.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000176 * *Label* = anal fin lepidotrichium - * *Definition* = Lepidotrichium that is part of the anal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Lepidotrichium that is part of the anal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * anal fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000176[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * anal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000176] + * anal fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000176, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * anal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000176 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal fin](../../UBERON/63/UBERON_4000163.md) ## Other Logical Axioms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_4200076.md b/md/UBERON/76/UBERON_4200076.md index a4f26aff70..1565dd893c 100644 --- a/md/UBERON/76/UBERON_4200076.md +++ b/md/UBERON/76/UBERON_4200076.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/76/UBERON_4200176.md b/md/UBERON/76/UBERON_4200176.md index 28bdfb5252..bbdccab2ea 100644 --- a/md/UBERON/76/UBERON_4200176.md +++ b/md/UBERON/76/UBERON_4200176.md @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0000077.md b/md/UBERON/77/UBERON_0000077.md index 42b0451f7f..301209abbd 100644 --- a/md/UBERON/77/UBERON_0000077.md +++ b/md/UBERON/77/UBERON_0000077.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000077 * *Label* = mixed endoderm/mesoderm-derived structure - * *Definition* = An anatomical structure that develops from the endoderm and the mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops from the endoderm and the mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0000177.md b/md/UBERON/77/UBERON_0000177.md index 0ec961f173..9d906660b6 100644 --- a/md/UBERON/77/UBERON_0000177.md +++ b/md/UBERON/77/UBERON_0000177.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000177 * *Label* = pus - * *Definition* = Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ENVO:02000038[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pus] + * *Definition* = Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ENVO:02000038, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pus ] * *Comment* = AO notes: biospecimen in NCIT ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0000377.md b/md/UBERON/77/UBERON_0000377.md index 759b7c5685..5937c59108 100644 --- a/md/UBERON/77/UBERON_0000377.md +++ b/md/UBERON/77/UBERON_0000377.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000377 * *Label* = maxillary nerve - * *Definition* = the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009799[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_nerve] + * *Definition* = the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009799, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_nerve ] ## Synonyms - * maxillary division [V2] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * maxillary division [Vb] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * maxillary division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * maxillary division of trigeminal nerve (Vb; V2) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * maxillary nerve [V2] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * maxillary nerve [Vb] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * nervus maxillaris (Vb; V2) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * nervus maxillaris [v2] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus maxillaris [vb] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ramus maxillaris (ramus V2) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010670] - * second division of fifth cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * second division of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52724] - * trigeminal V nerve maxillary division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001103] - * n. maxillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxillary_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus maxillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001378] + * maxillary division [V2] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * maxillary division [Vb] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * maxillary division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * maxillary division of trigeminal nerve (Vb; V2) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * maxillary nerve [V2] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * maxillary nerve [Vb] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * nervus maxillaris (Vb; V2) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * nervus maxillaris [v2] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus maxillaris [vb] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ramus maxillaris (ramus V2) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010670 ] + * second division of fifth cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * second division of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52724 ] + * trigeminal V nerve maxillary division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001103 ] + * n. maxillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxillary_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus maxillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001378 ] ## Cross-references @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Medial ramus (sensory) of the trigeminal nerve.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of trunk maxillary-mandibularis (AAO:0010669)[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0000477.md b/md/UBERON/77/UBERON_0000477.md index 67abacd099..defd36d833 100644 --- a/md/UBERON/77/UBERON_0000477.md +++ b/md/UBERON/77/UBERON_0000477.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000477 * *Label* = anatomical cluster - * *Definition* = Anatomical group that has its parts adjacent to one another. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical group that has its parts adjacent to one another. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0000977.md b/md/UBERON/77/UBERON_0000977.md index 96db413047..130253d585 100644 --- a/md/UBERON/77/UBERON_0000977.md +++ b/md/UBERON/77/UBERON_0000977.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000977 * *Label* = pleura - * *Definition* = The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pleura] + * *Definition* = The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pleura ] * *Comment* = In mouse, is_a cavity lining. In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term 'pleura' is best used for the mesothelial lining (thus excluding connective tissue). See http://purl.obolibrary.org/obo/uberon/tracker/86 ## Synonyms * wall of pleural sac * pleura - * pleural tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001791] + * pleural tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001791 ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A04.716 * OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA * SCTID:181609007 - * UMLS:C0032225 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pleural_Tissue] + * UMLS:C0032225 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pleural_Tissue ] * VHOG:0000394 * Wikipedia:Pleura * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pleural sac](../../UBERON/78/UBERON_0009778.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The serous membrane that covers the lungs and lines the pleural cavity. [Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.264][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pleural * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001077.md b/md/UBERON/77/UBERON_0001077.md index 8d3ea41f87..25323edde5 100644 --- a/md/UBERON/77/UBERON_0001077.md +++ b/md/UBERON/77/UBERON_0001077.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001077 * *Label* = transverse process of vertebra - * *Definition* = The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_process] + * *Definition* = The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_process ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001177.md b/md/UBERON/77/UBERON_0001177.md index acef7751aa..c11668a3b3 100644 --- a/md/UBERON/77/UBERON_0001177.md +++ b/md/UBERON/77/UBERON_0001177.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001177 * *Label* = left hepatic duct - * *Definition* = The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medterms.com/script/main/art.asp?articlekey=26035] + * *Definition* = The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medterms.com/script/main/art.asp?articlekey=26035 ] ## Synonyms - * ductus hepaticus sinister [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus hepaticus sinister [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:14670 * MA:0001638 * SCTID:245400009 - * UMLS:C0227560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Hepatic_Duct] + * UMLS:C0227560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Hepatic_Duct ] * VHOG:0000218 * ncithesaurus:Left_Hepatic_Duct @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [left lobe of liver](../../UBERON/15/UBERON_0001115.md) and [extrahepatic bile duct](../../UBERON/03/UBERON_0003703.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The duct which drains bile from the left half of the liver and unites with the right hepatic duct to form the common hepatic duct. [adapted_from_http://www.medterms.com/script/main/art.asp?articlekey=26032][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001277.md b/md/UBERON/77/UBERON_0001277.md index 7774e6e3eb..50a2a61332 100644 --- a/md/UBERON/77/UBERON_0001277.md +++ b/md/UBERON/77/UBERON_0001277.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001277 * *Label* = intestinal epithelium - * *Definition* = The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A03.492.411.369[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intestinal_epithelium] + * *Definition* = The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A03.492.411.369, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intestinal_epithelium ] ## Synonyms - * bowel epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bowel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * intestine epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * villous epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005124] + * bowel epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bowel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * intestine epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * villous epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005124 ] * intestine epithelium ## Cross-references @@ -25,7 +25,7 @@ * MA:0001536 * SCTID:266135004 * TAO:0005124 - * UMLS:C0226890 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intestinal_Epithelium] + * UMLS:C0226890 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intestinal_Epithelium ] * Wikipedia:Intestinal_epithelium * ZFA:0005124 * ncithesaurus:Intestinal_Epithelium @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) ## Other Logical Axioms @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001377.md b/md/UBERON/77/UBERON_0001377.md index 142b59bc3c..efb9a9a931 100644 --- a/md/UBERON/77/UBERON_0001377.md +++ b/md/UBERON/77/UBERON_0001377.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001377 * *Label* = quadriceps femoris - * *Definition* = One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms * quadriceps * quadriceps femoris muscle - * musculus quadriceps femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001149] - * musculus quadriceps femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadriceps_femoris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * quadricep muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001149] - * quadriceps muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001149] - * quadriceps muscle of the thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001149] - * quadriceps muscle of thigh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001149] + * musculus quadriceps femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001149 ] + * musculus quadriceps femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadriceps_femoris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * quadricep muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001149 ] + * quadriceps muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001149 ] + * quadriceps muscle of the thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001149 ] + * quadriceps muscle of thigh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001149 ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0002363 * OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA * SCTID:181669009 - * UMLS:C0224440 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Quadriceps_Muscle_of_the_Thigh] + * UMLS:C0224440 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Quadriceps_Muscle_of_the_Thigh ] * VHOG:0000828 * Wikipedia:Quadriceps_femoris_muscle * galen:QuadricepsFemoris @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [rectus femoris](../../UBERON/78/UBERON_0001378.md)or[vastus intermedius](../../UBERON/47/UBERON_0014847.md)or[vastus lateralis](../../UBERON/79/UBERON_0001379.md)or[vastus medialis](../../UBERON/80/UBERON_0001380.md) ## Other Logical Axioms @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001477.md b/md/UBERON/77/UBERON_0001477.md index e976e54f2d..5a36a90029 100644 --- a/md/UBERON/77/UBERON_0001477.md +++ b/md/UBERON/77/UBERON_0001477.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001477 * *Label* = infraspinatus muscle - * *Definition* = The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraspinatus_muscle] + * *Definition* = The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraspinatus_muscle ] * *Comment* = Taxon notes: The pectoral muscles the pectoralis major and pectoralis minor evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis.[WP] ## Synonyms * infraspinatus - * musculus infraspinatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infraspinatus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus infraspinatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infraspinatus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002323 * OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA * SCTID:277439009 - * UMLS:C0584882 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Infraspinatus] + * UMLS:C0584882 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Infraspinatus ] * VHOG:0000921 * Wikipedia:Infraspinatus_muscle * http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001577.md b/md/UBERON/77/UBERON_0001577.md index 934982b504..bdc98fc4a7 100644 --- a/md/UBERON/77/UBERON_0001577.md +++ b/md/UBERON/77/UBERON_0001577.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001577 * *Label* = facial nerve muscle - * *Definition* = The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_muscles] + * *Definition* = The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_muscles ] * *Comment* = AO notes: Check the MA class cranial/facial muscle, this may be broader. Editor notes: currently defined by innervation, check this. Editor notes: PMID:19531159 states that facial muscles are hyoid muscles ## Synonyms * face muscle - * face muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * facial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0001013] - * facial nerve innervated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscle of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46751] - * muscle organ of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cranial/facial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000579] - * mimetic muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_muscles] - * muscle of facial expression [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_muscles] - * muscles of facial expression [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_muscles] - * musculi faciei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * face muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * facial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0001013 ] + * facial nerve innervated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscle of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46751 ] + * muscle organ of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cranial/facial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000579 ] + * mimetic muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_muscles ] + * muscle of facial expression [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_muscles ] + * muscles of facial expression [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_muscles ] + * musculi faciei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MA:0000579 * MESH:A02.633.567.400 * SCTID:25903009 - * UMLS:C0015460 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Facial_Muscle] + * UMLS:C0015460 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Facial_Muscle ] * Wikipedia:Facial_muscles * XAO:0001013 * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [innervated_by](../../RO/05/RO_0002005.md) some [facial nerve](../../UBERON/47/UBERON_0001647.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001677.md b/md/UBERON/77/UBERON_0001677.md index e63f904cba..ba81653d78 100644 --- a/md/UBERON/77/UBERON_0001677.md +++ b/md/UBERON/77/UBERON_0001677.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001677 * *Label* = sphenoid bone - * *Definition* = an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone] + * *Definition* = an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone ] * *Comment* = part of viscerocranium in FMA, part of chondrocranium in MA ## Synonyms - * os sphenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52736[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os sphenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52736, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sphenoid * sphenoidal bone - * butterfly bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone] - * os sphenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os sphenoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone] - * os sphenoidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphenoid_bone] + * butterfly bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone ] + * os sphenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone ] + * os sphenoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os sphenoidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphenoid_bone ] * sphenoid complex ## Cross-references @@ -27,7 +27,7 @@ * MESH:A02.835.232.781.802 * OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA * SCTID:272676008 - * UMLS:C0037884 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphenoid_Bone] + * UMLS:C0037884 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphenoid_Bone ] * Wikipedia:Sphenoid_bone * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg @@ -45,23 +45,24 @@ * [pneumatized bone](../../UBERON/93/UBERON_0008193.md) * [sphenoid endochondral element](../../UBERON/60/UBERON_0015060.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [chondrocranium](../../UBERON/41/UBERON_0002241.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) * [develops from](../../RO/02/RO_0002202.md) some [sphenoid cartilage element](../../UBERON/93/UBERON_0009193.md) * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [sphenoid endochondral element](../../UBERON/60/UBERON_0015060.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001777.md b/md/UBERON/77/UBERON_0001777.md index 11f6595307..7447fa029b 100644 --- a/md/UBERON/77/UBERON_0001777.md +++ b/md/UBERON/77/UBERON_0001777.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001777 * *Label* = substantia propria of cornea - * *Definition* = The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamell (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamell interweaving more than posterior lamell. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamell. The lamell are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamell are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_stroma] + * *Definition* = The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamell (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamell interweaving more than posterior lamell. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamell. The lamell are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamell are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_stroma ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -24,7 +24,7 @@ * MESH:A09.371.060.217.228 * SCTID:362511000 * TAO:0002189 - * UMLS:C0010040 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corneal_Stroma] + * UMLS:C0010040 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corneal_Stroma ] * Wikipedia:Corneal_stroma * ZFA:0001685 * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cornea](../../UBERON/64/UBERON_0000964.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass tissue (CARO:0000043) CHANGED TO: develops_from tissue (UBERON:0000479)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass tissue (CARO:0000043) CHANGED TO: has_developmental_contribution_from tissue (UBERON:0000479)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001877.md b/md/UBERON/77/UBERON_0001877.md index b3237a964a..57e5396c7d 100644 --- a/md/UBERON/77/UBERON_0001877.md +++ b/md/UBERON/77/UBERON_0001877.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001877 * *Label* = medial septal nucleus - * *Definition* = Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1668] + * *Definition* = Cells lying generally in front of Regional_part_of_septal_nuclei, lying ventral to and slightly medial to the lateral septal nucleus. Neurons in this nucleus give rise to the bulk of efferents from the septal nuclei. A major projection from the medial septal nucleus terminates in the hippocampal formation (Adapted from Brodal, 1981). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1668 ] ## Synonyms - * medial parolfactory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61879] - * medial septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1668] - * medial septal nucleus (Cajal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:262] - * medial septum nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:262] - * n. septi medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:262[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:262[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus septalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002446] - * supramamil1ary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MS] + * medial parolfactory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61879 ] + * medial septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1668 ] + * medial septal nucleus (Cajal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:262 ] + * medial septum nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:262 ] + * n. septi medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:262, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:262, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus septalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002446 ] + * supramamil1ary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MS ] ## Cross-references @@ -26,8 +26,8 @@ * FMA:61879 * MA:0000935 * NIF_GrossAnatomy:birnlex_1668 - * NeuroNames:262 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1668] - * UMLS:C0175233 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1668] + * NeuroNames:262 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1668 ] + * UMLS:C0175233 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1668 ] * Wikipedia:Medial_septal_nucleus ## Subsets @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial septal complex](../../UBERON/29/UBERON_0007629.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies[BTO:0002446, Dorlands_Medical_Dictionary:MerckSource]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The medial septal nucleus is one of the septal nuclei. It plays a role in the generation of theta waves[Wikipedia:Medial_septal_nucleus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0001977.md b/md/UBERON/77/UBERON_0001977.md index 62e26048b3..4421cb0398 100644 --- a/md/UBERON/77/UBERON_0001977.md +++ b/md/UBERON/77/UBERON_0001977.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001977 * *Label* = serum - * *Definition* = Body substance derived from plasma by the elimination of fibrinogen.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Serum] + * *Definition* = Body substance derived from plasma by the elimination of fibrinogen.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Serum ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -18,7 +18,7 @@ * EHDAA2:0004728 * FMA:63083 * MA:0002502 - * UMLS:C0229671 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Serum] + * UMLS:C0229671 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Serum ] * Wikipedia:Serum * ncithesaurus:Serum @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002077.md b/md/UBERON/77/UBERON_0002077.md index f0f071d808..f45b895ab1 100644 --- a/md/UBERON/77/UBERON_0002077.md +++ b/md/UBERON/77/UBERON_0002077.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002077 * *Label* = cortex of hair - * *Definition* = A cortex that is part of a hair [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cortex that is part of a hair [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * coat hair cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * coat/hair cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cortex of coat hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cortex of coat/hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * coat hair cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * coat/hair cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cortex of coat hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cortex of coat/hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * hair cortex ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002177.md b/md/UBERON/77/UBERON_0002177.md index 0b856ed83d..ce0c9ce7f8 100644 --- a/md/UBERON/77/UBERON_0002177.md +++ b/md/UBERON/77/UBERON_0002177.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002177 * *Label* = right main bronchus - * *Definition* = The main bronchus on the right side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_main_bronchus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The main bronchus on the right side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_main_bronchus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Divides into 3 lobar bronchi in humans[ISBN10:0123813611] ## Synonyms * right major bronchus - * right primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_main_bronchus] - * right principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_main_bronchus] - * bronchus principalis dexter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_main_bronchus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * right primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_main_bronchus ] + * right principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_main_bronchus ] + * bronchus principalis dexter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_main_bronchus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * right bronchus ## Cross-references @@ -20,7 +20,7 @@ * MA:0001849 * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA * SCTID:361955002 - * UMLS:C0225608 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Main_Bronchus] + * UMLS:C0225608 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Main_Bronchus ] * Wikipedia:Right_main_bronchus * http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [right lung lobe](../../UBERON/18/UBERON_0006518.md) and [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002277.md b/md/UBERON/77/UBERON_0002277.md index e03439fad3..d1f8b26aff 100644 --- a/md/UBERON/77/UBERON_0002277.md +++ b/md/UBERON/77/UBERON_0002277.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002377.md b/md/UBERON/77/UBERON_0002377.md index 99b1263a3f..af8fe677e5 100644 --- a/md/UBERON/77/UBERON_0002377.md +++ b/md/UBERON/77/UBERON_0002377.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002377 * *Label* = muscle of neck - * *Definition* = Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9617] + * *Definition* = Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9617 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * muscle organ of neck (volume) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neck (volume) muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of neck (volume) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neck (volume) muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * neck muscle - * neck muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neck muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * GAID:149 * MA:0000587 * MESH:A02.633.567.650 - * UMLS:C0027532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neck_Muscle] + * UMLS:C0027532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neck_Muscle ] * ncithesaurus:Neck_Muscle ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002477.md b/md/UBERON/77/UBERON_0002477.md index 1f544aaa6b..f86c443ee3 100644 --- a/md/UBERON/77/UBERON_0002477.md +++ b/md/UBERON/77/UBERON_0002477.md @@ -3,47 +3,47 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002477 * *Label* = medial globus pallidus - * *Definition* = The more medial segment of the globus pallidus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1555] + * *Definition* = The more medial segment of the globus pallidus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1555 ] * *Comment* = See also: endopeduncular nucleus ## Synonyms - * entopeduncular nucleus (monakow) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * globus pallidus interna [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * globus pallidus internal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * globus pallidus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * globus pallidus internus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * globus pallidus medial segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * globus pallidus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002248] - * globus pallidus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * globus pallidus medialis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * globus pallidus, medial segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * internal globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * internal pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1555] - * internal part of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1555] - * medial pallidal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * medial part of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * medial segment of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1555] - * mesial pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * pallidus I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840] - * pars medialis globi pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61840[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Pallidum dorsal region internal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GPi] - * entopeduncular nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002768] - * globus pallidus inernal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002768] - * globus pallidus medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GPm] - * globus pallidus medial segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002768] - * globus pallidus pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * globus pallidus, internal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233] - * globus pallidus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233] - * globus pallidus, pars interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial division of globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233] - * medial globus pallidus (entopeduncular nucleus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGP] - * medial segment of the globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233] - * nucleus medialis globi pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:233[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * entopeduncular nucleus (monakow) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * globus pallidus interna [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * globus pallidus internal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * globus pallidus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * globus pallidus internus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * globus pallidus medial segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * globus pallidus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002248 ] + * globus pallidus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * globus pallidus medialis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * globus pallidus, medial segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * internal globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * internal pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1555 ] + * internal part of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1555 ] + * medial pallidal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * medial part of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * medial segment of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1555 ] + * mesial pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * pallidus I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840 ] + * pars medialis globi pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61840, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Pallidum dorsal region internal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GPi ] + * entopeduncular nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002768 ] + * globus pallidus inernal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002768 ] + * globus pallidus medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GPm ] + * globus pallidus medial segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002768 ] + * globus pallidus pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * globus pallidus, internal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233 ] + * globus pallidus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233 ] + * globus pallidus, pars interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial division of globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233 ] + * medial globus pallidus (entopeduncular nucleus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGP ] + * medial segment of the globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233 ] + * nucleus medialis globi pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:233, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pallidum I - * pallidum II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002248] + * pallidum II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002248 ] * pallidus I - * principal medial geniculate nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGP] + * principal medial geniculate nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGP ] ## Cross-references @@ -56,9 +56,9 @@ * FMA:61840 * MA:0002768 * NIF_GrossAnatomy:birnlex_1555 - * NeuroNames:233 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1555] + * NeuroNames:233 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1555 ] * SCTID:361562000 - * UMLS:C0262283 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1555] + * UMLS:C0262283 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1555 ] * Wikipedia:Medial_globus_pallidus * http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif @@ -81,8 +81,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted][Wikipedia:Medial_globus_pallidus]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002577.md b/md/UBERON/77/UBERON_0002577.md index 250b5cde13..4bc319f761 100644 --- a/md/UBERON/77/UBERON_0002577.md +++ b/md/UBERON/77/UBERON_0002577.md @@ -6,11 +6,11 @@ ## Synonyms - * cortex of inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72411] - * dorsal cortex of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:477] - * inferior colliculus, dorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:477] - * nucleus pericentralis (colliculi inferioris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:477[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pericentral nucleus of the inferior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:477] + * cortex of inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72411 ] + * dorsal cortex of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:477 ] + * inferior colliculus, dorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:477 ] + * nucleus pericentralis (colliculi inferioris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:477, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pericentral nucleus of the inferior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:477 ] ## Cross-references @@ -19,8 +19,8 @@ * BM:MB-Tec-ICP * FMA:72411 * NIF_GrossAnatomy:birnlex_1056 - * NeuroNames:477 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1056] - * UMLS:C0175369 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1056] + * NeuroNames:477 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1056 ] + * UMLS:C0175369 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1056 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002677.md b/md/UBERON/77/UBERON_0002677.md index 5a2bb6ead9..afae2d038c 100644 --- a/md/UBERON/77/UBERON_0002677.md +++ b/md/UBERON/77/UBERON_0002677.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002677 * *Label* = regional part of medullary raphe nuclear complex - * *Definition* = A regional part of brain that is part of a medullary raphe nuclear complex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a medullary raphe nuclear complex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medullary raphe nuclear complex segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83951] - * segment of medullary raphe nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1349] + * medullary raphe nuclear complex segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83951 ] + * segment of medullary raphe nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1349 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary raphe nuclear complex](../../UBERON/92/UBERON_0002692.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002777.md b/md/UBERON/77/UBERON_0002777.md index c004ca5130..dd562bd7a0 100644 --- a/md/UBERON/77/UBERON_0002777.md +++ b/md/UBERON/77/UBERON_0002777.md @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:77617 * *[consider](../../er/oboInOwl#consider.md)* = NIF_GrossAnatomy:birnlex_1672 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002777 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_0002877.md b/md/UBERON/77/UBERON_0002877.md index aa52e94228..515fd294e4 100644 --- a/md/UBERON/77/UBERON_0002877.md +++ b/md/UBERON/77/UBERON_0002877.md @@ -6,10 +6,10 @@ ## Synonyms - * nucleus fasciculus solitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2653] - * nucleus juxtasolitarius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2653] - * PSol [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2653[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * parvicellular subnucleus of solitary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PSol] + * nucleus fasciculus solitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2653 ] + * nucleus juxtasolitarius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2653 ] + * PSol [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2653, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * parvicellular subnucleus of solitary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PSol ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:77091 * NIF_GrossAnatomy:birnlex_2653 * NeuroNames:7 - * OldNeuroNames:1639234958 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2653] + * OldNeuroNames:1639234958 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2653 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0002977.md b/md/UBERON/77/UBERON_0002977.md index 451f703e0b..d65109ea34 100644 --- a/md/UBERON/77/UBERON_0002977.md +++ b/md/UBERON/77/UBERON_0002977.md @@ -6,11 +6,11 @@ ## Synonyms - * nucleus triangularis septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61880[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triangular nucleus of septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61880] - * triangular nucleus septum (cajal) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_816] - * nucleus septalis triangularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:263[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triangular nucleus of the septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:263] + * nucleus triangularis septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61880, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triangular nucleus of septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61880 ] + * triangular nucleus septum (cajal) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_816 ] + * nucleus septalis triangularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:263, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triangular nucleus of the septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:263 ] ## Cross-references @@ -21,8 +21,8 @@ * BM:Tel-Spt-STN * FMA:61880 * NIF_GrossAnatomy:birnlex_816 - * NeuroNames:263 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_816] - * UMLS:C0262351 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_816] + * NeuroNames:263 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_816 ] + * UMLS:C0262351 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_816 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003077.md b/md/UBERON/77/UBERON_0003077.md index 223931637c..4b39e58c57 100644 --- a/md/UBERON/77/UBERON_0003077.md +++ b/md/UBERON/77/UBERON_0003077.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003077 * *Label* = paraxial mesoderm - * *Definition* = The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048339] + * *Definition* = The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048339 ] * *Comment* = AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here) ## Synonyms - * paraxial mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000255] - * somitic mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * mesoderma paraxiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraxial_mesoderm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * paraxial mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000255 ] + * somitic mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * mesoderma paraxiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraxial_mesoderm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:16751 * SCTID:361475002 * TAO:0000255 - * UMLS:C1284009 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paraxial_Mesoderm] + * UMLS:C1284009 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paraxial_Mesoderm ] * VHOG:0000114 * Wikipedia:Paraxial_mesoderm * XAO:0000259 @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Presently, Cephalochordata, Urochordata, and Vertebrata are placed as subphyla of the phylum Chordata, in which the overall organization of embryonic tissues (dorsal hollow nerve cord, ventral digestive tract, axial notochord, and bilateral paraxial mesoderm) is largely conserved. In contrast, the echinoderms and hemichordates are sister groups of the chordates and they lack the notochord and paraxial mesoderm. Thus, the basic mesodermal organization of vertebrates must have appeared first in the common ancestor of the chordates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003177.md b/md/UBERON/77/UBERON_0003177.md index a6ecfd67ea..1d8b8a5ef1 100644 --- a/md/UBERON/77/UBERON_0003177.md +++ b/md/UBERON/77/UBERON_0003177.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004586 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000758 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003177 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_0003277.md b/md/UBERON/77/UBERON_0003277.md index 0276917d80..48ee26f1e5 100644 --- a/md/UBERON/77/UBERON_0003277.md +++ b/md/UBERON/77/UBERON_0003277.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003277 * *Label* = skeleton of upper jaw - * *Definition* = A subdivision of the skeleton that corresponds to the upper part of the mouth. The lower jaw skeleton includes the following elements, when present: upper jaw teeth, the maxilla and other lower jaw bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A subdivision of the skeleton that corresponds to the upper part of the mouth. The lower jaw skeleton includes the following elements, when present: upper jaw teeth, the maxilla and other lower jaw bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms * upper jaw skeleton - * upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001908] + * upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001908 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The jaw joint of all jawed vertebrates, except for mammals, involves the quadrate and articular bones, or the posterior ends of the palatoquadrate and mandibular cartilages; A correlate of the conversion of the articular and quadrate bones to the malleus and incus is that all adult mammals have a jaw joint that lies between the dentary of the lower jaw and the squamosal bone of the skull roof.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003477.md b/md/UBERON/77/UBERON_0003477.md index 502d9b5ba4..619f91348a 100644 --- a/md/UBERON/77/UBERON_0003477.md +++ b/md/UBERON/77/UBERON_0003477.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003477 * *Label* = vein of upper lip - * *Definition* = The inferior labial vein is the vein receiving blood from the upper lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_labial_vein] + * *Definition* = The inferior labial vein is the vein receiving blood from the upper lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_labial_vein ] ## Synonyms - * superior labial vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52538] - * upper lip vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena labialis superior [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior labial vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52538 ] + * upper lip vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena labialis superior [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [upper lip](../../UBERON/34/UBERON_0001834.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003577.md b/md/UBERON/77/UBERON_0003577.md index e863474039..bf7849f4ad 100644 --- a/md/UBERON/77/UBERON_0003577.md +++ b/md/UBERON/77/UBERON_0003577.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003577 * *Label* = knee connective tissue - * *Definition* = A portion of connective tissue that is part of a knee [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a knee [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * knee portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * knee textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * knee portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * knee textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [knee](../../UBERON/65/UBERON_0001465.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003677.md b/md/UBERON/77/UBERON_0003677.md index 2ff8f62ed4..6841e9f315 100644 --- a/md/UBERON/77/UBERON_0003677.md +++ b/md/UBERON/77/UBERON_0003677.md @@ -6,9 +6,9 @@ ## Synonyms - * radix corona [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55624] - * root of tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55624] - * tooth root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55624] + * radix corona [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55624 ] + * root of tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55624 ] + * tooth root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55624 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0003977.md b/md/UBERON/77/UBERON_0003977.md index f7089176bd..ce8efcd03c 100644 --- a/md/UBERON/77/UBERON_0003977.md +++ b/md/UBERON/77/UBERON_0003977.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003977 * *Label* = utricle duct - * *Definition* = the utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009260] + * *Definition* = the utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009260 ] ## Synonyms - * utricular duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009260] + * utricular duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009260 ] * utricular part of utriculosaccular duct ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004077.md b/md/UBERON/77/UBERON_0004077.md index ba9631e3ba..9e6ce2426c 100644 --- a/md/UBERON/77/UBERON_0004077.md +++ b/md/UBERON/77/UBERON_0004077.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004077 * *Label* = cerebellum vermis lobule IV - * *Definition* = The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009991[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Culmen_(cerebellum)] + * *Definition* = The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009991, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Culmen_(cerebellum) ] ## Synonyms * lobule IV of cerebellum vermis - * vermic lobule IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081227] + * vermic lobule IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081227 ] * culmen of cerebellum - * neuraxis culmen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83886] + * neuraxis culmen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83886 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004177.md b/md/UBERON/77/UBERON_0004177.md index 8928c9a8d1..eaeb8bab68 100644 --- a/md/UBERON/77/UBERON_0004177.md +++ b/md/UBERON/77/UBERON_0004177.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004177 * *Label* = hemopoietic organ - * *Definition* = Organ that is part of the hematopoietic system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:Obol] + * *Definition* = Organ that is part of the hematopoietic system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:Obol ] * *Comment* = Editor notes: consider splitting out lymph organ. AO notes: the FMA class 'lymphoid organ' is a general anatomical term ## Synonyms - * haematological system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * haemopoietic system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * haematological system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * haemopoietic system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * hematopoeitic organ - * hematopoietic system organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of haematological system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of haemopoietic system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of hematopoietic system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ of organa haemopoietica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organa haemopoietica organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hematopoietic system organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of haematological system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of haemopoietic system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of hematopoietic system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ of organa haemopoietica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organa haemopoietica organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * hematopoeitic or lymphoid organ - * lymph organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000747] - * lymphoid organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004605[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7143] + * lymph organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000747 ] + * lymphoid organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004605, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7143 ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hematopoietic system](../../UBERON/90/UBERON_0002390.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the organs in which the formed elements of the blood and lymph are produced[http://encyclopedia2.thefreedictionary.com/Hematopoietic+Organs]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004277.md b/md/UBERON/77/UBERON_0004277.md index 2d186e17a8..0603cf3afa 100644 --- a/md/UBERON/77/UBERON_0004277.md +++ b/md/UBERON/77/UBERON_0004277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004277 * *Label* = eye muscle - * *Definition* = A muscle that is part of the eye region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle that is part of the eye region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004377.md b/md/UBERON/77/UBERON_0004377.md index ca2f019df2..25e790f846 100644 --- a/md/UBERON/77/UBERON_0004377.md +++ b/md/UBERON/77/UBERON_0004377.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004377 * *Label* = distal metaphysis - * *Definition* = A metaphysis that is in_distal_side_of a diaphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metaphysis that is in_distal_side_of a diaphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal diaphyseal end of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32824] + * distal diaphyseal end of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32824 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_distal_side_of](../../BSPO/25/BSPO_0000125.md) some [diaphysis](../../UBERON/69/UBERON_0004769.md) and [metaphysis](../../UBERON/38/UBERON_0001438.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004477.md b/md/UBERON/77/UBERON_0004477.md index fb02a09e7d..110eae195a 100644 --- a/md/UBERON/77/UBERON_0004477.md +++ b/md/UBERON/77/UBERON_0004477.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004477 * *Label* = tongue musculature - * *Definition* = Any collection of muscles that is part of a tongue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a tongue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71289] - * muscles of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71289] - * musculi linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71289[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of muscles of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71289] + * muscle group of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71289 ] + * muscles of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71289 ] + * musculi linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71289, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of muscles of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71289 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004677.md b/md/UBERON/77/UBERON_0004677.md index 4a1b2f9198..652a7576b2 100644 --- a/md/UBERON/77/UBERON_0004677.md +++ b/md/UBERON/77/UBERON_0004677.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004677 * *Label* = spinal cord gray commissure - * *Definition* = The gray commissure is a thin strip of gray matter that surrounds the central canal of the spinal cord and, along with the anterior white commissure, connects the two halves of the cord. It comprises lamina X in the Rexed classification. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gray_commissure] + * *Definition* = The gray commissure is a thin strip of gray matter that surrounds the central canal of the spinal cord and, along with the anterior white commissure, connects the two halves of the cord. It comprises lamina X in the Rexed classification. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gray_commissure ] ## Synonyms - * gray commissure of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77036] - * spinal cord gray commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2669] - * spinal cord grey commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * commissura grisea anaterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gray_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura grisea posterior medulla spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gray_commissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gray commissure of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77036 ] + * spinal cord gray commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2669 ] + * spinal cord grey commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * commissura grisea anaterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gray_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura grisea posterior medulla spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gray_commissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:77036 * NIF_GrossAnatomy:birnlex_2669 * SCTID:362427009 - * UMLS:C1512274 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2669] + * UMLS:C1512274 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2669 ] * Wikipedia:Gray_commissure * http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004777.md b/md/UBERON/77/UBERON_0004777.md index 3fd6961029..00dc24280a 100644 --- a/md/UBERON/77/UBERON_0004777.md +++ b/md/UBERON/77/UBERON_0004777.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004777 * *Label* = respiratory system submucosa - * *Definition* = A submucosa that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius submucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * submucosa of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius submucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * submucosa of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0004877.md b/md/UBERON/77/UBERON_0004877.md index 88223a10ec..292ae9b380 100644 --- a/md/UBERON/77/UBERON_0004877.md +++ b/md/UBERON/77/UBERON_0004877.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004877 * *Label* = visceral endoderm - * *Definition* = Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011186[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15905405] + * *Definition* = Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011186, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15905405 ] * *Comment* = Note: Gilbert uses visceral endoderm as a synonym for primitive endoderm/hypoblast ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005077.md b/md/UBERON/77/UBERON_0005077.md index 1c27899401..fa4d217e72 100644 --- a/md/UBERON/77/UBERON_0005077.md +++ b/md/UBERON/77/UBERON_0005077.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005077 * *Label* = neuropore - * *Definition* = Joined neural folds at either end of the neural tube.[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021995] + * *Definition* = A temporary opening leading from the central canal of the embryonic neural tube to the exterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Synonyms @@ -17,20 +17,24 @@ ## Superclasses + * [orifice](../../UBERON/61/UBERON_0000161.md) * [embryonic structure](../../UBERON/50/UBERON_0002050.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) + * [connects](../../ts/core#connects.md) some [neural tube lumen](../../UBERON/42/UBERON_0003842.md) ## Equivalencies + * [anterior neuropore](../../UBERON/70/UBERON_0005070.md)or[posterior neuropore](../../UBERON/71/UBERON_0005071.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005177.md b/md/UBERON/77/UBERON_0005177.md index dab936653b..41ef5d3896 100644 --- a/md/UBERON/77/UBERON_0005177.md +++ b/md/UBERON/77/UBERON_0005177.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005177 * *Label* = trunk organ - * *Definition* = An organ that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that part of the trunk region. The trunk region can be further subdividied into thoracic (including chest and thoracic cavity) and abdominal (including abdomen and pelbis) regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005277.md b/md/UBERON/77/UBERON_0005277.md index 7ec0258455..fe0bbe8b52 100644 --- a/md/UBERON/77/UBERON_0005277.md +++ b/md/UBERON/77/UBERON_0005277.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005277 * *Label* = dorsal skin of toe - * *Definition* = A dorsal skin of digit that is part of a pedal digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal skin of digit that is part of a pedal digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = this class is explicitly the union of the two FMA classes ## Synonyms * dorsal toe skin - * skin of dorsal part of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37868] - * subdivision of skin of dorsal part of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60523] + * skin of dorsal part of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37868 ] + * subdivision of skin of dorsal part of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60523 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal skin of digit](../../UBERON/75/UBERON_0005275.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005377.md b/md/UBERON/77/UBERON_0005377.md index 69a7a8875b..6e67a87bd9 100644 --- a/md/UBERON/77/UBERON_0005377.md +++ b/md/UBERON/77/UBERON_0005377.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005377 * *Label* = olfactory bulb glomerular layer - * *Definition* = The glomerular layer is the most superficial layer, consisting of mitral cell dendritic arborizations (glomeruli), olfactory nerve fibers, and periglomerular cells. Periglomerular cells contact multiple mitral cell dendrites within the glomeruli and provide lateral inhibition of neighboring glomeruli while allowing excitation of a specific mitral cell dendritic tree. Each mitral cell is contacted by at least 1000 olfactory nerve fibers[BTO]. Portion of tissue which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001317] + * *Definition* = The glomerular layer is the most superficial layer, consisting of mitral cell dendritic arborizations (glomeruli), olfactory nerve fibers, and periglomerular cells. Periglomerular cells contact multiple mitral cell dendrites within the glomeruli and provide lateral inhibition of neighboring glomeruli while allowing excitation of a specific mitral cell dendritic tree. Each mitral cell is contacted by at least 1000 olfactory nerve fibers[BTO]. Portion of tissue which is located in between the primary olfactory fiber layer and the external cellular layer of the olfactory bulb[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001317 ] ## Synonyms - * olfactory bulb main glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005007] - * stratum glomerulosum bulbi olfactorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000357] - * glomerular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001317[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000357] - * glomerular layer of the olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Gl] + * olfactory bulb main glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005007 ] + * stratum glomerulosum bulbi olfactorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000357 ] + * glomerular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001317, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000357 ] + * glomerular layer of the olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Gl ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005477.md b/md/UBERON/77/UBERON_0005477.md index b2b1b34ce6..4109de3103 100644 --- a/md/UBERON/77/UBERON_0005477.md +++ b/md/UBERON/77/UBERON_0005477.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005477 * *Label* = stomach fundus epithelium - * *Definition* = A simple columnar epithelium that is part of a fundus of stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A simple columnar epithelium that is part of a fundus of stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17277] - * gastric epithelium of fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17277] - * gastric fundus epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17277] + * epithelium of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17277 ] + * gastric epithelium of fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17277 ] + * gastric fundus epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17277 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fundus of stomach](../../UBERON/60/UBERON_0001160.md) and [simple columnar epithelium](../../UBERON/85/UBERON_0000485.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005577.md b/md/UBERON/77/UBERON_0005577.md index 96d16c68d4..32e91a5855 100644 --- a/md/UBERON/77/UBERON_0005577.md +++ b/md/UBERON/77/UBERON_0005577.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005577 * *Label* = rhombomere 4 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000782] + * lateral wall rhombomere 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000782 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 4](../../UBERON/11/UBERON_0005511.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005677.md b/md/UBERON/77/UBERON_0005677.md index aef70379ff..bbd1bdbb0e 100644 --- a/md/UBERON/77/UBERON_0005677.md +++ b/md/UBERON/77/UBERON_0005677.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005677 * *Label* = caecum mesentery - * *Definition* = A mesentery that is part of a caecum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a caecum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005777.md b/md/UBERON/77/UBERON_0005777.md index 1cdf3cdf45..5a5952d893 100644 --- a/md/UBERON/77/UBERON_0005777.md +++ b/md/UBERON/77/UBERON_0005777.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005777 * *Label* = glomerular basement membrane - * *Definition* = The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration through the filtration slits between the podocytes, separating the blood on the inside from the filtrate on the outside. It is a fusion of the endothelial cell and podocyte basal laminas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerular_basement_membrane] + * *Definition* = The glomerular basement membrane is the basal laminal portion of the glomerulus which performs the actual filtration through the filtration slits between the podocytes, separating the blood on the inside from the filtrate on the outside. It is a fusion of the endothelial cell and podocyte basal laminas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerular_basement_membrane ] ## Synonyms - * glomerular capillary basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001659] - * glomerular filtration membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005285] - * GBM [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * glomerular capillary basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001659 ] + * glomerular filtration membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005285 ] + * GBM [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001659 * SCTID:243897006 * TAO:0005285 - * UMLS:C0599297 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glomerular_Basement_Membrane] + * UMLS:C0599297 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glomerular_Basement_Membrane ] * Wikipedia:Glomerular_basement_membrane * ZFA:0005285 * http://upload.wikimedia.org/wikipedia/commons/d/de/PhysiologieGlom%C3%A9rulaire.png @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basement membrane of epithelium](../../UBERON/69/UBERON_0005769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0005977.md b/md/UBERON/77/UBERON_0005977.md index a7990cd2f8..893100828d 100644 --- a/md/UBERON/77/UBERON_0005977.md +++ b/md/UBERON/77/UBERON_0005977.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005977 * *Label* = ansiform lobule crus II - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010003] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010003 ] * *Comment* = TODO - check ## Synonyms - * crus I of the ansiform lobule (HVII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081208] - * crus secundum lobuli ansiformis cerebelli [h vii a [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hemispheric lobule viia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081208] - * inferior semilunar lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525] - * inferior semilunar lobule of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525] - * lobulus ansiform crus I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081208] - * lobulus semilunaris inferior cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus semilunaris superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081208] - * posterior inferior lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525] - * second crus of ansiform lobule of cerebellum [h vii a] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525] - * semilunar lobule-2 (inferior) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72525] - * insulae of Calleja [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ISL] + * crus I of the ansiform lobule (HVII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081208 ] + * crus secundum lobuli ansiformis cerebelli [h vii a [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hemispheric lobule viia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081208 ] + * inferior semilunar lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525 ] + * inferior semilunar lobule of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525 ] + * lobulus ansiform crus I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081208 ] + * lobulus semilunaris inferior cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus semilunaris superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081208 ] + * posterior inferior lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525 ] + * second crus of ansiform lobule of cerebellum [h vii a] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525 ] + * semilunar lobule-2 (inferior) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72525 ] + * insulae of Calleja [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ISL ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006077.md b/md/UBERON/77/UBERON_0006077.md index 43ddfb9a3f..5beb20b822 100644 --- a/md/UBERON/77/UBERON_0006077.md +++ b/md/UBERON/77/UBERON_0006077.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006077 * *Label* = subdivision of vertebral column - * *Definition* = A collection of all skeletal elements in some subdivision of the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A collection of all skeletal elements in some subdivision of the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * subdivision of vertebral skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * vertebral column subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16201] + * subdivision of vertebral skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * vertebral column subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16201 ] * vertebral region * vertebral subdivision @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeletal system](../../UBERON/75/UBERON_0000075.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [vertebral column](../../UBERON/30/UBERON_0001130.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006277.md b/md/UBERON/77/UBERON_0006277.md index 0092585051..4e20caf0d4 100644 --- a/md/UBERON/77/UBERON_0006277.md +++ b/md/UBERON/77/UBERON_0006277.md @@ -6,8 +6,8 @@ ## Synonyms - * pleuropericardial canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001497] - * pleuropericardial channel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001497] + * pleuropericardial canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001497 ] + * pleuropericardial channel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001497 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006377.md b/md/UBERON/77/UBERON_0006377.md index 53990af5aa..593be2e245 100644 --- a/md/UBERON/77/UBERON_0006377.md +++ b/md/UBERON/77/UBERON_0006377.md @@ -6,7 +6,7 @@ ## Synonyms - * hypophyseal cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000857] + * hypophyseal cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000857 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006477.md b/md/UBERON/77/UBERON_0006477.md index da00d289e2..a9c6e796ed 100644 --- a/md/UBERON/77/UBERON_0006477.md +++ b/md/UBERON/77/UBERON_0006477.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006477 * *Label* = Brodmann (1909) area 34 - * *Definition* = Brodmann area 34 is a part of the brain. It has been described as part of the entorhinal area. It has been described as part of the superior temporal gyrus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_34] + * *Definition* = Brodmann area 34 is a part of the brain. It has been described as part of the entorhinal area. It has been described as part of the superior temporal gyrus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_34 ] ## Synonyms - * B09-34 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1767] - * BA34 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 34 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1767] - * Brodmann area 34 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68631] - * Brodmann area 34, dorsal entorhinal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1767] - * area 34 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68631] - * area 34 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1767] - * area entorhinalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1767] - * area entorhinalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_34[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal entorhinal area 34 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68631] - * B09-34 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1767[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-34 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1767 ] + * BA34 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 34 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1767 ] + * Brodmann area 34 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68631 ] + * Brodmann area 34, dorsal entorhinal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1767 ] + * area 34 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68631 ] + * area 34 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1767 ] + * area entorhinalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1767 ] + * area entorhinalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_34, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal entorhinal area 34 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68631 ] + * B09-34 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1767, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -25,7 +25,7 @@ * NIF_GrossAnatomy:birnlex_1767 * NeuroNames:2115 * SCTID:384789002 - * UMLS:C1272495 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1767] + * UMLS:C1272495 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1767 ] * Wikipedia:Brodmann_area_34 ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006677.md b/md/UBERON/77/UBERON_0006677.md index f8f0a92aaf..9589911c38 100644 --- a/md/UBERON/77/UBERON_0006677.md +++ b/md/UBERON/77/UBERON_0006677.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006677 * *Label* = surface of epithelium - * *Definition* = An anatomical boundary that adjacent_to a epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical boundary that adjacent_to a epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epithelium surface [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70997] + * epithelium surface [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70997 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [epithelium](../../UBERON/83/UBERON_0000483.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006777.md b/md/UBERON/77/UBERON_0006777.md index 6bece33f96..ff172062f5 100644 --- a/md/UBERON/77/UBERON_0006777.md +++ b/md/UBERON/77/UBERON_0006777.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006777 * *Label* = tectal plate - * *Definition* = embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453] + * *Definition* = embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453 ] * *Comment* = The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) ## Synonyms - * lamina quadrigemina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77488[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * quadrigeminal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77488] + * lamina quadrigemina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77488, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * quadrigeminal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77488 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0006877.md b/md/UBERON/77/UBERON_0006877.md index b54d9d1de8..bd880f5dd4 100644 --- a/md/UBERON/77/UBERON_0006877.md +++ b/md/UBERON/77/UBERON_0006877.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006877 * *Label* = vasculature of liver - * *Definition* = A vasculature that is part of a liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = the EHDAA2 term and the FMA term may not be exact equivalents - check ## Synonyms - * hepatic vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73748] - * liver vascular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003454] + * hepatic vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73748 ] + * liver vascular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003454 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0007177.md b/md/UBERON/77/UBERON_0007177.md index 4ec3185450..f4e6b71f93 100644 --- a/md/UBERON/77/UBERON_0007177.md +++ b/md/UBERON/77/UBERON_0007177.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007177 * *Label* = lamina propria of mucosa of colon - * *Definition* = A lamina propria that is part of a colonic mucosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a colonic mucosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * colonic lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15657] - * lamina propria mucosae of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15657] - * lamina propria of colonic mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15657] - * lamina propria of colonic mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15657] + * colonic lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15657 ] + * lamina propria mucosae of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15657 ] + * lamina propria of colonic mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15657 ] + * lamina propria of colonic mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15657 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colonic mucosa](../../UBERON/17/UBERON_0000317.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0007277.md b/md/UBERON/77/UBERON_0007277.md index 1e72fec684..3f492df541 100644 --- a/md/UBERON/77/UBERON_0007277.md +++ b/md/UBERON/77/UBERON_0007277.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007277 * *Label* = presumptive hindbrain - * *Definition* = The rhombencephalon (or hindbrain) is a developmental categorization of portions of the central nervous system in vertebrates. The rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. In the human embryo eight rhombomeres can be distinguished, from caudal to rostral: Rh7-Rh1 and the isthmus (the most rostral rhombomere). A rare disease of the rhombencephalon, 'rhombencephalosynapsis' is characterized by a missing vermis resulting in a fused cerebellum. Patients generally present with cerebellar ataxia. The caudal rhombencephalon has been generally considered as the initiation site for neural tube closure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhombencephalon] + * *Definition* = The rhombencephalon (or hindbrain) is a developmental categorization of portions of the central nervous system in vertebrates. The rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. In the human embryo eight rhombomeres can be distinguished, from caudal to rostral: Rh7-Rh1 and the isthmus (the most rostral rhombomere). A rare disease of the rhombencephalon, 'rhombencephalosynapsis' is characterized by a missing vermis resulting in a fused cerebellum. Patients generally present with cerebellar ataxia. The caudal rhombencephalon has been generally considered as the initiation site for neural tube closure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhombencephalon ] * *Comment* = TODO - unify naming conventions ## Synonyms - * embryonic rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2118] - * future hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001630] + * embryonic rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2118 ] + * future hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001630 ] ## Cross-references @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The embryonic rhombencephalon can be subdivided in a variable number of transversal swellings called rhombomeres. Rhombomeres Rh7-Rh4 form the myelencephalon that will give the medulla oblongata. Rhombomeres Rh3-Rh1 form the metencephalon that will form the pons and the cerebellum[NPX:PDR]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0007377.md b/md/UBERON/77/UBERON_0007377.md index 1e6f2a3398..8de7ec8754 100644 --- a/md/UBERON/77/UBERON_0007377.md +++ b/md/UBERON/77/UBERON_0007377.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007377 * *Label* = stratum compactum - * *Definition* = Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-040726-12] + * *Definition* = Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-040726-12 ] * *Comment* = connective tissue in the skin is usually diffuse and irregular, although in some species collagen bundles are arranged in a distinct ordered layer in the dermis ## Synonyms - * dermal deep region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001182] + * dermal deep region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001182 ] ## Cross-references @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. Le Guellec et al, 2004.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from collagenous dermal stroma (TAO:0001186)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0007777.md b/md/UBERON/77/UBERON_0007777.md index 1238bccbd6..0049c81989 100644 --- a/md/UBERON/77/UBERON_0007777.md +++ b/md/UBERON/77/UBERON_0007777.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007777 * *Label* = umbilical vein endothelium - * *Definition* = An endothelium that is part of a umbilical vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a umbilical vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [umbilical vein](../../UBERON/66/UBERON_0002066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0008277.md b/md/UBERON/77/UBERON_0008277.md index ffe8c21b14..4fb44f0c63 100644 --- a/md/UBERON/77/UBERON_0008277.md +++ b/md/UBERON/77/UBERON_0008277.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008277 * *Label* = cnida - * *Definition* = A giant secretory organelle that comprises a bulb-shape capsule containing a coiled hollow tubule structure attached to it. A cnida defines the phylum Cnidaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cnida##Structure_and_function] + * *Definition* = A giant secretory organelle that comprises a bulb-shape capsule containing a coiled hollow tubule structure attached to it. A cnida defines the phylum Cnidaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cnida##Structure_and_function ] * *Comment* = Should be moved to GO. WP classifies as organelle but TOLweb says: A cnida therefore is technically not an organelle, but, rather, the most complex secretory product known ## Synonyms - * cnidae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cnidae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0008577.md b/md/UBERON/77/UBERON_0008577.md index 52c9b5259e..e47656f78b 100644 --- a/md/UBERON/77/UBERON_0008577.md +++ b/md/UBERON/77/UBERON_0008577.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008577 * *Label* = vocalis muscle - * *Definition* = The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vocal_muscle] + * *Definition* = The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vocal_muscle ] ## Synonyms - * vocal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46591] + * vocal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46591 ] * vocalis - * musculus vocalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vocal_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus vocalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vocal_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46591 * SCTID:244820007 - * UMLS:C0224181 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vocalis_Muscle] + * UMLS:C0224181 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vocalis_Muscle ] * Wikipedia:Vocal_muscle * http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png * ncithesaurus:Vocalis_Muscle @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0008777.md b/md/UBERON/77/UBERON_0008777.md index e2b0491ae1..9dc522427c 100644 --- a/md/UBERON/77/UBERON_0008777.md +++ b/md/UBERON/77/UBERON_0008777.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008777 * *Label* = hypaxial musclulature - * *Definition* = Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epaxial_and_Hypaxial_muscles] + * *Definition* = Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epaxial_and_Hypaxial_muscles ] * *Comment* = Taxon notes: The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus.[WP] ## Synonyms - * hypaxial muscles [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * hypaxial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003228] + * hypaxial muscles [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * hypaxial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003228 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [hypaxial myotome region](../../UBERON/95/UBERON_0003895.md) and [musculature](../../UBERON/15/UBERON_0001015.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Trunk muscle that lies ventral to the horizontal septum of the vertebrae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0008877.md b/md/UBERON/77/UBERON_0008877.md index 88115c5338..09b6629e6a 100644 --- a/md/UBERON/77/UBERON_0008877.md +++ b/md/UBERON/77/UBERON_0008877.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008877 * *Label* = epidermal-dermal junction - * *Definition* = the multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011159] + * *Definition* = the multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011159 ] ## Synonyms - * dermal-epidermal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70963] + * dermal-epidermal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70963 ] * dermo-epidermal junction - * dermoepidermal junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70963] + * dermoepidermal junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70963 ] * epidermal dermol junction ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0008977.md b/md/UBERON/77/UBERON_0008977.md index 14f2939196..08b5138ce3 100644 --- a/md/UBERON/77/UBERON_0008977.md +++ b/md/UBERON/77/UBERON_0008977.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008977 * *Label* = pes anserinus of tibia - * *Definition* = The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pes_anserinus_%28leg%29] + * *Definition* = The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pes_anserinus_%28leg%29 ] * *Comment* = Editors note: Consider adding muscle insertion site class ## Synonyms - * pes anserinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001507] - * pes anserine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pes_anserinus_%28leg%29] - * pes anserinus of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pes_anserinus_%28leg%29] + * pes anserinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001507 ] + * pes anserine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pes_anserinus_%28leg%29 ] + * pes anserinus of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pes_anserinus_%28leg%29 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009077.md b/md/UBERON/77/UBERON_0009077.md index ed81dc4a1a..d1e54aa160 100644 --- a/md/UBERON/77/UBERON_0009077.md +++ b/md/UBERON/77/UBERON_0009077.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009477.md b/md/UBERON/77/UBERON_0009477.md index cab4817ce2..758af25b2b 100644 --- a/md/UBERON/77/UBERON_0009477.md +++ b/md/UBERON/77/UBERON_0009477.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009477 * *Label* = associated mesenchyme of otic placode - * *Definition* = Mesenchyme that is part of a otic placode. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a otic placode. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [otic placode](../../UBERON/69/UBERON_0003069.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009577.md b/md/UBERON/77/UBERON_0009577.md index c00362ea5f..13d8648bcc 100644 --- a/md/UBERON/77/UBERON_0009577.md +++ b/md/UBERON/77/UBERON_0009577.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009577 * *Label* = metencephalon sulcus limitans - * *Definition* = A sulcus limitans of neural tube that is part of a future metencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sulcus limitans of neural tube that is part of a future metencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [future metencephalon](../../UBERON/92/UBERON_0010092.md) and [sulcus limitans of neural tube](../../UBERON/78/UBERON_0005478.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009777.md b/md/UBERON/77/UBERON_0009777.md index cfe36899c8..d1f48fdb58 100644 --- a/md/UBERON/77/UBERON_0009777.md +++ b/md/UBERON/77/UBERON_0009777.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009777 * *Label* = intermediate reticular nucleus - * *Definition* = A nucleus of brain that is part of a intermediate reticular formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a intermediate reticular formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intermediate reticular formation](../../UBERON/76/UBERON_0009776.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009877.md b/md/UBERON/77/UBERON_0009877.md index f260a49f80..b947f4bc26 100644 --- a/md/UBERON/77/UBERON_0009877.md +++ b/md/UBERON/77/UBERON_0009877.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009877 * *Label* = metapodium region - * *Definition* = Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group. Editors note: considering adding 'acropodial region' ## Synonyms @@ -11,8 +11,8 @@ * metacarpal or metatarsal part of limb * metacarpus/metatarsus region * metapodial segment - * cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * equine cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * equine cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * metacarpus/metatarsus * metapodium @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0009977.md b/md/UBERON/77/UBERON_0009977.md index e77adb6da2..ab62bfffa1 100644 --- a/md/UBERON/77/UBERON_0009977.md +++ b/md/UBERON/77/UBERON_0009977.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009977 * *Label* = natal tooth - * *Definition* = Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.860.700.500] + * *Definition* = Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.860.700.500 ] ## Synonyms - * natal teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1267[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * natal tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1267] + * natal teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1267, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * natal tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1267 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010077.md b/md/UBERON/77/UBERON_0010077.md index 4af36d7e17..11cbea1315 100644 --- a/md/UBERON/77/UBERON_0010077.md +++ b/md/UBERON/77/UBERON_0010077.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010077 * *Label* = cuboidal epithelium - * *Definition* = An epithelium consisting of cuboidal epithelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cuboidal_epithelium] + * *Definition* = An epithelium consisting of cuboidal epithelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cuboidal_epithelium ] * *Comment* = AO notes: in NCIT this is glandular. Editor notes: TODO - coordinate with CL, add cuboidal cell ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references - * UMLS:C0682577 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cuboidal_Epithelium] + * UMLS:C0682577 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cuboidal_Epithelium ] * Wikipedia:Cuboidal_epithelium * ncithesaurus:Cuboidal_Epithelium @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010277.md b/md/UBERON/77/UBERON_0010277.md index eb56dc1f71..503f0a2bf2 100644 --- a/md/UBERON/77/UBERON_0010277.md +++ b/md/UBERON/77/UBERON_0010277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010277 * *Label* = mesocardium - * *Definition* = The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/mesocardium] + * *Definition* = The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/mesocardium ] * *Comment* = Editor notes: consider merging with heart mesentery ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesocardial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010377.md b/md/UBERON/77/UBERON_0010377.md index 4901da50f0..44635f0c44 100644 --- a/md/UBERON/77/UBERON_0010377.md +++ b/md/UBERON/77/UBERON_0010377.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010377 * *Label* = mesenchyme from somatopleure - * *Definition* = Mesenchyme that develops_from a somatopleure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a somatopleure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: the way this class is defined also includes extraembryonic mesenchyme such as the amniotic mesenchyme; in future this may be restricted to embryonic derivatives ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [somatopleure](../../UBERON/74/UBERON_0004874.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010577.md b/md/UBERON/77/UBERON_0010577.md index 8c31ffb8ab..71bad33237 100644 --- a/md/UBERON/77/UBERON_0010577.md +++ b/md/UBERON/77/UBERON_0010577.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010577 * *Label* = manual digit 3 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 3 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 3 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3 mesenchyme](../../UBERON/93/UBERON_0005693.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010677.md b/md/UBERON/77/UBERON_0010677.md index 4df232de71..435aca65f8 100644 --- a/md/UBERON/77/UBERON_0010677.md +++ b/md/UBERON/77/UBERON_0010677.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010677 * *Label* = manual digit 3 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 3 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 3 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3 mesenchyme](../../UBERON/93/UBERON_0005693.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0010977.md b/md/UBERON/77/UBERON_0010977.md index 411329847f..684192b545 100644 --- a/md/UBERON/77/UBERON_0010977.md +++ b/md/UBERON/77/UBERON_0010977.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011177.md b/md/UBERON/77/UBERON_0011177.md index 4bec449590..a1048ef3c5 100644 --- a/md/UBERON/77/UBERON_0011177.md +++ b/md/UBERON/77/UBERON_0011177.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011177 * *Label* = posterior division of bed nuclei of stria terminalis - * *Definition* = The term posterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/CentralDirectory.aspx?ID=2754] + * *Definition* = The term posterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/CentralDirectory.aspx?ID=2754 ] ## Synonyms - * bed nuclei of the stria terminalis, posterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTp] - * posterior nuclei of stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu] - * posterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000930] - * bed nuclei of the stria terminalis posterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTp] - * bed nucleus of stria terminalis posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTp] - * bed nucleus of the stria terminalis posterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTp] - * posterior part of the bed nucleus of the stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTp] + * bed nuclei of the stria terminalis, posterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTp ] + * posterior nuclei of stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu ] + * posterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000930 ] + * bed nuclei of the stria terminalis posterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTp ] + * bed nucleus of stria terminalis posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTp ] + * bed nucleus of the stria terminalis posterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTp ] + * posterior part of the bed nucleus of the stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTp ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011277.md b/md/UBERON/77/UBERON_0011277.md index f70bb89acd..64bbddc831 100644 --- a/md/UBERON/77/UBERON_0011277.md +++ b/md/UBERON/77/UBERON_0011277.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011277 * *Label* = nail of manual digit 5 - * *Definition* = A nail that is part of a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 5 of fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18738] - * little finger nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54341] - * nail of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54341] - * nail plate of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54341] - * nail of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54341] + * claw of digit 5 of fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18738 ] + * little finger nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54341 ] + * nail of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54341 ] + * nail plate of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54341 ] + * nail of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54341 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011377.md b/md/UBERON/77/UBERON_0011377.md index 12bfe4b81d..49348f54f3 100644 --- a/md/UBERON/77/UBERON_0011377.md +++ b/md/UBERON/77/UBERON_0011377.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011377 * *Label* = femorothoracic muscle - * *Definition* = The femorospinal group is made up of the psoas major and iliacus muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://emedicine.medscape.com/article/1899031-overview] + * *Definition* = The femorospinal group is made up of the psoas major and iliacus muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://emedicine.medscape.com/article/1899031-overview ] ## Synonyms - * femorothoracic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002322] + * femorothoracic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002322 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011577.md b/md/UBERON/77/UBERON_0011577.md index 9b457fdcd5..51935dd8d9 100644 --- a/md/UBERON/77/UBERON_0011577.md +++ b/md/UBERON/77/UBERON_0011577.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011577 * *Label* = flexural organ - * *Definition* = a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007071[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=76834&atid=994726] + * *Definition* = a portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007071, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=76834&atid=994726 ] * *Comment* = Taxon notes: may be an ontogenetical remnant of the infundibular organ in cephalochordates. Editor notes: we cannot classify as a secretory circumventricular organ, as this leads to unsatisfiability ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7711 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011577 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011677.md b/md/UBERON/77/UBERON_0011677.md index 152f8b5ecd..a1267f3d82 100644 --- a/md/UBERON/77/UBERON_0011677.md +++ b/md/UBERON/77/UBERON_0011677.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011677 * *Label* = trunk vertebra - * *Definition* = A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes cervical, caudal, sacral (if present). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000006] + * *Definition* = A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes cervical, caudal, sacral (if present). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000006 ] ## Synonyms * thoracolumbar vertebra - * abdominal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263] - * abdominal vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263] - * precaudal vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263] - * precaudal vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * trunk vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263] - * trunk vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000263] + * abdominal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263 ] + * abdominal vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263 ] + * precaudal vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263 ] + * precaudal vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * trunk vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263 ] + * trunk vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000263 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk region of vertebral column](../../UBERON/68/UBERON_0009568.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Post-Weberian vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003.[TAO] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_72066 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011777.md b/md/UBERON/77/UBERON_0011777.md index 4f202b5b60..e0b651b7cf 100644 --- a/md/UBERON/77/UBERON_0011777.md +++ b/md/UBERON/77/UBERON_0011777.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011777 * *Label* = nucleus of spinal cord - * *Definition* = Nucleus of neuraxis which is located within the spinal cord. Example: dorsal nucleus of Clarke, Intermediolateral nucleus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77011] + * *Definition* = Nucleus of neuraxis which is located within the spinal cord. Example: dorsal nucleus of Clarke, Intermediolateral nucleus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77011 ] ## Synonyms - * spinal cord nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77011] + * spinal cord nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77011 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural nucleus](../../UBERON/25/UBERON_0000125.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011877.md b/md/UBERON/77/UBERON_0011877.md index 7c1712cb7e..b7eb272273 100644 --- a/md/UBERON/77/UBERON_0011877.md +++ b/md/UBERON/77/UBERON_0011877.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011877 * *Label* = margin of tongue - * *Definition* = the lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/margin-of-tongue.html] + * *Definition* = the lateral border that separates the dorsum from the inferior surface of the tongue on each side, the two borders meeting anteriorly at the apex.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/margin-of-tongue.html ] ## Synonyms - * margo linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/margin-of-tongue.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tongue margin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54650] + * margo linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/margin-of-tongue.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tongue margin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54650 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011877 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0011977.md b/md/UBERON/77/UBERON_0011977.md index e57da82cda..6b5c5999f5 100644 --- a/md/UBERON/77/UBERON_0011977.md +++ b/md/UBERON/77/UBERON_0011977.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011977 * *Label* = epiphysis of proximal phalanx of manus - * *Definition* = An epiphysis that is part of a proximal phalanx of manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a proximal phalanx of manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal phalanx of manus](../../UBERON/34/UBERON_0002234.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011977 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0012177.md b/md/UBERON/77/UBERON_0012177.md index 1b64f87d28..8e69e3edb6 100644 --- a/md/UBERON/77/UBERON_0012177.md +++ b/md/UBERON/77/UBERON_0012177.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012177 * *Label* = skin apocrine gland - * *Definition* = An apocrine gland that is part of a skin of body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An apocrine gland that is part of a skin of body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [apocrine gland](../../UBERON/74/UBERON_0008974.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skin of body](../../UBERON/97/UBERON_0002097.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0012377.md b/md/UBERON/77/UBERON_0012377.md index ac4b5a238b..273228c5f1 100644 --- a/md/UBERON/77/UBERON_0012377.md +++ b/md/UBERON/77/UBERON_0012377.md @@ -6,10 +6,10 @@ ## Synonyms - * muscularis externa of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14951] - * jejunal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscularis propria of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * smooth muscle of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * muscularis externa of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14951 ] + * jejunal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscularis propria of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * smooth muscle of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0012477.md b/md/UBERON/77/UBERON_0012477.md index c13949cb14..80e41a2bc6 100644 --- a/md/UBERON/77/UBERON_0012477.md +++ b/md/UBERON/77/UBERON_0012477.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012477 * *Label* = dorsal part of neck - * *Definition* = The back of the neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000957] + * *Definition* = The back of the neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000957 ] ## Synonyms - * back of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] + * back of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] * nape of neck - * neck back [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * nucha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * nuchal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * posterior cervical region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * posterior neck region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * posterior part of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24189] - * regio cervicalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * nape [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000957] + * neck back [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * nucha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * nuchal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * posterior cervical region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * posterior neck region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * posterior part of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24189 ] + * regio cervicalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * nape [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000957 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = nuchal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0013177.md b/md/UBERON/77/UBERON_0013177.md index ce128a81dc..b39ac67d70 100644 --- a/md/UBERON/77/UBERON_0013177.md +++ b/md/UBERON/77/UBERON_0013177.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal bursae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dorsal bursae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * fatty dorsal bursa ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013177 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0013277.md b/md/UBERON/77/UBERON_0013277.md index e445945e5c..4c76b0329e 100644 --- a/md/UBERON/77/UBERON_0013277.md +++ b/md/UBERON/77/UBERON_0013277.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013277 * *Label* = remnant of processus vaginalis - * *Definition* = incompletely obliterated remnants of the vaginal process of the peritoneum remaining in the spermatic cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=98550] + * *Definition* = incompletely obliterated remnants of the vaginal process of the peritoneum remaining in the spermatic cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=98550 ] ## Synonyms - * processus vaginalis vestige [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77300] - * vestige of processus vaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77300] + * processus vaginalis vestige [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77300 ] + * vestige of processus vaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77300 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0013477.md b/md/UBERON/77/UBERON_0013477.md index f70808d4c1..638c4c8ccf 100644 --- a/md/UBERON/77/UBERON_0013477.md +++ b/md/UBERON/77/UBERON_0013477.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013477 * *Label* = blowhole - * *Definition* = A hole at the top of a cetacean's head through which the animal breathes air [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blowhole_(anatomy)] + * *Definition* = A hole at the top of a cetacean's head through which the animal breathes air [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blowhole_(anatomy) ] * *Comment* = Taxon notes: Baleen whales have two blowholes positioned in a V-shape while toothed whales have only one blowhole. The blowhole of a sperm whale, a toothed whale, is located left of centre in the frontal area of the snout, and is actually its left nostril, while the right nostril lacks an opening to the surface despite the fact that its nasal passage is otherwise well developed. ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0013677.md b/md/UBERON/77/UBERON_0013677.md index 4afc314575..e0a6363113 100644 --- a/md/UBERON/77/UBERON_0013677.md +++ b/md/UBERON/77/UBERON_0013677.md @@ -6,7 +6,7 @@ ## Synonyms - * serrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * serrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * ctenactinial serra * ctenactinium serra @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0013777.md b/md/UBERON/77/UBERON_0013777.md index 923aa72ac2..2e94389ab4 100644 --- a/md/UBERON/77/UBERON_0013777.md +++ b/md/UBERON/77/UBERON_0013777.md @@ -6,7 +6,7 @@ ## Synonyms - * palmar skin of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38301] + * palmar skin of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38301 ] * skin of palmar area of hand ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [palmar part of manus](../../UBERON/78/UBERON_0008878.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0014277.md b/md/UBERON/77/UBERON_0014277.md index a80eb47ee8..f6b0e89805 100644 --- a/md/UBERON/77/UBERON_0014277.md +++ b/md/UBERON/77/UBERON_0014277.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014277 * *Label* = piriform cortex layer 1 - * *Definition* = Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] + * *Definition* = Most superficial of 3 cytoarchitecturally defined layers of the piriform cortex, characterized by few neuronal cell bodies. It has been divided into a superficial part and a deep part. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] ## Synonyms - * layer 1 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * piriform cortex layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * piriform cortex plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * plexiform layer of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * pyriform cortex layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * layer 1 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * piriform cortex plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * plexiform layer of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] - * pyriform cortex layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091003] + * layer 1 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * piriform cortex layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * piriform cortex plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * plexiform layer of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * pyriform cortex layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * layer 1 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * piriform cortex plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * plexiform layer of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] + * pyriform cortex layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091003 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014277 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0014377.md b/md/UBERON/77/UBERON_0014377.md index ec62f43375..58fb692dc4 100644 --- a/md/UBERON/77/UBERON_0014377.md +++ b/md/UBERON/77/UBERON_0014377.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014377 * *Label* = hypothenar muscle - * *Definition* = Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothenar_eminence] + * *Definition* = Hypothenar refers to a group of three muscles of the palm that control the motion of the little finger. The three muscles are: Abductor digiti minimi Flexor digiti minimi Opponens digiti minimi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothenar_eminence ] ## Synonyms - * hypothenar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothenar_eminence] - * hypothenar muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothenar_eminence] - * hypothenar muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothenar_eminence] + * hypothenar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothenar_eminence ] + * hypothenar muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothenar_eminence ] + * hypothenar muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothenar_eminence ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014377 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0014477.md b/md/UBERON/77/UBERON_0014477.md index 0cde476a4c..74a733c99a 100644 --- a/md/UBERON/77/UBERON_0014477.md +++ b/md/UBERON/77/UBERON_0014477.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014477 * *Label* = thoracic skeleton - * *Definition* = Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rib_cage[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeletal system that consists of all skeletal elements in the thoracic region of the trunk. In most vertebrates this is the rib cage and sternum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rib_cage, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * skeleton of thorax * thoracic part of axial skeleton - * thoracic skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002013] + * thoracic skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002013 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014477 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0014677.md b/md/UBERON/77/UBERON_0014677.md index cf1a08bea1..f45b924232 100644 --- a/md/UBERON/77/UBERON_0014677.md +++ b/md/UBERON/77/UBERON_0014677.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0014777.md b/md/UBERON/77/UBERON_0014777.md index 94bc54eac0..0256894bf3 100644 --- a/md/UBERON/77/UBERON_0014777.md +++ b/md/UBERON/77/UBERON_0014777.md @@ -8,8 +8,8 @@ ## Synonyms * spinal cord metameric segment - * spinal neuromeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001332[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001332] + * spinal neuromeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001332, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001332 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromere](../../UBERON/31/UBERON_0004731.md) and [part_of](../../BFO/50/BFO_0000050.md) some [future spinal cord](../../UBERON/41/UBERON_0006241.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014777 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_0015077.md b/md/UBERON/77/UBERON_0015077.md index b1ff201ba4..af9a38e296 100644 --- a/md/UBERON/77/UBERON_0015077.md +++ b/md/UBERON/77/UBERON_0015077.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [centrale endochondral element](../../UBERON/67/UBERON_0015067.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015077 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2000177.md b/md/UBERON/77/UBERON_2000177.md index 11041c505d..9b52ce262b 100644 --- a/md/UBERON/77/UBERON_2000177.md +++ b/md/UBERON/77/UBERON_2000177.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2000677.md b/md/UBERON/77/UBERON_2000677.md index ba7741b78c..48491d7e48 100644 --- a/md/UBERON/77/UBERON_2000677.md +++ b/md/UBERON/77/UBERON_2000677.md @@ -6,7 +6,7 @@ ## Synonyms - * segmental intercostal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000677[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * segmental intercostal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000677, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2000677 + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2000777.md b/md/UBERON/77/UBERON_2000777.md index bc35b48a97..c42811b7b5 100644 --- a/md/UBERON/77/UBERON_2000777.md +++ b/md/UBERON/77/UBERON_2000777.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000777 * *Label* = hypaxial region somite 9 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2000877.md b/md/UBERON/77/UBERON_2000877.md index ac95eed0a0..d06f1e81ce 100644 --- a/md/UBERON/77/UBERON_2000877.md +++ b/md/UBERON/77/UBERON_2000877.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 14 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000877[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 14 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000877, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_2000977.md b/md/UBERON/77/UBERON_2000977.md index 7f8d6f4f36..cb0e330f27 100644 --- a/md/UBERON/77/UBERON_2000977.md +++ b/md/UBERON/77/UBERON_2000977.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000977 * *Label* = somite 19 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 19 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001277.md b/md/UBERON/77/UBERON_2001277.md index e04933f8f6..120428a43b 100644 --- a/md/UBERON/77/UBERON_2001277.md +++ b/md/UBERON/77/UBERON_2001277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001277 * *Label* = anterior chamber swim bladder - * *Definition* = The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001577.md b/md/UBERON/77/UBERON_2001577.md index b7e6e2433f..4a44fbf765 100644 --- a/md/UBERON/77/UBERON_2001577.md +++ b/md/UBERON/77/UBERON_2001577.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001577 * *Label* = premaxilla ascending process - * *Definition* = Process of the premaxilla that extends posteriorly and overlays the mesethmoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Process of the premaxilla that extends posteriorly and overlays the mesethmoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001677.md b/md/UBERON/77/UBERON_2001677.md index d7f1120197..fe9f217a6d 100644 --- a/md/UBERON/77/UBERON_2001677.md +++ b/md/UBERON/77/UBERON_2001677.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001677 * *Label* = mesethmoid-nasal joint - * *Definition* = Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [mesethmoid bone](../../UBERON/38/UBERON_0011238.md) and [core#connects](../../ts/core#connects.md) some [nasal bone](../../UBERON/81/UBERON_0001681.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001777.md b/md/UBERON/77/UBERON_2001777.md index ad3b035e60..9646649958 100644 --- a/md/UBERON/77/UBERON_2001777.md +++ b/md/UBERON/77/UBERON_2001777.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001877.md b/md/UBERON/77/UBERON_2001877.md index bf32809afe..16871cfc4f 100644 --- a/md/UBERON/77/UBERON_2001877.md +++ b/md/UBERON/77/UBERON_2001877.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001877 * *Label* = neural arch 1 - * *Definition* = Neural arch that is the anteriormost neural arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural arch that is the anteriormost neural arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2001977.md b/md/UBERON/77/UBERON_2001977.md index cdaa0a1f25..6caa387b5b 100644 --- a/md/UBERON/77/UBERON_2001977.md +++ b/md/UBERON/77/UBERON_2001977.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001977 * *Label* = pad - * *Definition* = Surface structure that is a portion of the integument thickened relative to surrounding area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a portion of the integument thickened relative to surrounding area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pads [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001977[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * pads [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001977, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2002077.md b/md/UBERON/77/UBERON_2002077.md index 42c6b77806..c503636d1a 100644 --- a/md/UBERON/77/UBERON_2002077.md +++ b/md/UBERON/77/UBERON_2002077.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002077 * *Label* = lateropterygium - * *Definition* = Bone that is attached or adjacent to lateral margin of basipterygium and anterior to pelvic fin lepidotrichium 1. The lateropterygium is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bone that is attached or adjacent to lateral margin of basipterygium and anterior to pelvic fin lepidotrichium 1. The lateropterygium is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The lateropterygium is present only in a few teleostean subgroups, e.g., some siluriforms. ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2002277.md b/md/UBERON/77/UBERON_2002277.md index cdc11cfdbd..e5ae67660f 100644 --- a/md/UBERON/77/UBERON_2002277.md +++ b/md/UBERON/77/UBERON_2002277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002277 * *Label* = pectoral fin distal radial bone 1 - * *Definition* = pectoral fin distal radial 1 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 1 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin distal radial element 1](../../UBERON/77/UBERON_2102277.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2005177.md b/md/UBERON/77/UBERON_2005177.md index 5d38a57006..05797b5628 100644 --- a/md/UBERON/77/UBERON_2005177.md +++ b/md/UBERON/77/UBERON_2005177.md @@ -7,8 +7,8 @@ ## Synonyms - * ventral longitudinal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005177] - * V2b interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005177] + * ventral longitudinal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005177 ] + * V2b interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005177 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_2005377.md b/md/UBERON/77/UBERON_2005377.md index f882375929..7485a7ef9f 100644 --- a/md/UBERON/77/UBERON_2005377.md +++ b/md/UBERON/77/UBERON_2005377.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005377 * *Label* = dorsal fin distal radial bone 6 - * *Definition* = dorsal fin distal radial 6 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 6 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 6](../../UBERON/77/UBERON_2105377.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2102277.md b/md/UBERON/77/UBERON_2102277.md index 9f84a413c0..ef6663e253 100644 --- a/md/UBERON/77/UBERON_2102277.md +++ b/md/UBERON/77/UBERON_2102277.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2105377.md b/md/UBERON/77/UBERON_2105377.md index f5ea954b06..b7e8a42138 100644 --- a/md/UBERON/77/UBERON_2105377.md +++ b/md/UBERON/77/UBERON_2105377.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 6](../../UBERON/69/UBERON_2005369.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2202277.md b/md/UBERON/77/UBERON_2202277.md index abc9168ef5..03c38b2fac 100644 --- a/md/UBERON/77/UBERON_2202277.md +++ b/md/UBERON/77/UBERON_2202277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202277 * *Label* = pectoral fin distal radial cartilage 1 - * *Definition* = pectoral fin distal radial 1 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 1 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin distal radial element 1](../../UBERON/77/UBERON_2102277.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_2205377.md b/md/UBERON/77/UBERON_2205377.md index c2ab5206c1..07ae75a4db 100644 --- a/md/UBERON/77/UBERON_2205377.md +++ b/md/UBERON/77/UBERON_2205377.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205377 * *Label* = dorsal fin distal radial cartilage 6 - * *Definition* = dorsal fin distal radial 6 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 6 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 6](../../UBERON/77/UBERON_2105377.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000177.md b/md/UBERON/77/UBERON_3000177.md index b6a3038f95..3ad4890528 100644 --- a/md/UBERON/77/UBERON_3000177.md +++ b/md/UBERON/77/UBERON_3000177.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000477.md b/md/UBERON/77/UBERON_3000477.md index 8f48248561..dd0d4d43c4 100644 --- a/md/UBERON/77/UBERON_3000477.md +++ b/md/UBERON/77/UBERON_3000477.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000677.md b/md/UBERON/77/UBERON_3000677.md index 8390f8f957..66f8e74b9b 100644 --- a/md/UBERON/77/UBERON_3000677.md +++ b/md/UBERON/77/UBERON_3000677.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000777.md b/md/UBERON/77/UBERON_3000777.md index 5c7bc44298..61ad865157 100644 --- a/md/UBERON/77/UBERON_3000777.md +++ b/md/UBERON/77/UBERON_3000777.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000777 * *Label* = epicoracoid horn - * *Definition* = A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000877.md b/md/UBERON/77/UBERON_3000877.md index 658eb3a375..d3d9d5ee4d 100644 --- a/md/UBERON/77/UBERON_3000877.md +++ b/md/UBERON/77/UBERON_3000877.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000877 * *Label* = intumescentia bilateralis inferior - * *Definition* = Small protuberance on the ischium, located close to its posteroventral margin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small protuberance on the ischium, located close to its posteroventral margin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3000977.md b/md/UBERON/77/UBERON_3000977.md index 0d9716adad..7a9beb5dd1 100644 --- a/md/UBERON/77/UBERON_3000977.md +++ b/md/UBERON/77/UBERON_3000977.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000977 * *Label* = body external integument structure - * *Definition* = Dermal, epidermal, glandular and pigment structures of the body integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dermal, epidermal, glandular and pigment structures of the body integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3010177.md b/md/UBERON/77/UBERON_3010177.md index a529363d6f..42ec1a18ba 100644 --- a/md/UBERON/77/UBERON_3010177.md +++ b/md/UBERON/77/UBERON_3010177.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_3010277.md b/md/UBERON/77/UBERON_3010277.md index 3d3461241f..0ec5d5b24d 100644 --- a/md/UBERON/77/UBERON_3010277.md +++ b/md/UBERON/77/UBERON_3010277.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010277 * *Label* = obsolete tip - * *Definition* = Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_3010377.md b/md/UBERON/77/UBERON_3010377.md index 1b4b22cd33..0fee0452c2 100644 --- a/md/UBERON/77/UBERON_3010377.md +++ b/md/UBERON/77/UBERON_3010377.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_4000077.md b/md/UBERON/77/UBERON_4000077.md index e4f49271d1..4d2c1ed5d7 100644 --- a/md/UBERON/77/UBERON_4000077.md +++ b/md/UBERON/77/UBERON_4000077.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_4000177.md b/md/UBERON/77/UBERON_4000177.md index ea70a7fc32..24f4d0bb24 100644 --- a/md/UBERON/77/UBERON_4000177.md +++ b/md/UBERON/77/UBERON_4000177.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000177 * *Label* = dorsal fin lepidotrichium - * *Definition* = Lepidotrichium that is part of the dorsal fin skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Lepidotrichium that is part of the dorsal fin skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * dorsal fin lepidotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000177[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * dorsal fin ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000177] + * dorsal fin lepidotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000177, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * dorsal fin ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000177 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lepidotrichium](../../UBERON/72/UBERON_4000172.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin](../../UBERON/97/UBERON_0003097.md) ## Other Logical Axioms @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/77/UBERON_4200077.md b/md/UBERON/77/UBERON_4200077.md index 36355f4981..f843006f8b 100644 --- a/md/UBERON/77/UBERON_4200077.md +++ b/md/UBERON/77/UBERON_4200077.md @@ -26,8 +26,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/77/UBERON_4200177.md b/md/UBERON/77/UBERON_4200177.md index e88de0e67b..e2469321de 100644 --- a/md/UBERON/77/UBERON_4200177.md +++ b/md/UBERON/77/UBERON_4200177.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0000078.md b/md/UBERON/78/UBERON_0000078.md index beb1a95d74..9d7b2a12d3 100644 --- a/md/UBERON/78/UBERON_0000078.md +++ b/md/UBERON/78/UBERON_0000078.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000078 * *Label* = mixed ectoderm/mesoderm/endoderm-derived structure - * *Definition* = An anatomical structure that develops from the ectoderm, mesoderm and endoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An anatomical structure that develops from the ectoderm, mesoderm and endoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [develops from](../../RO/02/RO_0002202.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [develops from](../../RO/02/RO_0002202.md) some [mesoderm](../../UBERON/26/UBERON_0000926.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0000178.md b/md/UBERON/78/UBERON_0000178.md index 00a4a15068..ea2ae7cc10 100644 --- a/md/UBERON/78/UBERON_0000178.md +++ b/md/UBERON/78/UBERON_0000178.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000178 * *Label* = blood - * *Definition* = Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9670[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood] + * *Definition* = Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9670, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood ] ## Synonyms * portion of blood * vertebrate blood - * whole blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000089] + * whole blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000089 ] ## Cross-references @@ -29,7 +29,7 @@ * MIAA:0000315 * OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA * TAO:0000007 - * UMLS:C0005767 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blood] + * UMLS:C0005767 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blood ] * VHOG:0000224 * Wikipedia:Blood * XAO:0000124 @@ -63,8 +63,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0000378.md b/md/UBERON/78/UBERON_0000378.md index 9feb9074ad..1768b3197a 100644 --- a/md/UBERON/78/UBERON_0000378.md +++ b/md/UBERON/78/UBERON_0000378.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000378 * *Label* = tongue muscle - * *Definition* = the muscular portion of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004136[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_tongue] + * *Definition* = the muscular portion of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004136, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_tongue ] ## Synonyms - * muscle of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46689] - * muscle organ of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * musculi linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscle of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46689 ] + * muscle organ of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * musculi linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0001386 * FMA:46689 * SCTID:244781004 - * UMLS:C0448325 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tongue_Muscle] + * UMLS:C0448325 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tongue_Muscle ] * Wikipedia:Muscles_of_tongue * http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png * ncithesaurus:Tongue_Muscle @@ -35,16 +35,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [attaches_to_part_of](../../core#attaches/of/core#attaches_to_part_of.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) + * [extrinsic muscle of tongue](../../UBERON/75/UBERON_0001575.md)or[intrinsic muscle of tongue](../../UBERON/76/UBERON_0001576.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0000478.md b/md/UBERON/78/UBERON_0000478.md index c2f029d39c..692e5518f3 100644 --- a/md/UBERON/78/UBERON_0000478.md +++ b/md/UBERON/78/UBERON_0000478.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000478 * *Label* = extraembryonic structure - * *Definition* = A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:DOS[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://cedar.bio.indiana.edu/trac/env/ontologies/ticket/279] + * *Definition* = A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:DOS, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://cedar.bio.indiana.edu/trac/env/ontologies/ticket/279 ] * *Comment* = see also conceptus extraembryonic component in EHDAA2. Note that the FBbt class is *not* placed here until the tracker issue is resolved. ## Synonyms @@ -27,7 +27,7 @@ * SCTID:314908006 * TAO:0000020 * TGMA:0001843 - * UMLS:C1282438 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extraembryonic_Structure] + * UMLS:C1282438 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extraembryonic_Structure ] * VHOG:0000292 * XAO:0004005 * ZFA:0000020 @@ -46,7 +46,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [embryonic structure](../../UBERON/50/UBERON_0002050.md) and [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) ## Other Logical Axioms @@ -54,9 +54,10 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000478 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/FBbt_00005835 +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_0000978.md b/md/UBERON/78/UBERON_0000978.md index 96b7fe4914..f1be09254d 100644 --- a/md/UBERON/78/UBERON_0000978.md +++ b/md/UBERON/78/UBERON_0000978.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000978 * *Label* = leg - * *Definition* = The portion of the hindlimb that contains both the stylopod and zeugopod. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Leg#Limb] + * *Definition* = The portion of the hindlimb that contains both the stylopod and zeugopod. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Leg#Limb ] * *Comment* = The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot ## Synonyms * tetrapod leg - * lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.378.610] + * lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.378.610 ] ## Cross-references @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001078.md b/md/UBERON/78/UBERON_0001078.md index 6812c56932..adea2434c2 100644 --- a/md/UBERON/78/UBERON_0001078.md +++ b/md/UBERON/78/UBERON_0001078.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001078 * *Label* = pedicle of vertebra - * *Definition* = The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicle_of_vertebral_arch] + * *Definition* = The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicle_of_vertebral_arch ] ## Synonyms - * pedicle of vertebral arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11950] - * pediculus arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vertebral pedicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:11950] + * pedicle of vertebral arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11950 ] + * pediculus arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vertebral pedicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:11950 ] * pedicle - * pediculus arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicle_of_vertebral_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radix arcus vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pedicle_of_vertebral_arch[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pediculus arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicle_of_vertebral_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radix arcus vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pedicle_of_vertebral_arch, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001458 * OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA * SCTID:277422007 - * UMLS:C0223080 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pedicle_of_Vertebral_Arch] + * UMLS:C0223080 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pedicle_of_Vertebral_Arch ] * Wikipedia:Pedicle_of_vertebral_arch * http://upload.wikimedia.org/wikipedia/commons/d/d0/Pediculusarcusvertebrae.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001178.md b/md/UBERON/78/UBERON_0001178.md index a636178503..4a92be78b1 100644 --- a/md/UBERON/78/UBERON_0001178.md +++ b/md/UBERON/78/UBERON_0001178.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001178 * *Label* = visceral peritoneum - * *Definition* = The peritoneum that covers the external surfaces of most abdominal organs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Visceral_peritoneum[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The peritoneum that covers the external surfaces of most abdominal organs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Visceral_peritoneum, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001278.md b/md/UBERON/78/UBERON_0001278.md index 72cd5eb1e3..dc10a49fed 100644 --- a/md/UBERON/78/UBERON_0001278.md +++ b/md/UBERON/78/UBERON_0001278.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001278 * *Label* = epithelium of large intestine - * *Definition* = An epithelium that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * epithelial tissue of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epithelial tissue of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * large intestinal epithelium - * large intestine epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * large intestine epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * large intestine epithelium ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001378.md b/md/UBERON/78/UBERON_0001378.md index b33c7ac829..2c203d9bdc 100644 --- a/md/UBERON/78/UBERON_0001378.md +++ b/md/UBERON/78/UBERON_0001378.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001378 * *Label* = rectus femoris - * *Definition* = The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_femoris_muscle] + * *Definition* = The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_femoris_muscle ] ## Synonyms @@ -15,7 +15,7 @@ * FMA:22430 * MA:0002365 * SCTID:181679006 - * UMLS:C0584894 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rectus_Femoris] + * UMLS:C0584894 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rectus_Femoris ] * Wikipedia:Rectus_femoris_muscle * http://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001478.md b/md/UBERON/78/UBERON_0001478.md index 5df0329331..246d8756b0 100644 --- a/md/UBERON/78/UBERON_0001478.md +++ b/md/UBERON/78/UBERON_0001478.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001478 * *Label* = teres major muscle - * *Definition* = Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Teres_major_muscle] + * *Definition* = Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Teres_major_muscle ] ## Synonyms - * teres major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002392] - * musculus teres major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Teres_major_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * teres major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002392 ] + * musculus teres major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Teres_major_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0002392 * OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA * SCTID:277444002 - * UMLS:C0224232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Teres_Major_Muscle] + * UMLS:C0224232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Teres_Major_Muscle ] * VHOG:0000750 * Wikipedia:Teres_major_muscle * http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001578.md b/md/UBERON/78/UBERON_0001578.md index 07cdd7f4cb..0043ffe513 100644 --- a/md/UBERON/78/UBERON_0001578.md +++ b/md/UBERON/78/UBERON_0001578.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001578 * *Label* = orbicularis oculi - * *Definition* = A circumorbital muscle in the face that closes the eyelid[HP]. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebr, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raph. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oculi_muscle] + * *Definition* = A circumorbital muscle in the face that closes the eyelid[HP]. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebr, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raph. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oculi_muscle ] ## Synonyms - * orbicularis oculi muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oculi_muscle] - * musculus orbicularis oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oculi_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tensor tarsi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbicularis_oculi_muscle] + * orbicularis oculi muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oculi_muscle ] + * musculus orbicularis oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oculi_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tensor tarsi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbicularis_oculi_muscle ] ## Cross-references * FMA:46779 * MA:0001254 * SCTID:244726006 - * UMLS:C0224122 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbicularis_Oculi] + * UMLS:C0224122 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbicularis_Oculi ] * Wikipedia:Orbicularis_oculi_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001678.md b/md/UBERON/78/UBERON_0001678.md index e9e03ddf9c..2b86ce9496 100644 --- a/md/UBERON/78/UBERON_0001678.md +++ b/md/UBERON/78/UBERON_0001678.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001678 * *Label* = temporal bone - * *Definition* = The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_bone] + * *Definition* = The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_bone ] * *Comment* = The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part[WP]. AO notes: Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA. Taxon notes: fusion of squamosal + angular (tympanic annulus) [derm.] + petrosal (prootic + opisthotic)[chond.] + styloid process[splanc.] // In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone ## Synonyms - * os temporale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * os temporale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A02.835.232.781.885 * OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA * SCTID:181795004 - * UMLS:C0039484 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Bone] + * UMLS:C0039484 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Bone ] * VHOG:0000800 * Wikipedia:Temporal_bone * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg @@ -36,9 +36,9 @@ * [facial bone](../../UBERON/62/UBERON_0003462.md) * [pneumatized bone](../../UBERON/93/UBERON_0008193.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [chondrocranium](../../UBERON/41/UBERON_0002241.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) * [in_lateral_side_of](../../BSPO/26/BSPO_0000126.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) ## Equivalencies @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001778.md b/md/UBERON/78/UBERON_0001778.md index a7c0839d89..5f31d6df81 100644 --- a/md/UBERON/78/UBERON_0001778.md +++ b/md/UBERON/78/UBERON_0001778.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001778 * *Label* = ciliary epithelium - * *Definition* = A double layer covering the ciliary body that produces aqueous humor. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ciliary_body#Ciliary_epithelium] + * *Definition* = A double layer covering the ciliary body that produces aqueous humor. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ciliary_body#Ciliary_epithelium ] ## Synonyms - * ciliary body epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58464] - * epithelium of ciliary body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58464] + * ciliary body epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58464 ] + * epithelium of ciliary body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58464 ] * ocular ciliary epithelium ## Cross-references @@ -18,7 +18,7 @@ * FMA:58464 * MA:0001238 * SCTID:280870004 - * UMLS:C0459736 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ciliary_Epithelium] + * UMLS:C0459736 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ciliary_Epithelium ] * Wikipedia:Ciliary_body#Ciliary_epithelium * ncithesaurus:Ciliary_Epithelium @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ciliary body](../../UBERON/75/UBERON_0001775.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001878.md b/md/UBERON/78/UBERON_0001878.md index dbf5da8970..e7ff057012 100644 --- a/md/UBERON/78/UBERON_0001878.md +++ b/md/UBERON/78/UBERON_0001878.md @@ -7,10 +7,10 @@ ## Synonyms - * nucleus septofibrialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_730] + * nucleus septofibrialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_730 ] * scattered nucleus of the septum - * nucleus septalis fimbrialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:264[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus septofimbrialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:264] + * nucleus septalis fimbrialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:264, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus septofimbrialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:264 ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:61881 * MA:0000938 * NIF_GrossAnatomy:birnlex_730 - * NeuroNames:264 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_730] - * UMLS:C0694603 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_730] + * NeuroNames:264 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_730 ] + * UMLS:C0694603 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_730 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0001978.md b/md/UBERON/78/UBERON_0001978.md index 90d926595d..9df4547b73 100644 --- a/md/UBERON/78/UBERON_0001978.md +++ b/md/UBERON/78/UBERON_0001978.md @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002078.md b/md/UBERON/78/UBERON_0002078.md index d2deb0c5b7..1f06146b34 100644 --- a/md/UBERON/78/UBERON_0002078.md +++ b/md/UBERON/78/UBERON_0002078.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002078 * *Label* = right cardiac atrium - * *Definition* = A cardiac atrium that is in the left side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrium] + * *Definition* = A cardiac atrium that is in the left side of the heart. It receives deoxygenated blood. In mammals, this comes from the superior and inferior vena cava and the coronary sinus, and pumps it into the right ventricle through the tricuspid valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrium ] ## Synonyms * cardiac right atrium - * heart right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000075] - * right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000328] + * heart right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000075 ] + * right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000328 ] * right atrium of heart * right cardiac atrium - * atrium dextrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_atrium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * atrium dextrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_atrium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw * SCTID:244383003 - * UMLS:C0225844 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Atrium] + * UMLS:C0225844 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Atrium ] * VHOG:0000328 * Wikipedia:Right_atrium * XAO:0003192 @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac atrium](../../UBERON/81/UBERON_0002081.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002178.md b/md/UBERON/78/UBERON_0002178.md index 43b2e2782f..331d20fda1 100644 --- a/md/UBERON/78/UBERON_0002178.md +++ b/md/UBERON/78/UBERON_0002178.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002178 * *Label* = left main bronchus - * *Definition* = The main bronchus on the left side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_main_bronchus] + * *Definition* = The main bronchus on the left side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_main_bronchus ] * *Comment* = Divides into 2 lobar bronchi in humans[ISBN10:0123813611] ## Synonyms * left major bronchus - * left primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_main_bronchus] - * left principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_main_bronchus] - * bronchus principalis sinister [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_main_bronchus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * left primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_main_bronchus ] + * left principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_main_bronchus ] + * bronchus principalis sinister [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_main_bronchus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * left bronchus ## Cross-references @@ -19,7 +19,7 @@ * FMA:7396 * MA:0001843 * SCTID:361959008 - * UMLS:C0225630 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Main_Bronchus] + * UMLS:C0225630 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Main_Bronchus ] * Wikipedia:Left_main_bronchus * http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [left lung lobe](../../UBERON/51/UBERON_0008951.md) and [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002278.md b/md/UBERON/78/UBERON_0002278.md index 4c547fd328..7fd65de7f8 100644 --- a/md/UBERON/78/UBERON_0002278.md +++ b/md/UBERON/78/UBERON_0002278.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002278 * *Label* = perilymphatic space - * *Definition* = The fluid-filled space separating the membranous from the osseous labyrinth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = The fluid-filled space separating the membranous from the osseous labyrinth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002378.md b/md/UBERON/78/UBERON_0002378.md index 6e98a2326a..d86992562d 100644 --- a/md/UBERON/78/UBERON_0002378.md +++ b/md/UBERON/78/UBERON_0002378.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002378 * *Label* = muscle of abdomen - * *Definition* = Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_muscle] + * *Definition* = Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_muscle ] ## Synonyms * abdomen muscle - * abdomen muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * abdominal muscle * abdominal wall muscle - * muscle organ of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.633.567.050 * OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA * SCTID:361352008 - * UMLS:C0000739 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abdominal_Muscle] + * UMLS:C0000739 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abdominal_Muscle ] * Wikipedia:Abdominal_muscle * ncithesaurus:Abdominal_Muscle @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002478.md b/md/UBERON/78/UBERON_0002478.md index 8c6146edb3..27581e0c65 100644 --- a/md/UBERON/78/UBERON_0002478.md +++ b/md/UBERON/78/UBERON_0002478.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002478 * *Label* = orbitosphenoid - * *Definition* = One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_wing_of_sphenoid_bone] + * *Definition* = One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_wing_of_sphenoid_bone ] ## Synonyms - * ala minor (os sphenoidale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52869] - * conchosphnocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000253] - * ingrassia's process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52869] - * lesser wing of sphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52869] - * lesser wing of sphenoidal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52869] - * orbito-sphnocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000253] - * orbitosphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * al? parv? [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_wing_of_sphenoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lesser wing of sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002773] + * ala minor (os sphenoidale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52869 ] + * conchosphnocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000253 ] + * ingrassia's process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52869 ] + * lesser wing of sphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52869 ] + * lesser wing of sphenoidal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52869 ] + * orbito-sphnocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000253 ] + * orbitosphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * al? parv? [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_wing_of_sphenoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lesser wing of sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002773 ] ## Cross-references @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [orbitosphenoid endochondral element](../../UBERON/59/UBERON_0015059.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002578.md b/md/UBERON/78/UBERON_0002578.md index 73be542ce4..afe872f7d4 100644 --- a/md/UBERON/78/UBERON_0002578.md +++ b/md/UBERON/78/UBERON_0002578.md @@ -6,13 +6,13 @@ ## Synonyms - * nucleus sublentiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:471[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus sublentiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:471, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:SLn * FMA:72404 - * NIF_GrossAnatomy:birnlex_1057 [[oboInOwl#notes](../../es/oboInOwl#notes.md) = + retired in NIFSTD present in neurlex] + * NIF_GrossAnatomy:birnlex_1057 [ [oboInOwl#notes](../../es/oboInOwl#notes.md) = retired in NIFSTD present in neurlex ] * NeuroNames:471 ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002678.md b/md/UBERON/78/UBERON_0002678.md index 45dc3987d2..b0d30e2f07 100644 --- a/md/UBERON/78/UBERON_0002678.md +++ b/md/UBERON/78/UBERON_0002678.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002678 * *Label* = regional part of medulla oblongata - * *Definition* = A regional part of brain that is part of a medulla oblongata [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a medulla oblongata [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medullary oblongata segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71011] - * segment of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1355] + * medullary oblongata segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71011 ] + * segment of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1355 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002778.md b/md/UBERON/78/UBERON_0002778.md index efc5bd9fc7..1a64fba71b 100644 --- a/md/UBERON/78/UBERON_0002778.md +++ b/md/UBERON/78/UBERON_0002778.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002778 * *Label* = ventral pallidum - * *Definition* = Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1674] + * *Definition* = Part of the globus pallidus, consisting of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1674 ] ## Synonyms - * ventral pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1674] - * Pallidum ventral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PALv] - * fibrae nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:794[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral globus pallidus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004375] - * ventral posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventral posterior complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventroposterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] + * ventral pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1674 ] + * Pallidum ventral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PALv ] + * fibrae nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:794, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral globus pallidus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004375 ] + * ventral posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventral posterior complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventroposterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] ## Cross-references @@ -24,7 +24,7 @@ * BTO:0004375 * FMA:77613 * NIF_GrossAnatomy:birnlex_1674 - * NeuroNames:794 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1674] + * NeuroNames:794 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1674 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0002978.md b/md/UBERON/78/UBERON_0002978.md index 52333ff401..513b78f2c5 100644 --- a/md/UBERON/78/UBERON_0002978.md +++ b/md/UBERON/78/UBERON_0002978.md @@ -6,24 +6,24 @@ ## Synonyms - * nucleus lateralis oralis situs principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_817] - * nucleus ventralis lateralis, pars oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_817] - * nucleus ventrooralis externus, anterior part (van buren) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_817] - * subnucleus rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_817] - * ventral anterior nucleus, pars densicellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62193] - * ventral lateral anterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62193] - * ventral lateral nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62193] - * ventral lateral thalamic nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62193] - * VLO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_817[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * oral part of the ventral lateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:338] + * nucleus lateralis oralis situs principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_817 ] + * nucleus ventralis lateralis, pars oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_817 ] + * nucleus ventrooralis externus, anterior part (van buren) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_817 ] + * subnucleus rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_817 ] + * ventral anterior nucleus, pars densicellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62193 ] + * ventral lateral anterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62193 ] + * ventral lateral nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62193 ] + * ventral lateral thalamic nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62193 ] + * VLO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_817, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * oral part of the ventral lateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:338 ] ## Cross-references * BAMS:VLO * FMA:62193 * NIF_GrossAnatomy:birnlex_817 - * NeuroNames:338 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_817] - * UMLS:C0175280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_817] + * NeuroNames:338 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_817 ] + * UMLS:C0175280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_817 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003078.md b/md/UBERON/78/UBERON_0003078.md index 65cc9e4188..623d4d2061 100644 --- a/md/UBERON/78/UBERON_0003078.md +++ b/md/UBERON/78/UBERON_0003078.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003078 * *Label* = epibranchial placode - * *Definition* = Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000117] + * *Definition* = Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000117 ] * *Comment* = Epibranchial placodes-derived neurons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively[NBK53175]. AO notes: in XAO this develops_from dorsolateral placode, but in NBK53175, this is a separate group ## Synonyms - * epibranchial placodes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ventrolateral placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * epibranchial placodes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ventrolateral placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Cross-references @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia. [Graham_A, The_development_and_evolution_of_the_pharyngeal_arches._J_Anat_(2001)_199:_133-141][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003178.md b/md/UBERON/78/UBERON_0003178.md index 023f0ffd59..45210dcdcd 100644 --- a/md/UBERON/78/UBERON_0003178.md +++ b/md/UBERON/78/UBERON_0003178.md @@ -7,7 +7,7 @@ ## Synonyms - * postscutellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004588] + * postscutellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004588 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004588 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000786 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003178 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_0003278.md b/md/UBERON/78/UBERON_0003278.md index 76e89f7d05..0c3d20ae17 100644 --- a/md/UBERON/78/UBERON_0003278.md +++ b/md/UBERON/78/UBERON_0003278.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003278 * *Label* = skeleton of lower jaw - * *Definition* = A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A subdivision of the skeleton that corresponds to the lower part of the mouth. The lower jaw skeleton includes the following elements, when present: lower jaw teeth, the mandible and other lower jaw bones, and Meckel's cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Inclusion of the FMA class 'lower jaw' is debatable - this mostly corresponds to the lower jaw skeleton (with 'maxillary part of mouth' corresponding to the upper jaw region); however, the FMA class also includes gingiva ## Synonyms - * lower jaw skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000274] - * lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001906] - * lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001273] - * mandible [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001273] - * mandibles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001273[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * mandibular series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001273] + * lower jaw skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000274 ] + * lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001906 ] + * lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001273 ] + * mandible [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001273 ] + * mandibles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001273, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * mandibular series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001273 ] ## Cross-references @@ -38,12 +38,12 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [jaw skeleton](../../UBERON/08/UBERON_0001708.md) * [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [splanchnocranium](../../UBERON/95/UBERON_0008895.md) * [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: subdivision_of anatomical cluster (UBERON:0000477)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The jaw joint of all jawed vertebrates, except for mammals, involves the quadrate and articular bones, or the posterior ends of the palatoquadrate and mandibular cartilages; A correlate of the conversion of the articular and quadrate bones to the malleus and incus is that all adult mammals have a jaw joint that lies between the dentary of the lower jaw and the squamosal bone of the skull roof.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003378.md b/md/UBERON/78/UBERON_0003378.md index 71496c36d5..5cd51ad74d 100644 --- a/md/UBERON/78/UBERON_0003378.md +++ b/md/UBERON/78/UBERON_0003378.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003378 * *Label* = cardiac muscle of auricular region - * *Definition* = A cardiac muscle tissue that is part of a atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac muscle tissue that is part of a atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * auricular region heart muscle - * cardiac muscle tissue of auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84279] + * cardiac muscle tissue of auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84279 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [atrium auricular region](../../UBERON/18/UBERON_0006618.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003478.md b/md/UBERON/78/UBERON_0003478.md index 9f4f5d8413..a4a3c37407 100644 --- a/md/UBERON/78/UBERON_0003478.md +++ b/md/UBERON/78/UBERON_0003478.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003478 * *Label* = vein of lower lip - * *Definition* = The inferior labial vein is the vein receiving blood from the lower lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_labial_vein] + * *Definition* = The inferior labial vein is the vein receiving blood from the lower lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_labial_vein ] ## Synonyms - * inferior labial vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52541] - * lower lip vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vena labialis inferior [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae labiales inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_labial_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior labial vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52541 ] + * lower lip vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vena labialis inferior [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae labiales inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_labial_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [lower lip](../../UBERON/35/UBERON_0001835.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003578.md b/md/UBERON/78/UBERON_0003578.md index dd9eeb11d7..f04612bb55 100644 --- a/md/UBERON/78/UBERON_0003578.md +++ b/md/UBERON/78/UBERON_0003578.md @@ -3,48 +3,48 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003578 * *Label* = pedal digit connective tissue - * *Definition* = A portion of connective tissue that is part of a toe [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a toe [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of foot connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of foot portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of foot textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free lower limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus pedis textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000647] - * foot digit portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * portion of connective tissue of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb digit textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digit of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digit of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digitus pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of foot digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of terminal segment of free lower limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * toe textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * connective tissue of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of foot connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of foot portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of foot textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free lower limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus pedis textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000647 ] + * foot digit portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * portion of connective tissue of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb digit textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digit of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digit of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digitus pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of foot digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of terminal segment of free lower limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * toe textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit](../../UBERON/66/UBERON_0001466.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003678.md b/md/UBERON/78/UBERON_0003678.md index eea324e1f4..05e68fd7f3 100644 --- a/md/UBERON/78/UBERON_0003678.md +++ b/md/UBERON/78/UBERON_0003678.md @@ -6,10 +6,10 @@ ## Synonyms - * apex of tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63000] - * tooth apex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63000] - * apical foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1281] - * tooth apice [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1281] + * apex of tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63000 ] + * tooth apex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63000 ] + * apical foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1281 ] + * tooth apice [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1281 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0003978.md b/md/UBERON/78/UBERON_0003978.md index eae5fc7762..8f35578b49 100644 --- a/md/UBERON/78/UBERON_0003978.md +++ b/md/UBERON/78/UBERON_0003978.md @@ -6,7 +6,7 @@ ## Synonyms - * anatomical valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67611] + * anatomical valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67611 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = valvular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004078.md b/md/UBERON/78/UBERON_0004078.md index 32aa4f282a..1af03c09f8 100644 --- a/md/UBERON/78/UBERON_0004078.md +++ b/md/UBERON/78/UBERON_0004078.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004078 * *Label* = cerebellum vermis lobule IX - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009992] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009992 ] ## Synonyms - * cerebellar posterior vermis lobule IX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:2022820] - * lobule IX of cerebellar posterior vermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:2022820] + * cerebellar posterior vermis lobule IX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:2022820 ] + * lobule IX of cerebellar posterior vermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:2022820 ] * lobule IX of cerebellum vermis - * neuraxis uvula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83883] - * uvula (IX) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:UVU] + * neuraxis uvula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83883 ] + * uvula (IX) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:UVU ] * uvula [vermis] - * uvula of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83883] + * uvula of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83883 ] * uvula of vermis of cerebellum - * vermic lobule IX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081234] - * uvula cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Uvu] + * vermic lobule IX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081234 ] + * uvula cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Uvu ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004178.md b/md/UBERON/78/UBERON_0004178.md index f88ee20f78..71901a8b84 100644 --- a/md/UBERON/78/UBERON_0004178.md +++ b/md/UBERON/78/UBERON_0004178.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004178 * *Label* = aorta smooth muscle tissue - * *Definition* = A portion of smooth muscle tissue that is part of an aorta [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of an aorta [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adult aorta involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult aorta non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult aorta smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adult aorta smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aorta involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aorta non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aorta smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * aortic smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001685] - * dorsal aorta involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dorsal aorta smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * involuntary muscle of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * non-striated muscle of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of adult aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of dorsal aorta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * smooth muscle tissue of trunk of aortic tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree involuntary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree non-striated muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk of aortic tree smooth muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult aorta involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult aorta non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult aorta smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adult aorta smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aorta involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aorta non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aorta smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * aortic smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001685 ] + * dorsal aorta involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dorsal aorta smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * involuntary muscle of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * non-striated muscle of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of adult aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of dorsal aorta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * smooth muscle tissue of trunk of aortic tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree involuntary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree non-striated muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk of aortic tree smooth muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,7 +46,7 @@ * CALOHA:TS-0048 * EFO:0002775 * MA:0000702 - * UMLS:C1706825 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aorta_Smooth_Muscle_Tissue] + * UMLS:C1706825 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aorta_Smooth_Muscle_Tissue ] * ncithesaurus:Aorta_Smooth_Muscle_Tissue ## Subsets @@ -61,15 +61,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [aorta](../../UBERON/47/UBERON_0000947.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004378.md b/md/UBERON/78/UBERON_0004378.md index 04fb527b19..db77f99a09 100644 --- a/md/UBERON/78/UBERON_0004378.md +++ b/md/UBERON/78/UBERON_0004378.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004378 * *Label* = proximal metaphysis - * *Definition* = A metaphysis that is in_proximal_side_of a diaphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metaphysis that is in_proximal_side_of a diaphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * proximal diaphyseal end of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32823] + * proximal diaphyseal end of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32823 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_proximal_side_of](../../BSPO/24/BSPO_0000124.md) some [diaphysis](../../UBERON/69/UBERON_0004769.md) and [metaphysis](../../UBERON/38/UBERON_0001438.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004478.md b/md/UBERON/78/UBERON_0004478.md index f7aa4b7a54..64e170e226 100644 --- a/md/UBERON/78/UBERON_0004478.md +++ b/md/UBERON/78/UBERON_0004478.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004478 * *Label* = musculature of larynx - * *Definition* = Any collection of muscles that is part of a larynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a larynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * laryngeal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46616] - * laryngeal muscles set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46616] - * muscle group of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46616] - * set of laryngeal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46616] - * set of muscles of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:264611] + * laryngeal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46616 ] + * laryngeal muscles set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46616 ] + * muscle group of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46616 ] + * set of laryngeal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46616 ] + * set of muscles of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:264611 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004678.md b/md/UBERON/78/UBERON_0004678.md index f651bf10d1..ae80226910 100644 --- a/md/UBERON/78/UBERON_0004678.md +++ b/md/UBERON/78/UBERON_0004678.md @@ -6,13 +6,13 @@ ## Synonyms - * apex cornu posterioris medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256700[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * apex of dorsal gray column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256700] - * apex of dorsal gray column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256700] - * apex of dorsal horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256700] - * apex of posterior horn of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256700] - * apex of spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2670] - * apex of spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2670] + * apex cornu posterioris medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256700, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * apex of dorsal gray column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256700 ] + * apex of dorsal gray column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256700 ] + * apex of dorsal horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256700 ] + * apex of posterior horn of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256700 ] + * apex of spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2670 ] + * apex of spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2670 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004778.md b/md/UBERON/78/UBERON_0004778.md index cc7d9d4b98..355a6174f1 100644 --- a/md/UBERON/78/UBERON_0004778.md +++ b/md/UBERON/78/UBERON_0004778.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004778 * *Label* = larynx submucosa - * *Definition* = A submucosa that is part of a larynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a larynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * submucosa of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * submucosa of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0004878.md b/md/UBERON/78/UBERON_0004878.md index 22018465dc..16d63b3d06 100644 --- a/md/UBERON/78/UBERON_0004878.md +++ b/md/UBERON/78/UBERON_0004878.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004878 * *Label* = distal visceral endoderm - * *Definition* = precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010126] + * *Definition* = precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010126 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005078.md b/md/UBERON/78/UBERON_0005078.md index 4995d4f03e..1c9598830c 100644 --- a/md/UBERON/78/UBERON_0005078.md +++ b/md/UBERON/78/UBERON_0005078.md @@ -1,36 +1,37 @@ -## Class : lamina terminalis of forebrain vesicle +## Class : lamina terminalis of neural tube * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005078 - * *Label* = lamina terminalis of forebrain vesicle - * *Definition* = The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lamina_terminalis] + * *Label* = lamina terminalis of neural tube + * *Definition* = The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Synonyms - * lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61975] + * lamina terminalis ## Cross-references - * BAMS:LT * BAMS:LTer * BM:LT * EHDAA2:0000903 + * EHDAA:1983 + * EHDAA:2661 * EMAPA:16649 * EMAPA:16904 - * FMA:61975 * NeuroNames:208 - * SCTID:361483008 * VHOG:0001547 + * Wikipedia:Lamina_terminalis ## Subsets ## Superclasses - * [embryonic structure](../../UBERON/50/UBERON_0002050.md) - * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) + * [embryonic tissue](../../UBERON/91/UBERON_0005291.md) + * [ecto-epithelium](../../UBERON/71/UBERON_0010371.md) * [part_of](../../BFO/50/BFO_0000050.md) some [future diencephalon](../../UBERON/22/UBERON_0006222.md) * [develops from](../../RO/02/RO_0002202.md) some [anterior neuropore](../../UBERON/70/UBERON_0005070.md) + * [output_of](../../core#output/of/core#output_of.md) some [GO_0021506](../../GO/06/GO_0021506.md) ## Equivalencies @@ -41,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005178.md b/md/UBERON/78/UBERON_0005178.md index b3a3c700ce..eeae3ee439 100644 --- a/md/UBERON/78/UBERON_0005178.md +++ b/md/UBERON/78/UBERON_0005178.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005178 * *Label* = thoracic cavity organ - * *Definition* = An organ that is in the thoracic cavity. Examples: lung, heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that is in the thoracic cavity. Examples: lung, heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) and [organ](../../UBERON/62/UBERON_0000062.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005278.md b/md/UBERON/78/UBERON_0005278.md index d932c20261..02b5db46d9 100644 --- a/md/UBERON/78/UBERON_0005278.md +++ b/md/UBERON/78/UBERON_0005278.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005278 * *Label* = nail bed of finger - * *Definition* = A nail bed that is part of a manual digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail bed that is part of a manual digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nail bed of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60348] + * nail bed of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60348 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail bed](../../UBERON/73/UBERON_0005273.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005378.md b/md/UBERON/78/UBERON_0005378.md index 6ddd29b1d5..eedfb4a126 100644 --- a/md/UBERON/78/UBERON_0005378.md +++ b/md/UBERON/78/UBERON_0005378.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005378 * *Label* = olfactory bulb granule cell layer - * *Definition* = The granule cell layer contains multiple small round neurons that lack axons. Long dendritic processes of the neurons reach the more superficial layers and inhibit mitral cells and tufted cells. Small distal processes make contacts with the exiting mitral cell axons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001327] + * *Definition* = The granule cell layer contains multiple small round neurons that lack axons. Long dendritic processes of the neurons reach the more superficial layers and inhibit mitral cells and tufted cells. Small distal processes make contacts with the exiting mitral cell axons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001327 ] ## Synonyms - * olfactory bulb main granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090404] - * granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001327] - * accessory olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] - * granule layer of main olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090404] - * main olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MOBgr] - * main olfactory bulb granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:gr] - * main olfactory bulb, granule layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MOBgr] + * olfactory bulb main granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090404 ] + * granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001327 ] + * accessory olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] + * granule layer of main olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090404 ] + * main olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MOBgr ] + * main olfactory bulb granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:gr ] + * main olfactory bulb, granule layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MOBgr ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005478.md b/md/UBERON/78/UBERON_0005478.md index 2f87eeb279..a6b712ce18 100644 --- a/md/UBERON/78/UBERON_0005478.md +++ b/md/UBERON/78/UBERON_0005478.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005478 * *Label* = sulcus limitans of neural tube - * *Definition* = A longitudinal groove in the neural tube wall of the embryo; stretches from the mesencephalon caudad[TMD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/Sulcus+limitans] + * *Definition* = A longitudinal groove in the neural tube wall of the embryo; stretches from the mesencephalon caudad[TMD]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/Sulcus+limitans ] ## Synonyms - * neural tube lateral wall sulcus limitans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001265] + * neural tube lateral wall sulcus limitans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001265 ] * sulcus limitans ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005578.md b/md/UBERON/78/UBERON_0005578.md index 1fadf6d937..ef75cd65c6 100644 --- a/md/UBERON/78/UBERON_0005578.md +++ b/md/UBERON/78/UBERON_0005578.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005578 * *Label* = rhombomere 4 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001034] + * roof plate rhombomere 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001034 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 4](../../UBERON/11/UBERON_0005511.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005678.md b/md/UBERON/78/UBERON_0005678.md index 1d40081dde..fbdf9583ed 100644 --- a/md/UBERON/78/UBERON_0005678.md +++ b/md/UBERON/78/UBERON_0005678.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005678 * *Label* = right lung cranial lobe segmental bronchus - * *Definition* = A segmental bronchus that is part of a upper lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A segmental bronchus that is part of a upper lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) and [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0005978.md b/md/UBERON/78/UBERON_0005978.md index 52660e75ed..31cf4e7f3e 100644 --- a/md/UBERON/78/UBERON_0005978.md +++ b/md/UBERON/78/UBERON_0005978.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005978 * *Label* = olfactory bulb outer nerve layer - * *Definition* = the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010057] + * *Definition* = the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010057 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006078.md b/md/UBERON/78/UBERON_0006078.md index ca80334b1d..0317f0b514 100644 --- a/md/UBERON/78/UBERON_0006078.md +++ b/md/UBERON/78/UBERON_0006078.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006278.md b/md/UBERON/78/UBERON_0006278.md index d940f81a29..81ea526d01 100644 --- a/md/UBERON/78/UBERON_0006278.md +++ b/md/UBERON/78/UBERON_0006278.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006278 * *Label* = pleuropericardial folds - * *Definition* = Each of the folds that grow out from the lateral part of the body wall. They fuse and meet with the dorsal and ventral mesentery of the foregut, separating the pleural cavities from the pericardial cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001499] + * *Definition* = Each of the folds that grow out from the lateral part of the body wall. They fuse and meet with the dorsal and ventral mesentery of the foregut, separating the pleural cavities from the pericardial cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001499 ] * *Comment* = Development notes: As the folds grow towards the midline, carrying the phrenic nerve, the root of the folds migrate ventrally[http://www.indiana.edu/~anat550/cvanim/pericard/pericard.html] ## Synonyms - * pleuro-pericardial folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17706] + * pleuro-pericardial folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17706 ] * pleuropericardial membrane - * pleuropericardial membranes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001499] + * pleuropericardial membranes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001499 ] ## Cross-references @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006378.md b/md/UBERON/78/UBERON_0006378.md index e5c81b14a0..88b52e588f 100644 --- a/md/UBERON/78/UBERON_0006378.md +++ b/md/UBERON/78/UBERON_0006378.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006378 * *Label* = vibrissa hair - * *Definition* = A specialized hair usually employed for tactile sensation. Vibrissae hair grow around the nostrils, above the lips, and on other parts of the face of most mammals, and all primates except humans. vibrissae are different from other hairs because they are implanted in a special hair follicle incorporating a capsule of blood called a blood sinus and heavily innervated by sensory nerves[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Whiskers[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376] + * *Definition* = A specialized hair usually employed for tactile sensation. Vibrissae hair grow around the nostrils, above the lips, and on other parts of the face of most mammals, and all primates except humans. vibrissae are different from other hairs because they are implanted in a special hair follicle incorporating a capsule of blood called a blood sinus and heavily innervated by sensory nerves[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Whiskers, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376 ] ## Synonyms - * contour hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009003] - * sinus hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26747[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009003] - * touch hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009003] + * contour hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009003 ] + * sinus hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26747, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009003 ] + * touch hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009003 ] * vibrissa hair * macrovibrissa * microvibrissa * motile vibrissa * true whisker - * whisker [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000163] + * whisker [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000163 ] * vibrissa - * vibrissae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * vibrissae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -48,8 +48,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In harbor seals, the structure of the vibrissal shaft is undulated (wavy) and flattened. This specialization is also found in most true seals. In contrast, the whiskers of the California sea lion are circular or elliptical in cross-section and are smooth. * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9606 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006478.md b/md/UBERON/78/UBERON_0006478.md index 4dd72badd4..c5ccf7e673 100644 --- a/md/UBERON/78/UBERON_0006478.md +++ b/md/UBERON/78/UBERON_0006478.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006478 * *Label* = Brodmann (1909) area 37 - * *Definition* = Brodmann area 37, or BA37, is part of the temporal cortex in the human brain. This area is known as occipitotemporal area 37 (H). It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the caudal portions of the fusiform gyrus and inferior temporal gyrus on the mediobasal and lateral surfaces at the caudal extreme of the temporal lobe. Cytoarchitecturally it is bounded caudally by the peristriate Brodmann area 19, rostrally by the inferior temporal area 20 and middle temporal area 21 and dorsally on the lateral aspect of the hemisphere by the angular area 39 (H) (Brodmann-1909). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_37] + * *Definition* = Brodmann area 37, or BA37, is part of the temporal cortex in the human brain. This area is known as occipitotemporal area 37 (H). It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the caudal portions of the fusiform gyrus and inferior temporal gyrus on the mediobasal and lateral surfaces at the caudal extreme of the temporal lobe. Cytoarchitecturally it is bounded caudally by the peristriate Brodmann area 19, rostrally by the inferior temporal area 20 and middle temporal area 21 and dorsally on the lateral aspect of the hemisphere by the angular area 39 (H) (Brodmann-1909). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_37 ] ## Synonyms - * B09-37 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1770] - * BA37 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 37 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1770] - * Brodmann area 37 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68634] - * Brodmann area 37, occipitotemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1770] - * area 37 0f brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68634] - * area 37 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1770] - * area occipitotemporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1770] - * area occipitotemporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_37[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * occipitotemporal area 37 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68634] - * B09-37 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1770[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-37 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1770 ] + * BA37 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 37 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1770 ] + * Brodmann area 37 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68634 ] + * Brodmann area 37, occipitotemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1770 ] + * area 37 0f brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68634 ] + * area 37 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1770 ] + * area occipitotemporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1770 ] + * area occipitotemporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_37, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * occipitotemporal area 37 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68634 ] + * B09-37 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1770, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -25,7 +25,7 @@ * NIF_GrossAnatomy:birnlex_1770 * NeuroNames:2411 * SCTID:384792003 - * UMLS:C1272498 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1770] + * UMLS:C1272498 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1770 ] * Wikipedia:Brodmann_area_37 ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006678.md b/md/UBERON/78/UBERON_0006678.md index 0ca415550d..dd39821746 100644 --- a/md/UBERON/78/UBERON_0006678.md +++ b/md/UBERON/78/UBERON_0006678.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006678 * *Label* = foramen secundum - * *Definition* = a foramen in the septum primum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_secundum] + * *Definition* = a foramen in the septum primum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_secundum ] ## Synonyms - * ostium secundum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + SCTID:308854001] - * foramen secundum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_secundum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ostium secundum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = SCTID:308854001 ] + * foramen secundum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_secundum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:17863 * FMA:71105 * SCTID:308854001 - * UMLS:C1517293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_Secundum] + * UMLS:C1517293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_Secundum ] * VHOG:0001471 * Wikipedia:Foramen_secundum * ncithesaurus:Foramen_Secundum @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Second of the two openings to perforate the septum primum between the two atria of the embryonic heart. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether. [ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620]; [about heart development] In the various tetrapod classes ontogenetic events essentially recapitulate the phylogenetic stages.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0006878.md b/md/UBERON/78/UBERON_0006878.md index 304dfb7bc3..bf62c418eb 100644 --- a/md/UBERON/78/UBERON_0006878.md +++ b/md/UBERON/78/UBERON_0006878.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006878 * *Label* = decidua parietalis - * *Definition* = The part of the decidua in the pregnant human female lining the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/] + * *Definition* = The part of the decidua in the pregnant human female lining the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/ ] ## Synonyms - * decidual parietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86479] - * decidua vera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000334] + * decidual parietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86479 ] + * decidua vera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000334 ] ## Cross-references * BTO:0000334 * FMA:86479 * SCTID:255413006 - * UMLS:C0230963 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Decidua_Parietalis] + * UMLS:C0230963 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Decidua_Parietalis ] * ncithesaurus:Decidua_Parietalis ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0007178.md b/md/UBERON/78/UBERON_0007178.md index e1bd434a28..bf41604ecf 100644 --- a/md/UBERON/78/UBERON_0007178.md +++ b/md/UBERON/78/UBERON_0007178.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007178 * *Label* = muscularis mucosae of colon - * *Definition* = A muscularis mucosa that is part of a colonic mucosa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscularis mucosa that is part of a colonic mucosa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lamina muscularis of colonic mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15656] - * lamina muscularis of colonic mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15656] + * lamina muscularis of colonic mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15656 ] + * lamina muscularis of colonic mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15656 ] * muscularis mucosa of colon ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colonic mucosa](../../UBERON/17/UBERON_0000317.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0007278.md b/md/UBERON/78/UBERON_0007278.md index 41e217dd41..a88399e1d6 100644 --- a/md/UBERON/78/UBERON_0007278.md +++ b/md/UBERON/78/UBERON_0007278.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007278 * *Label* = presumptive sinus venosus - * *Definition* = Portion of tissue that is part of the heart tube and will become the sinus venosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001722] + * *Definition* = Portion of tissue that is part of the heart tube and will become the sinus venosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001722 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [sinus venosus](../../UBERON/63/UBERON_0002063.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0007378.md b/md/UBERON/78/UBERON_0007378.md index c02643dd69..a458395b6d 100644 --- a/md/UBERON/78/UBERON_0007378.md +++ b/md/UBERON/78/UBERON_0007378.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007378 * *Label* = egg yolk - * *Definition* = The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000371[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Yolk] + * *Definition* = The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000371, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Yolk ] ## Synonyms - * yolk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000371] + * yolk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000371 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Extraembryonic structure that serves as a nutrient store for the embryo during development.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The majority of animals develop from a spherical egg with a single axis, the animal-vegetal (an-veg) axis. The animal half of the egg usually contains the nucleus of the oocyte, while the vegetal half of the egg is the preferred site for the storage of yolk. Eggs with an-veg polarity are considered ancestral for the vertebrates. Frogs, for example, have eggs with vegetally concentrated yolk and the nucleus located in the animal cytoplasm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0007778.md b/md/UBERON/78/UBERON_0007778.md index cc57cc4652..ebf22fa58a 100644 --- a/md/UBERON/78/UBERON_0007778.md +++ b/md/UBERON/78/UBERON_0007778.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007778 * *Label* = umbilical artery endothelium - * *Definition* = An endothelium that is part of a umbilical artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a umbilical artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [umbilical artery](../../UBERON/10/UBERON_0001310.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0008278.md b/md/UBERON/78/UBERON_0008278.md index 61ce42928c..c6d5a93792 100644 --- a/md/UBERON/78/UBERON_0008278.md +++ b/md/UBERON/78/UBERON_0008278.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008278 * *Label* = nematocyst - * *Definition* = A cnida that is harpoon-like in structure and is capable of penetrating prey. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae] + * *Definition* = A cnida that is harpoon-like in structure and is capable of penetrating prey. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae ] ## Synonyms - * penetrant cnida [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * penetrant cnida [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0008778.md b/md/UBERON/78/UBERON_0008778.md index e8ebf96ae4..ca92e580c0 100644 --- a/md/UBERON/78/UBERON_0008778.md +++ b/md/UBERON/78/UBERON_0008778.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008778 * *Label* = epaxial musclulature - * *Definition* = Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull. In humans, the erector spinae, the transversospinal muscles (including the multifidus, semispinalis and rotatores), the splenius and suboccipital muscles are the only epaxial muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epaxial_and_hypaxial_muscles] + * *Definition* = Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull. In humans, the erector spinae, the transversospinal muscles (including the multifidus, semispinalis and rotatores), the splenius and suboccipital muscles are the only epaxial muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epaxial_and_hypaxial_muscles ] * *Comment* = Taxon notes: The hypaxial muscles are located on the lower side of the body, often below the horizontal septum in many species (primarily fish and amphibians). In amniotes, the positional distinctions have been lost as the body's muscles have changed through evolution, but in all species, the hypaxial muscles are innervated by the ventral ramus of the spinal nerves, while the epaxial muscles are innervated by the dorsal ramus.[WP] ## Synonyms - * epaxial muscles [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * epaxial muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003229] + * epaxial muscles [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * epaxial muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003229 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [epaxial myotome region](../../UBERON/00/UBERON_0003900.md) and [musculature](../../UBERON/15/UBERON_0001015.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Trunk muscles that lies dorsal to the horizontal septum.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0008878.md b/md/UBERON/78/UBERON_0008878.md index d26cc1e28f..9f3bb846b0 100644 --- a/md/UBERON/78/UBERON_0008878.md +++ b/md/UBERON/78/UBERON_0008878.md @@ -6,16 +6,16 @@ ## Synonyms - * front of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24920] - * palm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24920] - * palm of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24920] - * palmar region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24920] - * regio palmaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * front of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24920 ] + * palm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24920 ] + * palm of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24920 ] + * palmar region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24920 ] + * regio palmaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:24920 - * UMLS:C0931849 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palmar_Region] + * UMLS:C0931849 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palmar_Region ] * galen:Palm * ncithesaurus:Palmar_Region @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0008978.md b/md/UBERON/78/UBERON_0008978.md index 7a43e1c918..312b1e9362 100644 --- a/md/UBERON/78/UBERON_0008978.md +++ b/md/UBERON/78/UBERON_0008978.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008978 * *Label* = anal sac - * *Definition* = In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001681] + * *Definition* = In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001681 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009078.md b/md/UBERON/78/UBERON_0009078.md index 141c8cd717..4edc0a5663 100644 --- a/md/UBERON/78/UBERON_0009078.md +++ b/md/UBERON/78/UBERON_0009078.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009078 * *Label* = pessulus - * *Definition* = A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclo.co.uk/webster/P/64] + * *Definition* = A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclo.co.uk/webster/P/64 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009478.md b/md/UBERON/78/UBERON_0009478.md index 3bc6311c6e..bf94b9e047 100644 --- a/md/UBERON/78/UBERON_0009478.md +++ b/md/UBERON/78/UBERON_0009478.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009478 * *Label* = associated mesenchyme of midgut - * *Definition* = Mesenchyme that is part of a midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editors note: previously logically defined as mesenchyme of midgut, but this caused disjointness violations between dense and loose mesenchyme ## Synonyms - * early midgut associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001186] + * early midgut associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001186 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009578.md b/md/UBERON/78/UBERON_0009578.md index 0c13a76492..b2a9554533 100644 --- a/md/UBERON/78/UBERON_0009578.md +++ b/md/UBERON/78/UBERON_0009578.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009578 * *Label* = myelencephalon sulcus limitans - * *Definition* = A sulcus limitans of neural tube that is part of a future myelencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sulcus limitans of neural tube that is part of a future myelencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [future myelencephalon](../../UBERON/96/UBERON_0010096.md) and [sulcus limitans of neural tube](../../UBERON/78/UBERON_0005478.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009678.md b/md/UBERON/78/UBERON_0009678.md index 33eaa6b7fe..d00b53114d 100644 --- a/md/UBERON/78/UBERON_0009678.md +++ b/md/UBERON/78/UBERON_0009678.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009678 * *Label* = tooth row - * *Definition* = Anatomical cluster consisting of adjacent teeth constituting a row. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anatomical cluster consisting of adjacent teeth constituting a row. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dental arcade [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59415] - * row of teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tooth rows [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001642[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dental arcade [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59415 ] + * row of teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tooth rows [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001642, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009778.md b/md/UBERON/78/UBERON_0009778.md index 4d9c3d2dc0..e25f6e8779 100644 --- a/md/UBERON/78/UBERON_0009778.md +++ b/md/UBERON/78/UBERON_0009778.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009778 * *Label* = pleural sac - * *Definition* = Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9690] + * *Definition* = Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9690 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009878.md b/md/UBERON/78/UBERON_0009878.md index f2090f98bc..ef1ba4a2f7 100644 --- a/md/UBERON/78/UBERON_0009878.md +++ b/md/UBERON/78/UBERON_0009878.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009878 * *Label* = mesopodial skeleton - * *Definition* = The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * basipodium skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * basipodium skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] * carpal/tarsal skeleton - * mesopodial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005022] - * mesopodium skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * skeletal parts of mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * basipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] - * mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * mesopodial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005022 ] + * mesopodium skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * skeletal parts of mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * basipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] + * mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [mesopodium region](../../UBERON/16/UBERON_0006716.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Limb skeleton subdivision consisting of endochondral bones increasing the freedom of movement of the autopodia, and located between zeugopodia and autopodia.[VSAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0009978.md b/md/UBERON/78/UBERON_0009978.md index 4da6a31999..89f24706a5 100644 --- a/md/UBERON/78/UBERON_0009978.md +++ b/md/UBERON/78/UBERON_0009978.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009978 * *Label* = epicondyle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicondyle] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicondyle ] * *Comment* = grouping class that collected the ect- and ep- icondyles of humerus and femur ## Synonyms - * epicondylus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epicondyle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epicondylus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epicondyle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:75435 * SCTID:333209006 - * UMLS:C0222681 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epicondyle] + * UMLS:C0222681 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epicondyle ] * Wikipedia:Epicondyle * galen:Epicondyle * ncithesaurus:Epicondyle @@ -36,8 +36,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epicondylar - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0010078.md b/md/UBERON/78/UBERON_0010078.md index bff2c81630..6b8f26367f 100644 --- a/md/UBERON/78/UBERON_0010078.md +++ b/md/UBERON/78/UBERON_0010078.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010078 * *Label* = optic choroid vascular plexus - * *Comment* = Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex + * *Comment* = Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex ## Synonyms - * CVP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005094[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * capillary lamina of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004176] - * choriocapillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004176] + * CVP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005094, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * capillary lamina of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004176 ] + * choriocapillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004176 ] * choroid vascular plexus - * choroid vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005094] - * choroidal vascular plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005094] - * optic choroid vascular plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004176] + * choroid vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005094 ] + * choroidal vascular plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005094 ] + * optic choroid vascular plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004176 ] ## Cross-references @@ -39,12 +39,13 @@ ## Other Annotations - * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]. + * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]. * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = ZFA:0005228 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0010378.md b/md/UBERON/78/UBERON_0010378.md index f0908e7389..295d6ee8e3 100644 --- a/md/UBERON/78/UBERON_0010378.md +++ b/md/UBERON/78/UBERON_0010378.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010378 * *Label* = mesenchyme from splanchnopleure - * *Definition* = Mesenchyme that develops_from a splanchnopleure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from a splanchnopleure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [splanchnopleure](../../UBERON/73/UBERON_0004873.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0010578.md b/md/UBERON/78/UBERON_0010578.md index 8b2ac5d488..3b18dae830 100644 --- a/md/UBERON/78/UBERON_0010578.md +++ b/md/UBERON/78/UBERON_0010578.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010578 * *Label* = manual digit 4 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 4 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 4 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 4 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 4 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4 mesenchyme](../../UBERON/94/UBERON_0005694.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010578 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0010678.md b/md/UBERON/78/UBERON_0010678.md index 28f621e2d5..d9798736fc 100644 --- a/md/UBERON/78/UBERON_0010678.md +++ b/md/UBERON/78/UBERON_0010678.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010678 * *Label* = manual digit 4 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 4 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 4 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 4 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 4 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4 mesenchyme](../../UBERON/94/UBERON_0005694.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0010878.md b/md/UBERON/78/UBERON_0010878.md index d42eaf5cf4..3a761c221d 100644 --- a/md/UBERON/78/UBERON_0010878.md +++ b/md/UBERON/78/UBERON_0010878.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011078.md b/md/UBERON/78/UBERON_0011078.md index f78e222b45..db5164c966 100644 --- a/md/UBERON/78/UBERON_0011078.md +++ b/md/UBERON/78/UBERON_0011078.md @@ -30,8 +30,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endolymphatic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011178.md b/md/UBERON/78/UBERON_0011178.md index dbde4cbdfd..f22ffa4530 100644 --- a/md/UBERON/78/UBERON_0011178.md +++ b/md/UBERON/78/UBERON_0011178.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011178 * *Label* = principal nucleus of stria terminalis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221 ] ## Synonyms - * bed nuclei of the stria terminalis, posterior division, principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTpr] - * principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000931] - * bed nuclei of the stria terminalis posterior division principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTpr] - * bed nuclei of the stria terminalis principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTpr] - * bed nucleus of the stria terminalis principal (encapsulated) nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTpr] + * bed nuclei of the stria terminalis, posterior division, principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTpr ] + * principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000931 ] + * bed nuclei of the stria terminalis posterior division principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTpr ] + * bed nuclei of the stria terminalis principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTpr ] + * bed nucleus of the stria terminalis principal (encapsulated) nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTpr ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011278.md b/md/UBERON/78/UBERON_0011278.md index 2a652d5521..6077e0fdb7 100644 --- a/md/UBERON/78/UBERON_0011278.md +++ b/md/UBERON/78/UBERON_0011278.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011278 * *Label* = nail of pedal digit 1 - * *Definition* = A nail that is part of a pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * big toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54344] - * claw of digit 1 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18739] - * nail of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54344] - * nail of great toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54344] - * nail plate of big toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54344] + * big toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54344 ] + * claw of digit 1 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18739 ] + * nail of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54344 ] + * nail of great toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54344 ] + * nail plate of big toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54344 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011678.md b/md/UBERON/78/UBERON_0011678.md index 4ff1689fe2..47deeebadd 100644 --- a/md/UBERON/78/UBERON_0011678.md +++ b/md/UBERON/78/UBERON_0011678.md @@ -6,10 +6,10 @@ ## Synonyms - * intermedium (hind) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000923] - * intermedium of pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * pedal intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * intermedium (hind) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000923 ] + * intermedium of pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * pedal intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011778.md b/md/UBERON/78/UBERON_0011778.md index f47aaabd20..dff0482759 100644 --- a/md/UBERON/78/UBERON_0011778.md +++ b/md/UBERON/78/UBERON_0011778.md @@ -7,10 +7,10 @@ ## Synonyms - * motor nucleus X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000387] - * nucleus motorius of nervi vagi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000387[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000387] - * vagal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000387] + * motor nucleus X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000387 ] + * nucleus motorius of nervi vagi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000387, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000387 ] + * vagal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000387 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011878.md b/md/UBERON/78/UBERON_0011878.md index fc6221a697..a35fc3a045 100644 --- a/md/UBERON/78/UBERON_0011878.md +++ b/md/UBERON/78/UBERON_0011878.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011878 * *Label* = muscle layer of esophagus - * *Definition* = A muscle layer that is part of a wall of esophagus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a wall of esophagus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle coat of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62998] - * muscular coat of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62998] - * muscular layer of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62998] - * tunica muscularis esophagi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tunica muscularis oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscle coat of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62998 ] + * muscular coat of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62998 ] + * muscular layer of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62998 ] + * tunica muscularis esophagi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tunica muscularis oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011878 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0011978.md b/md/UBERON/78/UBERON_0011978.md index a3f4ab012b..f2731ea728 100644 --- a/md/UBERON/78/UBERON_0011978.md +++ b/md/UBERON/78/UBERON_0011978.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011978 * *Label* = epiphysis of middle phalanx of manus - * *Definition* = An epiphysis that is part of a middle phalanx of manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a middle phalanx of manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [middle phalanx of manus](../../UBERON/64/UBERON_0003864.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011978 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0012078.md b/md/UBERON/78/UBERON_0012078.md index 64284b56c1..db087f9519 100644 --- a/md/UBERON/78/UBERON_0012078.md +++ b/md/UBERON/78/UBERON_0012078.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012078 * *Label* = fovea capitis of femur - * *Definition* = The surface of the head of the femur is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea of head of femur, which is situated a little below and behind the center of the head, and gives attachment to the ligamentum teres. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_of_head_of_femur] + * *Definition* = The surface of the head of the femur is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea of head of femur, which is situated a little below and behind the center of the head, and gives attachment to the ligamentum teres. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_of_head_of_femur ] * *Comment* = Absent in pinnipeds ## Synonyms - * fovea capitis femoris (caput femoris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43700] - * fovea capitis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_of_head_of_femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fovea capitis femoris (caput femoris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43700 ] + * fovea capitis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_of_head_of_femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fovea capitis of femoral head - * fovea for ligament of head of femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:43700] - * fovea capitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_of_head_of_femur] - * fovea of head of femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_of_head_of_femur] + * fovea for ligament of head of femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:43700 ] + * fovea capitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_of_head_of_femur ] + * fovea of head of femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_of_head_of_femur ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0012278.md b/md/UBERON/78/UBERON_0012278.md index ecb3adfdae..2d1657bcb2 100644 --- a/md/UBERON/78/UBERON_0012278.md +++ b/md/UBERON/78/UBERON_0012278.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012278 * *Label* = nasal gland - * *Definition* = The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_glands] + * *Definition* = The nasal glands are the seromucous glands in the respiratory region of the nasal mucous membrane. The three major types of nasal glands are anterior serous glands, seromucous glands, and Bowman glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_glands ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * SCTID:368881007 - * UMLS:C1522269 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC] + * UMLS:C1522269 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC ] * Wikipedia:Nasal_glands * ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory apparatus](../../UBERON/04/UBERON_0000004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0012378.md b/md/UBERON/78/UBERON_0012378.md index 88d3c430b9..09cdab355b 100644 --- a/md/UBERON/78/UBERON_0012378.md +++ b/md/UBERON/78/UBERON_0012378.md @@ -7,18 +7,18 @@ ## Synonyms * bladder muscular coat - * muscle layer of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15930] - * muscular coat of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15930] - * muscular coat of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15930] - * muscular layer of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15930] - * muscular layer of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15930] - * tunica musculari vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * tunica muscularis (vesica urinaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * muscle layer of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15930 ] + * muscular coat of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15930 ] + * muscular coat of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15930 ] + * muscular layer of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15930 ] + * muscular layer of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15930 ] + * tunica musculari vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * tunica muscularis (vesica urinaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references * FMA:15930 - * UMLS:C1288327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Muscular_Coat] + * UMLS:C1288327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Muscular_Coat ] * ncithesaurus:Bladder_Muscular_Coat ## Subsets @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urinary bladder](../../UBERON/55/UBERON_0001255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0012478.md b/md/UBERON/78/UBERON_0012478.md index 7601197b8d..ca9aa47b5d 100644 --- a/md/UBERON/78/UBERON_0012478.md +++ b/md/UBERON/78/UBERON_0012478.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013078.md b/md/UBERON/78/UBERON_0013078.md index 2004a14172..89f7d88489 100644 --- a/md/UBERON/78/UBERON_0013078.md +++ b/md/UBERON/78/UBERON_0013078.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013078 * *Label* = venom-injecting tooth - * *Definition* = A fang that is used to inject venom into prey, through either a tube or a groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A fang that is used to inject venom into prey, through either a tube or a groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013178.md b/md/UBERON/78/UBERON_0013178.md index 6339953bd5..18f2ea877f 100644 --- a/md/UBERON/78/UBERON_0013178.md +++ b/md/UBERON/78/UBERON_0013178.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013178 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013278.md b/md/UBERON/78/UBERON_0013278.md index 16327f12df..353400b560 100644 --- a/md/UBERON/78/UBERON_0013278.md +++ b/md/UBERON/78/UBERON_0013278.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013278 * *Label* = canal of Nuck - * *Definition* = A patent pouch of peritoneum extending into the labia majora of women. It is analogous to the processus vaginalis in males. The pouch accompanies the gubernaculum during development of the urinary and reproductive organs, more specifically during the descent of the ovaries, and normally obliterates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_Nuck] + * *Definition* = A patent pouch of peritoneum extending into the labia majora of women. It is analogous to the processus vaginalis in males. The pouch accompanies the gubernaculum during development of the urinary and reproductive organs, more specifically during the descent of the ovaries, and normally obliterates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_Nuck ] ## Synonyms - * canal of nuck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_Nuck] - * nuck%27s canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_Nuck] - * persistent processus vaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009217] - * processus vaginalis peritonei femininus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canal_of_Nuck[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * canal of nuck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_Nuck ] + * nuck%27s canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_Nuck ] + * persistent processus vaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009217 ] + * processus vaginalis peritonei femininus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canal_of_Nuck, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013278 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013478.md b/md/UBERON/78/UBERON_0013478.md index 197b59e079..2a16da5fc5 100644 --- a/md/UBERON/78/UBERON_0013478.md +++ b/md/UBERON/78/UBERON_0013478.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013478 * *Label* = cecal tonsil - * *Definition* = A thickened round patch of lymphoid tissue located at the ileocecal junction adjacent to the sacculus rotundus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0824754077] + * *Definition* = A thickened round patch of lymphoid tissue located at the ileocecal junction adjacent to the sacculus rotundus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0824754077 ] * *Comment* = In avians the polycryptic cecal tissue is similar to the mammalian palatine tonsil ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa-associated lymphoid tissue](../../UBERON/61/UBERON_0001961.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013678.md b/md/UBERON/78/UBERON_0013678.md index 7eb5c9fdcf..3b6005c596 100644 --- a/md/UBERON/78/UBERON_0013678.md +++ b/md/UBERON/78/UBERON_0013678.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013678 * *Label* = anatomical line between inner canthi - * *Definition* = An anatomical line of the face that connects the two inner (medial) canthi of the eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An anatomical line of the face that connects the two inner (medial) canthi of the eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical line](../../UBERON/00/UBERON_0006800.md) and [connects](../../ts/core#connects.md) some [inner canthus of left eye](../../UBERON/80/UBERON_0013680.md) and [connects](../../ts/core#connects.md) some [inner canthus of right eye](../../UBERON/79/UBERON_0013679.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013678 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0013778.md b/md/UBERON/78/UBERON_0013778.md index 336c9ef3dc..8d12b8faba 100644 --- a/md/UBERON/78/UBERON_0013778.md +++ b/md/UBERON/78/UBERON_0013778.md @@ -6,9 +6,9 @@ ## Synonyms - * plantar skin of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37849] - * skin of plantar part of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37849] - * skin of sole of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37849] + * plantar skin of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37849 ] + * skin of plantar part of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37849 ] + * skin of sole of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37849 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [skin of pes](../../UBERON/13/UBERON_0001513.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0014378.md b/md/UBERON/78/UBERON_0014378.md index 5e533e3ad4..67e56a70d8 100644 --- a/md/UBERON/78/UBERON_0014378.md +++ b/md/UBERON/78/UBERON_0014378.md @@ -6,7 +6,7 @@ ## Synonyms - * intrinsic muscle of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:65020] + * intrinsic muscle of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:65020 ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014378 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0014478.md b/md/UBERON/78/UBERON_0014478.md index 1c65ec51e9..302a6f7126 100644 --- a/md/UBERON/78/UBERON_0014478.md +++ b/md/UBERON/78/UBERON_0014478.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014478 * *Label* = rib skeletal system - * *Definition* = Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeletal system that consists of all ribs and rib joints in an organism. In many vertebrates this consists of the combination of the rib cage and all rib joints, but some vertebrates have ribs outside the thoracic rib cage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * rib series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002100] + * rib series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002100 ] * rib skeleton - * set of all ribs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:265719] + * set of all ribs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:265719 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014478 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0014778.md b/md/UBERON/78/UBERON_0014778.md index c9f2585fac..cb931fd9d9 100644 --- a/md/UBERON/78/UBERON_0014778.md +++ b/md/UBERON/78/UBERON_0014778.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014778 * *Label* = cell group - * *Definition* = A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_532] + * *Definition* = A group of cells that may not be contained within macroscopic anatomical boundaries, e.g., A9 dopaminergic cell group; massa intercalata of the amygdala (CUMBO) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_532 ] * *Comment* = Consider adding to CARO. ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014778 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_0015078.md b/md/UBERON/78/UBERON_0015078.md index 079b4b99e9..3b818c4e0d 100644 --- a/md/UBERON/78/UBERON_0015078.md +++ b/md/UBERON/78/UBERON_0015078.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015078 + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2000078.md b/md/UBERON/78/UBERON_2000078.md index 2a288dd0ef..4d330c1465 100644 --- a/md/UBERON/78/UBERON_2000078.md +++ b/md/UBERON/78/UBERON_2000078.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000078 * *Label* = ventral actinotrichium - * *Definition* = Actinotrichium which is part of the ventral fin fold. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium which is part of the ventral fin fold. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * ventral actinotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000078[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ventral actinotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000078, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral fin fold](../../UBERON/69/UBERON_2001069.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2000178.md b/md/UBERON/78/UBERON_2000178.md index 092b17f94f..58e62a1fe1 100644 --- a/md/UBERON/78/UBERON_2000178.md +++ b/md/UBERON/78/UBERON_2000178.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2000278.md b/md/UBERON/78/UBERON_2000278.md index bec1b8acf2..a9d295433d 100644 --- a/md/UBERON/78/UBERON_2000278.md +++ b/md/UBERON/78/UBERON_2000278.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2000678.md b/md/UBERON/78/UBERON_2000678.md index 8e1e820a08..cff684585a 100644 --- a/md/UBERON/78/UBERON_2000678.md +++ b/md/UBERON/78/UBERON_2000678.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000678 * *Label* = obsolete hair cell anterior macula - * *Definition* = Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * sensory hair cells anterior macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000678[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * sensory hair cells anterior macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000678, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_2000778.md b/md/UBERON/78/UBERON_2000778.md index 04f2efd993..bb973f02f0 100644 --- a/md/UBERON/78/UBERON_2000778.md +++ b/md/UBERON/78/UBERON_2000778.md @@ -6,7 +6,7 @@ ## Synonyms - * interneurons spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000778[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * interneurons spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000778, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0005000 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_2000878.md b/md/UBERON/78/UBERON_2000878.md index 99cd9c6963..1c00890ceb 100644 --- a/md/UBERON/78/UBERON_2000878.md +++ b/md/UBERON/78/UBERON_2000878.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 17 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000878[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 17 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000878, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_2000978.md b/md/UBERON/78/UBERON_2000978.md index 48f17b0871..c6199e4fcd 100644 --- a/md/UBERON/78/UBERON_2000978.md +++ b/md/UBERON/78/UBERON_2000978.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000978 * *Label* = somite 22 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 22 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001278.md b/md/UBERON/78/UBERON_2001278.md index 264bb51423..8b52e868e7 100644 --- a/md/UBERON/78/UBERON_2001278.md +++ b/md/UBERON/78/UBERON_2001278.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001278 * *Label* = posterior chamber swim bladder - * *Definition* = The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001378.md b/md/UBERON/78/UBERON_2001378.md index 84c7da8a36..39752efd64 100644 --- a/md/UBERON/78/UBERON_2001378.md +++ b/md/UBERON/78/UBERON_2001378.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001578.md b/md/UBERON/78/UBERON_2001578.md index 796f3bd6c4..ced4a90ae8 100644 --- a/md/UBERON/78/UBERON_2001578.md +++ b/md/UBERON/78/UBERON_2001578.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001578 * *Label* = anterior dorsomedial process of autopalatine - * *Definition* = In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001678.md b/md/UBERON/78/UBERON_2001678.md index 538cfcde81..1cc0847c3c 100644 --- a/md/UBERON/78/UBERON_2001678.md +++ b/md/UBERON/78/UBERON_2001678.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001678 * *Label* = mesethmoid-frontal joint - * *Definition* = Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [actinopterygian frontal bone](../../UBERON/66/UBERON_0004866.md) and [core#connects](../../ts/core#connects.md) some [mesethmoid bone](../../UBERON/38/UBERON_0011238.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001778.md b/md/UBERON/78/UBERON_2001778.md index c378b9b26c..67e3748fc3 100644 --- a/md/UBERON/78/UBERON_2001778.md +++ b/md/UBERON/78/UBERON_2001778.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001878.md b/md/UBERON/78/UBERON_2001878.md index ff88a8bf36..7a1f764d8b 100644 --- a/md/UBERON/78/UBERON_2001878.md +++ b/md/UBERON/78/UBERON_2001878.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001878 * *Label* = rib of vertebra 2 - * *Definition* = Rib that articulates with the parapophysis of the second centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the second centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2001978.md b/md/UBERON/78/UBERON_2001978.md index b8266dfb6f..e6a1f359be 100644 --- a/md/UBERON/78/UBERON_2001978.md +++ b/md/UBERON/78/UBERON_2001978.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001978 * *Label* = maxillary tooth row - * *Definition* = Tooth row that is on the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Tooth row that is on the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2002078.md b/md/UBERON/78/UBERON_2002078.md index 3030c05c04..26584d028d 100644 --- a/md/UBERON/78/UBERON_2002078.md +++ b/md/UBERON/78/UBERON_2002078.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002078 * *Label* = hypural plate - * *Definition* = Perichondrally ossified bone that results from the fusion of two or more hypurals and support a variable number of principal caudal lepidotrichia. The hypural plate is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Perichondrally ossified bone that results from the fusion of two or more hypurals and support a variable number of principal caudal lepidotrichia. The hypural plate is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2005078.md b/md/UBERON/78/UBERON_2005078.md index 4d36015fee..110dd7fa70 100644 --- a/md/UBERON/78/UBERON_2005078.md +++ b/md/UBERON/78/UBERON_2005078.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005078 * *Label* = middle mesencephalic central artery - * *Definition* = Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * MMCtA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005078] + * MMCtA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005078 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2005178.md b/md/UBERON/78/UBERON_2005178.md index a8f02f048d..7706bd2ed9 100644 --- a/md/UBERON/78/UBERON_2005178.md +++ b/md/UBERON/78/UBERON_2005178.md @@ -7,7 +7,7 @@ ## Synonyms - * dorsal longitudinal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005178] + * dorsal longitudinal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005178 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/78/UBERON_2005278.md b/md/UBERON/78/UBERON_2005278.md index 9297dc7e61..cff515f98e 100644 --- a/md/UBERON/78/UBERON_2005278.md +++ b/md/UBERON/78/UBERON_2005278.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005278 * *Label* = preopercle vertical limb-hyomandibula joint - * *Definition* = Joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Joint that articulates the anterior edge of the preopercle vertical limb and the hyomandibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [hyomandibular bone](../../UBERON/06/UBERON_0011606.md) and [core#connects](../../ts/core#connects.md) some [preopercle vertical limb](../../UBERON/36/UBERON_2000336.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = haendel * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2012-04-09T07:41:34Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2005378.md b/md/UBERON/78/UBERON_2005378.md index 164d476642..eb864e42d1 100644 --- a/md/UBERON/78/UBERON_2005378.md +++ b/md/UBERON/78/UBERON_2005378.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005378 * *Label* = dorsal fin distal radial bone 7 - * *Definition* = dorsal fin distal radial 7 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 7 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 7](../../UBERON/78/UBERON_2105378.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2105378.md b/md/UBERON/78/UBERON_2105378.md index 3ed711c82a..90d67589a8 100644 --- a/md/UBERON/78/UBERON_2105378.md +++ b/md/UBERON/78/UBERON_2105378.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 7](../../UBERON/70/UBERON_2005370.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_2205378.md b/md/UBERON/78/UBERON_2205378.md index c28074e9d7..e31ea6fa34 100644 --- a/md/UBERON/78/UBERON_2205378.md +++ b/md/UBERON/78/UBERON_2205378.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205378 * *Label* = dorsal fin distal radial cartilage 7 - * *Definition* = dorsal fin distal radial 7 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 7 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 7](../../UBERON/78/UBERON_2105378.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3000078.md b/md/UBERON/78/UBERON_3000078.md index fb46d6208d..441671efa5 100644 --- a/md/UBERON/78/UBERON_3000078.md +++ b/md/UBERON/78/UBERON_3000078.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3000178.md b/md/UBERON/78/UBERON_3000178.md index abe4f012da..066829042a 100644 --- a/md/UBERON/78/UBERON_3000178.md +++ b/md/UBERON/78/UBERON_3000178.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000178 * *Label* = footplate of pars media plectri - * *Definition* = Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Independent, horizontal bar of cartilage located on the anterior part of the fenestra ovalis in front of the pars interna plectri. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * fenestral plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000178] - * interstapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000178] - * otostapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000178] - * pars otica columellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000178] - * pseudooperculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000178] + * fenestral plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000178 ] + * interstapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000178 ] + * otostapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000178 ] + * pars otica columellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000178 ] + * pseudooperculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000178 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3000678.md b/md/UBERON/78/UBERON_3000678.md index fec6bb63b7..b1aceaf7b9 100644 --- a/md/UBERON/78/UBERON_3000678.md +++ b/md/UBERON/78/UBERON_3000678.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000678 * *Label* = esophageal process - * *Definition* = Median process located on the posterior end of the cricoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Median process located on the posterior end of the cricoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * spina oesophagea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000678] + * spina oesophagea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000678 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3000778.md b/md/UBERON/78/UBERON_3000778.md index 713cd405c1..e46fbe551b 100644 --- a/md/UBERON/78/UBERON_3000778.md +++ b/md/UBERON/78/UBERON_3000778.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000778 * *Label* = supracoracoid foramen - * *Definition* = Opening on the scapulocoracoid bone through which passes the n. supracoracoideus and the corresponding artery and vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the scapulocoracoid bone through which passes the n. supracoracoideus and the corresponding artery and vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * foramen supracoracoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000778] + * foramen supracoracoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000778 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3000878.md b/md/UBERON/78/UBERON_3000878.md index 535700c776..7f8edcd592 100644 --- a/md/UBERON/78/UBERON_3000878.md +++ b/md/UBERON/78/UBERON_3000878.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000878 * *Label* = intumescentia bilateralis superior - * *Definition* = Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3010078.md b/md/UBERON/78/UBERON_3010078.md index 7227f2016f..06130d0263 100644 --- a/md/UBERON/78/UBERON_3010078.md +++ b/md/UBERON/78/UBERON_3010078.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010078 * *Label* = M. iliacus externus - * *Definition* = Originates on the ventral and lateral surfaces of the ala ossis ilei and inserts on the postero-dorsal face of the caput femoris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventral and lateral surfaces of the ala ossis ilei and inserts on the postero-dorsal face of the caput femoris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3010178.md b/md/UBERON/78/UBERON_3010178.md index 62550d6f7d..6a963aa206 100644 --- a/md/UBERON/78/UBERON_3010178.md +++ b/md/UBERON/78/UBERON_3010178.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_3010778.md b/md/UBERON/78/UBERON_3010778.md index 8a92f46873..50fdd9c543 100644 --- a/md/UBERON/78/UBERON_3010778.md +++ b/md/UBERON/78/UBERON_3010778.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010778 * *Label* = jugal ramule - * *Definition* = This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = This ramule innervates the jugal line of neuromasts and is the dorsal branch of the ramus mandibularis externus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_4000078.md b/md/UBERON/78/UBERON_4000078.md index 9e0dccbde7..3145f8473b 100644 --- a/md/UBERON/78/UBERON_4000078.md +++ b/md/UBERON/78/UBERON_4000078.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000078 * *Label* = chondroid tissue - * *Definition* = Skeletal tissue that is mineralized, has large chondrocyte-like cells, sparse extracellular matrix, and minimal perichondrium; develops from non-mineralized chondroid tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator] + * *Definition* = Skeletal tissue that is mineralized, has large chondrocyte-like cells, sparse extracellular matrix, and minimal perichondrium; develops from non-mineralized chondroid tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator ] ## Synonyms - * chondroid bone tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * chondroid bone tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_4200078.md b/md/UBERON/78/UBERON_4200078.md index ff39509090..c7f576d5a4 100644 --- a/md/UBERON/78/UBERON_4200078.md +++ b/md/UBERON/78/UBERON_4200078.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/78/UBERON_4200178.md b/md/UBERON/78/UBERON_4200178.md index 29b04cc463..c2601b165d 100644 --- a/md/UBERON/78/UBERON_4200178.md +++ b/md/UBERON/78/UBERON_4200178.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0000079.md b/md/UBERON/79/UBERON_0000079.md index 70852d9924..44bb5584ba 100644 --- a/md/UBERON/79/UBERON_0000079.md +++ b/md/UBERON/79/UBERON_0000079.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000079 * *Label* = male reproductive system - * *Definition* = the organs associated with producing offspring in the gender that produces spermatozoa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001145] + * *Definition* = the organs associated with producing offspring in the gender that produces spermatozoa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001145 ] ## Synonyms - * genitalia of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male genital system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45664] + * genitalia of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male genital system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45664 ] * male genitalia * male genitals - * male organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system of male organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * male genital organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000082] - * male reproductive tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000396] - * systema genitale masculinum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000082] + * male organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system of male organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * male genital organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000082 ] + * male reproductive tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000396 ] + * systema genitale masculinum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000082 ] ## Cross-references @@ -36,8 +36,8 @@ * OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA * SCTID:361340001 * TGMA:0000634 - * UMLS:C0017422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Male_Genitalia] - * UMLS:C1963704 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Male_Reproductive_System] + * UMLS:C0017422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Male_Genitalia ] + * UMLS:C1963704 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Male_Reproductive_System ] * VHOG:0000725 * WBbt:0008423 * XAO:0000155 @@ -56,7 +56,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [reproductive system](../../UBERON/90/UBERON_0000990.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0000179.md b/md/UBERON/79/UBERON_0000179.md index 3e2f826cb9..6499655831 100644 --- a/md/UBERON/79/UBERON_0000179.md +++ b/md/UBERON/79/UBERON_0000179.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hematopoietic system](../../UBERON/90/UBERON_0002390.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-08T04:38:19Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0000379.md b/md/UBERON/79/UBERON_0000379.md index 80dc654f23..44b1206dab 100644 --- a/md/UBERON/79/UBERON_0000379.md +++ b/md/UBERON/79/UBERON_0000379.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000379 * *Label* = tracheal mucosa - * *Definition* = A mucosa that is part of a respiratory airway. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a respiratory airway. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Mucous membrane of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7471] - * Tracheal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7471] - * Tunica mucosa (tracheae) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7471] - * mucosa of organ of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa tracheae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7471[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * windpipe mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * Mucous membrane of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7471 ] + * Tracheal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7471 ] + * Tunica mucosa (tracheae) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7471 ] + * mucosa of organ of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa tracheae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7471, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * windpipe mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory airway](../../UBERON/05/UBERON_0001005.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0000479.md b/md/UBERON/79/UBERON_0000479.md index b70f9024d0..c23da0fcdc 100644 --- a/md/UBERON/79/UBERON_0000479.md +++ b/md/UBERON/79/UBERON_0000479.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000479 * *Label* = tissue - * *Definition* = Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000043] + * *Definition* = Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000043 ] * *Comment* = Editor note: changed label and definition to reflect CARO2 ## Synonyms - * portion of tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000043] + * portion of tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000043 ] * tissue portion - * simple tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000043] + * simple tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000043 ] ## Cross-references @@ -29,7 +29,7 @@ * NIF_GrossAnatomy:birnlex_19 * TAO:0001477 * TGMA:0001844 - * UMLS:C0040300 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tissue] + * UMLS:C0040300 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tissue ] * VHOG:0001757 * WBbt:0005729 * XAO:0003040 @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0000979.md b/md/UBERON/79/UBERON_0000979.md index c33a20d459..3d19a75f97 100644 --- a/md/UBERON/79/UBERON_0000979.md +++ b/md/UBERON/79/UBERON_0000979.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000979 * *Label* = tibia - * *Definition* = The major preaxial endochondral bone in the posterior zeugopod[Phenoscape]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:mah] + * *Definition* = The major preaxial endochondral bone in the posterior zeugopod[Phenoscape]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:mah ] ## Synonyms - * shankbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibia] - * shinbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibia] + * shankbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibia ] + * shinbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibia ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A02.835.232.500.883 * OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA * SCTID:182061009 - * UMLS:C0040184 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibia] + * UMLS:C0040184 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibia ] * Wikipedia:Tibia * galen:Tibia * http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray260.png @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [tibia endochondral element](../../UBERON/04/UBERON_0015004.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001079.md b/md/UBERON/79/UBERON_0001079.md index 716c906d6f..d3980e58b7 100644 --- a/md/UBERON/79/UBERON_0001079.md +++ b/md/UBERON/79/UBERON_0001079.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001079 * *Label* = superior articular process of vertebra - * *Definition* = Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Pugener_and_Maglia_2008] + * *Definition* = Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Pugener_and_Maglia_2008 ] * *Comment* = TODO - add distinct classes for hemal vs neural? ## Synonyms * cranial articular process of vertebra - * neural prezygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001325] - * neural prezygopophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001325] + * neural prezygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001325 ] + * neural prezygopophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001325 ] * prezygapophysis * processus articularis superior * vertebra cranial articular process - * neural prezygapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001325[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neural prezygapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001325, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001179.md b/md/UBERON/79/UBERON_0001179.md index c815dbb8e2..137c195d49 100644 --- a/md/UBERON/79/UBERON_0001179.md +++ b/md/UBERON/79/UBERON_0001179.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001179 * *Label* = peritoneal cavity - * *Definition* = Cavity of serous sac surrounded by the peritoneum.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Cavity of serous sac surrounded by the peritoneum.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cavitas peritonealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001782] - * cavitas peritonealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peritoneal_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * saccus serosus peritonei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peritoneal_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavitas peritonealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001782 ] + * cavitas peritonealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peritoneal_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * saccus serosus peritonei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peritoneal_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0000054 * MESH:A01.047.025.600.678 * SCTID:181616008 - * UMLS:C1704247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peritoneal_Cavity] + * UMLS:C1704247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peritoneal_Cavity ] * VHOG:0000852 * Wikipedia:Peritoneal_cavity * ncithesaurus:Peritoneal_Cavity @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) and [part_of](../../BFO/50/BFO_0000050.md) some [serous sac](../../UBERON/06/UBERON_0005906.md) and [surrounded_by](../../RO/19/RO_0002219.md) some [peritoneum](../../UBERON/58/UBERON_0002358.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The potential space between the parietal and visceral layers of the peritoneum, which are normally in contact. The peritoneal cavity is divided into the greater and lesser sac. The greater sac is the peritoneal cavity, and the lesser sac is the omental bursa. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In hagfishes a transverse septum extends upward from the ventral body wall posterior to the heart, partly separating an anterior pericardial cavity from a larger peritoneal cavity. (...) These basic relationships have not been modified by urodeles. The small pericardial cavity remains far forward where it is separated by a transverse septum from the principal coelom, which may now be called a pleuroperitoneal cavity because slender lungs are present. (...) The heart [of other tetrapods] is separated from the lungs (and liver if present) by more or less horizontal partitions that have their origin in the embryo as folds on the serous membrane of the right and left lateral body walls. These grow out to join in the midline of the body. They are called lateral mesocardia (birds) or pleuropericardial membranes. Posteriorly they join the transverse septum to form the adult pericardial membrane, or pericardium. (...) In their partitioning of their coelom, embryonic mammals resemble first early fishes (incomplete partition, posterior to heart, consisting of the transverse septum) and then reptiles (pericardium derived from transverse septum and pleuropericardial membranes) Mammals then separate paired pleural cavities from the peritoneal cavity by a diaphragm. The ventral portion of this organ comes from the transverse septum. The dorsal portion is derived from the dorsal mesentery and from still another pair of outgrowths from the lateral body wall, the pleuroperitoneal membranes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001279.md b/md/UBERON/79/UBERON_0001279.md index ce1ba0c38a..62f6f315e3 100644 --- a/md/UBERON/79/UBERON_0001279.md +++ b/md/UBERON/79/UBERON_0001279.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001279 * *Label* = portal triad - * *Definition* = a component of the hepatic lobule, that consists of: hepatic artery, hepatic portal vein, bile duct, lymphatic vessels, and the branch of the vagus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Portal_triad] + * *Definition* = a component of the hepatic lobule, that consists of: hepatic artery, hepatic portal vein, bile duct, lymphatic vessels, and the branch of the vagus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Portal_triad ] * *Comment* = The misnomer "portal triad" traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver. ## Synonyms * trias hepatica - * trias hepatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Portal_triad[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trias hepatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Portal_triad, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:17523 * MA:0002499 * SCTID:362192000 - * UMLS:C0227514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Portal_Triad] + * UMLS:C0227514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Portal_Triad ] * Wikipedia:Portal_triad * http://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG * ncithesaurus:Portal_Triad @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001379.md b/md/UBERON/79/UBERON_0001379.md index 3164c9d1c6..24c91be05d 100644 --- a/md/UBERON/79/UBERON_0001379.md +++ b/md/UBERON/79/UBERON_0001379.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001379 * *Label* = vastus lateralis - * *Definition* = The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_lateralis] + * *Definition* = The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_lateralis ] ## Synonyms * vastus lateralis muscle * lateralis - * vastus externus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001563] + * vastus externus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001563 ] ## Cross-references @@ -17,7 +17,7 @@ * EFO:0001937 * FMA:22431 * MA:0002402 - * UMLS:C0224444 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vastus_Lateralis] + * UMLS:C0224444 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vastus_Lateralis ] * Wikipedia:Vastus_lateralis * galen:VastusLateralis * http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001479.md b/md/UBERON/79/UBERON_0001479.md index e1ea79b0c0..e21938235c 100644 --- a/md/UBERON/79/UBERON_0001479.md +++ b/md/UBERON/79/UBERON_0001479.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001479 * *Label* = sesamoid bone - * *Definition* = A sesamoid element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A sesamoid element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO] ## Synonyms - * ossa sesamoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sesamoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ossa sesamoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sesamoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * sesamoid ## Cross-references @@ -20,7 +20,7 @@ * MA:0001375 * MESH:A02.835.232.730 * SCTID:362914002 - * UMLS:C0036846 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sesamoid_Bone] + * UMLS:C0036846 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sesamoid_Bone ] * Wikipedia:Sesamoid_bone * galen:SessamoidBone * http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [sesamoid element](../../UBERON/31/UBERON_0013631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001579.md b/md/UBERON/79/UBERON_0001579.md index e7a6114690..61fd1d5d09 100644 --- a/md/UBERON/79/UBERON_0001579.md +++ b/md/UBERON/79/UBERON_0001579.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001579 * *Label* = olfactory nerve - * *Definition* = Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0471209627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_nerve] + * *Definition* = Nerve that carries information from the olfactory epithelium to the olfactory bulb[Butler and Hodos]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0471209627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_nerve ] * *Comment* = Taxon notes: connects to main OB (in taxa where main/accessory distinction is important) ## Synonyms * Olfactory nerve [I] * first cranial nerve - * nervus olfactorius [i] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46787[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olfactory I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001293] + * nervus olfactorius [i] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46787, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olfactory I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001293 ] * olfactory i nerve - * 1n [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1319[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * 1n [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1319, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * CN-I * cranial nerve I - * fila olfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003648] - * nerve I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:32] - * nerve of smell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003648] - * nervus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003648] - * nervus olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olfactoria fila [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:32] - * olfactory fila [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003648] + * fila olfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003648 ] + * nerve I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:32 ] + * nerve of smell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003648 ] + * nervus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003648 ] + * nervus olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olfactoria fila [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:32 ] + * olfactory fila [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003648 ] ## Cross-references @@ -38,13 +38,13 @@ * MA:0001096 * MESH:A08.800.800.120.640 * NIF_GrossAnatomy:birnlex_1319 - * NeuroNames:32 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1319] + * NeuroNames:32 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1319 ] * OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA * SCTID:180937006 * TAO:0000249 - * UMLS:C0028938 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1319] - * UMLS:C0028938 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Nerve] - * UMLS:C1268984 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1319] + * UMLS:C0028938 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1319 ] + * UMLS:C0028938 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Nerve ] + * UMLS:C1268984 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1319 ] * VHOG:0000703 * Wikipedia:Olfactory_nerve * XAO:0000426 @@ -62,8 +62,8 @@ * [cranial nerve](../../UBERON/85/UBERON_0001785.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory epithelium](../../UBERON/97/UBERON_0001997.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) * [develops from](../../RO/02/RO_0002202.md) some [olfactory placode](../../UBERON/50/UBERON_0003050.md) ## Equivalencies @@ -79,8 +79,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The 1st cranial nerve. The olfactory nerve conveys the sense of smell. It is formed by the axons of OLFACTORY RECEPTOR NEURONS which project from the olfactory epithelium (in the nasal epithelium) to the OLFACTORY BULB[MESH:A08.800.800.120.640]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...) (reference 1); Phylogenetically, the cranial nerves are thought to have evolved from dorsal and ventral nerves of a few anterior spinal nerves that became incorporated into the braincase. Dorsal and ventral nerves fuse in the trunk but not in the head, and they produce two series: dorsal cranial nerves (V, VII, IX, and X) and ventral cranial nerves (III, IV, VI, and XIII) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001679.md b/md/UBERON/79/UBERON_0001679.md index 67a865534e..46d7e309ec 100644 --- a/md/UBERON/79/UBERON_0001679.md +++ b/md/UBERON/79/UBERON_0001679.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001679 * *Label* = ethmoid bone - * *Definition* = a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoid_bone] + * *Definition* = a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoid_bone ] * *Comment* = AO notes: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA. Taxon notes: todo - homology e.g. mesethmoid of teleost ## Synonyms - * ethmoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52740] - * ethmoidal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000101] - * os ethmoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52740[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os ethmoidale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoid] + * ethmoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52740 ] + * ethmoidal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000101 ] + * os ethmoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52740, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os ethmoidale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoid ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A02.835.232.781.292 * OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA * SCTID:272674006 - * UMLS:C0015027 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ethmoid_Bone] + * UMLS:C0015027 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ethmoid_Bone ] * VHOG:0001317 * Wikipedia:Ethmoid_bone * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg @@ -55,8 +55,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ethmoid region of the chondrocranium and the nasal capsules, which were largely unossified in early tetrapods and ancestral amniotes, are represented in mammals by the ethmoid and turbinates bones, respectively.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ethmoidal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001779.md b/md/UBERON/79/UBERON_0001779.md index aaef4bff1f..314cd8132e 100644 --- a/md/UBERON/79/UBERON_0001779.md +++ b/md/UBERON/79/UBERON_0001779.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001779 * *Label* = iris stroma - * *Definition* = the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iris_stroma[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/stroma-of-iris.html] + * *Definition* = the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iris_stroma, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/stroma-of-iris.html ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001879.md b/md/UBERON/79/UBERON_0001879.md index d64018e469..194f6365fd 100644 --- a/md/UBERON/79/UBERON_0001879.md +++ b/md/UBERON/79/UBERON_0001879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001879 * *Label* = nucleus of diagonal band - * *Definition* = A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Nucleus_of_Diagonal_Band] + * *Definition* = A brain structure that is part of the septal nuclear complex. It is connected with the hippocampus, hypothalamus and amygdala. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Nucleus_of_Diagonal_Band ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,11 +11,11 @@ * diagonal band nucleus * nucleus of the diagonal band of broca * olfactory area (roberts) - * area olfactoria (Roberts) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:265[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * diagonal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:265] - * nuclei of horizontal and vertical limbs of diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:265] - * nucleus fasciculi diagonalis Brocae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:265[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the diagonal band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:265] + * area olfactoria (Roberts) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:265, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * diagonal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:265 ] + * nuclei of horizontal and vertical limbs of diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:265 ] + * nucleus fasciculi diagonalis Brocae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:265, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the diagonal band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:265 ] ## Cross-references @@ -26,9 +26,9 @@ * FMA:61882 * MA:0000936 * NIF_GrossAnatomy:birnlex_719 - * NeuroNames:265 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_719] - * UMLS:C0175227 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_719] - * UMLS:C0175227 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nucleus_of_Diagonal_Band] + * NeuroNames:265 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_719 ] + * UMLS:C0175227 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_719 ] + * UMLS:C0175227 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nucleus_of_Diagonal_Band ] * Wikipedia:Nucleus_of_diagonal_band * ncithesaurus:Nucleus_of_Diagonal_Band @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0001979.md b/md/UBERON/79/UBERON_0001979.md index f6ff210730..df95d045e5 100644 --- a/md/UBERON/79/UBERON_0001979.md +++ b/md/UBERON/79/UBERON_0001979.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001979 * *Label* = venule - * *Definition* = Subdivision of venous tree (organ) which is directly continuous with the capillary vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venule] + * *Definition* = Subdivision of venous tree (organ) which is directly continuous with the capillary vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venule ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A07.231.432.952 * SCTID:341687009 * TAO:0005315 - * UMLS:C0042520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venule] + * UMLS:C0042520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venule ] * VHOG:0001765 * Wikipedia:Venule * ZFA:0005315 @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002079.md b/md/UBERON/79/UBERON_0002079.md index 98549ffbfc..baae89fd8f 100644 --- a/md/UBERON/79/UBERON_0002079.md +++ b/md/UBERON/79/UBERON_0002079.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002079 * *Label* = left cardiac atrium - * *Definition* = A cardiac atrium that is in the left side of the heart. It receives oxygenated blood from the pulmonary veins, In mammals this is pumped into the left ventricle, via the Mitral valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_atrium] + * *Definition* = A cardiac atrium that is in the left side of the heart. It receives oxygenated blood from the pulmonary veins, In mammals this is pumped into the left ventricle, via the Mitral valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_atrium ] ## Synonyms - * atrium sinistrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_atrium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * atrium sinistrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_atrium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * cardiac left atrium - * heart left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000074] - * left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000369] + * heart left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000074 ] + * left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000369 ] * left atrium of heart * left cardiac atrium @@ -25,7 +25,7 @@ * OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw * SCTID:244387002 - * UMLS:C0225860 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Atrium] + * UMLS:C0225860 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Atrium ] * VHOG:0000369 * Wikipedia:Left_atrium * XAO:0003191 @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac atrium](../../UBERON/81/UBERON_0002081.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The chamber of the heart that receives blood from the lungs[XAO:EJS]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002179.md b/md/UBERON/79/UBERON_0002179.md index 7b358cca72..2c89f74893 100644 --- a/md/UBERON/79/UBERON_0002179.md +++ b/md/UBERON/79/UBERON_0002179.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002179 * *Label* = lateral funiculus - * *Definition* = The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_funiculus] + * *Definition* = The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_funiculus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * lateral funiculus of spinal cord - * lateral white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74000] - * funiculus lateralis medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_funiculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74000 ] + * funiculus lateralis medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_funiculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002279.md b/md/UBERON/79/UBERON_0002279.md index adafcd48a6..7d7f182594 100644 --- a/md/UBERON/79/UBERON_0002279.md +++ b/md/UBERON/79/UBERON_0002279.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002279 * *Label* = vestibular aqueduct - * *Definition* = At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_aqueduct] + * *Definition* = At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_aqueduct ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * aqueductus vestibuli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vestibular_aqueduct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aqueductus vestibuli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vestibular_aqueduct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002379.md b/md/UBERON/79/UBERON_0002379.md index 4157dd0c8d..45ee61e494 100644 --- a/md/UBERON/79/UBERON_0002379.md +++ b/md/UBERON/79/UBERON_0002379.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002379 * *Label* = perineal muscle - * *Definition* = A muscle organ that is part of a perineum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a perineum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * muscle of perineum - * muscle organ of perineal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of perineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * perineal region muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * perineum muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of perineal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of perineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * perineal region muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * perineum muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:9623 * MA:0000538 - * UMLS:C0224382 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perineal_Muscle] + * UMLS:C0224382 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perineal_Muscle ] * ncithesaurus:Perineal_Muscle ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [perineum](../../UBERON/56/UBERON_0002356.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002479.md b/md/UBERON/79/UBERON_0002479.md index 8a2ef1bc24..f27b84f086 100644 --- a/md/UBERON/79/UBERON_0002479.md +++ b/md/UBERON/79/UBERON_0002479.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002479 * *Label* = dorsal lateral geniculate nucleus - * *Definition* = The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=61422] + * *Definition* = The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=61422 ] ## Synonyms * lateral geniculate complex, dorsal part - * nucleus dorsalis corporis geniculati lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62214[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus geniculatus lateralis pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1595] - * DLG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1595[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpus geniculatum laterale (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:353[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal nucleus of lateral geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002775] - * dorsal part of the lateral geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:353] - * lateral geniculate nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LGd] - * lateral geniculate nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:353] - * nucleus corporis geniculati lateralis, pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:353[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus geniculatus lateralis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:353[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus dorsalis corporis geniculati lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62214, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus geniculatus lateralis pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1595 ] + * DLG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1595, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpus geniculatum laterale (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:353, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal nucleus of lateral geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002775 ] + * dorsal part of the lateral geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:353 ] + * lateral geniculate nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LGd ] + * lateral geniculate nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:353 ] + * nucleus corporis geniculati lateralis, pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:353, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus geniculatus lateralis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:353, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * FMA:62214 * MA:0002775 * NIF_GrossAnatomy:birnlex_1595 - * NeuroNames:353 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1595] - * UMLS:C0175292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1595] + * NeuroNames:353 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1595 ] + * UMLS:C0175292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1595 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002579.md b/md/UBERON/79/UBERON_0002579.md index 124e7c0e35..304f449199 100644 --- a/md/UBERON/79/UBERON_0002579.md +++ b/md/UBERON/79/UBERON_0002579.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002579 * *Label* = regional part of medullary reticular formation - * *Definition* = A regional part of brain that is part of a medullary reticular formation [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a medullary reticular formation [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medullary reticular formation segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:73730] - * segment of medullary reticular formation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1060] + * medullary reticular formation segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:73730 ] + * segment of medullary reticular formation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1060 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002679.md b/md/UBERON/79/UBERON_0002679.md index e3adf94965..5534fe2faa 100644 --- a/md/UBERON/79/UBERON_0002679.md +++ b/md/UBERON/79/UBERON_0002679.md @@ -6,20 +6,20 @@ ## Synonyms - * anterodorsal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62141] - * anterodorsal nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * anterodorsal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62141] - * nucleus anterior dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterior dorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterior thalami dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterodorsalis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterodorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus anterodorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus anterosuperior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * nucleus thalamicus anterodorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1358] - * AD [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1358[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus anterodorsalis of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:303[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterodorsal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62141 ] + * anterodorsal nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * anterodorsal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62141 ] + * nucleus anterior dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterior dorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterior thalami dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterodorsalis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterodorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus anterodorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus anterosuperior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * nucleus thalamicus anterodorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1358 ] + * AD [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1358, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus anterodorsalis of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:303, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * BM:Die-Th-AD * FMA:62141 * NIF_GrossAnatomy:birnlex_1358 - * NeuroNames:303 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1358] + * NeuroNames:303 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1358 ] * SCTID:279127002 - * UMLS:C0228318 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1358] + * UMLS:C0228318 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1358 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002779.md b/md/UBERON/79/UBERON_0002779.md index b6e8b6e672..da3c62fa89 100644 --- a/md/UBERON/79/UBERON_0002779.md +++ b/md/UBERON/79/UBERON_0002779.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002779 * *Label* = lateral superior olivary nucleus - * *Definition* = In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olivary_body] + * *Definition* = In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olivary_body ] ## Synonyms - * accessory olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72472] - * accessory superior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72472] - * accessory superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72472] - * lateral superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72472] - * superior olivary nucleus, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72472] - * inferior olivary complex dorsalaccessory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IOda] - * nucleus olivaris superior lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:571[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior olivary complex, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:571] + * accessory olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72472 ] + * accessory superior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72472 ] + * accessory superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72472 ] + * lateral superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72472 ] + * superior olivary nucleus, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72472 ] + * inferior olivary complex dorsalaccessory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IOda ] + * nucleus olivaris superior lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:571, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior olivary complex, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:571 ] ## Cross-references @@ -23,9 +23,9 @@ * BM:Pons-SOL * FMA:72472 * NIF_GrossAnatomy:birnlex_1675 - * NeuroNames:571 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1675] + * NeuroNames:571 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1675 ] * SCTID:360477003 - * UMLS:C0175429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1675] + * UMLS:C0175429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1675 ] * Wikipedia:Olivary_body * http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002879.md b/md/UBERON/79/UBERON_0002879.md index 5c6b64d712..3918e9ba80 100644 --- a/md/UBERON/79/UBERON_0002879.md +++ b/md/UBERON/79/UBERON_0002879.md @@ -6,16 +6,16 @@ ## Synonyms - * Pe5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2655[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus peritrigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:762[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Pe5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2655, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus peritrigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:762, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Pe5 * FMA:72600 * NIF_GrossAnatomy:birnlex_2655 - * NeuroNames:762 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2655] - * UMLS:C0262307 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2655] + * NeuroNames:762 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2655 ] + * UMLS:C0262307 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2655 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0002979.md b/md/UBERON/79/UBERON_0002979.md index 90d75237ee..a14e04cbbd 100644 --- a/md/UBERON/79/UBERON_0002979.md +++ b/md/UBERON/79/UBERON_0002979.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002979 * *Label* = Purkinje cell layer of cerebellar cortex - * *Definition* = The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021680] + * *Definition* = The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021680 ] ## Synonyms - * Purkinje cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83896] - * cerebellar Purkinje cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83896[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021694] + * Purkinje cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83896 ] + * cerebellar Purkinje cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83896, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021694 ] * cerebellum Purkinje cell layer * cerebellum Purkinje layer - * nuclei reticulares (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus reticulatus (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus thalamicus reticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * reticular nucleus thalamus (Arnold) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365] - * reticulatum thalami (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei reticulares (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus reticulatus (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus thalamicus reticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * reticular nucleus thalamus (Arnold) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365 ] + * reticulatum thalami (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,11 +25,11 @@ * FMA:83896 * MA:0000997 * NIF_GrossAnatomy:birnlex_818 - * NeuroNames:365 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_818] + * NeuroNames:365 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_818 ] * SCTID:369046001 - * UMLS:C0228469 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_818] - * UMLS:C1289475 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_818] - * UMLS:C1709776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum] + * UMLS:C0228469 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_818 ] + * UMLS:C1289475 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_818 ] + * UMLS:C1709776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum ] * ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003079.md b/md/UBERON/79/UBERON_0003079.md index edf9b3d041..07880ee857 100644 --- a/md/UBERON/79/UBERON_0003079.md +++ b/md/UBERON/79/UBERON_0003079.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003079 * *Label* = floor plate - * *Definition* = A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021508[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15738958[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Floor_plate] + * *Definition* = The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021508, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15738958, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Floor_plate ] * *Comment* = Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. ## Synonyms * floorplate - * FP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000022] - * bodenplatte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001720] - * ventral plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001720] + * FP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000022 ] + * bodenplatte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001720 ] + * ventral plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001720 ] ## Cross-references @@ -34,12 +34,16 @@ ## Superclasses - * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [nervous system](../../UBERON/16/UBERON_0001016.md) + * [cell layer](../../UBERON/19/UBERON_0000119.md) + * [mesoderm-derived structure](../../UBERON/20/UBERON_0004120.md) + * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) + * [embryonic tissue](../../UBERON/91/UBERON_0005291.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) * [develops from](../../RO/02/RO_0002202.md) some [notochord](../../UBERON/28/UBERON_0002328.md) * [develops from](../../RO/02/RO_0002202.md) some [presumptive floor plate](../../UBERON/86/UBERON_0007286.md) * [produces](../../RO/00/RO_0003000.md) some [spondin-1](../../PR/57/PR_000015557.md) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [glial cell](../../CL/25/CL_0000125.md) + * [in_ventral_side_of](../../core#in/of/core#in_ventral_side_of.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) ## Equivalencies @@ -50,8 +54,10 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003079 + * *[description](../../on/description.md)* = A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube. + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003179.md b/md/UBERON/79/UBERON_0003179.md index 889fb868c3..6afdd203a4 100644 --- a/md/UBERON/79/UBERON_0003179.md +++ b/md/UBERON/79/UBERON_0003179.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004595 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000726 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003179 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/79/UBERON_0003279.md b/md/UBERON/79/UBERON_0003279.md index cc584060d5..4d652c58b5 100644 --- a/md/UBERON/79/UBERON_0003279.md +++ b/md/UBERON/79/UBERON_0003279.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003279 * *Label* = endothelium of trachea - * *Definition* = An endothelium that is part of a trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endothelium of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trachea endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endothelium of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trachea endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003379.md b/md/UBERON/79/UBERON_0003379.md index cd793f60cf..c038869409 100644 --- a/md/UBERON/79/UBERON_0003379.md +++ b/md/UBERON/79/UBERON_0003379.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003379 * *Label* = cardiac muscle of right atrium - * *Definition* = A portion of cardiac muscle tissue that is part of a right atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a right atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle of cardiac right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of heart right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle tissue of heart right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle tissue of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle tissue of right atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac muscle of cardiac right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of heart right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle tissue of heart right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle tissue of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle tissue of right atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * myocardium of right atrium - * right atrium heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004155] - * right atrium myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001227] - * textus muscularis of myocardium of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of right atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of right cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * right atrium heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004155 ] + * right atrium myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001227 ] + * textus muscularis of myocardium of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of right atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of right cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003479.md b/md/UBERON/79/UBERON_0003479.md index 561d3dd994..79cf268f00 100644 --- a/md/UBERON/79/UBERON_0003479.md +++ b/md/UBERON/79/UBERON_0003479.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003479 * *Label* = thoracic cavity vein - * *Definition* = A vein that is part of a thoracic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a thoracic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cavity of chest vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cavity of chest vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003579.md b/md/UBERON/79/UBERON_0003579.md index 47e50bfee6..1a77abbf53 100644 --- a/md/UBERON/79/UBERON_0003579.md +++ b/md/UBERON/79/UBERON_0003579.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003579 * *Label* = shoulder connective tissue - * *Definition* = A portion of connective tissue that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * shoulder textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * shoulder textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003679.md b/md/UBERON/79/UBERON_0003679.md index 4c1b7e6fb6..6b9e1e5719 100644 --- a/md/UBERON/79/UBERON_0003679.md +++ b/md/UBERON/79/UBERON_0003679.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003679 * *Label* = mouth floor - * *Definition* = The ventral area of the mouth. In organisms with a tongue, this is the area under the ventral surface of the tongue[ncit, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Floor_of_the_Mouth] + * *Definition* = The ventral area of the mouth. In organisms with a tongue, this is the area under the ventral surface of the tongue[ncit, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Floor_of_the_Mouth ] ## Synonyms - * floor of mouth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86592] - * sublingual region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1283] + * floor of mouth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86592 ] + * sublingual region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1283 ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:1283 * MESH:A14.549.441 * SCTID:245786002 - * UMLS:C0026638 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Floor_of_the_Mouth] + * UMLS:C0026638 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Floor_of_the_Mouth ] * ncithesaurus:Floor_of_the_Mouth ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0003979.md b/md/UBERON/79/UBERON_0003979.md index 83920f2ddd..1d0d4680ed 100644 --- a/md/UBERON/79/UBERON_0003979.md +++ b/md/UBERON/79/UBERON_0003979.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003979 * *Label* = utricle valve - * *Definition* = the utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009261] + * *Definition* = the utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009261 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004079.md b/md/UBERON/79/UBERON_0004079.md index 8b1d5aca62..b198a1fc30 100644 --- a/md/UBERON/79/UBERON_0004079.md +++ b/md/UBERON/79/UBERON_0004079.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004079 * *Label* = cerebellum vermis lobule V - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009993] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009993 ] ## Synonyms - * lobule V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CUL5] + * lobule V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CUL5 ] * lobule V of cerebellum vermis - * vermic lobule V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081228] - * culmen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001002] + * vermic lobule V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081228 ] + * culmen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001002 ] * culmen of cerebellum - * neuraxis culmen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83886] + * neuraxis culmen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83886 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004179.md b/md/UBERON/79/UBERON_0004179.md index 23ec2427dc..210f3e208c 100644 --- a/md/UBERON/79/UBERON_0004179.md +++ b/md/UBERON/79/UBERON_0004179.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004179 * *Label* = prostate glandular acinus - * *Definition* = A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060525[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18977204] + * *Definition* = A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060525, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18977204 ] * *Comment* = Concurrent with branching morphogenesis, the solid cords of epithelium formed by budding arborize and differentiate postnatally into glandular acin. The basic prostate architecture is established by puberty and acquires secretory function thereafter[PMID:18977204] ## Synonyms - * prostatic acinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66808] - * prostatic follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66808] + * prostatic acinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66808 ] + * prostatic follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66808 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004379.md b/md/UBERON/79/UBERON_0004379.md index a33f977abf..d6301e55b9 100644 --- a/md/UBERON/79/UBERON_0004379.md +++ b/md/UBERON/79/UBERON_0004379.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004379 * *Label* = distal epiphysis - * *Definition* = An epiphysis that adjacent_to a distal metaphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that adjacent_to a distal metaphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * distal end of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32822] + * distal end of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32822 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [distal metaphysis](../../UBERON/77/UBERON_0004377.md) and [epiphysis](../../UBERON/37/UBERON_0001437.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004479.md b/md/UBERON/79/UBERON_0004479.md index 807f9b7604..df2c6096ec 100644 --- a/md/UBERON/79/UBERON_0004479.md +++ b/md/UBERON/79/UBERON_0004479.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004479 * *Label* = musculature of trunk - * *Definition* = Any collection of muscles that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50187] - * set of muscles of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50187] + * muscle group of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50187 ] + * set of muscles of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50187 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004679.md b/md/UBERON/79/UBERON_0004679.md index c61eef4973..3c88ccf97b 100644 --- a/md/UBERON/79/UBERON_0004679.md +++ b/md/UBERON/79/UBERON_0004679.md @@ -6,9 +6,9 @@ ## Synonyms - * dentate gyrus molecular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4127] - * molecular layer of dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83677] - * molecular layer of the dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Mol] + * dentate gyrus molecular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4127 ] + * molecular layer of dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83677 ] + * molecular layer of the dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Mol ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004779.md b/md/UBERON/79/UBERON_0004779.md index 74416ab129..76e23b5dca 100644 --- a/md/UBERON/79/UBERON_0004779.md +++ b/md/UBERON/79/UBERON_0004779.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004779 * *Label* = respiratory system lamina propria - * *Definition* = A lamina propria that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0004879.md b/md/UBERON/79/UBERON_0004879.md index f2e627f7fa..0310d3cdce 100644 --- a/md/UBERON/79/UBERON_0004879.md +++ b/md/UBERON/79/UBERON_0004879.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004879 * *Label* = marginal zone of embryo - * *Definition* = Belt-like region of presumptive mesoderm at the equator of the late blastula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000068[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/153] + * *Definition* = Belt-like region of presumptive mesoderm at the equator of the late blastula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000068, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/153 ] * *Comment* = See tracker item for discussion ## Synonyms - * margin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000038] - * marginal zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000068] - * margins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000038[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * margin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000038 ] + * marginal zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000068 ] + * margins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000038, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005079.md b/md/UBERON/79/UBERON_0005079.md index 00b359c39d..13215c6373 100644 --- a/md/UBERON/79/UBERON_0005079.md +++ b/md/UBERON/79/UBERON_0005079.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005079 * *Label* = eggshell - * *Definition* = a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030703[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eggshell] + * *Definition* = a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030703, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eggshell ] ## Synonyms - * egg shell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001716] + * egg shell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001716 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005179.md b/md/UBERON/79/UBERON_0005179.md index 41d1f3c281..063095057e 100644 --- a/md/UBERON/79/UBERON_0005179.md +++ b/md/UBERON/79/UBERON_0005179.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005179 * *Label* = pelvic region organ - * *Definition* = An organ that is part of the pelvic region. Examples: reproductive organs (in some organisms), urinary bladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that is part of the pelvic region. Examples: reproductive organs (in some organisms), urinary bladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * pelvis organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000543] + * pelvis organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000543 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005279.md b/md/UBERON/79/UBERON_0005279.md index 90c2a9b580..594d9c6031 100644 --- a/md/UBERON/79/UBERON_0005279.md +++ b/md/UBERON/79/UBERON_0005279.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005279 * *Label* = nail bed of toe - * *Definition* = A nail bed that is part of a pedal digit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail bed that is part of a pedal digit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nail bed of toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60529] + * nail bed of toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60529 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail bed](../../UBERON/73/UBERON_0005273.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005379.md b/md/UBERON/79/UBERON_0005379.md index 1bc9269d19..def774b4eb 100644 --- a/md/UBERON/79/UBERON_0005379.md +++ b/md/UBERON/79/UBERON_0005379.md @@ -6,8 +6,8 @@ ## Synonyms - * internal plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001320] - * internal plexiform layer of the olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IPl] + * internal plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001320 ] + * internal plexiform layer of the olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IPl ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005479.md b/md/UBERON/79/UBERON_0005479.md index 1f85032e06..c0ed207b49 100644 --- a/md/UBERON/79/UBERON_0005479.md +++ b/md/UBERON/79/UBERON_0005479.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005479 * *Label* = superior mesenteric ganglion - * *Definition* = In the upper part of the superior mesenteric plexus close to the origin of the superior mesenteric artery is a ganglion, the superior mesenteric ganglion. The superior mesenteric ganglion is the synapsing point for one of the pre- and post-synaptic nerves of the sympathetic division of the autonomous nervous system. This nerve goes on to innervate part of the large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_ganglion] + * *Definition* = In the upper part of the superior mesenteric plexus close to the origin of the superior mesenteric artery is a ganglion, the superior mesenteric ganglion. The superior mesenteric ganglion is the synapsing point for one of the pre- and post-synaptic nerves of the sympathetic division of the autonomous nervous system. This nerve goes on to innervate part of the large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_ganglion ] ## Synonyms - * ganglion mesentericum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion mesentericum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_ganglion] - * superior mesenteric ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_ganglion] + * ganglion mesentericum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_ganglion ] + * ganglion mesentericum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior mesenteric ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_ganglion ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005579.md b/md/UBERON/79/UBERON_0005579.md index 2199a98afe..224dc6727c 100644 --- a/md/UBERON/79/UBERON_0005579.md +++ b/md/UBERON/79/UBERON_0005579.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005579 * *Label* = rhombomere 5 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000764] - * floor plate rhombomere 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000764] - * floorplate r5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000764] + * floor plate r5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000764 ] + * floor plate rhombomere 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000764 ] + * floorplate r5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000764 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 5](../../UBERON/15/UBERON_0005515.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005679.md b/md/UBERON/79/UBERON_0005679.md index c042311f11..61e86ec5fb 100644 --- a/md/UBERON/79/UBERON_0005679.md +++ b/md/UBERON/79/UBERON_0005679.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005679 * *Label* = right lung caudal lobe segmental bronchus - * *Definition* = A segmental bronchus that is part of a lower lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A segmental bronchus that is part of a lower lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower lobe of right lung](../../UBERON/71/UBERON_0002171.md) and [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005879.md b/md/UBERON/79/UBERON_0005879.md index ab7871ae11..c0553ba778 100644 --- a/md/UBERON/79/UBERON_0005879.md +++ b/md/UBERON/79/UBERON_0005879.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005879 * *Label* = pharyngeal cleft - * *Definition* = the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_groove] + * *Definition* = the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_groove ] * *Comment* = AO notes: some ontologies distringuish between cleft and cleft ectoderm, we merge these here. Editor notes: consider adding location (precursor) - i.e. external (ectodermal). Note we use overlaps as the relationship to the arches ## Synonyms - * pharyngeal groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_groove] - * pharyngeal groove ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * pharyngeal groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_groove ] + * pharyngeal groove ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * gill cleft * Kiemenspalten - * branchial cleft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_groove] - * branchial groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010623[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_groove] - * sulcus pharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngeal_groove[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * branchial cleft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_groove ] + * branchial groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010623, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_groove ] + * sulcus pharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngeal_groove, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * AAO:0010623 * EMAPA:32750 - * UMLS:C1280559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pharyngeal_Groove] + * UMLS:C1280559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pharyngeal_Groove ] * Wikipedia:Pharyngeal_groove * http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg * ncithesaurus:Pharyngeal_Groove @@ -35,7 +35,7 @@ * [surface groove](../../UBERON/46/UBERON_0006846.md) * [ecto-epithelium](../../UBERON/71/UBERON_0010371.md) * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch](../../UBERON/39/UBERON_0002539.md) * [develops from](../../RO/02/RO_0002202.md) some [external ectoderm](../../UBERON/76/UBERON_0000076.md) ## Equivalencies @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0005979.md b/md/UBERON/79/UBERON_0005979.md index 5294b81431..8d59662e45 100644 --- a/md/UBERON/79/UBERON_0005979.md +++ b/md/UBERON/79/UBERON_0005979.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005979 * *Label* = crista terminalis - * *Definition* = the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010495] + * *Definition* = the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010495 ] ## Synonyms - * crista terminalis atrii dextri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9236[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crista terminalis cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9236] - * crista terminalis of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9236] + * crista terminalis atrii dextri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9236, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crista terminalis cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9236 ] + * crista terminalis of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9236 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0006079.md b/md/UBERON/79/UBERON_0006079.md index fce553c134..8f13498434 100644 --- a/md/UBERON/79/UBERON_0006079.md +++ b/md/UBERON/79/UBERON_0006079.md @@ -6,7 +6,7 @@ ## Synonyms - * segment of dorsal funiculus of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258190] + * segment of dorsal funiculus of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258190 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0006279.md b/md/UBERON/79/UBERON_0006279.md index 3d95aa410e..eaa929e5ba 100644 --- a/md/UBERON/79/UBERON_0006279.md +++ b/md/UBERON/79/UBERON_0006279.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006279 * *Label* = pleuroperitoneal canal - * *Definition* = Each of the canals that links the peritoneal cavity and the caudal part of a pleural cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0124020607[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001505] + * *Definition* = Each of the canals that links the peritoneal cavity and the caudal part of a pleural cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0124020607, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001505 ] ## Synonyms - * pleuroperitoneal channel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001505] + * pleuroperitoneal channel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001505 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [peritoneal cavity](../../UBERON/79/UBERON_0001179.md) and [connects](../../ts/core#connects.md) some [pleural cavity](../../UBERON/02/UBERON_0002402.md) and [epithelial tube](../../UBERON/14/UBERON_0003914.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Each of the canal that links the peritoneal cavity and the caudal part of a pleural cavity. [ISBN10:0124020607][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0006479.md b/md/UBERON/79/UBERON_0006479.md index 57ecac076b..686e3d00f7 100644 --- a/md/UBERON/79/UBERON_0006479.md +++ b/md/UBERON/79/UBERON_0006479.md @@ -6,16 +6,16 @@ ## Synonyms - * B09-38 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1771] - * BA38 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 38 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1771] - * Brodmann area 38 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68635] - * Brodmann area 38, temporopolar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1771] - * area 38 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68635] - * area 38 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1771] - * area temporopolaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1771] - * temporopolar area 38 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68635] - * B09-38 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1771[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-38 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1771 ] + * BA38 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 38 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1771 ] + * Brodmann area 38 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68635 ] + * Brodmann area 38, temporopolar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1771 ] + * area 38 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68635 ] + * area 38 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1771 ] + * area temporopolaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1771 ] + * temporopolar area 38 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68635 ] + * B09-38 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1771, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -23,7 +23,7 @@ * NIF_GrossAnatomy:birnlex_1771 * NeuroNames:2412 * SCTID:384793008 - * UMLS:C1272499 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1771] + * UMLS:C1272499 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1771 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0006679.md b/md/UBERON/79/UBERON_0006679.md index b4cd513c29..277fa0be8d 100644 --- a/md/UBERON/79/UBERON_0006679.md +++ b/md/UBERON/79/UBERON_0006679.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006679 * *Label* = carina of trachea - * *Definition* = In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carina_of_trachea] + * *Definition* = In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carina_of_trachea ] ## Synonyms - * carina tracheae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18407] - * tracheal carina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7465] - * carina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7465] - * bifurcation of the trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carina_of_trachea] - * carina %28anatomy%29 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carina_of_trachea] - * carina of trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carina_of_trachea] - * carina tracheae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carina_of_trachea[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * carina tracheae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18407 ] + * tracheal carina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7465 ] + * carina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7465 ] + * bifurcation of the trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carina_of_trachea ] + * carina %28anatomy%29 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carina_of_trachea ] + * carina of trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carina_of_trachea ] + * carina tracheae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carina_of_trachea, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:18407 * FMA:7465 * SCTID:181214003 - * UMLS:C0225594 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carina] + * UMLS:C0225594 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carina ] * Wikipedia:Carina_of_trachea * http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg * ncithesaurus:Carina @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0006779.md b/md/UBERON/79/UBERON_0006779.md index 926d0bdbbb..f389cc6949 100644 --- a/md/UBERON/79/UBERON_0006779.md +++ b/md/UBERON/79/UBERON_0006779.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006779 * *Label* = superficial white layer of superior colliculus - * *Definition* = superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] + * *Definition* = superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] ## Synonyms - * lamina III of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris iii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71112[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer III of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71112] - * optic layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71112] - * optic layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71112] - * stratum opticum colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71112[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * optic layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:op] - * superior colliculus optic layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCop] + * lamina III of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris iii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71112, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer III of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71112 ] + * optic layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71112 ] + * optic layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71112 ] + * stratum opticum colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71112, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * optic layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:op ] + * superior colliculus optic layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCop ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0007179.md b/md/UBERON/79/UBERON_0007179.md index 65ef3b5f0a..a43c33ae41 100644 --- a/md/UBERON/79/UBERON_0007179.md +++ b/md/UBERON/79/UBERON_0007179.md @@ -6,7 +6,7 @@ ## Synonyms - * basal cell layer of uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84154] + * basal cell layer of uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84154 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0007279.md b/md/UBERON/79/UBERON_0007279.md index 707e09afbe..4b06194632 100644 --- a/md/UBERON/79/UBERON_0007279.md +++ b/md/UBERON/79/UBERON_0007279.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007279 * *Label* = presumptive atrioventricular canal - * *Definition* = A presumptive structure that has_potential_to_develop_into a atrioventricular canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a atrioventricular canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [atrioventricular canal](../../UBERON/87/UBERON_0002087.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is part of the heart tube and will become the atrioventricular canal.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0007379.md b/md/UBERON/79/UBERON_0007379.md index 56f2573eba..da7405e2a0 100644 --- a/md/UBERON/79/UBERON_0007379.md +++ b/md/UBERON/79/UBERON_0007379.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007379 * *Label* = egg - * *Definition* = The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000369[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Egg_(biology)] + * *Definition* = The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000369, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Egg_(biology) ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0007679.md b/md/UBERON/79/UBERON_0007679.md index 9b13b2e56b..26f1ce2202 100644 --- a/md/UBERON/79/UBERON_0007679.md +++ b/md/UBERON/79/UBERON_0007679.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007679 * *Label* = intersomitic vein - * *Definition* = The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] + * *Definition* = The vein that sprouts from the posterior cardinal vein, growing dorsally between the somites, and then joining, and draining the dorsal longitudinal anastomosing vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] ## Synonyms - * intersegmental vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001057] - * ISV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001057] - * segmental vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26056] + * intersegmental vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001057 ] + * ISV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001057 ] + * segmental vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26056 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. Isogai et al. 2003.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0007779.md b/md/UBERON/79/UBERON_0007779.md index f519f4716a..937f7f927d 100644 --- a/md/UBERON/79/UBERON_0007779.md +++ b/md/UBERON/79/UBERON_0007779.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007779 * *Label* = transudate - * *Definition* = Body substance in liquid state, which is derived from plasma by passage through the (intact) wall of capillaries without further processing by secretory cells or glands. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12276] + * *Definition* = Body substance in liquid state, which is derived from plasma by passage through the (intact) wall of capillaries without further processing by secretory cells or glands. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12276 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = transudative - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0008279.md b/md/UBERON/79/UBERON_0008279.md index f84678b4fb..9f25718df1 100644 --- a/md/UBERON/79/UBERON_0008279.md +++ b/md/UBERON/79/UBERON_0008279.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008279 * *Label* = spirocyst - * *Definition* = A cnida that is adhesive and lasso-like in structure and is capable of being projected at and wrapping around prey. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae] + * *Definition* = A cnida that is adhesive and lasso-like in structure and is capable of being projected at and wrapping around prey. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cnida#Types_of_cnidae ] ## Synonyms - * volvent cnida [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * volvent cnida [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0008779.md b/md/UBERON/79/UBERON_0008779.md index 7bd5d32657..00e298a7a7 100644 --- a/md/UBERON/79/UBERON_0008779.md +++ b/md/UBERON/79/UBERON_0008779.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008779 * *Label* = subclavius - * *Definition* = The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavius_muscle] + * *Definition* = The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavius_muscle ] ## Synonyms - * musculus subclavius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subclavicular muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavius_muscle] + * musculus subclavius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subclavicular muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavius_muscle ] ## Cross-references * FMA:13410 - * UMLS:C0224348 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subclavius] + * UMLS:C0224348 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subclavius ] * Wikipedia:Subclavius_muscle * http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png * ncithesaurus:Subclavius @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0008879.md b/md/UBERON/79/UBERON_0008879.md index c271fe1149..4fec575045 100644 --- a/md/UBERON/79/UBERON_0008879.md +++ b/md/UBERON/79/UBERON_0008879.md @@ -7,9 +7,9 @@ ## Synonyms - * auricular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001228] - * ligament of auricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61035] - * pinna ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61035] + * auricular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001228 ] + * ligament of auricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61035 ] + * pinna ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61035 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0008979.md b/md/UBERON/79/UBERON_0008979.md index eec60b7d3a..98e7080400 100644 --- a/md/UBERON/79/UBERON_0008979.md +++ b/md/UBERON/79/UBERON_0008979.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008979 * *Label* = carcass - * *Definition* = A dead body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001965] + * *Definition* = A dead body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001965 ] ## Synonyms - * cadaver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001965] - * dead body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001965] + * cadaver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001965 ] + * dead body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001965 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009479.md b/md/UBERON/79/UBERON_0009479.md index dfaddbbc19..16753899ce 100644 --- a/md/UBERON/79/UBERON_0009479.md +++ b/md/UBERON/79/UBERON_0009479.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009479 * *Label* = ectoderm of buccopharyngeal membrane - * *Definition* = An ectoderm that is part of a buccopharyngeal membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An ectoderm that is part of a buccopharyngeal membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectoderm](../../UBERON/24/UBERON_0000924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [buccopharyngeal membrane](../../UBERON/11/UBERON_0006211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009579.md b/md/UBERON/79/UBERON_0009579.md index 189ec4f91b..4038e7b599 100644 --- a/md/UBERON/79/UBERON_0009579.md +++ b/md/UBERON/79/UBERON_0009579.md @@ -7,8 +7,8 @@ ## Synonyms - * basal plate myelencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000322] - * future myelencephalon basal plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000646] + * basal plate myelencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000322 ] + * future myelencephalon basal plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000646 ] ## Cross-references @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral half of the developing neural tube that is the myelencephalon. [Chordate_evolution_and_the_origin_of_craniates:_An_old_brain_in_a_new_head._AnaT_Rec_(New_Anat)_(2000)_261(3):_111-125, See_Butler_AB][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009679.md b/md/UBERON/79/UBERON_0009679.md index 63ad148525..bddfb46937 100644 --- a/md/UBERON/79/UBERON_0009679.md +++ b/md/UBERON/79/UBERON_0009679.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009679 * *Label* = set of lower jaw teeth - * *Definition* = A tooth row that is part of a skeleton of lower jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tooth row that is part of a skeleton of lower jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arcus dentalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lower dental arcade [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55635] - * lower jaw teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001029] - * set of all lower teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55635] - * mandibular dental arcade [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55635] + * arcus dentalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lower dental arcade [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55635 ] + * lower jaw teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001029 ] + * set of all lower teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55635 ] + * mandibular dental arcade [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55635 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [skeleton of lower jaw](../../UBERON/78/UBERON_0003278.md) and [tooth row](../../UBERON/78/UBERON_0009678.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009779.md b/md/UBERON/79/UBERON_0009779.md index ce1bffa38e..7162866987 100644 --- a/md/UBERON/79/UBERON_0009779.md +++ b/md/UBERON/79/UBERON_0009779.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009779 * *Label* = cardiac muscle tissue of right auricle - * *Definition* = A cardiac muscle tissue that is part of a right atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac muscle tissue that is part of a right atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle of right auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16826] - * right atrium auricular region heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004169] - * right auricular region myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000611] - * right auricular region cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000611] + * cardiac muscle of right auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16826 ] + * right atrium auricular region heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004169 ] + * right auricular region myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000611 ] + * right auricular region cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000611 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right atrium auricular region](../../UBERON/31/UBERON_0006631.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009879.md b/md/UBERON/79/UBERON_0009879.md index 940bf0ee59..5647cd864c 100644 --- a/md/UBERON/79/UBERON_0009879.md +++ b/md/UBERON/79/UBERON_0009879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009879 * *Label* = tarsal skeleton - * *Definition* = Subdivision of skeleton that consists of endochondral elements distal to the zeugopodial skeletal elements which constitute the proximal region of the posterior autopod skeleton[PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005024] + * *Definition* = Subdivision of skeleton that consists of endochondral elements distal to the zeugopodial skeletal elements which constitute the proximal region of the posterior autopod skeleton[PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005024 ] * *Comment* = Taxon notes: Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present[PHENOSCAPE:ad]. AO notes: we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent. ## Synonyms @@ -11,13 +11,13 @@ * hind mesopodial skeleton * hind mesopodium * hind mesopodium skeleton - * set of tarsal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71339] + * set of tarsal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71339 ] * skeletal parts of hind mesopodium - * tarsal bones set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71339] - * basipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005024] - * mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005024] + * tarsal bones set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71339 ] + * basipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005024 ] + * mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005024 ] * tarsal bones - * tarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003211] + * tarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003211 ] ## Cross-references @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the leg corresponding to the tarsus. It consists of several elements that articulate with the tibia and fibula at one end and the metatarsals at the other end.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0009979.md b/md/UBERON/79/UBERON_0009979.md index 39ffeade86..c50c711e28 100644 --- a/md/UBERON/79/UBERON_0009979.md +++ b/md/UBERON/79/UBERON_0009979.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009979 * *Label* = condyle - * *Definition* = An articular prominence of a bone, typically present in pairs, resembling a pair of knuckles. Examples: Condyle of humerus, condyle of femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/condyle] + * *Definition* = An articular prominence of a bone, typically present in pairs, resembling a pair of knuckles. Examples: Condyle of humerus, condyle of femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/condyle ] ## Synonyms - * condylus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Condyle_(anatomy)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * condylus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Condyle_(anatomy), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:75434 * SCTID:91737009 * TAO:0002259 - * UMLS:C0524414 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Condyle] + * UMLS:C0524414 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Condyle ] * Wikipedia:Condyle_(anatomy) * galen:Condyle * ncithesaurus:Condyle @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP][Wikipedia:Condyle_(anatomy)]. * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = condylar * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = condyloid - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0010279.md b/md/UBERON/79/UBERON_0010279.md index 98fb216229..f630e988e9 100644 --- a/md/UBERON/79/UBERON_0010279.md +++ b/md/UBERON/79/UBERON_0010279.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010279 * *Label* = pericardial sinus - * *Definition* = There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] + * *Definition* = There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] ## Synonyms - * oblique pericardial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] - * oblique pericardial sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] - * oblique sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] - * pericardial sinuses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] - * transverse pericardial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] - * transverse pericardial sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] + * oblique pericardial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] + * oblique pericardial sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] + * oblique sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] + * pericardial sinuses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] + * transverse pericardial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] + * transverse pericardial sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0010379.md b/md/UBERON/79/UBERON_0010379.md index c0e632ea5d..5fd703cb7d 100644 --- a/md/UBERON/79/UBERON_0010379.md +++ b/md/UBERON/79/UBERON_0010379.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010379 * *Label* = superior tarsal muscle - * *Definition* = The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle] + * *Definition* = The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle ] * *Comment* = Editors note: declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle) ## Synonyms - * Mueller's muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49058] - * Muller's muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle] - * Mller's muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle] - * mueller muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle] - * musculus tarsalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * the superior tarsal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_tarsal_muscle] + * Mueller's muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49058 ] + * Muller's muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle ] + * Mller's muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle ] + * mueller muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle ] + * musculus tarsalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * the superior tarsal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_tarsal_muscle ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0010579.md b/md/UBERON/79/UBERON_0010579.md index 026992983e..5a45451663 100644 --- a/md/UBERON/79/UBERON_0010579.md +++ b/md/UBERON/79/UBERON_0010579.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010579 * *Label* = manual digit 5 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 5 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 5 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5 mesenchyme](../../UBERON/95/UBERON_0005695.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0010679.md b/md/UBERON/79/UBERON_0010679.md index d5042f3ce3..9bba9b8b4e 100644 --- a/md/UBERON/79/UBERON_0010679.md +++ b/md/UBERON/79/UBERON_0010679.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010679 * *Label* = manual digit 5 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 5 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 5 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5 mesenchyme](../../UBERON/95/UBERON_0005695.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0010879.md b/md/UBERON/79/UBERON_0010879.md index a558778ed0..7244234fc2 100644 --- a/md/UBERON/79/UBERON_0010879.md +++ b/md/UBERON/79/UBERON_0010879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010879 * *Label* = tusk - * *Definition* = Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tusk] + * *Definition* = Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tusk ] * *Comment* = Consider adding separate classes for incisor and canine tusks. E.g. narwhal tusk = left upper incisor[Kardong] ## Synonyms @@ -33,8 +33,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_41426 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9705 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9823 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011079.md b/md/UBERON/79/UBERON_0011079.md index 456cda95d5..d03249807a 100644 --- a/md/UBERON/79/UBERON_0011079.md +++ b/md/UBERON/79/UBERON_0011079.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011079 * *Label* = angular bone - * *Definition* = Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001669[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Angular_bone] + * *Definition* = Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001669, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Angular_bone ] * *Comment* = The angular fuses with the articular bone in clupeocephalans forming the anguloarticular. ## Synonyms - * angular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000010] - * postoperculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000010] - * praearticulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000010] + * angular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000010 ] + * postoperculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000010 ] + * praearticulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000010 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011179.md b/md/UBERON/79/UBERON_0011179.md index d073f85fc5..cdcfbb6cc0 100644 --- a/md/UBERON/79/UBERON_0011179.md +++ b/md/UBERON/79/UBERON_0011179.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011179 * *Label* = transverse nucleus of stria terminalis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223 ] ## Synonyms - * bed nuclei of the stria terminalis, posterior division, transverse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BSTtr] - * transverse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000932] - * bed nuclei of the stria terminalis posterior division transverse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTtr] - * bed nuclei of the stria terminalis transverse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTtr] - * bed nucleus of the stria terminalis transverse nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BSTtr] + * bed nuclei of the stria terminalis, posterior division, transverse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BSTtr ] + * transverse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000932 ] + * bed nuclei of the stria terminalis posterior division transverse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTtr ] + * bed nuclei of the stria terminalis transverse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTtr ] + * bed nucleus of the stria terminalis transverse nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BSTtr ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011279.md b/md/UBERON/79/UBERON_0011279.md index 82b83053c1..726bab1a35 100644 --- a/md/UBERON/79/UBERON_0011279.md +++ b/md/UBERON/79/UBERON_0011279.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011279 * *Label* = nail of pedal digit 2 - * *Definition* = A nail that is part of a pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 2 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18740] - * nail of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54347] - * nail plate of second toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54347] - * second toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54347] + * claw of digit 2 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18740 ] + * nail of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54347 ] + * nail plate of second toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54347 ] + * second toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54347 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011379.md b/md/UBERON/79/UBERON_0011379.md index 56be38147c..3d7cb6aace 100644 --- a/md/UBERON/79/UBERON_0011379.md +++ b/md/UBERON/79/UBERON_0011379.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011379 * *Label* = male external urethral sphincter - * *Definition* = The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasci of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raph. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_male_urethra] + * *Definition* = The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasci of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raph. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_male_urethra ] * *Comment* = AO notes: MA includes a term bulboglandular - some sources claim this as the muscles that are associated with the bulbourethral gland, so we place this here ## Synonyms - * external urethral sphincter of male urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19733] - * male sphincter urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19733] - * male sphincter urethrae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19733] - * male urethral sphincter muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19733] - * musculus sphincter urethrae externus urethrae masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_male_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus sphincter urethrae membranaceae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_male_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bulboglandular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002273] + * external urethral sphincter of male urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19733 ] + * male sphincter urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19733 ] + * male sphincter urethrae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19733 ] + * male urethral sphincter muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19733 ] + * musculus sphincter urethrae externus urethrae masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_male_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus sphincter urethrae membranaceae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_male_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bulboglandular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002273 ] * bulboglandular muscle ## Cross-references * FMA:19733 * MA:0002273 - * UMLS:C1707060 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bulboglandular] + * UMLS:C1707060 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bulboglandular ] * Wikipedia:External_sphincter_muscle_of_male_urethra * ncithesaurus:Bulboglandular @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external urethral sphincter](../../UBERON/19/UBERON_0004919.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011579.md b/md/UBERON/79/UBERON_0011579.md index 384b3e8a48..a7d8b230aa 100644 --- a/md/UBERON/79/UBERON_0011579.md +++ b/md/UBERON/79/UBERON_0011579.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011579 * *Label* = venom gland - * *Definition* = A gland that secretes venom. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A gland that secretes venom. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note we include a separate class for snake venom glands ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [produces](../../RO/00/RO_0003000.md) some [venom](../../UBERON/13/UBERON_0007113.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7898 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8314 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9257 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011579 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011679.md b/md/UBERON/79/UBERON_0011679.md index 5a37f9f643..6095c64fc9 100644 --- a/md/UBERON/79/UBERON_0011679.md +++ b/md/UBERON/79/UBERON_0011679.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011679 * *Label* = proximal tarsal bone - * *Definition* = A tarsal bone that connected_to a hindlimb zeugopod skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tarsal bone that connected_to a hindlimb zeugopod skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [hindlimb zeugopod skeleton](../../UBERON/20/UBERON_0010720.md) and [tarsal bone](../../UBERON/47/UBERON_0001447.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011779.md b/md/UBERON/79/UBERON_0011779.md index 217c3a8977..08d20bf6eb 100644 --- a/md/UBERON/79/UBERON_0011779.md +++ b/md/UBERON/79/UBERON_0011779.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011779 * *Label* = nerve of head region - * *Definition* = A nerve that is part of a head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011879.md b/md/UBERON/79/UBERON_0011879.md index 663c234868..b6051f7181 100644 --- a/md/UBERON/79/UBERON_0011879.md +++ b/md/UBERON/79/UBERON_0011879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011879 * *Label* = mesorchium - * *Definition* = The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesorchium] + * *Definition* = The testes, at an early period of fetal life, are placed at the back part of the abdominal cavity, behind the peritoneum, and each is attached by a peritoneal fold, the mesorchium, to the mesonephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesorchium ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011879 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0011979.md b/md/UBERON/79/UBERON_0011979.md index 2b1e90bb4e..4009314c6d 100644 --- a/md/UBERON/79/UBERON_0011979.md +++ b/md/UBERON/79/UBERON_0011979.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011979 * *Label* = epiphysis of distal phalanx of manus - * *Definition* = An epiphysis that is part of a distal phalanx of manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a distal phalanx of manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manus](../../UBERON/65/UBERON_0003865.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011979 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0012079.md b/md/UBERON/79/UBERON_0012079.md index fdd79166f8..4a5a194d6f 100644 --- a/md/UBERON/79/UBERON_0012079.md +++ b/md/UBERON/79/UBERON_0012079.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0012179.md b/md/UBERON/79/UBERON_0012179.md index 07fdc6ccb9..6909b1b9b3 100644 --- a/md/UBERON/79/UBERON_0012179.md +++ b/md/UBERON/79/UBERON_0012179.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0012279.md b/md/UBERON/79/UBERON_0012279.md index 0097635b28..151a02e49e 100644 --- a/md/UBERON/79/UBERON_0012279.md +++ b/md/UBERON/79/UBERON_0012279.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012279 * *Label* = paraganglion - * *Definition* = Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224.736[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paraganglion] + * *Definition* = Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224.736, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paraganglion ] * *Comment* = Editors note: unrevised ## Synonyms - * chromaffin body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224.736] - * chromaffin paraganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224.736[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * chromaffin paraganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A06.224.736] + * chromaffin body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224.736 ] + * chromaffin paraganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224.736, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * chromaffin paraganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A06.224.736 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:15648 * MESH:A06.224.736 * SCTID:329735008 - * UMLS:C0030419 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Paraganglion] + * UMLS:C0030419 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Paraganglion ] * Wikipedia:Paraganglion * ncithesaurus:Paraganglion @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0012479.md b/md/UBERON/79/UBERON_0012479.md index 59b0bdd735..07b130f1b3 100644 --- a/md/UBERON/79/UBERON_0012479.md +++ b/md/UBERON/79/UBERON_0012479.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urodeum](../../UBERON/21/UBERON_0012421.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0013179.md b/md/UBERON/79/UBERON_0013179.md index a6e3082a7e..e1298321e8 100644 --- a/md/UBERON/79/UBERON_0013179.md +++ b/md/UBERON/79/UBERON_0013179.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013179 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0013279.md b/md/UBERON/79/UBERON_0013279.md index 009db2cf74..0dfa0ef9b8 100644 --- a/md/UBERON/79/UBERON_0013279.md +++ b/md/UBERON/79/UBERON_0013279.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013279 * *Label* = diaphysis of fibula - * *Definition* = A diaphysis that is part of a fibula[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_fibula] + * *Definition* = A diaphysis that is part of a fibula[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_fibula ] ## Synonyms - * body of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33738] - * corpus fibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * fibula diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33738] - * shaft of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33738] + * body of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33738 ] + * corpus fibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * fibula diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33738 ] + * shaft of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33738 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fibula](../../UBERON/46/UBERON_0001446.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body of fibula presents four borders - the antero-lateral, the antero-medial, the postero-lateral, and the postero-medial; and four surfaces - anterior, posterior, medial, and lateral[Wikipedia:Body_of_fibula]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013279 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0013479.md b/md/UBERON/79/UBERON_0013479.md index e17a538e96..757c12824b 100644 --- a/md/UBERON/79/UBERON_0013479.md +++ b/md/UBERON/79/UBERON_0013479.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013479 * *Label* = lung endothelium - * *Definition* = A blood vessel endothelium that is part of a lung [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel endothelium that is part of a lung [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * respiratory endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004128] + * respiratory endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004128 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel endothelium](../../UBERON/38/UBERON_0004638.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0013679.md b/md/UBERON/79/UBERON_0013679.md index 263b396f1c..8901e601d9 100644 --- a/md/UBERON/79/UBERON_0013679.md +++ b/md/UBERON/79/UBERON_0013679.md @@ -8,7 +8,7 @@ * right inner canthus * right medial canthus - * right medial palpebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59319] + * right medial palpebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59319 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inner canthus](../../UBERON/11/UBERON_0005611.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right eye](../../UBERON/49/UBERON_0004549.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0014379.md b/md/UBERON/79/UBERON_0014379.md index c5bdd08ecb..527a875077 100644 --- a/md/UBERON/79/UBERON_0014379.md +++ b/md/UBERON/79/UBERON_0014379.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014379 * *Label* = adductor hallucis muscle - * *Definition* = The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_hallucis_muscle] + * *Definition* = The Adductor hallucis (Adductor obliquus hallucis) arises by two headsboblique and transverse and is responsible for adducting the big toe. It is innervated by the lateral plantar nerve. It evolved from the contrahens I muscle as Man's ancestors' thumbs and big toes became opposable. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_hallucis_muscle ] ## Synonyms - * adductor hallucis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37454] - * adductor hallucis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_hallucis_muscle] - * adductor transversus hallucis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adductor_hallucis_muscle] + * adductor hallucis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37454 ] + * adductor hallucis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_hallucis_muscle ] + * adductor transversus hallucis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adductor_hallucis_muscle ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014379 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0014479.md b/md/UBERON/79/UBERON_0014479.md index c7a44cd096..e48797eb57 100644 --- a/md/UBERON/79/UBERON_0014479.md +++ b/md/UBERON/79/UBERON_0014479.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014479 * *Label* = elephant trunk - * *Definition* = An appendage formed by the fusion of the nose and upper lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Elephant#Trunk] + * *Definition* = An appendage formed by the fusion of the nose and upper lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Elephant#Trunk ] ## Synonyms * trunk of elephant * proboscis - * trunk [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * trunk [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014479 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0014679.md b/md/UBERON/79/UBERON_0014679.md index 62d33d308b..28dad91ea8 100644 --- a/md/UBERON/79/UBERON_0014679.md +++ b/md/UBERON/79/UBERON_0014679.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014679 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0014779.md b/md/UBERON/79/UBERON_0014779.md index 7761d4940e..eaf61053dc 100644 --- a/md/UBERON/79/UBERON_0014779.md +++ b/md/UBERON/79/UBERON_0014779.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [reticuloendothelial system](../../UBERON/63/UBERON_0000363.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014779 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_0015079.md b/md/UBERON/79/UBERON_0015079.md index d772dec506..4eec5c7e95 100644 --- a/md/UBERON/79/UBERON_0015079.md +++ b/md/UBERON/79/UBERON_0015079.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [proximal carpal endochondral element](../../UBERON/78/UBERON_0015078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015079 + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2000379.md b/md/UBERON/79/UBERON_2000379.md index a50548218e..8af75425e8 100644 --- a/md/UBERON/79/UBERON_2000379.md +++ b/md/UBERON/79/UBERON_2000379.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2000479.md b/md/UBERON/79/UBERON_2000479.md index ed9f5c98fd..e642ac33bc 100644 --- a/md/UBERON/79/UBERON_2000479.md +++ b/md/UBERON/79/UBERON_2000479.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2000579.md b/md/UBERON/79/UBERON_2000579.md index f32747bc1e..cd93126d1a 100644 --- a/md/UBERON/79/UBERON_2000579.md +++ b/md/UBERON/79/UBERON_2000579.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2000779.md b/md/UBERON/79/UBERON_2000779.md index e186553cca..50753603a1 100644 --- a/md/UBERON/79/UBERON_2000779.md +++ b/md/UBERON/79/UBERON_2000779.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2000879.md b/md/UBERON/79/UBERON_2000879.md index 2f57643978..1e8b478602 100644 --- a/md/UBERON/79/UBERON_2000879.md +++ b/md/UBERON/79/UBERON_2000879.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000879[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000879, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/79/UBERON_2000979.md b/md/UBERON/79/UBERON_2000979.md index f6dab6af5c..19c9e9c1fb 100644 --- a/md/UBERON/79/UBERON_2000979.md +++ b/md/UBERON/79/UBERON_2000979.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000979 * *Label* = hypaxial region somite 24 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001179.md b/md/UBERON/79/UBERON_2001179.md index 4ac6078f55..bdcb5d3a9a 100644 --- a/md/UBERON/79/UBERON_2001179.md +++ b/md/UBERON/79/UBERON_2001179.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001279.md b/md/UBERON/79/UBERON_2001279.md index 2482b591d3..bd5dc850cd 100644 --- a/md/UBERON/79/UBERON_2001279.md +++ b/md/UBERON/79/UBERON_2001279.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001279 * *Label* = branchiostegal ray 1 - * *Definition* = Branchiostegal ray that is the anterior-most ray in the adult. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Branchiostegal ray that is the anterior-most ray in the adult. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001379.md b/md/UBERON/79/UBERON_2001379.md index d24049b8bc..83cbfe77ea 100644 --- a/md/UBERON/79/UBERON_2001379.md +++ b/md/UBERON/79/UBERON_2001379.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001579.md b/md/UBERON/79/UBERON_2001579.md index 680701446e..b06cfd609b 100644 --- a/md/UBERON/79/UBERON_2001579.md +++ b/md/UBERON/79/UBERON_2001579.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001579 * *Label* = ural vertebra 2 - * *Definition* = Ural vertebra that is the second vertebra posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 2 (polyural terminology). Ural vertebra 2 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Ural vertebra that is the second vertebra posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 2 (polyural terminology). Ural vertebra 2 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Ural vertebrae 2 may be defined also as the second ural vertebrae bearing hypurals 3 or 3 and 4 or 3 plus more dorsal hypurals (diural terminology). ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001679.md b/md/UBERON/79/UBERON_2001679.md index 319c5f19d3..b0bc2c58c3 100644 --- a/md/UBERON/79/UBERON_2001679.md +++ b/md/UBERON/79/UBERON_2001679.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001679 * *Label* = mesethmoid-lateral ethmoid joint - * *Definition* = Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [lateral ethmoid](../../UBERON/26/UBERON_2000226.md) and [core#connects](../../ts/core#connects.md) some [mesethmoid bone](../../UBERON/38/UBERON_0011238.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001779.md b/md/UBERON/79/UBERON_2001779.md index 54308eaec1..c0f7f255a2 100644 --- a/md/UBERON/79/UBERON_2001779.md +++ b/md/UBERON/79/UBERON_2001779.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001879.md b/md/UBERON/79/UBERON_2001879.md index 77f74fa825..50bb32fad0 100644 --- a/md/UBERON/79/UBERON_2001879.md +++ b/md/UBERON/79/UBERON_2001879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001879 * *Label* = rib of vertebra 1 - * *Definition* = Rib that articulates with the parapophysis of the first centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the first centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2001979.md b/md/UBERON/79/UBERON_2001979.md index 0044484498..87899e229f 100644 --- a/md/UBERON/79/UBERON_2001979.md +++ b/md/UBERON/79/UBERON_2001979.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001979 * *Label* = hyomandibula-metapterygoid joint - * *Definition* = Joint that articulates the hyomandibula bone and metapterygoid bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the hyomandibula bone and metapterygoid bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [hyomandibular bone](../../UBERON/06/UBERON_0011606.md) and [core#connects](../../ts/core#connects.md) some [metapterygoid](../../UBERON/40/UBERON_2000240.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2002079.md b/md/UBERON/79/UBERON_2002079.md index 499aed69c2..0db129c962 100644 --- a/md/UBERON/79/UBERON_2002079.md +++ b/md/UBERON/79/UBERON_2002079.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002079 * *Label* = leptocephalous larva - * *Definition* = Larval stage in some teleosts before metomorphosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Larval stage in some teleosts before metomorphosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2002179.md b/md/UBERON/79/UBERON_2002179.md index 0599a802ca..05d8c0e29d 100644 --- a/md/UBERON/79/UBERON_2002179.md +++ b/md/UBERON/79/UBERON_2002179.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002179 * *Label* = obsolete peripheral nucleus of ventral telencephalon - * *Definition* = Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/79/UBERON_2002279.md b/md/UBERON/79/UBERON_2002279.md index d97f22e551..9101f334c6 100644 --- a/md/UBERON/79/UBERON_2002279.md +++ b/md/UBERON/79/UBERON_2002279.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002279 * *Label* = pectoral fin distal radial bone 2 - * *Definition* = pectoral fin distal radial 2 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 2 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin distal radial element 2](../../UBERON/79/UBERON_2102279.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2005079.md b/md/UBERON/79/UBERON_2005079.md index cd7c6ab920..5bfabeb920 100644 --- a/md/UBERON/79/UBERON_2005079.md +++ b/md/UBERON/79/UBERON_2005079.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005079 * *Label* = posterior mesencephalic central artery - * *Definition* = Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * PMCtA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005079] - * caudal mesencephalic central artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005079] + * PMCtA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005079 ] + * caudal mesencephalic central artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005079 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2005179.md b/md/UBERON/79/UBERON_2005179.md index b2af6c5405..38e2aad1cd 100644 --- a/md/UBERON/79/UBERON_2005179.md +++ b/md/UBERON/79/UBERON_2005179.md @@ -7,7 +7,7 @@ ## Synonyms - * middle primary motoneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005179] + * middle primary motoneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005179 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/79/UBERON_2005279.md b/md/UBERON/79/UBERON_2005279.md index bd8e61102e..ff4d34690c 100644 --- a/md/UBERON/79/UBERON_2005279.md +++ b/md/UBERON/79/UBERON_2005279.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005279 * *Label* = enteric circular muscle - * *Definition* = Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2005379.md b/md/UBERON/79/UBERON_2005379.md index ba956f8bbb..edc71f22bd 100644 --- a/md/UBERON/79/UBERON_2005379.md +++ b/md/UBERON/79/UBERON_2005379.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005379 * *Label* = dorsal fin distal radial bone 8 - * *Definition* = dorsal fin distal radial 8 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 8 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin distal radial element 8](../../UBERON/79/UBERON_2105379.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2102279.md b/md/UBERON/79/UBERON_2102279.md index f836309fdc..d729baae32 100644 --- a/md/UBERON/79/UBERON_2102279.md +++ b/md/UBERON/79/UBERON_2102279.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2105379.md b/md/UBERON/79/UBERON_2105379.md index 5d0c6bb2fa..aebcbf8d44 100644 --- a/md/UBERON/79/UBERON_2105379.md +++ b/md/UBERON/79/UBERON_2105379.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin distal radial element](../../UBERON/36/UBERON_2100936.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 8](../../UBERON/71/UBERON_2005371.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2202279.md b/md/UBERON/79/UBERON_2202279.md index c9df713c60..23ecdb6e70 100644 --- a/md/UBERON/79/UBERON_2202279.md +++ b/md/UBERON/79/UBERON_2202279.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202279 * *Label* = pectoral fin distal radial cartilage 2 - * *Definition* = pectoral fin distal radial 2 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 2 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin distal radial element 2](../../UBERON/79/UBERON_2102279.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_2205379.md b/md/UBERON/79/UBERON_2205379.md index f00da9c73e..a697f81435 100644 --- a/md/UBERON/79/UBERON_2205379.md +++ b/md/UBERON/79/UBERON_2205379.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205379 * *Label* = dorsal fin distal radial cartilage 8 - * *Definition* = dorsal fin distal radial 8 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin distal radial 8 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin distal radial element 8](../../UBERON/79/UBERON_2105379.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3000079.md b/md/UBERON/79/UBERON_3000079.md index 8fa9e1e584..861f68453d 100644 --- a/md/UBERON/79/UBERON_3000079.md +++ b/md/UBERON/79/UBERON_3000079.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3000179.md b/md/UBERON/79/UBERON_3000179.md index e6b798287d..527cfba51b 100644 --- a/md/UBERON/79/UBERON_3000179.md +++ b/md/UBERON/79/UBERON_3000179.md @@ -6,7 +6,7 @@ ## Synonyms - * acoustic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000179] + * acoustic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000179 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3000779.md b/md/UBERON/79/UBERON_3000779.md index 1c9d91bcc5..cc60df2233 100644 --- a/md/UBERON/79/UBERON_3000779.md +++ b/md/UBERON/79/UBERON_3000779.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000779 * *Label* = pectoral fenestra - * *Definition* = Ovoid space on the pectoral girdle limited anteriorly by the procoracoid, medially by the epicoracoid, and posteriorly by the coracoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ovoid space on the pectoral girdle limited anteriorly by the procoracoid, medially by the epicoracoid, and posteriorly by the coracoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * fenestra between procoracoid and coracoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000779] + * fenestra between procoracoid and coracoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000779 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3000879.md b/md/UBERON/79/UBERON_3000879.md index 53243aa3cd..13e94aa319 100644 --- a/md/UBERON/79/UBERON_3000879.md +++ b/md/UBERON/79/UBERON_3000879.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000879 * *Label* = incisura terminalis - * *Definition* = Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3010079.md b/md/UBERON/79/UBERON_3010079.md index 15eb483b3a..4065554699 100644 --- a/md/UBERON/79/UBERON_3010079.md +++ b/md/UBERON/79/UBERON_3010079.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3010179.md b/md/UBERON/79/UBERON_3010179.md index e3254cb6f1..12604c1033 100644 --- a/md/UBERON/79/UBERON_3010179.md +++ b/md/UBERON/79/UBERON_3010179.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_3010379.md b/md/UBERON/79/UBERON_3010379.md index 6410354c9b..58d660e508 100644 --- a/md/UBERON/79/UBERON_3010379.md +++ b/md/UBERON/79/UBERON_3010379.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010379 * *Label* = inner fin tissue - * *Definition* = Part of the fin consisting of a supporting core of mesenchyme and extracellular matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15188431] + * *Definition* = Part of the fin consisting of a supporting core of mesenchyme and extracellular matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15188431 ] ## Synonyms @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_4200079.md b/md/UBERON/79/UBERON_4200079.md index fdcdf2c36c..a232f34b37 100644 --- a/md/UBERON/79/UBERON_4200079.md +++ b/md/UBERON/79/UBERON_4200079.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/79/UBERON_4200179.md b/md/UBERON/79/UBERON_4200179.md index 2aafd4dbba..d0a27c603a 100644 --- a/md/UBERON/79/UBERON_4200179.md +++ b/md/UBERON/79/UBERON_4200179.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0000080.md b/md/UBERON/80/UBERON_0000080.md index a6d7ceb0ff..240a3aaa36 100644 --- a/md/UBERON/80/UBERON_0000080.md +++ b/md/UBERON/80/UBERON_0000080.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000080 * *Label* = mesonephros - * *Definition* = In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001823[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephros] + * *Definition* = In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001823, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephros ] * *Comment* = By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP] comment: Taxon notes: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain[WP] ## Synonyms - * Wolffian body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001542[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:yaf[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A16.254.500[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephros] - * mesonephric kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000141] - * mesonephroi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * corpus Wolffi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001542] - * middle kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001542] - * opisthonephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000038[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000141] + * Wolffian body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001542, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:yaf, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A16.254.500, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephros ] + * mesonephric kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000141 ] + * mesonephroi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * corpus Wolffi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001542 ] + * middle kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001542 ] + * opisthonephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000038, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000141 ] * opisto nephros - * opistonephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] + * opistonephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html ] ## Cross-references @@ -34,7 +34,7 @@ * MESH:A16.254.500 * SCTID:308799002 * TAO:0000529 - * UMLS:C0025492 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesonephros] + * UMLS:C0025492 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesonephros ] * VHOG:0000038 * Wikipedia:Mesonephros * XAO:0000141 @@ -68,8 +68,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As the pronephros regresses, the archinephric duct induces the sequential differentiation of tubules in the more caudal parts of the nephric ridge. (...) Tubules that differentiate in the middle part of the nephric ridge form a kidney called the mesonephros. This kidney functions in the embryos and larvae of all vertebrates. (...) In all vertebrate embryos, the kidney begins with the differentiation of a few renal tubules from the anterior end of the nephric ridge overlying the pericardial cavity. (...) This early-developing embryonic kidney is called the pronephros.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesonephric * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0000180.md b/md/UBERON/80/UBERON_0000180.md index 1c74008cca..1296fa5984 100644 --- a/md/UBERON/80/UBERON_0000180.md +++ b/md/UBERON/80/UBERON_0000180.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000180 * *Label* = lateral lumbar region of abdomen - * *Definition* = a region of the posterior torso (lower back) beneath the ribs and above the ilium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdomen#9-region_scheme[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Latus_(anatomy)] + * *Definition* = a region of the posterior torso (lower back) beneath the ribs and above the ilium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdomen#9-region_scheme, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Latus_(anatomy) ] ## Synonyms - * flank [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Latus_(anatomy)] - * lateral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14603] - * lateral region of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14603] - * latus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14603] - * regio lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14603] + * flank [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Latus_(anatomy) ] + * lateral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14603 ] + * lateral region of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14603 ] + * latus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14603 ] + * regio lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14603 ] ## Cross-references * CALOHA:TS-2336 * FMA:14603 * SCTID:243329008 - * UMLS:C0230171 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flank] + * UMLS:C0230171 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flank ] * Wikipedia:Latus_(anatomy) * galen:Flank * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1220.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0000380.md b/md/UBERON/80/UBERON_0000380.md index e8ff9bf1ac..f4bf210f60 100644 --- a/md/UBERON/80/UBERON_0000380.md +++ b/md/UBERON/80/UBERON_0000380.md @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EFO:0001015 * *[consider](../../er/oboInOwl#consider.md)* = FMA:75430 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000380 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_0000480.md b/md/UBERON/80/UBERON_0000480.md index ead2786dd0..33a09df81c 100644 --- a/md/UBERON/80/UBERON_0000480.md +++ b/md/UBERON/80/UBERON_0000480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000480 * *Label* = anatomical group - * *Definition* = Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000054[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000054, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0000980.md b/md/UBERON/80/UBERON_0000980.md index 46000fb4cf..767a0590f1 100644 --- a/md/UBERON/80/UBERON_0000980.md +++ b/md/UBERON/80/UBERON_0000980.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000980 * *Label* = trochanter - * *Definition* = bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trochanter] + * *Definition* = bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trochanter ] ## Synonyms - * femoral trochanter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000897] + * femoral trochanter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000897 ] * trochanter of femur ## Cross-references @@ -16,7 +16,7 @@ * FMA:82513 * MA:0002821 * SCTID:182047004 - * UMLS:C0162370 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trochanter] + * UMLS:C0162370 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trochanter ] * Wikipedia:Trochanter * ncithesaurus:Trochanter @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Process on the ventral surface of the shaft of the femur.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001080.md b/md/UBERON/80/UBERON_0001080.md index 2cdce469cc..18e62e1803 100644 --- a/md/UBERON/80/UBERON_0001080.md +++ b/md/UBERON/80/UBERON_0001080.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001080 * *Label* = inferior articular process of vertebra - * *Definition* = Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] * *Comment* = TODO - add distinct classes for hemal vs neural? ## Synonyms * caudal articular process of vertebra - * neural postzygopophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000681] + * neural postzygopophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000681 ] * postzygapophysis * processus articularis inferior * vertebra caudal articular process - * neural postzygapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000681] - * neural postzygapophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000681[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * neural postzygopophyses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000681] - * processus obliquus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000702] + * neural postzygapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000681 ] + * neural postzygapophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000681, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * neural postzygopophyses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000681 ] + * processus obliquus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000702 ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001180.md b/md/UBERON/80/UBERON_0001180.md index d50b26d2cb..280c59ba0e 100644 --- a/md/UBERON/80/UBERON_0001180.md +++ b/md/UBERON/80/UBERON_0001180.md @@ -7,13 +7,13 @@ ## Synonyms - * omental bursa superior recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000447] - * recessus superior bursae omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14708[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recessus superior bursae omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recessus superior omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14708] - * superior omental bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14708] - * superior recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001958] - * superior recess of omental bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14708] + * omental bursa superior recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000447 ] + * recessus superior bursae omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14708, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recessus superior bursae omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recessus superior omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14708 ] + * superior omental bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14708 ] + * superior recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001958 ] + * superior recess of omental bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14708 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006299 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001280.md b/md/UBERON/80/UBERON_0001280.md index 69087b9ebc..b1b966f7d0 100644 --- a/md/UBERON/80/UBERON_0001280.md +++ b/md/UBERON/80/UBERON_0001280.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001280 * *Label* = liver parenchyma - * *Definition* = the functional units of the liver including the lobules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008986] + * *Definition* = the functional units of the liver including the lobules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008986 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * hepatic parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17540] - * liver parenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000454] - * parenchyma of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17540] - * hepatic parenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000539] + * hepatic parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17540 ] + * liver parenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000454 ] + * parenchyma of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17540 ] + * hepatic parenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000539 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = the (liver) tubular structure (dual layered parenchyma) appears to be conserved among all embryonic vertebrates (...) it is not unlikely that all vertebrate livers share the same fundamental functional unit.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003223 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001380.md b/md/UBERON/80/UBERON_0001380.md index 0cf6fe4fb8..fe05314ef0 100644 --- a/md/UBERON/80/UBERON_0001380.md +++ b/md/UBERON/80/UBERON_0001380.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001380 * *Label* = vastus medialis - * *Definition* = The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vastus_medialis] + * *Definition* = The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vastus_medialis ] ## Synonyms * vastus medialis muscle * medialis - * vastus internus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004913] + * vastus internus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004913 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001480.md b/md/UBERON/80/UBERON_0001480.md index f31cbcea88..f423716515 100644 --- a/md/UBERON/80/UBERON_0001480.md +++ b/md/UBERON/80/UBERON_0001480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001480 * *Label* = proximal carpal bone - * *Definition* = A carpal bone that proximally_connected_to a forelimb zeugopod skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A carpal bone that proximally_connected_to a forelimb zeugopod skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [proximal carpal endochondral element](../../UBERON/78/UBERON_0015078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001580.md b/md/UBERON/80/UBERON_0001580.md index 0e6a91ac91..1acaefeaac 100644 --- a/md/UBERON/80/UBERON_0001580.md +++ b/md/UBERON/80/UBERON_0001580.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001580 * *Label* = levator labii superioris - * *Definition* = The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris] + * *Definition* = The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * musculus levator labii superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus levator labii superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46805 * MA:0002333 - * UMLS:C1704248 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Levator_Labii_Superioris] + * UMLS:C1704248 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Levator_Labii_Superioris ] * Wikipedia:Levator_labii_superioris * http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png * http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001680.md b/md/UBERON/80/UBERON_0001680.md index d4c26ebf8d..f638b71af7 100644 --- a/md/UBERON/80/UBERON_0001680.md +++ b/md/UBERON/80/UBERON_0001680.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001680 * *Label* = lacrimal bone - * *Definition* = the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_bone] + * *Definition* = the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_bone ] * *Comment* = In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[WP, ISBN 0-03-910284-X] ## Synonyms @@ -11,18 +11,18 @@ * lachrymal bone * lacrymal bone * lacrimal - * infraorbital 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TODO:TODO[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001149[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000223[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lachrymal bone - infraorbital 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001149] - * lacrimal - infraorbital 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001149] - * lacrymal bone - infraorbital 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001149] - * os lacrimale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * infraorbital 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TODO:TODO, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001149, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000223, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lachrymal bone - infraorbital 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001149 ] + * lacrimal - infraorbital 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001149 ] + * lacrymal bone - infraorbital 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001149 ] + * os lacrimale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:52741 * MA:0001486 * SCTID:272675007 - * UMLS:C0222733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lacrimal_Bone] + * UMLS:C0222733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lacrimal_Bone ] * VHOG:0001149 * Wikipedia:Lacrimal_bone * http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png @@ -40,7 +40,7 @@ * [dermal bone](../../UBERON/07/UBERON_0008907.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) * [in_lateral_side_of](../../BSPO/26/BSPO_0000126.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) ## Equivalencies @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The infraorbital bone 1 of actinopterygians is homologous with the lacrimal bone (...).[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8292 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001780.md b/md/UBERON/80/UBERON_0001780.md index 399466d197..16ed454794 100644 --- a/md/UBERON/80/UBERON_0001780.md +++ b/md/UBERON/80/UBERON_0001780.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001780 * *Label* = spinal nerve - * *Definition* = Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_nerve] + * *Definition* = Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * backbone nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of backbone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of spinal column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve of vertebral column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal column nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * backbone nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of backbone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of spinal column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve of vertebral column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal column nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * spinal nerve tree - * spine nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebral column nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Spinal nerves [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:spin] - * nervi spinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * spine nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebral column nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Spinal nerves [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:spin ] + * nervi spinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,7 +34,7 @@ * NeuroNames:1228 * OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA * SCTID:361099009 - * UMLS:C0037941 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Nerve] + * UMLS:C0037941 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Nerve ] * VHOG:0000824 * Wikipedia:Spinal_nerve * XAO:0003101 @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the paired nerves emerging from the spinal cord, each attached to the cord by two roots: ventral and dorsal, and passing out between the vertebrae. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001880.md b/md/UBERON/80/UBERON_0001880.md index 6bdf999078..97585b6908 100644 --- a/md/UBERON/80/UBERON_0001880.md +++ b/md/UBERON/80/UBERON_0001880.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001880 * *Label* = bed nucleus of stria terminalis - * *Definition* = A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + INCF:Seattle_mtg_2010[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis] + * *Definition* = A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = INCF:Seattle_mtg_2010, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis ] ## Synonyms - * bed nucleus of the stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_724] - * bed nucleus stria terminalis (johnson) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_724] + * bed nucleus of the stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_724 ] + * bed nucleus stria terminalis (johnson) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_724 ] * intercalate nucleus of stria terminalis - * interstitial nucleus of stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_724] + * interstitial nucleus of stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_724 ] * nuclei of stria terminalis - * nucleus of stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61884] - * nucleus striae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61884[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus of stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61884 ] + * nucleus striae terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61884, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stria terminalis nucleus - * BST [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + INCF:Seattle_mtg_2010] - * bed nuclei of the stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BST] - * nucleus interstitialis striae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:267[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the stria terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:267] - * nucleus proprius stria terminalis (bed nucleus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BST] + * BST [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = INCF:Seattle_mtg_2010 ] + * bed nuclei of the stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BST ] + * nucleus interstitialis striae terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:267, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the stria terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:267 ] + * nucleus proprius stria terminalis (bed nucleus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BST ] ## Cross-references @@ -36,8 +36,8 @@ * FMA:61884 * MA:0000925 * NIF_GrossAnatomy:birnlex_724 - * NeuroNames:267 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_724] - * UMLS:C0228365 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_724] + * NeuroNames:267 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_724 ] + * UMLS:C0228365 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_724 ] * Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis ## Subsets @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0001980.md b/md/UBERON/80/UBERON_0001980.md index e306f78d35..e363b3abfb 100644 --- a/md/UBERON/80/UBERON_0001980.md +++ b/md/UBERON/80/UBERON_0001980.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001980 * *Label* = arteriole - * *Definition* = the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63182[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0014830[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arteriole] + * *Definition* = the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63182, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0014830, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arteriole ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteriola [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Arteriole[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriola [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Arteriole, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MESH:A07.231.114.060 * SCTID:337724002 * TAO:0002138 - * UMLS:C0003847 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Arteriole] + * UMLS:C0003847 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Arteriole ] * VHOG:0001763 * Wikipedia:Arteriole * ZFA:0005255 @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure part of the blood vasculature, feeds into capillaries. Arterioles carry blood away from the heart.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Small, terminal branch of an artery which generally connects to capillaries.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002080.md b/md/UBERON/80/UBERON_0002080.md index e6b1fa576a..518804f6a5 100644 --- a/md/UBERON/80/UBERON_0002080.md +++ b/md/UBERON/80/UBERON_0002080.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002080 * *Label* = heart right ventricle - * *Definition* = Right cardiac chamber which is continuous with the pulmonary arterial trunk.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_ventricle] + * *Definition* = Right cardiac chamber which is continuous with the pulmonary arterial trunk.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_ventricle ] ## Synonyms * cardiac right ventricle - * right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7098] + * right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7098 ] * right ventricle of heart - * ventriculus dexter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventriculus dexter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA * SCTID:244384009 - * UMLS:C0225883 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Ventricle] + * UMLS:C0225883 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Ventricle ] * VHOG:0000717 * Wikipedia:Right_ventricle * galen:RightVentricle @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002180.md b/md/UBERON/80/UBERON_0002180.md index f9f6a4c11a..616c6596b8 100644 --- a/md/UBERON/80/UBERON_0002180.md +++ b/md/UBERON/80/UBERON_0002180.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002180 * *Label* = ventral funiculus - * *Definition* = The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_funiculus] + * *Definition* = The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_funiculus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * anterior funiculus * anterior funiculus of spinal cord - * anterior white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74003] - * funiculus anterior medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74003 ] + * funiculus anterior medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ventral funiculus of spinal cord - * ventral white column of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74003] + * ventral white column of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74003 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002280.md b/md/UBERON/80/UBERON_0002280.md index 939102600e..de37dd94e8 100644 --- a/md/UBERON/80/UBERON_0002280.md +++ b/md/UBERON/80/UBERON_0002280.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002280 * *Label* = otolith - * *Definition* = Acellular structure composed of calcium carbonate located in the otolith organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Otolith[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Acellular structure composed of calcium carbonate located in the otolith organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Otolith, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Currently represented as part of the otolith membrane, but they may also be considered to be embedded in this membrane ## Synonyms - * otoconia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * otoconia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * otoconium - * otoliths [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * otoliths [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * statoconium * immature otolith * immature otoliths - * otoconial crystal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002894] + * otoconial crystal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002894 ] * statolith ## Cross-references @@ -24,7 +24,7 @@ * FMA:77826 * SCTID:368951003 * TAO:0001621 - * UMLS:C0029894 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Otolith] + * UMLS:C0029894 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Otolith ] * Wikipedia:Otolith * ZFA:0001617 * http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg @@ -58,8 +58,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from immature otolith (TAO:0000139)[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = otoconial * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = otolithic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002380.md b/md/UBERON/80/UBERON_0002380.md index 56d2102166..0a00b8a3d0 100644 --- a/md/UBERON/80/UBERON_0002380.md +++ b/md/UBERON/80/UBERON_0002380.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002380 * *Label* = trapezius muscle - * *Definition* = In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezius_muscle] + * *Definition* = In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezius_muscle ] ## Synonyms * trapezius - * musculus trapezius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinotrapezius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trapezius_muscle] + * musculus trapezius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinotrapezius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trapezius_muscle ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:9626 * MA:0002398 * SCTID:181740005 - * UMLS:C0224361 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trapezius_Muscle] + * UMLS:C0224361 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trapezius_Muscle ] * VHOG:0000834 * Wikipedia:Trapezius_muscle * http://upload.wikimedia.org/wikipedia/commons/6/60/Trapezius.png @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The sternomastoid and the three parts of the trapezius are branchiomeric muscles that have secondarily acquired an attachment to the pectoral girdle. They evolved from the fish cucullaris.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002480.md b/md/UBERON/80/UBERON_0002480.md index eacdb69977..ac6a0dd55d 100644 --- a/md/UBERON/80/UBERON_0002480.md +++ b/md/UBERON/80/UBERON_0002480.md @@ -6,26 +6,26 @@ ## Synonyms - * corpus geniculatum externum, nucleus accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * corpus geniculatum laterale, pars oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * dorsal_nucleus_of_lateral_geniculate_body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * griseum praegeniculatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] + * corpus geniculatum externum, nucleus accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * corpus geniculatum laterale, pars oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * dorsal_nucleus_of_lateral_geniculate_body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * griseum praegeniculatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] * lateral geniculate complex, ventral part - * lateral geniculate complex, ventral part (kolliker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * lateral geniculate nucleus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * nucleus corporis geniculati lateralis, pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * nucleus praegeniculatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * nucleus pregeniculatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * nucleus pregeniculatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62215[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis corporis geniculati lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62215[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * praegeniculatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] + * lateral geniculate complex, ventral part (kolliker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * lateral geniculate nucleus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * nucleus corporis geniculati lateralis, pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * nucleus praegeniculatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * nucleus pregeniculatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * nucleus pregeniculatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62215, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis corporis geniculati lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62215, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * praegeniculatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] * pregeniculate nucleus - * ventral part of the lateral geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1597] - * DLG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1597[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral geniculate complex, ventral part (Kvlliker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:354] - * lateral geniculate nucleus ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LGv] - * nucleus geniculatus lateralis pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:354[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral nucleus of lateral geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002776] + * ventral part of the lateral geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1597 ] + * DLG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1597, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral geniculate complex, ventral part (Kvlliker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:354 ] + * lateral geniculate nucleus ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LGv ] + * nucleus geniculatus lateralis pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:354, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral nucleus of lateral geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002776 ] ## Cross-references @@ -39,8 +39,8 @@ * FMA:62215 * MA:0002776 * NIF_GrossAnatomy:birnlex_1597 - * NeuroNames:354 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1597] - * UMLS:C0175293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1597] + * NeuroNames:354 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1597 ] + * UMLS:C0175293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1597 ] ## Subsets @@ -58,8 +58,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002580.md b/md/UBERON/80/UBERON_0002580.md index 672bcf3c40..fbbf5b0a0a 100644 --- a/md/UBERON/80/UBERON_0002580.md +++ b/md/UBERON/80/UBERON_0002580.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002580 * *Label* = brachium of superior colliculus - * *Definition* = Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1065] + * *Definition* = Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1065 ] ## Synonyms - * superior brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72417] - * superior collicular brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72417] - * superior colliculus brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72417] - * superior quadrigeminal brachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72417] - * brachium colliculi cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:474[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brachium colliculi rostralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:474[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brachium colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachium_of_superior_colliculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * brachium of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:474] - * brachium quadrigeminum superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:474[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72417 ] + * superior collicular brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72417 ] + * superior colliculus brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72417 ] + * superior quadrigeminal brachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72417 ] + * brachium colliculi cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:474, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brachium colliculi rostralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:474, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brachium colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachium_of_superior_colliculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * brachium of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:474 ] + * brachium quadrigeminum superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:474, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,8 +23,8 @@ * BM:MB-BSC * FMA:72417 * NIF_GrossAnatomy:birnlex_1065 - * NeuroNames:474 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1065] - * UMLS:C0175368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1065] + * NeuroNames:474 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1065 ] + * UMLS:C0175368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1065 ] * Wikipedia:Brachium_of_superior_colliculus * http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG * http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002680.md b/md/UBERON/80/UBERON_0002680.md index ce66af8b6d..3ed7dc8ffe 100644 --- a/md/UBERON/80/UBERON_0002680.md +++ b/md/UBERON/80/UBERON_0002680.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002680 * *Label* = regional part of metencephalon - * *Definition* = A regional part of brain that is part of a metencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a metencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * metencephalon subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67942] - * segment of metencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1361] + * metencephalon subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67942 ] + * segment of metencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1361 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metencephalon](../../UBERON/95/UBERON_0001895.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002780.md b/md/UBERON/80/UBERON_0002780.md index 5d34181da2..3dd9b7f53c 100644 --- a/md/UBERON/80/UBERON_0002780.md +++ b/md/UBERON/80/UBERON_0002780.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002780 * *Label* = regional part of forebrain - * *Definition* = A regional part of brain that is part of a forebrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a forebrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * forebrain segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61996] - * segment of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1677] + * forebrain segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61996 ] + * segment of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1677 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002880.md b/md/UBERON/80/UBERON_0002880.md index 549e2b7110..1610e0986d 100644 --- a/md/UBERON/80/UBERON_0002880.md +++ b/md/UBERON/80/UBERON_0002880.md @@ -6,19 +6,19 @@ ## Synonyms - * nucleus of circumolivary bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72608] - * pontobulbar body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72608] - * PnB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2656[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * corpus pontobulbare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:774[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus pontobulbaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:774[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus of circumolivary bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72608 ] + * pontobulbar body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72608 ] + * PnB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2656, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * corpus pontobulbare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:774, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus pontobulbaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:774, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:PnB * FMA:72608 * NIF_GrossAnatomy:birnlex_2656 - * NeuroNames:774 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2656] - * UMLS:C0175532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2656] + * NeuroNames:774 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2656 ] + * UMLS:C0175532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2656 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0002980.md b/md/UBERON/80/UBERON_0002980.md index e3962d8af7..2198b7bbd5 100644 --- a/md/UBERON/80/UBERON_0002980.md +++ b/md/UBERON/80/UBERON_0002980.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002980 * *Label* = opercular part of inferior frontal gyrus - * *Definition* = The part of the inferior frontal gyrus that lies between the inferior precentral sulcus and the ascending ramus of the lateral sulcus. It is called opercularis because it covers part of the insula. The pars opercularis together with the pars triangularis form Broca's area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Opercular_part_of_inferior_frontal_gyrus] + * *Definition* = The part of the inferior frontal gyrus that lies between the inferior precentral sulcus and the ascending ramus of the lateral sulcus. It is called opercularis because it covers part of the insula. The pars opercularis together with the pars triangularis form Broca's area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Opercular_part_of_inferior_frontal_gyrus ] ## Synonyms - * opercular portion of inferior frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61981] - * pars opercularis gyri frontalis inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_823] - * posterior part of inferior frontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61981] - * inferior frontal gyrus, opercular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IFGOp] + * opercular portion of inferior frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61981 ] + * pars opercularis gyri frontalis inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_823 ] + * posterior part of inferior frontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61981 ] + * inferior frontal gyrus, opercular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IFGOp ] ## Cross-references @@ -18,8 +18,8 @@ * BAMS:OpIFG * FMA:61981 * NIF_GrossAnatomy:birnlex_823 - * NeuroNames:87 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_823] - * UMLS:C0262296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_823] + * NeuroNames:87 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_823 ] + * UMLS:C0262296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_823 ] * Wikipedia:Opercular_part_of_inferior_frontal_gyrus ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003080.md b/md/UBERON/80/UBERON_0003080.md index 1395203249..519b514501 100644 --- a/md/UBERON/80/UBERON_0003080.md +++ b/md/UBERON/80/UBERON_0003080.md @@ -36,8 +36,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003180.md b/md/UBERON/80/UBERON_0003180.md index 68a756e1b5..17a89fce6a 100644 --- a/md/UBERON/80/UBERON_0003180.md +++ b/md/UBERON/80/UBERON_0003180.md @@ -7,7 +7,7 @@ ## Synonyms - * mesopleurite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004597] + * mesopleurite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004597 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004597 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000094 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003180 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_0003280.md b/md/UBERON/80/UBERON_0003280.md index 78e3e9c80c..b1b06acd7b 100644 --- a/md/UBERON/80/UBERON_0003280.md +++ b/md/UBERON/80/UBERON_0003280.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003280 * *Label* = endothelium of main bronchus - * *Definition* = An endothelium that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus principalis endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003380.md b/md/UBERON/80/UBERON_0003380.md index 3d86d6a436..318f226d67 100644 --- a/md/UBERON/80/UBERON_0003380.md +++ b/md/UBERON/80/UBERON_0003380.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003380 * *Label* = cardiac muscle of left atrium - * *Definition* = A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a left atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac left atrium cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac left atrium cardiac muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of cardiac left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of heart left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of left atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left atrium heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004154] - * left atrium myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001225] + * cardiac left atrium cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac left atrium cardiac muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of cardiac left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of heart left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of left atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left atrium heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004154 ] + * left atrium myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001225 ] * myocardium of left atrium - * textus muscularis of myocardium of cardiac left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of heart left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of left atrium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus muscularis of myocardium of left cardiac atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * textus muscularis of myocardium of cardiac left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of heart left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of left atrium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus muscularis of myocardium of left cardiac atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -39,7 +39,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left cardiac atrium](../../UBERON/79/UBERON_0002079.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003480.md b/md/UBERON/80/UBERON_0003480.md index 1c11449dc7..c9622f2e72 100644 --- a/md/UBERON/80/UBERON_0003480.md +++ b/md/UBERON/80/UBERON_0003480.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003480 * *Label* = vein of clitoris - * *Definition* = A vein that is part of a clitoris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a clitoris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * clitoris vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * clitoris vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [clitoris](../../UBERON/11/UBERON_0002411.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003580.md b/md/UBERON/80/UBERON_0003580.md index fec99ba093..89b5ff4e59 100644 --- a/md/UBERON/80/UBERON_0003580.md +++ b/md/UBERON/80/UBERON_0003580.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003580 * *Label* = lower respiratory tract connective tissue - * *Definition* = A portion of connective tissue that is part of a lower respiratory tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a lower respiratory tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower respiratory tract textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower respiratory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower respiratory tract textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower respiratory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lower respiratory tract](../../UBERON/58/UBERON_0001558.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003680.md b/md/UBERON/80/UBERON_0003680.md index c2bc1412c3..2476dbdb17 100644 --- a/md/UBERON/80/UBERON_0003680.md +++ b/md/UBERON/80/UBERON_0003680.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior cruciate ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44617] + * posterior cruciate ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44617 ] ## Cross-references @@ -14,7 +14,7 @@ * GAID:129 * MESH:A02.513.514.600 * SCTID:182445004 - * UMLS:C0080039 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Cruciate_Ligament] + * UMLS:C0080039 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Cruciate_Ligament ] * galen:PosteriorCruciateLigament * ncithesaurus:Posterior_Cruciate_Ligament @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0003980.md b/md/UBERON/80/UBERON_0003980.md index 3f48103820..0126cc440e 100644 --- a/md/UBERON/80/UBERON_0003980.md +++ b/md/UBERON/80/UBERON_0003980.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003980 * *Label* = cerebellum fissure - * *Definition* = One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009267] + * *Definition* = One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009267 ] ## Synonyms * cerebellar fissure - * fissurae cerebelli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77789[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebellar fissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CBf] - * cerebellar fissures set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77789] - * set of cerebellar fissures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77789] + * fissurae cerebelli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77789, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebellar fissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CBf ] + * cerebellar fissures set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77789 ] + * set of cerebellar fissures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77789 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) and [subarachnoid fissure](../../UBERON/66/UBERON_0014466.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_77789 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004080.md b/md/UBERON/80/UBERON_0004080.md index d4b7384491..abe621c398 100644 --- a/md/UBERON/80/UBERON_0004080.md +++ b/md/UBERON/80/UBERON_0004080.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004080 * *Label* = cerebellum vermis lobule VI - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009994] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009994 ] ## Synonyms - * declive (VI) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:DEC] + * declive (VI) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:DEC ] * declive of cerebellum * declive of vermis of cerebellum * lobule VI of cerebellum vermis - * neuraxis declive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83887] - * vermic lobule vi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081229] - * declive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001003] - * declive lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009994] + * neuraxis declive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83887 ] + * vermic lobule vi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081229 ] + * declive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001003 ] + * declive lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009994 ] ## Cross-references @@ -44,8 +44,9 @@ * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000909 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:Declive-MA_0001003 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004180.md b/md/UBERON/80/UBERON_0004180.md index ad13922c8f..f6f3b7984e 100644 --- a/md/UBERON/80/UBERON_0004180.md +++ b/md/UBERON/80/UBERON_0004180.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004180 * *Label* = mammary gland fat - * *Definition* = The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060611] + * *Definition* = The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060611 ] ## Synonyms - * adipose tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * adipose tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fat tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fatty tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fatty tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fatty tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fatty tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland fat tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland fatty tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast fat tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast fatty tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland fat tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland fatty tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland adipose tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland fat tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland fatty tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adipose tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * adipose tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fat tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fatty tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fatty tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fatty tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fatty tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland fat tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland fatty tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast fat tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast fatty tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland fat tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland fatty tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland adipose tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland fat tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland fatty tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004380.md b/md/UBERON/80/UBERON_0004380.md index 806cd275b1..be6ad0577b 100644 --- a/md/UBERON/80/UBERON_0004380.md +++ b/md/UBERON/80/UBERON_0004380.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004380 * *Label* = proximal epiphysis - * *Definition* = An epiphysis that adjacent_to a proximal metaphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that adjacent_to a proximal metaphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * proximal end of long bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32821] + * proximal end of long bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32821 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [proximal metaphysis](../../UBERON/78/UBERON_0004378.md) and [epiphysis](../../UBERON/37/UBERON_0001437.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004480.md b/md/UBERON/80/UBERON_0004480.md index 1bd1d1226f..2ca4c901d7 100644 --- a/md/UBERON/80/UBERON_0004480.md +++ b/md/UBERON/80/UBERON_0004480.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004480 * *Label* = musculature of limb - * *Definition* = Any collection of muscles that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * limb muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000995] - * limb musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50188] - * muscle group of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50188] - * set of muscles of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50188] + * limb muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000995 ] + * limb musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50188 ] + * muscle group of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50188 ] + * set of muscles of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50188 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005635 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004680.md b/md/UBERON/80/UBERON_0004680.md index 1fd4a100b7..fcb53dd98e 100644 --- a/md/UBERON/80/UBERON_0004680.md +++ b/md/UBERON/80/UBERON_0004680.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004680 * *Label* = body of fornix - * *Definition* = Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_739] + * *Definition* = Part of fornix adjacent to the crura where they join together at the midline underneath the corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_739 ] ## Synonyms - * body of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_739] - * body of fornix of forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61968] - * column of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61968] - * columna fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61968[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * columns of fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Columns_of_fornix] - * fornix body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61968] - * columna fornicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Columns_of_fornix[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * columns of the fornix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:fx] + * body of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_739 ] + * body of fornix of forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61968 ] + * column of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61968 ] + * columna fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61968, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * columns of fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Columns_of_fornix ] + * fornix body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61968 ] + * columna fornicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Columns_of_fornix, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * columns of the fornix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:fx ] ## Cross-references @@ -24,7 +24,7 @@ * NIF_GrossAnatomy:birnlex_739 * NeuroNames:271 * SCTID:369117006 - * UMLS:C0228289 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_739] + * UMLS:C0228289 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_739 ] * Wikipedia:Columns_of_fornix * http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted][Wikipedia:Columns_of_fornix]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004780.md b/md/UBERON/80/UBERON_0004780.md index 6938ba9edd..8173c6d540 100644 --- a/md/UBERON/80/UBERON_0004780.md +++ b/md/UBERON/80/UBERON_0004780.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004780 * *Label* = gastrointestinal system lamina propria - * *Definition* = A lamina propria that is part of a gastrointestinal system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a gastrointestinal system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0001899 - * UMLS:C1708197 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrointestinal_Tract_Lamina_Propria] + * UMLS:C1708197 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrointestinal_Tract_Lamina_Propria ] * ncithesaurus:Gastrointestinal_Tract_Lamina_Propria ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004880.md b/md/UBERON/80/UBERON_0004880.md index 6eb3d9bb6e..bfd9e4d651 100644 --- a/md/UBERON/80/UBERON_0004880.md +++ b/md/UBERON/80/UBERON_0004880.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004880 * *Label* = chordamesoderm - * *Definition* = The central region of trunk mesoderm. This tissue forms the notochord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The central region of trunk mesoderm. This tissue forms the notochord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = note that WP treats this as synonym of axial mesoderm. Induces neural tube. Gilbert: contains an anterior head process and the notochord. ## Synonyms - * axial chorda mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000091] + * axial chorda mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000091 ] * chorda mesoderm - * dorsal mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] - * presumptive notochord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000091] + * dorsal mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] + * presumptive notochord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000091 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Notochord rudiment[ZFIN:ZDB-PUB-961014-576]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0004980.md b/md/UBERON/80/UBERON_0004980.md index b81e0b820e..1632054138 100644 --- a/md/UBERON/80/UBERON_0004980.md +++ b/md/UBERON/80/UBERON_0004980.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004980 * *Label* = mucosa of ureter - * *Definition* = A mucosa that is part of a ureter [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a ureter [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosal layer of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15894] - * mucous membrane of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa (ureter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15894] - * tunica mucosa ureteris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15894[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ureter mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ureter mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ureter mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ureter organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ureteral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15894] - * ureteric mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15894] + * mucosa of organ of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosal layer of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15894 ] + * mucous membrane of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa (ureter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15894 ] + * tunica mucosa ureteris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15894, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ureter mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ureter mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ureter mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ureter organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ureteral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15894 ] + * ureteric mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15894 ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ureter](../../UBERON/56/UBERON_0000056.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005080.md b/md/UBERON/80/UBERON_0005080.md index f09c608a9f..cd1a53fa6d 100644 --- a/md/UBERON/80/UBERON_0005080.md +++ b/md/UBERON/80/UBERON_0005080.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005080 * *Label* = metanephric ureteric bud - * *Definition* = the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035502[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=36855&atid=440764] + * *Definition* = the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035502, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=36855&atid=440764 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [metanephros](../../UBERON/81/UBERON_0000081.md) and [ureteric bud](../../UBERON/84/UBERON_0000084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005180.md b/md/UBERON/80/UBERON_0005180.md index c53c77e152..99379b1177 100644 --- a/md/UBERON/80/UBERON_0005180.md +++ b/md/UBERON/80/UBERON_0005180.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = MA:0000747 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005180 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_0005280.md b/md/UBERON/80/UBERON_0005280.md index c4e92e3a41..174efa0fd3 100644 --- a/md/UBERON/80/UBERON_0005280.md +++ b/md/UBERON/80/UBERON_0005280.md @@ -26,9 +26,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0006904 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005280 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_0005380.md b/md/UBERON/80/UBERON_0005380.md index ffe0250be3..e3ba9c7ed1 100644 --- a/md/UBERON/80/UBERON_0005380.md +++ b/md/UBERON/80/UBERON_0005380.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005480.md b/md/UBERON/80/UBERON_0005480.md index c605c3189e..03107120ce 100644 --- a/md/UBERON/80/UBERON_0005480.md +++ b/md/UBERON/80/UBERON_0005480.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005480 * *Label* = superior orbital fissure - * *Definition* = The orbital fissure that is situated superiorly between the greater wing and the lesser wing of the sphenoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/orbital%20fissure] + * *Definition* = The orbital fissure that is situated superiorly between the greater wing and the lesser wing of the sphenoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/orbital%20fissure ] ## Synonyms - * fissura orbitalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_orbital_fissure[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fissura orbitalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_orbital_fissure] - * sphenoidal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_orbital_fissure] + * fissura orbitalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_orbital_fissure ] + * fissura orbitalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_orbital_fissure, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sphenoidal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_orbital_fissure ] * supraorbital fissure ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005580.md b/md/UBERON/80/UBERON_0005580.md index d89f44f9a0..56cd3861ff 100644 --- a/md/UBERON/80/UBERON_0005580.md +++ b/md/UBERON/80/UBERON_0005580.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005580 * *Label* = rhombomere 5 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000908] + * lateral wall rhombomere 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000908 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 5](../../UBERON/15/UBERON_0005515.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005680.md b/md/UBERON/80/UBERON_0005680.md index 21700f79f2..ad9d471bbd 100644 --- a/md/UBERON/80/UBERON_0005680.md +++ b/md/UBERON/80/UBERON_0005680.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005680 * *Label* = right lung accessory lobe segmental bronchus - * *Definition* = A segmental bronchus that is part of a right lung accessory lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A segmental bronchus that is part of a right lung accessory lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) and [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005880.md b/md/UBERON/80/UBERON_0005880.md index ff11e9cabc..0698e8ba76 100644 --- a/md/UBERON/80/UBERON_0005880.md +++ b/md/UBERON/80/UBERON_0005880.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005880 * *Label* = prepollex - * *Definition* = A rudimentary additional digit-like structure on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dictionary.com] + * *Definition* = A rudimentary additional digit-like structure on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dictionary.com ] * *Comment* = not homologous to digit 1 of tetrapods. Note we treat the prepollex as distinct from the digits, which are not part of the carpus ## Synonyms - * pseudothumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1098/rsbl.2009.1038] + * pseudothumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1098/rsbl.2009.1038 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0005980.md b/md/UBERON/80/UBERON_0005980.md index d0d352189c..30b00254c3 100644 --- a/md/UBERON/80/UBERON_0005980.md +++ b/md/UBERON/80/UBERON_0005980.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005980 * *Label* = pectinate muscle - * *Definition* = the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010496[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculi_pectinati] + * *Definition* = the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010496, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculi_pectinati ] ## Synonyms - * musculi pectinati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculi_pectinati[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * musculus pectinatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12226[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi pectinati atrii dextri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculi_pectinati[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi pectinati atrii sinistri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculi_pectinati[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi pectinati atrii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Musculi_pectinati[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculi pectinati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculi_pectinati, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * musculus pectinatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12226, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculi pectinati atrii dextri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculi_pectinati, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculi pectinati atrii sinistri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculi_pectinati, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculi pectinati atrii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Musculi_pectinati, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006080.md b/md/UBERON/80/UBERON_0006080.md index 0332517385..839e84877c 100644 --- a/md/UBERON/80/UBERON_0006080.md +++ b/md/UBERON/80/UBERON_0006080.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006280.md b/md/UBERON/80/UBERON_0006280.md index 05a3766d52..9bfda76bb2 100644 --- a/md/UBERON/80/UBERON_0006280.md +++ b/md/UBERON/80/UBERON_0006280.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006280 * *Label* = polar trophectoderm - * *Definition* = Trophectoderm that surrounds the inner cell mass (ICM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16341078] + * *Definition* = Trophectoderm that surrounds the inner cell mass (ICM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16341078 ] * *Comment* = unlike mural trophectoderm cells which stop proliferating and become large polyploid cells (the primary trophoblastic giant cells) by endoreduplication, polar trophectoderm cells remain diploid, continue to proliferate and give rise to both the ectoplacental cone and the extraembryonic ectoderm[MP] ## Synonyms - * polar trophoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000980] + * polar trophoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000980 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the trophectoderm overlying the inner cell mass. [See_Kaufman_MH_and_Bard_JBL, The_anatomical_basis_of_mouse_development_(1999)_San_Diego:_Academic_Press, p.10][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the trophoblast develops rapidly so that contact may be made with the maternal uterine tissues when conditions are appropriate. We have here an excellent example of an embryonic adaptation, the development of a structure never present in either adult or embryo of 'lower' vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006480.md b/md/UBERON/80/UBERON_0006480.md index 22f6aea31c..b3cfe00767 100644 --- a/md/UBERON/80/UBERON_0006480.md +++ b/md/UBERON/80/UBERON_0006480.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006480 * *Label* = Brodmann (1909) area 39 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_39] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_39 ] ## Synonyms - * B09-39 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1772] - * BA39 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 39 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1772] - * Brodmann area 39 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68636] - * Brodmann area 39, angular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1772] - * angular area 39 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68636] - * area 39 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68636] - * area 39 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1772] - * area angularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1772] - * B09-39 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1772[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-39 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1772 ] + * BA39 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 39 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1772 ] + * Brodmann area 39 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68636 ] + * Brodmann area 39, angular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1772 ] + * angular area 39 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68636 ] + * area 39 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68636 ] + * area 39 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1772 ] + * area angularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1772 ] + * B09-39 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1772, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -24,7 +24,7 @@ * NIF_GrossAnatomy:birnlex_1772 * NeuroNames:2409 * SCTID:384794002 - * UMLS:C1272500 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1772] + * UMLS:C1272500 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1772 ] * Wikipedia:Brodmann_area_39 ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006580.md b/md/UBERON/80/UBERON_0006580.md index 6445ad3353..ffb96d4e25 100644 --- a/md/UBERON/80/UBERON_0006580.md +++ b/md/UBERON/80/UBERON_0006580.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006580 * *Label* = mantle cavity - * *Definition* = Within the shell is a fleshy layer of tissue called the mantle; there is a cavity (the mantle cavity) between the mantle and the body wall proper. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000826] + * *Definition* = Within the shell is a fleshy layer of tissue called the mantle; there is a cavity (the mantle cavity) between the mantle and the body wall proper. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000826 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [mantle](../../UBERON/75/UBERON_0006575.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006680.md b/md/UBERON/80/UBERON_0006680.md index 0a52b888d3..403ddda467 100644 --- a/md/UBERON/80/UBERON_0006680.md +++ b/md/UBERON/80/UBERON_0006680.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006680 * *Label* = trachealis - * *Definition* = A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trachealis_muscle] + * *Definition* = A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trachealis_muscle ] ## Synonyms - * tracheal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7466] - * trachealis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7466] + * tracheal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7466 ] + * trachealis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7466 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0006780.md b/md/UBERON/80/UBERON_0006780.md index 8e2c9218d6..ed917b23b2 100644 --- a/md/UBERON/80/UBERON_0006780.md +++ b/md/UBERON/80/UBERON_0006780.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006780 * *Label* = zonal layer of superior colliculus - * *Definition* = a thin layer consisting of small myelinated axons together with marginal and horizontal cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] + * *Definition* = a thin layer consisting of small myelinated axons together with marginal and horizontal cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] ## Synonyms - * lamina I of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris i [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72406[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer I of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72406] - * stratum zonale of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72406] - * granular insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GI] - * superior colliculus zonal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCzo] - * zonal layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GI] - * zonal layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Zo] - * zonal layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:zo] + * lamina I of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris i [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72406, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer I of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72406 ] + * stratum zonale of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72406 ] + * granular insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GI ] + * superior colliculus zonal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCzo ] + * zonal layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GI ] + * zonal layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Zo ] + * zonal layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:zo ] ## Cross-references @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0007180.md b/md/UBERON/80/UBERON_0007180.md index 66359ae91b..aab3a8c7b5 100644 --- a/md/UBERON/80/UBERON_0007180.md +++ b/md/UBERON/80/UBERON_0007180.md @@ -6,8 +6,8 @@ ## Synonyms - * atretic follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18697] - * folliculus atreticus (Ovarium) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18697] + * atretic follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18697 ] + * folliculus atreticus (Ovarium) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18697 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0007280.md b/md/UBERON/80/UBERON_0007280.md index 352604f0db..3cb2e06ef9 100644 --- a/md/UBERON/80/UBERON_0007280.md +++ b/md/UBERON/80/UBERON_0007280.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007280 * *Label* = presumptive endocardium - * *Definition* = A presumptive structure that has_potential_to_develop_into a endocardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a endocardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [endocardium](../../UBERON/65/UBERON_0002165.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is part of the heart tube and will become the endocardium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0007380.md b/md/UBERON/80/UBERON_0007380.md index 17fc581f11..3afae14538 100644 --- a/md/UBERON/80/UBERON_0007380.md +++ b/md/UBERON/80/UBERON_0007380.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007380 * *Label* = dermal scale - * *Definition* = Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scale_(zoology)#Fish_scales] + * *Definition* = Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scale_(zoology)#Fish_scales ] ## Synonyms - * scales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000277[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * fish scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scale_(zoology)#Fish_scales] + * scales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000277, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * fish scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scale_(zoology)#Fish_scales ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0007780.md b/md/UBERON/80/UBERON_0007780.md index 7b59efcfd5..8426ab1e92 100644 --- a/md/UBERON/80/UBERON_0007780.md +++ b/md/UBERON/80/UBERON_0007780.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007780 * *Label* = exudate - * *Definition* = Exudates are fluids, cells, or other cellular substances that are slowly discharged from blood vessels usually from inflamed tissues. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.383] + * *Definition* = Exudates are fluids, cells, or other cellular substances that are slowly discharged from blood vessels usually from inflamed tissues. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.383 ] ## Synonyms - * transudates and exudate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1195] + * transudates and exudate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1195 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0008280.md b/md/UBERON/80/UBERON_0008280.md index 4ceabccec1..92fc67776c 100644 --- a/md/UBERON/80/UBERON_0008280.md +++ b/md/UBERON/80/UBERON_0008280.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008280 * *Label* = cnidarian venom - * *Definition* = Venoms from jellyfish, corals, SEA ANEMONES, etc. They contain hemo-, cardio-, dermo- , and neurotoxic substances and probably ENZYMES. They include palytoxin, sarcophine, and anthopleurine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] + * *Definition* = Venoms from jellyfish, corals, SEA ANEMONES, etc. They contain hemo-, cardio-, dermo- , and neurotoxic substances and probably ENZYMES. They include palytoxin, sarcophine, and anthopleurine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] ## Synonyms - * chironex venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] - * cnidarian venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] - * jellyfish venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] - * portuguese man of war venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] - * portuguese man-of-war venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] - * sea anemone venom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:D24.185.926.580.230] + * chironex venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] + * cnidarian venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] + * jellyfish venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] + * portuguese man of war venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] + * portuguese man-of-war venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] + * sea anemone venom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:D24.185.926.580.230 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0008780.md b/md/UBERON/80/UBERON_0008780.md index 6fb151a2d4..2f409c086e 100644 --- a/md/UBERON/80/UBERON_0008780.md +++ b/md/UBERON/80/UBERON_0008780.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008780 * *Label* = inner cell mass derived epiblast - * *Definition* = An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] + * *Definition* = An embryonic structure that is derived from the inner cell mass and lies above the hypoblast and gives rise to the three primary germ layers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] * *Comment* = The epiblast cells (appearing on day 8 of human embryonic development) make up a columnar epithelium with dense microvilli on the apical surface. During gastrulation, the epiblast cells undergo epithelial-to-mesenchymal transition and delaminate to become the loose mesenchyme of the primitive streak. The epiblast is present in postimplantation mouse embryos between E5.5-E7.5. ## Synonyms - * embryonic epiblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] + * embryonic epiblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] ## Cross-references @@ -16,7 +16,7 @@ * EHDAA:42 * EHDAA:75 * EMAPA:16050 - * UMLS:C1516906 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epiblast] + * UMLS:C1516906 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epiblast ] * ncithesaurus:Epiblast ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [inner cell mass](../../UBERON/87/UBERON_0000087.md) and [epiblast (generic)](../../UBERON/32/UBERON_0002532.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0008880.md b/md/UBERON/80/UBERON_0008880.md index d43856ac48..09af14c004 100644 --- a/md/UBERON/80/UBERON_0008880.md +++ b/md/UBERON/80/UBERON_0008880.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008880 * *Label* = annelid pygidium - * *Definition* = Rearmost segment of annelid worms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annelid#Segmentation] + * *Definition* = Rearmost segment of annelid worms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annelid#Segmentation ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009480.md b/md/UBERON/80/UBERON_0009480.md index 731cbcfaf3..5b023c8be5 100644 --- a/md/UBERON/80/UBERON_0009480.md +++ b/md/UBERON/80/UBERON_0009480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009480 * *Label* = endoderm of buccopharyngeal membrane - * *Definition* = An endoderm that is part of a buccopharyngeal membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endoderm that is part of a buccopharyngeal membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [buccopharyngeal membrane](../../UBERON/11/UBERON_0006211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009580.md b/md/UBERON/80/UBERON_0009580.md index a2a200da4c..dbb07d63c1 100644 --- a/md/UBERON/80/UBERON_0009580.md +++ b/md/UBERON/80/UBERON_0009580.md @@ -7,7 +7,7 @@ ## Synonyms * diencephalon lateral wall mantle layer - * mantle layer lateral wall diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000912] + * mantle layer lateral wall diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000912 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009680.md b/md/UBERON/80/UBERON_0009680.md index b4df5188c5..955ec26d41 100644 --- a/md/UBERON/80/UBERON_0009680.md +++ b/md/UBERON/80/UBERON_0009680.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009680 * *Label* = set of upper jaw teeth - * *Definition* = A tooth row that is part of a skeleton of upper jaw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tooth row that is part of a skeleton of upper jaw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arcus dentalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of all upper teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55634] - * upper dental arcade [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55634] - * upper jaw teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002129] - * maxillary dental arcade [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55634] + * arcus dentalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of all upper teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55634 ] + * upper dental arcade [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55634 ] + * upper jaw teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002129 ] + * maxillary dental arcade [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55634 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [skeleton of upper jaw](../../UBERON/77/UBERON_0003277.md) and [tooth row](../../UBERON/78/UBERON_0009678.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009780.md b/md/UBERON/80/UBERON_0009780.md index f1533b9a40..867bcf5894 100644 --- a/md/UBERON/80/UBERON_0009780.md +++ b/md/UBERON/80/UBERON_0009780.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009780 * *Label* = cardiac muscle tissue of left auricle - * *Definition* = A cardiac muscle tissue that is part of a left atrium auricular region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac muscle tissue that is part of a left atrium auricular region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle of left auricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16818] - * left atrium auricular region heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004168] + * cardiac muscle of left auricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16818 ] + * left atrium auricular region heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004168 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left atrium auricular region](../../UBERON/30/UBERON_0006630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009880.md b/md/UBERON/80/UBERON_0009880.md index ef0556b97f..17b3dbe8cd 100644 --- a/md/UBERON/80/UBERON_0009880.md +++ b/md/UBERON/80/UBERON_0009880.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009880 * *Label* = carpal skeleton - * *Definition* = Subdivision of skeleton that consists of the endochondral elements distal to the anterior limb/fin zeugopodial skeletal elements which constitute the proximal region of the anterior autopod skeleton[PHENOSCAPE:ad]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:ad] + * *Definition* = Subdivision of skeleton that consists of the endochondral elements distal to the anterior limb/fin zeugopodial skeletal elements which constitute the proximal region of the anterior autopod skeleton[PHENOSCAPE:ad]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:ad ] * *Comment* = Taxon notes: Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present[PHENOSCAPE:ad]. AO notes: we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent. Taxon notes: The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone[14] [Wikipedia:Carpus#Evolutionary_variations] ## Synonyms - * carpal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:25056[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71335] - * carpal bones set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71335] + * carpal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:25056, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71335 ] + * carpal bones set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71335 ] * fore mesopodial skeleton * fore mesopodium skeleton * ossa carpi * skeletal parts of fore mesopodium * skeleton of carpus - * carpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000040[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003207] - * fore mesopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000201] - * ossa carpi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carpus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * set of carpal bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71335] + * carpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000040, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003207 ] + * fore mesopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000201 ] + * ossa carpi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carpus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * set of carpal bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71335 ] ## Cross-references @@ -47,7 +47,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [carpal region](../../UBERON/52/UBERON_0004452.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Segment of the forearm corresponding to the carpus. It consists of several elements that articulate with the radius and ulna at one end and the metacarpals at the other end.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0009980.md b/md/UBERON/80/UBERON_0009980.md index d5ffe4a9e3..0c317fc988 100644 --- a/md/UBERON/80/UBERON_0009980.md +++ b/md/UBERON/80/UBERON_0009980.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009980 * *Label* = condyle of femur - * *Definition* = A condyle that is part of a distal epiphysis of femur. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A condyle that is part of a distal epiphysis of femur. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * condylus femoralis * condylus femoris * femoral condyle - * fibular condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000900] + * fibular condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000900 ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [condyle](../../UBERON/79/UBERON_0009979.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal epiphysis of femur](../../UBERON/06/UBERON_0004406.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Convex articular facet of the distal head of the femur that articulates with the proximal head of the fibula.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0010380.md b/md/UBERON/80/UBERON_0010380.md index e13e696774..3050212ea1 100644 --- a/md/UBERON/80/UBERON_0010380.md +++ b/md/UBERON/80/UBERON_0010380.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010380 * *Label* = enteric nerve - * *Definition* = A nerve that is part of a enteric nervous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a enteric nervous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [enteric nervous system](../../UBERON/05/UBERON_0002005.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0010580.md b/md/UBERON/80/UBERON_0010580.md index cb70f2fb2e..922ed212fb 100644 --- a/md/UBERON/80/UBERON_0010580.md +++ b/md/UBERON/80/UBERON_0010580.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010580 * *Label* = pedal digit 1 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 1 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 1 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 1 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1 mesenchyme](../../UBERON/62/UBERON_0010562.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0010680.md b/md/UBERON/80/UBERON_0010680.md index 18b1cf031b..6ccee3a921 100644 --- a/md/UBERON/80/UBERON_0010680.md +++ b/md/UBERON/80/UBERON_0010680.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010680 * *Label* = pedal digit 1 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit 1 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit 1 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 1 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 1 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 1 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1 mesenchyme](../../UBERON/62/UBERON_0010562.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0010880.md b/md/UBERON/80/UBERON_0010880.md index a2b558ba2e..247569c1b9 100644 --- a/md/UBERON/80/UBERON_0010880.md +++ b/md/UBERON/80/UBERON_0010880.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010880 * *Label* = gular fold - * *Definition* = A transverse fold of skin across the throat (Peters 1964). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gular_fold[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gular_skin[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://imnh.isu.edu/digitalatlas/bio/glsry.htm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764] + * *Definition* = A transverse fold of skin across the throat (Peters 1964). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gular_fold, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gular_skin, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://imnh.isu.edu/digitalatlas/bio/glsry.htm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764 ] ## Synonyms - * gular sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gular_fold] - * gular skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gular_fold] - * throat sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gular_fold] + * gular sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gular_fold ] + * gular skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gular_fold ] + * throat sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gular_fold ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9590 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010880 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0011280.md b/md/UBERON/80/UBERON_0011280.md index b02053f195..bc6873e2b8 100644 --- a/md/UBERON/80/UBERON_0011280.md +++ b/md/UBERON/80/UBERON_0011280.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011280 * *Label* = nail of pedal digit 3 - * *Definition* = A nail that is part of a pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 3 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18741] - * nail of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54350] - * nail plate of third toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54350] - * third toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54350] + * claw of digit 3 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18741 ] + * nail of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54350 ] + * nail plate of third toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54350 ] + * third toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54350 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0011380.md b/md/UBERON/80/UBERON_0011380.md index a64bbddfae..8b7517ab1c 100644 --- a/md/UBERON/80/UBERON_0011380.md +++ b/md/UBERON/80/UBERON_0011380.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011380 * *Label* = female external urethral sphincter - * *Definition* = The external sphincter muscle of female urethra is a muscle which controls urination. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra] + * *Definition* = The external sphincter muscle of female urethra is a muscle which controls urination. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra ] ## Synonyms * external urethral sphincter of female urethra - * musculus sphincter urethrae externus urethrae femininae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * outer muscle layer of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19778] - * rhabdosphincter of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19778] - * striated muscle layer of female urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19778] - * compressor urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * sphincter urethrovaginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * urethrovaginal sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_sphincter_muscle_of_female_urethra[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] + * musculus sphincter urethrae externus urethrae femininae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * outer muscle layer of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19778 ] + * rhabdosphincter of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19778 ] + * striated muscle layer of female urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19778 ] + * compressor urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * sphincter urethrovaginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * urethrovaginal sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_sphincter_muscle_of_female_urethra, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external urethral sphincter](../../UBERON/19/UBERON_0004919.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0011580.md b/md/UBERON/80/UBERON_0011580.md index 4254d063dc..afa26d3129 100644 --- a/md/UBERON/80/UBERON_0011580.md +++ b/md/UBERON/80/UBERON_0011580.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011580 * *Label* = platypus crural gland - * *Definition* = A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind lim [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Platypus_venom#Spur_and_crural_gland] + * *Definition* = A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind lim [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Platypus_venom#Spur_and_crural_gland ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011580 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0011980.md b/md/UBERON/80/UBERON_0011980.md index 43863cc617..c7a1ad26ee 100644 --- a/md/UBERON/80/UBERON_0011980.md +++ b/md/UBERON/80/UBERON_0011980.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011980 * *Label* = intratarsal joint - * *Definition* = an ankle joint that passes between the astragalus and calcaneum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint] + * *Definition* = an ankle joint that passes between the astragalus and calcaneum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryCr.html#Crurotarsal%20joint ] * *Comment* = line of flexion between calcaneus and astragalus ## Synonyms - * crurotarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * crurotarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011980 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0012080.md b/md/UBERON/80/UBERON_0012080.md index 1e99cb0fe4..57d866cef7 100644 --- a/md/UBERON/80/UBERON_0012080.md +++ b/md/UBERON/80/UBERON_0012080.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012080 * *Label* = patella cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a patella. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a patella. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note some sources have this as intramembranous ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [patella](../../UBERON/46/UBERON_0002446.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0012180.md b/md/UBERON/80/UBERON_0012180.md index ec986f51b3..6f88e98792 100644 --- a/md/UBERON/80/UBERON_0012180.md +++ b/md/UBERON/80/UBERON_0012180.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012180 * *Label* = head or neck skin - * *Definition* = A zone of skin that is part of a craniocervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a craniocervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0000574 - * UMLS:C1522650 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Scalp_and_Neck] + * UMLS:C1522650 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Scalp_and_Neck ] * ncithesaurus:Skin_of_the_Scalp_and_Neck ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0012480.md b/md/UBERON/80/UBERON_0012480.md index 753f8051ad..fcebbc9b5e 100644 --- a/md/UBERON/80/UBERON_0012480.md +++ b/md/UBERON/80/UBERON_0012480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012480 * *Label* = cloacal mucosa - * *Definition* = A mucosa that is part of a cloaca [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a cloaca [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003349 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0013180.md b/md/UBERON/80/UBERON_0013180.md index f09d63278b..798a143858 100644 --- a/md/UBERON/80/UBERON_0013180.md +++ b/md/UBERON/80/UBERON_0013180.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013180 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0013280.md b/md/UBERON/80/UBERON_0013280.md index 5aa991b4c9..0efee778de 100644 --- a/md/UBERON/80/UBERON_0013280.md +++ b/md/UBERON/80/UBERON_0013280.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013280 * *Label* = diaphysis of tibia - * *Definition* = A diaphysis that is part of a tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_tibia] + * *Definition* = A diaphysis that is part of a tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_tibia ] ## Synonyms - * body of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33125] - * corpus tibiae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * shaft of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33125] - * tibial diaphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33125] - * body of the tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_tibia] - * shaft of tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_tibia] + * body of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33125 ] + * corpus tibiae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * shaft of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33125 ] + * tibial diaphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33125 ] + * body of the tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_tibia ] + * shaft of tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_tibia ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [diaphysis](../../UBERON/69/UBERON_0004769.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The body of the tibia has three borders and three surfaces[Wikipedia:Body_of_tibia]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0013680.md b/md/UBERON/80/UBERON_0013680.md index e6afb7f983..df4f70223d 100644 --- a/md/UBERON/80/UBERON_0013680.md +++ b/md/UBERON/80/UBERON_0013680.md @@ -8,7 +8,7 @@ * left inner canthus * left medial canthus - * left medial palpebral commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59320] + * left medial palpebral commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59320 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [inner canthus](../../UBERON/11/UBERON_0005611.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left eye](../../UBERON/48/UBERON_0004548.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0014280.md b/md/UBERON/80/UBERON_0014280.md index 59878abf93..fda1a29bae 100644 --- a/md/UBERON/80/UBERON_0014280.md +++ b/md/UBERON/80/UBERON_0014280.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014280 * *Label* = piriform cortex layer 2 - * *Definition* = Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] + * *Definition* = Middle of three cytoarchitecturally defined layers of the piriform cortex characterized by a compact layer of cell bodies. It can be divided into a superficial part and a more densely packed deep part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] ## Synonyms - * layer 2 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * layer II of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * piriform cortex layer 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * piriform cortex layer II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * layer 2 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * layer II of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] - * piriform cortex layer II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091006] + * layer 2 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * layer II of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * piriform cortex layer 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * piriform cortex layer II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * layer 2 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * layer II of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] + * piriform cortex layer II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091006 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[contributor](../../or/contributor.md)* = Maryann Martone - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014280 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0014380.md b/md/UBERON/80/UBERON_0014380.md index 38048666f6..1d779b8673 100644 --- a/md/UBERON/80/UBERON_0014380.md +++ b/md/UBERON/80/UBERON_0014380.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014380 * *Label* = flexor digitorum brevis muscle - * *Definition* = The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_brevis_muscle] + * *Definition* = The flexor digitorum brevis lies in the middle of the sole of the foot, immediately above the central part of the plantar aponeurosis, with which it is firmly united. Its deep surface is separated from the lateral plantar vessels and nerves by a thin layer of fascia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_brevis_muscle ] ## Synonyms - * flexor digitorum brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37450] - * flexor digitorum brevis of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37450] - * musculus flexor digitorum brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * flexor digitorum brevis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_digitorum_brevis_muscle] + * flexor digitorum brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37450 ] + * flexor digitorum brevis of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37450 ] + * musculus flexor digitorum brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * flexor digitorum brevis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_digitorum_brevis_muscle ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014380 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0014480.md b/md/UBERON/80/UBERON_0014480.md index fef533987b..7d8d43b08c 100644 --- a/md/UBERON/80/UBERON_0014480.md +++ b/md/UBERON/80/UBERON_0014480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014480 * *Label* = blood feather - * *Definition* = A developing feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Pin_feather] + * *Definition* = A developing feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Pin_feather ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014480 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0014680.md b/md/UBERON/80/UBERON_0014680.md index e0484230a9..6c9ff399c4 100644 --- a/md/UBERON/80/UBERON_0014680.md +++ b/md/UBERON/80/UBERON_0014680.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal interphalangeal joint](../../UBERON/68/UBERON_0009768.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 5](../../UBERON/52/UBERON_0006052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014680 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0014780.md b/md/UBERON/80/UBERON_0014780.md index 3b2488b45b..76335c2468 100644 --- a/md/UBERON/80/UBERON_0014780.md +++ b/md/UBERON/80/UBERON_0014780.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014780 * *Label* = palatine aponeurosis - * *Definition* = Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_aponeurosis] + * *Definition* = Attached to the posterior border of the hard palate is a thin, firm fibrous lamella called the palatine aponeurosis, which supports the muscles and gives strength to the soft palate. It is thicker above than below, where it becomes very thin and difficult to define. Laterally it is continuous with the pharyngeal aponeurosis. It serves as the insertion for the Tensor veli palatini and Levator veli palatini, and the origin for the Musculus uvulae, Palatopharyngeus, and Palatoglossus. It provides support for the soft palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_aponeurosis ] ## Synonyms - * aponeurosis of tensor veli palatini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49429] - * aponeurosis palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_aponeurosis] + * aponeurosis of tensor veli palatini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49429 ] + * aponeurosis palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_aponeurosis ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aponeurosis](../../UBERON/14/UBERON_0006614.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014780 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_0015080.md b/md/UBERON/80/UBERON_0015080.md index 5ee4cd4bc0..1f2376c6d9 100644 --- a/md/UBERON/80/UBERON_0015080.md +++ b/md/UBERON/80/UBERON_0015080.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [proximal carpal endochondral element](../../UBERON/78/UBERON_0015078.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015080 + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2000280.md b/md/UBERON/80/UBERON_2000280.md index 0762735ed6..5a43bf2be5 100644 --- a/md/UBERON/80/UBERON_2000280.md +++ b/md/UBERON/80/UBERON_2000280.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2000480.md b/md/UBERON/80/UBERON_2000480.md index ecf51f090f..f905357191 100644 --- a/md/UBERON/80/UBERON_2000480.md +++ b/md/UBERON/80/UBERON_2000480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000480 * *Label* = caudal octavolateralis nucleus - * *Definition* = Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209] + * *Definition* = Hindbrain nucleus which is part of the medulla oblongata and is a mechanoreceptive area along with the medial octavolateralis nucleus. It is smaller than the medial octavolateralis nucleus and is located lateral to the facial and vagal lobes of the medulla oblongata. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209 ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2000580.md b/md/UBERON/80/UBERON_2000580.md index 74d3464e6c..7c66a71df1 100644 --- a/md/UBERON/80/UBERON_2000580.md +++ b/md/UBERON/80/UBERON_2000580.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2000880.md b/md/UBERON/80/UBERON_2000880.md index 1c0f7bf27d..f54c7237dd 100644 --- a/md/UBERON/80/UBERON_2000880.md +++ b/md/UBERON/80/UBERON_2000880.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000880[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000880, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_2000980.md b/md/UBERON/80/UBERON_2000980.md index 1bbb208d14..b8a16b9f64 100644 --- a/md/UBERON/80/UBERON_2000980.md +++ b/md/UBERON/80/UBERON_2000980.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000980 * *Label* = somite 25 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 25 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001280.md b/md/UBERON/80/UBERON_2001280.md index 6d04e95f5f..133272803b 100644 --- a/md/UBERON/80/UBERON_2001280.md +++ b/md/UBERON/80/UBERON_2001280.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001280 * *Label* = branchiostegal ray 3 - * *Definition* = Branchiostegal ray that is the third anterior-most ray in the adult. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Branchiostegal ray that is the third anterior-most ray in the adult. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001480.md b/md/UBERON/80/UBERON_2001480.md index faef80de3b..fadcddd987 100644 --- a/md/UBERON/80/UBERON_2001480.md +++ b/md/UBERON/80/UBERON_2001480.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001480 * *Label* = dorsal anterior lateral line nerve - * *Definition* = Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001680.md b/md/UBERON/80/UBERON_2001680.md index a679986c12..4c3ffe4021 100644 --- a/md/UBERON/80/UBERON_2001680.md +++ b/md/UBERON/80/UBERON_2001680.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001680 * *Label* = mesethmoid-vomer joint - * *Definition* = Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms - * mesethmoid-prevomer joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001680] + * mesethmoid-prevomer joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001680 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [mesethmoid bone](../../UBERON/38/UBERON_0011238.md) and [core#connects](../../ts/core#connects.md) some [vomer](../../UBERON/96/UBERON_0002396.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001780.md b/md/UBERON/80/UBERON_2001780.md index 0c83475415..a80b708edc 100644 --- a/md/UBERON/80/UBERON_2001780.md +++ b/md/UBERON/80/UBERON_2001780.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001880.md b/md/UBERON/80/UBERON_2001880.md index 792fb837ce..da731a2057 100644 --- a/md/UBERON/80/UBERON_2001880.md +++ b/md/UBERON/80/UBERON_2001880.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001880 * *Label* = rib of vertebra 3 - * *Definition* = Rib that articulates with the parapophysis of the third centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the third centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2001980.md b/md/UBERON/80/UBERON_2001980.md index bfa2abeacd..3be2503d74 100644 --- a/md/UBERON/80/UBERON_2001980.md +++ b/md/UBERON/80/UBERON_2001980.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001980 * *Label* = vertebral element 6 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 6 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2002080.md b/md/UBERON/80/UBERON_2002080.md index a3236ef5fe..00a295ce85 100644 --- a/md/UBERON/80/UBERON_2002080.md +++ b/md/UBERON/80/UBERON_2002080.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002080 * *Label* = spina occipitalis - * *Definition* = Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2002180.md b/md/UBERON/80/UBERON_2002180.md index 82f71e0432..b4902fc223 100644 --- a/md/UBERON/80/UBERON_2002180.md +++ b/md/UBERON/80/UBERON_2002180.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002180 * *Label* = obsolete central nucleus of ventral telencephalon - * *Definition* = Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * area ventralis telencephali, nucleus centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002180] + * area ventralis telencephali, nucleus centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002180 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_2002280.md b/md/UBERON/80/UBERON_2002280.md index 80b2885995..b8b39821de 100644 --- a/md/UBERON/80/UBERON_2002280.md +++ b/md/UBERON/80/UBERON_2002280.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002280 * *Label* = pectoral fin distal radial bone 3 - * *Definition* = pectoral fin distal radial 3 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 3 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin distal radial element 3](../../UBERON/80/UBERON_2102280.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2005080.md b/md/UBERON/80/UBERON_2005080.md index dfc176feae..320d6b3ffe 100644 --- a/md/UBERON/80/UBERON_2005080.md +++ b/md/UBERON/80/UBERON_2005080.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005080 * *Label* = anterior mesenteric artery - * *Definition* = Unpaired artery departing from dorsal aorta, typically supplying the small intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Unpaired artery departing from dorsal aorta, typically supplying the small intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * AMA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005080] - * rostral mesenteric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005080] + * AMA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005080 ] + * rostral mesenteric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005080 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2005180.md b/md/UBERON/80/UBERON_2005180.md index e5914fc7a2..3b17ffba17 100644 --- a/md/UBERON/80/UBERON_2005180.md +++ b/md/UBERON/80/UBERON_2005180.md @@ -7,7 +7,7 @@ ## Synonyms - * rostral primary motoneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005180] + * rostral primary motoneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005180 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/80/UBERON_2005380.md b/md/UBERON/80/UBERON_2005380.md index c46bfe373d..69a8ed7834 100644 --- a/md/UBERON/80/UBERON_2005380.md +++ b/md/UBERON/80/UBERON_2005380.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005380 * *Label* = dorsal fin proximal radial bone 3 - * *Definition* = dorsal fin proximal radial 3 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 3 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 3](../../UBERON/80/UBERON_2105380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2102280.md b/md/UBERON/80/UBERON_2102280.md index 4e3d536ea3..bd1e3ed882 100644 --- a/md/UBERON/80/UBERON_2102280.md +++ b/md/UBERON/80/UBERON_2102280.md @@ -25,7 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2105380.md b/md/UBERON/80/UBERON_2105380.md index 05f154af9a..798d2e7227 100644 --- a/md/UBERON/80/UBERON_2105380.md +++ b/md/UBERON/80/UBERON_2105380.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 3](../../UBERON/66/UBERON_2005366.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2202280.md b/md/UBERON/80/UBERON_2202280.md index bd2deac8ed..04f6493be5 100644 --- a/md/UBERON/80/UBERON_2202280.md +++ b/md/UBERON/80/UBERON_2202280.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2202280 * *Label* = pectoral fin distal radial cartilage 3 - * *Definition* = pectoral fin distal radial 3 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial 3 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin distal radial element 3](../../UBERON/80/UBERON_2102280.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_2205380.md b/md/UBERON/80/UBERON_2205380.md index f67dece258..df2f3e1485 100644 --- a/md/UBERON/80/UBERON_2205380.md +++ b/md/UBERON/80/UBERON_2205380.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205380 * *Label* = dorsal fin proximal radial cartilage 3 - * *Definition* = dorsal fin proximal radial 3 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 3 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 3](../../UBERON/80/UBERON_2105380.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000180.md b/md/UBERON/80/UBERON_3000180.md index 64e8d7d67c..426a19fd8a 100644 --- a/md/UBERON/80/UBERON_3000180.md +++ b/md/UBERON/80/UBERON_3000180.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000280.md b/md/UBERON/80/UBERON_3000280.md index 5d796a5a4a..df2e60972c 100644 --- a/md/UBERON/80/UBERON_3000280.md +++ b/md/UBERON/80/UBERON_3000280.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000280 * *Label* = margo mandibularis of pterygoid - * *Definition* = Ventrally directed margin that connects the anterior and posterior rami of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ventrally directed margin that connects the anterior and posterior rami of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000380.md b/md/UBERON/80/UBERON_3000380.md index 2b261a0b38..c79f276737 100644 --- a/md/UBERON/80/UBERON_3000380.md +++ b/md/UBERON/80/UBERON_3000380.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000580.md b/md/UBERON/80/UBERON_3000580.md index 342df540fe..993c837500 100644 --- a/md/UBERON/80/UBERON_3000580.md +++ b/md/UBERON/80/UBERON_3000580.md @@ -6,17 +6,17 @@ ## Synonyms - * columella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * columella auris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * interstapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * mediostapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * mesostapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * os columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * os intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * stapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * stelidium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] - * stilus columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000580] + * columella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * columella auris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * interstapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * mediostapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * mesostapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * os columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * os intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * stapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * stelidium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] + * stilus columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000580 ] ## Cross-references @@ -40,7 +40,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000680.md b/md/UBERON/80/UBERON_3000680.md index 25a1beb802..ab907980bf 100644 --- a/md/UBERON/80/UBERON_3000680.md +++ b/md/UBERON/80/UBERON_3000680.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000680 * *Label* = manubrium of hyale - * *Definition* = Proximal section of the hyale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Proximal section of the hyale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000680] + * processus anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000680 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000780.md b/md/UBERON/80/UBERON_3000780.md index d2d344ce26..cacd3da30a 100644 --- a/md/UBERON/80/UBERON_3000780.md +++ b/md/UBERON/80/UBERON_3000780.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000780 * *Label* = incisura coracoidea - * *Definition* = Notch that separates the cartilaginous regions of the procoracoid and coracoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Notch that separates the cartilaginous regions of the procoracoid and coracoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3000880.md b/md/UBERON/80/UBERON_3000880.md index fb9a790a14..8a81d5284d 100644 --- a/md/UBERON/80/UBERON_3000880.md +++ b/md/UBERON/80/UBERON_3000880.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000880 * *Label* = crista hypertrophica ischium - * *Definition* = Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3010080.md b/md/UBERON/80/UBERON_3010080.md index 105b786907..0dbb9ecb91 100644 --- a/md/UBERON/80/UBERON_3010080.md +++ b/md/UBERON/80/UBERON_3010080.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3010380.md b/md/UBERON/80/UBERON_3010380.md index 8c77d9868a..6d050e2beb 100644 --- a/md/UBERON/80/UBERON_3010380.md +++ b/md/UBERON/80/UBERON_3010380.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010380 * *Label* = outer fin tissue - * *Definition* = Part of the fin consisting of flattened epidermal cells elevated into a keel-like structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15188431] + * *Definition* = Part of the fin consisting of flattened epidermal cells elevated into a keel-like structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15188431 ] * *Comment* = In frogs (Anura) the outer fin tissue is present only in tadpoles and sometimes during the embryogenesis of species without tadpoles. In salamanders and caecilians tail fins can persist into reproductive maturity. ## Synonyms @@ -33,7 +33,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_3010780.md b/md/UBERON/80/UBERON_3010780.md index 65fcb26da9..df6c9fb7b6 100644 --- a/md/UBERON/80/UBERON_3010780.md +++ b/md/UBERON/80/UBERON_3010780.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_4000080.md b/md/UBERON/80/UBERON_4000080.md index 6c5e945779..0b79d47088 100644 --- a/md/UBERON/80/UBERON_4000080.md +++ b/md/UBERON/80/UBERON_4000080.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000080 * *Label* = keratin-based scale - * *Definition* = Fold or elevation of the epidermis rich in keratin proteins; possibly calcified but does not contain skeletal elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Fold or elevation of the epidermis rich in keratin proteins; possibly calcified but does not contain skeletal elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_4200080.md b/md/UBERON/80/UBERON_4200080.md index f36be892af..11180413fa 100644 --- a/md/UBERON/80/UBERON_4200080.md +++ b/md/UBERON/80/UBERON_4200080.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/80/UBERON_4200180.md b/md/UBERON/80/UBERON_4200180.md index 7c3dfcc767..4b0e4f51e9 100644 --- a/md/UBERON/80/UBERON_4200180.md +++ b/md/UBERON/80/UBERON_4200180.md @@ -26,7 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0000081.md b/md/UBERON/81/UBERON_0000081.md index f58b0d7c66..055f75fe0d 100644 --- a/md/UBERON/81/UBERON_0000081.md +++ b/md/UBERON/81/UBERON_0000081.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000081 * *Label* = metanephros - * *Definition* = In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0001656[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephros#Metanephros] + * *Definition* = In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0001656, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephros#Metanephros ] * *Comment* = TODO check developmental relationships ## Synonyms - * metanephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001543] - * definite kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001543] - * definitive kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001543] - * hind kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001543] - * metanephric kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000039] + * metanephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001543 ] + * definite kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001543 ] + * definitive kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001543 ] + * hind kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001543 ] + * metanephric kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000039 ] ## Cross-references @@ -24,7 +24,7 @@ * EMAPA:17373 * FMA:72172 * SCTID:308797000 - * UMLS:C0231049 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metanephros] + * UMLS:C0231049 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metanephros ] * VHOG:0000039 * Wikipedia:Metanephros#Metanephros * ncithesaurus:Metanephros @@ -54,8 +54,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = metanephric * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0000381.md b/md/UBERON/81/UBERON_0000381.md index ed474febc6..9263537c71 100644 --- a/md/UBERON/81/UBERON_0000381.md +++ b/md/UBERON/81/UBERON_0000381.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000381 * *Label* = urinary bladder detrusor smooth muscle - * *Definition* = bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011774[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Detrusor_urinae_muscle] + * *Definition* = bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011774, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Detrusor_urinae_muscle ] ## Synonyms - * detrusor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68018] - * detrusor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001453] - * detrusor muscle of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28637] + * detrusor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68018 ] + * detrusor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001453 ] + * detrusor muscle of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28637 ] * detrusor smooth muscle - * detrusor urinae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Detrusor_urinae_muscle] - * muscularis propria of the urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Detrusor_urinae_muscle] - * urinary bladder detrusor muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001698] - * urinary bladder detrussor smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001698] - * muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Detrusor_urinae_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Muscularis_Propria] - * musculus detrusor vesicae urinariae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Detrusor_urinae_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * detrusor urinae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Detrusor_urinae_muscle ] + * muscularis propria of the urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Detrusor_urinae_muscle ] + * urinary bladder detrusor muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001698 ] + * urinary bladder detrussor smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001698 ] + * muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Detrusor_urinae_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Muscularis_Propria ] + * musculus detrusor vesicae urinariae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Detrusor_urinae_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0000481.md b/md/UBERON/81/UBERON_0000481.md index 8cf826d63c..5f400c8ca4 100644 --- a/md/UBERON/81/UBERON_0000481.md +++ b/md/UBERON/81/UBERON_0000481.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000481 * *Label* = multi-tissue structure - * *Definition* = Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000055[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000055, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0000981.md b/md/UBERON/81/UBERON_0000981.md index e94f706ec1..397e71600c 100644 --- a/md/UBERON/81/UBERON_0000981.md +++ b/md/UBERON/81/UBERON_0000981.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000981 * *Label* = femur - * *Definition* = Endochondral longbone connecting the pelvic girdle with posterior zeugopodium skeleton.[VSAO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000186[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur] + * *Definition* = Endochondral longbone connecting the pelvic girdle with posterior zeugopodium skeleton.[VSAO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000186, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur ] * *Comment* = homologous to proximal metapterygial mesomere of pelvic appendage [Hall 2007]. ## Synonyms * thigh bone - * femoral bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001284] - * os femorale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001284[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001284[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os longissimum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * femoral bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001284 ] + * os femorale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001284, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001284, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os longissimum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A02.835.232.500.247 * OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA * SCTID:182046008 - * UMLS:C0015811 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Femur] + * UMLS:C0015811 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Femur ] * VHOG:0001159 * VSAO:0000186 * Wikipedia:Femur @@ -58,7 +58,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [femur endochondral element](../../UBERON/52/UBERON_0015052.md) ## Other Logical Axioms @@ -70,8 +70,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = femoral * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001081.md b/md/UBERON/81/UBERON_0001081.md index 53a287397d..3c0aa5755c 100644 --- a/md/UBERON/81/UBERON_0001081.md +++ b/md/UBERON/81/UBERON_0001081.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001081 * *Label* = endocardium of ventricle - * *Definition* = Endocardium that is part of the cardiac ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endocardium that is part of the cardiac ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cardiac ventricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endocardium of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac ventricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endocardium of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ventricle endocardium - * ventricle of heart endocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ventricle of heart endocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ventricular endocardium - * ventricle endocardial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000607] + * ventricle endocardial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000607 ] ## Cross-references @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endocardium](../../UBERON/65/UBERON_0002165.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001181.md b/md/UBERON/81/UBERON_0001181.md index e9c4478676..55abce9626 100644 --- a/md/UBERON/81/UBERON_0001181.md +++ b/md/UBERON/81/UBERON_0001181.md @@ -6,13 +6,13 @@ ## Synonyms - * inferior omental bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14709] - * inferior recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000825] - * inferior recess of omental bursa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14709] - * omental bursa inferior recess [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000446] - * recessus inferior bursae omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14709[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recessus inferior bursae omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * recessus inferior omentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14709] + * inferior omental bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14709 ] + * inferior recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000825 ] + * inferior recess of omental bursa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14709 ] + * omental bursa inferior recess [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000446 ] + * recessus inferior bursae omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14709, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recessus inferior bursae omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * recessus inferior omentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14709 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006249 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001281.md b/md/UBERON/81/UBERON_0001281.md index cf4bd73d36..8ae0d45401 100644 --- a/md/UBERON/81/UBERON_0001281.md +++ b/md/UBERON/81/UBERON_0001281.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001281 * *Label* = hepatic sinusoid - * *Definition* = Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_sinusoid[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_sinusoid, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * liver sinusoid - * liver sinusoidal blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sinusoid of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sinusoidal blood vessel of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * liver sinusoidal blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sinusoid of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sinusoidal blood vessel of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * vas capillare sinusoideum - * vas sinusoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_sinusoid[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vas sinusoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_sinusoid, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hepatic sinusoids ## Cross-references @@ -24,7 +24,7 @@ * MA:0000367 * SCTID:67435004 * TAO:0005091 - * UMLS:C0227523 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Sinusoid] + * UMLS:C0227523 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Sinusoid ] * VHOG:0000708 * Wikipedia:Hepatic_sinusoid * ZFA:0005091 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [sinusoid](../../UBERON/09/UBERON_0003909.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the amphibian liver has characteristics in common with both fish and terrestrial vertebrates. (...) The histological structure of the liver is similar to that in other vertebrates, with hepatocytes arranged in clusters and cords separated by a meshwork of sinusoids and the presence of the traditional triad of portal venule, hepatic arteriole, and bile duct.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003275 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001381.md b/md/UBERON/81/UBERON_0001381.md index d9d812705d..b2f2ee00a7 100644 --- a/md/UBERON/81/UBERON_0001381.md +++ b/md/UBERON/81/UBERON_0001381.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001381 * *Label* = semimembranosus muscle - * *Definition* = The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Semimembranosus] + * *Definition* = The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Semimembranosus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * musculus semimembranosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003177[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * semimembranosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002371] + * musculus semimembranosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003177, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * semimembranosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002371 ] ## Cross-references * BTO:0003177 * FMA:22438 * MA:0002371 - * UMLS:C0224452 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Semimembranosus] + * UMLS:C0224452 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Semimembranosus ] * Wikipedia:Semimembranosus * galen:Semimembranosus * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001481.md b/md/UBERON/81/UBERON_0001481.md index 1f34959b65..e62874d261 100644 --- a/md/UBERON/81/UBERON_0001481.md +++ b/md/UBERON/81/UBERON_0001481.md @@ -7,7 +7,7 @@ ## Synonyms - * distal carpal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000847] + * distal carpal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000847 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [distal carpal endochondral element](../../UBERON/68/UBERON_0015068.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Series of elements that articulate with the metacarpals.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001581.md b/md/UBERON/81/UBERON_0001581.md index 02a9f3c72f..e7b4579aec 100644 --- a/md/UBERON/81/UBERON_0001581.md +++ b/md/UBERON/81/UBERON_0001581.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001581 * *Label* = depressor labii inferioris - * *Definition* = The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_labii_inferioris_muscle] + * *Definition* = The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_labii_inferioris_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,7 +13,7 @@ * FMA:46816 * MA:0002287 - * UMLS:C0224119 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Depressor_Labii_Inferioris] + * UMLS:C0224119 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Depressor_Labii_Inferioris ] * Wikipedia:Depressor_labii_inferioris_muscle * http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001681.md b/md/UBERON/81/UBERON_0001681.md index 99749ef5fa..bc5f32706c 100644 --- a/md/UBERON/81/UBERON_0001681.md +++ b/md/UBERON/81/UBERON_0001681.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001681 * *Label* = nasal bone - * *Definition* = One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X) ## Synonyms - * adnasal@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000365] - * nasal@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000365] - * nasals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * os nasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasal_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * adnasal@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000365 ] + * nasal@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000365 ] + * nasals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * os nasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasal_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA * SCTID:181801008 * TAO:0000365 - * UMLS:C0027422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Bone] + * UMLS:C0027422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Bone ] * VHOG:0001370 * Wikipedia:Nasal_bone * ZFA:0000365 @@ -62,8 +62,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Synonym adnasal used in Weitzman 1960, and synonym discussed in Vari 1995.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001781.md b/md/UBERON/81/UBERON_0001781.md index b85308bb68..cb90d63643 100644 --- a/md/UBERON/81/UBERON_0001781.md +++ b/md/UBERON/81/UBERON_0001781.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001781 * *Label* = layer of retina - * *Definition* = any of the layers that make up the retina[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003727] + * *Definition* = any of the layers that make up the retina[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003727 ] * *Comment* = Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers ## Synonyms * retina layer - * retina neuronal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006069] + * retina neuronal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006069 ] * retinal layer - * retinal neuronal layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006069] + * retinal neuronal layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006069 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:58617 * MA:0001319 * SCTID:280657006 - * UMLS:C0459649 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retina_Layer] + * UMLS:C0459649 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retina_Layer ] * XAO:0000266 * ncithesaurus:Retina_Layer @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001781 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001881.md b/md/UBERON/81/UBERON_0001881.md index 5e6c0f456e..af7891be91 100644 --- a/md/UBERON/81/UBERON_0001881.md +++ b/md/UBERON/81/UBERON_0001881.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001881 * *Label* = island of calleja - * *Definition* = The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Islands_of_Calleja] + * *Definition* = The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Islands_of_Calleja ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * calleja island * islands of calleja - * insula callejae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Islands_of_Calleja[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * insulae olfactoriae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Islands_of_Calleja[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * islands of Calleja (olfactory tubercle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:276] + * insula callejae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Islands_of_Calleja, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * insulae olfactoriae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Islands_of_Calleja, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * islands of Calleja (olfactory tubercle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:276 ] ## Cross-references @@ -27,8 +27,8 @@ * MA:0000977 * MESH:A08.186.211.577.699.400 * NIF_GrossAnatomy:birnlex_1113 - * NeuroNames:276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1113] - * UMLS:C0262264 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1113] + * NeuroNames:276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1113 ] + * UMLS:C0262264 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1113 ] * Wikipedia:Islands_of_Calleja * http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Islands_of_Calleja_Rat.jpg/200px-Islands_of_Calleja_Rat.jpg @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0001981.md b/md/UBERON/81/UBERON_0001981.md index e68402163b..59dfbcaa7e 100644 --- a/md/UBERON/81/UBERON_0001981.md +++ b/md/UBERON/81/UBERON_0001981.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001981 * *Label* = blood vessel - * *Definition* = A vessel through which blood circulates in the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001102[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_vessel] + * *Definition* = A vessel through which blood circulates in the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001102, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_vessel ] * *Comment* = note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. ## Synonyms - * region of vascular tree organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50722] - * vascular tree organ region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50722] - * vas sanguineum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blood_vessel[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * region of vascular tree organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50722 ] + * vascular tree organ region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50722 ] + * vas sanguineum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blood_vessel, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,7 +32,7 @@ * OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA * SCTID:361097006 * TAO:0002137 - * UMLS:C0005847 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Blood_Vessel] + * UMLS:C0005847 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Blood_Vessel ] * VHOG:0001250 * Wikipedia:Blood_vessel * XAO:0001011 @@ -71,8 +71,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the vessels through which blood circulates in the body.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002081.md b/md/UBERON/81/UBERON_0002081.md index af20ed9dbe..4a5523ab54 100644 --- a/md/UBERON/81/UBERON_0002081.md +++ b/md/UBERON/81/UBERON_0002081.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002081 * *Label* = cardiac atrium - * *Definition* = Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Heart_atrium] + * *Definition* = Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Heart_atrium ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Cardiac atria [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * atria [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000471] + * Cardiac atria [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * atria [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000471 ] * atrium of heart - * cardiac atria [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cardiac atria [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * heart atrium - * atrial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000903] + * atrial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000903 ] ## Cross-references @@ -33,7 +33,7 @@ * MESH:A07.541.358 * SCTID:261405004 * TAO:0000471 - * UMLS:C0018792 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Atrium] + * UMLS:C0018792 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Atrium ] * VHOG:0000175 * Wikipedia:Heart_atrium * ZFA:0000471 @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002181.md b/md/UBERON/81/UBERON_0002181.md index a516e67e8f..6385e47845 100644 --- a/md/UBERON/81/UBERON_0002181.md +++ b/md/UBERON/81/UBERON_0002181.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002181 * *Label* = substantia gelatinosa - * *Definition* = Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.186.854.610.800[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando] + * *Definition* = Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.186.854.610.800, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando ] ## Synonyms * central gelatinous substance of spinal cord - * gelatinous substance of Rolando [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74019] + * gelatinous substance of Rolando [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74019 ] * gelatinous substance of dorsal horn of spinal cord * gelatinous substance of posterior horn of spinal cord - * substantia gelatinosa cornu posterioris medullae spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74019[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * substantia gelatinosa of spinal cord dorsal horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2674] - * substantia gelatinosa of spinal cord posterior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2674] - * supargenual nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SG] - * supragenual nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SG] + * substantia gelatinosa cornu posterioris medullae spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74019, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * substantia gelatinosa of spinal cord dorsal horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2674 ] + * substantia gelatinosa of spinal cord posterior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2674 ] + * supargenual nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SG ] + * supragenual nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SG ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A08.186.854.610.800 * NIF_GrossAnatomy:birnlex_2674 * NeuroNames:1635 - * UMLS:C0038588 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Substantia_Gelatinosa] + * UMLS:C0038588 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Substantia_Gelatinosa ] * Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando * ncithesaurus:Substantia_Gelatinosa @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002281.md b/md/UBERON/81/UBERON_0002281.md index 2f8ca23880..404db301be 100644 --- a/md/UBERON/81/UBERON_0002281.md +++ b/md/UBERON/81/UBERON_0002281.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002281 * *Label* = vestibular membrane of cochlear duct - * *Definition* = a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reissner's_membrane] + * *Definition* = a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reissner's_membrane ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Reissner membrane - * Reissner's membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77829] - * membrana vestibularis ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006021] - * paries vestibularis ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006021] - * superior wall of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77829] - * vestibular membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001200] - * vestibular membrane of Reissner [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77829] - * vestibular wall of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006021] - * vestibular membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006021] + * Reissner's membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77829 ] + * membrana vestibularis ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006021 ] + * paries vestibularis ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006021 ] + * superior wall of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77829 ] + * vestibular membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001200 ] + * vestibular membrane of Reissner [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77829 ] + * vestibular wall of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006021 ] + * vestibular membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006021 ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002381.md b/md/UBERON/81/UBERON_0002381.md index 888b127efe..3e0c687cd2 100644 --- a/md/UBERON/81/UBERON_0002381.md +++ b/md/UBERON/81/UBERON_0002381.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002381 * *Label* = pectoralis major - * *Definition* = The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoralis_major_muscle] + * *Definition* = The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoralis_major_muscle ] ## Synonyms * pectoralis major muscle * pectoralis major muscle structure - * Musculus pectoralis major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectoralis_major_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Musculus pectoralis major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectoralis_major_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:9627 * MA:0002354 * SCTID:181624003 - * UMLS:C0585574 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pectoralis_Major] + * UMLS:C0585574 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pectoralis_Major ] * VHOG:0000895 * Wikipedia:Pectoralis_major_muscle * http://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002481.md b/md/UBERON/81/UBERON_0002481.md index 39b2f8dd1b..61d814e420 100644 --- a/md/UBERON/81/UBERON_0002481.md +++ b/md/UBERON/81/UBERON_0002481.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002481 * *Label* = bone tissue - * *Definition* = Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000047[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000047, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms * calcium tissue * osseous tissue - * osteogenic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.232] + * osteogenic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.232 ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:224804 * MA:0002780 * MESH:A02.835.232 - * UMLS:C0391978 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bone_Tissue] + * UMLS:C0391978 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bone_Tissue ] * VSAO:0000047 * Wikipedia:Bone_tissue * ZFA:0005621 @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002581.md b/md/UBERON/81/UBERON_0002581.md index 7c39fa35bf..8a355eeb9e 100644 --- a/md/UBERON/81/UBERON_0002581.md +++ b/md/UBERON/81/UBERON_0002581.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002581 * *Label* = postcentral gyrus - * *Definition* = The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Postcentral_gyrus] + * *Definition* = The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Postcentral_gyrus ] ## Synonyms - * postcentral convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61896] - * posterior central gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61896] - * postrolandic gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61896] - * gyrus centralis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:105[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus postcentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:105[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * post central gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:105] + * postcentral convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61896 ] + * posterior central gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61896 ] + * postrolandic gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61896 ] + * gyrus centralis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:105, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus postcentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:105, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * post central gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:105 ] ## Cross-references @@ -21,10 +21,10 @@ * EFO:0001383 * FMA:61896 * NIF_GrossAnatomy:birnlex_1070 - * NeuroNames:105 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1070] + * NeuroNames:105 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1070 ] * SCTID:279167001 - * UMLS:C0152302 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1070] - * UMLS:C0152302 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Postcentral_Gyrus] + * UMLS:C0152302 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1070 ] + * UMLS:C0152302 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Postcentral_Gyrus ] * Wikipedia:Postcentral_gyrus * http://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Postcentral_gyrus.png/200px-Postcentral_gyrus.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002681.md b/md/UBERON/81/UBERON_0002681.md index 1fcc96e905..3e4e25bc11 100644 --- a/md/UBERON/81/UBERON_0002681.md +++ b/md/UBERON/81/UBERON_0002681.md @@ -6,18 +6,18 @@ ## Synonyms - * anteromedial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62142] - * anteromedial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * anteromedial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62142] - * nucleus anterior medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * nucleus anterior medialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * nucleus anterior thalami medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * nucleus anteromedialis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * nucleus anteromedialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * nucleus thalamicus anteromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * AM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1365[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus anteromedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1365] - * red nucleus, magnocellular division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AM] + * anteromedial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62142 ] + * anteromedial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * anteromedial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62142 ] + * nucleus anterior medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * nucleus anterior medialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * nucleus anterior thalami medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * nucleus anteromedialis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * nucleus anteromedialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * nucleus thalamicus anteromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * AM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1365, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus anteromedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1365 ] + * red nucleus, magnocellular division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AM ] ## Cross-references @@ -26,9 +26,9 @@ * BM:Die-AM * FMA:62142 * NIF_GrossAnatomy:birnlex_1365 - * NeuroNames:304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1365] + * NeuroNames:304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1365 ] * SCTID:279128007 - * UMLS:C0228319 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1365] + * UMLS:C0228319 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1365 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002781.md b/md/UBERON/81/UBERON_0002781.md index bdf7b67d24..8e8f2ed6fd 100644 --- a/md/UBERON/81/UBERON_0002781.md +++ b/md/UBERON/81/UBERON_0002781.md @@ -7,16 +7,16 @@ ## Synonyms * ventral posterior lateral nucleus (ilinsky) - * ventral posterolateral nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62206] - * ventral posterolateral thalamic nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62206] - * VPLC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1681[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * caudal part of the ventral posterolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346] - * nucleus ventralis caudalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis posterior lateralis, pars caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis posterior pars lateralis (Dewulf) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventralis posterolateralis (Walker) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ventrocaudalis externus (Van Buren) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:346[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral posterolateral thalamic nucleus, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VPLp] + * ventral posterolateral nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62206 ] + * ventral posterolateral thalamic nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62206 ] + * VPLC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1681, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * caudal part of the ventral posterolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346 ] + * nucleus ventralis caudalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis posterior lateralis, pars caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis posterior pars lateralis (Dewulf) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventralis posterolateralis (Walker) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ventrocaudalis externus (Van Buren) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:346, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral posterolateral thalamic nucleus, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VPLp ] ## Cross-references @@ -24,8 +24,8 @@ * BAMS:VPLp * FMA:62206 * NIF_GrossAnatomy:birnlex_1681 - * NeuroNames:346 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1681] - * UMLS:C0175287 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1681] + * NeuroNames:346 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1681 ] + * UMLS:C0175287 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1681 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002781 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002881.md b/md/UBERON/81/UBERON_0002881.md index b7d5378cd8..a781462d1f 100644 --- a/md/UBERON/81/UBERON_0002881.md +++ b/md/UBERON/81/UBERON_0002881.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002881 * *Label* = sublingual nucleus - * *Definition* = In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_nucleus] + * *Definition* = In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_nucleus ] ## Synonyms * Roller's nucleus - * nucleus of roller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68574] - * SLg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2657[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * inferior central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * nucleus Roller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:763[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of roller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_nucleus] - * nucleus parvocellularis nervi hypoglossi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:763[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nucleus of roller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68574 ] + * SLg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2657, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * inferior central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * nucleus Roller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:763, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of roller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_nucleus ] + * nucleus parvocellularis nervi hypoglossi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:763, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,9 +24,9 @@ * BAMS:SLg * FMA:68574 * NIF_GrossAnatomy:birnlex_2657 - * NeuroNames:763 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2657] + * NeuroNames:763 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2657 ] * SCTID:369076008 - * UMLS:C0228552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2657] + * UMLS:C0228552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2657 ] * Wikipedia:Sublingual_nucleus ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0002981.md b/md/UBERON/81/UBERON_0002981.md index 4fa253545b..1b0362eb95 100644 --- a/md/UBERON/81/UBERON_0002981.md +++ b/md/UBERON/81/UBERON_0002981.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002981 * *Label* = pulvinar nucleus - * *Definition* = The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulvinar_nuclei] + * *Definition* = The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulvinar_nuclei ] ## Synonyms - * nuclei pulvinares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62178[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pulvinar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62178] - * pulvinar nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62178] - * pulvinar thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_824] - * Pul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_824[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus pulvinaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:328[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus pulvinaris thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:328[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior nucleus (P) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:328] - * pulvinar thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:328] + * nuclei pulvinares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62178, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pulvinar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62178 ] + * pulvinar nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62178 ] + * pulvinar thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_824 ] + * Pul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_824, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus pulvinaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:328, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus pulvinaris thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:328, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior nucleus (P) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:328 ] + * pulvinar thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:328 ] ## Cross-references @@ -29,9 +29,9 @@ * GAID:662 * MESH:A08.186.211.730.385.826.701.485.600 * NIF_GrossAnatomy:birnlex_824 - * NeuroNames:328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_824] + * NeuroNames:328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_824 ] * SCTID:279157006 - * UMLS:C0152347 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_824] + * UMLS:C0152347 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_824 ] * Wikipedia:Pulvinar_nuclei * http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003081.md b/md/UBERON/81/UBERON_0003081.md index 5bf6d6d6e1..2638528426 100644 --- a/md/UBERON/81/UBERON_0003081.md +++ b/md/UBERON/81/UBERON_0003081.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003081 * *Label* = lateral plate mesoderm - * *Definition* = Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010117[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_plate_mesoderm] + * *Definition* = Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010117, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_plate_mesoderm ] * *Comment* = AO notes: subclass of mesoderm in ZFA. ## Synonyms - * lateral mesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0048368] + * lateral mesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0048368 ] * lateral plate - * lateral plate mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000919] - * mesoderma laminae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_plate_mesoderm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral plate mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000919 ] + * mesoderma laminae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_plate_mesoderm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * EMAPA:16179 * SCTID:361477005 * TAO:0000121 - * UMLS:C1517749 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Mesoderm] + * UMLS:C1517749 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Mesoderm ] * VHOG:0000118 * Wikipedia:Lateral_plate_mesoderm * XAO:0000311 @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A ventrolateral zone of amphioxus mesoderm grows down to surround the gut. Homology of this zone to the lateral plate mesoderm of vertebrates is supported by site of origin and fate.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006258 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003181.md b/md/UBERON/81/UBERON_0003181.md index 8fde28b1f0..f036b767aa 100644 --- a/md/UBERON/81/UBERON_0003181.md +++ b/md/UBERON/81/UBERON_0003181.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004601 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000920 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003181 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_0003281.md b/md/UBERON/81/UBERON_0003281.md index 26c01e8fae..7e26e24f14 100644 --- a/md/UBERON/81/UBERON_0003281.md +++ b/md/UBERON/81/UBERON_0003281.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003281 * *Label* = mesentery of stomach - * *Definition* = The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/mesogastrium] + * *Definition* = The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/mesogastrium ] * *Comment* = todo - check primitive vs developed ## Synonyms - * mesentery of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesogaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/mesogastrium] - * mesogastium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001617] - * mesogastrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] - * stomach mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Obol:obol] - * ventriculus mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesentery of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesogaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/mesogastrium ] + * mesogastium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001617 ] + * mesogastrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html ] + * stomach mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Obol:obol ] + * ventriculus mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003381.md b/md/UBERON/81/UBERON_0003381.md index c5db9f0794..9cd69aa264 100644 --- a/md/UBERON/81/UBERON_0003381.md +++ b/md/UBERON/81/UBERON_0003381.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003381 * *Label* = cardiac muscle of right ventricle - * *Definition* = A portion of cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a right ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle tissue of right ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83452] - * right ventricular cardiac muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003221] - * right ventricle cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001236] + * cardiac muscle tissue of right ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83452 ] + * right ventricular cardiac muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003221 ] + * right ventricle cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001236 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003481.md b/md/UBERON/81/UBERON_0003481.md index a6a99c11d8..a4760bda3b 100644 --- a/md/UBERON/81/UBERON_0003481.md +++ b/md/UBERON/81/UBERON_0003481.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003481 * *Label* = tail vein - * *Definition* = A vein that is part of a tail [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tail_vein] + * *Definition* = A vein that is part of a tail [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tail_vein ] * *Comment* = Editors note: see also caudal vein ## Synonyms - * post-vent region vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caudal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tail_vein] + * post-vent region vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caudal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tail_vein ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003581.md b/md/UBERON/81/UBERON_0003581.md index 7885f617b7..5915e64d13 100644 --- a/md/UBERON/81/UBERON_0003581.md +++ b/md/UBERON/81/UBERON_0003581.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003581 * *Label* = eyelid connective tissue - * *Definition* = A portion of connective tissue that is part of a eyelid [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a eyelid [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blepharon connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blepharon portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blepharon textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eyelid portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * eyelid textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of blepharon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of eyelid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blepharon connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blepharon portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blepharon textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eyelid portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * eyelid textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of blepharon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of eyelid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001251 - * UMLS:C1707989 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eyelid_Connective_Tissue] + * UMLS:C1707989 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eyelid_Connective_Tissue ] * ncithesaurus:Eyelid_Connective_Tissue ## Subsets @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [eyelid](../../UBERON/11/UBERON_0001711.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003681.md b/md/UBERON/81/UBERON_0003681.md index d1f6097c20..491164e473 100644 --- a/md/UBERON/81/UBERON_0003681.md +++ b/md/UBERON/81/UBERON_0003681.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003681 * *Label* = masticatory muscle - * *Definition* = In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.633.567.600[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_mastication] + * *Definition* = In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.633.567.600, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_mastication ] * *Comment* = Usage notes: we use this specifically for a jaw muscle that is innervates by the mandibular nerve. Development notes: Masticatory muscles (MM) originate from the somitomeres. These muscles develop late and are not complete even at birth. Tongue muscles develop before masticatory muscles and complete by birth [http://php.med.unsw.edu.au/embryology] ## Synonyms * muscle of mastication * jaw muscle - * musculi masticatorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_mastication[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculi masticatorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_mastication] + * musculi masticatorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_mastication ] + * musculi masticatorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_mastication, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:145 * MESH:A02.633.567.600 * SCTID:244769003 - * UMLS:C0024890 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_of_the_Mastication] + * UMLS:C0024890 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_of_the_Mastication ] * Wikipedia:Muscles_of_mastication * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png * ncithesaurus:Muscle_of_the_Mastication @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003881.md b/md/UBERON/81/UBERON_0003881.md index e4bc2c993b..8a49868f6a 100644 --- a/md/UBERON/81/UBERON_0003881.md +++ b/md/UBERON/81/UBERON_0003881.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003881 * *Label* = CA1 field of hippocampus - * *Definition* = A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1197] + * *Definition* = A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1197 ] ## Synonyms @@ -12,22 +12,22 @@ * CA1 field of Ammon's horn * CA1 field of cornu ammonis * CA1 field of hippocampus - * cornu ammonis 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1197] + * cornu ammonis 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1197 ] * hippocampus CA1 - * prosubiculum = distal ca1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1197] - * regio i cornus ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74042[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio i hippocampi proprii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74042[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1197] - * regio superior of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74042] + * prosubiculum = distal ca1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1197 ] + * regio i cornus ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74042, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio i hippocampi proprii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74042, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1197 ] + * regio superior of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74042 ] * region 1 of Ammon's horn - * region i of ammon's horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74042] - * region i of hippocampus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74042] - * CA1 field of the Ammon horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CA1] - * CA1 field of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:183[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * field CA1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:183] - * field CA1 of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:183] - * field CA1, Ammon's horn (Lorente de Ns) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:183] - * region CA1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:183] + * region i of ammon's horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74042 ] + * region i of hippocampus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74042 ] + * CA1 field of the Ammon horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CA1 ] + * CA1 field of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:183, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * field CA1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:183 ] + * field CA1 of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:183 ] + * field CA1, Ammon's horn (Lorente de Ns) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:183 ] + * region CA1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:183 ] ## Cross-references @@ -38,9 +38,9 @@ * FMA:74042 * MA:0000950 * NIF_GrossAnatomy:birnlex_1197 - * NeuroNames:183 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1197] - * UMLS:C0694598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1197] - * UMLS:C0694598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:CA1_Field_of_the_Cornu_Ammonis] + * NeuroNames:183 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1197 ] + * UMLS:C0694598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1197 ] + * UMLS:C0694598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:CA1_Field_of_the_Cornu_Ammonis ] * ncithesaurus:CA1_Field_of_the_Cornu_Ammonis ## Subsets @@ -59,8 +59,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0003981.md b/md/UBERON/81/UBERON_0003981.md index 41f01e976d..6e5632ff22 100644 --- a/md/UBERON/81/UBERON_0003981.md +++ b/md/UBERON/81/UBERON_0003981.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003981 * *Label* = primordial ovarian follicle - * *Definition* = primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009361] + * *Definition* = primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009361 ] ## Synonyms - * ovary primordial follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001710] + * ovary primordial follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001710 ] * primordial follicle ## Cross-references * EMAPA:30755 * MA:0001710 - * UMLS:C1514441 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordial_Follicle] + * UMLS:C1514441 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordial_Follicle ] * ncithesaurus:Primordial_Follicle ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004081.md b/md/UBERON/81/UBERON_0004081.md index a484859e22..3d64afeea2 100644 --- a/md/UBERON/81/UBERON_0004081.md +++ b/md/UBERON/81/UBERON_0004081.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004081 * *Label* = cerebellum vermis lobule VII - * *Definition* = The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009995[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Folium_(vermis)] + * *Definition* = The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009995, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Folium_(vermis) ] * *Comment* = check MA, MP, FMA, folium? ## Synonyms * folium of cerebellum * folium of vermis of cerebellum - * folium-tuber vermis (VII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:FOTU] + * folium-tuber vermis (VII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:FOTU ] * lobule VII of cerebellum vermis - * neuraxis folium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83889] - * vermic lobule VII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081230] - * folium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001004] - * folium lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009995] + * neuraxis folium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83889 ] + * vermic lobule VII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081230 ] + * folium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001004 ] + * folium lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009995 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004381.md b/md/UBERON/81/UBERON_0004381.md index c55cf2c57e..d0c64a4102 100644 --- a/md/UBERON/81/UBERON_0004381.md +++ b/md/UBERON/81/UBERON_0004381.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004381 * *Label* = skeleton of limb - * *Definition* = The collection of all skeletal elements in an individual limb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in an individual limb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that EHDAA2 considers hip and shoulder joints part of limb skeleton. ## Synonyms - * free limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000300] - * limb skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002221] + * free limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000300 ] + * limb skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002221 ] * set of bones of limb ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal subdivision that is part of the limb.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004481.md b/md/UBERON/81/UBERON_0004481.md index 779c48b744..ba095bd8ee 100644 --- a/md/UBERON/81/UBERON_0004481.md +++ b/md/UBERON/81/UBERON_0004481.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004481 * *Label* = musculature of upper limb - * *Definition* = Any collection of muscles that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * free upper limb musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50396] - * muscle group of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50396] - * musculature of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50396] - * set of muscles of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50396] + * free upper limb musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50396 ] + * muscle group of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50396 ] + * musculature of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50396 ] + * set of muscles of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50396 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004581.md b/md/UBERON/81/UBERON_0004581.md index 62b6653e6d..4b797aafac 100644 --- a/md/UBERON/81/UBERON_0004581.md +++ b/md/UBERON/81/UBERON_0004581.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004581 * *Label* = systemic venous system - * *Definition* = The part of the venous system that drains the general body tissues[Kardong] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Systemic_venous_system] + * *Definition* = The part of the venous system that drains the general body tissues[Kardong] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Systemic_venous_system ] ## Synonyms - * systemic venous circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45626] + * systemic venous circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45626 ] ## Cross-references @@ -33,8 +33,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004681.md b/md/UBERON/81/UBERON_0004681.md index 1a3d676ca8..00d718f682 100644 --- a/md/UBERON/81/UBERON_0004681.md +++ b/md/UBERON/81/UBERON_0004681.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004681 * *Label* = vestibular system - * *Definition* = The sensory system for the sense of balance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090819] + * *Definition* = The sensory system for the sense of balance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090819 ] * *Comment* = note that FMA and NIF have no part information for this class. This is a GAT in FMA ## Synonyms - * vestibular organ system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7193] - * vestibular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090819] + * vestibular organ system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7193 ] + * vestibular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090819 ] * equilibrioception system * vestibulomotor system @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable_of](../../RO/15/RO_0002215.md) some [equilibrioception](../../GO/57/GO_0050957.md) and [sensory system](../../UBERON/32/UBERON_0001032.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright[Wikipedia:Vestibular_system]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0004781.md b/md/UBERON/81/UBERON_0004781.md index 7afa577d22..849f4df5ef 100644 --- a/md/UBERON/81/UBERON_0004781.md +++ b/md/UBERON/81/UBERON_0004781.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004781 * *Label* = gall bladder lamina propria - * *Definition* = A lamina propria that is part of a gallbladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a gallbladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gall bladder lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder lamina propria mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria mucosa of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina propria of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001633] + * gall bladder lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder lamina propria mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria mucosa of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina propria of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001633 ] ## Cross-references * MA:0001633 - * UMLS:C1708175 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gallbladder_Lamina_Propria] + * UMLS:C1708175 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gallbladder_Lamina_Propria ] * ncithesaurus:Gallbladder_Lamina_Propria ## Subsets @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gallbladder](../../UBERON/10/UBERON_0002110.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004781 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005081.md b/md/UBERON/81/UBERON_0005081.md index 32f455af3b..9dc162d8f0 100644 --- a/md/UBERON/81/UBERON_0005081.md +++ b/md/UBERON/81/UBERON_0005081.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005081 * *Label* = ureter ureteric bud - * *Definition* = The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035503] + * *Definition* = The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035503 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [ureter](../../UBERON/56/UBERON_0000056.md) and [ureteric bud](../../UBERON/84/UBERON_0000084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005181.md b/md/UBERON/81/UBERON_0005181.md index 0d963b6490..9eddefb423 100644 --- a/md/UBERON/81/UBERON_0005181.md +++ b/md/UBERON/81/UBERON_0005181.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005181 * *Label* = thoracic segment organ - * *Definition* = An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An organ that part of the thoracic segment region. This region can be further subdividied chest and thoracic cavity regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * upper body organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000563] + * upper body organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000563 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005281.md b/md/UBERON/81/UBERON_0005281.md index ca0c5f7acd..97f74c3712 100644 --- a/md/UBERON/81/UBERON_0005281.md +++ b/md/UBERON/81/UBERON_0005281.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005281 * *Label* = ventricular system of central nervous system - * *Definition* = a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricular_system] + * *Definition* = a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricular_system ] * *Comment* = todo - resolve space vs structure conflation. We follow FMA in making this and the various ventricles a structure - it follows from this that strutures such as the tela choroidea and choroid plexuses can be part of the ventricles and ventricular system. Note: see also the class 'neuraxis cavity' ## Synonyms - * CNS ventricular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004362] - * ventricular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001261] - * ventricular system of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242675] - * ventral septal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VS] - * ventricle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricular_system] - * ventriculi cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventricular_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * CNS ventricular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004362 ] + * ventricular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001261 ] + * ventricular system of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242675 ] + * ventral septal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VS ] + * ventricle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricular_system ] + * ventriculi cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventricular_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005381.md b/md/UBERON/81/UBERON_0005381.md index c7404745c0..4492e116da 100644 --- a/md/UBERON/81/UBERON_0005381.md +++ b/md/UBERON/81/UBERON_0005381.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005381 * *Label* = dentate gyrus granule cell layer - * *Definition* = Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4129] + * *Definition* = Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4129 ] ## Synonyms - * DG granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4129] - * granular layer of dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83146] - * Dentate gyrus, granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DG-sg] - * granular layer of the dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GrDG] + * DG granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4129 ] + * granular layer of dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83146 ] + * Dentate gyrus, granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DG-sg ] + * granular layer of the dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GrDG ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005481.md b/md/UBERON/81/UBERON_0005481.md index 908c275daf..f28184e01c 100644 --- a/md/UBERON/81/UBERON_0005481.md +++ b/md/UBERON/81/UBERON_0005481.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005481 * *Label* = tentorial sinus - * *Definition* = The straight sinus (also known by the alternate anatomical term tentorial sinus), within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head towards the back. It drains from the inferior sagittal sinus (from the center of the brain) to the transverse sinuses (at the back of the head), then to the sigmoid sinuses below the brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_sinus] + * *Definition* = The straight sinus (also known by the alternate anatomical term tentorial sinus), within the human head, is an area beneath the brain, which allows blood veins to span the area, from the center of the head towards the back. It drains from the inferior sagittal sinus (from the center of the brain) to the transverse sinuses (at the back of the head), then to the sigmoid sinuses below the brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_sinus ] * *Comment* = retired in ncit ## Synonyms - * rectus sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_sinus] - * sinus rectus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_sinus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * straight sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_sinus] - * straight sinus vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_sinus] + * rectus sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_sinus ] + * sinus rectus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_sinus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * straight sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_sinus ] + * straight sinus vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_sinus ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005581.md b/md/UBERON/81/UBERON_0005581.md index 462d922c56..acb3bf76b4 100644 --- a/md/UBERON/81/UBERON_0005581.md +++ b/md/UBERON/81/UBERON_0005581.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005581 * *Label* = rhombomere 5 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000828] + * roof plate rhombomere 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000828 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 5](../../UBERON/15/UBERON_0005515.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005681.md b/md/UBERON/81/UBERON_0005681.md index 22adf4313e..ac33457943 100644 --- a/md/UBERON/81/UBERON_0005681.md +++ b/md/UBERON/81/UBERON_0005681.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005681 * *Label* = right lung upper lobe bronchiole - * *Definition* = A bronchiole that is part of a upper lobe of right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a upper lobe of right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * bronchiole of right upper lobe * bronchiole of right upper lobe of lung - * right lung cranial lobe bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001749] + * right lung cranial lobe bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001749 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005881.md b/md/UBERON/81/UBERON_0005881.md index 5780928a9c..00163dbe7a 100644 --- a/md/UBERON/81/UBERON_0005881.md +++ b/md/UBERON/81/UBERON_0005881.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0005981.md b/md/UBERON/81/UBERON_0005981.md index 90ee1f9fac..ee9b402393 100644 --- a/md/UBERON/81/UBERON_0005981.md +++ b/md/UBERON/81/UBERON_0005981.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005981 * *Label* = vena cava sinus - * *Definition* = the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010497] + * *Definition* = the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010497 ] ## Synonyms - * cavity of inflow part of right atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13246] - * posterior right atrial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13246] - * sinus venarum cavarum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13246] + * cavity of inflow part of right atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13246 ] + * posterior right atrial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13246 ] + * sinus venarum cavarum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13246 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0006081.md b/md/UBERON/81/UBERON_0006081.md index 99411e6c82..47784f5981 100644 --- a/md/UBERON/81/UBERON_0006081.md +++ b/md/UBERON/81/UBERON_0006081.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006081 * *Label* = fundus of gallbladder - * *Definition* = The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_of_gallbladder] + * *Definition* = The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_of_gallbladder ] ## Synonyms - * gallbladder fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14536] - * fundus of the gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_of_gallbladder] - * fundus vesicae biliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_of_gallbladder[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gallbladder fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_of_gallbladder] + * gallbladder fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14536 ] + * fundus of the gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_of_gallbladder ] + * fundus vesicae biliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_of_gallbladder, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gallbladder fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_of_gallbladder ] ## Cross-references * FMA:14536 * SCTID:245391004 - * UMLS:C0227544 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gallbladder_Fundus] + * UMLS:C0227544 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gallbladder_Fundus ] * Wikipedia:Fundus_of_gallbladder * http://upload.wikimedia.org/wikipedia/commons/4/44/Gray1095_parts.png * ncithesaurus:Gallbladder_Fundus @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0006281.md b/md/UBERON/81/UBERON_0006281.md index e314c295ad..c18e4f7d4b 100644 --- a/md/UBERON/81/UBERON_0006281.md +++ b/md/UBERON/81/UBERON_0006281.md @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EHDAA:8701 * *[consider](../../er/oboInOwl#consider.md)* = EMAPA:18422 * *[consider](../../er/oboInOwl#consider.md)* = FMA:71904 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006281 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_0006481.md b/md/UBERON/81/UBERON_0006481.md index 8f49c3deda..4bf6e9c79d 100644 --- a/md/UBERON/81/UBERON_0006481.md +++ b/md/UBERON/81/UBERON_0006481.md @@ -6,16 +6,16 @@ ## Synonyms - * B09-44 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1776] - * BA44 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 44 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1776] - * Brodmann area 44 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68641] - * Brodmann area 44, opercular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1776] - * area 44 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68641] - * area 44 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1776] - * area opercularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1776] - * opercular area 44 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68641] - * B09-44 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1776[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-44 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1776 ] + * BA44 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 44 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1776 ] + * Brodmann area 44 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68641 ] + * Brodmann area 44, opercular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1776 ] + * area 44 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68641 ] + * area 44 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1776 ] + * area opercularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1776 ] + * opercular area 44 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68641 ] + * B09-44 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1776, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -23,7 +23,7 @@ * NIF_GrossAnatomy:birnlex_1776 * NeuroNames:2402 * SCTID:384803008 - * UMLS:C1272509 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1776] + * UMLS:C1272509 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1776 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0006581.md b/md/UBERON/81/UBERON_0006581.md index 3db7e4dc55..415047c78b 100644 --- a/md/UBERON/81/UBERON_0006581.md +++ b/md/UBERON/81/UBERON_0006581.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006581 * *Label* = mantle muscle - * *Definition* = A muscle organ that is part of a mantle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a mantle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mantle](../../UBERON/75/UBERON_0006575.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0006681.md b/md/UBERON/81/UBERON_0006681.md index 820e1901bc..9856dffb43 100644 --- a/md/UBERON/81/UBERON_0006681.md +++ b/md/UBERON/81/UBERON_0006681.md @@ -6,8 +6,8 @@ ## Synonyms - * Interthalamic connection [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74869] - * Middle commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74869] + * Interthalamic connection [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74869 ] + * Middle commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74869 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0007181.md b/md/UBERON/81/UBERON_0007181.md index 368013e63a..08fd6aec22 100644 --- a/md/UBERON/81/UBERON_0007181.md +++ b/md/UBERON/81/UBERON_0007181.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007181 * *Label* = serosa of infundibulum of uterine tube - * *Definition* = A serous membrane that is part of a uterine tube infundibulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a uterine tube infundibulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * serosa of infundibulum of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18324] - * serosa of infundibulum of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18324] + * serosa of infundibulum of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18324 ] + * serosa of infundibulum of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18324 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [uterine tube infundibulum](../../UBERON/84/UBERON_0003984.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0007281.md b/md/UBERON/81/UBERON_0007281.md index 1aedb24a2d..771b872dd8 100644 --- a/md/UBERON/81/UBERON_0007281.md +++ b/md/UBERON/81/UBERON_0007281.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007281 * *Label* = presumptive midbrain hindbrain boundary - * *Definition* = An embryonic midbrain hindbrain boundary that is part of a neurectoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An embryonic midbrain hindbrain boundary that is part of a neurectoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * presumptive MHB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * presumptive MHB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [embryonic midbrain hindbrain boundary](../../UBERON/74/UBERON_0009774.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neurectoderm](../../UBERON/46/UBERON_0002346.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0007381.md b/md/UBERON/81/UBERON_0007381.md index 5ae7c63d45..6a86eb5aa3 100644 --- a/md/UBERON/81/UBERON_0007381.md +++ b/md/UBERON/81/UBERON_0007381.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007381 * *Label* = epidermal scale - * *Definition* = A fold in the surface epidermis composed of keratin[Kardong]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reptile_scale] + * *Definition* = A fold in the surface epidermis composed of keratin[Kardong]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reptile_scale ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0007681.md b/md/UBERON/81/UBERON_0007681.md index 2ed77d388e..e5a3a6a0a5 100644 --- a/md/UBERON/81/UBERON_0007681.md +++ b/md/UBERON/81/UBERON_0007681.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007681 * *Label* = facial neural crest - * *Definition* = Cranial neural crest that is part of the facial region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000875] + * *Definition* = Cranial neural crest that is part of the facial region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000875 ] ## Synonyms @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0008281.md b/md/UBERON/81/UBERON_0008281.md index e635c6bb1d..ffa6803954 100644 --- a/md/UBERON/81/UBERON_0008281.md +++ b/md/UBERON/81/UBERON_0008281.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008281 * *Label* = tooth bud - * *Definition* = A knoblike tooth primordium developing into an enamel organ surrounded by a dental sac and encasing the odontogenic papilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001838] + * *Definition* = A knoblike tooth primordium developing into an enamel organ surrounded by a dental sac and encasing the odontogenic papilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001838 ] ## Synonyms - * tooth germ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tooth_development] + * tooth germ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tooth_development ] ## Cross-references * BTO:0001838 * MESH:A14.254.900.720 * SCTID:53301001 - * UMLS:C0040442 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tooth_Bud] + * UMLS:C0040442 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tooth_Bud ] * ncithesaurus:Tooth_Bud ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0008781.md b/md/UBERON/81/UBERON_0008781.md index 3224714495..8fa681a459 100644 --- a/md/UBERON/81/UBERON_0008781.md +++ b/md/UBERON/81/UBERON_0008781.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008781 * *Label* = blastodisc derived epiblast - * *Definition* = An epiblast (generic) that develops_from a blastodisc. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiblast (generic) that develops_from a blastodisc. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc ## Synonyms @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [blastodisc](../../UBERON/49/UBERON_0004749.md) and [epiblast (generic)](../../UBERON/32/UBERON_0002532.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: develops_from embryonic structure (UBERON:0002050)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: part_of embryonic structure (UBERON:0002050)[TAO] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_40674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008781 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0008881.md b/md/UBERON/81/UBERON_0008881.md index e95643ac80..f7d553ed85 100644 --- a/md/UBERON/81/UBERON_0008881.md +++ b/md/UBERON/81/UBERON_0008881.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008881 * *Label* = rostral migratory stream - * *Definition* = Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1702[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:12453055,] + * *Definition* = Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1702, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:12453055, ] * *Comment* = Taxon notes: In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO] ## Synonyms - * RMS [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * rostral migratory pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_migratory_stream] + * RMS [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * rostral migratory pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_migratory_stream ] ## Cross-references @@ -24,7 +24,7 @@ * [regional part of telencephalon](../../UBERON/91/UBERON_0002791.md) * [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) * [connects](../../ts/core#connects.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) * [connects](../../ts/core#connects.md) some [postnatal subventricular zone](../../UBERON/22/UBERON_0004922.md) @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP[Wikipedia:Rostral_migratory_stream]] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The transient structure formed by neurons migrating from the subventricular zone into the olfactory bulb[MP:0004279]s - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0008981.md b/md/UBERON/81/UBERON_0008981.md index b3ef2c0836..b710f52fa3 100644 --- a/md/UBERON/81/UBERON_0008981.md +++ b/md/UBERON/81/UBERON_0008981.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008981 * *Label* = rhinencephalon - * *Definition* = The olfactory region of the brain, located in the cerebrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002785] + * *Definition* = The olfactory region of the brain, located in the cerebrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002785 ] * *Comment* = Obsoleted because The term rhinencephalon has been used to describe different structures at different points in time.[ISBN 0-8493-8631-4]. May refer to: a specific structure in aves; a part of the brain involved with olfaction; ## Synonyms - * olfactory brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002785] + * olfactory brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002785 ] ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = BTO:0002785 * *[consider](../../er/oboInOwl#consider.md)* = SCTID:361576004 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008981 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_0009481.md b/md/UBERON/81/UBERON_0009481.md index 6f8912c0e4..65ce578998 100644 --- a/md/UBERON/81/UBERON_0009481.md +++ b/md/UBERON/81/UBERON_0009481.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009481 * *Label* = cavity of pericardio-peritoneal canal - * *Definition* = A tube lumen that is part of a pericardio-peritoneal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tube lumen that is part of a pericardio-peritoneal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cavity of the pericardio-peritoneal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000564] + * cavity of the pericardio-peritoneal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000564 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pericardio-peritoneal canal](../../UBERON/75/UBERON_0006275.md) and [tube lumen](../../UBERON/82/UBERON_0005082.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0009581.md b/md/UBERON/81/UBERON_0009581.md index feb0dd87c7..86e8b8e0c1 100644 --- a/md/UBERON/81/UBERON_0009581.md +++ b/md/UBERON/81/UBERON_0009581.md @@ -6,9 +6,9 @@ ## Synonyms - * mantle layer lateral wall midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000910] + * mantle layer lateral wall midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000910 ] * midbrain lateral wall mantle layer - * mantle layer lateral wall mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000910] + * mantle layer lateral wall mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000910 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0009881.md b/md/UBERON/81/UBERON_0009881.md index 3a58411634..7b08a678bd 100644 --- a/md/UBERON/81/UBERON_0009881.md +++ b/md/UBERON/81/UBERON_0009881.md @@ -6,7 +6,7 @@ ## Synonyms - * ALPM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005041] + * ALPM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005041 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010081.md b/md/UBERON/81/UBERON_0010081.md index 1547d30882..d55e5e5dab 100644 --- a/md/UBERON/81/UBERON_0010081.md +++ b/md/UBERON/81/UBERON_0010081.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010081 * *Label* = future common hepatic duct - * *Definition* = An extrahepatic bile duct that has_potential_to_develop_into a common hepatic duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An extrahepatic bile duct that has_potential_to_develop_into a common hepatic duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [extrahepatic bile duct](../../UBERON/03/UBERON_0003703.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [common hepatic duct](../../UBERON/75/UBERON_0001175.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010181.md b/md/UBERON/81/UBERON_0010181.md index 38837948a6..09c5d32d0e 100644 --- a/md/UBERON/81/UBERON_0010181.md +++ b/md/UBERON/81/UBERON_0010181.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010181 * *Label* = straight venules of kidney - * *Definition* = The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_venules_of_kidney] + * *Definition* = The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_venules_of_kidney ] ## Synonyms - * set of straight venules of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72007] - * venulae rectae of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72007] - * venulae rectae renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae rectae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_venules_of_kidney] - * venulae rectae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_venules_of_kidney] - * venulae rectae renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_venules_of_kidney[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venulae recti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Straight_venules_of_kidney] + * set of straight venules of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72007 ] + * venulae rectae of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72007 ] + * venulae rectae renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae rectae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_venules_of_kidney ] + * venulae rectae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_venules_of_kidney ] + * venulae rectae renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_venules_of_kidney, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venulae recti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Straight_venules_of_kidney ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010581.md b/md/UBERON/81/UBERON_0010581.md index 318d0de627..64bd62d98f 100644 --- a/md/UBERON/81/UBERON_0010581.md +++ b/md/UBERON/81/UBERON_0010581.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010581 * *Label* = pedal digit 2 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 2 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 2 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 2 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2 mesenchyme](../../UBERON/96/UBERON_0005696.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010681.md b/md/UBERON/81/UBERON_0010681.md index a58d3c6f72..cfd0d97100 100644 --- a/md/UBERON/81/UBERON_0010681.md +++ b/md/UBERON/81/UBERON_0010681.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010681 * *Label* = pedal digit 2 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit 2 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit 2 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 2 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 2 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 2 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2 mesenchyme](../../UBERON/96/UBERON_0005696.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010681 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010881.md b/md/UBERON/81/UBERON_0010881.md index 29aa8a6025..56eb3b8e57 100644 --- a/md/UBERON/81/UBERON_0010881.md +++ b/md/UBERON/81/UBERON_0010881.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010881 * *Label* = limb cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a limb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a limb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [limb bone](../../UBERON/28/UBERON_0002428.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0010981.md b/md/UBERON/81/UBERON_0010981.md index 5b8a96d0e9..07cb92cb8a 100644 --- a/md/UBERON/81/UBERON_0010981.md +++ b/md/UBERON/81/UBERON_0010981.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0011281.md b/md/UBERON/81/UBERON_0011281.md index b1c047d8fd..a2745930cd 100644 --- a/md/UBERON/81/UBERON_0011281.md +++ b/md/UBERON/81/UBERON_0011281.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011281 * *Label* = nail of pedal digit 4 - * *Definition* = A nail that is part of a pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 4 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18742] - * fourth toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54353] - * nail of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54353] - * nail plate of fourth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54353] + * claw of digit 4 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18742 ] + * fourth toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54353 ] + * nail of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54353 ] + * nail plate of fourth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54353 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0011581.md b/md/UBERON/81/UBERON_0011581.md index 8f8420642b..b9e6bf3aca 100644 --- a/md/UBERON/81/UBERON_0011581.md +++ b/md/UBERON/81/UBERON_0011581.md @@ -32,8 +32,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9257 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0011981.md b/md/UBERON/81/UBERON_0011981.md index 081499f013..91cf15c3a8 100644 --- a/md/UBERON/81/UBERON_0011981.md +++ b/md/UBERON/81/UBERON_0011981.md @@ -9,9 +9,9 @@ * 6th finger * fore digit VI - * fore limb digit 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * fore limb digit 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * sixth finger - * hand digit 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 6 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011981 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0012081.md b/md/UBERON/81/UBERON_0012081.md index 02e6e4c6a2..2e0628e560 100644 --- a/md/UBERON/81/UBERON_0012081.md +++ b/md/UBERON/81/UBERON_0012081.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012081 * *Label* = patella pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a patella. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a patella. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [patella](../../UBERON/46/UBERON_0002446.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0012181.md b/md/UBERON/81/UBERON_0012181.md index 15c9cba6d5..18ffbf6288 100644 --- a/md/UBERON/81/UBERON_0012181.md +++ b/md/UBERON/81/UBERON_0012181.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012181 * *Label* = tonsil crypt - * *Definition* = Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tonsillar_crypts] + * *Definition* = Tonsils consist of an extensive system of crypts, which result in a large internal surface. The tonsils contain four lymphoid compartments that influence immune functions, namely the reticular crypt epithelium, the extrafollicular area, the mantle zones of lymphoid follicles, and the follicular germinal centers. In human palatine tonsils, the very first part exposed to the outside environment is tonsillar epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tonsillar_crypts ] ## Synonyms - * cryptae tonsillares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tonsillar_crypts[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tonsillar crypt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55044] + * cryptae tonsillares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tonsillar_crypts, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tonsillar crypt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55044 ] ## Cross-references * FMA:55044 * MA:0000777 * SCTID:143723007 - * UMLS:C0229876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tonsillar_Crypt] + * UMLS:C0229876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tonsillar_Crypt ] * Wikipedia:Tonsillar_crypts * ncithesaurus:Tonsillar_Crypt @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0012281.md b/md/UBERON/81/UBERON_0012281.md index 8cfb823ab4..d5cb8a26d8 100644 --- a/md/UBERON/81/UBERON_0012281.md +++ b/md/UBERON/81/UBERON_0012281.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012281 * *Label* = perianal gland - * *Definition* = A gland located in the area around the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Perianal_Gland] + * *Definition* = A gland located in the area around the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Perianal_Gland ] ## Synonyms - * circumanal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.734] - * perianal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.734] + * circumanal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.734 ] + * perianal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.734 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [exocrine gland](../../UBERON/65/UBERON_0002365.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal region](../../UBERON/53/UBERON_0001353.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012281 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0012481.md b/md/UBERON/81/UBERON_0012481.md index d096547a0d..50d1e7c6c5 100644 --- a/md/UBERON/81/UBERON_0012481.md +++ b/md/UBERON/81/UBERON_0012481.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0013181.md b/md/UBERON/81/UBERON_0013181.md index 3acf17a219..1dad88f0b5 100644 --- a/md/UBERON/81/UBERON_0013181.md +++ b/md/UBERON/81/UBERON_0013181.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013181 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0013481.md b/md/UBERON/81/UBERON_0013481.md index 16072a88e7..c14eb3fcac 100644 --- a/md/UBERON/81/UBERON_0013481.md +++ b/md/UBERON/81/UBERON_0013481.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013481 * *Label* = crypt of Lieberkuhn of ileum - * *Definition* = An intestinal crypt that is located in the ileum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intestinal crypt that is located in the ileum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0013581.md b/md/UBERON/81/UBERON_0013581.md index 8cf7540679..f8d49c695d 100644 --- a/md/UBERON/81/UBERON_0013581.md +++ b/md/UBERON/81/UBERON_0013581.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013581 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0014381.md b/md/UBERON/81/UBERON_0014381.md index 28f0e24c1a..29d1e2a9b6 100644 --- a/md/UBERON/81/UBERON_0014381.md +++ b/md/UBERON/81/UBERON_0014381.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014381 * *Label* = whorl of hair - * *Definition* = A patch of hair growing in the opposite direction of the rest of the hair. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hair_whorl] + * *Definition* = A patch of hair growing in the opposite direction of the rest of the hair. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hair_whorl ] * *Comment* = Hair whorls occur in most hairy animals, on the body as well as on the head. Hair whorls, also known as crowns, swirls, trichoglyphs, or cowlicks, can be either clockwise or counterclockwise in direction of growth.[WP] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76564 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014381 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0014481.md b/md/UBERON/81/UBERON_0014481.md index d1153355c4..5df6286aba 100644 --- a/md/UBERON/81/UBERON_0014481.md +++ b/md/UBERON/81/UBERON_0014481.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014481 * *Label* = sex skin - * *Definition* = An area of skin adjacent to the female external genitals of various lower primates that undergo marked alteration in turgidity and often in color during estrus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/sex%20skin] + * *Definition* = An area of skin adjacent to the female external genitals of various lower primates that undergo marked alteration in turgidity and often in color during estrus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/sex%20skin ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014481 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0014781.md b/md/UBERON/81/UBERON_0014781.md index 6971e28b0e..f183ece119 100644 --- a/md/UBERON/81/UBERON_0014781.md +++ b/md/UBERON/81/UBERON_0014781.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014781 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0014881.md b/md/UBERON/81/UBERON_0014881.md index fba0c77fdd..353a5c5a64 100644 --- a/md/UBERON/81/UBERON_0014881.md +++ b/md/UBERON/81/UBERON_0014881.md @@ -6,10 +6,10 @@ ## Synonyms - * distal end of phalanx of right thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37609] - * distal epiphysis of distal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37609] - * head of distal phalanx of first digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37609] - * head of distal phalanx of thumb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37609] + * distal end of phalanx of right thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37609 ] + * distal epiphysis of distal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37609 ] + * head of distal phalanx of first digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37609 ] + * head of distal phalanx of thumb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37609 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 1](../../UBERON/37/UBERON_0004337.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014881 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_0015081.md b/md/UBERON/81/UBERON_0015081.md index 0136f77498..321127a242 100644 --- a/md/UBERON/81/UBERON_0015081.md +++ b/md/UBERON/81/UBERON_0015081.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015081 + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2000181.md b/md/UBERON/81/UBERON_2000181.md index 8cf01f5c9a..189d9fd917 100644 --- a/md/UBERON/81/UBERON_2000181.md +++ b/md/UBERON/81/UBERON_2000181.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior zone of dorsal telencephalic area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000181] + * posterior zone of dorsal telencephalic area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000181 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_2000281.md b/md/UBERON/81/UBERON_2000281.md index a6b5930315..f8e9d98739 100644 --- a/md/UBERON/81/UBERON_2000281.md +++ b/md/UBERON/81/UBERON_2000281.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000281 * *Label* = obsolete hair cell posterior macula - * *Definition* = Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * sensory hair cells posterior macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000281[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * sensory hair cells posterior macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000281, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_2000381.md b/md/UBERON/81/UBERON_2000381.md index 8dd006d924..7352cb9726 100644 --- a/md/UBERON/81/UBERON_2000381.md +++ b/md/UBERON/81/UBERON_2000381.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2000481.md b/md/UBERON/81/UBERON_2000481.md index fe58496c84..1b025defae 100644 --- a/md/UBERON/81/UBERON_2000481.md +++ b/md/UBERON/81/UBERON_2000481.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2000581.md b/md/UBERON/81/UBERON_2000581.md index 25c4e66f41..ae5d443a2e 100644 --- a/md/UBERON/81/UBERON_2000581.md +++ b/md/UBERON/81/UBERON_2000581.md @@ -6,7 +6,7 @@ ## Synonyms - * anterior tuberal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000581] + * anterior tuberal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000581 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2000881.md b/md/UBERON/81/UBERON_2000881.md index 62dfeb0e73..d2aaa072cc 100644 --- a/md/UBERON/81/UBERON_2000881.md +++ b/md/UBERON/81/UBERON_2000881.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000881[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000881, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_2000981.md b/md/UBERON/81/UBERON_2000981.md index 503fc70048..ab6fc6532b 100644 --- a/md/UBERON/81/UBERON_2000981.md +++ b/md/UBERON/81/UBERON_2000981.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000981 * *Label* = somite 29 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 29 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001181.md b/md/UBERON/81/UBERON_2001181.md index 33327a7c9e..28c30c4456 100644 --- a/md/UBERON/81/UBERON_2001181.md +++ b/md/UBERON/81/UBERON_2001181.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001281.md b/md/UBERON/81/UBERON_2001281.md index 91082ec677..28b9ae90f8 100644 --- a/md/UBERON/81/UBERON_2001281.md +++ b/md/UBERON/81/UBERON_2001281.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001281 * *Label* = branchiostegal ray 2 - * *Definition* = Branchiostegal ray that is the second anterior-most ray in the adult. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Branchiostegal ray that is the second anterior-most ray in the adult. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001481.md b/md/UBERON/81/UBERON_2001481.md index 20bb517776..2c59cb2284 100644 --- a/md/UBERON/81/UBERON_2001481.md +++ b/md/UBERON/81/UBERON_2001481.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001481 * *Label* = ventral anterior lateral line nerve - * *Definition* = Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001581.md b/md/UBERON/81/UBERON_2001581.md index 801c0c4174..2517712be0 100644 --- a/md/UBERON/81/UBERON_2001581.md +++ b/md/UBERON/81/UBERON_2001581.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001581 * *Label* = ural centrum 2 - * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Ural centrum 2 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent, and with hypural 2 ventrally. Ural centrum 2 may be defined also as the second ural centrum bearing hypurals 3 or 3 and 4 or 3, 4 and more dorsal hypurals (diural terminology). ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001681.md b/md/UBERON/81/UBERON_2001681.md index 5f86c8bb56..05af97b37f 100644 --- a/md/UBERON/81/UBERON_2001681.md +++ b/md/UBERON/81/UBERON_2001681.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001681 * *Label* = cornu mesial process - * *Definition* = Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001781.md b/md/UBERON/81/UBERON_2001781.md index 0ba03b9400..48acf6e0ff 100644 --- a/md/UBERON/81/UBERON_2001781.md +++ b/md/UBERON/81/UBERON_2001781.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001881.md b/md/UBERON/81/UBERON_2001881.md index c4a3b06a54..d36e572906 100644 --- a/md/UBERON/81/UBERON_2001881.md +++ b/md/UBERON/81/UBERON_2001881.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001881 * *Label* = rib of vertebra 4 - * *Definition* = Rib that articulates with the parapophysis of the fourth centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Rib that articulates with the parapophysis of the fourth centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2001981.md b/md/UBERON/81/UBERON_2001981.md index 19ce56abe8..504ea81ffa 100644 --- a/md/UBERON/81/UBERON_2001981.md +++ b/md/UBERON/81/UBERON_2001981.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001981 * *Label* = vertebral element 7 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 7 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2002281.md b/md/UBERON/81/UBERON_2002281.md index 2eda8d6c04..4f84f971d4 100644 --- a/md/UBERON/81/UBERON_2002281.md +++ b/md/UBERON/81/UBERON_2002281.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2005181.md b/md/UBERON/81/UBERON_2005181.md index 227f874bad..f2641d8d54 100644 --- a/md/UBERON/81/UBERON_2005181.md +++ b/md/UBERON/81/UBERON_2005181.md @@ -7,7 +7,7 @@ ## Synonyms - * variable primary motoneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005181] + * variable primary motoneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005181 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_2005381.md b/md/UBERON/81/UBERON_2005381.md index 9e31d8d968..24da7c218a 100644 --- a/md/UBERON/81/UBERON_2005381.md +++ b/md/UBERON/81/UBERON_2005381.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005381 * *Label* = dorsal fin proximal radial bone 4 - * *Definition* = dorsal fin proximal radial 4 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 4 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 4](../../UBERON/81/UBERON_2105381.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2105381.md b/md/UBERON/81/UBERON_2105381.md index a04edc5275..a09d8664de 100644 --- a/md/UBERON/81/UBERON_2105381.md +++ b/md/UBERON/81/UBERON_2105381.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 4](../../UBERON/67/UBERON_2005367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_2205381.md b/md/UBERON/81/UBERON_2205381.md index c3a8f3df53..3692c400dc 100644 --- a/md/UBERON/81/UBERON_2205381.md +++ b/md/UBERON/81/UBERON_2205381.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205381 * *Label* = dorsal fin proximal radial cartilage 4 - * *Definition* = dorsal fin proximal radial 4 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 4 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 4](../../UBERON/81/UBERON_2105381.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000181.md b/md/UBERON/81/UBERON_3000181.md index 127bb9fce1..4423611eb9 100644 --- a/md/UBERON/81/UBERON_3000181.md +++ b/md/UBERON/81/UBERON_3000181.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000281.md b/md/UBERON/81/UBERON_3000281.md index 88f75b435c..a8adf52b13 100644 --- a/md/UBERON/81/UBERON_3000281.md +++ b/md/UBERON/81/UBERON_3000281.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000281 * *Label* = margo orbitalis of maxilla - * *Definition* = Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000381.md b/md/UBERON/81/UBERON_3000381.md index 3acef6c5c2..1d8b6f934a 100644 --- a/md/UBERON/81/UBERON_3000381.md +++ b/md/UBERON/81/UBERON_3000381.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000381 * *Label* = paranasal commissure - * *Definition* = Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Cartilaginous bridge that extends posteriorly to the anterolateral corner of the posterior nasal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * commissura lateralis nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000381] - * connection between lamina nariochoanalis and postnasal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000381] - * processus lingularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000381] + * commissura lateralis nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000381 ] + * connection between lamina nariochoanalis and postnasal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000381 ] + * processus lingularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000381 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000581.md b/md/UBERON/81/UBERON_3000581.md index 292eb45faf..b2d742e9ee 100644 --- a/md/UBERON/81/UBERON_3000581.md +++ b/md/UBERON/81/UBERON_3000581.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000581 * *Label* = sulcus dentalis of maxilla - * *Definition* = Groove located between the pars dentalis and the bases of the maxillary teeth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Groove located between the pars dentalis and the bases of the maxillary teeth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000681.md b/md/UBERON/81/UBERON_3000681.md index 63c540515b..7c65ecd371 100644 --- a/md/UBERON/81/UBERON_3000681.md +++ b/md/UBERON/81/UBERON_3000681.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3000981.md b/md/UBERON/81/UBERON_3000981.md index 11d2817891..46b4be388a 100644 --- a/md/UBERON/81/UBERON_3000981.md +++ b/md/UBERON/81/UBERON_3000981.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000981 * *Label* = limb external integument structure - * *Definition* = Dermal, epidermal, glandular and pigment structures of the limb integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dermal, epidermal, glandular and pigment structures of the limb integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3010081.md b/md/UBERON/81/UBERON_3010081.md index 67e2197dca..9424a2a1e2 100644 --- a/md/UBERON/81/UBERON_3010081.md +++ b/md/UBERON/81/UBERON_3010081.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3010181.md b/md/UBERON/81/UBERON_3010181.md index 80b70bd9b4..d9fa69295b 100644 --- a/md/UBERON/81/UBERON_3010181.md +++ b/md/UBERON/81/UBERON_3010181.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3010781.md b/md/UBERON/81/UBERON_3010781.md index b157f37d39..d226cbf87b 100644 --- a/md/UBERON/81/UBERON_3010781.md +++ b/md/UBERON/81/UBERON_3010781.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_3011081.md b/md/UBERON/81/UBERON_3011081.md index 60636d9c6c..ed60121701 100644 --- a/md/UBERON/81/UBERON_3011081.md +++ b/md/UBERON/81/UBERON_3011081.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002065 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/81/UBERON_4000081.md b/md/UBERON/81/UBERON_4000081.md index eeddce0e1f..b0cc4697cc 100644 --- a/md/UBERON/81/UBERON_4000081.md +++ b/md/UBERON/81/UBERON_4000081.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000081 * *Label* = cosmoid scale - * *Definition* = Multi-tissue integumentary element composed of enamel or enameloid, dentine and lamellar bone, and characterized by pore-canal system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Multi-tissue integumentary element composed of enamel or enameloid, dentine and lamellar bone, and characterized by pore-canal system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_4200081.md b/md/UBERON/81/UBERON_4200081.md index 2f091c6807..03567128a8 100644 --- a/md/UBERON/81/UBERON_4200081.md +++ b/md/UBERON/81/UBERON_4200081.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_4200181.md b/md/UBERON/81/UBERON_4200181.md index 9a75d9d453..1b0ff3fdbc 100644 --- a/md/UBERON/81/UBERON_4200181.md +++ b/md/UBERON/81/UBERON_4200181.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/81/UBERON_4300081.md b/md/UBERON/81/UBERON_4300081.md new file mode 100644 index 0000000000..af06fb9f70 --- /dev/null +++ b/md/UBERON/81/UBERON_4300081.md @@ -0,0 +1,34 @@ + +## Class : mesopterygium element + + * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300081 + * *Label* = mesopterygium element + +## Synonyms + + +## Cross-references + + +## Subsets + + +## Superclasses + + * [pectoral fin proximal radial element](../../UBERON/87/UBERON_2101587.md) + +## Equivalencies + + +## Other Logical Axioms + + +## Other Annotations + + * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD + +## Usage + + +## External Comments + diff --git a/md/UBERON/82/UBERON_0000082.md b/md/UBERON/82/UBERON_0000082.md index f1724ef51e..6d7e4eb645 100644 --- a/md/UBERON/82/UBERON_0000082.md +++ b/md/UBERON/82/UBERON_0000082.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0000382.md b/md/UBERON/82/UBERON_0000382.md index e2638de610..63ef7e0c2e 100644 --- a/md/UBERON/82/UBERON_0000382.md +++ b/md/UBERON/82/UBERON_0000382.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000382 * *Label* = apocrine sweat gland - * *Definition* = Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apocrine_sweat_gland] + * *Definition* = Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apocrine_sweat_gland ] * *Comment* = A note of confusion is the difference between apocrine secretion and apocrine sweat gland. Apocrine secretion refers to the apical loss of a cell's membrane to create cell blebs, thus creating a secretory product. Apocrine sweat gland refers to a structure, not a secretion process. Apocrine sweat glands actually use a merocrine type secretion, or that mediated by exocytosis of secretory granules. When "apocrine gland" is used without the word sweat, it is often referring to the gland which uses merocrine secretion, and not the secretion method. The important difference in apocrine sweat gland structure is its larger lumen, compared to the more narrow lumen of the eccrine sweat gland. ## Synonyms - * glandula sudorifera apocrina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apocrine_sweat_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * glandula sudorifera apocrina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apocrine_sweat_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:59155 * MESH:A10.336.899.206 * SCTID:399916008 - * UMLS:C0930083 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Apocrine_Sweat_Gland] + * UMLS:C0930083 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Apocrine_Sweat_Gland ] * Wikipedia:Apocrine_sweat_gland * ncithesaurus:Apocrine_Sweat_Gland @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0000482.md b/md/UBERON/82/UBERON_0000482.md index 44e0fe4748..e00a7d9807 100644 --- a/md/UBERON/82/UBERON_0000482.md +++ b/md/UBERON/82/UBERON_0000482.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000482 * *Label* = basal lamina of epithelium - * *Definition* = Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] * *Comment* = This class represents a continuous sheet of basal lamina which can underlie multiple epithelial cells over large regions. In contrast, the GO class 'basal lamina' represents a portion of substance on the scale of a single cell. ## Synonyms - * basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62918] - * basal lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000065] - * basal laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001592[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lamina basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basal_lamina[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62918 ] + * basal lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000065 ] + * basal laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001592, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lamina basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basal_lamina, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_Subcellular:sao1397492660 * TAO:0001485 * TGMA:0001850 - * UMLS:C0085872 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Basal_Lamina] + * UMLS:C0085872 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Basal_Lamina ] * VHOG:0001592 * WBbt:0005756 * Wikipedia:Basal_lamina @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A basal lamina is certainly present in Bilateria and was evaluated as an autapomorphy of this taxon.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0000982.md b/md/UBERON/82/UBERON_0000982.md index f5008e8d0e..dd194c520d 100644 --- a/md/UBERON/82/UBERON_0000982.md +++ b/md/UBERON/82/UBERON_0000982.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000982 * *Label* = skeletal joint - * *Definition* = Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000101[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Joint[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000101, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Joint, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000101] - * joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7490[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000101] - * articular joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001686] + * articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000101 ] + * joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7490, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000101 ] + * articular joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001686 ] ## Cross-references @@ -27,7 +27,7 @@ * RETIRED_EHDAA2:0003182 * SCTID:302536002 * TAO:0000367 - * UMLS:C0022417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Joint] + * UMLS:C0022417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Joint ] * VHOG:0001276 * VSAO:0000101 * Wikipedia:Joint @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectUnionOf( ) + * [nonsynovial joint](../../UBERON/34/UBERON_0011134.md)or[synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001082.md b/md/UBERON/82/UBERON_0001082.md index 297fd6df54..b8d95e8c8f 100644 --- a/md/UBERON/82/UBERON_0001082.md +++ b/md/UBERON/82/UBERON_0001082.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001082 * *Label* = epicardium of ventricle - * *Definition* = The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space.[Hu et al. 2001] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space.[Hu et al. 2001] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cardiac ventricle epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle visceral serous pericardium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epicardium of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epicardium of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epicardium of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epicardium of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart epicardium of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart epicardium of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart epicardium of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart epicardium of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle visceral serous pericardium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart visceral serous pericardium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart heart epicardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart visceral serous pericardium of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac ventricle epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle visceral serous pericardium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epicardium of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epicardium of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epicardium of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epicardium of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart epicardium of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart epicardium of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart epicardium of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart epicardium of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle visceral serous pericardium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart visceral serous pericardium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart heart epicardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart visceral serous pericardium of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ventricular epicardium - * visceral serous pericardium of heart of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral serous pericardium of heart of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral serous pericardium of heart of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * visceral serous pericardium of heart of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * visceral serous pericardium of heart of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral serous pericardium of heart of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral serous pericardium of heart of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * visceral serous pericardium of heart of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -51,7 +51,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epicardium](../../UBERON/48/UBERON_0002348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001182.md b/md/UBERON/82/UBERON_0001182.md index e1f07a932e..7233795c9f 100644 --- a/md/UBERON/82/UBERON_0001182.md +++ b/md/UBERON/82/UBERON_0001182.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001182 * *Label* = superior mesenteric artery - * *Definition* = In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_artery] + * *Definition* = In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_artery ] ## Synonyms * superior mesenteric arterial tree - * arteria mesenterica superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002303] - * arteria mesenterica superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria mesenterica superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002303 ] + * arteria mesenterica superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A07.231.114.565.755 * OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA * SCTID:362048004 - * UMLS:C0162861 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Mesenteric_Artery] + * UMLS:C0162861 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Mesenteric_Artery ] * VHOG:0000754 * Wikipedia:Superior_mesenteric_artery * galen:SuperiorMesentericArtery @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001282.md b/md/UBERON/82/UBERON_0001282.md index c6bab34f42..1a395189a5 100644 --- a/md/UBERON/82/UBERON_0001282.md +++ b/md/UBERON/82/UBERON_0001282.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001282 * *Label* = intralobular bile duct - * *Definition* = The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canals_of_Hering] + * *Definition* = The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canals_of_Hering ] * *Comment* = Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct) ## Synonyms - * canal of Herring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17545] - * cholangiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17545] + * canal of Herring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17545 ] + * cholangiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17545 ] * canal of Hering - * canals of Hering [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canals_of_Hering[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * duct of Herring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canals_of_Hering] - * intrahepatic bile ductule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Canals_of_Hering] + * canals of Hering [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canals_of_Hering, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * duct of Herring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canals_of_Hering ] + * intrahepatic bile ductule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Canals_of_Hering ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002669 * SCTID:227002 * SCTID:269922006 - * UMLS:C0227517 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Canal_of_Hering] + * UMLS:C0227517 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Canal_of_Hering ] * Wikipedia:Canals_of_Hering * ncithesaurus:Canal_of_Hering @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001382.md b/md/UBERON/82/UBERON_0001382.md index 4689f97c2f..ecdbc41355 100644 --- a/md/UBERON/82/UBERON_0001382.md +++ b/md/UBERON/82/UBERON_0001382.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001382 * *Label* = pectineus muscle - * *Definition* = An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectineus_muscle] + * *Definition* = An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectineus_muscle ] * *Comment* = Definition generalized to accommodate AAO class - "Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft." [AAO:0010036] ## Synonyms - * M. pectineus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010036] + * M. pectineus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010036 ] * pectineus - * musculus pectineus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pectineus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus pectineus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pectineus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * FMA:22440 * MA:0002353 * SCTID:245017006 - * UMLS:C0224447 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pectineus] + * UMLS:C0224447 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pectineus ] * Wikipedia:Pectineus_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001482.md b/md/UBERON/82/UBERON_0001482.md index cb9f42f607..ef7078c5c6 100644 --- a/md/UBERON/82/UBERON_0001482.md +++ b/md/UBERON/82/UBERON_0001482.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001482 * *Label* = muscle of shoulder - * *Definition* = A muscle organ that is part of a shoulder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a shoulder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * muscle organ of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * shoulder muscle - * shoulder muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * shoulder muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001582.md b/md/UBERON/82/UBERON_0001582.md index 5ac0b5915a..d7d69cba76 100644 --- a/md/UBERON/82/UBERON_0001582.md +++ b/md/UBERON/82/UBERON_0001582.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001582 * *Label* = buccinator muscle - * *Definition* = a thin quadrilateral muscle, occupying the interval between the maxilla and the mandible at the side of the face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccinator_muscle] + * *Definition* = a thin quadrilateral muscle, occupying the interval between the maxilla and the mandible at the side of the face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccinator_muscle ] ## Synonyms * buccinator * buccinatorius * musculus buccinator - * musculus buccinator [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buccinator_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus buccinator [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buccinator_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:46834 * MA:0002272 * SCTID:244747005 - * UMLS:C0224121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Buccinator] + * UMLS:C0224121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Buccinator ] * Wikipedia:Buccinator_muscle * http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001682.md b/md/UBERON/82/UBERON_0001682.md index 75f32cf52a..5d8ffc72ed 100644 --- a/md/UBERON/82/UBERON_0001682.md +++ b/md/UBERON/82/UBERON_0001682.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001682 * *Label* = palatine bone - * *Definition* = A paired dermal bone situated in the mid-palate[Palaeos]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html] + * *Definition* = A paired dermal bone situated in the mid-palate[Palaeos]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/bones/dermal/palatal-palatines.html ] * *Comment* = Fusion of dermopalatine+autopalatine. ## Synonyms * palatine - * dermopalatine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryD.html] - * os palatinum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dermopalatine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryD.html ] + * os palatinum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * palate bone - * palatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Palatine_bone] + * palatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Palatine_bone ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001495 * SCTID:244654005 * TAO:0000015 - * UMLS:C0222734 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palatine_Bone] + * UMLS:C0222734 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palatine_Bone ] * Wikipedia:Palatine_bone * http://palaeos.com/vertebrates/bones/dermal/images/289x311xPalatine1.gif.pagespeed.ic.tglmNBrF4D.png * http://upload.wikimedia.org/wikipedia/commons/4/44/Gray996.png @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Dermal bone that forms the antero-lateral region of the palate and is located ventral to the autopalatine. The dermopalatine is bilaterally paired and usually bears teeth.[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = Dermopalatine: same as palatine. The prefix is used by fish people because the palatine is a dermal replacement bone for a section of the autopalatine section of the palatoquadrate. In that context, palatine is potentially ambiguous.[Palaeos] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In ostariophysans, the dermopalatine is absent.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001782.md b/md/UBERON/82/UBERON_0001782.md index d52fa782db..d798952060 100644 --- a/md/UBERON/82/UBERON_0001782.md +++ b/md/UBERON/82/UBERON_0001782.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001782 * *Label* = pigmented layer of retina - * *Definition* = A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retinal_pigment_epithelium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retinal_pigment_epithelium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers ## Synonyms @@ -12,17 +12,17 @@ * pigment epithelium of retina * pigmented retina epithelium * pigmented retinal epithelium - * retinal pigment epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005201[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retinal_pigment_epithelium] - * retinal pigmented epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000144] + * retinal pigment epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005201, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retinal_pigment_epithelium ] + * retinal pigmented epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000144 ] * stratum pigmentosum (retina) * PRE * RPE - * epithelium, retinal pigment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001177] - * p. pigmentosa retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retinal_pigment_epithelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * epithelium, retinal pigment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001177 ] + * p. pigmentosa retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retinal_pigment_epithelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pigmented epithelium * pigmented retina - * retinal pigment layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000536] - * stratum pigmentosa retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retinal_pigment_epithelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * retinal pigment layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000536 ] + * stratum pigmentosa retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retinal_pigment_epithelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,7 +36,7 @@ * MA:0000279 * SCTID:280662007 * TAO:0000144 - * UMLS:C0035322 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retinal_Pigment_Epithelium] + * UMLS:C0035322 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retinal_Pigment_Epithelium ] * VHOG:0000536 * Wikipedia:Retinal_pigment_epithelium * XAO:0003217 @@ -62,7 +62,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [presumptive retinal pigmented epithelium](../../UBERON/24/UBERON_0005424.md) and [layer of retina](../../UBERON/81/UBERON_0001781.md) ## Other Logical Axioms @@ -73,8 +73,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The monolayer of pigmented epithelium covering the neural retina.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001882.md b/md/UBERON/82/UBERON_0001882.md index f933594358..8e42f86702 100644 --- a/md/UBERON/82/UBERON_0001882.md +++ b/md/UBERON/82/UBERON_0001882.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001882 * *Label* = nucleus accumbens - * *Definition* = A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_727] + * *Definition* = A region of the brain consisting of a collection of neurons located in the forebrain ventral to the caudate and putamen. (caudoputamen in rodent) and continuous with these structures. There is no distinct boundary between the nucleus accumbens and the caudate/putamen, but in rodents, it can be identified by its lack of traversing fiber bundles in comparison to the dorsal striatum. Its principle neuron is the medium spiny neuron. Together with the neostriatum (caudate nucleus and putamen), the nucleus accumbens forms the striatum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_727 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,9 +11,9 @@ * accumbens nucleus * colliculus of caudate nucleus * nucleus accumbens septi - * accessory neurosecretory nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Acc] - * colliculus nuclei caudati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:277[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus accumbens septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_accumbens[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * accessory neurosecretory nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Acc ] + * colliculus nuclei caudati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:277, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus accumbens septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_accumbens, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,9 +34,9 @@ * MAT:0000512 * MESH:A08.186.211.730.885.105.683 * NIF_GrossAnatomy:birnlex_727 - * NeuroNames:277 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_727] + * NeuroNames:277 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_727 ] * SCTID:427667007 - * UMLS:C0028633 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Accumbens_Nucleus] + * UMLS:C0028633 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Accumbens_Nucleus ] * Wikipedia:Nucleus_accumbens * http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg @@ -63,8 +63,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO][GO:0021768]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0001982.md b/md/UBERON/82/UBERON_0001982.md index 3ffcb38f79..aba9c34bd4 100644 --- a/md/UBERON/82/UBERON_0001982.md +++ b/md/UBERON/82/UBERON_0001982.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001982 * *Label* = capillary - * *Definition* = Any of the smallest blood vessels connecting arterioles with venules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capillary] + * *Definition* = Any of the smallest blood vessels connecting arterioles with venules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capillary ] * *Comment* = Structure notes: capillaries lack tunica media and tunica adventitia; only the endothelial wall of the tunica intima belongs ## Synonyms @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:nlx_anat_090902 * OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA * TAO:0005250 - * UMLS:C0935624 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Capillary] + * UMLS:C0935624 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Capillary ] * VHOG:0001253 * Wikipedia:Capillary * XAO:0000116 @@ -49,7 +49,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [connects](../../ts/core#connects.md) some [arteriole](../../UBERON/80/UBERON_0001980.md) and [connects](../../ts/core#connects.md) some [venule](../../UBERON/79/UBERON_0001979.md) ## Other Logical Axioms @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the tiny blood vessels connecting the arterioles to the venules.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002082.md b/md/UBERON/82/UBERON_0002082.md index 51ea0c574b..c47989e0b5 100644 --- a/md/UBERON/82/UBERON_0002082.md +++ b/md/UBERON/82/UBERON_0002082.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002082 * *Label* = cardiac ventricle - * *Definition* = Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7100] + * *Definition* = Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7100 ] ## Synonyms @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA * SCTID:277699000 * TAO:0000009 - * UMLS:C0018827 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cardiac_Ventricle] + * UMLS:C0018827 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cardiac_Ventricle ] * VHOG:0000435 * XAO:0003193 * ZFA:0000009 @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of four heart chambers.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the primitive vertebrate heart the four chambers are: 1. Sinus venosus (...) 2. Atrium (...) 3. Ventricle (...) 4. Conus arteriosus (...)[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002182.md b/md/UBERON/82/UBERON_0002182.md index 98e5df6ae3..9f3e779b0e 100644 --- a/md/UBERON/82/UBERON_0002182.md +++ b/md/UBERON/82/UBERON_0002182.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002182 * *Label* = main bronchus - * *Definition* = One of two branches of the trachea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Main_bronchus] + * *Definition* = One of two branches of the trachea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Main_bronchus ] * *Comment* = In humans, histologically identical to trachea. ## Synonyms - * bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7405] - * extrapulmonary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611] + * bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7405 ] + * extrapulmonary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611 ] * mainstem bronchus * major bronchus - * primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7405] - * principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7405] + * primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7405 ] + * principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7405 ] * proximal bronchus ## Cross-references @@ -25,7 +25,7 @@ * MA:0000438 * OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA * SCTID:245508000 - * UMLS:C0024496 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Main_Bronchus] + * UMLS:C0024496 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Main_Bronchus ] * VHOG:0000370 * Wikipedia:Main_bronchus * ncithesaurus:Main_Bronchus @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002282.md b/md/UBERON/82/UBERON_0002282.md index 90dadbbef8..2faf120285 100644 --- a/md/UBERON/82/UBERON_0002282.md +++ b/md/UBERON/82/UBERON_0002282.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002282 * *Label* = stria vascularis of cochlear duct - * *Definition* = The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stria_vascularis] + * *Definition* = The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stria_vascularis ] * *Comment* = AO notes: represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps ## Synonyms - * psalterial cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000048] + * psalterial cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000048 ] * stria vascularis - * stria vascularis of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77832] - * vascular stripe of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000048] - * stria vascularis ductus cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001819[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vascular stria of cochlear duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001819] + * stria vascularis of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77832 ] + * vascular stripe of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000048 ] + * stria vascularis ductus cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001819, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vascular stria of cochlear duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001819 ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A09.246.631.246.292.876 * NIF_GrossAnatomy:birnlex_2525 * SCTID:279842002 - * UMLS:C0229477 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2525] + * UMLS:C0229477 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2525 ] * Wikipedia:Stria_vascularis * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002382.md b/md/UBERON/82/UBERON_0002382.md index 0535fad591..c9e543465b 100644 --- a/md/UBERON/82/UBERON_0002382.md +++ b/md/UBERON/82/UBERON_0002382.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002382 * *Label* = rectus abdominis muscle - * *Definition* = The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (57) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, oreven rarerasymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectus_abdominis_muscle] + * *Definition* = The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (57) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, oreven rarerasymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectus_abdominis_muscle ] ## Synonyms - * m. rectus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010789] - * musculus rectus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010789] - * rectus abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002364] + * m. rectus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010789 ] + * musculus rectus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010789 ] + * rectus abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002364 ] * six pack ## Cross-references @@ -23,7 +23,7 @@ * MA:0002364 * MESH:A02.633.567.050.800 * SCTID:256672008 - * UMLS:C0206066 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rectus_Abdominis] + * UMLS:C0206066 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rectus_Abdominis ] * VHOG:0000863 * Wikipedia:Rectus_abdominis_muscle * XAO:0004128 @@ -54,8 +54,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002482.md b/md/UBERON/82/UBERON_0002482.md index 47d7287aa3..0e415d6a74 100644 --- a/md/UBERON/82/UBERON_0002482.md +++ b/md/UBERON/82/UBERON_0002482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002482 * *Label* = lamellar bone - * *Definition* = Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone#Woven_or_lamellar] + * *Definition* = Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone#Woven_or_lamellar ] * *Comment* = histological classification, lamellar vs woven. Note that only FMA has woven ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002582.md b/md/UBERON/82/UBERON_0002582.md index a4d14aaec5..acea276228 100644 --- a/md/UBERON/82/UBERON_0002582.md +++ b/md/UBERON/82/UBERON_0002582.md @@ -6,9 +6,9 @@ ## Synonyms - * anterior calcarine fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83750] - * sulcus calcarinus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1072] - * accs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1072[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * anterior calcarine fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83750 ] + * sulcus calcarinus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1072 ] + * accs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1072, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -16,8 +16,8 @@ * BAMS:acs * FMA:83750 * NIF_GrossAnatomy:birnlex_1072 - * NeuroNames:45 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1072] - * UMLS:C0262187 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1072] + * NeuroNames:45 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1072 ] + * UMLS:C0262187 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1072 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002682.md b/md/UBERON/82/UBERON_0002682.md index 8b9d926c90..95b1e114e6 100644 --- a/md/UBERON/82/UBERON_0002682.md +++ b/md/UBERON/82/UBERON_0002682.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002682 * *Label* = abducens nucleus - * *Definition* = The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abducens_nucleus] + * *Definition* = The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abducens_nucleus ] * *Comment* = part of medulla oblongata in ABA and ZFA; part of pons in MA and pontine tegmentum in NIF; note that pons/medulla are spatially disjoint in ABA. ## Synonyms - * abducens VI nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001010] - * abducens motor nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000713[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * abducens motor nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000713] - * abducens nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504] - * abducent nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504] - * motor nucleus VI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000713] - * nVI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000713] - * nucleus nervi abducentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of abducens nerve (VI) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504] - * nucleus of abducens nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504] - * sixth cranial nerve nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54504] - * abducens nucleus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:585] - * nucleus abducens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:585[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus nervi abducentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abducens_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abducens VI nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001010 ] + * abducens motor nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000713, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * abducens motor nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000713 ] + * abducens nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504 ] + * abducent nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504 ] + * motor nucleus VI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000713 ] + * nVI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000713 ] + * nucleus nervi abducentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of abducens nerve (VI) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504 ] + * nucleus of abducens nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504 ] + * sixth cranial nerve nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54504 ] + * abducens nucleus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:585 ] + * nucleus abducens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:585, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus nervi abducentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abducens_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,11 +34,11 @@ * FMA:54504 * MA:0001010 * NIF_GrossAnatomy:birnlex_1366 - * NeuroNames:585 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1366] + * NeuroNames:585 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1366 ] * SCTID:280165008 * TAO:0000713 - * UMLS:C0152407 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1366] - * UMLS:C0152407 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abducens_Nucleus] + * UMLS:C0152407 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1366 ] + * UMLS:C0152407 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abducens_Nucleus ] * Wikipedia:Abducens_nucleus * ZFA:0000713 * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png @@ -67,8 +67,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002782.md b/md/UBERON/82/UBERON_0002782.md index cf0c1092e5..b892000242 100644 --- a/md/UBERON/82/UBERON_0002782.md +++ b/md/UBERON/82/UBERON_0002782.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002782 * *Label* = medial superior olivary nucleus - * *Definition* = The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_olivary_complex] + * *Definition* = The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_olivary_complex ] ## Synonyms - * chief nucleus of superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * chief superior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * main superior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * medial superior olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * nucleus laminaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1682] - * principal superior olivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * superior olivary nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72473] - * nucleus olivaris superior medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:572[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior olivary complex, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:572] - * superior paraolivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:572] - * superior parolivary nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:572] + * chief nucleus of superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * chief superior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * main superior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * medial superior olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * nucleus laminaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1682 ] + * principal superior olivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * superior olivary nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72473 ] + * nucleus olivaris superior medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:572, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior olivary complex, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:572 ] + * superior paraolivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:572 ] + * superior parolivary nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:572 ] ## Cross-references @@ -25,8 +25,8 @@ * BM:Pons-SOM * FMA:72473 * NIF_GrossAnatomy:birnlex_1682 - * NeuroNames:572 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1682] - * UMLS:C0175430 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1682] + * NeuroNames:572 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1682 ] + * UMLS:C0175430 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1682 ] * Wikipedia:Superior_olivary_complex * http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002882.md b/md/UBERON/82/UBERON_0002882.md index a5c96a70f8..1bba752890 100644 --- a/md/UBERON/82/UBERON_0002882.md +++ b/md/UBERON/82/UBERON_0002882.md @@ -6,11 +6,11 @@ ## Synonyms - * SSp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2658[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus substantiae grisea ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:776[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus substantiae griseae ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:776[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus supraspinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:776[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * primary somatosensory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SSp] + * SSp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_2658, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus substantiae grisea ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:776, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus substantiae griseae ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:776, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus supraspinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:776, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * primary somatosensory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SSp ] ## Cross-references @@ -19,8 +19,8 @@ * EV:0100282 * FMA:74507 * NIF_GrossAnatomy:birnlex_2658 - * NeuroNames:776 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2658] - * UMLS:C0175538 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2658] + * NeuroNames:776 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2658 ] + * UMLS:C0175538 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2658 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0002982.md b/md/UBERON/82/UBERON_0002982.md index 46e30ea04a..975d653356 100644 --- a/md/UBERON/82/UBERON_0002982.md +++ b/md/UBERON/82/UBERON_0002982.md @@ -6,10 +6,10 @@ ## Synonyms - * nucleus pulvinaris inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_830] - * nucleus pulvinaris inferior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_830] - * nucleus pulvinaris thalami, pars inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_830] - * IPul [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_830[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * nucleus pulvinaris inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_830 ] + * nucleus pulvinaris inferior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_830 ] + * nucleus pulvinaris thalami, pars inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_830 ] + * IPul [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_830, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -18,8 +18,8 @@ * BM:Die-Th-Pl-Pli * FMA:62183 * NIF_GrossAnatomy:birnlex_830 - * NeuroNames:332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_830] - * UMLS:C0228346 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_830] + * NeuroNames:332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_830 ] + * UMLS:C0228346 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_830 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003082.md b/md/UBERON/82/UBERON_0003082.md index 91e9d8926a..62e4226d6c 100644 --- a/md/UBERON/82/UBERON_0003082.md +++ b/md/UBERON/82/UBERON_0003082.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003082 * *Label* = myotome - * *Definition* = A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003939[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17313522[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myotome[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003939, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17313522, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myotome, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class. ## Synonyms - * myomeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001056[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * myomeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001056, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * muscle plate * myomere * myotome region * myotomes - * myotomus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myotome[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * myotomus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myotome, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * EMAPA:32841 * SCTID:344535001 * TAO:0001056 - * UMLS:C1513802 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myotome_Region] + * UMLS:C1513802 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myotome_Region ] * VHOG:0001244 * Wikipedia:Myotome * XAO:0000315 @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the skeletal muscle of the body axis is chiefly derived from an early embryonic compartment, known as the myotome.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003182.md b/md/UBERON/82/UBERON_0003182.md index f868c4d479..e70cef8fb7 100644 --- a/md/UBERON/82/UBERON_0003182.md +++ b/md/UBERON/82/UBERON_0003182.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004603 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000725 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003182 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/82/UBERON_0003282.md b/md/UBERON/82/UBERON_0003282.md index cbb5a51c05..9300b879d0 100644 --- a/md/UBERON/82/UBERON_0003282.md +++ b/md/UBERON/82/UBERON_0003282.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003282 * *Label* = mesentery of heart - * *Definition* = A mesentery that surrounds the heart. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th] + * *Definition* = A mesentery that surrounds the heart. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th ] ## Synonyms - * heart mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000098] + * heart mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000098 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003382.md b/md/UBERON/82/UBERON_0003382.md index 7e8dea56b7..34cd1cc412 100644 --- a/md/UBERON/82/UBERON_0003382.md +++ b/md/UBERON/82/UBERON_0003382.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003382 * *Label* = cardiac muscle of left ventricle - * *Definition* = A portion of cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a left ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle tissue of left ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83453] - * left ventricular cardiac muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003220] - * left ventricle cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001234] + * cardiac muscle tissue of left ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83453 ] + * left ventricular cardiac muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003220 ] + * left ventricle cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001234 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003482.md b/md/UBERON/82/UBERON_0003482.md index 52b5cf3af1..4cdb1c743a 100644 --- a/md/UBERON/82/UBERON_0003482.md +++ b/md/UBERON/82/UBERON_0003482.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003482 * *Label* = vein of trabecular bone - * *Definition* = A portion of vein that is part of a trabecular bone tissue [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of vein that is part of a trabecular bone tissue [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * spongy bone vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecular bone tissue vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecular bone vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of spongy bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vein of trabecular bone tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * spongy bone vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecular bone tissue vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecular bone vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of spongy bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vein of trabecular bone tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trabecular bone tissue](../../UBERON/83/UBERON_0002483.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003582.md b/md/UBERON/82/UBERON_0003582.md index cbc5a52a7d..7e799986f8 100644 --- a/md/UBERON/82/UBERON_0003582.md +++ b/md/UBERON/82/UBERON_0003582.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003582 * *Label* = nasopharynx connective tissue - * *Definition* = A portion of connective tissue that is part of a nasopharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a nasopharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasal part of pharynx textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nasopharynx textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhinopharynx textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of nasal part of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of nasopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of rhinopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasal part of pharynx textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nasopharynx textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhinopharynx textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of nasal part of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of nasopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of rhinopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nasopharynx](../../UBERON/28/UBERON_0001728.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003682.md b/md/UBERON/82/UBERON_0003682.md index 0456195f43..3a11d024a8 100644 --- a/md/UBERON/82/UBERON_0003682.md +++ b/md/UBERON/82/UBERON_0003682.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003682 * *Label* = palatal muscle - * *Definition* = The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.633.567.750[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_soft_palate_and_fauces] + * *Definition* = The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.633.567.750, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_soft_palate_and_fauces ] * *Comment* = Editor notes: consider extra class for fauces. AO notes: see also FMA:71438 ## Synonyms - * muscle of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46726] + * muscle of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46726 ] * musculi palati mollis et faucium - * palatal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46726] - * palate muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46726] - * palatine muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46726] - * musculi palati mollis et faucium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscles_of_soft_palate_and_fauces[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * palatal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46726 ] + * palate muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46726 ] + * palatine muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46726 ] + * musculi palati mollis et faucium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscles_of_soft_palate_and_fauces, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.633.567.750 * SCTID:244794002 * SCTID:73711005 - * UMLS:C0030213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Palatal_Muscle] + * UMLS:C0030213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Palatal_Muscle ] * Wikipedia:Muscles_of_soft_palate_and_fauces * http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png * ncithesaurus:Palatal_Muscle @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [soft palate](../../UBERON/33/UBERON_0001733.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003882.md b/md/UBERON/82/UBERON_0003882.md index ba84ca238d..084bb68815 100644 --- a/md/UBERON/82/UBERON_0003882.md +++ b/md/UBERON/82/UBERON_0003882.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003882 * *Label* = CA2 field of hippocampus - * *Definition* = Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1362] + * *Definition* = Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1362 ] ## Synonyms @@ -13,18 +13,18 @@ * CA2 field of cornu ammonis * CA2 field of hippocampus * hippocampus CA2 - * regio ii cornus ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74044[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio ii hippocampi proprii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74044[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio ii cornus ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74044, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio ii hippocampi proprii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74044, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * region 2 of Ammon's horn - * region ii of ammon's horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74044] - * region ii of hippocampus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74044] - * CA2 field of the Ammon horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CA2] - * CA2 field of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184] - * cornu Ammonis 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * field CA2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184] - * field CA2 of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184] - * field CA2, Ammon's horn (Lorente de Ns) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184] - * region CA2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:184] + * region ii of ammon's horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74044 ] + * region ii of hippocampus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74044 ] + * CA2 field of the Ammon horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CA2 ] + * CA2 field of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184 ] + * cornu Ammonis 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * field CA2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184 ] + * field CA2 of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184 ] + * field CA2, Ammon's horn (Lorente de Ns) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184 ] + * region CA2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:184 ] ## Cross-references @@ -35,9 +35,9 @@ * FMA:74044 * MA:0000951 * NIF_GrossAnatomy:birnlex_1362 - * NeuroNames:184 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1362] - * UMLS:C0694599 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1362] - * UMLS:C0694599 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:CA2_Field_of_the_Cornu_Ammonis] + * NeuroNames:184 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1362 ] + * UMLS:C0694599 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1362 ] + * UMLS:C0694599 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:CA2_Field_of_the_Cornu_Ammonis ] * ncithesaurus:CA2_Field_of_the_Cornu_Ammonis ## Subsets @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0003982.md b/md/UBERON/82/UBERON_0003982.md index 1786ccfa2d..5e16e8ab68 100644 --- a/md/UBERON/82/UBERON_0003982.md +++ b/md/UBERON/82/UBERON_0003982.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003982 * *Label* = mature ovarian follicle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009364] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009364 ] ## Synonyms - * ovarian follicle stage IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001264] - * ovary mature follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001709] - * antral follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000389] - * folliculi ovarici vesiculosi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000389] - * preovulatory follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000389] + * ovarian follicle stage IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001264 ] + * ovary mature follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001709 ] + * antral follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000389 ] + * folliculi ovarici vesiculosi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000389 ] + * preovulatory follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000389 ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Stage IV (690-730 microns) are oocyte maturation. Selman et al, 1993.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004082.md b/md/UBERON/82/UBERON_0004082.md index 57b57137f4..9b34e9b42c 100644 --- a/md/UBERON/82/UBERON_0004082.md +++ b/md/UBERON/82/UBERON_0004082.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004082 * *Label* = cerebellum vermis lobule VIII - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009996] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009996 ] ## Synonyms @@ -11,13 +11,13 @@ * lobule VIII of cerebellum vermis * neuraxis pyramis * neuraxis pyramus - * pyramis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081233] - * pyramis of vermis of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83888] - * pyramus (VIII) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:PYR] + * pyramis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081233 ] + * pyramis of vermis of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83888 ] + * pyramus (VIII) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:PYR ] * pyramus of cerebellum - * pyramus of vermis of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83888] - * vermic lobule VIII [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081233] - * pyramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001005] + * pyramus of vermis of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83888 ] + * vermic lobule VIII [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081233 ] + * pyramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001005 ] * pyramus ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002312 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004182.md b/md/UBERON/82/UBERON_0004182.md index f33fba3dba..fb6b4bae15 100644 --- a/md/UBERON/82/UBERON_0004182.md +++ b/md/UBERON/82/UBERON_0004182.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004182 * *Label* = mammary gland cord - * *Definition* = Mammary gland cords form when the mammary gland bud invades the mammary fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060652] + * *Definition* = Mammary gland cords form when the mammary gland bud invades the mammary fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060652 ] * *Comment* = TODO - mammary placode ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial cord](../../UBERON/54/UBERON_0005154.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary duct](../../UBERON/65/UBERON_0001765.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004382.md b/md/UBERON/82/UBERON_0004382.md index dca636912e..3a751d73b0 100644 --- a/md/UBERON/82/UBERON_0004382.md +++ b/md/UBERON/82/UBERON_0004382.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004382 * *Label* = epiphysis of humerus - * *Definition* = An epiphysis that is part of a humerus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a humerus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * humeral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * humeral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [humerus](../../UBERON/76/UBERON_0000976.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004482.md b/md/UBERON/82/UBERON_0004482.md index 94d4bf7b97..6aab3cf518 100644 --- a/md/UBERON/82/UBERON_0004482.md +++ b/md/UBERON/82/UBERON_0004482.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004482 * *Label* = musculature of lower limb - * *Definition* = Any collection of muscles that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * free lower limb musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50399] - * muscle group of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50399] - * musculature of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50399] - * set of muscles of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50399] + * free lower limb musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50399 ] + * muscle group of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50399 ] + * musculature of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50399 ] + * set of muscles of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50399 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004582.md b/md/UBERON/82/UBERON_0004582.md index 83f91ee2aa..cc320cad11 100644 --- a/md/UBERON/82/UBERON_0004582.md +++ b/md/UBERON/82/UBERON_0004582.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004582 * *Label* = venous system - * *Definition* = The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The part of the cardiovascular system consisting of all venous vessels. In vertebrates with a double circulation, this can be divided into systemic and pulmonary portions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -17,7 +17,7 @@ * EMAPA:16240 * MA:0002720 * SCTID:362060003 - * UMLS:C1267406 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Venous_System] + * UMLS:C1267406 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Venous_System ] * VHOG:0000277 * ncithesaurus:Venous_System @@ -39,8 +39,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The appearance of Chordata and subsequently the vertebrates is accompanied by a rapid structural diversification of this primitive linear heart: looping, unidirectional circulation, an enclosed vasculature, and the conduction system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004682.md b/md/UBERON/82/UBERON_0004682.md index 81fc458ea8..1e80f9d023 100644 --- a/md/UBERON/82/UBERON_0004682.md +++ b/md/UBERON/82/UBERON_0004682.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004682 * *Label* = corona radiata - * *Definition* = For the structure in embryology, see Corona radiata (embryology) In neuroanatomy, the corona radiata is a white matter sheet that continues caudally as the internal capsule and rostrally as the centrum semiovale. This sheet of axons contains both descending and ascending axons that carry nearly all of the neural traffic from and to the cerebral cortex. The corona radiata is associated with the corticospinal tract, the corticopontine tract, and the corticobulbar tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corona_radiata] + * *Definition* = For the structure in embryology, see Corona radiata (embryology) In neuroanatomy, the corona radiata is a white matter sheet that continues caudally as the internal capsule and rostrally as the centrum semiovale. This sheet of axons contains both descending and ascending axons that carry nearly all of the neural traffic from and to the cerebral cortex. The corona radiata is associated with the corticospinal tract, the corticopontine tract, and the corticobulbar tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corona_radiata ] ## Synonyms - * corona radiata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090903] + * corona radiata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090903 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004782.md b/md/UBERON/82/UBERON_0004782.md index 5c8ec70707..4279b03f49 100644 --- a/md/UBERON/82/UBERON_0004782.md +++ b/md/UBERON/82/UBERON_0004782.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004782 * *Label* = gastrointestinal system serosa - * *Definition* = A serous membrane that is part of a digestive system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a digestive system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * digestive system serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digestive system serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastrointestinal system serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of digestive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * digestive system serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digestive system serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastrointestinal system serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of digestive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004882.md b/md/UBERON/82/UBERON_0004882.md index befad5ee8b..0271c50fa5 100644 --- a/md/UBERON/82/UBERON_0004882.md +++ b/md/UBERON/82/UBERON_0004882.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004882 * *Label* = eponychium - * *Definition* = Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eponychium] + * *Definition* = Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eponychium ] ## Synonyms - * cuticle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002704] + * cuticle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002704 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0004982.md b/md/UBERON/82/UBERON_0004982.md index e2d74bd4a3..5161158150 100644 --- a/md/UBERON/82/UBERON_0004982.md +++ b/md/UBERON/82/UBERON_0004982.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004982 * *Label* = mucosa of epiglottis - * *Definition* = A mucosa that is part of a epiglottis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a epiglottis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * epiglottis mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epiglottis mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epiglottis mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epiglottis organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of epiglottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of epiglottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of epiglottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * epiglottis mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epiglottis mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epiglottis mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epiglottis organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of epiglottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of epiglottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of epiglottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [epiglottis](../../UBERON/88/UBERON_0000388.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005082.md b/md/UBERON/82/UBERON_0005082.md index f3ea6196a5..19213d80ec 100644 --- a/md/UBERON/82/UBERON_0005082.md +++ b/md/UBERON/82/UBERON_0005082.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005082 * *Label* = tube lumen - * *Definition* = A hole in a tube[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060609] + * *Definition* = A hole in a tube[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060609 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [surrounded_by](../../RO/19/RO_0002219.md) some [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005282.md b/md/UBERON/82/UBERON_0005282.md index 62cd93095f..f74121442f 100644 --- a/md/UBERON/82/UBERON_0005282.md +++ b/md/UBERON/82/UBERON_0005282.md @@ -6,7 +6,7 @@ ## Synonyms - * brain ventricular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000005] + * brain ventricular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000005 ] ## Cross-references @@ -34,8 +34,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005382.md b/md/UBERON/82/UBERON_0005382.md index b9195a57b9..01a3165b02 100644 --- a/md/UBERON/82/UBERON_0005382.md +++ b/md/UBERON/82/UBERON_0005382.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005382 * *Label* = dorsal striatum - * *Definition* = Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010001] + * *Definition* = Dorsal components of the striatum comprising the caudate nucleus and the putamen, in species that have distinct nuclei; the caudoputamen in species which don't. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010001 ] ## Synonyms - * striatum dorsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:STRd] - * caudoputamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * corpus striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_striatum] - * dorsal basal ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004701] - * dorsal basal ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004701] - * striated body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_striatum] - * striatum dorsale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004701] + * striatum dorsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:STRd ] + * caudoputamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * corpus striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_striatum ] + * dorsal basal ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004701 ] + * dorsal basal ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004701 ] + * striated body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_striatum ] + * striatum dorsale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004701 ] ## Cross-references @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = It may also refer to both the basal ganglia and the internal capsule collectively. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = It may also refer to the putamen and caudate collectively. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The term dorsal striatum refers to a composite structure of the endbrain that is defined in the striatopallidal system by connectivity and neurochemical staining. It includes most of the striatum ( Heimer-1995 ). The boundary between this structure and the ventral striatum is indistinct in sections stained for Nissl substance. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005482.md b/md/UBERON/82/UBERON_0005482.md index 17275269a2..3d6243c518 100644 --- a/md/UBERON/82/UBERON_0005482.md +++ b/md/UBERON/82/UBERON_0005482.md @@ -6,9 +6,9 @@ ## Synonyms - * subdivision of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20358] - * thoracic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20358] - * thoracic subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20358] + * subdivision of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20358 ] + * thoracic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20358 ] + * thoracic subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20358 ] ## Cross-references @@ -29,9 +29,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:20358 * *[consider](../../er/oboInOwl#consider.md)* = SCTID:425803006 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005482 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/82/UBERON_0005582.md b/md/UBERON/82/UBERON_0005582.md index 1f3c529865..06cdf98d88 100644 --- a/md/UBERON/82/UBERON_0005582.md +++ b/md/UBERON/82/UBERON_0005582.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005582 * *Label* = rhombomere 6 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000889] - * floor plate rhombomere 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000889] - * floorplate r6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000889] + * floor plate r6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000889 ] + * floor plate rhombomere 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000889 ] + * floorplate r6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000889 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 6](../../UBERON/19/UBERON_0005519.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005682.md b/md/UBERON/82/UBERON_0005682.md index 2795f2f2c0..678f408b62 100644 --- a/md/UBERON/82/UBERON_0005682.md +++ b/md/UBERON/82/UBERON_0005682.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005682 * *Label* = right lung accessory lobe bronchiole - * *Definition* = A bronchiole that is part of a right lung accessory lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A bronchiole that is part of a right lung accessory lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bronchiole](../../UBERON/86/UBERON_0002186.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005882.md b/md/UBERON/82/UBERON_0005882.md index dfbfa14e32..fcd049758f 100644 --- a/md/UBERON/82/UBERON_0005882.md +++ b/md/UBERON/82/UBERON_0005882.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005882 * *Label* = neural tube alar plate - * *Definition* = the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009692[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_plate] + * *Definition* = the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009692, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_plate ] ## Synonyms - * alar plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1370] + * alar plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1370 ] * alar plate of neural tube - * alar lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_lamina] + * alar lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_lamina ] * dorsal part of neural tube - * lamina alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina dorsolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alar_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina dorsolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alar_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0005982.md b/md/UBERON/82/UBERON_0005982.md index 91c6554aa5..d4b9942338 100644 --- a/md/UBERON/82/UBERON_0005982.md +++ b/md/UBERON/82/UBERON_0005982.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005982 * *Label* = Bachmann's bundle - * *Definition* = the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010517[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bachmann's_bundle] + * *Definition* = the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010517, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bachmann's_bundle ] ## Synonyms - * anterior interatrial band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:gg] + * anterior interatrial band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:gg ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006082.md b/md/UBERON/82/UBERON_0006082.md index 858842a9d8..ce34cbac30 100644 --- a/md/UBERON/82/UBERON_0006082.md +++ b/md/UBERON/82/UBERON_0006082.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006082 * *Label* = fundus of urinary bladder - * *Definition* = The base or posterior surface of the urinary bladder contains the trigone of the bladder and the outlet where urine empties through the internal urethral orifice. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011785[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fundus_of_the_urinary_bladder#Fundus] + * *Definition* = The base or posterior surface of the urinary bladder contains the trigone of the bladder and the outlet where urine empties through the internal urethral orifice. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011785, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fundus_of_the_urinary_bladder#Fundus ] ## Synonyms - * base of urinary bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15908] - * fundus vesicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15908[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urinary bladder base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011785] - * urinary bladder fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15908] - * urinary bladder fundus region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001694] - * fundus of bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15908] + * base of urinary bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15908 ] + * fundus vesicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15908, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urinary bladder base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011785 ] + * urinary bladder fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15908 ] + * urinary bladder fundus region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001694 ] + * fundus of bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15908 ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:15908 * MA:0001694 * SCTID:362226002 - * UMLS:C0447584 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bladder_Fundus] + * UMLS:C0447584 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bladder_Fundus ] * VHOG:0001184 * Wikipedia:Fundus_of_the_urinary_bladder#Fundus * ncithesaurus:Bladder_Fundus @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006182.md b/md/UBERON/82/UBERON_0006182.md index 6154c9a32c..e6ce67ac61 100644 --- a/md/UBERON/82/UBERON_0006182.md +++ b/md/UBERON/82/UBERON_0006182.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006182 * *Label* = mesonephric glomerular mesangium - * *Definition* = The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061247] + * *Definition* = The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061247 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular mesangium](../../UBERON/20/UBERON_0002320.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006282.md b/md/UBERON/82/UBERON_0006282.md index 0f01ffbccc..74fbbb9877 100644 --- a/md/UBERON/82/UBERON_0006282.md +++ b/md/UBERON/82/UBERON_0006282.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006482.md b/md/UBERON/82/UBERON_0006482.md index b107b79e43..5cc8f8d208 100644 --- a/md/UBERON/82/UBERON_0006482.md +++ b/md/UBERON/82/UBERON_0006482.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006482 * *Label* = Brodmann (1909) area 45 - * *Definition* = Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] + * *Definition* = Part of the cytoarchitecturally defined frontal region of cerebral cortex. In the human, it occupies the triangular part of the inferior frontal gyrus (human) and, surrounding the anterior horizontal limb of the lateral sulcus (human), a portion of the orbital part of the inferior frontal gyrus (human). Bounded caudally by the anterior ascending limb of the lateral sulcus (human), it borders on the insula in the depth of the lateral sulcus. Cytoarchitectonically it is bounded caudally by the opercular area 44, rostrodorsally by the area 46 of Brodmann (human) and ventrally by the area 47 of Brodmann (human) (Brodmann-1909) (Adapted from Brain Info) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] ## Synonyms - * B09-45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] - * BA45 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] - * Brodmann area 45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68642] - * Brodmann area 45, triangular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] - * area 45 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68642] - * area 45 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] - * area triangularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1777] - * area triangularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_45[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triangular area 45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68642] - * B09-45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1777[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * BA45 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1777[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] + * BA45 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] + * Brodmann area 45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68642 ] + * Brodmann area 45, triangular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] + * area 45 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68642 ] + * area 45 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] + * area triangularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1777 ] + * area triangularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_45, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triangular area 45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68642 ] + * B09-45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1777, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * BA45 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1777, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:birnlex_1777 * NeuroNames:2403 * SCTID:384805001 - * UMLS:C1272511 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1777] + * UMLS:C1272511 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1777 ] * Wikipedia:Brodmann_area_45 ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Brodmann area 45 (BA45), is part of the frontal cortex in the human brain. Situated on the lateral surface, inferior to BA9 and adjacent to BA46. This area is also known as pars triangular (of the inferior frontal gyrus). In the human, it occupies the triangular part of inferior frontal gyrus (H) and, surrounding the anterior horizontal limb of lateral sulcus (H), a portion of the orbital part of inferior frontal gyrus (H). Bounded caudally by the anterior ascending limb of lateral sulcus (H), it borders on the insula in the depth of the lateral sulcus. In terms of cytoarchitecture, it is bounded caudally by the opercular area 44 (BA44), rostrodorsally by the middle frontal area 46 (BA46), and ventrally by the orbital area 47 (BA47) (Brodmann-1909)[Wikipedia:Brodmann_area_45]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006582.md b/md/UBERON/82/UBERON_0006582.md index ba4682f22c..e2ee3feb00 100644 --- a/md/UBERON/82/UBERON_0006582.md +++ b/md/UBERON/82/UBERON_0006582.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006582 * *Label* = statolith - * *Definition* = Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006682.md b/md/UBERON/82/UBERON_0006682.md index 3c14676a44..6ac2ac6c6f 100644 --- a/md/UBERON/82/UBERON_0006682.md +++ b/md/UBERON/82/UBERON_0006682.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0006782.md b/md/UBERON/82/UBERON_0006782.md index 8beacb36fa..936493d324 100644 --- a/md/UBERON/82/UBERON_0006782.md +++ b/md/UBERON/82/UBERON_0006782.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0007182.md b/md/UBERON/82/UBERON_0007182.md index 33df7ba214..48f867bb4d 100644 --- a/md/UBERON/82/UBERON_0007182.md +++ b/md/UBERON/82/UBERON_0007182.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007182 * *Label* = muscle layer of infundibulum of uterine tube - * *Definition* = A muscle layer that is part of a uterine tube infundibulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a uterine tube infundibulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle layer of infundibulum of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18336] - * muscle layer of infundibulum of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18336] - * muscularis of infundibulum of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18336] + * muscle layer of infundibulum of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18336 ] + * muscle layer of infundibulum of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18336 ] + * muscularis of infundibulum of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18336 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterine tube infundibulum](../../UBERON/84/UBERON_0003984.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0007282.md b/md/UBERON/82/UBERON_0007282.md index 70fa88e749..64ba391756 100644 --- a/md/UBERON/82/UBERON_0007282.md +++ b/md/UBERON/82/UBERON_0007282.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007282 * *Label* = presumptive segmental plate - * *Definition* = A presumptive structure that has_potential_to_develop_into a presomitic mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a presomitic mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [presomitic mesoderm](../../UBERON/59/UBERON_0003059.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0008582.md b/md/UBERON/82/UBERON_0008582.md index 6a7974b09a..22144ae511 100644 --- a/md/UBERON/82/UBERON_0008582.md +++ b/md/UBERON/82/UBERON_0008582.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008582 * *Label* = superior longitudinal muscle of tongue - * *Definition* = A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue] + * *Definition* = A muscle of the tongue that consists of a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue ] ## Synonyms - * musculus longitudinalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46693] - * longitudinalis linguae superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue] - * longitudinalis lingu superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue] - * musculus longitudinalis superior linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior lingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue] - * superior longitudinal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_longitudinal_muscle_of_tongue] + * musculus longitudinalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46693 ] + * longitudinalis linguae superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue ] + * longitudinalis lingu superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue ] + * musculus longitudinalis superior linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior lingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue ] + * superior longitudinal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_longitudinal_muscle_of_tongue ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0008882.md b/md/UBERON/82/UBERON_0008882.md index 830761c9bc..04b6af0a52 100644 --- a/md/UBERON/82/UBERON_0008882.md +++ b/md/UBERON/82/UBERON_0008882.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008882 * *Label* = spinal cord commissure - * *Definition* = The nerve fiber tracts that span the midline of the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009694] + * *Definition* = The nerve fiber tracts that span the midline of the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009694 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0008982.md b/md/UBERON/82/UBERON_0008982.md index a1996a6892..4a93f6b619 100644 --- a/md/UBERON/82/UBERON_0008982.md +++ b/md/UBERON/82/UBERON_0008982.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008982 * *Label* = fascia - * *Definition* = A dense regular connective tissue that that connects muscles together[WP, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fascia] + * *Definition* = A dense regular connective tissue that that connects muscles together[WP, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fascia ] ## Synonyms - * fascia cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:30318] + * fascia cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:30318 ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:30318 * MESH:A02.340 * SCTID:181772008 - * UMLS:C0015641 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fascia] + * UMLS:C0015641 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fascia ] * Wikipedia:Fascia * ncithesaurus:Fascia @@ -34,11 +34,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0009482.md b/md/UBERON/82/UBERON_0009482.md index 8d61f7f2ec..1349bf42a2 100644 --- a/md/UBERON/82/UBERON_0009482.md +++ b/md/UBERON/82/UBERON_0009482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009482 * *Label* = associated mesenchyme of foregut-midgut junction - * *Definition* = Mesenchyme that is part of a foregut-midgut junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a foregut-midgut junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut-midgut junction](../../UBERON/35/UBERON_0006235.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0009582.md b/md/UBERON/82/UBERON_0009582.md index 4088fea433..5821b69ac5 100644 --- a/md/UBERON/82/UBERON_0009582.md +++ b/md/UBERON/82/UBERON_0009582.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral wall spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000996] + * lateral wall spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000996 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0009882.md b/md/UBERON/82/UBERON_0009882.md index 8bf249b519..d85739cfd6 100644 --- a/md/UBERON/82/UBERON_0009882.md +++ b/md/UBERON/82/UBERON_0009882.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009882 * *Label* = anal column - * *Definition* = One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_columns] + * *Definition* = One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_columns ] ## Synonyms - * column of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15713] - * columnae anales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anal_columns[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * column of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15713 ] + * columnae anales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anal_columns, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15713 * SCTID:245444007 - * UMLS:C0227428 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Column] + * UMLS:C0227428 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Column ] * Wikipedia:Anal_columns * http://upload.wikimedia.org/wikipedia/commons/1/17/Gray1078.png * ncithesaurus:Anal_Column @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0010582.md b/md/UBERON/82/UBERON_0010582.md index 07baac38c5..0da1101758 100644 --- a/md/UBERON/82/UBERON_0010582.md +++ b/md/UBERON/82/UBERON_0010582.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010582 * *Label* = pedal digit 3 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 3 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 3 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 3 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3 mesenchyme](../../UBERON/97/UBERON_0005697.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0010682.md b/md/UBERON/82/UBERON_0010682.md index 3011ab77e7..5ed462a893 100644 --- a/md/UBERON/82/UBERON_0010682.md +++ b/md/UBERON/82/UBERON_0010682.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010682 * *Label* = pedal digit 3 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit 3 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit 3 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 3 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 3 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 3 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3 mesenchyme](../../UBERON/97/UBERON_0005697.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0010882.md b/md/UBERON/82/UBERON_0010882.md index b1b51b1ea3..4271a4ae11 100644 --- a/md/UBERON/82/UBERON_0010882.md +++ b/md/UBERON/82/UBERON_0010882.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010882 * *Label* = limb bone pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a limb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a limb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [limb bone](../../UBERON/28/UBERON_0002428.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0010982.md b/md/UBERON/82/UBERON_0010982.md index 63db7098c0..7b500601e1 100644 --- a/md/UBERON/82/UBERON_0010982.md +++ b/md/UBERON/82/UBERON_0010982.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0011282.md b/md/UBERON/82/UBERON_0011282.md index c3b3110c10..464aad537a 100644 --- a/md/UBERON/82/UBERON_0011282.md +++ b/md/UBERON/82/UBERON_0011282.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011282 * *Label* = nail of pedal digit 5 - * *Definition* = A nail that is part of a pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nail that is part of a pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * claw of digit 5 of hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18743] - * little toe nail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54356] - * nail of fifth toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54356] - * nail of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54356] - * nail plate of little toe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54356] + * claw of digit 5 of hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18743 ] + * little toe nail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54356 ] + * nail of fifth toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54356 ] + * nail of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54356 ] + * nail plate of little toe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54356 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nail](../../UBERON/05/UBERON_0001705.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0011582.md b/md/UBERON/82/UBERON_0011582.md index 07c21479e1..95ca446fbf 100644 --- a/md/UBERON/82/UBERON_0011582.md +++ b/md/UBERON/82/UBERON_0011582.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011582 * *Label* = paired limb/fin skeleton - * *Definition* = The collection of all skeletal elements in an individual limb or fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The collection of all skeletal elements in an individual limb or fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * limb/fin skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000301] + * limb/fin skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000301 ] * skeletal parts of limb/fin * skeleton of limb/fin @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [paired limb/fin](../../UBERON/08/UBERON_0004708.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal subdivision that is part of the paired limb/fin.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0011782.md b/md/UBERON/82/UBERON_0011782.md index 29fdb570cc..ddd0979c09 100644 --- a/md/UBERON/82/UBERON_0011782.md +++ b/md/UBERON/82/UBERON_0011782.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011782 * *Label* = feather follicle - * *Definition* = a small tubular invagination of the skin with a fleshy dermal papilla at the bottom from which the feather grows. The papilla is inserted in the opening at the end of the quill[TMD]. Forms by invagination of cylinder of epidermal tissue at base of feather bud. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/feather+follicle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = a small tubular invagination of the skin with a fleshy dermal papilla at the bottom from which the feather grows. The papilla is inserted in the opening at the end of the quill[TMD]. Forms by invagination of cylinder of epidermal tissue at base of feather bud. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/feather+follicle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] * *Comment* = The follicle consists of a series of tissue layers (from peripheral to central), including the dermis of the follicle, the epidermis of the follicle (outer epidermal layer), the follicle cavity or lumen (the space between epidermal layers), the follicle (epidermal) collar (or inner epidermal layer), and the dermal pulp (tissue at the center of the follicle). The proliferation of feather keratinocytes and most of the growth of the feather occurs in the follicle, or epidermal, collar (From: Prum 1999). ## Synonyms @@ -21,9 +21,9 @@ * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [feather](../../UBERON/22/UBERON_0000022.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [epidermis](../../UBERON/03/UBERON_0001003.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [dermis](../../UBERON/67/UBERON_0002067.md) * [develops from](../../RO/02/RO_0002202.md) some [feather follicle placode](../../UBERON/83/UBERON_0011783.md) ## Equivalencies @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0011982.md b/md/UBERON/82/UBERON_0011982.md index 598a8a710b..288cbc9462 100644 --- a/md/UBERON/82/UBERON_0011982.md +++ b/md/UBERON/82/UBERON_0011982.md @@ -8,9 +8,9 @@ ## Synonyms * fore digit VII - * fore limb digit 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * fore limb digit 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * seventh finger - * hand digit 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011982 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0012082.md b/md/UBERON/82/UBERON_0012082.md index 263303bbec..bbec333c5e 100644 --- a/md/UBERON/82/UBERON_0012082.md +++ b/md/UBERON/82/UBERON_0012082.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012082 * *Label* = bronchial lumen - * *Definition* = An anatomical cavity that is part of a bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchial lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62646] - * lumen of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62646] + * bronchial lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62646 ] + * lumen of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62646 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0012282.md b/md/UBERON/82/UBERON_0012282.md index 38f81c59a9..aaef98828f 100644 --- a/md/UBERON/82/UBERON_0012282.md +++ b/md/UBERON/82/UBERON_0012282.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012282 * *Label* = mammary fat pad - * *Definition* = encapsulated adipose tissue associated with the mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:csmith] + * *Definition* = encapsulated adipose tissue associated with the mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:csmith ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012282 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0012482.md b/md/UBERON/82/UBERON_0012482.md index 517b630c24..baec8b1809 100644 --- a/md/UBERON/82/UBERON_0012482.md +++ b/md/UBERON/82/UBERON_0012482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012482 * *Label* = submucosa of cloaca - * *Definition* = A submucosa that is part of a cloaca [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A submucosa that is part of a cloaca [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0013182.md b/md/UBERON/82/UBERON_0013182.md index cbf61df871..310a816a06 100644 --- a/md/UBERON/82/UBERON_0013182.md +++ b/md/UBERON/82/UBERON_0013182.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013182 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0013482.md b/md/UBERON/82/UBERON_0013482.md index 3d8ed7d9f6..9c5e78623d 100644 --- a/md/UBERON/82/UBERON_0013482.md +++ b/md/UBERON/82/UBERON_0013482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013482 * *Label* = crypt of Lieberkuhn of duodenum - * *Definition* = An intestinal crypt that is located in the duodenum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intestinal crypt that is located in the duodenum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0013582.md b/md/UBERON/82/UBERON_0013582.md index e75dd8e609..99c4b79164 100644 --- a/md/UBERON/82/UBERON_0013582.md +++ b/md/UBERON/82/UBERON_0013582.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013582 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0013682.md b/md/UBERON/82/UBERON_0013682.md index e9e2316f10..ad2f22a2d0 100644 --- a/md/UBERON/82/UBERON_0013682.md +++ b/md/UBERON/82/UBERON_0013682.md @@ -6,7 +6,7 @@ ## Synonyms - * peripheral retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004458] + * peripheral retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004458 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical region comprising the peripheral part of the retina[XAO:0004458]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0014382.md b/md/UBERON/82/UBERON_0014382.md index 33b18e2b70..b4234ee886 100644 --- a/md/UBERON/82/UBERON_0014382.md +++ b/md/UBERON/82/UBERON_0014382.md @@ -20,15 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collection of hairs](../../UBERON/64/UBERON_0010164.md) and [part_of](../../BFO/50/BFO_0000050.md) some [craniocervical region](../../UBERON/11/UBERON_0007811.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014382 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0014482.md b/md/UBERON/82/UBERON_0014482.md index 74652f535e..4bf4fef95f 100644 --- a/md/UBERON/82/UBERON_0014482.md +++ b/md/UBERON/82/UBERON_0014482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014482 * *Label* = ischial callosity - * *Definition* = An area of hardened, leathery skin on either side of the base of the tail on the rump. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://pin.primate.wisc.edu/factsheets/glossary] + * *Definition* = An area of hardened, leathery skin on either side of the base of the tail on the rump. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://pin.primate.wisc.edu/factsheets/glossary ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014482 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0014682.md b/md/UBERON/82/UBERON_0014682.md index 4afa243ff0..1c7d908249 100644 --- a/md/UBERON/82/UBERON_0014682.md +++ b/md/UBERON/82/UBERON_0014682.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014682 * *Label* = tooth whorl - * *Definition* = A spirally arranged cluster of teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A spirally arranged cluster of teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -31,8 +31,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7863 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8287 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014682 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0014782.md b/md/UBERON/82/UBERON_0014782.md index afbd90d055..3d7ca3b1ac 100644 --- a/md/UBERON/82/UBERON_0014782.md +++ b/md/UBERON/82/UBERON_0014782.md @@ -7,7 +7,7 @@ ## Synonyms - * allantois [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000113] + * allantois [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000113 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014782 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0014882.md b/md/UBERON/82/UBERON_0014882.md index 8d9092cb9a..c6af19270f 100644 --- a/md/UBERON/82/UBERON_0014882.md +++ b/md/UBERON/82/UBERON_0014882.md @@ -6,11 +6,11 @@ ## Synonyms - * distal end of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37621] - * distal end of distal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37621] - * distal epiphysis of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37621] - * head of distal phalanx of index finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37621] - * head of distal phalanx of second finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37621] + * distal end of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37621 ] + * distal end of distal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37621 ] + * distal epiphysis of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37621 ] + * head of distal phalanx of index finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37621 ] + * head of distal phalanx of second finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37621 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 2](../../UBERON/11/UBERON_0004311.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014882 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_0015082.md b/md/UBERON/82/UBERON_0015082.md index d279b9453d..63dc9421ec 100644 --- a/md/UBERON/82/UBERON_0015082.md +++ b/md/UBERON/82/UBERON_0015082.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [proximal tarsal bone endochondral element](../../UBERON/81/UBERON_0015081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015082 + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2000182.md b/md/UBERON/82/UBERON_2000182.md index 8a4f117d73..57ac44e798 100644 --- a/md/UBERON/82/UBERON_2000182.md +++ b/md/UBERON/82/UBERON_2000182.md @@ -6,7 +6,7 @@ ## Synonyms - * central posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000182] + * central posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000182 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2000482.md b/md/UBERON/82/UBERON_2000482.md index 3645cfe5d9..078aea9ef0 100644 --- a/md/UBERON/82/UBERON_2000482.md +++ b/md/UBERON/82/UBERON_2000482.md @@ -6,7 +6,7 @@ ## Synonyms - * posterior tuberal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000482] + * posterior tuberal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000482 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2000582.md b/md/UBERON/82/UBERON_2000582.md index f61bce891a..ff995bb00a 100644 --- a/md/UBERON/82/UBERON_2000582.md +++ b/md/UBERON/82/UBERON_2000582.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2000982.md b/md/UBERON/82/UBERON_2000982.md index ef573261b0..5b79b32616 100644 --- a/md/UBERON/82/UBERON_2000982.md +++ b/md/UBERON/82/UBERON_2000982.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000982 * *Label* = somite 6 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 6 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001382.md b/md/UBERON/82/UBERON_2001382.md index a21b1da2ad..c8ee8ea9d0 100644 --- a/md/UBERON/82/UBERON_2001382.md +++ b/md/UBERON/82/UBERON_2001382.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001382 * *Label* = epibranchial bone uncinate process - * *Definition* = Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001482.md b/md/UBERON/82/UBERON_2001482.md index 5684599381..8ae97f97b6 100644 --- a/md/UBERON/82/UBERON_2001482.md +++ b/md/UBERON/82/UBERON_2001482.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001482 * *Label* = middle lateral line nerve - * *Definition* = Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001582.md b/md/UBERON/82/UBERON_2001582.md index 7c100d1d56..07e5ed64e3 100644 --- a/md/UBERON/82/UBERON_2001582.md +++ b/md/UBERON/82/UBERON_2001582.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001782.md b/md/UBERON/82/UBERON_2001782.md index 7669763f08..c7022aa8b9 100644 --- a/md/UBERON/82/UBERON_2001782.md +++ b/md/UBERON/82/UBERON_2001782.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001882.md b/md/UBERON/82/UBERON_2001882.md index 16c9e6cd78..f08e967236 100644 --- a/md/UBERON/82/UBERON_2001882.md +++ b/md/UBERON/82/UBERON_2001882.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2001982.md b/md/UBERON/82/UBERON_2001982.md index b320ed8cfc..5efd551166 100644 --- a/md/UBERON/82/UBERON_2001982.md +++ b/md/UBERON/82/UBERON_2001982.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001982 * *Label* = vertebral element 8 - * *Definition* = Vertebra that is posteriorly adjacent to vertebra 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Vertebra that is posteriorly adjacent to vertebra 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#vertebra_number](../../core#vertebra/er/core#vertebra_number.md)* = 8 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2002082.md b/md/UBERON/82/UBERON_2002082.md index 662342f3fc..f34782e57e 100644 --- a/md/UBERON/82/UBERON_2002082.md +++ b/md/UBERON/82/UBERON_2002082.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002082 * *Label* = basal fulcrum - * *Definition* = Fulcrum that is large, laterally expanded, paired or unpaired, scale-like, and that precedes the base of a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Fulcrum that is large, laterally expanded, paired or unpaired, scale-like, and that precedes the base of a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Basal fulcra may precede the median fins or both of the paired and median fins. Basal fulcra may be lanceolate, leaf-like or arrow-like in shape. The series of basal fulcra may be formed by unpaired plus paired elements depending on the fish group. Most teleosts lack basal fulcra. For additional information on basal fulcra see Arratia (2008, 2009). ## Synonyms - * basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002082[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002082, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2002282.md b/md/UBERON/82/UBERON_2002282.md index f0b94c5cd9..98012314d1 100644 --- a/md/UBERON/82/UBERON_2002282.md +++ b/md/UBERON/82/UBERON_2002282.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002282 * *Label* = preopercle-opercle joint - * *Definition* = Joint that articulates the preopercle and opercle. Preopercle-opercle joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates the preopercle and opercle. Preopercle-opercle joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [opercle](../../UBERON/50/UBERON_2000250.md) and [core#connects](../../ts/core#connects.md) some [preopercle](../../UBERON/64/UBERON_2000264.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2005082.md b/md/UBERON/82/UBERON_2005082.md index 23c1d3053f..6c5845f0e4 100644 --- a/md/UBERON/82/UBERON_2005082.md +++ b/md/UBERON/82/UBERON_2005082.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2005182.md b/md/UBERON/82/UBERON_2005182.md index 51be8c82f2..2a347791d9 100644 --- a/md/UBERON/82/UBERON_2005182.md +++ b/md/UBERON/82/UBERON_2005182.md @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/82/UBERON_2005382.md b/md/UBERON/82/UBERON_2005382.md index caf0f43ee2..27d2ea223b 100644 --- a/md/UBERON/82/UBERON_2005382.md +++ b/md/UBERON/82/UBERON_2005382.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005382 * *Label* = dorsal fin proximal radial bone 5 - * *Definition* = dorsal fin proximal radial 5 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 5 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 5](../../UBERON/82/UBERON_2105382.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2105382.md b/md/UBERON/82/UBERON_2105382.md index 2d473ea384..8cd6663896 100644 --- a/md/UBERON/82/UBERON_2105382.md +++ b/md/UBERON/82/UBERON_2105382.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 5](../../UBERON/68/UBERON_2005368.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_2205382.md b/md/UBERON/82/UBERON_2205382.md index e7c6842537..231ea6429d 100644 --- a/md/UBERON/82/UBERON_2205382.md +++ b/md/UBERON/82/UBERON_2205382.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205382 * *Label* = dorsal fin proximal radial cartilage 5 - * *Definition* = dorsal fin proximal radial 5 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 5 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 5](../../UBERON/82/UBERON_2105382.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3000182.md b/md/UBERON/82/UBERON_3000182.md index 9351ce35b5..dd68854927 100644 --- a/md/UBERON/82/UBERON_3000182.md +++ b/md/UBERON/82/UBERON_3000182.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3000282.md b/md/UBERON/82/UBERON_3000282.md index 69737b1381..040a7238ba 100644 --- a/md/UBERON/82/UBERON_3000282.md +++ b/md/UBERON/82/UBERON_3000282.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000282 * *Label* = margo orbitalis of pterygoid - * *Definition* = Margin that connects the anterior and medial rami of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Margin that connects the anterior and medial rami of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3000582.md b/md/UBERON/82/UBERON_3000582.md index e23b72e591..578023064e 100644 --- a/md/UBERON/82/UBERON_3000582.md +++ b/md/UBERON/82/UBERON_3000582.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3000882.md b/md/UBERON/82/UBERON_3000882.md index f4d5835f68..bd1c7f46fb 100644 --- a/md/UBERON/82/UBERON_3000882.md +++ b/md/UBERON/82/UBERON_3000882.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000882 * *Label* = interilial region - * *Definition* = Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3000982.md b/md/UBERON/82/UBERON_3000982.md index e4b59ff6cb..d9d2fc8040 100644 --- a/md/UBERON/82/UBERON_3000982.md +++ b/md/UBERON/82/UBERON_3000982.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000982 * *Label* = tail external integument structure - * *Definition* = Dermal, epidermal, glandular and pigment structures of the tail integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Dermal, epidermal, glandular and pigment structures of the tail integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3010082.md b/md/UBERON/82/UBERON_3010082.md index df23c0cc2e..5fe5586596 100644 --- a/md/UBERON/82/UBERON_3010082.md +++ b/md/UBERON/82/UBERON_3010082.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010082 * *Label* = M. pulmonum proprius - * *Definition* = Originates along the connective tissue covering the dorsal surface of the lung and inserts on the dorsal surface of the femur. Muscle found only in Pipa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates along the connective tissue covering the dorsal surface of the lung and inserts on the dorsal surface of the femur. Muscle found only in Pipa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3010182.md b/md/UBERON/82/UBERON_3010182.md index 6e54235710..33cd58b899 100644 --- a/md/UBERON/82/UBERON_3010182.md +++ b/md/UBERON/82/UBERON_3010182.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_3010682.md b/md/UBERON/82/UBERON_3010682.md index a715b17c86..94884b229b 100644 --- a/md/UBERON/82/UBERON_3010682.md +++ b/md/UBERON/82/UBERON_3010682.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_4000182.md b/md/UBERON/82/UBERON_4000182.md index bb6b7cab63..6df0a7f56c 100644 --- a/md/UBERON/82/UBERON_4000182.md +++ b/md/UBERON/82/UBERON_4000182.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000182 * *Label* = suprabranchial fin - * *Definition* = Paired fin that is a bilaterally paired anterior outgrowth located high on the side of the animal, not far behind the orbit, with the posterior extremity corresponding with the expected posterior end of the branchial region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000172] + * *Definition* = Paired fin that is a bilaterally paired anterior outgrowth located high on the side of the animal, not far behind the orbit, with the posterior extremity corresponding with the expected posterior end of the branchial region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000172 ] * *Comment* = Suprabranchial fins are anterior outgrowths from the cephalothorax of thelodonts. Typically scale covered. They do not appear to contain skeletal tissues or elements. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_4200182.md b/md/UBERON/82/UBERON_4200182.md index 11bd69142d..2d7493e580 100644 --- a/md/UBERON/82/UBERON_4200182.md +++ b/md/UBERON/82/UBERON_4200182.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/82/UBERON_4300082.md b/md/UBERON/82/UBERON_4300082.md new file mode 100644 index 0000000000..e4716ff48f --- /dev/null +++ b/md/UBERON/82/UBERON_4300082.md @@ -0,0 +1,34 @@ + +## Class : metapterygium element + + * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300082 + * *Label* = metapterygium element + +## Synonyms + + +## Cross-references + + +## Subsets + + +## Superclasses + + * [pectoral fin proximal radial element](../../UBERON/87/UBERON_2101587.md) + +## Equivalencies + + +## Other Logical Axioms + + +## Other Annotations + + * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD + +## Usage + + +## External Comments + diff --git a/md/UBERON/83/UBERON_0000083.md b/md/UBERON/83/UBERON_0000083.md index 7c6182b8ed..ea6e758711 100644 --- a/md/UBERON/83/UBERON_0000083.md +++ b/md/UBERON/83/UBERON_0000083.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000083 * *Label* = mesonephric tubule - * *Definition* = A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephric_tubules] + * *Definition* = A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephric_tubules ] * *Comment* = TODO check ## Synonyms - * renal tubules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000500[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * tubuli mesonephrici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesonephric_tubules[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * renal tubules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000500, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * tubuli mesonephrici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesonephric_tubules, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial tube](../../UBERON/14/UBERON_0003914.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the renal tubules composing the mesonephros. In mammals they function as excretory structures during the early embryonic development but are later incorporated into the reproductive system. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As the pronephros regresses, the archinephric duct induces the sequential differentiation of tubules in the more caudal parts of the nephric ridge. (...) Tubules that differentiate in the middle part of the nephric ridge form a kidney called the mesonephros. This kidney functions in the embryos and larvae of all vertebrates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0000383.md b/md/UBERON/83/UBERON_0000383.md index 349de891cb..80c5b40edc 100644 --- a/md/UBERON/83/UBERON_0000383.md +++ b/md/UBERON/83/UBERON_0000383.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000383 * *Label* = musculature of body - * *Definition* = Anatomical system that consists of all the muscles of the body[VSAO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000033] + * *Definition* = Anatomical system that consists of all the muscles of the body[VSAO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000033 ] * *Comment* = AO notes: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA ## Synonyms * muscle system * muscle system of body - * muscular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72954] - * musculature system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000088] - * set of all muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72954] - * set of muscles of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72954] - * vertebrate muscular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001369] - * muskelsystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001485] + * muscular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72954 ] + * musculature system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000088 ] + * set of all muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72954 ] + * set of muscles of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72954 ] + * vertebrate muscular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001369 ] + * muskelsystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001485 ] ## Cross-references @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical system that consists of the muscles of the body.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0000483.md b/md/UBERON/83/UBERON_0000483.md index 7cf94251ac..f73c9d214b 100644 --- a/md/UBERON/83/UBERON_0000483.md +++ b/md/UBERON/83/UBERON_0000483.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000483 * *Label* = epithelium - * *Definition* = Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epithelium] + * *Definition* = Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epithelium ] ## Synonyms * epithelial tissue - * portion of epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9639] + * portion of epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9639 ] ## Cross-references @@ -28,7 +28,7 @@ * MESH:A10.272 * SCTID:31610004 * TAO:0001486 - * UMLS:C0014609 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epithelium] + * UMLS:C0014609 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epithelium ] * VHOG:0000387 * Wikipedia:Epithelium * XAO:0003045 @@ -51,8 +51,8 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectUnionOf( ) + * [cell layer](../../UBERON/19/UBERON_0000119.md) and [has_part](../../BFO/51/BFO_0000051.md) some [epithelial cell](../../CL/66/CL_0000066.md) + * [multilaminar epithelium](../../UBERON/86/UBERON_0000486.md)or[unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The two basic types of metazoan tissue are epithelial and connective. The simplest metazoans, and developmental stages of many primitive invertebrates, consist solely of these two layers. Thus, epithelial and connective tissues may be the primary (original) tissues of metazoans, and both are important in the functional organization of animals.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epithelial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0000983.md b/md/UBERON/83/UBERON_0000983.md index 6baa9a33c9..2e70015ba1 100644 --- a/md/UBERON/83/UBERON_0000983.md +++ b/md/UBERON/83/UBERON_0000983.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000983 * *Label* = metatarsus region - * *Definition* = A metapodium region that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A metapodium region that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton ## Synonyms - * hind metapodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000221[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:th[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wiktionary.org/wiki/metapodial] - * metatarsal part of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24997] - * metatarsal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24997] - * regio metatarsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24997[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hindlimb cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * hindlimb equine cannon region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * metatarsus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000049] + * hind metapodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000221, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:th, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wiktionary.org/wiki/metapodial ] + * metatarsal part of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24997 ] + * metatarsal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24997 ] + * regio metatarsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24997, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hindlimb cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * hindlimb equine cannon region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * metatarsus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000049 ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [metapodium region](../../UBERON/77/UBERON_0009877.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001083.md b/md/UBERON/83/UBERON_0001083.md index dcff35a6b0..5a90b1f729 100644 --- a/md/UBERON/83/UBERON_0001083.md +++ b/md/UBERON/83/UBERON_0001083.md @@ -3,54 +3,54 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001083 * *Label* = myocardium of ventricle - * *Definition* = Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cardiac muscle of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac muscle of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart muscle of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart myocardium of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of heart of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * myocardium of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardiac muscle of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac muscle of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart muscle of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart myocardium of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of heart of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * myocardium of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ventricle myocardium - * ventricle of heart cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart muscle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ventricle of heart cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart muscle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ventricular myocardium - * ventricle cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000604] + * ventricle cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000604 ] ## Cross-references @@ -76,7 +76,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [myocardium](../../UBERON/49/UBERON_0002349.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms @@ -86,8 +86,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = As noted, the hearts of birds and mammals have four chambers that arises from the two chambers (atrium and ventricle) of the fish heart.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001183.md b/md/UBERON/83/UBERON_0001183.md index d906f1cfd6..edafbad0e2 100644 --- a/md/UBERON/83/UBERON_0001183.md +++ b/md/UBERON/83/UBERON_0001183.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001183 * *Label* = inferior mesenteric artery - * *Definition* = In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_artery] + * *Definition* = In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_artery ] ## Synonyms * inferior mesenteric arterial tree - * IMA [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * arteria mesenterica inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002302] - * arteria mesenterica inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_mesenteric_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * IMA [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * arteria mesenterica inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002302 ] + * arteria mesenterica inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_mesenteric_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A07.231.114.565.510 * OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA * SCTID:181341006 - * UMLS:C0162860 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Mesenteric_Artery] + * UMLS:C0162860 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Mesenteric_Artery ] * VHOG:0001116 * Wikipedia:Inferior_mesenteric_artery * galen:InferiorMesentericArtery @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001183 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001283.md b/md/UBERON/83/UBERON_0001283.md index 6412905621..eab7ee16aa 100644 --- a/md/UBERON/83/UBERON_0001283.md +++ b/md/UBERON/83/UBERON_0001283.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001283 * *Label* = bile canaliculus - * *Definition* = Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002841[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bile_canaliculus] + * *Definition* = Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002841, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bile_canaliculus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * bile canaliculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bile_canaliculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * bile capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002841] - * biliary canaliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002841] + * bile canaliculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bile_canaliculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * bile capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002841 ] + * biliary canaliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002841 ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A03.159.183.158.125 * SCTID:270023005 * TAO:0005163 - * UMLS:C0005393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bile_Canaliculus] + * UMLS:C0005393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bile_Canaliculus ] * Wikipedia:Bile_canaliculus * ZFA:0005163 * http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001383.md b/md/UBERON/83/UBERON_0001383.md index c5ccdb5f21..ae7eab74ff 100644 --- a/md/UBERON/83/UBERON_0001383.md +++ b/md/UBERON/83/UBERON_0001383.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001383 * *Label* = muscle of leg - * *Definition* = A muscle that is part of the region of the hindlimb between the pelvis and ankle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Leg_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A muscle that is part of the region of the hindlimb between the pelvis and ankle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Leg_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Terminology notes: see notes on UBERON:0000978 for possible confusion over the term 'leg'. ## Synonyms * leg muscle - * leg muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * leg skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * leg skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of hindlimb zeugopod or stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscle of thigh or crus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscle of upper or lower hindlimb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * leg muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * leg skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * leg skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of hindlimb zeugopod or stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscle of thigh or crus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscle of upper or lower hindlimb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * muscle of upper/lower leg - * muscle organ of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle of leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * muscle organ of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle of leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003270 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001483.md b/md/UBERON/83/UBERON_0001483.md index 56c105597f..c311e9de06 100644 --- a/md/UBERON/83/UBERON_0001483.md +++ b/md/UBERON/83/UBERON_0001483.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001483 * *Label* = skin of shoulder - * *Definition* = A zone of skin that is part of a shoulder region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A zone of skin that is part of a shoulder region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note in MA this is a subclass of forelimb skin, but this violates part-disjointness in Uberon ## Synonyms * shoulder skin - * shoulder zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of shoulder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * shoulder zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of shoulder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [shoulder](../../UBERON/67/UBERON_0001467.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001583.md b/md/UBERON/83/UBERON_0001583.md index 1979dd34f7..fd21613031 100644 --- a/md/UBERON/83/UBERON_0001583.md +++ b/md/UBERON/83/UBERON_0001583.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001583 * *Label* = extrinsic auricular muscle - * *Definition* = auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auriculares_muscles[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.daviddarling.info/encyclopedia/A/auricle.html] + * *Definition* = auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auriculares_muscles, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.daviddarling.info/encyclopedia/A/auricle.html ] * *Comment* = Note the Wikipedia topic refers to the extrinsic auricular muscles ## Synonyms - * musculi auriculares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auriculares_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculi auriculares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auriculares_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001683.md b/md/UBERON/83/UBERON_0001683.md index 1446db149e..8ba8aa2c67 100644 --- a/md/UBERON/83/UBERON_0001683.md +++ b/md/UBERON/83/UBERON_0001683.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001683 * *Label* = jugal bone - * *Definition* = The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Jugal_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone] + * *Definition* = The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Jugal_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone ] * *Comment* = Taxon notes: vHOG says is homologous to infraorbital 3. ## Synonyms * cheek bone - * malar bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52747] + * malar bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52747 ] * orbital bone - * os zygomaticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52747[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * zygomatic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001497] - * jugal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone] - * jugal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:225[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone] - * jugale [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * os zygomaticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os zygomaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone] - * zygoma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:225] - * zygoma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomatic_bone] + * os zygomaticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52747, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * zygomatic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001497 ] + * jugal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone ] + * jugal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:225, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone ] + * jugale [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * os zygomaticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * os zygomaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone ] + * zygoma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:225 ] + * zygoma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomatic_bone ] * zygomatic ## Cross-references @@ -46,7 +46,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [cheek](../../UBERON/67/UBERON_0001567.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dermatocranium](../../UBERON/13/UBERON_0003113.md) * [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [orbital region](../../UBERON/97/UBERON_0001697.md) * [in_lateral_side_of](../../BSPO/26/BSPO_0000126.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) ## Equivalencies @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified][Wikipedia:Zygomatic_bone]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) and the infraorbital bone 3 of advanced actinopterygians (is homologous) with the jugal bone of sarcopterygians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001783.md b/md/UBERON/83/UBERON_0001783.md index dc68c6c650..ba61a694ca 100644 --- a/md/UBERON/83/UBERON_0001783.md +++ b/md/UBERON/83/UBERON_0001783.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001783 * *Label* = optic disc - * *Definition* = The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] + * *Definition* = The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] ## Synonyms - * optic disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A08.800.800.120.680.660] - * optic disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] - * optic nerve disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] - * optic nerve head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] - * optic papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] - * physiologic blind spot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] - * physiologic blind spot of mariotte [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_disc] + * optic disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A08.800.800.120.680.660 ] + * optic disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] + * optic nerve disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] + * optic nerve head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] + * optic papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] + * physiologic blind spot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] + * physiologic blind spot of mariotte [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_disc ] ## Cross-references @@ -27,7 +27,7 @@ * MA:0000278 * MESH:A08.800.800.120.680.660 * SCTID:362518006 - * UMLS:C0029127 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Disc] + * UMLS:C0029127 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Disc ] * VHOG:0000551 * Wikipedia:Optic_disc * http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The small blind spot on the surface of the retina. It is the point where the fibers of the retina leave the eye and become part of the optic nerve. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001883.md b/md/UBERON/83/UBERON_0001883.md index d9ed4a8461..804c482b61 100644 --- a/md/UBERON/83/UBERON_0001883.md +++ b/md/UBERON/83/UBERON_0001883.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001883 * *Label* = olfactory tubercle - * *Definition* = Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005037] + * *Definition* = Region in the ventral telencephalon, prominent in rodents, but present in all mammals, consisting of a laminated cortical part and the cap/hilus region. It is traditionally viewed as part of the olfactory cortex but recognized by some as having a striatal character. According to many authors, the structure of the OT transitions from cortical like to striatal like along the lateral medial axis. (Maryann Martone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005037 ] * *Comment* = AO notes: NIF has separate classes for exact syns in FMA ## Synonyms - * anterior perforated area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61891] - * anterior perforated space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61891] - * anterior perforated substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61891] - * olfactory area (Mai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61891] - * tuberculum olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61891[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area olfactoria (Mai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia parolfactoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * olfactory area (Carpenter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282] - * olfactory tubercle (Ganser) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282] - * rostral perforated substance [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282] - * substantia perforata anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_perforated_substance[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuber olfactorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:282[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior perforated area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61891 ] + * anterior perforated space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61891 ] + * anterior perforated substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61891 ] + * olfactory area (Mai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61891 ] + * tuberculum olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61891, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area olfactoria (Mai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia parolfactoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * olfactory area (Carpenter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282 ] + * olfactory tubercle (Ganser) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282 ] + * rostral perforated substance [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282 ] + * substantia perforata anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_perforated_substance, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuber olfactorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:282, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,9 +37,9 @@ * MA:0000976 * NIF_GrossAnatomy:birnlex_1096 * NIF_GrossAnatomy:nlx_anat_1005037 - * NeuroNames:282 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1096] + * NeuroNames:282 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1096 ] * SCTID:369108006 - * UMLS:C0162436 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1096] + * UMLS:C0162436 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1096 ] * VHOG:0001625 * Wikipedia:Anterior_perforated_substance * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png @@ -69,8 +69,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly[FMA:61891, Wikipedia:Anterior_perforated_substance]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a multi-sensory processing center in the olfactory cortex that plays a role in reward behaviors. The OT is a composite structure that receives direct input from the olfactory bulb and contains the morphological and histochemical characteristics of the ventral pallidum and the striatum of the forebrain (Heimer & Wilson 1975)[Wikipedia:Anterior_perforated_substance]. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0001983.md b/md/UBERON/83/UBERON_0001983.md index 06e580e762..03066b1bc7 100644 --- a/md/UBERON/83/UBERON_0001983.md +++ b/md/UBERON/83/UBERON_0001983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001983 * *Label* = crypt of Lieberkuhn - * *Definition* = A tubular gland found in the epithelial lining of the intestine and colon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intestinal_crypt] + * *Definition* = A tubular gland found in the epithelial lining of the intestine and colon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intestinal_crypt ] * *Comment* = Taxon notes: Most fish lack intestinal glands that extend into the mucosa, Gadidae (Jacobshagen 1937) and Macrouridae (Geisterdoerfer 1973( have glands at the base of surface folds throughout intestine - these have been called crypts, but cell types are the same as for surface epithelium. Crypts have been described in salamander midguts (Reeder 1964) some reptiles (Luppa 1977) and some birds (Ziswiler and Farner 1972). Reptile crypts are less developed than birds and mammals, with epithelium similar to the surface. Avian crypts vary from those with absorprive and goblet cells to those that have cells with basophilic granules[ISBN:9780521617147] ## Synonyms @@ -11,22 +11,22 @@ * Lieberkuhn crypt * Lieberkuhn gland * Lieberkuhn's gland - * Lieberkuhn's glands [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * Lieberkuhn's glands [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * crypt of Lieberkhn * crypt of lieberkuhn - * crypts of Lieberkhn [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * crypts of Lieberkhn [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * follicles of lieberkuhn * intestinal crypt - * intestinal crypts [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * intestinal crypts [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * lieberkuhn crypt - * intestinal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Crypts_of_Lieberkuhn] + * intestinal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Crypts_of_Lieberkuhn ] ## Cross-references * FMA:63621 * MA:0001535 * SCTID:118652008 - * UMLS:C1621887 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Crypts_of_the_Lieberkuhn] + * UMLS:C1621887 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Crypts_of_the_Lieberkuhn ] * Wikipedia:Intestinal_crypt * http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In histology, an intestinal crypt, also crypt of LieberkC ObjectSomeValuesFrom( )) + * [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus](../../UBERON/45/UBERON_0001945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0002683.md b/md/UBERON/83/UBERON_0002683.md index 28bbc0ba34..f49592fa4d 100644 --- a/md/UBERON/83/UBERON_0002683.md +++ b/md/UBERON/83/UBERON_0002683.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002683 * *Label* = rhinal sulcus - * *Definition* = In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhinal_sulcus] + * *Definition* = In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhinal_sulcus ] ## Synonyms - * fissura rhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1368] - * rhinal fissuer (turner, rezius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1368] - * rhinal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83746] - * sulcus rhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1368] - * rhs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1368[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fissura rhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhinal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rhinal fissure (Turner, Rezius) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:41] - * sulcus rhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhinal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fissura rhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1368 ] + * rhinal fissuer (turner, rezius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1368 ] + * rhinal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83746 ] + * sulcus rhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1368 ] + * rhs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1368, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fissura rhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhinal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rhinal fissure (Turner, Rezius) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:41 ] + * sulcus rhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhinal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,9 +23,9 @@ * BM:Tel-Cx-RS * FMA:83746 * NIF_GrossAnatomy:birnlex_1368 - * NeuroNames:41 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1368] + * NeuroNames:41 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1368 ] * SCTID:279357002 - * UMLS:C0228254 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1368] + * UMLS:C0228254 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1368 ] * Wikipedia:Rhinal_sulcus * http://upload.wikimedia.org/wikipedia/commons/c/ce/Gehirn,_basal_-_beschriftet_lat.svg @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0002783.md b/md/UBERON/83/UBERON_0002783.md index 5a30c08371..6677278a9b 100644 --- a/md/UBERON/83/UBERON_0002783.md +++ b/md/UBERON/83/UBERON_0002783.md @@ -6,16 +6,16 @@ ## Synonyms - * central tegmental tract of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:601] - * tractus tegmentalis centralis (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:601[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central tegmental tract of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:601 ] + * tractus tegmentalis centralis (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:601, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ctgp * FMA:72494 * NIF_GrossAnatomy:birnlex_1683 - * NeuroNames:601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1683] - * UMLS:C0228443 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1683] + * NeuroNames:601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1683 ] + * UMLS:C0228443 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1683 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0002883.md b/md/UBERON/83/UBERON_0002883.md index 2c23e5a5d5..aeae31caa5 100644 --- a/md/UBERON/83/UBERON_0002883.md +++ b/md/UBERON/83/UBERON_0002883.md @@ -6,15 +6,15 @@ ## Synonyms - * central nucleus of amygda [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2682] - * central nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74047] - * amygdala central nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002686] - * central amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:243] - * central nucleus amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:243] - * central nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CEA] - * nucleus amygdalae centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002686] - * nucleus amygdaloideus centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:243[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus centralis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:243[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central nucleus of amygda [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2682 ] + * central nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74047 ] + * amygdala central nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002686 ] + * central amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:243 ] + * central nucleus amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:243 ] + * central nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CEA ] + * nucleus amygdalae centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002686 ] + * nucleus amygdaloideus centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:243, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus centralis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:243, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,8 @@ * FMA:74047 * MA:0002923 * NIF_GrossAnatomy:birnlex_2682 - * NeuroNames:243 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2682] - * UMLS:C0175219 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2682] + * NeuroNames:243 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2682 ] + * UMLS:C0175219 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2682 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0002983.md b/md/UBERON/83/UBERON_0002983.md index 801135b57e..40022c2ce6 100644 --- a/md/UBERON/83/UBERON_0002983.md +++ b/md/UBERON/83/UBERON_0002983.md @@ -6,18 +6,18 @@ ## Synonyms - * lateral posterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62177] - * lateral posterior nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * lateral posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62177] - * laterodorsal nucleus, caudal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62177] - * nucleus dorso-caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * nucleus dorsocaudalis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * nucleus lateralis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * nucleus lateralis posterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * nucleus lateralis thalami posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_835] - * posterior lateral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62177] - * LP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_835[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral posterior complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LP] + * lateral posterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62177 ] + * lateral posterior nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * lateral posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62177 ] + * laterodorsal nucleus, caudal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62177 ] + * nucleus dorso-caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * nucleus dorsocaudalis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * nucleus lateralis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * nucleus lateralis posterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * nucleus lateralis thalami posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_835 ] + * posterior lateral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62177 ] + * LP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_835, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral posterior complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LP ] ## Cross-references @@ -28,10 +28,10 @@ * EV:0100212 * FMA:62177 * NIF_GrossAnatomy:birnlex_835 - * NeuroNames:327 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_835] + * NeuroNames:327 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_835 ] * SCTID:279155003 - * UMLS:C0228341 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_835] - * UMLS:C0228341 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus] + * UMLS:C0228341 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_835 ] + * UMLS:C0228341 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus ] * ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003083.md b/md/UBERON/83/UBERON_0003083.md index effe6fd50b..35089b95e0 100644 --- a/md/UBERON/83/UBERON_0003083.md +++ b/md/UBERON/83/UBERON_0003083.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003083 * *Label* = trunk neural crest - * *Definition* = Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trunk_neural_crest] + * *Definition* = Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trunk_neural_crest ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Post-cranial portion of the neural crest. Exact anatomical derivations not experimentally resolved in amphibians.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003183.md b/md/UBERON/83/UBERON_0003183.md index 1f6ef58a0d..aa24cc877a 100644 --- a/md/UBERON/83/UBERON_0003183.md +++ b/md/UBERON/83/UBERON_0003183.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004604 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000649 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003183 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_0003283.md b/md/UBERON/83/UBERON_0003283.md index e47da566cb..f2f86cc4a2 100644 --- a/md/UBERON/83/UBERON_0003283.md +++ b/md/UBERON/83/UBERON_0003283.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003283 * *Label* = mesentery of oesophagus - * *Definition* = A mesentery that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * esophagus mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003383.md b/md/UBERON/83/UBERON_0003383.md index c5d9861e05..ba9c2d3994 100644 --- a/md/UBERON/83/UBERON_0003383.md +++ b/md/UBERON/83/UBERON_0003383.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003383 * *Label* = cardiac muscle of interventricular septum - * *Definition* = A portion of cardiac muscle tissue that is part of a interventricular septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a interventricular septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardiac muscle tissue of interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84084] - * interventricular septum cardiac muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000999] - * interventricular septum heart muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004158] - * interventricular septum myocardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000999] + * cardiac muscle tissue of interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84084 ] + * interventricular septum cardiac muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000999 ] + * interventricular septum heart muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004158 ] + * interventricular septum myocardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000999 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interventricular septum](../../UBERON/94/UBERON_0002094.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003483.md b/md/UBERON/83/UBERON_0003483.md index bf6b26645e..8b9b894c6b 100644 --- a/md/UBERON/83/UBERON_0003483.md +++ b/md/UBERON/83/UBERON_0003483.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003483 * *Label* = thymus lymphoid tissue - * *Definition* = A portion of lymphoid tissue that is part of a thymus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of lymphoid tissue that is part of a thymus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lymphatic tissue of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic tissue of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphocytic tissue of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphocytic tissue of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphoid tissue of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphoid tissue of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymic lymphocytic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland lymphatic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland lymphocytic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland lymphoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus lymphatic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus lymphocytic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * lymphatic tissue of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic tissue of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphocytic tissue of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphocytic tissue of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphoid tissue of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphoid tissue of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymic lymphocytic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland lymphatic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland lymphocytic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland lymphoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus lymphatic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus lymphocytic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002673 * MESH:A06.407.850 - * UMLS:C1515429 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Lymphoid_Tissue] + * UMLS:C1515429 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Lymphoid_Tissue ] * ncithesaurus:Thymic_Lymphoid_Tissue ## Subsets @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphoid tissue](../../UBERON/44/UBERON_0001744.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thymus](../../UBERON/70/UBERON_0002370.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003583.md b/md/UBERON/83/UBERON_0003583.md index 1f3898f1a5..1dbbb9036f 100644 --- a/md/UBERON/83/UBERON_0003583.md +++ b/md/UBERON/83/UBERON_0003583.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003583 * *Label* = larynx connective tissue - * *Definition* = A portion of connective tissue that is part of a larynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a larynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * larynx portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * larynx textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * larynx portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * larynx textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001754 - * UMLS:C1708651 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Laryngeal_Connective_Tissue] + * UMLS:C1708651 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Laryngeal_Connective_Tissue ] * ncithesaurus:Laryngeal_Connective_Tissue ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003683.md b/md/UBERON/83/UBERON_0003683.md index 4c57f1c5c8..1971cb2dae 100644 --- a/md/UBERON/83/UBERON_0003683.md +++ b/md/UBERON/83/UBERON_0003683.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003683 * *Label* = rotator cuff - * *Definition* = a group of muscles and their tendons that act to stabilize the shoulder. The four muscles of the rotator cuff are over half of the seven scapulohumeral muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rotator_cuff] + * *Definition* = a group of muscles and their tendons that act to stabilize the shoulder. The four muscles of the rotator cuff are over half of the seven scapulohumeral muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rotator_cuff ] ## Synonyms - * musculotendinous cuff [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37018] - * rotator cuff [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37018] - * tendinous cuff [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37018] + * musculotendinous cuff [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37018 ] + * rotator cuff [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37018 ] + * tendinous cuff [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37018 ] ## Cross-references * FMA:37018 * GAID:160 * MESH:A02.633.567.912 - * UMLS:C0085515 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rotator_Cuff] + * UMLS:C0085515 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rotator_Cuff ] * Wikipedia:Rotator_cuff * ncithesaurus:Rotator_Cuff @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003883.md b/md/UBERON/83/UBERON_0003883.md index 388e9546fc..7a35555b47 100644 --- a/md/UBERON/83/UBERON_0003883.md +++ b/md/UBERON/83/UBERON_0003883.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003883 * *Label* = CA3 field of hippocampus - * *Definition* = Region III of hippocampus proper is a portion of the hippocampal formation. Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum. The region is conventionally divided into 3 divisions. CA3a is the part of the cell band which is most distal from the dentate (and closest to CA1). CA3b is the middle part of the band nearest to the fimbria/fornix connection. CA3c is the most proximal to the dentate, inserting into the hilus. The region overall has been considered to be the 'pacemaker' of the hippocampus. In CA3 much of the synchronous bursing activity associated with interictal epileptiform activity appears to be generated. The excitatory collateral interconnectivity appears to be the property of CA3 most responsible for this. CA3, unlike other regions, has pyramidal cell axon collaterals ramifying extensively with local region and making excitatory contacts with neighbors. CA3 has been implicated in a number of working theories on memory and learning hippocampal processes. Oscillatory rhythms (10-30Hz) are cholinergically driven patterns that depend on coupling of interneurons and pyramidal cell axons via gap junctions as well as glutaminergic (excitatory) and GABAergic (inhibitory) synapses. Sharp EEG waves seen here are also implicated in memory consolidation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Region_III_of_hippocampus_proper] + * *Definition* = Region III of hippocampus proper is a portion of the hippocampal formation. Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum. The region is conventionally divided into 3 divisions. CA3a is the part of the cell band which is most distal from the dentate (and closest to CA1). CA3b is the middle part of the band nearest to the fimbria/fornix connection. CA3c is the most proximal to the dentate, inserting into the hilus. The region overall has been considered to be the 'pacemaker' of the hippocampus. In CA3 much of the synchronous bursing activity associated with interictal epileptiform activity appears to be generated. The excitatory collateral interconnectivity appears to be the property of CA3 most responsible for this. CA3, unlike other regions, has pyramidal cell axon collaterals ramifying extensively with local region and making excitatory contacts with neighbors. CA3 has been implicated in a number of working theories on memory and learning hippocampal processes. Oscillatory rhythms (10-30Hz) are cholinergically driven patterns that depend on coupling of interneurons and pyramidal cell axons via gap junctions as well as glutaminergic (excitatory) and GABAergic (inhibitory) synapses. Sharp EEG waves seen here are also implicated in memory consolidation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Region_III_of_hippocampus_proper ] ## Synonyms @@ -13,20 +13,20 @@ * CA3 field of cornu ammonis * CA3 field of hippocampus * hippocampus CA3 - * regio iii cornus ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74045[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio iii hippocampi proprii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74045[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1204] + * regio iii cornus ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74045, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio iii hippocampi proprii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74045, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1204 ] * region 3 of Ammon's horn - * region iii of ammon's horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74045] - * region iii of hippocampus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74045] - * CA3 field of the Ammon horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CA3] - * CA3 field of the hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185] - * cornu Ammonis 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * field CA3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185] - * field CA3 of hippocampus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185] - * field CA3, Ammon's horn (Lorente de Ns) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185] - * regio hippocampi proprii III; regio III cornus ammonis; CA3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Region_III_of_hippocampus_proper[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * region CA3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:185] + * region iii of ammon's horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74045 ] + * region iii of hippocampus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74045 ] + * CA3 field of the Ammon horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CA3 ] + * CA3 field of the hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185 ] + * cornu Ammonis 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * field CA3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185 ] + * field CA3 of hippocampus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185 ] + * field CA3, Ammon's horn (Lorente de Ns) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185 ] + * regio hippocampi proprii III; regio III cornus ammonis; CA3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Region_III_of_hippocampus_proper, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * region CA3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:185 ] ## Cross-references @@ -37,9 +37,9 @@ * FMA:74045 * MA:0000952 * NIF_GrossAnatomy:birnlex_1204 - * NeuroNames:185 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1204] - * UMLS:C0694600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1204] - * UMLS:C0694600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:CA3_Field_of_the_Cornu_Ammonis] + * NeuroNames:185 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1204 ] + * UMLS:C0694600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1204 ] + * UMLS:C0694600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:CA3_Field_of_the_Cornu_Ammonis ] * Wikipedia:Region_III_of_hippocampus_proper * http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg * ncithesaurus:CA3_Field_of_the_Cornu_Ammonis @@ -60,8 +60,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0003983.md b/md/UBERON/83/UBERON_0003983.md index ee811ad243..5a8adb9fe7 100644 --- a/md/UBERON/83/UBERON_0003983.md +++ b/md/UBERON/83/UBERON_0003983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003983 * *Label* = conus arteriosus - * *Definition* = a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009464[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Conus_arteriosus] + * *Definition* = a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009464, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Conus_arteriosus ] * *Comment* = Terminology notes: we use the term CA for the anterior chamber if it is composed of cardiac muscle, contractile, and contains conal valves internally[Kardong] Taxon notes: Kardong says absent in adult tetrapods, check AAO ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Receives blood from the left atrium and becomes the median truncus arteriosus.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004083.md b/md/UBERON/83/UBERON_0004083.md index 3157806281..1aabbd2336 100644 --- a/md/UBERON/83/UBERON_0004083.md +++ b/md/UBERON/83/UBERON_0004083.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004083 * *Label* = cerebellum vermis lobule X - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009997] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009997 ] ## Synonyms * lobule X of cerebellum vermis * neuraxis nodulus - * nodulus (X) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:NOD] + * nodulus (X) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:NOD ] * nodulus of cerebellum * nodulus of vermis of cerebellum - * vermic lobule X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081235] - * nodulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001007] - * nodulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20081235] + * vermic lobule X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081235 ] + * nodulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001007 ] + * nodulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20081235 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004183.md b/md/UBERON/83/UBERON_0004183.md index 7ea8a86fb8..e299b92714 100644 --- a/md/UBERON/83/UBERON_0004183.md +++ b/md/UBERON/83/UBERON_0004183.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004183 * *Label* = labyrinthine layer blood vessel - * *Definition* = The embryonic vessels grow through the layer to come in close contact with the maternal blood supply [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060716] + * *Definition* = The embryonic vessels grow through the layer to come in close contact with the maternal blood supply [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060716 ] ## Synonyms - * blood vessel of labyrinthine layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of labyrinthine layer of placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of placenta labyrinth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * labyrinthine layer of placenta blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * placenta labyrinth blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of labyrinthine layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of labyrinthine layer of placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of placenta labyrinth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * labyrinthine layer of placenta blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * placenta labyrinth blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [placenta labyrinth](../../UBERON/46/UBERON_0003946.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004183 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004383.md b/md/UBERON/83/UBERON_0004383.md index 24caa554fe..a12dd4e2b6 100644 --- a/md/UBERON/83/UBERON_0004383.md +++ b/md/UBERON/83/UBERON_0004383.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004383 * *Label* = epiphysis of tibia - * *Definition* = An epiphysis that is part of a tibia [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a tibia [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * tibial epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33112] + * tibial epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33112 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tibia](../../UBERON/79/UBERON_0000979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004483.md b/md/UBERON/83/UBERON_0004483.md index e2a78e5ba9..e3ed519425 100644 --- a/md/UBERON/83/UBERON_0004483.md +++ b/md/UBERON/83/UBERON_0004483.md @@ -6,9 +6,9 @@ ## Synonyms - * iliocostalis muscle group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33062] - * iliocostalis muscles set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33062] - * set of iliocostalis muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33062] + * iliocostalis muscle group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33062 ] + * iliocostalis muscles set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33062 ] + * set of iliocostalis muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33062 ] ## Cross-references @@ -28,9 +28,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:33062 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004483 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_0004683.md b/md/UBERON/83/UBERON_0004683.md index 8dfd182e5e..9ae0724c32 100644 --- a/md/UBERON/83/UBERON_0004683.md +++ b/md/UBERON/83/UBERON_0004683.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004683 * *Label* = parasubiculum - * *Definition* = A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091002] + * *Definition* = A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091002 ] ## Synonyms - * parasubicular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091002] - * parasubiculum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091002] + * parasubicular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091002 ] + * parasubiculum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091002 ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:77604 * NIF_GrossAnatomy:nlx_anat_091002 * NeuroNames:2304 - * OldNeuroNames:2304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:nlx_anat_091002] + * OldNeuroNames:2304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:nlx_anat_091002 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004783.md b/md/UBERON/83/UBERON_0004783.md index c8fb637564..e2d1de13d2 100644 --- a/md/UBERON/83/UBERON_0004783.md +++ b/md/UBERON/83/UBERON_0004783.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004783 * *Label* = gall bladder serosa - * *Definition* = A serous membrane that is part of a gallbladder [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a gallbladder [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gall bladder serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gallbladder serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serosa of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous coat of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14659] - * serous membrane of gall bladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * serous membrane of gallbladder [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica serosa (vesica biliaris) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14659] - * tunica serosa vesicae biliaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14659[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * biliary serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001634] + * gall bladder serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gallbladder serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serosa of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous coat of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14659 ] + * serous membrane of gall bladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * serous membrane of gallbladder [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica serosa (vesica biliaris) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14659 ] + * tunica serosa vesicae biliaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14659, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * biliary serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001634 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gallbladder](../../UBERON/10/UBERON_0002110.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004883.md b/md/UBERON/83/UBERON_0004883.md index 56fadaf427..7942e4cf28 100644 --- a/md/UBERON/83/UBERON_0004883.md +++ b/md/UBERON/83/UBERON_0004883.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004883 * *Label* = lung mesenchyme - * *Definition* = the mass of tissue made up of mesenchymal cells in the lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060484] + * *Definition* = the mass of tissue made up of mesenchymal cells in the lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060484 ] ## Synonyms - * lung-associated mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060484] - * mesenchyme of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pulmonary mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060484] + * lung-associated mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060484 ] + * mesenchyme of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pulmonary mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060484 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0004983.md b/md/UBERON/83/UBERON_0004983.md index ddc5ff8526..c742a0814e 100644 --- a/md/UBERON/83/UBERON_0004983.md +++ b/md/UBERON/83/UBERON_0004983.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004983 * *Label* = mucosa of vagina - * *Definition* = A mucosa that is part of a vagina [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a vagina [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19975[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vagina mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vagina organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vaginal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19975] + * mucosa of organ of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19975, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vagina mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vagina organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vaginal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19975 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005083.md b/md/UBERON/83/UBERON_0005083.md index df24fdb93b..f2acaeb573 100644 --- a/md/UBERON/83/UBERON_0005083.md +++ b/md/UBERON/83/UBERON_0005083.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005083 * *Label* = nipple sheath - * *Definition* = a circular ingrowth of the epidermis around the region of the mammary sprout[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060659] + * *Definition* = a circular ingrowth of the epidermis around the region of the mammary sprout[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060659 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005283.md b/md/UBERON/83/UBERON_0005283.md index 399548c1f1..2fdc28fd46 100644 --- a/md/UBERON/83/UBERON_0005283.md +++ b/md/UBERON/83/UBERON_0005283.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005283 * *Label* = tela choroidea - * *Definition* = A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tela_chorioidea[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://isc.temple.edu/neuroanatomy/lab/embryo_new/choroid/] + * *Definition* = A structure found in the walls of the ventricles of the brain, consisting of part of the meninges (pia mater in mammals) plus ependyma[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tela_chorioidea, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://isc.temple.edu/neuroanatomy/lab/embryo_new/choroid/ ] * *Comment* = Vascularized tela choroidea is choroid plexus. AO notes: Note that the structure in ZFA may be different. ## Synonyms - * tela chorioidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242849] + * tela chorioidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242849 ] ## Cross-references @@ -26,8 +26,8 @@ * [organ component layer](../../UBERON/23/UBERON_0004923.md) * [part_of](../../BFO/50/BFO_0000050.md) some [ventricle of nervous system](../../UBERON/58/UBERON_0005358.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [choroid plexus](../../UBERON/86/UBERON_0001886.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [meningeal cluster](../../UBERON/43/UBERON_0010743.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus[ZFA:0000447]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005383.md b/md/UBERON/83/UBERON_0005383.md index e3c5d8da7d..9104497582 100644 --- a/md/UBERON/83/UBERON_0005383.md +++ b/md/UBERON/83/UBERON_0005383.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005383 * *Label* = caudate-putamen - * *Definition* = Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] + * *Definition* = Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] * *Comment* = CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM). Editor notes: we do not currently place rodent-specific taxon constraints here as this would cause taxon violations. There is an argument for merging this into dorsal striatum and treating the distinction as phenotypic ## Synonyms * caudate putamen - * caudateputamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * caudoputamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * caudate putamen (striatum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CPu] - * caudate putamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * caudate-putamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * caudateputamen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * dorsal striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * neostriatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] - * striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100312] + * caudateputamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * caudoputamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * caudate putamen (striatum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CPu ] + * caudate putamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * caudate-putamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * caudateputamen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * dorsal striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * neostriatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] + * striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100312 ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005483.md b/md/UBERON/83/UBERON_0005483.md index 36e7ebae22..9be7c1fb1b 100644 --- a/md/UBERON/83/UBERON_0005483.md +++ b/md/UBERON/83/UBERON_0005483.md @@ -6,7 +6,7 @@ ## Synonyms - * lobe of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71193] + * lobe of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71193 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005583.md b/md/UBERON/83/UBERON_0005583.md index eb2a7dcece..c5f79cf539 100644 --- a/md/UBERON/83/UBERON_0005583.md +++ b/md/UBERON/83/UBERON_0005583.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005583 * *Label* = rhombomere 6 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000995] + * lateral wall rhombomere 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000995 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 6](../../UBERON/19/UBERON_0005519.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005683.md b/md/UBERON/83/UBERON_0005683.md index b0a456dc36..16531f5b03 100644 --- a/md/UBERON/83/UBERON_0005683.md +++ b/md/UBERON/83/UBERON_0005683.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = EHDAA2:0001984 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005683 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_0005883.md b/md/UBERON/83/UBERON_0005883.md index ae8e4cb6d2..8db8a2ebb4 100644 --- a/md/UBERON/83/UBERON_0005883.md +++ b/md/UBERON/83/UBERON_0005883.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0005983.md b/md/UBERON/83/UBERON_0005983.md index 31fbccc7f1..ce50608443 100644 --- a/md/UBERON/83/UBERON_0005983.md +++ b/md/UBERON/83/UBERON_0005983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005983 * *Label* = heart layer - * *Definition* = the laminar structure of the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010545] + * *Definition* = the laminar structure of the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010545 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ component layer](../../UBERON/23/UBERON_0004923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006083.md b/md/UBERON/83/UBERON_0006083.md index 3ba40a530e..503862265c 100644 --- a/md/UBERON/83/UBERON_0006083.md +++ b/md/UBERON/83/UBERON_0006083.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006083 * *Label* = perirhinal cortex - * *Definition* = Region of cortex near to the rhinal sulcus. It is defined differently in different nomenclatures, due in part to the lack of agreement on the definition of the border of this region. In the rat, the perirhinal cortex occupies only caudal levels of the rhinal sulcus while in the monkey, it occurpies the full rostrocaudal extent of the rhinal sulcus (Burwell et al., Hippocampus, 5: 390-408, 1995). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005006] + * *Definition* = Region of cortex near to the rhinal sulcus. It is defined differently in different nomenclatures, due in part to the lack of agreement on the definition of the border of this region. In the rat, the perirhinal cortex occupies only caudal levels of the rhinal sulcus while in the monkey, it occurpies the full rostrocaudal extent of the rhinal sulcus (Burwell et al., Hippocampus, 5: 390-408, 1995). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005006 ] ## Synonyms - * perirhinal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005006] - * perirhinal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005006] - * Brodmann's area 35 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2425] - * area perirhinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2425[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * perihinal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PERI] - * precommissural nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRC] + * perirhinal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005006 ] + * perirhinal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005006 ] + * Brodmann's area 35 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2425 ] + * area perirhinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2425, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * perihinal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PERI ] + * precommissural nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRC ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006183.md b/md/UBERON/83/UBERON_0006183.md index 384a244cf4..267813c287 100644 --- a/md/UBERON/83/UBERON_0006183.md +++ b/md/UBERON/83/UBERON_0006183.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006183 * *Label* = mesonephric glomerular capillary - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061249] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061249 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [glomerular capillary](../../UBERON/12/UBERON_0004212.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006183 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006283.md b/md/UBERON/83/UBERON_0006283.md index 3480c41cf7..eb9e6605bf 100644 --- a/md/UBERON/83/UBERON_0006283.md +++ b/md/UBERON/83/UBERON_0006283.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006283 * *Label* = primitive ventricle of heart - * *Definition* = The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Embryonic_ventricle] + * *Definition* = The embryonic ventricle or primitive ventricle of the developing heart gives rise to the trabeculated parts of the left and right ventricles. In contrast, the smooth parts of the left and right ventricles originate from the embryological bulbus cordis. The primitive ventricle becomes divided by a septum, the septum inferius or ventricular septum, which grows upward from the lower part of the ventricle, its position being indicated on the surface of the heart by a furrow. Its dorsal part increases more rapidly than its ventral portion, and fuses with the dorsal part of the septum intermedium. For a time an interventricular foramen exists above its ventral portion, but this foramen is ultimately closed by the fusion of the aortic septum with the ventricular septum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Embryonic_ventricle ] ## Synonyms * early heart ventricle * embryonic heart ventricle * future heart ventricle - * primitive ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001531] + * primitive ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001531 ] * embryonic ventricle ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006483.md b/md/UBERON/83/UBERON_0006483.md index 1be539b5e0..0c38a3b41f 100644 --- a/md/UBERON/83/UBERON_0006483.md +++ b/md/UBERON/83/UBERON_0006483.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006483 * *Label* = Brodmann (1909) area 46 - * *Definition* = Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_46] + * *Definition* = Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_46 ] ## Synonyms - * B09-46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1778] - * BA46 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1778] - * Brodmann area 46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68643] - * Brodmann area 46, middle frontal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1778] - * area 46 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68643] - * area 46 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1778] - * area frontalis media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1778] - * middle frontal area 46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68643] - * B09-46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1778[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * middle frontal area 46 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_46] + * B09-46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1778 ] + * BA46 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1778 ] + * Brodmann area 46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68643 ] + * Brodmann area 46, middle frontal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1778 ] + * area 46 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68643 ] + * area 46 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1778 ] + * area frontalis media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1778 ] + * middle frontal area 46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68643 ] + * B09-46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1778, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * middle frontal area 46 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_46 ] ## Cross-references @@ -25,7 +25,7 @@ * NIF_GrossAnatomy:birnlex_1778 * NeuroNames:2105 * SCTID:384806000 - * UMLS:C1272512 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1778] + * UMLS:C1272512 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1778 ] * Wikipedia:Brodmann_area_46 * http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006583.md b/md/UBERON/83/UBERON_0006583.md index 4c40be926a..3ec0a0a4fb 100644 --- a/md/UBERON/83/UBERON_0006583.md +++ b/md/UBERON/83/UBERON_0006583.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006583 * *Label* = statocyst - * *Definition* = a balance sensory receptor present in some aquatic invertebrates[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Statocyst] + * *Definition* = a balance sensory receptor present in some aquatic invertebrates[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Statocyst ] ## Synonyms @@ -38,8 +38,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6544 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_6657 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7586 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006683.md b/md/UBERON/83/UBERON_0006683.md index 918ea855f2..33b56c4552 100644 --- a/md/UBERON/83/UBERON_0006683.md +++ b/md/UBERON/83/UBERON_0006683.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006683 * *Label* = posterior fontanelle - * *Definition* = In humans, the posterior fontanelle (or occipital fontanelle) is a gap between bones in the skull, triangular in form and situated at the junction of the sagittal suture and lambdoidal suture. It generally closes in 68 weeks from birth. A delay in closure is associated with congential hypothyroidism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_fontanelle] + * *Definition* = In humans, the posterior fontanelle (or occipital fontanelle) is a gap between bones in the skull, triangular in form and situated at the junction of the sagittal suture and lambdoidal suture. It generally closes in 68 weeks from birth. A delay in closure is associated with congential hypothyroidism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_fontanelle ] ## Synonyms - * fonticulus posterior [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * occipital posterior [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior fontanelle of skull [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fonticulus posterior [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * occipital posterior [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior fontanelle of skull [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006783.md b/md/UBERON/83/UBERON_0006783.md index 2fd2e0fc3a..58c1253eb0 100644 --- a/md/UBERON/83/UBERON_0006783.md +++ b/md/UBERON/83/UBERON_0006783.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006783 * *Label* = layer of superior colliculus - * *Definition* = The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] + * *Definition* = The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] ## Synonyms - * cytoarchitectural part of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005033] + * cytoarchitectural part of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005033 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ component layer](../../UBERON/23/UBERON_0004923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus](../../UBERON/45/UBERON_0001945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0006983.md b/md/UBERON/83/UBERON_0006983.md index 108d2d56f6..944b66ebb9 100644 --- a/md/UBERON/83/UBERON_0006983.md +++ b/md/UBERON/83/UBERON_0006983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006983 * *Label* = anatomical point - * *Definition* = Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0007283.md b/md/UBERON/83/UBERON_0007283.md index 494266b4aa..643edac5a9 100644 --- a/md/UBERON/83/UBERON_0007283.md +++ b/md/UBERON/83/UBERON_0007283.md @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [primitive knot](../../UBERON/62/UBERON_0003062.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Presumptive structure fated to become the shield. Defined by fate mapping[ZFIN:curator]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0007383.md b/md/UBERON/83/UBERON_0007383.md index 700115b91e..ab6a84250f 100644 --- a/md/UBERON/83/UBERON_0007383.md +++ b/md/UBERON/83/UBERON_0007383.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007383 * *Label* = enveloping layer of ectoderm - * *Definition* = Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * *Definition* = Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Synonyms - * EVL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000086] - * enveloping layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * EVL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000086 ] + * enveloping layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. Kimmel et al, 1995.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from superficial blastomere (TAO:0001484)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0007683.md b/md/UBERON/83/UBERON_0007683.md index e1f02850b1..8c0a5e1050 100644 --- a/md/UBERON/83/UBERON_0007683.md +++ b/md/UBERON/83/UBERON_0007683.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0008283.md b/md/UBERON/83/UBERON_0008283.md index 5dde2449f6..7379ca86c1 100644 --- a/md/UBERON/83/UBERON_0008283.md +++ b/md/UBERON/83/UBERON_0008283.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008283 * *Label* = columnella - * *Definition* = a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Columella_(gastropod)] + * *Definition* = a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Columella_(gastropod) ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0008583.md b/md/UBERON/83/UBERON_0008583.md index c3e6176426..230e4003d6 100644 --- a/md/UBERON/83/UBERON_0008583.md +++ b/md/UBERON/83/UBERON_0008583.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008583 * *Label* = transverse muscle of tongue - * *Definition* = A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue] + * *Definition* = A muscle of the tongue that consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue ] ## Synonyms - * intrinsic tongue muscle transverse component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002328] - * transverse lingual muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46695] - * musculus transversus linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transverse muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue] - * transversus linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue] - * transversus lingu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue] - * transversus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transverse_muscle_of_tongue] + * intrinsic tongue muscle transverse component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002328 ] + * transverse lingual muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46695 ] + * musculus transversus linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transverse muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue ] + * transversus linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue ] + * transversus lingu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue ] + * transversus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transverse_muscle_of_tongue ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:46695 * MA:0002328 * SCTID:244792003 - * UMLS:C1708561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component] + * UMLS:C1708561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component ] * Wikipedia:Transverse_muscle_of_tongue * http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png * ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0008783.md b/md/UBERON/83/UBERON_0008783.md index d55306cea8..47a9cb6222 100644 --- a/md/UBERON/83/UBERON_0008783.md +++ b/md/UBERON/83/UBERON_0008783.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008783 * *Label* = dorsal venous arch - * *Definition* = The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_venous_arch_of_the_foot] + * *Definition* = The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_venous_arch_of_the_foot ] ## Synonyms - * arcus venosus dorsalis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_venous_arch_of_the_foot] - * dorsal venous arch of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44356] - * arcus venosus dorsalis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_venous_arch_of_the_foot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arcus venosus dorsalis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_venous_arch_of_the_foot ] + * dorsal venous arch of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44356 ] + * arcus venosus dorsalis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_venous_arch_of_the_foot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0008883.md b/md/UBERON/83/UBERON_0008883.md index a5a8615bca..c8ccd9b17f 100644 --- a/md/UBERON/83/UBERON_0008883.md +++ b/md/UBERON/83/UBERON_0008883.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008883 * *Label* = osteoid - * *Definition* = Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000046[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000046, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = AO notes: Note that in VSAO this was classified both as tissue and acellular extracellular matrix. Consider also the AEO class 'bone condensation'. is_a intercellular matrix in FMA. ## Synonyms - * osteoid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * pre-bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] - * prebone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * prebone tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66830[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002113] + * osteoid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * pre-bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] + * prebone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * prebone tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66830, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002113 ] ## Cross-references * FMA:66830 * SCTID:39365008 - * UMLS:C0682561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Osteoid] + * UMLS:C0682561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Osteoid ] * VSAO:0000046 * Wikipedia:Osteoid * XAO:0004035 @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue.[VSAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Newly formed organic bone matrix secreted by osteoblasts, that exists prior to calcification; it is comprised mainly of type I collagen fibers, chondroitin sulfate and osteocalci[ISBN:0-683-40008-8]n * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: subclass proteinaceous extracellular matrix (VSAO:0000021)[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0009483.md b/md/UBERON/83/UBERON_0009483.md index 1f46673b0e..903b400425 100644 --- a/md/UBERON/83/UBERON_0009483.md +++ b/md/UBERON/83/UBERON_0009483.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009483 * *Label* = mesentery of foregut-midgut junction - * *Definition* = A mesentery that is part of a foregut-midgut junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a foregut-midgut junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foregut-midgut junction mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000430] + * foregut-midgut junction mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000430 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut-midgut junction](../../UBERON/35/UBERON_0006235.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0009583.md b/md/UBERON/83/UBERON_0009583.md index 7cccdbb828..0d68c363d8 100644 --- a/md/UBERON/83/UBERON_0009583.md +++ b/md/UBERON/83/UBERON_0009583.md @@ -6,7 +6,7 @@ ## Synonyms - * mantle layer lateral wall spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000911] + * mantle layer lateral wall spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000911 ] * spinal cord lateral wall mantle layer ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0009883.md b/md/UBERON/83/UBERON_0009883.md index dd5f623224..3d74061318 100644 --- a/md/UBERON/83/UBERON_0009883.md +++ b/md/UBERON/83/UBERON_0009883.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009883 * *Label* = medullary ray - * *Definition* = A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011347[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy)] + * *Definition* = A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011347, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy) ] * *Comment* = Termonology notes: Their name is potentially misleading -- the "medullary" refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla. AO notes: FMA says parenchyma, MP says cortex ## Synonyms - * Ferrein's pyramid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011347] - * kidney medullary ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011347] - * renal medullary ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011347] + * Ferrein's pyramid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011347 ] + * kidney medullary ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011347 ] + * renal medullary ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011347 ] ## Cross-references @@ -26,7 +26,7 @@ * [organ part](../../UBERON/64/UBERON_0000064.md) * [urinary system structure](../../UBERON/54/UBERON_0006554.md) * [part_of](../../BFO/50/BFO_0000050.md) some [cortex of kidney](../../UBERON/25/UBERON_0001225.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [nephron tubule](../../UBERON/31/UBERON_0001231.md) ## Equivalencies @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010083.md b/md/UBERON/83/UBERON_0010083.md index 41f3111161..e315c59d91 100644 --- a/md/UBERON/83/UBERON_0010083.md +++ b/md/UBERON/83/UBERON_0010083.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010083 * *Label* = future dermis - * *Definition* = Mesenchyme that has_potential_to_develop_into a dermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that has_potential_to_develop_into a dermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: check development ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [dermis](../../UBERON/67/UBERON_0002067.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010183.md b/md/UBERON/83/UBERON_0010183.md index 4871117e1f..4e15396b4e 100644 --- a/md/UBERON/83/UBERON_0010183.md +++ b/md/UBERON/83/UBERON_0010183.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010183 * *Label* = liver trabecula - * *Definition* = A trabecula that is part of a liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060344[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A trabecula that is part of a liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060344, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [trabecula](../../UBERON/40/UBERON_0000440.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010183 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010283.md b/md/UBERON/83/UBERON_0010283.md index 71a294b58d..55ba1a9352 100644 --- a/md/UBERON/83/UBERON_0010283.md +++ b/md/UBERON/83/UBERON_0010283.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010283 * *Label* = oblique pericardial sinus - * *Definition* = The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardial_sinus] + * *Definition* = The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardial_sinus ] ## Synonyms - * oblique sinus of pericardial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77133] + * oblique sinus of pericardial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77133 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010583.md b/md/UBERON/83/UBERON_0010583.md index 12cb3149fd..8e4d7b60f7 100644 --- a/md/UBERON/83/UBERON_0010583.md +++ b/md/UBERON/83/UBERON_0010583.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010583 * *Label* = pedal digit 4 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 4 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 4 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 4 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4 mesenchyme](../../UBERON/98/UBERON_0005698.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010683.md b/md/UBERON/83/UBERON_0010683.md index c5789c7e99..1221d4de3e 100644 --- a/md/UBERON/83/UBERON_0010683.md +++ b/md/UBERON/83/UBERON_0010683.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010683 * *Label* = pedal digit 4 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit 4 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit 4 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 4 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 4 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 4 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4 mesenchyme](../../UBERON/98/UBERON_0005698.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010883.md b/md/UBERON/83/UBERON_0010883.md index 3d6143decf..392c809018 100644 --- a/md/UBERON/83/UBERON_0010883.md +++ b/md/UBERON/83/UBERON_0010883.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010883 * *Label* = forelimb cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a forelimb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a forelimb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * wing cartilaginous condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing cartilaginous condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0010983.md b/md/UBERON/83/UBERON_0010983.md index 11354314ca..3690fa9bd0 100644 --- a/md/UBERON/83/UBERON_0010983.md +++ b/md/UBERON/83/UBERON_0010983.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011183.md b/md/UBERON/83/UBERON_0011183.md index 5099917496..f6ae2716bb 100644 --- a/md/UBERON/83/UBERON_0011183.md +++ b/md/UBERON/83/UBERON_0011183.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011183 * *Label* = corpus spongiosum of penis - * *Definition* = Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_spongiosum_penis] + * *Definition* = Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_spongiosum_penis ] * *Comment* = Function notes: The function of the corpus spongiosum in erection is to prevent the urethra from pinching closed, thereby maintaining the urethra as a viable channel for ejaculation. To do this, the corpus spongiosum remains pliable during erection while the corpora cavernosum penis becomes engorged with blood.[WP] ## Synonyms - * spongiose body of penis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19617] - * corpus cavernosum urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_spongiosum_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * corpus cavernosum urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_spongiosum_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#DEPRECATED] - * corpus spongiosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corpus_spongiosum_penis] + * spongiose body of penis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19617 ] + * corpus cavernosum urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_spongiosum_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * corpus cavernosum urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_spongiosum_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#DEPRECATED ] + * corpus spongiosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corpus_spongiosum_penis ] ## Cross-references @@ -19,7 +19,7 @@ * EMAPA:29856 * FMA:19617 * SCTID:279712008 - * UMLS:C1522442 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corpus_Spongiosum] + * UMLS:C1522442 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corpus_Spongiosum ] * Wikipedia:Corpus_spongiosum_penis * http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png * ncithesaurus:Corpus_Spongiosum @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011183 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011283.md b/md/UBERON/83/UBERON_0011283.md index 4bb26828ac..6a04090d23 100644 --- a/md/UBERON/83/UBERON_0011283.md +++ b/md/UBERON/83/UBERON_0011283.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011283 * *Label* = epoophoron - * *Definition* = A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] + * *Definition* = A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] ## Synonyms - * organ of Rosenmuller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18691] - * epooephoron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] - * epophoron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] - * organ of Rosenmller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] - * organ of rosenmueller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] - * organ of rosenmuller [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] - * parovarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epoophoron] + * organ of Rosenmuller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18691 ] + * epooephoron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] + * epophoron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] + * organ of Rosenmller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] + * organ of rosenmueller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] + * organ of rosenmuller [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] + * parovarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epoophoron ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0001301 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011383.md b/md/UBERON/83/UBERON_0011383.md index 988e47a2b3..806111ddb0 100644 --- a/md/UBERON/83/UBERON_0011383.md +++ b/md/UBERON/83/UBERON_0011383.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011383 * *Label* = inferior pancreaticoduodenal vein - * *Definition* = A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] + * *Definition* = A blood vessel running parallel to the inferior pancreatico-duodenal artery that drains blood from the pancreas and duodenum into the splenic vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Inferior_Pancreatico-Duodenal_Vein ] ## Synonyms - * inferior pancreatico-duodenal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002191] + * inferior pancreatico-duodenal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002191 ] ## Cross-references * MA:0002191 - * UMLS:C1711328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Pancreatico-Duodenal_Vein] + * UMLS:C1711328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Pancreatico-Duodenal_Vein ] * ncithesaurus:Inferior_Pancreatico-Duodenal_Vein ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011383 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011583.md b/md/UBERON/83/UBERON_0011583.md index 0d47987845..cafdc7849a 100644 --- a/md/UBERON/83/UBERON_0011583.md +++ b/md/UBERON/83/UBERON_0011583.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011583 * *Label* = stylopodial skeleton - * *Definition* = Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005007] + * *Definition* = Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005007 ] ## Synonyms * stylopodium skeleton * propodial skeleton - * propodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005007] - * stylopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005007] + * propodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005007 ] + * stylopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005007 ] * stylopodium ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [stylopod](../../UBERON/72/UBERON_0002472.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Proximal element of the limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively.[VSAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = propodial * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = stylopodial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011683.md b/md/UBERON/83/UBERON_0011683.md index bdc2eb8070..5c29744ed2 100644 --- a/md/UBERON/83/UBERON_0011683.md +++ b/md/UBERON/83/UBERON_0011683.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011683 * *Label* = adductor mandibulae - * *Definition* = An adductor muscle that acts on the jaw. In some species, this is subdivided into segments based on attachment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An adductor muscle that acts on the jaw. In some species, this is subdivided into segments based on attachment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * dorsal adductor mandibulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007049] + * dorsal adductor mandibulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007049 ] * m. adductor mandibulae - * adductor mandibulae complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0000227[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * adductor mandibulae complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0000227, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * levator mandibulae ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Is a mandibular muscle that forms along the palatoquadrates and inserts on Meckel's cartilages and functions in jaw closing[ZFA:0007049]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In teleosts, the complex is composed of several derived muscles that attach to different parts of the highly kinetic skull. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011783.md b/md/UBERON/83/UBERON_0011783.md index 05ca05c44c..97da95bf4e 100644 --- a/md/UBERON/83/UBERON_0011783.md +++ b/md/UBERON/83/UBERON_0011783.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011783 * *Label* = feather follicle placode - * *Definition* = an epidermal thickening above a condensation of dermal cells that will give rise to a feather follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = an epidermal thickening above a condensation of dermal cells that will give rise to a feather follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Synonyms - * feather bud primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16172986] + * feather bud primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16172986 ] * feather placode * feather primordium @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [feather follicle](../../UBERON/82/UBERON_0011782.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0011983.md b/md/UBERON/83/UBERON_0011983.md index ecaf3d74cb..69449f3607 100644 --- a/md/UBERON/83/UBERON_0011983.md +++ b/md/UBERON/83/UBERON_0011983.md @@ -9,8 +9,8 @@ * eighth finger * fore digit VIII - * fore limb digit 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 8 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011983 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0012083.md b/md/UBERON/83/UBERON_0012083.md index 7269318ef8..8085d4b0fd 100644 --- a/md/UBERON/83/UBERON_0012083.md +++ b/md/UBERON/83/UBERON_0012083.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012083 * *Label* = lumen of primary bronchus - * *Definition* = An anatomical cavity that is part of a main bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a main bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumen of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13116] - * main bronchial lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13116] + * lumen of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13116 ] + * main bronchial lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13116 ] * principal bronchial lumen ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0012283.md b/md/UBERON/83/UBERON_0012283.md index 933cdb4f0c..62b919d21b 100644 --- a/md/UBERON/83/UBERON_0012283.md +++ b/md/UBERON/83/UBERON_0012283.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012283 * *Label* = abnormal femoral fat pad morphology - * *Definition* = encapsulated adipose tissue associated with the femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008905] + * *Definition* = encapsulated adipose tissue associated with the femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008905 ] ## Synonyms - * femoral fat depot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008905] + * femoral fat depot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008905 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb stylopod](../../UBERON/76/UBERON_0000376.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0012483.md b/md/UBERON/83/UBERON_0012483.md index 880b5a7095..57d77523f2 100644 --- a/md/UBERON/83/UBERON_0012483.md +++ b/md/UBERON/83/UBERON_0012483.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012483 * *Label* = serosa of cloaca - * *Definition* = A serous membrane that is part of a cloaca [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A serous membrane that is part of a cloaca [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0013483.md b/md/UBERON/83/UBERON_0013483.md index 5fe4e6247d..a1e11a26c1 100644 --- a/md/UBERON/83/UBERON_0013483.md +++ b/md/UBERON/83/UBERON_0013483.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013483 * *Label* = crypt of Lieberkuhn of jejunum - * *Definition* = An intestinal crypt that is located in the jejunum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intestinal crypt that is located in the jejunum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0013583.md b/md/UBERON/83/UBERON_0013583.md index ee208c1cb9..20cb2d5f04 100644 --- a/md/UBERON/83/UBERON_0013583.md +++ b/md/UBERON/83/UBERON_0013583.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013583 * *Label* = metapodium bone 3 - * *Definition* = A metapodial bone that is associated with digit III. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A metapodial bone that is associated with digit III. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * 3rd metapodium bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * metapodial bone III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * 3rd metapodium bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * metapodial bone III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * metapodium 3 * metapodium III - * cannon bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Metacarpal_bones] + * cannon bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Equine_forelimb_anatomy#Metacarpal_bones ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013583 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0013683.md b/md/UBERON/83/UBERON_0013683.md index 822390b545..2063cdc90e 100644 --- a/md/UBERON/83/UBERON_0013683.md +++ b/md/UBERON/83/UBERON_0013683.md @@ -6,7 +6,7 @@ ## Synonyms - * left thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258716] + * left thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258716 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal thalamus](../../UBERON/03/UBERON_0004703.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0014283.md b/md/UBERON/83/UBERON_0014283.md index 509c0b5bf8..83913a164d 100644 --- a/md/UBERON/83/UBERON_0014283.md +++ b/md/UBERON/83/UBERON_0014283.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014283 * *Label* = piriform cortex layer 3 - * *Definition* = Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091009] + * *Definition* = Deepest of 3 cytoarchitecturally defined layers of the piriform cortex characterized by a moderately high density of pyramidal cells and large numbers of basal dendrites descending from pyramidal cells in layer 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091009 ] ## Synonyms - * layer 3 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091009] - * piriform cortex layer 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091009] - * layer 3 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091009] + * layer 3 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091009 ] + * piriform cortex layer 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091009 ] + * layer 3 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091009 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[contributor](../../or/contributor.md)* = Maryann Martone - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014283 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0014483.md b/md/UBERON/83/UBERON_0014483.md index 7d041b7b07..15e23b7936 100644 --- a/md/UBERON/83/UBERON_0014483.md +++ b/md/UBERON/83/UBERON_0014483.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014483 * *Label* = distal phalanx of digit 1 - * *Definition* = A distal phalanx that is part of a digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal phalanx that is part of a digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 1](../../UBERON/48/UBERON_0006048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014483 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0014683.md b/md/UBERON/83/UBERON_0014683.md index 9bbf456d96..55989dc226 100644 --- a/md/UBERON/83/UBERON_0014683.md +++ b/md/UBERON/83/UBERON_0014683.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014683 * *Label* = parasymphisial tooth whorl - * *Definition* = A tooth whorl located at or near the mandibular symphysis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A tooth whorl located at or near the mandibular symphysis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8287 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014683 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0014783.md b/md/UBERON/83/UBERON_0014783.md index dac0433a8e..c1bc03a136 100644 --- a/md/UBERON/83/UBERON_0014783.md +++ b/md/UBERON/83/UBERON_0014783.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014783 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0014883.md b/md/UBERON/83/UBERON_0014883.md index 675f961fc7..4ce84c13cd 100644 --- a/md/UBERON/83/UBERON_0014883.md +++ b/md/UBERON/83/UBERON_0014883.md @@ -6,12 +6,12 @@ ## Synonyms - * distal end of distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] - * distal end of distal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] - * distal epiphysis of distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] - * head of distal phalanx of middle finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] - * head of distal phalanx of third digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] - * head of distal phalanx of third finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37633] + * distal end of distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] + * distal end of distal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] + * distal epiphysis of distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] + * head of distal phalanx of middle finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] + * head of distal phalanx of third digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] + * head of distal phalanx of third finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37633 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 3](../../UBERON/12/UBERON_0004312.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014883 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_0015083.md b/md/UBERON/83/UBERON_0015083.md index 91179cb260..dab264aa4c 100644 --- a/md/UBERON/83/UBERON_0015083.md +++ b/md/UBERON/83/UBERON_0015083.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [proximal tarsal bone endochondral element](../../UBERON/81/UBERON_0015081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015083 + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2000083.md b/md/UBERON/83/UBERON_2000083.md index ab1d597022..fea75c1c50 100644 --- a/md/UBERON/83/UBERON_2000083.md +++ b/md/UBERON/83/UBERON_2000083.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2000183.md b/md/UBERON/83/UBERON_2000183.md index e5c436691b..54c625e6e6 100644 --- a/md/UBERON/83/UBERON_2000183.md +++ b/md/UBERON/83/UBERON_2000183.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2000283.md b/md/UBERON/83/UBERON_2000283.md index 1f8d0c0a64..24e57ccf52 100644 --- a/md/UBERON/83/UBERON_2000283.md +++ b/md/UBERON/83/UBERON_2000283.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001107 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_2000883.md b/md/UBERON/83/UBERON_2000883.md index 3bf4572809..8b3d2a179f 100644 --- a/md/UBERON/83/UBERON_2000883.md +++ b/md/UBERON/83/UBERON_2000883.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000883[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000883, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_2000983.md b/md/UBERON/83/UBERON_2000983.md index 4af52c819d..8eb83306ab 100644 --- a/md/UBERON/83/UBERON_2000983.md +++ b/md/UBERON/83/UBERON_2000983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000983 * *Label* = somite 9 - * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[core#somite_number](../../core#somite/er/core#somite_number.md)* = 9 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001183.md b/md/UBERON/83/UBERON_2001183.md index ad7ce33cf6..9f42f410b0 100644 --- a/md/UBERON/83/UBERON_2001183.md +++ b/md/UBERON/83/UBERON_2001183.md @@ -6,7 +6,7 @@ ## Synonyms - * stratum laxum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001183] + * stratum laxum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001183 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001483.md b/md/UBERON/83/UBERON_2001483.md index d828dbd17a..e96fc8d107 100644 --- a/md/UBERON/83/UBERON_2001483.md +++ b/md/UBERON/83/UBERON_2001483.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001483 * *Label* = middle lateral line ganglion - * *Definition* = The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001583.md b/md/UBERON/83/UBERON_2001583.md index 39b29d7039..030fabdc29 100644 --- a/md/UBERON/83/UBERON_2001583.md +++ b/md/UBERON/83/UBERON_2001583.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001583 * *Label* = preural centrum 1+ ural centrum 1 - * *Definition* = Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001683.md b/md/UBERON/83/UBERON_2001683.md index 8392464d5f..11f3a20f46 100644 --- a/md/UBERON/83/UBERON_2001683.md +++ b/md/UBERON/83/UBERON_2001683.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001683 * *Label* = transcapular ligament - * *Definition* = Ligament that is attached to supracleithrum and basioccipital. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that is attached to supracleithrum and basioccipital. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * Baudelot's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001683] - * transscapular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001683] + * Baudelot's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001683 ] + * transscapular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001683 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001783.md b/md/UBERON/83/UBERON_2001783.md index 6a8cd7dd53..f00985c186 100644 --- a/md/UBERON/83/UBERON_2001783.md +++ b/md/UBERON/83/UBERON_2001783.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001783 * *Label* = supraoccipital crest - * *Definition* = Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. ## Synonyms - * supraoccipital process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001783] - * supraoccipital spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001783] + * supraoccipital process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001783 ] + * supraoccipital spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001783 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001883.md b/md/UBERON/83/UBERON_2001883.md index dd7c257d14..5365b769cf 100644 --- a/md/UBERON/83/UBERON_2001883.md +++ b/md/UBERON/83/UBERON_2001883.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2001983.md b/md/UBERON/83/UBERON_2001983.md index c520e2b572..2d1043fd76 100644 --- a/md/UBERON/83/UBERON_2001983.md +++ b/md/UBERON/83/UBERON_2001983.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001983 * *Label* = centrum 1 - * *Definition* = Centrum that is part of vertebra 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2002083.md b/md/UBERON/83/UBERON_2002083.md index 843d209786..3efcc4501d 100644 --- a/md/UBERON/83/UBERON_2002083.md +++ b/md/UBERON/83/UBERON_2002083.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002083 * *Label* = fringing fulcrum - * *Definition* = Fulcrum that is a small, paired dermal structure associated with the marginal, leading rays of paired and/or unpaired fins. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Fulcrum that is a small, paired dermal structure associated with the marginal, leading rays of paired and/or unpaired fins. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * fringing fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002083[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fringing fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002083, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2002283.md b/md/UBERON/83/UBERON_2002283.md index faeb26b40c..1e3665dced 100644 --- a/md/UBERON/83/UBERON_2002283.md +++ b/md/UBERON/83/UBERON_2002283.md @@ -6,8 +6,8 @@ ## Synonyms - * spot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002283] - * spots [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002283[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * spot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002283 ] + * spots [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002283, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2005083.md b/md/UBERON/83/UBERON_2005083.md index d3643cc0fd..4e5b77faab 100644 --- a/md/UBERON/83/UBERON_2005083.md +++ b/md/UBERON/83/UBERON_2005083.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2005183.md b/md/UBERON/83/UBERON_2005183.md index a4a2022eb3..a73963edc8 100644 --- a/md/UBERON/83/UBERON_2005183.md +++ b/md/UBERON/83/UBERON_2005183.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 2 ipsilateral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005183] + * middle dorsal 2 ipsilateral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005183 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_2005383.md b/md/UBERON/83/UBERON_2005383.md index a8436eba06..a3fbdb7a3a 100644 --- a/md/UBERON/83/UBERON_2005383.md +++ b/md/UBERON/83/UBERON_2005383.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005383 * *Label* = dorsal fin proximal radial bone 6 - * *Definition* = dorsal fin proximal radial 6 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 6 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 6](../../UBERON/83/UBERON_2105383.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2105383.md b/md/UBERON/83/UBERON_2105383.md index ac63bea9fb..464e6c2f4a 100644 --- a/md/UBERON/83/UBERON_2105383.md +++ b/md/UBERON/83/UBERON_2105383.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 6](../../UBERON/69/UBERON_2005369.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_2205383.md b/md/UBERON/83/UBERON_2205383.md index 23614c7621..51e84280fe 100644 --- a/md/UBERON/83/UBERON_2205383.md +++ b/md/UBERON/83/UBERON_2205383.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205383 * *Label* = dorsal fin proximal radial cartilage 6 - * *Definition* = dorsal fin proximal radial 6 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 6 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 6](../../UBERON/83/UBERON_2105383.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000183.md b/md/UBERON/83/UBERON_3000183.md index 5e5d39fd17..48a71a2921 100644 --- a/md/UBERON/83/UBERON_3000183.md +++ b/md/UBERON/83/UBERON_3000183.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000283.md b/md/UBERON/83/UBERON_3000283.md index 96a6012e76..f3c6d13b95 100644 --- a/md/UBERON/83/UBERON_3000283.md +++ b/md/UBERON/83/UBERON_3000283.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000283 * *Label* = margo orbitalis of squamosal - * *Definition* = Anterior margin of the squamosal that takes part in the formation of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior margin of the squamosal that takes part in the formation of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000583.md b/md/UBERON/83/UBERON_3000583.md index eaed73bc89..90fd0a3da8 100644 --- a/md/UBERON/83/UBERON_3000583.md +++ b/md/UBERON/83/UBERON_3000583.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000683.md b/md/UBERON/83/UBERON_3000683.md index 2fd0e71e64..7d92d18934 100644 --- a/md/UBERON/83/UBERON_3000683.md +++ b/md/UBERON/83/UBERON_3000683.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000683 * *Label* = sinus nervi hypoglossi - * *Definition* = Depression that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Rocek_2003] + * *Definition* = Depression that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Rocek_2003 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000783.md b/md/UBERON/83/UBERON_3000783.md index efef9a7498..022d285d75 100644 --- a/md/UBERON/83/UBERON_3000783.md +++ b/md/UBERON/83/UBERON_3000783.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000783 * *Label* = fovea capitis of humerus - * *Definition* = Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] * *Comment* = Not to be confused with the fovea capitis of the femur ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3000883.md b/md/UBERON/83/UBERON_3000883.md index 6682921f55..acb403159f 100644 --- a/md/UBERON/83/UBERON_3000883.md +++ b/md/UBERON/83/UBERON_3000883.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000883 * *Label* = recessus coccygealis - * *Definition* = Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3010183.md b/md/UBERON/83/UBERON_3010183.md index edf2620cb4..d369d350d0 100644 --- a/md/UBERON/83/UBERON_3010183.md +++ b/md/UBERON/83/UBERON_3010183.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3010283.md b/md/UBERON/83/UBERON_3010283.md index bc888117f6..5af31a52e9 100644 --- a/md/UBERON/83/UBERON_3010283.md +++ b/md/UBERON/83/UBERON_3010283.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010283 * *Label* = obsolete animal blastomere - * *Definition* = Pigmented, smaller blastomere of the animal (upper) hemisphere of the cleaving embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Pigmented, smaller blastomere of the animal (upper) hemisphere of the cleaving embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * micromere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010283] + * micromere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010283 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/83/UBERON_3010583.md b/md/UBERON/83/UBERON_3010583.md index 7b888d082c..c8554e1f69 100644 --- a/md/UBERON/83/UBERON_3010583.md +++ b/md/UBERON/83/UBERON_3010583.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010583 * *Label* = basibranchial I - * *Definition* = Bilaterally unpaired ventral element with which articulates with lateral paired elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:DBW] + * *Definition* = Bilaterally unpaired ventral element with which articulates with lateral paired elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:DBW ] ## Synonyms - * Copula I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010583] + * Copula I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010583 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3010683.md b/md/UBERON/83/UBERON_3010683.md index cc2e18fa7f..6ded21500c 100644 --- a/md/UBERON/83/UBERON_3010683.md +++ b/md/UBERON/83/UBERON_3010683.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_3010783.md b/md/UBERON/83/UBERON_3010783.md index d29d9d7ee6..f7af7719c1 100644 --- a/md/UBERON/83/UBERON_3010783.md +++ b/md/UBERON/83/UBERON_3010783.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010783 * *Label* = m. oblique externus - * *Definition* = Originates on the posterior margin of the suprascapula and the epaxial fascia and inserts ventrally on the lateral fascia of the M. rectus abdominus and the ilial shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Originates on the posterior margin of the suprascapula and the epaxial fascia and inserts ventrally on the lateral fascia of the M. rectus abdominus and the ilial shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_4200083.md b/md/UBERON/83/UBERON_4200083.md index 92efff049c..6e47973837 100644 --- a/md/UBERON/83/UBERON_4200083.md +++ b/md/UBERON/83/UBERON_4200083.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_4200183.md b/md/UBERON/83/UBERON_4200183.md index 726ec20592..9d17aef1c6 100644 --- a/md/UBERON/83/UBERON_4200183.md +++ b/md/UBERON/83/UBERON_4200183.md @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/83/UBERON_4300083.md b/md/UBERON/83/UBERON_4300083.md new file mode 100644 index 0000000000..1684768b5a --- /dev/null +++ b/md/UBERON/83/UBERON_4300083.md @@ -0,0 +1,34 @@ + +## Class : propterygium element + + * *IRI* = http://purl.obolibrary.org/obo/UBERON_4300083 + * *Label* = propterygium element + +## Synonyms + + +## Cross-references + + +## Subsets + + +## Superclasses + + * [pectoral fin proximal radial element](../../UBERON/87/UBERON_2101587.md) + +## Equivalencies + + +## Other Logical Axioms + + +## Other Annotations + + * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = WD + +## Usage + + +## External Comments + diff --git a/md/UBERON/84/UBERON_0000084.md b/md/UBERON/84/UBERON_0000084.md index c7ec6c1e73..d4b5fc04a1 100644 --- a/md/UBERON/84/UBERON_0000084.md +++ b/md/UBERON/84/UBERON_0000084.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000084 * *Label* = ureteric bud - * *Definition* = An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010979[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:19828308[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=36855&atid=440764] + * *Definition* = An epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010979, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:19828308, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=36855&atid=440764 ] ## Synonyms - * diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001646] - * diverticulum metanephricum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ureteric_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gemma ureterica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ureteric_bud[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metanephric bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001646] - * metanephric diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metanephros#Metanephros] + * diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001646 ] + * diverticulum metanephricum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ureteric_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gemma ureterica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ureteric_bud, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metanephric bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001646 ] + * metanephric diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metanephros#Metanephros ] * ureteric ampulla - * ureteric diverticulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000541] + * ureteric diverticulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000541 ] ## Cross-references @@ -24,7 +24,7 @@ * EMAPA:17209 * EMAPA:17376 * SCTID:361528000 - * UMLS:C1284058 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metanephric_Diverticulum] + * UMLS:C1284058 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metanephric_Diverticulum ] * VHOG:0000541 * Wikipedia:Ureteric_bud * ncithesaurus:Metanephric_Diverticulum @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Outgrowth of the mesonephric duct that penetrates the metanephric mesoderm and forms the ureter, renal pelvis, major and minor calyces and collecting ducts[VHOG:0000541]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The first embryonic hint of a metanephros is the formation of the metanephric duct that appears as a ureteric diverticulum arising at the base of preexisting mesonephric duct. The ureteric diverticulum grows dorsally into the posterior region of the nephric ridge. Here it enlarges and stimulates the growth of metanephric tubules that come to make up the metanephric kidney. The metanephros becomes the adult kidney of amniotes, and the metanephric duct is usually called the ureter.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0000484.md b/md/UBERON/84/UBERON_0000484.md index 709615207d..d379a96859 100644 --- a/md/UBERON/84/UBERON_0000484.md +++ b/md/UBERON/84/UBERON_0000484.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000484 * *Label* = simple cuboidal epithelium - * *Definition* = Unilaminar epithelium that consists of a single layer of cuboidal cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Simple_cuboidal_epithelium] + * *Definition* = Unilaminar epithelium that consists of a single layer of cuboidal cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Simple_cuboidal_epithelium ] * *Comment* = Editor notes: needs to be synchronized with CL - there is no distinct cuboidal cell in CL ## Synonyms @@ -20,7 +20,7 @@ * FMA:45566 * HAO:0000067 * TAO:0001497 - * UMLS:C0836134 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Simple_Cuboidal_Epithelium] + * UMLS:C0836134 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Simple_Cuboidal_Epithelium ] * Wikipedia:Simple_cuboidal_epithelium * XAO:0004009 * ZFA:0001497 @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0000984.md b/md/UBERON/84/UBERON_0000984.md index ab32ce904f..c0736cd29f 100644 --- a/md/UBERON/84/UBERON_0000984.md +++ b/md/UBERON/84/UBERON_0000984.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000984 * *Label* = imaginal disc-derived wing - * *Definition* = A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg] + * *Definition* = A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg ] * *Comment* = TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma ## Synonyms - * wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004729[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004729, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * adult mesothoracic wing * adult metathoracic wing * thoracic wing - * thorax wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thorax wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [imaginal disc](../../UBERON/39/UBERON_0000939.md) and [wing](../../UBERON/23/UBERON_0000023.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001084.md b/md/UBERON/84/UBERON_0001084.md index b86a86493a..0028056d32 100644 --- a/md/UBERON/84/UBERON_0001084.md +++ b/md/UBERON/84/UBERON_0001084.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001084 * *Label* = skin of head - * *Definition* = A zone of skin that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - distinguish between entire skin of region and arbitrary zone of skin on region ## Synonyms - * adult head zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult head zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * head skin - * head zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * head zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:24756 * MA:0000582 * SCTID:181484006 - * UMLS:C0205029 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Head_Skin] + * UMLS:C0205029 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Head_Skin ] * ncithesaurus:Head_Skin ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001184.md b/md/UBERON/84/UBERON_0001184.md index b5cb21ed65..2a09538b9a 100644 --- a/md/UBERON/84/UBERON_0001184.md +++ b/md/UBERON/84/UBERON_0001184.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001184 * *Label* = renal artery - * *Definition* = One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_artery] + * *Definition* = One of two laterally paired arteries that supplies the kidneys. These are large arteries that branch from the dorsal aorta in primitive vertebrates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_artery ] * *Comment* = Editor notes: renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability. ## Synonyms * renal arterial tree - * arteria renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * renal arteries [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * arteria renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * renal arteries [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,7 +30,7 @@ * RETIRED_EHDAA2:0001600 * SCTID:181339005 * TAO:0000420 - * UMLS:C0035065 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Artery] + * UMLS:C0035065 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Artery ] * Wikipedia:Renal_artery * ZFA:0000420 * galen:RenalArtery @@ -52,7 +52,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 0.74 mm using ultrasound, but 5.68 1.19 mm using angiography. [WP,unvetted].[Wikipedia] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001184 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001284.md b/md/UBERON/84/UBERON_0001284.md index d737b73213..4daf40f669 100644 --- a/md/UBERON/84/UBERON_0001284.md +++ b/md/UBERON/84/UBERON_0001284.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001284 * *Label* = renal column - * *Definition* = The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_column] + * *Definition* = The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_column ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * kidney column [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001651] + * kidney column [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001651 ] * renal column of bertini - * columnae renales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Renal_column[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * columnae renales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Renal_column, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001384.md b/md/UBERON/84/UBERON_0001384.md index f48ee90f1e..bc041157da 100644 --- a/md/UBERON/84/UBERON_0001384.md +++ b/md/UBERON/84/UBERON_0001384.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001384 * *Label* = primary motor cortex - * *Definition* = The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_143555] - * *Comment* = TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + MA-modified] + * *Definition* = The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_143555 ] + * *Comment* = TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = MA-modified ] ## Synonyms - * motor cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:224854] - * Rolando's area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004348] - * excitable area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004348] - * gyrus precentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_motor_cortex[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial orbital cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] - * motor area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004348] - * prefrontal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000798[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_motor_cortex] - * primary motor area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MOp] - * somatic motor areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] - * somatomotor areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] + * motor cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:224854 ] + * Rolando's area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004348 ] + * excitable area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004348 ] + * gyrus precentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_motor_cortex, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial orbital cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] + * motor area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004348 ] + * prefrontal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000798, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_motor_cortex ] + * primary motor area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MOp ] + * somatic motor areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] + * somatomotor areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] ## Cross-references @@ -33,7 +33,7 @@ * NIF_GrossAnatomy:nlx_143555 * NeuroNames:1910 * SCTID:11931008 - * UMLS:C0026607 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Motor_Cortex] + * UMLS:C0026607 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Motor_Cortex ] * Wikipedia:Primary_motor_cortex * http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the cerebral cortex that receives projections from the motor thalamus and which projects to motor neurons in the brainstem and spinal cord. The motor cortex corresponds to Brodmann's area 4 (MM). The primary motor cortex, or M1, is located on the precentral gyrus and on the anterior paracentral lobule on the medial surface of the brain. Of the three motor cortex areas, stimulation of the primary motor cortex requires the least amount of electrical current to elicit a movement. http://neuroscience.uth.tmc.edu/s3/chapter03.html * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the area of the frontal lobe that is involved with integration of voluntary movements and with speech.[MP] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001484.md b/md/UBERON/84/UBERON_0001484.md index 0ba51185d1..828ab6d370 100644 --- a/md/UBERON/84/UBERON_0001484.md +++ b/md/UBERON/84/UBERON_0001484.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001484 * *Label* = articular capsule - * *Definition* = An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_capsule] + * *Definition* = An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_capsule ] * *Comment* = AO notes: check ncita ## Synonyms - * capsula articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:34836[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * capsula articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:34836, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fibrous capsule of joint * joint capsule * joint fibrous capsule - * capsulae articulares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Articular_capsule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * capsulae articulares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Articular_capsule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0001519 * MESH:A02.835.583.443 * SCTID:182238002 - * UMLS:C0206207 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Joint_Capsule] + * UMLS:C0206207 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Joint_Capsule ] * Wikipedia:Articular_capsule * galen:JointCapsule * http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001584.md b/md/UBERON/84/UBERON_0001584.md index 9ea6ad32d9..3fe9091b84 100644 --- a/md/UBERON/84/UBERON_0001584.md +++ b/md/UBERON/84/UBERON_0001584.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001584 * *Label* = left subclavian artery - * *Definition* = In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_artery] + * *Definition* = In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA * SCTID:244245001 - * UMLS:C0226262 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Subclavian_Artery] + * UMLS:C0226262 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Subclavian_Artery ] * Wikipedia:Subclavian_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png * ncithesaurus:Left_Subclavian_Artery @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001684.md b/md/UBERON/84/UBERON_0001684.md index 397e316668..2d04852d82 100644 --- a/md/UBERON/84/UBERON_0001684.md +++ b/md/UBERON/84/UBERON_0001684.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001684 * *Label* = mandible - * *Definition* = A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Human_mandible[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandible] + * *Definition* = A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Human_mandible, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandible ] * *Comment* = Editor notes: consider merging with dentary - for now we make it a mammal-specific subclass. Terminology notes: 'mandible' also refers to either the upper OR lower part of the beak in birds. AO notes: Note in ZFA 'mandible' is a syn for the ventral mandibular arch, which is a portion of the 1st pharyngeal arch; however the term 'mandibular symphysis' refers to the dentary ## Synonyms @@ -11,12 +11,12 @@ * inferior maxillary bone * mammaliam mandible * mandibulla - * lower jaw [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lower jaw bone [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * lower mandibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * mandibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001748] - * mandibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Human_mandible[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mandibular series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001273] + * lower jaw [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lower jaw bone [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * lower mandibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * mandibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001748 ] + * mandibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Human_mandible, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mandibular series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001273 ] ## Cross-references @@ -31,7 +31,7 @@ * MA:0001487 * MESH:A02.835.232.781.324.502.632 * SCTID:181812008 - * UMLS:C0024687 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mandible] + * UMLS:C0024687 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mandible ] * Wikipedia:Human_mandible * galen:Mandible * http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png @@ -57,8 +57,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mandibular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001784.md b/md/UBERON/84/UBERON_0001784.md index 24f5d5d54a..50665fd2d4 100644 --- a/md/UBERON/84/UBERON_0001784.md +++ b/md/UBERON/84/UBERON_0001784.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000053 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000054 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001784 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_0001884.md b/md/UBERON/84/UBERON_0001884.md index afa4731a26..d6d59778fb 100644 --- a/md/UBERON/84/UBERON_0001884.md +++ b/md/UBERON/84/UBERON_0001884.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001884 * *Label* = phrenic nerve - * *Definition* = A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000728] + * *Definition* = A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000728 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * diaphragmatic nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001063] - * nervus phrenicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001063] - * nervus phrenicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Phrenic_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * phrenic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001063] + * diaphragmatic nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001063 ] + * nervus phrenicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001063 ] + * nervus phrenicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Phrenic_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * phrenic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001063 ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A08.800.800.720.150.700 * OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA * SCTID:280344009 - * UMLS:C0031774 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Phrenic_Nerve] + * UMLS:C0031774 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Phrenic_Nerve ] * VHOG:0000728 * Wikipedia:Phrenic_nerve * http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A nerve that arises from the caudal cervical nerves and is primarily the motor nerve of the diaphragm but also sends sensory fibers to the pericardium. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0001984.md b/md/UBERON/84/UBERON_0001984.md index 5d5a987b07..c9e8e2643a 100644 --- a/md/UBERON/84/UBERON_0001984.md +++ b/md/UBERON/84/UBERON_0001984.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001984 * *Label* = crypt of lieberkuhn of large intestine - * *Definition* = A crypt of lieberkuhn that is part of a large intestine [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A crypt of lieberkuhn that is part of a large intestine [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * intestinal gland of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * intestinal gland of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * large intestinal crypt of lieberkuhn * large intestine crypt of lieberkuhn - * large intestine intestinal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestine lieberkuhn crypt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lieberkuhn crypt of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * large intestine intestinal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestine lieberkuhn crypt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lieberkuhn crypt of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:63622 * MA:0001544 - * UMLS:C1179777 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn] + * UMLS:C1179777 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn ] * ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002084.md b/md/UBERON/84/UBERON_0002084.md index f3db9a1642..3459392332 100644 --- a/md/UBERON/84/UBERON_0002084.md +++ b/md/UBERON/84/UBERON_0002084.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002084 * *Label* = heart left ventricle - * *Definition* = Left cardiac chamber which is continuous with the aorta.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_ventricle] + * *Definition* = Left cardiac chamber which is continuous with the aorta.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_ventricle ] ## Synonyms * cardiac left ventricle * left cardiac ventricle - * left ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7101] + * left ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7101 ] * left ventricle of heart - * ventriculus sinister cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventriculus sinister cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA * SCTID:244385005 - * UMLS:C0225897 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Ventricle] + * UMLS:C0225897 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Ventricle ] * VHOG:0000718 * Wikipedia:Left_ventricle * galen:LeftVentricle @@ -45,7 +45,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The vertebrate heart initially forms as a tube from a population of precursor cells termed the first heart field (FHF). Cells from the adjacent second heart field (SHF) are then progressively added to the developing heart. In avian and mammalian hearts, the FHF contributes mainly to the left ventricle, whereas the SHF gives rise to the outflow tract and large portions of the right ventricle and atria. Both fields arise from common mesodermal progenitors, although the detailed lineage relationships between FHF and SHF remain uncertain.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002184.md b/md/UBERON/84/UBERON_0002184.md index ab08dc13f5..33c5546f8a 100644 --- a/md/UBERON/84/UBERON_0002184.md +++ b/md/UBERON/84/UBERON_0002184.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002184 * *Label* = segmental bronchus - * *Definition* = The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Segmental_bronchus] + * *Definition* = The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Segmental_bronchus ] ## Synonyms @@ -20,7 +20,7 @@ * MA:0000439 * OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA * SCTID:245513001 - * UMLS:C0444439 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Segmental_Bronchus] + * UMLS:C0444439 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Segmental_Bronchus ] * VHOG:0001446 * Wikipedia:Segmental_bronchus * http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg @@ -46,8 +46,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002184 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002284.md b/md/UBERON/84/UBERON_0002284.md index 65111eb9b2..93d696471e 100644 --- a/md/UBERON/84/UBERON_0002284.md +++ b/md/UBERON/84/UBERON_0002284.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002284 * *Label* = hyponychium - * *Definition* = Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyponychium] + * *Definition* = Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyponychium ] * *Comment* = Taxon notes: Extended in mouse compared to human[PMID:23408541] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002384.md b/md/UBERON/84/UBERON_0002384.md index 2f739fca9e..ac4a2bcb30 100644 --- a/md/UBERON/84/UBERON_0002384.md +++ b/md/UBERON/84/UBERON_0002384.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002384 * *Label* = connective tissue - * *Definition* = Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000017[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000017, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = AO notes: MA also has set of connective tissues ## Synonyms - * portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9640] + * portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9640 ] * textus connectivus - * Bindegewebe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000421] + * Bindegewebe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000421 ] ## Cross-references @@ -27,7 +27,7 @@ * OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA * SCTID:361919005 * TAO:0001641 - * UMLS:C0009780 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Connective_Tissue] + * UMLS:C0009780 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Connective_Tissue ] * VSAO:0000017 * XAO:0001017 * ZFA:0001632 @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002484.md b/md/UBERON/84/UBERON_0002484.md index 095d963dd5..070340062f 100644 --- a/md/UBERON/84/UBERON_0002484.md +++ b/md/UBERON/84/UBERON_0002484.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002484 * *Label* = bone marrow cavity - * *Definition* = the central cavity of bone shafts where red bone marrow and/or yellow bone marrow (adipose tissue) is stored; hence, the medullary cavity is also known as the marrow cavity. Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovaryry_cavity] + * *Definition* = the central cavity of bone shafts where red bone marrow and/or yellow bone marrow (adipose tissue) is stored; hence, the medullary cavity is also known as the marrow cavity. Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovaryry_cavity ] * *Comment* = AO notes: not clear if the FMA intends to have two classes. MP:0000065: "the medullary cavities of the bones.". NCITA also has "medullary bone" ## Synonyms * cavity of cancellous bone - * marrow cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83698] - * medullary cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83698] + * marrow cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83698 ] + * medullary cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83698 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002584.md b/md/UBERON/84/UBERON_0002584.md index 64d7a1e742..93b65c4069 100644 --- a/md/UBERON/84/UBERON_0002584.md +++ b/md/UBERON/84/UBERON_0002584.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002584 * *Label* = regional part of vestibular nuclear complex - * *Definition* = A regional part of brain that is part of a vestibular nuclear complex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a vestibular nuclear complex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of vestibular nuclear complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1080] - * vestibular nuclear complex segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71267] + * segment of vestibular nuclear complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1080 ] + * vestibular nuclear complex segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71267 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002684.md b/md/UBERON/84/UBERON_0002684.md index 6d95017c11..07d4a577ab 100644 --- a/md/UBERON/84/UBERON_0002684.md +++ b/md/UBERON/84/UBERON_0002684.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002684 * *Label* = nucleus raphe obscurus - * *Definition* = The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_obscurus] + * *Definition* = The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_obscurus ] ## Synonyms - * nucleus raphes obscurus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72585[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * obscurus raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72585] - * raphe obscurus nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72585] - * nucleus raphC) obscurus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RO] - * nucleus raphes obscurus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nucleus_raphe_obscurus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * retro-olivary cell group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RO] + * nucleus raphes obscurus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72585, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * obscurus raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72585 ] + * raphe obscurus nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72585 ] + * nucleus raphC) obscurus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RO ] + * nucleus raphes obscurus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nucleus_raphe_obscurus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * retro-olivary cell group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RO ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:72585 * MA:0002981 * NIF_GrossAnatomy:birnlex_1369 - * NeuroNames:740 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1369] - * UMLS:C0175516 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1369] + * NeuroNames:740 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1369 ] + * UMLS:C0175516 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1369 ] * Wikipedia:Nucleus_raphe_obscurus * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002784.md b/md/UBERON/84/UBERON_0002784.md index 88182f8370..9026f9c99f 100644 --- a/md/UBERON/84/UBERON_0002784.md +++ b/md/UBERON/84/UBERON_0002784.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002784 * *Label* = regional part of diencephalon - * *Definition* = A regional part of brain that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalon segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62005] + * diencephalon segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62005 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002784 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002884.md b/md/UBERON/84/UBERON_0002884.md index ad8904e73c..5d19ba3a43 100644 --- a/md/UBERON/84/UBERON_0002884.md +++ b/md/UBERON/84/UBERON_0002884.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002884 * *Label* = intercalated amygdaloid nuclei - * *Definition* = Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2683] + * *Definition* = Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2683 ] ## Synonyms - * intercalated amygdaloid nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61868] - * intercalated amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61868] - * intercalated masses of nucleus amygdaloideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61868] - * intercalated nuclei of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61868] - * intercalated nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2683] - * massa intercalata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2683] - * massa intercalata of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2683] - * Intercalated amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IA] - * Intercalated cell islands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:I] - * Intercalated nuclei of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IA] - * Intercalated nuclei of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:I] - * Internuclear area, hypothalamic periventricular region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:I] - * intercalated amygdalar nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:250] - * intercalated masses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:250] - * intercalated nuclei amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:250] - * intercalated nuclei of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:I] - * nucleus amygdalae intercalatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:250[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus intercalatus amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:250[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intercalated amygdaloid nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61868 ] + * intercalated amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61868 ] + * intercalated masses of nucleus amygdaloideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61868 ] + * intercalated nuclei of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61868 ] + * intercalated nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2683 ] + * massa intercalata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2683 ] + * massa intercalata of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2683 ] + * Intercalated amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IA ] + * Intercalated cell islands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:I ] + * Intercalated nuclei of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:I ] + * Intercalated nuclei of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IA ] + * Internuclear area, hypothalamic periventricular region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:I ] + * intercalated amygdalar nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:250 ] + * intercalated masses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:250 ] + * intercalated nuclei amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:250 ] + * intercalated nuclei of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:I ] + * nucleus amygdalae intercalatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:250, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus intercalatus amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:250, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,8 @@ * FMA:61868 * MA:0002925 * NIF_GrossAnatomy:birnlex_2683 - * NeuroNames:250 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2683] - * UMLS:C0262259 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2683] + * NeuroNames:250 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2683 ] + * UMLS:C0262259 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2683 ] ## Subsets @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0002984.md b/md/UBERON/84/UBERON_0002984.md index 233711dc47..1fc369c7e7 100644 --- a/md/UBERON/84/UBERON_0002984.md +++ b/md/UBERON/84/UBERON_0002984.md @@ -6,23 +6,23 @@ ## Synonyms - * lateral dorsal nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62176] - * lateral dorsal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62176] - * laterodorsal nucleus nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * laterodorsal nucleus thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * laterodorsal nucleus, superficial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62176] - * laterodorsal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62176] - * nucleus dorsalis lateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62176[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus dorsalis superficialis (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * nucleus dorsolateralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * nucleus lateralis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * nucleus lateralis dorsalis of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * nucleus lateralis dorsalis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * nucleus lateralis thalami dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_838] - * LD [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_838[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral dorsal nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:326] - * lateral orbital cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LO] - * laterodorsal nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:326] + * lateral dorsal nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62176 ] + * lateral dorsal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62176 ] + * laterodorsal nucleus nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * laterodorsal nucleus thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * laterodorsal nucleus, superficial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62176 ] + * laterodorsal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62176 ] + * nucleus dorsalis lateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62176, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus dorsalis superficialis (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * nucleus dorsolateralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * nucleus lateralis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * nucleus lateralis dorsalis of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * nucleus lateralis dorsalis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * nucleus lateralis thalami dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_838 ] + * LD [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_838, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral dorsal nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:326 ] + * lateral orbital cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LO ] + * laterodorsal nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:326 ] ## Cross-references @@ -36,9 +36,9 @@ * EV:0100211 * FMA:62176 * NIF_GrossAnatomy:birnlex_838 - * NeuroNames:326 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_838] + * NeuroNames:326 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_838 ] * SCTID:279154004 - * UMLS:C0228342 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_838] + * UMLS:C0228342 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_838 ] ## Subsets @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003084.md b/md/UBERON/84/UBERON_0003084.md index aa00fcdacb..4c6ee41124 100644 --- a/md/UBERON/84/UBERON_0003084.md +++ b/md/UBERON/84/UBERON_0003084.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003084 * *Label* = heart primordium - * *Definition* = Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = editor note: should probably be merged with heart rudiment. ## Synonyms @@ -15,7 +15,7 @@ * AAO:0011044 * BTO:0001887 * TAO:0000028 - * UMLS:C1514450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordium_of_the_Heart] + * UMLS:C1514450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordium_of_the_Heart ] * XAO:0000336 * ZFA:0000028 * ncithesaurus:Primordium_of_the_Heart @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003184.md b/md/UBERON/84/UBERON_0003184.md index 6aed41dd2e..01d40f6b5c 100644 --- a/md/UBERON/84/UBERON_0003184.md +++ b/md/UBERON/84/UBERON_0003184.md @@ -7,7 +7,7 @@ ## Synonyms - * mesothoracic sternal apophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004619] + * mesothoracic sternal apophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004619 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004619 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000547 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003184 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_0003284.md b/md/UBERON/84/UBERON_0003284.md index a9d32d5236..9735545223 100644 --- a/md/UBERON/84/UBERON_0003284.md +++ b/md/UBERON/84/UBERON_0003284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003284 * *Label* = mesentery of midgut - * *Definition* = A mesentery that is part of a midgut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a midgut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midgut mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * midgut mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003384.md b/md/UBERON/84/UBERON_0003384.md index f214ea9359..4f7f9e0928 100644 --- a/md/UBERON/84/UBERON_0003384.md +++ b/md/UBERON/84/UBERON_0003384.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003384 * *Label* = skeletal muscle tissue of pharynx - * *Definition* = A portion of skeletal muscle tissue that is part of a pharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a pharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pharynx skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pharynx skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pharynx skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pharynx skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003484.md b/md/UBERON/84/UBERON_0003484.md index 787551dd70..9731c034e0 100644 --- a/md/UBERON/84/UBERON_0003484.md +++ b/md/UBERON/84/UBERON_0003484.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003484 * *Label* = eye sebaceous gland - * *Definition* = A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A sebaceous gland that is part of a camera-type eye. Example: a tarsal gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * camera-type eye sebaceous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sebaceous gland of camera-type eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sebaceous gland of vertebrate eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vertebrate eye sebaceous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * camera-type eye sebaceous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sebaceous gland of camera-type eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sebaceous gland of vertebrate eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vertebrate eye sebaceous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003584.md b/md/UBERON/84/UBERON_0003584.md index 187696ce9b..9291008cc9 100644 --- a/md/UBERON/84/UBERON_0003584.md +++ b/md/UBERON/84/UBERON_0003584.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003584 * *Label* = mammary gland connective tissue - * *Definition* = the fibrous supportive tissue of the mammary gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009507] + * *Definition* = the fibrous supportive tissue of the mammary gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009507 ] ## Synonyms - * connective tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammary gland](../../UBERON/11/UBERON_0001911.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003684.md b/md/UBERON/84/UBERON_0003684.md index 22b63a7bf4..bd3482c20f 100644 --- a/md/UBERON/84/UBERON_0003684.md +++ b/md/UBERON/84/UBERON_0003684.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003684 * *Label* = abdominal cavity - * *Definition* = body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_cavity] + * *Definition* = body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_cavity ] ## Synonyms - * cavity of abdominal compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12266] - * cavity of compartment of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12266] - * space of abdominal compartment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12266] - * cavitas abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:17] - * cavitas abdominis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_cavity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavity of abdominal compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12266 ] + * cavity of compartment of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12266 ] + * space of abdominal compartment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12266 ] + * cavitas abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:17 ] + * cavitas abdominis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_cavity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A01.047.025 * OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA * SCTID:361294009 - * UMLS:C0230168 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abdominal_Cavity] + * UMLS:C0230168 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abdominal_Cavity ] * Wikipedia:Abdominal_cavity * galen:AbdominalCavity * http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003884.md b/md/UBERON/84/UBERON_0003884.md index 1d2ebbde98..a9ef6e3c7a 100644 --- a/md/UBERON/84/UBERON_0003884.md +++ b/md/UBERON/84/UBERON_0003884.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003884 * *Label* = CA4 field of hippocampus - * *Definition* = The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:CA4_Field_of_the_Cornu_Ammonis] + * *Definition* = The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:CA4_Field_of_the_Cornu_Ammonis ] * *Comment* = consider obsoleting. consider - CA3c, hilus ## Synonyms @@ -13,11 +13,11 @@ * CA4 field of Ammon's horn * CA4 field of cornu ammonis * hippocampus CA4 - * regio IV cornus ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75741[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio IV hippocampi proprii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75741[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * regio IV cornus ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75741, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio IV hippocampi proprii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75741, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * region 4 of Ammon's horn - * region IV of ammon's horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75741] - * region IV of hippocampus proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75741] + * region IV of ammon's horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75741 ] + * region IV of hippocampus proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75741 ] ## Cross-references @@ -26,7 +26,7 @@ * FMA:75741 * MA:0000953 * NeuroNames:181 - * UMLS:C2328406 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:CA4_Field_of_the_Cornu_Ammonis] + * UMLS:C2328406 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:CA4_Field_of_the_Cornu_Ammonis ] * ncithesaurus:CA4_Field_of_the_Cornu_Ammonis ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0003984.md b/md/UBERON/84/UBERON_0003984.md index b0cd124fac..e14a521008 100644 --- a/md/UBERON/84/UBERON_0003984.md +++ b/md/UBERON/84/UBERON_0003984.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003984 * *Label* = uterine tube infundibulum - * *Definition* = the funnel-like expansion of the abdominal extremity of the uterine tube[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009466[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infundibulum_of_uterine_tube] + * *Definition* = the funnel-like expansion of the abdominal extremity of the uterine tube[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009466, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infundibulum_of_uterine_tube ] ## Synonyms - * infundibulum of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18307] - * infundibulum of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18307] - * infundibulum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * infundibulum of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18307] - * infundibulum tubae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Infundibulum_of_uterine_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * infundibulum of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18307 ] + * infundibulum of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18307 ] + * infundibulum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * infundibulum of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18307 ] + * infundibulum tubae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Infundibulum_of_uterine_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The third part of the uterine tube is the infundibulum. It terminates with the ostium of Fallopian tube, surrounded by fimbriae, one of which is attached to the ovary[Wikipedia:Infundibulum_of_uterine_tube]. * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8782 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004084.md b/md/UBERON/84/UBERON_0004084.md index a3abf7de00..fe9d1180c6 100644 --- a/md/UBERON/84/UBERON_0004084.md +++ b/md/UBERON/84/UBERON_0004084.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004084 * *Label* = genital labium - * *Definition* = the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003520] + * *Definition* = the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003520 ] ## Synonyms - * genital labia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * labia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * labium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002464] + * genital labia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * labia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * labium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002464 ] ## Cross-references * CALOHA:TS-2210 * EMAPA:30837 * MA:0002464 - * UMLS:C0227759 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Labium] + * UMLS:C0227759 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Labium ] * galen:Labia * ncithesaurus:Labium @@ -39,8 +39,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = labial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004184.md b/md/UBERON/84/UBERON_0004184.md index ddcac7a13f..9622902cd0 100644 --- a/md/UBERON/84/UBERON_0004184.md +++ b/md/UBERON/84/UBERON_0004184.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004184 * *Label* = prostate gland stroma - * *Definition* = The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060741] + * *Definition* = The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060741 ] * *Comment* = TODO - check also FMA Stroma of glandular part of prostate ## Synonyms - * prostate stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45719] - * stroma of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stroma of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stroma of glandular part of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74349[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * prostate stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45719 ] + * stroma of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stroma of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stroma of glandular part of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74349, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:45719 * MA:0002912 - * UMLS:C1521760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Stroma] + * UMLS:C1521760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Stroma ] * ncithesaurus:Prostatic_Stroma ## Subsets @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005084 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004184 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004384.md b/md/UBERON/84/UBERON_0004384.md index 95ea071395..b11f9ba86a 100644 --- a/md/UBERON/84/UBERON_0004384.md +++ b/md/UBERON/84/UBERON_0004384.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004384 * *Label* = epiphysis of femur - * *Definition* = An epiphysis that is part of a femur [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a femur [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * femoral epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32838] + * femoral epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32838 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [femur](../../UBERON/81/UBERON_0000981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004484.md b/md/UBERON/84/UBERON_0004484.md index 3924d76a94..bda8784eaf 100644 --- a/md/UBERON/84/UBERON_0004484.md +++ b/md/UBERON/84/UBERON_0004484.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = FMA:22596 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004484 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_0004684.md b/md/UBERON/84/UBERON_0004684.md index 3889f715b4..e6edc4a1d6 100644 --- a/md/UBERON/84/UBERON_0004684.md +++ b/md/UBERON/84/UBERON_0004684.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004684 * *Label* = raphe nuclei - * *Definition* = The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090205[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764] + * *Definition* = The raphe nuclei are thin plates of cells in and immediately adjacent to the sagittal plane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090205, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764 ] * *Comment* = we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei' ## Synonyms - * nuclei raphes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84017[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84017] - * raphe nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090205] - * raphe nuclei set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84017] - * Raphe of mesenchephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:RA] - * nuclei raphes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Raphe_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe cluster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Raphe_nuclei] - * raphe nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001429] - * set of raphe nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:84017] + * nuclei raphes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84017, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84017 ] + * raphe nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090205 ] + * raphe nuclei set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84017 ] + * Raphe of mesenchephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:RA ] + * nuclei raphes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Raphe_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe cluster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Raphe_nuclei ] + * raphe nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001429 ] + * set of raphe nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:84017 ] ## Cross-references @@ -26,7 +26,7 @@ * NIF_GrossAnatomy:nlx_anat_20090205 * NeuroNames:2495 * TAO:0001429 - * UMLS:C0034671 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Raphe_Nuclei] + * UMLS:C0034671 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Raphe_Nuclei ] * Wikipedia:Raphe_nuclei * ZFA:0001429 * http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004784.md b/md/UBERON/84/UBERON_0004784.md index 3b582ab399..b29133039e 100644 --- a/md/UBERON/84/UBERON_0004784.md +++ b/md/UBERON/84/UBERON_0004784.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004784 * *Label* = heart ventricle wall - * *Definition* = An anatomical wall that is part of a cardiac ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a cardiac ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anatomical wall of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardiac ventricle wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * heart ventricle anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower chamber of heart wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricle of heart wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventricular wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13884] - * wall of cardiac ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of heart ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of lower chamber of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of ventricle of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002791] + * anatomical wall of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardiac ventricle wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * heart ventricle anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower chamber of heart wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricle of heart wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventricular wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13884 ] + * wall of cardiac ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of heart ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of lower chamber of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of ventricle of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002791 ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac ventricle](../../UBERON/82/UBERON_0002082.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004784 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004884.md b/md/UBERON/84/UBERON_0004884.md index 38ee5b2ffc..581d98c36b 100644 --- a/md/UBERON/84/UBERON_0004884.md +++ b/md/UBERON/84/UBERON_0004884.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004884 * *Label* = lobar bronchus mesenchyme - * *Definition* = the mass of tissue composed of mesenchymal cells in the lobar bronchus.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060483] + * *Definition* = the mass of tissue composed of mesenchymal cells in the lobar bronchus.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060483 ] ## Synonyms - * mesenchyme of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mesenchyme of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0004984.md b/md/UBERON/84/UBERON_0004984.md index d1d778e4e2..d98f09e453 100644 --- a/md/UBERON/84/UBERON_0004984.md +++ b/md/UBERON/84/UBERON_0004984.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004984 * *Label* = mucosa of seminal vesicle - * *Definition* = A mucosa that is part of a seminal vesicle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a seminal vesicle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of seminal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of seminal vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal gland organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal vesicle mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal vesicle mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal vesicle mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * seminal vesicle organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa glandulae vesiculosae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19405[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mucosa of organ of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of seminal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of seminal vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal gland organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal vesicle mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal vesicle mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal vesicle mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * seminal vesicle organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa glandulae vesiculosae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19405, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [seminal vesicle](../../UBERON/98/UBERON_0000998.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005184.md b/md/UBERON/84/UBERON_0005184.md index 2f88dda2c6..700e4ef66c 100644 --- a/md/UBERON/84/UBERON_0005184.md +++ b/md/UBERON/84/UBERON_0005184.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005184 * *Label* = hair medulla - * *Definition* = Innermost layer of the hair shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovary_(hair)] + * *Definition* = Innermost layer of the hair shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovary_(hair) ] ## Synonyms - * medulla of hair shaft [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004671] + * medulla of hair shaft [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004671 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005184 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005284.md b/md/UBERON/84/UBERON_0005284.md index 882f4d2252..b108a3dc9e 100644 --- a/md/UBERON/84/UBERON_0005284.md +++ b/md/UBERON/84/UBERON_0005284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005284 * *Label* = brain vasculature - * *Definition* = A vasculature that is part of a brain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vasculature that is part of a brain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * vasculature of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242007] + * vasculature of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242007 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005384.md b/md/UBERON/84/UBERON_0005384.md index a71503197a..f8b10630d3 100644 --- a/md/UBERON/84/UBERON_0005384.md +++ b/md/UBERON/84/UBERON_0005384.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005384 * *Label* = nasal cavity epithelium - * *Definition* = An epithelium that is part of a nasal cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a nasal cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nasal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63140] - * nasal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001324] + * nasal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63140 ] + * nasal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001324 ] ## Cross-references @@ -18,7 +18,7 @@ * EMAPA:17605 * FMA:63140 * MA:0001324 - * UMLS:C1709151 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Cavity_Epithelium] + * UMLS:C1709151 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Cavity_Epithelium ] * VHOG:0000501 * ncithesaurus:Nasal_Cavity_Epithelium @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [located_in](../../RO/25/RO_0001025.md) some [nasal cavity](../../UBERON/07/UBERON_0001707.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005484.md b/md/UBERON/84/UBERON_0005484.md index ab87467974..ef42165aa9 100644 --- a/md/UBERON/84/UBERON_0005484.md +++ b/md/UBERON/84/UBERON_0005484.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005484 * *Label* = tricuspid valve leaflet - * *Definition* = A cardiac valve leaflet that is part of a tricuspid valve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiac valve leaflet that is part of a tricuspid valve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * leaflet of tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7237] - * tricuspid valve leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7237] - * tricuspid valve leaflets [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000821] - * tricuspid valvular leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7237] + * leaflet of tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7237 ] + * tricuspid valve leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7237 ] + * tricuspid valve leaflets [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000821 ] + * tricuspid valvular leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7237 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac valve leaflet](../../UBERON/41/UBERON_0011741.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tricuspid valve](../../UBERON/34/UBERON_0002134.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005584.md b/md/UBERON/84/UBERON_0005584.md index 0b203f1b84..8271d1d582 100644 --- a/md/UBERON/84/UBERON_0005584.md +++ b/md/UBERON/84/UBERON_0005584.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005584 * *Label* = rhombomere 6 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000825] + * roof plate rhombomere 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000825 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 6](../../UBERON/19/UBERON_0005519.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005884.md b/md/UBERON/84/UBERON_0005884.md index 41bc195a9e..7f9c3930bf 100644 --- a/md/UBERON/84/UBERON_0005884.md +++ b/md/UBERON/84/UBERON_0005884.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005884 * *Label* = hyoid arch skeleton - * *Definition* = A subdivision of skeleton that subdivision_of a pharyngeal arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of skeleton that subdivision_of a pharyngeal arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: it's not clear where AAO:'hyobranchial skeleton' belongs ## Synonyms - * hyal@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001276] - * hyocde@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001276] - * hyoid arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001276] - * pharyngeal arch 2 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001276] - * hyoid bars [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001276] - * hyoid arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001276[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * visceral arch 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001276[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * hyal@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001276 ] + * hyocde@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001276 ] + * hyoid arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001276 ] + * pharyngeal arch 2 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001276 ] + * hyoid bars [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001276 ] + * hyoid arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001276, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * visceral arch 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001276, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0005984.md b/md/UBERON/84/UBERON_0005984.md index b39349f022..5e54ae7f5a 100644 --- a/md/UBERON/84/UBERON_0005984.md +++ b/md/UBERON/84/UBERON_0005984.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005984 * *Label* = subendocardium layer - * *Definition* = the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010546] + * *Definition* = the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010546 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0006284.md b/md/UBERON/84/UBERON_0006284.md index 7720332893..66680f735c 100644 --- a/md/UBERON/84/UBERON_0006284.md +++ b/md/UBERON/84/UBERON_0006284.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006284 * *Label* = early prosencephalic vesicle - * *Definition* = future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = future brain vesicle that gives rise to telencephalic ventricle/lateral ventricles and 3rd ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * prosencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001571] + * prosencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001571 ] * preevaginated forebrain vesicle - * forebrain ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000644] - * forebrain vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000644] - * prosencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000644] + * forebrain ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000644 ] + * forebrain vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000644 ] + * prosencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000644 ] ## Cross-references @@ -41,8 +41,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0006484.md b/md/UBERON/84/UBERON_0006484.md index 3a03227cec..580fd8f89e 100644 --- a/md/UBERON/84/UBERON_0006484.md +++ b/md/UBERON/84/UBERON_0006484.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006484 * *Label* = Brodmann (1909) area 47 - * *Definition* = Brodmann area 47, or BA47, is part of the frontal cortex in the human brain. Curving from the lateral surface of the frontal lobe into the ventral (orbital) frontal cortex. It is below areas BA10 and BA45, and beside BA11. This area is also known as orbital area 47. In the human, on the orbital surface it surrounds the caudal portion of the orbital sulcus (H) from which it extends laterally into the orbital part of inferior frontal gyrus (H). Cytoarchitectonically it is bounded caudally by the triangular area 45, medially by the prefrontal area 11 of Brodmann-1909, and rostrally by the frontopolar area 10 (Brodmann-1909). It incorporates the region that Brodmann identified as 'Area 12' in the monkey, and therefore, following the suggestion of Michael Petrides, some contemporary neuroscientists refer to the region as 'BA47/12. ' BA47 has been implicated in the processing of syntax in spoken and signed languages, and more recently in musical syntax. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_47] + * *Definition* = Brodmann area 47, or BA47, is part of the frontal cortex in the human brain. Curving from the lateral surface of the frontal lobe into the ventral (orbital) frontal cortex. It is below areas BA10 and BA45, and beside BA11. This area is also known as orbital area 47. In the human, on the orbital surface it surrounds the caudal portion of the orbital sulcus (H) from which it extends laterally into the orbital part of inferior frontal gyrus (H). Cytoarchitectonically it is bounded caudally by the triangular area 45, medially by the prefrontal area 11 of Brodmann-1909, and rostrally by the frontopolar area 10 (Brodmann-1909). It incorporates the region that Brodmann identified as 'Area 12' in the monkey, and therefore, following the suggestion of Michael Petrides, some contemporary neuroscientists refer to the region as 'BA47/12. ' BA47 has been implicated in the processing of syntax in spoken and signed languages, and more recently in musical syntax. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_47 ] ## Synonyms - * B09-47 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1779] - * BA47 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 47 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1779] - * Brodmann area 47 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68644] - * Brodmann area 47, orbital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1779] - * area 47 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68644] - * area 47 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1779] - * area orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1779] - * area orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_47[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * orbital area 47 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68644] - * B09-47 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1779[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-47 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1779 ] + * BA47 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 47 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1779 ] + * Brodmann area 47 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68644 ] + * Brodmann area 47, orbital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1779 ] + * area 47 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68644 ] + * area 47 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1779 ] + * area orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1779 ] + * area orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_47, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * orbital area 47 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68644 ] + * B09-47 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1779, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -25,7 +25,7 @@ * NIF_GrossAnatomy:birnlex_1779 * NeuroNames:2404 * SCTID:384807009 - * UMLS:C1272513 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1779] + * UMLS:C1272513 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1779 ] * Wikipedia:Brodmann_area_47 ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0006684.md b/md/UBERON/84/UBERON_0006684.md index 47a9c1dc77..db2fabb6ca 100644 --- a/md/UBERON/84/UBERON_0006684.md +++ b/md/UBERON/84/UBERON_0006684.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006684 * *Label* = sphenoidal fontanelle - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterion] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterion ] * *Comment* = See also FMA:264720 ## Synonyms - * sphenoidal fontanelle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterion] + * sphenoidal fontanelle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterion ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0006984.md b/md/UBERON/84/UBERON_0006984.md index ade1041898..e8c9818e0e 100644 --- a/md/UBERON/84/UBERON_0006984.md +++ b/md/UBERON/84/UBERON_0006984.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006984 * *Label* = anatomical surface - * *Definition* = Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -16,7 +16,7 @@ * EHDAA2:0003192 * FMA:24137 * ID:0000000 - * UMLS:C1515977 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anatomic_Surface] + * UMLS:C1515977 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anatomic_Surface ] * ZFA:0005594 * ncithesaurus:Anatomic_Surface @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0007284.md b/md/UBERON/84/UBERON_0007284.md index c55b6c8a11..a1e96fb92d 100644 --- a/md/UBERON/84/UBERON_0007284.md +++ b/md/UBERON/84/UBERON_0007284.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007284 * *Label* = presumptive neural plate - * *Definition* = A presumptive structure that has_potential_to_develop_into a neural plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a neural plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [neural plate](../../UBERON/75/UBERON_0003075.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the gastrula which gives rise to the neural plate.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0007384.md b/md/UBERON/84/UBERON_0007384.md index ef3d4c40a1..ae67e8e5f2 100644 --- a/md/UBERON/84/UBERON_0007384.md +++ b/md/UBERON/84/UBERON_0007384.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007384 * *Label* = appendage lymph vessel - * *Definition* = A lymphatic vessel that is part of a limb/fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel that is part of a limb/fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired limb/fin](../../UBERON/08/UBERON_0004708.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0007684.md b/md/UBERON/84/UBERON_0007684.md index 66c6eaef4a..12f9c98bc2 100644 --- a/md/UBERON/84/UBERON_0007684.md +++ b/md/UBERON/84/UBERON_0007684.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007684 * *Label* = uriniferous tubule - * *Definition* = functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0008284.md b/md/UBERON/84/UBERON_0008284.md index 081abe87ef..cd14b2e047 100644 --- a/md/UBERON/84/UBERON_0008284.md +++ b/md/UBERON/84/UBERON_0008284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008284 * *Label* = columnella muscle - * *Definition* = The muscle of the central column or axis of a spiral univalve shell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000277[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Columella_(gastropod)#Columellar_muscles] + * *Definition* = The muscle of the central column or axis of a spiral univalve shell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000277, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Columella_(gastropod)#Columellar_muscles ] ## Synonyms - * columella muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000277] + * columella muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000277 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0008584.md b/md/UBERON/84/UBERON_0008584.md index e28bb1fcc7..e4e7f6d386 100644 --- a/md/UBERON/84/UBERON_0008584.md +++ b/md/UBERON/84/UBERON_0008584.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008584 * *Label* = vertical muscle of tongue - * *Definition* = A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] + * *Definition* = A muscle of the tongue that is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] ## Synonyms - * intrinsic tongue muscle vertical component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002329] - * vertical lingual muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46696] - * musculus verticalis linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vertical muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] - * verticalis linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] - * verticalis linguae muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] - * verticalis lingu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] - * verticalis lingu muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] - * verticalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertical_muscle_of_tongue] + * intrinsic tongue muscle vertical component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002329 ] + * vertical lingual muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46696 ] + * musculus verticalis linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vertical muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] + * verticalis linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] + * verticalis linguae muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] + * verticalis lingu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] + * verticalis lingu muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] + * verticalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertical_muscle_of_tongue ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:46696 * MA:0002329 * SCTID:244793008 - * UMLS:C1708562 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component] + * UMLS:C1708562 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component ] * Wikipedia:Vertical_muscle_of_tongue * http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png * ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0008784.md b/md/UBERON/84/UBERON_0008784.md index dc3404d397..496eb610ca 100644 --- a/md/UBERON/84/UBERON_0008784.md +++ b/md/UBERON/84/UBERON_0008784.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008784 * *Label* = lower limb segment - * *Definition* = A limb segment that is part of a hindlimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb segment that is part of a hindlimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * free lower limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24877] - * free lower limb subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24877] - * segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24877] - * subdivision of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24877] + * free lower limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24877 ] + * free lower limb subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24877 ] + * segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24877 ] + * subdivision of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24877 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limb segment](../../UBERON/29/UBERON_0002529.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008784 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0008884.md b/md/UBERON/84/UBERON_0008884.md index 0abfdc08b2..15e67def0d 100644 --- a/md/UBERON/84/UBERON_0008884.md +++ b/md/UBERON/84/UBERON_0008884.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008884 * *Label* = left putamen - * *Definition* = A putamen that is part of a left cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A putamen that is part of a left cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left cerebral hemisphere](../../UBERON/12/UBERON_0002812.md) and [putamen](../../UBERON/74/UBERON_0001874.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0009484.md b/md/UBERON/84/UBERON_0009484.md index aeca26875d..96cac06db6 100644 --- a/md/UBERON/84/UBERON_0009484.md +++ b/md/UBERON/84/UBERON_0009484.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0009584.md b/md/UBERON/84/UBERON_0009584.md index facd70faf4..a7028e08f7 100644 --- a/md/UBERON/84/UBERON_0009584.md +++ b/md/UBERON/84/UBERON_0009584.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009584 * *Label* = 1st arch mandibular mesenchyme - * *Definition* = Mesenchyme that is part of a 1st arch mandibular component. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a 1st arch mandibular component. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesenchymal region of mandibular component of first pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * mesenchyme of mandibular component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16385] + * mesenchymal region of mandibular component of first pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * mesenchyme of mandibular component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16385 ] * mandibular component mesenchyme * mandibular mesenchyme @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [1st arch mandibular component](../../UBERON/37/UBERON_0007237.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010043 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0009984.md b/md/UBERON/84/UBERON_0009984.md index a3db33dce4..64778121e6 100644 --- a/md/UBERON/84/UBERON_0009984.md +++ b/md/UBERON/84/UBERON_0009984.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009984 * *Label* = medial condyle of femur - * *Definition* = The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_femur] + * *Definition* = The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the 'medial epicondyle' and can be palpated by running fingers medially from the patella with the knee in flexion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_femur ] ## Synonyms - * c. medialis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * c. medialis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_femur] - * medial condyle of the femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_femur] + * c. medialis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_femur ] + * c. medialis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial condyle of the femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_femur ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010084.md b/md/UBERON/84/UBERON_0010084.md index f1521a572d..9a1459dd4e 100644 --- a/md/UBERON/84/UBERON_0010084.md +++ b/md/UBERON/84/UBERON_0010084.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010284.md b/md/UBERON/84/UBERON_0010284.md index f6e004f119..a041236472 100644 --- a/md/UBERON/84/UBERON_0010284.md +++ b/md/UBERON/84/UBERON_0010284.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010284 * *Label* = lacrimal punctum - * *Definition* = A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_punctum] + * *Definition* = A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_punctum ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010384.md b/md/UBERON/84/UBERON_0010384.md index 5e479372b6..560c760bdb 100644 --- a/md/UBERON/84/UBERON_0010384.md +++ b/md/UBERON/84/UBERON_0010384.md @@ -6,7 +6,7 @@ ## Synonyms - * laryngopharynx lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55096] + * laryngopharynx lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55096 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [hypopharynx](../../UBERON/51/UBERON_0001051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010584.md b/md/UBERON/84/UBERON_0010584.md index 9c0e9ebdcd..f216ee81f9 100644 --- a/md/UBERON/84/UBERON_0010584.md +++ b/md/UBERON/84/UBERON_0010584.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010584 * *Label* = pedal digit 5 phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 5 phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 5 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 5 phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5 mesenchyme](../../UBERON/99/UBERON_0005699.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010684.md b/md/UBERON/84/UBERON_0010684.md index 062ae04574..1a20e3b6b8 100644 --- a/md/UBERON/84/UBERON_0010684.md +++ b/md/UBERON/84/UBERON_0010684.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010684 * *Label* = pedal digit 5 phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit 5 mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit 5 mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 5 phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 5 phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 5 phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5 mesenchyme](../../UBERON/99/UBERON_0005699.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010884.md b/md/UBERON/84/UBERON_0010884.md index 1e22b81682..eba26a7e20 100644 --- a/md/UBERON/84/UBERON_0010884.md +++ b/md/UBERON/84/UBERON_0010884.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010884 * *Label* = forelimb bone pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a forelimb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a forelimb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * wing bone pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * wing bone pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0010984.md b/md/UBERON/84/UBERON_0010984.md index 250eee947a..9b31cd5637 100644 --- a/md/UBERON/84/UBERON_0010984.md +++ b/md/UBERON/84/UBERON_0010984.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011184.md b/md/UBERON/84/UBERON_0011184.md index 26e3dbeb9b..df68f3aefb 100644 --- a/md/UBERON/84/UBERON_0011184.md +++ b/md/UBERON/84/UBERON_0011184.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011184 * *Label* = epithelium of crypt of lieberkuhn - * *Definition* = An epithelium that is part of a crypt of Lieberkuhn. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a crypt of Lieberkuhn. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Note that FMA has classes for subdivisions of this epithelium ## Synonyms @@ -13,7 +13,7 @@ ## Cross-references - * UMLS:C2826787 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Crypt_Epithelium] + * UMLS:C2826787 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Crypt_Epithelium ] * ncithesaurus:Crypt_Epithelium ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011184 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011384.md b/md/UBERON/84/UBERON_0011384.md index 4f63ec22d4..44ab2cd520 100644 --- a/md/UBERON/84/UBERON_0011384.md +++ b/md/UBERON/84/UBERON_0011384.md @@ -6,7 +6,7 @@ ## Synonyms - * superior pancreatico-duodenal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002192] + * superior pancreatico-duodenal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002192 ] * vena pancreaticoduodenalis superior ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011384 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011584.md b/md/UBERON/84/UBERON_0011584.md index 63750c7a1a..13abeae6f7 100644 --- a/md/UBERON/84/UBERON_0011584.md +++ b/md/UBERON/84/UBERON_0011584.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011584 * *Label* = zeugopodial skeleton - * *Definition* = Section of the forelimb skeleton located between the stylopodium and the autopodium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005010] + * *Definition* = Section of the forelimb skeleton located between the stylopodium and the autopodium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005010 ] ## Synonyms - * skeleton of zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * zeugopod skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * epipodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005010] - * zygopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005010] + * skeleton of zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * zeugopod skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * epipodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005010 ] + * zygopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005010 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) and [subdivision of](../../core#subdivision/of/core#subdivision_of.md) some [zeugopod](../../UBERON/71/UBERON_0002471.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = zeugopodial * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = zygopodial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011684.md b/md/UBERON/84/UBERON_0011684.md index dfd83a5731..77a9e7a4ae 100644 --- a/md/UBERON/84/UBERON_0011684.md +++ b/md/UBERON/84/UBERON_0011684.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011684 * *Label* = levator palatoquadrati - * *Definition* = A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A muscle derivative of the mandibular levator that runs from the chondrocranium to the palatoquadrate cartilage. Found in sharks [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In some fishes such as the chimera and in tetrapods the palatoquadrate becomes fused to the braincase and this muscle is absent. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011784.md b/md/UBERON/84/UBERON_0011784.md index f385f4dca9..615f4966f6 100644 --- a/md/UBERON/84/UBERON_0011784.md +++ b/md/UBERON/84/UBERON_0011784.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011784 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0011984.md b/md/UBERON/84/UBERON_0011984.md index f56f5db7cc..bf7e0d10ca 100644 --- a/md/UBERON/84/UBERON_0011984.md +++ b/md/UBERON/84/UBERON_0011984.md @@ -6,14 +6,14 @@ ## Synonyms - * digitus sextus pedis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * digitus sextus pedis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hind digit 6 * hind digit VI - * hind limb digit 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * pes digit VI * sixth toe * toe 6 - * foot digit 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[ray number](../../UBPROP/04/UBPROP_0000104.md)* = 6 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011984 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0012084.md b/md/UBERON/84/UBERON_0012084.md index 27717c6f58..097c305b2e 100644 --- a/md/UBERON/84/UBERON_0012084.md +++ b/md/UBERON/84/UBERON_0012084.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012084 * *Label* = lumen of secondary bronchus - * *Definition* = An anatomical cavity that is part of a lobar bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a lobar bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lobar bronchial lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62520] - * lumen of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62520] + * lobar bronchial lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62520 ] + * lumen of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62520 ] * secondary bronchial lumen ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0012184.md b/md/UBERON/84/UBERON_0012184.md index fab95cd2c4..586c62e687 100644 --- a/md/UBERON/84/UBERON_0012184.md +++ b/md/UBERON/84/UBERON_0012184.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012184 * *Label* = obsolete tunica vasculosa plexus - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376 ] * *Comment* = obsolete term deriving from MA to NCITA mappings. ## Synonyms @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = MA:0001284 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Tunica_Vasculosa - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012184 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_0012284.md b/md/UBERON/84/UBERON_0012284.md index 03a2af44b5..49c31f1824 100644 --- a/md/UBERON/84/UBERON_0012284.md +++ b/md/UBERON/84/UBERON_0012284.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0013584.md b/md/UBERON/84/UBERON_0013584.md index 701149fd0d..f613d55490 100644 --- a/md/UBERON/84/UBERON_0013584.md +++ b/md/UBERON/84/UBERON_0013584.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013584 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0013684.md b/md/UBERON/84/UBERON_0013684.md index bcc81d1af5..625ced3999 100644 --- a/md/UBERON/84/UBERON_0013684.md +++ b/md/UBERON/84/UBERON_0013684.md @@ -6,7 +6,7 @@ ## Synonyms - * right thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:258714] + * right thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:258714 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal thalamus](../../UBERON/03/UBERON_0004703.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0014284.md b/md/UBERON/84/UBERON_0014284.md index db400b4f63..295c07ff6c 100644 --- a/md/UBERON/84/UBERON_0014284.md +++ b/md/UBERON/84/UBERON_0014284.md @@ -4,22 +4,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014284 * *Label* = endopiriform nucleus * *Definition* = An elongated nucleus consisting largely of multipolar spiny cells lying deep to the piriform cortex. -According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] +According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, (Ed.), Academic Press, San Diego), it is part of the claustrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] ## Synonyms - * Layer 4 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] - * endopiriform nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] - * layer IV of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] - * Layer 4 of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] - * layer IV of piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_091033] + * Layer 4 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] + * endopiriform nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] + * layer IV of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] + * Layer 4 of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] + * layer IV of piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_091033 ] ## Cross-references * BAMS:EP * NIF_GrossAnatomy:nlx_anat_091033 * NeuroNames:2276 - * OldNeuroNames:2276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:nlx_anat_091033] + * OldNeuroNames:2276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:nlx_anat_091033 ] ## Subsets @@ -38,8 +38,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( ## Other Annotations * *[contributor](../../or/contributor.md)* = Maryann Martone - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014284 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0014484.md b/md/UBERON/84/UBERON_0014484.md index 140c26bb84..24ac7d46ef 100644 --- a/md/UBERON/84/UBERON_0014484.md +++ b/md/UBERON/84/UBERON_0014484.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014484 * *Label* = distal phalanx of digit 2 - * *Definition* = A distal phalanx that is part of a digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal phalanx that is part of a digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014484 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0014684.md b/md/UBERON/84/UBERON_0014684.md index 09a232b563..517e78b320 100644 --- a/md/UBERON/84/UBERON_0014684.md +++ b/md/UBERON/84/UBERON_0014684.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014684 * *Label* = Helicoprion tooth whorl - * *Definition* = A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Helicoprion#Nature_of_the_tooth_whorl] + * *Definition* = A tooth whorl found in extinct holocephalids, in which the teeth in the center of the spiral are smallest and oldest, probably occupying the entire mandibular arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Helicoprion#Nature_of_the_tooth_whorl ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7863 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014684 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0014784.md b/md/UBERON/84/UBERON_0014784.md index d468bd07c2..2eab84142c 100644 --- a/md/UBERON/84/UBERON_0014784.md +++ b/md/UBERON/84/UBERON_0014784.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014784 * *Label* = transverse cloacal muscle - * *Definition* = a very prominent superficial muscle and with its almost transverse course it forms the boundary between the abdomen and the tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] + * *Definition* = a very prominent superficial muscle and with its almost transverse course it forms the boundary between the abdomen and the tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] ## Synonyms - * m. transversus cloacae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] - * musculus transversus cloacae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] + * m. transversus cloacae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] + * musculus transversus cloacae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014784 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0014884.md b/md/UBERON/84/UBERON_0014884.md index d7b3155fc8..aa56d82b85 100644 --- a/md/UBERON/84/UBERON_0014884.md +++ b/md/UBERON/84/UBERON_0014884.md @@ -6,12 +6,12 @@ ## Synonyms - * distal end of distal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] - * distal end of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] - * distal epiphysis of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] - * head of distal phalanx of fourth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] - * head of distal phalanx of fourth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] - * head of distal phalanx of ring finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37645] + * distal end of distal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] + * distal end of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] + * distal epiphysis of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] + * head of distal phalanx of fourth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] + * head of distal phalanx of fourth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] + * head of distal phalanx of ring finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37645 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 4](../../UBERON/13/UBERON_0004313.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014884 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_0015084.md b/md/UBERON/84/UBERON_0015084.md index f72a448902..99194a3d5a 100644 --- a/md/UBERON/84/UBERON_0015084.md +++ b/md/UBERON/84/UBERON_0015084.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015084 + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2000084.md b/md/UBERON/84/UBERON_2000084.md index a07e68b0f4..cc929eef83 100644 --- a/md/UBERON/84/UBERON_2000084.md +++ b/md/UBERON/84/UBERON_2000084.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000084 * *Label* = yolk - * *Definition* = Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2000284.md b/md/UBERON/84/UBERON_2000284.md index 21fc0c9805..306cc02efc 100644 --- a/md/UBERON/84/UBERON_2000284.md +++ b/md/UBERON/84/UBERON_2000284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000284 * *Label* = subopercle - * *Definition* = Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * subopercles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000284[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * subopercles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000284, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2000384.md b/md/UBERON/84/UBERON_2000384.md index d83cb8bdc4..319a121edd 100644 --- a/md/UBERON/84/UBERON_2000384.md +++ b/md/UBERON/84/UBERON_2000384.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000384 * *Label* = levator arcus palatini - * *Definition* = Jaw muscle that connects the sphenotic to the metapterygoid and hyomandibula and promotes the elevation/abduction of the suspensorium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18307809] + * *Definition* = Jaw muscle that connects the sphenotic to the metapterygoid and hyomandibula and promotes the elevation/abduction of the suspensorium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18307809 ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2000484.md b/md/UBERON/84/UBERON_2000484.md index d04e4d9d5a..6a7fde80ec 100644 --- a/md/UBERON/84/UBERON_2000484.md +++ b/md/UBERON/84/UBERON_2000484.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2000784.md b/md/UBERON/84/UBERON_2000784.md index 133af00602..364118bbb8 100644 --- a/md/UBERON/84/UBERON_2000784.md +++ b/md/UBERON/84/UBERON_2000784.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 15 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000784[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 15 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000784, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_2000884.md b/md/UBERON/84/UBERON_2000884.md index 2586014cf9..dbf0b434d5 100644 --- a/md/UBERON/84/UBERON_2000884.md +++ b/md/UBERON/84/UBERON_2000884.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000884[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000884, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_2000984.md b/md/UBERON/84/UBERON_2000984.md index e305c84f1b..365edb80d7 100644 --- a/md/UBERON/84/UBERON_2000984.md +++ b/md/UBERON/84/UBERON_2000984.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2001484.md b/md/UBERON/84/UBERON_2001484.md index 44097a5e1f..da2e933e09 100644 --- a/md/UBERON/84/UBERON_2001484.md +++ b/md/UBERON/84/UBERON_2001484.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001484 * *Label* = obsolete superficial blastomere - * *Definition* = Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = ZFA:0001484 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_2001584.md b/md/UBERON/84/UBERON_2001584.md index 5917d9f322..6562a32cf5 100644 --- a/md/UBERON/84/UBERON_2001584.md +++ b/md/UBERON/84/UBERON_2001584.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001584 * *Label* = caudal procurrent ray - * *Definition* = Caudal fin lepidotrichium that form part of the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or an epural or an uroneural (dorsal series) and with a haemal spine of a preural vertebra (ventral series). Caudal procurrent rays are shorter than the caudal principal rays. A caudal procurrent ray is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:Arratia_2008[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Caudal fin lepidotrichium that form part of the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or an epural or an uroneural (dorsal series) and with a haemal spine of a preural vertebra (ventral series). Caudal procurrent rays are shorter than the caudal principal rays. A caudal procurrent ray is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:Arratia_2008, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms - * caudal precurrent ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001584] - * caudal procurrent lepidotrichium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001584] - * caudal spiny ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001584] - * rudimentary ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001584] + * caudal precurrent ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001584 ] + * caudal procurrent lepidotrichium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001584 ] + * caudal spiny ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001584 ] + * rudimentary ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001584 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2001684.md b/md/UBERON/84/UBERON_2001684.md index a4894a2e00..74b07dba52 100644 --- a/md/UBERON/84/UBERON_2001684.md +++ b/md/UBERON/84/UBERON_2001684.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001684 * *Label* = ossified transcapular ligament - * *Definition* = Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:pem] + * *Definition* = Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:pem ] ## Synonyms - * ossified Baudelot's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001684] - * ossified transscapular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001684] + * ossified Baudelot's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001684 ] + * ossified transscapular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001684 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2001784.md b/md/UBERON/84/UBERON_2001784.md index 7ec7111498..53d1d76878 100644 --- a/md/UBERON/84/UBERON_2001784.md +++ b/md/UBERON/84/UBERON_2001784.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001784 * *Label* = autopalatine-vomer joint - * *Definition* = Joint that articulates autopalatine and vomer bones. Autopalatine-vomer joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates autopalatine and vomer bones. Autopalatine-vomer joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [autopalatine](../../UBERON/20/UBERON_2000620.md) and [core#connects](../../ts/core#connects.md) some [vomer](../../UBERON/96/UBERON_0002396.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2001884.md b/md/UBERON/84/UBERON_2001884.md index f52144d4e1..5f82adf857 100644 --- a/md/UBERON/84/UBERON_2001884.md +++ b/md/UBERON/84/UBERON_2001884.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001884 * *Label* = accessory neural arch - * *Definition* = Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition from de Pinna and Grande (2003). ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2001984.md b/md/UBERON/84/UBERON_2001984.md index 91ddc46f9a..3adbf1238c 100644 --- a/md/UBERON/84/UBERON_2001984.md +++ b/md/UBERON/84/UBERON_2001984.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001984 * *Label* = centrum 2 - * *Definition* = Centrum that is part of vertebra 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2002084.md b/md/UBERON/84/UBERON_2002084.md index bc5222235a..492093143d 100644 --- a/md/UBERON/84/UBERON_2002084.md +++ b/md/UBERON/84/UBERON_2002084.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002084 * *Label* = pleurostyle - * *Definition* = Postero-dorsal process of preural vertebra 1 or postero-dorsal process of the compound terminal centrum. The pleurostyle is a paired membrane bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Postero-dorsal process of preural vertebra 1 or postero-dorsal process of the compound terminal centrum. The pleurostyle is a paired membrane bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The pleurostyle is currently interpreted as a modified pair of uroneurals that fuse to preural vertebra 1 or compound centrum early in ontogeny. However, it is unclear which pair of the series of uroneurals forms the pleurostyle in different teleost subgroups. ## Synonyms - * uroneural 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002084] - * uroneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002084] + * uroneural 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002084 ] + * uroneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002084 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2002284.md b/md/UBERON/84/UBERON_2002284.md index 249fea37df..78be7c0148 100644 --- a/md/UBERON/84/UBERON_2002284.md +++ b/md/UBERON/84/UBERON_2002284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002284 * *Label* = body marking - * *Definition* = Surface structure that is a visible mark on the body resulting from pigmentation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a visible mark on the body resulting from pigmentation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * markings [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002284[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * markings [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002284, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2005084.md b/md/UBERON/84/UBERON_2005084.md index ab189ebcfb..409d0a5e3e 100644 --- a/md/UBERON/84/UBERON_2005084.md +++ b/md/UBERON/84/UBERON_2005084.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005084 * *Label* = metencephalic artery - * *Definition* = These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2005184.md b/md/UBERON/84/UBERON_2005184.md index f2cb4211b1..cfad5e958d 100644 --- a/md/UBERON/84/UBERON_2005184.md +++ b/md/UBERON/84/UBERON_2005184.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 2 contralateral llf interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005184] + * middle dorsal 2 contralateral llf interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005184 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_2005384.md b/md/UBERON/84/UBERON_2005384.md index 1e74be8965..1a9117d3d7 100644 --- a/md/UBERON/84/UBERON_2005384.md +++ b/md/UBERON/84/UBERON_2005384.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005384 * *Label* = dorsal fin proximal radial bone 7 - * *Definition* = dorsal fin proximal radial 7 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 7 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 7](../../UBERON/84/UBERON_2105384.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2105384.md b/md/UBERON/84/UBERON_2105384.md index 5012b4c526..5cdc6ddc1c 100644 --- a/md/UBERON/84/UBERON_2105384.md +++ b/md/UBERON/84/UBERON_2105384.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 7](../../UBERON/70/UBERON_2005370.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_2205384.md b/md/UBERON/84/UBERON_2205384.md index 7225db4256..98632c99a2 100644 --- a/md/UBERON/84/UBERON_2205384.md +++ b/md/UBERON/84/UBERON_2205384.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205384 * *Label* = dorsal fin proximal radial cartilage 7 - * *Definition* = dorsal fin proximal radial 7 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 7 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 7](../../UBERON/84/UBERON_2105384.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3000284.md b/md/UBERON/84/UBERON_3000284.md index 8f7e6ed747..b25949fe23 100644 --- a/md/UBERON/84/UBERON_3000284.md +++ b/md/UBERON/84/UBERON_3000284.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000284 * *Label* = margo tympanicus of pterygoid - * *Definition* = Margin that connects the posterior and medial rami of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Margin that connects the posterior and medial rami of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3000384.md b/md/UBERON/84/UBERON_3000384.md index a035cdae29..1dbb911e18 100644 --- a/md/UBERON/84/UBERON_3000384.md +++ b/md/UBERON/84/UBERON_3000384.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3000784.md b/md/UBERON/84/UBERON_3000784.md index 621649623d..ecd91814d6 100644 --- a/md/UBERON/84/UBERON_3000784.md +++ b/md/UBERON/84/UBERON_3000784.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000784 * *Label* = ulnar condyle - * *Definition* = Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * medial condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000784] + * medial condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000784 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3000884.md b/md/UBERON/84/UBERON_3000884.md index 9c2b19ff7b..cf524cf181 100644 --- a/md/UBERON/84/UBERON_3000884.md +++ b/md/UBERON/84/UBERON_3000884.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000884 * *Label* = epipubis - * *Definition* = Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3010084.md b/md/UBERON/84/UBERON_3010084.md index de6acce7fc..2a90647482 100644 --- a/md/UBERON/84/UBERON_3010084.md +++ b/md/UBERON/84/UBERON_3010084.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010084 * *Label* = M. tibialis posticus - * *Definition* = Originates on the entire medial surface of the shaft of the tibiofibula. Inserts on the tibiale by a long tendon proximo-lateral to the insertion of the medial belly of M. tibialis anticus longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the entire medial surface of the shaft of the tibiofibula. Inserts on the tibiale by a long tendon proximo-lateral to the insertion of the medial belly of M. tibialis anticus longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3010184.md b/md/UBERON/84/UBERON_3010184.md index bb83194033..42a276713d 100644 --- a/md/UBERON/84/UBERON_3010184.md +++ b/md/UBERON/84/UBERON_3010184.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3010284.md b/md/UBERON/84/UBERON_3010284.md index 4c7197cb59..91308793e5 100644 --- a/md/UBERON/84/UBERON_3010284.md +++ b/md/UBERON/84/UBERON_3010284.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010284 * *Label* = obsolete vegetal blastomere - * *Definition* = Unpigmented, larger blastomere of the vegetal (lower) hemisphere of the cleaving embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Unpigmented, larger blastomere of the vegetal (lower) hemisphere of the cleaving embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms - * macromere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010284] + * macromere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010284 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/84/UBERON_3010584.md b/md/UBERON/84/UBERON_3010584.md index 204facf42e..2e84aa57e5 100644 --- a/md/UBERON/84/UBERON_3010584.md +++ b/md/UBERON/84/UBERON_3010584.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010584 * *Label* = mandibular arch neural crest - * *Definition* = Anterior most migratory stream of cranial neural crest. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Anterior most migratory stream of cranial neural crest. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3010684.md b/md/UBERON/84/UBERON_3010684.md index f6b197e0bd..9c87e50ea6 100644 --- a/md/UBERON/84/UBERON_3010684.md +++ b/md/UBERON/84/UBERON_3010684.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_3010784.md b/md/UBERON/84/UBERON_3010784.md index 70e6e805c5..9da50419b9 100644 --- a/md/UBERON/84/UBERON_3010784.md +++ b/md/UBERON/84/UBERON_3010784.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010784 * *Label* = m. oblique internus - * *Definition* = A muscular sheet in which the fibers run in right angles to those of the m. oblique externus, slanting downward anteriorly. This is one of three sheets composing the flank musculature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A muscular sheet in which the fibers run in right angles to those of the m. oblique externus, slanting downward anteriorly. This is one of three sheets composing the flank musculature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_4200084.md b/md/UBERON/84/UBERON_4200084.md index e577511247..eccaaa4ead 100644 --- a/md/UBERON/84/UBERON_4200084.md +++ b/md/UBERON/84/UBERON_4200084.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/84/UBERON_4200184.md b/md/UBERON/84/UBERON_4200184.md index c3d7675b40..d55e4141d1 100644 --- a/md/UBERON/84/UBERON_4200184.md +++ b/md/UBERON/84/UBERON_4200184.md @@ -29,7 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0000085.md b/md/UBERON/85/UBERON_0000085.md index d9ea3f0462..08040ac273 100644 --- a/md/UBERON/85/UBERON_0000085.md +++ b/md/UBERON/85/UBERON_0000085.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000085 * *Label* = morula - * *Definition* = A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0012130] + * *Definition* = A spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0012130 ] * *Comment* = EHDAA2 has embryo starting later ## Synonyms - * morula (2-16 cells) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000005] + * morula (2-16 cells) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000005 ] ## Cross-references @@ -17,7 +17,7 @@ * GAID:1295 * MESH:A16.254.270.550 * SCTID:361474003 - * UMLS:C0026573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Morula] + * UMLS:C0026573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Morula ] * Wikipedia:Morula * http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0000385.md b/md/UBERON/85/UBERON_0000385.md index d981758c7f..6334daa039 100644 --- a/md/UBERON/85/UBERON_0000385.md +++ b/md/UBERON/85/UBERON_0000385.md @@ -7,9 +7,9 @@ ## Synonyms - * Labial glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71613] - * Labial glands set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71613] - * glandulae labiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71613[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Labial glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71613 ] + * Labial glands set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71613 ] + * glandulae labiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71613, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,9 +31,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FMA:71613 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000449 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000385 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_0000485.md b/md/UBERON/85/UBERON_0000485.md index 991b2b854d..4c8e3880ca 100644 --- a/md/UBERON/85/UBERON_0000485.md +++ b/md/UBERON/85/UBERON_0000485.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000485 * *Label* = simple columnar epithelium - * *Definition* = Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Simple_columnar_epithelium] + * *Definition* = Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Simple_columnar_epithelium ] ## Synonyms * epithelium simplex columnare * simple columnar epithelium - * columnar epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003068] - * columnar epithlium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000068] + * columnar epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003068 ] + * columnar epithlium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000068 ] ## Cross-references @@ -24,7 +24,7 @@ * HAO:0000068 * SCTID:32210007 * TAO:0001496 - * UMLS:C0836135 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Simple_Columnar_Epithelium] + * UMLS:C0836135 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Simple_Columnar_Epithelium ] * Wikipedia:Simple_columnar_epithelium * XAO:0004008 * ZFA:0001496 @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of columnar cells.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of columnar cells.[CARO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of columnar cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0000985.md b/md/UBERON/85/UBERON_0000985.md index 812ac1f19b..fb0856c06a 100644 --- a/md/UBERON/85/UBERON_0000985.md +++ b/md/UBERON/85/UBERON_0000985.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000985 * *Label* = axillary vein - * *Definition* = In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_vein] + * *Definition* = In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * subcostal vein - * vena axillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena axillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A07.231.908.077 * OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA * SCTID:181389002 - * UMLS:C0004456 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axillary_Vein] + * UMLS:C0004456 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axillary_Vein ] * Wikipedia:Axillary_vein * galen:AxillaryVein * http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001085.md b/md/UBERON/85/UBERON_0001085.md index 505e1e319f..aedb7aee1d 100644 --- a/md/UBERON/85/UBERON_0001085.md +++ b/md/UBERON/85/UBERON_0001085.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001085 * *Label* = skin of trunk - * *Definition* = A zone of skin that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - distinguish between entire skin of region and arbitrary zone of skin on region ## Synonyms - * torso zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * torso zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * trunk skin - * trunk zone of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * zone of skin of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * trunk zone of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * zone of skin of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:23093 * MA:0000517 * SCTID:181489001 - * UMLS:C0205031 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin_of_the_Trunk] + * UMLS:C0205031 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin_of_the_Trunk ] * ncithesaurus:Skin_of_the_Trunk ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001185.md b/md/UBERON/85/UBERON_0001185.md index 3840d0655f..50e174d576 100644 --- a/md/UBERON/85/UBERON_0001185.md +++ b/md/UBERON/85/UBERON_0001185.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001185 * *Label* = right renal artery - * *Definition* = Renal artery that supplies the right kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Renal artery that supplies the right kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP] ## Synonyms @@ -17,7 +17,7 @@ * OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA * SCTID:36800007 - * UMLS:C0226332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Renal_Artery] + * UMLS:C0226332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Renal_Artery ] * http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png * ncithesaurus:Right_Renal_Artery @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [renal artery](../../UBERON/84/UBERON_0001184.md) and [supplies](../../FMA/03/FMA_86003.md) some [right kidney](../../UBERON/39/UBERON_0004539.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001285.md b/md/UBERON/85/UBERON_0001285.md index 3be831cde0..14f2962720 100644 --- a/md/UBERON/85/UBERON_0001285.md +++ b/md/UBERON/85/UBERON_0001285.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001285 * *Label* = nephron - * *Definition* = The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9268568[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephron] + * *Definition* = The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9268568, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephron ] * *Comment* = Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney] ## Synonyms - * mature nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28491] - * nephroneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephron[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tubulus renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nephron[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mature nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28491 ] + * nephroneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephron, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tubulus renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nephron, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A05.810.453.736 * SCTID:361337001 * TAO:0002153 - * UMLS:C0027713 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nephron] + * UMLS:C0027713 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nephron ] * Wikipedia:Nephron * ZFA:0005282 * http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Functional unit of the kidney that filters waste.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001385.md b/md/UBERON/85/UBERON_0001385.md index e1b00b1306..c572b49fbb 100644 --- a/md/UBERON/85/UBERON_0001385.md +++ b/md/UBERON/85/UBERON_0001385.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001385 * *Label* = tibialis anterior - * *Definition* = In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibialis_anterior_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://evolutionwiki.org/wiki/M._tibialis_cranialis] + * *Definition* = In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibialis_anterior_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://evolutionwiki.org/wiki/M._tibialis_cranialis ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * tibialis anterior muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001382] - * tibialis cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002395] + * tibialis anterior muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001382 ] + * tibialis cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002395 ] * tibilais cranialis - * anterior tibialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001382] - * ibialis anticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001382] - * musculus tibialis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibialis_anterior_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior tibialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001382 ] + * ibialis anticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001382 ] + * musculus tibialis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibialis_anterior_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:22532 * MA:0002395 * SCTID:181696007 - * UMLS:C1710423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tibialis_Cranialis] + * UMLS:C1710423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tibialis_Cranialis ] * Wikipedia:Tibialis_anterior_muscle * galen:TibialisAnterior * http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001485.md b/md/UBERON/85/UBERON_0001485.md index 4017435dcd..c5eae6f8b7 100644 --- a/md/UBERON/85/UBERON_0001485.md +++ b/md/UBERON/85/UBERON_0001485.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001485 * *Label* = knee joint - * *Definition* = The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Knee] + * *Definition* = The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Knee ] ## Synonyms - * joint of knee [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulatio genus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Knee[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * joint of knee [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulatio genus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Knee, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A02.835.583.475 * OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA * SCTID:182204005 - * UMLS:C0022745 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Knee_Joint] + * UMLS:C0022745 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Knee_Joint ] * VHOG:0001003 * Wikipedia:Knee * galen:KneeJoint @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [connects](../../ts/core#connects.md) some [patella](../../UBERON/46/UBERON_0002446.md) and [connects](../../ts/core#connects.md) some [tibia](../../UBERON/79/UBERON_0000979.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001585.md b/md/UBERON/85/UBERON_0001585.md index 9246ff119b..bd348b79d8 100644 --- a/md/UBERON/85/UBERON_0001585.md +++ b/md/UBERON/85/UBERON_0001585.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001585 * *Label* = anterior vena cava - * *Definition* = Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vena_cava] + * *Definition* = Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vena_cava ] * *Comment* = The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green). ## Synonyms - * superior vena cava [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4720] - * cranial vena cava [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001195] - * vena cava superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002683] - * vena cava superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vena_cava[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vena maxima [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_vena_cava[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior vena cava [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4720 ] + * cranial vena cava [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001195 ] + * vena cava superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002683 ] + * vena cava superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vena_cava, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vena maxima [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_vena_cava, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0000481 * MESH:A07.231.908.949.815 * SCTID:181368006 - * UMLS:C0042459 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Vena_Cava] + * UMLS:C0042459 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Vena_Cava ] * VHOG:0001195 * Wikipedia:Superior_vena_cava * galen:SuperiorVenaCava @@ -51,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetic modifications within this basic pattern of arteries and veins are largely correlated with functional changes. In the transition from water to land, gills gave way to lungs, accompanied by the establishment of a pulmonary circulation. In some fishes and certainly in tetrapods, the cardinal veins become less involved in blood return. Instead, the composite, prominent postcava (posterior vena cava) arose to drain the posterior part of the body and the precava (anterior vena cava) developed to drain the anterior part of the body.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001685.md b/md/UBERON/85/UBERON_0001685.md index ce619856e8..7a9bc6fd33 100644 --- a/md/UBERON/85/UBERON_0001685.md +++ b/md/UBERON/85/UBERON_0001685.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001685 * *Label* = hyoid bone - * *Definition* = The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (?). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] + * *Definition* = The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (?). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] * *Comment* = Taxon notes: The hyoid bone is derived from the lower half of the second gill arch in fish, which separates the first gill slit from the spiracle. In many animals, it also incorporates elements of other gill arches, and has a correspondingly greater number of cornua. Amphibians and reptiles may have many cornua, while mammals (including humans) have two pairs, and birds only one. In birds, and some reptiles, the body of the hyoid is greatly extended forward, creating a solid bony support for the tongue. The howler monkey Alouatta has a pneumatized hyoid bone, one of the few cases of postcranial pneumatization of bones outside Saurischia.[WP] ## Synonyms - * hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * hyoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * lingual bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * os hyoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os hyoideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] + * hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * hyoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * lingual bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * os hyoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * os hyoideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001484 * MESH:A02.835.232.409 * SCTID:263352000 - * UMLS:C0020417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hyoid_Bone] + * UMLS:C0020417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hyoid_Bone ] * VHOG:0001325 * Wikipedia:Hyoid_bone * http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes are the ossified posteromedial processes and invest the laryngeal apparatus.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of hyoid plate (AAO:0000664)[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001785.md b/md/UBERON/85/UBERON_0001785.md index ae77ae6f68..98ad499995 100644 --- a/md/UBERON/85/UBERON_0001785.md +++ b/md/UBERON/85/UBERON_0001785.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001785 * *Label* = cranial nerve - * *Definition* = Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord. In humans, there are traditionally twelve pairs of cranial nerves. Only the first and the second pair emerge from the cerebrum; the remaining ten pairs emerge from the brainstem[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_nerve] + * *Definition* = Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord. In humans, there are traditionally twelve pairs of cranial nerves. Only the first and the second pair emerge from the cerebrum; the remaining ten pairs emerge from the brainstem[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_nerve ] * *Comment* = Editors note: classified as neural tree organ, not nerve in FMA. CN II poses a challenge here as it is not strictly a nerve, yet is expected to be classified under CN. Note EMAPA subdivides nerve into CNS nerve and PNS nerve, with *all* cranial nerves classified as CNS nerves. ## Synonyms * cranial neural tree organ * cranial nerves - * nervus cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,9 +29,9 @@ * OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA * SCTID:244447006 * TAO:0000641 - * UMLS:C0010268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1623] - * UMLS:C0010268 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cranial_Nerve] - * UMLS:C1269897 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1623] + * UMLS:C0010268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1623 ] + * UMLS:C0010268 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cranial_Nerve ] + * UMLS:C1269897 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1623 ] * VHOG:0000279 * Wikipedia:Cranial_nerve * XAO:0000429 @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (...) (5) cranial nerves (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001885.md b/md/UBERON/85/UBERON_0001885.md index 8ec58757ef..2202bb8252 100644 --- a/md/UBERON/85/UBERON_0001885.md +++ b/md/UBERON/85/UBERON_0001885.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001885 * *Label* = dentate gyrus of hippocampal formation - * *Definition* = Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1178] + * *Definition* = Part of the hippocampal formation forming a 'V' or 'U' shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1178 ] * *Comment* = BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development ## Synonyms @@ -11,9 +11,9 @@ * area dentata * dentate gyrus * fascia dentata - * gyrus dentatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002496] - * gyrus dentatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentate_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hippocampal dentate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002496] + * gyrus dentatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002496 ] + * gyrus dentatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentate_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hippocampal dentate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002496 ] ## Cross-references @@ -31,7 +31,7 @@ * NIF_GrossAnatomy:birnlex_1178 * NeuroNames:179 * SCTID:279211002 - * UMLS:C0152314 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dentate_Gyrus] + * UMLS:C0152314 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dentate_Gyrus ] * Wikipedia:Dentate_gyrus * http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/HippocampalRegions.jpg/200px-HippocampalRegions.jpg @@ -56,8 +56,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO][GO:0021542]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0001985.md b/md/UBERON/85/UBERON_0001985.md index 1f7d9bfad9..3b297f3b87 100644 --- a/md/UBERON/85/UBERON_0001985.md +++ b/md/UBERON/85/UBERON_0001985.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001985 * *Label* = corneal endothelium - * *Definition* = A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_endothelium] + * *Definition* = A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_endothelium ] ## Synonyms - * cornea endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of cornea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium posterius corneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Corneal_endothelium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cornea endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of cornea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium posterius corneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Corneal_endothelium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A09.371.060.067.318 * SCTID:368827009 * TAO:0002186 - * UMLS:C0014259 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Corneal_Endothelium] + * UMLS:C0014259 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Corneal_Endothelium ] * Wikipedia:Corneal_endothelium * ZFA:0001687 * http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cornea](../../UBERON/64/UBERON_0000964.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002085.md b/md/UBERON/85/UBERON_0002085.md index 66fca2572f..a078bfe77b 100644 --- a/md/UBERON/85/UBERON_0002085.md +++ b/md/UBERON/85/UBERON_0002085.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002085 * *Label* = interatrial septum - * *Definition* = Cardiac septum which separates the right atrium from the left atrium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interatrial_septum] + * *Definition* = Cardiac septum which separates the right atrium from the left atrium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interatrial_septum ] ## Synonyms @@ -21,7 +21,7 @@ * OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ * OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA * SCTID:362016003 - * UMLS:C0225836 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interatrial_Septum] + * UMLS:C0225836 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interatrial_Septum ] * VHOG:0000385 * Wikipedia:Interatrial_septum * galen:InteratrialSeptum @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [left cardiac atrium](../../UBERON/79/UBERON_0002079.md) and [adjacent to](../../RO/20/RO_0002220.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) and [cardiac septum](../../UBERON/99/UBERON_0002099.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The partition separating the right and left atria of the heart. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002185.md b/md/UBERON/85/UBERON_0002185.md index b8e449d5c6..f7d59ebc17 100644 --- a/md/UBERON/85/UBERON_0002185.md +++ b/md/UBERON/85/UBERON_0002185.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002185 * *Label* = bronchus - * *Definition* = A portion of the airway that connects to the lungs[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchus] + * *Definition* = A portion of the airway that connects to the lungs[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchus ] * *Comment* = In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue ## Synonyms - * bronchi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7409] - * bronchial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001340] + * bronchi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7409 ] + * bronchial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001340 ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A04.411.125 * MIAA:0000133 * SCTID:181215002 - * UMLS:C0006255 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus] + * UMLS:C0006255 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus ] * VHOG:0000262 * Wikipedia:Bronchus * XAO:0000121 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = bronchial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002285.md b/md/UBERON/85/UBERON_0002285.md index 7415f821f1..9bce96d47a 100644 --- a/md/UBERON/85/UBERON_0002285.md +++ b/md/UBERON/85/UBERON_0002285.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002285 * *Label* = telencephalic ventricle - * *Definition* = A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_ventricle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A brain ventricle that is part of a telencephalon. In mammals and species with an evaginated telencephalon, this is one of a pair of lateral structures, one in each hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_ventricle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = modeled as space in EHDAA2 ## Synonyms - * lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000192[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * telencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000643[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000696] - * telencephalon lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001984] - * Motor nucleus of trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V] - * Telencephalic ventricles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Tel-V] + * lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000192, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * telencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000643, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000696 ] + * telencephalon lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001984 ] + * Motor nucleus of trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V ] + * Telencephalic ventricles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Tel-V ] * forebrain ventricle - * lateral ventricle of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000879] + * lateral ventricle of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000879 ] * tectal ventricle - * telencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000696] - * ventrolateral complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VL] + * telencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000696 ] + * ventrolateral complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VL ] ## Cross-references @@ -42,8 +42,8 @@ * OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA * SCTID:180930008 * TAO:0000696 - * UMLS:C0152279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1263] - * UMLS:C0152279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Ventricle] + * UMLS:C0152279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1263 ] + * UMLS:C0152279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Ventricle ] * VHOG:0000643 * Wikipedia:Lateral_ventricle * ZFA:0000696 @@ -65,7 +65,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [brain ventricle](../../UBERON/86/UBERON_0004086.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms @@ -76,8 +76,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002385.md b/md/UBERON/85/UBERON_0002385.md index 8c2b0c1126..66e717aaf0 100644 --- a/md/UBERON/85/UBERON_0002385.md +++ b/md/UBERON/85/UBERON_0002385.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002385 * *Label* = muscle tissue - * *Definition* = Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060537[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Muscle_tissue[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764] + * *Definition* = Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060537, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Muscle_tissue, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764 ] * *Comment* = Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. ## Synonyms - * muscular tissue [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * portion of muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9641] + * muscular tissue [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * portion of muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9641 ] * textus muscularis ## Cross-references @@ -22,7 +22,7 @@ * MA:0002437 * MESH:A02.633 * SCTID:91727004 - * UMLS:C2328219 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Muscle_Tissue] + * UMLS:C2328219 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Muscle_Tissue ] * Wikipedia:Muscle_tissue * galen:MuscleTissue * ncithesaurus:Muscle_Tissue @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [muscle cell](../../CL/87/CL_0000187.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002485.md b/md/UBERON/85/UBERON_0002485.md index e864389c66..af0e64e66f 100644 --- a/md/UBERON/85/UBERON_0002485.md +++ b/md/UBERON/85/UBERON_0002485.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002485 * *Label* = prostate duct - * *Definition* = the minute canals that pass the prostatic secretions to the urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009734] + * *Definition* = the minute canals that pass the prostatic secretions to the urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009734 ] ## Synonyms @@ -18,7 +18,7 @@ * FMA:19580 * MA:0002785 * SCTID:362276000 - * UMLS:C0227965 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Duct] + * UMLS:C0227965 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Duct ] * ncithesaurus:Prostatic_Duct ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [duct](../../UBERON/58/UBERON_0000058.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002585.md b/md/UBERON/85/UBERON_0002585.md index 31bffaa962..d96872c343 100644 --- a/md/UBERON/85/UBERON_0002585.md +++ b/md/UBERON/85/UBERON_0002585.md @@ -6,18 +6,18 @@ ## Synonyms - * ctgmb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1081[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * central tegmental tract of the midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:528] - * tractus tegmentalis centralis (mesencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:528[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ctgmb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1081, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * central tegmental tract of the midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:528 ] + * tractus tegmentalis centralis (mesencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:528, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ctgmb * FMA:72456 * NIF_GrossAnatomy:birnlex_1081 - * NeuroNames:528 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1081] + * NeuroNames:528 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1081 ] * SCTID:369243000 - * UMLS:C0152364 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1081] + * UMLS:C0152364 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1081 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002685.md b/md/UBERON/85/UBERON_0002685.md index 6220668dac..321a0a2e4c 100644 --- a/md/UBERON/85/UBERON_0002685.md +++ b/md/UBERON/85/UBERON_0002685.md @@ -6,22 +6,22 @@ ## Synonyms - * anterior ventral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62143] - * anteroprincipal thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62143] - * anteroventral nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62143] - * anteroventral nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * anteroventral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62143] - * nucleus anterior thalami ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus anterior ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus anteroinferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus anteroventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus anteroventralis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus thalamicus anteroprincipalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * nucleus thalamicus anteroventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1372] - * AV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1372[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus anterior principalis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:305[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral anterior nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VA] - * ventroanterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VA] + * anterior ventral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62143 ] + * anteroprincipal thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62143 ] + * anteroventral nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62143 ] + * anteroventral nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * anteroventral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62143 ] + * nucleus anterior thalami ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus anterior ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus anteroinferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus anteroventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus anteroventralis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus thalamicus anteroprincipalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * nucleus thalamicus anteroventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1372 ] + * AV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1372, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus anterior principalis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:305, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral anterior nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VA ] + * ventroanterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VA ] ## Cross-references @@ -35,9 +35,9 @@ * EV:0100199 * FMA:62143 * NIF_GrossAnatomy:birnlex_1372 - * NeuroNames:305 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1372] + * NeuroNames:305 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1372 ] * SCTID:279130009 - * UMLS:C0752050 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1372] + * UMLS:C0752050 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1372 ] ## Subsets @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002785.md b/md/UBERON/85/UBERON_0002785.md index 62fbb29430..85ba67e966 100644 --- a/md/UBERON/85/UBERON_0002785.md +++ b/md/UBERON/85/UBERON_0002785.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002785 * *Label* = regional part of lateral hypothalamic region - * *Definition* = A multi-tissue structure that is part of a lateral hypothalamic area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that is part of a lateral hypothalamic area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral hypothalamic region segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62312] - * segment of lateral hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1687] + * lateral hypothalamic region segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62312 ] + * segment of lateral hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1687 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral hypothalamic area](../../UBERON/30/UBERON_0002430.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002885.md b/md/UBERON/85/UBERON_0002885.md index 3e4f14b44d..619eb4dac7 100644 --- a/md/UBERON/85/UBERON_0002885.md +++ b/md/UBERON/85/UBERON_0002885.md @@ -6,18 +6,18 @@ ## Synonyms - * accessory basal nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2686] - * basal amygdaloid nucleus, medial part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2686] - * basomedial nucleus (de olmos) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2686] - * accessory basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249] - * accessory basal nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249] - * basomedial nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249] - * basomedial nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249] - * medial principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2686] - * nucleus amygdalae basalis accessorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basomedialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis accessorius amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:249[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * accessory basal nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2686 ] + * basal amygdaloid nucleus, medial part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2686 ] + * basomedial nucleus (de olmos) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2686 ] + * accessory basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249 ] + * accessory basal nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249 ] + * basomedial nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249 ] + * basomedial nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249 ] + * medial principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2686 ] + * nucleus amygdalae basalis accessorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basomedialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis accessorius amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:249, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,8 +25,8 @@ * BAMS:BAM * FMA:61867 * NIF_GrossAnatomy:birnlex_2686 - * NeuroNames:249 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2686] - * UMLS:C0175223 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2686] + * NeuroNames:249 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2686 ] + * UMLS:C0175223 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2686 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0002985.md b/md/UBERON/85/UBERON_0002985.md index 8174cc8eb3..a8bab2d230 100644 --- a/md/UBERON/85/UBERON_0002985.md +++ b/md/UBERON/85/UBERON_0002985.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002985 * *Label* = ventral nucleus of medial geniculate body - * *Definition* = Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_845] + * *Definition* = Ventral division of medial geniculate body, first described by Morest (1964) in the cat, but found in primate, mouse and rat as well. It begins midway in the posterior third of the medial geniculate in the cat and is prominant anteriorly. The boundary between the dorsal and ventral divisions is demarcated in rat by a thick horizontally oriented axon bundle, the midgeniculate bundle (Webster, 1995, fig 16). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_845 ] ## Synonyms - * medial geniculate complex, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62217] - * medial geniculate nucleus, ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62217] - * medial nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_845] - * nucleus corporis geniculati medialis, pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_845] - * nucleus geniculatus medialis fasciculosus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_845] - * nucleus geniculatus medialis pars ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_845] - * nucleus ventralis corporis geniculati medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62217[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral nucleus of medial geniculate complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62217] - * ventral principal nucleus of medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62217] - * MGV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_845[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * VMG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_845[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * medial geniculate complex ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGv] - * medial geniculate nucleus ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MGv] - * ventral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:357] - * ventral nucleus of the medial geniculate body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:357] + * medial geniculate complex, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62217 ] + * medial geniculate nucleus, ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62217 ] + * medial nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_845 ] + * nucleus corporis geniculati medialis, pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_845 ] + * nucleus geniculatus medialis fasciculosus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_845 ] + * nucleus geniculatus medialis pars ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_845 ] + * nucleus ventralis corporis geniculati medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62217, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral nucleus of medial geniculate complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62217 ] + * ventral principal nucleus of medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62217 ] + * MGV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_845, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * VMG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_845, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * medial geniculate complex ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGv ] + * medial geniculate nucleus ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MGv ] + * ventral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:357 ] + * ventral nucleus of the medial geniculate body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:357 ] ## Cross-references @@ -33,8 +33,8 @@ * BTO:0002671 * FMA:62217 * NIF_GrossAnatomy:birnlex_845 - * NeuroNames:357 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_845] - * UMLS:C0175295 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_845] + * NeuroNames:357 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_845 ] + * UMLS:C0175295 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_845 ] ## Subsets @@ -52,8 +52,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003085.md b/md/UBERON/85/UBERON_0003085.md index 6a66daac43..8dcd458e49 100644 --- a/md/UBERON/85/UBERON_0003085.md +++ b/md/UBERON/85/UBERON_0003085.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003085 * *Label* = ventral aorta - * *Definition* = The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta[BTO]. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004674[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035908] + * *Definition* = The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta[BTO]. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004674, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035908 ] * *Comment* = Taxon notes (via vHOG): "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong] ## Synonyms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Outflow artery from the heart to the aortic arches. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003185.md b/md/UBERON/85/UBERON_0003185.md index 67bd3d2a82..9bd812c559 100644 --- a/md/UBERON/85/UBERON_0003185.md +++ b/md/UBERON/85/UBERON_0003185.md @@ -7,7 +7,7 @@ ## Synonyms - * metathoracic sternal apophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004638] + * metathoracic sternal apophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004638 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004638 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000592 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003185 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_0003285.md b/md/UBERON/85/UBERON_0003285.md index efaade48ba..e799f03e4d 100644 --- a/md/UBERON/85/UBERON_0003285.md +++ b/md/UBERON/85/UBERON_0003285.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0002101 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003285 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_0003385.md b/md/UBERON/85/UBERON_0003385.md index 48e8da52ce..85d0f295d4 100644 --- a/md/UBERON/85/UBERON_0003385.md +++ b/md/UBERON/85/UBERON_0003385.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = EMAPA:19066 * *[consider](../../er/oboInOwl#consider.md)* = EMAPA:19071 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003385 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_0003485.md b/md/UBERON/85/UBERON_0003485.md index 448177b873..9806c1ac52 100644 --- a/md/UBERON/85/UBERON_0003485.md +++ b/md/UBERON/85/UBERON_0003485.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003485 * *Label* = vagina sebaceous gland - * *Definition* = A sebaceous gland that is part of a vagina [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sebaceous gland that is part of a vagina [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sebaceous gland of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * sebaceous gland of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003585.md b/md/UBERON/85/UBERON_0003585.md index d1800bc380..cdd91ec4e6 100644 --- a/md/UBERON/85/UBERON_0003585.md +++ b/md/UBERON/85/UBERON_0003585.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003585 * *Label* = dermis connective tissue - * *Definition* = A portion of connective tissue that is part of a dermis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a dermis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dermis portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dermis textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dermis portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dermis textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dermis](../../UBERON/67/UBERON_0002067.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003685.md b/md/UBERON/85/UBERON_0003685.md index d204e02a10..7fdbf32d35 100644 --- a/md/UBERON/85/UBERON_0003685.md +++ b/md/UBERON/85/UBERON_0003685.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003685 * *Label* = cranial suture - * *Definition* = Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71385[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suture_(joint)] + * *Definition* = Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71385, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suture_(joint) ] ## Synonyms - * cranium suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cranium suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * sutura - * suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71385] + * suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71385 ] * suture joint of skull - * suture of cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * suture of cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fibrous joint](../../UBERON/09/UBERON_0002209.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cranium](../../UBERON/28/UBERON_0003128.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71385 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003885.md b/md/UBERON/85/UBERON_0003885.md index 1af08613c1..8bc4eac706 100644 --- a/md/UBERON/85/UBERON_0003885.md +++ b/md/UBERON/85/UBERON_0003885.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003885 * *Label* = mesometrium - * *Definition* = A mesentery that is part of a uterus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a uterus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesentery of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19816[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002931[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] + * mesentery of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19816, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002931, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0003985.md b/md/UBERON/85/UBERON_0003985.md index 9f6492f947..c6a0a23d06 100644 --- a/md/UBERON/85/UBERON_0003985.md +++ b/md/UBERON/85/UBERON_0003985.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003985 * *Label* = major sublingual duct - * *Definition* = the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009528] + * *Definition* = the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009528 ] ## Synonyms - * Bartholin's duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59986[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * Bartholin's duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59986, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004085.md b/md/UBERON/85/UBERON_0004085.md index c79a55e0d5..ea587654df 100644 --- a/md/UBERON/85/UBERON_0004085.md +++ b/md/UBERON/85/UBERON_0004085.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004085 * *Label* = labium majora - * *Definition* = The labia majora are two prominent longitudinal cutaneous folds which extend downward and backward from the mons pubis to the perineum and form the lateral boundaries of the cleft of venus, which contains the labia minora, interlabial sulci, clitoral hood, clitoral glans, frenulum clitoridis, the Hart's Line, and the vulval vestibule, which contains the external openings of the urethra and the vagina. Each labium majus has two surfaces, an outer, pigmented and covered with strong, crisp hairs; and an inner, smooth and beset with large sebaceous follicles. Between the two there is a considerable quantity of areolar tissue, fat, and a tissue resembling the dartos tunic of the scrotum, besides vessels, nerves, and glands. The Labia Majora are thicker in front, where they form by their meeting the anterior commisure of the labia majora. Posteriorly they are not really joined, but appear to become lost in the neighboring integument, ending close to and nearly parallel with each other. Together with the connecting skin between them, they form the posterior commisure of the labia majora or posterior boundary of the pudendum. The interval between the posterior commissure of the labia majora and the anus, from 2.5 to 3 cm. in length, constitutes the perineum. The labia majora correspond to the scrotum in the male. Between the labia majora and the inner thighs are the labiocrural folds. Between the labia majora and labia minora are the interlabial sulci. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labia_majora] + * *Definition* = The labia majora are two prominent longitudinal cutaneous folds which extend downward and backward from the mons pubis to the perineum and form the lateral boundaries of the cleft of venus, which contains the labia minora, interlabial sulci, clitoral hood, clitoral glans, frenulum clitoridis, the Hart's Line, and the vulval vestibule, which contains the external openings of the urethra and the vagina. Each labium majus has two surfaces, an outer, pigmented and covered with strong, crisp hairs; and an inner, smooth and beset with large sebaceous follicles. Between the two there is a considerable quantity of areolar tissue, fat, and a tissue resembling the dartos tunic of the scrotum, besides vessels, nerves, and glands. The Labia Majora are thicker in front, where they form by their meeting the anterior commisure of the labia majora. Posteriorly they are not really joined, but appear to become lost in the neighboring integument, ending close to and nearly parallel with each other. Together with the connecting skin between them, they form the posterior commisure of the labia majora or posterior boundary of the pudendum. The interval between the posterior commissure of the labia majora and the anus, from 2.5 to 3 cm. in length, constitutes the perineum. The labia majora correspond to the scrotum in the male. Between the labia majora and the inner thighs are the labiocrural folds. Between the labia majora and labia minora are the interlabial sulci. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labia_majora ] ## Synonyms * labia majorum * labium majora - * labium majorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002844] + * labium majorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002844 ] * labium majus - * labium majus pudendi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Labia_majora[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * labium majus pudendi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Labia_majora, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20367 * MA:0002844 * SCTID:362237001 - * UMLS:C0227760 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Labium_Majus] + * UMLS:C0227760 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Labium_Majus ] * Wikipedia:Labia_majora * galen:LabiaMajora * http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004185.md b/md/UBERON/85/UBERON_0004185.md index ac4be2197f..58af5f6d12 100644 --- a/md/UBERON/85/UBERON_0004185.md +++ b/md/UBERON/85/UBERON_0004185.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004185 * *Label* = endodermal part of digestive tract - * *Definition* = A portions of the gut that is derived from endoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061031] + * *Definition* = A portions of the gut that is derived from endoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061031 ] ## Synonyms * endodermal gut - * gut endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:32930] + * gut endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:32930 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [endoderm](../../UBERON/25/UBERON_0000925.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digestive tract](../../UBERON/55/UBERON_0001555.md) and [subdivision of digestive tract](../../UBERON/21/UBERON_0004921.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004385.md b/md/UBERON/85/UBERON_0004385.md index 164fd4c6e4..76a5587691 100644 --- a/md/UBERON/85/UBERON_0004385.md +++ b/md/UBERON/85/UBERON_0004385.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004385 * *Label* = epiphysis of radius - * *Definition* = An epiphysis that is part of a radius [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a radius [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * radial epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33770] + * radial epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33770 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [radius bone](../../UBERON/23/UBERON_0001423.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004685.md b/md/UBERON/85/UBERON_0004685.md index e747323650..0cede18608 100644 --- a/md/UBERON/85/UBERON_0004685.md +++ b/md/UBERON/85/UBERON_0004685.md @@ -6,8 +6,8 @@ ## Synonyms - * middle temporal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68618] - * middle temporal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_20090308] + * middle temporal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68618 ] + * middle temporal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_20090308 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004785.md b/md/UBERON/85/UBERON_0004785.md index 551f1bbc7f..4b54507970 100644 --- a/md/UBERON/85/UBERON_0004785.md +++ b/md/UBERON/85/UBERON_0004785.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004785 * *Label* = respiratory system mucosa - * *Definition* = A mucosa that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO - split respiratory tract mucosa from respiratory system mucosa ## Synonyms - * apparatus respiratorius mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000973] + * apparatus respiratorius mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000973 ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004885.md b/md/UBERON/85/UBERON_0004885.md index bae7db8f54..01284057b6 100644 --- a/md/UBERON/85/UBERON_0004885.md +++ b/md/UBERON/85/UBERON_0004885.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004885 * *Label* = hilum - * *Definition* = An anatomical cavity, depression or pit where structures are attached. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hilum_of_kidney_of_lung_of_lymph_node] + * *Definition* = An anatomical cavity, depression or pit where structures are attached. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hilum_of_kidney_of_lung_of_lymph_node ] * *Comment* = AO notes: Galen and NCITA refer to the generic structure ## Synonyms - * hilus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hilum] + * hilus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hilum ] ## Cross-references * FMA:57836 - * UMLS:C0929176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hilum] + * UMLS:C0929176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hilum ] * Wikipedia:Hilum_of_kidney_of_lung_of_lymph_node * galen:Hilum * ncithesaurus:Hilum @@ -34,8 +34,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004460 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0004985.md b/md/UBERON/85/UBERON_0004985.md index 08a5864725..74c4442ce6 100644 --- a/md/UBERON/85/UBERON_0004985.md +++ b/md/UBERON/85/UBERON_0004985.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004985 * *Label* = mucosa of ejaculatory duct - * *Definition* = A mucosa that is part of a ejaculatory duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a ejaculatory duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ejaculatory duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ejaculatory duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ejaculatory duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ejaculatory duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ejaculatory ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19373] - * mucosa of organ of ejaculatory duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ejaculatory duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ejaculatory duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ejaculatory duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ejaculatory duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ejaculatory duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ejaculatory duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ejaculatory ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19373 ] + * mucosa of organ of ejaculatory duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ejaculatory duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ejaculatory duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ejaculatory duct](../../UBERON/99/UBERON_0000999.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005085.md b/md/UBERON/85/UBERON_0005085.md index 56617d0d89..9e082671f3 100644 --- a/md/UBERON/85/UBERON_0005085.md +++ b/md/UBERON/85/UBERON_0005085.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005085 * *Label* = ectodermal placode - * *Definition* = An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060788] + * *Definition* = An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060788 ] * *Comment* = Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm // AO notes: in GO, covers optic, otic, olfactory, mammary, hair, tooth, sebaceous ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [ectoderm](../../UBERON/24/UBERON_0000924.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005185.md b/md/UBERON/85/UBERON_0005185.md index 92d940952d..4d4b2b6e07 100644 --- a/md/UBERON/85/UBERON_0005185.md +++ b/md/UBERON/85/UBERON_0005185.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005185 * *Label* = renal medulla collecting duct - * *Definition* = A collecting duct of renal tubule that is part of a renal medulla [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collecting duct of renal tubule that is part of a renal medulla [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney medulla collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002935] - * medullary collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28061] + * kidney medulla collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002935 ] + * medullary collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28061 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal medulla](../../UBERON/62/UBERON_0000362.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005385.md b/md/UBERON/85/UBERON_0005385.md index 07caf2f6ce..16897500b9 100644 --- a/md/UBERON/85/UBERON_0005385.md +++ b/md/UBERON/85/UBERON_0005385.md @@ -12,7 +12,7 @@ * EHDAA2:0001230 * EHDAA:6807 * MA:0001326 - * UMLS:C1709152 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasal_Cavity_Respiratory_Epithelium] + * UMLS:C1709152 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasal_Cavity_Respiratory_Epithelium ] * ncithesaurus:Nasal_Cavity_Respiratory_Epithelium ## Subsets @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005485.md b/md/UBERON/85/UBERON_0005485.md index efc179b743..f05d70ce45 100644 --- a/md/UBERON/85/UBERON_0005485.md +++ b/md/UBERON/85/UBERON_0005485.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005485 * *Label* = valve of inferior vena cava - * *Definition* = The valve of the inferior vena cava (eustachian valve) lies at the junction of the inferior vena cava and right atrium. In fetal life, the Eustachian valve helps direct the flow of oxygen-rich blood through the right atrium into the left cardiac atrium via the foramen ovale (preventing blood flowing into the right ventricle). Before birth, oxygen rich blood returning from the placenta mixes with blood from the hepatic veins in the inferior vena cava. Streaming this blood across the atrial septum via the foramen ovale increases the oxygen content of blood in the left atrium. This in turn increases the oxygen concentration of blood in the left ventricle, the aorta, the coronary circulation and the circulation of the developing brain. Following birth and separation from the placenta, the oxygen content in the inferior vena cava falls. With the onset of breathing, the left atrium receives oxygen-rich blood from the lungs via the pulmonary veins. As blood flow to the lungs increases, the amount of blood flow entering the left atrium increases. When the pressure in the left atrium exceeds the pressure in the right atrium, the foramen ovale begins to close and limits the blood flow between the left and right atrium. While the Eustachian valve persists in adult life, it is essentially vestigial. Eustachian Valve (EV), also called valvulae venae cavae inferioris, was described for the first time by the Italian anatomist: Bartolomeo Eustachi (born between 1500 and 1513, died 1574). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Valve_of_inferior_vena_cava] + * *Definition* = The valve of the inferior vena cava (eustachian valve) lies at the junction of the inferior vena cava and right atrium. In fetal life, the Eustachian valve helps direct the flow of oxygen-rich blood through the right atrium into the left cardiac atrium via the foramen ovale (preventing blood flowing into the right ventricle). Before birth, oxygen rich blood returning from the placenta mixes with blood from the hepatic veins in the inferior vena cava. Streaming this blood across the atrial septum via the foramen ovale increases the oxygen content of blood in the left atrium. This in turn increases the oxygen concentration of blood in the left ventricle, the aorta, the coronary circulation and the circulation of the developing brain. Following birth and separation from the placenta, the oxygen content in the inferior vena cava falls. With the onset of breathing, the left atrium receives oxygen-rich blood from the lungs via the pulmonary veins. As blood flow to the lungs increases, the amount of blood flow entering the left atrium increases. When the pressure in the left atrium exceeds the pressure in the right atrium, the foramen ovale begins to close and limits the blood flow between the left and right atrium. While the Eustachian valve persists in adult life, it is essentially vestigial. Eustachian Valve (EV), also called valvulae venae cavae inferioris, was described for the first time by the Italian anatomist: Bartolomeo Eustachi (born between 1500 and 1513, died 1574). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Valve_of_inferior_vena_cava ] * *Comment* = editor note: this class should be subdivided into the embryonic structure and the vestigial adult remnant, a small endocardialfold ## Synonyms - * eustachean valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9240] - * eustachian valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9240] - * inferior vena cava valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9240] - * valve of the inferior vena cava [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Valve_of_inferior_vena_cava] - * valvula venae cavae inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Valve_of_inferior_vena_cava[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * eustachean valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9240 ] + * eustachian valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9240 ] + * inferior vena cava valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9240 ] + * valve of the inferior vena cava [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Valve_of_inferior_vena_cava ] + * valvula venae cavae inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Valve_of_inferior_vena_cava, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * EHDAA:8631 * FMA:9240 * SCTID:277722006 - * UMLS:C0225848 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eustachian_Valve] + * UMLS:C0225848 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eustachian_Valve ] * Wikipedia:Valve_of_inferior_vena_cava * http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png * ncithesaurus:Eustachian_Valve @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005585.md b/md/UBERON/85/UBERON_0005585.md index 204a026726..cbf8814009 100644 --- a/md/UBERON/85/UBERON_0005585.md +++ b/md/UBERON/85/UBERON_0005585.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005585 * *Label* = rhombomere 7 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000904] - * floor plate rhombomere 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000904] - * floorplate r7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000904] + * floor plate r7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000904 ] + * floor plate rhombomere 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000904 ] + * floorplate r7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000904 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 7](../../UBERON/23/UBERON_0005523.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005685.md b/md/UBERON/85/UBERON_0005685.md index 71dc28c8aa..91235536b0 100644 --- a/md/UBERON/85/UBERON_0005685.md +++ b/md/UBERON/85/UBERON_0005685.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005685 * *Label* = midgut dorsal mesentery - * *Definition* = A dorsal mesentery that is part of a midgut. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal mesentery that is part of a midgut. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal mesentery](../../UBERON/96/UBERON_0002296.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midgut](../../UBERON/45/UBERON_0001045.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0005985.md b/md/UBERON/85/UBERON_0005985.md index 27c33bd8b6..8e5bafbec7 100644 --- a/md/UBERON/85/UBERON_0005985.md +++ b/md/UBERON/85/UBERON_0005985.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005985 * *Label* = coronary vessel - * *Definition* = any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010551] + * *Definition* = any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010551 ] * *Comment* = TODO - change relation from part_of ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) and [vessel](../../UBERON/55/UBERON_0000055.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0006285.md b/md/UBERON/85/UBERON_0006285.md index af986c33ab..0cf6d8f5b3 100644 --- a/md/UBERON/85/UBERON_0006285.md +++ b/md/UBERON/85/UBERON_0006285.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [pubic endochondral element](../../UBERON/55/UBERON_0015055.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0006485.md b/md/UBERON/85/UBERON_0006485.md index 7350fdce6d..fc5e7135c3 100644 --- a/md/UBERON/85/UBERON_0006485.md +++ b/md/UBERON/85/UBERON_0006485.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006485 * *Label* = Brodmann (1909) area 48 - * *Definition* = Retrosubicular area 48 is a subdivision of the cytoarchitecturally defined hippocampal region of the cerebral cortex. In the human it is located on the medial surface of the temporal lobe. Cytoarchitectually it is bounded rostrally by the perirhinal area 35 and medially by the presubiculum. While described by Brodmann (Brodmann-1909), it was not included in his areal maps of human cortex (Brodmann-1909; Brodmann-1910). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brodmann_area_48] + * *Definition* = Retrosubicular area 48 is a subdivision of the cytoarchitecturally defined hippocampal region of the cerebral cortex. In the human it is located on the medial surface of the temporal lobe. Cytoarchitectually it is bounded rostrally by the perirhinal area 35 and medially by the presubiculum. While described by Brodmann (Brodmann-1909), it was not included in his areal maps of human cortex (Brodmann-1909; Brodmann-1910). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brodmann_area_48 ] ## Synonyms - * B09-48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1791] - * BA48 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1791] - * Brodmann area 48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81151] - * Brodmann area 48, retrosubicular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1791] - * Brodmann's area 48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81151] - * area 48 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81151] - * area retrosubicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1791] - * retrosubicular area 48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81151] - * B09-48 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1791[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1791 ] + * BA48 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1791 ] + * Brodmann area 48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81151 ] + * Brodmann area 48, retrosubicular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1791 ] + * Brodmann's area 48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81151 ] + * area 48 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81151 ] + * area retrosubicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1791 ] + * retrosubicular area 48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81151 ] + * B09-48 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1791, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -24,7 +24,7 @@ * NIF_GrossAnatomy:birnlex_1791 * NeuroNames:2116 * SCTID:384808004 - * UMLS:C1272514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1791] + * UMLS:C1272514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1791 ] * Wikipedia:Brodmann_area_48 ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0006585.md b/md/UBERON/85/UBERON_0006585.md index 7b0eb1cea8..41f18b8d97 100644 --- a/md/UBERON/85/UBERON_0006585.md +++ b/md/UBERON/85/UBERON_0006585.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006585 * *Label* = vestibular organ - * *Definition* = An organ that is part of a vestibular system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ that is part of a vestibular system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * balance organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * balance organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references * NIF_GrossAnatomy:birnlex_2519 - * UMLS:C0682674 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2519] + * UMLS:C0682674 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2519 ] ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ](../../UBERON/62/UBERON_0000062.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular system](../../UBERON/81/UBERON_0004681.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0006685.md b/md/UBERON/85/UBERON_0006685.md index 7d1303589d..7009b1f264 100644 --- a/md/UBERON/85/UBERON_0006685.md +++ b/md/UBERON/85/UBERON_0006685.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0006785.md b/md/UBERON/85/UBERON_0006785.md index db1eada127..c87d46802e 100644 --- a/md/UBERON/85/UBERON_0006785.md +++ b/md/UBERON/85/UBERON_0006785.md @@ -6,7 +6,7 @@ ## Synonyms - * gray matter layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77870] + * gray matter layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77870 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gray matter of neuraxis](../../UBERON/20/UBERON_0002020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus](../../UBERON/45/UBERON_0001945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0007185.md b/md/UBERON/85/UBERON_0007185.md index ce7793fb98..2cbf0e2265 100644 --- a/md/UBERON/85/UBERON_0007185.md +++ b/md/UBERON/85/UBERON_0007185.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007185 * *Label* = pericardio-peritoneal canal mesothelium - * *Definition* = A mesothelium that is part of a pericardio-peritoneal canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a pericardio-peritoneal canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pericardio-peritoneal canal mehomhelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000447] + * pericardio-peritoneal canal mehomhelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000447 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pericardio-peritoneal canal](../../UBERON/75/UBERON_0006275.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0007285.md b/md/UBERON/85/UBERON_0007285.md index 369bce1cbb..304abface3 100644 --- a/md/UBERON/85/UBERON_0007285.md +++ b/md/UBERON/85/UBERON_0007285.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007285 * *Label* = presumptive paraxial mesoderm - * *Definition* = A presumptive structure that has_potential_to_develop_into a paraxial mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a paraxial mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [paraxial mesoderm](../../UBERON/77/UBERON_0003077.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0007385.md b/md/UBERON/85/UBERON_0007385.md index f782b5ea4e..622c7c8faa 100644 --- a/md/UBERON/85/UBERON_0007385.md +++ b/md/UBERON/85/UBERON_0007385.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007385 * *Label* = pectoral appendage lymph vessel - * *Definition* = A lymphatic vessel that is part of a pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel that is part of a pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0007685.md b/md/UBERON/85/UBERON_0007685.md index b56e2bc85d..ec37012d10 100644 --- a/md/UBERON/85/UBERON_0007685.md +++ b/md/UBERON/85/UBERON_0007685.md @@ -7,8 +7,8 @@ ## Synonyms - * renal tubule region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17692] - * region of renal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17692] + * renal tubule region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17692 ] + * region of renal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17692 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0008285.md b/md/UBERON/85/UBERON_0008285.md index e2d53d0e11..6b14d276eb 100644 --- a/md/UBERON/85/UBERON_0008285.md +++ b/md/UBERON/85/UBERON_0008285.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008285 * *Label* = rumen epithelium - * *Definition* = The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001195[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:10764086] + * *Definition* = The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001195, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:10764086 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rumen](../../UBERON/65/UBERON_0007365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0008585.md b/md/UBERON/85/UBERON_0008585.md index e2bf5a6b8b..09b312cdf7 100644 --- a/md/UBERON/85/UBERON_0008585.md +++ b/md/UBERON/85/UBERON_0008585.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008585 * *Label* = levator veli palatini - * *Definition* = The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini] + * *Definition* = The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini ] ## Synonyms - * levator palati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini] - * levator veli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini] - * levator veli palatini muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini] - * levator velum palatini muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini] - * musculus levator veli palatini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_veli_palatini[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * levator palati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini ] + * levator veli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini ] + * levator veli palatini muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini ] + * levator velum palatini muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini ] + * musculus levator veli palatini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_veli_palatini, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0008785.md b/md/UBERON/85/UBERON_0008785.md index b7a63c94fd..eefdd9bcb1 100644 --- a/md/UBERON/85/UBERON_0008785.md +++ b/md/UBERON/85/UBERON_0008785.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008785 * *Label* = upper limb segment - * *Definition* = A limb segment that is part of a forelimb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A limb segment that is part of a forelimb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * free upper limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24876] - * free upper limb subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24876] - * segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24876] - * subdivision of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24876] + * free upper limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24876 ] + * free upper limb subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24876 ] + * segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24876 ] + * subdivision of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24876 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [limb segment](../../UBERON/29/UBERON_0002529.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0008885.md b/md/UBERON/85/UBERON_0008885.md index a183d077f7..49884ad019 100644 --- a/md/UBERON/85/UBERON_0008885.md +++ b/md/UBERON/85/UBERON_0008885.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008885 * *Label* = right putamen - * *Definition* = A putamen that is part of a right cerebral hemisphere. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A putamen that is part of a right cerebral hemisphere. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right cerebral hemisphere](../../UBERON/13/UBERON_0002813.md) and [putamen](../../UBERON/74/UBERON_0001874.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0009585.md b/md/UBERON/85/UBERON_0009585.md index f7e004f23e..fe65e72f55 100644 --- a/md/UBERON/85/UBERON_0009585.md +++ b/md/UBERON/85/UBERON_0009585.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009585 * *Label* = interdigital region mesenchyme - * *Definition* = Mesenchyme that is part of a interdigital region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a interdigital region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = influences identity of anterior digit[Dahn and Fallon 2000], likely via BMP4 ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region](../../UBERON/12/UBERON_0006012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0009885.md b/md/UBERON/85/UBERON_0009885.md index 861d101019..5f46c12e44 100644 --- a/md/UBERON/85/UBERON_0009885.md +++ b/md/UBERON/85/UBERON_0009885.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009885 * *Label* = interlobar artery - * *Definition* = One of a set of curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobar_arteries] + * *Definition* = One of a set of curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobar_arteries ] * *Comment* = FMA only has the set term ## Synonyms - * arteriae interlobares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * interlobar artery of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71637] + * arteriae interlobares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * interlobar artery of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71637 ] * kidney interlobar artery - * renal interlobar artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011355] - * arteriae interlobares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobar_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * interlobar arteries of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71637] - * set of interlobar arteries of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71637] + * renal interlobar artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011355 ] + * arteriae interlobares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobar_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * interlobar arteries of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71637 ] + * set of interlobar arteries of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71637 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0009985.md b/md/UBERON/85/UBERON_0009985.md index 73fea96685..df13e76b6d 100644 --- a/md/UBERON/85/UBERON_0009985.md +++ b/md/UBERON/85/UBERON_0009985.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009985 * *Label* = lateral condyle of femur - * *Definition* = The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_femur] + * *Definition* = The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_femur ] ## Synonyms - * c. lateralis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * c. lateralis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_femur] - * lateral condyle of the femur [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_femur] + * c. lateralis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_femur ] + * c. lateralis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral condyle of the femur [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_femur ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010185.md b/md/UBERON/85/UBERON_0010185.md index e23b3c1502..9d7a0c4d32 100644 --- a/md/UBERON/85/UBERON_0010185.md +++ b/md/UBERON/85/UBERON_0010185.md @@ -12,7 +12,7 @@ * EMAPA:17966 * SCTID:259261007 - * UMLS:C0227880 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Rete_Ovarii] + * UMLS:C0227880 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Rete_Ovarii ] * ncithesaurus:Rete_Ovarii ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010285.md b/md/UBERON/85/UBERON_0010285.md index ea34bbe72f..143c6cfb25 100644 --- a/md/UBERON/85/UBERON_0010285.md +++ b/md/UBERON/85/UBERON_0010285.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010285 * *Label* = midbrain basal plate - * *Definition* = Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000761] + * *Definition* = Portion of tissue that is dorsolateral to the floor plate and part of the midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000761 ] ## Synonyms - * basal plate midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000761] + * basal plate midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000761 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010585.md b/md/UBERON/85/UBERON_0010585.md index cc2bc79701..bc8f0ec775 100644 --- a/md/UBERON/85/UBERON_0010585.md +++ b/md/UBERON/85/UBERON_0010585.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010585 * *Label* = pedal digit phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a pedal digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a pedal digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000952] - * hind limb digit phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * foot phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000952 ] + * hind limb digit phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * hindlimb phalanx pre-cartilage condensation * pes phalanx pre-cartilage condensation - * foot digit phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * foot digit phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit mesenchyme](../../UBERON/55/UBERON_0005255.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010685.md b/md/UBERON/85/UBERON_0010685.md index 7f067a4ad9..db5a0ce2ea 100644 --- a/md/UBERON/85/UBERON_0010685.md +++ b/md/UBERON/85/UBERON_0010685.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010685 * *Label* = pedal digit phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a pedal digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a pedal digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit phalanx cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit phalanx cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit mesenchyme](../../UBERON/55/UBERON_0005255.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010885.md b/md/UBERON/85/UBERON_0010885.md index 3a83c39330..787203262f 100644 --- a/md/UBERON/85/UBERON_0010885.md +++ b/md/UBERON/85/UBERON_0010885.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010885 * *Label* = hindlimb cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage element](../../UBERON/44/UBERON_0007844.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0010985.md b/md/UBERON/85/UBERON_0010985.md index e4e1a42c63..e492185d5f 100644 --- a/md/UBERON/85/UBERON_0010985.md +++ b/md/UBERON/85/UBERON_0010985.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011085.md b/md/UBERON/85/UBERON_0011085.md index 6985400985..485ab81562 100644 --- a/md/UBERON/85/UBERON_0011085.md +++ b/md/UBERON/85/UBERON_0011085.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011085 * *Label* = palatoquadrate arch - * *Definition* = The dorsal portion of the first pharyngeal arch, comprising the upper jaw[ZFIN,VHOG]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/153] + * *Definition* = The dorsal portion of the first pharyngeal arch, comprising the upper jaw[ZFIN,VHOG]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/153 ] ## Synonyms - * dorsal visceral arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001272] - * upper pharyngeal jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001272] - * dorsal mandibular arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] - * dorsal pharyngeal arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] - * dorsal visceral arch 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] - * palatoquadrate arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] - * upper jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] - * upper pharyngeal jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000511] + * dorsal visceral arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001272 ] + * upper pharyngeal jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001272 ] + * dorsal mandibular arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] + * dorsal pharyngeal arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] + * dorsal visceral arch 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] + * palatoquadrate arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] + * upper jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] + * upper pharyngeal jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000511 ] ## Cross-references @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011185.md b/md/UBERON/85/UBERON_0011185.md index 924c9f5629..3d7e9b5eda 100644 --- a/md/UBERON/85/UBERON_0011185.md +++ b/md/UBERON/85/UBERON_0011185.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011185 * *Label* = gastrointestinal sphincter - * *Definition* = A sphincter muscle that is part of the gastrointestinal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sphincter muscle that is part of the gastrointestinal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms ## Cross-references - * UMLS:C1517464 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrointestinal_Sphincter] + * UMLS:C1517464 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrointestinal_Sphincter ] * ncithesaurus:Gastrointestinal_Sphincter ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011185 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011385.md b/md/UBERON/85/UBERON_0011385.md index 7d88900ddd..8e27126a59 100644 --- a/md/UBERON/85/UBERON_0011385.md +++ b/md/UBERON/85/UBERON_0011385.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011385 * *Label* = parotidoauricular muscle - * *Definition* = Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:1519] + * *Definition* = Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:1519 ] ## Synonyms - * parotidoauricular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002352] + * parotidoauricular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002352 ] * parotidoauricularis ## Cross-references * MA:0002352 - * UMLS:C1709470 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parotidoauricular] + * UMLS:C1709470 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parotidoauricular ] * ncithesaurus:Parotidoauricular ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011585.md b/md/UBERON/85/UBERON_0011585.md index c711df939f..cc23643d07 100644 --- a/md/UBERON/85/UBERON_0011585.md +++ b/md/UBERON/85/UBERON_0011585.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011585 * *Label* = cell condensation - * *Definition* = Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Editor notes: consider obsoleting, coordinate with VSAO ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011685.md b/md/UBERON/85/UBERON_0011685.md index 8cb1059292..de1b96937b 100644 --- a/md/UBERON/85/UBERON_0011685.md +++ b/md/UBERON/85/UBERON_0011685.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011685 * *Label* = preorbitalis muscle - * *Definition* = A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A jaw muscle arises near the orbit and tapers as it passes posteriorly to its insertion on the adductor mandibulae. Found in sharks. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011785.md b/md/UBERON/85/UBERON_0011785.md index cfaef86561..f09fd11be3 100644 --- a/md/UBERON/85/UBERON_0011785.md +++ b/md/UBERON/85/UBERON_0011785.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0011985.md b/md/UBERON/85/UBERON_0011985.md index c732f0a6fd..7ec83af51c 100644 --- a/md/UBERON/85/UBERON_0011985.md +++ b/md/UBERON/85/UBERON_0011985.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011985 * *Label* = infraorbital sinus - * *Definition* = an air-filled recess in the head of birds which lies lateral to the nasal cavity into which it opens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/infraorbital+sinus] + * *Definition* = an air-filled recess in the head of birds which lies lateral to the nasal cavity into which it opens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/infraorbital+sinus ] ## Synonyms - * sinus infraorbitalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sinus infraorbitalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011985 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0012085.md b/md/UBERON/85/UBERON_0012085.md index 405aafc4ee..d515a606f0 100644 --- a/md/UBERON/85/UBERON_0012085.md +++ b/md/UBERON/85/UBERON_0012085.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012085 * *Label* = lumen of tertiary bronchus - * *Definition* = An anatomical cavity that is part of a segmental bronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a segmental bronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lumen of segmental bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62593] - * segmental bronchial lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62593] + * lumen of segmental bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62593 ] + * segmental bronchial lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62593 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [segmental bronchus](../../UBERON/84/UBERON_0002184.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0012285.md b/md/UBERON/85/UBERON_0012285.md index ca3c1494dd..bc59c680a1 100644 --- a/md/UBERON/85/UBERON_0012285.md +++ b/md/UBERON/85/UBERON_0012285.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012285 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0012485.md b/md/UBERON/85/UBERON_0012485.md index 0dc8f294d0..bca88d3b27 100644 --- a/md/UBERON/85/UBERON_0012485.md +++ b/md/UBERON/85/UBERON_0012485.md @@ -6,7 +6,7 @@ ## Synonyms - * cloacal villi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cloacal villi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0013485.md b/md/UBERON/85/UBERON_0013485.md index eff132d054..b664d88bd5 100644 --- a/md/UBERON/85/UBERON_0013485.md +++ b/md/UBERON/85/UBERON_0013485.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013485 * *Label* = crypt of Lieberkuhn of colon - * *Definition* = An intestinal crypt that is located in the colon. The colonic crypts of Lieberkhn are straight and unbranched and lined largely with goblet cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intestinal crypt that is located in the colon. The colonic crypts of Lieberkhn are straight and unbranched and lined largely with goblet cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0013585.md b/md/UBERON/85/UBERON_0013585.md index 10abd2f266..e1394d95ff 100644 --- a/md/UBERON/85/UBERON_0013585.md +++ b/md/UBERON/85/UBERON_0013585.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013585 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0013685.md b/md/UBERON/85/UBERON_0013685.md index 53beb8580d..19fc81172d 100644 --- a/md/UBERON/85/UBERON_0013685.md +++ b/md/UBERON/85/UBERON_0013685.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013685 * *Label* = foramen of skull - * *Definition* = Anatomical space that is an opening in a bone of the skull. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Anatomical space that is an opening in a bone of the skull. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * cranial conduit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53165] + * cranial conduit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53165 ] * cranial foramen - * foramen of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramina_of_the_skull] - * foramina of the skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramina_of_the_skull[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * foramen of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramina_of_the_skull ] + * foramina of the skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramina_of_the_skull, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone foramen](../../UBERON/44/UBERON_0005744.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skull](../../UBERON/29/UBERON_0003129.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0014385.md b/md/UBERON/85/UBERON_0014385.md index 7d7fd17969..e334bfcdb6 100644 --- a/md/UBERON/85/UBERON_0014385.md +++ b/md/UBERON/85/UBERON_0014385.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014385 * *Label* = aryepiglottic fold - * *Definition* = The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_fold] + * *Definition* = The entrance of the larynx is a triangular opening, narrow in front, wide behind, and sloping obliquely downward and backward. It is bounded, in front, by the epiglottis; behind, by the apices of the arytenoid cartilages, the corniculate cartilages, and the interarytenoid notch; and on either side, by a fold of mucous membrane, enclosing ligamentous and muscular fibers, stretched between the side of the epiglottis and the apex of the arytenoid cartilage; this is the aryepiglottic fold, on the posterior part of the margin of which the cuneiform cartilage forms a more or less distinct whitish prominence, the cuneiform tubercle. These folds form the upper borders of the quadrangular membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_fold ] ## Synonyms - * ary-epiglottic fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55448] - * aryepiglottic folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_fold] - * aryepiglottic sphincter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_fold] - * aryepiglottis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_fold] - * plica aryepiglottica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aryepiglottic_fold[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ary-epiglottic fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55448 ] + * aryepiglottic folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_fold ] + * aryepiglottic sphincter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_fold ] + * aryepiglottis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_fold ] + * plica aryepiglottica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aryepiglottic_fold, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:55448 * SCTID:245503009 - * UMLS:C1510944 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aryteno-epiglottic_Fold] + * UMLS:C1510944 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aryteno-epiglottic_Fold ] * Wikipedia:Aryepiglottic_fold * ncithesaurus:Aryteno-epiglottic_Fold @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014385 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0014485.md b/md/UBERON/85/UBERON_0014485.md index 30b401d7c1..59cac78f07 100644 --- a/md/UBERON/85/UBERON_0014485.md +++ b/md/UBERON/85/UBERON_0014485.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014485 * *Label* = distal phalanx of digit 3 - * *Definition* = A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coffin_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Equine_forelimb_anatomy#Distal_phalanx] + * *Definition* = A distal phalanx that is part of a digit 3. In odd-toes ungulates (Perissodactyla e.g. horses) this is called the coffin bone. In even-toed ungulates (Artiodactyla e.g cattle) this is associated with the medial claw. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coffin_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Equine_forelimb_anatomy#Distal_phalanx ] ## Synonyms @@ -12,15 +12,15 @@ * distal phalanx of 3rd digit * distal phalanx of middle digit * distal phalanx of third digit - * equine 3rd phalanx of digit 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * equine distal phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9788[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * equine 3rd phalanx of digit 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * equine distal phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9788, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * third digit distal phalanx * third distal phalanx - * coffin bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] - * medial claw of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * medial claw of ruminant hoof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * medial ungual phalanx of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * pedal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9787] + * coffin bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] + * medial claw of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * medial claw of ruminant hoof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * medial ungual phalanx of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * pedal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9787 ] * digit III P3 ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) ## Other Logical Axioms @@ -48,8 +48,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint[Wikipedia:Coffin_bone] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014485 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0014685.md b/md/UBERON/85/UBERON_0014685.md index b0fad292c1..e27aef6f93 100644 --- a/md/UBERON/85/UBERON_0014685.md +++ b/md/UBERON/85/UBERON_0014685.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014685 * *Label* = pterygoid plexus - * *Definition* = The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_plexus] + * *Definition* = The pterygoid plexus is a venous plexus of considerable size, and is situated between the temporalis muscle and lateral pterygoid muscle, and partly between the two pterygoid muscles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_plexus ] ## Synonyms - * plexus venosus pterygoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoid venous plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50944] - * pterygoid venous plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_plexus] - * middle meningeal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_plexus] - * plexus pterygoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pterygoid plexus vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pterygoid_plexus] + * plexus venosus pterygoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoid venous plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50944 ] + * pterygoid venous plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_plexus ] + * middle meningeal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_plexus ] + * plexus pterygoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pterygoid plexus vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pterygoid_plexus ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014685 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0014785.md b/md/UBERON/85/UBERON_0014785.md index 31be6d091c..b57f2d9c3d 100644 --- a/md/UBERON/85/UBERON_0014785.md +++ b/md/UBERON/85/UBERON_0014785.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014785 * *Label* = levator cloacae - * *Definition* = a long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] + * *Definition* = a long narrow muscle arising from the underside of feather bulge of the lateral rectrices, inserting near the midline of the cloacal tubercle - phallus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] ## Synonyms - * m. retractor phalli caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] - * musculus levator cloacae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] - * musculus retractor phalli caudalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1242/dev.01545] + * m. retractor phalli caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] + * musculus levator cloacae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] + * musculus retractor phalli caudalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1242/dev.01545 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014785 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0014885.md b/md/UBERON/85/UBERON_0014885.md index dbe79d5fb7..d3f3d48412 100644 --- a/md/UBERON/85/UBERON_0014885.md +++ b/md/UBERON/85/UBERON_0014885.md @@ -6,12 +6,12 @@ ## Synonyms - * distal end of distal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] - * distal end of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] - * distal epiphysis of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] - * head of distal phalanx of fifth digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] - * head of distal phalanx of fifth finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] - * head of distal phalanx of little finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37657] + * distal end of distal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] + * distal end of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] + * distal epiphysis of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] + * head of distal phalanx of fifth digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] + * head of distal phalanx of fifth finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] + * head of distal phalanx of little finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37657 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manual digit 5](../../UBERON/14/UBERON_0004314.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014885 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_0015085.md b/md/UBERON/85/UBERON_0015085.md index a6b770b2ec..4c942e3113 100644 --- a/md/UBERON/85/UBERON_0015085.md +++ b/md/UBERON/85/UBERON_0015085.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal bone 1 endochondral element](../../UBERON/84/UBERON_0015084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015085 + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000185.md b/md/UBERON/85/UBERON_2000185.md index d3963ea8c2..effc8901ff 100644 --- a/md/UBERON/85/UBERON_2000185.md +++ b/md/UBERON/85/UBERON_2000185.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000185 * *Label* = commissura rostral, pars ventralis - * *Definition* = Part of the anterior commissure which abuts the preoptic region dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209] + * *Definition* = Part of the anterior commissure which abuts the preoptic region dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000285.md b/md/UBERON/85/UBERON_2000285.md index f505535bd1..1dbc7b5a76 100644 --- a/md/UBERON/85/UBERON_2000285.md +++ b/md/UBERON/85/UBERON_2000285.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000485.md b/md/UBERON/85/UBERON_2000485.md index 568b3e8976..deceb7fbe5 100644 --- a/md/UBERON/85/UBERON_2000485.md +++ b/md/UBERON/85/UBERON_2000485.md @@ -6,7 +6,7 @@ ## Synonyms - * central nucleus inferior lobes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000485[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * central nucleus inferior lobes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000485, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000585.md b/md/UBERON/85/UBERON_2000585.md index 3022f7c0ed..dd053133ac 100644 --- a/md/UBERON/85/UBERON_2000585.md +++ b/md/UBERON/85/UBERON_2000585.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000585 * *Label* = kinethmoid cartilage - * *Definition* = Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * kinethmoideum cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000585] + * kinethmoideum cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000585 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000685.md b/md/UBERON/85/UBERON_2000685.md index e02862c0ac..5c4785f42c 100644 --- a/md/UBERON/85/UBERON_2000685.md +++ b/md/UBERON/85/UBERON_2000685.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2000885.md b/md/UBERON/85/UBERON_2000885.md index 41c715e8e1..5967611273 100644 --- a/md/UBERON/85/UBERON_2000885.md +++ b/md/UBERON/85/UBERON_2000885.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000885[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000885, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_2000985.md b/md/UBERON/85/UBERON_2000985.md index 46265fb239..71b2ac5fc5 100644 --- a/md/UBERON/85/UBERON_2000985.md +++ b/md/UBERON/85/UBERON_2000985.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2001285.md b/md/UBERON/85/UBERON_2001285.md index ec211421c3..5aaed1ce26 100644 --- a/md/UBERON/85/UBERON_2001285.md +++ b/md/UBERON/85/UBERON_2001285.md @@ -6,9 +6,9 @@ ## Synonyms - * Se [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001285] - * intersegmental vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001285[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * intersomitic vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001285] + * Se [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001285 ] + * intersegmental vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001285, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * intersomitic vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001285 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_2001585.md b/md/UBERON/85/UBERON_2001585.md index da57a68322..528c8a17f0 100644 --- a/md/UBERON/85/UBERON_2001585.md +++ b/md/UBERON/85/UBERON_2001585.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001585 * *Label* = caudal principal ray - * *Definition* = Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Counts of caudal principal rays are taken as the number of branched rays plus two adjacent unbranched rays and counts are typically reported as, for example: 1,8,7,1 (1 unbranched and 8 branched upper rays, 7 branched and 1 unbranched lower rays). A caudal principal caudal ray may be associated with one or more hypurals or with hemal spines of preural centra 1 and 2 (Schultze and Arratia, 1989; Arratia, 2008). In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). ## Synonyms - * caudal fin principal ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001585] - * caudal principal lepidotrichium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001585] + * caudal fin principal ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001585 ] + * caudal principal lepidotrichium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001585 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2001685.md b/md/UBERON/85/UBERON_2001685.md index 12a44e0439..fec17cc2b1 100644 --- a/md/UBERON/85/UBERON_2001685.md +++ b/md/UBERON/85/UBERON_2001685.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001685 * *Label* = lateral ethmoid-ectopterygoid ligament - * *Definition* = Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2001785.md b/md/UBERON/85/UBERON_2001785.md index 59f76fc1e2..2b01d0660b 100644 --- a/md/UBERON/85/UBERON_2001785.md +++ b/md/UBERON/85/UBERON_2001785.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2001885.md b/md/UBERON/85/UBERON_2001885.md index 8ad202ed85..e38c0d2b1a 100644 --- a/md/UBERON/85/UBERON_2001885.md +++ b/md/UBERON/85/UBERON_2001885.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001885 * *Label* = neural spine 1 - * *Definition* = Neural spine that is associated with the first vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural spine that is associated with the first vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2001985.md b/md/UBERON/85/UBERON_2001985.md index 455767daa7..cf6b38b273 100644 --- a/md/UBERON/85/UBERON_2001985.md +++ b/md/UBERON/85/UBERON_2001985.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001985 * *Label* = centrum 3 - * *Definition* = Centrum that is part of vertebra 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2002085.md b/md/UBERON/85/UBERON_2002085.md index 47ea96d0f8..d9e952d182 100644 --- a/md/UBERON/85/UBERON_2002085.md +++ b/md/UBERON/85/UBERON_2002085.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002085 * *Label* = ural centrum - * *Definition* = A vertebral centrum that is posterior to preural vertebra 1 and consequently the most posterior vertebral centra. Ural centrum is a unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = A vertebral centrum that is posterior to preural vertebra 1 and consequently the most posterior vertebral centra. Ural centrum is a unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = A ural centrum may be formed by a chordacentrum alone, or chordacentrum plus autocentrum or autocentrum alone depending on the teleost subgroup. An ural centrum may articulate or fuse with its neural arch dorsally or the neural arch my be absent and with a hypural ventrally. The term ural centrum was proposed by Nybelin (1963). For the composition and formation of caudal vertebrae and centra see Arratia (1991), Arratia and Schultze (1992) and Arratia et al. (2001). ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2002185.md b/md/UBERON/85/UBERON_2002185.md index 1353f656a8..47dde82230 100644 --- a/md/UBERON/85/UBERON_2002185.md +++ b/md/UBERON/85/UBERON_2002185.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002185 * *Label* = climbing fiber - * *Definition* = Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-090422-9] + * *Definition* = Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-090422-9 ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2002285.md b/md/UBERON/85/UBERON_2002285.md index 8947cc5feb..12e58d7839 100644 --- a/md/UBERON/85/UBERON_2002285.md +++ b/md/UBERON/85/UBERON_2002285.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002285 * *Label* = cycloid scale - * *Definition* = Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Scale that is smooth-edged, round or oval and composed of acellular dermal bone lacking small spines on the posterior exposed edge. (from http://www.briancoad.com/Dictionary/introduction.htm). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Typical of many teleosts. Some cycloid scales may have a serrated margin and are then termed spinoid scales. (from http://www.briancoad.com/Dictionary/introduction.htm). ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2005085.md b/md/UBERON/85/UBERON_2005085.md index 37a38093f5..dd4027b20c 100644 --- a/md/UBERON/85/UBERON_2005085.md +++ b/md/UBERON/85/UBERON_2005085.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005085 * *Label* = nasal artery - * *Definition* = The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * NA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005085] + * NA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005085 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2005185.md b/md/UBERON/85/UBERON_2005185.md index 1f01d42241..a9c0e07620 100644 --- a/md/UBERON/85/UBERON_2005185.md +++ b/md/UBERON/85/UBERON_2005185.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 2 contralateral mlf interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005185] + * middle dorsal 2 contralateral mlf interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005185 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_2005385.md b/md/UBERON/85/UBERON_2005385.md index 62a0e19782..e97200e279 100644 --- a/md/UBERON/85/UBERON_2005385.md +++ b/md/UBERON/85/UBERON_2005385.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005385 * *Label* = dorsal fin proximal radial bone 8 - * *Definition* = dorsal fin proximal radial 8 element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 8 element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -24,14 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [dorsal fin proximal radial element 8](../../UBERON/85/UBERON_2105385.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2105385.md b/md/UBERON/85/UBERON_2105385.md index 7fbaedcdba..9e5e58813a 100644 --- a/md/UBERON/85/UBERON_2105385.md +++ b/md/UBERON/85/UBERON_2105385.md @@ -20,14 +20,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal fin proximal radial element](../../UBERON/47/UBERON_2100947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal fin pterygiophore 8](../../UBERON/71/UBERON_2005371.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_2205385.md b/md/UBERON/85/UBERON_2205385.md index 979ed039da..ff45b82ddc 100644 --- a/md/UBERON/85/UBERON_2205385.md +++ b/md/UBERON/85/UBERON_2205385.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2205385 * *Label* = dorsal fin proximal radial cartilage 8 - * *Definition* = dorsal fin proximal radial 8 element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://github.com/obophenotype/uberon/issues/251] + * *Definition* = dorsal fin proximal radial 8 element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://github.com/obophenotype/uberon/issues/251 ] ## Synonyms @@ -22,14 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [dorsal fin proximal radial element 8](../../UBERON/85/UBERON_2105385.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3000085.md b/md/UBERON/85/UBERON_3000085.md index 51b4a2eae0..fe454545ec 100644 --- a/md/UBERON/85/UBERON_3000085.md +++ b/md/UBERON/85/UBERON_3000085.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000085 * *Label* = cavum inferius - * *Definition* = Accessory cavity located ventral to the cavum principale and cavum medius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Accessory cavity located ventral to the cavum principale and cavum medius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3000185.md b/md/UBERON/85/UBERON_3000185.md index 58fc2cd10a..2b59694129 100644 --- a/md/UBERON/85/UBERON_3000185.md +++ b/md/UBERON/85/UBERON_3000185.md @@ -6,7 +6,7 @@ ## Synonyms - * endolymphatic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000185] + * endolymphatic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000185 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3000685.md b/md/UBERON/85/UBERON_3000685.md index 7620a4c7c6..50f462b724 100644 --- a/md/UBERON/85/UBERON_3000685.md +++ b/md/UBERON/85/UBERON_3000685.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000685 * *Label* = foramen nervi hypoglossi - * *Definition* = Foramen that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Rocek_2003] + * *Definition* = Foramen that houses the hypoglossus nerve and is located between the anterolateral process and the proximal part of the hyale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Rocek_2003 ] ## Synonyms - * foramen laterale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000685] + * foramen laterale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000685 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3000785.md b/md/UBERON/85/UBERON_3000785.md index 6957fb7893..afcaf0f9ab 100644 --- a/md/UBERON/85/UBERON_3000785.md +++ b/md/UBERON/85/UBERON_3000785.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000785 * *Label* = trochlear groove of humerus - * *Definition* = Furrow between the humeral head and the ulnar condyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Furrow between the humeral head and the ulnar condyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3000885.md b/md/UBERON/85/UBERON_3000885.md index 081bd6a031..439a311498 100644 --- a/md/UBERON/85/UBERON_3000885.md +++ b/md/UBERON/85/UBERON_3000885.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000885 * *Label* = obsolete Nobelian bone - * *Definition* = Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3010240 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_3010085.md b/md/UBERON/85/UBERON_3010085.md index 762e73f7c4..6cfdecd9c6 100644 --- a/md/UBERON/85/UBERON_3010085.md +++ b/md/UBERON/85/UBERON_3010085.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3010285.md b/md/UBERON/85/UBERON_3010285.md index 846ae35acf..41f4eb6411 100644 --- a/md/UBERON/85/UBERON_3010285.md +++ b/md/UBERON/85/UBERON_3010285.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010285 * *Label* = obsolete bottle cell - * *Definition* = Cell type that is first to migrate inwards at the blastopore during gastrulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Cell type that is first to migrate inwards at the blastopore during gastrulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] * *Comment* = replace with CL:0000020 once cl is released. ## Synonyms @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_3010585.md b/md/UBERON/85/UBERON_3010585.md index 0019a95034..286d09e5eb 100644 --- a/md/UBERON/85/UBERON_3010585.md +++ b/md/UBERON/85/UBERON_3010585.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010585 * *Label* = basibranchial II - * *Definition* = Unpaired medial element that articulates with the anterior basibrachial I (if present). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Unpaired medial element that articulates with the anterior basibrachial I (if present). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms - * Copula II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010585] - * urohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010585] + * Copula II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010585 ] + * urohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010585 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3010685.md b/md/UBERON/85/UBERON_3010685.md index 8a75252ecb..b57170f36d 100644 --- a/md/UBERON/85/UBERON_3010685.md +++ b/md/UBERON/85/UBERON_3010685.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_3010785.md b/md/UBERON/85/UBERON_3010785.md index c84e5ebfa2..59240a0b46 100644 --- a/md/UBERON/85/UBERON_3010785.md +++ b/md/UBERON/85/UBERON_3010785.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/85/UBERON_4200085.md b/md/UBERON/85/UBERON_4200085.md index fc6e5fffb7..25218d03f7 100644 --- a/md/UBERON/85/UBERON_4200085.md +++ b/md/UBERON/85/UBERON_4200085.md @@ -29,8 +29,10 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/85/UBERON_4200185.md b/md/UBERON/85/UBERON_4200185.md index 23af42f318..1eef1ff879 100644 --- a/md/UBERON/85/UBERON_4200185.md +++ b/md/UBERON/85/UBERON_4200185.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0000086.md b/md/UBERON/86/UBERON_0000086.md index fdc0430fc3..6fee8f3692 100644 --- a/md/UBERON/86/UBERON_0000086.md +++ b/md/UBERON/86/UBERON_0000086.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000086 * *Label* = zona pellucida - * *Definition* = A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zona_pellucida] + * *Definition* = A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zona_pellucida ] ## Synonyms - * zona pellucida - vitelline membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000720] - * oolemma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003135] - * pellucid zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003135] - * striated membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003135] + * zona pellucida - vitelline membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000720 ] + * oolemma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003135 ] + * pellucid zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003135 ] + * striated membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003135 ] * vitelline envelope * vitelline membrane - * zona radiata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003135] - * zona striata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003135] + * zona radiata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003135 ] + * zona striata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003135 ] ## Cross-references @@ -29,7 +29,7 @@ * MA:0001715 * MESH:A05.360.490.690.950 * TAO:0001111 - * UMLS:C0043519 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zona_Pellucida] + * UMLS:C0043519 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zona_Pellucida ] * VHOG:0000720 * Wikipedia:Zona_pellucida * ZFA:0001111 @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Outside the plasma membrane, three envelopes surround the ovum. The first, the primary egg envelope, lies between the plasma membrane and the surrounding cells of the ovary. The most consistent component of this primary layer is the vitelline membrane, a transparent jacket of fibrous protein. In mammals, the homologous structure is called the zona pellucida.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0000486.md b/md/UBERON/86/UBERON_0000486.md index 93c11fdd79..882d94514c 100644 --- a/md/UBERON/86/UBERON_0000486.md +++ b/md/UBERON/86/UBERON_0000486.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000486 * *Label* = multilaminar epithelium - * *Definition* = Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stratified_epithelium] + * *Definition* = Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stratified_epithelium ] ## Synonyms * stratified epithelium - * laminated epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002074] + * laminated epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002074 ] ## Cross-references @@ -22,7 +22,7 @@ * HAO:0000069 * SCTID:309044005 * TAO:0001494 - * UMLS:C0682575 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratified_Epithelium] + * UMLS:C0682575 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratified_Epithelium ] * Wikipedia:Stratified_epithelium * XAO:0004006 * ZFA:0001494 @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of more than one layer of epithelial cells.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of more than one layer of epithelial cells.[CARO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of more than one layer of epithelial cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001086.md b/md/UBERON/86/UBERON_0001086.md index d1f33114ac..ad804f3ab0 100644 --- a/md/UBERON/86/UBERON_0001086.md +++ b/md/UBERON/86/UBERON_0001086.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0010996 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011002 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001086 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0001186.md b/md/UBERON/86/UBERON_0001186.md index 841f1cb6c6..c135196fa1 100644 --- a/md/UBERON/86/UBERON_0001186.md +++ b/md/UBERON/86/UBERON_0001186.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001186 * *Label* = left renal artery - * *Definition* = Renal artery that supplies the left kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Renal artery that supplies the left kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP] ## Synonyms @@ -17,7 +17,7 @@ * OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw * OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA * SCTID:19215005 - * UMLS:C0226333 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Renal_Artery] + * UMLS:C0226333 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Renal_Artery ] * ncithesaurus:Left_Renal_Artery ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [renal artery](../../UBERON/84/UBERON_0001184.md) and [supplies](../../FMA/03/FMA_86003.md) some [left kidney](../../UBERON/38/UBERON_0004538.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001286.md b/md/UBERON/86/UBERON_0001286.md index bce8264faa..c266755d45 100644 --- a/md/UBERON/86/UBERON_0001286.md +++ b/md/UBERON/86/UBERON_0001286.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001286 * *Label* = Bowman's space - * *Definition* = a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011499[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bowman's_space[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/bowman's+space] + * *Definition* = a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011499, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bowman's_space, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/bowman's+space ] * *Comment* = TODO - fix ZFA ## Synonyms * bowman's space - * capsular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/bowman's+space] - * glomerular capsule space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011499] - * glomerular urinary space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011499] - * inter-glomerular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005283] - * inter-glomerular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005312] - * pronephric capsular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005312] - * renal capsular space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005283] + * capsular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/bowman's+space ] + * glomerular capsule space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011499 ] + * glomerular urinary space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011499 ] + * inter-glomerular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005283 ] + * inter-glomerular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005312 ] + * pronephric capsular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005312 ] + * renal capsular space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005283 ] * urinary space - * urinary space of renal corpuscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28263] - * bowmanb%s space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005312] + * urinary space of renal corpuscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28263 ] + * bowmanb%s space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005312 ] ## Cross-references @@ -29,7 +29,7 @@ * SCTID:244284006 * TAO:0005283 * TAO:0005312 - * UMLS:C0227643 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urinary_Space] + * UMLS:C0227643 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urinary_Space ] * Wikipedia:Bowman's_space * ZFA:0005283 * ZFA:0005312 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001386.md b/md/UBERON/86/UBERON_0001386.md index fb00875da7..76f6bb8ab3 100644 --- a/md/UBERON/86/UBERON_0001386.md +++ b/md/UBERON/86/UBERON_0001386.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001386 * *Label* = extensor digitorum longus - * *Definition* = The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_longus_muscle] + * *Definition* = The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_longus_muscle ] ## Synonyms - * extensor digitorum longus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000436] - * toe extensor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0011916] + * extensor digitorum longus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000436 ] + * toe extensor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0011916 ] * toe extensor muscle - * musculus extensor digitorum longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extensor_digitorum_longus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus extensor digitorum longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extensor_digitorum_longus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BTO:0000436 * FMA:22534 * MA:0002295 - * UMLS:C0224464 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extensor_Digitorum_Longus] + * UMLS:C0224464 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extensor_Digitorum_Longus ] * Wikipedia:Extensor_digitorum_longus_muscle * http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001486.md b/md/UBERON/86/UBERON_0001486.md index 237bdb6bfb..0dd5c1edcd 100644 --- a/md/UBERON/86/UBERON_0001486.md +++ b/md/UBERON/86/UBERON_0001486.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001486 * *Label* = hip joint - * *Definition* = The hip joint is a synovial joint formed by the articulation of the rounded head of the femur and the cup-like acetabulum of the pelvis. It forms the primary connection between the bones of the lower limb and the axial skeleton of the trunk and pelvis. Both joint surfaces are covered with a strong but lubricated layer called articular hyaline cartilage. The cuplike acetabulum forms at the union of three pelvic bones the ilium, pubis, and ischium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip#Articulation] + * *Definition* = The hip joint is a synovial joint formed by the articulation of the rounded head of the femur and the cup-like acetabulum of the pelvis. It forms the primary connection between the bones of the lower limb and the axial skeleton of the trunk and pelvis. Both joint surfaces are covered with a strong but lubricated layer called articular hyaline cartilage. The cuplike acetabulum forms at the union of three pelvic bones the ilium, pubis, and ischium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip#Articulation ] * *Comment* = Alternate def - "The articulation between the femur and the innominate bone." [BTO:0001502] ## Synonyms - * articulatio coxofemoralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35178] + * articulatio coxofemoralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35178 ] * femoro-iliac joint - * coxal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hip] + * coxal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hip ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.583.411 * OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA * SCTID:182201002 - * UMLS:C0019558 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hip_Joint] + * UMLS:C0019558 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hip_Joint ] * VHOG:0001001 * Wikipedia:Hip#Articulation * galen:HipJoint @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [acetabular part of hip bone](../../UBERON/69/UBERON_0001269.md) and [connects](../../ts/core#connects.md) some [femur](../../UBERON/81/UBERON_0000981.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001586.md b/md/UBERON/86/UBERON_0001586.md index 73f726c68b..b189e711fa 100644 --- a/md/UBERON/86/UBERON_0001586.md +++ b/md/UBERON/86/UBERON_0001586.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001586 * *Label* = internal jugular vein - * *Definition* = The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_jugular_vein] + * *Definition* = The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_jugular_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * internal jugular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000877] + * internal jugular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000877 ] * internal jugular venous tree - * vena jugularis interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_jugular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena jugularis interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_jugular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA * RETIRED_EHDAA2:0000878 * SCTID:181372005 - * UMLS:C0226550 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Jugular_Vein] + * UMLS:C0226550 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Jugular_Vein ] * Wikipedia:Internal_jugular_vein * XAO:0000382 * galen:InternalJugularVein @@ -48,8 +48,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which receives many veins draining the palate, brain, and the orbital, nasal, and auditory regions.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001686.md b/md/UBERON/86/UBERON_0001686.md index c1dbbc1b28..e46e9740de 100644 --- a/md/UBERON/86/UBERON_0001686.md +++ b/md/UBERON/86/UBERON_0001686.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001686 * *Label* = auditory ossicle - * *Definition* = One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_ossicle] + * *Definition* = One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_ossicle ] * *Comment* = Taxon and editor notes: This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5. Development notes: Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry.[WP] ## Synonyms * auditory bone - * middle ear ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005105] - * ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17824[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_ossicle] - * auditory ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000254] - * ear bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000254] + * middle ear ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005105 ] + * ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17824, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_ossicle ] + * auditory ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000254 ] + * ear bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000254 ] * ear ossicle - * ear ossicles [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ear ossicles [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * middle ear bone * ossicle of ear * ossicle of inner ear - * ossicular chain [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ossicular chain [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,7 +30,7 @@ * FMA:52750 * MA:0000254 * SCTID:181184001 - * UMLS:C0013450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auditory_Ossicle] + * UMLS:C0013450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auditory_Ossicle ] * VHOG:0000461 * Wikipedia:Auditory_ossicle * XAO:0000214 @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001786.md b/md/UBERON/86/UBERON_0001786.md index baf2ff78f6..466a311a4d 100644 --- a/md/UBERON/86/UBERON_0001786.md +++ b/md/UBERON/86/UBERON_0001786.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001786 * *Label* = fovea centralis - * *Definition* = a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1? mm from the central fovea, and the perifovea is found 2? mm away from the fovea centralis[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_centralis_in_macula] + * *Definition* = a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1? mm from the central fovea, and the perifovea is found 2? mm away from the fovea centralis[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_centralis_in_macula ] * *Comment* = As an anatomical term, there are several foveae around the body, including in the head of the femur.(WP) ## Synonyms - * centre of macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2543] + * centre of macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2543 ] * fovea - * fovea centralis in macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fovea_centralis_in_macula] - * centre of fovea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2543] + * fovea centralis in macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fovea_centralis_in_macula ] + * centre of fovea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2543 ] ## Cross-references @@ -23,9 +23,9 @@ * MESH:A09.371.729.522.436 * NIF_GrossAnatomy:birnlex_2543 * SCTID:264479005 - * UMLS:C0016622 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2543] - * UMLS:C0016622 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fovea_Centralis] - * UMLS:C0450290 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2543] + * UMLS:C0016622 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2543 ] + * UMLS:C0016622 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fovea_Centralis ] + * UMLS:C0450290 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2543 ] * VHOG:0001572 * Wikipedia:Fovea_centralis_in_macula * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small pit in the center of the macula lutea, the area of clearest vision, where the retinal layers are spread aside, and light falls directly on the cones. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Definition of fovea centralis should be considered here as 'an area centralis at the visual axis' (reference 1). There is an uncertaincy of the relation, because: 1.-The fovea first appeared in evolution in the temporal retina of fishes. Then, in birds, the nasal fovea and bifoveal system with nasal and temporal foveas developed. The fovea disappeared in primitive mammals, and reappeared in primates. A residue of the fovea is conserved in the visual streak, and the disappearance and reappearance of the fovea, in primitive mammals and primates respectively, correlates with degeneration and restoration of cone pigment genes in photoreceptors (reference 2). 2.-Many retinal features (foveas, trichromacy, midget pathways and associated cell types) appear specific to primates. This has led to investigations in parallel with other mammalian models such as cat or rabbit. Correlation of the results often proves to be difficult, since an evolutionary scenario with transitions between the mammalian models is largely lacking (reference 3).[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001886.md b/md/UBERON/86/UBERON_0001886.md index 510897e9fd..0cf2173541 100644 --- a/md/UBERON/86/UBERON_0001886.md +++ b/md/UBERON/86/UBERON_0001886.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001886 * *Label* = choroid plexus - * *Definition* = A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid_plexus] + * *Definition* = A network formed by blood vessels and the tela choroidea which secretes CSF into the ventricular spaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid_plexus ] * *Comment* = TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerebral hemisphere ## Synonyms - * chorioid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61934] - * plexus choroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61934[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * CP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * choroid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61934] - * plexus choroideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Choroid_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chorioid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61934 ] + * plexus choroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61934, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * CP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * choroid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61934 ] + * plexus choroideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Choroid_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * ventricular choroid plexus ## Cross-references @@ -33,7 +33,7 @@ * NeuroNames:1377 * SCTID:264450003 * TAO:0001443 - * UMLS:C0008524 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus] + * UMLS:C0008524 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus ] * VHOG:0001377 * Wikipedia:Choroid_plexus * ZFA:0001443 @@ -67,8 +67,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fringe of the tela choroidea of the brain ventricles[MP] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = choroidal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0001986.md b/md/UBERON/86/UBERON_0001986.md index b01e397022..f16b595620 100644 --- a/md/UBERON/86/UBERON_0001986.md +++ b/md/UBERON/86/UBERON_0001986.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001986 * *Label* = endothelium - * *Definition* = A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63916[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A10.272.491] + * *Definition* = A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63916, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A10.272.491 ] * *Comment* = The term 'endothelium' has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980) ## Synonyms @@ -20,7 +20,7 @@ * GAID:520 * MESH:A10.272.491 * SCTID:27168002 - * UMLS:C0014257 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endothelium] + * UMLS:C0014257 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endothelium ] * galen:Endothelium * ncithesaurus:Endothelium @@ -46,8 +46,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endothelial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002086.md b/md/UBERON/86/UBERON_0002086.md index db5448a5df..f1c23c6656 100644 --- a/md/UBERON/86/UBERON_0002086.md +++ b/md/UBERON/86/UBERON_0002086.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002086 * *Label* = sinoatrial valve - * *Definition* = A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/sinoatrial+valve] + * *Definition* = A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/sinoatrial+valve ] * *Comment* = Usage notes: in humans and mouse this is the opening from SV into right atrium. This class represents the valve connecting the SV to any atrium and is applicable to animals with a single atrium ## Synonyms - * sinuatrial valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011646] + * sinuatrial valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011646 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002186.md b/md/UBERON/86/UBERON_0002186.md index d219de50b3..cdd79908d3 100644 --- a/md/UBERON/86/UBERON_0002186.md +++ b/md/UBERON/86/UBERON_0002186.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002186 * *Label* = bronchiole - * *Definition* = the first airway branch that no longer contains cartilage; it is a branch of the bronchus[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchiole] + * *Definition* = the first airway branch that no longer contains cartilage; it is a branch of the bronchus[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchiole ] * *Comment* = Structure notes: lacks submucosa and cartilage plates; they have 3 layers: mucosa, muscular layer and outer layer[ISBN10:0123813611] ## Synonyms - * lobular bronchiole [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7410] - * bronchioli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * bronchiolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002375] + * lobular bronchiole [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7410 ] + * bronchioli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * bronchiolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002375 ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0000422 * OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA * SCTID:278982001 - * UMLS:C0006270 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchiole] + * UMLS:C0006270 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchiole ] * VHOG:0000675 * Wikipedia:Bronchiole * http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png @@ -54,8 +54,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = bronchiolar * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002286.md b/md/UBERON/86/UBERON_0002286.md index efb4064ce1..4a5e984d91 100644 --- a/md/UBERON/86/UBERON_0002286.md +++ b/md/UBERON/86/UBERON_0002286.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002286 * *Label* = third ventricle - * *Definition* = Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_714] + * *Definition* = Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct. (Maryann Martone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_714 ] * *Comment* = Editor's note: consider adding class for secondary vesicle precursor ## Synonyms * 3rd ventricle - * ventriculus diencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000161] + * ventriculus diencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000161 ] * diencephalic vesicle * diencephalic ventricle - * ventriculus tertius cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Third_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * visual area V3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:V3] + * ventriculus tertius cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Third_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * visual area V3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:V3 ] ## Cross-references @@ -33,8 +33,8 @@ * OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA * SCTID:180931007 * TAO:0000161 - * UMLS:C0149555 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_714] - * UMLS:C0149555 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Third_Ventricle_of_Brain] + * UMLS:C0149555 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_714 ] + * UMLS:C0149555 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Third_Ventricle_of_Brain ] * VHOG:0000007 * Wikipedia:Third_ventricle * ZFA:0000161 @@ -65,8 +65,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from forebrain ventricle (TAO:0001259)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002386.md b/md/UBERON/86/UBERON_0002386.md index ac180845d4..5b32b86598 100644 --- a/md/UBERON/86/UBERON_0002386.md +++ b/md/UBERON/86/UBERON_0002386.md @@ -3,39 +3,39 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002386 * *Label* = forelimb zeugopod - * *Definition* = The middle limb segment of the pectoral free limb, between the autopod and stylopod segments. Includes as parts the forelimb zeugopodial skeleton, which includes as parts the radius and ulna, or their cartilage precursors, or evolutionary variants. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:curators] + * *Definition* = The middle limb segment of the pectoral free limb, between the autopod and stylopod segments. Includes as parts the forelimb zeugopodial skeleton, which includes as parts the radius and ulna, or their cartilage precursors, or evolutionary variants. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:curators ] * *Comment* = Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here ## Synonyms * antebrachial region - * antebrachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005058] - * antebrachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forearm] + * antebrachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005058 ] + * antebrachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forearm ] * antibrachium - * arm middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * forearm * forelimb epipodium * forelimb zeugopodium * forelimb zygopod * intermediate segment of free upper limb - * lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000034[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000034, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] * lower segment of arm - * middle limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * middle limb segment of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * middle limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb middle limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * regio antebrachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9663[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * middle limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * middle limb segment of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * middle limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb middle limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * regio antebrachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9663, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * zeugopod of arm - * zeugopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * zeugopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * zeugopod of forelimb - * zeugopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing zeugopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * antebrachium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forearm[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * zeugopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing zeugopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * antebrachium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forearm, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * fore epipodium ## Cross-references @@ -53,7 +53,7 @@ * MESH:A01.378.800.585 * OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA * SCTID:362741001 - * UMLS:C0016536 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Forearm] + * UMLS:C0016536 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Forearm ] * VHOG:0000341 * VSAO:0005058 * Wikipedia:Forearm @@ -76,7 +76,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [zeugopod](../../UBERON/71/UBERON_0002471.md) ## Other Logical Axioms @@ -86,8 +86,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The middle forelimb region. [Evolution, Fourth_Edition_(2006)_Boston_etc.:_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.321, see_Kardong_KV][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002486.md b/md/UBERON/86/UBERON_0002486.md index b5ea5132f5..99f3aee9fd 100644 --- a/md/UBERON/86/UBERON_0002486.md +++ b/md/UBERON/86/UBERON_0002486.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002486 * *Label* = glottis - * *Definition* = The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glottis] + * *Definition* = The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glottis ] ## Synonyms @@ -17,7 +17,7 @@ * MA:0002788 * MESH:A04.329.364 * SCTID:264482000 - * UMLS:C0017681 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glottis] + * UMLS:C0017681 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glottis ] * Wikipedia:Glottis * http://upload.wikimedia.org/wikipedia/commons/3/32/Arytenoid_cartilage.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Arytenoid_cartilage.png/200px-Arytenoid_cartilage.png @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A small, slit-like aperture lying longitudinally on the floor of the pharynx.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002586.md b/md/UBERON/86/UBERON_0002586.md index 2214e5f2ba..e646343e8f 100644 --- a/md/UBERON/86/UBERON_0002586.md +++ b/md/UBERON/86/UBERON_0002586.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002586 * *Label* = calcarine sulcus - * *Definition* = The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Calcarine_sulcus] + * *Definition* = The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Calcarine_sulcus ] ## Synonyms - * calcarine fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83749] - * sulcus calcarinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1086] - * ccs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1086[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Splenium of corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ccs] - * fissura calcarina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:44[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * splenium of corpus callosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ccs] + * calcarine fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83749 ] + * sulcus calcarinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1086 ] + * ccs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1086, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Splenium of corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ccs ] + * fissura calcarina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:44, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * splenium of corpus callosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ccs ] ## Cross-references @@ -20,10 +20,10 @@ * BM:Tel-Cx-CAS * FMA:83749 * NIF_GrossAnatomy:birnlex_1086 - * NeuroNames:44 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1086] + * NeuroNames:44 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1086 ] * SCTID:279355005 - * UMLS:C0228224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1086] - * UMLS:C0228224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Calcarine_Sulcus] + * UMLS:C0228224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1086 ] + * UMLS:C0228224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Calcarine_Sulcus ] * Wikipedia:Calcarine_sulcus * ncithesaurus:Calcarine_Sulcus @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002686.md b/md/UBERON/86/UBERON_0002686.md index 7057c6a949..ddf04441e1 100644 --- a/md/UBERON/86/UBERON_0002686.md +++ b/md/UBERON/86/UBERON_0002686.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002686 * *Label* = angular gyrus - * *Definition* = The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Angular_gyrus] + * *Definition* = The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Angular_gyrus ] ## Synonyms - * middle part of inferior parietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61898] - * preoccipital gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61898] - * gyrus angularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Angular_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus parietalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:109[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prelunate gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:109] + * middle part of inferior parietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61898 ] + * preoccipital gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61898 ] + * gyrus angularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Angular_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus parietalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:109, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prelunate gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:109 ] ## Cross-references * BAMS:AnG * FMA:61898 * NIF_GrossAnatomy:birnlex_1376 - * NeuroNames:109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1376] + * NeuroNames:109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1376 ] * SCTID:279186009 - * UMLS:C0152305 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1376] - * UMLS:C0152305 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Angular_Gyrus] + * UMLS:C0152305 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1376 ] + * UMLS:C0152305 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Angular_Gyrus ] * Wikipedia:Angular_gyrus * http://upload.wikimedia.org/wikipedia/commons/8/86/Surfacegyri.JPG * ncithesaurus:Angular_Gyrus @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002786.md b/md/UBERON/86/UBERON_0002786.md index b39d396317..b5967640fb 100644 --- a/md/UBERON/86/UBERON_0002786.md +++ b/md/UBERON/86/UBERON_0002786.md @@ -6,13 +6,13 @@ ## Synonyms - * abducens nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72491] - * abducens nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72491] - * central part of abducens nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72491] - * root of abducens nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72491] - * abducens nerve root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1277] - * abducens nerve/root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:6n] - * fibrae nervi abducentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:598[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * abducens nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72491 ] + * abducens nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72491 ] + * central part of abducens nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72491 ] + * root of abducens nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72491 ] + * abducens nerve root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1277 ] + * abducens nerve/root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:6n ] + * fibrae nervi abducentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:598, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,8 +21,8 @@ * FMA:72491 * NIF_GrossAnatomy:birnlex_1277 * NIF_GrossAnatomy:birnlex_1689 - * NeuroNames:598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1689] - * UMLS:C0175450 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1689] + * NeuroNames:598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1689 ] + * UMLS:C0175450 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1689 ] ## Subsets @@ -31,7 +31,7 @@ * [root of cranial nerve](../../UBERON/43/UBERON_0006843.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [medulla oblongata](../../UBERON/96/UBERON_0001896.md) ## Equivalencies @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002886.md b/md/UBERON/86/UBERON_0002886.md index dc4ab1aa14..128b439cee 100644 --- a/md/UBERON/86/UBERON_0002886.md +++ b/md/UBERON/86/UBERON_0002886.md @@ -6,15 +6,15 @@ ## Synonyms - * lateral nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61866] - * lateral principal nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61866] - * lateral amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:245] - * lateral nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:245] - * lateroanterior hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LA] - * medial principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2687] - * nucleus amygdalae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002704] - * nucleus amygdaloideus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:245[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus lateralis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:245[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61866 ] + * lateral principal nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61866 ] + * lateral amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:245 ] + * lateral nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:245 ] + * lateroanterior hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LA ] + * medial principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2687 ] + * nucleus amygdalae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002704 ] + * nucleus amygdaloideus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:245, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus lateralis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:245, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,8 +27,8 @@ * FMA:61866 * MA:0002926 * NIF_GrossAnatomy:birnlex_2687 - * NeuroNames:245 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2687] - * UMLS:C0175221 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2687] + * NeuroNames:245 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2687 ] + * UMLS:C0175221 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2687 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0002986.md b/md/UBERON/86/UBERON_0002986.md index 07c62e6b1c..b6b2166f9c 100644 --- a/md/UBERON/86/UBERON_0002986.md +++ b/md/UBERON/86/UBERON_0002986.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002986 * *Label* = neurofilament - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurofilament] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurofilament ] ## Synonyms - * neuronal intermediate filament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63859] + * neuronal intermediate filament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63859 ] ## Cross-references @@ -34,9 +34,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = NIF_Subcellular:sao1316272517 * *[consider](../../er/oboInOwl#consider.md)* = UMLS:C0027834 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Neurofilament - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002986 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0003086.md b/md/UBERON/86/UBERON_0003086.md index 0a74d269e2..664dcd6d01 100644 --- a/md/UBERON/86/UBERON_0003086.md +++ b/md/UBERON/86/UBERON_0003086.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003086 * *Label* = caudal artery - * *Definition* = Extension of the dorsal aorta in the tail. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudal_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Extension of the dorsal aorta in the tail. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudal_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The posterior extension of the dorsal aorta to the tail region, which degenerates at metamorphosis.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of axial vasculature (TAO:0001073)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003186.md b/md/UBERON/86/UBERON_0003186.md index 766b61ee8a..fb75995058 100644 --- a/md/UBERON/86/UBERON_0003186.md +++ b/md/UBERON/86/UBERON_0003186.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004641 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000228 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003186 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0003286.md b/md/UBERON/86/UBERON_0003286.md index faea3cc5be..d7c9cc9062 100644 --- a/md/UBERON/86/UBERON_0003286.md +++ b/md/UBERON/86/UBERON_0003286.md @@ -6,7 +6,7 @@ ## Synonyms - * foregut duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foregut duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003386.md b/md/UBERON/86/UBERON_0003386.md index 332302a44c..7221ce820a 100644 --- a/md/UBERON/86/UBERON_0003386.md +++ b/md/UBERON/86/UBERON_0003386.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003386 * *Label* = smooth muscle of eye - * *Definition* = A portion of smooth muscle tissue that is part of a eye [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a eye [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: Not clear if we need this and intra-ocular muscle. See issue #331. Includes ciliary and iris smooth muscle ## Synonyms - * ocular smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001268] + * ocular smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001268 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [camera-type eye](../../UBERON/19/UBERON_0000019.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003486.md b/md/UBERON/86/UBERON_0003486.md index edc2365014..52bf3feeb2 100644 --- a/md/UBERON/86/UBERON_0003486.md +++ b/md/UBERON/86/UBERON_0003486.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0011827 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003486 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0003586.md b/md/UBERON/86/UBERON_0003586.md index ae2af0bfc8..bc4d2fdd23 100644 --- a/md/UBERON/86/UBERON_0003586.md +++ b/md/UBERON/86/UBERON_0003586.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003586 * *Label* = trunk connective tissue - * *Definition* = A portion of connective tissue that is part of a trunk [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a trunk [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003686.md b/md/UBERON/86/UBERON_0003686.md index ceb5974e37..35acb735d8 100644 --- a/md/UBERON/86/UBERON_0003686.md +++ b/md/UBERON/86/UBERON_0003686.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003686 * *Label* = tooth socket - * *Definition* = Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_alveolus] + * *Definition* = Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_alveolus ] ## Synonyms - * dental alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57490] - * alveolus dentali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:217] - * alveolus dentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:217] - * alveolus dentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dental_alveolus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dental alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:217] + * dental alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57490 ] + * alveolus dentali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:217 ] + * alveolus dentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:217 ] + * alveolus dentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dental_alveolus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dental alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:217 ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:217 * MESH:A02.835.232.781.324.502.125.800 * SCTID:288323008 - * UMLS:C0227130 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tooth_Socket] + * UMLS:C0227130 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tooth_Socket ] * Wikipedia:Dental_alveolus * http://upload.wikimedia.org/wikipedia/commons/2/2e/Alveole_zahn.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003886.md b/md/UBERON/86/UBERON_0003886.md index eacfba0ac7..218b2dfb0f 100644 --- a/md/UBERON/86/UBERON_0003886.md +++ b/md/UBERON/86/UBERON_0003886.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003886 * *Label* = body cavity precursor - * *Definition* = An anatomical cavity that has_potential_to_develop_into a coelemic cavity lumen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that has_potential_to_develop_into a coelemic cavity lumen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [coelemic cavity lumen](../../UBERON/23/UBERON_0002323.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0003986.md b/md/UBERON/86/UBERON_0003986.md index 1cc2e64f17..4bca81ed62 100644 --- a/md/UBERON/86/UBERON_0003986.md +++ b/md/UBERON/86/UBERON_0003986.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003986 * *Label* = minor sublingual duct - * *Definition* = Any of the 8-20 small ducts that open into the mouth on the surface of the sublingual fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009529] + * *Definition* = Any of the 8-20 small ducts that open into the mouth on the surface of the sublingual fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009529 ] ## Synonyms - * duct of Rivinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_duct] + * duct of Rivinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_duct ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71643 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004086.md b/md/UBERON/86/UBERON_0004086.md index b3e38bf8c2..05ef47db02 100644 --- a/md/UBERON/86/UBERON_0004086.md +++ b/md/UBERON/86/UBERON_0004086.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004086 * *Label* = brain ventricle - * *Definition* = one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300] + * *Definition* = one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300 ] * *Comment* = Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The latter is a cavity, and part of the former, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies. ## Synonyms - * cerebral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0002118] - * region of ventricular system of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78447] + * cerebral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0002118 ] + * region of ventricular system of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78447 ] ## Cross-references @@ -24,7 +24,7 @@ * NeuroNames:2497 * OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA * SCTID:180929003 - * UMLS:C0007799 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ventricle_Brain] + * UMLS:C0007799 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ventricle_Brain ] * ncithesaurus:Ventricle_Brain ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct[NIF_GrossAnatomy:birnlex_1356]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004186.md b/md/UBERON/86/UBERON_0004186.md index 1e9ec7171b..890499abd9 100644 --- a/md/UBERON/86/UBERON_0004186.md +++ b/md/UBERON/86/UBERON_0004186.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004186 * *Label* = olfactory bulb mitral cell layer - * *Definition* = The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061034] + * *Definition* = The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061034 ] * *Comment* = note that NIF divides this into main and accessory ## Synonyms - * mitral cell body layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100201] - * mitral cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001108] - * mitral cell layer of the olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Mi] - * olfactory bulb main mitral cell body layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100201] + * mitral cell body layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100201 ] + * mitral cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001108 ] + * mitral cell layer of the olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Mi ] + * olfactory bulb main mitral cell body layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100201 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004386.md b/md/UBERON/86/UBERON_0004386.md index 8159c72070..f0e57277d4 100644 --- a/md/UBERON/86/UBERON_0004386.md +++ b/md/UBERON/86/UBERON_0004386.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004386 * *Label* = epiphysis of ulna - * *Definition* = An epiphysis that is part of an ulna [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of an ulna [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ulnar epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33748] + * ulnar epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33748 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ulna](../../UBERON/24/UBERON_0001424.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004486.md b/md/UBERON/86/UBERON_0004486.md index 919ac504f5..73509ea9fb 100644 --- a/md/UBERON/86/UBERON_0004486.md +++ b/md/UBERON/86/UBERON_0004486.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004486 * *Label* = musculature of perineum - * *Definition* = Any collection of muscles that is part of a perineum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a perineum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * musculi perinei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71295[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * perineal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71295] - * perineal muscles set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71295] - * set of perineal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71295] + * musculi perinei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71295, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * perineal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71295 ] + * perineal muscles set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71295 ] + * set of perineal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71295 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [perineum](../../UBERON/56/UBERON_0002356.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004686.md b/md/UBERON/86/UBERON_0004686.md index 3bf3d904e1..8465761b05 100644 --- a/md/UBERON/86/UBERON_0004686.md +++ b/md/UBERON/86/UBERON_0004686.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004686 * *Label* = gastro-splenic ligament - * *Definition* = peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrosplenic_ligament[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html] + * *Definition* = peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrosplenic_ligament, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html ] * *Comment* = in MA, EMAPA and EHDAA2 this is part of the dorsal mesogastrium. In wikipedia, and the above source, it is derived from the DM. This is a generic ligament in MA, we infer this and assert that this is a nonskeletal ligament ## Synonyms - * gastrolienal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16517] - * gastrosplenc ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16517] - * gastrosplenic ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16517] - * ligamentum gastrosplenicum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrosplenic_ligament] + * gastrolienal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16517 ] + * gastrosplenc ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16517 ] + * gastrosplenic ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16517 ] + * ligamentum gastrosplenicum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrosplenic_ligament ] ## Cross-references @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Mesenteric fold extending from the greater curvature of the stomach to the spleen. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004786.md b/md/UBERON/86/UBERON_0004786.md index bb9ab6a6b4..301adf9275 100644 --- a/md/UBERON/86/UBERON_0004786.md +++ b/md/UBERON/86/UBERON_0004786.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004786 * *Label* = gastrointestinal system mucosa - * *Definition* = A mucosa that is part of a gastrointestinal system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a gastrointestinal system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 ## Synonyms - * digestive tract mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * gut mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000546] - * gut mucuous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * mucosa of gut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * digestive tract mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * gut mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000546 ] + * gut mucuous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * mucosa of gut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gastrointestinal system](../../UBERON/09/UBERON_0005409.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004886.md b/md/UBERON/86/UBERON_0004886.md index 900ede33b1..89e6ff14f7 100644 --- a/md/UBERON/86/UBERON_0004886.md +++ b/md/UBERON/86/UBERON_0004886.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004886 * *Label* = lung hilus - * *Definition* = A depression on the surface of the lung where the bronchus, blood vessels and nerves enter. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:lung_mtg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0721662544] + * *Definition* = A depression on the surface of the lung where the bronchus, blood vessels and nerves enter. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:lung_mtg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0721662544 ] ## Synonyms * hilum of lung - * hilum pulmonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7330[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hilus of lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lung hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pulmonary hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7330] - * pulmonary hilus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hilum pulmonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7330, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hilus of lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lung hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pulmonary hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7330 ] + * pulmonary hilus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:7330 * SCTID:264017007 - * UMLS:C0225701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hilar_Area_of_the_Lung] + * UMLS:C0225701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hilar_Area_of_the_Lung ] * ncithesaurus:Hilar_Area_of_the_Lung ## Subsets @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [hilum](../../UBERON/85/UBERON_0004885.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0004986.md b/md/UBERON/86/UBERON_0004986.md index 3b5c7cc880..f57bdc3e82 100644 --- a/md/UBERON/86/UBERON_0004986.md +++ b/md/UBERON/86/UBERON_0004986.md @@ -3,52 +3,52 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004986 * *Label* = mucosa of deferent duct - * *Definition* = A mucosa that is part of a vas deferens [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a vas deferens [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * deferent duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deferent duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deferent duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deferent duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * deferent ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19240] - * ductus deferens mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus deferens mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus deferens mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ductus deferens organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of deferent duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of sperm duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vas deferen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vas deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sperm duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tunica mucosa (ductus deferens) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19240] - * tunica mucosa ductus deferentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19240[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vas deferen mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferen mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferen mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferen organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferens mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferens mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferens mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vas deferens organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * deferent duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deferent duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deferent duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deferent duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * deferent ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19240 ] + * ductus deferens mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus deferens mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus deferens mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ductus deferens organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of deferent duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of sperm duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vas deferen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vas deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sperm duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tunica mucosa (ductus deferens) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19240 ] + * tunica mucosa ductus deferentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19240, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vas deferen mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferen mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferen mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferen organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferens mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferens mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferens mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vas deferens organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -67,15 +67,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005086.md b/md/UBERON/86/UBERON_0005086.md index f9fd3b6b39..7bda2a2194 100644 --- a/md/UBERON/86/UBERON_0005086.md +++ b/md/UBERON/86/UBERON_0005086.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005086 * *Label* = hair follicle placode - * *Definition* = An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060789] + * *Definition* = An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060789 ] ## Synonyms * vibrissa placode - * hair gem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * hair peg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] + * hair gem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * hair peg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectodermal placode](../../UBERON/85/UBERON_0005085.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [hair follicle](../../UBERON/73/UBERON_0002073.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005186.md b/md/UBERON/86/UBERON_0005186.md index 269c6a29e8..51223e3d92 100644 --- a/md/UBERON/86/UBERON_0005186.md +++ b/md/UBERON/86/UBERON_0005186.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005186 * *Label* = outer renal medulla collecting duct - * *Definition* = A collecting duct of renal tubule that is part of a outer medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collecting duct of renal tubule that is part of a outer medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney outer medulla collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002599] + * kidney outer medulla collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002599 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outer medulla of kidney](../../UBERON/93/UBERON_0001293.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005286.md b/md/UBERON/86/UBERON_0005286.md index 8aa762de74..908344a9e8 100644 --- a/md/UBERON/86/UBERON_0005286.md +++ b/md/UBERON/86/UBERON_0005286.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005286 * *Label* = tela choroidea of midbrain cerebral aqueduct - * *Definition* = Tela choroidea that lines the tectal ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tela choroidea that lines the tectal ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * tela chorioidea tectal ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005157] - * tela choroidea of cerebral aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * tela choroidea tectal ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005157] + * tela chorioidea tectal ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005157 ] + * tela choroidea of cerebral aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * tela choroidea tectal ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005157 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain cerebral aqueduct](../../UBERON/89/UBERON_0002289.md) and [tela choroidea](../../UBERON/83/UBERON_0005283.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tela chorioidea that lines the tectal ventricle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005386.md b/md/UBERON/86/UBERON_0005386.md index 6fcd1c98b4..60d5780d56 100644 --- a/md/UBERON/86/UBERON_0005386.md +++ b/md/UBERON/86/UBERON_0005386.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005386 * *Label* = olfactory mucosa - * *Definition* = That portion of the nasal mucosa containing the sensory endings for olfaction; the organ of smell[MESH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A04.531.520.573[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_mucosa] + * *Definition* = That portion of the nasal mucosa containing the sensory endings for olfaction; the organ of smell[MESH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A04.531.520.573, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_mucosa ] * *Comment* = note uberon uses the term 'mucosa' as 'portion of mucosa', thus the relationship is subclass, not part_of ## Synonyms - * olfactory area of nasal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77199] - * olfactory part of nasal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77199] - * olfactory zone of nasal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77199] - * pars olfactoria tunicae mucosae nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77199[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars olfactoria tunicae mucosae nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_mucosa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * olfactory area of nasal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77199 ] + * olfactory part of nasal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77199 ] + * olfactory zone of nasal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77199 ] + * pars olfactoria tunicae mucosae nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77199, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars olfactoria tunicae mucosae nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_mucosa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:77199 * GAID:303 * MESH:A04.531.520.573 - * UMLS:C0028937 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Mucosa] + * UMLS:C0028937 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Mucosa ] * Wikipedia:Olfactory_mucosa * ncithesaurus:Olfactory_Mucosa @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The olfactory mucosa is located in the upper region of the nasal cavity and is made up of the olfactory epithelium and the underlying lamina propria, connective tissue containing fibroblasts, blood vessels, Bowman's glands and bundles of fine axons from the olfactory neurons. The mucus protects the olfactory epithelium and allows odors to dissolve so that they can be detected by olfactory receptor neurons. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP][Wikipedia:Olfactory_mucosa]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005486.md b/md/UBERON/86/UBERON_0005486.md index 3326385ab7..82f58ed248 100644 --- a/md/UBERON/86/UBERON_0005486.md +++ b/md/UBERON/86/UBERON_0005486.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005486 * *Label* = venous dural sinus - * *Definition* = The dural venous sinuses (also called dural sinuses, cerebral sinuses, or cranial sinuses) are venous channels found between layers of dura mater in the brain.[1] They receive blood from internal and external veins of the brain, receive cerebrospinal fluid (CSF) from the subarachnoid space, and ultimately empty into the internal jugular vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dural_venous_sinuses] + * *Definition* = The dural venous sinuses (also called dural sinuses, cerebral sinuses, or cranial sinuses) are venous channels found between layers of dura mater in the brain.[1] They receive blood from internal and external veins of the brain, receive cerebrospinal fluid (CSF) from the subarachnoid space, and ultimately empty into the internal jugular vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dural_venous_sinuses ] * *Comment* = editor note: the MA placement should be checked ## Synonyms - * cranial dural venous sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50762] - * dural sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50762] - * dural vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002113] - * dural venous sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50762] - * venous dural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA:6491] - * venous dural sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002169] - * s. durae matris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dural_venous_sinuses[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cranial dural venous sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50762 ] + * dural sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50762 ] + * dural vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002113 ] + * dural venous sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50762 ] + * venous dural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA:6491 ] + * venous dural sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002169 ] + * s. durae matris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dural_venous_sinuses, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005586.md b/md/UBERON/86/UBERON_0005586.md index 2ffe6feb4d..46016c994d 100644 --- a/md/UBERON/86/UBERON_0005586.md +++ b/md/UBERON/86/UBERON_0005586.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005586 * *Label* = rhombomere 7 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000783] + * lateral wall rhombomere 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000783 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 7](../../UBERON/23/UBERON_0005523.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005686.md b/md/UBERON/86/UBERON_0005686.md index 78ef6ecb43..5c2a8e50f6 100644 --- a/md/UBERON/86/UBERON_0005686.md +++ b/md/UBERON/86/UBERON_0005686.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005686 * *Label* = caecum dorsal mesentery - * *Definition* = A dorsal mesentery that is part of a caecum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal mesentery that is part of a caecum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal mesentery](../../UBERON/96/UBERON_0002296.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caecum](../../UBERON/53/UBERON_0001153.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005886.md b/md/UBERON/86/UBERON_0005886.md index 63826d0759..94652bf6a4 100644 --- a/md/UBERON/86/UBERON_0005886.md +++ b/md/UBERON/86/UBERON_0005886.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005886 * *Label* = post-hyoid pharyngeal arch skeleton - * *Definition* = A subdivision of skeleton that subdivision_of a post-hyoid pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A subdivision of skeleton that subdivision_of a post-hyoid pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: XAO class belongs here, as it clearly refers to arches 3-7. In ZFA this is part_of the pharyngeal arches, but we retain this structure to refer to the embryonic structure ## Synonyms - * gill arch 1-5 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000095] - * pharyngeal arch 3-7 skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000095] - * branchial arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003180[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * gill arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003180] - * visceral arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003180] + * gill arch 1-5 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000095 ] + * pharyngeal arch 3-7 skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000095 ] + * branchial arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003180, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * gill arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003180 ] + * visceral arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003180 ] ## Cross-references @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal and cartilage elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: part_of anatomical cluster (UBERON:0000477)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0005986.md b/md/UBERON/86/UBERON_0005986.md index a7d9fa0360..9ee9f77763 100644 --- a/md/UBERON/86/UBERON_0005986.md +++ b/md/UBERON/86/UBERON_0005986.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005986 * *Label* = left branch of atrioventricular bundle - * *Definition* = Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9487[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] + * *Definition* = Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9487, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] ## Synonyms - * crus sinistrum (fasciculi atrioventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9487] - * left bundle branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] - * left bundle branch of bundle of His [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0005172] - * left bundle of atrioventricular bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] - * left crus of atrioventricular bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] - * left posterior branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] - * left posterior bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010566] + * crus sinistrum (fasciculi atrioventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9487 ] + * left bundle branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] + * left bundle branch of bundle of His [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0005172 ] + * left bundle of atrioventricular bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] + * left crus of atrioventricular bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] + * left posterior branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] + * left posterior bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010566 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006086.md b/md/UBERON/86/UBERON_0006086.md index ef55e96f0f..01714944bd 100644 --- a/md/UBERON/86/UBERON_0006086.md +++ b/md/UBERON/86/UBERON_0006086.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006086 * *Label* = stria medullaris - * *Definition* = The major afferent track to the habenula from the telencephalon (particularly in the septal side) in all vertebrates[Butler and Hodos]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893] + * *Definition* = The major afferent track to the habenula from the telencephalon (particularly in the septal side) in all vertebrates[Butler and Hodos]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893 ] ## Synonyms - * stria habenularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1066] - * stria medullaris (wenzel - wenzel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1066] - * stria medullaris of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62080[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1066] - * stria medullaris thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1066[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * stria medullaris thalamica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1066] - * sm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1066[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * stria medularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:sm] - * stria medullaris (Wenzel-Wenzel) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:298] - * stria medullaris of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:298] - * submammillothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SMT] + * stria habenularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1066 ] + * stria medullaris (wenzel - wenzel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1066 ] + * stria medullaris of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62080, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1066 ] + * stria medullaris thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1066, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * stria medullaris thalamica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1066 ] + * sm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1066, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * stria medularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:sm ] + * stria medullaris (Wenzel-Wenzel) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:298 ] + * stria medullaris of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:298 ] + * submammillothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SMT ] ## Cross-references @@ -27,9 +27,9 @@ * BM:Die-SM * FMA:62080 * NIF_GrossAnatomy:birnlex_1066 - * NeuroNames:298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1066] + * NeuroNames:298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1066 ] * SCTID:362368004 - * UMLS:C0228321 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1066] + * UMLS:C0228321 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1066 ] ## Subsets @@ -40,7 +40,7 @@ * [stria of neuraxis](../../UBERON/99/UBERON_0013199.md) * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal plus ventral thalamus](../../UBERON/97/UBERON_0001897.md) * [part_of](../../BFO/50/BFO_0000050.md) some [white matter](../../UBERON/16/UBERON_0002316.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [habenula](../../UBERON/04/UBERON_0001904.md) ## Equivalencies @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Stria medullaris of thalamus is a slender fiber bundle on the dorsal surface of the diencephalon which terminates posteriorly in the habenular nuclei[FMA:62080]. * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006286.md b/md/UBERON/86/UBERON_0006286.md index 8261d910aa..222915875f 100644 --- a/md/UBERON/86/UBERON_0006286.md +++ b/md/UBERON/86/UBERON_0006286.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006286 * *Label* = radius cartilage element - * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a radius bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that has_potential_to_develop_into a radius bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [radius endochondral element](../../UBERON/01/UBERON_0015001.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006486.md b/md/UBERON/86/UBERON_0006486.md index 26ce9f5917..4c6309413a 100644 --- a/md/UBERON/86/UBERON_0006486.md +++ b/md/UBERON/86/UBERON_0006486.md @@ -6,15 +6,15 @@ ## Synonyms - * B09-52 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1792] - * BA52 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 52 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1792] - * Brodmann area 52 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81153] - * Brodmann area 52, parainsular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1792] - * area 52 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81153] - * area parainsularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1792] - * parainsular area 52 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81153] - * B09-52 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1792[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-52 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1792 ] + * BA52 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 52 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1792 ] + * Brodmann area 52 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81153 ] + * Brodmann area 52, parainsular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1792 ] + * area 52 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81153 ] + * area parainsularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1792 ] + * parainsular area 52 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81153 ] + * B09-52 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1792, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -22,7 +22,7 @@ * NIF_GrossAnatomy:birnlex_1792 * NeuroNames:2414 * SCTID:384809007 - * UMLS:C1272514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1792] + * UMLS:C1272514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1792 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006586.md b/md/UBERON/86/UBERON_0006586.md index b33d37ffa8..a9b1648f80 100644 --- a/md/UBERON/86/UBERON_0006586.md +++ b/md/UBERON/86/UBERON_0006586.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006586 * *Label* = otolymph - * *Definition* = Transduate located within the osseus labyrinth. Otolymph can be further classified with respect to whether it is within the membranous labyrinth (endolymph) or outside the mebranous labyrinth (perilymph). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Transduate located within the osseus labyrinth. Otolymph can be further classified with respect to whether it is within the membranous labyrinth (endolymph) or outside the mebranous labyrinth (perilymph). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * labyrinthine fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.207.571] + * labyrinthine fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.207.571 ] ## Cross-references * GAID:1183 * MA:0002527 * MESH:A12.207.571 - * UMLS:C1518679 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Otolymph] + * UMLS:C1518679 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Otolymph ] * ncithesaurus:Otolymph ## Subsets @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332[MESH:A12.207.571]) * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0007793 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006686.md b/md/UBERON/86/UBERON_0006686.md index 07110e7055..70c389c7fa 100644 --- a/md/UBERON/86/UBERON_0006686.md +++ b/md/UBERON/86/UBERON_0006686.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006686 * *Label* = spinal vein - * *Definition* = A vein that is part of a vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Spinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76735] - * vena spinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76735[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spinal branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76735] + * Spinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76735 ] + * vena spinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76735, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spinal branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76735 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral column](../../UBERON/30/UBERON_0001130.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0006786.md b/md/UBERON/86/UBERON_0006786.md index 9cf3b36d73..7e8fae18a5 100644 --- a/md/UBERON/86/UBERON_0006786.md +++ b/md/UBERON/86/UBERON_0006786.md @@ -6,8 +6,8 @@ ## Synonyms - * predominantly white regional part of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1023] - * white matter layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83899] + * predominantly white regional part of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1023 ] + * white matter layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83899 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus](../../UBERON/45/UBERON_0001945.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0007186.md b/md/UBERON/86/UBERON_0007186.md index 27696b025a..49110f4358 100644 --- a/md/UBERON/86/UBERON_0007186.md +++ b/md/UBERON/86/UBERON_0007186.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007186 * *Label* = pericardial visceral mesothelium - * *Definition* = A visceral mesothelium that is part of a pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A visceral mesothelium that is part of a pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesothelium of visceral pericardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19741] - * mesothelium of visceral serous pericardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19741] - * visceral serous pericardium mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19741] - * pericardial visceral mehomhelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000778] + * mesothelium of visceral pericardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19741 ] + * mesothelium of visceral serous pericardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19741 ] + * visceral serous pericardium mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19741 ] + * pericardial visceral mehomhelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000778 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pericardium](../../UBERON/07/UBERON_0002407.md) and [visceral mesothelium](../../UBERON/41/UBERON_0007141.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Found in all vertebrates, the VP (visceral pericardium) is also known as the cardiac epimysium. This outermost layer of the epicardium consists of a thin layer of mesothelial cells over a dense network of collagen and elastin fibers.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0007286.md b/md/UBERON/86/UBERON_0007286.md index c4b5deb1a3..3aab35c1d6 100644 --- a/md/UBERON/86/UBERON_0007286.md +++ b/md/UBERON/86/UBERON_0007286.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007286 * *Label* = presumptive floor plate - * *Definition* = A presumptive structure that has_potential_to_develop_into a floor plate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a floor plate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [floor plate](../../UBERON/79/UBERON_0003079.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0007386.md b/md/UBERON/86/UBERON_0007386.md index 0bdacb2743..f477cc4ed0 100644 --- a/md/UBERON/86/UBERON_0007386.md +++ b/md/UBERON/86/UBERON_0007386.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007386 * *Label* = pelvic appendage lymph vessel - * *Definition* = A lymphatic vessel that is part of a pelvic appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel that is part of a pelvic appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphatic vessel](../../UBERON/73/UBERON_0001473.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0007486.md b/md/UBERON/86/UBERON_0007486.md index 7cd59224e7..9ccb42fc33 100644 --- a/md/UBERON/86/UBERON_0007486.md +++ b/md/UBERON/86/UBERON_0007486.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007486 * *Label* = fluid-based anatomical entity - * *Definition* = Fluid anatomical entity containing cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Fluid anatomical entity containing cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003095 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0007686.md b/md/UBERON/86/UBERON_0007686.md index 85c06dc545..2ced5d2a1a 100644 --- a/md/UBERON/86/UBERON_0007686.md +++ b/md/UBERON/86/UBERON_0007686.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007686 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0008286.md b/md/UBERON/86/UBERON_0008286.md index 01b2b3ba6d..67d3ad7055 100644 --- a/md/UBERON/86/UBERON_0008286.md +++ b/md/UBERON/86/UBERON_0008286.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008286 * *Label* = feather calamus - * *Definition* = The hollow basal portion of a feather below the vane[BTO]. At the base of the feather, the rachis expands to form the hollow tubular calamus (or quill) which inserts into a follicle in the skin. The basal part of the calamus is without vanes. This part is embedded within the skin follicle and has an opening at the base (proximal umbilicus) and a small opening on the side (distal umbilicus)[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001608] + * *Definition* = The hollow basal portion of a feather below the vane[BTO]. At the base of the feather, the rachis expands to form the hollow tubular calamus (or quill) which inserts into a follicle in the skin. The basal part of the calamus is without vanes. This part is embedded within the skin follicle and has an opening at the base (proximal umbilicus) and a small opening on the side (distal umbilicus)[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001608 ] ## Synonyms * calamus - * feather quill [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001608] + * feather quill [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001608 ] * quill ## Cross-references @@ -23,7 +23,7 @@ * [organ part](../../UBERON/64/UBERON_0000064.md) * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [part_of](../../BFO/50/BFO_0000050.md) some [feather](../../UBERON/22/UBERON_0000022.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [feather follicle placode](../../UBERON/83/UBERON_0011783.md) ## Equivalencies @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0008586.md b/md/UBERON/86/UBERON_0008586.md index 08061a9d99..821d3ecd00 100644 --- a/md/UBERON/86/UBERON_0008586.md +++ b/md/UBERON/86/UBERON_0008586.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008586 * *Label* = tensor veli palatini - * *Definition* = The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_veli_palatini_muscle] + * *Definition* = The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_veli_palatini_muscle ] ## Synonyms * tensor veli palatini muscle - * musculus tensor veli palatini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_veli_palatini_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tensor palati [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_veli_palatini_muscle] - * tensor palati muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_veli_palatini_muscle] - * tensor veli palatini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tensor_veli_palatini_muscle] + * musculus tensor veli palatini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_veli_palatini_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tensor palati [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_veli_palatini_muscle ] + * tensor palati muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_veli_palatini_muscle ] + * tensor veli palatini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tensor_veli_palatini_muscle ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tensor veli palatini is a muscle of the soft palate that attaches to the cranial base and pharyngotympanic tube, wraps around the pterygoid hamulus and then attaches to the midline palatal raphe of the soft palate that is innervated by cranial nerve V3.[FEED] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0008786.md b/md/UBERON/86/UBERON_0008786.md index 5897c94d89..3201721142 100644 --- a/md/UBERON/86/UBERON_0008786.md +++ b/md/UBERON/86/UBERON_0008786.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008786 * *Label* = third trochanter - * *Definition* = The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Third_trochanter] + * *Definition* = The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Third_trochanter ] ## Synonyms - * trochanter tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Third_trochanter[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * trochanter tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Third_trochanter, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0008886.md b/md/UBERON/86/UBERON_0008886.md index 5ec16d2e3a..ce08df69a8 100644 --- a/md/UBERON/86/UBERON_0008886.md +++ b/md/UBERON/86/UBERON_0008886.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008886 * *Label* = pulmonary vascular system - * *Definition* = The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_circulation] + * *Definition* = The part of the cardiovascular system consisting of all pulmonary arteries and all pulmonary veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_circulation ] ## Synonyms - * pulmonary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * pulmonary circulatory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45621] + * pulmonary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * pulmonary circulatory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45621 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs.[FMA] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0009586.md b/md/UBERON/86/UBERON_0009586.md index 12d0c52d5b..37889904c2 100644 --- a/md/UBERON/86/UBERON_0009586.md +++ b/md/UBERON/86/UBERON_0009586.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009586 * *Label* = mesenchyme of interdigital region between manual digits 1 and 2 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between fingers 1 and 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000846] + * interdigital region between fingers 1 and 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000846 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between manual digits 1 and 2](../../UBERON/26/UBERON_0006026.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0009986.md b/md/UBERON/86/UBERON_0009986.md index 0bb8286f36..4a701230bf 100644 --- a/md/UBERON/86/UBERON_0009986.md +++ b/md/UBERON/86/UBERON_0009986.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009986 * *Label* = lateral epicondyle of femur - * *Definition* = The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_femur] + * *Definition* = The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_femur ] ## Synonyms - * epicondylus lateralis (femur) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32867] - * e. lateralis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral femoral epicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_epicondyle_of_the_femur] + * epicondylus lateralis (femur) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32867 ] + * e. lateralis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral femoral epicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_epicondyle_of_the_femur ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010186.md b/md/UBERON/86/UBERON_0010186.md index 8f16febf04..86076b9bdf 100644 --- a/md/UBERON/86/UBERON_0010186.md +++ b/md/UBERON/86/UBERON_0010186.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010186 * *Label* = male urethral gland - * *Definition* = Any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethral_gland] + * *Definition* = Any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethral_gland ] ## Synonyms - * Littre's gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21443] + * Littre's gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21443 ] * gland of Littre * gland of male urethra * male urethra gland - * urethral gland (male) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21443] - * glandulae urethrales urethrae masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethral_gland[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * urethral gland (male) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21443 ] + * glandulae urethrales urethrae masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethral_gland, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:29645 * FMA:21443 * SCTID:303562001 - * UMLS:C1314737 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urethral_Gland] + * UMLS:C1314737 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urethral_Gland ] * Wikipedia:Urethral_gland * ncithesaurus:Urethral_Gland @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male urethra](../../UBERON/33/UBERON_0001333.md) and [urethral gland](../../UBERON/38/UBERON_0001338.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010286.md b/md/UBERON/86/UBERON_0010286.md index a6f0bb0037..c2624ff976 100644 --- a/md/UBERON/86/UBERON_0010286.md +++ b/md/UBERON/86/UBERON_0010286.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010286 * *Label* = midbrain neural tube - * *Definition* = Portion of neural tube that gives rise to the midbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007039] + * *Definition* = Portion of neural tube that gives rise to the midbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007039 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010386.md b/md/UBERON/86/UBERON_0010386.md index dc98e8137c..59aba9510c 100644 --- a/md/UBERON/86/UBERON_0010386.md +++ b/md/UBERON/86/UBERON_0010386.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010386 * *Label* = peyer's patch follicle - * *Definition* = A lymphoid follicle that is part of a Peyer's patch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphoid follicle that is part of a Peyer's patch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphoid follicle](../../UBERON/44/UBERON_0000444.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Peyer's patch](../../UBERON/11/UBERON_0001211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010586.md b/md/UBERON/86/UBERON_0010586.md index bdc1ec90bd..81f4e31f0d 100644 --- a/md/UBERON/86/UBERON_0010586.md +++ b/md/UBERON/86/UBERON_0010586.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010586 * *Label* = manual digit phalanx pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a manual digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a manual digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * fore limb digit phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * forelimb phalanx pre-cartilage condensation - * hand phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000954] + * hand phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000954 ] * manus phalanx pre-cartilage condensation - * hand digit phalanx pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit phalanx pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manual digit mesenchyme](../../UBERON/57/UBERON_0005257.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010686.md b/md/UBERON/86/UBERON_0010686.md index a0a6602661..02c6b77206 100644 --- a/md/UBERON/86/UBERON_0010686.md +++ b/md/UBERON/86/UBERON_0010686.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010686 * *Label* = manual digit phalanx cartilage element - * *Definition* = A cartilaginous condensation that is part of a manual digit mesenchyme. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a manual digit mesenchyme. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit phalanx cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit phalanx cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit mesenchyme](../../UBERON/57/UBERON_0005257.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010886.md b/md/UBERON/86/UBERON_0010886.md index 6d0420872e..9edb9c732c 100644 --- a/md/UBERON/86/UBERON_0010886.md +++ b/md/UBERON/86/UBERON_0010886.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010886 * *Label* = hindlimb bone pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0010986.md b/md/UBERON/86/UBERON_0010986.md index fe77e85315..d11a9a17cf 100644 --- a/md/UBERON/86/UBERON_0010986.md +++ b/md/UBERON/86/UBERON_0010986.md @@ -6,7 +6,7 @@ ## Synonyms - * serratus anterior pre-muscle mass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001833] + * serratus anterior pre-muscle mass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001833 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0011186.md b/md/UBERON/86/UBERON_0011186.md index c686f5d97c..3dcaedd6e0 100644 --- a/md/UBERON/86/UBERON_0011186.md +++ b/md/UBERON/86/UBERON_0011186.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011186 * *Label* = Krause's gland - * *Definition* = small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Krause's_glands] + * *Definition* = small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Krause's_glands ] ## Synonyms - * Krause gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59056] - * accessory lacrimal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59056] - * conjunctival gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59056] + * Krause gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59056 ] + * accessory lacrimal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59056 ] + * conjunctival gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59056 ] ## Cross-references * FMA:59056 * SCTID:23492003 * SCTID:278359007 - * UMLS:C1306642 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gland_of_Krause] + * UMLS:C1306642 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gland_of_Krause ] * Wikipedia:Krause's_glands * ncithesaurus:Gland_of_Krause @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0011386.md b/md/UBERON/86/UBERON_0011386.md index e1ec0e7be1..6fcb52bd2a 100644 --- a/md/UBERON/86/UBERON_0011386.md +++ b/md/UBERON/86/UBERON_0011386.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011386 * *Label* = facial modiolus - * *Definition* = In facial anatomy, the modiolus is a chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Modiolus_%28face%29] + * *Definition* = In facial anatomy, the modiolus is a chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Modiolus_%28face%29 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0011586.md b/md/UBERON/86/UBERON_0011586.md index 8e345d1bc7..74543f6867 100644 --- a/md/UBERON/86/UBERON_0011586.md +++ b/md/UBERON/86/UBERON_0011586.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = GO:0005578 * *[consider](../../er/oboInOwl#consider.md)* = VSAO:0000021 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011586 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_0011686.md b/md/UBERON/86/UBERON_0011686.md index eee69a47e2..0da280d8fc 100644 --- a/md/UBERON/86/UBERON_0011686.md +++ b/md/UBERON/86/UBERON_0011686.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0011786.md b/md/UBERON/86/UBERON_0011786.md index d4667efc6c..c6d39b8bee 100644 --- a/md/UBERON/86/UBERON_0011786.md +++ b/md/UBERON/86/UBERON_0011786.md @@ -7,7 +7,7 @@ ## Synonyms * main shaft of feather barbule - * barb ramus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * barb ramus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0011986.md b/md/UBERON/86/UBERON_0011986.md index 5e3d5931f1..5ca813d981 100644 --- a/md/UBERON/86/UBERON_0011986.md +++ b/md/UBERON/86/UBERON_0011986.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011986 * *Label* = mucosa of infraorbital sinus - * *Definition* = A mucosa that adjacent_to a infraorbital sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that adjacent_to a infraorbital sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * infraorbital sinus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * infraorbital sinus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [infraorbital sinus](../../UBERON/85/UBERON_0011985.md) and [mucosa](../../UBERON/44/UBERON_0000344.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011986 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0012086.md b/md/UBERON/86/UBERON_0012086.md index e37fe7e328..702f9178d6 100644 --- a/md/UBERON/86/UBERON_0012086.md +++ b/md/UBERON/86/UBERON_0012086.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012086 * *Label* = lumen of parabronchus - * *Definition* = An anatomical cavity that is part of a parabronchus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a parabronchus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [parabronchus](../../UBERON/61/UBERON_0008961.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0012186.md b/md/UBERON/86/UBERON_0012186.md index a3f7af49f7..763f0940c6 100644 --- a/md/UBERON/86/UBERON_0012186.md +++ b/md/UBERON/86/UBERON_0012186.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012186 * *Label* = ovary growing follicle - * *Definition* = An ovarian follicle undergoing maturation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Growing_Follicle] + * *Definition* = An ovarian follicle undergoing maturation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Growing_Follicle ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0001708 - * UMLS:C1512279 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Growing_Follicle] + * UMLS:C1512279 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Growing_Follicle ] * ncithesaurus:Growing_Follicle ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012186 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0012286.md b/md/UBERON/86/UBERON_0012286.md index c6b1157f70..d55667d3c6 100644 --- a/md/UBERON/86/UBERON_0012286.md +++ b/md/UBERON/86/UBERON_0012286.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012286 * *Label* = hemisphere of embryo - * *Definition* = One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Polarity_in_embryogenesis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/153] + * *Definition* = One of two hemispheres of the embryo at the zygote or blastula stage[WP,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Polarity_in_embryogenesis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/153 ] * *Comment* = Usage notes: Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion. ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0012486.md b/md/UBERON/86/UBERON_0012486.md index cd72e517da..89e8f0a589 100644 --- a/md/UBERON/86/UBERON_0012486.md +++ b/md/UBERON/86/UBERON_0012486.md @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cloaca](../../UBERON/62/UBERON_0000162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0013486.md b/md/UBERON/86/UBERON_0013486.md index 7cb7e416f4..d1c1e53336 100644 --- a/md/UBERON/86/UBERON_0013486.md +++ b/md/UBERON/86/UBERON_0013486.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013486 * *Label* = crypt of Lieberkuhn of appendix - * *Definition* = An intestinal crypt that is located in the appendix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = An intestinal crypt that is located in the appendix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [crypt of Lieberkuhn](../../UBERON/83/UBERON_0001983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0013586.md b/md/UBERON/86/UBERON_0013586.md index 8012ef1717..b8131dbe65 100644 --- a/md/UBERON/86/UBERON_0013586.md +++ b/md/UBERON/86/UBERON_0013586.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013586 * *Label* = fused metapodial bones 3 and 4 - * *Definition* = An element formed from the fusion of metapodium 3 and metapodium 4 (i.e. either metatarsals 3 and 4 or metacarpals 3 and 4). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0001-7920-5321] + * *Definition* = An element formed from the fusion of metapodium 3 and metapodium 4 (i.e. either metatarsals 3 and 4 or metacarpals 3 and 4). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0001-7920-5321 ] * *Comment* = This class can be used in annotation when it is unclear whether the element is a fusion of the metacarpal and metatarsal elements. ## Synonyms @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [metapodium bone 3](../../UBERON/83/UBERON_0013583.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metapodium bone 4](../../UBERON/84/UBERON_0013584.md) and [metapodium bone](../../UBERON/21/UBERON_0003821.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_91561 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013586 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0013686.md b/md/UBERON/86/UBERON_0013686.md index 975c47ea68..68fb6c6e58 100644 --- a/md/UBERON/86/UBERON_0013686.md +++ b/md/UBERON/86/UBERON_0013686.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013686 * *Label* = anatomical conduit space - * *Definition* = Anatomical space which connects two or more compartment spaces or two or more anatomical cavities. Examples: foramen magnum, pyloric orifice, space of right inguinal canal, nutrient canal space, [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9338] + * *Definition* = Anatomical space which connects two or more compartment spaces or two or more anatomical cavities. Examples: foramen magnum, pyloric orifice, space of right inguinal canal, nutrient canal space, [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9338 ] ## Synonyms @@ -26,11 +26,13 @@ ## Other Logical Axioms + * SubClassOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014286.md b/md/UBERON/86/UBERON_0014286.md index 29aa11f2ca..eec29e7f99 100644 --- a/md/UBERON/86/UBERON_0014286.md +++ b/md/UBERON/86/UBERON_0014286.md @@ -6,7 +6,7 @@ ## Synonyms - * dorsal cap of kooy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100307] + * dorsal cap of kooy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100307 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014286 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014386.md b/md/UBERON/86/UBERON_0014386.md index b73bc5317d..38fefdecd3 100644 --- a/md/UBERON/86/UBERON_0014386.md +++ b/md/UBERON/86/UBERON_0014386.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014386 * *Label* = vertebral endplate - * *Definition* = Either of the the top and bottom portions of the vertebral bodies that interface with the vertebral discs. It is composed of a layer of thickened cancellous bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HPO:curators[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endplates] + * *Definition* = Either of the the top and bottom portions of the vertebral bodies that interface with the vertebral discs. It is composed of a layer of thickened cancellous bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HPO:curators, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endplates ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014386 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014486.md b/md/UBERON/86/UBERON_0014486.md index 33e59106dc..258125bd77 100644 --- a/md/UBERON/86/UBERON_0014486.md +++ b/md/UBERON/86/UBERON_0014486.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014486 * *Label* = distal phalanx of digit 4 - * *Definition* = A distal phalanx that is part of a digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal phalanx that is part of a digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -14,9 +14,9 @@ * distal phalanx of ring digit * fourth digit distal phalanx * fourth distal phalanx - * lateral claw of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * lateral claw of ruminant hoof [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] - * lateral ungual phalanx of artiodactyl [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:91561] + * lateral claw of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * lateral claw of ruminant hoof [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] + * lateral ungual phalanx of artiodactyl [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:91561 ] * digit IV P3 ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014486 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014686.md b/md/UBERON/86/UBERON_0014686.md index 39747fc601..147f3162cd 100644 --- a/md/UBERON/86/UBERON_0014686.md +++ b/md/UBERON/86/UBERON_0014686.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014686 * *Label* = angular vein - * *Definition* = The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Angular_vein] + * *Definition* = The angular vein formed by the junction of the frontal vein and supraorbital vein, runs obliquely downward, on the side of the root of the nose, to the level of the lower margin of the orbit, where it becomes the anterior facial vein. It receives the external nasal veins of the ala nasi, and communicates with the superior ophthalmic vein through the nasofrontal vein, thus establishing an important anastomosis between the anterior facial vein and the cavernous sinus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Angular_vein ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014686 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014786.md b/md/UBERON/86/UBERON_0014786.md index eb49207b74..8102534040 100644 --- a/md/UBERON/86/UBERON_0014786.md +++ b/md/UBERON/86/UBERON_0014786.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014786 * *Label* = extraembryonic umbilical vein - * *Definition* = Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000015] + * *Definition* = Extraembryonic part of the vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000015 ] ## Synonyms - * extraembryonic umbilical vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000015] + * extraembryonic umbilical vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000015 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014786 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0014886.md b/md/UBERON/86/UBERON_0014886.md index d8dee94be9..f95bacf7ce 100644 --- a/md/UBERON/86/UBERON_0014886.md +++ b/md/UBERON/86/UBERON_0014886.md @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx of manus](../../UBERON/65/UBERON_0003865.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014886 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_0015086.md b/md/UBERON/86/UBERON_0015086.md index 70cffec514..a8091b0bfd 100644 --- a/md/UBERON/86/UBERON_0015086.md +++ b/md/UBERON/86/UBERON_0015086.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal carpal bone 1 endochondral element](../../UBERON/84/UBERON_0015084.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015086 + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2000286.md b/md/UBERON/86/UBERON_2000286.md index 1ef1f32138..82df40eefe 100644 --- a/md/UBERON/86/UBERON_2000286.md +++ b/md/UBERON/86/UBERON_2000286.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2000586.md b/md/UBERON/86/UBERON_2000586.md index 11b2e98c5c..280d81e40c 100644 --- a/md/UBERON/86/UBERON_2000586.md +++ b/md/UBERON/86/UBERON_2000586.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000586 * *Label* = preural 2 vertebra - * *Definition* = Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * antepenultimate vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000586] - * preural centrum 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000586] - * pu2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000586] - * third last vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000586] + * antepenultimate vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000586 ] + * preural centrum 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000586 ] + * pu2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000586 ] + * third last vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000586 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2000886.md b/md/UBERON/86/UBERON_2000886.md index 0a4d4eb617..12b987ceb8 100644 --- a/md/UBERON/86/UBERON_2000886.md +++ b/md/UBERON/86/UBERON_2000886.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 9 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000886[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 9 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000886, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_2000986.md b/md/UBERON/86/UBERON_2000986.md index ca50f4401a..f1af676f36 100644 --- a/md/UBERON/86/UBERON_2000986.md +++ b/md/UBERON/86/UBERON_2000986.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000986 * *Label* = hypaxial region somite 27 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001086.md b/md/UBERON/86/UBERON_2001086.md index 257c3ca82d..e73c9698a2 100644 --- a/md/UBERON/86/UBERON_2001086.md +++ b/md/UBERON/86/UBERON_2001086.md @@ -7,8 +7,8 @@ ## Synonyms - * muscle pioneers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001086[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * non migratory adaxial cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001086] + * muscle pioneers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001086, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * non migratory adaxial cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001086 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_2001186.md b/md/UBERON/86/UBERON_2001186.md index 25f1c1cdec..28fbdc5b82 100644 --- a/md/UBERON/86/UBERON_2001186.md +++ b/md/UBERON/86/UBERON_2001186.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001186 * *Label* = collagenous dermal stroma - * *Definition* = A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * primary dermal stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001186] + * primary dermal stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001186 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001286.md b/md/UBERON/86/UBERON_2001286.md index 9849d913ee..0719cbd99e 100644 --- a/md/UBERON/86/UBERON_2001286.md +++ b/md/UBERON/86/UBERON_2001286.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001586.md b/md/UBERON/86/UBERON_2001586.md index 3f28500aa8..54b6a23036 100644 --- a/md/UBERON/86/UBERON_2001586.md +++ b/md/UBERON/86/UBERON_2001586.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001586 * *Label* = pectoral fin radial bone - * *Definition* = pectoral fin radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. ## Synonyms - * pectoral actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001586] + * pectoral actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001586 ] ## Cross-references @@ -27,14 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin radial element](../../UBERON/86/UBERON_2101586.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001686.md b/md/UBERON/86/UBERON_2001686.md index c08d8d4840..8d5fe08d63 100644 --- a/md/UBERON/86/UBERON_2001686.md +++ b/md/UBERON/86/UBERON_2001686.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001686 * *Label* = bony shelf above orbit - * *Definition* = The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = The bony shelf above orbit is an anatomical cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001786.md b/md/UBERON/86/UBERON_2001786.md index 26fbaacce4..e0d4f7cf5f 100644 --- a/md/UBERON/86/UBERON_2001786.md +++ b/md/UBERON/86/UBERON_2001786.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001886.md b/md/UBERON/86/UBERON_2001886.md index 6ab0ba1624..58a799a3fa 100644 --- a/md/UBERON/86/UBERON_2001886.md +++ b/md/UBERON/86/UBERON_2001886.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001886 * *Label* = neural spine 2 - * *Definition* = Neural spine that is associated with the second vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural spine that is associated with the second vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2001986.md b/md/UBERON/86/UBERON_2001986.md index 363845eb35..17bcefa881 100644 --- a/md/UBERON/86/UBERON_2001986.md +++ b/md/UBERON/86/UBERON_2001986.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001986 * *Label* = centrum 4 - * *Definition* = Centrum that is part of vertebra 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2002086.md b/md/UBERON/86/UBERON_2002086.md index 86b14e5f9c..0b61ba89a2 100644 --- a/md/UBERON/86/UBERON_2002086.md +++ b/md/UBERON/86/UBERON_2002086.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002086 * *Label* = pelvic axillary process - * *Definition* = Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Anatomical cluster consisting of only a bony element or a combination of a bony element and one or more scales, or only modified scales, which lies in a fin fold at the base of the uppermost ray. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2005186.md b/md/UBERON/86/UBERON_2005186.md index 25cebed61d..2f4f4ead3e 100644 --- a/md/UBERON/86/UBERON_2005186.md +++ b/md/UBERON/86/UBERON_2005186.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005186 * *Label* = obsolete CoB - * *Definition* = A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-649] + * *Definition* = A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-649 ] * *Comment* = This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. This may be the same as CoBL. incorrectly generalized to teleosts so being obsoleted. ## Synonyms - * bifurcate commissural interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005186] + * bifurcate commissural interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005186 ] ## Cross-references @@ -32,8 +32,10 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_2101586.md b/md/UBERON/86/UBERON_2101586.md index 5efff5b127..4188fc5bf2 100644 --- a/md/UBERON/86/UBERON_2101586.md +++ b/md/UBERON/86/UBERON_2101586.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101586 * *Label* = pectoral fin radial element - * *Definition* = Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = There are two paired series of pectoral radial elements, the proximal and the distal ones that may have variable shapes and sizes. ## Synonyms - * pectoral actinost [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001586] + * pectoral actinost [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001586 ] ## Cross-references @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral fin](../../UBERON/51/UBERON_0000151.md) and [radial element](../../UBERON/71/UBERON_2100271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_2201586.md b/md/UBERON/86/UBERON_2201586.md index 6dd2459d39..da1176a49b 100644 --- a/md/UBERON/86/UBERON_2201586.md +++ b/md/UBERON/86/UBERON_2201586.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201586 * *Label* = pectoral fin radial cartilage - * *Definition* = pectoral fin radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin radial element](../../UBERON/86/UBERON_2101586.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000086.md b/md/UBERON/86/UBERON_3000086.md index 1c3dd0eaca..a91bb65447 100644 --- a/md/UBERON/86/UBERON_3000086.md +++ b/md/UBERON/86/UBERON_3000086.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000386.md b/md/UBERON/86/UBERON_3000386.md index a0931fbf78..ceb915e36b 100644 --- a/md/UBERON/86/UBERON_3000386.md +++ b/md/UBERON/86/UBERON_3000386.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000386 * *Label* = cultriform process - * *Definition* = Process that extends anteriorly from the orbitotemporal region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Process that extends anteriorly from the orbitotemporal region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000386] - * rostrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000386] + * pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000386 ] + * rostrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000386 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000486.md b/md/UBERON/86/UBERON_3000486.md index 5beab52af3..70649c5c1d 100644 --- a/md/UBERON/86/UBERON_3000486.md +++ b/md/UBERON/86/UBERON_3000486.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000486 * *Label* = processus ascendens plectri - * *Definition* = Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Cartilaginous or ligamentous connection between the pars externa plectri and the crista parotica. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * laterohyale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000486] - * processus ascendens columellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000486] - * processus dorsalis columellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000486] - * processus superior columellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000486] - * suprastapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000486] + * laterohyale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000486 ] + * processus ascendens columellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000486 ] + * processus dorsalis columellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000486 ] + * processus superior columellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000486 ] + * suprastapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000486 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000586.md b/md/UBERON/86/UBERON_3000586.md index 4738bda62e..f18b81f6f3 100644 --- a/md/UBERON/86/UBERON_3000586.md +++ b/md/UBERON/86/UBERON_3000586.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000586 * *Label* = superior prenasal cartilage - * *Definition* = Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000786.md b/md/UBERON/86/UBERON_3000786.md index 769977de0a..19ebfa6eed 100644 --- a/md/UBERON/86/UBERON_3000786.md +++ b/md/UBERON/86/UBERON_3000786.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000786 * *Label* = fossa cubitalis ventralis - * *Definition* = Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3000886.md b/md/UBERON/86/UBERON_3000886.md index c9dd90d667..37c8ac84b5 100644 --- a/md/UBERON/86/UBERON_3000886.md +++ b/md/UBERON/86/UBERON_3000886.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000886 * *Label* = ypsiloid cartilage - * *Definition* = Y-shaped cartilage lying in the middle line, anterior to the pubo-ischium with which it articulates. It lies dorsal to the rectus abdominis muscle with which it articulates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Y-shaped cartilage lying in the middle line, anterior to the pubo-ischium with which it articulates. It lies dorsal to the rectus abdominis muscle with which it articulates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * abdominal sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000886] - * cartilago epipubes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000886] - * cartilago marsupial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000886] - * cartilago ypsiloidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000886] - * cartilago ypsiloides [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000886] + * abdominal sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000886 ] + * cartilago epipubes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000886 ] + * cartilago marsupial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000886 ] + * cartilago ypsiloidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000886 ] + * cartilago ypsiloides [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000886 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3010186.md b/md/UBERON/86/UBERON_3010186.md index 4af842f469..99d4207203 100644 --- a/md/UBERON/86/UBERON_3010186.md +++ b/md/UBERON/86/UBERON_3010186.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3010286.md b/md/UBERON/86/UBERON_3010286.md index 4e6afb6027..cafb0ddd2d 100644 --- a/md/UBERON/86/UBERON_3010286.md +++ b/md/UBERON/86/UBERON_3010286.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010286 * *Label* = obsolete chondrocyte - * *Definition* = Polymorphic cell type that forms cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Polymorphic cell type that forms cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000138 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/86/UBERON_3010586.md b/md/UBERON/86/UBERON_3010586.md index 54910ff6b8..c5fc3a9843 100644 --- a/md/UBERON/86/UBERON_3010586.md +++ b/md/UBERON/86/UBERON_3010586.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010586 * *Label* = vasa efferentia - * *Definition* = Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_3010786.md b/md/UBERON/86/UBERON_3010786.md index 477aa4d7ba..950578d59f 100644 --- a/md/UBERON/86/UBERON_3010786.md +++ b/md/UBERON/86/UBERON_3010786.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_4000086.md b/md/UBERON/86/UBERON_4000086.md index 772d212264..df044a4ff2 100644 --- a/md/UBERON/86/UBERON_4000086.md +++ b/md/UBERON/86/UBERON_4000086.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000086 * *Label* = secondary cartilage tissue - * *Definition* = Cartilage tissue that is part of the exoskeleton, deposited adjacent to bone after bone formation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Cartilage tissue that is part of the exoskeleton, deposited adjacent to bone after bone formation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_4200086.md b/md/UBERON/86/UBERON_4200086.md index 58f50c6dc5..7d3ac037a9 100644 --- a/md/UBERON/86/UBERON_4200086.md +++ b/md/UBERON/86/UBERON_4200086.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/86/UBERON_4200186.md b/md/UBERON/86/UBERON_4200186.md index f79514c1f1..08978d2dc3 100644 --- a/md/UBERON/86/UBERON_4200186.md +++ b/md/UBERON/86/UBERON_4200186.md @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0000087.md b/md/UBERON/87/UBERON_0000087.md index 055323a869..041f939362 100644 --- a/md/UBERON/87/UBERON_0000087.md +++ b/md/UBERON/87/UBERON_0000087.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000087 * *Label* = inner cell mass - * *Definition* = Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inner_cell_mass] + * *Definition* = Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inner_cell_mass ] ## Synonyms - * ICM [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000742] + * ICM [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000742 ] * embryoblast - * embryoblastus; massa cellularis interna; pluriblastus senior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inner_cell_mass[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * embryoblastus; massa cellularis interna; pluriblastus senior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inner_cell_mass, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pluriblast ## Cross-references @@ -20,7 +20,7 @@ * EMAPA:16041 * FMA:86557 * SCTID:361456007 - * UMLS:C1283994 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Cell_Mass] + * UMLS:C1283994 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Cell_Mass ] * VHOG:0000742 * Wikipedia:Inner_cell_mass * http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A group of cells found in the mammalian blastocyst that give rise to the embryo. [Biology_Online][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = A small sphere of cells known as the inner cell mass lies within the trophoblast (of all eutherian mammals).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0000387.md b/md/UBERON/87/UBERON_0000387.md index f659c039a1..6ba76124bf 100644 --- a/md/UBERON/87/UBERON_0000387.md +++ b/md/UBERON/87/UBERON_0000387.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000387 * *Label* = meniscus - * *Definition* = crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Meniscus_(anatomy)] + * *Definition* = crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Meniscus_(anatomy) ] ## Synonyms - * articular disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76690] + * articular disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76690 ] ## Cross-references * BTO:0001592 * EV:0100145 * FMA:76690 - * UMLS:C0224498 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Meniscus] + * UMLS:C0224498 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Meniscus ] * Wikipedia:Meniscus_(anatomy) * galen:Meniscus * ncithesaurus:Meniscus @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0000487.md b/md/UBERON/87/UBERON_0000487.md index 7f8fbc973f..2406b34ba7 100644 --- a/md/UBERON/87/UBERON_0000487.md +++ b/md/UBERON/87/UBERON_0000487.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000487 * *Label* = simple squamous epithelium - * *Definition* = Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45565[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Simple_squamous_epithelium] + * *Definition* = Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45565, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Simple_squamous_epithelium ] ## Synonyms @@ -20,7 +20,7 @@ * FMA:45565 * HAO:0000070 * TAO:0001498 - * UMLS:C0836133 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Simple_Squamous_Epithelium] + * UMLS:C0836133 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Simple_Squamous_Epithelium ] * Wikipedia:Simple_squamous_epithelium * XAO:0004010 * ZFA:0001498 @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [squamous epithelial cell](../../CL/76/CL_0000076.md) and [unilaminar epithelium](../../UBERON/90/UBERON_0000490.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of squamous cells.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of squamous cells.[CARO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Unilaminar epithelium that consists of a single layer of squamous cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0000987.md b/md/UBERON/87/UBERON_0000987.md index 3eb935fb8c..eb58250ef5 100644 --- a/md/UBERON/87/UBERON_0000987.md +++ b/md/UBERON/87/UBERON_0000987.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000987 * *Label* = haltere - * *Definition* = The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FB:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3110148986[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Haltere] + * *Definition* = The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FB:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3110148986, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haltere ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001087.md b/md/UBERON/87/UBERON_0001087.md index c23250bc31..22f75ff640 100644 --- a/md/UBERON/87/UBERON_0001087.md +++ b/md/UBERON/87/UBERON_0001087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001087 * *Label* = pleural fluid - * *Definition* = Transudate contained in the pleural cavity.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pleural_fluid] + * *Definition* = Transudate contained in the pleural cavity.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pleural_fluid ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [pleural cavity](../../UBERON/02/UBERON_0002402.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001187.md b/md/UBERON/87/UBERON_0001187.md index d66ec451bb..d8e52ff338 100644 --- a/md/UBERON/87/UBERON_0001187.md +++ b/md/UBERON/87/UBERON_0001187.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001187 * *Label* = testicular artery - * *Definition* = The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_artery] + * *Definition* = The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * testicular arterial tree - * arteria testicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testicular_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria testicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testicular_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [testis](../../UBERON/73/UBERON_0000473.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001287.md b/md/UBERON/87/UBERON_0001287.md index 7e37d0c820..837fd16a41 100644 --- a/md/UBERON/87/UBERON_0001287.md +++ b/md/UBERON/87/UBERON_0001287.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001287 * *Label* = proximal convoluted tubule - * *Definition* = The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proximal_convoluted_tubule] + * *Definition* = The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proximal_convoluted_tubule ] * *Comment* = TODO - cleanly define difference between proximal tubule and proximal convoluted tubule. Make definition applicable across species. ## Synonyms @@ -13,8 +13,8 @@ * 1st convoluted tubule * PCT * first convoluted tubule - * tubulus contortus proximalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proximal_convoluted_tubule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tubulus convolutus proximalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tubulus contortus proximalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proximal_convoluted_tubule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tubulus convolutus proximalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001669 * SCTID:362220008 * TAO:0005290 - * UMLS:C1514580 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Proximal_Convoluted_Tube] + * UMLS:C1514580 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Proximal_Convoluted_Tube ] * Wikipedia:Proximal_convoluted_tubule * ZFA:0005290 * http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png @@ -54,8 +54,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Renal tubule that connects to the renal corpuscle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001387.md b/md/UBERON/87/UBERON_0001387.md index 6255a883e7..7d949b29a2 100644 --- a/md/UBERON/87/UBERON_0001387.md +++ b/md/UBERON/87/UBERON_0001387.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001387 * *Label* = fibularis longus - * *Definition* = In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] + * *Definition* = In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * musculus peroneus longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22539[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus peroneus longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22539, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * peroneus longus * peroneus longus muscle - * fibularis longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] - * fibularis longus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] - * peronaei longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] - * peronaeus longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] - * peroneous longus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] - * peroneus longus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Peroneus_longus] + * fibularis longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] + * fibularis longus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] + * peronaei longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] + * peronaeus longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] + * peroneous longus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] + * peroneus longus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Peroneus_longus ] ## Cross-references * FMA:22539 * MA:0002356 * SCTID:361825008 - * UMLS:C0224469 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peroneus_Longus] + * UMLS:C0224469 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peroneus_Longus ] * Wikipedia:Peroneus_longus * galen:PeroneusLongus * http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001487.md b/md/UBERON/87/UBERON_0001487.md index fd3e25a9d0..9b7ab62bf2 100644 --- a/md/UBERON/87/UBERON_0001487.md +++ b/md/UBERON/87/UBERON_0001487.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001487 * *Label* = pes joint - * *Definition* = A skeletal joint that is part of a pes [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that is part of a pes [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO check FMA - use the set class for now ## Synonyms - * articulationes pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71349[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulationes pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71349, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * foot joint - * hind limb autopod joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hind limb autopod joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * joint of pes - * joint of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joints of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71349[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * joint of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joints of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71349, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * pedal joint ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71349 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001587.md b/md/UBERON/87/UBERON_0001587.md index 9e7663ec0e..54a85d5ee5 100644 --- a/md/UBERON/87/UBERON_0001587.md +++ b/md/UBERON/87/UBERON_0001587.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001587 * *Label* = subclavian vein - * *Definition* = In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_vein] + * *Definition* = In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * subclavian venous tree - * vena subclavia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subclavian_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena subclavia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subclavian_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A07.231.908.877 * OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA * SCTID:181388005 - * UMLS:C0038532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subclavian_Vein] + * UMLS:C0038532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subclavian_Vein ] * Wikipedia:Subclavian_vein * galen:SubclavianVein * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from the forelimb via the brachial veins and from the muscles and skin of the trunk via the anterior epigastric and lateral veins.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001687.md b/md/UBERON/87/UBERON_0001687.md index fba85a7aff..bc34177cc8 100644 --- a/md/UBERON/87/UBERON_0001687.md +++ b/md/UBERON/87/UBERON_0001687.md @@ -1,26 +1,26 @@ -## Class : stapes +## Class : stapes bone * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001687 - * *Label* = stapes - * *Definition* = The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stapes[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/j.1469-7580.2005.00441.x] - * *Comment* = Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] + * *Label* = stapes bone + * *Definition* = The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stapes, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/j.1469-7580.2005.00441.x ] + * *Comment* = Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] ## Synonyms * stirrup - * columella [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stapes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * columella auris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * interstapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * mediostapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * mesostapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * os columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * os intermedium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * stapellos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stapes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * stelidium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] - * stilus columellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000580] + * columella [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stapes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * columella auris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * interstapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * mediostapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * mesostapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * os columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * os intermedium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * stapellos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stapes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * stelidium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] + * stilus columellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000580 ] ## Cross-references @@ -31,7 +31,7 @@ * MESH:A09.246.397.247.806 * OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA * SCTID:264199009 - * UMLS:C0038152 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stapes] + * UMLS:C0038152 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stapes ] * VHOG:0000688 * Wikipedia:Stapes * http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png @@ -57,7 +57,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [stapes endochondral element](../../UBERON/16/UBERON_0015016.md) ## Other Logical Axioms @@ -66,8 +66,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001787.md b/md/UBERON/87/UBERON_0001787.md index 3180e8cbca..693cf64c60 100644 --- a/md/UBERON/87/UBERON_0001787.md +++ b/md/UBERON/87/UBERON_0001787.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001787 * *Label* = photoreceptor layer of retina - * *Definition* = The layer within the retina where the photoreceptor cell receptor segments reside. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Layer_of_rods_and_cones[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000143] + * *Definition* = The layer within the retina where the photoreceptor cell receptor segments reside. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Layer_of_rods_and_cones, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000143 ] * *Comment* = we follow MA and ZFA in subdividing this into inner and outer segments ## Synonyms * retina photoreceptor layer - * retinal photoreceptor layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000143] + * retinal photoreceptor layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000143 ] * stratum segmentorum externorum et internorum (retina) * layer of rods and cones @@ -18,7 +18,7 @@ * FMA:58680 * MA:0001308 * TAO:0000143 - * UMLS:C0229206 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Layer_of_the_Rods_and_Cones] + * UMLS:C0229206 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Layer_of_the_Rods_and_Cones ] * VHOG:0001165 * Wikipedia:Layer_of_rods_and_cones * XAO:0003215 @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001887.md b/md/UBERON/87/UBERON_0001887.md index 20a543c9ba..c18e6f7d6e 100644 --- a/md/UBERON/87/UBERON_0001887.md +++ b/md/UBERON/87/UBERON_0001887.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001887 * *Label* = internal capsule - * *Definition* = Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_capsule] + * *Definition* = Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_capsule ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * internal capsule radiations - * capsula interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_capsule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal capsule2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ic] + * capsula interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_capsule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal capsule2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ic ] ## Cross-references @@ -24,8 +24,8 @@ * MA:0002748 * MESH:A08.186.211.730.885.435 * NIF_GrossAnatomy:birnlex_1659 - * UMLS:C0152341 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1659] - * UMLS:C0152341 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Capsule] + * UMLS:C0152341 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1659 ] + * UMLS:C0152341 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Capsule ] * Wikipedia:Internal_capsule * http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0001987.md b/md/UBERON/87/UBERON_0001987.md index 049a06a1c8..d17a542f36 100644 --- a/md/UBERON/87/UBERON_0001987.md +++ b/md/UBERON/87/UBERON_0001987.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001987 * *Label* = placenta - * *Definition* = organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Placenta[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] + * *Definition* = organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Placenta, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm ] * *Comment* = Taxon notes: Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 "Vertebrates, Kardong"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 // Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities. ## Synonyms - * allantoic placenta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * allantoic placenta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * eutherian placenta ## Cross-references @@ -25,7 +25,7 @@ * MIAA:0000279 * OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA * SCTID:181455002 - * UMLS:C0032043 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Placenta] + * UMLS:C0032043 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Placenta ] * VHOG:0001266 * Wikipedia:Placenta * http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg @@ -62,8 +62,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Phylogenetic analyses of the concatenated data set using maximum parsimony, maximum likelihood and distance based (neighbour joining) methods all converged on a nearly identical, well supported topology defining four principal eutherian lineages. The results affirm monophyly of traditional placental orders (except Artiodactyla and Insectivora), and also support some previously proposed, as well as new, superordinal clades.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = placental * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002087.md b/md/UBERON/87/UBERON_0002087.md index 373790747f..0ec06fce46 100644 --- a/md/UBERON/87/UBERON_0002087.md +++ b/md/UBERON/87/UBERON_0002087.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002087 * *Label* = atrioventricular canal - * *Definition* = The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrioventricular_canal[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/38] + * *Definition* = The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrioventricular_canal, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/38 ] * *Comment* = AO notes - this is a lumen in EHDAA2. Development notes: The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve ## Synonyms * AV canal - * atrial canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrial_canal] - * atrio-ventricular canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000152] - * canalis atrioventricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atrioventricular_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * atrial canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrial_canal ] + * atrio-ventricular canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000152 ] + * canalis atrioventricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atrioventricular_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002187.md b/md/UBERON/87/UBERON_0002187.md index 9ee7015580..ab5f8cc5a1 100644 --- a/md/UBERON/87/UBERON_0002187.md +++ b/md/UBERON/87/UBERON_0002187.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002187 * *Label* = terminal bronchiole - * *Definition* = A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_bronchiole] + * *Definition* = A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_bronchiole ] ## Synonyms - * bronchiolus terminalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bronchioli terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Terminal_bronchiole[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bronchiolus terminalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bronchioli terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Terminal_bronchiole, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * terminal bronchiole tube ## Cross-references @@ -18,7 +18,7 @@ * MA:0000424 * OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA * SCTID:278981008 - * UMLS:C0225666 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Terminal_Bronchiole] + * UMLS:C0225666 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Terminal_Bronchiole ] * Wikipedia:Terminal_bronchiole * http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002287.md b/md/UBERON/87/UBERON_0002287.md index 01d86b86eb..3f43e90482 100644 --- a/md/UBERON/87/UBERON_0002287.md +++ b/md/UBERON/87/UBERON_0002287.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002287 * *Label* = optic recess of third ventricle - * *Definition* = Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_144280] + * *Definition* = Recess in third ventricle lying in front of the optic chiasm at the base of the lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_144280 ] * *Comment* = TODO - check taxonomic grouping ## Synonyms * optic recess * preoptic recess - * recessus supraopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78455[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * recessus supraopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78455, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * supraoptic recess - * optic recesses [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000595] + * optic recesses [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000595 ] * preoptic recess * recessus opticus * recessus praeopticus - * recessus supraopticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_recess[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * recessus supraopticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_recess, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * supraoptic recess ## Cross-references @@ -61,8 +61,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted][Wikipedia:Optic_recess]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The optic recess of the third ventricle, i.e. the pouch of the ventricle penetrating into the interval between the initial optic tracts. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002387.md b/md/UBERON/87/UBERON_0002387.md index c77ff31438..01da444f39 100644 --- a/md/UBERON/87/UBERON_0002387.md +++ b/md/UBERON/87/UBERON_0002387.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002387 * *Label* = pes - * *Definition* = distal portion of the hind limb, including tarsal region, metatarsal region and digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foot[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pes_(anatomy)] + * *Definition* = distal portion of the hind limb, including tarsal region, metatarsal region and digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foot, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pes_(anatomy) ] * *Comment* = Editors note: consider renaming using less human-centric terminology ## Synonyms - * foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000044] - * hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000044 ] + * hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * terminal segment of free lower limb * hind foot - * hind paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17428[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hind-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17428, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hind-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] * hindfoot * hindfoot of quadruped - * hind limb autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000350] + * hind limb autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000350 ] ## Cross-references @@ -34,7 +34,7 @@ * MESH:A01.378.610.250 * OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA * SCTID:302545001 - * UMLS:C0016504 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot] + * UMLS:C0016504 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot ] * VHOG:0000350 * Wikipedia:Pes_(anatomy) * galen:Foot @@ -56,7 +56,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod region](../../UBERON/70/UBERON_0002470.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = pedal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002487.md b/md/UBERON/87/UBERON_0002487.md index 32744e83fd..6392acbc2b 100644 --- a/md/UBERON/87/UBERON_0002487.md +++ b/md/UBERON/87/UBERON_0002487.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002487 * *Label* = tooth cavity - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tooth_cavity] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tooth_cavity ] ## Synonyms * cavitas dentis - * cavitas pulparis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55660[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cavitas pulparis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55660, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pulp cavity * pulp cavity of tooth - * cavity of tooth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002792] - * tooth pulp cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002792] + * cavity of tooth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002792 ] + * tooth pulp cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002792 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002587.md b/md/UBERON/87/UBERON_0002587.md index e1bae44e06..95c77ff10c 100644 --- a/md/UBERON/87/UBERON_0002587.md +++ b/md/UBERON/87/UBERON_0002587.md @@ -6,11 +6,11 @@ ## Synonyms - * nucleus subcaeruleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72479[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subcaerulean nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72479] + * nucleus subcaeruleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72479, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subcaerulean nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72479 ] * subceruleus nucleus * subcoeruleus nucleus - * nucleus subcoeruleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SLC] + * nucleus subcoeruleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SLC ] ## Cross-references @@ -19,8 +19,8 @@ * BAMS:SubC * FMA:72479 * NIF_GrossAnatomy:birnlex_1088 - * NeuroNames:584 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1088] - * UMLS:C0175441 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1088] + * NeuroNames:584 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1088 ] + * UMLS:C0175441 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1088 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002687.md b/md/UBERON/87/UBERON_0002687.md index 51402dd315..8e90ee03ae 100644 --- a/md/UBERON/87/UBERON_0002687.md +++ b/md/UBERON/87/UBERON_0002687.md @@ -7,23 +7,23 @@ ## Synonyms * anteromedial part of ventral lateral posterior nucleus (jones) - * area X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62198] - * area X of Olszewski [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1379] - * nucleus lateralis intermedius mediodorsalis situs ventralis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1379] - * nucleus ventralis oralis, pars posterior (dewulf) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1379] - * nucleus ventrooralis internus (hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1379] - * nucleus ventrooralis internus, superior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1379] - * X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1379[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nucleus X [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:X] - * nucleus ventro-oralis internus (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:342[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * area X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62198 ] + * area X of Olszewski [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1379 ] + * nucleus lateralis intermedius mediodorsalis situs ventralis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1379 ] + * nucleus ventralis oralis, pars posterior (dewulf) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1379 ] + * nucleus ventrooralis internus (hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1379 ] + * nucleus ventrooralis internus, superior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1379 ] + * X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1379, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nucleus X [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:X ] + * nucleus ventro-oralis internus (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:342, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:X * FMA:62198 * NIF_GrossAnatomy:birnlex_1379 - * NeuroNames:342 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1379] - * UMLS:C0262201 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1379] + * NeuroNames:342 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1379 ] + * UMLS:C0262201 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1379 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002787.md b/md/UBERON/87/UBERON_0002787.md index f64100b331..e801eae283 100644 --- a/md/UBERON/87/UBERON_0002787.md +++ b/md/UBERON/87/UBERON_0002787.md @@ -6,13 +6,13 @@ ## Synonyms - * decussation of trochlear nerve (IV) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72488] - * trochlear neural decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72488] - * decussatio nervorum trochlearium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:595[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio trochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:595[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation of the trochlear nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:595] - * trochlear decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:4x] - * trochlear nerve decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:595] + * decussation of trochlear nerve (IV) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72488 ] + * trochlear neural decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72488 ] + * decussatio nervorum trochlearium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:595, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio trochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:595, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation of the trochlear nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:595 ] + * trochlear decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:4x ] + * trochlear nerve decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:595 ] ## Cross-references @@ -20,8 +20,8 @@ * BAMS:IVd * FMA:72488 * NIF_GrossAnatomy:birnlex_1690 - * NeuroNames:595 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1690] - * UMLS:C0175448 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1690] + * NeuroNames:595 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1690 ] + * UMLS:C0175448 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1690 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002887.md b/md/UBERON/87/UBERON_0002887.md index bb3924ee69..c50c6c2557 100644 --- a/md/UBERON/87/UBERON_0002887.md +++ b/md/UBERON/87/UBERON_0002887.md @@ -6,23 +6,23 @@ ## Synonyms - * basolateral amygaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2692] - * basolateral amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2692] - * basolateral amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68855] + * basolateral amygaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2692 ] + * basolateral amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2692 ] + * basolateral amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68855 ] * basolateral nucleus (de olmos) - * intermediate principal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68855] - * nucleus amygdalae basalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68855[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basal nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * basolateral amygdaloid nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLA] - * basolateral amygdaloid nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BLA] - * basolateral nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * basolateral nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246] - * bed nucleus of the accessory olfactory part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BA] - * bed nucleus of the accessory olfactory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BA] - * nucleus amygdalae basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basolateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:246[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * intermediate principal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68855 ] + * nucleus amygdalae basalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68855, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basal nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * basolateral amygdaloid nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLA ] + * basolateral amygdaloid nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BLA ] + * basolateral nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * basolateral nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246 ] + * bed nucleus of the accessory olfactory part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BA ] + * bed nucleus of the accessory olfactory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BA ] + * nucleus amygdalae basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basolateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:246, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,8 @@ * FMA:68855 * MA:0002921 * NIF_GrossAnatomy:birnlex_2692 - * NeuroNames:246 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2692] - * UMLS:C0175222 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2692] + * NeuroNames:246 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2692 ] + * UMLS:C0175222 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2692 ] ## Subsets @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0002987.md b/md/UBERON/87/UBERON_0002987.md index 70b8b73965..824e9d618c 100644 --- a/md/UBERON/87/UBERON_0002987.md +++ b/md/UBERON/87/UBERON_0002987.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002987 * *Label* = anterior spinocerebellar tract - * *Definition* = Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_848] + * *Definition* = Runs through the ventrolateral surface of the spinal cord. It enters the cerebellum through the superior cerebellar peduncle. It crosses the midline at the segmental level and recrosses in the cerebellum. Its terminals are distributed in the cerebellar anterior lobe, preferentially in the ipsilateral intermediate cortex. Rostrally, it extends to lobule II. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_848 ] ## Synonyms - * gower's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_848] - * gowers' tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72642] - * ventral spinocerebellar tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72642] - * tractus spinocerebellaris anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:808[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus spinocerebellaris ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:808[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral spinocerebellar tract (Gowers) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:808] + * gower's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_848 ] + * gowers' tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72642 ] + * ventral spinocerebellar tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72642 ] + * tractus spinocerebellaris anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:808, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus spinocerebellaris ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:808, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral spinocerebellar tract (Gowers) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:808 ] ## Cross-references @@ -21,9 +21,9 @@ * BAMS:vsc * FMA:72642 * NIF_GrossAnatomy:birnlex_848 - * NeuroNames:808 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_848] + * NeuroNames:808 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_848 ] * SCTID:369285001 - * UMLS:C0175561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_848] + * UMLS:C0175561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_848 ] * Wikipedia:Ventral_spinocerebellar_tract * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted][Wikipedia:Ventral_spinocerebellar_tract]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003087.md b/md/UBERON/87/UBERON_0003087.md index d4b21c8921..25c5c9c6a7 100644 --- a/md/UBERON/87/UBERON_0003087.md +++ b/md/UBERON/87/UBERON_0003087.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003087 * *Label* = anterior cardinal vein - * *Definition* = One of the the two paired cardinal veins draining the cephalic part of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004784[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cardinal_vein] + * *Definition* = One of the the two paired cardinal veins draining the cephalic part of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004784, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cardinal_vein ] * *Comment* = contribute to the formation of the internal jugular veins and together with the common cardinal vein form the superior vena cava. In an anastomosis by anterior cardinal veins, the left brachiocephalic vein is produced[WP] ## Synonyms - * rostral cardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000423] + * rostral cardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000423 ] * ACV - * precardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70309[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_cardinal_vein] + * precardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70309, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_cardinal_vein ] * rostral cardinal veins - * superior cardinal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.embryology.ch/anglais/pcardio/venen01.html] + * superior cardinal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.embryology.ch/anglais/pcardio/venen01.html ] ## Cross-references @@ -24,7 +24,7 @@ * FMA:70309 * SCTID:308780006 * TAO:0000423 - * UMLS:C0231086 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Cardinal_Vein] + * UMLS:C0231086 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Cardinal_Vein ] * VHOG:0000113 * Wikipedia:Anterior_cardinal_vein * XAO:0000383 @@ -52,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In primitive vertebrates, the basic early embryonic pattern is retained, and blood from anterior and posterior systemic tissues is returned in anterior and posterior cardinal veins, both pairs of veins uniting in common cardinal veins near the heart. In derived vertebrates, the cardinals appear but usually persist only in the embryo, being functionally replaced by alternative adult vessels, the precava and postcava (anterior and posterior venae cavae).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009770 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003187.md b/md/UBERON/87/UBERON_0003187.md index c714d8ad6f..7bd94e4abe 100644 --- a/md/UBERON/87/UBERON_0003187.md +++ b/md/UBERON/87/UBERON_0003187.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004653 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000820 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003187 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_0003287.md b/md/UBERON/87/UBERON_0003287.md index b719fac17e..90b4df7aa4 100644 --- a/md/UBERON/87/UBERON_0003287.md +++ b/md/UBERON/87/UBERON_0003287.md @@ -6,7 +6,7 @@ ## Synonyms - * midgut duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * midgut duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003387.md b/md/UBERON/87/UBERON_0003387.md index bca5b9b536..fad953a6b2 100644 --- a/md/UBERON/87/UBERON_0003387.md +++ b/md/UBERON/87/UBERON_0003387.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003387 * *Label* = smooth muscle of trachea - * *Definition* = A portion of smooth muscle tissue that is part of a trachea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a trachea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * trachea smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001863] - * tracheal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001391] + * trachea smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001863 ] + * tracheal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001391 ] ## Cross-references @@ -16,7 +16,7 @@ * EMAPA:19192 * FMA:262010 * MA:0001863 - * UMLS:C1710458 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Smooth_Muscle_Tissue] + * UMLS:C1710458 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Smooth_Muscle_Tissue ] * ncithesaurus:Trachea_Smooth_Muscle_Tissue ## Subsets @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004244 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003487.md b/md/UBERON/87/UBERON_0003487.md index 0a5e5def83..31b7ac4106 100644 --- a/md/UBERON/87/UBERON_0003487.md +++ b/md/UBERON/87/UBERON_0003487.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003487 * *Label* = skin sebaceous gland - * *Definition* = A holocrine gland of the dermis that secretes sebum into hair follicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009535] + * *Definition* = A holocrine gland of the dermis that secretes sebum into hair follicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009535 ] ## Synonyms * cutaneous sebaceous gland - * sebaceous gland of skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * sebaceous gland of skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003587.md b/md/UBERON/87/UBERON_0003587.md index fff1675960..95902a1310 100644 --- a/md/UBERON/87/UBERON_0003587.md +++ b/md/UBERON/87/UBERON_0003587.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003587 * *Label* = limb connective tissue - * *Definition* = A portion of connective tissue that is part of a limb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a limb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [limb](../../UBERON/01/UBERON_0002101.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003687.md b/md/UBERON/87/UBERON_0003687.md index fbd9856bd1..9c0d8331f2 100644 --- a/md/UBERON/87/UBERON_0003687.md +++ b/md/UBERON/87/UBERON_0003687.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003687 * *Label* = foramen magnum - * *Definition* = In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_magnum] + * *Definition* = In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_magnum ] ## Synonyms @@ -17,7 +17,7 @@ * OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA * SCTID:244679008 * TAO:0002045 - * UMLS:C0016519 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_Magnum] + * UMLS:C0016519 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_Magnum ] * Wikipedia:Foramen_magnum * ZFA:0005387 * http://upload.wikimedia.org/wikipedia/commons/3/39/Gray130.png @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Foramen in the occipital region of neurocranium to allow passage of spinal cord.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003887.md b/md/UBERON/87/UBERON_0003887.md index f13022c922..375e2c0ecc 100644 --- a/md/UBERON/87/UBERON_0003887.md +++ b/md/UBERON/87/UBERON_0003887.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003887 * *Label* = intraembryonic coelom - * *Definition* = In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intraembryonic_coelom] + * *Definition* = In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intraembryonic_coelom ] * *Comment* = Editor notes: consider merging with coelom. TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults ## Synonyms - * somatic coelom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intraembryonic_coelom] + * somatic coelom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intraembryonic_coelom ] ## Cross-references * EHDAA:251 * EMAPA:16088 - * UMLS:C1512940 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Intraembryonic_Coelom] + * UMLS:C1512940 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Intraembryonic_Coelom ] * VHOG:0000316 * Wikipedia:Intraembryonic_coelom * ncithesaurus:Intraembryonic_Coelom @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) I regard it unlikely that coeloms of all bilaterian animals are comparable and evolved very early. Considering all these questions, few convincing characters concerning the evolution of body cavities remain to be named. (...) A segmental coelom appears to have evolved at least two times, in Annelida and in Myomerata (Acrania and Craniota).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0003987.md b/md/UBERON/87/UBERON_0003987.md index d80983b37d..79a936d9a0 100644 --- a/md/UBERON/87/UBERON_0003987.md +++ b/md/UBERON/87/UBERON_0003987.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003987 * *Label* = Hassall's corpuscle - * *Definition* = the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009539] + * *Definition* = the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009539 ] ## Synonyms @@ -12,7 +12,7 @@ * MA:0000772 * SCTID:34223001 - * UMLS:C0229950 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hassall_s_Corpuscle] + * UMLS:C0229950 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hassall_s_Corpuscle ] * ncithesaurus:Hassall_s_Corpuscle ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004087.md b/md/UBERON/87/UBERON_0004087.md index 7390c115d5..b9ee705f78 100644 --- a/md/UBERON/87/UBERON_0004087.md +++ b/md/UBERON/87/UBERON_0004087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004087 * *Label* = vena cava - * *Definition* = The superior and inferior vena cava are collectively called the venae cavae. They are the veins that return deoxygenated blood from the body into the heart. They both empty into the right atrium. The inferior vena cava (or posterior vena cava in animals) travels up alongside the abdominal aorta with blood from the lower part of the body (see # 11 in the diagram). It is the largest vein in the body. The superior vena cava (or anterior vena cava in animals) is above the heart, and forms from a convergence of the left and right brachiocephalic veins that contain blood from the head and the arms (see # 3 in the diagram). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venae_cavae] + * *Definition* = The superior and inferior vena cava are collectively called the venae cavae. They are the veins that return deoxygenated blood from the body into the heart. They both empty into the right atrium. The inferior vena cava (or posterior vena cava in animals) travels up alongside the abdominal aorta with blood from the lower part of the body (see # 11 in the diagram). It is the largest vein in the body. The superior vena cava (or anterior vena cava in animals) is above the heart, and forms from a convergence of the left and right brachiocephalic veins that contain blood from the head and the arms (see # 3 in the diagram). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venae_cavae ] ## Synonyms @@ -18,7 +18,7 @@ * MESH:A07.231.908.949 * OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw * SCTID:244405007 - * UMLS:C0042460 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vena_Cava] + * UMLS:C0042460 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vena_Cava ] * Wikipedia:Venae_cavae * http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Heart_numlabels.png/200px-Heart_numlabels.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004187.md b/md/UBERON/87/UBERON_0004187.md index ec5390b471..9cc5cb4900 100644 --- a/md/UBERON/87/UBERON_0004187.md +++ b/md/UBERON/87/UBERON_0004187.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004187 * *Label* = Harderian gland - * *Definition* = The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. An accessory lacrimal gland on the inner side of the orbit in reptiles and birds but usually degenerate in mammals[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0070384[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Harderian_gland] + * *Definition* = The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. An accessory lacrimal gland on the inner side of the orbit in reptiles and birds but usually degenerate in mammals[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0070384, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Harderian_gland ] ## Synonyms @@ -19,7 +19,7 @@ * MA:0001247 * MESH:A13.445 * SCTID:41474005 - * UMLS:C0018597 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Harderian_Gland] + * UMLS:C0018597 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Harderian_Gland ] * Wikipedia:Harderian_gland * ncithesaurus:Harderian_Gland @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004387.md b/md/UBERON/87/UBERON_0004387.md index 961d4a1765..c0c919abe6 100644 --- a/md/UBERON/87/UBERON_0004387.md +++ b/md/UBERON/87/UBERON_0004387.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004387 * *Label* = epiphysis of phalanx of manus - * *Definition* = An epiphysis that is part of a phalanx of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a phalanx of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [phalanx of manus](../../UBERON/36/UBERON_0001436.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004487.md b/md/UBERON/87/UBERON_0004487.md index 38a1064583..a996b8be76 100644 --- a/md/UBERON/87/UBERON_0004487.md +++ b/md/UBERON/87/UBERON_0004487.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004487 * *Label* = musculature of forelimb zeugopod - * *Definition* = Any collection of muscles that is part of a lower arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a lower arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscle group of forearm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:39089] - * musculature of forearm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:39089] - * set of muscles of forearm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:39089] + * muscle group of forearm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:39089 ] + * musculature of forearm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:39089 ] + * set of muscles of forearm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:39089 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb zeugopod](../../UBERON/86/UBERON_0002386.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004687.md b/md/UBERON/87/UBERON_0004687.md index e352779d7f..3578557dd6 100644 --- a/md/UBERON/87/UBERON_0004687.md +++ b/md/UBERON/87/UBERON_0004687.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004687 * *Label* = lieno-renal ligament - * *Definition* = peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenorenal_ligament[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html] + * *Definition* = peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenorenal_ligament, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html ] * *Comment* = Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from ## Synonyms - * lienorenal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522] - * ligamentum lienorenale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ligamentum splenorenale (lienorenale, phrenicosplenicum) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522] - * phrenicolienal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522] - * splenicorenal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522] - * splenorenal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16522] + * lienorenal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522 ] + * ligamentum lienorenale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ligamentum splenorenale (lienorenale, phrenicosplenicum) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522 ] + * phrenicolienal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522 ] + * splenicorenal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522 ] + * splenorenal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16522 ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004787.md b/md/UBERON/87/UBERON_0004787.md index c418490d00..bc7ca45f35 100644 --- a/md/UBERON/87/UBERON_0004787.md +++ b/md/UBERON/87/UBERON_0004787.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004787 * *Label* = urethra urothelium - * *Definition* = An urothelium that is part of a urethra [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An urothelium that is part of a urethra [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * urethra Uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uroepithelium of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urothelium of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * urethra Uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uroepithelium of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urothelium of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001687 - * UMLS:C1710585 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urethra_Transitional_Cell_Epithelium] + * UMLS:C1710585 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urethra_Transitional_Cell_Epithelium ] * ncithesaurus:Urethra_Transitional_Cell_Epithelium ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) and [urothelium](../../UBERON/65/UBERON_0000365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004887.md b/md/UBERON/87/UBERON_0004887.md index 93ce138bef..2242021a3d 100644 --- a/md/UBERON/87/UBERON_0004887.md +++ b/md/UBERON/87/UBERON_0004887.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004887 * *Label* = left lung hilus - * *Definition* = A lung hilus that is part of the left lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lung hilus that is part of the left lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * hilum of left lung - * hilus of left lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left lung hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * left pulmonary hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9751] - * left pulmonary hilus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hilus of left lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left lung hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * left pulmonary hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9751 ] + * left pulmonary hilus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lung hilus](../../UBERON/86/UBERON_0004886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [left lung](../../UBERON/68/UBERON_0002168.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the left lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0004987.md b/md/UBERON/87/UBERON_0004987.md index 66993620a7..65894bb7af 100644 --- a/md/UBERON/87/UBERON_0004987.md +++ b/md/UBERON/87/UBERON_0004987.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004987 * *Label* = mucosa of laryngopharynx - * *Definition* = A mucosa that is part of a hypopharynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a hypopharynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hypopharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypopharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypopharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hypopharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal pharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal pharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal pharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngeal pharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngopharynx mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngopharynx mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngopharynx mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * laryngopharynx organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of hypopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of hypopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of laryngopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of hypopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of laryngopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of hypopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of laryngopharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hypopharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypopharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypopharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hypopharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal pharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal pharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal pharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngeal pharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngopharynx mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngopharynx mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngopharynx mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * laryngopharynx organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of hypopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of hypopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of laryngopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of hypopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of laryngopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of hypopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of laryngopharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -46,15 +46,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypopharynx](../../UBERON/51/UBERON_0001051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005087.md b/md/UBERON/87/UBERON_0005087.md index fe3a943f50..864feb9c13 100644 --- a/md/UBERON/87/UBERON_0005087.md +++ b/md/UBERON/87/UBERON_0005087.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005087 * *Label* = tooth placode - * *Definition* = An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060790] + * *Definition* = An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060790 ] * *Comment* = Location notes: In mammals this may be located in the alveolar ridges, but note that some species such as zebrafish have ceratobranchial teeth. Sharks have dermal denticles that share developmental origins. Currently we don't include location information due to this diversity, but in future we may include specific subclasses and/or taxon GCIs. ## Synonyms - * dental placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * dental primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001153] - * odontogenic placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tooth germ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001153] + * dental placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * dental primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001153 ] + * odontogenic placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tooth germ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001153 ] ## Cross-references @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectodermal placode](../../UBERON/85/UBERON_0005085.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms @@ -38,8 +38,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005187.md b/md/UBERON/87/UBERON_0005187.md index ef2892bd7e..5eecc8f966 100644 --- a/md/UBERON/87/UBERON_0005187.md +++ b/md/UBERON/87/UBERON_0005187.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005187 * *Label* = inner renal medulla collecting duct - * *Definition* = A collecting duct of renal tubule that is part of a inner medulla of kidney [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A collecting duct of renal tubule that is part of a inner medulla of kidney [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney inner medulla collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002598] - * papillary collecting duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002598] + * kidney inner medulla collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002598 ] + * papillary collecting duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002598 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inner medulla of kidney](../../UBERON/94/UBERON_0001294.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005287.md b/md/UBERON/87/UBERON_0005287.md index 0060ba66ae..2f47398d63 100644 --- a/md/UBERON/87/UBERON_0005287.md +++ b/md/UBERON/87/UBERON_0005287.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005287 * *Label* = tela choroidea of fourth ventricle - * *Definition* = Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tela_chorioidea_of_fourth_ventricle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tela_chorioidea_of_fourth_ventricle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * choroid membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78493] - * choroid membrane of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78493] + * choroid membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78493 ] + * choroid membrane of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78493 ] * tela chorioidea fourth ventricle * tela choroidea fourth ventricle * tela choroidea of fourth ventricle - * tela choroidea ventriculi quarti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78493[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tela choroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78493[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * tela choroidea ventriculi quarti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tela_chorioidea_of_fourth_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tela choroidea ventriculi quarti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78493, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tela choroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78493, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * tela choroidea ventriculi quarti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tela_chorioidea_of_fourth_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) and [tela choroidea](../../UBERON/83/UBERON_0005283.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tela chorioidea that lines the fourth ventricle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005387.md b/md/UBERON/87/UBERON_0005387.md index fc3644cc44..a310384e62 100644 --- a/md/UBERON/87/UBERON_0005387.md +++ b/md/UBERON/87/UBERON_0005387.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005387 * *Label* = olfactory glomerulus - * *Definition* = One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. a spherical structure located in the olfactory bulb of the brain where the synapses form between the olfactory nerve terminals and dendrites of mitral, periglomerular and tufted cells. Each glomerulus is surrounded by periglomerular neurons and glial cells which gives it an oval shape.[1][2] All glomeruli are located near the surface of the olfactory bulb. In mammals, glomeruli typically range between 50-120 m in diameter and number between 1800 and 2400 depending on the species.[1][2] Each glomerulus is composed of two compartments, the olfactory nerve zone and the non-olfactory nerve zone. The olfactory nerve zone is composed of preterminals and terminals of the olfactory nerve and is where the olfactory receptor cells make synapses on their targets.[2] The non-olfactory nerve zone is composed of the dendritic processes of intrinsic neurons and is where dendrodendritic interactions between intrinsic neurons occur.[2] It is the first site for synaptic processing of odor information coming from the nose. It is made up of a globular tangle of axons from the olfactory receptor neurons in the olfactory epithelium, and dendrites from the mitral cell as well as from juxtaglomerular cells that include tufted cells, periglomerular cells, short axon cells, and astrocytes[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckMedicus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glomerulus_(olfaction)] + * *Definition* = One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. a spherical structure located in the olfactory bulb of the brain where the synapses form between the olfactory nerve terminals and dendrites of mitral, periglomerular and tufted cells. Each glomerulus is surrounded by periglomerular neurons and glial cells which gives it an oval shape.[1][2] All glomeruli are located near the surface of the olfactory bulb. In mammals, glomeruli typically range between 50-120 m in diameter and number between 1800 and 2400 depending on the species.[1][2] Each glomerulus is composed of two compartments, the olfactory nerve zone and the non-olfactory nerve zone. The olfactory nerve zone is composed of preterminals and terminals of the olfactory nerve and is where the olfactory receptor cells make synapses on their targets.[2] The non-olfactory nerve zone is composed of the dendritic processes of intrinsic neurons and is where dendrodendritic interactions between intrinsic neurons occur.[2] It is the first site for synaptic processing of odor information coming from the nose. It is made up of a globular tangle of axons from the olfactory receptor neurons in the olfactory epithelium, and dendrites from the mitral cell as well as from juxtaglomerular cells that include tufted cells, periglomerular cells, short axon cells, and astrocytes[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckMedicus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glomerulus_(olfaction) ] * *Comment* = subcellular component, realm of GO? ## Synonyms - * glomerulus of olfactory bulb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * olfactory bulb glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * olfactory glomeruli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * glomerulus of olfactory bulb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * olfactory bulb glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * olfactory glomeruli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neural glomerulus](../../UBERON/47/UBERON_0001047.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0011916 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005487.md b/md/UBERON/87/UBERON_0005487.md index 06e385c0d8..94e604890d 100644 --- a/md/UBERON/87/UBERON_0005487.md +++ b/md/UBERON/87/UBERON_0005487.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005487 * *Label* = vitelline vein - * *Definition* = One of two veins which drain blood from the yolk sac. They run upward at first in front, and subsequently on either side of the intestinal canal. They unite on the ventral aspect of the canal, and beyond this are connected to one another by two anastomotic branches, one on the dorsal, and the other on the ventral aspect of the duodenal portion of the intestine, which is thus encircled by two venous rings; into the middle or dorsal anastomosis the superior mesenteric vein opens. The portions of the veins above the upper ring become interrupted by the developing liver and broken up by it into a plexus of small capillary-like vessels termed sinusoids. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_veins] + * *Definition* = One of two veins which drain blood from the yolk sac. They run upward at first in front, and subsequently on either side of the intestinal canal. They unite on the ventral aspect of the canal, and beyond this are connected to one another by two anastomotic branches, one on the dorsal, and the other on the ventral aspect of the duodenal portion of the intestine, which is thus encircled by two venous rings; into the middle or dorsal anastomosis the superior mesenteric vein opens. The portions of the veins above the upper ring become interrupted by the developing liver and broken up by it into a plexus of small capillary-like vessels termed sinusoids. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_veins ] * *Comment* = AO notes: check zfa (no text def). Check vitelline/omphalomesenteric distinction in XAO ## Synonyms - * embryonic vitelline vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000401] - * vena vitellina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitelline_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * omphalomesenteric vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16244] + * embryonic vitelline vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000401 ] + * vena vitellina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitelline_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * omphalomesenteric vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16244 ] * vein of omphalomesenteric system ## Cross-references @@ -23,7 +23,7 @@ * SCTID:2730004 * SCTID:308832003 * TAO:0005035 - * UMLS:C0231091 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vitelline_Vein] + * UMLS:C0231091 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vitelline_Vein ] * VHOG:0000401 * Wikipedia:Vitelline_veins * XAO:0000376 @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of two veins that run upward at first in front, and subsequently on either side of the intestinal canal. They unite on the ventral aspect of the canal, and beyond this are connected to one another by two anastomotic branches, one on the dorsal, and the other on the ventral aspect of the duodenal portion of the intestine, which is thus encircled by two venous rings; into the middle or dorsal anastomosis the superior mesenteric vein opens. The portions of the veins above the upper ring become interrupted by the developing liver and broken up by it into a plexus of small capillary-like vessels termed sinusoids.[XAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Within each vertebrate group, the veins compose a few main functional systems that arise embryologically from what seems to be a common developmental pattern. (...) Early in development, three major sets of paired veins are present: the vitelline veins from the yolk sac, the cardinal veins from the body of the embryo itself, and the lateral abdominal veins from the pelvic region. The paired vitelline veins are among the first vessels to appear in the embryo. They arise over the yolk and follow the yolk stalk into the body. They then turn anteriorly, continue along the gut, and enter the sinus venosus.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005587.md b/md/UBERON/87/UBERON_0005587.md index 7a2e0f15d0..36b58202b6 100644 --- a/md/UBERON/87/UBERON_0005587.md +++ b/md/UBERON/87/UBERON_0005587.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005587 * *Label* = rhombomere 7 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000951] + * roof plate rhombomere 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000951 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 7](../../UBERON/23/UBERON_0005523.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005687.md b/md/UBERON/87/UBERON_0005687.md index 88f86eed25..ce1de7d7b0 100644 --- a/md/UBERON/87/UBERON_0005687.md +++ b/md/UBERON/87/UBERON_0005687.md @@ -6,7 +6,7 @@ ## Synonyms - * sphenoid lesser wing cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001329] + * sphenoid lesser wing cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001329 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [orbitosphenoid endochondral element](../../UBERON/59/UBERON_0015059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005787.md b/md/UBERON/87/UBERON_0005787.md index def4f69965..80657800a7 100644 --- a/md/UBERON/87/UBERON_0005787.md +++ b/md/UBERON/87/UBERON_0005787.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005787 * *Label* = lamina densa of glomerular basement membrane - * *Definition* = Middle layer of the glomerular basement membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Middle layer of the glomerular basement membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * lamina densa of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74276] - * middle layer of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74276] - * lamina densa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005286] + * lamina densa of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74276 ] + * middle layer of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74276 ] + * lamina densa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005286 ] ## Cross-references * FMA:74276 * TAO:0005286 - * UMLS:C1235665 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lamina_Densa] + * UMLS:C1235665 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lamina_Densa ] * ZFA:0005286 * ncithesaurus:Lamina_Densa @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [acellular anatomical structure](../../UBERON/76/UBERON_0000476.md) and [adjacent to](../../RO/20/RO_0002220.md) some [lamina rara externa](../../UBERON/89/UBERON_0005789.md) and [adjacent to](../../RO/20/RO_0002220.md) some [lamina rara interna](../../UBERON/88/UBERON_0005788.md) and [part_of](../../BFO/50/BFO_0000050.md) some [glomerular basement membrane](../../UBERON/77/UBERON_0005777.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0005987.md b/md/UBERON/87/UBERON_0005987.md index 664d4a84aa..6f9163841e 100644 --- a/md/UBERON/87/UBERON_0005987.md +++ b/md/UBERON/87/UBERON_0005987.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005987 * *Label* = right branch of atrioventricular bundle - * *Definition* = Subdivision of conducting system of heart which enters the septal myocardium of right ventricle to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9486[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010567] + * *Definition* = Subdivision of conducting system of heart which enters the septal myocardium of right ventricle to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9486, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010567 ] ## Synonyms - * crus dextrum (fasciculi atrioventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9486] - * right bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9486[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010567] - * right bundle branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9486] + * crus dextrum (fasciculi atrioventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9486 ] + * right bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9486, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010567 ] + * right bundle branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9486 ] * right bundle branch of bundle of His - * right right crus of atrioventricular bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010567] - * right ventricular bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010567] + * right right crus of atrioventricular bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010567 ] + * right ventricular bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010567 ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006087.md b/md/UBERON/87/UBERON_0006087.md index 0e97fa6774..5bf4e9aaad 100644 --- a/md/UBERON/87/UBERON_0006087.md +++ b/md/UBERON/87/UBERON_0006087.md @@ -6,15 +6,15 @@ ## Synonyms - * arcuate fibers medial lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1091] - * fibrae arcuatae internae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72629[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * internal arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72629] - * internal arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1091] - * internal arcuate fibres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72629] - * internal arcuate tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72629] - * arcuate fibers (medial lemniscus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:795] - * fibre arciformes olivares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:795[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibre arciformes sensibiles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:795[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arcuate fibers medial lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1091 ] + * fibrae arcuatae internae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72629, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * internal arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72629 ] + * internal arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1091 ] + * internal arcuate fibres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72629 ] + * internal arcuate tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72629 ] + * arcuate fibers (medial lemniscus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:795 ] + * fibre arciformes olivares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:795, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibre arciformes sensibiles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:795, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * BAMS:iaf * FMA:72629 * NIF_GrossAnatomy:birnlex_1091 - * NeuroNames:795 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1091] - * UMLS:C0228533 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1091] + * NeuroNames:795 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1091 ] + * UMLS:C0228533 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1091 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006287.md b/md/UBERON/87/UBERON_0006287.md index 96c6bb7157..ce54ea0a24 100644 --- a/md/UBERON/87/UBERON_0006287.md +++ b/md/UBERON/87/UBERON_0006287.md @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [radius-ulna endochondral element](../../UBERON/02/UBERON_0015002.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006487.md b/md/UBERON/87/UBERON_0006487.md index 927510866f..454dec56d0 100644 --- a/md/UBERON/87/UBERON_0006487.md +++ b/md/UBERON/87/UBERON_0006487.md @@ -6,8 +6,8 @@ ## Synonyms - * hadjikhani et al. (1998) visuotopic area v2d [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4055] - * V2d [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_4055[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * hadjikhani et al. (1998) visuotopic area v2d [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4055 ] + * V2d [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_4055, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006587.md b/md/UBERON/87/UBERON_0006587.md index 66bfe1d82d..6754951f22 100644 --- a/md/UBERON/87/UBERON_0006587.md +++ b/md/UBERON/87/UBERON_0006587.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006587 * *Label* = ligamentum venosum - * *Definition* = The ligamentum venosum is the fibrous remnant of the ductus venosus of the fetal circulation. Usually, it is attached to the left branch of the portal vein within the porta hepatis (gateway to the liver). It may be continuous with the round ligament of liver (ligamentum teres hepatis). It is invested by the peritoneal folds of the lesser omentum within a fissure on the inferior surface of the liver between the caudate and main parts of the left lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligamentum_venosum] + * *Definition* = The ligamentum venosum is the fibrous remnant of the ductus venosus of the fetal circulation. Usually, it is attached to the left branch of the portal vein within the porta hepatis (gateway to the liver). It may be continuous with the round ligament of liver (ligamentum teres hepatis). It is invested by the peritoneal folds of the lesser omentum within a fissure on the inferior surface of the liver between the caudate and main parts of the left lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligamentum_venosum ] ## Synonyms - * ligament of arantius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14080] - * ligamentum venosum (ductus venosus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14080] - * ligamentum venosum of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14080] - * ligamentum venosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ligamentum_venosum] + * ligament of arantius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14080 ] + * ligamentum venosum (ductus venosus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14080 ] + * ligamentum venosum of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14080 ] + * ligamentum venosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ligamentum_venosum ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006687.md b/md/UBERON/87/UBERON_0006687.md index 5cc5aaaf8f..e64cdc5df7 100644 --- a/md/UBERON/87/UBERON_0006687.md +++ b/md/UBERON/87/UBERON_0006687.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0006787.md b/md/UBERON/87/UBERON_0006787.md index e20e651421..2c30a8d238 100644 --- a/md/UBERON/87/UBERON_0006787.md +++ b/md/UBERON/87/UBERON_0006787.md @@ -6,17 +6,17 @@ ## Synonyms - * intermediate white layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71113] - * intermediate white layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71113] - * lamina V of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris v [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71113[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer V of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71113] - * stratum album intermediale of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * stratum medullare intermedium colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71113[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * intermediate white layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:InWh] - * intermediate white layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:iw] - * stratum album centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001351] - * superior colliculus intermediate white layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCiw] + * intermediate white layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71113 ] + * intermediate white layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71113 ] + * lamina V of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris v [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71113, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer V of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71113 ] + * stratum album intermediale of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * stratum medullare intermedium colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71113, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * intermediate white layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:InWh ] + * intermediate white layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:iw ] + * stratum album centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001351 ] + * superior colliculus intermediate white layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCiw ] ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0007187.md b/md/UBERON/87/UBERON_0007187.md index 8b3cf408b5..1e715226e4 100644 --- a/md/UBERON/87/UBERON_0007187.md +++ b/md/UBERON/87/UBERON_0007187.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007187 * *Label* = pericardial parietal mesothelium - * *Definition* = A parietal mesothelium that is part of a pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A parietal mesothelium that is part of a pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesothelium of parietal pericardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19742] - * mesothelium of parietal serous pericardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19742] - * parietal serous pericardium mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19742] + * mesothelium of parietal pericardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19742 ] + * mesothelium of parietal serous pericardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19742 ] + * parietal serous pericardium mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19742 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parietal mesothelium](../../UBERON/40/UBERON_0007140.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pericardium](../../UBERON/07/UBERON_0002407.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0007287.md b/md/UBERON/87/UBERON_0007287.md index 4ec659eed9..20c1991fe1 100644 --- a/md/UBERON/87/UBERON_0007287.md +++ b/md/UBERON/87/UBERON_0007287.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007287 * *Label* = presumptive bulbus arteriosus - * *Definition* = A presumptive structure that has_potential_to_develop_into a bulbus arteriosus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a bulbus arteriosus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [bulbus arteriosus](../../UBERON/52/UBERON_0004152.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue that is part of the heart tube and will become the bulbus arteriosus.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0007687.md b/md/UBERON/87/UBERON_0007687.md index a2f32d9e03..5f43088d56 100644 --- a/md/UBERON/87/UBERON_0007687.md +++ b/md/UBERON/87/UBERON_0007687.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007687 * *Label* = kidney field - * *Definition* = region of the embryo into the area in which the kidney rudiment will develop. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072004[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * *Definition* = region of the embryo into the area in which the kidney rudiment will develop. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072004, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Synonyms - * kidney anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * kidney anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0008187.md b/md/UBERON/87/UBERON_0008187.md index c2de690fb5..c6b45b7389 100644 --- a/md/UBERON/87/UBERON_0008187.md +++ b/md/UBERON/87/UBERON_0008187.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0008287.md b/md/UBERON/87/UBERON_0008287.md index 9d707dd194..86524179c7 100644 --- a/md/UBERON/87/UBERON_0008287.md +++ b/md/UBERON/87/UBERON_0008287.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0008787.md b/md/UBERON/87/UBERON_0008787.md index dafaf8feba..03f51051ff 100644 --- a/md/UBERON/87/UBERON_0008787.md +++ b/md/UBERON/87/UBERON_0008787.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008787 * *Label* = fourth trochanter - * *Definition* = a knob-like feature on the medial side of the femur that serves as a muscle attachment. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fourth_trochanter] + * *Definition* = a knob-like feature on the medial side of the femur that serves as a muscle attachment. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fourth_trochanter ] * *Comment* = The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP]. ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0008887.md b/md/UBERON/87/UBERON_0008887.md index 6a164c107f..c25b611727 100644 --- a/md/UBERON/87/UBERON_0008887.md +++ b/md/UBERON/87/UBERON_0008887.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008887 * *Label* = rectal venous plexus - * *Definition* = The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectal_venous_plexus] + * *Definition* = The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectal_venous_plexus ] ## Synonyms - * haemorrhoidal plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectal_venous_plexus] - * hemorrhoidal plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectal_venous_plexus] - * plexus haemorrhoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectal_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plexus venosus rectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rectal_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * haemorrhoidal plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectal_venous_plexus ] + * hemorrhoidal plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectal_venous_plexus ] + * plexus haemorrhoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectal_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plexus venosus rectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rectal_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:18933 * SCTID:303051005 - * UMLS:C0226766 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hemorrhoidal_Plexus] + * UMLS:C0226766 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hemorrhoidal_Plexus ] * Wikipedia:Rectal_venous_plexus * http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png * ncithesaurus:Hemorrhoidal_Plexus @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [surrounds](../../RO/21/RO_0002221.md) some [rectum](../../UBERON/52/UBERON_0001052.md) and [venous plexus](../../UBERON/93/UBERON_0001593.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0008987.md b/md/UBERON/87/UBERON_0008987.md index 44060416b6..07316b49b6 100644 --- a/md/UBERON/87/UBERON_0008987.md +++ b/md/UBERON/87/UBERON_0008987.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008987 * *Label* = renal parenchyma - * *Definition* = The functional tissue of the kidney, consisting of the nephrons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003604] + * *Definition* = The functional tissue of the kidney, consisting of the nephrons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003604 ] ## Synonyms - * parenchyma of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15574] - * kidney parenchyma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003604] + * parenchyma of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15574 ] + * kidney parenchyma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003604 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parenchyma](../../UBERON/53/UBERON_0000353.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0009587.md b/md/UBERON/87/UBERON_0009587.md index 0210f47a19..fe48b21424 100644 --- a/md/UBERON/87/UBERON_0009587.md +++ b/md/UBERON/87/UBERON_0009587.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009587 * *Label* = mesenchyme of interdigital region between manual digits 2 and 3 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 2 and 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between fingers 2 and 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000849] + * interdigital region between fingers 2 and 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000849 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between manual digits 2 and 3](../../UBERON/29/UBERON_0006029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0009687.md b/md/UBERON/87/UBERON_0009687.md index bebe490566..2467df5f12 100644 --- a/md/UBERON/87/UBERON_0009687.md +++ b/md/UBERON/87/UBERON_0009687.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009687 * *Label* = middle cardiac vein - * *Definition* = The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cardiac_vein] + * *Definition* = The middle cardiac vein commences at the apex of the heart, ascends in the posterior longitudinal sulcus, and ends in the coronary sinus near its right extremity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cardiac_vein ] ## Synonyms - * lesser cardiac vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4713] - * posterior interventricular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4713] - * vena cardiaca media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cardiac_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lesser cardiac vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4713 ] + * posterior interventricular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4713 ] + * vena cardiaca media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cardiac_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EHDAA2:0004509 * FMA:4713 * SCTID:277729002 - * UMLS:C0226660 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Cardiac_Vein] + * UMLS:C0226660 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Cardiac_Vein ] * Wikipedia:Middle_cardiac_vein * ncithesaurus:Middle_Cardiac_Vein @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0009887.md b/md/UBERON/87/UBERON_0009887.md index 99ce660d23..bf06597a04 100644 --- a/md/UBERON/87/UBERON_0009887.md +++ b/md/UBERON/87/UBERON_0009887.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009887 * *Label* = interlobar vein - * *Definition* = The interlobar veins are veins of the renal circulation which drain the renal lobes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobar_veins] + * *Definition* = The interlobar veins are veins of the renal circulation which drain the renal lobes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobar_veins ] * *Comment* = FMA only has the set term ## Synonyms - * interlobar vein of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71631] - * venae interlobares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * interlobar veins of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71631] - * set of interlobar veins of kidney [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71631] - * venae interlobares renis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interlobar_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * interlobar vein of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71631 ] + * venae interlobares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * interlobar veins of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71631 ] + * set of interlobar veins of kidney [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71631 ] + * venae interlobares renis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interlobar_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0009987.md b/md/UBERON/87/UBERON_0009987.md index 749ebed268..d9bcadfb2f 100644 --- a/md/UBERON/87/UBERON_0009987.md +++ b/md/UBERON/87/UBERON_0009987.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009987 * *Label* = medial epicondyle of femur - * *Definition* = The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_femur] + * *Definition* = The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or 'tendinous insertion', of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_femur ] ## Synonyms - * epicondylus medialis (femur) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32864] - * epicondylus medialis femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_femur[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial femoral epicondyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_epicondyle_of_the_femur] + * epicondylus medialis (femur) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32864 ] + * epicondylus medialis femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_femur, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial femoral epicondyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_epicondyle_of_the_femur ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010187.md b/md/UBERON/87/UBERON_0010187.md index a9e3b17b2c..33f47862f4 100644 --- a/md/UBERON/87/UBERON_0010187.md +++ b/md/UBERON/87/UBERON_0010187.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010187 * *Label* = female urethral gland - * *Definition* = An urethral gland that is part of a female urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An urethral gland that is part of a female urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * female urethra gland * gland of female urethra - * urethral gland (female) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21444] + * urethral gland (female) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21444 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female urethra](../../UBERON/34/UBERON_0001334.md) and [urethral gland](../../UBERON/38/UBERON_0001338.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010287.md b/md/UBERON/87/UBERON_0010287.md index ea62833856..2a95313bf8 100644 --- a/md/UBERON/87/UBERON_0010287.md +++ b/md/UBERON/87/UBERON_0010287.md @@ -6,8 +6,8 @@ ## Synonyms - * facial nerve motor root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53419] - * seventh cranial nerve motor root [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53419] + * facial nerve motor root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53419 ] + * seventh cranial nerve motor root [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53419 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010387.md b/md/UBERON/87/UBERON_0010387.md index c87ed8188f..4537983cc3 100644 --- a/md/UBERON/87/UBERON_0010387.md +++ b/md/UBERON/87/UBERON_0010387.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010387 * *Label* = Peyer's patch T cell area - * *Definition* = the Peyer's patch area normally occupied by T lymphocytes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002392] + * *Definition* = the Peyer's patch area normally occupied by T lymphocytes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002392 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [T cell domain](../../UBERON/93/UBERON_0010393.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Peyer's patch](../../UBERON/11/UBERON_0001211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010687.md b/md/UBERON/87/UBERON_0010687.md index 892d4f6023..291b6224c9 100644 --- a/md/UBERON/87/UBERON_0010687.md +++ b/md/UBERON/87/UBERON_0010687.md @@ -6,10 +6,10 @@ ## Synonyms - * hind limb digit metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * hind limb digit metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metatarsal bone pre-cartilage condensation - * metatarsus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000948] - * foot digit metatarsal pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metatarsus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000948 ] + * foot digit metatarsal pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [pedal digit metatarsal endochondral element](../../UBERON/36/UBERON_0015036.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010887.md b/md/UBERON/87/UBERON_0010887.md index 8dc4183f96..0bfde18cb4 100644 --- a/md/UBERON/87/UBERON_0010887.md +++ b/md/UBERON/87/UBERON_0010887.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010887 * *Label* = tragus - * *Definition* = a small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tragus_(ear)] + * *Definition* = a small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tragus_(ear) ] * *Comment* = Taxon notes: The tragus is generally believed to play a role in vertical sound localization in bats ## Synonyms - * tragal part of pinna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60998] + * tragal part of pinna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60998 ] ## Cross-references * FMA:60998 * SCTID:362541003 - * UMLS:C0229312 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tragus] + * UMLS:C0229312 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tragus ] * Wikipedia:Tragus_(ear) * ncithesaurus:Tragus @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0010987.md b/md/UBERON/87/UBERON_0010987.md index b55eb71951..3485773a60 100644 --- a/md/UBERON/87/UBERON_0010987.md +++ b/md/UBERON/87/UBERON_0010987.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010987 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011087.md b/md/UBERON/87/UBERON_0011087.md index 33a85e5790..3a575a5572 100644 --- a/md/UBERON/87/UBERON_0011087.md +++ b/md/UBERON/87/UBERON_0011087.md @@ -6,9 +6,9 @@ ## Synonyms - * gill arch 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001610] - * visceral arch 7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001610] - * branchial arch 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001610] + * gill arch 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001610 ] + * visceral arch 7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001610 ] + * branchial arch 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001610 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[pharyngeal arch number](../../UBPROP/03/UBPROP_0000103.md)* = 7 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011187.md b/md/UBERON/87/UBERON_0011187.md index 075547e62f..2cf580a093 100644 --- a/md/UBERON/87/UBERON_0011187.md +++ b/md/UBERON/87/UBERON_0011187.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011187 * *Label* = greater tubercle of humerus - * *Definition* = The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_tubercle] + * *Definition* = The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives ('superior facet') insertion to the Supraspinatus the middle ('middle facet') to the Infraspinatus. the lowest one ('inferior facet'), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_tubercle ] ## Synonyms - * greater tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23390] - * greater tuberosity of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23390] - * tuberculum majus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuberculum majus humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_tubercle] - * greater tubercle of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_tubercle] - * greater tuberosity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_tubercle] + * greater tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23390 ] + * greater tuberosity of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23390 ] + * tuberculum majus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuberculum majus humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_tubercle ] + * greater tubercle of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_tubercle ] + * greater tuberosity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_tubercle ] ## Cross-references * FMA:23390 * SCTID:181934009 - * UMLS:C1512275 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Greater_Tuberosity] + * UMLS:C1512275 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Greater_Tuberosity ] * Wikipedia:Greater_tubercle * http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png * ncithesaurus:Greater_Tuberosity @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011287.md b/md/UBERON/87/UBERON_0011287.md index c7e5542e12..128fa834f0 100644 --- a/md/UBERON/87/UBERON_0011287.md +++ b/md/UBERON/87/UBERON_0011287.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011287 * *Label* = rostral organ - * *Definition* = A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelocanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rostral_organ] + * *Definition* = A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelocanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rostral_organ ] * *Comment* = classification as electric organ is putative ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011387.md b/md/UBERON/87/UBERON_0011387.md index ac8bf6b9ec..3d2115903c 100644 --- a/md/UBERON/87/UBERON_0011387.md +++ b/md/UBERON/87/UBERON_0011387.md @@ -6,14 +6,14 @@ ## Synonyms - * constrictor vulvae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002281] - * sphincter vaginae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] + * constrictor vulvae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002281 ] + * sphincter vaginae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] ## Cross-references * MA:0002281 * SCTID:244961006 - * UMLS:C1707495 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Constrictor_Vulvae] + * UMLS:C1707495 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Constrictor_Vulvae ] * ncithesaurus:Constrictor_Vulvae ## Subsets @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The constrictor muscle of the labia is weakly developed in the female dog which blends dorsally with the external anal sphincter muscle and attaches to the coccygeal fascia at the level of the first and second coccygeal vertebrae. It encircles the vulva and vestibule for a distance of about 1 cm. caudal to the area where the urethra enters the vestibule. Its action is to lift the labia dorsally to facilitate intromission of the penis into the vagina. The constrictor vestibuli and vulvae are homologous to the bulbospogiosus (bulbocavernosus) muscle in the male. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011587.md b/md/UBERON/87/UBERON_0011587.md index 2d2ad7e389..53df30a386 100644 --- a/md/UBERON/87/UBERON_0011587.md +++ b/md/UBERON/87/UBERON_0011587.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011587 * *Label* = pre-dentine - * *Definition* = Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000071[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000071, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * pre-dentine tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * predentin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3360947] - * predentine tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * pre-dentine tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * predentin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3360947 ] + * predentine tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0011687.md b/md/UBERON/87/UBERON_0011687.md index 5c6cd47af5..9e5921ef26 100644 --- a/md/UBERON/87/UBERON_0011687.md +++ b/md/UBERON/87/UBERON_0011687.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0012087.md b/md/UBERON/87/UBERON_0012087.md index 42c8b98804..b0db1f4fb1 100644 --- a/md/UBERON/87/UBERON_0012087.md +++ b/md/UBERON/87/UBERON_0012087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012087 * *Label* = air capillary of parabronchus - * *Definition* = An extension of the parabronchus, the walls of which are the site of gas exchange [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.vetmed.vt.edu/education/Curriculum/VM8054/Labs/Lab26/Examples/exairves.htm] + * *Definition* = An extension of the parabronchus, the walls of which are the site of gas exchange [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.vetmed.vt.edu/education/Curriculum/VM8054/Labs/Lab26/Examples/exairves.htm ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0012187.md b/md/UBERON/87/UBERON_0012187.md index 152cab977b..43193851db 100644 --- a/md/UBERON/87/UBERON_0012187.md +++ b/md/UBERON/87/UBERON_0012187.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012187 * *Label* = frontal artery - * *Definition* = The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supratrochlear_artery] + * *Definition* = The supratrochlear artery (or frontal artery), one of the terminal branches of the ophthalmic artery, branches off where the ophthalmic travels posterior to the trochlea. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supratrochlear_artery ] ## Synonyms - * supratrochlear artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50025] - * supratrochlear branch of ophthalmic artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50025] - * a supratrochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supratrochlear_artery] - * frontal arteries [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supratrochlear_artery] - * frontal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supratrochlear_artery] + * supratrochlear artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50025 ] + * supratrochlear branch of ophthalmic artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50025 ] + * a supratrochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supratrochlear_artery ] + * frontal arteries [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supratrochlear_artery ] + * frontal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supratrochlear_artery ] ## Cross-references * FMA:50025 * MA:0001960 * SCTID:369332005 - * UMLS:C1708100 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frontal_Artery] + * UMLS:C1708100 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frontal_Artery ] * Wikipedia:Supratrochlear_artery * ncithesaurus:Frontal_Artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012187 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0012287.md b/md/UBERON/87/UBERON_0012287.md index e5413bfd74..813d5bfdda 100644 --- a/md/UBERON/87/UBERON_0012287.md +++ b/md/UBERON/87/UBERON_0012287.md @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial sac](../../UBERON/99/UBERON_0007499.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Rathke's pouch](../../UBERON/56/UBERON_0005356.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0012487.md b/md/UBERON/87/UBERON_0012487.md index bd5acde4c4..cdd60a0da5 100644 --- a/md/UBERON/87/UBERON_0012487.md +++ b/md/UBERON/87/UBERON_0012487.md @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [sphincter muscle](../../UBERON/90/UBERON_0004590.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_8509 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0013487.md b/md/UBERON/87/UBERON_0013487.md index c5907a247a..4742b656f4 100644 --- a/md/UBERON/87/UBERON_0013487.md +++ b/md/UBERON/87/UBERON_0013487.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013487 * *Label* = epidermal ridge of digit - * *Definition* = The grooves in the outermost layer of skin on the palms of the hands and soles of the feet where sweat glands open. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Epidermal_Ridges] + * *Definition* = The grooves in the outermost layer of skin on the palms of the hands and soles of the feet where sweat glands open. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Epidermal_Ridges ] ## Synonyms * epidermal ridge * fingerprint * friction ridge - * plantar print [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:E05.256] + * plantar print [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:E05.256 ] ## Cross-references - * UMLS:C1516920 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epidermal_Ridges] + * UMLS:C1516920 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epidermal_Ridges ] * ncithesaurus:Epidermal_Ridges ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9443 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0013587.md b/md/UBERON/87/UBERON_0013587.md index 6ce5320533..29a048d3de 100644 --- a/md/UBERON/87/UBERON_0013587.md +++ b/md/UBERON/87/UBERON_0013587.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013587 * *Label* = fused metacarpal bones 3 and 4 - * *Definition* = An element formed from the fusion of metacarpal 3 and metacarpal 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0001-7920-5321] + * *Definition* = An element formed from the fusion of metacarpal 3 and metacarpal 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0001-7920-5321 ] * *Comment* = In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial. ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [metacarpal bone of digit 3](../../UBERON/47/UBERON_0003647.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metacarpal bone of digit 4](../../UBERON/48/UBERON_0003648.md) and [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013587 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0013687.md b/md/UBERON/87/UBERON_0013687.md index 4935c08c9b..4d1c6af20e 100644 --- a/md/UBERON/87/UBERON_0013687.md +++ b/md/UBERON/87/UBERON_0013687.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [skull](../../UBERON/29/UBERON_0003129.md) and [periosteum](../../UBERON/15/UBERON_0002515.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014287.md b/md/UBERON/87/UBERON_0014287.md index 8dd2805e63..4f65f49d22 100644 --- a/md/UBERON/87/UBERON_0014287.md +++ b/md/UBERON/87/UBERON_0014287.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014287 * *Label* = medial accessory olive - * *Definition* = Regional part of the inferior olivary complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100309] + * *Definition* = Regional part of the inferior olivary complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100309 ] ## Synonyms - * MAO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100309] - * medial accessory olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100309] - * inferior olivary complex medialaccessory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IOma] + * MAO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100309 ] + * medial accessory olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100309 ] + * inferior olivary complex medialaccessory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IOma ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014287 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014387.md b/md/UBERON/87/UBERON_0014387.md index 65eaf04620..eba88a9b58 100644 --- a/md/UBERON/87/UBERON_0014387.md +++ b/md/UBERON/87/UBERON_0014387.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014387 * *Label* = mesenchyme derived from neural crest - * *Definition* = Mesenchyme that develops_from the neural crest[Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that develops_from the neural crest[Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) and [mesenchyme](../../UBERON/04/UBERON_0003104.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014387 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014487.md b/md/UBERON/87/UBERON_0014487.md index a69db4800c..6feaba7907 100644 --- a/md/UBERON/87/UBERON_0014487.md +++ b/md/UBERON/87/UBERON_0014487.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014487 * *Label* = distal phalanx of digit 5 - * *Definition* = A distal phalanx that is part of a digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A distal phalanx that is part of a digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal phalanx](../../UBERON/00/UBERON_0004300.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 5](../../UBERON/52/UBERON_0006052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014487 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014687.md b/md/UBERON/87/UBERON_0014687.md index 165b4f06b6..3ff3120366 100644 --- a/md/UBERON/87/UBERON_0014687.md +++ b/md/UBERON/87/UBERON_0014687.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014687 * *Label* = temporal sulcus - * *Definition* = Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Temporal_Sulcus] + * *Definition* = Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Temporal_Sulcus ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [temporal lobe](../../UBERON/71/UBERON_0001871.md) and [sulcus](../../UBERON/93/UBERON_0000093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014687 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014787.md b/md/UBERON/87/UBERON_0014787.md index 62fe694c37..01ef9fcd3d 100644 --- a/md/UBERON/87/UBERON_0014787.md +++ b/md/UBERON/87/UBERON_0014787.md @@ -6,7 +6,7 @@ ## Synonyms - * extraembryonic umbilical vein left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000938] + * extraembryonic umbilical vein left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000938 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [extraembryonic umbilical vein](../../UBERON/86/UBERON_0014786.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014787 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0014887.md b/md/UBERON/87/UBERON_0014887.md index 71142e5f0c..930b22cc42 100644 --- a/md/UBERON/87/UBERON_0014887.md +++ b/md/UBERON/87/UBERON_0014887.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal epiphysis](../../UBERON/79/UBERON_0004379.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal phalanx](../../UBERON/00/UBERON_0004300.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014887 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_0015087.md b/md/UBERON/87/UBERON_0015087.md index 762bb8698c..73e9073776 100644 --- a/md/UBERON/87/UBERON_0015087.md +++ b/md/UBERON/87/UBERON_0015087.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015087 + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000187.md b/md/UBERON/87/UBERON_2000187.md index 2960d6e4fd..66a2d72fb8 100644 --- a/md/UBERON/87/UBERON_2000187.md +++ b/md/UBERON/87/UBERON_2000187.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000287.md b/md/UBERON/87/UBERON_2000287.md index d7ac6077b6..72ddc1a813 100644 --- a/md/UBERON/87/UBERON_2000287.md +++ b/md/UBERON/87/UBERON_2000287.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000387.md b/md/UBERON/87/UBERON_2000387.md index aa94774e4f..3199b8d489 100644 --- a/md/UBERON/87/UBERON_2000387.md +++ b/md/UBERON/87/UBERON_2000387.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011778 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_2000487.md b/md/UBERON/87/UBERON_2000487.md index a58cdc2729..1d0728c64c 100644 --- a/md/UBERON/87/UBERON_2000487.md +++ b/md/UBERON/87/UBERON_2000487.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_2000587.md b/md/UBERON/87/UBERON_2000587.md index 244b1351f7..37c7068b84 100644 --- a/md/UBERON/87/UBERON_2000587.md +++ b/md/UBERON/87/UBERON_2000587.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000587 * *Label* = sphenotic - * *Definition* = Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. ## Synonyms - * autosphenotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000587] - * sphenotics [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000587[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * autosphenotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000587 ] + * sphenotics [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000587, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -39,7 +39,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000687.md b/md/UBERON/87/UBERON_2000687.md index febaf79ac1..36af95e152 100644 --- a/md/UBERON/87/UBERON_2000687.md +++ b/md/UBERON/87/UBERON_2000687.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000887.md b/md/UBERON/87/UBERON_2000887.md index 6883ffc84c..e8186284c6 100644 --- a/md/UBERON/87/UBERON_2000887.md +++ b/md/UBERON/87/UBERON_2000887.md @@ -6,7 +6,7 @@ ## Synonyms - * floorplate neural rod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000887] + * floorplate neural rod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000887 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2000987.md b/md/UBERON/87/UBERON_2000987.md index de88d3335c..d1bbb551e5 100644 --- a/md/UBERON/87/UBERON_2000987.md +++ b/md/UBERON/87/UBERON_2000987.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000987 * *Label* = hypaxial region somite 3 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2001587.md b/md/UBERON/87/UBERON_2001587.md index 9056c451c5..1bb29db958 100644 --- a/md/UBERON/87/UBERON_2001587.md +++ b/md/UBERON/87/UBERON_2001587.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001587 * *Label* = pectoral fin proximal radial bone - * *Definition* = pectoral fin proximal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). ## Synonyms @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin proximal radial element](../../UBERON/87/UBERON_2101587.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2001687.md b/md/UBERON/87/UBERON_2001687.md index 4cfe2b3bda..332d808108 100644 --- a/md/UBERON/87/UBERON_2001687.md +++ b/md/UBERON/87/UBERON_2001687.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001687 * *Label* = interopercular-mandibular ligament - * *Definition* = Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * interopercular-retroarticular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001687] - * interoperculo-mandibular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001687] - * interoperculomandibular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001687] + * interopercular-retroarticular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001687 ] + * interoperculo-mandibular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001687 ] + * interoperculomandibular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001687 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2001787.md b/md/UBERON/87/UBERON_2001787.md index e5299c6bed..37b848fa44 100644 --- a/md/UBERON/87/UBERON_2001787.md +++ b/md/UBERON/87/UBERON_2001787.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001787 * *Label* = pectoral fin spine - * *Definition* = Pectoral-fin lepidotrichium 1 with mostly co-ossified and unsegmented hemitrichia that form a stiff and usually thick shaft and enlarged basal processes that moveably articulate with the pectoral girdle. The pectoral fin spine may also result from the fusion of several lepidotrichia that form a stiff shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral-fin lepidotrichium 1 with mostly co-ossified and unsegmented hemitrichia that form a stiff and usually thick shaft and enlarged basal processes that moveably articulate with the pectoral girdle. The pectoral fin spine may also result from the fusion of several lepidotrichia that form a stiff shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pectoral spine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001787] + * pectoral spine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001787 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2001887.md b/md/UBERON/87/UBERON_2001887.md index 180f427768..4818b33730 100644 --- a/md/UBERON/87/UBERON_2001887.md +++ b/md/UBERON/87/UBERON_2001887.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001887 * *Label* = neural spine 3 - * *Definition* = Neural spine that is associated with the third vertebra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Neural spine that is associated with the third vertebra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2001987.md b/md/UBERON/87/UBERON_2001987.md index bfa77fed9c..d43bbf3627 100644 --- a/md/UBERON/87/UBERON_2001987.md +++ b/md/UBERON/87/UBERON_2001987.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001987 * *Label* = centrum 5 - * *Definition* = Centrum that is part of vertebra 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2002087.md b/md/UBERON/87/UBERON_2002087.md index 08fb97e26a..a316969bcd 100644 --- a/md/UBERON/87/UBERON_2002087.md +++ b/md/UBERON/87/UBERON_2002087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002087 * *Label* = pectoral axillary process - * *Definition* = Pectoral axillary process is an elongate structure formed by one or more additional postcleithra or modified scales or a combination of both, that is firmly attached to a skin fold above the articular condyle of the uppermost pectoral fin ray or lepidotrichium 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral axillary process is an elongate structure formed by one or more additional postcleithra or modified scales or a combination of both, that is firmly attached to a skin fold above the articular condyle of the uppermost pectoral fin ray or lepidotrichium 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = For additional information see Arratia (1997). ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2005087.md b/md/UBERON/87/UBERON_2005087.md index 1177fdd18b..4312a4c152 100644 --- a/md/UBERON/87/UBERON_2005087.md +++ b/md/UBERON/87/UBERON_2005087.md @@ -6,7 +6,7 @@ ## Synonyms - * PV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005087] + * PV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005087 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2005187.md b/md/UBERON/87/UBERON_2005187.md index 82f9bc353f..76cf4262a2 100644 --- a/md/UBERON/87/UBERON_2005187.md +++ b/md/UBERON/87/UBERON_2005187.md @@ -6,7 +6,7 @@ ## Synonyms - * middle medial interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005187] + * middle medial interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005187 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_2101587.md b/md/UBERON/87/UBERON_2101587.md index 7385babd41..f9f8c3250e 100644 --- a/md/UBERON/87/UBERON_2101587.md +++ b/md/UBERON/87/UBERON_2101587.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101587 * *Label* = pectoral fin proximal radial element - * *Definition* = Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin radial element which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radial elements with the primary pectoral girdle (scapula and coracoid). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = Two to four flat or slightly rod-like proximal pectoral radial elements, bilaterally, can be found in teleosts. Pectoral proximal radial elements are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radial elements is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_2201587.md b/md/UBERON/87/UBERON_2201587.md index fe90634b2d..f34ef7d024 100644 --- a/md/UBERON/87/UBERON_2201587.md +++ b/md/UBERON/87/UBERON_2201587.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201587 * *Label* = pectoral fin proximal radial cartilage - * *Definition* = pectoral fin proximal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin proximal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin proximal radial element](../../UBERON/87/UBERON_2101587.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3000087.md b/md/UBERON/87/UBERON_3000087.md index 7d03a31fb4..75285b955c 100644 --- a/md/UBERON/87/UBERON_3000087.md +++ b/md/UBERON/87/UBERON_3000087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000087 * *Label* = cavum medius - * *Definition* = Small accessory cavity located between the cavum principale and cavum inferius. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Small accessory cavity located between the cavum principale and cavum inferius. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3000387.md b/md/UBERON/87/UBERON_3000387.md index c16b260f6c..1573b4dd8e 100644 --- a/md/UBERON/87/UBERON_3000387.md +++ b/md/UBERON/87/UBERON_3000387.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000387 * *Label* = subotic alae - * *Definition* = Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000387] + * processus lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000387 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3000587.md b/md/UBERON/87/UBERON_3000587.md index d532957997..1f85ae4226 100644 --- a/md/UBERON/87/UBERON_3000587.md +++ b/md/UBERON/87/UBERON_3000587.md @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0011636 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_3000687.md b/md/UBERON/87/UBERON_3000687.md index 26595761da..efbcbd0835 100644 --- a/md/UBERON/87/UBERON_3000687.md +++ b/md/UBERON/87/UBERON_3000687.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000687 * *Label* = processus confluens - * *Definition* = Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus alaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000687] + * processus alaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000687 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3000787.md b/md/UBERON/87/UBERON_3000787.md index 5a8f2def83..23233874f4 100644 --- a/md/UBERON/87/UBERON_3000787.md +++ b/md/UBERON/87/UBERON_3000787.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000787 * *Label* = collum antibrachii - * *Definition* = In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3010087.md b/md/UBERON/87/UBERON_3010087.md index 7a8b8025d4..8762a0523d 100644 --- a/md/UBERON/87/UBERON_3010087.md +++ b/md/UBERON/87/UBERON_3010087.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010087 * *Label* = M. tibialis anticus longus - * *Definition* = Originates on the ventro-lateral surface of the medial condyle of the femur. Its tendon extends in a groove over the knee in the lateral surface of the tibiofibular head, and penetrates the M. peroneus tendon. Insertion is by a lateral and medial head on the dorso-lateral surface of the fibulare and the medial border of the proximal end of the tibiale respectively. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the ventro-lateral surface of the medial condyle of the femur. Its tendon extends in a groove over the knee in the lateral surface of the tibiofibular head, and penetrates the M. peroneus tendon. Insertion is by a lateral and medial head on the dorso-lateral surface of the fibulare and the medial border of the proximal end of the tibiale respectively. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3010187.md b/md/UBERON/87/UBERON_3010187.md index de4f3e7681..5de6126aee 100644 --- a/md/UBERON/87/UBERON_3010187.md +++ b/md/UBERON/87/UBERON_3010187.md @@ -6,7 +6,7 @@ ## Synonyms - * thenar tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010187] + * thenar tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010187 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3010287.md b/md/UBERON/87/UBERON_3010287.md index 4baca7bb2c..982f1ee7f3 100644 --- a/md/UBERON/87/UBERON_3010287.md +++ b/md/UBERON/87/UBERON_3010287.md @@ -6,7 +6,7 @@ ## Synonyms - * ciliated cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010287] + * ciliated cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010287 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000064 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/87/UBERON_3010587.md b/md/UBERON/87/UBERON_3010587.md index 5581e530fa..a4e9d48c40 100644 --- a/md/UBERON/87/UBERON_3010587.md +++ b/md/UBERON/87/UBERON_3010587.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010587 * *Label* = hyoid arch neural crest - * *Definition* = Population of cranial neural crest that give rise to hyoid arch elements. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Population of cranial neural crest that give rise to hyoid arch elements. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_3010787.md b/md/UBERON/87/UBERON_3010787.md index c7e481d424..05b209ac45 100644 --- a/md/UBERON/87/UBERON_3010787.md +++ b/md/UBERON/87/UBERON_3010787.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_4000087.md b/md/UBERON/87/UBERON_4000087.md index 8dc8742b14..bc3efa8820 100644 --- a/md/UBERON/87/UBERON_4000087.md +++ b/md/UBERON/87/UBERON_4000087.md @@ -6,7 +6,7 @@ ## Synonyms - * cosmoid scale tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * cosmoid scale tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_4200087.md b/md/UBERON/87/UBERON_4200087.md index fc6a3788e5..4582601a33 100644 --- a/md/UBERON/87/UBERON_4200087.md +++ b/md/UBERON/87/UBERON_4200087.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/87/UBERON_4200187.md b/md/UBERON/87/UBERON_4200187.md index b6b8390f58..4003ce684e 100644 --- a/md/UBERON/87/UBERON_4200187.md +++ b/md/UBERON/87/UBERON_4200187.md @@ -27,7 +27,9 @@ formulas. Modified from Cooper and Dawson 2009 ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0000088.md b/md/UBERON/88/UBERON_0000088.md index 7b022ec0e7..2059927ce6 100644 --- a/md/UBERON/88/UBERON_0000088.md +++ b/md/UBERON/88/UBERON_0000088.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000088 * *Label* = trophoblast - * *Definition* = Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trophoblast] + * *Definition* = Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trophoblast ] * *Comment* = Development notes: The postimplantation derivatives of the trophectoderm, which make up most of the fetal part of the placenta[PMID:19829370] ## Synonyms - * massa cellularis externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trophoblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trophoblast layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005031] - * trophoblastus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trophoblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trophoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001079] + * massa cellularis externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trophoblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trophoblast layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005031 ] + * trophoblastus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trophoblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trophoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001079 ] ## Cross-references @@ -22,7 +22,7 @@ * GAID:1152 * MESH:A11.936 * SCTID:362839005 - * UMLS:C0041178 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trophoblast] + * UMLS:C0041178 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trophoblast ] * Wikipedia:Trophoblast * http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the mesectodermal cell layer arising from the trophectoderm that erodes the uterine mucosa and contributes to the formation of the placenta[MP] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = trophoblastic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0000388.md b/md/UBERON/88/UBERON_0000388.md index 1ac310c245..b658082fcd 100644 --- a/md/UBERON/88/UBERON_0000388.md +++ b/md/UBERON/88/UBERON_0000388.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000388 * *Label* = epiglottis - * *Definition* = a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epiglottis] + * *Definition* = a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epiglottis ] * *Comment* = Editor note: refine definition to better distinguish cartilage from the whole structure ## Synonyms @@ -19,7 +19,7 @@ * MESH:A02.165.507.411 * OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA * SCTID:245502004 - * UMLS:C0014540 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epiglottis] + * UMLS:C0014540 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epiglottis ] * Wikipedia:Epiglottis * http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png * ncithesaurus:Epiglottis @@ -44,8 +44,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epiglottal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0000488.md b/md/UBERON/88/UBERON_0000488.md index 8ffeb74e1b..17262f3e5a 100644 --- a/md/UBERON/88/UBERON_0000488.md +++ b/md/UBERON/88/UBERON_0000488.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000488 * *Label* = atypical epithelium - * *Definition* = Epithelium that consists of epithelial cells not arranged in one ore more layers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Epithelium that consists of epithelial cells not arranged in one ore more layers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of epithelial cells not arranged in one or more layers.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0000988.md b/md/UBERON/88/UBERON_0000988.md index c46853d662..e0752d59aa 100644 --- a/md/UBERON/88/UBERON_0000988.md +++ b/md/UBERON/88/UBERON_0000988.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000988 * *Label* = pons - * *Definition* = Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67943[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pons] + * *Definition* = Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67943, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pons ] * *Comment* = The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved ## Synonyms - * pons Varolii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pons_Varolii] + * pons Varolii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pons_Varolii ] * pons of Varolius - * pons cerebri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:547[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pons cerebri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:547, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,11 +32,11 @@ * MESH:A08.186.211.132.810.428.600 * MIAA:0000115 * NIF_GrossAnatomy:birnlex_733 - * NeuroNames:547 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_733] + * NeuroNames:547 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_733 ] * SCTID:279103004 - * UMLS:C0032639 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_733] - * UMLS:C0032639 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pons_Varolii] - * UMLS:C1280999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_733] + * UMLS:C0032639 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_733 ] + * UMLS:C0032639 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pons_Varolii ] + * UMLS:C1280999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_733 ] * VHOG:0001176 * Wikipedia:Pons * http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = During the embryonic development of birds and mammals, neuroblasts migrate from the cerebellum into the ventral part of the rhombencephalon and differentiate into pontine and other nuclei, which relay information from between the cerebrum and cerebellum, and a conspicuous band of transverse fibers. This region is known as the pons. A pons does not differentiate in reptiles and anamniotes (...).[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001088.md b/md/UBERON/88/UBERON_0001088.md index 74db5541ce..7d7616c596 100644 --- a/md/UBERON/88/UBERON_0001088.md +++ b/md/UBERON/88/UBERON_0001088.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001088 * *Label* = urine - * *Definition* = Excretion in liquid state processed by the kidney.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urine] + * *Definition* = Excretion in liquid state processed by the kidney.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urine ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -22,7 +22,7 @@ * MESH:A12.207.927 * MIAA:0000058 * OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA - * UMLS:C0042036 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Urine] + * UMLS:C0042036 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Urine ] * Wikipedia:Urine * galen:Urine * ncithesaurus:Urine @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001188.md b/md/UBERON/88/UBERON_0001188.md index 2047f89ac1..3b5c4a76bf 100644 --- a/md/UBERON/88/UBERON_0001188.md +++ b/md/UBERON/88/UBERON_0001188.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001188 * *Label* = right testicular artery - * *Definition* = A testicular artery that supplies a right testicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A testicular artery that supplies a right testicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:14759 * MA:0002042 - * UMLS:C0734076 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Right_Spermatic_Artery] + * UMLS:C0734076 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Right_Spermatic_Artery ] * ncithesaurus:Right_Spermatic_Artery ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [supplies](../../FMA/03/FMA_86003.md) some [right testicle](../../UBERON/34/UBERON_0004534.md) and [testicular artery](../../UBERON/87/UBERON_0001187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001288.md b/md/UBERON/88/UBERON_0001288.md index cd2189db31..7c218e25ed 100644 --- a/md/UBERON/88/UBERON_0001288.md +++ b/md/UBERON/88/UBERON_0001288.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001288 * *Label* = loop of Henle - * *Definition* = Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Loop_of_Henle] + * *Definition* = Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Loop_of_Henle ] * *Comment* = Note that the definitions of some kidney parts refer to Henle's loop, even in species where this may not be present. Requires review. ## Synonyms * Henle loop - * ansa nephroni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Loop_of_Henle] + * ansa nephroni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Loop_of_Henle ] * henle's loop ## Cross-references @@ -23,7 +23,7 @@ * MA:0001675 * MESH:A05.810.453.736.560.610 * SCTID:361335009 - * UMLS:C0023986 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Loop_of_Henle] + * UMLS:C0023986 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Loop_of_Henle ] * VHOG:0001270 * Wikipedia:Loop_of_Henle * http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [continuous_with](../../FMA/72/FMA_85972.md) some [distal convoluted tubule](../../UBERON/92/UBERON_0001292.md) and [continuous_with](../../FMA/72/FMA_85972.md) some [proximal convoluted tubule](../../UBERON/87/UBERON_0001287.md) and [region of nephron tubule](../../UBERON/85/UBERON_0007685.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A highly specialized segment of the mammalian kidney tubules, that dips into the medulla. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.648, see_Liem_KF][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001388.md b/md/UBERON/88/UBERON_0001388.md index 0b4a38f6cc..62cfe467f9 100644 --- a/md/UBERON/88/UBERON_0001388.md +++ b/md/UBERON/88/UBERON_0001388.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001388 * *Label* = gastrocnemius - * *Definition* = A muscle of the shank. In mammals it has two heads[Kardong]. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrocnemius_muscle] + * *Definition* = A muscle of the shank. In mammals it has two heads[Kardong]. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrocnemius_muscle ] ## Synonyms - * gastrocnemius muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000506] + * gastrocnemius muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000506 ] * m. gastrocnemius * m.gastrocnemius - * musculus gastrocnemius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastrocnemius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus gastrocnemius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastrocnemius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:22541 * MA:0002306 * SCTID:181700004 - * UMLS:C0242691 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastrocnemius_Muscle] + * UMLS:C0242691 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastrocnemius_Muscle ] * VHOG:0001193 * Wikipedia:Gastrocnemius_muscle * galen:Gastrocnemius @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The most prominent ventral muscle of the shank is the gastrocnemius, the 'calf' muscle. In mammals, it has two heads, resulting from the fusion of two different phylogenetic predecessors.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001488.md b/md/UBERON/88/UBERON_0001488.md index 7a71cbc2cc..f35c2f5cc3 100644 --- a/md/UBERON/88/UBERON_0001488.md +++ b/md/UBERON/88/UBERON_0001488.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001488 * *Label* = ankle joint - * *Definition* = A joint that connects the hindlimb autopod and zeugopod skeletons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.378.062[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A joint that connects the hindlimb autopod and zeugopod skeletons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.378.062, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: todo - accurately represent different types of ankle joint ## Synonyms - * gambrel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hock_(anatomy)] - * hock [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hock_(anatomy)] - * hock joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hock_(anatomy)] - * talotibial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] - * mortise joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004706] - * talocrural articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] - * talocrural joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ankle] + * gambrel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hock_(anatomy) ] + * hock [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hock_(anatomy) ] + * hock joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hock_(anatomy) ] + * talotibial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] + * mortise joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004706 ] + * talocrural articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] + * talocrural joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ankle ] ## Cross-references @@ -25,7 +25,7 @@ * MESH:A02.835.583.378.062 * OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA * SCTID:182212002 - * UMLS:C0003087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ankle_Joint] + * UMLS:C0003087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ankle_Joint ] * Wikipedia:Ankle * galen:AnkleJoint * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png @@ -41,21 +41,22 @@ * [hindlimb joint](../../UBERON/40/UBERON_0003840.md) * [synovial limb joint](../../UBERON/39/UBERON_0011139.md) * [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) * [connects](../../ts/core#connects.md) some [skeleton of pes](../../UBERON/45/UBERON_0001445.md) * [connects](../../ts/core#connects.md) some [hindlimb zeugopod skeleton](../../UBERON/20/UBERON_0010720.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [hindlimb zeugopod skeleton](../../UBERON/20/UBERON_0010720.md) and [connects](../../ts/core#connects.md) some [skeleton of pes](../../UBERON/45/UBERON_0001445.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001588.md b/md/UBERON/88/UBERON_0001588.md index 97f9da0e2d..04d5647375 100644 --- a/md/UBERON/88/UBERON_0001588.md +++ b/md/UBERON/88/UBERON_0001588.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001588 * *Label* = vertebral vein - * *Definition* = The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_vein] + * *Definition* = The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena vertebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vertebral_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena vertebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vertebral_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002262 * OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA * SCTID:303961000 - * UMLS:C0226560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Vein] + * UMLS:C0226560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Vein ] * Wikipedia:Vertebral_vein * http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray563.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray563.png/200px-Gray563.png @@ -40,8 +40,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein which collects blood from the muscles of the neck and drains into the internal jugular.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001688.md b/md/UBERON/88/UBERON_0001688.md index 2adee2879c..1157117bd0 100644 --- a/md/UBERON/88/UBERON_0001688.md +++ b/md/UBERON/88/UBERON_0001688.md @@ -1,14 +1,15 @@ -## Class : incus +## Class : incus bone * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001688 - * *Label* = incus - * *Definition* = The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incus] + * *Label* = incus bone + * *Definition* = The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incus ] ## Synonyms + * incus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001215 ] * incus bone - * quadrate - incus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000689] + * quadrate - incus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000689 ] ## Cross-references @@ -18,7 +19,7 @@ * MA:0001215 * MESH:A09.246.397.247.362 * SCTID:272649008 - * UMLS:C0021181 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Incus] + * UMLS:C0021181 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Incus ] * VHOG:0000689 * Wikipedia:Incus * http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png @@ -41,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [incus endochondral element](../../UBERON/17/UBERON_0015017.md) ## Other Logical Axioms @@ -50,8 +51,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001788.md b/md/UBERON/88/UBERON_0001788.md index 9bdaee4797..bdd7b8d337 100644 --- a/md/UBERON/88/UBERON_0001788.md +++ b/md/UBERON/88/UBERON_0001788.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001788 * *Label* = outer limiting layer of retina - * *Definition* = the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010236] + * *Definition* = the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010236 ] ## Synonyms * external limiting lamina of retina - * external limiting membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001331] + * external limiting membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001331 ] * external limiting membrane of retina - * outer limiting membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003224] + * outer limiting membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003224 ] * outer limiting membrane of retina * retina external limiting lamina - * retina outer limiting membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010236] + * retina outer limiting membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010236 ] * stratum limitans externum (retina) ## Cross-references @@ -22,7 +22,7 @@ * MA:0001309 * SCTID:280676008 * TAO:0001331 - * UMLS:C1518685 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Outer_Limiting_Membrane] + * UMLS:C1518685 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Outer_Limiting_Membrane ] * XAO:0003224 * ZFA:0001331 * ncithesaurus:Outer_Limiting_Membrane @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001888.md b/md/UBERON/88/UBERON_0001888.md index 3e9473f102..5150a22317 100644 --- a/md/UBERON/88/UBERON_0001888.md +++ b/md/UBERON/88/UBERON_0001888.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001888 * *Label* = lateral olfactory tract - * *Definition* = The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_olfactory_stria] + * *Definition* = The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_olfactory_stria ] * *Comment* = Editor notes: We follow neurolex and use 'tract' rather than 'stria' as the primary label. We make this a subtype of olfactory tract. Currently this groups teleost and mammalian structures by the same name, but this may be a false grouping. For example, in zebrafish, the difference between medial and lateral depends on the region of telencephalon (dorsal or ventral). Taxon notes: In mammals the fibers of the dorsal lateral olfactory tract either pass under the accessory olfactory formation, or they penetrate through it separating the internal granule cells from the output cells.[PMID:7437895] ## Synonyms - * tractus olfactorius lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000229[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * LOT [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral olfactory stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61971] - * lateral olfactory tract, body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:284] - * lateral olfactory tract. body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:lot] - * stria olfactoria lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_olfactory_stria[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tractus olfactorius lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000229, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * LOT [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral olfactory stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61971 ] + * lateral olfactory tract, body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:284 ] + * lateral olfactory tract. body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:lot ] + * stria olfactoria lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_olfactory_stria, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,10 +25,10 @@ * EV:0100175 * FMA:61971 * NIF_GrossAnatomy:birnlex_1559 - * NeuroNames:284 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1559] + * NeuroNames:284 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1559 ] * SCTID:369107001 * TAO:0000229 - * UMLS:C0152330 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1559] + * UMLS:C0152330 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1559 ] * Wikipedia:Lateral_olfactory_stria * ZFA:0000229 * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Telencephalic white matter which extends between the olfactory bulb and the ipsilateral dorsal telencephalon and carries secondary olfactory fibers. From Neuroanatomy of the Zebrafish Brain[ZFA:0000229]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0001988.md b/md/UBERON/88/UBERON_0001988.md index bca0bd1e43..a1233a1935 100644 --- a/md/UBERON/88/UBERON_0001988.md +++ b/md/UBERON/88/UBERON_0001988.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001988 * *Label* = feces - * *Definition* = Portion of semisolid bodily waste discharged through the anus[MW,modified] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Feces[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/dictionary/feces] + * *Definition* = Portion of semisolid bodily waste discharged through the anus[MW,modified] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Feces, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/dictionary/feces ] ## Synonyms @@ -13,30 +13,30 @@ * matires fcales@fr * merde@fr * partie de la merde@fr - * piece of shit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23285307] + * piece of shit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23285307 ] * porcin de mierda@en * portion of excrement * portion of faeces * portion of fecal material * portion of fecal matter * portion of feces - * portionem cacas [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * portionem cacas [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stool * teil der fkalien@de * excreta - * cow dung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cow_dung] - * cow pat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cow_dung] + * cow dung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cow_dung ] + * cow pat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cow_dung ] * dung - * fewmet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fewmet] - * frass [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frass] - * guano [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Guano] + * fewmet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fewmet ] + * frass [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frass ] + * guano [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Guano ] * portion of dung * portion of guano * portion of scat * scat - * spraint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spraint] + * spraint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spraint ] * droppings - * excrement [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000440] + * excrement [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000440 ] * ordure * spoor @@ -52,7 +52,7 @@ * MESH:A12.459 * MIAA:0000053 * OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA - * UMLS:C0015733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Feces] + * UMLS:C0015733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Feces ] * Wikipedia:Feces * galen:Feces * ncithesaurus:Feces @@ -76,8 +76,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Excretion in semisolid state processed by the intestine.[FMA[FMA:64183]] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = fecal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002088.md b/md/UBERON/88/UBERON_0002088.md index 0aaa64eb58..64a6763657 100644 --- a/md/UBERON/88/UBERON_0002088.md +++ b/md/UBERON/88/UBERON_0002088.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002088 * *Label* = lateral thoracic vein - * *Definition* = The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_thoracic_vein] + * *Definition* = The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the serratus ventralis muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_thoracic_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena thoracica lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_thoracic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena thoracica lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_thoracic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002188.md b/md/UBERON/88/UBERON_0002188.md index 5d47d0f31f..6afbe31cab 100644 --- a/md/UBERON/88/UBERON_0002188.md +++ b/md/UBERON/88/UBERON_0002188.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002188 * *Label* = respiratory bronchiole - * *Definition* = A bronchiole that is the first segment of the respiratory zone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Respiratory_bronchiole] + * *Definition* = A bronchiole that is the first segment of the respiratory zone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Respiratory_bronchiole ] * *Comment* = Taxon notes: mice have few or none of these structures, with the terminal bronchioles transitioning directly to the alveolary ducts[ISBN10:0123813611] ## Synonyms - * bronchiolus respiratorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Respiratory_bronchiole[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bronchiolus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7412[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bronchiolus respiratorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Respiratory_bronchiole, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bronchiolus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7412, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * MA:0000423 * OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA * SCTID:128517006 - * UMLS:C1261270 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Respiratory_Bronchiole] + * UMLS:C1261270 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Respiratory_Bronchiole ] * Wikipedia:Respiratory_bronchiole * http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png * http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002288.md b/md/UBERON/88/UBERON_0002288.md index fd22b452fc..10b404aca4 100644 --- a/md/UBERON/88/UBERON_0002288.md +++ b/md/UBERON/88/UBERON_0002288.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002288 * *Label* = choroid plexus of third ventricle - * *Definition* = A choroid plexus that is part of a third ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus that is part of a third ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * chorioid plexus of cerebral hemisphere of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * chorioid plexus of third ventricle - * choroid plexus third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001444] - * diencephalic choroid plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001444] - * third ventricle chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * choroid plexus third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001444 ] + * diencephalic choroid plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001444 ] + * third ventricle chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * third ventricle choroid plexus * 3rd ventricle choroid plexus @@ -26,7 +26,7 @@ * NeuroNames:452 * SCTID:61576002 * TAO:0001444 - * UMLS:C0152291 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle] + * UMLS:C0152291 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle ] * VHOG:0001374 * ZFA:0001444 * ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus](../../UBERON/86/UBERON_0001886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002488.md b/md/UBERON/88/UBERON_0002488.md index caac804d34..b8468b3cf2 100644 --- a/md/UBERON/88/UBERON_0002488.md +++ b/md/UBERON/88/UBERON_0002488.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002488 * *Label* = helix - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Helix] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Helix ] ## Synonyms @@ -19,7 +19,7 @@ * MA:0002793 * OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA * SCTID:279607004 - * UMLS:C0229304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Helix] + * UMLS:C0229304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Helix ] * Wikipedia:Helix * ncithesaurus:Helix @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002588.md b/md/UBERON/88/UBERON_0002588.md index 9090459d3d..73009b96f9 100644 --- a/md/UBERON/88/UBERON_0002588.md +++ b/md/UBERON/88/UBERON_0002588.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002588 * *Label* = decussation of superior cerebellar peduncle - * *Definition* = Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1089[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Decussation_of_superior_cerebellar_peduncle] + * *Definition* = Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1089, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Decussation_of_superior_cerebellar_peduncle ] ## Synonyms - * Wernekink's decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72455] - * decussatio pedunculorum cerebellarium superiorum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72455[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation of brachium conjunctivum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72455] - * decussation of superior cerebellar peduncles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72455] - * superior cerebellar peduncle decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72455] - * Descussation of the scp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dscp] - * decussatio brachii conjunctivi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:527[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussatio crurorum cerebello-cerebralium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:527[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation of the superior cerebellar peduncle (Wernekinck) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:527] - * decussation of the superior cerebellar peduncle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:527] + * Wernekink's decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72455 ] + * decussatio pedunculorum cerebellarium superiorum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72455, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation of brachium conjunctivum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72455 ] + * decussation of superior cerebellar peduncles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72455 ] + * superior cerebellar peduncle decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72455 ] + * Descussation of the scp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dscp ] + * decussatio brachii conjunctivi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:527, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussatio crurorum cerebello-cerebralium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:527, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation of the superior cerebellar peduncle (Wernekinck) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:527 ] + * decussation of the superior cerebellar peduncle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:527 ] ## Cross-references @@ -25,9 +25,9 @@ * BM:BCX * FMA:72455 * NIF_GrossAnatomy:birnlex_1089 - * NeuroNames:527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1089] + * NeuroNames:527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1089 ] * SCTID:369252009 - * UMLS:C0152374 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1089] + * UMLS:C0152374 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1089 ] * Wikipedia:Decussation_of_superior_cerebellar_peduncle * http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png @@ -52,8 +52,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003032 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002688.md b/md/UBERON/88/UBERON_0002688.md index 66c8489bbe..1cbc9f11dd 100644 --- a/md/UBERON/88/UBERON_0002688.md +++ b/md/UBERON/88/UBERON_0002688.md @@ -6,21 +6,21 @@ ## Synonyms - * anterior part of inferior parietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61897] + * anterior part of inferior parietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61897 ] * inferior parietal lobule (krieg) - * BA40 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann area 40 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Supramarginal_gyrus] - * gyrus supramarginalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:108[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * BA40 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann area 40 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Supramarginal_gyrus ] + * gyrus supramarginalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:108, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:SMG * FMA:61897 * NIF_GrossAnatomy:birnlex_1381 - * NeuroNames:108 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1381] + * NeuroNames:108 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1381 ] * SCTID:279185008 - * UMLS:C0228214 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1381] - * UMLS:C0228214 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Supramarginal_Gyrus] + * UMLS:C0228214 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1381 ] + * UMLS:C0228214 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Supramarginal_Gyrus ] * http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn,_lateral_-_Hauptgyri_beschriftet.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg/200px-Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg.png * ncithesaurus:Supramarginal_Gyrus @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002788.md b/md/UBERON/88/UBERON_0002788.md index 8efdd9610e..f5bf5194fc 100644 --- a/md/UBERON/88/UBERON_0002788.md +++ b/md/UBERON/88/UBERON_0002788.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002788 * *Label* = anterior nuclear group - * *Definition* = The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_nuclear_group] + * *Definition* = The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_nuclear_group ] ## Synonyms - * anterior nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62019] - * anterior nuclear group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62019] - * anterior nuclei of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62019] - * anterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62019] - * anterior thalamic group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000861] - * anterior thalamic nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62019] - * anterior thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1692] - * nuclei anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1692] - * nuclei anteriores (thalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1692] - * nuclei anteriores thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1692] - * nuclei thalamicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1692] - * ANG [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1692[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior group of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * anterior group of the dorsal thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * anterior nuclear group of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:302] - * anterior thalamic nuclear group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * anterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:302] - * dorsal thalamus anterior division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ATN] - * nucleus anterior thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:302[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus thalamicus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:302[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rostral thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000427] + * anterior nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62019 ] + * anterior nuclear group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62019 ] + * anterior nuclei of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62019 ] + * anterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62019 ] + * anterior thalamic group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000861 ] + * anterior thalamic nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62019 ] + * anterior thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1692 ] + * nuclei anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1692 ] + * nuclei anteriores (thalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1692 ] + * nuclei anteriores thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1692 ] + * nuclei thalamicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1692 ] + * ANG [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1692, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior group of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * anterior group of the dorsal thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * anterior nuclear group of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:302 ] + * anterior thalamic nuclear group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * anterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:302 ] + * dorsal thalamus anterior division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ATN ] + * nucleus anterior thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:302, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus thalamicus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:302, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rostral thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000427 ] ## Cross-references @@ -42,10 +42,10 @@ * MA:0000861 * MESH:A08.186.211.730.385.826.701.080 * NIF_GrossAnatomy:birnlex_1692 - * NeuroNames:302 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1692] + * NeuroNames:302 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1692 ] * SCTID:279124009 * TAO:0000427 - * UMLS:C0228316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1692] + * UMLS:C0228316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1692 ] * Wikipedia:Anterior_nuclear_group * ZFA:0000427 * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -68,8 +68,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002888.md b/md/UBERON/88/UBERON_0002888.md index e24e8fb0ba..0a5afa9c7f 100644 --- a/md/UBERON/88/UBERON_0002888.md +++ b/md/UBERON/88/UBERON_0002888.md @@ -6,23 +6,23 @@ ## Synonyms - * lateral basal nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2695] - * lateral basal nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68857] - * lateral division of basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2695] - * lateral division of the basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68857] - * lateral part of the basal amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247] - * lateral part of the basolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247] - * nucleus amygdalae basalis, pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis, pars lateralis magnocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis lateralis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:247[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral basal nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2695 ] + * lateral basal nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68857 ] + * lateral division of basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2695 ] + * lateral division of the basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68857 ] + * lateral part of the basal amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247 ] + * lateral part of the basolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247 ] + * nucleus amygdalae basalis, pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis, pars lateralis magnocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis lateralis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:247, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:BAL * FMA:68857 * NIF_GrossAnatomy:birnlex_2695 - * NeuroNames:247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2695] - * UMLS:C0694601 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2695] + * NeuroNames:247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2695 ] + * UMLS:C0694601 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2695 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0002988.md b/md/UBERON/88/UBERON_0002988.md index b88a418686..187ad72df1 100644 --- a/md/UBERON/88/UBERON_0002988.md +++ b/md/UBERON/88/UBERON_0002988.md @@ -6,8 +6,8 @@ ## Synonyms - * abductor indicis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37424] - * first dorsal interosseous of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37424] + * abductor indicis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37424 ] + * first dorsal interosseous of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37424 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003088.md b/md/UBERON/88/UBERON_0003088.md index 497c1e6731..0d11e6be4e 100644 --- a/md/UBERON/88/UBERON_0003088.md +++ b/md/UBERON/88/UBERON_0003088.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003088 * *Label* = caudal vein - * *Definition* = Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[ZFIN] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[ZFIN] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -42,8 +42,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: develops_from caudal vein plexus (TAO:0001286)[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of axial vasculature (TAO:0001073)[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003188.md b/md/UBERON/88/UBERON_0003188.md index 98fb60772e..cfaab990fe 100644 --- a/md/UBERON/88/UBERON_0003188.md +++ b/md/UBERON/88/UBERON_0003188.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004654 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000153 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003188 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_0003288.md b/md/UBERON/88/UBERON_0003288.md index 719c75360b..d9fd09b8da 100644 --- a/md/UBERON/88/UBERON_0003288.md +++ b/md/UBERON/88/UBERON_0003288.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003288 * *Label* = meninx of midbrain - * *Definition* = A meninx that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: consider changing genus to subdivision of meninx ## Synonyms - * meninges of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * midbrain meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * midbrain meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesencephalon meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000012[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * meninges of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * midbrain meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * midbrain meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesencephalon meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000012, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the midbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003388.md b/md/UBERON/88/UBERON_0003388.md index f245613fbc..9d102219d9 100644 --- a/md/UBERON/88/UBERON_0003388.md +++ b/md/UBERON/88/UBERON_0003388.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003388 * *Label* = mesothelium of pericardial cavity - * *Definition* = A mesothelium that is part of a pericardial cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a pericardial cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cavity of pericardial sac meso-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of pericardial sac mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meso-epithelium of cavity of pericardial sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meso-epithelium of pericardial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesothelium of cavity of pericardial sac [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pericardial cavity meso-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pericardial cavity mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cavity of pericardial sac meso-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of pericardial sac mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meso-epithelium of cavity of pericardial sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meso-epithelium of pericardial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesothelium of cavity of pericardial sac [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pericardial cavity meso-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pericardial cavity mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [pericardial cavity](../../UBERON/74/UBERON_0001074.md) and [mesothelium](../../UBERON/36/UBERON_0001136.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003488.md b/md/UBERON/88/UBERON_0003488.md index 0b592793d7..aea715fcf9 100644 --- a/md/UBERON/88/UBERON_0003488.md +++ b/md/UBERON/88/UBERON_0003488.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003488 * *Label* = abdominal mammary gland - * *Definition* = A lactiferous gland that is part of the abdominal region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lactiferous gland that is part of the abdominal region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Taxon notes: Female mice normally have five pairs of nipples and mammary glands, three in the thoracic and two in the abdominal region. (There is an additional abdominal pair in female rats.) http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml ## Synonyms - * abdomen lactiferous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdomen lobe of breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdomen lobe of mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * abdomen mammary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lactiferous gland of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of breast of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobe of mammary gland of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mammary gland of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * abdomen lactiferous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdomen lobe of breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdomen lobe of mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * abdomen mammary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lactiferous gland of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of breast of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobe of mammary gland of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mammary gland of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mammary gland](../../UBERON/11/UBERON_0001911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003588.md b/md/UBERON/88/UBERON_0003588.md index 877e3cc0bd..a6ba6996ce 100644 --- a/md/UBERON/88/UBERON_0003588.md +++ b/md/UBERON/88/UBERON_0003588.md @@ -3,40 +3,40 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003588 * *Label* = forelimb connective tissue - * *Definition* = A portion of connective tissue that is part of a forelimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a forelimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * anteriormost limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anteriormost limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anteriormost limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * superior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of anteriormost limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of fore limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of forelimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of superior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of upper extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * upper extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wing connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * anteriormost limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anteriormost limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anteriormost limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * superior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of anteriormost limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of fore limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of forelimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of superior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of upper extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * upper extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wing connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -52,15 +52,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003688.md b/md/UBERON/88/UBERON_0003688.md index 575ca24284..e92efae766 100644 --- a/md/UBERON/88/UBERON_0003688.md +++ b/md/UBERON/88/UBERON_0003688.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003688 * *Label* = omentum - * *Definition* = A fold of peritoneum originating at the stomach and supporting the viscera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Omentum] + * *Definition* = A fold of peritoneum originating at the stomach and supporting the viscera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Omentum ] ## Synonyms @@ -16,7 +16,7 @@ * GAID:23 * MESH:A01.047.025.600.573 * SCTID:362710002 - * UMLS:C0028977 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Omentum] + * UMLS:C0028977 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Omentum ] * galen:Omentum * ncithesaurus:Omentum @@ -38,8 +38,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = omental - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003888.md b/md/UBERON/88/UBERON_0003888.md index b5689d62d0..31514c193c 100644 --- a/md/UBERON/88/UBERON_0003888.md +++ b/md/UBERON/88/UBERON_0003888.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003888 * *Label* = extraembryonic coelom - * *Definition* = cavity between Heuser's membrane and the Trophoblast[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Extraembryonic_coelom] + * *Definition* = cavity between Heuser's membrane and the Trophoblast[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Extraembryonic_coelom ] ## Synonyms - * chorion cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000246] - * chorionic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000246[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/p/obo/mammalian-phenotype-requests/1454] - * exocoelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001671] - * extraembryonic celom [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63943] - * exocoelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001671] - * extra-embryonic coelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16081] - * extraembryonic coelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001671] + * chorion cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000246 ] + * chorionic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000246, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/p/obo/mammalian-phenotype-requests/1454 ] + * exocoelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001671 ] + * extraembryonic celom [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63943 ] + * exocoelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001671 ] + * extra-embryonic coelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16081 ] + * extraembryonic coelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001671 ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:63943 * SCTID:296586008 * SCTID:362843009 - * UMLS:C1517055 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Extraembryonic_Coelom] + * UMLS:C1517055 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Extraembryonic_Coelom ] * VHOG:0001671 * Wikipedia:Extraembryonic_coelom * ncithesaurus:Extraembryonic_Coelom @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0003988.md b/md/UBERON/88/UBERON_0003988.md index 41d0c5e6af..9e585d6966 100644 --- a/md/UBERON/88/UBERON_0003988.md +++ b/md/UBERON/88/UBERON_0003988.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003988 * *Label* = thymus corticomedullary boundary - * *Definition* = the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009543] + * *Definition* = the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009543 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [cortex of thymus](../../UBERON/23/UBERON_0002123.md) and [adjacent to](../../RO/20/RO_0002220.md) some [medulla of thymus](../../UBERON/24/UBERON_0002124.md) and [anatomical boundary](../../UBERON/15/UBERON_0000015.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004088.md b/md/UBERON/88/UBERON_0004088.md index d7cd4a5bab..6880937816 100644 --- a/md/UBERON/88/UBERON_0004088.md +++ b/md/UBERON/88/UBERON_0004088.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004088 * *Label* = ocular region - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000284] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000284 ] * *Comment* = TODO: consider the following: eyeball (eye proper) part_of eye (= eyeball+eyelid etc) part_of ocular region (= eye + adnexa such as eyebrow); note the FMA class is more narrow though, and is more like eye + muscles + vasculature // in HP covers eyelid, eyebrow. ## Synonyms - * content of orbital part of eye [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:260119] - * eye region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * orbital content [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:260119] + * content of orbital part of eye [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:260119 ] + * eye region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * orbital content [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:260119 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004188.md b/md/UBERON/88/UBERON_0004188.md index 76768cce13..ad752b0634 100644 --- a/md/UBERON/88/UBERON_0004188.md +++ b/md/UBERON/88/UBERON_0004188.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004188 * *Label* = glomerular epithelium - * *Definition* = The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072010] + * *Definition* = The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072010 ] * *Comment* = TODO - check - GO says outer, BTO says inner. Make this a superclass ## Synonyms @@ -11,8 +11,8 @@ * epithelium of glomerulus * epithelium of kidney glomerulus * epithelium of renal glomerulus - * kidney glomerular epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002847] - * glomerular epithelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001515] + * kidney glomerular epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002847 ] + * glomerular epithelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001515 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004288.md b/md/UBERON/88/UBERON_0004288.md index c2003c36ce..25c0b52a46 100644 --- a/md/UBERON/88/UBERON_0004288.md +++ b/md/UBERON/88/UBERON_0004288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004288 * *Label* = skeleton - * *Definition* = Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000026] + * *Definition* = Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000026 ] ## Synonyms @@ -48,9 +48,10 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = skeletal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004288 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000025 +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_0004388.md b/md/UBERON/88/UBERON_0004388.md index b0362d377f..767f0d1393 100644 --- a/md/UBERON/88/UBERON_0004388.md +++ b/md/UBERON/88/UBERON_0004388.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004388 * *Label* = epiphysis of fibula - * *Definition* = An epiphysis that is part of a fibula [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a fibula [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fibula epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33726] + * fibula epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33726 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fibula](../../UBERON/46/UBERON_0001446.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004488.md b/md/UBERON/88/UBERON_0004488.md index f826082b10..7df79cad2b 100644 --- a/md/UBERON/88/UBERON_0004488.md +++ b/md/UBERON/88/UBERON_0004488.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004488 * *Label* = musculature of pes - * *Definition* = Any collection of muscles that is part of a foot [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a foot [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50214] - * muscle group of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50214] - * musculature of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50214] - * set of muscles of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50214] + * foot musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50214 ] + * muscle group of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50214 ] + * musculature of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50214 ] + * set of muscles of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50214 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004688.md b/md/UBERON/88/UBERON_0004688.md index ebd6dbcaac..0cbc732c35 100644 --- a/md/UBERON/88/UBERON_0004688.md +++ b/md/UBERON/88/UBERON_0004688.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004688 * *Label* = costo-cervical trunk - * *Definition* = The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costocervical_trunk] + * *Definition* = The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costocervical_trunk ] ## Synonyms - * costocervical trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10636] - * trunk of costocervical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10636] - * truncus costocervicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costocervical_trunk[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * costocervical trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10636 ] + * trunk of costocervical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10636 ] + * truncus costocervicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costocervical_trunk, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004788.md b/md/UBERON/88/UBERON_0004788.md index 394a6883be..2fabeeb114 100644 --- a/md/UBERON/88/UBERON_0004788.md +++ b/md/UBERON/88/UBERON_0004788.md @@ -3,31 +3,31 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004788 * *Label* = kidney pelvis urothelium - * *Definition* = An urothelium that is part of a renal pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An urothelium that is part of a renal pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * kidney pelvis Uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * kidney pelvis transitional epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter Uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis of ureter urothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis Uroepithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis transitional epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal pelvis urothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transitional epithelium of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transitional epithelium of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:263264] - * uroepithelium of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uroepithelium of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * uroepithelium of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urothelium of kidney pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urothelium of pelvis of ureter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urothelium of renal pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * kidney pelvis Uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * kidney pelvis transitional epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter Uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis of ureter urothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis Uroepithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis transitional epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal pelvis urothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transitional epithelium of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transitional epithelium of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:263264 ] + * uroepithelium of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uroepithelium of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * uroepithelium of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urothelium of kidney pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urothelium of pelvis of ureter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urothelium of renal pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:263264 * MA:0002632 - * UMLS:C1709899 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Renal_Pelvis_Urothelium] + * UMLS:C1709899 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Renal_Pelvis_Urothelium ] * ncithesaurus:Renal_Pelvis_Urothelium ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [renal pelvis](../../UBERON/24/UBERON_0001224.md) and [urothelium](../../UBERON/65/UBERON_0000365.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004888.md b/md/UBERON/88/UBERON_0004888.md index 9a99186173..649004f2f4 100644 --- a/md/UBERON/88/UBERON_0004888.md +++ b/md/UBERON/88/UBERON_0004888.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004888 * *Label* = right lung hilus - * *Definition* = A lung hilus that is part of the right lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lung hilus that is part of the right lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * hilum of right lung - * hilus of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right lung hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * right pulmonary hilum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7330] - * right pulmonary hilus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hilus of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right lung hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * right pulmonary hilum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7330 ] + * right pulmonary hilus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lung hilus](../../UBERON/86/UBERON_0004886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung](../../UBERON/67/UBERON_0002167.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the right lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0004988.md b/md/UBERON/88/UBERON_0004988.md index 695a44bc86..db4f5b3ee0 100644 --- a/md/UBERON/88/UBERON_0004988.md +++ b/md/UBERON/88/UBERON_0004988.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004988 * *Label* = mucosa of cystic duct - * *Definition* = A mucosa that is part of a cystic duct [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a cystic duct [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cystic duct mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cystic duct mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cystic duct mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cystic duct organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cystic ductal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14690] - * mucosa of organ of cystic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of cystic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of cystic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cystic duct mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cystic duct mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cystic duct mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cystic duct organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cystic ductal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14690 ] + * mucosa of organ of cystic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of cystic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of cystic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cystic duct](../../UBERON/52/UBERON_0001152.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005088.md b/md/UBERON/88/UBERON_0005088.md index e18da69ac9..c7737020d3 100644 --- a/md/UBERON/88/UBERON_0005088.md +++ b/md/UBERON/88/UBERON_0005088.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005088 * *Label* = sebaceous gland placode - * *Definition* = A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060791] + * *Definition* = A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060791 ] * *Comment* = todo - add bud ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectodermal placode](../../UBERON/85/UBERON_0005085.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [sebaceous gland](../../UBERON/21/UBERON_0001821.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005188.md b/md/UBERON/88/UBERON_0005188.md index 6ef75ce7b3..f123674386 100644 --- a/md/UBERON/88/UBERON_0005188.md +++ b/md/UBERON/88/UBERON_0005188.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0004358 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005188 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_0005288.md b/md/UBERON/88/UBERON_0005288.md index c6043a1544..8fcea6e364 100644 --- a/md/UBERON/88/UBERON_0005288.md +++ b/md/UBERON/88/UBERON_0005288.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005288 * *Label* = tela choroidea of third ventricle - * *Definition* = Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tela_chorioidea_of_third_ventricle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tela_chorioidea_of_third_ventricle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * choroid membrane of third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78463] + * choroid membrane of third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78463 ] * tela chorioidea of third ventricle - * tela chorioidea third ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005159] + * tela chorioidea third ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005159 ] * tela choroidea third ventricle - * tela choroidea ventriculi tertii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78463[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tela choroidea ventriculi tertii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tela_chorioidea_of_third_ventricle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tela choroidea ventriculi tertii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78463, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tela choroidea ventriculi tertii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tela_chorioidea_of_third_ventricle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) and [tela choroidea](../../UBERON/83/UBERON_0005283.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tela chorioidea that lines the third ventricle.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005388.md b/md/UBERON/88/UBERON_0005388.md index 1ffd32c97b..1c30d1a388 100644 --- a/md/UBERON/88/UBERON_0005388.md +++ b/md/UBERON/88/UBERON_0005388.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005388 * *Label* = photoreceptor array - * *Definition* = An array of photoreceptors and any supporting cells found in an eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An array of photoreceptors and any supporting cells found in an eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005488.md b/md/UBERON/88/UBERON_0005488.md index 5139aa22e9..80c0f34249 100644 --- a/md/UBERON/88/UBERON_0005488.md +++ b/md/UBERON/88/UBERON_0005488.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005488 * *Label* = superior mesenteric plexus - * *Definition* = The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_plexus] + * *Definition* = The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_plexus ] ## Synonyms - * plexus mesentericus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6639[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * superior mesenteric nerve plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:6639] - * plexus mesentericus superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_mesenteric_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus mesentericus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6639, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * superior mesenteric nerve plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:6639 ] + * plexus mesentericus superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_mesenteric_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005588.md b/md/UBERON/88/UBERON_0005588.md index 4776b2a414..c13d9055c6 100644 --- a/md/UBERON/88/UBERON_0005588.md +++ b/md/UBERON/88/UBERON_0005588.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005588 * *Label* = rhombomere 8 floor plate - * *Definition* = A rhombomere floor plate that is part of a rhombomere 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere floor plate that is part of a rhombomere 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * floor plate r8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000765] - * floor plate rhombomere 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000765] - * floorplate r8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000765] + * floor plate r8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000765 ] + * floor plate rhombomere 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000765 ] + * floorplate r8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000765 ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 8](../../UBERON/27/UBERON_0005527.md) and [rhombomere floor plate](../../UBERON/00/UBERON_0005500.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005688.md b/md/UBERON/88/UBERON_0005688.md index 0851e2488d..2e18a8afc2 100644 --- a/md/UBERON/88/UBERON_0005688.md +++ b/md/UBERON/88/UBERON_0005688.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005688 * *Label* = lens vesicle cavity - * *Definition* = An anatomical cavity that is part of a lens vesicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a lens vesicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cavity of lens vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17164] + * cavity of lens vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17164 ] * cavity of lens - * lens cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000986] + * lens cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000986 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [lens vesicle](../../UBERON/26/UBERON_0005426.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The optic cup induces the overlying surface ectoderm first to thicken as a lens placode and then to invaginate and form a lens vesicle that differentiates into the lens.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005788.md b/md/UBERON/88/UBERON_0005788.md index 8b669f561d..a0a12f563a 100644 --- a/md/UBERON/88/UBERON_0005788.md +++ b/md/UBERON/88/UBERON_0005788.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005788 * *Label* = lamina rara interna - * *Definition* = Layer of the glomerular basement membrane adjacent to the glomerular capillary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Layer of the glomerular basement membrane adjacent to the glomerular capillary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * internal layer of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74277] - * lamina interna of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74277] + * internal layer of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74277 ] + * lamina interna of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74277 ] ## Cross-references * FMA:74277 * TAO:0005287 - * UMLS:C1517719 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lamina_Rara_Interna] + * UMLS:C1517719 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lamina_Rara_Interna ] * ZFA:0005287 * ncithesaurus:Lamina_Rara_Interna @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [acellular anatomical structure](../../UBERON/76/UBERON_0000476.md) and [adjacent to](../../RO/20/RO_0002220.md) some [glomerular capsule](../../UBERON/30/UBERON_0001230.md) and [part_of](../../BFO/50/BFO_0000050.md) some [glomerular basement membrane](../../UBERON/77/UBERON_0005777.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0005988.md b/md/UBERON/88/UBERON_0005988.md index ef7140fce2..5477b08d1c 100644 --- a/md/UBERON/88/UBERON_0005988.md +++ b/md/UBERON/88/UBERON_0005988.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005988 * *Label* = atrium myocardial trabecula - * *Definition* = the supporting bundles of muscular fibers lining the walls of the atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010581] + * *Definition* = the supporting bundles of muscular fibers lining the walls of the atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010581 ] ## Synonyms * atrial trabecula - * atrium myocardial trabeculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * atrium myocardial trabeculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * trabecula of atrium ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006088.md b/md/UBERON/88/UBERON_0006088.md index e08e820386..6e7ea63f23 100644 --- a/md/UBERON/88/UBERON_0006088.md +++ b/md/UBERON/88/UBERON_0006088.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006088 * *Label* = inferior parietal cortex - * *Definition* = Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1194] + * *Definition* = Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1194 ] ## Synonyms - * inferior parietal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1194] - * inferior parietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77536] - * inferior parietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1194] - * inferior parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:107] - * inferior portion of parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:107] - * interpeduncular nucleus lateral subnucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IPL] - * interpeduncular nucleus, lateral subnucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IPL] - * lobulus parietalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:107[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subparietal district [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:107] - * subparietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:107] + * inferior parietal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1194 ] + * inferior parietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77536 ] + * inferior parietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1194 ] + * inferior parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:107 ] + * inferior portion of parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:107 ] + * interpeduncular nucleus lateral subnucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IPL ] + * interpeduncular nucleus, lateral subnucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IPL ] + * lobulus parietalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:107, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subparietal district [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:107 ] + * subparietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:107 ] ## Cross-references @@ -24,9 +24,9 @@ * EFO:0001951 * FMA:77536 * NIF_GrossAnatomy:birnlex_1194 - * NeuroNames:107 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1194] + * NeuroNames:107 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1194 ] * SCTID:362336007 - * UMLS:C0152304 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1194] + * UMLS:C0152304 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1194 ] ## Subsets @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006288.md b/md/UBERON/88/UBERON_0006288.md index 8fe1fb3cfb..e02535c99f 100644 --- a/md/UBERON/88/UBERON_0006288.md +++ b/md/UBERON/88/UBERON_0006288.md @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [rib endochondral element](../../UBERON/19/UBERON_0015019.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006488.md b/md/UBERON/88/UBERON_0006488.md index 8ee4b8ba63..3805b88234 100644 --- a/md/UBERON/88/UBERON_0006488.md +++ b/md/UBERON/88/UBERON_0006488.md @@ -6,16 +6,16 @@ ## Synonyms - * C3 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71181] - * C3 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_744] - * third cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_744] + * C3 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71181 ] + * C3 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_744 ] + * third cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_744 ] ## Cross-references * FMA:71181 * NIF_GrossAnatomy:birnlex_744 * SCTID:278756003 - * UMLS:C0457853 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_744] + * UMLS:C0457853 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_744 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006588.md b/md/UBERON/88/UBERON_0006588.md index c108909ee7..ac6f978e7f 100644 --- a/md/UBERON/88/UBERON_0006588.md +++ b/md/UBERON/88/UBERON_0006588.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006588 * *Label* = round ligament of liver - * *Definition* = a degenerative string of tissue that exists in the free edge of the falciform ligament of the liver. Anatomically, the round ligament divides the left part of the liver into medial and lateral sections. The round ligament represents the remnant of the fetal left umbilical vein. The round ligament therefore only exists in mammals. Prenatally and for a month or two after birth, the left umbilical vein is patent, subsequently degenerating to fibrous tissue, the round ligament. The umbilical vein/round ligament inserts around the umbilicus and is an important landmark of the inner surface of the anterior abdominal wall[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_liver] + * *Definition* = a degenerative string of tissue that exists in the free edge of the falciform ligament of the liver. Anatomically, the round ligament divides the left part of the liver into medial and lateral sections. The round ligament represents the remnant of the fetal left umbilical vein. The round ligament therefore only exists in mammals. Prenatally and for a month or two after birth, the left umbilical vein is patent, subsequently degenerating to fibrous tissue, the round ligament. The umbilical vein/round ligament inserts around the umbilicus and is an important landmark of the inner surface of the anterior abdominal wall[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_liver ] ## Synonyms - * ligamentum teres hepatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14079[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ligamentum teres hepatitis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_liver] - * ligamentum teres of liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14079] - * ligamentum teres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_liver] + * ligamentum teres hepatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14079, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ligamentum teres hepatitis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_liver ] + * ligamentum teres of liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14079 ] + * ligamentum teres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_liver ] ## Cross-references * FMA:14079 * SCTID:262209009 - * UMLS:C0230247 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Round_Ligament_of_the_Liver] + * UMLS:C0230247 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Round_Ligament_of_the_Liver ] * Wikipedia:Round_ligament_of_liver * ncithesaurus:Round_Ligament_of_the_Liver @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006688.md b/md/UBERON/88/UBERON_0006688.md index 4dc90cc0c4..d4c6408275 100644 --- a/md/UBERON/88/UBERON_0006688.md +++ b/md/UBERON/88/UBERON_0006688.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006688 * *Label* = sublingual caruncle - * *Definition* = The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_caruncle] + * *Definition* = The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_caruncle ] ## Synonyms - * caruncula sublingualis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sublingual_caruncle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * caruncula sublingualis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sublingual_caruncle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0006788.md b/md/UBERON/88/UBERON_0006788.md index 12b05a1cf4..242f8d1917 100644 --- a/md/UBERON/88/UBERON_0006788.md +++ b/md/UBERON/88/UBERON_0006788.md @@ -6,15 +6,15 @@ ## Synonyms - * intermediate gray layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72409] - * intermediate grey layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72409] - * lamina IV of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris iv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72409[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer IV of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72409] - * stratum griseum intermediale of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * stratum griseum intermedium colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72409[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * intermediate grey layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:igr] - * stratum griseum centrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001350] + * intermediate gray layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72409 ] + * intermediate grey layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72409 ] + * lamina IV of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris iv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72409, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer IV of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72409 ] + * stratum griseum intermediale of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * stratum griseum intermedium colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72409, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * intermediate grey layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:igr ] + * stratum griseum centrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001350 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0007188.md b/md/UBERON/88/UBERON_0007188.md index ad91ae7181..6826957a89 100644 --- a/md/UBERON/88/UBERON_0007188.md +++ b/md/UBERON/88/UBERON_0007188.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007188 * *Label* = mesothelium of serous pericardium - * *Definition* = A mesothelium that is part of a serous pericardium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a serous pericardium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mesothelium of pericardium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18149] - * pericardial mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18149] - * serous pericardium mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18149] + * mesothelium of pericardium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18149 ] + * pericardial mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18149 ] + * serous pericardium mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18149 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [serous pericardium](../../UBERON/57/UBERON_0002357.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0007288.md b/md/UBERON/88/UBERON_0007288.md index 9dbd94a043..a0da0de6a4 100644 --- a/md/UBERON/88/UBERON_0007288.md +++ b/md/UBERON/88/UBERON_0007288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007288 * *Label* = presumptive forebrain midbrain boundary - * *Definition* = A presumptive structure that has_potential_to_develop_into a forebrain-midbrain boundary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a forebrain-midbrain boundary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [forebrain-midbrain boundary](../../UBERON/75/UBERON_0005075.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0007688.md b/md/UBERON/88/UBERON_0007688.md index f3a1ec01ff..a4df175323 100644 --- a/md/UBERON/88/UBERON_0007688.md +++ b/md/UBERON/88/UBERON_0007688.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007688 * *Label* = anlage - * *Definition* = Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005426[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + JB:DEF[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anlage_(biology)] + * *Definition* = Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005426, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = JB:DEF, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anlage_(biology) ] ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008188.md b/md/UBERON/88/UBERON_0008188.md index 47b96ea57a..1812fe7636 100644 --- a/md/UBERON/88/UBERON_0008188.md +++ b/md/UBERON/88/UBERON_0008188.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008188 * *Label* = tendon of biceps brachii - * *Definition* = A tendon that attaches_to a biceps brachii. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tendon that attaches_to a biceps brachii. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * biceps brachii tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38152] + * biceps brachii tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38152 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [biceps brachii](../../UBERON/07/UBERON_0001507.md) and [tendon](../../UBERON/43/UBERON_0000043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008288.md b/md/UBERON/88/UBERON_0008288.md index 3f777f034b..874f5e978c 100644 --- a/md/UBERON/88/UBERON_0008288.md +++ b/md/UBERON/88/UBERON_0008288.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008488.md b/md/UBERON/88/UBERON_0008488.md index 57d69ec208..6bf3e875db 100644 --- a/md/UBERON/88/UBERON_0008488.md +++ b/md/UBERON/88/UBERON_0008488.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008488 * *Label* = cremaster muscle - * *Definition* = A thin layer of skeletal muscle that envelops the spermatic cord and testis of most male mammals in a series of loops; it is a continuation of the obliquus internus, arising from the inguinal ligament and inserting into the crest of the pubis and into the sheath of the rectus abdominis; it is innervated by the genital branch of the genitofemoral nerve and functions to draw the testis up toward the superficial inguinal ring in response to cold or to stimulation of the nerve; [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011833[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cremaster_muscle] + * *Definition* = A thin layer of skeletal muscle that envelops the spermatic cord and testis of most male mammals in a series of loops; it is a continuation of the obliquus internus, arising from the inguinal ligament and inserting into the crest of the pubis and into the sheath of the rectus abdominis; it is innervated by the genital branch of the genitofemoral nerve and functions to draw the testis up toward the superficial inguinal ring in response to cold or to stimulation of the nerve; [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011833, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cremaster_muscle ] * *Comment* = Usage notes: in females it is represented by only a few muscle loops that envelop the round ligament of the uterus. This class represents the male structure ## Synonyms - * cremaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21531] - * muscle of Riolan (cremaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21531] - * musculus cremaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cremaster muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cremaster_muscle] - * cremasteric muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cremaster_muscle] + * cremaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21531 ] + * muscle of Riolan (cremaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21531 ] + * musculus cremaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cremaster muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cremaster_muscle ] + * cremasteric muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cremaster_muscle ] * muscle of Riolan - * musculus cremaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus cremaster [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cremaster_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus cremaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus cremaster [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cremaster_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * EMAPA:31250 * FMA:21531 * SCTID:244948006 - * UMLS:C0224377 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cremaster_Muscle] + * UMLS:C0224377 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cremaster_Muscle ] * Wikipedia:Cremaster_muscle * http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png * ncithesaurus:Cremaster_Muscle @@ -48,8 +48,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cremasteric - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008588.md b/md/UBERON/88/UBERON_0008588.md index fff6dc1b5f..99eafac974 100644 --- a/md/UBERON/88/UBERON_0008588.md +++ b/md/UBERON/88/UBERON_0008588.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008588 * *Label* = procerus - * *Definition* = The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle] + * *Definition* = The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle ] ## Synonyms - * depressor glabellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * depressor glabellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle] - * musculus procerus glabellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * procerus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle] - * pyramidalis nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyramidalis nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Procerus_muscle] + * depressor glabellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle ] + * depressor glabellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus procerus glabellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * procerus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle ] + * pyramidalis nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle ] + * pyramidalis nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Procerus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008788.md b/md/UBERON/88/UBERON_0008788.md index a6219d89aa..d1434bf686 100644 --- a/md/UBERON/88/UBERON_0008788.md +++ b/md/UBERON/88/UBERON_0008788.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008788 * *Label* = posterior cranial fossa - * *Definition* = The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A01.456.830.200[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cranial_fossa] + * *Definition* = The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A01.456.830.200, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cranial_fossa ] ## Synonyms - * posterior fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Posterior] - * fossa cranii posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_cranial_fossa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Posterior ] + * fossa cranii posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_cranial_fossa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * FMA:54368 * GAID:85 * MESH:A01.456.830.200 - * UMLS:C0010265 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Fossa] + * UMLS:C0010265 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Fossa ] * Wikipedia:Posterior_cranial_fossa * http://upload.wikimedia.org/wikipedia/commons/c/c2/Posterior_fossa.png * ncithesaurus:Posterior_Fossa @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0008888.md b/md/UBERON/88/UBERON_0008888.md index 00c3585826..0168fc4552 100644 --- a/md/UBERON/88/UBERON_0008888.md +++ b/md/UBERON/88/UBERON_0008888.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008888 * *Label* = vesical venous plexus - * *Definition* = The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesical_venous_plexus] + * *Definition* = The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesical_venous_plexus ] ## Synonyms - * plexus venosus vesicalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vesical_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus venosus vesicalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vesical_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0009588.md b/md/UBERON/88/UBERON_0009588.md index bd7e81074d..9274f439b4 100644 --- a/md/UBERON/88/UBERON_0009588.md +++ b/md/UBERON/88/UBERON_0009588.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009588 * *Label* = mesenchyme of interdigital region between manual digits 3 and 4 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between fingers 3 and 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000852] + * interdigital region between fingers 3 and 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000852 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between manual digits 3 and 4](../../UBERON/32/UBERON_0006032.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0009688.md b/md/UBERON/88/UBERON_0009688.md index d09321f19f..f6f101fa09 100644 --- a/md/UBERON/88/UBERON_0009688.md +++ b/md/UBERON/88/UBERON_0009688.md @@ -6,14 +6,14 @@ ## Synonyms - * posterior inferior cerebellar artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000660] + * posterior inferior cerebellar artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000660 ] ## Cross-references * EHDAA2:0000660 * FMA:50518 * SCTID:244212001 - * UMLS:C0149573 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Inferior_Cerebellar_Artery] + * UMLS:C0149573 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Inferior_Cerebellar_Artery ] * ncithesaurus:Posterior_Inferior_Cerebellar_Artery ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0009888.md b/md/UBERON/88/UBERON_0009888.md index 50c865a085..367f79af11 100644 --- a/md/UBERON/88/UBERON_0009888.md +++ b/md/UBERON/88/UBERON_0009888.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009888 * *Label* = Koller's sickle - * *Definition* = a local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:9693154[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Koller's_sickle] + * *Definition* = a local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:9693154, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Koller's_sickle ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0009988.md b/md/UBERON/88/UBERON_0009988.md index a1c2e35211..105681b9ff 100644 --- a/md/UBERON/88/UBERON_0009988.md +++ b/md/UBERON/88/UBERON_0009988.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009988 * *Label* = condyle of humerus - * *Definition* = the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=19715] + * *Definition* = the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=19715 ] ## Synonyms * condylus humeri - * humeral condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23377] + * humeral condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23377 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [condyle](../../UBERON/79/UBERON_0009979.md) and [part_of](../../BFO/50/BFO_0000050.md) some [distal epiphysis of humerus](../../UBERON/04/UBERON_0004404.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0010188.md b/md/UBERON/88/UBERON_0010188.md index 37c2164598..1cdc23806c 100644 --- a/md/UBERON/88/UBERON_0010188.md +++ b/md/UBERON/88/UBERON_0010188.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010188 * *Label* = protuberance - * *Definition* = A roughly circular bulge in a surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003250] + * *Definition* = A roughly circular bulge in a surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003250 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0010288.md b/md/UBERON/88/UBERON_0010288.md index 44c0fd0279..fbf3f145ae 100644 --- a/md/UBERON/88/UBERON_0010288.md +++ b/md/UBERON/88/UBERON_0010288.md @@ -25,9 +25,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0001896 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010288 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_0010388.md b/md/UBERON/88/UBERON_0010388.md index f87317dc83..2b8c07a600 100644 --- a/md/UBERON/88/UBERON_0010388.md +++ b/md/UBERON/88/UBERON_0010388.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010388 * *Label* = proximal segment of rib - * *Definition* = The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0000152[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15906248] + * *Definition* = The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0000152, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15906248 ] * *Comment* = The proximal rib derives from the caudal half of somite[PMID:15906248] ## Synonyms - * proximal part of rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:15906248] - * proximal rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001400] + * proximal part of rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:15906248 ] + * proximal rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001400 ] * costal part of rib * vertebral part of rib @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0010688.md b/md/UBERON/88/UBERON_0010688.md index 7f74b69425..a0de6a24dd 100644 --- a/md/UBERON/88/UBERON_0010688.md +++ b/md/UBERON/88/UBERON_0010688.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010688 * *Label* = skeleton of manual acropodium - * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005029[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the manual autopodium - i.e. the bones of the hands or their cartilaginous precursors[VSAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005029, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -12,13 +12,13 @@ * fore acropodium skeleton * hand digit skeleton * manual digit skeleton - * manual phalanges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005029[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * phalanges of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71337] + * manual phalanges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005029, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * phalanges of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71337 ] * phalanges of manus * set of manual phalanges - * set of phalanges of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71337] + * set of phalanges of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71337 ] * set of phalanges of manus - * anterior acropodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005029[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * anterior acropodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005029, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acropodial skeleton](../../UBERON/43/UBERON_0010543.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0010888.md b/md/UBERON/88/UBERON_0010888.md index 8cf8df46d0..b9508ccd3e 100644 --- a/md/UBERON/88/UBERON_0010888.md +++ b/md/UBERON/88/UBERON_0010888.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010888 * *Label* = obsolete seta - * *Definition* = A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004212] + * *Definition* = A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004212 ] * *Comment* = Obsoleted as the term 'seta' refers to a variety of different structures. For insect chaetae, consider the arthropod anatomy ontology. ## Synonyms - * bristle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004212] - * chaeta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000152] - * sensory bristle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000152] + * bristle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004212 ] + * chaeta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000152 ] + * sensory bristle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000152 ] ## Cross-references @@ -32,9 +32,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = BTO:0004212 * *[consider](../../er/oboInOwl#consider.md)* = INSECT:0000114 * *[consider](../../er/oboInOwl#consider.md)* = MIAA:0000152 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010888 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_0010988.md b/md/UBERON/88/UBERON_0010988.md index adb9cd9525..fe0fa32b42 100644 --- a/md/UBERON/88/UBERON_0010988.md +++ b/md/UBERON/88/UBERON_0010988.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010988 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011088.md b/md/UBERON/88/UBERON_0011088.md index 8444e46658..21e26e567a 100644 --- a/md/UBERON/88/UBERON_0011088.md +++ b/md/UBERON/88/UBERON_0011088.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011088 * *Label* = ligament of knee joint - * *Definition* = A ligament that is part of a knee joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A ligament that is part of a knee joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * knee joint ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:44580] + * knee joint ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:44580 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ligament](../../UBERON/11/UBERON_0000211.md) and [part_of](../../BFO/50/BFO_0000050.md) some [knee joint](../../UBERON/85/UBERON_0001485.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011188.md b/md/UBERON/88/UBERON_0011188.md index c1a0e89c7f..9a299d7e10 100644 --- a/md/UBERON/88/UBERON_0011188.md +++ b/md/UBERON/88/UBERON_0011188.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011188 * *Label* = lesser tubercle of humerus - * *Definition* = The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_tubercle] + * *Definition* = The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_tubercle ] ## Synonyms - * lesser tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23393] - * lesser tuberosity of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23393] - * tuberculum minus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lesser tubercle of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_tubercle] - * lesser tubercle of the humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_tubercle] + * lesser tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23393 ] + * lesser tuberosity of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23393 ] + * tuberculum minus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lesser tubercle of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_tubercle ] + * lesser tubercle of the humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_tubercle ] ## Cross-references * FMA:23393 * SCTID:181935005 - * UMLS:C0223687 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lesser_Tuberosity] + * UMLS:C0223687 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lesser_Tuberosity ] * Wikipedia:Lesser_tubercle * http://upload.wikimedia.org/wikipedia/commons/3/31/Tuberculumminushumeri.png * ncithesaurus:Lesser_Tuberosity @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011288.md b/md/UBERON/88/UBERON_0011288.md index 1c71da5158..cc0df9890f 100644 --- a/md/UBERON/88/UBERON_0011288.md +++ b/md/UBERON/88/UBERON_0011288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011288 * *Label* = stomochord - * *Definition* = A flexible, hollow tube that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity. Their walls are composed primarily of epithelial cells, but ciliated and glandular cells are also present [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stomochord] + * *Definition* = A flexible, hollow tube that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity. Their walls are composed primarily of epithelial cells, but ciliated and glandular cells are also present [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stomochord ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011388.md b/md/UBERON/88/UBERON_0011388.md index dc76655f67..c088e4f5d3 100644 --- a/md/UBERON/88/UBERON_0011388.md +++ b/md/UBERON/88/UBERON_0011388.md @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bulbospongiosus muscle](../../UBERON/89/UBERON_0011389.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0011387 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011588.md b/md/UBERON/88/UBERON_0011588.md index 07ff7b439e..04624f3d13 100644 --- a/md/UBERON/88/UBERON_0011588.md +++ b/md/UBERON/88/UBERON_0011588.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011588 * *Label* = pre-enamel - * *Definition* = Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000066[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000066, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * pre-enamel tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * preenamel tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * pre-enamel tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * preenamel tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0011688.md b/md/UBERON/88/UBERON_0011688.md index ed2dc5d15d..a9d2c2c2a4 100644 --- a/md/UBERON/88/UBERON_0011688.md +++ b/md/UBERON/88/UBERON_0011688.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011688 * *Label* = pre-enameloid - * *Definition* = Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000114[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000114, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * non-mineralized enameloid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * non-mineralized enameloid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0012088.md b/md/UBERON/88/UBERON_0012088.md index 03f5be6fd8..8c21563c43 100644 --- a/md/UBERON/88/UBERON_0012088.md +++ b/md/UBERON/88/UBERON_0012088.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0012288.md b/md/UBERON/88/UBERON_0012288.md index 64e2d1dbf0..3db6ec392c 100644 --- a/md/UBERON/88/UBERON_0012288.md +++ b/md/UBERON/88/UBERON_0012288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012288 * *Label* = centroquartal bone - * *Definition* = A tarsal bone that is formed from the fusion of the central and 4th tarsal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:skansa] + * *Definition* = A tarsal bone that is formed from the fusion of the central and 4th tarsal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:skansa ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [distal tarsal bone 4](../../UBERON/37/UBERON_0010737.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [navicular bone of pes](../../UBERON/51/UBERON_0001451.md) and [tarsal bone](../../UBERON/47/UBERON_0001447.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0012488.md b/md/UBERON/88/UBERON_0012488.md index 8134de287d..873c792dce 100644 --- a/md/UBERON/88/UBERON_0012488.md +++ b/md/UBERON/88/UBERON_0012488.md @@ -6,10 +6,10 @@ ## Synonyms - * duodenal muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14944] - * muscularis externa of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14944] - * muscularis propria of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * smooth muscle of duodenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * duodenal muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14944 ] + * muscularis externa of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14944 ] + * muscularis propria of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * smooth muscle of duodenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0013188.md b/md/UBERON/88/UBERON_0013188.md index 547a12dddd..5e51ffe214 100644 --- a/md/UBERON/88/UBERON_0013188.md +++ b/md/UBERON/88/UBERON_0013188.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013188 * *Label* = monkey lips dorsal bursa complex - * *Definition* = A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBM10:0120885522] + * *Definition* = A structure consisting of a pair of anterior and posterior dorsal bursae in which a pair of phonic lips are embedded, along with the bursal cartilage and a blowhole ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBM10:0120885522 ] * *Comment* = Taxon notes: all odontocetes except sperm whales posses two bilaterally placed MLDB complexes, placed just below the floor of the vestibular sac ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013188 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0013488.md b/md/UBERON/88/UBERON_0013488.md index 0a24117139..cda70ce76b 100644 --- a/md/UBERON/88/UBERON_0013488.md +++ b/md/UBERON/88/UBERON_0013488.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013488 * *Label* = panniculus adiposus - * *Definition* = The panniculus adiposus is the fatty layer of the subcutaneous tissues, superficial to a deeper vestigial layer of muscle, the panniculus carnosus. An example is the Fascia of Camper. Another example is the superficial cervical fascia[WP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Panniculus_adiposus] + * *Definition* = The panniculus adiposus is the fatty layer of the subcutaneous tissues, superficial to a deeper vestigial layer of muscle, the panniculus carnosus. An example is the Fascia of Camper. Another example is the superficial cervical fascia[WP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Panniculus_adiposus ] * *Comment* = It includes structures that are considered fascia by some sources but not by others. Consider merging with subcutaneous adipose tissue ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0013588.md b/md/UBERON/88/UBERON_0013588.md index 772a6df96e..77c48e1b2a 100644 --- a/md/UBERON/88/UBERON_0013588.md +++ b/md/UBERON/88/UBERON_0013588.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013588 * *Label* = fused metatarsal bones 3 and 4 - * *Definition* = An element formed from the fusion of metatarsal 3 and metatarsal 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://orcid.org/0000-0001-7920-5321] + * *Definition* = An element formed from the fusion of metatarsal 3 and metatarsal 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://orcid.org/0000-0001-7920-5321 ] * *Comment* = In many artiodactyls, the 3rd & 4th metapodials are fused, creating a main metapodial. ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [metatarsal bone of digit 3](../../UBERON/52/UBERON_0003652.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [metatarsal bone of digit 4](../../UBERON/53/UBERON_0003653.md) and [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013588 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0013688.md b/md/UBERON/88/UBERON_0013688.md index b42e118e6d..ffbdf26e3c 100644 --- a/md/UBERON/88/UBERON_0013688.md +++ b/md/UBERON/88/UBERON_0013688.md @@ -7,7 +7,7 @@ ## Synonyms - * tonsil reaction center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-1288] + * tonsil reaction center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-1288 ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [germinal center](../../UBERON/54/UBERON_0010754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tonsil](../../UBERON/72/UBERON_0002372.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The germinal center or reaction center is the activated center of a lymphoid follicle in secondary lymphoid tissue where B-lymphocytes are stimulated by antigens and helper T cells (T-lymphocytes, helper-inducer) are stimulated to generate memory cells. Here, the germinal center of a tonsil[TS-1288]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013688 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0014288.md b/md/UBERON/88/UBERON_0014288.md index 15bca0dc83..f4b1b63db0 100644 --- a/md/UBERON/88/UBERON_0014288.md +++ b/md/UBERON/88/UBERON_0014288.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014288 * *Label* = dorsal accessory olive - * *Definition* = Regional part of inferior olivary complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100310] + * *Definition* = Regional part of inferior olivary complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100310 ] ## Synonyms - * DAO [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100310] - * dorsal accessory olive [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100310] - * inferior olivary complex dorsalaccessory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:IOda] + * DAO [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100310 ] + * dorsal accessory olive [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100310 ] + * inferior olivary complex dorsalaccessory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:IOda ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014288 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0014388.md b/md/UBERON/88/UBERON_0014388.md index bf640ec002..6be3278a89 100644 --- a/md/UBERON/88/UBERON_0014388.md +++ b/md/UBERON/88/UBERON_0014388.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014388 * *Label* = kidney collecting duct epithelium - * *Definition* = The simple cuboidal epithelium lining the lumen of kidney collecting ducts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011843] + * *Definition* = The simple cuboidal epithelium lining the lumen of kidney collecting ducts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011843 ] * *Comment* = In mouse, the mature and differentiated CD epithelium comprises two unique cells types with principal cells responsible for vasopressin-regulated water reabsorption, and intercalated cells regulating acid-base homeostasis; injury to the epithelium is believed to cause epithelial cells to acquire mesenchymal characteristics via epithelial-mesenchymal transition (EMT), a process through which tubular epithelial cells may transform into interstitial fibroblasts and promote renal fibrosis ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [collecting duct of renal tubule](../../UBERON/32/UBERON_0001232.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0014488.md b/md/UBERON/88/UBERON_0014488.md index be167cecd8..2c261da88d 100644 --- a/md/UBERON/88/UBERON_0014488.md +++ b/md/UBERON/88/UBERON_0014488.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014488 * *Label* = middle phalanx of digit 2 - * *Definition* = A middle phalanx that is part of a digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A middle phalanx that is part of a digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 2](../../UBERON/49/UBERON_0006049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014488 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0014788.md b/md/UBERON/88/UBERON_0014788.md index e34bb7ca73..5572c36461 100644 --- a/md/UBERON/88/UBERON_0014788.md +++ b/md/UBERON/88/UBERON_0014788.md @@ -6,7 +6,7 @@ ## Synonyms - * extraembryonic umbilical vein right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001722] + * extraembryonic umbilical vein right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001722 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [extraembryonic umbilical vein](../../UBERON/86/UBERON_0014786.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014788 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0014888.md b/md/UBERON/88/UBERON_0014888.md index c0f1f321b7..f687b38e48 100644 --- a/md/UBERON/88/UBERON_0014888.md +++ b/md/UBERON/88/UBERON_0014888.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014888 * *Label* = iliotibialis muscle - * *Definition* = A muscle in amphibians that connects originates in the ilium and inserts in the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A muscle in amphibians that connects originates in the ilium and inserts in the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014888 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_0015088.md b/md/UBERON/88/UBERON_0015088.md index c288c2ebfc..e90c115580 100644 --- a/md/UBERON/88/UBERON_0015088.md +++ b/md/UBERON/88/UBERON_0015088.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal bone 2 endochondral element](../../UBERON/87/UBERON_0015087.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015088 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000088.md b/md/UBERON/88/UBERON_2000088.md index 076814105d..35ba6b7562 100644 --- a/md/UBERON/88/UBERON_2000088.md +++ b/md/UBERON/88/UBERON_2000088.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000088 * *Label* = YSL - * *Definition* = Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * periblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] - * yolk syncytial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * periblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] + * yolk syncytial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000188.md b/md/UBERON/88/UBERON_2000188.md index 3e661e333a..242c33ef0a 100644 --- a/md/UBERON/88/UBERON_2000188.md +++ b/md/UBERON/88/UBERON_2000188.md @@ -6,8 +6,8 @@ ## Synonyms - * cerebellar corpus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000188] - * corpus cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000188] + * cerebellar corpus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000188 ] + * corpus cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000188 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000288.md b/md/UBERON/88/UBERON_2000288.md index 57a534f6b7..58ae88cab7 100644 --- a/md/UBERON/88/UBERON_2000288.md +++ b/md/UBERON/88/UBERON_2000288.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000388.md b/md/UBERON/88/UBERON_2000388.md index d4a546c0cb..6a8861e10e 100644 --- a/md/UBERON/88/UBERON_2000388.md +++ b/md/UBERON/88/UBERON_2000388.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000488.md b/md/UBERON/88/UBERON_2000488.md index 15a553fbe5..b959308487 100644 --- a/md/UBERON/88/UBERON_2000488.md +++ b/md/UBERON/88/UBERON_2000488.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000488 * *Label* = ceratobranchial bone - * *Definition* = Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * ceratobranchials [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000488[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * ceratobranchials [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000488, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000688.md b/md/UBERON/88/UBERON_2000688.md index 31b809df5f..c5bc334fea 100644 --- a/md/UBERON/88/UBERON_2000688.md +++ b/md/UBERON/88/UBERON_2000688.md @@ -6,7 +6,7 @@ ## Synonyms - * support cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000688[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * support cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000688, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000853 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_2000788.md b/md/UBERON/88/UBERON_2000788.md index 5c0a24a07a..f86e640582 100644 --- a/md/UBERON/88/UBERON_2000788.md +++ b/md/UBERON/88/UBERON_2000788.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2000988.md b/md/UBERON/88/UBERON_2000988.md index fee74ee434..cc3f59ed19 100644 --- a/md/UBERON/88/UBERON_2000988.md +++ b/md/UBERON/88/UBERON_2000988.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000988 * *Label* = hypaxial region somite 5 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001188.md b/md/UBERON/88/UBERON_2001188.md index 904713f4d4..f1c9fa39b1 100644 --- a/md/UBERON/88/UBERON_2001188.md +++ b/md/UBERON/88/UBERON_2001188.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001188 * *Label* = Weberian apparatus - * *Definition* = Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001388.md b/md/UBERON/88/UBERON_2001388.md index d8c230cef0..1593081224 100644 --- a/md/UBERON/88/UBERON_2001388.md +++ b/md/UBERON/88/UBERON_2001388.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelial-mesenchymal boundary](../../UBERON/37/UBERON_0012437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [regenerating fin/limb](../../UBERON/69/UBERON_2001269.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001388 + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001588.md b/md/UBERON/88/UBERON_2001588.md index e5dee5a431..c9c8d665b8 100644 --- a/md/UBERON/88/UBERON_2001588.md +++ b/md/UBERON/88/UBERON_2001588.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001588 * *Label* = pectoral fin distal radial bone - * *Definition* = pectoral fin distal radial element that is composed of bone tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial element that is composed of bone tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. ## Synonyms @@ -25,14 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [pectoral fin distal radial element](../../UBERON/88/UBERON_2101588.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001688.md b/md/UBERON/88/UBERON_2001688.md index 9b66160649..fe1b54a7f7 100644 --- a/md/UBERON/88/UBERON_2001688.md +++ b/md/UBERON/88/UBERON_2001688.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001688 * *Label* = palatine cartilage - * *Definition* = palatine cartilage - cartilage that is separate from and anterior to the pterygoquadrate cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = palatine cartilage - cartilage that is separate from and anterior to the pterygoquadrate cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001788.md b/md/UBERON/88/UBERON_2001788.md index e36b89215c..afda768080 100644 --- a/md/UBERON/88/UBERON_2001788.md +++ b/md/UBERON/88/UBERON_2001788.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001788 * *Label* = pelvic splint - * *Definition* = Dermal bone that is located near the lateral margin of the pelvic fin, and lateral to pelvic-fin lepidotrichium 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located near the lateral margin of the pelvic fin, and lateral to pelvic-fin lepidotrichium 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001888.md b/md/UBERON/88/UBERON_2001888.md index 3b77b78000..29fdb3a367 100644 --- a/md/UBERON/88/UBERON_2001888.md +++ b/md/UBERON/88/UBERON_2001888.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001888 * *Label* = supraneural 1 bone - * *Definition* = Supraneural bone located dorsal to vertebra 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Supraneural bone located dorsal to vertebra 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2001988.md b/md/UBERON/88/UBERON_2001988.md index 7246a23656..7c0642a476 100644 --- a/md/UBERON/88/UBERON_2001988.md +++ b/md/UBERON/88/UBERON_2001988.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001988 * *Label* = centrum 6 - * *Definition* = Centrum that is part of vertebra 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Centrum that is part of vertebra 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2002088.md b/md/UBERON/88/UBERON_2002088.md index a5fe88ee50..3eb7fe9d48 100644 --- a/md/UBERON/88/UBERON_2002088.md +++ b/md/UBERON/88/UBERON_2002088.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002088 * *Label* = interhaemal bone - * *Definition* = A small bone articulating distally with the haemal arch or a short haemal spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A small bone articulating distally with the haemal arch or a short haemal spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition from Arratia 1999. ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2002288.md b/md/UBERON/88/UBERON_2002288.md index 9fb6a598d8..1cf41b994c 100644 --- a/md/UBERON/88/UBERON_2002288.md +++ b/md/UBERON/88/UBERON_2002288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002288 * *Label* = obsolete aqueous humor - * *Definition* = Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-050701-15] + * *Definition* = Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-050701-15 ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001796 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_2005088.md b/md/UBERON/88/UBERON_2005088.md index f373ac2dfe..f9bcb1ad23 100644 --- a/md/UBERON/88/UBERON_2005088.md +++ b/md/UBERON/88/UBERON_2005088.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005088 * *Label* = posterior mesenteric artery - * *Definition* = Unpaired artery departing from dorsal aorta that typically supplies the large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Unpaired artery departing from dorsal aorta that typically supplies the large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * PMA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005088] - * caudal mesenteric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005088] + * PMA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005088 ] + * caudal mesenteric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005088 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2005188.md b/md/UBERON/88/UBERON_2005188.md index 3c3e7b3af5..06edc90402 100644 --- a/md/UBERON/88/UBERON_2005188.md +++ b/md/UBERON/88/UBERON_2005188.md @@ -6,7 +6,7 @@ ## Synonyms - * middle rostral 1 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005188] + * middle rostral 1 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005188 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_2101588.md b/md/UBERON/88/UBERON_2101588.md index d62313cdea..a0b230a51f 100644 --- a/md/UBERON/88/UBERON_2101588.md +++ b/md/UBERON/88/UBERON_2101588.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2101588 * *Label* = pectoral fin distal radial element - * *Definition* = Pectoral fin radial element that sometimes ossifies, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial element is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Pectoral fin radial element that sometimes ossifies, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia. Pectoral fin distal radial element is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = A variable number of pectoral distal radial elements may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. ## Synonyms @@ -27,7 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_2201588.md b/md/UBERON/88/UBERON_2201588.md index 2d8668f29b..421d3fe978 100644 --- a/md/UBERON/88/UBERON_2201588.md +++ b/md/UBERON/88/UBERON_2201588.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2201588 * *Label* = pectoral fin distal radial cartilage - * *Definition* = pectoral fin distal radial element that is composed of cartilage tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = pectoral fin distal radial element that is composed of cartilage tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. ## Synonyms @@ -23,14 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pectoral fin distal radial element](../../UBERON/88/UBERON_2101588.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3000088.md b/md/UBERON/88/UBERON_3000088.md index be02eb4b4b..740f1e903d 100644 --- a/md/UBERON/88/UBERON_3000088.md +++ b/md/UBERON/88/UBERON_3000088.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3000288.md b/md/UBERON/88/UBERON_3000288.md index 8f62bb2a25..5f9db89caa 100644 --- a/md/UBERON/88/UBERON_3000288.md +++ b/md/UBERON/88/UBERON_3000288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000288 * *Label* = maxillopalatine - * *Definition* = A compound bone consisting of maxilla and palatine, can also contain a prefrontal and/or lacrimal; present in adult Gymnophiona. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A compound bone consisting of maxilla and palatine, can also contain a prefrontal and/or lacrimal; present in adult Gymnophiona. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3000388.md b/md/UBERON/88/UBERON_3000388.md index d47ba1361b..81ba67bb56 100644 --- a/md/UBERON/88/UBERON_3000388.md +++ b/md/UBERON/88/UBERON_3000388.md @@ -6,7 +6,7 @@ ## Synonyms - * parasphenoid teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000388] + * parasphenoid teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000388 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3000588.md b/md/UBERON/88/UBERON_3000588.md index 0d2623fa20..0fb743afe2 100644 --- a/md/UBERON/88/UBERON_3000588.md +++ b/md/UBERON/88/UBERON_3000588.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000588 * *Label* = obsolete supraoccipital - * *Definition* = Median, unpaired bone that can form the dorsal margin of the foramen magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:curator] + * *Definition* = Median, unpaired bone that can form the dorsal margin of the foramen magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:curator ] ## Synonyms @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:3010834 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_3000688.md b/md/UBERON/88/UBERON_3000688.md index ba2faabf48..210770eb28 100644 --- a/md/UBERON/88/UBERON_3000688.md +++ b/md/UBERON/88/UBERON_3000688.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000688 * *Label* = prominentia apicalis dorsalis - * *Definition* = Anterior end of the arytenoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior end of the arytenoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * prominentia apicalis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000688] + * prominentia apicalis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000688 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3010188.md b/md/UBERON/88/UBERON_3010188.md index 7ae1b227bf..8f51c6820c 100644 --- a/md/UBERON/88/UBERON_3010188.md +++ b/md/UBERON/88/UBERON_3010188.md @@ -6,7 +6,7 @@ ## Synonyms - * palmar tubercle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010188] + * palmar tubercle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010188 ] ## Cross-references @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_3010288.md b/md/UBERON/88/UBERON_3010288.md index f96f500d4b..3c42e11936 100644 --- a/md/UBERON/88/UBERON_3010288.md +++ b/md/UBERON/88/UBERON_3010288.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010288 * *Label* = obsolete fibroblast - * *Definition* = A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000057 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/88/UBERON_4000088.md b/md/UBERON/88/UBERON_4000088.md index 92ac20567f..d8be65f860 100644 --- a/md/UBERON/88/UBERON_4000088.md +++ b/md/UBERON/88/UBERON_4000088.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000088 * *Label* = mineralized cartilage tissue - * *Definition* = Cartilage tissue that is mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Cartilage tissue that is mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_4200088.md b/md/UBERON/88/UBERON_4200088.md index 94785d5fb0..f6195c6853 100644 --- a/md/UBERON/88/UBERON_4200088.md +++ b/md/UBERON/88/UBERON_4200088.md @@ -30,7 +30,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/88/UBERON_4200188.md b/md/UBERON/88/UBERON_4200188.md index 35c9c7f853..2305952a60 100644 --- a/md/UBERON/88/UBERON_4200188.md +++ b/md/UBERON/88/UBERON_4200188.md @@ -26,7 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0000089.md b/md/UBERON/89/UBERON_0000089.md index 154fa1106f..6166534513 100644 --- a/md/UBERON/89/UBERON_0000089.md +++ b/md/UBERON/89/UBERON_0000089.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000089 * *Label* = hypoblast (generic) - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoblast[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3560500&group_id=36855&atid=440764] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoblast, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3560500&group_id=36855&atid=440764 ] * *Comment* = this term groups together disparate structures with different relationships. TODO - consider relationship to UBERON:0000091 ## Synonyms - * hypoblast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001222] - * endomesoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001222] - * hypoblastus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypoblast[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mesendoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * hypoblast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001222 ] + * endomesoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001222 ] + * hypoblastus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypoblast, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mesendoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Cross-references @@ -23,7 +23,7 @@ * MAT:0000418 * MIAA:0000418 * TAO:0000117 - * UMLS:C1512561 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypoblast] + * UMLS:C1512561 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypoblast ] * VHOG:0001222 * Wikipedia:Hypoblast * XAO:0003044 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In mammal and avian, extraembryonic endoderm such as visceral endoderm and hypoblast play essential roles in the embryonic axis formation and germ layer development. These extraembryonic tissues are generally considered to have been created in ancestral amniotes evolved from the Xenopus-type ancestor (reference 1); The endomesoderm secretes as yet unidentified signals that posteriorize the ectoderm, which would otherwise adopt an anterior fate. Our results point to a conserved function at the base of deuterostomes for beta-catenin in germ layer specification and to a causal link in the definition of the posterior part of the embryonic ectoderm by way of activating posteriorizing endomesodermal factors (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0000389.md b/md/UBERON/89/UBERON_0000389.md index 7628f483d3..93341665a2 100644 --- a/md/UBERON/89/UBERON_0000389.md +++ b/md/UBERON/89/UBERON_0000389.md @@ -6,7 +6,7 @@ ## Synonyms - * cortex of lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58970] + * cortex of lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58970 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0000489.md b/md/UBERON/89/UBERON_0000489.md index 1def0731ed..e38ef5b49f 100644 --- a/md/UBERON/89/UBERON_0000489.md +++ b/md/UBERON/89/UBERON_0000489.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000489 * *Label* = cavitated compound organ - * *Definition* = Compound organ that contains one or more macroscopic anatomical spaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Compound organ that contains one or more macroscopic anatomical spaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms - * cavitated organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55671] + * cavitated organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55671 ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [compound organ](../../UBERON/03/UBERON_0003103.md) and [has_part](../../BFO/51/BFO_0000051.md) some [anatomical cavity](../../UBERON/53/UBERON_0002553.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0000989.md b/md/UBERON/89/UBERON_0000989.md index 8efb079cf7..fc14528a3f 100644 --- a/md/UBERON/89/UBERON_0000989.md +++ b/md/UBERON/89/UBERON_0000989.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000989 * *Label* = penis - * *Definition* = The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Penis] + * *Definition* = The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Penis ] * *Comment* = Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca[WP] ## Synonyms @@ -28,7 +28,7 @@ * MIAA:0000186 * OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA * SCTID:265793009 - * UMLS:C0030851 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Penis] + * UMLS:C0030851 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Penis ] * VHOG:0000727 * Wikipedia:Penis * galen:Penis @@ -58,8 +58,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = penile * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = phallic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001089.md b/md/UBERON/89/UBERON_0001089.md index accdf2b707..6a317b8ac3 100644 --- a/md/UBERON/89/UBERON_0001089.md +++ b/md/UBERON/89/UBERON_0001089.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001089 * *Label* = sweat - * *Definition* = Secretion produced by a sweat gland.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sweat] + * *Definition* = Secretion produced by a sweat gland.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sweat ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * skin exudate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001254] + * skin exudate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001254 ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002539 * MESH:A12.200.849 * OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA - * UMLS:C0038984 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sweat] + * UMLS:C0038984 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sweat ] * Wikipedia:Sweat * ncithesaurus:Sweat @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001189.md b/md/UBERON/89/UBERON_0001189.md index 64475181b7..c63d95d2e5 100644 --- a/md/UBERON/89/UBERON_0001189.md +++ b/md/UBERON/89/UBERON_0001189.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001189 * *Label* = left testicular artery - * *Definition* = A testicular artery that supplies a left testicle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A testicular artery that supplies a left testicle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:14760 * MA:0002041 - * UMLS:C0734077 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Left_Spermatic_Artery] + * UMLS:C0734077 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Left_Spermatic_Artery ] * ncithesaurus:Left_Spermatic_Artery ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [supplies](../../FMA/03/FMA_86003.md) some [left testicle](../../UBERON/33/UBERON_0004533.md) and [testicular artery](../../UBERON/87/UBERON_0001187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001289.md b/md/UBERON/89/UBERON_0001289.md index 5a68e5c1ea..e7f971758c 100644 --- a/md/UBERON/89/UBERON_0001289.md +++ b/md/UBERON/89/UBERON_0001289.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001289 * *Label* = descending limb of loop of Henle - * *Definition* = Portion of the renal tubule constituting the first part of the loop of Henle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_henle] + * *Definition* = Portion of the renal tubule constituting the first part of the loop of Henle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_henle ] ## Synonyms @@ -16,7 +16,7 @@ * FMA:17705 * MA:0001679 * SCTID:245350001 - * UMLS:C0227657 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Descending_Limb_of_the_Henle_s_Loop] + * UMLS:C0227657 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Descending_Limb_of_the_Henle_s_Loop ] * Wikipedia:Descending_limb_of_loop_of_henle * http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png * ncithesaurus:Descending_Limb_of_the_Henle_s_Loop @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001389.md b/md/UBERON/89/UBERON_0001389.md index 8894d17c94..6cff1d9c70 100644 --- a/md/UBERON/89/UBERON_0001389.md +++ b/md/UBERON/89/UBERON_0001389.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001389 * *Label* = soleus muscle - * *Definition* = a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Soleus_muscle] + * *Definition* = a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Soleus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * soleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002424] + * soleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002424 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:22542 * MA:0002424 * SCTID:181702007 - * UMLS:C0242694 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Soleus] + * UMLS:C0242694 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Soleus ] * Wikipedia:Soleus_muscle * galen:Soleus * http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg @@ -48,8 +48,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = soleal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001489.md b/md/UBERON/89/UBERON_0001489.md index 74a0ed96db..6aee58a2a3 100644 --- a/md/UBERON/89/UBERON_0001489.md +++ b/md/UBERON/89/UBERON_0001489.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001489 * *Label* = manus joint - * *Definition* = A skeletal joint that is part of a manus (hand) [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeletal joint that is part of a manus (hand) [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = TODO check FMA - use the set class for now ## Synonyms - * articulationes manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71345[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulationes manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71345, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * hand joint * joint of hand * joint of manus - * joint of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * joint of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * manual joint ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71345 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001589.md b/md/UBERON/89/UBERON_0001589.md index b11cebbee9..5eba42071f 100644 --- a/md/UBERON/89/UBERON_0001589.md +++ b/md/UBERON/89/UBERON_0001589.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001589 * *Label* = internal thoracic vein - * *Definition* = In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_vein] + * *Definition* = In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_vein ] * *Comment* = Editor notes: check relationship to 'internal mammary vein' in MA ## Synonyms - * internal mammary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * vena thoracica interna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_thoracic_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * internal mammary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * vena thoracica interna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_thoracic_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:4729 * MA:0002237 * SCTID:281056008 - * UMLS:C0226633 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Thoracic_Vein] + * UMLS:C0226633 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Thoracic_Vein ] * Wikipedia:Internal_thoracic_vein * http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png * ncithesaurus:Internal_Thoracic_Vein @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001689.md b/md/UBERON/89/UBERON_0001689.md index 42fd8d6ea7..12f93ed7b0 100644 --- a/md/UBERON/89/UBERON_0001689.md +++ b/md/UBERON/89/UBERON_0001689.md @@ -1,13 +1,15 @@ -## Class : malleus +## Class : malleus bone * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001689 - * *Label* = malleus - * *Definition* = The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Malleus] + * *Label* = malleus bone + * *Definition* = The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Malleus ] ## Synonyms - * Malleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Malleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anguloarticular - malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000690 ] + * malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001216 ] + * Malleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Malleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +19,7 @@ * MA:0001216 * MESH:A09.246.397.247.524 * SCTID:264090005 - * UMLS:C0024631 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Malleus] + * UMLS:C0024631 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Malleus ] * VHOG:0000690 * Wikipedia:Malleus * http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png @@ -41,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [malleus endochondral element](../../UBERON/18/UBERON_0015018.md) ## Other Logical Axioms @@ -50,8 +52,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001789.md b/md/UBERON/89/UBERON_0001789.md index e57841afb4..09dde644a1 100644 --- a/md/UBERON/89/UBERON_0001789.md +++ b/md/UBERON/89/UBERON_0001789.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001789 * *Label* = outer nuclear layer of retina - * *Definition* = The layer within the retina where the photoreceptor cell bodies reside. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001464] + * *Definition* = The layer within the retina where the photoreceptor cell bodies reside. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001464 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -13,7 +13,7 @@ * stratum nucleare externum (retina) * outer nuclear layer * ONL - * retina, outer nuclear layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Ronl] + * retina, outer nuclear layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Ronl ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001315 * SCTID:280678009 * TAO:0001464 - * UMLS:C0229210 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Outer_Nuclear_Layer_of_Retina] + * UMLS:C0229210 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Outer_Nuclear_Layer_of_Retina ] * VHOG:0001170 * XAO:0003219 * ZFA:0001464 @@ -37,7 +37,7 @@ * [retinal neural layer](../../UBERON/02/UBERON_0003902.md) * [part_of](../../BFO/50/BFO_0000050.md) some [retinal neural layer](../../UBERON/02/UBERON_0003902.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [eye photoreceptor cell](../../CL/87/CL_0000287.md) * [adjacent to](../../RO/20/RO_0002220.md) some [outer plexiform layer of retina](../../UBERON/90/UBERON_0001790.md) ## Equivalencies @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001889.md b/md/UBERON/89/UBERON_0001889.md index 4289283511..466bbc916c 100644 --- a/md/UBERON/89/UBERON_0001889.md +++ b/md/UBERON/89/UBERON_0001889.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0001989.md b/md/UBERON/89/UBERON_0001989.md index e9ec5bd212..4bf8880b5f 100644 --- a/md/UBERON/89/UBERON_0001989.md +++ b/md/UBERON/89/UBERON_0001989.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001989 * *Label* = superior cervical ganglion - * *Definition* = Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cervical_ganglion[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cervical_ganglion, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * superior cervical sympathetic ganglion - * ganglion cervicale superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001325] - * ganglion cervicale superius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_cervical_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion cervicale superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001325 ] + * ganglion cervicale superius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_cervical_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * superior sympathetic cervical ganglion ## Cross-references @@ -28,7 +28,7 @@ * RETIRED_EHDAA2:0001946 * SCTID:279278002 * TAO:0001572 - * UMLS:C0206257 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Cervical_Ganglion] + * UMLS:C0206257 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Cervical_Ganglion ] * Wikipedia:Superior_cervical_ganglion * ZFA:0001572 * http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png @@ -53,8 +53,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002089.md b/md/UBERON/89/UBERON_0002089.md index b142e7e8a8..842fab6690 100644 --- a/md/UBERON/89/UBERON_0002089.md +++ b/md/UBERON/89/UBERON_0002089.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002189.md b/md/UBERON/89/UBERON_0002189.md index 5137f9a209..135c8238fc 100644 --- a/md/UBERON/89/UBERON_0002189.md +++ b/md/UBERON/89/UBERON_0002189.md @@ -7,7 +7,7 @@ ## Synonyms - * kidney outer cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001649] + * kidney outer cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001649 ] * outer renal cortex ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002289.md b/md/UBERON/89/UBERON_0002289.md index cc5c928fa2..55cbb36bf4 100644 --- a/md/UBERON/89/UBERON_0002289.md +++ b/md/UBERON/89/UBERON_0002289.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002289 * *Label* = midbrain cerebral aqueduct - * *Definition* = Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1261] + * *Definition* = Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1261 ] * *Comment* = AO notes: Two distinct classes in ncit. We classify this as a brain ventricle even though it is not classifically regarded as one (3rd = diencephalon, 4th = hindbrains) ## Synonyms - * Sylvian aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_aqueduct] + * Sylvian aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_aqueduct ] * aqueduct (Sylvius) * aqueduct of Sylvius * aqueduct of midbrain - * aqueductus mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78467[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebral aquaduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] - * cerebral aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000208] + * aqueductus mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78467, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebral aquaduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] + * cerebral aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000208 ] * cerebral aqueduct of Sylvius - * medial tectal ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] - * mesencephalic duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_aqueduct] - * mesencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] - * midbrain cerebral aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001163] - * midbrain ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] - * tectal ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] - * Aqueduct ofSylvius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AQ] - * aqueduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AQ] - * aqueductus mesencephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cerebral_aqueduct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cerebral aqueduct proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AQ] - * mesencephalic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000159] + * medial tectal ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] + * mesencephalic duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_aqueduct ] + * mesencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] + * midbrain cerebral aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001163 ] + * midbrain ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] + * tectal ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] + * Aqueduct ofSylvius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AQ ] + * aqueduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AQ ] + * aqueductus mesencephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cerebral_aqueduct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cerebral aqueduct proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AQ ] + * mesencephalic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000159 ] ## Cross-references @@ -46,8 +46,8 @@ * NeuroNames:509 * SCTID:279249003 * TAO:0000159 - * UMLS:C0007769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1261] - * UMLS:C0007769 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aqueduct_of_Sylvius] + * UMLS:C0007769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1261 ] + * UMLS:C0007769 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aqueduct_of_Sylvius ] * VHOG:0000832 * Wikipedia:Cerebral_aqueduct * ZFA:0000159 @@ -80,8 +80,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005684 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002389.md b/md/UBERON/89/UBERON_0002389.md index 433b141613..a76670b7d5 100644 --- a/md/UBERON/89/UBERON_0002389.md +++ b/md/UBERON/89/UBERON_0002389.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002389 * *Label* = manual digit - * *Definition* = A digit that is part of a manus (hand). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A digit that is part of a manus (hand). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9666] + * digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9666 ] * digit of manus * digitus manus - * finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9666] - * fore digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000857[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003036] + * finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9666 ] + * fore digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000857, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003036 ] * forelimb digit - * hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000041] + * hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000041 ] ## Cross-references @@ -28,7 +28,7 @@ * NIF_GrossAnatomy:nlx_anat_20090602 * OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA * SCTID:283992002 - * UMLS:C0016129 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Finger] + * UMLS:C0016129 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Finger ] * Wikipedia:Finger * XAO:0003036 * galen:Finger @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [digit](../../UBERON/44/UBERON_0002544.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = One of the fingers of the manus.[AAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0000028 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002489.md b/md/UBERON/89/UBERON_0002489.md index ed6d956a60..8059abb353 100644 --- a/md/UBERON/89/UBERON_0002489.md +++ b/md/UBERON/89/UBERON_0002489.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002489 * *Label* = coronal suture - * *Definition* = The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronal_suture] + * *Definition* = The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronal_suture ] ## Synonyms * coronal suture of skull - * fronto-parietal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11784098] - * frontoparietal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11784098] - * sutura coronalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fronto-parietal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11784098 ] + * frontoparietal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11784098 ] + * sutura coronalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [tetrapod frontal bone](../../UBERON/09/UBERON_0000209.md) and [connects](../../ts/core#connects.md) some [tetrapod parietal bone](../../UBERON/10/UBERON_0000210.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002589.md b/md/UBERON/89/UBERON_0002589.md index 93aa31dc22..301832cc59 100644 --- a/md/UBERON/89/UBERON_0002589.md +++ b/md/UBERON/89/UBERON_0002589.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002589 * *Label* = lateral corticospinal tract - * *Definition* = The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_corticospinal_tract] + * *Definition* = The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_corticospinal_tract ] ## Synonyms - * lateral pyramidal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72635] - * corticospinal tract, crossed [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2954] - * crossed corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2954] - * fasciculus cerebrospinalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_corticospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral corticospinal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2954] - * lateral corticospinal tract of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:801] - * tractus corticospinalis (pyramidalis) lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:801[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus corticospinalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_corticospinal_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral pyramidal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72635 ] + * corticospinal tract, crossed [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2954 ] + * crossed corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2954 ] + * fasciculus cerebrospinalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_corticospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral corticospinal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2954 ] + * lateral corticospinal tract of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:801 ] + * tractus corticospinalis (pyramidalis) lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:801, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus corticospinalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_corticospinal_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:lcsp * FMA:72635 * NIF_GrossAnatomy:birnlex_1095 - * NeuroNames:801 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1095] + * NeuroNames:801 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1095 ] * SCTID:369091005 - * UMLS:C0152402 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1095] + * UMLS:C0152402 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1095 ] * Wikipedia:Lateral_corticospinal_tract * http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002689.md b/md/UBERON/89/UBERON_0002689.md index be1d1ededc..b518496543 100644 --- a/md/UBERON/89/UBERON_0002689.md +++ b/md/UBERON/89/UBERON_0002689.md @@ -3,22 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002689 * *Label* = supraoptic crest - * *Definition* = one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Organum_vasculosum_of_the_lamina_terminalis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] - * *Comment* = AO notes: NIF has two classes here + * *Definition* = one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Organum_vasculosum_of_the_lamina_terminalis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376 ] + * *Comment* = AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis ## Synonyms - * OVLT [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * organum vasculosum lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_100313] - * organum vasculosum laminae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * organum vasculosum laminae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * prechiasmatic gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1400] - * vascular organ of lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62315] - * SoC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1400[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * olfactory ventricle (olfactory part of lateral ventricle) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:OV] - * organum vasculosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:383] - * organum vasculosum of lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:383[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vascular organ of the lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:383] + * OVLT [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * organum vasculosum lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_100313, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * organum vasculosum laminae terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * prechiasmatic gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1400 ] + * vascular organ of lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62315 ] + * SoC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1400, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * olfactory ventricle (olfactory part of lateral ventricle) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:OV ] + * organum vasculosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:383 ] + * organum vasculosum of lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:383, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vascular organ of the lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:383 ] ## Cross-references @@ -30,8 +29,8 @@ * MA:0003018 * NIF_GrossAnatomy:birnlex_1400 * NIF_GrossAnatomy:nlx_anat_100313 - * NeuroNames:383 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1400] - * UMLS:C0175316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1400] + * NeuroNames:383 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1400 ] + * UMLS:C0175316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1400 ] * Wikipedia:Organum_vasculosum_of_the_lamina_terminalis ## Subsets @@ -52,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002789.md b/md/UBERON/89/UBERON_0002789.md index 509d3dfe06..b093e6533e 100644 --- a/md/UBERON/89/UBERON_0002789.md +++ b/md/UBERON/89/UBERON_0002789.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002789 * *Label* = regional part of posterior hypothalamic region - * *Definition* = A regional part of brain that is part of a posterior hypothalamic region [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a posterior hypothalamic region [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * posterior hypothalamic region segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62311] - * segment of posterior hypothalamic region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1697] + * posterior hypothalamic region segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62311 ] + * segment of posterior hypothalamic region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1697 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior hypothalamic region](../../UBERON/70/UBERON_0002770.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002889.md b/md/UBERON/89/UBERON_0002889.md index 1dd689e678..c90d48e018 100644 --- a/md/UBERON/89/UBERON_0002889.md +++ b/md/UBERON/89/UBERON_0002889.md @@ -6,19 +6,19 @@ ## Synonyms - * basomedial amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BMA] - * basomedial amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68858[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002922] - * medial basal nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68858] - * medial division of basal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68858] - * nucleus amygdalae basalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68858[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * basomedial amygdaloid nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BMA] - * basomedial amygdaloid nucleus anterior subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BMA] - * basomedial amygdaloid nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:BMA] - * medial part of the basal amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:248] - * medial part of the basolateral nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:248] - * nucleus amygdalae basalis, pars medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:248[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus amygdaloideus basalis pars lateralis parvocellularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:248[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus basalis medialis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:248[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basomedial amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BMA ] + * basomedial amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68858, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002922 ] + * medial basal nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68858 ] + * medial division of basal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68858 ] + * nucleus amygdalae basalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68858, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * basomedial amygdaloid nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BMA ] + * basomedial amygdaloid nucleus anterior subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BMA ] + * basomedial amygdaloid nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:BMA ] + * medial part of the basal amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:248 ] + * medial part of the basolateral nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:248 ] + * nucleus amygdalae basalis, pars medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:248, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus amygdaloideus basalis pars lateralis parvocellularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:248, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus basalis medialis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:248, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,8 @@ * FMA:68858 * MA:0002922 * NIF_GrossAnatomy:birnlex_2696 - * NeuroNames:248 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2696] - * UMLS:C1134422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2696] + * NeuroNames:248 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2696 ] + * UMLS:C1134422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2696 ] ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0002989.md b/md/UBERON/89/UBERON_0002989.md index 63728e106e..a0bf70ec4f 100644 --- a/md/UBERON/89/UBERON_0002989.md +++ b/md/UBERON/89/UBERON_0002989.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002989 * *Label* = anconeus muscle - * *Definition* = A small muscle on the posterior aspect of the elbow joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anconeus_muscle] + * *Definition* = A small muscle on the posterior aspect of the elbow joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anconeus_muscle ] * *Comment* = Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm. ## Synonyms - * anconeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anconeus_muscle] - * m. anconeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010714] - * musculus anconaeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anconeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * musculus anconeus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anconeus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anconeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anconeus_muscle ] + * m. anconeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010714 ] + * musculus anconaeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anconeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * musculus anconeus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anconeus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003089.md b/md/UBERON/89/UBERON_0003089.md index e244d7edd8..2c0300c1ea 100644 --- a/md/UBERON/89/UBERON_0003089.md +++ b/md/UBERON/89/UBERON_0003089.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003089 * *Label* = sclerotome - * *Definition* = Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclerotome[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XB:curator] + * *Definition* = Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclerotome, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XB:curator ] * *Comment* = AO notes: part_of somite in XAO ## Synonyms - * sclerotomes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001080[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sclerotomus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclerotome[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sclerotomes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001080, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sclerotomus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclerotome, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * AEO:0000212 * EHDAA2:0003439 * TAO:0001080 - * UMLS:C0183176 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sclerotome] + * UMLS:C0183176 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sclerotome ] * VHOG:0000680 * Wikipedia:Sclerotome * XAO:0000397 @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletogenic portion of somites.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The vertebrate sclerotome has no equivalent in amphioxus and is a novelty linked with the evolution of the axial skeleton.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003189.md b/md/UBERON/89/UBERON_0003189.md index 7d9ec598a3..62d57528a3 100644 --- a/md/UBERON/89/UBERON_0003189.md +++ b/md/UBERON/89/UBERON_0003189.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004658 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0001043 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003189 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_0003289.md b/md/UBERON/89/UBERON_0003289.md index c7da023959..162454cbcf 100644 --- a/md/UBERON/89/UBERON_0003289.md +++ b/md/UBERON/89/UBERON_0003289.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003289 * *Label* = meninx of telencephalon - * *Definition* = A meninx that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: consider changing genus to subdivision of meninx ## Synonyms - * meninges of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * telencephalon meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * telencephalon meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * meninges of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * telencephalon meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * telencephalon meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the telencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003389.md b/md/UBERON/89/UBERON_0003389.md index 818224aa78..96c104322c 100644 --- a/md/UBERON/89/UBERON_0003389.md +++ b/md/UBERON/89/UBERON_0003389.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003389 * *Label* = mesothelium of diaphragm - * *Definition* = A mesothelium that is part of a diaphragm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a diaphragm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diaphragm meso-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diaphragm mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meso-epithelium of diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meso-epithelium of thoracic diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesothelium of thoracic diaphragm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic diaphragm meso-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic diaphragm mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * diaphragm meso-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diaphragm mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meso-epithelium of diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meso-epithelium of thoracic diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesothelium of thoracic diaphragm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic diaphragm meso-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic diaphragm mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesothelium](../../UBERON/36/UBERON_0001136.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003489.md b/md/UBERON/89/UBERON_0003489.md index a759d603d7..faaef69aad 100644 --- a/md/UBERON/89/UBERON_0003489.md +++ b/md/UBERON/89/UBERON_0003489.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003489 * *Label* = respiratory system capillary endothelium - * *Definition* = An endothelium of capillary that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium of capillary that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius blood capillary endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius capillary endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius capillary vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius endothelium of blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius endothelium of capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius endothelium of capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood capillary endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood capillary endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel endothelium of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * capillary vessel endothelium of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of blood capillary of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of blood capillary of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of capillary of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of capillary of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of capillary vessel of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * endothelium of capillary vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system blood capillary endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system capillary vessel endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of blood capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of capillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system endothelium of capillary vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius blood capillary endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius capillary endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius capillary vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius endothelium of blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius endothelium of capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius endothelium of capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood capillary endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood capillary endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel endothelium of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * capillary vessel endothelium of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of blood capillary of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of blood capillary of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of capillary of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of capillary of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of capillary vessel of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * endothelium of capillary vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system blood capillary endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system capillary vessel endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of blood capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of capillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system endothelium of capillary vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium of capillary](../../UBERON/15/UBERON_0001915.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003589.md b/md/UBERON/89/UBERON_0003589.md index 6d37d1365d..3fb408e04a 100644 --- a/md/UBERON/89/UBERON_0003589.md +++ b/md/UBERON/89/UBERON_0003589.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003589 * *Label* = hindlimb connective tissue - * *Definition* = A portion of connective tissue that is part of a hindlimb [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a hindlimb [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003689.md b/md/UBERON/89/UBERON_0003689.md index a65086e315..b1d415b2bf 100644 --- a/md/UBERON/89/UBERON_0003689.md +++ b/md/UBERON/89/UBERON_0003689.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003689 * *Label* = sella turcica - * *Definition* = The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sella_turcica] + * *Definition* = The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sella_turcica ] * *Comment* = Editor notes: for consistency with FMA we have a separate class for the cavity of the sella turcica ## Synonyms - * Turkey Chair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sella_turcica[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * suprasellar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sella_turcica] - * turkish saddle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sella_turcica] + * Turkey Chair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sella_turcica, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * suprasellar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sella_turcica ] + * turkish saddle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sella_turcica ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:231 * MESH:A02.835.232.781.802.662 * SCTID:368554001 - * UMLS:C0036609 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sella_Turcica] + * UMLS:C0036609 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sella_Turcica ] * Wikipedia:Sella_turcica * http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003889.md b/md/UBERON/89/UBERON_0003889.md index f4d666b1dc..d6711a76f5 100644 --- a/md/UBERON/89/UBERON_0003889.md +++ b/md/UBERON/89/UBERON_0003889.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003889 * *Label* = fallopian tube - * *Definition* = Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fallopian_tube] + * *Definition* = Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fallopian_tube ] * *Comment* = http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology ## Synonyms - * mammalian oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764] + * mammalian oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764 ] * uterine tube (sensu Mammalia) - * salpinges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * salpinges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * salpinx * fallopian tubes - * female paramesonephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000504] - * tuba uterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fallopian_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * female paramesonephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000504 ] + * tuba uterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fallopian_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A05.360.319.114.373 * OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA * SCTID:181463001 - * UMLS:C0015560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fallopian_Tube] + * UMLS:C0015560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fallopian_Tube ] * Wikipedia:Fallopian_tube * galen:FallopianTube * http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg @@ -54,15 +54,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [Mullerian duct](../../UBERON/90/UBERON_0003890.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oviduct](../../UBERON/93/UBERON_0000993.md) and [tube](../../UBERON/25/UBERON_0000025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0003989.md b/md/UBERON/89/UBERON_0003989.md index c97b4600fe..f171016cd0 100644 --- a/md/UBERON/89/UBERON_0003989.md +++ b/md/UBERON/89/UBERON_0003989.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003989 * *Label* = medulla oblongata anterior median fissure - * *Definition* = the longitudinal groove in the midline of the anterior aspect of the medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009680] + * *Definition* = the longitudinal groove in the midline of the anterior aspect of the medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009680 ] ## Synonyms - * anterior median fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734] - * anterior median fissure of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734] - * anterior median fissure of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734] - * fissura mediana anterior medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral median fissure of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734] - * ventral median sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83734] + * anterior median fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734 ] + * anterior median fissure of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734 ] + * anterior median fissure of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734 ] + * fissura mediana anterior medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral median fissure of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734 ] + * ventral median sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83734 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004089.md b/md/UBERON/89/UBERON_0004089.md index 2c340c3370..460c0a275a 100644 --- a/md/UBERON/89/UBERON_0004089.md +++ b/md/UBERON/89/UBERON_0004089.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004089 * *Label* = midface - * *Definition* = the middle of the face including the nose and its associated bony structures[MW]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000309[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/midface] + * *Definition* = the middle of the face including the nose and its associated bony structures[MW]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000309, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/midface ] * *Comment* = editors note: this class is currently a union of the snout (e.g. in mouse), the midface and the lower face. Note that in MA, snout includes the whole jaw and should thus be more alike the lower face than the midface, so its placement here is not strictly accurate. In future we might introduce specific classes for each of these, and include the full parthood relationships. if this is done, then care should be taken to preserve inferences such as an abnormality of the lower face being an abnormality of the midface. ## Synonyms * lower face * midface/lower face - * snout [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001910[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * snout [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001910, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = midfacial - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004189.md b/md/UBERON/89/UBERON_0004189.md index 42341251aa..3615bfb95c 100644 --- a/md/UBERON/89/UBERON_0004189.md +++ b/md/UBERON/89/UBERON_0004189.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004189 * *Label* = glomerular endothelium - * *Definition* = The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072011] + * *Definition* = The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072011 ] ## Synonyms - * endothelium of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endothelium of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004289.md b/md/UBERON/89/UBERON_0004289.md index c1a349918a..b66695b196 100644 --- a/md/UBERON/89/UBERON_0004289.md +++ b/md/UBERON/89/UBERON_0004289.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004289 * *Label* = radula - * *Definition* = an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Radula] + * *Definition* = an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Radula ] * *Comment* = The first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004389.md b/md/UBERON/89/UBERON_0004389.md index 4db914bb36..dab8065f21 100644 --- a/md/UBERON/89/UBERON_0004389.md +++ b/md/UBERON/89/UBERON_0004389.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004389 * *Label* = epiphysis of metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * epiphysis of metatarsal - * metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33814] + * metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33814 ] * metatarsal epiphysis ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004489.md b/md/UBERON/89/UBERON_0004489.md index 4913b43db6..e98f34dc6a 100644 --- a/md/UBERON/89/UBERON_0004489.md +++ b/md/UBERON/89/UBERON_0004489.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004489 * *Label* = musculature of manus - * *Definition* = Any collection of muscles that is part of a manus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a manus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hand musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42368] - * muscle group of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42368] - * musculature of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42368] - * set of muscles of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42368] + * hand musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42368 ] + * muscle group of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42368 ] + * musculature of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42368 ] + * set of muscles of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42368 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004689.md b/md/UBERON/89/UBERON_0004689.md index f547e536d0..8bb5d9881a 100644 --- a/md/UBERON/89/UBERON_0004689.md +++ b/md/UBERON/89/UBERON_0004689.md @@ -6,7 +6,7 @@ ## Synonyms - * nasofrontal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:51729] + * nasofrontal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:51729 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004789.md b/md/UBERON/89/UBERON_0004789.md index bf06d4f4dd..14914dc1f5 100644 --- a/md/UBERON/89/UBERON_0004789.md +++ b/md/UBERON/89/UBERON_0004789.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004789 * *Label* = larynx mucous gland - * *Definition* = A mucous gland that is part of a larynx [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucous gland that is part of a larynx [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucous gland of larynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucous gland of larynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucous gland](../../UBERON/14/UBERON_0000414.md) and [part_of](../../BFO/50/BFO_0000050.md) some [larynx](../../UBERON/37/UBERON_0001737.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004889.md b/md/UBERON/89/UBERON_0004889.md index 09eef714da..e00377d7e5 100644 --- a/md/UBERON/89/UBERON_0004889.md +++ b/md/UBERON/89/UBERON_0004889.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004889 * *Label* = lobar bronchus vasculature - * *Definition* = Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012616] + * *Definition* = Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012616 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0004989.md b/md/UBERON/89/UBERON_0004989.md index 87888f9a46..4553ba90eb 100644 --- a/md/UBERON/89/UBERON_0004989.md +++ b/md/UBERON/89/UBERON_0004989.md @@ -3,42 +3,42 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004989 * *Label* = mucosa of appendix - * *Definition* = A mucosa that is part of an appendix [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of an appendix [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * appendiceal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14991] - * appendix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * appendix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * appendix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * appendix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecal appendix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecal appendix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecal appendix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * caecal appendix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of caecal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of caecal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of vermix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of vermix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of caecal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of vermix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of caecal appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of vermix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermiform appendix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermiform appendix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermiform appendix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermiform appendix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermix mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermix mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermix mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vermix organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * appendiceal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14991 ] + * appendix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * appendix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * appendix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * appendix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecal appendix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecal appendix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecal appendix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * caecal appendix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of caecal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of caecal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of vermix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of vermix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of caecal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of vermix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of caecal appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of vermix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermiform appendix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermiform appendix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermiform appendix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermiform appendix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermix mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermix mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermix mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vermix organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -56,15 +56,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005089.md b/md/UBERON/89/UBERON_0005089.md index 6571e107bd..cc51608589 100644 --- a/md/UBERON/89/UBERON_0005089.md +++ b/md/UBERON/89/UBERON_0005089.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005089 * *Label* = sweat gland placode - * *Definition* = An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0060793] + * *Definition* = An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0060793 ] * *Comment* = todo - add bud ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ectodermal placode](../../UBERON/85/UBERON_0005085.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [sweat gland](../../UBERON/20/UBERON_0001820.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005189.md b/md/UBERON/89/UBERON_0005189.md index ac0dc57ffd..dc04a23f9e 100644 --- a/md/UBERON/89/UBERON_0005189.md +++ b/md/UBERON/89/UBERON_0005189.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0004359 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005189 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_0005289.md b/md/UBERON/89/UBERON_0005289.md index 41ff5a3833..bd2445265d 100644 --- a/md/UBERON/89/UBERON_0005289.md +++ b/md/UBERON/89/UBERON_0005289.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005289 * *Label* = tela choroidea of telencephalic ventricle - * *Definition* = Tela chorioidea that lines the telencephalic ventricle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tela chorioidea that lines the telencephalic ventricle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms * tela chorioidea of lateral ventricle * tela chorioidea of telencephalic ventricle - * tela chorioidea telencephalic ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005160] - * tela choroidea of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83712] + * tela chorioidea telencephalic ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005160 ] + * tela choroidea of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83712 ] * tela choroidea telencephalic ventricle ## Cross-references @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) and [tela choroidea](../../UBERON/83/UBERON_0005283.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005389.md b/md/UBERON/89/UBERON_0005389.md index 21df0e3433..179895faa9 100644 --- a/md/UBERON/89/UBERON_0005389.md +++ b/md/UBERON/89/UBERON_0005389.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005489.md b/md/UBERON/89/UBERON_0005489.md index 273bd40bc4..a3b2090f37 100644 --- a/md/UBERON/89/UBERON_0005489.md +++ b/md/UBERON/89/UBERON_0005489.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005489 * *Label* = anterior interventricular sulcus - * *Definition* = The ventricles of the heart are separated by two grooves, one of which, the anterior longitudinal sulcus (or anterior interventricular sulcus), is situated on the sternocostal surface of the heart, close to its left margin. The other groove separating the ventricles is the posterior interventricular sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_interventricular_sulcus] + * *Definition* = The ventricles of the heart are separated by two grooves, one of which, the anterior longitudinal sulcus (or anterior interventricular sulcus), is situated on the sternocostal surface of the heart, close to its left margin. The other groove separating the ventricles is the posterior interventricular sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_interventricular_sulcus ] ## Synonyms - * anterior interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7177] - * anterior interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_interventricular_sulcus] - * anterior longitudinal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_interventricular_sulcus] - * sulcus interventricularis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_interventricular_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7177 ] + * anterior interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_interventricular_sulcus ] + * anterior longitudinal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_interventricular_sulcus ] + * sulcus interventricularis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_interventricular_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005589.md b/md/UBERON/89/UBERON_0005589.md index 6186f03052..f5547ff1e5 100644 --- a/md/UBERON/89/UBERON_0005589.md +++ b/md/UBERON/89/UBERON_0005589.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005589 * *Label* = rhombomere 8 lateral wall - * *Definition* = A rhombomere lateral wall that is part of a rhombomere 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere lateral wall that is part of a rhombomere 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lateral wall rhombomere 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000909] + * lateral wall rhombomere 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000909 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 8](../../UBERON/27/UBERON_0005527.md) and [rhombomere lateral wall](../../UBERON/01/UBERON_0005501.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005689.md b/md/UBERON/89/UBERON_0005689.md index 5fbb491877..062e7f6039 100644 --- a/md/UBERON/89/UBERON_0005689.md +++ b/md/UBERON/89/UBERON_0005689.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005689 * *Label* = 2nd arch mesenchyme - * *Definition* = Mesenchyme that is part of a pharyngeal arch 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pharyngeal arch 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 2nd pharyngeal arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001102] + * 2nd pharyngeal arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001102 ] * 2nd branchial arch mesenchyme * pharyngeal arch 2 mesenchyme @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005789.md b/md/UBERON/89/UBERON_0005789.md index b03cbdf0d0..4a86ed1ebd 100644 --- a/md/UBERON/89/UBERON_0005789.md +++ b/md/UBERON/89/UBERON_0005789.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005789 * *Label* = lamina rara externa - * *Definition* = Layer of the glomerular basement membrane adjacent to the podocytes and capsular space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Layer of the glomerular basement membrane adjacent to the podocytes and capsular space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * external layer of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74275] - * lamina externa of glomerular basement membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74275] + * external layer of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74275 ] + * lamina externa of glomerular basement membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74275 ] ## Cross-references * FMA:74275 * TAO:0005288 - * UMLS:C1517718 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lamina_Rara_Externa] + * UMLS:C1517718 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lamina_Rara_Externa ] * ZFA:0005288 * ncithesaurus:Lamina_Rara_Externa @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [acellular anatomical structure](../../UBERON/76/UBERON_0000476.md) and [adjacent to](../../RO/20/RO_0002220.md) some [Bowman's space](../../UBERON/86/UBERON_0001286.md) and [part_of](../../BFO/50/BFO_0000050.md) some [glomerular basement membrane](../../UBERON/77/UBERON_0005777.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005889.md b/md/UBERON/89/UBERON_0005889.md index 1e1c346def..70a33f0d8f 100644 --- a/md/UBERON/89/UBERON_0005889.md +++ b/md/UBERON/89/UBERON_0005889.md @@ -7,7 +7,7 @@ ## Synonyms - * cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010327[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000216] + * cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010327, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000216 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0005989.md b/md/UBERON/89/UBERON_0005989.md index a3a8e52161..df67879866 100644 --- a/md/UBERON/89/UBERON_0005989.md +++ b/md/UBERON/89/UBERON_0005989.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005989 * *Label* = atrioventricular septum - * *Definition* = the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010592] + * *Definition* = the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010592 ] ## Synonyms - * membranous atrioventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7136] + * membranous atrioventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7136 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) and [adjacent to](../../RO/20/RO_0002220.md) some [right cardiac atrium](../../UBERON/78/UBERON_0002078.md) and [cardiac septum](../../UBERON/99/UBERON_0002099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006089.md b/md/UBERON/89/UBERON_0006089.md index 5517f0bf88..cc98521b3f 100644 --- a/md/UBERON/89/UBERON_0006089.md +++ b/md/UBERON/89/UBERON_0006089.md @@ -6,23 +6,23 @@ ## Synonyms - * dorsal external arcuate fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1250] - * dorsal external arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72630] - * dorsal external arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1250] - * dorsal external arcuate tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72630] - * dorsal superficial arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72630] - * dorsal superficial arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1250] - * external arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1250] - * fibrae arcuatae externae dorsales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:796[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae arcuatae externae posteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:796[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal external arcuate fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1250 ] + * dorsal external arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72630 ] + * dorsal external arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1250 ] + * dorsal external arcuate tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72630 ] + * dorsal superficial arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72630 ] + * dorsal superficial arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1250 ] + * external arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1250 ] + * fibrae arcuatae externae dorsales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:796, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae arcuatae externae posteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:796, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dea * FMA:72630 * NIF_GrossAnatomy:birnlex_1250 - * NeuroNames:796 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1250] - * UMLS:C0175552 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1250] + * NeuroNames:796 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1250 ] + * UMLS:C0175552 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1250 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006189.md b/md/UBERON/89/UBERON_0006189.md index 8dd9c285b7..c157f5cb43 100644 --- a/md/UBERON/89/UBERON_0006189.md +++ b/md/UBERON/89/UBERON_0006189.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006189 * *Label* = mesonephric connecting tubule - * *Definition* = The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061272] + * *Definition* = The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061272 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [renal connecting tubule](../../UBERON/97/UBERON_0005097.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006289.md b/md/UBERON/89/UBERON_0006289.md index 8c89a9e9b8..b75a7e73a5 100644 --- a/md/UBERON/89/UBERON_0006289.md +++ b/md/UBERON/89/UBERON_0006289.md @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [rib endochondral element](../../UBERON/19/UBERON_0015019.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006489.md b/md/UBERON/89/UBERON_0006489.md index 3107c9fd91..0e512e433c 100644 --- a/md/UBERON/89/UBERON_0006489.md +++ b/md/UBERON/89/UBERON_0006489.md @@ -6,16 +6,16 @@ ## Synonyms - * C2 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71180] - * C2 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_752] - * second cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_752] + * C2 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71180 ] + * C2 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_752 ] + * second cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_752 ] ## Cross-references * FMA:71180 * NIF_GrossAnatomy:birnlex_752 * SCTID:278755004 - * UMLS:C0457852 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_752] + * UMLS:C0457852 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_752 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006589.md b/md/UBERON/89/UBERON_0006589.md index ae24403640..ca381067b6 100644 --- a/md/UBERON/89/UBERON_0006589.md +++ b/md/UBERON/89/UBERON_0006589.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006589 * *Label* = round ligament of uterus - * *Definition* = The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.513.803[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_uterus] + * *Definition* = The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.513.803, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_uterus ] ## Synonyms - * Hunter's ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20420] + * Hunter's ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20420 ] * ligamentum teres of uterus - * ligamentum teres uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_uterus] - * round ligament of the uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_uterus] - * round ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:130] - * ligamentum teres uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Round_ligament_of_uterus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ligamentum teres uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_uterus ] + * round ligament of the uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_uterus ] + * round ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:130 ] + * ligamentum teres uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Round_ligament_of_uterus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:20420 * GAID:130 * SCTID:245495009 - * UMLS:C0035877 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Round_Ligament_of_the_Uterus] + * UMLS:C0035877 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Round_Ligament_of_the_Uterus ] * Wikipedia:Round_ligament_of_uterus * http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png * ncithesaurus:Round_Ligament_of_the_Uterus @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006689.md b/md/UBERON/89/UBERON_0006689.md index 1155c7037a..7fc5ef20b6 100644 --- a/md/UBERON/89/UBERON_0006689.md +++ b/md/UBERON/89/UBERON_0006689.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006689 * *Label* = frenulum of tongue - * *Definition* = The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] + * *Definition* = The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] ## Synonyms - * frenulum linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oral frenula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000190[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * oral frenulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000190] - * tongue frenulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54659] + * frenulum linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oral frenula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000190, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * oral frenulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000190 ] + * tongue frenulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54659 ] * frenulum - * frenulum linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] - * frenulum lingu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] - * frenulum of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] - * lingual frenulum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] - * lingual frenum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frenulum_of_tongue] + * frenulum linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] + * frenulum lingu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] + * frenulum of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] + * lingual frenulum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] + * lingual frenum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frenulum_of_tongue ] ## Cross-references @@ -24,7 +24,7 @@ * EMAPA:18874 * FMA:54659 * SCTID:264113009 - * UMLS:C2339893 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Frenulum] + * UMLS:C2339893 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Frenulum ] * Wikipedia:Frenulum_of_tongue * http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png * ncithesaurus:Frenulum @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0006789.md b/md/UBERON/89/UBERON_0006789.md index f29e1135f8..d20f5e371f 100644 --- a/md/UBERON/89/UBERON_0006789.md +++ b/md/UBERON/89/UBERON_0006789.md @@ -6,16 +6,16 @@ ## Synonyms - * deep grey layer of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72410] - * lamina VI of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris vi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72410[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer VI of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72410] - * stratum griseum profundum colliculi superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72410[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * stratum griseum profundum of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * deep gray layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DpG] - * deep grey layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dgr] - * superior colliculus deep gray layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCdg] - * superior colliculus intermediate deep gray layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCdg] + * deep grey layer of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72410 ] + * lamina VI of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris vi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72410, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer VI of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72410 ] + * stratum griseum profundum colliculi superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72410, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * stratum griseum profundum of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * deep gray layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DpG ] + * deep grey layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dgr ] + * superior colliculus deep gray layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCdg ] + * superior colliculus intermediate deep gray layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCdg ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0007289.md b/md/UBERON/89/UBERON_0007289.md index 78b0039894..ce3eefabd5 100644 --- a/md/UBERON/89/UBERON_0007289.md +++ b/md/UBERON/89/UBERON_0007289.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007289 * *Label* = presumptive rhombomere 1 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 1](../../UBERON/99/UBERON_0005499.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0007389.md b/md/UBERON/89/UBERON_0007389.md index ff656569eb..d53e263215 100644 --- a/md/UBERON/89/UBERON_0007389.md +++ b/md/UBERON/89/UBERON_0007389.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007389 * *Label* = paired limb/fin cartilage - * *Definition* = A cartilage tissue that is part of a paired limb or fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A cartilage tissue that is part of a paired limb or fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paired limb/fin](../../UBERON/08/UBERON_0004708.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage which is part of one of the paired fins.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0007589.md b/md/UBERON/89/UBERON_0007589.md index 6fec05d7cc..e6baf44b3c 100644 --- a/md/UBERON/89/UBERON_0007589.md +++ b/md/UBERON/89/UBERON_0007589.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007589 * *Label* = ciliated columnar oviduct epithelium - * *Definition* = A ciliated columnar epithelium that is part of a oviduct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A ciliated columnar epithelium that is part of a oviduct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label ## Synonyms - * uterine tube epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62016] + * uterine tube epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62016 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [ciliated columnar epithelium](../../UBERON/92/UBERON_0007592.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oviduct](../../UBERON/93/UBERON_0000993.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0007689.md b/md/UBERON/89/UBERON_0007689.md index 3591d3e4ac..28d5c0ff0e 100644 --- a/md/UBERON/89/UBERON_0007689.md +++ b/md/UBERON/89/UBERON_0007689.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007689 * *Label* = thyroid diverticulum - * *Definition* = endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004662[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_diverticulum] + * *Definition* = endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004662, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_diverticulum ] ## Synonyms - * saccus thyroideus; diverticulum thyroideum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thyroid_diverticulum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * saccus thyroideus; diverticulum thyroideum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thyroid_diverticulum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0008589.md b/md/UBERON/89/UBERON_0008589.md index ccbc17613c..4cf82dc1c5 100644 --- a/md/UBERON/89/UBERON_0008589.md +++ b/md/UBERON/89/UBERON_0008589.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008589 * *Label* = depressor septi nasi - * *Definition* = The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle] + * *Definition* = The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle ] ## Synonyms - * depressor septi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle] - * depressor alae nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle] - * depressor al nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle] - * depressor septi nasi muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle] - * musculus depressor septi nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_septi_nasi_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * depressor septi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle ] + * depressor alae nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle ] + * depressor al nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle ] + * depressor septi nasi muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle ] + * musculus depressor septi nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_septi_nasi_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0008789.md b/md/UBERON/89/UBERON_0008789.md index a810ee0772..bd6423c60e 100644 --- a/md/UBERON/89/UBERON_0008789.md +++ b/md/UBERON/89/UBERON_0008789.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008789 * *Label* = cranial fossa - * *Definition* = any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://mw1.merriam-webster.com/medical/cranial%20fossa] + * *Definition* = any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://mw1.merriam-webster.com/medical/cranial%20fossa ] * *Comment* = editor note - todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone fossa](../../UBERON/04/UBERON_0004704.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cranium](../../UBERON/28/UBERON_0003128.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0008889.md b/md/UBERON/89/UBERON_0008889.md index c01ad3582e..f2807b5e03 100644 --- a/md/UBERON/89/UBERON_0008889.md +++ b/md/UBERON/89/UBERON_0008889.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008889 * *Label* = uterine venous plexus - * *Definition* = The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_venous_plexus] + * *Definition* = The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_venous_plexus ] ## Synonyms - * plexus venosus uterinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_venous_plexus] + * plexus venosus uterinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_venous_plexus ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0008989.md b/md/UBERON/89/UBERON_0008989.md index 899f148928..b36eb3a4f2 100644 --- a/md/UBERON/89/UBERON_0008989.md +++ b/md/UBERON/89/UBERON_0008989.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008989 * *Label* = submocosal esophageal gland - * *Definition* = One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003634[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Esophageal_glands] + * *Definition* = One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003634, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Esophageal_glands ] ## Synonyms - * esophageal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9404] - * glandulae oesophageae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Esophageal_glands] - * mucous gland of submucosa of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9404] + * esophageal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9404 ] + * glandulae oesophageae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Esophageal_glands ] + * mucous gland of submucosa of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9404 ] ## Cross-references * BTO:0003634 * FMA:9404 * SCTID:322749003 - * UMLS:C0227178 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophageal_Gland] + * UMLS:C0227178 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophageal_Gland ] * Wikipedia:Esophageal_glands * http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg * ncithesaurus:Esophageal_Gland @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) and [submucosal gland](../../UBERON/48/UBERON_0011148.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0009089.md b/md/UBERON/89/UBERON_0009089.md index 5f73ace1d0..e9f9beddbc 100644 --- a/md/UBERON/89/UBERON_0009089.md +++ b/md/UBERON/89/UBERON_0009089.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0009589.md b/md/UBERON/89/UBERON_0009589.md index 681836bf95..be26b64044 100644 --- a/md/UBERON/89/UBERON_0009589.md +++ b/md/UBERON/89/UBERON_0009589.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009589 * *Label* = mesenchyme of interdigital region between manual digits 4 and 5 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between manual digits 4 and 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between fingers 4 and 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000855] + * interdigital region between fingers 4 and 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000855 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between manual digits 4 and 5](../../UBERON/35/UBERON_0006035.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0009689.md b/md/UBERON/89/UBERON_0009689.md index 4122d03375..9ba1d428b9 100644 --- a/md/UBERON/89/UBERON_0009689.md +++ b/md/UBERON/89/UBERON_0009689.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009689 * *Label* = anterior inferior cerebellar artery - * *Definition* = A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Anterior_Inferior_Cerebellar_Artery] + * *Definition* = A basilar artery branch that supplies the anterior portion of the inferior surface of the cerebellum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Anterior_Inferior_Cerebellar_Artery ] ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0000587 * FMA:50544 * SCTID:244213006 - * UMLS:C0226245 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Inferior_Cerebellar_Artery] + * UMLS:C0226245 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Inferior_Cerebellar_Artery ] * ncithesaurus:Anterior_Inferior_Cerebellar_Artery ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0009889.md b/md/UBERON/89/UBERON_0009889.md index c8ecabda7b..b9ee86c1a2 100644 --- a/md/UBERON/89/UBERON_0009889.md +++ b/md/UBERON/89/UBERON_0009889.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009889 * *Label* = secondary heart field - * *Definition* = A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003139[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_heart[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:rl] + * *Definition* = A specific region of the lateral mesoderm that will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003139, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_heart, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:rl ] * *Comment* = Taxon notes: "In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [1114]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested" [PMID:17276708] ## Synonyms - * anterior heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17276708] - * anterior/second heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Geisha:syn[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782] - * second heart field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004186] - * SHF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004186] + * anterior heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17276708 ] + * anterior/second heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Geisha:syn, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782 ] + * second heart field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004186 ] + * SHF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004186 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract[PMID:17276708]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0009989.md b/md/UBERON/89/UBERON_0009989.md index 92089c45a4..2b377ea2c2 100644 --- a/md/UBERON/89/UBERON_0009989.md +++ b/md/UBERON/89/UBERON_0009989.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009989 * *Label* = condyle of tibia - * *Definition* = One of the lateral or medial condyles of the tibia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibial_condyle] + * *Definition* = One of the lateral or medial condyles of the tibia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibial_condyle ] ## Synonyms - * tibial condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000899] + * tibial condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000899 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [condyle](../../UBERON/79/UBERON_0009979.md) and [part_of](../../BFO/50/BFO_0000050.md) some [proximal epiphysis of tibia](../../UBERON/72/UBERON_0008772.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Convex articular facet of the distal head of the femur that articulates with the proximal head of the tibia.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0010189.md b/md/UBERON/89/UBERON_0010189.md index 6f7d19211f..1fdf3eb390 100644 --- a/md/UBERON/89/UBERON_0010189.md +++ b/md/UBERON/89/UBERON_0010189.md @@ -7,7 +7,7 @@ ## Synonyms - * right venous valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001762] + * right venous valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001762 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0010289.md b/md/UBERON/89/UBERON_0010289.md index 305f8bb665..939a0fd742 100644 --- a/md/UBERON/89/UBERON_0010289.md +++ b/md/UBERON/89/UBERON_0010289.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010289 * *Label* = scleral cartilage - * *Definition* = Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage] + * *Definition* = Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage ] * *Comment* = Taxon notes: May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera. May not be homologous - see PMID:17051547. cup-shaped in birds. Present in monotremes. Editor notes: consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage. Editors notes: relationship to sclera - overlaps? ## Synonyms - * scleral cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17051547] - * sclerotic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001509] - * scleral cartilaginous cup [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17051547[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * scleral cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17051547 ] + * sclerotic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001509 ] + * scleral cartilaginous cup [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17051547, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Bilaterally paired thin continuous band of cartilage that sagittally encircles the eye.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0010389.md b/md/UBERON/89/UBERON_0010389.md index ed2d736230..70d6310142 100644 --- a/md/UBERON/89/UBERON_0010389.md +++ b/md/UBERON/89/UBERON_0010389.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010389 * *Label* = pterygoid bone - * *Definition* = a bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.websters-online-dictionary.org/definitions/Pterygoid+bone] + * *Definition* = a bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.websters-online-dictionary.org/definitions/Pterygoid+bone ] * *Comment* = Sources vary as to whether the pterygoid corresponds to the pterygoid processes in general, or the latter/inner plate. ## Synonyms - * lamina lateralis (processus pterygoideus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54687[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004452] - * lamina lateralis processi pterygoideus ossis sphenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004452[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral lamina of pterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54687[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004452] - * lateral plate of pterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54687[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004452] - * lateral plate of sphenoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54687[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004452] + * lamina lateralis (processus pterygoideus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54687, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004452 ] + * lamina lateralis processi pterygoideus ossis sphenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004452, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral lamina of pterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54687, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004452 ] + * lateral plate of pterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54687, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004452 ] + * lateral plate of sphenoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54687, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004452 ] * lateral pterygoid plate - * inner plate of pterygoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001471] - * pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000521] + * inner plate of pterygoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001471 ] + * pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000521 ] ## Cross-references @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In tetrapods, the pterygoid is a complex, but relatively stable, paired palatal bone with a number of parts. For the following discussion, it may be best to refer to the images of tetrapod palates at, for example Ornithosuchus, Therapsida, or Palatines. In many tetrapods, it is the largest palatal bone and serves as the main structural support. Most typically, the pterygoids meet extensively on the mid-line of the palate and jointly send a process, the palatal ramus, anteriorly, which may cover the parasphenoid more or less completely. Sometimes this term is used to include the main body of the pterygoid as well. More variably, there are one or two anterolateral processes which go by various names, such as ectopterygoid ramus. In many amniotes, the pterygoid develops a strong transverse process or transverse flange which forms a bar running laterally across the palate. The pterygoid also articulates with (where present) the dorsoventral supports for the palate: the epipterygoid (dorsal) and the basipterygoid process of the braincase. Finally, the pterygoid sends a long, robust quadrate ramus with complex curvature down (posteroventrally) to grasp the quadrate and support the jaw articulation. Basally, in fishes, the terminology tends to be a little different. Refer to the image of the Frasnian actinistian Diplocercides. The pterygoid bone of tetrapods is, roughly speaking, derived from the middle, entopterygoid (see also entry at entopterygoid for alternative definitions) portion of the palatoquadrate complex. The entopterygoid is not actually a part of the palatoquadrate. It is a dermal bone which has replaced the middle section of the primitively continuous endochondral bone of the palatoquadrate, the original upper jaw. In tetrapods, the pterygoid advances further, and also replaces the central part of the posterior, pterygoquadrate unit. This becomes the quadrate ramus. The upper part of this unit, the portion involved in the dorsal and basipterygoid articulations between jaw and braincase, is referred to as the metapterygoid. In tetrapods, most of this region is incorporated into the pterygoid as well, with the exception of the ascending process of the palatoquadrate, which becomes the epipterygoid. Since the anterior braincase articulation is lost in tetrapods, the only remaining sections of the palatoquadrate are the epipterygoid and the quadrate (or, in mammals, the incus). Everything else is either lost or is replaced by the pterygoid[Palaeos] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In tetrapods, the pterygoid is a complex, but relatively stable, paired palatal bone with a number of parts. In many tetrapods, it is the largest palatal bone and serves as the main structural support. Most typically, the pterygoids meet extensively on the mid-line of the palate and jointly send a process, the palatal ramus, anteriorly, which may cover the parasphenoid more or less completely. Sometimes this term is used to include the main body of the pterygoid as well. More variably, there are one or two anterolateral processes which go by various names, such as ectopterygoid ramus. In many amniotes, the pterygoid develops a strong transverse process or transverse flange which forms a bar running laterally across the palate. The pterygoid also articulates with (where present) the dorsoventral supports for the palate: the epipterygoid (dorsal) and the basipterygoid process of the braincase. Finally, the pterygoid sends a long, robust quadrate ramus with complex curvature down (posteroventrally) to grasp the quadrate and support the jaw articulation. The pterygoid bone of tetrapods is, roughly speaking, derived from the middle entopterygoid portion of the palatoquadrate complex of fishes. The entopterygoid is not actually a part of the palatoquadrate. It is a dermal bone which has replaced the middle section of the primitively continuous endochondral bone of the palatoquadrate, the original upper jaw. In tetrapods, the pterygoid advances further, and also replaces the central part of the posterior, pterygoquadrate unit. This becomes the quadrate ramus. The upper part of this unit, the portion involved in the dorsal and basipterygoid articulations between jaw and braincase, is referred to as the metapterygoid. In tetrapods, most of this region is incorporated into the pterygoid as well, with the exception of the ascending process of the palatoquadrate, which becomes the epipterygoid. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0010889.md b/md/UBERON/89/UBERON_0010889.md index b5186025e2..c33cf0b9b7 100644 --- a/md/UBERON/89/UBERON_0010889.md +++ b/md/UBERON/89/UBERON_0010889.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010889 * *Label* = ectethmoid - * *Definition* = either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/ectethmoid] + * *Definition* = either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/ectethmoid ] * *Comment* = Taxon notes: In avians, the mesethmoid supports upper beak formation ## Synonyms - * dorsal nasal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21270050] + * dorsal nasal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21270050 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0010989.md b/md/UBERON/89/UBERON_0010989.md index bcda83444e..1970226269 100644 --- a/md/UBERON/89/UBERON_0010989.md +++ b/md/UBERON/89/UBERON_0010989.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010989 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0011189.md b/md/UBERON/89/UBERON_0011189.md index efdbde5dc9..4b146e4370 100644 --- a/md/UBERON/89/UBERON_0011189.md +++ b/md/UBERON/89/UBERON_0011189.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011189 * *Label* = lamina propria of large intestine - * *Definition* = A lamina propria that is part of a large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lamina propria that is part of a large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * lamina propria of mucosa of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15654] + * lamina propria of mucosa of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15654 ] * large intestinal lamina propria - * large intestine lamina propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15654] + * large intestine lamina propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15654 ] ## Cross-references * FMA:15654 - * UMLS:C1708644 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Lamina_Propria] + * UMLS:C1708644 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Lamina_Propria ] * ncithesaurus:Large_Intestinal_Lamina_Propria ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lamina propria](../../UBERON/30/UBERON_0000030.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0011289.md b/md/UBERON/89/UBERON_0011289.md index 1362d03975..f28517c4b4 100644 --- a/md/UBERON/89/UBERON_0011289.md +++ b/md/UBERON/89/UBERON_0011289.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011289 * *Label* = pharyngobasilar fascia - * *Definition* = The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngobasilar_fascia] + * *Definition* = The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngobasilar_fascia ] ## Synonyms - * pharyngeal aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55074] - * pharyngeal aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pharyngobasilar_fascia] + * pharyngeal aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55074 ] + * pharyngeal aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pharyngobasilar_fascia ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [aponeurosis](../../UBERON/14/UBERON_0006614.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0011389.md b/md/UBERON/89/UBERON_0011389.md index d9d10f100c..6fafeb0033 100644 --- a/md/UBERON/89/UBERON_0011389.md +++ b/md/UBERON/89/UBERON_0011389.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011389 * *Label* = bulbospongiosus muscle - * *Definition* = The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:245[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] + * *Definition* = The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:245, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] ## Synonyms - * bulbospongiosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19729] - * musculus bulbospongiosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * bulbocavernosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] - * bulbocavernosus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] - * bulbocavernous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] - * bulbospongiosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbospongiosus_muscle] + * bulbospongiosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19729 ] + * musculus bulbospongiosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * bulbocavernosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] + * bulbocavernosus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] + * bulbocavernous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] + * bulbospongiosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbospongiosus_muscle ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0011589.md b/md/UBERON/89/UBERON_0011589.md index 46fe526844..b23ba6393d 100644 --- a/md/UBERON/89/UBERON_0011589.md +++ b/md/UBERON/89/UBERON_0011589.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011589 * *Label* = non-mineralized cartilage tissue - * *Definition* = Cartilage tissue that is not mineralized. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000089[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Cartilage tissue that is not mineralized. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000089, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = Editor notes: add developmental relationships; add disjointness axiom ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0012289.md b/md/UBERON/89/UBERON_0012289.md index 1771e1c58e..b82c33fd73 100644 --- a/md/UBERON/89/UBERON_0012289.md +++ b/md/UBERON/89/UBERON_0012289.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012289 * *Label* = fused tarsals 2 and 3 - * *Definition* = A tarsal bone that is formed from the fusion of the 2nd and 3rd tarsal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:skansa] + * *Definition* = A tarsal bone that is formed from the fusion of the 2nd and 3rd tarsal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:skansa ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_fused_element](../../RO/74/RO_0002374.md) some [distal tarsal bone 2](../../UBERON/53/UBERON_0001453.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [distal tarsal bone 3](../../UBERON/54/UBERON_0001454.md) and [tarsal bone](../../UBERON/47/UBERON_0001447.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012289 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0012489.md b/md/UBERON/89/UBERON_0012489.md index 2699caa011..04717fb4ca 100644 --- a/md/UBERON/89/UBERON_0012489.md +++ b/md/UBERON/89/UBERON_0012489.md @@ -6,11 +6,11 @@ ## Synonyms - * colonic muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14986] - * muscular coat of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14986] - * muscular layer of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14986] - * muscularis externa of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14986] - * tunica muscularis coli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * colonic muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14986 ] + * muscular coat of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14986 ] + * muscular layer of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14986 ] + * muscularis externa of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14986 ] + * tunica muscularis coli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0013189.md b/md/UBERON/89/UBERON_0013189.md index 72b14e6f87..15c9212db9 100644 --- a/md/UBERON/89/UBERON_0013189.md +++ b/md/UBERON/89/UBERON_0013189.md @@ -8,7 +8,7 @@ ## Synonyms * junk - * junk bodies [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * junk bodies [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * junk body * junk organ @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013189 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0013489.md b/md/UBERON/89/UBERON_0013489.md index 4415e87fa1..1736c7485a 100644 --- a/md/UBERON/89/UBERON_0013489.md +++ b/md/UBERON/89/UBERON_0013489.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013489 * *Label* = superficial cervical fascia - * *Definition* = Superficial cervical fascia is a thin layer of subcutaneous connective tissue that lies between the dermis of the skin and the deep cervical fascia. It contains the platysma, cutaneous nerves, blood, and lymphatic vessels. It also contains a varying amount of fat, which is its distinguishing characteristic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_cervical_fascia] + * *Definition* = Superficial cervical fascia is a thin layer of subcutaneous connective tissue that lies between the dermis of the skin and the deep cervical fascia. It contains the platysma, cutaneous nerves, blood, and lymphatic vessels. It also contains a varying amount of fat, which is its distinguishing characteristic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_cervical_fascia ] * *Comment* = It is considered by some to be a part of the Panniculus adiposus, and not true fascia[WP] ## Synonyms - * superficial cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57805] - * superficial layer of cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57805] - * superficial layer of deep cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:57805] + * superficial cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57805 ] + * superficial layer of cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57805 ] + * superficial layer of deep cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:57805 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0013589.md b/md/UBERON/89/UBERON_0013589.md index a5d8409a68..2c321ca278 100644 --- a/md/UBERON/89/UBERON_0013589.md +++ b/md/UBERON/89/UBERON_0013589.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013589 * *Label* = koniocortex - * *Definition* = Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 13 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=47303] + * *Definition* = Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 13 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=47303 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0013689.md b/md/UBERON/89/UBERON_0013689.md index da213f2cd0..699e55ebc5 100644 --- a/md/UBERON/89/UBERON_0013689.md +++ b/md/UBERON/89/UBERON_0013689.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013689 * *Label* = appendix lymphoid tissue - * *Definition* = Lymphoid tissue located in the appendix. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-1268] + * *Definition* = Lymphoid tissue located in the appendix. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-1268 ] ## Synonyms - * lymphatic tissue of appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lymphatic tissue of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * appendix lymphoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-1268] + * lymphatic tissue of appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lymphatic tissue of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * appendix lymphoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-1268 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lymphoid tissue](../../UBERON/44/UBERON_0001744.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014389.md b/md/UBERON/89/UBERON_0014389.md index 06e2a43d14..e7a750eda1 100644 --- a/md/UBERON/89/UBERON_0014389.md +++ b/md/UBERON/89/UBERON_0014389.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014389 * *Label* = gustatory papilla of tongue - * *Definition* = A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006256] + * *Definition* = A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006256 ] ## Synonyms * gustatory papilla * taste papilla - * gustatory papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * taste papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * gustatory papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * taste papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [taste bud](../../UBERON/27/UBERON_0001727.md) and [papilla of tongue](../../UBERON/26/UBERON_0001726.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014489.md b/md/UBERON/89/UBERON_0014489.md index fdf8b4f84e..b69c213251 100644 --- a/md/UBERON/89/UBERON_0014489.md +++ b/md/UBERON/89/UBERON_0014489.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014489 * *Label* = middle phalanx of digit 3 - * *Definition* = A middle phalanx that is part of a digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A middle phalanx that is part of a digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 3](../../UBERON/50/UBERON_0006050.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014489 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014589.md b/md/UBERON/89/UBERON_0014589.md index 1b974d797a..e5ffb8af0d 100644 --- a/md/UBERON/89/UBERON_0014589.md +++ b/md/UBERON/89/UBERON_0014589.md @@ -6,10 +6,10 @@ ## Synonyms - * anterior nucleus of hypothalamus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1109[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * AHNa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1109[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior hypothalamic nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNa] - * anterior hypothalamic nucleus, anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNa] + * anterior nucleus of hypothalamus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1109, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * AHNa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1109, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior hypothalamic nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNa ] + * anterior hypothalamic nucleus, anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNa ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014589 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014689.md b/md/UBERON/89/UBERON_0014689.md index 9dac7b3b33..90f1140510 100644 --- a/md/UBERON/89/UBERON_0014689.md +++ b/md/UBERON/89/UBERON_0014689.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014689 * *Label* = middle temporal sulcus - * *Definition* = A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Middle_Temporal_Sulcus] + * *Definition* = A groove or cleft that divides the outer surface of the temporal lobe running in the same direction but at a lower level to the superior temporal sulcus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Middle_Temporal_Sulcus ] ## Synonyms - * middle (medial) temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mts] + * middle (medial) temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mts ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014689 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014789.md b/md/UBERON/89/UBERON_0014789.md index a6698447d1..a0ea33fced 100644 --- a/md/UBERON/89/UBERON_0014789.md +++ b/md/UBERON/89/UBERON_0014789.md @@ -6,7 +6,7 @@ ## Synonyms - * embryonic umbilical vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000400] + * embryonic umbilical vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000400 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vein passing through the umbilical cord to the fetus and returning the purified and nutrient blood from the placenta[VHOG:0000400]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014789 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0014889.md b/md/UBERON/89/UBERON_0014889.md index 1f99bed554..9f092ebe3e 100644 --- a/md/UBERON/89/UBERON_0014889.md +++ b/md/UBERON/89/UBERON_0014889.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014889 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_0015089.md b/md/UBERON/89/UBERON_0015089.md index 0453480fb2..4ae59a6e15 100644 --- a/md/UBERON/89/UBERON_0015089.md +++ b/md/UBERON/89/UBERON_0015089.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal carpal bone 2 endochondral element](../../UBERON/87/UBERON_0015087.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015089 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2000089.md b/md/UBERON/89/UBERON_2000089.md index 9d3b602771..0dfd3cbd75 100644 --- a/md/UBERON/89/UBERON_2000089.md +++ b/md/UBERON/89/UBERON_2000089.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000089 * *Label* = actinotrichium - * *Definition* = Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PHENOSCAPE:pm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/129] + * *Definition* = Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PHENOSCAPE:pm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/129 ] * *Comment* = Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): "Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; G?raudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (G?raudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (G?raudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001)." ## Synonyms - * actinotrichia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000089[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * actinotrichia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000089, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -34,7 +34,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2000289.md b/md/UBERON/89/UBERON_2000289.md index ed4d84f5ed..6b9200c7b9 100644 --- a/md/UBERON/89/UBERON_2000289.md +++ b/md/UBERON/89/UBERON_2000289.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000289 * *Label* = preopercle horizontal limb - * *Definition* = A dermal bone that is the lower, horizontal portion of the preopercle bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = A dermal bone that is the lower, horizontal portion of the preopercle bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * preopercle horizontal arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000289] - * preopercle lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000289] + * preopercle horizontal arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000289 ] + * preopercle lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000289 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2000389.md b/md/UBERON/89/UBERON_2000389.md index baef1b97ec..54582b0d82 100644 --- a/md/UBERON/89/UBERON_2000389.md +++ b/md/UBERON/89/UBERON_2000389.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2000589.md b/md/UBERON/89/UBERON_2000589.md index 80f0e2c7ed..d96c2c59fc 100644 --- a/md/UBERON/89/UBERON_2000589.md +++ b/md/UBERON/89/UBERON_2000589.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2000689.md b/md/UBERON/89/UBERON_2000689.md index 6f0a567f99..c40e35fd69 100644 --- a/md/UBERON/89/UBERON_2000689.md +++ b/md/UBERON/89/UBERON_2000689.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_2000989.md b/md/UBERON/89/UBERON_2000989.md index f3654e5579..f7af766cd5 100644 --- a/md/UBERON/89/UBERON_2000989.md +++ b/md/UBERON/89/UBERON_2000989.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000989 * *Label* = hypaxial region somite 8 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001089.md b/md/UBERON/89/UBERON_2001089.md index 89fc63f607..4f8050547f 100644 --- a/md/UBERON/89/UBERON_2001089.md +++ b/md/UBERON/89/UBERON_2001089.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001389.md b/md/UBERON/89/UBERON_2001389.md index d10ac57c82..34c6e05057 100644 --- a/md/UBERON/89/UBERON_2001389.md +++ b/md/UBERON/89/UBERON_2001389.md @@ -9,9 +9,9 @@ * epidermal cap of fin * wound epidermis of fin * wound epithelium of fin - * epidermal cap [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001389] - * wound epidermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001389] - * wound epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001389] + * epidermal cap [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001389 ] + * wound epidermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001389 ] + * wound epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001389 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [regenerating fin/limb](../../UBERON/69/UBERON_2001269.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001389 + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001589.md b/md/UBERON/89/UBERON_2001589.md index 76d40a5ac3..9bf432418c 100644 --- a/md/UBERON/89/UBERON_2001589.md +++ b/md/UBERON/89/UBERON_2001589.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001589 * *Label* = propterygium - * *Definition* = The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The cartilaginous propterygium may partially ossify and fuse to the base of the pectoral hemilepidotrichium 1 in teleosts, but remains as a separate element in non-teleostean fishes. ## Synonyms - * pectoral propterygium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001589] + * pectoral propterygium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001589 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001689.md b/md/UBERON/89/UBERON_2001689.md index 07aed47fd2..9c62152979 100644 --- a/md/UBERON/89/UBERON_2001689.md +++ b/md/UBERON/89/UBERON_2001689.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001689 * *Label* = pterygoquadrate cartilage - * *Definition* = pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001789.md b/md/UBERON/89/UBERON_2001789.md index fb3f75a1c0..a75010bbda 100644 --- a/md/UBERON/89/UBERON_2001789.md +++ b/md/UBERON/89/UBERON_2001789.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001789 * *Label* = dorsal fin spine 1 - * *Definition* = Dorsal-fin lepidotrichium 1 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with first (anteriormost) dorsal-fin pterygiophore. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dorsal-fin lepidotrichium 1 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with first (anteriormost) dorsal-fin pterygiophore. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal spine 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001789] + * dorsal spine 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001789 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001889.md b/md/UBERON/89/UBERON_2001889.md index 5e1b5b3ce0..9797f46ea0 100644 --- a/md/UBERON/89/UBERON_2001889.md +++ b/md/UBERON/89/UBERON_2001889.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001889 * *Label* = supraneural 1 cartilage - * *Definition* = Postcranial axial cartilage located dorsal to vertebra 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Postcranial axial cartilage located dorsal to vertebra 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2001989.md b/md/UBERON/89/UBERON_2001989.md index 00bd5f3c82..fcd4f813a8 100644 --- a/md/UBERON/89/UBERON_2001989.md +++ b/md/UBERON/89/UBERON_2001989.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001989 * *Label* = mandibular-hyoid median cartilage - * *Definition* = Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Schaefer, S. 1990. (Anatomy and relationships of the scoloplacid catfishes. Proc. Acad. Nat. Sci. Phil. 142: 167-210) described this structure in certain catfishes and applied the name hyomandibular cartilage. To avoid possible confusion of this structure with the hyomandibular cartilage (or bone) of the suspensorium, the term mandibular-hyoid median cartilage is used here. ## Synonyms - * hyomandibular cartilage sensu Schaefer (1990) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001989] + * hyomandibular cartilage sensu Schaefer (1990) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001989 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2002089.md b/md/UBERON/89/UBERON_2002089.md index e9855f821c..5342885753 100644 --- a/md/UBERON/89/UBERON_2002089.md +++ b/md/UBERON/89/UBERON_2002089.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002089 * *Label* = gular plate - * *Definition* = Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:ga_tg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:ga_tg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = A gular plate is absent in most extant teleosts. ## Synonyms - * median gular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002089] + * median gular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002089 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2002289.md b/md/UBERON/89/UBERON_2002289.md index 57d840bf50..a090821dae 100644 --- a/md/UBERON/89/UBERON_2002289.md +++ b/md/UBERON/89/UBERON_2002289.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002289 * *Label* = obsolete sclera - * *Definition* = Multi-tissue structure that composes the opaque fibrous outer layer of the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-050701-15] + * *Definition* = Multi-tissue structure that composes the opaque fibrous outer layer of the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-050701-15 ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001773 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_2005089.md b/md/UBERON/89/UBERON_2005089.md index 1116e23a41..5af3e16e1f 100644 --- a/md/UBERON/89/UBERON_2005089.md +++ b/md/UBERON/89/UBERON_2005089.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005089 * *Label* = swim bladder artery - * *Definition* = An elaborate set of vessels that branche off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. Isogai et al. 2001. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = An elaborate set of vessels that branche off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. Isogai et al. 2001. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * SBA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005089] + * SBA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005089 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_2005189.md b/md/UBERON/89/UBERON_2005189.md index 3fdf6cb28f..289ab1a298 100644 --- a/md/UBERON/89/UBERON_2005189.md +++ b/md/UBERON/89/UBERON_2005189.md @@ -6,7 +6,7 @@ ## Synonyms - * middle rostral 2 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005189] + * middle rostral 2 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005189 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_3000089.md b/md/UBERON/89/UBERON_3000089.md index 7aa7776249..e128f0cbcc 100644 --- a/md/UBERON/89/UBERON_3000089.md +++ b/md/UBERON/89/UBERON_3000089.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000089 * *Label* = cavum principale - * *Definition* = The largest part of the nasal cavity, containing the olfactory epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP[rdf-schema#comment](../../nt/rdf-schema#comment.md) = + AAO:EJS] + * *Definition* = The largest part of the nasal cavity, containing the olfactory epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP, [rdf-schema#comment](../../nt/rdf-schema#comment.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3000189.md b/md/UBERON/89/UBERON_3000189.md index 24119e2966..972cd04ae6 100644 --- a/md/UBERON/89/UBERON_3000189.md +++ b/md/UBERON/89/UBERON_3000189.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3000389.md b/md/UBERON/89/UBERON_3000389.md index 2d18268d92..0094649bd3 100644 --- a/md/UBERON/89/UBERON_3000389.md +++ b/md/UBERON/89/UBERON_3000389.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000389 * *Label* = paries nasi - * *Definition* = Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3000689.md b/md/UBERON/89/UBERON_3000689.md index 449e1d3720..274cd790ac 100644 --- a/md/UBERON/89/UBERON_3000689.md +++ b/md/UBERON/89/UBERON_3000689.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000689 * *Label* = prominentia apicalis ventralis - * *Definition* = Posterior (cardiac) end of the arytenoid cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior (cardiac) end of the arytenoid cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * prominentia apicalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000689] + * prominentia apicalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000689 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3000989.md b/md/UBERON/89/UBERON_3000989.md index 839ba96da3..6fb61b1851 100644 --- a/md/UBERON/89/UBERON_3000989.md +++ b/md/UBERON/89/UBERON_3000989.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3010089.md b/md/UBERON/89/UBERON_3010089.md index f4278b2f3a..2249ab3f60 100644 --- a/md/UBERON/89/UBERON_3010089.md +++ b/md/UBERON/89/UBERON_3010089.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010089 * *Label* = M. extensor cruris brevis - * *Definition* = Originates by a slender tendon from the ventral surface of the medial condyle of the femur and passes over the knee to insert as a fleshy belly on the ventro-lateral surface of the tibiofibula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates by a slender tendon from the ventral surface of the medial condyle of the femur and passes over the knee to insert as a fleshy belly on the ventro-lateral surface of the tibiofibula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3010189.md b/md/UBERON/89/UBERON_3010189.md index d8aff39660..493ed10a4d 100644 --- a/md/UBERON/89/UBERON_3010189.md +++ b/md/UBERON/89/UBERON_3010189.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3010289.md b/md/UBERON/89/UBERON_3010289.md index e6447afa04..038fe73b87 100644 --- a/md/UBERON/89/UBERON_3010289.md +++ b/md/UBERON/89/UBERON_3010289.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000477 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/89/UBERON_3010489.md b/md/UBERON/89/UBERON_3010489.md index 9f466ac70d..b28f6ac0cb 100644 --- a/md/UBERON/89/UBERON_3010489.md +++ b/md/UBERON/89/UBERON_3010489.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010489 * *Label* = muscular artery - * *Definition* = Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_3010589.md b/md/UBERON/89/UBERON_3010589.md index 61c9ece31b..cf0839b374 100644 --- a/md/UBERON/89/UBERON_3010589.md +++ b/md/UBERON/89/UBERON_3010589.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010589 * *Label* = cloacal papilla - * *Definition* = A small, ridge-like projection from the antero-ventral wall of the cloacal chamber. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A small, ridge-like projection from the antero-ventral wall of the cloacal chamber. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_4200089.md b/md/UBERON/89/UBERON_4200089.md index 98ca59f26c..5c05e0a280 100644 --- a/md/UBERON/89/UBERON_4200089.md +++ b/md/UBERON/89/UBERON_4200089.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/89/UBERON_4200189.md b/md/UBERON/89/UBERON_4200189.md index a1a0101615..540249d994 100644 --- a/md/UBERON/89/UBERON_4200189.md +++ b/md/UBERON/89/UBERON_4200189.md @@ -26,7 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0000090.md b/md/UBERON/90/UBERON_0000090.md index ee71cdb649..b3a7beb903 100644 --- a/md/UBERON/90/UBERON_0000090.md +++ b/md/UBERON/90/UBERON_0000090.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000090 * *Label* = blastocele - * *Definition* = fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Blastocele] + * *Definition* = fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Blastocele ] ## Synonyms * blastocoele - * blastocoelic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000175] + * blastocoelic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000175 ] * blastocyst cavity * cleavage cavity * segmentation cavity - * blastocoel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000811] + * blastocoel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000811 ] ## Cross-references @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the development of many animals, a hollow blastula stage is formed during early embryogenesis. Such a hollow blastula is even regarded as an autapomorphy of Metazoa and is present already in some sponges.[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0000390.md b/md/UBERON/90/UBERON_0000390.md index 21141f17b9..dcd0ed8b85 100644 --- a/md/UBERON/90/UBERON_0000390.md +++ b/md/UBERON/90/UBERON_0000390.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000390 * *Label* = lens nucleus - * *Definition* = The core of the crystalline lens, surrounded by the cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001633] + * *Definition* = The core of the crystalline lens, surrounded by the cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001633 ] * *Comment* = editor note: needs checked; cf nucleus in GO ## Synonyms - * nucleus of lens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58971] + * nucleus of lens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58971 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0000490.md b/md/UBERON/90/UBERON_0000490.md index 1bcb88e840..bb442de479 100644 --- a/md/UBERON/90/UBERON_0000490.md +++ b/md/UBERON/90/UBERON_0000490.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000490 * *Label* = unilaminar epithelium - * *Definition* = Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45561] + * *Definition* = Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45561 ] * *Comment* = AO/editor notes: consider adding disjointness axiom between unilaminar and multilaminar - but note that this will render EHDAA2:0003244 (chorionic trophoblast) unsatisfiable ## Synonyms - * simple epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:45561] + * simple epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:45561 ] ## Cross-references @@ -22,7 +22,7 @@ * HAO:0000073 * SCTID:309043004 * TAO:0001495 - * UMLS:C0682574 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Simple_Epithelium] + * UMLS:C0682574 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Simple_Epithelium ] * XAO:0004007 * ZFA:0001495 * ncithesaurus:Simple_Epithelium @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of a single layer of epithelial cells.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of a single layer of epithelial cells.[CARO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Epithelium that consists of a single layer of epithelial cells.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0000990.md b/md/UBERON/90/UBERON_0000990.md index 61ccd45242..54d67b5203 100644 --- a/md/UBERON/90/UBERON_0000990.md +++ b/md/UBERON/90/UBERON_0000990.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000990 * *Label* = reproductive system - * *Definition* = Anatomical system that has as its parts the organs concerned with reproduction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reproductive_system] + * *Definition* = Anatomical system that has as its parts the organs concerned with reproduction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reproductive_system ] * *Comment* = Editor notes: consider splitting genitalia from reproductive system ## Synonyms - * Geschlechtsorgan [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000081] - * animal reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000081] + * Geschlechtsorgan [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000081 ] + * animal reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000081 ] * genital system - * genitalia [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * organa genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000081] - * reproductive tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000081] - * systemata genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reproductive_system[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * genitalia [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * organa genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000081 ] + * reproductive tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000081 ] + * systemata genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reproductive_system, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,7 +37,7 @@ * OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA * SCTID:278875001 * TAO:0000632 - * UMLS:C1261210 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Reproductive_System] + * UMLS:C1261210 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Reproductive_System ] * VHOG:0000182 * WBbt:0005747 * Wikipedia:Reproductive_system @@ -63,7 +63,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical system](../../UBERON/67/UBERON_0000467.md) and [capable of part of](../../RO/16/RO_0002216.md) some [reproduction](../../GO/03/GO_0000003.md) ## Other Logical Axioms @@ -74,8 +74,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Arguably, one of the most important aspects of urbilaterian organogenesis would have been gonadogenesis, since Urbilateria must have successfully generated gametes and developed a strategy for extrusion and fertilization, in order to be the ancestor of all living Bilateria.[well established][VHOG] * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_75572 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001090.md b/md/UBERON/90/UBERON_0001090.md index ab03d61de1..460cac95fc 100644 --- a/md/UBERON/90/UBERON_0001090.md +++ b/md/UBERON/90/UBERON_0001090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001090 * *Label* = synovial fluid - * *Definition* = Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Synovial_fluid] + * *Definition* = Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Synovial_fluid ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -20,7 +20,7 @@ * MA:0002544 * MESH:A02.835.583.443.800.800 * TAO:0005154 - * UMLS:C0039097 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Synovial_Fluid] + * UMLS:C0039097 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Synovial_Fluid ] * Wikipedia:Synovial_fluid * ZFA:0005154 * galen:SynovialFluid @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [synovial cavity of joint](../../UBERON/17/UBERON_0007617.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of organism substance that is a clear fluid that occupies the space in synovial joints.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001190.md b/md/UBERON/90/UBERON_0001190.md index a21757975c..d9e96bf9cb 100644 --- a/md/UBERON/90/UBERON_0001190.md +++ b/md/UBERON/90/UBERON_0001190.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001190 * *Label* = ovarian artery - * *Definition* = An artery that supplies an ovary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An artery that supplies an ovary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * ovarian arterial tree - * arteria ovarica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovarian_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria ovarica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovarian_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002012 * OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA * SCTID:244280002 - * UMLS:C0226411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Artery] + * UMLS:C0226411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Artery ] * Wikipedia:Ovarian_artery * http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png * http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdomiproperty_value external_definitioncavity. It can be found in the suspensory ligament of the ovary. [WP]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001290.md b/md/UBERON/90/UBERON_0001290.md index f7b6d20be5..c2a2674381 100644 --- a/md/UBERON/90/UBERON_0001290.md +++ b/md/UBERON/90/UBERON_0001290.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001290 * *Label* = proximal straight tubule - * *Definition* = part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000055[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Proximal_straight_tubule] + * *Definition* = part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000055, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Proximal_straight_tubule ] * *Comment* = TODO - is S3 exactly coincident with PST? Check also relationship to DL. todo - ensure relationships work across species (loop of Henle) ## Synonyms - * S3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072020] + * S3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072020 ] * thick descending limb of proximal tubule * tubulus rectus proximalis * pars recta - * pars recta tubuli renalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000055] - * proximal tubule segment 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002614] - * segment 3 of proximal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29661] + * pars recta tubuli renalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000055 ] + * proximal tubule segment 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002614 ] + * segment 3 of proximal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29661 ] ## Cross-references @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of the renal tubule which is just posterior to the proximal convoluted tubule.[TAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005166 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001390.md b/md/UBERON/90/UBERON_0001390.md index d8a39ac851..41f66d1d13 100644 --- a/md/UBERON/90/UBERON_0001390.md +++ b/md/UBERON/90/UBERON_0001390.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001390 * *Label* = sural artery - * *Definition* = The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sural_artery] + * *Definition* = The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sural_artery ] * *Comment* = TODO: check NCITA class ## Synonyms @@ -14,7 +14,7 @@ * FMA:22570 * MA:0002058 * SCTID:302693002 - * UMLS:C0226464 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Sural_Artery] + * UMLS:C0226464 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Sural_Artery ] * Wikipedia:Sural_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Gray551.png/200px-Gray551.png * ncithesaurus:External_Sural_Artery @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001490.md b/md/UBERON/90/UBERON_0001490.md index d3e6f2bb3c..bdd698fa28 100644 --- a/md/UBERON/90/UBERON_0001490.md +++ b/md/UBERON/90/UBERON_0001490.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001490 * *Label* = elbow joint - * *Definition* = A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Elbow[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Elbow, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * articulatio cubiti [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cubital region joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of cubital region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of elbow [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * articulatio cubiti [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cubital region joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of cubital region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of elbow [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0000451 * MESH:A02.835.583.290 * SCTID:182169008 - * UMLS:C0013770 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Elbow_Joint] + * UMLS:C0013770 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Elbow_Joint ] * VHOG:0000997 * Wikipedia:Elbow * galen:ElbowJoint @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [forelimb zeugopod skeleton](../../UBERON/03/UBERON_0010703.md) and [connects](../../ts/core#connects.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001590.md b/md/UBERON/90/UBERON_0001590.md index 6b38b1414f..2ae6176916 100644 --- a/md/UBERON/90/UBERON_0001590.md +++ b/md/UBERON/90/UBERON_0001590.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001590 * *Label* = pericardiacophrenic vein - * *Definition* = Vena comitans of the pericardiacophrenic arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardiacophrenic_veins] + * *Definition* = Vena comitans of the pericardiacophrenic arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardiacophrenic_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * venae pericardiacophrenicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pericardiacophrenic_veins[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae pericardiacophrenicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pericardiacophrenic_veins, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:4742 * MA:0002187 * SCTID:361626007 - * UMLS:C0501112 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pericardiacophrenic_Vein] + * UMLS:C0501112 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pericardiacophrenic_Vein ] * Wikipedia:Pericardiacophrenic_veins * http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001690.md b/md/UBERON/90/UBERON_0001690.md index 0d80156536..f1ee32b8e6 100644 --- a/md/UBERON/90/UBERON_0001690.md +++ b/md/UBERON/90/UBERON_0001690.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001690 * *Label* = ear - * *Definition* = Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0042471[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ear] + * *Definition* = Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0042471, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ear ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * auditory apparatus - * auris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000368] + * auris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000368 ] ## Cross-references @@ -31,9 +31,9 @@ * OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA * OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA * SCTID:1910005 - * UMLS:C0013443 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1062] - * UMLS:C0013443 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ear] - * UMLS:C0521421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1062] + * UMLS:C0013443 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1062 ] + * UMLS:C0013443 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ear ] + * UMLS:C0521421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1062 ] * VHOG:0000330 * Wikipedia:Ear * XAO:0000189 @@ -68,8 +68,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Both vertebrate and invertebrate auditory organs are thought to have evolved from primitive mechanosensors, but the nature of the ancestral structure and the evolutionary trajectories followed in distinct animal lineages remain unknown. In particular, we do not know how many types of mechanosensor existed in the protostome-deuterostome ancestor from which insects and vertebrates evolved or whether the PDA had an auditory organ.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = auricular * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001790.md b/md/UBERON/90/UBERON_0001790.md index 22a25dea59..7b8434e2a7 100644 --- a/md/UBERON/90/UBERON_0001790.md +++ b/md/UBERON/90/UBERON_0001790.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001790 * *Label* = outer plexiform layer of retina - * *Definition* = The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001330] + * *Definition* = The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001330 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * outer plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003174] + * outer plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003174 ] * retina outer plexiform layer * retinal outer plexiform layer * stratum plexiforme externum - * external plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003174] + * external plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003174 ] * OPL - * retina, outer plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Ropl] + * retina, outer plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Ropl ] ## Cross-references @@ -24,7 +24,7 @@ * MA:0001316 * SCTID:280684007 * TAO:0001330 - * UMLS:C0229217 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Outer_Plexiform_Layer] + * UMLS:C0229217 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Outer_Plexiform_Layer ] * VHOG:0001171 * XAO:0003218 * ZFA:0001330 @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001890.md b/md/UBERON/90/UBERON_0001890.md index fee4614ad7..4e082b2bc1 100644 --- a/md/UBERON/90/UBERON_0001890.md +++ b/md/UBERON/90/UBERON_0001890.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001890 * *Label* = forebrain - * *Definition* = The most anterior region the brain including both the telencephalon and diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Forebrain[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-576] + * *Definition* = The most anterior region the brain including both the telencephalon and diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Forebrain, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-576 ] ## Synonyms - * FB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1509[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * FB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1509, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * prosencephalon ## Cross-references @@ -27,11 +27,11 @@ * MESH:A08.186.211.730 * MIAA:0000105 * NIF_GrossAnatomy:birnlex_1509 - * NeuroNames:27 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1509] + * NeuroNames:27 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1509 ] * SCTID:362291003 * TAO:0000109 - * UMLS:C0085140 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1509] - * UMLS:C0085140 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fore-Brain] + * UMLS:C0085140 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1509 ] + * UMLS:C0085140 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fore-Brain ] * VHOG:0000383 * Wikipedia:Forebrain * XAO:0000011 @@ -67,8 +67,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In craniate embryos, neural expression of Distal-less-related genes is exclusively in the forebrain (...). Because the major neural expression domain of amphioxus AmphiDll is in the anterior three-fourths of the cerebral vesicle, we suggest that this region of the neural tube is homologous to parts of the craniate forebrain. This conclusion is strongly supported by three-dimensional, computer-assisted reconstruction of the neural tube of amphioxus based on serial transmission electron microscopy. At the neuroanatomical level, a number of detailed homologies are indicated between the anterior three-fourths of the amphioxus cerebral vesicle and the diencephalic region of the craniate forebrain. If one assumes that the amphioxus condition fairly represents the nervous system of the proximate ancestor of the craniates, one can suggest that they evolved from a creature that had the beginnings of a forebrain.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = prosencephalic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0001990.md b/md/UBERON/90/UBERON_0001990.md index cdca228da9..2f4aa971c9 100644 --- a/md/UBERON/90/UBERON_0001990.md +++ b/md/UBERON/90/UBERON_0001990.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001990 * *Label* = middle cervical ganglion - * *Definition* = The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cervical_ganglion] + * *Definition* = The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cervical_ganglion ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * middle cervical sympathetic ganglion - * ganglion cervicale medium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000359] - * ganglion cervicale medium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_cervical_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ganglion cervicale medium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000359 ] + * ganglion cervicale medium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_cervical_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0001155 * RETIRED_EHDAA2:0001180 * SCTID:279279005 - * UMLS:C0228999 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Cervical_Ganglion] + * UMLS:C0228999 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Cervical_Ganglion ] * Wikipedia:Middle_cervical_ganglion * http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002090.md b/md/UBERON/90/UBERON_0002090.md index f3a68eda11..597262b0cf 100644 --- a/md/UBERON/90/UBERON_0002090.md +++ b/md/UBERON/90/UBERON_0002090.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002090 * *Label* = postcranial axial skeleton - * *Definition* = The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000317[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834] + * *Definition* = The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000317, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834 ] * *Comment* = previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed. ## Synonyms * post-cranial axial skeleton - * axial skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71221[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000008] + * axial skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71221, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000008 ] ## Cross-references @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The post-cranial structural components forming the long axis of the vertebrate body; usually consists of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The axial musculoskeletal system represents the plesiomorphic locomotor engine of the vertebrate body, playing a central role in locomotion. In craniates, the evolution of the postcranial skeleton is characterized by two major transformations. First, the axial skeleton became increasingly functionally and morphologically regionalized. Second, the axial-based locomotion plesiomorphic for craniates became progressively appendage-based with the evolution of extremities in tetrapods.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002190.md b/md/UBERON/90/UBERON_0002190.md index 08736d7fd6..257d0ac917 100644 --- a/md/UBERON/90/UBERON_0002190.md +++ b/md/UBERON/90/UBERON_0002190.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002190 * *Label* = subcutaneous adipose tissue - * *Definition* = A portion of adipose tissue that is part of the hypodermis, beneath the dermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A portion of adipose tissue that is part of the hypodermis, beneath the dermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * fatty layer of subcutaneous tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74315] - * hypodermis fat layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011156] - * panniculus adiposus (tela subcutanea) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * panniculus adiposus telae subcutaneae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subcutaneous fat layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011156] - * panniculus adiposus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011156] - * subcutaneous fat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004042] + * fatty layer of subcutaneous tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74315 ] + * hypodermis fat layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011156 ] + * panniculus adiposus (tela subcutanea) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * panniculus adiposus telae subcutaneae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subcutaneous fat layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011156 ] + * panniculus adiposus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011156 ] + * subcutaneous fat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004042 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adipose tissue](../../UBERON/13/UBERON_0001013.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypodermis](../../UBERON/72/UBERON_0002072.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the superficial portion of the subcutaneous tissue which is specialized for fat storage[MP:0011156] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008875 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002290.md b/md/UBERON/90/UBERON_0002290.md index ca67cd1a5b..24d3505447 100644 --- a/md/UBERON/90/UBERON_0002290.md +++ b/md/UBERON/90/UBERON_0002290.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002290 * *Label* = choroid plexus of fourth ventricle - * *Definition* = A choroid plexus that is part of a fourth ventricle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus that is part of a fourth ventricle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * chorioid plexus of cerebral hemisphere of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * chorioid plexus of cerebral hemisphere of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * chorioid plexus of fourth ventricle - * choroid plexus fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001446] - * fourth ventricle chorioid plexus of cerebral hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * choroid plexus fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001446 ] + * fourth ventricle chorioid plexus of cerebral hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * fourth ventricle choroid plexus * 4th ventricle choroid plexus @@ -25,7 +25,7 @@ * NeuroNames:638 * SCTID:42214001 * TAO:0001446 - * UMLS:C0152293 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle] + * UMLS:C0152293 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle ] * VHOG:0001375 * ZFA:0001446 * ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle @@ -43,7 +43,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus](../../UBERON/86/UBERON_0001886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fourth ventricle](../../UBERON/22/UBERON_0002422.md) ## Other Logical Axioms @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002390.md b/md/UBERON/90/UBERON_0002390.md index 59e5161360..4982cb06fb 100644 --- a/md/UBERON/90/UBERON_0002390.md +++ b/md/UBERON/90/UBERON_0002390.md @@ -3,15 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002390 * *Label* = hematopoietic system - * *Definition* = The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000570[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OMD:haematological[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hematopoietic_system[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/hematopoietic+system] - * *Comment* = This class was created automatically from a combination of ontologies + * *Definition* = Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Haematopoiesis ] ## Synonyms * haematological system * haemopoietic system * organa haemopoietica - * Blutbildungssystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000570] + * Blutbildungssystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000570 ] * haematopoietic system * hematological system * hematolymphoid system @@ -32,9 +31,9 @@ * MIAA:0000022 * SCTID:362587009 * TAO:0005023 - * UMLS:C0018957 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hematopoietic_System] + * UMLS:C0018957 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hematopoietic_System ] * VHOG:0001624 - * Wikipedia:Hematopoietic_system + * Wikipedia:Haematopoiesis * XAO:0000122 * ZFA:0005023 * ncithesaurus:Hematopoietic_System @@ -64,8 +63,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Zebrafish developmental hematopoiesis shows close correspondence to the development of the mammalian hematopoietic system and is regulated by conserved molecular pathways.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hematopoietic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002490.md b/md/UBERON/90/UBERON_0002490.md index 69194bc4b6..49b0899fb2 100644 --- a/md/UBERON/90/UBERON_0002490.md +++ b/md/UBERON/90/UBERON_0002490.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002490 * *Label* = frontal suture - * *Definition* = The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_suture] + * *Definition* = The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_suture ] ## Synonyms * frontal suture of skull - * sutura frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_suture] - * sutura metopica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52989[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metopic suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002796] - * sutura frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Frontal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sutura frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_suture ] + * sutura metopica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52989, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metopic suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002796 ] + * sutura frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Frontal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002590.md b/md/UBERON/90/UBERON_0002590.md index 9bfa18b7d4..9161a11818 100644 --- a/md/UBERON/90/UBERON_0002590.md +++ b/md/UBERON/90/UBERON_0002590.md @@ -6,19 +6,19 @@ ## Synonyms - * (pre-)piriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1097] - * gyrus olfactorius lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62484[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lateral olfactory gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62484] + * (pre-)piriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1097 ] + * gyrus olfactorius lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62484, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lateral olfactory gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62484 ] * piriform cortex (price) - * piriform olfactory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1097] - * prepiriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62484] - * prepyriform cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62484] - * pyriform area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1097] - * area prepiriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eupalaeocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * palaeocortex II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * peripeduncular area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PPA] - * regio praepiriformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * piriform olfactory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1097 ] + * prepiriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62484 ] + * prepyriform cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62484 ] + * pyriform area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1097 ] + * area prepiriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eupalaeocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * palaeocortex II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * peripeduncular area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PPA ] + * regio praepiriformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,9 +28,9 @@ * EMAPA:32767 * FMA:62484 * NIF_GrossAnatomy:birnlex_1097 - * NeuroNames:165 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1097] + * NeuroNames:165 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1097 ] * SCTID:369104008 - * UMLS:C0228280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1097] + * UMLS:C0228280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1097 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002690.md b/md/UBERON/90/UBERON_0002690.md index dbf3c36887..7f19229af3 100644 --- a/md/UBERON/90/UBERON_0002690.md +++ b/md/UBERON/90/UBERON_0002690.md @@ -6,11 +6,11 @@ ## Synonyms - * AVPe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1401[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior ventral periventricular nucleus of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AVPe] - * anteroventral periventricular nucleus of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AVPV] - * nucleus periventricularis anteroventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:382[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral periventricular hypothalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:382] + * AVPe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1401, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior ventral periventricular nucleus of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AVPe ] + * anteroventral periventricular nucleus of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AVPV ] + * nucleus periventricularis anteroventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:382, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral periventricular hypothalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:382 ] ## Cross-references @@ -19,8 +19,8 @@ * BAMS:AVPe * FMA:62314 * NIF_GrossAnatomy:birnlex_1401 - * NeuroNames:382 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1401] - * UMLS:C0262200 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1401] + * NeuroNames:382 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1401 ] + * UMLS:C0262200 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1401 ] ## Subsets @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002790.md b/md/UBERON/90/UBERON_0002790.md index eeeb80117d..3dc3c28513 100644 --- a/md/UBERON/90/UBERON_0002790.md +++ b/md/UBERON/90/UBERON_0002790.md @@ -6,18 +6,18 @@ ## Synonyms - * posterior acoustic stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72496] - * stria cochlearis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72496[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal acoustic stria (Monakow) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:602] - * striae acusticae dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:602[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior acoustic stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72496 ] + * stria cochlearis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72496, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal acoustic stria (Monakow) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:602 ] + * striae acusticae dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:602, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:das * FMA:72496 * NIF_GrossAnatomy:birnlex_1698 - * NeuroNames:602 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1698] - * UMLS:C0175454 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1698] + * NeuroNames:602 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1698 ] + * UMLS:C0175454 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1698 ] ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002890.md b/md/UBERON/90/UBERON_0002890.md index 2ced773134..65b265789b 100644 --- a/md/UBERON/90/UBERON_0002890.md +++ b/md/UBERON/90/UBERON_0002890.md @@ -6,12 +6,12 @@ ## Synonyms - * anterior amygaloid area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2698] - * anterior amygdalar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2698] - * anterior cortical nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2698] - * area amydaliformis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area amygdaloidea anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area anterior amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:239[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior amygaloid area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2698 ] + * anterior amygdalar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2698 ] + * anterior cortical nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2698 ] + * area amydaliformis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area amygdaloidea anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area anterior amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:239, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * FMA:61861 * MA:0002919 * NIF_GrossAnatomy:birnlex_2698 - * NeuroNames:239 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2698] - * UMLS:C0175215 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2698] + * NeuroNames:239 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2698 ] + * UMLS:C0175215 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2698 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0002990.md b/md/UBERON/90/UBERON_0002990.md index 7a115566a2..916235c89c 100644 --- a/md/UBERON/90/UBERON_0002990.md +++ b/md/UBERON/90/UBERON_0002990.md @@ -6,19 +6,19 @@ ## Synonyms - * mthh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_855[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus mamillothalamicus (hypothalami) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:424[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mammillothalamic tract of the hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:424] + * mthh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_855, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus mamillothalamicus (hypothalami) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:424, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mammillothalamic tract of the hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:424 ] ## Cross-references * BAMS:mthh * FMA:62059 * NIF_GrossAnatomy:birnlex_855 - * NeuroNames:424 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_855] + * NeuroNames:424 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_855 ] * SCTID:369139008 - * UMLS:C0228375 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_855] - * UMLS:C1289566 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_855] + * UMLS:C0228375 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_855 ] + * UMLS:C1289566 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_855 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003090.md b/md/UBERON/90/UBERON_0003090.md index bd23d1c82f..596de1d988 100644 --- a/md/UBERON/90/UBERON_0003090.md +++ b/md/UBERON/90/UBERON_0003090.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003090 * *Label* = supraorbital lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * supraorbital line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000443] + * supraorbital line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000443 ] ## Cross-references @@ -39,8 +39,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of anterior lateral line (TAO:0001470)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003190.md b/md/UBERON/90/UBERON_0003190.md index 2149557aa2..b48352ec96 100644 --- a/md/UBERON/90/UBERON_0003190.md +++ b/md/UBERON/90/UBERON_0003190.md @@ -26,9 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004659 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000288 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003190 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_0003290.md b/md/UBERON/90/UBERON_0003290.md index 3d1f304f10..daac7a2477 100644 --- a/md/UBERON/90/UBERON_0003290.md +++ b/md/UBERON/90/UBERON_0003290.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003290 * *Label* = meninx of diencephalon - * *Definition* = A meninx that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: consider changing genus to subdivision of meninx ## Synonyms - * between brain meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * between brain meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninx of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninx of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninx of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * between brain meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * between brain meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninx of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninx of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninx of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -42,7 +42,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the diencephalon. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003390.md b/md/UBERON/90/UBERON_0003390.md index 592469196d..f00768b55a 100644 --- a/md/UBERON/90/UBERON_0003390.md +++ b/md/UBERON/90/UBERON_0003390.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003390 * *Label* = mesothelium of pleural cavity - * *Definition* = A mesothelium that is part of a pleural cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesothelium that is part of a pleural cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * meso-epithelium of pleural cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pleural cavity meso-epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pleural cavity mesothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * meso-epithelium of pleural cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pleural cavity meso-epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pleural cavity mesothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [pleural cavity](../../UBERON/02/UBERON_0002402.md) and [mesothelium](../../UBERON/36/UBERON_0001136.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003490.md b/md/UBERON/90/UBERON_0003490.md index 78d23a6c5c..3695c4c816 100644 --- a/md/UBERON/90/UBERON_0003490.md +++ b/md/UBERON/90/UBERON_0003490.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003490 * *Label* = respiratory system reticular lamina - * *Definition* = A reticular lamina that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A reticular lamina that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [reticular lamina of epithelium](../../UBERON/67/UBERON_0001967.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003590.md b/md/UBERON/90/UBERON_0003590.md index 2ea9a1820d..d8f13fe7dc 100644 --- a/md/UBERON/90/UBERON_0003590.md +++ b/md/UBERON/90/UBERON_0003590.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003590 * *Label* = main bronchus connective tissue - * *Definition* = A portion of connective tissue that is part of a main bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a main bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchus principalis connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus principalis textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * main bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * primary bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * principal bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of bronchus principalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of main bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of primary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of principal bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchus principalis connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus principalis textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * main bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * primary bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * principal bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of bronchus principalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of main bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of primary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of principal bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -45,15 +45,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main bronchus](../../UBERON/82/UBERON_0002182.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003690.md b/md/UBERON/90/UBERON_0003690.md index 1f0b550504..92e7596bbf 100644 --- a/md/UBERON/90/UBERON_0003690.md +++ b/md/UBERON/90/UBERON_0003690.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003690 * *Label* = sacrum - * *Definition* = The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacrum] + * *Definition* = The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacrum ] ## Synonyms - * os sacrum [vertebrae sacrales i - v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16202[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sacrum [sacral vertebrae I-V] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16202] - * sacrum [sacral vertebrae i - v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16202] - * os sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacrum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * os sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sacrum] - * sacral bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16202] + * os sacrum [vertebrae sacrales i - v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16202, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sacrum [sacral vertebrae I-V] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16202 ] + * sacrum [sacral vertebrae i - v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16202 ] + * os sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacrum ] + * os sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sacrum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sacral bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16202 ] ## Cross-references @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Enlarged vertebra with transverse processes (diapophyses), and ocassionally ribs, that are modified and elaborated for support of the pelvic girdle.[AAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = sacral - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003890.md b/md/UBERON/90/UBERON_0003890.md index e6bb8c957f..42dea95fdf 100644 --- a/md/UBERON/90/UBERON_0003890.md +++ b/md/UBERON/90/UBERON_0003890.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003890 * *Label* = Mullerian duct - * *Definition* = paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061205[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Paramesonephric_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html] + * *Definition* = paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061205, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Paramesonephric_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html ] * *Comment* = Development notes: Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct ## Synonyms @@ -11,8 +11,8 @@ * Muellerian duct * Mllerian duct * ductus paramesonephricus - * paramesonephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:27665] - * early paramesonephric duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004048] + * paramesonephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:27665 ] + * early paramesonephric duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004048 ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A16.254.570 * RETIRED_EHDAA2:0001399 * SCTID:308802006 - * UMLS:C0026732 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mullerian_Duct] + * UMLS:C0026732 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mullerian_Duct ] * VHOG:0001199 * Wikipedia:Paramesonephric_duct * XAO:0000330 @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In females, the archinephric (mesonephric) ducts tend to function only within the urinary systems. The muellerian duct arises embryologically next to the archinephric (wolffian) duct. In males, the muellerian duct regresses if it appears at all, but in females, the muellerian ducts become the oviducts of the reproductive system.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005318 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0003990.md b/md/UBERON/90/UBERON_0003990.md index 71b88daa6c..d43babbaa2 100644 --- a/md/UBERON/90/UBERON_0003990.md +++ b/md/UBERON/90/UBERON_0003990.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003990 * *Label* = spinal cord motor column - * *Definition* = the subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009685] + * *Definition* = the subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009685 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004090.md b/md/UBERON/90/UBERON_0004090.md index 48f2fbb08d..d128385acb 100644 --- a/md/UBERON/90/UBERON_0004090.md +++ b/md/UBERON/90/UBERON_0004090.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004090 * *Label* = periorbital region - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000606] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000606 ] * *Comment* = AO notes: does not contain any subparts in FMA. In HP covers eyelid, eyebrow, soft tissue ## Synonyms - * periorbita [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59351] - * periorbital area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002875] + * periorbita [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59351 ] + * periorbital area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002875 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004190.md b/md/UBERON/90/UBERON_0004190.md index 5fc6f1b02b..06d976cd9e 100644 --- a/md/UBERON/90/UBERON_0004190.md +++ b/md/UBERON/90/UBERON_0004190.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004190 * *Label* = renal glomerulus vasculature - * *Definition* = The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072012] + * *Definition* = The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072012 ] ## Synonyms - * glomerulus vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus vascular network [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal glomerulus vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vascular network of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * vasculature of renal glomerulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * glomerulus vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus vascular network [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal glomerulus vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vascular network of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * vasculature of renal glomerulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [renal glomerulus](../../UBERON/74/UBERON_0000074.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004290.md b/md/UBERON/90/UBERON_0004290.md index b3a83459cb..9bb41a8054 100644 --- a/md/UBERON/90/UBERON_0004290.md +++ b/md/UBERON/90/UBERON_0004290.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004290 * *Label* = dermomyotome - * *Definition* = The bilaminar epithelium formed from the myotome and dermatome. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000214] + * *Definition* = The bilaminar epithelium formed from the myotome and dermatome. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000214 ] ## Synonyms - * dermamyotome [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000676] - * dermomyotomes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000676[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * dermamyotome [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000676 ] + * dermomyotomes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000676, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -16,7 +16,7 @@ * AEO:0000214 * EHDAA2:0003259 * TAO:0001513 - * UMLS:C1511786 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dermomyotome] + * UMLS:C1511786 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dermomyotome ] * VHOG:0000676 * ZFA:0001513 * ncithesaurus:Dermomyotome @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of somites that gives rise to dermis and muscles.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Thus, representatives of the agnathan vertebrates, chondrichthyans, and sarcopterygians all have a layer of undifferentiated cells external to the embryonic myotome. In the amniotes, this external cell layer is the dermomyotome. The simplest interpretation of the similar position, morphology, and lack of myosin labeling is that a dermomyotome epithelium is a shared, ancestral vertebrate characteristic.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004390.md b/md/UBERON/90/UBERON_0004390.md index c6f371b178..ad652b9c63 100644 --- a/md/UBERON/90/UBERON_0004390.md +++ b/md/UBERON/90/UBERON_0004390.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004390 * *Label* = epiphysis of metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * epiphysis of metacarpal - * metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33792] + * metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33792 ] * metacarpal epiphysis ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004490.md b/md/UBERON/90/UBERON_0004490.md index aff5a7deac..4ddfe41d13 100644 --- a/md/UBERON/90/UBERON_0004490.md +++ b/md/UBERON/90/UBERON_0004490.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004490 * *Label* = cardiac muscle tissue of atrium - * *Definition* = A portion of cardiac muscle tissue that is part of an atrium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of an atrium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac atrium](../../UBERON/81/UBERON_0002081.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004590.md b/md/UBERON/90/UBERON_0004590.md index 589f3e16b7..20f92235ac 100644 --- a/md/UBERON/90/UBERON_0004590.md +++ b/md/UBERON/90/UBERON_0004590.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004590 * *Label* = sphincter muscle - * *Definition* = a structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sphincter] + * *Definition* = a structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sphincter ] * *Comment* = AO notes: FMA class is not a subtype of muscle ## Synonyms @@ -14,7 +14,7 @@ ## Cross-references * FMA:75004 - * UMLS:C1409894 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sphincter] + * UMLS:C1409894 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sphincter ] * Wikipedia:Sphincter * ncithesaurus:Sphincter @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004690.md b/md/UBERON/90/UBERON_0004690.md index 50e929b55a..654414d9aa 100644 --- a/md/UBERON/90/UBERON_0004690.md +++ b/md/UBERON/90/UBERON_0004690.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004690 * *Label* = pancreaticoduodenal vein - * *Definition* = A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pancreatico-Duodenal_Vein] + * *Definition* = A vein running parallel to the superior and inferior pancreatico-duodenal arteries that drains blood from the pancreas and duodenum into the superior mesenteric or portal veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pancreatico-Duodenal_Vein ] ## Synonyms - * Superior posterior pancreaticoduodenal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15398] - * pancreatico-duodenal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002190] - * pancreaticoduodenal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15398] + * Superior posterior pancreaticoduodenal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15398 ] + * pancreatico-duodenal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002190 ] + * pancreaticoduodenal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15398 ] * vena pancreaticoduodenalis - * vena pancreaticoduodenalis superior posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15398[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena pancreaticoduodenalis superior posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15398, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:15398 * MA:0002190 * SCTID:76262002 - * UMLS:C0226751 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatico-Duodenal_Vein] + * UMLS:C0226751 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatico-Duodenal_Vein ] * Wikipedia:Pancreaticoduodenal_veins * ncithesaurus:Pancreatico-Duodenal_Vein @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004790.md b/md/UBERON/90/UBERON_0004790.md index f31fe7788d..a26b66abb2 100644 --- a/md/UBERON/90/UBERON_0004790.md +++ b/md/UBERON/90/UBERON_0004790.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004790 * *Label* = skin mucous gland - * *Definition* = A mucous gland that is part of a skin of body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucous gland that is part of a skin of body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes; See comments for 'skin mucus' ## Synonyms - * mucous gland of entire skin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous gland of skin of body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin mucus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skin of body mucous gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucous gland of entire skin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous gland of skin of body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin mucus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skin of body mucous gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucous gland](../../UBERON/14/UBERON_0000414.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skin of body](../../UBERON/97/UBERON_0002097.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004890.md b/md/UBERON/90/UBERON_0004890.md index 66342d7a88..633bb96129 100644 --- a/md/UBERON/90/UBERON_0004890.md +++ b/md/UBERON/90/UBERON_0004890.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004890 * *Label* = right lung accessory lobe - * *Definition* = A specialized lobe of the right lung that extends to the left side of the organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012619] + * *Definition* = A specialized lobe of the right lung that extends to the left side of the organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012619 ] * *Comment* = In mouse this is sometimes divided into intermediate and diaphragmatic lobes[ISBN10:0123813611] // In humans, the right lung typically has 3 lobes (superior, middle, inferior). The lobar fissures are often incomplete, making a connection between two apposed lobes. Conversely, more than the expected number of lobes may be produced by new fissures e.g. the azygous lobe of the lung. The additional lobes are termed 'accessory lobes' -- http://www.gpnotebook.co.uk/simplepage.cfm?ID=1120927803 ## Synonyms - * right lung postcaval lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000427] - * diaphragmatic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611] - * intermediate lobe of right lung [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0123813611] + * right lung postcaval lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000427 ] + * diaphragmatic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611 ] + * intermediate lobe of right lung [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0123813611 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0004990.md b/md/UBERON/90/UBERON_0004990.md index 6ea8576668..84c4a50fd1 100644 --- a/md/UBERON/90/UBERON_0004990.md +++ b/md/UBERON/90/UBERON_0004990.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004990 * *Label* = mucosa of ascending colon - * *Definition* = A mucosa that is part of an ascending colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of an ascending colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ascending colon mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ascending colon mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ascending colon mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ascending colon organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ascending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of ascending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ascending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ascending colon mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ascending colon mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ascending colon mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ascending colon organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ascending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of ascending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ascending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ascending colon](../../UBERON/56/UBERON_0001156.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005090.md b/md/UBERON/90/UBERON_0005090.md index 653412a153..8d46ff6a36 100644 --- a/md/UBERON/90/UBERON_0005090.md +++ b/md/UBERON/90/UBERON_0005090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005090 * *Label* = muscle structure - * *Definition* = Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061061] + * *Definition* = Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061061 ] * *Comment* = Usage notes: in some organisms such as drosophila, muscles can be single cells. This class groups together all discrete muscle elements, from multicellular muscle organs in vertebrates, to individual single-cell muscles in drisophila ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005190.md b/md/UBERON/90/UBERON_0005190.md index 1e5138ecff..bf3597b3f4 100644 --- a/md/UBERON/90/UBERON_0005190.md +++ b/md/UBERON/90/UBERON_0005190.md @@ -25,9 +25,10 @@ ## Other Annotations * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0004360 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005190 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_0005290.md b/md/UBERON/90/UBERON_0005290.md index 9e9e8f79ec..af40a2770e 100644 --- a/md/UBERON/90/UBERON_0005290.md +++ b/md/UBERON/90/UBERON_0005290.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005290 * *Label* = myelencephalon - * *Definition* = The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000758[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myelencephalon] + * *Definition* = The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000758, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myelencephalon ] * *Comment* = the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes ## Synonyms @@ -46,8 +46,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005390.md b/md/UBERON/90/UBERON_0005390.md index 35dcf9e0d9..be6f110ce4 100644 --- a/md/UBERON/90/UBERON_0005390.md +++ b/md/UBERON/90/UBERON_0005390.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005390 * *Label* = cortical layer I - * *Definition* = The most superficial layer of the neocortex characterized by a paucity of cell bodies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] + * *Definition* = The most superficial layer of the neocortex characterized by a paucity of cell bodies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] ## Synonyms - * cerebral cortex, layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX1] - * lamina molecularis isocorticis [lamina i] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83900[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer 1 of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * layer I of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * molecular layer of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Molecular_layer] - * molecular layer of isocortex [layer i] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83900] - * molecular layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83900] - * molecular layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * neocortex layer 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * neocortex layer I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * neocortex molecular layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * neocortex plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] - * plexiform layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090807] + * cerebral cortex, layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX1 ] + * lamina molecularis isocorticis [lamina i] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83900, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer 1 of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * layer I of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * molecular layer of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Molecular_layer ] + * molecular layer of isocortex [layer i] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83900 ] + * molecular layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83900 ] + * molecular layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * neocortex layer 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * neocortex layer I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * neocortex molecular layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * neocortex plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] + * plexiform layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090807 ] * molecular layer * plexiform layer @@ -31,7 +31,7 @@ * MA:0000897 * NIF_GrossAnatomy:nlx_anat_090807 * NeuroNames:2444 - * UMLS:C1709063 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Molecular_Layer] + * UMLS:C1709063 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Molecular_Layer ] * ncithesaurus:Molecular_Layer ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005490.md b/md/UBERON/90/UBERON_0005490.md index 2fb3852775..5d7e1e2281 100644 --- a/md/UBERON/90/UBERON_0005490.md +++ b/md/UBERON/90/UBERON_0005490.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005490 * *Label* = posterior interventricular sulcus - * *Definition* = The ventricles are separated by two grooves, one of which, the anterior longitudinal sulcus, is situated on the sternocostal surface of the heart, close to its left margin, the other posterior longitudinal sulcus (posterior interventricular sulcus, inferior interventricular groove), on the diaphragmatic surface near the right margin. In it run the posterior interventricular artery and middle cardiac vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_interventricular_sulcus] + * *Definition* = The ventricles are separated by two grooves, one of which, the anterior longitudinal sulcus, is situated on the sternocostal surface of the heart, close to its left margin, the other posterior longitudinal sulcus (posterior interventricular sulcus, inferior interventricular groove), on the diaphragmatic surface near the right margin. In it run the posterior interventricular artery and middle cardiac vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_interventricular_sulcus ] ## Synonyms - * diaphragmatic interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7178] - * inferior interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7178] - * posterior interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7178] - * posterior interventricular groove [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_interventricular_sulcus] - * posterior longitudinal sulci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_interventricular_sulcus] - * posterior longitudinal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_interventricular_sulcus] - * sulcus interventricularis anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_interventricular_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * diaphragmatic interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7178 ] + * inferior interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7178 ] + * posterior interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7178 ] + * posterior interventricular groove [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_interventricular_sulcus ] + * posterior longitudinal sulci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_interventricular_sulcus ] + * posterior longitudinal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_interventricular_sulcus ] + * sulcus interventricularis anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_interventricular_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005590.md b/md/UBERON/90/UBERON_0005590.md index 3a489ded44..5345308cd0 100644 --- a/md/UBERON/90/UBERON_0005590.md +++ b/md/UBERON/90/UBERON_0005590.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005590 * *Label* = rhombomere 8 roof plate - * *Definition* = A rhombomere roof plate that is part of a rhombomere 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rhombomere roof plate that is part of a rhombomere 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * roof plate rhombomere 8 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001035] + * roof plate rhombomere 8 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001035 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [rhombomere 8](../../UBERON/27/UBERON_0005527.md) and [rhombomere roof plate](../../UBERON/02/UBERON_0005502.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005690.md b/md/UBERON/90/UBERON_0005690.md index c86b6a8cbb..8f662b8a68 100644 --- a/md/UBERON/90/UBERON_0005690.md +++ b/md/UBERON/90/UBERON_0005690.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005690 * *Label* = 3rd arch mesenchyme - * *Definition* = Mesenchyme that is part of a pharyngeal arch 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pharyngeal arch 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 3rd pharyngeal arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001083] + * 3rd pharyngeal arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001083 ] * 3rd branchial arch mesenchyme * pharyngeal arch 3 mesenchyme @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 3](../../UBERON/14/UBERON_0003114.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005890.md b/md/UBERON/90/UBERON_0005890.md index ffbc917058..cd3171dcc1 100644 --- a/md/UBERON/90/UBERON_0005890.md +++ b/md/UBERON/90/UBERON_0005890.md @@ -6,9 +6,9 @@ ## Synonyms - * germinal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + RETIRED_EHDAA2:0000706] - * coelomic epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17384] - * surface epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004524] + * germinal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = RETIRED_EHDAA2:0000706 ] + * coelomic epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17384 ] + * surface epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004524 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0005990.md b/md/UBERON/90/UBERON_0005990.md index 06c507c6cc..6de37843da 100644 --- a/md/UBERON/90/UBERON_0005990.md +++ b/md/UBERON/90/UBERON_0005990.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005990 * *Label* = aortic valve cusp - * *Definition* = the three fibrous triangular components and associated flap of the aortic valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010595] + * *Definition* = the three fibrous triangular components and associated flap of the aortic valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010595 ] ## Synonyms - * aortic semilunar valvule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7251] - * aortic valvular cusp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7251] - * cusp of aortic valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7251] - * semilunar valvule of aortic valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7251] + * aortic semilunar valvule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7251 ] + * aortic valvular cusp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7251 ] + * cusp of aortic valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7251 ] + * semilunar valvule of aortic valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7251 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cusp of cardiac valve](../../UBERON/09/UBERON_0006009.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aortic valve](../../UBERON/37/UBERON_0002137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006090.md b/md/UBERON/90/UBERON_0006090.md index 9753c35f76..aeb957f854 100644 --- a/md/UBERON/90/UBERON_0006090.md +++ b/md/UBERON/90/UBERON_0006090.md @@ -6,23 +6,23 @@ ## Synonyms - * central part of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72627] - * central part of glossopharyngeal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1274] - * glossopharyngeal nerve fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1274] - * glossopharyngeal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72627] - * glossopharyngeal nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1274] - * glossopharyngeal nerve tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72627] - * ninth cranial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72627] - * ninth cranial nerve fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1274] - * fibrae nervi glossopharyngei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:793[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * central part of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72627 ] + * central part of glossopharyngeal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1274 ] + * glossopharyngeal nerve fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1274 ] + * glossopharyngeal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72627 ] + * glossopharyngeal nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1274 ] + * glossopharyngeal nerve tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72627 ] + * ninth cranial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72627 ] + * ninth cranial nerve fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1274 ] + * fibrae nervi glossopharyngei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:793, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:9nf * FMA:72627 * NIF_GrossAnatomy:birnlex_1274 - * NeuroNames:793 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1274] - * UMLS:C0175550 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1274] + * NeuroNames:793 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1274 ] + * UMLS:C0175550 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1274 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006190.md b/md/UBERON/90/UBERON_0006190.md index 94f04f2a45..5cd72cb2e4 100644 --- a/md/UBERON/90/UBERON_0006190.md +++ b/md/UBERON/90/UBERON_0006190.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006190 * *Label* = mesonephric distal tubule - * *Definition* = The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061273] + * *Definition* = The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061273 ] * *Comment* = note that ZFA has terms for developing tubule ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [distal tubule](../../UBERON/35/UBERON_0004135.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006290.md b/md/UBERON/90/UBERON_0006290.md index 53d5aea5b0..57cfaf25a4 100644 --- a/md/UBERON/90/UBERON_0006290.md +++ b/md/UBERON/90/UBERON_0006290.md @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [scapula endochondral element](../../UBERON/57/UBERON_0015057.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006490.md b/md/UBERON/90/UBERON_0006490.md index 445fad697e..5d5554b0b3 100644 --- a/md/UBERON/90/UBERON_0006490.md +++ b/md/UBERON/90/UBERON_0006490.md @@ -6,16 +6,16 @@ ## Synonyms - * C4 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71182] - * C4 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_753] - * forth cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_753] + * C4 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71182 ] + * C4 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_753 ] + * forth cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_753 ] ## Cross-references * FMA:71182 * NIF_GrossAnatomy:birnlex_753 * SCTID:278757007 - * UMLS:C0457854 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_753] + * UMLS:C0457854 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_753 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006590.md b/md/UBERON/90/UBERON_0006590.md index a87ec22a2d..9220f727d3 100644 --- a/md/UBERON/90/UBERON_0006590.md +++ b/md/UBERON/90/UBERON_0006590.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006590 * *Label* = vestigial embryonic structure - * *Definition* = Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16558[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16558, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006690.md b/md/UBERON/90/UBERON_0006690.md index a7771d65f3..4793d72fcf 100644 --- a/md/UBERON/90/UBERON_0006690.md +++ b/md/UBERON/90/UBERON_0006690.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0006790.md b/md/UBERON/90/UBERON_0006790.md index 464785ab44..02174da96c 100644 --- a/md/UBERON/90/UBERON_0006790.md +++ b/md/UBERON/90/UBERON_0006790.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006790 * *Label* = deep white layer of superior colliculus - * *Definition* = deep white matter layer of superior collilculus that consists entirely of fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] + * *Definition* = deep white matter layer of superior collilculus that consists entirely of fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] ## Synonyms - * lamina VII of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * lamina colliculi superioris vii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72416[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer VII of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72416] - * stratum album profundum of superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_colliculus#Neural_circuit] - * deep white layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DpWh] - * deep white layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:dw] - * deep white zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000494] - * superior colliculus deep white layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCdw] - * superior colliculus intermediate deep white layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCdw] + * lamina VII of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * lamina colliculi superioris vii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72416, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer VII of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72416 ] + * stratum album profundum of superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_colliculus#Neural_circuit ] + * deep white layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DpWh ] + * deep white layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:dw ] + * deep white zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000494 ] + * superior colliculus deep white layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCdw ] + * superior colliculus intermediate deep white layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCdw ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007190.md b/md/UBERON/90/UBERON_0007190.md index 112dd54bfb..a32f192600 100644 --- a/md/UBERON/90/UBERON_0007190.md +++ b/md/UBERON/90/UBERON_0007190.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007290.md b/md/UBERON/90/UBERON_0007290.md index 5f09bf1b5e..1871c09046 100644 --- a/md/UBERON/90/UBERON_0007290.md +++ b/md/UBERON/90/UBERON_0007290.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007290 * *Label* = presumptive rhombomere 3 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 3](../../UBERON/07/UBERON_0005507.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007390.md b/md/UBERON/90/UBERON_0007390.md index 70ff937df0..22e0996224 100644 --- a/md/UBERON/90/UBERON_0007390.md +++ b/md/UBERON/90/UBERON_0007390.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007390 * *Label* = pectoral appendage cartilage tissue - * *Definition* = A cartilage tissue that is part of a pectoral appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage tissue that is part of a pectoral appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pectoral fin cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000257] + * pectoral fin cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000257 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage which is part of the pectoral fin.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007490.md b/md/UBERON/90/UBERON_0007490.md index 4b544dfa44..f9146aa70f 100644 --- a/md/UBERON/90/UBERON_0007490.md +++ b/md/UBERON/90/UBERON_0007490.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007490 * *Label* = keratin-based acellular structure - * *Definition* = Acellular anatomical structure whose predominant constituent is keratin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Acellular anatomical structure whose predominant constituent is keratin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acellular anatomical structure](../../UBERON/76/UBERON_0000476.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [keratin filament](../../GO/95/GO_0045095.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003099 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007590.md b/md/UBERON/90/UBERON_0007590.md index 07f3b967b2..716edbaf64 100644 --- a/md/UBERON/90/UBERON_0007590.md +++ b/md/UBERON/90/UBERON_0007590.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007690.md b/md/UBERON/90/UBERON_0007690.md index 2178e1150b..686db4e738 100644 --- a/md/UBERON/90/UBERON_0007690.md +++ b/md/UBERON/90/UBERON_0007690.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007690 * *Label* = early pharyngeal endoderm - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dev.biologists.org/content/128/22/4573.full] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dev.biologists.org/content/128/22/4573.full ] * *Comment* = relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm' ## Synonyms - * early pharyngeal arch endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001457] + * early pharyngeal arch endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001457 ] * pharyngeal arch endoderm - * pharyngeal endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001104] - * pharyngeal region endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001456] + * pharyngeal endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001104 ] + * pharyngeal region endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001456 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0007990.md b/md/UBERON/90/UBERON_0007990.md index 2cc6b2d1dc..0505c60db9 100644 --- a/md/UBERON/90/UBERON_0007990.md +++ b/md/UBERON/90/UBERON_0007990.md @@ -6,7 +6,7 @@ ## Synonyms - * proximal sesamoid bone of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001376] + * proximal sesamoid bone of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001376 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0008290.md b/md/UBERON/90/UBERON_0008290.md index dc5ca32629..addecfa780 100644 --- a/md/UBERON/90/UBERON_0008290.md +++ b/md/UBERON/90/UBERON_0008290.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0008790.md b/md/UBERON/90/UBERON_0008790.md index eab7df69df..dc8170c46f 100644 --- a/md/UBERON/90/UBERON_0008790.md +++ b/md/UBERON/90/UBERON_0008790.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008790 * *Label* = rugal fold - * *Definition* = a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rugae[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/Rugal+folds] + * *Definition* = a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rugae, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/Rugal+folds ] ## Synonyms - * ruga [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rugae] - * rugae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rugae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ruga [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rugae ] + * rugae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rugae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0009090.md b/md/UBERON/90/UBERON_0009090.md index d096dffb94..5f3c049270 100644 --- a/md/UBERON/90/UBERON_0009090.md +++ b/md/UBERON/90/UBERON_0009090.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0009590.md b/md/UBERON/90/UBERON_0009590.md index e5e24a1e9c..714941f23a 100644 --- a/md/UBERON/90/UBERON_0009590.md +++ b/md/UBERON/90/UBERON_0009590.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009590 * *Label* = mesenchyme of interdigital region between pedal digits 1 and 2 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between toes 1 and 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000858] + * interdigital region between toes 1 and 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000858 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between pedal digits 1 and 2](../../UBERON/38/UBERON_0006038.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0009890.md b/md/UBERON/90/UBERON_0009890.md index 00676590aa..9720d1f17e 100644 --- a/md/UBERON/90/UBERON_0009890.md +++ b/md/UBERON/90/UBERON_0009890.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009890 * *Label* = anterior intestinal portal - * *Definition* = opening of the foregut into the midgut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/fovea-cardiaca.html] + * *Definition* = opening of the foregut into the midgut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/fovea-cardiaca.html ] ## Synonyms - * fovea cardiaca [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/fovea-cardiaca.html] + * fovea cardiaca [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/fovea-cardiaca.html ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0009990.md b/md/UBERON/90/UBERON_0009990.md index 486a98e1e1..7a3e1764bd 100644 --- a/md/UBERON/90/UBERON_0009990.md +++ b/md/UBERON/90/UBERON_0009990.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009990 * *Label* = medial condyle of tibia - * *Definition* = The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_tibia] + * *Definition* = The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_tibia ] ## Synonyms - * condylus medialis (tibia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35445] - * c. medialis tibiae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_tibia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial condyle of the tibia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_tibia] - * medial tibial condyle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medial_condyle_of_tibia] + * condylus medialis (tibia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35445 ] + * c. medialis tibiae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_tibia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial condyle of the tibia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_tibia ] + * medial tibial condyle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medial_condyle_of_tibia ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010090.md b/md/UBERON/90/UBERON_0010090.md index d857178e84..48b7fb4645 100644 --- a/md/UBERON/90/UBERON_0010090.md +++ b/md/UBERON/90/UBERON_0010090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010090 * *Label* = future falx cerebri - * *Definition* = A developing anatomical structure that has_potential_to_develop_into a falx cerebri. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A developing anatomical structure that has_potential_to_develop_into a falx cerebri. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [falx cerebri](../../UBERON/59/UBERON_0006059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010190.md b/md/UBERON/90/UBERON_0010190.md index fc6b20a8ff..c499f1bf3f 100644 --- a/md/UBERON/90/UBERON_0010190.md +++ b/md/UBERON/90/UBERON_0010190.md @@ -6,7 +6,7 @@ ## Synonyms - * paired dorsal aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000410] + * paired dorsal aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000410 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010290.md b/md/UBERON/90/UBERON_0010290.md index 33f9d28e0a..26f4a4d92e 100644 --- a/md/UBERON/90/UBERON_0010290.md +++ b/md/UBERON/90/UBERON_0010290.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010290 * *Label* = scleral ossicle - * *Definition* = A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17051547] + * *Definition* = A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17051547 ] * *Comment* = Taxon notes: The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts). Function notes: The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984). ## Synonyms - * scleral ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:17051547] - * sclerotic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001411] + * scleral ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:17051547 ] + * sclerotic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001411 ] * sclerotic ossicle ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010390.md b/md/UBERON/90/UBERON_0010390.md index e694d7b63a..a8e93aad6d 100644 --- a/md/UBERON/90/UBERON_0010390.md +++ b/md/UBERON/90/UBERON_0010390.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010390 * *Label* = lumen of urethra - * *Definition* = An organ cavity that is part of a urethra. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ cavity that is part of a urethra. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * urethral lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19709] + * urethral lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19709 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010690.md b/md/UBERON/90/UBERON_0010690.md index 8790f5025d..8a44355799 100644 --- a/md/UBERON/90/UBERON_0010690.md +++ b/md/UBERON/90/UBERON_0010690.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010690 * *Label* = manual digit 1 epithelium - * *Definition* = An epithelium that is part of a manual digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a manual digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 1 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 1 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 1 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 1 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 1](../../UBERON/63/UBERON_0001463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010890.md b/md/UBERON/90/UBERON_0010890.md index 1d7ea3fd13..025bcd8539 100644 --- a/md/UBERON/90/UBERON_0010890.md +++ b/md/UBERON/90/UBERON_0010890.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010890 * *Label* = pelvic complex muscle - * *Definition* = Muscles of the pelvic girdle, hindlimb or pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Muscles of the pelvic girdle, hindlimb or pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * pelvic girdle and hind limb muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000218] - * pelvic girdle or hind limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * pelvic girdle or posterior limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * lower limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9622[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * muscle of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9622[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pelvic girdle and hind limb muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000218 ] + * pelvic girdle or hind limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * pelvic girdle or posterior limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * lower limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9622, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * muscle of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9622, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * muscle of pelvic girdle and leg ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscles of the pelvic girdle, thigh, leg (crus), and foot (pes).[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0010990.md b/md/UBERON/90/UBERON_0010990.md index b0549f09b6..08ae1e010d 100644 --- a/md/UBERON/90/UBERON_0010990.md +++ b/md/UBERON/90/UBERON_0010990.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010990 * *Label* = transversospinales muscle - * *Definition* = The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversospinales_muscles] + * *Definition* = The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversospinales_muscles ] ## Synonyms - * transverospinalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002075] - * deep dorsal muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversospinales_muscles] - * musculi transversospinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * musculi transversospinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversospinales_muscles[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * transversospinal group of muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Transversospinales_muscles] - * transversospinales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71304] - * transversospinales muscle group [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71304] + * transverospinalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002075 ] + * deep dorsal muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversospinales_muscles ] + * musculi transversospinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * musculi transversospinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversospinales_muscles, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * transversospinal group of muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Transversospinales_muscles ] + * transversospinales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71304 ] + * transversospinales muscle group [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71304 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010990 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0011090.md b/md/UBERON/90/UBERON_0011090.md index 20b4c7e8cb..3098d149da 100644 --- a/md/UBERON/90/UBERON_0011090.md +++ b/md/UBERON/90/UBERON_0011090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011090 * *Label* = skeleton of right pelvic girdle - * *Definition* = A skeleton of pelvic girdle that is part of a right pelvic girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeleton of pelvic girdle that is part of a right pelvic girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right pelvic girdle region](../../UBERON/92/UBERON_0011092.md) and [pelvic girdle skeleton](../../UBERON/32/UBERON_0007832.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0011190.md b/md/UBERON/90/UBERON_0011190.md index f50d130270..734c371506 100644 --- a/md/UBERON/90/UBERON_0011190.md +++ b/md/UBERON/90/UBERON_0011190.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011190 * *Label* = lunule of nail - * *Definition* = A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:unula_(anatomy)] + * *Definition* = A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:unula_(anatomy) ] ## Synonyms * lunula - * nail lunule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77858] + * nail lunule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77858 ] ## Cross-references * FMA:77858 * SCTID:300538005 - * UMLS:C0221991 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lunula] + * UMLS:C0221991 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lunula ] * Wikipedia:unula_(anatomy) * ncithesaurus:Lunula @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0011390.md b/md/UBERON/90/UBERON_0011390.md index d2b224cb7a..c43f280fc2 100644 --- a/md/UBERON/90/UBERON_0011390.md +++ b/md/UBERON/90/UBERON_0011390.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011390 * *Label* = pudendal nerve - * *Definition* = The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_nerve] + * *Definition* = The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_nerve ] ## Synonyms - * internal pudendal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_nerve] - * pudenal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_nerve] - * pudendal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pudendal_nerve] + * internal pudendal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_nerve ] + * pudenal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_nerve ] + * pudendal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pudendal_nerve ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0011590.md b/md/UBERON/90/UBERON_0011590.md index d33e14ff92..2caa6e7b10 100644 --- a/md/UBERON/90/UBERON_0011590.md +++ b/md/UBERON/90/UBERON_0011590.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011590 * *Label* = commissure of diencephalon - * *Definition* = A commissure that is part of a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A commissure that is part of a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalon commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62445] + * diencephalon commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62445 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nervous system commissure](../../UBERON/20/UBERON_0001020.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0012290.md b/md/UBERON/90/UBERON_0012290.md index 299c7a70e4..9284bae061 100644 --- a/md/UBERON/90/UBERON_0012290.md +++ b/md/UBERON/90/UBERON_0012290.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012290 * *Label* = fused carpals 2 and 3 - * *Definition* = A carpal bone that is formed from the fusion of the 2nd and 3rd distal carpal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:skansa] + * *Definition* = A carpal bone that is formed from the fusion of the 2nd and 3rd distal carpal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:skansa ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [carpal bone](../../UBERON/35/UBERON_0001435.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [distal carpal bone 2](../../UBERON/31/UBERON_0001431.md) and [has_fused_element](../../RO/74/RO_0002374.md) some [distal carpal bone 3](../../UBERON/32/UBERON_0001432.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012290 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0012490.md b/md/UBERON/90/UBERON_0012490.md index e9ddce5b21..08ffd9b89f 100644 --- a/md/UBERON/90/UBERON_0012490.md +++ b/md/UBERON/90/UBERON_0012490.md @@ -7,11 +7,11 @@ ## Synonyms * anal canal muscularis propria - * anal muscularis propria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15708] + * anal muscularis propria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15708 ] * muscular coat of anal canal * muscular layer of anal canal * muscularis externa of anal canal - * muscularis propria of anal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15708] + * muscularis propria of anal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15708 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anal canal](../../UBERON/59/UBERON_0000159.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0013190.md b/md/UBERON/90/UBERON_0013190.md index d434d527d3..e9d9324685 100644 --- a/md/UBERON/90/UBERON_0013190.md +++ b/md/UBERON/90/UBERON_0013190.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013190 * *Label* = entotympanic bone - * *Definition* = Entotympanics are independent elements present in the auditory bullae of various eutherians [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1023/A:1020538313412] + * *Definition* = Entotympanics are independent elements present in the auditory bullae of various eutherians [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1023/A:1020538313412 ] * *Comment* = endochondral [doi:10.1023/A:1020538313412] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013190 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0013490.md b/md/UBERON/90/UBERON_0013490.md index 0ae92f21e6..21013fc128 100644 --- a/md/UBERON/90/UBERON_0013490.md +++ b/md/UBERON/90/UBERON_0013490.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013490 * *Label* = deep cervical fascia - * *Definition* = The deep cervical fascia (or fascia colli in older texts) lies under cover of the Platysma, and invests the neck; it also forms sheaths for the carotid vessels, and for the structures situated in front of the vertebral column. Its attachment to the hyoid bone prevents the formation of a dewlap. The investing portion of the fascia is attached behind to the ligamentum nuchC& and to the spinous process of the seventh cervical vertebra. The 'alar fascia' is a portion of deep cervical fascia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_fascia] + * *Definition* = The deep cervical fascia (or fascia colli in older texts) lies under cover of the Platysma, and invests the neck; it also forms sheaths for the carotid vessels, and for the structures situated in front of the vertebral column. Its attachment to the hyoid bone prevents the formation of a dewlap. The investing portion of the fascia is attached behind to the ligamentum nuchC& and to the spinous process of the seventh cervical vertebra. The 'alar fascia' is a portion of deep cervical fascia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_fascia ] ## Synonyms - * deep cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21791] - * deep fascia of neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21791] - * investing cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21791] - * investing layer of cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21791] - * fascia coli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_fascia] - * fascia colli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_cervical_fascia] + * deep cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21791 ] + * deep fascia of neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21791 ] + * investing cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21791 ] + * investing layer of cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21791 ] + * fascia coli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_fascia ] + * fascia colli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_cervical_fascia ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0013590.md b/md/UBERON/90/UBERON_0013590.md index 205d3678c1..682f0aad7f 100644 --- a/md/UBERON/90/UBERON_0013590.md +++ b/md/UBERON/90/UBERON_0013590.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013590 * *Label* = cruciate sulcus - * *Definition* = a deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] + * *Definition* = a deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/cruciate+sulcus ] ## Synonyms - * cruciate sulci [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cruciate sulci [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014390.md b/md/UBERON/90/UBERON_0014390.md index 7a20ae1aca..63bc1a4829 100644 --- a/md/UBERON/90/UBERON_0014390.md +++ b/md/UBERON/90/UBERON_0014390.md @@ -6,10 +6,10 @@ ## Synonyms - * muscularis externa of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14958] - * ileal smooth muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * muscularis propria of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * smooth muscle of ileum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * muscularis externa of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14958 ] + * ileal smooth muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * muscularis propria of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * smooth muscle of ileum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ileum](../../UBERON/16/UBERON_0002116.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014390 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014490.md b/md/UBERON/90/UBERON_0014490.md index ddc6cc773a..5fe2e8e3f6 100644 --- a/md/UBERON/90/UBERON_0014490.md +++ b/md/UBERON/90/UBERON_0014490.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014490 * *Label* = middle phalanx of digit 4 - * *Definition* = A middle phalanx that is part of a digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A middle phalanx that is part of a digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 4](../../UBERON/51/UBERON_0006051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014490 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014590.md b/md/UBERON/90/UBERON_0014590.md index b537e30b01..e4d5815685 100644 --- a/md/UBERON/90/UBERON_0014590.md +++ b/md/UBERON/90/UBERON_0014590.md @@ -6,14 +6,14 @@ ## Synonyms - * anterior nucleus of hypothalamus central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1119[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * AHNc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1119[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior hypothalamic area central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHC] - * anterior hypothalamic area, central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHC] - * anterior hypothalamic central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNc] - * anterior hypothalamic nucleus central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNc] - * anterior hypothalamic nucleus, central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHC] - * anterior hypothalamic nucleus, central part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNc] + * anterior nucleus of hypothalamus central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1119, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * AHNc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1119, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior hypothalamic area central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHC ] + * anterior hypothalamic area, central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHC ] + * anterior hypothalamic central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNc ] + * anterior hypothalamic nucleus central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNc ] + * anterior hypothalamic nucleus, central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHC ] + * anterior hypothalamic nucleus, central part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNc ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014590 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014690.md b/md/UBERON/90/UBERON_0014690.md index d91cf22910..84b0b46c71 100644 --- a/md/UBERON/90/UBERON_0014690.md +++ b/md/UBERON/90/UBERON_0014690.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014690 * *Label* = left gastric vein - * *Definition* = The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_gastric_vein] + * *Definition* = The Left gastric vein (or coronary vein) carries blood low in Oxygen, tributaries derived from both surfaces of the stomach; it runs from right to left along the lesser curvature of the stomach, between the two layers of the lesser omentum, to the esophageal opening of the stomach, where it receives some esophageal veins. It then turns backward and passes from left to right behind the omental bursa and drains into the portal vein. Esophageal and paraesophageal varices are primarily supplied by the left gastric vein and typically drain into the azygos/hemiazygos venous system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_gastric_vein ] ## Synonyms - * vena gastrica sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_gastric_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * coronary vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_gastric_vein] + * vena gastrica sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_gastric_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * coronary vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_gastric_vein ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gastric vein](../../UBERON/50/UBERON_0004450.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014690 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014790.md b/md/UBERON/90/UBERON_0014790.md index 9864e2e14f..c5b3828bb6 100644 --- a/md/UBERON/90/UBERON_0014790.md +++ b/md/UBERON/90/UBERON_0014790.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014790 * *Label* = lingual septum - * *Definition* = The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_septum] + * *Definition* = The lingual septum consists of a vertical layer of fibrous tissue, extending throughout the entire length of the median plane of the tongue, though not quite reaching the dorsum. It is thicker behind than in front, and occasionally contains a small fibrocartilage, about 6 mm. in length. It is well displayed by making a vertical section across the organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_septum ] ## Synonyms - * septum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54813] - * median fibrous septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_septum] - * septum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_septum] - * tongue septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lingual_septum] + * septum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54813 ] + * median fibrous septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_septum ] + * septum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_septum ] + * tongue septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lingual_septum ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tongue](../../UBERON/23/UBERON_0001723.md) and [septum](../../UBERON/37/UBERON_0003037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014790 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0014890.md b/md/UBERON/90/UBERON_0014890.md index 8c5a5115ce..73cae40d54 100644 --- a/md/UBERON/90/UBERON_0014890.md +++ b/md/UBERON/90/UBERON_0014890.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014890 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_0015090.md b/md/UBERON/90/UBERON_0015090.md index 122a9ca31e..882ec17a2c 100644 --- a/md/UBERON/90/UBERON_0015090.md +++ b/md/UBERON/90/UBERON_0015090.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015090 + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2000090.md b/md/UBERON/90/UBERON_2000090.md index e6a46bd170..1e00eea697 100644 --- a/md/UBERON/90/UBERON_2000090.md +++ b/md/UBERON/90/UBERON_2000090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000090 * *Label* = apical ectodermal ridge dorsal fin - * *Definition* = Apical ectodermal ridge that is part of the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Apical ectodermal ridge that is part of the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2000390.md b/md/UBERON/90/UBERON_2000390.md index c9b9604231..e93af7df9d 100644 --- a/md/UBERON/90/UBERON_2000390.md +++ b/md/UBERON/90/UBERON_2000390.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2000690.md b/md/UBERON/90/UBERON_2000690.md index d6f3a2aad9..f11600408f 100644 --- a/md/UBERON/90/UBERON_2000690.md +++ b/md/UBERON/90/UBERON_2000690.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2000790.md b/md/UBERON/90/UBERON_2000790.md index edbb890d22..a0e1323a0d 100644 --- a/md/UBERON/90/UBERON_2000790.md +++ b/md/UBERON/90/UBERON_2000790.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 10 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000790[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 10 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000790, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_2001190.md b/md/UBERON/90/UBERON_2001190.md index d7779b7a33..f8ce9d6076 100644 --- a/md/UBERON/90/UBERON_2001190.md +++ b/md/UBERON/90/UBERON_2001190.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001190 * *Label* = Weberian vertebra - * *Definition* = Vertebra that is part of the Weberian apparatus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Vertebra that is part of the Weberian apparatus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Weberian vertebra are usually vertebra 1-4. Present in Otophysi. ## Synonyms - * Weberian vertebrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001190[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * Weberian vertebrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001190, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2001690.md b/md/UBERON/90/UBERON_2001690.md index 8cfa23ca53..75cd30f386 100644 --- a/md/UBERON/90/UBERON_2001690.md +++ b/md/UBERON/90/UBERON_2001690.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001690 * *Label* = anterior cartilage of palatine - * *Definition* = anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2001790.md b/md/UBERON/90/UBERON_2001790.md index 0bc3b20da9..a2ffbac5e1 100644 --- a/md/UBERON/90/UBERON_2001790.md +++ b/md/UBERON/90/UBERON_2001790.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001790 * *Label* = dorsal fin spine 2 - * *Definition* = Dorsal-fin lepidotrichium 2 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with second dorsal-fin pterygiophore. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dorsal-fin lepidotrichium 2 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with second dorsal-fin pterygiophore. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal spine 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001790] + * dorsal spine 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001790 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2001990.md b/md/UBERON/90/UBERON_2001990.md index 8c2d37c4d2..d2694d2698 100644 --- a/md/UBERON/90/UBERON_2001990.md +++ b/md/UBERON/90/UBERON_2001990.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001990 * *Label* = epibranchial arborescent organ - * *Definition* = Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. ## Synonyms - * suprabranchial organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001990] + * suprabranchial organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001990 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2002090.md b/md/UBERON/90/UBERON_2002090.md index 7e01639c5b..8961ca95d4 100644 --- a/md/UBERON/90/UBERON_2002090.md +++ b/md/UBERON/90/UBERON_2002090.md @@ -6,7 +6,7 @@ ## Synonyms - * prootic fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002090] + * prootic fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002090 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_2002290.md b/md/UBERON/90/UBERON_2002290.md index b11fec13a9..e907658870 100644 --- a/md/UBERON/90/UBERON_2002290.md +++ b/md/UBERON/90/UBERON_2002290.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002290 * *Label* = obsolete vitreous - * *Definition* = Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:18344966] + * *Definition* = Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:18344966 ] ## Synonyms @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0001797 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_2005190.md b/md/UBERON/90/UBERON_2005190.md index 31d754ece8..043eeb378e 100644 --- a/md/UBERON/90/UBERON_2005190.md +++ b/md/UBERON/90/UBERON_2005190.md @@ -6,7 +6,7 @@ ## Synonyms - * middle ventral 1 neuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005190] + * middle ventral 1 neuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005190 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_3000190.md b/md/UBERON/90/UBERON_3000190.md index 001af6f93d..c8f473a261 100644 --- a/md/UBERON/90/UBERON_3000190.md +++ b/md/UBERON/90/UBERON_3000190.md @@ -6,9 +6,9 @@ ## Synonyms - * canalis orbitonasalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000190] - * canalis orbitonasalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000190] - * foramen orbitonasale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000190] + * canalis orbitonasalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000190 ] + * canalis orbitonasalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000190 ] + * foramen orbitonasale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000190 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3000290.md b/md/UBERON/90/UBERON_3000290.md index 13fcd9a42c..03ea10facc 100644 --- a/md/UBERON/90/UBERON_3000290.md +++ b/md/UBERON/90/UBERON_3000290.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3000590.md b/md/UBERON/90/UBERON_3000590.md index e317b74387..ef615bcb16 100644 --- a/md/UBERON/90/UBERON_3000590.md +++ b/md/UBERON/90/UBERON_3000590.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3010090.md b/md/UBERON/90/UBERON_3010090.md index 9de94f36fa..9eebfefd11 100644 --- a/md/UBERON/90/UBERON_3010090.md +++ b/md/UBERON/90/UBERON_3010090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010090 * *Label* = M. tibialis anticus brevis - * *Definition* = Originates from the dorso-lateral surface of the tibiofibula and inserts on the proximo-medial surface of the tibiale dorsal to the medial head of M. tibialis anticus longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates from the dorso-lateral surface of the tibiofibula and inserts on the proximo-medial surface of the tibiale dorsal to the medial head of M. tibialis anticus longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3010190.md b/md/UBERON/90/UBERON_3010190.md index 204aadbfd7..8531f69e9a 100644 --- a/md/UBERON/90/UBERON_3010190.md +++ b/md/UBERON/90/UBERON_3010190.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3010290.md b/md/UBERON/90/UBERON_3010290.md index cb4b6e5cc4..5cc3c15c44 100644 --- a/md/UBERON/90/UBERON_3010290.md +++ b/md/UBERON/90/UBERON_3010290.md @@ -6,7 +6,7 @@ ## Synonyms - * germ line cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010290] + * germ line cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010290 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000039 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/90/UBERON_3010590.md b/md/UBERON/90/UBERON_3010590.md index 8c562b8294..b3954b56df 100644 --- a/md/UBERON/90/UBERON_3010590.md +++ b/md/UBERON/90/UBERON_3010590.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010590 * *Label* = amphibian cloacal gland - * *Definition* = A structure that surrounds the cloacal opening, consisting of a mass of coarse tubules. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = A structure that surrounds the cloacal opening, consisting of a mass of coarse tubules. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3010690.md b/md/UBERON/90/UBERON_3010690.md index 48d07c2332..d66a617472 100644 --- a/md/UBERON/90/UBERON_3010690.md +++ b/md/UBERON/90/UBERON_3010690.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010690 * *Label* = fetal tooth - * *Definition* = Type of deciduous dentition found in foetuses and altricial juveniles of some caecilians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:HM] + * *Definition* = Type of deciduous dentition found in foetuses and altricial juveniles of some caecilians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:HM ] ## Synonyms - * fetal teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010690] + * fetal teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010690 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_3010790.md b/md/UBERON/90/UBERON_3010790.md index 29429400ef..32af1069b7 100644 --- a/md/UBERON/90/UBERON_3010790.md +++ b/md/UBERON/90/UBERON_3010790.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_4000090.md b/md/UBERON/90/UBERON_4000090.md index e7734a02b3..10d5f47746 100644 --- a/md/UBERON/90/UBERON_4000090.md +++ b/md/UBERON/90/UBERON_4000090.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000090 * *Label* = integumentary skeleton - * *Definition* = Skeletal subdivision that is part of the extra-oral dermal skeletal system that develops and remains invested within the integument, primarily the dermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Skeletal subdivision that is part of the extra-oral dermal skeletal system that develops and remains invested within the integument, primarily the dermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/90/UBERON_4200090.md b/md/UBERON/90/UBERON_4200090.md index 254edb94a2..5734eb67c0 100644 --- a/md/UBERON/90/UBERON_4200090.md +++ b/md/UBERON/90/UBERON_4200090.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0000091.md b/md/UBERON/91/UBERON_0000091.md index dfb430c0e5..03794223bd 100644 --- a/md/UBERON/91/UBERON_0000091.md +++ b/md/UBERON/91/UBERON_0000091.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000091 * *Label* = bilaminar disc - * *Definition* = A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] + * *Definition* = A flattened, almost circular bilaminar plate of cells formed when the inner cell mass (aka embryoblast) forms two epithelial layers, each of a distinct lineage, separated by an extracellular basement membrane: the external (dorsal) layer is called the epiblast and the internal (ventral) layer is called the hypoblast (aka primitive endoderm); together, they compose the bilaminar embryonic disc. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] ## Synonyms * bilaminary embryonic disc - * bilaminary germ disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:9780878932504] - * embryonic disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] - * embryonic shield [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] - * germinal disc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] - * germinal disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003886] - * bilaminar disk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bilaminar_disc] + * bilaminary germ disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:9780878932504 ] + * embryonic disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] + * embryonic shield [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] + * germinal disc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] + * germinal disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003886 ] + * bilaminar disk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bilaminar_disc ] ## Cross-references - * UMLS:C1283997 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bilaminar_Embryonic_Disc] + * UMLS:C1283997 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bilaminar_Embryonic_Disc ] * Wikipedia:Bilaminar_disc * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray21.png/200px-Gray21.png * ncithesaurus:Bilaminar_Embryonic_Disc @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0000391.md b/md/UBERON/91/UBERON_0000391.md index c79039e416..56165905b7 100644 --- a/md/UBERON/91/UBERON_0000391.md +++ b/md/UBERON/91/UBERON_0000391.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000391 * *Label* = leptomeninx - * *Definition* = pia mater or arachnoid mater. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Leptomeninges[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300] + * *Definition* = pia mater or arachnoid mater. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Leptomeninges, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300 ] * *Comment* = AO notes: in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular. Editor notes: check relationship to secondary meninx ## Synonyms - * leptomeninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090207[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * arachnoidea mater et pia mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001634] - * pia-arachnoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001634] + * leptomeninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090207, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * arachnoidea mater et pia mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001634 ] + * pia-arachnoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001634 ] ## Cross-references @@ -20,7 +20,7 @@ * NIF_GrossAnatomy:nlx_anat_090207 * NeuroNames:2347 * SCTID:362303006 - * UMLS:C0228126 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Leptomeninges] + * UMLS:C0228126 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Leptomeninges ] * Wikipedia:Leptomeninges * ncithesaurus:Leptomeninges @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0000491.md b/md/UBERON/91/UBERON_0000491.md index eb635ca28d..fa95da1130 100644 --- a/md/UBERON/91/UBERON_0000491.md +++ b/md/UBERON/91/UBERON_0000491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000491 * *Label* = solid compound organ - * *Definition* = Compound organ that does not contain macroscopic anatomical spaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Compound organ that does not contain macroscopic anatomical spaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0000991.md b/md/UBERON/91/UBERON_0000991.md index 2e0acbc55f..625a4b6543 100644 --- a/md/UBERON/91/UBERON_0000991.md +++ b/md/UBERON/91/UBERON_0000991.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000991 * *Label* = gonad - * *Definition* = Reproductive organ that produces and releases eggs (ovary) or sperm (testis). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0140512888[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonad[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000413[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Reproductive organ that produces and releases eggs (ovary) or sperm (testis). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0140512888, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonad, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000413, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = FMA xref is a 'general anatomical term' ## Synonyms @@ -27,7 +27,7 @@ * OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA * SCTID:304623008 * TAO:0000413 - * UMLS:C0018067 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gonad] + * UMLS:C0018067 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gonad ] * VHOG:0000397 * WBbt:0005175 * Wikipedia:Gonad @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [germ cell](../../CL/86/CL_0000586.md) and [reproductive organ](../../UBERON/33/UBERON_0003133.md) ## Other Logical Axioms @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved.[uncertain][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gonadal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001091.md b/md/UBERON/91/UBERON_0001091.md index 879913301e..18b5de688d 100644 --- a/md/UBERON/91/UBERON_0001091.md +++ b/md/UBERON/91/UBERON_0001091.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001091 * *Label* = calcareous tooth - * *Definition* = Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12516[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tooth[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tooth_(animal)] + * *Definition* = Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12516, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tooth, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tooth_(animal) ] * *Comment* = Editors note: we place ZFA ctb 5 tooth here for now. Consider changing name from calcaeous tooth. Note that sea cucumbers develop calcareous tooth-like structures ## Synonyms @@ -30,7 +30,7 @@ * OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA * SCTID:302214001 * TAO:0001625 - * UMLS:C0040426 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tooth] + * UMLS:C0040426 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tooth ] * VHOG:0001733 * Wikipedia:Tooth * XAO:0000431 @@ -65,8 +65,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The ancestor of recent vertebrate teeth was a tooth-like structure on the outer body surface of jawless fishes.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = dental * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001191.md b/md/UBERON/91/UBERON_0001191.md index c02506773c..960e5aacd1 100644 --- a/md/UBERON/91/UBERON_0001191.md +++ b/md/UBERON/91/UBERON_0001191.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001191 * *Label* = common iliac artery - * *Definition* = The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_iliac_artery] + * *Definition* = The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_iliac_artery ] * *Comment* = See notes for parent class ## Synonyms * common iliac arterial tree - * arteria iliaca communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Common_iliac_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria iliaca communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Common_iliac_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001972 * OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA * SCTID:362050007 - * UMLS:C1261084 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Common_Iliac_Artery] + * UMLS:C1261084 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Common_Iliac_Artery ] * Wikipedia:Common_iliac_artery * http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Iliac_artery_bifurcation_and_aorta.PNG/200px-Iliac_artery_bifurcation_and_aorta.PNG @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001291.md b/md/UBERON/91/UBERON_0001291.md index 7d31becb61..a8072c0310 100644 --- a/md/UBERON/91/UBERON_0001291.md +++ b/md/UBERON/91/UBERON_0001291.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001291 * *Label* = thick ascending limb of loop of Henle - * *Definition* = a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thick_ascending_limb_of_loop_of_Henle] + * *Definition* = a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thick_ascending_limb_of_loop_of_Henle ] * *Comment* = TODO: thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions ## Synonyms * ascending thick limb * distal straight tubule - * loop of Henle ascending limb thick segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001677] + * loop of Henle ascending limb thick segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001677 ] * straight portion of distal convoluted renal tubule - * straight portion of distal convoluted tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17722] + * straight portion of distal convoluted tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17722 ] * thick ascending limb * thick ascending limb of Henle's loop - * thick ascending limb of distal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17722] - * tubulus rectus distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17722] - * tubulus rectus distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thick_ascending_limb_of_loop_of_Henle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * thick ascending limb of distal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17722 ] + * tubulus rectus distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17722 ] + * tubulus rectus distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thick_ascending_limb_of_loop_of_Henle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001391.md b/md/UBERON/91/UBERON_0001391.md index 1bc34069d7..a634103c1c 100644 --- a/md/UBERON/91/UBERON_0001391.md +++ b/md/UBERON/91/UBERON_0001391.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001391 * *Label* = popliteus muscle - * *Definition* = The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteus_muscle] + * *Definition* = The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteus_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,18 +11,18 @@ * m.popliteus * poplitea * popliteal - * popliteal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22590] - * popliteus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22590] - * popliteus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002554] + * popliteal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22590 ] + * popliteus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22590 ] + * popliteus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002554 ] * popliteus muscle - * musculus popliteus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Popliteus_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus popliteus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Popliteus_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:22590 * MA:0002554 * SCTID:245032004 - * UMLS:C0224457 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Popliteus_Muscle] + * UMLS:C0224457 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Popliteus_Muscle ] * Wikipedia:Popliteus_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001491.md b/md/UBERON/91/UBERON_0001491.md index 9504bede89..a4a97f4e11 100644 --- a/md/UBERON/91/UBERON_0001491.md +++ b/md/UBERON/91/UBERON_0001491.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001491 * *Label* = wrist joint - * *Definition* = A joint connecting the forelimb zeugopod skeleton with the carpal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wrist[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?group_id=76834&atid=1205376] + * *Definition* = A joint connecting the forelimb zeugopod skeleton with the carpal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wrist, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?group_id=76834&atid=1205376 ] * *Comment* = AO notes: in FMA this includes radio-carpal and radio-ulnar *ligaments* ## Synonyms - * carpal region joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * joint of carpal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * carpal region joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * joint of carpal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * joint of wrist - * radiocarpal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35291[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * radiocarpal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35291, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A02.835.583.959 * OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA * SCTID:182178002 - * UMLS:C1322271 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Wrist_Joint] + * UMLS:C1322271 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Wrist_Joint ] * Wikipedia:Wrist * galen:WristJoint * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [carpal skeleton](../../UBERON/80/UBERON_0009880.md) and [connects](../../ts/core#connects.md) some [forelimb zeugopod skeleton](../../UBERON/03/UBERON_0010703.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001591.md b/md/UBERON/91/UBERON_0001591.md index d41b03216e..a54b6b7d9f 100644 --- a/md/UBERON/91/UBERON_0001591.md +++ b/md/UBERON/91/UBERON_0001591.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001591 * *Label* = thymic vein - * *Definition* = The veins that drain blood from the thymus into the left brachiocephalic vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Thymic_Vein] + * *Definition* = The veins that drain blood from the thymus into the left brachiocephalic vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Thymic_Vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * thymic tributary of brachiocephalic vein - * vena thymica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae thymicae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena thymica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae thymicae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:4747 * MA:0002246 * SCTID:303432009 - * UMLS:C0226698 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Vein] + * UMLS:C0226698 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Vein ] * Wikipedia:Thymic_veins * ncithesaurus:Thymic_Vein @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [thymus](../../UBERON/70/UBERON_0002370.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001691.md b/md/UBERON/91/UBERON_0001691.md index 560af41c92..de2bcda639 100644 --- a/md/UBERON/91/UBERON_0001691.md +++ b/md/UBERON/91/UBERON_0001691.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001691 * *Label* = external ear - * *Definition* = Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0042473[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_ear] + * *Definition* = Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0042473, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_ear ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * auricular region of head - * outer ear [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000258] + * outer ear [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000258 ] * auricular region - * auris externa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002100] + * auris externa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002100 ] ## Cross-references @@ -31,9 +31,9 @@ * NIF_GrossAnatomy:birnlex_1705 * OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA * SCTID:181176000 - * UMLS:C0013453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1705] - * UMLS:C0013453 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Ear] - * UMLS:C1269548 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1705] + * UMLS:C0013453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1705 ] + * UMLS:C0013453 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Ear ] + * UMLS:C1269548 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1705 ] * VHOG:0000311 * Wikipedia:External_ear * XAO:0000190 @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external part of the organ, which consists of an outer portion (external auditory meatus) which leads to the tympanum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Some species, like Amolops tormotus (Feng etal. 2006), have a cavity in front of the tympanic membrane which is considered to be an ear canal and thus an outer ear. (...) The ancestral lineage of amphibians separated from the mammalian lineage, approximately 350 million years ago, in the paleozoic era. Many of the important developments in the auditory systems emerged after the ancestral paths separated (Manley and Clack 2003). This implies that shared features, like the tympanic middle ear, developed independently in different vertebrate lineages.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001791.md b/md/UBERON/91/UBERON_0001791.md index 32bd4b19ae..e2e27eb3d2 100644 --- a/md/UBERON/91/UBERON_0001791.md +++ b/md/UBERON/91/UBERON_0001791.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001791 * *Label* = inner nuclear layer of retina - * *Definition* = Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005031] + * *Definition* = Cytoarchitectural layer of retina containing closely packed cell bodies, the majority of which are bipolar cells (adapted from Wikipedia). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005031 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * inner nuclear layer - * intermediate cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000119] + * intermediate cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000119 ] * retina inner nuclear layer * retinal inner nuclear layer * stratum nucleare internum * INL - * layer of inner granules [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005031] - * retina, inner nuclear layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Rinl] + * layer of inner granules [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005031 ] + * retina, inner nuclear layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Rinl ] ## Cross-references @@ -27,7 +27,7 @@ * NIF_GrossAnatomy:nlx_anat_1005031 * SCTID:362520009 * TAO:0000119 - * UMLS:C0229211 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Nuclear_Layer] + * UMLS:C0229211 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Nuclear_Layer ] * VHOG:0001167 * XAO:0003221 * ZFA:0000119 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells[BTO:0003176]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001891.md b/md/UBERON/91/UBERON_0001891.md index 2f853286bf..edccd764e2 100644 --- a/md/UBERON/91/UBERON_0001891.md +++ b/md/UBERON/91/UBERON_0001891.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001891 * *Label* = midbrain - * *Definition* = Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61993[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0030901[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midbrain[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61993, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0030901, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midbrain, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Editors note: developmental relationships need revised. AO notes: part of brainstem in ABA - we reject this in favor of ISBN10:0471888893 which has an implicit overlaps relationships ## Synonyms - * MB [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1667[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Midbrain[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * MB [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1667, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Midbrain, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,13 +31,13 @@ * MESH:A08.186.211.132.659 * MIAA:0000106 * NIF_GrossAnatomy:birnlex_1667 - * NeuroNames:462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1667] + * NeuroNames:462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1667 ] * OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA * RETIRED_EHDAA2:0001104 * SCTID:279099009 * TAO:0000128 - * UMLS:C0025462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1667] - * UMLS:C0025462 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesencephalon] + * UMLS:C0025462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1667 ] + * UMLS:C0025462 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesencephalon ] * VHOG:0000069 * Wikipedia:Midbrain * XAO:0000014 @@ -73,8 +73,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesencephalic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0001991.md b/md/UBERON/91/UBERON_0001991.md index e5d8331630..13552d1c8a 100644 --- a/md/UBERON/91/UBERON_0001991.md +++ b/md/UBERON/91/UBERON_0001991.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001991 * *Label* = cervical ganglion - * *Definition* = The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_ganglion] + * *Definition* = The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_ganglion ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002091.md b/md/UBERON/91/UBERON_0002091.md index 60f5eb29c6..2fbbd07509 100644 --- a/md/UBERON/91/UBERON_0002091.md +++ b/md/UBERON/91/UBERON_0002091.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002091 * *Label* = appendicular skeleton - * *Definition* = Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000003[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendicular_skeleton[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000003, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendicular_skeleton, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved. ## Synonyms * appendicular skeleton - * entire appendicular skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/59] - * paired fin skeleton [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * skeleton appendiculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Appendicular_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * entire appendicular skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/59 ] + * paired fin skeleton [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * skeleton appendiculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Appendicular_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MAT:0000278 * MIAA:0000278 * SCTID:322050006 - * UMLS:C0222646 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Appendicular_Skeleton] + * UMLS:C0222646 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Appendicular_Skeleton ] * VHOG:0001666 * VSAO:0000076 * Wikipedia:Appendicular_skeleton @@ -41,7 +41,7 @@ * [subdivision of skeleton](../../UBERON/12/UBERON_0010912.md) * [part_of](../../BFO/50/BFO_0000050.md) some [appendicular skeletal system](../../UBERON/49/UBERON_0011249.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [appendage](../../UBERON/26/UBERON_0000026.md) * [only_in_taxon](../../RO/60/RO_0002160.md) some [Gnathostomata ](../../NCBITaxon/76/NCBITaxon_7776.md) ## Equivalencies @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The pectoral and pelvic girdles, which articulate with the axial skeleton, together with their associated limbs, the forelimbs and hind limbs, form the appendicular skeleton.[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002191.md b/md/UBERON/91/UBERON_0002191.md index af85ce2a5d..f363399d34 100644 --- a/md/UBERON/91/UBERON_0002191.md +++ b/md/UBERON/91/UBERON_0002191.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002191 * *Label* = subiculum - * *Definition* = The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subiculum] + * *Definition* = The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subiculum ] * *Comment* = ABA:SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region ## Synonyms - * subicular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1305] - * subiculum hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74414] - * gyrus parahippocampalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003087] - * striatal cell bridges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SB] - * subiculum cornu ammonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003087] + * subicular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1305 ] + * subiculum hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74414 ] + * gyrus parahippocampalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003087 ] + * striatal cell bridges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SB ] + * subiculum cornu ammonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003087 ] ## Cross-references @@ -27,7 +27,7 @@ * NIF_GrossAnatomy:birnlex_1305 * NeuroNames:188 * SCTID:369097009 - * UMLS:C0152316 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subiculum] + * UMLS:C0152316 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subiculum ] * Wikipedia:Subiculum * http://upload.wikimedia.org/wikipedia/commons/3/31/Hippocampus_%28brain%29.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg @@ -51,8 +51,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = subicular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002291.md b/md/UBERON/91/UBERON_0002291.md index a01d78c2d3..dcbc932750 100644 --- a/md/UBERON/91/UBERON_0002291.md +++ b/md/UBERON/91/UBERON_0002291.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002291 * *Label* = central canal of spinal cord - * *Definition* = Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23409159[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23409159, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen ## Synonyms - * canalis centralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000938] - * central canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000938] + * canalis centralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000938 ] + * central canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000938 ] * central canal of spinal cord * spinal cord central canal - * ventricle of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78497] - * central canal, spinal cord/medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:C] + * ventricle of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78497 ] + * central canal, spinal cord/medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:C ] * neural lumen ## Cross-references @@ -28,7 +28,7 @@ * NeuroNames:1733 * SCTID:279447004 * TAO:0000938 - * UMLS:C0459414 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Central_Canal] + * UMLS:C0459414 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Central_Canal ] * ZFA:0000938 * http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png * ncithesaurus:Central_Canal @@ -57,8 +57,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002220 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002391.md b/md/UBERON/91/UBERON_0002391.md index 8f690b50ca..5669562c16 100644 --- a/md/UBERON/91/UBERON_0002391.md +++ b/md/UBERON/91/UBERON_0002391.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002391 * *Label* = lymph - * *Definition* = Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9671[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph] + * *Definition* = Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9671, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * lympha [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lympha [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A12.207.630 * MIAA:0000055 * OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA - * UMLS:C0024202 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph] + * UMLS:C0024202 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph ] * VHOG:0001590 * Wikipedia:Lymph * ZFA:0005658 @@ -51,8 +51,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002491.md b/md/UBERON/91/UBERON_0002491.md index fcdcdc4486..d9efcd2a57 100644 --- a/md/UBERON/91/UBERON_0002491.md +++ b/md/UBERON/91/UBERON_0002491.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002491 * *Label* = lambdoid suture - * *Definition* = The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lambdoid_suture] + * *Definition* = The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lambdoid_suture ] ## Synonyms * lambdoid suture of skull - * lambdoidal suture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002797] - * sutura lambdoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lambdoid_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sutura lambdoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lambdoid_suture] + * lambdoidal suture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002797 ] + * sutura lambdoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lambdoid_suture ] + * sutura lambdoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lambdoid_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [occipital bone](../../UBERON/76/UBERON_0001676.md) and [connects](../../ts/core#connects.md) some [temporal bone](../../UBERON/78/UBERON_0001678.md) and [connects](../../ts/core#connects.md) some [tetrapod parietal bone](../../UBERON/10/UBERON_0000210.md) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002591.md b/md/UBERON/91/UBERON_0002591.md index 45ee885bab..1541deaf27 100644 --- a/md/UBERON/91/UBERON_0002591.md +++ b/md/UBERON/91/UBERON_0002591.md @@ -6,13 +6,13 @@ ## Synonyms - * Spinal nucleus of the trigeminal oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SPVO] - * nucleus oralis tractus spinalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:835[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus spinalis nervi trigemini, pars oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:835[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * oral part of the spinal trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:835] - * spinal nucleus of the trigeminal, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:835] - * spinal trigeminal nucleus oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Sp5O] - * spinal trigeminal nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:835] + * Spinal nucleus of the trigeminal oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SPVO ] + * nucleus oralis tractus spinalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:835, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus spinalis nervi trigemini, pars oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:835, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * oral part of the spinal trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:835 ] + * spinal nucleus of the trigeminal, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:835 ] + * spinal trigeminal nucleus oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Sp5O ] + * spinal trigeminal nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:835 ] ## Cross-references @@ -22,8 +22,8 @@ * BAMS:Sp5O * FMA:235322 * NIF_GrossAnatomy:birnlex_1100 - * NeuroNames:835 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1100] - * UMLS:C0175417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1100] + * NeuroNames:835 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1100 ] + * UMLS:C0175417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1100 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002691.md b/md/UBERON/91/UBERON_0002691.md index 99acc0903b..22a0493c0e 100644 --- a/md/UBERON/91/UBERON_0002691.md +++ b/md/UBERON/91/UBERON_0002691.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002691 * *Label* = ventral tegmental area - * *Definition* = A group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_tegmental_area] + * *Definition* = A group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_tegmental_area ] ## Synonyms - * ventral tegmental area of tsai [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72438] - * ventral tegmental nucleus (tsai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72438] - * ventral tegmental nucleus of tsai [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72438] - * VTA [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1415[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area tegmentalis ventralis (Tsai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:521[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * area tegmentalis ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:521[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tegmentum ventrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004226] - * ventral brain stem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0004226] - * ventral tegmental area (Tsai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:521] - * ventral tegmental nucleus (Rioch) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:521] - * ventromedial mesencephalic tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1415] + * ventral tegmental area of tsai [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72438 ] + * ventral tegmental nucleus (tsai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72438 ] + * ventral tegmental nucleus of tsai [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72438 ] + * VTA [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1415, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area tegmentalis ventralis (Tsai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:521, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * area tegmentalis ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:521, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tegmentum ventrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004226 ] + * ventral brain stem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0004226 ] + * ventral tegmental area (Tsai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:521 ] + * ventral tegmental nucleus (Rioch) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:521 ] + * ventromedial mesencephalic tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1415 ] ## Cross-references @@ -29,8 +29,8 @@ * GAID:587 * MESH:A08.186.211.132.659.822.820 * NIF_GrossAnatomy:birnlex_1415 - * NeuroNames:521 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1415] - * UMLS:C0175405 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1415] + * NeuroNames:521 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1415 ] + * UMLS:C0175405 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1415 ] * Wikipedia:Ventral_tegmental_area * XAO:0004226 * http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png @@ -55,8 +55,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the mesencephalon that arises from a small area of the neural plate, spanning the midline immediately adjacent, and being slightly posterior to the dorsal tegmentum area[XAO:0004226, PMID:2351962]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002791.md b/md/UBERON/91/UBERON_0002791.md index f70ef6f075..64879b34fc 100644 --- a/md/UBERON/91/UBERON_0002791.md +++ b/md/UBERON/91/UBERON_0002791.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002791 * *Label* = regional part of telencephalon - * *Definition* = A regional part of brain that is part of a telencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A regional part of brain that is part of a telencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * segment of telencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1700] - * telencephalon segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62374] + * segment of telencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1700 ] + * telencephalon segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62374 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002891.md b/md/UBERON/91/UBERON_0002891.md index d661f62376..2d937acc02 100644 --- a/md/UBERON/91/UBERON_0002891.md +++ b/md/UBERON/91/UBERON_0002891.md @@ -6,18 +6,18 @@ ## Synonyms - * posterior cortical amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2700] - * posterior cortical nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61862] - * copula of the pyramis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Cop] - * cortex periamygdaloideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cortical amygdalar area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240] - * cortical amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240] - * nucleus amygdalae corticalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002703] - * nucleus corticalis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior cortical nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ACOP] - * posterior cortical nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Cop] - * ventral cortical amygdaloid nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240] - * ventral cortical nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:240] + * posterior cortical amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2700 ] + * posterior cortical nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61862 ] + * copula of the pyramis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Cop ] + * cortex periamygdaloideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cortical amygdalar area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240 ] + * cortical amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240 ] + * nucleus amygdalae corticalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002703 ] + * nucleus corticalis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior cortical nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ACOP ] + * posterior cortical nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Cop ] + * ventral cortical amygdaloid nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240 ] + * ventral cortical nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:240 ] ## Cross-references @@ -30,8 +30,8 @@ * FMA:61862 * MA:0002924 * NIF_GrossAnatomy:birnlex_2700 - * NeuroNames:240 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2700] - * UMLS:C0175216 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2700] + * NeuroNames:240 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2700 ] + * UMLS:C0175216 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2700 ] ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0002991.md b/md/UBERON/91/UBERON_0002991.md index 11a80dc4f4..1eadc4a78b 100644 --- a/md/UBERON/91/UBERON_0002991.md +++ b/md/UBERON/91/UBERON_0002991.md @@ -7,13 +7,13 @@ ## Synonyms * commissure of forel - * commissure y [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62056] - * postmammillary decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62056] - * supramammillary decussation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62056] - * sumx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_859[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * commissura supramamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura supramammillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * decussation supramamillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * commissure y [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62056 ] + * postmammillary decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62056 ] + * supramammillary decussation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62056 ] + * sumx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_859, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * commissura supramamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura supramammillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * decussation supramamillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,9 +21,9 @@ * BAMS:sumx * FMA:62056 * NIF_GrossAnatomy:birnlex_859 - * NeuroNames:421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_859] + * NeuroNames:421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_859 ] * SCTID:369148003 - * UMLS:C0228379 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_859] + * UMLS:C0228379 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_859 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003091.md b/md/UBERON/91/UBERON_0003091.md index 8f2849e32e..e4e330a1b7 100644 --- a/md/UBERON/91/UBERON_0003091.md +++ b/md/UBERON/91/UBERON_0003091.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003091 * *Label* = thyroid primordium - * *Definition* = The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://emedicine.medscape.com/article/845125-overview] + * *Definition* = The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://emedicine.medscape.com/article/845125-overview ] * *Comment* = In all vertebrates the thyroid arises from the ventral aspect of the second pouch[PMID:16313389]. Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm ## Synonyms @@ -18,7 +18,7 @@ * EMAPA:16361 * EMAPA:16558 * TAO:0001081 - * UMLS:C1519512 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thyroid_Primordium] + * UMLS:C1519512 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thyroid_Primordium ] * XAO:0000444 * ZFA:0001081 * ncithesaurus:Thyroid_Primordium @@ -44,8 +44,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue part of the pharyngeal endoderm that is fated to become thyroid follicle[ZFIN:curator]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003191.md b/md/UBERON/91/UBERON_0003191.md index ecdd746f32..aad4bfb1c4 100644 --- a/md/UBERON/91/UBERON_0003191.md +++ b/md/UBERON/91/UBERON_0003191.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004730 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000993 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003191 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_0003291.md b/md/UBERON/91/UBERON_0003291.md index 5ff0dd14ba..4adfe29516 100644 --- a/md/UBERON/91/UBERON_0003291.md +++ b/md/UBERON/91/UBERON_0003291.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003291 * *Label* = meninx of hindbrain - * *Definition* = A meninx that is part of a hindbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a hindbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editor notes: consider changing genus to subdivision of meninx ## Synonyms - * hindbrain meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindbrain meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * meninges of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * rhomencephalon meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000011[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hindbrain meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindbrain meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * meninges of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * rhomencephalon meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000011, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the hindbrain. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003591.md b/md/UBERON/91/UBERON_0003591.md index afe75c5736..e774a9025a 100644 --- a/md/UBERON/91/UBERON_0003591.md +++ b/md/UBERON/91/UBERON_0003591.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003591 * *Label* = lobar bronchus connective tissue - * *Definition* = A portion of connective tissue that is part of a lobar bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a lobar bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobar bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lobar bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secondary bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of secondary bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobar bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lobar bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secondary bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of secondary bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,15 +34,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus](../../UBERON/83/UBERON_0002183.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003691.md b/md/UBERON/91/UBERON_0003691.md index f36c2585f0..03ee78c8fe 100644 --- a/md/UBERON/91/UBERON_0003691.md +++ b/md/UBERON/91/UBERON_0003691.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003691 * *Label* = epidural space - * *Definition* = The outermost part of the spinal canal. It is the space within the canal (formed by the surrounding vertebrae) lying outside the dura mater. In humans the epidural space contains lymphatics, spinal nerve roots, loose fatty tissue, small arteries, and a network of large, thin-walled blood vessels called the epidural venous plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidural_space] + * *Definition* = The outermost part of the spinal canal. It is the space within the canal (formed by the surrounding vertebrae) lying outside the dura mater. In humans the epidural space contains lymphatics, spinal nerve roots, loose fatty tissue, small arteries, and a network of large, thin-walled blood vessels called the epidural venous plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidural_space ] * *Comment* = AO notes: in the FMA this is treated as a space of the head, but this ontology covers non-humans, where the space may continue into the tail ## Synonyms - * cavum epidurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidural_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cavum extradurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidural_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * extradural space [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71228] - * spatium epidurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidural_space[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * spatium extradurale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71228[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * epidural cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epidural_space] + * cavum epidurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidural_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cavum extradurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidural_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * extradural space [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71228 ] + * spatium epidurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidural_space, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * spatium extradurale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71228, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * epidural cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epidural_space ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebral canal](../../UBERON/92/UBERON_0006692.md) and [surrounds](../../RO/21/RO_0002221.md) some [dura mater](../../UBERON/63/UBERON_0002363.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epidural * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = extradural - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003891.md b/md/UBERON/91/UBERON_0003891.md index 635d298789..8faa3c5da9 100644 --- a/md/UBERON/91/UBERON_0003891.md +++ b/md/UBERON/91/UBERON_0003891.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003891 * *Label* = stroma - * *Definition* = Connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stroma_of_ovary_%28animal_tissue%29] + * *Definition* = Connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stroma_of_ovary_%28animal_tissue%29 ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * FMA:81494 - * UMLS:C0927195 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stroma_Connective_Tissue] + * UMLS:C0927195 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stroma_Connective_Tissue ] * Wikipedia:Stroma_of_ovary_%28animal_tissue%29 * ncithesaurus:Stroma_Connective_Tissue @@ -32,8 +32,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = stromal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0003991.md b/md/UBERON/91/UBERON_0003991.md index d26896883c..55272c93ec 100644 --- a/md/UBERON/91/UBERON_0003991.md +++ b/md/UBERON/91/UBERON_0003991.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003991 * *Label* = fourth ventricle median aperture - * *Definition* = the large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009802[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_aperture] + * *Definition* = the large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009802, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_aperture ] ## Synonyms - * foramen of Magendie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75015] - * foramen of Majendie [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75015] - * fourth ventricle median aperture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002947] - * median aperture of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75015] - * median aperture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009802] - * apertura mediana ventriculi quarti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_aperture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arachnoid forament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002947] + * foramen of Magendie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75015 ] + * foramen of Majendie [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75015 ] + * fourth ventricle median aperture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002947 ] + * median aperture of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75015 ] + * median aperture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009802 ] + * apertura mediana ventriculi quarti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_aperture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arachnoid forament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002947 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0002947 * NeuroNames:641 * SCTID:279449001 - * UMLS:C0152288 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_of_Magendie] + * UMLS:C0152288 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_of_Magendie ] * Wikipedia:Median_aperture * http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004291.md b/md/UBERON/91/UBERON_0004291.md index 6fa5e4508a..fbcf7b0ac5 100644 --- a/md/UBERON/91/UBERON_0004291.md +++ b/md/UBERON/91/UBERON_0004291.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004291 * *Label* = heart rudiment - * *Definition* = a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003313] + * *Definition* = a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003313 ] ## Synonyms - * heart cone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0003313] - * rudimentary heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000115] + * heart cone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0003313 ] + * rudimentary heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000115 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004391.md b/md/UBERON/91/UBERON_0004391.md index ad70fb1f03..34b2e528fa 100644 --- a/md/UBERON/91/UBERON_0004391.md +++ b/md/UBERON/91/UBERON_0004391.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004391 * *Label* = epiphysis of first metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone of digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33793] + * first metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33793 ] * metacarpal 1 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 1](../../UBERON/45/UBERON_0003645.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004491.md b/md/UBERON/91/UBERON_0004491.md index 637e765906..84f3a3f3d1 100644 --- a/md/UBERON/91/UBERON_0004491.md +++ b/md/UBERON/91/UBERON_0004491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004491 * *Label* = cardiac muscle tissue of interatrial septum - * *Definition* = A portion of cardiac muscle tissue that is part of a interatrial septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a interatrial septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interatrial septum](../../UBERON/85/UBERON_0002085.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004691.md b/md/UBERON/91/UBERON_0004691.md index 90d3b7d416..ef7683ae1a 100644 --- a/md/UBERON/91/UBERON_0004691.md +++ b/md/UBERON/91/UBERON_0004691.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004691 * *Label* = bulbourethral gland secretion - * *Definition* = A clear, viscous secretion that helps to lubricate the urethra for spermatozoa to pass through, neutralizing traces of acidic urine in the urethra,[2] and helps flush out any residual urine or foreign matter. It is possible for this fluid to pick up sperm, remaining in the urethral bulb from previous ejaculations, and carry them out prior to the next ejaculation[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bulbourethral_gland#Function] + * *Definition* = A clear, viscous secretion that helps to lubricate the urethra for spermatozoa to pass through, neutralizing traces of acidic urine in the urethra,[2] and helps flush out any residual urine or foreign matter. It is possible for this fluid to pick up sperm, remaining in the urethral bulb from previous ejaculations, and carry them out prior to the next ejaculation[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bulbourethral_gland#Function ] ## Synonyms - * bulbo-urethral gland secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62968] - * pre-ejaculate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pre-ejaculate] - * secretion of bulbo-urethral gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62968] + * bulbo-urethral gland secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62968 ] + * pre-ejaculate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pre-ejaculate ] + * secretion of bulbo-urethral gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62968 ] ## Cross-references * FMA:62968 * MA:0002524 - * UMLS:C1707061 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bulbourethral_Gland_Secretion] + * UMLS:C1707061 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bulbourethral_Gland_Secretion ] * Wikipedia:Bulbourethral_gland#Function * ncithesaurus:Bulbourethral_Gland_Secretion @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [bulbo-urethral gland](../../UBERON/66/UBERON_0002366.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004791.md b/md/UBERON/91/UBERON_0004791.md index aed9a096f1..d332032482 100644 --- a/md/UBERON/91/UBERON_0004791.md +++ b/md/UBERON/91/UBERON_0004791.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004791 * *Label* = thymus trabecula - * *Definition* = A trabecula that is part of a thymus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A trabecula that is part of a thymus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * thymic trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thymus gland trabecula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula of thymus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trabecula of thymus gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * thymic trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thymus gland trabecula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula of thymus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trabecula of thymus gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002674 - * UMLS:C1515431 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thymic_Trabecula] + * UMLS:C1515431 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thymic_Trabecula ] * ncithesaurus:Thymic_Trabecula ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thymus](../../UBERON/70/UBERON_0002370.md) and [trabecula](../../UBERON/40/UBERON_0000440.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0004891.md b/md/UBERON/91/UBERON_0004891.md index 1ee6645ee2..7f60028256 100644 --- a/md/UBERON/91/UBERON_0004891.md +++ b/md/UBERON/91/UBERON_0004891.md @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004891 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_0004991.md b/md/UBERON/91/UBERON_0004991.md index d4d2f4d56f..5f40277b7c 100644 --- a/md/UBERON/91/UBERON_0004991.md +++ b/md/UBERON/91/UBERON_0004991.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004991 * *Label* = mucosa of transverse colon - * *Definition* = A mucosa that is part of a transverse colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a transverse colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of transverse colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of transverse colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of transverse colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transverse colon mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transverse colon mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transverse colon mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * transverse colon organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of transverse colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of transverse colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of transverse colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transverse colon mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transverse colon mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transverse colon mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * transverse colon organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [transverse colon](../../UBERON/57/UBERON_0001157.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005091.md b/md/UBERON/91/UBERON_0005091.md index a58dae7089..9f429c2b44 100644 --- a/md/UBERON/91/UBERON_0005091.md +++ b/md/UBERON/91/UBERON_0005091.md @@ -6,7 +6,7 @@ ## Synonyms - * sinus venosus left horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000488] + * sinus venosus left horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000488 ] ## Cross-references @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005191.md b/md/UBERON/91/UBERON_0005191.md index 83484486b8..1294807f5f 100644 --- a/md/UBERON/91/UBERON_0005191.md +++ b/md/UBERON/91/UBERON_0005191.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005191 * *Label* = obsolete cervical artery - * *Definition* = An artery that is part of a uterine cervix [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An artery that is part of a uterine cervix [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005191 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_0005291.md b/md/UBERON/91/UBERON_0005291.md index af172ce35d..c8740ec5c1 100644 --- a/md/UBERON/91/UBERON_0005291.md +++ b/md/UBERON/91/UBERON_0005291.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005291 * *Label* = embryonic tissue - * *Definition* = A portion of tissue that is part of an embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of tissue that is part of an embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * portion of embryonic tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * portion of embryonic tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * developing tissue ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [embryo](../../UBERON/22/UBERON_0000922.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005391.md b/md/UBERON/91/UBERON_0005391.md index c7d7cf73eb..4fd75ec56f 100644 --- a/md/UBERON/91/UBERON_0005391.md +++ b/md/UBERON/91/UBERON_0005391.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005391 * *Label* = cortical layer II - * *Definition* = Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090808] + * *Definition* = Layer of neocortex lying just deep to molecular layer characterized by numerous small cell bodies. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090808 ] ## Synonyms - * cerebral cortex, layer 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX2] - * external granular layer of isocortex [layer II] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77804] - * external granular layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77804] - * external granule cell layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090808] - * lamina granularis externa isocorticis [lamina ii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77804[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer II of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090808] - * neocortex layer 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090808] - * neocortex layer II [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090808] - * EGL [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * cerebral cortex, layer 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX2 ] + * external granular layer of isocortex [layer II] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77804 ] + * external granular layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77804 ] + * external granule cell layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090808 ] + * lamina granularis externa isocorticis [lamina ii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77804, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer II of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090808 ] + * neocortex layer 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090808 ] + * neocortex layer II [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090808 ] + * EGL [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] * external granular cell layer * external granular layer * external granular layer of cerebral cortex @@ -29,7 +29,7 @@ * MA:0000898 * NIF_GrossAnatomy:nlx_anat_090808 * NeuroNames:2446 - * UMLS:C1517039 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Granular_Layer] + * UMLS:C1517039 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Granular_Layer ] * ncithesaurus:External_Granular_Layer ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005491.md b/md/UBERON/91/UBERON_0005491.md index ec322a47c8..86f98b6e55 100644 --- a/md/UBERON/91/UBERON_0005491.md +++ b/md/UBERON/91/UBERON_0005491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005491 * *Label* = glossopharyngeal neural crest - * *Definition* = Cranial neural crest which gives rise to the glossopharyngeal ganglion. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007066] + * *Definition* = Cranial neural crest which gives rise to the glossopharyngeal ganglion. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007066 ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005591.md b/md/UBERON/91/UBERON_0005591.md index 5423b25cc0..afbca1e751 100644 --- a/md/UBERON/91/UBERON_0005591.md +++ b/md/UBERON/91/UBERON_0005591.md @@ -6,7 +6,7 @@ ## Synonyms - * lateral wall diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000780] + * lateral wall diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000780 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005691.md b/md/UBERON/91/UBERON_0005691.md index beb8fddf42..12ccc13a12 100644 --- a/md/UBERON/91/UBERON_0005691.md +++ b/md/UBERON/91/UBERON_0005691.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005691 * *Label* = 4th arch mesenchyme - * *Definition* = Mesenchyme that is part of a pharyngeal arch 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pharyngeal arch 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * 4th pharyngeal arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001052] + * 4th pharyngeal arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001052 ] * 4th branchial arch mesenchyme * pharyngeal arch 4 mesenchyme @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch 4](../../UBERON/15/UBERON_0003115.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all vertebrates, the pharyngeal apparatus develops from a series of bulges found on the lateral surface of the head, the pharyngeal arches, which consist of a number of different embryonic cell types. Each arch has an external covering of ectoderm and inner covering of endoderm, and between these a mesenchymal filling of neural crest with a central core of mesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005891.md b/md/UBERON/91/UBERON_0005891.md index 6a22f63fcd..62c5c94c27 100644 --- a/md/UBERON/91/UBERON_0005891.md +++ b/md/UBERON/91/UBERON_0005891.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005891 * *Label* = coelomic epithelium - * *Definition* = The epithelial lining of the surface of the coelom. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coelomic_epithelium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000329] + * *Definition* = The epithelial lining of the surface of the coelom. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coelomic_epithelium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000329 ] * *Comment* = AO notes: EHDAA2:0004049 used to be called "coelomic epithelium" but is now "gonadal ridge mesothelium" ## Synonyms * celomic epithelium - * germinal epithelium of Waldeyer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coelomic_epithelium] + * germinal epithelium of Waldeyer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coelomic_epithelium ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0005991.md b/md/UBERON/91/UBERON_0005991.md index 351df2cc49..a0c54f2932 100644 --- a/md/UBERON/91/UBERON_0005991.md +++ b/md/UBERON/91/UBERON_0005991.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005991 * *Label* = aortic valve anulus - * *Definition* = the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010598] + * *Definition* = the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010598 ] ## Synonyms - * anulus of aortic valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9502] - * aortic anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9502] - * aortic valvar anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9502] - * fibrous ring of aortic valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9502] + * anulus of aortic valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9502 ] + * aortic anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9502 ] + * aortic valvar anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9502 ] + * fibrous ring of aortic valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9502 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fibrous ring of heart](../../UBERON/08/UBERON_0006008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [aortic valve](../../UBERON/37/UBERON_0002137.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006091.md b/md/UBERON/91/UBERON_0006091.md index daaf81e439..ff92524f82 100644 --- a/md/UBERON/91/UBERON_0006091.md +++ b/md/UBERON/91/UBERON_0006091.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006091 * *Label* = inferior horn of the lateral ventricle - * *Definition* = The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1292] + * *Definition* = The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1292 ] ## Synonyms - * cornu inferius ventriculi lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83701[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * inferior horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83701] - * inferior horn of the lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1292] - * temporal horn of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1292] + * cornu inferius ventriculi lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83701, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * inferior horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83701 ] + * inferior horn of the lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1292 ] + * temporal horn of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1292 ] ## Cross-references @@ -20,7 +20,7 @@ * NIF_GrossAnatomy:birnlex_1292 * NeuroNames:222 * SCTID:362315005 - * UMLS:C0152283 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1292] + * UMLS:C0152283 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1292 ] ## Subsets @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006291.md b/md/UBERON/91/UBERON_0006291.md index cb1955ce16..a22b64b818 100644 --- a/md/UBERON/91/UBERON_0006291.md +++ b/md/UBERON/91/UBERON_0006291.md @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [scapula endochondral element](../../UBERON/57/UBERON_0015057.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006491.md b/md/UBERON/91/UBERON_0006491.md index 1e3959e942..91ed94b4d4 100644 --- a/md/UBERON/91/UBERON_0006491.md +++ b/md/UBERON/91/UBERON_0006491.md @@ -6,16 +6,16 @@ ## Synonyms - * C5 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71183] - * C5 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_760] - * fifth cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_760] + * C5 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71183 ] + * C5 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_760 ] + * fifth cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_760 ] ## Cross-references * FMA:71183 * NIF_GrossAnatomy:birnlex_760 * SCTID:278758002 - * UMLS:C0457855 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_760] + * UMLS:C0457855 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_760 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006591.md b/md/UBERON/91/UBERON_0006591.md index 874ed9930a..6680810647 100644 --- a/md/UBERON/91/UBERON_0006591.md +++ b/md/UBERON/91/UBERON_0006591.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006591 * *Label* = transformed artery - * *Definition* = A vestigial embryonic structure that develops_from a artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vestigial embryonic structure that develops_from a artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [immediate_transformation_of](../../SIO/58/SIO_000658.md) some [artery](../../UBERON/37/UBERON_0001637.md) and [vestigial embryonic structure](../../UBERON/90/UBERON_0006590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006691.md b/md/UBERON/91/UBERON_0006691.md index bd16f2d32d..2ab10186b0 100644 --- a/md/UBERON/91/UBERON_0006691.md +++ b/md/UBERON/91/UBERON_0006691.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006691 * *Label* = tentorium cerebelli - * *Definition* = The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tentorium_cerebelli] + * *Definition* = The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tentorium_cerebelli ] ## Synonyms - * cerebellar tentorium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83966] + * cerebellar tentorium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83966 ] ## Cross-references @@ -15,7 +15,7 @@ * FMA:83966 * NeuroNames:1240 * SCTID:244428008 - * UMLS:C0228121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tentorium_Cerebelli] + * UMLS:C0228121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tentorium_Cerebelli ] * VHOG:0001298 * Wikipedia:Tentorium_cerebelli * http://upload.wikimedia.org/wikipedia/commons/b/b7/Illu_tentorium.jpg @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The tentorium cerebelli or cerebellar tentorium (Latin: [][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0006791.md b/md/UBERON/91/UBERON_0006791.md index 6dc158513a..4f1a05028f 100644 --- a/md/UBERON/91/UBERON_0006791.md +++ b/md/UBERON/91/UBERON_0006791.md @@ -6,10 +6,10 @@ ## Synonyms - * subcallosal stratum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCS] - * superficial grey and white zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000686] - * superficial grey and white zones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000686[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * superior colliculus, superficial layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCS] + * subcallosal stratum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCS ] + * superficial grey and white zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000686 ] + * superficial grey and white zones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000686, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * superior colliculus, superficial layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCS ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007191.md b/md/UBERON/91/UBERON_0007191.md index d8eb213a51..3bb5f502dc 100644 --- a/md/UBERON/91/UBERON_0007191.md +++ b/md/UBERON/91/UBERON_0007191.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007291.md b/md/UBERON/91/UBERON_0007291.md index 07b629cc1e..07a4645e0e 100644 --- a/md/UBERON/91/UBERON_0007291.md +++ b/md/UBERON/91/UBERON_0007291.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007291 * *Label* = presumptive rhombomere 4 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 4](../../UBERON/11/UBERON_0005511.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007391.md b/md/UBERON/91/UBERON_0007391.md index b09654faa0..3fc71dab3f 100644 --- a/md/UBERON/91/UBERON_0007391.md +++ b/md/UBERON/91/UBERON_0007391.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007391 * *Label* = pelvic appendage cartilage tissue - * *Definition* = A cartilage tissue that is part of a pelvic appendage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilage tissue that is part of a pelvic appendage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pelvic fin cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001459] + * pelvic fin cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001459 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage which is part of the pelvic fin.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007491.md b/md/UBERON/91/UBERON_0007491.md index 275f4bfed6..c1266e353a 100644 --- a/md/UBERON/91/UBERON_0007491.md +++ b/md/UBERON/91/UBERON_0007491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007491 * *Label* = chitin-based acellular structure - * *Definition* = Acellular anatomical structure whose predominant constituent is chitin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = Acellular anatomical structure whose predominant constituent is chitin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acellular anatomical structure](../../UBERON/76/UBERON_0000476.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [chitin](../../CHEBI/29/CHEBI_17029.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003100 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007691.md b/md/UBERON/91/UBERON_0007691.md index 2cac7e7825..ce6048fccc 100644 --- a/md/UBERON/91/UBERON_0007691.md +++ b/md/UBERON/91/UBERON_0007691.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007691 * *Label* = gustatory pore - * *Definition* = The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?gustatory+pore] + * *Definition* = The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?gustatory+pore ] ## Synonyms - * porus gustatorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?gustatory+pore] - * taste pore [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63589] + * porus gustatorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?gustatory+pore ] + * taste pore [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63589 ] ## Cross-references * FMA:63589 * SCTID:368724008 - * UMLS:C0226971 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Taste_Pore] + * UMLS:C0226971 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Taste_Pore ] * http://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg * ncithesaurus:Taste_Pore @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [orifice](../../UBERON/61/UBERON_0000161.md) and [part_of](../../BFO/50/BFO_0000050.md) some [taste bud](../../UBERON/27/UBERON_0001727.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0007991.md b/md/UBERON/91/UBERON_0007991.md index 4520a30c17..c0c0db0d9d 100644 --- a/md/UBERON/91/UBERON_0007991.md +++ b/md/UBERON/91/UBERON_0007991.md @@ -6,7 +6,7 @@ ## Synonyms - * proximal sesamoid bone of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001377] + * proximal sesamoid bone of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001377 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0008291.md b/md/UBERON/91/UBERON_0008291.md index 6c4a5a6793..7c6d1d211a 100644 --- a/md/UBERON/91/UBERON_0008291.md +++ b/md/UBERON/91/UBERON_0008291.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008291 * *Label* = down feather - * *Definition* = A feather lacking a vane and having a rudimentary rachis and a tuft of non-interlocked barbs with elongated barbules extending from the calamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Down_feather[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * *Definition* = A feather lacking a vane and having a rudimentary rachis and a tuft of non-interlocked barbs with elongated barbules extending from the calamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Down_feather, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] * *Comment* = lacks vane ## Synonyms - * downy feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * plumaceous feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] - * plumulaceous feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * downy feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * plumaceous feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] + * plumulaceous feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0008591.md b/md/UBERON/91/UBERON_0008591.md index aafb5ed74c..3729bc7775 100644 --- a/md/UBERON/91/UBERON_0008591.md +++ b/md/UBERON/91/UBERON_0008591.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008591 * *Label* = depressor supercilii - * *Definition* = The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_supercilii_muscle] + * *Definition* = The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_supercilii_muscle ] ## Synonyms - * depressor supercilii muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_supercilii_muscle] - * musculus depressor supercilii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_supercilii_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * depressor supercilii muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_supercilii_muscle ] + * musculus depressor supercilii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_supercilii_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0008791.md b/md/UBERON/91/UBERON_0008791.md index 0b3c0cda3c..cc0d2688e0 100644 --- a/md/UBERON/91/UBERON_0008791.md +++ b/md/UBERON/91/UBERON_0008791.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008791 * *Label* = rugal fold of stomach - * *Definition* = A rugal fold that is part of a stomach. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rugal fold that is part of a stomach. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * gastric ruga [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15106] - * gastric rugae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15106[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ruga of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15106] - * gastric ruga(e) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15106] + * gastric ruga [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15106 ] + * gastric rugae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15106, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ruga of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15106 ] + * gastric ruga(e) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15106 ] ## Cross-references * FMA:15106 * SCTID:268518001 - * UMLS:C0227199 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Rugae] + * UMLS:C0227199 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Rugae ] * ncithesaurus:Gastric_Rugae ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) and [rugal fold](../../UBERON/90/UBERON_0008790.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0008891.md b/md/UBERON/91/UBERON_0008891.md index 8d7ddcd9db..489187bcd0 100644 --- a/md/UBERON/91/UBERON_0008891.md +++ b/md/UBERON/91/UBERON_0008891.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008891 * *Label* = external gill - * *Definition* = External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004689[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:External_gills] + * *Definition* = External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004689, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:External_gills ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes. Instead, the respiratory organs are set on a frill of stalks protruding from the sides of an animals head. This type of gill is most commonly observed on the aquatic larva of most species of salamanders, lungfish, and bichirs (which have only one large pair), and are retained by neotenic adult salamanders and some species of adult lungfish. They are present on non-transforming salamander species such as the mudpuppy, as well as most members of the Proteidae and Sirenidae families, which naturally never metamorphose into an air-breathing form. The embryos of frogs and caecilians also develop external gills at some point in their development, though these are either resorbed before or disappear shortly after hatching. Fossils of the distant relatives of modern amphibians, such as Branchiosaurus and Apateon, also show evidence of external gills. The external gills commonly consist of a single stalk (rami) protruding from a gill arch behind the head of the animal, above an associated gill slit. The stalk usually contains muscle tissue, and may be moved by the animal as a free appendage, in order to stir up stagnant water. The stalk is lined by many thinly walled filaments (fimbriae), containing the majority of blood vessels used in gas exchange. Animals usually have one external gill originating on each gill arch (except the hyoid), which leads to there being three pairs of external gills in salamanders, and four in the gilled larvae of lungfish[Wikipedia:External_gills]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009091.md b/md/UBERON/91/UBERON_0009091.md index f22b098e9c..259eaf8475 100644 --- a/md/UBERON/91/UBERON_0009091.md +++ b/md/UBERON/91/UBERON_0009091.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009191.md b/md/UBERON/91/UBERON_0009191.md index c16a812c10..44edc186b4 100644 --- a/md/UBERON/91/UBERON_0009191.md +++ b/md/UBERON/91/UBERON_0009191.md @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [sphenoid endochondral element](../../UBERON/60/UBERON_0015060.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009291.md b/md/UBERON/91/UBERON_0009291.md index 970d067142..2b71134b57 100644 --- a/md/UBERON/91/UBERON_0009291.md +++ b/md/UBERON/91/UBERON_0009291.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009591.md b/md/UBERON/91/UBERON_0009591.md index e02a5b38b9..65522921e4 100644 --- a/md/UBERON/91/UBERON_0009591.md +++ b/md/UBERON/91/UBERON_0009591.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009591 * *Label* = mesenchyme of interdigital region between pedal digits 2 and 3 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 2 and 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between toes 2 and 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000861] + * interdigital region between toes 2 and 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000861 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between pedal digits 2 and 3](../../UBERON/41/UBERON_0006041.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009891.md b/md/UBERON/91/UBERON_0009891.md index dbb884e882..48c629fea2 100644 --- a/md/UBERON/91/UBERON_0009891.md +++ b/md/UBERON/91/UBERON_0009891.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009891 * *Label* = facial mesenchyme - * *Definition* = Mesenchyme that is part of a face. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a face. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [face](../../UBERON/56/UBERON_0001456.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0009991.md b/md/UBERON/91/UBERON_0009991.md index f8ac1ffb91..83869e40e8 100644 --- a/md/UBERON/91/UBERON_0009991.md +++ b/md/UBERON/91/UBERON_0009991.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009991 * *Label* = lateral condyle of tibia - * *Definition* = The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_tibia] + * *Definition* = The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_tibia ] ## Synonyms - * condylus lateralis (tibia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35448] - * c. lateralis tibiae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_condyle_of_tibia[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * condylus lateralis (tibia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35448 ] + * c. lateralis tibiae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_condyle_of_tibia, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009991 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0010091.md b/md/UBERON/91/UBERON_0010091.md index 85ef7d1060..fe0820959d 100644 --- a/md/UBERON/91/UBERON_0010091.md +++ b/md/UBERON/91/UBERON_0010091.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010091 * *Label* = future hindbrain meninges - * *Definition* = A multi-tissue structure that has_potential_to_develop_into a meninx of hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A multi-tissue structure that has_potential_to_develop_into a meninx of hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [meninx of hindbrain](../../UBERON/91/UBERON_0003291.md) and [multi-tissue structure](../../UBERON/81/UBERON_0000481.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0010191.md b/md/UBERON/91/UBERON_0010191.md index 674c79cd9f..8150b6651d 100644 --- a/md/UBERON/91/UBERON_0010191.md +++ b/md/UBERON/91/UBERON_0010191.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0010291.md b/md/UBERON/91/UBERON_0010291.md index 58cd4fd0e8..025a9ea2ac 100644 --- a/md/UBERON/91/UBERON_0010291.md +++ b/md/UBERON/91/UBERON_0010291.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010291 * *Label* = layer of sclera - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sclera#Histology] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sclera#Histology ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0010391.md b/md/UBERON/91/UBERON_0010391.md index 22569ae32f..e96925c587 100644 --- a/md/UBERON/91/UBERON_0010391.md +++ b/md/UBERON/91/UBERON_0010391.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010391 * *Label* = parametrium - * *Definition* = In women, the supravaginal portion of the cervix is separated in front from the bladder by fibrous tissue, the parametrium, which extends also on to its sides and laterally between the layers of the broad ligaments. The uterine artery and ovarian ligament are located in the parametrium. Inflammation causes Parametritis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parametrium] + * *Definition* = In women, the supravaginal portion of the cervix is separated in front from the bladder by fibrous tissue, the parametrium, which extends also on to its sides and laterally between the layers of the broad ligaments. The uterine artery and ovarian ligament are located in the parametrium. Inflammation causes Parametritis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parametrium ] * *Comment* = subserous coat of the uterus laterally between the layers of the broad ligament[MP] - todo - check relationships ## Synonyms @@ -13,7 +13,7 @@ * FMA:77061 * SCTID:280455005 - * UMLS:C0227822 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parametrium] + * UMLS:C0227822 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parametrium ] * Wikipedia:Parametrium * ncithesaurus:Parametrium @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0010891.md b/md/UBERON/91/UBERON_0010891.md index 514093bd5f..64995dcdf5 100644 --- a/md/UBERON/91/UBERON_0010891.md +++ b/md/UBERON/91/UBERON_0010891.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010891 * *Label* = pectoral complex muscle - * *Definition* = A muscle of a pectoral girdle, pectoral fin or anterior limb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A muscle of a pectoral girdle, pectoral fin or anterior limb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: the MA class belongs here, based on its current child classes ## Synonyms - * pectoral girdle and fore limb muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010687] - * muscle of pectoral girdle and wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * muscle of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9621[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * upper limb muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9621[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * pectoral girdle and fore limb muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010687 ] + * muscle of pectoral girdle and wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * muscle of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9621, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * upper limb muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9621, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * muscle of pectoral girdle and limb ## Cross-references @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscles of the pectoral girdle, arm, forearm, and hand (brachium, antebrachium, manus respectively).[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0011091.md b/md/UBERON/91/UBERON_0011091.md index 4284c2a0dd..9e841a8c7e 100644 --- a/md/UBERON/91/UBERON_0011091.md +++ b/md/UBERON/91/UBERON_0011091.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011091 * *Label* = skeleton of left pelvic girdle - * *Definition* = A skeleton of pelvic girdle that is part of a left pelvic girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A skeleton of pelvic girdle that is part of a left pelvic girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left pelvic girdle region](../../UBERON/93/UBERON_0011093.md) and [pelvic girdle skeleton](../../UBERON/32/UBERON_0007832.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0011191.md b/md/UBERON/91/UBERON_0011191.md index 92e950b0ce..2708a6ca5c 100644 --- a/md/UBERON/91/UBERON_0011191.md +++ b/md/UBERON/91/UBERON_0011191.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011191 * *Label* = ophthalmic vein - * *Definition* = Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_veins] + * *Definition* = Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_veins ] ## Synonyms - * opthalmic vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004113] - * vena ophthalmica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ophthalmic_veins] + * opthalmic vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004113 ] + * vena ophthalmica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ophthalmic_veins ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0011391.md b/md/UBERON/91/UBERON_0011391.md index 73176070ff..5c8f793ad2 100644 --- a/md/UBERON/91/UBERON_0011391.md +++ b/md/UBERON/91/UBERON_0011391.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011391 * *Label* = perineal nerve - * *Definition* = a nerve arising from the pudendal nerve that supplies the perineum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perineal_nerve] + * *Definition* = a nerve arising from the pudendal nerve that supplies the perineum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perineal_nerve ] ## Synonyms - * perineal branch of pudendal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21866] + * perineal branch of pudendal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21866 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0011591.md b/md/UBERON/91/UBERON_0011591.md index 96ac83f2f6..2a351b69b0 100644 --- a/md/UBERON/91/UBERON_0011591.md +++ b/md/UBERON/91/UBERON_0011591.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011591 * *Label* = tract of diencephalon - * *Definition* = An axon tract that is part of a diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An axon tract that is part of a diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * diencephalon tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62447] + * diencephalon tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62447 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [axon tract](../../UBERON/18/UBERON_0001018.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0012291.md b/md/UBERON/91/UBERON_0012291.md index b5080da704..6857fd605a 100644 --- a/md/UBERON/91/UBERON_0012291.md +++ b/md/UBERON/91/UBERON_0012291.md @@ -6,11 +6,11 @@ ## Synonyms - * lateral malleolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35502] - * malleolar bone [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * malleolar bone of ankle [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * distal extremity of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Malleolus#Lateral_malleolus] - * external malleolus of fibula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Malleolus#Lateral_malleolus] + * lateral malleolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35502 ] + * malleolar bone [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * malleolar bone of ankle [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * distal extremity of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Malleolus#Lateral_malleolus ] + * external malleolus of fibula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Malleolus#Lateral_malleolus ] * fibular malleolus ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = In bovids, the distal end of the fibula is present only as the lateral malleolus, a separate bone that articulates with the lateral side of the distal tibia. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012291 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0013191.md b/md/UBERON/91/UBERON_0013191.md index 723550c701..8d77dd30bb 100644 --- a/md/UBERON/91/UBERON_0013191.md +++ b/md/UBERON/91/UBERON_0013191.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013191 * *Label* = ovarian cortex - * *Definition* = The outer layer of the ovary, composed of cellular connective tissue which contains the ovarian follicles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Ovarian_Cortex] + * *Definition* = The outer layer of the ovary, composed of cellular connective tissue which contains the ovarian follicles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Ovarian_Cortex ] ## Synonyms - * cortex of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18613] - * cortex ovarii (zona parenchymatosa) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18613] + * cortex of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18613 ] + * cortex ovarii (zona parenchymatosa) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18613 ] ## Cross-references * FMA:18613 - * UMLS:C0227878 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Cortex] + * UMLS:C0227878 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Cortex ] * ncithesaurus:Ovarian_Cortex ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cortex](../../UBERON/51/UBERON_0001851.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013191 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0013491.md b/md/UBERON/91/UBERON_0013491.md index f1fa705501..94aba6e25e 100644 --- a/md/UBERON/91/UBERON_0013491.md +++ b/md/UBERON/91/UBERON_0013491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013491 * *Label* = cervical fascia - * *Definition* = The cervical fascia is fascia found in the region of the neck. It mainly refers to the deep cervical fascia. However, there are other cervical fascia: superficial cervical fascia prevertebral fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cervical_fascia] + * *Definition* = The cervical fascia is fascia found in the region of the neck. It mainly refers to the deep cervical fascia. However, there are other cervical fascia: superficial cervical fascia prevertebral fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cervical_fascia ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fascia](../../UBERON/82/UBERON_0008982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neck](../../UBERON/74/UBERON_0000974.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0013591.md b/md/UBERON/91/UBERON_0013591.md index 1d939a8cd5..bdfd791e2a 100644 --- a/md/UBERON/91/UBERON_0013591.md +++ b/md/UBERON/91/UBERON_0013591.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0013691.md b/md/UBERON/91/UBERON_0013691.md index 086083d286..ff80c84cee 100644 --- a/md/UBERON/91/UBERON_0013691.md +++ b/md/UBERON/91/UBERON_0013691.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013691 * *Label* = buttock - * *Definition* = The buttocks are rounded portions of the anatomy located on the posterior of the pelvic region of apes and humans, including many other bipeds or quadrupeds. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buttocks] + * *Definition* = The buttocks are rounded portions of the anatomy located on the posterior of the pelvic region of apes and humans, including many other bipeds or quadrupeds. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buttocks ] ## Synonyms - * clunis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25245] - * gluteal part of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25245] - * gluteal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:25245] - * regio glutealis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * buttocks [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Buttocks[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * clunis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25245 ] + * gluteal part of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25245 ] + * gluteal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:25245 ] + * regio glutealis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * buttocks [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Buttocks, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:25245 * MESH:A01.378.610.100 * SCTID:362677002 - * UMLS:C0006497 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Buttock] + * UMLS:C0006497 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Buttock ] * Wikipedia:Buttocks * ncithesaurus:Buttock @@ -44,8 +44,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = gluteal * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_76446 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014391.md b/md/UBERON/91/UBERON_0014391.md index 6783e69b1a..2805c97671 100644 --- a/md/UBERON/91/UBERON_0014391.md +++ b/md/UBERON/91/UBERON_0014391.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014391 * *Label* = palmar/plantar sweat gland - * *Definition* = A sweat gland that is part of the skin of the palmar part of the manus or plantar part of the pes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A sweat gland that is part of the skin of the palmar part of the manus or plantar part of the pes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = Taxon notes: in mice these are the only sweat glands present[MP:0000675] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [palmar/plantar part of autopod](../../UBERON/37/UBERON_0008837.md) and [sweat gland](../../UBERON/20/UBERON_0001820.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014491.md b/md/UBERON/91/UBERON_0014491.md index 51ab91d595..a9fe33d4b7 100644 --- a/md/UBERON/91/UBERON_0014491.md +++ b/md/UBERON/91/UBERON_0014491.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014491 * *Label* = middle phalanx of digit 5 - * *Definition* = A middle phalanx that is part of a digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = A middle phalanx that is part of a digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [middle phalanx](../../UBERON/01/UBERON_0004301.md) and [part_of](../../BFO/50/BFO_0000050.md) some [digit 5](../../UBERON/52/UBERON_0006052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014491 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014591.md b/md/UBERON/91/UBERON_0014591.md index dbcda3c197..3f3707eedf 100644 --- a/md/UBERON/91/UBERON_0014591.md +++ b/md/UBERON/91/UBERON_0014591.md @@ -6,11 +6,11 @@ ## Synonyms - * anterior nucleus of hypothalamus posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * AHNp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1125[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior hypothalamic nucleus posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNp] - * anterior hypothalamic nucleus, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNp] - * anterior hypothalamic posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNp] + * anterior nucleus of hypothalamus posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * AHNp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1125, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior hypothalamic nucleus posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNp ] + * anterior hypothalamic nucleus, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNp ] + * anterior hypothalamic posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNp ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014591 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014691.md b/md/UBERON/91/UBERON_0014691.md index 19b73ed68e..92d30230ac 100644 --- a/md/UBERON/91/UBERON_0014691.md +++ b/md/UBERON/91/UBERON_0014691.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014691 * *Label* = right gastric vein - * *Definition* = The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_gastric_vein] + * *Definition* = The right gastric vein, also known as the pyloric vein, drains blood from the lesser curvature of the stomach into the hepatic portal vein. It is part of the portal circulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_gastric_vein ] ## Synonyms - * vena gastrica dextra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_gastric_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pyloric vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Right_gastric_vein] + * vena gastrica dextra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_gastric_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pyloric vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Right_gastric_vein ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gastric vein](../../UBERON/50/UBERON_0004450.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014691 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014791.md b/md/UBERON/91/UBERON_0014791.md index 563b0c4533..7b198de622 100644 --- a/md/UBERON/91/UBERON_0014791.md +++ b/md/UBERON/91/UBERON_0014791.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014791 * *Label* = musculature of forelimb stylopod - * *Definition* = Any collection of muscles that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * muscle group of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * musculature of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * set of muscles of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50202[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * arm musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * muscle group of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * musculature of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * set of muscles of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50202, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb stylopod](../../UBERON/22/UBERON_0003822.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014791 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0014891.md b/md/UBERON/91/UBERON_0014891.md index 88635d12a6..15a755f985 100644 --- a/md/UBERON/91/UBERON_0014891.md +++ b/md/UBERON/91/UBERON_0014891.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014891 * *Label* = brainstem white matter - * *Definition* = White matter that is part of a brainstem [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = White matter that is part of a brainstem [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [brainstem](../../UBERON/98/UBERON_0002298.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014891 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_0015091.md b/md/UBERON/91/UBERON_0015091.md index 96eb950314..7ef75733e5 100644 --- a/md/UBERON/91/UBERON_0015091.md +++ b/md/UBERON/91/UBERON_0015091.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal bone 3 endochondral element](../../UBERON/90/UBERON_0015090.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015091 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2000291.md b/md/UBERON/91/UBERON_2000291.md index 6ce16639d9..a3b1882daa 100644 --- a/md/UBERON/91/UBERON_2000291.md +++ b/md/UBERON/91/UBERON_2000291.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000291 * *Label* = medial octavolateralis nucleus - * *Definition* = Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000291] + * *Definition* = Lateral line sensory nucleus located in the cerebellum that processes sensory input from the lateral line. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000291 ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2000391.md b/md/UBERON/91/UBERON_2000391.md index 6111c2e9bf..203c8829c9 100644 --- a/md/UBERON/91/UBERON_2000391.md +++ b/md/UBERON/91/UBERON_2000391.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_2000491.md b/md/UBERON/91/UBERON_2000491.md index 3c95bca238..20ba62ad3a 100644 --- a/md/UBERON/91/UBERON_2000491.md +++ b/md/UBERON/91/UBERON_2000491.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2000691.md b/md/UBERON/91/UBERON_2000691.md index 5b1b0294e7..32157523be 100644 --- a/md/UBERON/91/UBERON_2000691.md +++ b/md/UBERON/91/UBERON_2000691.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000691 * *Label* = supraorbital bone - * *Definition* = Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = The supraorbital bone may be present as two or one bone in extant teleosts, although many of the advanced forms lack the bone. ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2000791.md b/md/UBERON/91/UBERON_2000791.md index f874cfc52e..4ce8119b7b 100644 --- a/md/UBERON/91/UBERON_2000791.md +++ b/md/UBERON/91/UBERON_2000791.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 13 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000791[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 13 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000791, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_2000891.md b/md/UBERON/91/UBERON_2000891.md index 1cff493fe5..7c2f30e31e 100644 --- a/md/UBERON/91/UBERON_2000891.md +++ b/md/UBERON/91/UBERON_2000891.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000891 * *Label* = hypaxial region somite 1 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2000991.md b/md/UBERON/91/UBERON_2000991.md index 452e68bd29..b9a0c4b69c 100644 --- a/md/UBERON/91/UBERON_2000991.md +++ b/md/UBERON/91/UBERON_2000991.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000991 * *Label* = epaxial region somite 10 - * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2001191.md b/md/UBERON/91/UBERON_2001191.md index c02452a8e9..83fb737270 100644 --- a/md/UBERON/91/UBERON_2001191.md +++ b/md/UBERON/91/UBERON_2001191.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001191 * *Label* = supraneural 2 bone - * *Definition* = Supraneural bone located dorsal to vertebra 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Supraneural bone located dorsal to vertebra 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = In otophysans, supraneural 2 bone is part of the neural complex. ## Synonyms - * small supraneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:doi:10.1046/j.1096-3642.2002.00014.x] - * sn2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001191] + * small supraneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:doi:10.1046/j.1096-3642.2002.00014.x ] + * sn2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001191 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2001391.md b/md/UBERON/91/UBERON_2001391.md index 9754ba6202..afe72126a5 100644 --- a/md/UBERON/91/UBERON_2001391.md +++ b/md/UBERON/91/UBERON_2001391.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001391 * *Label* = anterior lateral line ganglion - * *Definition* = The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * anterior lateral line ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001391[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * anterior lateral line ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001391, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,16 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lateral line ganglion](../../UBERON/20/UBERON_2000120.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior lateral line system](../../UBERON/68/UBERON_2001468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:2001391 + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2001691.md b/md/UBERON/91/UBERON_2001691.md index a7d4a11390..b611b1fd65 100644 --- a/md/UBERON/91/UBERON_2001691.md +++ b/md/UBERON/91/UBERON_2001691.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001691 * *Label* = posterior cartilage of palatine - * *Definition* = posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2001991.md b/md/UBERON/91/UBERON_2001991.md index 6d22391359..ee2d2c8a59 100644 --- a/md/UBERON/91/UBERON_2001991.md +++ b/md/UBERON/91/UBERON_2001991.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001991 * *Label* = lateral bone - * *Definition* = Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2002091.md b/md/UBERON/91/UBERON_2002091.md index 7e052dcd98..12e66043e3 100644 --- a/md/UBERON/91/UBERON_2002091.md +++ b/md/UBERON/91/UBERON_2002091.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002091 * *Label* = median caudal cartilage - * *Definition* = Cartilage associated with hypurals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Cartilage associated with hypurals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Definition from Johnson and Patterson 1993. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2002291.md b/md/UBERON/91/UBERON_2002291.md index cb44abd0ce..41b2c49a20 100644 --- a/md/UBERON/91/UBERON_2002291.md +++ b/md/UBERON/91/UBERON_2002291.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002291 * *Label* = fulcrum - * *Definition* = Dermal bone that is typically associated with a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is typically associated with a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_2005191.md b/md/UBERON/91/UBERON_2005191.md index a14a4b0ecf..235fd6cc34 100644 --- a/md/UBERON/91/UBERON_2005191.md +++ b/md/UBERON/91/UBERON_2005191.md @@ -6,7 +6,7 @@ ## Synonyms - * middle ventral 2 neuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005191] + * middle ventral 2 neuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005191 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_3000291.md b/md/UBERON/91/UBERON_3000291.md index 555fdcd93a..b1b160f45a 100644 --- a/md/UBERON/91/UBERON_3000291.md +++ b/md/UBERON/91/UBERON_3000291.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000291 * *Label* = medial orbitonasal foramen - * *Definition* = Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Opening on the postnasal wall for the medial branch (= ramus medialis nasi) of the ophthalmicus nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_3000591.md b/md/UBERON/91/UBERON_3000591.md index 730e0a6d29..067562c646 100644 --- a/md/UBERON/91/UBERON_3000591.md +++ b/md/UBERON/91/UBERON_3000591.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000591 * *Label* = suprasphenoid - * *Definition* = Endochondral ossification of the dorsomedial portion of the braincase. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Endochondral ossification of the dorsomedial portion of the braincase. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_3000991.md b/md/UBERON/91/UBERON_3000991.md index eac0284715..c08d73262f 100644 --- a/md/UBERON/91/UBERON_3000991.md +++ b/md/UBERON/91/UBERON_3000991.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_3010091.md b/md/UBERON/91/UBERON_3010091.md index 8a7356578e..8001a0d13f 100644 --- a/md/UBERON/91/UBERON_3010091.md +++ b/md/UBERON/91/UBERON_3010091.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_3010191.md b/md/UBERON/91/UBERON_3010191.md index 9ad1c36c50..028d4bdfd2 100644 --- a/md/UBERON/91/UBERON_3010191.md +++ b/md/UBERON/91/UBERON_3010191.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_3010291.md b/md/UBERON/91/UBERON_3010291.md index f922f694c6..ea88c14ad0 100644 --- a/md/UBERON/91/UBERON_3010291.md +++ b/md/UBERON/91/UBERON_3010291.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000300 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/91/UBERON_3010691.md b/md/UBERON/91/UBERON_3010691.md index 5dc85709eb..1373d48395 100644 --- a/md/UBERON/91/UBERON_3010691.md +++ b/md/UBERON/91/UBERON_3010691.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010691 * *Label* = m. opercularis - * *Definition* = Muscle which arises from the dorsal m. levator scapulae and extends between the operculum and suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which arises from the dorsal m. levator scapulae and extends between the operculum and suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/91/UBERON_4200091.md b/md/UBERON/91/UBERON_4200091.md index 1e5562645c..4679d3c577 100644 --- a/md/UBERON/91/UBERON_4200091.md +++ b/md/UBERON/91/UBERON_4200091.md @@ -31,7 +31,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0000092.md b/md/UBERON/92/UBERON_0000092.md index 63bceedc5a..415237cfb1 100644 --- a/md/UBERON/92/UBERON_0000092.md +++ b/md/UBERON/92/UBERON_0000092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000092 * *Label* = post-embryonic stage - * *Definition* = stage succeeding embryo, including mature structure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = stage succeeding embryo, including mature structure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = In birds, the postnatal stage begins when the beak penetrates the shell (i.e., external pipping) (Brown et al. 1997) ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0000392.md b/md/UBERON/92/UBERON_0000392.md index 0d5992affc..f22d05db0a 100644 --- a/md/UBERON/92/UBERON_0000392.md +++ b/md/UBERON/92/UBERON_0000392.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000392 * *Label* = longissimus muscle - * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longissimus] + * *Definition* = The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longissimus ] ## Synonyms - * longissimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77178] - * musculus longissimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001648] - * musculus longissimus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Longissimus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * longissimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77178 ] + * musculus longissimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001648 ] + * musculus longissimus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Longissimus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * intermediate column of erector spinae ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0000992.md b/md/UBERON/92/UBERON_0000992.md index e8626902c5..88ab2d5a77 100644 --- a/md/UBERON/92/UBERON_0000992.md +++ b/md/UBERON/92/UBERON_0000992.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000992 * *Label* = female gonad - * *Definition* = Ovum-producing female reproductive organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovary] + * *Definition* = Ovum-producing female reproductive organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovary ] * *Comment* = Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP]. ## Synonyms - * female organism genitalia gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism genitalia gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female organism reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female reproductive system gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * female reproductive system gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * genitalia of female organism gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * genitalia of female organism gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of female organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of female organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of genitalia of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonad of reproductive system of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of female organism genitalia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of female organism reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of female reproductive system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of genitalia of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gonada of reproductive system of female organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * female organism genitalia gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism genitalia gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female organism reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female reproductive system gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * female reproductive system gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * genitalia of female organism gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * genitalia of female organism gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of female organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of female organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of genitalia of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonad of reproductive system of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of female organism genitalia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of female organism reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of female reproductive system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of genitalia of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gonada of reproductive system of female organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * ovary - * ovum-producing ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061039[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * reproductive system of female organism gonad [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reproductive system of female organism gonada [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ovaries [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ovarium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ovary[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ovum-producing ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061039, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * reproductive system of female organism gonad [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reproductive system of female organism gonada [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ovaries [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ovarium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ovary, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -54,7 +54,7 @@ * OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA * SCTID:181464007 * TAO:0000403 - * UMLS:C0029939 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovary] + * UMLS:C0029939 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovary ] * VHOG:0000251 * Wikipedia:Ovary * XAO:0000258 @@ -80,7 +80,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gonad](../../UBERON/91/UBERON_0000991.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) ## Other Logical Axioms @@ -93,8 +93,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) while it is likely that Urbilateria lacked a complex somatic reproductive system, it is at present impossible to speculate on whether or not it possessed a true gonad, let alone any other somatic adaptations for reproduction (reference 1); Examination of different vertebrate species shows that the adult gonad is remarkably similar in its morphology across different phylogenetic classes. Surprisingly, however, the cellular and molecular programs employed to create similar organs are not evolutionarily conserved (reference 2).[uncertain][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = ovarian * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001092.md b/md/UBERON/92/UBERON_0001092.md index 096e2b2d58..020427088a 100644 --- a/md/UBERON/92/UBERON_0001092.md +++ b/md/UBERON/92/UBERON_0001092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001092 * *Label* = vertebral bone 1 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlas_(anatomy)] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlas_(anatomy) ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -12,10 +12,10 @@ * atlas * atlas (CI) * atlas vertebra - * cervical atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011576] - * cervical vertebra 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001421[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] + * cervical atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011576 ] + * cervical vertebra 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001421, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] * first cervical vertebra - * vertebra 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001167] + * vertebra 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001167 ] * C1 ## Cross-references @@ -29,7 +29,7 @@ * MESH:A02.835.232.834.151.213 * SCTID:181818007 * TAO:0001167 - * UMLS:C0004170 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C1_Vertebra] + * UMLS:C0004170 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C1_Vertebra ] * Wikipedia:Atlas_(anatomy) * ZFA:0001167b * ncithesaurus:C1_Vertebra @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = First postcranial vertebra, which is modified anteriorly to articulate with the skull.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vertebra that is posteriorly adjacent to the neurocranium.[TAO] * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001192.md b/md/UBERON/92/UBERON_0001192.md index 3b193c0dde..26d521404c 100644 --- a/md/UBERON/92/UBERON_0001192.md +++ b/md/UBERON/92/UBERON_0001192.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001192 * *Label* = left gastric artery - * *Definition* = In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_gastric_artery] + * *Definition* = In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_gastric_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * gastric artery - * arteria gastrica sinistra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Left_gastric_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria gastrica sinistra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Left_gastric_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0001961 * OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA * SCTID:244267000 - * UMLS:C0226299 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Artery] + * UMLS:C0226299 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Artery ] * Wikipedia:Left_gastric_artery * galen:LeftGastricArtery * http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001292.md b/md/UBERON/92/UBERON_0001292.md index aa903c30a9..b5a8119bf4 100644 --- a/md/UBERON/92/UBERON_0001292.md +++ b/md/UBERON/92/UBERON_0001292.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001292 * *Label* = distal convoluted tubule - * *Definition* = a portion of kidney nephron between the loop of Henle and the collecting duct system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_convoluted_tubule] + * *Definition* = a portion of kidney nephron between the loop of Henle and the collecting duct system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_convoluted_tubule ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -11,8 +11,8 @@ * distal convoluted renal tubule * tubulus contortus distalis * second convoluted tubule - * tubulus contortus distalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Distal_convoluted_tubule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tubulus convolutus distalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tubulus contortus distalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Distal_convoluted_tubule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tubulus convolutus distalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:17721 * MA:0001666 * SCTID:361336005 - * UMLS:C0022676 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Distal_Convoluted_Tubule] + * UMLS:C0022676 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Distal_Convoluted_Tubule ] * Wikipedia:Distal_convoluted_tubule * http://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png * http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001392.md b/md/UBERON/92/UBERON_0001392.md index 2a9af89680..88e08aaa54 100644 --- a/md/UBERON/92/UBERON_0001392.md +++ b/md/UBERON/92/UBERON_0001392.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001392 * *Label* = flexor hallucis longus - * *Definition* = The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peroni, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_hallucis_longus_muscle] + * *Definition* = The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peroni, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_hallucis_longus_muscle ] ## Synonyms - * flexor hallucis longus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flexor_hallucis_longus_muscle] + * flexor hallucis longus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flexor_hallucis_longus_muscle ] ## Cross-references * FMA:22593 * MA:0002301 * SCTID:361826009 - * UMLS:C0224473 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Flexor_Hallucis_Longus] + * UMLS:C0224473 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Flexor_Hallucis_Longus ] * Wikipedia:Flexor_hallucis_longus_muscle * http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png * http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001492.md b/md/UBERON/92/UBERON_0001492.md index b8a580fdc0..23c863452c 100644 --- a/md/UBERON/92/UBERON_0001492.md +++ b/md/UBERON/92/UBERON_0001492.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001492 * *Label* = radial nerve - * *Definition* = The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Radial_nerve] + * *Definition* = The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Radial_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nervus radialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Radial_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus radialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Radial_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A08.800.800.720.050.700 * OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA * SCTID:181011002 - * UMLS:C0034518 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Radial_Nerve] + * UMLS:C0034518 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Radial_Nerve ] * VHOG:0000896 * Wikipedia:Radial_nerve * http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png @@ -48,8 +48,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001592.md b/md/UBERON/92/UBERON_0001592.md index 3c923b8913..c1944efe10 100644 --- a/md/UBERON/92/UBERON_0001592.md +++ b/md/UBERON/92/UBERON_0001592.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001592 * *Label* = bronchial vein - * *Definition* = The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bronchial_veins] + * *Definition* = The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bronchial_veins ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:4749 * MA:0002088 * SCTID:198293000 - * UMLS:C0226650 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchial_Vein] + * UMLS:C0226650 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchial_Vein ] * Wikipedia:Bronchial_veins * ncithesaurus:Bronchial_Vein @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001692.md b/md/UBERON/92/UBERON_0001692.md index c989eccbee..ef9afc65c5 100644 --- a/md/UBERON/92/UBERON_0001692.md +++ b/md/UBERON/92/UBERON_0001692.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001692 * *Label* = basioccipital bone - * *Definition* = One of the bones of the occiput, the part of the skull which articulates with the spine. The basioccipital is located (if present) ventral to the foramen magnum. It often rests on or articulates with the basisphenoid, as well as meeting the exoccipitals. The basioccipital usually forms most (sometimes all) of the occipital condyle(s) and the ventral margin of the foramen magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_part_of_occipital_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryB.html] + * *Definition* = One of the bones of the occiput, the part of the skull which articulates with the spine. The basioccipital is located (if present) ventral to the foramen magnum. It often rests on or articulates with the basisphenoid, as well as meeting the exoccipitals. The basioccipital usually forms most (sometimes all) of the occipital condyle(s) and the ventral margin of the foramen magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_part_of_occipital_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryB.html ] * *Comment* = TODO - check FMA ## Synonyms * basi-occipital * basilar part of occipital bone - * basinial@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000472] - * basinioste@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000472] + * basinial@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000472 ] + * basinioste@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000472 ] * basioccipital * basioccipital bone - * basioccipital@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000472] - * pars basilaris ossis occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Basilar_part_of_occipital_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basioccipital@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000472 ] + * pars basilaris ossis occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Basilar_part_of_occipital_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -50,7 +50,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basioccipital endochondral element](../../UBERON/48/UBERON_0015048.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) ## Other Logical Axioms @@ -64,8 +64,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In some teleosts the anterior vertebral centra fuse to the basioccipital forming a monopartite occipital condyle.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001792.md b/md/UBERON/92/UBERON_0001792.md index 9c2fb6410b..f9857c4b4c 100644 --- a/md/UBERON/92/UBERON_0001792.md +++ b/md/UBERON/92/UBERON_0001792.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001792 * *Label* = ganglionic layer of retina - * *Definition* = Cytoarchitectural layer of retina that contains somata of retinal ganglion cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005030] + * *Definition* = Cytoarchitectural layer of retina that contains somata of retinal ganglion cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005030 ] * *Comment* = Check exact synonyms in ZFA / XAO ## Synonyms * GCL layer * RGC layer - * ganglion cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58687[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000024] - * ganglionic cell layer of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58687] + * ganglion cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58687, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000024 ] + * ganglionic cell layer of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58687 ] * retina ganglion cell layer * retina ganglion layer * retinal ganglion cell layer - * retinal ganglion layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008510] - * stratum ganglionicum (retina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58687] - * retina, ganglion cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Rgcl] - * stratum ganglionicum retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ganglion_cell_layer[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * retinal ganglion layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008510 ] + * stratum ganglionicum (retina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58687 ] + * retina, ganglion cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Rgcl ] + * stratum ganglionicum retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ganglion_cell_layer, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -60,8 +60,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain[Wikipedia:Ganglion_cell_layer]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001892.md b/md/UBERON/92/UBERON_0001892.md index a04bcb551e..8b2d22933f 100644 --- a/md/UBERON/92/UBERON_0001892.md +++ b/md/UBERON/92/UBERON_0001892.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001892 * *Label* = rhombomere - * *Definition* = A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Rhombomere[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Rhombomere, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms * rhombomere - * hindbrain segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001064] - * segment of hindbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001064] - * future rhombencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MIAA:0000272] - * rhombomeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000672[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * hindbrain segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001064 ] + * segment of hindbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001064 ] + * future rhombencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MIAA:0000272 ] + * rhombomeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000672, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -40,7 +40,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuromere](../../UBERON/31/UBERON_0004731.md) and [part_of](../../BFO/50/BFO_0000050.md) some [presumptive hindbrain](../../UBERON/77/UBERON_0007277.md) ## Other Logical Axioms @@ -50,8 +50,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A segment of the developing hindbrain. Kimmel et al, 1995.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Rhombomeric segmentation is found in all living vertebrates and is of fundamental importance to the development of the vertebrate head.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0001992.md b/md/UBERON/92/UBERON_0001992.md index 9df9fe17e1..a2d2a01de3 100644 --- a/md/UBERON/92/UBERON_0001992.md +++ b/md/UBERON/92/UBERON_0001992.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001992 * *Label* = papillary layer of dermis - * *Definition* = Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Papillary_dermis] + * *Definition* = Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Papillary_dermis ] * *Comment* = AO notes: check AO ## Synonyms - * corpus papillary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009545] - * dermis papillary layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000800] + * corpus papillary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009545 ] + * dermis papillary layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000800 ] * papillary dermis - * papillary layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009545] - * papillary layer of dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64776] - * stratum papillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009545] - * stratum papillare corii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009545] - * superficial dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000802] - * superficial dermis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009545] - * stratum papillare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Papillary_dermis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * papillary layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009545 ] + * papillary layer of dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64776 ] + * stratum papillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009545 ] + * stratum papillare corii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009545 ] + * superficial dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000802 ] + * superficial dermis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009545 ] + * stratum papillare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Papillary_dermis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:64776 * MA:0000800 * MA:0000802 - * UMLS:C0221930 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Papillare] - * UMLS:C0682598 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Papillary_Dermis] + * UMLS:C0221930 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Papillare ] + * UMLS:C0682598 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Papillary_Dermis ] * Wikipedia:Papillary_dermis * http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG * ncithesaurus:Papillary_Dermis @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002092.md b/md/UBERON/92/UBERON_0002092.md index c9094a77e2..9a166bac3a 100644 --- a/md/UBERON/92/UBERON_0002092.md +++ b/md/UBERON/92/UBERON_0002092.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002092 * *Label* = brain dura mater - * *Definition* = the fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009025] + * *Definition* = the fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009025 ] ## Synonyms - * cranial dura mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71236] + * cranial dura mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71236 ] * dura mater encephali * dura mater of brain @@ -20,7 +20,7 @@ * FMA:71236 * MA:0000815 * SCTID:309321003 - * UMLS:C0459393 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerebral_Dura_Mater] + * UMLS:C0459393 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerebral_Dura_Mater ] * VHOG:0000270 * ncithesaurus:Cerebral_Dura_Mater @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outermost and densest membrane of the three mammalian meninges covering the brain and spinal cord. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002192.md b/md/UBERON/92/UBERON_0002192.md index 191dec7099..a84f048eb8 100644 --- a/md/UBERON/92/UBERON_0002192.md +++ b/md/UBERON/92/UBERON_0002192.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002192 * *Label* = ventricular system choroidal fissure - * *Definition* = The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001075] + * *Definition* = The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001075 ] * *Comment* = Usage notes: not to be confused with optic fissure. the choroidal fissure is a subarachnoid space (via subarachnoid fissure in FMA). AO notes: Most ontologies appear to have switched to using less confusing primary terms for optic and choroidal fissues. Still need to check FMA - two possible terms? CARO notes: is this a groove or a space or a line? Structure notes: relate to lateral ventricle? ## Synonyms - * choroidal fissure of lateral ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83715] - * lateral ventricle choroid fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000250] - * ventricular system choroid fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001756] - * chorioid fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74512] - * chorioidal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74512] - * choroid fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74512[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001075[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * choroid invagination [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000250] - * choroidal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74512] + * choroidal fissure of lateral ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83715 ] + * lateral ventricle choroid fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000250 ] + * ventricular system choroid fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001756 ] + * chorioid fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74512 ] + * chorioidal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74512 ] + * choroid fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74512, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001075, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * choroid invagination [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000250 ] + * choroidal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74512 ] ## Cross-references @@ -29,7 +29,7 @@ * FMA:83715 * NeuroNames:24 * TAO:0001075 - * UMLS:C0262212 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Choroidal_Fissure] + * UMLS:C0262212 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Choroidal_Fissure ] * VHOG:0001756 * ZFA:0001075 * ncithesaurus:Choroidal_Fissure @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002292.md b/md/UBERON/92/UBERON_0002292.md index 792dc78fb0..f27a057f3c 100644 --- a/md/UBERON/92/UBERON_0002292.md +++ b/md/UBERON/92/UBERON_0002292.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002292 * *Label* = costovertebral joint - * *Definition* = The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costovertebral_joint] + * *Definition* = The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costovertebral_joint ] * *Comment* = AO notes: FMA has both this and joint of head of rib ## Synonyms - * costovertebral synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10382] - * costal head joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7951] - * costocorporeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7951] - * joint of costal head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7951] - * joint of head of rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7951] + * costovertebral synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10382 ] + * costal head joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7951 ] + * costocorporeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7951 ] + * joint of costal head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7951 ] + * joint of head of rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7951 ] ## Cross-references @@ -21,7 +21,7 @@ * FMA:10382 * MA:0001510 * SCTID:263315000 - * UMLS:C0224681 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Costovertebral_Joint] + * UMLS:C0224681 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Costovertebral_Joint ] * Wikipedia:Costovertebral_joint * http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png * ncithesaurus:Costovertebral_Joint @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [head of rib](../../UBERON/30/UBERON_0002230.md) and [connects](../../ts/core#connects.md) some [thoracic vertebra](../../UBERON/47/UBERON_0002347.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002392.md b/md/UBERON/92/UBERON_0002392.md index 085f8d8466..8da40273d4 100644 --- a/md/UBERON/92/UBERON_0002392.md +++ b/md/UBERON/92/UBERON_0002392.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002392 * *Label* = nasolacrimal duct - * *Definition* = The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasolacrimal_duct] + * *Definition* = The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasolacrimal_duct ] * *Comment* = todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal ## Synonyms - * nasolacrimal duct - posterior naris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000664] - * d. nasolacrimalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nasolacrimal_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nasolacrimal duct - posterior naris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000664 ] + * d. nasolacrimalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nasolacrimal_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A09.371.463.640 * OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA * SCTID:280643009 - * UMLS:C0027437 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Nasolacrimal_Duct] + * UMLS:C0027437 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Nasolacrimal_Duct ] * VHOG:0000664 * Wikipedia:Nasolacrimal_duct * http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The nasolacrimal duct is probably homologous to the posterior (excurrent) naris of actinopterygian fishes.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002492.md b/md/UBERON/92/UBERON_0002492.md index 80f68d9668..c5a9642608 100644 --- a/md/UBERON/92/UBERON_0002492.md +++ b/md/UBERON/92/UBERON_0002492.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002492 * *Label* = sagittal suture - * *Definition* = The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sagittal_suture] + * *Definition* = The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sagittal_suture ] ## Synonyms * sagittal suture of skull - * sutura sagittalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sagittal_suture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sutura sagittalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sagittal_suture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [cranial suture](../../UBERON/85/UBERON_0003685.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002592.md b/md/UBERON/92/UBERON_0002592.md index ccd5068899..683d5e65e5 100644 --- a/md/UBERON/92/UBERON_0002592.md +++ b/md/UBERON/92/UBERON_0002592.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002592 * *Label* = juxtarestiform body - * *Definition* = The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Juxtarestiform_body] + * *Definition* = The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Juxtarestiform_body ] ## Synonyms - * corpus juxtarestiforme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:779[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * corpus juxtarestiforme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:779, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -15,9 +15,9 @@ * BAMS:jx * FMA:72613 * NIF_GrossAnatomy:birnlex_1101 - * NeuroNames:779 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1101] + * NeuroNames:779 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1101 ] * SCTID:110687007 - * UMLS:C0152394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1101] + * UMLS:C0152394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1101 ] * Wikipedia:Juxtarestiform_body * http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002692.md b/md/UBERON/92/UBERON_0002692.md index d7e4b6f61b..1c8bc48a69 100644 --- a/md/UBERON/92/UBERON_0002692.md +++ b/md/UBERON/92/UBERON_0002692.md @@ -6,20 +6,20 @@ ## Synonyms - * raphe medullae oblongatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68874[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe nuclei of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68874] - * raphe of medulla oblongata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68874] - * nuclei raphe (myelencephali) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:738[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * raphe nuclei of the medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:738] + * raphe medullae oblongatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68874, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe nuclei of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68874 ] + * raphe of medulla oblongata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68874 ] + * nuclei raphe (myelencephali) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:738, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * raphe nuclei of the medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:738 ] ## Cross-references * BAMS:RaM * FMA:68874 * NIF_GrossAnatomy:birnlex_1420 - * NeuroNames:738 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1420] + * NeuroNames:738 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1420 ] * SCTID:362420006 - * UMLS:C0175514 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1420] + * UMLS:C0175514 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1420 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002792.md b/md/UBERON/92/UBERON_0002792.md index faa8e4307d..c36b51ccdb 100644 --- a/md/UBERON/92/UBERON_0002792.md +++ b/md/UBERON/92/UBERON_0002792.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002792 * *Label* = lumbar spinal cord - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lumbar_spinal_cord] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lumbar_spinal_cord ] ## Synonyms - * lumbar segment of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71168] - * lumbar segments of spinal cord [1-5] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71168] - * lumbar spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71168] - * segmenta lumbalia medullae spinalis [1-5] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71168[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lumbar segment of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71168 ] + * lumbar segments of spinal cord [1-5] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71168 ] + * lumbar spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71168 ] + * segmenta lumbalia medullae spinalis [1-5] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71168, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,9 +18,9 @@ * NIF_GrossAnatomy:birnlex_1704 * NeuroNames:1677 * SCTID:180962006 - * UMLS:C0581620 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1704] - * UMLS:C0581621 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lumbar_Spinal_Cord] - * UMLS:C1278838 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1704] + * UMLS:C0581620 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1704 ] + * UMLS:C0581621 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lumbar_Spinal_Cord ] + * UMLS:C1278838 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1704 ] * Wikipedia:Lumbar_spinal_cord * ncithesaurus:Lumbar_Spinal_Cord @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower back](../../UBERON/62/UBERON_0005462.md) and [spinal cord segment](../../UBERON/44/UBERON_0005844.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002892.md b/md/UBERON/92/UBERON_0002892.md index 3115acac24..169eb92d0c 100644 --- a/md/UBERON/92/UBERON_0002892.md +++ b/md/UBERON/92/UBERON_0002892.md @@ -6,16 +6,16 @@ ## Synonyms - * medial amygalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2701] - * medial nucleus of amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74046] - * corticomedial amygdaloid area medial amygdaloid nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MeA] - * medial amygdalar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241] - * medial amygdaloid nucleus anterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MeA] - * medial amygdaloid nucleus principal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MeA] - * medial nucleus of the amygdala [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MEA] - * nucleus amygdalae medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002702] - * nucleus amygdaloideus medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus medialis amygdalae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:241[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * medial amygalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2701 ] + * medial nucleus of amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74046 ] + * corticomedial amygdaloid area medial amygdaloid nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MeA ] + * medial amygdalar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241 ] + * medial amygdaloid nucleus anterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MeA ] + * medial amygdaloid nucleus principal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MeA ] + * medial nucleus of the amygdala [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MEA ] + * nucleus amygdalae medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002702 ] + * nucleus amygdaloideus medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus medialis amygdalae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:241, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,8 +29,8 @@ * FMA:74046 * MA:0002927 * NIF_GrossAnatomy:birnlex_2701 - * NeuroNames:241 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2701] - * UMLS:C0175217 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2701] + * NeuroNames:241 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2701 ] + * UMLS:C0175217 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2701 ] ## Subsets @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0002992.md b/md/UBERON/92/UBERON_0002992.md index 907280c2f7..efaf66b784 100644 --- a/md/UBERON/92/UBERON_0002992.md +++ b/md/UBERON/92/UBERON_0002992.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002992 * *Label* = paratenial nucleus - * *Definition* = One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002457] + * *Definition* = One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002457 ] ## Synonyms - * nucleus parataenialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002457] - * nucleus parataenialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62151[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * parataenial nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62151] - * paratenial thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62151] - * PT [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_860[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * nuclei parataeniales thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:307[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus parataenialis (Hassler) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:307[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus parataenialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002457] - * nucleus paratenialis thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:307[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * paratenial nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002457] - * paratenial nucleus of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:307] - * paratrigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PAT] + * nucleus parataenialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002457 ] + * nucleus parataenialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62151, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * parataenial nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62151 ] + * paratenial thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62151 ] + * PT [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_860, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * nuclei parataeniales thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:307, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus parataenialis (Hassler) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:307, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus parataenialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002457 ] + * nucleus paratenialis thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:307, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * paratenial nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002457 ] + * paratenial nucleus of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:307 ] + * paratrigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PAT ] ## Cross-references @@ -28,9 +28,9 @@ * BTO:0002457 * FMA:62151 * NIF_GrossAnatomy:birnlex_860 - * NeuroNames:307 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_860] + * NeuroNames:307 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_860 ] * SCTID:422800004 - * UMLS:C0175252 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_860] + * UMLS:C0175252 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_860 ] ## Subsets @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003092.md b/md/UBERON/92/UBERON_0003092.md index 6c87629a88..53dd04ba2d 100644 --- a/md/UBERON/92/UBERON_0003092.md +++ b/md/UBERON/92/UBERON_0003092.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003092 * *Label* = ultimobranchial body - * *Definition* = Pharyngeal pouch derivative, usually paired cell masses located in the neck region[Kardong]. The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]. The ultimobranchial bodies of lower vertebrates contain large amounts of calcitonin. In mammals the bodies fuse with the thyroid gland and are thought to develop into the parafollicular cells. (Stedman, 25th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.939[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimopharyngeal_body] + * *Definition* = Pharyngeal pouch derivative, usually paired cell masses located in the neck region[Kardong]. The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]. The ultimobranchial bodies of lower vertebrates contain large amounts of calcitonin. In mammals the bodies fuse with the thyroid gland and are thought to develop into the parafollicular cells. (Stedman, 25th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.939, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimopharyngeal_body ] * *Comment* = Developmental origins vary across species. PMID:16313389 says: the most posterior pouch generates the ultimobranchial bodies in most vertebrate classes, but mammals do not contain this structure // The neural crest is the source of ultimobranchial cells[Kardong]. WP says pouch 4, but this isn't supported by Kardong (table 13.1 or fig 15.5). EHDAA2 says 6th arch mesenchyme ## Synonyms - * corpus ultimopharyngeum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * ultimobranchial gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * ultimopharyngeal body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * ultimopharyngeal gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * postbranchial body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * ultimobranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body] - * ultimobranchial bodies [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ultimobranchial_body[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * corpus ultimopharyngeum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * ultimobranchial gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * ultimopharyngeal body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * ultimopharyngeal gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * postbranchial body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * ultimobranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body ] + * ultimobranchial bodies [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ultimobranchial_body, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -59,8 +59,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The glandular tissue originating from the fifth branchial pouch which combines with the buccal cavity outgrowth to form the thyroid and contributes calcitonin-secreting cells to the gland. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) ultimobranchial bodies that develop in all vertebrates from the ventral or posterior surface of the last pair of pharyngeal pouches. The ultimobranchial bodies are vestigial in most mammals (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003192.md b/md/UBERON/92/UBERON_0003192.md index 6726236d93..91369e8c4f 100644 --- a/md/UBERON/92/UBERON_0003192.md +++ b/md/UBERON/92/UBERON_0003192.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004737 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000159 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003192 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_0003292.md b/md/UBERON/92/UBERON_0003292.md index b3e69f3dfe..a52a0fd433 100644 --- a/md/UBERON/92/UBERON_0003292.md +++ b/md/UBERON/92/UBERON_0003292.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003292 * *Label* = meninx of spinal cord - * *Definition* = A meninx that is part of a spinal cord [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A meninx that is part of a spinal cord [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * menines of spinal cord [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * meninges of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord meninges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal cord meninx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinal meninges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * menines of spinal cord [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * meninges of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord meninges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal cord meninx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinal meninges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * spinal meninx ## Cross-references @@ -22,7 +22,7 @@ * EMAPA:17804 * MA:0001130 * SCTID:181097002 - * UMLS:C0037938 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Meninges] + * UMLS:C0037938 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Meninges ] * VHOG:0000443 * ncithesaurus:Spinal_Meninges @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [meninx](../../UBERON/60/UBERON_0002360.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Meninges that are part of the spinal cord. [Bgee_curator][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003492.md b/md/UBERON/92/UBERON_0003492.md index 8252125365..a8a684b07a 100644 --- a/md/UBERON/92/UBERON_0003492.md +++ b/md/UBERON/92/UBERON_0003492.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003492 * *Label* = bronchus reticular lamina - * *Definition* = A reticular lamina that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A reticular lamina that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchi fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) and [reticular lamina of epithelium](../../UBERON/67/UBERON_0001967.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003592.md b/md/UBERON/92/UBERON_0003592.md index 1c35045aa2..311219fa90 100644 --- a/md/UBERON/92/UBERON_0003592.md +++ b/md/UBERON/92/UBERON_0003592.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003592 * *Label* = bronchus connective tissue - * *Definition* = A portion of connective tissue that is part of a bronchus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a bronchus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * bronchi connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchi textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchial trunk textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * bronchus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of bronchial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * bronchi connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchi textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchial trunk textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * bronchus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of bronchial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001831 - * UMLS:C1707052 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bronchus_Connective_Tissue] + * UMLS:C1707052 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bronchus_Connective_Tissue ] * ncithesaurus:Bronchus_Connective_Tissue ## Subsets @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [bronchus](../../UBERON/85/UBERON_0002185.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003692.md b/md/UBERON/92/UBERON_0003692.md index 00649d59ea..02e3cfca0a 100644 --- a/md/UBERON/92/UBERON_0003692.md +++ b/md/UBERON/92/UBERON_0003692.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003692 * *Label* = acromioclavicular joint - * *Definition* = The gliding joint formed by the outer extremity of the clavicle and the inner margin of the acromion process of the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A02.835.583.032[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromioclavicular_joint] + * *Definition* = The gliding joint formed by the outer extremity of the clavicle and the inner margin of the acromion process of the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A02.835.583.032, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromioclavicular_joint ] ## Synonyms - * acromioclavicular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromioclavicular_joint] - * articulatio acromioclavicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromioclavicular_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * scapuloclavicular articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromioclavicular_joint] + * acromioclavicular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromioclavicular_joint ] + * articulatio acromioclavicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromioclavicular_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * scapuloclavicular articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromioclavicular_joint ] ## Cross-references @@ -18,7 +18,7 @@ * MESH:A02.835.583.032 * OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA * SCTID:182166001 - * UMLS:C0001208 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Acromioclavicular_Joint] + * UMLS:C0001208 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Acromioclavicular_Joint ] * Wikipedia:Acromioclavicular_joint * http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [clavicle](../../UBERON/05/UBERON_0001105.md) and [connects](../../ts/core#connects.md) some [scapula](../../UBERON/49/UBERON_0006849.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0003992.md b/md/UBERON/92/UBERON_0003992.md index 08b043a65f..832d3eabc3 100644 --- a/md/UBERON/92/UBERON_0003992.md +++ b/md/UBERON/92/UBERON_0003992.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003992 * *Label* = fourth ventricle lateral aperture - * *Definition* = One of the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009803[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_aperture] + * *Definition* = One of the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009803, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_aperture ] ## Synonyms - * apertura lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen of Key-Retzius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473] - * foramen of Luschka [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473] - * foramen of Retzius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473] - * foramen of key and retzius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473] - * lateral aperture of fourth ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78473] - * lateral aperture [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009803] - * apertura lateralis ventriculi quarti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_aperture[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * forament of Luschka [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002946] + * apertura lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen of Key-Retzius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473 ] + * foramen of Luschka [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473 ] + * foramen of Retzius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473 ] + * foramen of key and retzius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473 ] + * lateral aperture of fourth ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78473 ] + * lateral aperture [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009803 ] + * apertura lateralis ventriculi quarti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_aperture, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * forament of Luschka [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002946 ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0002946 * NeuroNames:640 * SCTID:63426007 - * UMLS:C0152287 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_of_Luschka] + * UMLS:C0152287 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_of_Luschka ] * Wikipedia:Lateral_aperture * http://upload.wikimedia.org/wikipedia/commons/5/54/Lateral_ventricle.gif * ncithesaurus:Foramen_of_Luschka @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004092.md b/md/UBERON/92/UBERON_0004092.md index b6391f29a4..8731414597 100644 --- a/md/UBERON/92/UBERON_0004092.md +++ b/md/UBERON/92/UBERON_0004092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004092 * *Label* = hypothalamus-pituitary axis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000864] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000864 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004292.md b/md/UBERON/92/UBERON_0004292.md index 25560df953..7c254d5791 100644 --- a/md/UBERON/92/UBERON_0004292.md +++ b/md/UBERON/92/UBERON_0004292.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004292 * *Label* = cardiac skeleton - * *Definition* = a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart[GO]. structure of dense connective tissue in the heart that separates the atria from the ventricles. It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton] + * *Definition* = a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart[GO]. structure of dense connective tissue in the heart that separates the atria from the ventricles. It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton ] ## Synonyms * cardiac fibrous skeleton * fibrous skeleton of heart * heart fibrous skeleton - * skeleton of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9496] - * anulus fibrosus dexter cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * anulus fibrosus sinister cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigona fibrosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigonum fibrosum dextrum cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * trigonum fibrosum sinistrum cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_skeleton[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * skeleton of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9496 ] + * anulus fibrosus dexter cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * anulus fibrosus sinister cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigona fibrosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigonum fibrosum dextrum cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * trigonum fibrosum sinistrum cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_skeleton, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004392.md b/md/UBERON/92/UBERON_0004392.md index 5fb2ffdd20..93c248f4e5 100644 --- a/md/UBERON/92/UBERON_0004392.md +++ b/md/UBERON/92/UBERON_0004392.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004392 * *Label* = epiphysis of second metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone of digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpal 2 epiphysis - * second metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33794] + * second metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33794 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 2](../../UBERON/46/UBERON_0003646.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004492.md b/md/UBERON/92/UBERON_0004492.md index 2a8f5430b0..b965e0db54 100644 --- a/md/UBERON/92/UBERON_0004492.md +++ b/md/UBERON/92/UBERON_0004492.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004492 * *Label* = cardiac muscle tissue of cardiac septum - * *Definition* = A portion of cardiac muscle tissue that is part of a cardiac septum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a cardiac septum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac septum](../../UBERON/99/UBERON_0002099.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004692.md b/md/UBERON/92/UBERON_0004692.md index 4c814d10b6..60640627bd 100644 --- a/md/UBERON/92/UBERON_0004692.md +++ b/md/UBERON/92/UBERON_0004692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004692 * *Label* = external naris epithelium - * *Definition* = An epithelium that is part of a naris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a naris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [external naris](../../UBERON/28/UBERON_0005928.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004792.md b/md/UBERON/92/UBERON_0004792.md index e624b5b5e6..5eead934d5 100644 --- a/md/UBERON/92/UBERON_0004792.md +++ b/md/UBERON/92/UBERON_0004792.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004792 * *Label* = secretion of endocrine pancreas - * *Definition* = A secretion that is part of a endocrine pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A secretion that is part of a endocrine pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * endocrine pancreas secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pancreatic endocrine secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pancreatic_Endocrine_Secretion] - * pars endocrina pancreatis secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of pars endocrina pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * endocrine pancreas secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pancreatic endocrine secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pancreatic_Endocrine_Secretion ] + * pars endocrina pancreatis secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of pars endocrina pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002517 - * UMLS:C1518866 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Endocrine_Secretion] + * UMLS:C1518866 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Endocrine_Secretion ] * ncithesaurus:Pancreatic_Endocrine_Secretion ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [part_of](../../BFO/50/BFO_0000050.md) some [endocrine pancreas](../../UBERON/16/UBERON_0000016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004892.md b/md/UBERON/92/UBERON_0004892.md index ada2a66751..8ddf133445 100644 --- a/md/UBERON/92/UBERON_0004892.md +++ b/md/UBERON/92/UBERON_0004892.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004892 * *Label* = lobar bronchus alveolar system - * *Definition* = The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012622] + * *Definition* = The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012622 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0004992.md b/md/UBERON/92/UBERON_0004992.md index 32f2be3cfd..67fb86c9b8 100644 --- a/md/UBERON/92/UBERON_0004992.md +++ b/md/UBERON/92/UBERON_0004992.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004992 * *Label* = mucosa of descending colon - * *Definition* = A mucosa that is part of a descending colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a descending colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * descending colon mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * descending colon mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * descending colon mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * descending colon organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of descending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of descending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of descending colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * descending colon mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * descending colon mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * descending colon mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * descending colon organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of descending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of descending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of descending colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [descending colon](../../UBERON/58/UBERON_0001158.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005092.md b/md/UBERON/92/UBERON_0005092.md index 31213efc1c..9d72c8bcbd 100644 --- a/md/UBERON/92/UBERON_0005092.md +++ b/md/UBERON/92/UBERON_0005092.md @@ -6,7 +6,7 @@ ## Synonyms - * sinus venosus right horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000489] + * sinus venosus right horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000489 ] ## Cross-references @@ -35,8 +35,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Three major adaptations, or 'novel cardiac components', that were not present in the ancestor chordate heart tube can be distinguished in the lower vertebrate heart: the atrium, ventricle, and possibly the muscular sinus venosus.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005192.md b/md/UBERON/92/UBERON_0005192.md index 6aba8bb058..d2af0033d9 100644 --- a/md/UBERON/92/UBERON_0005192.md +++ b/md/UBERON/92/UBERON_0005192.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005192 * *Label* = deferent duct artery - * *Definition* = an artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Artery_to_the_ductus_deferens] + * *Definition* = an artery in males that provides blood to the vas deferens. The artery usually arises from the anterior trunk of the superior vesical artery. It accompanies the vas deferens into the testis, where it anastomoses with the testicular artery. In this way it also supplies blood to the testis and epididymis. A small branch supplies the ureter[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Artery_to_the_ductus_deferens ] ## Synonyms - * arteria ductus deferentis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Artery_to_the_ductus_deferens[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * artery of ductus deferens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18930] - * ductus deferens artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18930] + * arteria ductus deferentis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Artery_to_the_ductus_deferens, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * artery of ductus deferens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18930 ] + * ductus deferens artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18930 ] * vas deferens artery ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005292.md b/md/UBERON/92/UBERON_0005292.md index ee41592b85..98da011586 100644 --- a/md/UBERON/92/UBERON_0005292.md +++ b/md/UBERON/92/UBERON_0005292.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005292 * *Label* = extraembryonic tissue - * *Definition* = Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [embryonic structure](../../UBERON/50/UBERON_0002050.md) and [existence_starts_and_ends_during](../../core#existence/ng/core#existence_starts_and_ends_during.md) some [embryo stage](../../UBERON/68/UBERON_0000068.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005392.md b/md/UBERON/92/UBERON_0005392.md index ddcc561c04..9a50e4addf 100644 --- a/md/UBERON/92/UBERON_0005392.md +++ b/md/UBERON/92/UBERON_0005392.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005392 * *Label* = cortical layer III - * *Definition* = Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] + * *Definition* = Layer of neocortex lying deep to the external granule cell layer defined cytoarchitecturally by numerous small pyramidal neurons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] ## Synonyms - * cerebral cortex, layer 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX3] - * external pyramidal cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77810] - * external pyramidal cell layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * external pyramidal layer of isocortex [layer iii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77810] - * external pyramidal layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77810] - * lamina pyramidalis externa isocorticis [lamina iii] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77810[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer 3 of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * layer III of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * neocortex external pyramidal cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * neocortex layer 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * neocortex layer III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090809] - * external pyramidal layer of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:External_Pyramidal_Cell_Layer] + * cerebral cortex, layer 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX3 ] + * external pyramidal cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77810 ] + * external pyramidal cell layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * external pyramidal layer of isocortex [layer iii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77810 ] + * external pyramidal layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77810 ] + * lamina pyramidalis externa isocorticis [lamina iii] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77810, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer 3 of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * layer III of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * neocortex external pyramidal cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * neocortex layer 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * neocortex layer III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090809 ] + * external pyramidal layer of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:External_Pyramidal_Cell_Layer ] * pyramidal layer ## Cross-references @@ -27,7 +27,7 @@ * FMA:77810 * MA:0000899 * NIF_GrossAnatomy:nlx_anat_090809 - * UMLS:C1517046 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:External_Pyramidal_Cell_Layer] + * UMLS:C1517046 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:External_Pyramidal_Cell_Layer ] * ncithesaurus:External_Pyramidal_Cell_Layer ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005492.md b/md/UBERON/92/UBERON_0005492.md index 5858be6ad6..c2c9fdef77 100644 --- a/md/UBERON/92/UBERON_0005492.md +++ b/md/UBERON/92/UBERON_0005492.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005492 * *Label* = hyaloid vessel - * *Definition* = blood vessel of transient vascular system of the eye during development, that normally nourishes the retina, immature lens and primary vitreous of the developing eye. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001289] + * *Definition* = blood vessel of transient vascular system of the eye during development, that normally nourishes the retina, immature lens and primary vitreous of the developing eye. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001289 ] * *Comment* = note we are currently conflating vessel and vasculature - we may wish to split this class - see also vascular plexus term ## Synonyms - * hyaloid vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005046[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * hyaloid capillary system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001289] - * hyaloid vascular system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0001289] - * hyaloid vasculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005046] + * hyaloid vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005046, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * hyaloid capillary system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001289 ] + * hyaloid vascular system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0001289 ] + * hyaloid vasculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005046 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005692.md b/md/UBERON/92/UBERON_0005692.md index 1d375bbe65..ee7959eba7 100644 --- a/md/UBERON/92/UBERON_0005692.md +++ b/md/UBERON/92/UBERON_0005692.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005692 * *Label* = manual digit 2 mesenchyme - * *Definition* = Mesenchyme that is part of a manual digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a manual digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 2](../../UBERON/22/UBERON_0003622.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005792.md b/md/UBERON/92/UBERON_0005792.md index d84cbe8864..c7c8d79a94 100644 --- a/md/UBERON/92/UBERON_0005792.md +++ b/md/UBERON/92/UBERON_0005792.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005792 * *Label* = nephric ridge - * *Definition* = Nephric tubules (nephrons) form embryonically along the nephric ridge. The ridge comprises three regions; anterior, middle and posterior. The functional kidney uses nephrons from only one or two regions of the ridge. A pronephric kidney uses only the nephrons from the anterior region of the ridge. A mesonephric kidney uses only the middle region, a metanephric kidney uses only the posterior region and an opisthonephric kidney uses the middle and posterior regions. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter27/custom2/deluxe-content.html] + * *Definition* = Nephric tubules (nephrons) form embryonically along the nephric ridge. The ridge comprises three regions; anterior, middle and posterior. The functional kidney uses nephrons from only one or two regions of the ridge. A pronephric kidney uses only the nephrons from the anterior region of the ridge. A mesonephric kidney uses only the middle region, a metanephric kidney uses only the posterior region and an opisthonephric kidney uses the middle and posterior regions. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter27/custom2/deluxe-content.html ] * *Comment* = TODO - check ridge vs cord vs nephrogenic cord vs blastema ## Synonyms - * nephric cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001240] + * nephric cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001240 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005892.md b/md/UBERON/92/UBERON_0005892.md index 7b3b33c737..6056ef3198 100644 --- a/md/UBERON/92/UBERON_0005892.md +++ b/md/UBERON/92/UBERON_0005892.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005892 * *Label* = mesonephric early distal tubule - * *Definition* = The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XB:curator] + * *Definition* = The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XB:curator ] ## Synonyms - * mesonephric ascending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000333] - * mesonephric straight distal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000333] + * mesonephric ascending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000333 ] + * mesonephric straight distal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000333 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0005992.md b/md/UBERON/92/UBERON_0005992.md index 82819eb065..50620842a6 100644 --- a/md/UBERON/92/UBERON_0005992.md +++ b/md/UBERON/92/UBERON_0005992.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005992 * *Label* = pulmonary valve cusp - * *Definition* = the three fibrous triangular components and associated flap of the pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010602] + * *Definition* = the three fibrous triangular components and associated flap of the pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010602 ] ## Synonyms - * cusp of pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7248] - * pulmonary semilunar valvule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7248] - * pulmonary valvular cusp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7248] - * semilunar cusp of pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7248] - * semilunar valvule of pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7248] + * cusp of pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7248 ] + * pulmonary semilunar valvule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7248 ] + * pulmonary valvular cusp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7248 ] + * semilunar cusp of pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7248 ] + * semilunar valvule of pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7248 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cusp of cardiac valve](../../UBERON/09/UBERON_0006009.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary valve](../../UBERON/46/UBERON_0002146.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006092.md b/md/UBERON/92/UBERON_0006092.md index c38f7d643f..1b350d46d5 100644 --- a/md/UBERON/92/UBERON_0006092.md +++ b/md/UBERON/92/UBERON_0006092.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006092 * *Label* = cuneus cortex - * *Definition* = Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] + * *Definition* = Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] ## Synonyms - * cuneate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61903] - * cuneate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] - * cuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] - * cuneus cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] - * cuneus gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61903] - * cuneus gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] - * cuneus of hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61903] - * cuneus of hemisphere [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1396] - * gyrus cuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:157[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cuneate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61903 ] + * cuneate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] + * cuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] + * cuneus cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] + * cuneus gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61903 ] + * cuneus gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] + * cuneus of hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61903 ] + * cuneus of hemisphere [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1396 ] + * gyrus cuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:157, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:Cun * FMA:61903 * NIF_GrossAnatomy:birnlex_1396 - * NeuroNames:157 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1396] + * NeuroNames:157 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1396 ] * SCTID:279199007 - * UMLS:C0152307 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1396] + * UMLS:C0152307 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1396 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006192.md b/md/UBERON/92/UBERON_0006192.md index da468c9989..39b5f031e2 100644 --- a/md/UBERON/92/UBERON_0006192.md +++ b/md/UBERON/92/UBERON_0006192.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006192 * *Label* = mesonephric proximal tubule - * *Definition* = The mesonephric proximal tubule extends from the capsule to the distal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061275] + * *Definition* = The mesonephric proximal tubule extends from the capsule to the distal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061275 ] * *Comment* = note that ZFA has terms for developing tubule ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [proximal tubule](../../UBERON/34/UBERON_0004134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006292.md b/md/UBERON/92/UBERON_0006292.md index c500e6a9c7..790ced8d5f 100644 --- a/md/UBERON/92/UBERON_0006292.md +++ b/md/UBERON/92/UBERON_0006292.md @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006492.md b/md/UBERON/92/UBERON_0006492.md index f4798c041b..47be00ce2b 100644 --- a/md/UBERON/92/UBERON_0006492.md +++ b/md/UBERON/92/UBERON_0006492.md @@ -6,16 +6,16 @@ ## Synonyms - * C6 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71184] - * C6 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_766] - * sixth cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_766] + * C6 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71184 ] + * C6 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_766 ] + * sixth cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_766 ] ## Cross-references * FMA:71184 * NIF_GrossAnatomy:birnlex_766 * SCTID:278759005 - * UMLS:C0457856 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_766] + * UMLS:C0457856 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_766 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006592.md b/md/UBERON/92/UBERON_0006592.md index 8aa7d59df7..67abe1a2fd 100644 --- a/md/UBERON/92/UBERON_0006592.md +++ b/md/UBERON/92/UBERON_0006592.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006592 * *Label* = transformed vein - * *Definition* = A vestigial embryonic structure that develops_from a vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vestigial embryonic structure that develops_from a vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [immediate_transformation_of](../../SIO/58/SIO_000658.md) some [vein](../../UBERON/38/UBERON_0001638.md) and [vestigial embryonic structure](../../UBERON/90/UBERON_0006590.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006692.md b/md/UBERON/92/UBERON_0006692.md index 1fdba1d991..2182f2a4f1 100644 --- a/md/UBERON/92/UBERON_0006692.md +++ b/md/UBERON/92/UBERON_0006692.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006692 * *Label* = vertebral canal - * *Definition* = The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_canal] + * *Definition* = The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_canal ] * *Comment* = todo - check neural vs vertebral canal; embryonic vs adult? ## Synonyms - * c. vertebralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_canal[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * foramen vertebrale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000693] - * neural canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000693] - * spinal canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000693] - * spinal cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_canal] - * vertebral canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spinal_canal] + * c. vertebralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_canal, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * foramen vertebrale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000693 ] + * neural canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000693 ] + * spinal canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000693 ] + * spinal cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_canal ] + * vertebral canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spinal_canal ] ## Cross-references @@ -60,8 +60,8 @@ * FMA:9680 * GAID:242 * SCTID:361746009 - * UMLS:C0037922 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vertebral_Canal] - * UMLS:C1522467 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Neural_Canal] + * UMLS:C0037922 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vertebral_Canal ] + * UMLS:C1522467 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Neural_Canal ] * Wikipedia:Spinal_canal * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png * ncithesaurus:Neural_Canal @@ -86,8 +86,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Canal formed by the vertebral centra ventrally, the pedicels laterally, and the neural arches dorsally that encloses and protects the spinal cord.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0006792.md b/md/UBERON/92/UBERON_0006792.md index cb31c90d92..1760a4ccd3 100644 --- a/md/UBERON/92/UBERON_0006792.md +++ b/md/UBERON/92/UBERON_0006792.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006792 * *Label* = intermediate layer of superior colliculus - * *Definition* = A layer of superior colliculus that adjacent_to a superficial layer of superior colliculus and adjacent_to a deep layer of superior colliculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A layer of superior colliculus that adjacent_to a superficial layer of superior colliculus and adjacent_to a deep layer of superior colliculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * central zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000327] - * superior colliculus, intermediate layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCI] + * central zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000327 ] + * superior colliculus, intermediate layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCI ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [deep layer of superior colliculus](../../UBERON/93/UBERON_0006793.md) and [adjacent to](../../RO/20/RO_0002220.md) some [superficial layer of superior colliculus](../../UBERON/91/UBERON_0006791.md) and [layer of superior colliculus](../../UBERON/83/UBERON_0006783.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0007192.md b/md/UBERON/92/UBERON_0007192.md index 7000e6494b..e71c879cbe 100644 --- a/md/UBERON/92/UBERON_0007192.md +++ b/md/UBERON/92/UBERON_0007192.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0007292.md b/md/UBERON/92/UBERON_0007292.md index ddc030769c..396293d19b 100644 --- a/md/UBERON/92/UBERON_0007292.md +++ b/md/UBERON/92/UBERON_0007292.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007292 * *Label* = presumptive rhombomere 5 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 5](../../UBERON/15/UBERON_0005515.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0007592.md b/md/UBERON/92/UBERON_0007592.md index da5e12a097..fb035b69a1 100644 --- a/md/UBERON/92/UBERON_0007592.md +++ b/md/UBERON/92/UBERON_0007592.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007592 * *Label* = ciliated columnar epithelium - * *Definition* = Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:64798] + * *Definition* = Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:64798 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [ciliated epithelial cell](../../CL/67/CL_0000067.md) and [simple columnar epithelium](../../UBERON/85/UBERON_0000485.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0007692.md b/md/UBERON/92/UBERON_0007692.md index 9fc9ddad72..aa3fa50f5d 100644 --- a/md/UBERON/92/UBERON_0007692.md +++ b/md/UBERON/92/UBERON_0007692.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007692 * *Label* = nucleus of thalamus - * *Definition* = A nucleus of brain that is part of a thalamus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nucleus of brain that is part of a thalamus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - consider splitting nucleus and complex ## Synonyms - * thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002992] - * nuclear complex of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:256693] + * thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002992 ] + * nuclear complex of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:256693 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal plus ventral thalamus](../../UBERON/97/UBERON_0001897.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0008192.md b/md/UBERON/92/UBERON_0008192.md index a79f302bf5..a72fe3f784 100644 --- a/md/UBERON/92/UBERON_0008192.md +++ b/md/UBERON/92/UBERON_0008192.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008192 * *Label* = tendon of triceps brachii - * *Definition* = A tendon that attaches_to a triceps brachii. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tendon that attaches_to a triceps brachii. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * triceps brachii tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38380] + * triceps brachii tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38380 ] * triceps tendon ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [triceps brachii](../../UBERON/09/UBERON_0001509.md) and [tendon](../../UBERON/43/UBERON_0000043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0008292.md b/md/UBERON/92/UBERON_0008292.md index db780d4f59..226d2ae1c4 100644 --- a/md/UBERON/92/UBERON_0008292.md +++ b/md/UBERON/92/UBERON_0008292.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008292 * *Label* = vaned feather - * *Definition* = A feather that has_part a feather vane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A feather that has_part a feather vane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [feather](../../UBERON/22/UBERON_0000022.md) and [has_part](../../BFO/51/BFO_0000051.md) some [feather vane](../../UBERON/87/UBERON_0008287.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0008592.md b/md/UBERON/92/UBERON_0008592.md index b429d04c4d..b5098549cb 100644 --- a/md/UBERON/92/UBERON_0008592.md +++ b/md/UBERON/92/UBERON_0008592.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008592 * *Label* = levator labii superioris alaeque nasi - * *Definition* = The levator labii superioris alaeque nasi muscle is, translated from Latin, the 'lifter of the upper lip and of the wing of the nose'. It has the longest name of any muscle in an animal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] + * *Definition* = The levator labii superioris alaeque nasi muscle is, translated from Latin, the 'lifter of the upper lip and of the wing of the nose'. It has the longest name of any muscle in an animal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle ] ## Synonyms - * alaeque [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] - * elvis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] - * levator labii superioris alaequae nasi muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] - * levator labii superioris alaeque nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle] - * musculus levator labii superioris alaequae nasi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * alaeque [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle ] + * elvis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle ] + * levator labii superioris alaequae nasi muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle ] + * levator labii superioris alaeque nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle ] + * musculus levator labii superioris alaequae nasi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0008892.md b/md/UBERON/92/UBERON_0008892.md index cbd347404e..914339ba1f 100644 --- a/md/UBERON/92/UBERON_0008892.md +++ b/md/UBERON/92/UBERON_0008892.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0008992.md b/md/UBERON/92/UBERON_0008992.md index 45a4a47e81..a1075d54ab 100644 --- a/md/UBERON/92/UBERON_0008992.md +++ b/md/UBERON/92/UBERON_0008992.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008992 * *Label* = chorion frondosum - * *Definition* = The part of the chorion where the villi persist, forming the foetal part of the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003677] + * *Definition* = The part of the chorion where the villi persist, forming the foetal part of the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003677 ] ## Synonyms - * shaggy chorion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003677] + * shaggy chorion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003677 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009092.md b/md/UBERON/92/UBERON_0009092.md index d38e9d2ccd..8821111d99 100644 --- a/md/UBERON/92/UBERON_0009092.md +++ b/md/UBERON/92/UBERON_0009092.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009192.md b/md/UBERON/92/UBERON_0009192.md index 2af7698db9..5357399c02 100644 --- a/md/UBERON/92/UBERON_0009192.md +++ b/md/UBERON/92/UBERON_0009192.md @@ -6,7 +6,7 @@ ## Synonyms - * basi-sphenoid pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0003447] + * basi-sphenoid pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0003447 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009292.md b/md/UBERON/92/UBERON_0009292.md index 8d0e79dc7d..c43406e9a0 100644 --- a/md/UBERON/92/UBERON_0009292.md +++ b/md/UBERON/92/UBERON_0009292.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009592.md b/md/UBERON/92/UBERON_0009592.md index 180a8176a0..435eb7376f 100644 --- a/md/UBERON/92/UBERON_0009592.md +++ b/md/UBERON/92/UBERON_0009592.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009592 * *Label* = mesenchyme of interdigital region between pedal digits 3 and 4 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between toes 3 and 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000864] + * interdigital region between toes 3 and 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000864 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between pedal digits 3 and 4](../../UBERON/44/UBERON_0006044.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009692.md b/md/UBERON/92/UBERON_0009692.md index ca854e6d73..f3e1371911 100644 --- a/md/UBERON/92/UBERON_0009692.md +++ b/md/UBERON/92/UBERON_0009692.md @@ -7,10 +7,10 @@ ## Synonyms - * auditory tube lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004118] - * lumen of auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60079] - * lumen of eustachian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60079] - * pharyngotympanic tube lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:60079] + * auditory tube lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004118 ] + * lumen of auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60079 ] + * lumen of eustachian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60079 ] + * pharyngotympanic tube lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:60079 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ cavity](../../UBERON/58/UBERON_0002558.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngotympanic tube](../../UBERON/93/UBERON_0002393.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009892.md b/md/UBERON/92/UBERON_0009892.md index 92798b3b2c..8839d579d5 100644 --- a/md/UBERON/92/UBERON_0009892.md +++ b/md/UBERON/92/UBERON_0009892.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0009992.md b/md/UBERON/92/UBERON_0009992.md index 7740102465..1e2824ed99 100644 --- a/md/UBERON/92/UBERON_0009992.md +++ b/md/UBERON/92/UBERON_0009992.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009992 * *Label* = cranial sensory ganglion - * *Definition* = the ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion] + * *Definition* = the ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion ] * *Comment* = Editor note: check this - merge into cranial ganglion? WP: the geniculate, petrosal and nodose ganglia, appended respectively to cranial nerves VII, IX and X. Other ontology notes: has no subtypes in FMA ## Synonyms - * cranial nerve sensory ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5887] - * ganglion sensorium cranialium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5887] - * sensory ganglion of cranial nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:5887] + * cranial nerve sensory ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5887 ] + * ganglion sensorium cranialium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5887 ] + * sensory ganglion of cranial nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:5887 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009992 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0010092.md b/md/UBERON/92/UBERON_0010092.md index 77572236de..3fd10bd49f 100644 --- a/md/UBERON/92/UBERON_0010092.md +++ b/md/UBERON/92/UBERON_0010092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010092 * *Label* = future metencephalon - * *Definition* = A developing anatomical structure that has_potential_to_develop_into a metencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A developing anatomical structure that has_potential_to_develop_into a metencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [metencephalon](../../UBERON/95/UBERON_0001895.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0010192.md b/md/UBERON/92/UBERON_0010192.md index 0695264355..fd54c5715e 100644 --- a/md/UBERON/92/UBERON_0010192.md +++ b/md/UBERON/92/UBERON_0010192.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010192 * *Label* = genital artery - * *Definition* = One of the laterally paired arteries that supply the gonads. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonadal_artery] + * *Definition* = One of the laterally paired arteries that supply the gonads. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonadal_artery ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [supplies](../../FMA/03/FMA_86003.md) some [gonad](../../UBERON/91/UBERON_0000991.md) and [systemic artery](../../UBERON/73/UBERON_0004573.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0010292.md b/md/UBERON/92/UBERON_0010292.md index d703791790..e55390f9eb 100644 --- a/md/UBERON/92/UBERON_0010292.md +++ b/md/UBERON/92/UBERON_0010292.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010292 * *Label* = episcleral layer of eyeball - * *Definition* = The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Episcleral_layer] + * *Definition* = The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Episcleral_layer ] ## Synonyms - * episclera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58362] - * episcleral layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58362] - * lamina episcleralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Episcleral_layer[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * episclera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58362 ] + * episcleral layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58362 ] + * lamina episcleralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Episcleral_layer, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:58362 * SCTID:368850003 - * UMLS:C0229109 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Episclera] + * UMLS:C0229109 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Episclera ] * Wikipedia:Episcleral_layer * ncithesaurus:Episclera @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0010392.md b/md/UBERON/92/UBERON_0010392.md index 17f9552c59..66f4bedc8c 100644 --- a/md/UBERON/92/UBERON_0010392.md +++ b/md/UBERON/92/UBERON_0010392.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0010892.md b/md/UBERON/92/UBERON_0010892.md index 0848e00cff..1afc7ad980 100644 --- a/md/UBERON/92/UBERON_0010892.md +++ b/md/UBERON/92/UBERON_0010892.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010892 * *Label* = mesethmoid element - * *Definition* = region of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = region of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * ventral nasal capsule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:21270050] - * mesethmoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000303] + * ventral nasal capsule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:21270050 ] + * mesethmoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000303 ] ## Cross-references @@ -35,8 +35,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Endochondral ossification of the anteromedial portion of the braincase.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011092.md b/md/UBERON/92/UBERON_0011092.md index ec3b7afe37..e7f427625d 100644 --- a/md/UBERON/92/UBERON_0011092.md +++ b/md/UBERON/92/UBERON_0011092.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011092 * *Label* = right pelvic girdle region - * *Definition* = A pelvic girdle region that is in the right side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pelvic girdle region that is in the right side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16582[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * right pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16582, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011192.md b/md/UBERON/92/UBERON_0011192.md index 51210e069e..bedc60bc5e 100644 --- a/md/UBERON/92/UBERON_0011192.md +++ b/md/UBERON/92/UBERON_0011192.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011192 * *Label* = superior ophthalmic vein - * *Definition* = The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ophthalmic_vein] + * *Definition* = The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ophthalmic_vein ] ## Synonyms - * anterior ethmoidal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ophthalmic_vein] - * posterior ethmoidal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ophthalmic_vein] - * superior ophthalmic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_ophthalmic_vein] + * anterior ethmoidal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ophthalmic_vein ] + * posterior ethmoidal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ophthalmic_vein ] + * superior ophthalmic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_ophthalmic_vein ] * superior opthalmic vein ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011392.md b/md/UBERON/92/UBERON_0011392.md index 81b479e5a3..7703eb4068 100644 --- a/md/UBERON/92/UBERON_0011392.md +++ b/md/UBERON/92/UBERON_0011392.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011392 * *Label* = internal elastic membrane - * *Definition* = a layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Internal_elastic_lamina] + * *Definition* = a layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Internal_elastic_lamina ] ## Synonyms - * inner elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68205] - * internal elastic lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68205] + * inner elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68205 ] + * internal elastic lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68205 ] ## Cross-references * FMA:68205 * MA:0002863 * SCTID:86405007 - * UMLS:C1512870 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Elastic_Membrane] + * UMLS:C1512870 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Elastic_Membrane ] * Wikipedia:Internal_elastic_lamina * ncithesaurus:Internal_Elastic_Membrane @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011592.md b/md/UBERON/92/UBERON_0011592.md index bb4db79279..35aff5325a 100644 --- a/md/UBERON/92/UBERON_0011592.md +++ b/md/UBERON/92/UBERON_0011592.md @@ -6,7 +6,7 @@ ## Synonyms - * upper jaw future lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002120] + * upper jaw future lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002120 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011692.md b/md/UBERON/92/UBERON_0011692.md index 23d3eb18ef..81f64c5118 100644 --- a/md/UBERON/92/UBERON_0011692.md +++ b/md/UBERON/92/UBERON_0011692.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011692 * *Label* = enameloid - * *Definition* = Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000113[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000113, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * bitypic enamel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * durodentine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * enameloid tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * vitrodentine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * bitypic enamel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * durodentine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * enameloid tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * vitrodentine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011792.md b/md/UBERON/92/UBERON_0011792.md index 2e4364765b..d7cffdd975 100644 --- a/md/UBERON/92/UBERON_0011792.md +++ b/md/UBERON/92/UBERON_0011792.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011792 * *Label* = feather muscle - * *Definition* = Similar to erector pili muscles of mammals; attached to the sides of the follicle; capable of elevating or lowering entire groups of feathers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/feather+follicle] + * *Definition* = Similar to erector pili muscles of mammals; attached to the sides of the follicle; capable of elevating or lowering entire groups of feathers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/feather+follicle ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0011892.md b/md/UBERON/92/UBERON_0011892.md index f689037d51..e1ff22e1a9 100644 --- a/md/UBERON/92/UBERON_0011892.md +++ b/md/UBERON/92/UBERON_0011892.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011892 * *Label* = anterior uvea - * *Definition* = Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005194] + * *Definition* = Front (ventral) portion of the vascular, pigmentary, or middle coat of the eye, including the ciliary body and the iris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005194 ] ## Synonyms - * Haller tunica vascula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005194] + * Haller tunica vascula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005194 ] * anterior part of uveal tract * anterior uveal tract * anterior vascular layer of the eyeball * anterior vascular tunic of the eye - * tunica vasculosa bulbosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005194] + * tunica vasculosa bulbosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005194 ] * ventral uveal tract * ciliary body and iris - * vasculosa oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005194] + * vasculosa oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005194 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0012292.md b/md/UBERON/92/UBERON_0012292.md index 33c527e9e4..ae3ec02c81 100644 --- a/md/UBERON/92/UBERON_0012292.md +++ b/md/UBERON/92/UBERON_0012292.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012292 * *Label* = embryonic cloacal fold - * *Definition* = One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011836[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * *Definition* = One of the pair of mesenchymal swellings (folds) located on either side of the cloacal membrane during the indifferent stage of embryonic development; cranial to the cloacal membrane the folds unite to form the genital tubercle; caudally the folds are subdivided into urogenital folds anteriorly and anal folds posteriorly [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011836, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] * *Comment* = We presume this is distinct from AAO:0001003, an external integumentary structure - check with amphibian anatomy ontology developers. AO notes: the text def states mesenchymal swelling, EHDAA2 splits into mesenchymal and epithelial parts ## Synonyms - * cloacal fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004009] + * cloacal fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004009 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012292 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0013192.md b/md/UBERON/92/UBERON_0013192.md index 24949f1b9c..b4b4eb4db3 100644 --- a/md/UBERON/92/UBERON_0013192.md +++ b/md/UBERON/92/UBERON_0013192.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013192 * *Label* = ovarian medulla - * *Definition* = The medulla of ovary (or Zona vasculosa of Waldeyer) is a highly vascular stroma in the center of the ovary. It forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves. This stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter: it does not contain any ovarian follicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medulla_of_ovary] + * *Definition* = The medulla of ovary (or Zona vasculosa of Waldeyer) is a highly vascular stroma in the center of the ovary. It forms from embryonic mesenchyme and contains blood vessels, lymphatic vessels, and nerves. This stroma forms the tissue of the hilum by which the ovarian ligament is attached, and through which the blood vessels enter: it does not contain any ovarian follicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medulla_of_ovary ] * *Comment* = composed of loose connective tissue that contains blood vessels, lymph vessels and nerves[NCIT] ## Synonyms - * medulla of ovary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18616] - * medulla ovarii (zona vasculosa) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18616] - * zona vasculosa of Waldeyer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medulla_of_ovary] + * medulla of ovary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18616 ] + * medulla ovarii (zona vasculosa) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18616 ] + * zona vasculosa of Waldeyer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medulla_of_ovary ] ## Cross-references * FMA:18616 - * UMLS:C0227879 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ovarian_Medulla] + * UMLS:C0227879 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ovarian_Medulla ] * Wikipedia:Medulla_of_ovary * ncithesaurus:Ovarian_Medulla @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medulla](../../UBERON/58/UBERON_0000958.md) and [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013192 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0013492.md b/md/UBERON/92/UBERON_0013492.md index 5352f45927..7e18fc6752 100644 --- a/md/UBERON/92/UBERON_0013492.md +++ b/md/UBERON/92/UBERON_0013492.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013492 * *Label* = prevertebral cervical fascia - * *Definition* = The prevertebral fascia (or prevertebral layer of cervical fascia) is a fascia in the neck. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_fascia] + * *Definition* = The prevertebral fascia (or prevertebral layer of cervical fascia) is a fascia in the neck. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_fascia ] ## Synonyms - * lamina prevertebralis (fascia cervicalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46560] - * prevertebral fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46560] - * prevertebral layer of cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46560] - * prevertebral layer of deep cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46560] - * prevertebral layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_fascia] - * prevertebral layer of cervical fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prevertebral_fascia] + * lamina prevertebralis (fascia cervicalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46560 ] + * prevertebral fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46560 ] + * prevertebral layer of cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46560 ] + * prevertebral layer of deep cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46560 ] + * prevertebral layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_fascia ] + * prevertebral layer of cervical fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prevertebral_fascia ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013492 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0013592.md b/md/UBERON/92/UBERON_0013592.md index 0e946016f9..6b0aa7d1f0 100644 --- a/md/UBERON/92/UBERON_0013592.md +++ b/md/UBERON/92/UBERON_0013592.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0013692.md b/md/UBERON/92/UBERON_0013692.md index 7afb5d847f..af6abab82a 100644 --- a/md/UBERON/92/UBERON_0013692.md +++ b/md/UBERON/92/UBERON_0013692.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013692 * *Label* = inframammary fold - * *Definition* = Inframammary fold, inframammary crease or inframammary line is the feature of human anatomy which is a natural boundary of a breast from below, the place where the breast and the chest meet. The choice of the term depends on the prominence of the feature. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2350] + * *Definition* = Inframammary fold, inframammary crease or inframammary line is the feature of human anatomy which is a natural boundary of a breast from below, the place where the breast and the chest meet. The choice of the term depends on the prominence of the feature. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2350 ] ## Synonyms - * inframammary breast [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2350] - * inframammary crease [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2350] + * inframammary breast [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2350 ] + * inframammary crease [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2350 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0014392.md b/md/UBERON/92/UBERON_0014392.md index f3bd3f6602..808b124562 100644 --- a/md/UBERON/92/UBERON_0014392.md +++ b/md/UBERON/92/UBERON_0014392.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014392 * *Label* = sweat of palm - * *Definition* = Sweat that is produced by the glands on the palmar and plantar surfaces. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Sweat that is produced by the glands on the palmar and plantar surfaces. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * palm sweat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63084] - * palmar sweat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63084] + * palm sweat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63084 ] + * palmar sweat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63084 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [produced_by](../../RO/01/RO_0003001.md) some [palmar/plantar sweat gland](../../UBERON/91/UBERON_0014391.md) and [sweat](../../UBERON/89/UBERON_0001089.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014392 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0014592.md b/md/UBERON/92/UBERON_0014592.md index 9474dce949..937556e6d1 100644 --- a/md/UBERON/92/UBERON_0014592.md +++ b/md/UBERON/92/UBERON_0014592.md @@ -6,12 +6,12 @@ ## Synonyms - * anterior nucleus of hypothalamus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1139[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * AHNd [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1139[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior hypothalamic dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNd] - * anterior hypothalamic nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNd] - * anterior hypothalamic nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHD] - * anterior hypothalamic nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHNd] + * anterior nucleus of hypothalamus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1139, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * AHNd [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1139, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior hypothalamic dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNd ] + * anterior hypothalamic nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNd ] + * anterior hypothalamic nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHD ] + * anterior hypothalamic nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHNd ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014592 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0014692.md b/md/UBERON/92/UBERON_0014692.md index 488eb87bc5..a397b226ba 100644 --- a/md/UBERON/92/UBERON_0014692.md +++ b/md/UBERON/92/UBERON_0014692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014692 * *Label* = superficial epigastric vein - * *Definition* = The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superficial_epigastric_vein] + * *Definition* = The superficial epigastric vein is a vein which travels with the superficial epigastric artery. It joins the accessory saphenous vein near the fossa ovalis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superficial_epigastric_vein ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014692 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0014792.md b/md/UBERON/92/UBERON_0014792.md index e0600a37ea..35160b651f 100644 --- a/md/UBERON/92/UBERON_0014792.md +++ b/md/UBERON/92/UBERON_0014792.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014792 * *Label* = musculature of pelvic complex - * *Definition* = Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pelvic complex. The pelvic complex comprises the pelvic girdle and the associated limb or fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscles of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71297] - * musculature of lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71297] - * musculi membri inferioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] + * muscles of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71297 ] + * musculature of lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71297 ] + * musculi membri inferioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014792 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0014892.md b/md/UBERON/92/UBERON_0014892.md index 13e1a451bf..a4138aa970 100644 --- a/md/UBERON/92/UBERON_0014892.md +++ b/md/UBERON/92/UBERON_0014892.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014892 * *Label* = skeletal muscle organ - * *Definition* = A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:dos] + * *Definition* = A muscle organ that consists of skeletal muscle tissue ensheathed in epimysium, that develops from myotome and that is innervated by some somatic motor neuron. Skeletal muscles are typically attached (via a tendon) to a bone but there are exceptions (e.g. intrinsic tongue muscles). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:dos ] ## Synonyms @@ -48,15 +48,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) and [develops from](../../RO/02/RO_0002202.md) some [myotome](../../UBERON/82/UBERON_0003082.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) and [surrounded_by](../../RO/19/RO_0002219.md) some [epimysium](../../UBERON/99/UBERON_0011899.md) and [synapsed by](../../RO/03/RO_0002103.md) some [motor neuron](../../CL/00/CL_0000100.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014892 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_0015092.md b/md/UBERON/92/UBERON_0015092.md index 2afad87d6f..b86b6d7cf8 100644 --- a/md/UBERON/92/UBERON_0015092.md +++ b/md/UBERON/92/UBERON_0015092.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal carpal bone 3 endochondral element](../../UBERON/90/UBERON_0015090.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015092 + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2000092.md b/md/UBERON/92/UBERON_2000092.md index fcf634891a..b790497751 100644 --- a/md/UBERON/92/UBERON_2000092.md +++ b/md/UBERON/92/UBERON_2000092.md @@ -6,7 +6,7 @@ ## Synonyms - * midline [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000092] + * midline [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000092 ] ## Cross-references @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_2000392.md b/md/UBERON/92/UBERON_2000392.md index 3885defd2e..dd245caa18 100644 --- a/md/UBERON/92/UBERON_2000392.md +++ b/md/UBERON/92/UBERON_2000392.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000392 * *Label* = median tuberal portion - * *Definition* = Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3764351209] + * *Definition* = Multi-tissue structure which is part of the hypothalamus and consists of caudal and ventral zones, and is separated from the dorsal hypothalamic zone by a deep ventral sulcus. From Neuroanatomy of the Zebrafish Brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3764351209 ] ## Synonyms @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2000492.md b/md/UBERON/92/UBERON_2000492.md index 31420883ed..23b7a9ecc4 100644 --- a/md/UBERON/92/UBERON_2000492.md +++ b/md/UBERON/92/UBERON_2000492.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2000592.md b/md/UBERON/92/UBERON_2000592.md index 5cb3c94e56..2888bf7de7 100644 --- a/md/UBERON/92/UBERON_2000592.md +++ b/md/UBERON/92/UBERON_2000592.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2000692.md b/md/UBERON/92/UBERON_2000692.md index f8f70ca80d..687df92b2a 100644 --- a/md/UBERON/92/UBERON_2000692.md +++ b/md/UBERON/92/UBERON_2000692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000692 * *Label* = symplectic - * *Definition* = Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = When the interhyal bone or cartilage is present it articulates at the articulation of the hyomandibula and symplectic. ## Synonyms @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2000792.md b/md/UBERON/92/UBERON_2000792.md index ac447aeff2..93ab7e666b 100644 --- a/md/UBERON/92/UBERON_2000792.md +++ b/md/UBERON/92/UBERON_2000792.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 16 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000792[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 16 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000792, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_2000892.md b/md/UBERON/92/UBERON_2000892.md index 7e9c01ce1b..9f47b1f701 100644 --- a/md/UBERON/92/UBERON_2000892.md +++ b/md/UBERON/92/UBERON_2000892.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000892 * *Label* = hypaxial region somite 12 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001192.md b/md/UBERON/92/UBERON_2001192.md index f7b507e2f7..c037620636 100644 --- a/md/UBERON/92/UBERON_2001192.md +++ b/md/UBERON/92/UBERON_2001192.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001192 * *Label* = supraneural 3 bone - * *Definition* = Supraneural bone that is located dorsal to vertebrae 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Supraneural bone that is located dorsal to vertebrae 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = In otophysans, supraneural 3 bone is part of the neural complex and fuses in development with neural arches 3 and 4. ## Synonyms - * large supraneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:doi:10.1046/j.1096-3642.2002.00014.x] - * sn3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001192] + * large supraneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:doi:10.1046/j.1096-3642.2002.00014.x ] + * sn3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001192 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001392.md b/md/UBERON/92/UBERON_2001392.md index 0b6f359cab..c2a448d0a9 100644 --- a/md/UBERON/92/UBERON_2001392.md +++ b/md/UBERON/92/UBERON_2001392.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001392 * *Label* = parapophysis 1 - * *Definition* = Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * basipophysis 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001392] - * lateral process 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001392] + * basipophysis 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001392 ] + * lateral process 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001392 ] ## Cross-references @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001592.md b/md/UBERON/92/UBERON_2001592.md index c93981e45c..b5a96d0278 100644 --- a/md/UBERON/92/UBERON_2001592.md +++ b/md/UBERON/92/UBERON_2001592.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001592 * *Label* = claustrum bone - * *Definition* = Endochondral bone, membrane bone, and Weberian ossicle that is located dorsal to the scaphium. The claustrum bone is bilaterally paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone, membrane bone, and Weberian ossicle that is located dorsal to the scaphium. The claustrum bone is bilaterally paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * first Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001592] + * first Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001592 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001692.md b/md/UBERON/92/UBERON_2001692.md index e5828f155e..def95bccf4 100644 --- a/md/UBERON/92/UBERON_2001692.md +++ b/md/UBERON/92/UBERON_2001692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001692 * *Label* = median premaxilla - * *Definition* = Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Recorded in trichomycterid subfamilies Stegophilinae and Vandelliinae (Baskin, 1973). submitted by Mario de Pinna. ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001792.md b/md/UBERON/92/UBERON_2001792.md index 5a66bcbe7a..5138bc9891 100644 --- a/md/UBERON/92/UBERON_2001792.md +++ b/md/UBERON/92/UBERON_2001792.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001792 * *Label* = pharyngobranchial 3 bone uncinate process - * *Definition* = Bony projection that is part of the pharyngobranchial 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bony projection that is part of the pharyngobranchial 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001892.md b/md/UBERON/92/UBERON_2001892.md index 75de95f18e..58030b46fa 100644 --- a/md/UBERON/92/UBERON_2001892.md +++ b/md/UBERON/92/UBERON_2001892.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001892 * *Label* = interhyal element - * *Definition* = Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2001992.md b/md/UBERON/92/UBERON_2001992.md index daa783452b..213fcba5c8 100644 --- a/md/UBERON/92/UBERON_2001992.md +++ b/md/UBERON/92/UBERON_2001992.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001992 * *Label* = branched anal fin ray - * *Definition* = Anal fin lepidotrichium that is distally branched. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anal fin lepidotrichium that is distally branched. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anal fin branched ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001992] + * anal fin branched ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001992 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2002092.md b/md/UBERON/92/UBERON_2002092.md index 6098954c8d..8397cf4402 100644 --- a/md/UBERON/92/UBERON_2002092.md +++ b/md/UBERON/92/UBERON_2002092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002092 * *Label* = rostral cartilage - * *Definition* = Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2002192.md b/md/UBERON/92/UBERON_2002192.md index bb4b4ff231..76040bcb45 100644 --- a/md/UBERON/92/UBERON_2002192.md +++ b/md/UBERON/92/UBERON_2002192.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002192 * *Label* = dorsolateral motor nucleus of vagal nerve - * *Definition* = Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-090417-11] + * *Definition* = Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-090417-11 ] ## Synonyms - * dlX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002192] + * dlX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002192 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2002292.md b/md/UBERON/92/UBERON_2002292.md index e379fcf294..d5a2728803 100644 --- a/md/UBERON/92/UBERON_2002292.md +++ b/md/UBERON/92/UBERON_2002292.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002292 * *Label* = epaxial basal fulcrum - * *Definition* = Basal fulcrum that is positioned at the dorsal or anterodorsal margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Basal fulcrum that is positioned at the dorsal or anterodorsal margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal basal fulcrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002292] - * dorsal basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002292[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * epaxial basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002292[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * dorsal basal fulcrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002292 ] + * dorsal basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002292, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * epaxial basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002292, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_2005192.md b/md/UBERON/92/UBERON_2005192.md index e95a0a4c6a..2aeea04a84 100644 --- a/md/UBERON/92/UBERON_2005192.md +++ b/md/UBERON/92/UBERON_2005192.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral intermediate 2 caudal interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005192] + * rostral intermediate 2 caudal interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005192 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_2005292.md b/md/UBERON/92/UBERON_2005292.md index 034184abb7..118849454c 100644 --- a/md/UBERON/92/UBERON_2005292.md +++ b/md/UBERON/92/UBERON_2005292.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005292 * *Label* = distal late tubule - * *Definition* = Portion of the renal tubule which is just posterior to the distal early tubule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Portion of the renal tubule which is just posterior to the distal early tubule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000192.md b/md/UBERON/92/UBERON_3000192.md index 642987c4fb..5159cd3aaa 100644 --- a/md/UBERON/92/UBERON_3000192.md +++ b/md/UBERON/92/UBERON_3000192.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000292.md b/md/UBERON/92/UBERON_3000292.md index fff1840768..0d93bfce42 100644 --- a/md/UBERON/92/UBERON_3000292.md +++ b/md/UBERON/92/UBERON_3000292.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000292 * *Label* = medial ramus of pterygoid - * *Definition* = In a triradiate pterygoid, the process that extends medially towards the otic capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In a triradiate pterygoid, the process that extends medially towards the otic capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * ramus interior of pterygoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000292] + * ramus interior of pterygoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000292 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000492.md b/md/UBERON/92/UBERON_3000492.md index 67de54406e..0e09a4508c 100644 --- a/md/UBERON/92/UBERON_3000492.md +++ b/md/UBERON/92/UBERON_3000492.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000492 * *Label* = processus infrafenestralis - * *Definition* = Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * dorsal crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000492] + * dorsal crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000492 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000692.md b/md/UBERON/92/UBERON_3000692.md index 20835c42e3..3a029cebdb 100644 --- a/md/UBERON/92/UBERON_3000692.md +++ b/md/UBERON/92/UBERON_3000692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000692 * *Label* = pedicel - * *Definition* = Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000792.md b/md/UBERON/92/UBERON_3000792.md index e6aed20001..cf7345f355 100644 --- a/md/UBERON/92/UBERON_3000792.md +++ b/md/UBERON/92/UBERON_3000792.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000792 * *Label* = anterior ramus of cleithrum - * *Definition* = Subdivision of the cleithrum that extends along the anterior edge of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Subdivision of the cleithrum that extends along the anterior edge of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3000992.md b/md/UBERON/92/UBERON_3000992.md index 0cac665c92..8066438520 100644 --- a/md/UBERON/92/UBERON_3000992.md +++ b/md/UBERON/92/UBERON_3000992.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000992 * *Label* = obsolete principal cavity - * *Definition* = The largest part of the nasal cavity, containing the olfactory epithelium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = The largest part of the nasal cavity, containing the olfactory epithelium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:3000089 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_3010092.md b/md/UBERON/92/UBERON_3010092.md index 3a1cb61bfa..2d1f695bf8 100644 --- a/md/UBERON/92/UBERON_3010092.md +++ b/md/UBERON/92/UBERON_3010092.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010092 * *Label* = basitrabecular process - * *Definition* = A process of the otic capsule that will bridge to the palatoquadrate basal process. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A process of the otic capsule that will bridge to the palatoquadrate basal process. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3010192.md b/md/UBERON/92/UBERON_3010192.md index a1432ded01..5b6c9d9801 100644 --- a/md/UBERON/92/UBERON_3010192.md +++ b/md/UBERON/92/UBERON_3010192.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3010292.md b/md/UBERON/92/UBERON_3010292.md index 00a90f8814..d43836c34e 100644 --- a/md/UBERON/92/UBERON_3010292.md +++ b/md/UBERON/92/UBERON_3010292.md @@ -6,7 +6,7 @@ ## Synonyms - * germ cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010292] + * germ cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010292 ] ## Cross-references @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000586 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/92/UBERON_3010392.md b/md/UBERON/92/UBERON_3010392.md index 6a31e6047c..9bc129cae8 100644 --- a/md/UBERON/92/UBERON_3010392.md +++ b/md/UBERON/92/UBERON_3010392.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3010692.md b/md/UBERON/92/UBERON_3010692.md index cdafd6dbb4..80d90f623d 100644 --- a/md/UBERON/92/UBERON_3010692.md +++ b/md/UBERON/92/UBERON_3010692.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010692 * *Label* = m. cucullaris - * *Definition* = Muscle which originates on the prootic and the otic ramus of the squamosal and inserts on the anterior border of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates on the prootic and the otic ramus of the squamosal and inserts on the anterior border of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_3010792.md b/md/UBERON/92/UBERON_3010792.md index 1ded7841ff..6d23a1a5d0 100644 --- a/md/UBERON/92/UBERON_3010792.md +++ b/md/UBERON/92/UBERON_3010792.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/92/UBERON_4200092.md b/md/UBERON/92/UBERON_4200092.md index c0080b8a97..01045c35ea 100644 --- a/md/UBERON/92/UBERON_4200092.md +++ b/md/UBERON/92/UBERON_4200092.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0000093.md b/md/UBERON/93/UBERON_0000093.md index 2019266b80..955d4a33c0 100644 --- a/md/UBERON/93/UBERON_0000093.md +++ b/md/UBERON/93/UBERON_0000093.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000093 * *Label* = sulcus - * *Definition* = a depression or fissure in the surface of an organ. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sulcus_(anatomy)] + * *Definition* = a depression or fissure in the surface of an organ. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sulcus_(anatomy) ] ## Synonyms @@ -31,8 +31,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-04-09T06:23:22Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0000993.md b/md/UBERON/93/UBERON_0000993.md index 9235b7079a..0e02e33c58 100644 --- a/md/UBERON/93/UBERON_0000993.md +++ b/md/UBERON/93/UBERON_0000993.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000993 * *Label* = oviduct - * *Definition* = passage from the ovaries to the outside of the body[Wikipedia:Oviduct]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oviduct] + * *Definition* = passage from the ovaries to the outside of the body[Wikipedia:Oviduct]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oviduct ] * *Comment* = Usage notes: sometimes oviduct is used interchangeably with follaopian tube. Here they are different - the oviduct connects the gonad to the outside in a variety of animals. The mammal-class fallopian tube is derived from the mullerian duct and connects the gonads to the uterus. Taxon notes: in birds divided into infundibulum, magnum, isthmus, uterus, and vagina ## Synonyms * uterine tube - * tuba uterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000980] - * tuba uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000980] + * tuba uterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000980 ] + * tuba uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000980 ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A13.706 * MIAA:0000126 * TAO:0000560 - * UMLS:C0029954 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Oviduct] + * UMLS:C0029954 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Oviduct ] * VHOG:0001136 * Wikipedia:Oviduct * XAO:0003052 @@ -57,8 +57,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A passage through which ova leave the maternal body or pass to an organ communicating with the exterior of the body. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all remaining vertebrates (i.e., coelacanths, lungfishes, amphibians, reptiles, birds, and mammals), the oviduct arises in ontogeny as a longitudinal, groovelike invagination of the coelomic epithelium on the lateral surface of the mesonephros.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001093.md b/md/UBERON/93/UBERON_0001093.md index 80284dff33..7172b641c7 100644 --- a/md/UBERON/93/UBERON_0001093.md +++ b/md/UBERON/93/UBERON_0001093.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001093 * *Label* = vertebral bone 2 - * *Definition* = second cervical vertebra (C2) of the spine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axis_(anatomy)] + * *Definition* = second cervical vertebra (C2) of the spine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axis_(anatomy) ] * *Comment* = note: not the same as ZFA term 'axis' ## Synonyms @@ -11,13 +11,13 @@ * C2 vertebra * axis (CII) * axis vertebra - * cervical axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004608] - * cervical vertebra 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * cervical vertebra 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001422] + * cervical axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004608 ] + * cervical vertebra 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001422 ] + * cervical vertebra 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] * second cervical vertebra - * vertebra 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001168] + * vertebra 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001168 ] * C2 - * axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -30,7 +30,7 @@ * OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA * SCTID:181819004 * TAO:0001168 - * UMLS:C0004457 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:C2_Vertebra] + * UMLS:C0004457 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:C2_Vertebra ] * Wikipedia:Axis_(anatomy) * ZFA:0001168 * ncithesaurus:C2_Vertebra @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vertebra that is posteriorly adjacent to vertebra 1.[TAO] * *[vertebra number](../../UBPROP/07/UBPROP_0000107.md)* = 2 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001193.md b/md/UBERON/93/UBERON_0001193.md index 175c9e3c72..cbfb38cbb9 100644 --- a/md/UBERON/93/UBERON_0001193.md +++ b/md/UBERON/93/UBERON_0001193.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001193 * *Label* = hepatic artery - * *Definition* = An artery that supplies the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hepatic_artery_proper[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = An artery that supplies the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hepatic_artery_proper, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Usage notes: currently defined in a generic fashion. ## Synonyms - * arteria hepatica propria [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * arteria hepatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004307] + * arteria hepatica propria [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * arteria hepatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004307 ] ## Cross-references @@ -22,7 +22,7 @@ * OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA * SCTID:76015000 * TAO:0005161 - * UMLS:C0019145 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Artery] + * UMLS:C0019145 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Artery ] * Wikipedia:Hepatic_artery_proper * ZFA:0005161 * galen:HepaticArtery @@ -41,7 +41,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [liver](../../UBERON/07/UBERON_0002107.md) ## Other Logical Axioms @@ -49,8 +49,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery that supplies blood to the liver.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001293.md b/md/UBERON/93/UBERON_0001293.md index 3d5bff17ef..ecad3330ae 100644 --- a/md/UBERON/93/UBERON_0001293.md +++ b/md/UBERON/93/UBERON_0001293.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001293 * *Label* = outer medulla of kidney - * *Definition* = The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * *Definition* = The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Synonyms * outer renal medulla * outer zone of medulla of kidney * outer zone of renal medulla - * renal outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001746] - * zona externa (medullaris renalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17733[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * kidney outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001746] - * set of outer region of renal pyramids [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17733] + * renal outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001746 ] + * zona externa (medullaris renalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17733, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * kidney outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001746 ] + * set of outer region of renal pyramids [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17733 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001393.md b/md/UBERON/93/UBERON_0001393.md index d0312c0448..e945811c51 100644 --- a/md/UBERON/93/UBERON_0001393.md +++ b/md/UBERON/93/UBERON_0001393.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001393 * *Label* = auditory cortex - * *Definition* = The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_cortex] + * *Definition* = The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_cortex ] ## Synonyms - * A1 (primary auditory cortex) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * Auditory areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AUD] - * BA41 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * BA42 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann area 41 & 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * Brodmann area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * Brodmann area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * anterior transverse temporal area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * auditory area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004343] - * auditory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * posterior transverse temporal area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Primary_auditory_cortex] - * primary auditory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auditory_cortex] - * temporal auditory neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GEO:GSE13344] + * A1 (primary auditory cortex) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * Auditory areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AUD ] + * BA41 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * BA42 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann area 41 & 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * Brodmann area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * Brodmann area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * anterior transverse temporal area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * auditory area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004343 ] + * auditory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * posterior transverse temporal area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Primary_auditory_cortex ] + * primary auditory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auditory_cortex ] + * temporal auditory neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GEO:GSE13344 ] ## Cross-references @@ -32,7 +32,7 @@ * MA:0000942 * MESH:A08.186.211.730.885.213.863.297 * NeuroNames:1556 - * UMLS:C0004302 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auditory_Cortex] + * UMLS:C0004302 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auditory_Cortex ] * Wikipedia:Auditory_cortex * http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Brodmann_41_42.png/200px-Brodmann_41_42.png * ncithesaurus:Auditory_Cortex @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001493.md b/md/UBERON/93/UBERON_0001493.md index acf87d21a9..9a14d4d3e6 100644 --- a/md/UBERON/93/UBERON_0001493.md +++ b/md/UBERON/93/UBERON_0001493.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001493 * *Label* = axillary nerve - * *Definition* = The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_nerve] + * *Definition* = The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_nerve ] ## Synonyms * circumflex humeral nerve - * auxillery nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_nerve] - * circumflex nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_nerve] - * nervus axillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus axillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_nerve] + * auxillery nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_nerve ] + * circumflex nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_nerve ] + * nervus axillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_nerve ] + * nervus axillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001166 * OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA * SCTID:181009006 - * UMLS:C0228885 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axillary_Nerve] + * UMLS:C0228885 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axillary_Nerve ] * Wikipedia:Axillary_nerve * http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001593.md b/md/UBERON/93/UBERON_0001593.md index 12c368c15e..47b2c37420 100644 --- a/md/UBERON/93/UBERON_0001593.md +++ b/md/UBERON/93/UBERON_0001593.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001593 * *Label* = venous plexus - * *Definition* = a congregation of multiple veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venous_plexus] + * *Definition* = a congregation of multiple veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venous_plexus ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * venous network - * plexus venosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * rete venosum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Venous_plexus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus venosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * rete venosum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Venous_plexus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001693.md b/md/UBERON/93/UBERON_0001693.md index e2a4bdb960..837f44e0d6 100644 --- a/md/UBERON/93/UBERON_0001693.md +++ b/md/UBERON/93/UBERON_0001693.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001693 * *Label* = exoccipital bone - * *Definition* = Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_parts_of_occipital_bone[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_parts_of_occipital_bone, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom ## Synonyms - * exoccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52859] - * exoccipital@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000661] - * exoccipitals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000661[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * lateral part of occipital bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52859] - * occipital latral@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000661] - * pleurinial@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000661] - * pleurinioste@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000661] - * pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_parts_of_occipital_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_parts_of_occipital_bone] + * exoccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52859 ] + * exoccipital@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000661 ] + * exoccipitals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000661, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * lateral part of occipital bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52859 ] + * occipital latral@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000661 ] + * pleurinial@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000661 ] + * pleurinioste@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000661 ] + * pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_parts_of_occipital_bone ] + * pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_parts_of_occipital_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -52,7 +52,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [exoccipital endochondral element](../../UBERON/51/UBERON_0015051.md) ## Other Logical Axioms @@ -67,8 +67,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In some teleosts the exoccipital dorsally contacts the supraoccipital directly or through connective tissue.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001793.md b/md/UBERON/93/UBERON_0001793.md index 967d2eacb1..d0a220b832 100644 --- a/md/UBERON/93/UBERON_0001793.md +++ b/md/UBERON/93/UBERON_0001793.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001793 * *Label* = nerve fiber layer of retina - * *Definition* = Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve[ZFA]. The retinal nerve fiber layer (nerve fiber layer, stratum opticum, RNFL) is formed by the expansion of the fibers of the optic nerve; it is thickest near the porus opticus, gradually diminishing toward the ora serrata. As the nerve fibers pass through the lamina cribrosa sclerae they lose their medullary sheaths and are continued onward through the choroid and retina as simple axis-cylinders. When they reach the internal surface of the retina they radiate from their point of entrance over this surface grouped in bundles, and in many places arranged in plexuses. Most of the fibers are centripetal, and are the direct continuations of the axis-cylinder processes of the cells of the ganglionic layer, but a few of them are centrifugal and ramify in the inner plexiform and inner nuclear layers, where they end in enlarged extremities. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nervous_system_fiber_layer[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001619] + * *Definition* = Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve[ZFA]. The retinal nerve fiber layer (nerve fiber layer, stratum opticum, RNFL) is formed by the expansion of the fibers of the optic nerve; it is thickest near the porus opticus, gradually diminishing toward the ora serrata. As the nerve fibers pass through the lamina cribrosa sclerae they lose their medullary sheaths and are continued onward through the choroid and retina as simple axis-cylinders. When they reach the internal surface of the retina they radiate from their point of entrance over this surface grouped in bundles, and in many places arranged in plexuses. Most of the fibers are centripetal, and are the direct continuations of the axis-cylinder processes of the cells of the ganglionic layer, but a few of them are centrifugal and ramify in the inner plexiform and inner nuclear layers, where they end in enlarged extremities. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nervous_system_fiber_layer, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001619 ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -12,11 +12,11 @@ * layer of nerve fibres of retina * retina nerve fiber layer * stratum neurofibrarum (retina) - * stratum neurofibrarum retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58688[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stratum neurofibrarum retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58688, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stratum opticum of retina - * optic fiber layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001169] - * optic fiber layers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002212[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * stratum neurofibrum retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nerve_fiber_layer[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * optic fiber layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001169 ] + * optic fiber layers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002212, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * stratum neurofibrum retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nerve_fiber_layer, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,7 +39,7 @@ * [retinal neural layer](../../UBERON/02/UBERON_0003902.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [retinal neural layer](../../UBERON/02/UBERON_0003902.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [cranial nerve II](../../UBERON/41/UBERON_0000941.md) * [adjacent to](../../RO/20/RO_0002220.md) some [inner limiting layer of retina](../../UBERON/94/UBERON_0001794.md) ## Equivalencies @@ -53,8 +53,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005888 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001893.md b/md/UBERON/93/UBERON_0001893.md index d3e931422a..86586792b9 100644 --- a/md/UBERON/93/UBERON_0001893.md +++ b/md/UBERON/93/UBERON_0001893.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001893 * *Label* = telencephalon - * *Definition* = The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain'. It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1115] + * *Definition* = The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain'. It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1115 ] ## Synonyms - * cerebrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Talk:Cerebrum] - * endbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Swanson:2004] - * supratentorial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Tentorium_cerebelli] - * cell bridges of the ventral striatum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CB] + * cerebrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Talk:Cerebrum ] + * endbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Swanson:2004 ] + * supratentorial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Tentorium_cerebelli ] + * cell bridges of the ventral striatum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CB ] ## Cross-references @@ -35,10 +35,10 @@ * MESH:A08.186.211.730.885 * MIAA:0000421 * NIF_GrossAnatomy:birnlex_1115 - * NeuroNames:31 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1115] + * NeuroNames:31 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1115 ] * SCTID:263353005 * TAO:0000079 - * UMLS:C0039452 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1115] + * UMLS:C0039452 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1115 ] * VHOG:0000283 * Wikipedia:Telencephalon * XAO:0000012 @@ -79,8 +79,9 @@ * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = The cerebrum of birds has evolved along different lines to that of mammals, although they are similarly enlarged, by comparison with reptiles. However, this enlargement is largely due to the basal ganglia, with the other areas remaining relatively primitive in structure. * *[taxon_notes](../../UBPROP/08/UBPROP_0000008.md)* = dolphins are the only species (other than humans) to have cerebra accounting for as much as 2 percent of their body weight. * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0001993.md b/md/UBERON/93/UBERON_0001993.md index 6f29f4d9d7..22366263ff 100644 --- a/md/UBERON/93/UBERON_0001993.md +++ b/md/UBERON/93/UBERON_0001993.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001993 * *Label* = reticular layer of dermis - * *Definition* = The thicker, deeper layer of the dermis, comprised of criss-crossing collagen fibers that form a strong elastic network and also containing blood and lymph vessels, nerves and nerve endings, and hair follicles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0-683-40008-8[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005081] + * *Definition* = The thicker, deeper layer of the dermis, comprised of criss-crossing collagen fibers that form a strong elastic network and also containing blood and lymph vessels, nerves and nerve endings, and hair follicles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0-683-40008-8, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005081 ] ## Synonyms * dermis reticular layer * dermis stratum reticulare * reticular dermis - * stratum reticulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticular_dermis] - * stratum reticulare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Reticular_dermis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stratum reticulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticular_dermis ] + * stratum reticulare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Reticular_dermis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:64778 * MA:0000801 - * UMLS:C0682599 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Reticular_Dermis] - * UMLS:C1514988 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stratum_Reticulare] + * UMLS:C0682599 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Reticular_Dermis ] + * UMLS:C1514988 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stratum_Reticulare ] * Wikipedia:Reticular_dermis * ncithesaurus:Reticular_Dermis * ncithesaurus:Stratum_Reticulare @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002093.md b/md/UBERON/93/UBERON_0002093.md index ea3622b862..8dad95b666 100644 --- a/md/UBERON/93/UBERON_0002093.md +++ b/md/UBERON/93/UBERON_0002093.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002093 * *Label* = spinal dura mater - * *Definition* = A dura mater that is part of a spinal cord [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dura mater that is part of a spinal cord [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * dura mater of neuraxis of spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * dura mater of neuraxis of spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * dura mater of spinal cord * spinal cord dura mater - * spinal cord dura mater of neuraxis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * spinal cord dura mater of neuraxis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -19,7 +19,7 @@ * FMA:71237 * MA:0001132 * SCTID:362302001 - * UMLS:C0228124 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord_Dura_Mater] + * UMLS:C0228124 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord_Dura_Mater ] * VHOG:0000411 * ncithesaurus:Spinal_Cord_Dura_Mater @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outermost and densest membrane of the three mammalian meninges covering the brain and spinal cord. [Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, adapted_from_Dorian_AF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002193.md b/md/UBERON/93/UBERON_0002193.md index 1b26298473..aab2d5a762 100644 --- a/md/UBERON/93/UBERON_0002193.md +++ b/md/UBERON/93/UBERON_0002193.md @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002293.md b/md/UBERON/93/UBERON_0002293.md index 448e5736a1..9a6c44d536 100644 --- a/md/UBERON/93/UBERON_0002293.md +++ b/md/UBERON/93/UBERON_0002293.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002293 * *Label* = costochondral joint - * *Definition* = A bars of hyaline cartilage located between the distal part of a rib and a costal cartilage, connecting the ribs to the sternum . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000920[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costochondral_joint] + * *Definition* = A bars of hyaline cartilage located between the distal part of a rib and a costal cartilage, connecting the ribs to the sternum . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000920, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costochondral_joint ] * *Comment* = Taxon notes: In humans, Joints between costal cartilages of ribs 6-9 are plane synovial joints. Articulation between costal cartilage of rib 9 and rib 10 is fibrous ## Synonyms - * articulatio costochondralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7956[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * chondrocostal synchondrosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7956] - * costochondral junction [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7956[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0000920] - * costochondral synchondrosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7956] - * articulationes costochondrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Costochondral_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * articulatio costochondralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7956, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * chondrocostal synchondrosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7956 ] + * costochondral junction [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7956, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0000920 ] + * costochondral synchondrosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7956 ] + * articulationes costochondrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Costochondral_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001509 * OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA * SCTID:282413008 - * UMLS:C0224683 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Costochondral_Joint] + * UMLS:C0224683 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Costochondral_Joint ] * Wikipedia:Costochondral_joint * ncithesaurus:Costochondral_Joint @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002393.md b/md/UBERON/93/UBERON_0002393.md index 7338ae2888..8a7514bf37 100644 --- a/md/UBERON/93/UBERON_0002393.md +++ b/md/UBERON/93/UBERON_0002393.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002393 * *Label* = pharyngotympanic tube - * *Definition* = Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eustachian_tube] + * *Definition* = Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eustachian_tube ] * *Comment* = Editor notes: we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship ## Synonyms - * auditory tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000255] + * auditory tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000255 ] * internal auditory tube - * tuba auditiva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9705[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuba auditoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9705[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tuba auditiva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9705, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuba auditoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9705, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * eustachian tube - * tuba auditiva; tuba auditoria; tuba auditivea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Eustachian_tube[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuba pharyngotympanica [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tuba auditiva; tuba auditoria; tuba auditivea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Eustachian_tube, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuba pharyngotympanica [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:9705 * GAID:869 * MA:0000255 - * UMLS:C0015183 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Eustachian_Tube] + * UMLS:C0015183 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Eustachian_Tube ] * VHOG:0001145 * Wikipedia:Eustachian_tube * XAO:0000213 @@ -58,8 +58,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The tympanic cavity and auditory tube of an amniote develop from the first embryonic pharyngeal pouch, so they are homologous to the first gill pouch, or spiracle, of a fish. We are uncertain whether this homology strictly applies to the middle ear cavity and auditory tube of lissamphibians, which show certain peculiarities in their development.[uncertain][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002493.md b/md/UBERON/93/UBERON_0002493.md index 6c094f8bf5..7a10878c53 100644 --- a/md/UBERON/93/UBERON_0002493.md +++ b/md/UBERON/93/UBERON_0002493.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002493 * *Label* = uterine artery - * *Definition* = The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_artery] + * *Definition* = The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_artery ] ## Synonyms - * arteria uterina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterine_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria uterina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterine_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002593.md b/md/UBERON/93/UBERON_0002593.md index 5d2166006b..b5e6cecea8 100644 --- a/md/UBERON/93/UBERON_0002593.md +++ b/md/UBERON/93/UBERON_0002593.md @@ -6,17 +6,17 @@ ## Synonyms - * frontal core [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2394] - * gigantopyramidal area 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2394] - * precentral gigantopyramidal field [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:2394] + * frontal core [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2394 ] + * gigantopyramidal area 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2394 ] + * precentral gigantopyramidal field [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:2394 ] ## Cross-references * BAMS:oro * FMA:74887 * NIF_GrossAnatomy:birnlex_1102 - * NeuroNames:2394 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1102] - * UMLS:C0694580 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1102] + * NeuroNames:2394 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1102 ] + * UMLS:C0694580 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1102 ] ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002693.md b/md/UBERON/93/UBERON_0002693.md index 51afeda8c3..7ab4e5d4ee 100644 --- a/md/UBERON/93/UBERON_0002693.md +++ b/md/UBERON/93/UBERON_0002693.md @@ -6,18 +6,18 @@ ## Synonyms - * inferior temporal fissure (crosby) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1422] - * inferior temporal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74518] + * inferior temporal fissure (crosby) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1422 ] + * inferior temporal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74518 ] * inferior temporal sulcus (roberts) * inferior temporal sulcus (szikla) - * inferior temporal sulcus-2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74518] - * lateral occipitotemporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1422] - * occipito-temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74518] - * third temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74518] - * ots [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1422[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lateral occipito -temporal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:lots] - * sulcus occipitotemporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:55[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus temporalis inferior (Roberts) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:55[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior temporal sulcus-2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74518 ] + * lateral occipitotemporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1422 ] + * occipito-temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74518 ] + * third temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74518 ] + * ots [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1422, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lateral occipito -temporal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:lots ] + * sulcus occipitotemporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:55, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus temporalis inferior (Roberts) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:55, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -26,9 +26,9 @@ * BM:Tel-Cx-OTS * FMA:74518 * NIF_GrossAnatomy:birnlex_1422 - * NeuroNames:55 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1422] + * NeuroNames:55 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1422 ] * SCTID:369220009 - * UMLS:C0228245 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1422] + * UMLS:C0228245 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1422 ] ## Subsets @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002793.md b/md/UBERON/93/UBERON_0002793.md index a815f4bfc3..4b34194df6 100644 --- a/md/UBERON/93/UBERON_0002793.md +++ b/md/UBERON/93/UBERON_0002793.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002793 * *Label* = dorsal longitudinal fasciculus of pons - * *Definition* = A dorsal longitudinal fasciculus that is part of a pons. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A dorsal longitudinal fasciculus that is part of a pons. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * dorsal longitudinal fasciculus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:599] - * fasciculus longitudinalis dorsalis (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:599[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal longitudinal fasciculus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:599 ] + * fasciculus longitudinalis dorsalis (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:599, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dlfp * FMA:72492 * NIF_GrossAnatomy:birnlex_1707 - * NeuroNames:599 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1707] - * UMLS:C0262223 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1707] + * NeuroNames:599 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1707 ] + * UMLS:C0262223 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1707 ] ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [dorsal longitudinal fasciculus](../../UBERON/45/UBERON_0003045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pons](../../UBERON/88/UBERON_0000988.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002893.md b/md/UBERON/93/UBERON_0002893.md index 6932a2cd75..9e57135524 100644 --- a/md/UBERON/93/UBERON_0002893.md +++ b/md/UBERON/93/UBERON_0002893.md @@ -7,12 +7,12 @@ ## Synonyms - * lateral olfactory tract nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61865] - * nucleus of the lateral olfactory tract (ganser) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2702] - * nucleus of the lateral olfactory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:242] - * nucleus of the olfactory tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:LOT] - * nucleus of tractus olfactorius lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:242[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus striae olfactoriae lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:242[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lateral olfactory tract nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61865 ] + * nucleus of the lateral olfactory tract (ganser) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2702 ] + * nucleus of the lateral olfactory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:242 ] + * nucleus of the olfactory tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:LOT ] + * nucleus of tractus olfactorius lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:242, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus striae olfactoriae lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:242, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * BM:Tel-NLOT * FMA:61865 * NIF_GrossAnatomy:birnlex_2702 - * NeuroNames:242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2702] - * UMLS:C0175218 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2702] + * NeuroNames:242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2702 ] + * UMLS:C0175218 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2702 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0002993.md b/md/UBERON/93/UBERON_0002993.md index 271f418fe2..7803a6090b 100644 --- a/md/UBERON/93/UBERON_0002993.md +++ b/md/UBERON/93/UBERON_0002993.md @@ -7,13 +7,13 @@ ## Synonyms - * inferior central nucleus (of roller) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72466] - * inferior central nucleus of raphe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72466] - * inferior central tegmental nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72466] - * Inferior colliculus external nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICe] - * granular insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GI] - * inferior colliculus external nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:ICe] - * zonal layer of the superior colliculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:GI] + * inferior central nucleus (of roller) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72466 ] + * inferior central nucleus of raphe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72466 ] + * inferior central tegmental nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72466 ] + * Inferior colliculus external nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICe ] + * granular insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GI ] + * inferior colliculus external nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:ICe ] + * zonal layer of the superior colliculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:GI ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003093.md b/md/UBERON/93/UBERON_0003093.md index a635dc6fef..fedfc71dd4 100644 --- a/md/UBERON/93/UBERON_0003093.md +++ b/md/UBERON/93/UBERON_0003093.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003093 * *Label* = occipital lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -38,8 +38,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of anterior lateral line (TAO:0001470)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003193.md b/md/UBERON/93/UBERON_0003193.md index 30204ea13a..de6a99bf85 100644 --- a/md/UBERON/93/UBERON_0003193.md +++ b/md/UBERON/93/UBERON_0003193.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004744 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000157 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003193 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_0003393.md b/md/UBERON/93/UBERON_0003393.md index 87761d6827..218d95b707 100644 --- a/md/UBERON/93/UBERON_0003393.md +++ b/md/UBERON/93/UBERON_0003393.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003393 * *Label* = mesentery of urinary system - * *Definition* = A mesentery that is part of a urinary system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a urinary system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * excretory system mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of excretory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of renal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of systema urinaria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * renal system mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * systema urinaria mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * urinary system mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * excretory system mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of excretory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of renal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of systema urinaria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * renal system mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * systema urinaria mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * urinary system mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [renal system](../../UBERON/08/UBERON_0001008.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003493.md b/md/UBERON/93/UBERON_0003493.md index 6f948b4ba2..1d09dd4c6c 100644 --- a/md/UBERON/93/UBERON_0003493.md +++ b/md/UBERON/93/UBERON_0003493.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003493 * *Label* = trachea reticular lamina - * *Definition* = A reticular lamina that is part of a trachea [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A reticular lamina that is part of a trachea [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fibroreticular lamina of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fibroreticular lamina of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lamina fibroreticularis of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of cartilaginous trachea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * reticular lamina of windpipe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe fibroreticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe lamina fibroreticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * windpipe reticular lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fibroreticular lamina of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fibroreticular lamina of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lamina fibroreticularis of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of cartilaginous trachea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * reticular lamina of windpipe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe fibroreticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe lamina fibroreticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * windpipe reticular lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trachea](../../UBERON/26/UBERON_0003126.md) and [reticular lamina of epithelium](../../UBERON/67/UBERON_0001967.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003593.md b/md/UBERON/93/UBERON_0003593.md index dd6fc5bd03..d97ba59fff 100644 --- a/md/UBERON/93/UBERON_0003593.md +++ b/md/UBERON/93/UBERON_0003593.md @@ -3,39 +3,39 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003593 * *Label* = thoracic cavity connective tissue - * *Definition* = A portion of connective tissue that is part of a thoracic cavity [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a thoracic cavity [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cavity of chest connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of chest portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of chest textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cavity of thorax textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * chest cavity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pectoral cavity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of cavity of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of cavity of thorax [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of chest cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of pectoral cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of thoracic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic cavity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * thoracic cavity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cavity of chest connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of chest portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of chest textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cavity of thorax textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * chest cavity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pectoral cavity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of cavity of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of cavity of thorax [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of chest cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of pectoral cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of thoracic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic cavity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * thoracic cavity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -51,15 +51,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [located_in](../../RO/25/RO_0001025.md) some [thoracic cavity](../../UBERON/24/UBERON_0002224.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003693.md b/md/UBERON/93/UBERON_0003693.md index 802d9263b5..afdc46702b 100644 --- a/md/UBERON/93/UBERON_0003693.md +++ b/md/UBERON/93/UBERON_0003693.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003693 * *Label* = retroperitoneal space - * *Definition* = anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retroperitoneal_space] + * *Definition* = anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retroperitoneal_space ] ## Synonyms - * retroperitoneum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15080] - * spatium retroperitoneale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Retroperitoneum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * retroperitoneum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15080 ] + * spatium retroperitoneale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Retroperitoneum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:25 * MESH:A01.047.025.750 * SCTID:243983004 - * UMLS:C0035359 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Retroperitoneum] + * UMLS:C0035359 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Retroperitoneum ] * Wikipedia:Retroperitoneal_space * http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray1126.png/200px-Gray1126.png * ncithesaurus:Retroperitoneum @@ -41,8 +41,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = retroperitoneal - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003893.md b/md/UBERON/93/UBERON_0003893.md index 909952661f..57fc2b29cc 100644 --- a/md/UBERON/93/UBERON_0003893.md +++ b/md/UBERON/93/UBERON_0003893.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003893 * *Label* = capsule - * *Definition* = a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Capsule_(anatomy)] + * *Definition* = a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Capsule_(anatomy) ] * *Comment* = see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA). GO has 'capsule' which is a fungal structure, and 'external encapsulating structure' which is restricted to cells ## Synonyms @@ -35,8 +35,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = capsular - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0003993.md b/md/UBERON/93/UBERON_0003993.md index a728f36c38..4becc5c771 100644 --- a/md/UBERON/93/UBERON_0003993.md +++ b/md/UBERON/93/UBERON_0003993.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003993 * *Label* = interventricular foramen of CNS - * *Definition* = the paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009804[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_foramina_(neural_anatomy)] + * *Definition* = the paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009804, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_foramina_(neural_anatomy) ] * *Comment* = AO notes: it is not clear if the FMA class refers to CNS or heart ventricles ## Synonyms - * foramen Monroi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_foramina_(neural_anatomy)] - * foramen interventriculare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_foramina_(neural_anatomy)[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * interventricular foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75351] - * interventricular foramina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_foramina_(neural_anatomy)] + * foramen Monroi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_foramina_(neural_anatomy) ] + * foramen interventriculare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_foramina_(neural_anatomy), [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * interventricular foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75351 ] + * interventricular foramina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_foramina_(neural_anatomy) ] ## Cross-references @@ -20,7 +20,7 @@ * FMA:75351 * NeuroNames:447 * SCTID:279248006 - * UMLS:C0016520 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foramen_of_Monroe] + * UMLS:C0016520 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foramen_of_Monroe ] * Wikipedia:Interventricular_foramina_(neural_anatomy) * ncithesaurus:Foramen_of_Monroe @@ -33,8 +33,8 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [part_of](../../BFO/50/BFO_0000050.md) some [ventricular system of central nervous system](../../UBERON/81/UBERON_0005281.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [telencephalic ventricle](../../UBERON/85/UBERON_0002285.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [third ventricle](../../UBERON/86/UBERON_0002286.md) ## Equivalencies @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004193.md b/md/UBERON/93/UBERON_0004193.md index 1423561e31..7882ec18b0 100644 --- a/md/UBERON/93/UBERON_0004193.md +++ b/md/UBERON/93/UBERON_0004193.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004193 * *Label* = loop of Henle ascending limb thin segment - * *Definition* = A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072021[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thin_ascending_limb_of_loop_of_Henle] + * *Definition* = A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072021, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thin_ascending_limb_of_loop_of_Henle ] * *Comment* = check relationship to distal tubule ## Synonyms * ascending limb thin segment of loop of Henle - * ascending thin limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17720] - * pars ascendens (tubulus attenuatus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17720] - * thin ascending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:28328] + * ascending thin limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17720 ] + * pars ascendens (tubulus attenuatus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17720 ] + * thin ascending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:28328 ] * thin ascending limb of loop of Henle ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004293.md b/md/UBERON/93/UBERON_0004293.md index 6921d08f51..bebb6b7a12 100644 --- a/md/UBERON/93/UBERON_0004293.md +++ b/md/UBERON/93/UBERON_0004293.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004293 * *Label* = parasympathetic nerve - * *Definition* = A nerve that is part of a parasympathetic nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve that is part of a parasympathetic nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve of parasympathetic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve of parasympathetic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve](../../UBERON/21/UBERON_0001021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasympathetic nervous system](../../UBERON/11/UBERON_0000011.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004393.md b/md/UBERON/93/UBERON_0004393.md index 3786322ac4..dacb8eb462 100644 --- a/md/UBERON/93/UBERON_0004393.md +++ b/md/UBERON/93/UBERON_0004393.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004393 * *Label* = epiphysis of third metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone of digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metacarpal 3 epiphysis - * third metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86328] + * third metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86328 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 3](../../UBERON/47/UBERON_0003647.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004493.md b/md/UBERON/93/UBERON_0004493.md index a27d76f55a..d46c80976f 100644 --- a/md/UBERON/93/UBERON_0004493.md +++ b/md/UBERON/93/UBERON_0004493.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004493 * *Label* = cardiac muscle tissue of myocardium - * *Definition* = A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a myocardium [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = Editors note: Note placement of MA class based on parthood relationship ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [myocardium](../../UBERON/49/UBERON_0002349.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004693.md b/md/UBERON/93/UBERON_0004693.md index 642c51dabc..c6b0b44c7e 100644 --- a/md/UBERON/93/UBERON_0004693.md +++ b/md/UBERON/93/UBERON_0004693.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004693 * *Label* = Peyer's patch epithelium - * *Definition* = An epithelium that is part of a Peyer' s patch [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a Peyer' s patch [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * peyer's patch epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000731] + * peyer's patch epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000731 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Peyer's patch](../../UBERON/11/UBERON_0001211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004793.md b/md/UBERON/93/UBERON_0004793.md index 9753b8d2da..926b6cbd46 100644 --- a/md/UBERON/93/UBERON_0004793.md +++ b/md/UBERON/93/UBERON_0004793.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004793 * *Label* = secretion of exocrine pancreas - * *Definition* = A secretion that is part of a exocrine pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A secretion that is part of a exocrine pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * exocrine pancreas secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pancreatic exocrine secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pancreatic_Exocrine_Secretion] - * pars exocrina pancreatis secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of pars exocrina pancreatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * exocrine pancreas secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pancreatic exocrine secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pancreatic_Exocrine_Secretion ] + * pars exocrina pancreatis secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of pars exocrina pancreatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002518 - * UMLS:C1518867 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Exocrine_Secretion] + * UMLS:C1518867 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Exocrine_Secretion ] * ncithesaurus:Pancreatic_Exocrine_Secretion ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [part_of](../../BFO/50/BFO_0000050.md) some [exocrine pancreas](../../UBERON/17/UBERON_0000017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004893.md b/md/UBERON/93/UBERON_0004893.md index fde903381b..b224329328 100644 --- a/md/UBERON/93/UBERON_0004893.md +++ b/md/UBERON/93/UBERON_0004893.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004893 * *Label* = interalveolar septum - * *Definition* = A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012625[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Alveolar_septum] + * *Definition* = A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012625, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Alveolar_septum ] ## Synonyms - * alveolar septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * septum interalveolare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003149] + * alveolar septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * septum interalveolare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003149 ] ## Cross-references * BTO:0003149 * MA:0000421 - * UMLS:C1706784 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Septum] + * UMLS:C1706784 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Septum ] * Wikipedia:Alveolar_septum * ncithesaurus:Alveolar_Septum @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [alveolus of lung](../../UBERON/99/UBERON_0002299.md) and [septum](../../UBERON/37/UBERON_0003037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0004993.md b/md/UBERON/93/UBERON_0004993.md index cd359899a6..d927071574 100644 --- a/md/UBERON/93/UBERON_0004993.md +++ b/md/UBERON/93/UBERON_0004993.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004993 * *Label* = mucosa of sigmoid colon - * *Definition* = A mucosa that is part of a sigmoid colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a sigmoid colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of sigmoid colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of sigmoid colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of sigmoid colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sigmoid colon mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sigmoid colon mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sigmoid colon mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sigmoid colon organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of sigmoid colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of sigmoid colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of sigmoid colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sigmoid colon mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sigmoid colon mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sigmoid colon mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sigmoid colon organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sigmoid colon](../../UBERON/59/UBERON_0001159.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005093.md b/md/UBERON/93/UBERON_0005093.md index c0ec55e9d2..37f2eeb779 100644 --- a/md/UBERON/93/UBERON_0005093.md +++ b/md/UBERON/93/UBERON_0005093.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005093 * *Label* = cement gland - * *Definition* = A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0071570[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000033] + * *Definition* = A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0071570, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000033 ] ## Synonyms - * cementary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002738] + * cementary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002738 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005193.md b/md/UBERON/93/UBERON_0005193.md index 45c5701f52..775ddb193b 100644 --- a/md/UBERON/93/UBERON_0005193.md +++ b/md/UBERON/93/UBERON_0005193.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005193 * *Label* = ethmoidal artery - * *Definition* = One of: anterior or posterior ethmoidal arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ethmoidal_arteries] + * *Definition* = One of: anterior or posterior ethmoidal arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ethmoidal_arteries ] ## Synonyms @@ -13,7 +13,7 @@ * MA:0001949 * SCTID:244222007 - * UMLS:C0226184 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ethmoidal_Artery] + * UMLS:C0226184 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ethmoidal_Artery ] * Wikipedia:Ethmoidal_arteries * ncithesaurus:Ethmoidal_Artery @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectUnionOf( ) + * [anterior ethmoidal artery](../../UBERON/18/UBERON_0012318.md)or[posterior ethmoidal artery](../../UBERON/19/UBERON_0012319.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005293.md b/md/UBERON/93/UBERON_0005293.md index 69f826bcce..81347c1411 100644 --- a/md/UBERON/93/UBERON_0005293.md +++ b/md/UBERON/93/UBERON_0005293.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005293 * *Label* = cerebellum lobe - * *Definition* = A major subdivision of the cerebellum: anterior, posterior and flocculonodular [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Gross_anatomical_divisions] + * *Definition* = A major subdivision of the cerebellum: anterior, posterior and flocculonodular [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Anatomy_of_the_cerebellum#Gross_anatomical_divisions ] ## Synonyms - * cerebellar lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242392] - * lobe of cerebellum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:242392] - * lobe parts of the cerebellar cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1076] - * cerebellar lobes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:CBl] + * cerebellar lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242392 ] + * lobe of cerebellum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:242392 ] + * lobe parts of the cerebellar cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1076 ] + * cerebellar lobes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:CBl ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005393.md b/md/UBERON/93/UBERON_0005393.md index 4bccb3d564..504f16cd37 100644 --- a/md/UBERON/93/UBERON_0005393.md +++ b/md/UBERON/93/UBERON_0005393.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005393 * *Label* = cortical layer IV - * *Definition* = Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] + * *Definition* = Layer of neocortex lying deep to the external pyramidal cell layer defined cytoarchitecturally by the presence of numerous small cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] ## Synonyms - * cerebral cortex, layer 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX4] - * internal granular layer of isocortex [layer iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77811] - * internal granular layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77811] - * internal granule cell layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * lamina granularis interna isocorticis [lamina iv] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77811[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer 4 of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * layer IV of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * neocortex internal granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * neocortex layer 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * neocortex layer IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * neocortical internal granule cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] - * neocortical layer IV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090810] + * cerebral cortex, layer 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX4 ] + * internal granular layer of isocortex [layer iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77811 ] + * internal granular layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77811 ] + * internal granule cell layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * lamina granularis interna isocorticis [lamina iv] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77811, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer 4 of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * layer IV of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * neocortex internal granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * neocortex layer 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * neocortex layer IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * neocortical internal granule cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] + * neocortical layer IV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090810 ] * internal granular layer ## Cross-references @@ -28,7 +28,7 @@ * MA:0000900 * NIF_GrossAnatomy:nlx_anat_090810 * NeuroNames:2449 - * UMLS:C1512872 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Internal_Granular_Layer] + * UMLS:C1512872 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Internal_Granular_Layer ] * ncithesaurus:Internal_Granular_Layer ## Subsets @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = ... * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Relatively undeveloped in some mammals such as the tenrec. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005493.md b/md/UBERON/93/UBERON_0005493.md index d57cd86764..b91ef16972 100644 --- a/md/UBERON/93/UBERON_0005493.md +++ b/md/UBERON/93/UBERON_0005493.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005493 * *Label* = hyoid muscle - * *Definition* = One of a group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. In humans, the muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[WP, generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.answers.com/topic/hyoid-muscles] + * *Definition* = One of a group of muscles used in mastication and swallowing. These muscles are attached to the hyoid bone, which is suspended in the neck and forms the base of the tongue and larynx. In humans, the muscles are divided into suprahyoid (superior) or infrahyoid (inferior) groups relative to the bone[WP, generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.answers.com/topic/hyoid-muscles ] * *Comment* = Editor notes: PMID:19531159 states that facial muscles are hyoid muscles ## Synonyms - * hyoid muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000521] + * hyoid muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000521 ] ## Cross-references @@ -16,7 +16,7 @@ * EHDAA2:0000794 * SCTID:244823009 * TAO:0000521 - * UMLS:C0448345 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hyoid_Muscle] + * UMLS:C0448345 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hyoid_Muscle ] * VHOG:0001494 * ZFA:0000521 * ncithesaurus:Hyoid_Muscle @@ -47,8 +47,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although the zebrafish occupies a rather derived phylogenetic position within actinopterygians and even within teleosts, with respect to the mandibular, hyoid and hypobranchial muscles it seems justified to consider it an appropriate representative of these two groups. Among these muscles, the three with clear homologues in tetrapods and the further three identified in sarcopterygian fish are particularly appropriate for comparisons of results between the actinopterygian zebrafish and the sarcopterygians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005693.md b/md/UBERON/93/UBERON_0005693.md index 37f28699c2..3ae8f10669 100644 --- a/md/UBERON/93/UBERON_0005693.md +++ b/md/UBERON/93/UBERON_0005693.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005693 * *Label* = manual digit 3 mesenchyme - * *Definition* = Mesenchyme that is part of a manual digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a manual digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 3](../../UBERON/23/UBERON_0003623.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005893.md b/md/UBERON/93/UBERON_0005893.md index 097a13f297..45106571e6 100644 --- a/md/UBERON/93/UBERON_0005893.md +++ b/md/UBERON/93/UBERON_0005893.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005893 * *Label* = leg bone - * *Definition* = A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any pes phalanx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any pes phalanx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [leg](../../UBERON/78/UBERON_0000978.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0005993.md b/md/UBERON/93/UBERON_0005993.md index 1dcdd4a467..ad4b47f45d 100644 --- a/md/UBERON/93/UBERON_0005993.md +++ b/md/UBERON/93/UBERON_0005993.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005993 * *Label* = pulmonary valve anulus - * *Definition* = the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010606] + * *Definition* = the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010606 ] ## Synonyms - * anulus of pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9503] - * fibrous ring of pulmonary valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9503] - * pulmonary anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9503] - * pulmonary valvar anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9503] + * anulus of pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9503 ] + * fibrous ring of pulmonary valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9503 ] + * pulmonary anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9503 ] + * pulmonary valvar anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9503 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fibrous ring of heart](../../UBERON/08/UBERON_0006008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pulmonary valve](../../UBERON/46/UBERON_0002146.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0006093.md b/md/UBERON/93/UBERON_0006093.md index 610890dca6..36d87c42c3 100644 --- a/md/UBERON/93/UBERON_0006093.md +++ b/md/UBERON/93/UBERON_0006093.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006093 * *Label* = precuneus cortex - * *Definition* = Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1446] + * *Definition* = Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1446 ] ## Synonyms - * precuneate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61900] - * precuneate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1446] - * precuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1446] - * precuneus cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1446] - * quadrate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61900] - * quadrate lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1446] - * medial area of the superior parietal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:110] - * praecuneus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:110[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * precuneate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61900 ] + * precuneate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1446 ] + * precuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1446 ] + * precuneus cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1446 ] + * quadrate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61900 ] + * quadrate lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1446 ] + * medial area of the superior parietal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:110 ] + * praecuneus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:110, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,9 +22,9 @@ * BAMS:PCun * FMA:61900 * NIF_GrossAnatomy:birnlex_1446 - * NeuroNames:110 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1446] + * NeuroNames:110 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1446 ] * SCTID:279200005 - * UMLS:C0152306 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1446] + * UMLS:C0152306 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1446 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0006293.md b/md/UBERON/93/UBERON_0006293.md index 8eef5e5ddb..19c2ddba23 100644 --- a/md/UBERON/93/UBERON_0006293.md +++ b/md/UBERON/93/UBERON_0006293.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006293 * *Label* = spleen primordium - * *Definition* = A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium[ISBN]. the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0123747295[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011263] + * *Definition* = A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium[ISBN]. the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0123747295, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011263 ] * *Comment* = AO notes: check difference between splenic and spleen in EMAPA; note that in EHDAA2 the class 'spleen' refers to the mesenchyme ## Synonyms - * spleen mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011263] - * splenic mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * splenic primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001904] - * left spleen primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000326] + * spleen mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011263 ] + * splenic mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * splenic primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001904 ] + * left spleen primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000326 ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009750 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0006493.md b/md/UBERON/93/UBERON_0006493.md index 5cdca8959a..bb90f7a8e6 100644 --- a/md/UBERON/93/UBERON_0006493.md +++ b/md/UBERON/93/UBERON_0006493.md @@ -6,16 +6,16 @@ ## Synonyms - * C7 segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71185] - * C7 spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_773] - * seventh cervical spinal cord segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_773] + * C7 segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71185 ] + * C7 spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_773 ] + * seventh cervical spinal cord segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_773 ] ## Cross-references * FMA:71185 * NIF_GrossAnatomy:birnlex_773 * SCTID:278760000 - * UMLS:C0457857 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_773] + * UMLS:C0457857 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_773 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0006693.md b/md/UBERON/93/UBERON_0006693.md index fa869a06e6..ce49f1029a 100644 --- a/md/UBERON/93/UBERON_0006693.md +++ b/md/UBERON/93/UBERON_0006693.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006693 * *Label* = protein-based cuticle - * *Definition* = An example of this is found in Caenorhabditis elegans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007592] + * *Definition* = An example of this is found in Caenorhabditis elegans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007592 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0006793.md b/md/UBERON/93/UBERON_0006793.md index 538055b9f2..4d16b97c5e 100644 --- a/md/UBERON/93/UBERON_0006793.md +++ b/md/UBERON/93/UBERON_0006793.md @@ -6,7 +6,7 @@ ## Synonyms - * superior colliculus, deep layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SCD] + * superior colliculus, deep layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SCD ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0007193.md b/md/UBERON/93/UBERON_0007193.md index 71ce3ef5d5..503b6445b3 100644 --- a/md/UBERON/93/UBERON_0007193.md +++ b/md/UBERON/93/UBERON_0007193.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007193 * *Label* = orbital gyrus - * *Definition* = The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_gyri] + * *Definition* = The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_gyri ] ## Synonyms - * orbital gyri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_gyri[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * gyrus orbitales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_gyri[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * orbital gyri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_gyri, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * gyrus orbitales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_gyri, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0007293.md b/md/UBERON/93/UBERON_0007293.md index 6864645222..903e559a15 100644 --- a/md/UBERON/93/UBERON_0007293.md +++ b/md/UBERON/93/UBERON_0007293.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007293 * *Label* = presumptive rhombomere 6 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 6. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 6. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 6](../../UBERON/19/UBERON_0005519.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0007693.md b/md/UBERON/93/UBERON_0007693.md index b30342af5e..0237c6dd8c 100644 --- a/md/UBERON/93/UBERON_0007693.md +++ b/md/UBERON/93/UBERON_0007693.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007693 * *Label* = caroticotympanic artery - * *Definition* = The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caroticotympanic_arteries] + * *Definition* = The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caroticotympanic_arteries ] ## Synonyms - * arteriae caroticotympanicae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caroticotympanic_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * caroticotympanic branch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caroticotympanic_arteries] - * ramus caroticotympanicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caroticotympanic_arteries[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae caroticotympanicae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caroticotympanic_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * caroticotympanic branch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caroticotympanic_arteries ] + * ramus caroticotympanicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caroticotympanic_arteries, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0007993.md b/md/UBERON/93/UBERON_0007993.md index 7f763b8d62..e7feb074f0 100644 --- a/md/UBERON/93/UBERON_0007993.md +++ b/md/UBERON/93/UBERON_0007993.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0008193.md b/md/UBERON/93/UBERON_0008193.md index 39e2e54faf..40ca7165f8 100644 --- a/md/UBERON/93/UBERON_0008193.md +++ b/md/UBERON/93/UBERON_0008193.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008193 * *Label* = pneumatized bone - * *Definition* = a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skeletal_pneumaticity[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=11303] + * *Definition* = a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skeletal_pneumaticity, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=11303 ] * *Comment* = editor note: subclasses of this should be checked for taxonomic consistency ## Synonyms - * os pneumaticum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7478] - * pneumatic bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7478] + * os pneumaticum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7478 ] + * pneumatic bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7478 ] * hollow bone ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [has_part](../../BFO/51/BFO_0000051.md) some [pneumatic cavity of bone](../../UBERON/28/UBERON_0010528.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0008293.md b/md/UBERON/93/UBERON_0008293.md index 85f264090a..7e1e0e254b 100644 --- a/md/UBERON/93/UBERON_0008293.md +++ b/md/UBERON/93/UBERON_0008293.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008293 * *Label* = filoplume feather - * *Definition* = A hairlike feather that grows alongside the down feathers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Filoplume#Classification] + * *Definition* = A hairlike feather that grows alongside the down feathers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Filoplume#Classification ] * *Comment* = Taxon notes: In some passerines, filoplumes arise exposed beyond the contour feathers on the neck ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0008593.md b/md/UBERON/93/UBERON_0008593.md index 109e665cb3..a385a9c12a 100644 --- a/md/UBERON/93/UBERON_0008593.md +++ b/md/UBERON/93/UBERON_0008593.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008593 * *Label* = zygomaticus major muscle - * *Definition* = The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] + * *Definition* = The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] ## Synonyms - * musculus zygomaticus major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * zygomatic major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] - * zygomatic major muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] - * zygomatic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] - * zygomaticcus major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] - * zygomaticus major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_major_muscle] + * musculus zygomaticus major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * zygomatic major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] + * zygomatic major muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] + * zygomatic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] + * zygomaticcus major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] + * zygomaticus major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_major_muscle ] ## Cross-references * FMA:46810 * SCTID:244739005 * SCTID:244740007 - * UMLS:C0224115 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zygomaticus_Major] + * UMLS:C0224115 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zygomaticus_Major ] * Wikipedia:Zygomaticus_major_muscle * http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png * ncithesaurus:Zygomaticus_Major @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0008993.md b/md/UBERON/93/UBERON_0008993.md index 3a0fad3770..38d48ee51e 100644 --- a/md/UBERON/93/UBERON_0008993.md +++ b/md/UBERON/93/UBERON_0008993.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008993 * *Label* = habenular nucleus - * *Definition* = The gray matter of the habenula, composed of a small-celled medial and a larger-celled lateral habenular nucleus; both nuclei receive fibres from basal forebrain regions (septum, basal nucleus, lateral preoptic nucleus); the lateral habenular nucleus receives an additional projection from the medial segment of the globus pallidus. Both nuclei project by way of the retroflex fasciculus to the interpeduncular nucleus and a medial zone of the midbrain tegmentum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003685] + * *Definition* = The gray matter of the habenula, composed of a small-celled medial and a larger-celled lateral habenular nucleus; both nuclei receive fibres from basal forebrain regions (septum, basal nucleus, lateral preoptic nucleus); the lateral habenular nucleus receives an additional projection from the medial segment of the globus pallidus. Both nuclei project by way of the retroflex fasciculus to the interpeduncular nucleus and a medial zone of the midbrain tegmentum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003685 ] ## Synonyms - * ganglion habenulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003685] - * nucleus habenulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003685] + * ganglion habenulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003685 ] + * nucleus habenulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003685 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009093.md b/md/UBERON/93/UBERON_0009093.md index ceb7fff052..a56098e0a8 100644 --- a/md/UBERON/93/UBERON_0009093.md +++ b/md/UBERON/93/UBERON_0009093.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009193.md b/md/UBERON/93/UBERON_0009193.md index 71757b045f..47df339782 100644 --- a/md/UBERON/93/UBERON_0009193.md +++ b/md/UBERON/93/UBERON_0009193.md @@ -6,7 +6,7 @@ ## Synonyms - * sphenoid bone cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001888] + * sphenoid bone cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001888 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [sphenoid endochondral element](../../UBERON/60/UBERON_0015060.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009293.md b/md/UBERON/93/UBERON_0009293.md index 609a652ec4..4873ba47c8 100644 --- a/md/UBERON/93/UBERON_0009293.md +++ b/md/UBERON/93/UBERON_0009293.md @@ -6,7 +6,7 @@ ## Synonyms - * frontal process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001323] + * frontal process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001323 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009593.md b/md/UBERON/93/UBERON_0009593.md index 8a240af526..d34dd0dbb0 100644 --- a/md/UBERON/93/UBERON_0009593.md +++ b/md/UBERON/93/UBERON_0009593.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009593 * *Label* = mesenchyme of interdigital region between pedal digits 4 and 5 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between pedal digits 4 and 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * interdigital region between toes 4 and 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000867] + * interdigital region between toes 4 and 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000867 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between pedal digits 4 and 5](../../UBERON/47/UBERON_0006047.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009893.md b/md/UBERON/93/UBERON_0009893.md index 5d023cdd17..9f8fb09ba7 100644 --- a/md/UBERON/93/UBERON_0009893.md +++ b/md/UBERON/93/UBERON_0009893.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0009993.md b/md/UBERON/93/UBERON_0009993.md index 2b1b7c897d..65b0955ab6 100644 --- a/md/UBERON/93/UBERON_0009993.md +++ b/md/UBERON/93/UBERON_0009993.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009993 * *Label* = primary chorionic villus - * *Definition* = A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] + * *Definition* = A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm ] ## Synonyms ## Cross-references - * UMLS:C1514421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primary_Chorionic_Villus] + * UMLS:C1514421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primary_Chorionic_Villus ] * ncithesaurus:Primary_Chorionic_Villus ## Subsets @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010193.md b/md/UBERON/93/UBERON_0010193.md index 340a447055..6728113ce6 100644 --- a/md/UBERON/93/UBERON_0010193.md +++ b/md/UBERON/93/UBERON_0010193.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010193 * *Label* = renal portal vein - * *Definition* = A portal vein that empties into capillaries within the kidneys. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A portal vein that empties into capillaries within the kidneys. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Function notes: function not well understood. [ISBN10:0073040584] ## Synonyms - * renal portal veins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000577[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * renal portal veins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000577, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010293.md b/md/UBERON/93/UBERON_0010293.md index 0e63954e53..e51544584c 100644 --- a/md/UBERON/93/UBERON_0010293.md +++ b/md/UBERON/93/UBERON_0010293.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010293 * *Label* = suprachoroid lamina - * *Definition* = On the external surface of the sclera is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellaebeach lamella consisting of a net-work of fine elastic fibers among which are branched pigment cells. The spaces between the lamellC& are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] + * *Definition* = On the external surface of the sclera is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellaebeach lamella consisting of a net-work of fine elastic fibers among which are branched pigment cells. The spaces between the lamellC& are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] ## Synonyms - * lamina fusca of sclera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58368] - * lamina fusca sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * suprachoroid lamina of sclera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58368] - * fusca sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] - * lamina fusca sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] - * lamina fusca scletae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] - * lamina suprachorioidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina suprachorioidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] - * lamina suprachoroidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Suprachoroid_lamina] + * lamina fusca of sclera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58368 ] + * lamina fusca sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * suprachoroid lamina of sclera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58368 ] + * fusca sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] + * lamina fusca sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] + * lamina fusca scletae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] + * lamina suprachorioidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] + * lamina suprachorioidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina suprachoroidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Suprachoroid_lamina ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010393.md b/md/UBERON/93/UBERON_0010393.md index 4d074a98a4..8f63766f8f 100644 --- a/md/UBERON/93/UBERON_0010393.md +++ b/md/UBERON/93/UBERON_0010393.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [T cell](../../CL/84/CL_0000084.md) and [lymphocyte domain](../../UBERON/94/UBERON_0010394.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010693.md b/md/UBERON/93/UBERON_0010693.md index 09770aba09..4bad686af8 100644 --- a/md/UBERON/93/UBERON_0010693.md +++ b/md/UBERON/93/UBERON_0010693.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010693 * *Label* = pedal digit 1 epithelium - * *Definition* = An epithelium that is part of a pedal digit 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a pedal digit 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 1 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 1 epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 1 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 1 epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 1](../../UBERON/31/UBERON_0003631.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010893.md b/md/UBERON/93/UBERON_0010893.md index ceb7b301f2..b3d8f0b142 100644 --- a/md/UBERON/93/UBERON_0010893.md +++ b/md/UBERON/93/UBERON_0010893.md @@ -8,7 +8,7 @@ * median anterior naris * median nostril - * nasohypophysial opening [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/Hyperoartia] + * nasohypophysial opening [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/Hyperoartia ] ## Cross-references @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [external naris](../../UBERON/28/UBERON_0005928.md) and [intersects_midsagittal_plane_of](../../BSPO/01/BSPO_0005001.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7762 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0012123 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0010993.md b/md/UBERON/93/UBERON_0010993.md index 31c915c2de..678fc96af2 100644 --- a/md/UBERON/93/UBERON_0010993.md +++ b/md/UBERON/93/UBERON_0010993.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010993 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011093.md b/md/UBERON/93/UBERON_0011093.md index 749e13dee4..2a0e6ef8b1 100644 --- a/md/UBERON/93/UBERON_0011093.md +++ b/md/UBERON/93/UBERON_0011093.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011093 * *Label* = left pelvic girdle region - * *Definition* = A pelvic girdle region that is in the left side of a multi-cellular organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pelvic girdle region that is in the left side of a multi-cellular organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16583[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * left pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16583, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) and [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011193.md b/md/UBERON/93/UBERON_0011193.md index b99aaf58c4..073bafeef0 100644 --- a/md/UBERON/93/UBERON_0011193.md +++ b/md/UBERON/93/UBERON_0011193.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011193 * *Label* = inferior ophthalmic vein - * *Definition* = The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ophthalmic_vein] + * *Definition* = The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ophthalmic_vein ] ## Synonyms - * inferior ophthalmic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_ophthalmic_vein] + * inferior ophthalmic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_ophthalmic_vein ] * inferior opthalmic vein ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011593.md b/md/UBERON/93/UBERON_0011593.md index 730fb889f6..0e4f8ba19f 100644 --- a/md/UBERON/93/UBERON_0011593.md +++ b/md/UBERON/93/UBERON_0011593.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011593 * *Label* = maxillary tooth - * *Definition* = Tooth that is attached to a maxilla[TAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001627] + * *Definition* = Tooth that is attached to a maxilla[TAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001627 ] ## Synonyms - * maxillary teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000287[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * maxillary teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000287, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [maxilla](../../UBERON/97/UBERON_0002397.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tooth that is attached to the maxilla.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011693.md b/md/UBERON/93/UBERON_0011693.md index e7f1ac0fba..3d5a0af6b4 100644 --- a/md/UBERON/93/UBERON_0011693.md +++ b/md/UBERON/93/UBERON_0011693.md @@ -6,7 +6,7 @@ ## Synonyms - * extraembryonic umbilical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001157] + * extraembryonic umbilical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001157 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011793.md b/md/UBERON/93/UBERON_0011793.md index f57a71d1fc..474326b5c5 100644 --- a/md/UBERON/93/UBERON_0011793.md +++ b/md/UBERON/93/UBERON_0011793.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011793 * *Label* = flight feather - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather ] ## Synonyms - * contour feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://people.eku.edu/ritchisong/feather_evolution.htm] + * contour feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://people.eku.edu/ritchisong/feather_evolution.htm ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0011893.md b/md/UBERON/93/UBERON_0011893.md index ec3b11caa4..aa806c7f4e 100644 --- a/md/UBERON/93/UBERON_0011893.md +++ b/md/UBERON/93/UBERON_0011893.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011893 * *Label* = endoneurial fluid - * *Definition* = Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:llw2[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0003633] + * *Definition* = Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:llw2, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0003633 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [endoneurium](../../UBERON/23/UBERON_0000123.md) and [portion of organism substance](../../UBERON/63/UBERON_0000463.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011893 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0012193.md b/md/UBERON/93/UBERON_0012193.md index 396ea1a855..e166848129 100644 --- a/md/UBERON/93/UBERON_0012193.md +++ b/md/UBERON/93/UBERON_0012193.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012193 * *Label* = phrenic vein - * *Definition* = The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Phrenic_Vein] + * *Definition* = The veins that run parallel to the phrenic arteries which include the two superior and two inferior phrenic veins. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Phrenic_Vein ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0002194 - * UMLS:C1709532 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Phrenic_Vein] + * UMLS:C1709532 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Phrenic_Vein ] * ncithesaurus:Phrenic_Vein ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [drains](../../ns/core#drains.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0012293.md b/md/UBERON/93/UBERON_0012293.md index 078f2060de..1f9c2222d2 100644 --- a/md/UBERON/93/UBERON_0012293.md +++ b/md/UBERON/93/UBERON_0012293.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012293 * *Label* = anal fold - * *Definition* = a slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/anal+fold] + * *Definition* = a slight elevation flanking the cloacal membrane and derived from a cloacal fold; anal folds form the border of the anus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/anal+fold ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012293 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0013193.md b/md/UBERON/93/UBERON_0013193.md index 5d8b90d031..e38f2da636 100644 --- a/md/UBERON/93/UBERON_0013193.md +++ b/md/UBERON/93/UBERON_0013193.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013193 * *Label* = parakeratinized epithelium - * *Definition* = An epithelium that is characterized by incomplete keratinization of the cells in the stratum corneum. The cells are flattened and composed primarily of packed tonofilaments. However, the cells may retain remnants of nuclei and other organelles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] + * *Definition* = An epithelium that is characterized by incomplete keratinization of the cells in the stratum corneum. The cells are flattened and composed primarily of packed tonofilaments. However, the cells may retain remnants of nuclei and other organelles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html ] * *Comment* = found in oral epithelium ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013193 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0013493.md b/md/UBERON/93/UBERON_0013493.md index 5cd36f889a..5b00339a42 100644 --- a/md/UBERON/93/UBERON_0013493.md +++ b/md/UBERON/93/UBERON_0013493.md @@ -6,8 +6,8 @@ ## Synonyms - * endo-abdominopelvic fascia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19841] - * fascia of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19841] + * endo-abdominopelvic fascia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19841 ] + * fascia of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19841 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fascia](../../UBERON/82/UBERON_0008982.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013493 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0013593.md b/md/UBERON/93/UBERON_0013593.md index 6304889d86..3fdc6cc1d3 100644 --- a/md/UBERON/93/UBERON_0013593.md +++ b/md/UBERON/93/UBERON_0013593.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0013693.md b/md/UBERON/93/UBERON_0013693.md index 98a34dd691..30112ab571 100644 --- a/md/UBERON/93/UBERON_0013693.md +++ b/md/UBERON/93/UBERON_0013693.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013693 * *Label* = cerebral cortex neuropil - * *Definition* = A neuropil that is part of a cerebral cortex [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A neuropil that is part of a cerebral cortex [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neuropil of cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neuropil of cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [neuropil](../../UBERON/06/UBERON_0002606.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebral cortex](../../UBERON/56/UBERON_0000956.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0014393.md b/md/UBERON/93/UBERON_0014393.md index f6b8d5283b..adc55640ce 100644 --- a/md/UBERON/93/UBERON_0014393.md +++ b/md/UBERON/93/UBERON_0014393.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014393 * *Label* = sweat of axilla - * *Definition* = Sweat that is produced by the glands of the axilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Sweat that is produced by the glands of the axilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] ## Synonyms - * axillary sweat [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63085] + * axillary sweat [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63085 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [produced_by](../../RO/01/RO_0003001.md) some [axilla](../../UBERON/72/UBERON_0009472.md) and [sweat](../../UBERON/89/UBERON_0001089.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014393 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0014593.md b/md/UBERON/93/UBERON_0014593.md index 29b92b38e2..6c43ae1541 100644 --- a/md/UBERON/93/UBERON_0014593.md +++ b/md/UBERON/93/UBERON_0014593.md @@ -6,9 +6,9 @@ ## Synonyms - * tuberomammillary nucleus dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1290[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * TMd [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1290[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * tuberomammillary nucleus, dorsal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:TMd] + * tuberomammillary nucleus dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1290, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * TMd [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1290, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * tuberomammillary nucleus, dorsal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:TMd ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014593 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0014693.md b/md/UBERON/93/UBERON_0014693.md index de1d1083ed..51f5e37af0 100644 --- a/md/UBERON/93/UBERON_0014693.md +++ b/md/UBERON/93/UBERON_0014693.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014693 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0014793.md b/md/UBERON/93/UBERON_0014793.md index fa10920c03..7b06383c62 100644 --- a/md/UBERON/93/UBERON_0014793.md +++ b/md/UBERON/93/UBERON_0014793.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014793 * *Label* = musculature of pectoral complex - * *Definition* = Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Any collection of muscles that is part of a pectoral complex. The pectoral complex comprises the pectoral girdle and the associated limb or fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscles of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71296] - * musculature of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71296] - * musculi membri superioris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * set of muscles of upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71296] - * upper limb musculature [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71296] + * muscles of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71296 ] + * musculature of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71296 ] + * musculi membri superioris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * set of muscles of upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71296 ] + * upper limb musculature [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71296 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [musculature](../../UBERON/15/UBERON_0001015.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014793 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_0015093.md b/md/UBERON/93/UBERON_0015093.md index 2a8883a490..e714ba5af1 100644 --- a/md/UBERON/93/UBERON_0015093.md +++ b/md/UBERON/93/UBERON_0015093.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015093 + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000093.md b/md/UBERON/93/UBERON_2000093.md index 5254c38d15..425ec19cbc 100644 --- a/md/UBERON/93/UBERON_2000093.md +++ b/md/UBERON/93/UBERON_2000093.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000093 * *Label* = obsolete blastomere - * *Definition* = A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Term already present in CL. For the subclasses, see http://purl.obolibrary.org/obo/cl/tracker/18 ## Synonyms - * blastomeres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000093[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * blastomeres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000093, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -31,8 +31,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000353 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_2000193.md b/md/UBERON/93/UBERON_2000193.md index 84a0a5822f..1f2deb1f57 100644 --- a/md/UBERON/93/UBERON_2000193.md +++ b/md/UBERON/93/UBERON_2000193.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000293.md b/md/UBERON/93/UBERON_2000293.md index 72831c2a31..5de866389d 100644 --- a/md/UBERON/93/UBERON_2000293.md +++ b/md/UBERON/93/UBERON_2000293.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000493.md b/md/UBERON/93/UBERON_2000493.md index e6c2380edb..5dea3428df 100644 --- a/md/UBERON/93/UBERON_2000493.md +++ b/md/UBERON/93/UBERON_2000493.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000593.md b/md/UBERON/93/UBERON_2000593.md index 7a218afe34..297ab9f0e5 100644 --- a/md/UBERON/93/UBERON_2000593.md +++ b/md/UBERON/93/UBERON_2000593.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000693.md b/md/UBERON/93/UBERON_2000693.md index 3c3277e48f..8f7d327bc2 100644 --- a/md/UBERON/93/UBERON_2000693.md +++ b/md/UBERON/93/UBERON_2000693.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2000793.md b/md/UBERON/93/UBERON_2000793.md index 3786372dd9..a7936a8d73 100644 --- a/md/UBERON/93/UBERON_2000793.md +++ b/md/UBERON/93/UBERON_2000793.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 19 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000793[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 19 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000793, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_2000993.md b/md/UBERON/93/UBERON_2000993.md index d510f0038f..03a1079ca1 100644 --- a/md/UBERON/93/UBERON_2000993.md +++ b/md/UBERON/93/UBERON_2000993.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001093.md b/md/UBERON/93/UBERON_2001093.md index 4ea01ab79d..4920a4e4fd 100644 --- a/md/UBERON/93/UBERON_2001093.md +++ b/md/UBERON/93/UBERON_2001093.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001093 * *Label* = obsolete unspecified - * *Definition* = Annotation with this anatomy term indicates that a structure was not specified by the author. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Annotation with this anatomy term indicates that a structure was not specified by the author. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_2001193.md b/md/UBERON/93/UBERON_2001193.md index deef142a4b..d5ea16bfa8 100644 --- a/md/UBERON/93/UBERON_2001193.md +++ b/md/UBERON/93/UBERON_2001193.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001293.md b/md/UBERON/93/UBERON_2001293.md index 5145f87eac..d53bfe221a 100644 --- a/md/UBERON/93/UBERON_2001293.md +++ b/md/UBERON/93/UBERON_2001293.md @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001393.md b/md/UBERON/93/UBERON_2001393.md index 17bf01a65e..9c19dcff0e 100644 --- a/md/UBERON/93/UBERON_2001393.md +++ b/md/UBERON/93/UBERON_2001393.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001393 * *Label* = parapophysis 2 - * *Definition* = Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * basipophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001393] - * lateral process 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001393] + * basipophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001393 ] + * lateral process 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001393 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001593.md b/md/UBERON/93/UBERON_2001593.md index 9a5dc42a1d..33cd3776fc 100644 --- a/md/UBERON/93/UBERON_2001593.md +++ b/md/UBERON/93/UBERON_2001593.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001593 * *Label* = caudal fin upper lobe - * *Definition* = Surface structure that is the dorsal portion of the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is the dorsal portion of the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * caudal fin dorsal lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001593] + * caudal fin dorsal lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001593 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001693.md b/md/UBERON/93/UBERON_2001693.md index d11ce8c978..b32931be16 100644 --- a/md/UBERON/93/UBERON_2001693.md +++ b/md/UBERON/93/UBERON_2001693.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001693 * *Label* = protractor operculi - * *Definition* = Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Occurs in most members of the Trichomycteridae, except in basal Copionodontinae and Trichogeninae (de Pinna, 1992). ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001793.md b/md/UBERON/93/UBERON_2001793.md index ed13ec30d8..8f0767cf6b 100644 --- a/md/UBERON/93/UBERON_2001793.md +++ b/md/UBERON/93/UBERON_2001793.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001793 * *Label* = pharyngobranchial 4 bone uncinate process - * *Definition* = Bony projection that is part of the pharyngobranchial 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Bony projection that is part of the pharyngobranchial 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * infrapharyngobranchial 4 bone uncinate process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001793] + * infrapharyngobranchial 4 bone uncinate process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001793 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001893.md b/md/UBERON/93/UBERON_2001893.md index 4e02d0b4bd..d0e6438c55 100644 --- a/md/UBERON/93/UBERON_2001893.md +++ b/md/UBERON/93/UBERON_2001893.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001893 * *Label* = hypobranchial element - * *Definition* = Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2001993.md b/md/UBERON/93/UBERON_2001993.md index a20a1c9cc4..dfe148b45d 100644 --- a/md/UBERON/93/UBERON_2001993.md +++ b/md/UBERON/93/UBERON_2001993.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001993 * *Label* = branched pectoral fin ray - * *Definition* = Pectoral fin lepidotrichium that is distally branched and segmented. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pectoral fin lepidotrichium that is distally branched and segmented. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * pectoral fin branched ray [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001993] + * pectoral fin branched ray [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001993 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2002193.md b/md/UBERON/93/UBERON_2002193.md index 8f79ce3179..8c70464047 100644 --- a/md/UBERON/93/UBERON_2002193.md +++ b/md/UBERON/93/UBERON_2002193.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002193 * *Label* = dorsolateral septum - * *Definition* = Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-961014-383] + * *Definition* = Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-961014-383 ] ## Synonyms - * dorsal bar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002193] + * dorsal bar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002193 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2002293.md b/md/UBERON/93/UBERON_2002293.md index 624b26e6fd..9ad19b9e0a 100644 --- a/md/UBERON/93/UBERON_2002293.md +++ b/md/UBERON/93/UBERON_2002293.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002293 * *Label* = hypaxial basal fulcrum - * *Definition* = Basal fulcrum that is positioned at the anteroventral margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Basal fulcrum that is positioned at the anteroventral margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * hypaxial basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002293[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * ventral basal fulcra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002293[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * ventral basal fulcrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002293] + * hypaxial basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002293, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * ventral basal fulcra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002293, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * ventral basal fulcrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002293 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2005093.md b/md/UBERON/93/UBERON_2005093.md index e8c27841c6..f40cb3003f 100644 --- a/md/UBERON/93/UBERON_2005093.md +++ b/md/UBERON/93/UBERON_2005093.md @@ -6,7 +6,7 @@ ## Synonyms - * NV [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005093] + * NV [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005093 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_2005193.md b/md/UBERON/93/UBERON_2005193.md index 37742af4cd..64157c103a 100644 --- a/md/UBERON/93/UBERON_2005193.md +++ b/md/UBERON/93/UBERON_2005193.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral intermediate 2 rostral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005193] + * rostral intermediate 2 rostral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005193 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_3000193.md b/md/UBERON/93/UBERON_3000193.md index 908b3e54c2..82b1d5fcb8 100644 --- a/md/UBERON/93/UBERON_3000193.md +++ b/md/UBERON/93/UBERON_3000193.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3000393.md b/md/UBERON/93/UBERON_3000393.md index cbc5653916..1f36f3a523 100644 --- a/md/UBERON/93/UBERON_3000393.md +++ b/md/UBERON/93/UBERON_3000393.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3000493.md b/md/UBERON/93/UBERON_3000493.md index fb939617b6..580923efb9 100644 --- a/md/UBERON/93/UBERON_3000493.md +++ b/md/UBERON/93/UBERON_3000493.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3000793.md b/md/UBERON/93/UBERON_3000793.md index 9b8f5ded7f..9355b43347 100644 --- a/md/UBERON/93/UBERON_3000793.md +++ b/md/UBERON/93/UBERON_3000793.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000793 * *Label* = anomocoelous - * *Definition* = Stegochordal slightly biconcave or flat terminally vertebral centrum. Each intervertebral cartilage is subdivided anteriorly and posteriorly, producing a free intervertebral element between adjacent vertebrae. This element subsequently ossifies and remains free. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Stegochordal slightly biconcave or flat terminally vertebral centrum. Each intervertebral cartilage is subdivided anteriorly and posteriorly, producing a free intervertebral element between adjacent vertebrae. This element subsequently ossifies and remains free. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3000993.md b/md/UBERON/93/UBERON_3000993.md index 924ea7c655..1b30809003 100644 --- a/md/UBERON/93/UBERON_3000993.md +++ b/md/UBERON/93/UBERON_3000993.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3010093.md b/md/UBERON/93/UBERON_3010093.md index 347bed124d..1d14afb411 100644 --- a/md/UBERON/93/UBERON_3010093.md +++ b/md/UBERON/93/UBERON_3010093.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010093 * *Label* = villosities - * *Definition* = Small hair or nipple like projection on the integument. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + R. C. Stebbins 1951] + * *Definition* = Small hair or nipple like projection on the integument. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = R. C. Stebbins 1951 ] ## Synonyms @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3010193.md b/md/UBERON/93/UBERON_3010193.md index bac11d519c..030e03be7b 100644 --- a/md/UBERON/93/UBERON_3010193.md +++ b/md/UBERON/93/UBERON_3010193.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3010293.md b/md/UBERON/93/UBERON_3010293.md index ed65b8f8df..1218482012 100644 --- a/md/UBERON/93/UBERON_3010293.md +++ b/md/UBERON/93/UBERON_3010293.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010293 * *Label* = obsolete primordial germ cell - * *Definition* = Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:0815318960] + * *Definition* = Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:0815318960 ] ## Synonyms - * PGC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010293] - * primitive germ cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010293] + * PGC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010293 ] + * primitive germ cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010293 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000670 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_3010393.md b/md/UBERON/93/UBERON_3010393.md index 13911abf93..98b8f194ab 100644 --- a/md/UBERON/93/UBERON_3010393.md +++ b/md/UBERON/93/UBERON_3010393.md @@ -7,7 +7,7 @@ ## Synonyms - * DT1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010393] + * DT1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010393 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3010593.md b/md/UBERON/93/UBERON_3010593.md index 00aa0a6ab4..5cb750fc8f 100644 --- a/md/UBERON/93/UBERON_3010593.md +++ b/md/UBERON/93/UBERON_3010593.md @@ -27,8 +27,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000574 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/93/UBERON_3010693.md b/md/UBERON/93/UBERON_3010693.md index d974a81238..782fb9a89d 100644 --- a/md/UBERON/93/UBERON_3010693.md +++ b/md/UBERON/93/UBERON_3010693.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010693 * *Label* = ramus posterior profundus of V3 - * *Definition* = In the adult anuran, this innervates the muscles levator mandibulare internus and longus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = In the adult anuran, this innervates the muscles levator mandibulare internus and longus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_3010793.md b/md/UBERON/93/UBERON_3010793.md index e7873074de..4d7b3be360 100644 --- a/md/UBERON/93/UBERON_3010793.md +++ b/md/UBERON/93/UBERON_3010793.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010793 * *Label* = m. ypsiloideus anterior - * *Definition* = Hypaxial muscle in which contraction elevates the ypsiloid cartilage; originates from the anterior edge of the lateral process of the ypsiloid cartilage and insert on the anteriorly adjacent inscription. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Hypaxial muscle in which contraction elevates the ypsiloid cartilage; originates from the anterior edge of the lateral process of the ypsiloid cartilage and insert on the anteriorly adjacent inscription. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/93/UBERON_4200093.md b/md/UBERON/93/UBERON_4200093.md index 0ea004473f..a09779a3da 100644 --- a/md/UBERON/93/UBERON_4200093.md +++ b/md/UBERON/93/UBERON_4200093.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0000094.md b/md/UBERON/94/UBERON_0000094.md index 88aa3e209e..d84895ac04 100644 --- a/md/UBERON/94/UBERON_0000094.md +++ b/md/UBERON/94/UBERON_0000094.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000094 * *Label* = membrane organ - * *Definition* = Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7145] + * *Definition* = Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7145 ] ## Synonyms @@ -30,8 +30,9 @@ * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-07-30T05:19:13Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0000994.md b/md/UBERON/94/UBERON_0000994.md index 3b82b902a0..1b2d49f316 100644 --- a/md/UBERON/94/UBERON_0000994.md +++ b/md/UBERON/94/UBERON_0000994.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000994 * *Label* = spermathecum - * *Definition* = an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spermatheca] + * *Definition* = an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spermatheca ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * receptaculum seminis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001273] + * receptaculum seminis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001273 ] * seminal receptacle - * spermatheca [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * spermathecae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * spermatheca [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * spermathecae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001094.md b/md/UBERON/94/UBERON_0001094.md index 192244ee81..e50e8b4990 100644 --- a/md/UBERON/94/UBERON_0001094.md +++ b/md/UBERON/94/UBERON_0001094.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001094 * *Label* = sacral vertebra - * *Definition* = A vertebra that is part of a sacral region of vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vertebra that is part of a sacral region of vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -18,7 +18,7 @@ * NeuroNames:1706 * OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA * SCTID:361773005 - * UMLS:C1261045 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sacral_Vertebra] + * UMLS:C1261045 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sacral_Vertebra ] * XAO:0003078 * galen:SacralVertebra * ncithesaurus:Sacral_Vertebra @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sacral region of vertebral column](../../UBERON/75/UBERON_0006075.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001194.md b/md/UBERON/94/UBERON_0001194.md index 47b2ca2b71..a9253160e0 100644 --- a/md/UBERON/94/UBERON_0001194.md +++ b/md/UBERON/94/UBERON_0001194.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001194 * *Label* = splenic artery - * *Definition* = In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_artery] + * *Definition* = In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria splenica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lienal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001991] - * arteria lienalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Splenic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria splenica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lienal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001991 ] + * arteria lienalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Splenic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.814 * OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA * SCTID:244266009 - * UMLS:C0037996 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Artery] + * UMLS:C0037996 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Artery ] * Wikipedia:Splenic_artery * galen:SplenicArtery * http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png @@ -40,15 +40,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [supplies](../../FMA/03/FMA_86003.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001294.md b/md/UBERON/94/UBERON_0001294.md index 57ddf6b70d..139c5dd45b 100644 --- a/md/UBERON/94/UBERON_0001294.md +++ b/md/UBERON/94/UBERON_0001294.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001294 * *Label* = inner medulla of kidney - * *Definition* = Innermost region of the mammalian kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072053] + * *Definition* = Innermost region of the mammalian kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072053 ] * *Comment* = Taxon notes: unique to mammals[GO:0072053] ## Synonyms @@ -11,10 +11,10 @@ * inner renal medulla * inner zone of medulla of kidney * inner zone of renal medulla - * renal inner medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001745] + * renal inner medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001745 ] * set of inner region of renal pyramids - * zona interna (medullaris renalis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17734[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * kidney inner medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001745] + * zona interna (medullaris renalis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17734, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * kidney inner medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001745 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001394.md b/md/UBERON/94/UBERON_0001394.md index 808991bcac..598e713488 100644 --- a/md/UBERON/94/UBERON_0001394.md +++ b/md/UBERON/94/UBERON_0001394.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001394 * *Label* = axillary artery - * *Definition* = In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_artery] + * *Definition* = In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * axillary part of subclavian artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22654] + * axillary part of subclavian artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22654 ] * axillary part of trunk of subclavian artery - * arteria axillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria axillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.085 * OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA * SCTID:181321001 - * UMLS:C0004455 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axillary_Artery] + * UMLS:C0004455 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axillary_Artery ] * Wikipedia:Axillary_artery * galen:AxillaryArtery * http://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001494.md b/md/UBERON/94/UBERON_0001494.md index cdaa026507..aca5fc1a72 100644 --- a/md/UBERON/94/UBERON_0001494.md +++ b/md/UBERON/94/UBERON_0001494.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001494 * *Label* = ulnar nerve - * *Definition* = In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_nerve] + * *Definition* = In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * nervus ulnaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ulnar_nerve[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus ulnaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ulnar_nerve, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * MA:0001174 * MESH:A08.800.800.720.050.850 * SCTID:181012009 - * UMLS:C0041602 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ulnar_Nerve] + * UMLS:C0041602 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ulnar_Nerve ] * VHOG:0000922 * Wikipedia:Ulnar_nerve * http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg @@ -48,8 +48,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005668 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001594.md b/md/UBERON/94/UBERON_0001594.md index 60b57a97bc..082f0eae63 100644 --- a/md/UBERON/94/UBERON_0001594.md +++ b/md/UBERON/94/UBERON_0001594.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001594 * *Label* = azygos vein - * *Definition* = An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011569[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Azygos_vein] + * *Definition* = An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011569, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Azygos_vein ] * *Comment* = Editor notes: check development relationships in different species ## Synonyms * azygos venous tree - * vena azygos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Azygos_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena azygos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Azygos_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,7 +18,7 @@ * GAID:528 * MA:0002085 * MESH:A07.231.908.106 - * UMLS:C0004526 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Azygos_Vein] + * UMLS:C0004526 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Azygos_Vein ] * Wikipedia:Azygos_vein * galen:AzygosVein * http://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001694.md b/md/UBERON/94/UBERON_0001694.md index 3822af23da..170849cb95 100644 --- a/md/UBERON/94/UBERON_0001694.md +++ b/md/UBERON/94/UBERON_0001694.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001694 * *Label* = petrous part of temporal bone - * *Definition* = The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Petrous_part_of_the_temporal_bone] + * *Definition* = The petrous portion of the temporal bone or pyramid is pyramidal and is wedged in at the base of the skull between the sphenoid and occipital bones. Directed medially, forward, and a little upward, it presents for examination a base, an apex, three surfaces, and three angles, and contains, in its interior, the essential parts of the organ of hearing. The petrous portion is among the most basal elements of the skull and forms part of the endocranium.[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Petrous_part_of_the_temporal_bone ] * *Comment* = derivative of prootic and opisthotic ## Synonyms - * pars petrosa (os temporale) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52871] + * pars petrosa (os temporale) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52871 ] * pars petrosa ossis temporalis - * petromastoid part of temporal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52871] - * petrosal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52871] - * petrous bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52871] + * petromastoid part of temporal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52871 ] + * petrosal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52871 ] + * petrous bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52871 ] * temporal bone petrous part - * petrosal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001553] + * petrosal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001553 ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001477 * MESH:A02.835.232.781.885.681 * SCTID:361733004 - * UMLS:C1261761 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ciliary_Process] + * UMLS:C1261761 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ciliary_Process ] * VHOG:0001553 * Wikipedia:Petrous_part_of_the_temporal_bone * http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The petrosal bone arises from the two otic bones on the lateral wall of the chondrocranium and encases the inner ear of mammals. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.258, see_Liem_KF][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001794.md b/md/UBERON/94/UBERON_0001794.md index db066b828e..172680346e 100644 --- a/md/UBERON/94/UBERON_0001794.md +++ b/md/UBERON/94/UBERON_0001794.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001794 * *Label* = inner limiting layer of retina - * *Definition* = the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010235] + * *Definition* = the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010235 ] * *Comment* = TODO - check frog/fish ## Synonyms - * inner limiting membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003222] + * inner limiting membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003222 ] * inner limiting membrane of retina * internal limiting lamina of retina * internal limiting membrane of retina - * retina inner limiting membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010235] + * retina inner limiting membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010235 ] * retina internal limiting lamina ## Cross-references @@ -21,7 +21,7 @@ * MA:0001313 * SCTID:280677004 * TAO:0001029 - * UMLS:C1512783 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Limiting_Membrane] + * UMLS:C1512783 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Limiting_Membrane ] * XAO:0003222 * ZFA:0001029 * ncithesaurus:Inner_Limiting_Membrane @@ -34,7 +34,7 @@ * [limiting membrane of retina](../../UBERON/19/UBERON_0007619.md) * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [Mueller cell](../../CL/36/CL_0000636.md) * [adjacent to](../../RO/20/RO_0002220.md) some [vitreous humor](../../UBERON/97/UBERON_0001797.md) ## Equivalencies @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Membrane on the apical surface of the retina. The retinal vasculature becomes adhered to the apical surface of the ILM by 30dpf[ZFIN:ZDB-PUB-071023-7, ZFIN:ZDB-PUB-120529-3]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001894.md b/md/UBERON/94/UBERON_0001894.md index ed2df28cc7..fa8faf2684 100644 --- a/md/UBERON/94/UBERON_0001894.md +++ b/md/UBERON/94/UBERON_0001894.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001894 * *Label* = diencephalon - * *Definition* = Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62001[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Diencephalon[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62001, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Diencephalon, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Note that in ABA, this is part of the brain stem ## Synonyms * between brain - * interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Swanson:2004] - * mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62001] - * thalamencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:anna] - * DiE [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1503[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * betweenbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000342] - * diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Diencephalon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dysgranular insular cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:DI] + * interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Swanson:2004 ] + * mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62001 ] + * thalamencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:anna ] + * DiE [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1503, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * betweenbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000342 ] + * diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Diencephalon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dysgranular insular cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:DI ] ## Cross-references @@ -45,12 +45,12 @@ * MESH:A08.186.211.730.385 * MIAA:0000420 * NIF_GrossAnatomy:birnlex_1503 - * NeuroNames:288 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1503] + * NeuroNames:288 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1503 ] * OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA * SCTID:279328001 * TAO:0000101 - * UMLS:C0012144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1503] - * UMLS:C0012144 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Diencephalon] + * UMLS:C0012144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1503 ] + * UMLS:C0012144 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Diencephalon ] * VHOG:0000318 * Wikipedia:Diencephalon * XAO:0000013 @@ -86,8 +86,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = diencephalic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0001994.md b/md/UBERON/94/UBERON_0001994.md index ba14c89c96..e2d2627353 100644 --- a/md/UBERON/94/UBERON_0001994.md +++ b/md/UBERON/94/UBERON_0001994.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001994 * *Label* = hyaline cartilage tissue - * *Definition* = Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000094[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000094, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms @@ -14,7 +14,7 @@ * FMA:64783 * MA:0000109 * SCTID:39298000 - * UMLS:C0225362 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hyaline_Cartilage] + * UMLS:C0225362 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hyaline_Cartilage ] * VSAO:0000094 * Wikipedia:Hyaline_cartilage * XAO:0004029 @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium[FMA:64783]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002094.md b/md/UBERON/94/UBERON_0002094.md index 1968e483e2..11644d1dc6 100644 --- a/md/UBERON/94/UBERON_0002094.md +++ b/md/UBERON/94/UBERON_0002094.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002094 * *Label* = interventricular septum - * *Definition* = Cardiac septum which separates the right ventricle from the left ventricle.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7133] + * *Definition* = Cardiac septum which separates the right ventricle from the left ventricle.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7133 ] * *Comment* = Development notes: involves the recruitment of myocardial cells as well as of non- muscular mesenchymal cells (Kaufman and Bard, 1999)[17064678] ## Synonyms - * heart interventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000085] - * heart ventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000085] - * interventricular septum of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002483] - * interventriculare cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002483] - * intraventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_septum] - * s. interventriculare cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_septum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septum inferius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_septum] - * septum membranaceum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_septum] + * heart interventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000085 ] + * heart ventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000085 ] + * interventricular septum of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002483 ] + * interventriculare cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002483 ] + * intraventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_septum ] + * s. interventriculare cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_septum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septum inferius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_septum ] + * septum membranaceum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_septum ] * ventricle septum - * ventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000085] - * ventricular septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Interventricular_septum] + * ventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000085 ] + * ventricular septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Interventricular_septum ] ## Cross-references @@ -30,7 +30,7 @@ * MA:0000085 * OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA * SCTID:362019005 - * UMLS:C0225870 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Interventricular_Septum] + * UMLS:C0225870 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Interventricular_Septum ] * VHOG:0000386 * Wikipedia:Interventricular_septum * galen:InterventricularSeptum @@ -52,7 +52,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [heart left ventricle](../../UBERON/84/UBERON_0002084.md) and [adjacent to](../../RO/20/RO_0002220.md) some [heart right ventricle](../../UBERON/80/UBERON_0002080.md) and [cardiac septum](../../UBERON/99/UBERON_0002099.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The partition separating the right and left ventricles of the heart. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The two most progressive vertebrate classes, the birds and mammals, have completed the ventricular septum and at long last have completely separated the two blood streams along the length of the major heart chambers. This development has obviously been brought about independently in the two cases, since mammals and birds have evolved independently from primitive reptiles.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_40674 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002194.md b/md/UBERON/94/UBERON_0002194.md index 5499a42bca..2e40667e88 100644 --- a/md/UBERON/94/UBERON_0002194.md +++ b/md/UBERON/94/UBERON_0002194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002194 * *Label* = capsule of lymph node - * *Definition* = Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node_capsule] + * *Definition* = Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node_capsule ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:74604 * MA:0000739 * SCTID:327532004 - * UMLS:C0229699 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node_Capsule] + * UMLS:C0229699 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node_Capsule ] * Wikipedia:Lymph_node_capsule * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Lymphknoten_%28Schwein%29.jpg/200px-Lymphknoten_%28Schwein%29.jpg * ncithesaurus:Lymph_Node_Capsule @@ -32,15 +32,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capsule](../../UBERON/93/UBERON_0003893.md) and [surrounds](../../RO/21/RO_0002221.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002294.md b/md/UBERON/94/UBERON_0002294.md index 5e630b039e..0effd173d4 100644 --- a/md/UBERON/94/UBERON_0002294.md +++ b/md/UBERON/94/UBERON_0002294.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002294 * *Label* = biliary system - * *Definition* = Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Biliary_system] + * *Definition* = Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Biliary_system ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002394.md b/md/UBERON/94/UBERON_0002394.md index c148737f49..2dfe2cc446 100644 --- a/md/UBERON/94/UBERON_0002394.md +++ b/md/UBERON/94/UBERON_0002394.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002394 * *Label* = bile duct - * *Definition* = Duct that carries bile from the liver to the small intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bile_duct[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001100] + * *Definition* = Duct that carries bile from the liver to the small intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bile_duct, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001100 ] * *Comment* = The path is as follows: Bile canaliculi ? Canals of Hering ? interlobular bile ducts ? intrahepatic bile ducts ? left and right hepatic ducts merge to form ? common hepatic duct exits liver and joins ? cystic duct (from gall bladder) forming ? common bile duct ? joins with pancreatic duct ? forming ampulla of Vater ? enters duodenum [WP] ## Synonyms - * biliary duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9706] - * gall duct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000122] + * biliary duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9706 ] + * gall duct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000122 ] * hepatic duct ## Cross-references @@ -25,7 +25,7 @@ * MESH:A03.159.183 * OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA * SCTID:276157007 - * UMLS:C0005400 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Bile_Duct] + * UMLS:C0005400 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Bile_Duct ] * VHOG:0000212 * Wikipedia:Bile_duct * XAO:0000134 @@ -48,7 +48,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [channel for](../../core#channel/or/core#channel_for.md) some [bile](../../UBERON/70/UBERON_0001970.md) and [duct](../../UBERON/58/UBERON_0000058.md) ## Other Logical Axioms @@ -58,8 +58,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any of the excretory ducts in the liver that convey bile between the liver and the intestine. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the amphibian liver has characteristics in common with both fish and terrestrial vertebrates. (...) The histological structure of the liver is similar to that in other vertebrates, with hepatocytes arranged in clusters and cords separated by a meshwork of sinusoids and the presence of the traditional triad of portal venule, hepatic arteriole, and bile duct.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002494.md b/md/UBERON/94/UBERON_0002494.md index e80f5ce611..db816be4fc 100644 --- a/md/UBERON/94/UBERON_0002494.md +++ b/md/UBERON/94/UBERON_0002494.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002494 * *Label* = papillary muscle of heart - * *Definition* = In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Papillary_muscle] + * *Definition* = In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Papillary_muscle ] ## Synonyms - * papillary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002800] - * papillary muscle of ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002800] - * ventricular papillary muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002800] + * papillary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002800 ] + * papillary muscle of ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002800 ] + * ventricular papillary muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002800 ] * ventricule papillary muscle - * musculus papillaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Papillary_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus papillaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Papillary_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.633.580.680 * OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ * SCTID:279329009 - * UMLS:C0030352 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Papillary_Muscle] + * UMLS:C0030352 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Papillary_Muscle ] * VHOG:0001392 * Wikipedia:Papillary_muscle * galen:PapillaryMuscle @@ -50,8 +50,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = On the internal or parietal surface of the left ventricle in man and in mammals are two papillary muscles, which are almost identical and well developed.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002594.md b/md/UBERON/94/UBERON_0002594.md index ddc7d141b3..89228b23f2 100644 --- a/md/UBERON/94/UBERON_0002594.md +++ b/md/UBERON/94/UBERON_0002594.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002594 * *Label* = dentatothalamic tract - * *Definition* = The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentatothalamic_tract] + * *Definition* = The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentatothalamic_tract ] ## Synonyms - * dentatothalamic fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72462] - * dt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1104[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * tractus dentatothalamicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dentatothalamic_tract[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dentatothalamic fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72462 ] + * dt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1104, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * tractus dentatothalamicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dentatothalamic_tract, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:dt * FMA:72462 * NIF_GrossAnatomy:birnlex_1104 - * NeuroNames:534 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1104] - * UMLS:C0175411 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1104] + * NeuroNames:534 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1104 ] + * UMLS:C0175411 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1104 ] * Wikipedia:Dentatothalamic_tract ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002694.md b/md/UBERON/94/UBERON_0002694.md index e2312620d5..e02d160cf5 100644 --- a/md/UBERON/94/UBERON_0002694.md +++ b/md/UBERON/94/UBERON_0002694.md @@ -6,20 +6,20 @@ ## Synonyms - * anterior hypothalamic commissure (Ganser) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62053] - * anterior hypothalamic decussation of Ganser [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62053] - * ahc [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1424[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * commissura hypothalamica anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:390[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura supraoptica dorsalis pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:390[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * commissura supraoptica superior pars dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:390[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior hypothalamic commissure (Ganser) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62053 ] + * anterior hypothalamic decussation of Ganser [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62053 ] + * ahc [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1424, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * commissura hypothalamica anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:390, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura supraoptica dorsalis pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:390, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * commissura supraoptica superior pars dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:390, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:ahc * FMA:62053 * NIF_GrossAnatomy:birnlex_1424 - * NeuroNames:390 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1424] - * UMLS:C0175337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1424] + * NeuroNames:390 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1424 ] + * UMLS:C0175337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1424 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002794.md b/md/UBERON/94/UBERON_0002794.md index 1e37fb06de..6f696c9de6 100644 --- a/md/UBERON/94/UBERON_0002794.md +++ b/md/UBERON/94/UBERON_0002794.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002794 * *Label* = medial longitudinal fasciculus of pons - * *Definition* = A medial longitudinal fasciculus that is part of a pons [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A medial longitudinal fasciculus that is part of a pons [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * medial longitudinal fasciculus of pons of varolius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons of varolius medial longitudinal fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fasciculus longitudinalis medialis (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:600[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial longitudinal fasciculus of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:600] + * medial longitudinal fasciculus of pons of varolius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons of varolius medial longitudinal fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fasciculus longitudinalis medialis (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:600, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial longitudinal fasciculus of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:600 ] ## Cross-references * BAMS:mlfp * FMA:72493 * NIF_GrossAnatomy:birnlex_1708 - * NeuroNames:600 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1708] - * UMLS:C0228440 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1708] + * NeuroNames:600 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1708 ] + * UMLS:C0228440 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1708 ] ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [medial longitudinal fasciculus](../../UBERON/09/UBERON_0002309.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pons](../../UBERON/88/UBERON_0000988.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002894.md b/md/UBERON/94/UBERON_0002894.md index bec38a0573..ed8cacd092 100644 --- a/md/UBERON/94/UBERON_0002894.md +++ b/md/UBERON/94/UBERON_0002894.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002894 * *Label* = olfactory cortex - * *Definition* = Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2707] - * *Comment* = Editor note - consider relationship: receives_input_from UBERON:0002264 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + GO] + * *Definition* = Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2707 ] + * *Comment* = Editor note - consider relationship: receives_input_from UBERON:0002264 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = GO ] ## Synonyms - * archaeocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001446] - * archeocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001446] - * olfactory areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:OLF] - * olfactory lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000193] + * archaeocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001446 ] + * archeocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001446 ] + * olfactory areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:OLF ] + * olfactory lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000193 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0000193 * NIF_GrossAnatomy:birnlex_2707 * NeuroNames:2275 - * UMLS:C0162434 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2707] + * UMLS:C0162434 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2707 ] * VHOG:0000325 * Wikipedia:Olfactory_cortex @@ -48,8 +48,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO][GO:0021989]. * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In mammals) Odorant detection is mediated by millions of olfactory sensory neurons located in the olfactory epithelium lining the nasal cavity. These neurons transmit sensory signals to the olfactory bulb of the brain, which in turn sends signals to the olfactory cortex.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0002994.md b/md/UBERON/94/UBERON_0002994.md index 1fa02ffc81..00ef7dfe3b 100644 --- a/md/UBERON/94/UBERON_0002994.md +++ b/md/UBERON/94/UBERON_0002994.md @@ -6,17 +6,17 @@ ## Synonyms - * pretectal area nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72401] - * nucleus area pretectalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:468[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus of the pretectal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:468] + * pretectal area nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72401 ] + * nucleus area pretectalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:468, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus of the pretectal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:468 ] ## Cross-references * BAMS:PTA * FMA:72401 * NIF_GrossAnatomy:birnlex_864 - * NeuroNames:468 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_864] - * UMLS:C0175358 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_864] + * NeuroNames:468 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_864 ] + * UMLS:C0175358 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_864 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003094.md b/md/UBERON/94/UBERON_0003094.md index c17cc271d9..57ea6bea49 100644 --- a/md/UBERON/94/UBERON_0003094.md +++ b/md/UBERON/94/UBERON_0003094.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003094 * *Label* = infraorbital lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * infraorbital line [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000524] + * infraorbital line [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000524 ] ## Cross-references @@ -40,8 +40,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of anterior lateral line (TAO:0001470)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003194.md b/md/UBERON/94/UBERON_0003194.md index 830dced647..38365cb4d4 100644 --- a/md/UBERON/94/UBERON_0003194.md +++ b/md/UBERON/94/UBERON_0003194.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003294.md b/md/UBERON/94/UBERON_0003294.md index 87c840ad5b..ff62755ecb 100644 --- a/md/UBERON/94/UBERON_0003294.md +++ b/md/UBERON/94/UBERON_0003294.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003294 * *Label* = gland of foregut - * *Definition* = A gland that is part of a foregut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a foregut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foregut gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foregut gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut](../../UBERON/41/UBERON_0001041.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003394.md b/md/UBERON/94/UBERON_0003394.md index bbe730e119..0c031c3568 100644 --- a/md/UBERON/94/UBERON_0003394.md +++ b/md/UBERON/94/UBERON_0003394.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003394 * *Label* = mesentery of hindgut - * *Definition* = A mesentery that is part of a hindgut [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a hindgut [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hindgut mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * hindgut mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindgut](../../UBERON/46/UBERON_0001046.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003494.md b/md/UBERON/94/UBERON_0003494.md index 19f2dacf29..1c4d92157b 100644 --- a/md/UBERON/94/UBERON_0003494.md +++ b/md/UBERON/94/UBERON_0003494.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003494 * *Label* = respiratory system venule - * *Definition* = A venule that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A venule that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius venule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * venule of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * venule of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius venule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * venule of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * venule of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) and [venule](../../UBERON/79/UBERON_0001979.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003594.md b/md/UBERON/94/UBERON_0003594.md index dc4b23d8ec..6e0c189384 100644 --- a/md/UBERON/94/UBERON_0003594.md +++ b/md/UBERON/94/UBERON_0003594.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003594 * *Label* = pelvis connective tissue - * *Definition* = A portion of connective tissue that is part of a pelvis [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a pelvis [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvis textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of pelvis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvis textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of pelvis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvis](../../UBERON/55/UBERON_0002355.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003694.md b/md/UBERON/94/UBERON_0003694.md index 0a16d94b79..b07d52d288 100644 --- a/md/UBERON/94/UBERON_0003694.md +++ b/md/UBERON/94/UBERON_0003694.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003694 * *Label* = atlanto-axial joint - * *Definition* = The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] + * *Definition* = The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] ## Synonyms - * atlanto axial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:250] - * atlantoaxial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:250] - * articulatio atlantoaxialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] - * articulatio atlantoepistrophica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] - * atlantoaxial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] - * lateral atlanto-axial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] - * median atlanto-axial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Atlanto-axial_joint] + * atlanto axial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:250 ] + * atlantoaxial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:250 ] + * articulatio atlantoaxialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] + * articulatio atlantoepistrophica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] + * atlantoaxial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] + * lateral atlanto-axial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] + * median atlanto-axial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Atlanto-axial_joint ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.583.097 * OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA * SCTID:361832004 - * UMLS:C0004168 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Atlanto-axial_Joint] + * UMLS:C0004168 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Atlanto-axial_Joint ] * Wikipedia:Atlanto-axial_joint * http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png * ncithesaurus:Atlanto-axial_Joint @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003894.md b/md/UBERON/94/UBERON_0003894.md index 9540321749..6cfc0579e1 100644 --- a/md/UBERON/94/UBERON_0003894.md +++ b/md/UBERON/94/UBERON_0003894.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003894 * *Label* = liver primordium - * *Definition* = A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:3211492755] + * *Definition* = A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:3211492755 ] * *Comment* = Editor's note: consider adding further subdivisions of the endoderm, e.g. ventral foregut. Note we place two EFO classes here, it's not clear how they differ ## Synonyms - * embryological hepatic plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * primordium of the liver [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Primordium_of_the_Liver] - * hepatic plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000744] - * liver bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003266[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000124[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * liver endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0002577] + * embryological hepatic plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * primordium of the liver [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Primordium_of_the_Liver ] + * hepatic plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000744 ] + * liver bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003266, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000124, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * liver endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0002577 ] ## Cross-references @@ -24,8 +24,8 @@ * EHDAA:973 * EMAPA:16847 * TAO:0000124 - * UMLS:C0734013 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hepatic_Cord] - * UMLS:C1514451 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Primordium_of_the_Liver] + * UMLS:C0734013 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hepatic_Cord ] + * UMLS:C1514451 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Primordium_of_the_Liver ] * XAO:0003266 * ZFA:0000124 * ncithesaurus:Hepatic_Cord @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [liver](../../UBERON/07/UBERON_0002107.md) and [primordium](../../UBERON/48/UBERON_0001048.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0003994.md b/md/UBERON/94/UBERON_0003994.md index 730a79704e..ff6a551a30 100644 --- a/md/UBERON/94/UBERON_0003994.md +++ b/md/UBERON/94/UBERON_0003994.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003994 * *Label* = pelvic ligament - * *Definition* = the dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009807] + * *Definition* = the dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009807 ] ## Synonyms - * pelvis ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002948] + * pelvis ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002948 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004194.md b/md/UBERON/94/UBERON_0004194.md index c3864a921b..90c896c0a5 100644 --- a/md/UBERON/94/UBERON_0004194.md +++ b/md/UBERON/94/UBERON_0004194.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004194 * *Label* = long nephron - * *Definition* = Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072029] + * *Definition* = Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072029 ] ## Synonyms - * juxtamedullary nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072029[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764] + * juxtamedullary nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072029, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764 ] ## Cross-references - * UMLS:C1517630 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Juxtamedullary_Nephron] + * UMLS:C1517630 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Juxtamedullary_Nephron ] * ncithesaurus:Juxtamedullary_Nephron ## Subsets @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004294.md b/md/UBERON/94/UBERON_0004294.md index 93be3e7755..e1a6ef1a8c 100644 --- a/md/UBERON/94/UBERON_0004294.md +++ b/md/UBERON/94/UBERON_0004294.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004294 * *Label* = glomerular capillary endothelium - * *Definition* = An endothelium that is part of a glomerular capillary. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a glomerular capillary. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * renal glomerulus capillary endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * renal glomerulus capillary endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001658 * SCTID:243993006 - * UMLS:C0227647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endothelium_of_the_Glomerular_Capillary] + * UMLS:C0227647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endothelium_of_the_Glomerular_Capillary ] * ncithesaurus:Endothelium_of_the_Glomerular_Capillary ## Subsets @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [glomerular capillary](../../UBERON/12/UBERON_0004212.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004394.md b/md/UBERON/94/UBERON_0004394.md index 5cee26f1c8..6c4a3adc53 100644 --- a/md/UBERON/94/UBERON_0004394.md +++ b/md/UBERON/94/UBERON_0004394.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004394 * *Label* = epiphysis of fourth metacarpal bone - * *Definition* = An epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metacarpal bone of digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fourth metacarpal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86329] + * fourth metacarpal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86329 ] * metacarpal 4 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metacarpal bone of digit 4](../../UBERON/48/UBERON_0003648.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004494.md b/md/UBERON/94/UBERON_0004494.md index 5f7453496f..7c99890948 100644 --- a/md/UBERON/94/UBERON_0004494.md +++ b/md/UBERON/94/UBERON_0004494.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004494 * *Label* = cardiac muscle tissue of papillary muscle - * *Definition* = A portion of cardiac muscle tissue that is part of a papillary muscle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of cardiac muscle tissue that is part of a papillary muscle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) and [part_of](../../BFO/50/BFO_0000050.md) some [papillary muscle of heart](../../UBERON/94/UBERON_0002494.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004694.md b/md/UBERON/94/UBERON_0004694.md index 2368e49362..b9934eaea6 100644 --- a/md/UBERON/94/UBERON_0004694.md +++ b/md/UBERON/94/UBERON_0004694.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004694 * *Label* = harderian gland epithelium - * *Definition* = An epithelium that is part of a Harderian gland [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a Harderian gland [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Harderian gland](../../UBERON/87/UBERON_0004187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004794.md b/md/UBERON/94/UBERON_0004794.md index 5250e67965..009e53c7fe 100644 --- a/md/UBERON/94/UBERON_0004794.md +++ b/md/UBERON/94/UBERON_0004794.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004794 * *Label* = esophagus secretion - * *Definition* = A secretion that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A secretion that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * esophageal secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:79662] - * gullet secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophageal secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:79662 ] + * gullet secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * FMA:79662 * MA:0002514 - * UMLS:C0227179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Esophagus_Secretion] + * UMLS:C0227179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Esophagus_Secretion ] * ncithesaurus:Esophagus_Secretion ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004894.md b/md/UBERON/94/UBERON_0004894.md index 5d9d0479a8..dc180e1787 100644 --- a/md/UBERON/94/UBERON_0004894.md +++ b/md/UBERON/94/UBERON_0004894.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004894 * *Label* = alveolar wall - * *Definition* = A wall that contains the alveoli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012626[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010903] + * *Definition* = A wall that contains the alveoli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012626, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010903 ] ## Synonyms - * pulmonary alveolar wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14117] - * pulmonary interalveolar septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14117] - * wall of pulmonary alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14117] + * pulmonary alveolar wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14117 ] + * pulmonary interalveolar septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14117 ] + * wall of pulmonary alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14117 ] ## Cross-references @@ -17,7 +17,7 @@ * FMA:14117 * MA:0002568 * SCTID:361965008 - * UMLS:C0225695 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Alveolar_Wall] + * UMLS:C0225695 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Alveolar_Wall ] * ncithesaurus:Alveolar_Wall ## Subsets @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [alveolus of lung](../../UBERON/99/UBERON_0002299.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0008872 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0004994.md b/md/UBERON/94/UBERON_0004994.md index b3c56597a3..f0d4472681 100644 --- a/md/UBERON/94/UBERON_0004994.md +++ b/md/UBERON/94/UBERON_0004994.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004994 * *Label* = mucosa of fundus of stomach - * *Definition* = A mucosa that is part of a fundus of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a fundus of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fundus gastricus (ventricularis) mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus gastricus (ventricularis) mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus gastricus (ventricularis) mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus gastricus (ventricularis) organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fundus of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of fundus gastricus (ventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of fundus gastricus (ventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of stomach fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of stomach fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of fundus gastricus (ventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of stomach fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of fundus gastricus (ventricularis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of fundus of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach fundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach fundus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach fundus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach fundus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach fundus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * fundus gastricus (ventricularis) mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus gastricus (ventricularis) mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus gastricus (ventricularis) mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus gastricus (ventricularis) organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fundus of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of fundus gastricus (ventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of fundus gastricus (ventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of stomach fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of stomach fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of fundus gastricus (ventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of stomach fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of fundus gastricus (ventricularis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of fundus of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach fundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach fundus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach fundus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach fundus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach fundus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -47,15 +47,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fundus of stomach](../../UBERON/60/UBERON_0001160.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005094.md b/md/UBERON/94/UBERON_0005094.md index a3fe04209e..9ffbb4fbf8 100644 --- a/md/UBERON/94/UBERON_0005094.md +++ b/md/UBERON/94/UBERON_0005094.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005094 * *Label* = beak - * *Definition* = The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. The term beak is also used to refer to a similar mouthpart in some Ornithischian dinosaurs, monotremes, cephalopods, cetaceans, pufferfishes, turtles, Anuran tadpoles and sirens[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0071728[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Beak] + * *Definition* = The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. The term beak is also used to refer to a similar mouthpart in some Ornithischian dinosaurs, monotremes, cephalopods, cetaceans, pufferfishes, turtles, Anuran tadpoles and sirens[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0071728, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Beak ] * *Comment* = TODO - add superclass ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005194.md b/md/UBERON/94/UBERON_0005194.md index 58e5f2ddf0..b6583fabea 100644 --- a/md/UBERON/94/UBERON_0005194.md +++ b/md/UBERON/94/UBERON_0005194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005194 * *Label* = thoracic vein - * *Definition* = A vein that is part of a thorax [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a thorax [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -12,7 +12,7 @@ * MA:0002235 * SCTID:281472008 - * UMLS:C0226629 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thoracic_Vein] + * UMLS:C0226629 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thoracic_Vein ] * ncithesaurus:Thoracic_Vein ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005294.md b/md/UBERON/94/UBERON_0005294.md index 74a9c1e5f6..84783b8a96 100644 --- a/md/UBERON/94/UBERON_0005294.md +++ b/md/UBERON/94/UBERON_0005294.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005294 * *Label* = genital ridge - * *Definition* = The precursor to the gonads. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonadal_ridge] + * *Definition* = The precursor to the gonads. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonadal_ridge ] * *Comment* = TODO - check developmental relationships. merge with urogenital ridge? ## Synonyms - * gonadal ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonadal_ridge] - * crista gonadalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gonadal_ridge[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gonadal ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonadal_ridge ] + * crista gonadalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gonadal_ridge, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EFO:0001414 * EHDAA2:0004044 * SCTID:361399001 - * UMLS:C1512243 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gonadal_Ridge] + * UMLS:C1512243 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gonadal_Ridge ] * Wikipedia:Gonadal_ridge * XAO:0000018 * http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005394.md b/md/UBERON/94/UBERON_0005394.md index e75a0209f5..63501bf232 100644 --- a/md/UBERON/94/UBERON_0005394.md +++ b/md/UBERON/94/UBERON_0005394.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005394 * *Label* = cortical layer V - * *Definition* = Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] + * *Definition* = Layer of neocortex lying deep to the internal granule cell layer (layer 4) defined cytoarchitecturally by the predominance of large pyramidal cell bodies [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] ## Synonyms - * betz' cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77812] - * cerebral cortex, layer 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX5] - * internal pyramidal cell layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * internal pyramidal layer of isocortex [layer v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77812] - * internal pyramidal layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77812] - * lamina pyramidalis interna isocorticis [lamina v] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77812[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer 5 of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * layer V of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * neocortex internal pyramidal cell layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * neocortex layer 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * neocortex layer V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * neocortical layer 5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] - * neocortical layer V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090811] + * betz' cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77812 ] + * cerebral cortex, layer 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX5 ] + * internal pyramidal cell layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * internal pyramidal layer of isocortex [layer v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77812 ] + * internal pyramidal layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77812 ] + * lamina pyramidalis interna isocorticis [lamina v] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77812, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer 5 of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * layer V of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * neocortex internal pyramidal cell layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * neocortex layer 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * neocortex layer V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * neocortical layer 5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] + * neocortical layer V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090811 ] * ganglionic layer * ganglionic layer of cerebral cortex @@ -29,7 +29,7 @@ * FMA:77812 * MA:0000901 * NIF_GrossAnatomy:nlx_anat_090811 - * UMLS:C1517447 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ganglionic_Layer] + * UMLS:C1517447 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ganglionic_Layer ] * ncithesaurus:Ganglionic_Layer ## Subsets @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005494.md b/md/UBERON/94/UBERON_0005494.md index 810d93d4c3..729b81ff71 100644 --- a/md/UBERON/94/UBERON_0005494.md +++ b/md/UBERON/94/UBERON_0005494.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005494 * *Label* = intermediate mesenchyme - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3515562&group_id=76834&atid=994726 ] ## Synonyms @@ -36,8 +36,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005594.md b/md/UBERON/94/UBERON_0005594.md index 9cfd4d23df..56f8f4ea29 100644 --- a/md/UBERON/94/UBERON_0005594.md +++ b/md/UBERON/94/UBERON_0005594.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005594 * *Label* = head somite - * *Definition* = Somite located in the head region, caudal to the otic vesicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11830559] + * *Definition* = Somite located in the head region, caudal to the otic vesicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11830559 ] * *Comment* = Development notes: They provide the epaxial and hypaxial muscles of the neck, the pharyngeal and laryngeal muscles that develop in the caudal branchial arches and the musculature of the tongue. Despite their localisation in the head, myogenic precursors from occipital somites essentially follow the trunk programmes (E. H. Walters and S. D., unpublished). during evolution, have been secondarily incorporated into the head (Gans and Northcutt, 1983)[PMID:11830559]. AO notes: EHDAA2 has both 'head somite' and 'head somite group', with part_of and develops_from for latter. Taxon notes: in humans this includes somites 1-4 ## Synonyms - * occipital somite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11830559[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000313] - * cranial somite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000313] + * occipital somite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11830559, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000313 ] + * cranial somite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000313 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [develops from](../../RO/02/RO_0002202.md) some [head paraxial mesoderm](../../UBERON/17/UBERON_0009617.md) and [somite](../../UBERON/29/UBERON_0002329.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005694.md b/md/UBERON/94/UBERON_0005694.md index 695f3cece1..6b90a7fefd 100644 --- a/md/UBERON/94/UBERON_0005694.md +++ b/md/UBERON/94/UBERON_0005694.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005694 * *Label* = manual digit 4 mesenchyme - * *Definition* = Mesenchyme that is part of a manual digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a manual digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 4](../../UBERON/24/UBERON_0003624.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0005894.md b/md/UBERON/94/UBERON_0005894.md index bca923bfd0..6156d4eb16 100644 --- a/md/UBERON/94/UBERON_0005894.md +++ b/md/UBERON/94/UBERON_0005894.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005894 * *Label* = locomotive weight-bearing appendage - * *Definition* = OBSOLETE: A leg is a limb on which an animal walks and stands (GO:0035110). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035110[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Leg] + * *Definition* = OBSOLETE: A leg is a limb on which an animal walks and stands (GO:0035110). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035110, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Leg ] * *Comment* = This class was originally introduced to support GO:0035110, but this has been obsoleted, because leg is a mechano-functional grouping ## Synonyms - * leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035110] + * leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035110 ] ## Cross-references @@ -29,9 +29,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0000026 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005894 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/94/UBERON_0005994.md b/md/UBERON/94/UBERON_0005994.md index 5229ea75ba..7f2da09738 100644 --- a/md/UBERON/94/UBERON_0005994.md +++ b/md/UBERON/94/UBERON_0005994.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005994 * *Label* = chordae tendineae - * *Definition* = the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010608[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chordae_tendineae] + * *Definition* = the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010608, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chordae_tendineae ] ## Synonyms - * chorda tendinea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12225] - * chordae tendineae cordis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chordae_tendineae[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * chorda tendinea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12225 ] + * chordae tendineae cordis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chordae_tendineae, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -16,7 +16,7 @@ * GAID:564 * MESH:A07.541.510.240 * SCTID:279330004 - * UMLS:C0008484 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chordae_Tendineae] + * UMLS:C0008484 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chordae_Tendineae ] * Wikipedia:Chordae_tendineae * http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png * ncithesaurus:Chordae_Tendineae @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006094.md b/md/UBERON/94/UBERON_0006094.md index 7210d7132f..4b8d7813d3 100644 --- a/md/UBERON/94/UBERON_0006094.md +++ b/md/UBERON/94/UBERON_0006094.md @@ -3,27 +3,27 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006094 * *Label* = superior parietal cortex - * *Definition* = Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1450] + * *Definition* = Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1450 ] ## Synonyms - * superior parietal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1450] - * superior parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61899] - * superior parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1450] - * superior parietal lobule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1450] - * superior portion of parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61899] - * superior portion of parietal gyrus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1450] - * gyrus parietalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:106[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobulus parietalis superior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:106[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * superior parietal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1450 ] + * superior parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61899 ] + * superior parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1450 ] + * superior parietal lobule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1450 ] + * superior portion of parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61899 ] + * superior portion of parietal gyrus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1450 ] + * gyrus parietalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:106, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobulus parietalis superior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:106, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:SPL * FMA:61899 * NIF_GrossAnatomy:birnlex_1450 - * NeuroNames:106 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1450] + * NeuroNames:106 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1450 ] * SCTID:279168006 - * UMLS:C0152303 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1450] + * UMLS:C0152303 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1450 ] ## Subsets @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006194.md b/md/UBERON/94/UBERON_0006194.md index f3913d6f15..44183e5ed8 100644 --- a/md/UBERON/94/UBERON_0006194.md +++ b/md/UBERON/94/UBERON_0006194.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006194 * *Label* = renal sinus of right kidney - * *Definition* = A renal sinus that is part of a right kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A renal sinus that is part of a right kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * right renal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17621] + * right renal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17621 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [right kidney](../../UBERON/39/UBERON_0004539.md) and [renal sinus](../../UBERON/71/UBERON_0006171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006294.md b/md/UBERON/94/UBERON_0006294.md index 93d044661f..f8033dbe01 100644 --- a/md/UBERON/94/UBERON_0006294.md +++ b/md/UBERON/94/UBERON_0006294.md @@ -7,7 +7,7 @@ ## Synonyms - * stapedial anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/j.1469-7580.2005.00441.x] + * stapedial anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/j.1469-7580.2005.00441.x ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [stapes endochondral element](../../UBERON/16/UBERON_0015016.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006494.md b/md/UBERON/94/UBERON_0006494.md index 0c14be3e89..f4aa3c9e0a 100644 --- a/md/UBERON/94/UBERON_0006494.md +++ b/md/UBERON/94/UBERON_0006494.md @@ -6,8 +6,8 @@ ## Synonyms - * apex of arytenoid cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55348] - * arytenoid cartilage apex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:55348] + * apex of arytenoid cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55348 ] + * arytenoid cartilage apex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:55348 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006594.md b/md/UBERON/94/UBERON_0006594.md index 8666f75d8b..974ab7f154 100644 --- a/md/UBERON/94/UBERON_0006594.md +++ b/md/UBERON/94/UBERON_0006594.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006594 * *Label* = chorda gubernaculum - * *Definition* = A portion of the gubernaculum testis and round ligament that develops in the body wall of the embryo. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckSource] + * *Definition* = A portion of the gubernaculum testis and round ligament that develops in the body wall of the embryo. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckSource ] ## Synonyms - * genitoinguinal ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/genitoinguinal-ligament.html] + * genitoinguinal ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/genitoinguinal-ligament.html ] * gubernacular cord - * ligamentum genitoinguinale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/genitoinguinal-ligament.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * plica gubernaculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:11997885] + * ligamentum genitoinguinale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/genitoinguinal-ligament.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * plica gubernaculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:11997885 ] * plica gubernaculum - * plica gubernatrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/genitoinguinal-ligament.html] - * plicae gubernaculi [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * plicae gubernaculum [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * plicae gubernatrix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/genitoinguinal-ligament.html[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * plica gubernatrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/genitoinguinal-ligament.html ] + * plicae gubernaculi [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * plicae gubernaculum [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * plicae gubernatrix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/genitoinguinal-ligament.html, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006694.md b/md/UBERON/94/UBERON_0006694.md index 6066320856..4b3dd15f0a 100644 --- a/md/UBERON/94/UBERON_0006694.md +++ b/md/UBERON/94/UBERON_0006694.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) and [vasculature](../../UBERON/49/UBERON_0002049.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0006794.md b/md/UBERON/94/UBERON_0006794.md index 2838b1dc95..408509a31a 100644 --- a/md/UBERON/94/UBERON_0006794.md +++ b/md/UBERON/94/UBERON_0006794.md @@ -7,7 +7,7 @@ ## Synonyms - * optic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1233] + * optic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1233 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0007094.md b/md/UBERON/94/UBERON_0007094.md index 78a760c8e4..d73d0194ac 100644 --- a/md/UBERON/94/UBERON_0007094.md +++ b/md/UBERON/94/UBERON_0007094.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0007194.md b/md/UBERON/94/UBERON_0007194.md index cc511c3407..891008488c 100644 --- a/md/UBERON/94/UBERON_0007194.md +++ b/md/UBERON/94/UBERON_0007194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007194 * *Label* = vesicular gland - * *Definition* = The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003717] + * *Definition* = The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003717 ] * *Comment* = todo - check this agaist seminal vesicle ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0007294.md b/md/UBERON/94/UBERON_0007294.md index 2dfbab99f1..8789c59474 100644 --- a/md/UBERON/94/UBERON_0007294.md +++ b/md/UBERON/94/UBERON_0007294.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007294 * *Label* = presumptive rhombomere 7 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 7. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 7. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 7](../../UBERON/23/UBERON_0005523.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0007794.md b/md/UBERON/94/UBERON_0007794.md index 31fcd3727e..a1565d4b30 100644 --- a/md/UBERON/94/UBERON_0007794.md +++ b/md/UBERON/94/UBERON_0007794.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007794 * *Label* = serous fluid - * *Definition* = Transudate contained in a serous sac. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20932] + * *Definition* = Transudate contained in a serous sac. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20932 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0008194.md b/md/UBERON/94/UBERON_0008194.md index 9e497aff36..8656aaf296 100644 --- a/md/UBERON/94/UBERON_0008194.md +++ b/md/UBERON/94/UBERON_0008194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008194 * *Label* = tibiotarsus - * *Definition* = The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tibiotarsus] + * *Definition* = The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tibiotarsus ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [tibiotarsus endochondral element](../../UBERON/11/UBERON_0015011.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0008294.md b/md/UBERON/94/UBERON_0008294.md index 10f5cae245..d37745df28 100644 --- a/md/UBERON/94/UBERON_0008294.md +++ b/md/UBERON/94/UBERON_0008294.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008294 * *Label* = feather barb - * *Definition* = One of a series of branches fused to the rachis (stem) of a feather. The barbs themselves also have branches called barbules, which have hooks that lock the barbs together[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Barb_(feather)] + * *Definition* = One of a series of branches fused to the rachis (stem) of a feather. The barbs themselves also have branches called barbules, which have hooks that lock the barbs together[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Barb_(feather) ] ## Synonyms - * barb [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * barb [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0008594.md b/md/UBERON/94/UBERON_0008594.md index d863fb89b4..46df26e3bb 100644 --- a/md/UBERON/94/UBERON_0008594.md +++ b/md/UBERON/94/UBERON_0008594.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008594 * *Label* = zygomaticus minor muscle - * *Definition* = The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). </gallery> Like all muscles of facial expression, it is innervated by the facial nerve (CN VII). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_minor_muscle] + * *Definition* = The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). </gallery> Like all muscles of facial expression, it is innervated by the facial nerve (CN VII). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_minor_muscle ] ## Synonyms - * zygomaticus minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Zygomaticus_minor_muscle] + * zygomaticus minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Zygomaticus_minor_muscle ] ## Cross-references * FMA:46811 * SCTID:244741006 - * UMLS:C0224116 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Zygomaticus_Minor] + * UMLS:C0224116 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Zygomaticus_Minor ] * Wikipedia:Zygomaticus_minor_muscle * http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png * ncithesaurus:Zygomaticus_Minor @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0008894.md b/md/UBERON/94/UBERON_0008894.md index db5dbc253f..0b8122f25b 100644 --- a/md/UBERON/94/UBERON_0008894.md +++ b/md/UBERON/94/UBERON_0008894.md @@ -7,8 +7,8 @@ ## Synonyms - * gill primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000448] - * internal gill bud [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001107] + * gill primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000448 ] + * internal gill bud [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001107 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0008994.md b/md/UBERON/94/UBERON_0008994.md index 7bc9641cb8..e6e95684c2 100644 --- a/md/UBERON/94/UBERON_0008994.md +++ b/md/UBERON/94/UBERON_0008994.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008994 * *Label* = equine glandular stomach - * *Definition* = Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003791] + * *Definition* = Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003791 ] * *Comment* = Editor notes: We have a distinct class for 'glandular region of stomach'. We may want to merge into this class, even though this is not considered a distinct stomach. ## Synonyms - * stomachus glandularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003791] + * stomachus glandularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003791 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0009194.md b/md/UBERON/94/UBERON_0009194.md index 511f9891ec..8d1357a1e4 100644 --- a/md/UBERON/94/UBERON_0009194.md +++ b/md/UBERON/94/UBERON_0009194.md @@ -6,7 +6,7 @@ ## Synonyms - * basisphenoid cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001338] + * basisphenoid cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001338 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0009494.md b/md/UBERON/94/UBERON_0009494.md index 11426d8d57..7c401bf6b0 100644 --- a/md/UBERON/94/UBERON_0009494.md +++ b/md/UBERON/94/UBERON_0009494.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009494 * *Label* = pharyngeal arch mesenchymal region - * *Definition* = A portion of mesenchymal tissue associated with an individual pharyngeal arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A portion of mesenchymal tissue associated with an individual pharyngeal arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262] ## Synonyms - * branchial arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011262] - * pharyngeal arch mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * branchial arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011262 ] + * pharyngeal arch mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pharyngeal arch](../../UBERON/39/UBERON_0002539.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0009894.md b/md/UBERON/94/UBERON_0009894.md index 555a82ec0d..214b63c3d0 100644 --- a/md/UBERON/94/UBERON_0009894.md +++ b/md/UBERON/94/UBERON_0009894.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0009994.md b/md/UBERON/94/UBERON_0009994.md index d34937f36e..5328514bb1 100644 --- a/md/UBERON/94/UBERON_0009994.md +++ b/md/UBERON/94/UBERON_0009994.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009994 * *Label* = secondary chorionic villus - * *Definition* = A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] + * *Definition* = A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm ] ## Synonyms ## Cross-references - * UMLS:C1519213 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Secondary_Chorionic_Villus] + * UMLS:C1519213 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Secondary_Chorionic_Villus ] * ncithesaurus:Secondary_Chorionic_Villus ## Subsets @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0010194.md b/md/UBERON/94/UBERON_0010194.md index 30e64354cb..59035127ca 100644 --- a/md/UBERON/94/UBERON_0010194.md +++ b/md/UBERON/94/UBERON_0010194.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010194 * *Label* = hepatic portal system - * *Definition* = A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * hepatic-portal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010225] + * hepatic-portal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010225 ] * portal system of liver ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the circulatory system which includes the ventral abdominal vein, pelvic veins, and portal vein and collects blood from the pelvic region, liver, gall bladder and stomach.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0010294.md b/md/UBERON/94/UBERON_0010294.md index b96edac105..bbfaf7c129 100644 --- a/md/UBERON/94/UBERON_0010294.md +++ b/md/UBERON/94/UBERON_0010294.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010294 * *Label* = scleral endothelium - * *Definition* = An endothelium that is part of a sclera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a sclera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sclera](../../UBERON/73/UBERON_0001773.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0010394.md b/md/UBERON/94/UBERON_0010394.md index 688558a81a..992c130aca 100644 --- a/md/UBERON/94/UBERON_0010394.md +++ b/md/UBERON/94/UBERON_0010394.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0010894.md b/md/UBERON/94/UBERON_0010894.md index a7561fcf0e..ab6ac3f79b 100644 --- a/md/UBERON/94/UBERON_0010894.md +++ b/md/UBERON/94/UBERON_0010894.md @@ -7,7 +7,7 @@ ## Synonyms - * horny denticle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/Hyperoartia] + * horny denticle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/Hyperoartia ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0010994.md b/md/UBERON/94/UBERON_0010994.md index 6f5bcd1368..0dbbc17be6 100644 --- a/md/UBERON/94/UBERON_0010994.md +++ b/md/UBERON/94/UBERON_0010994.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010994 * *Label* = coronoid process of ulna - * *Definition* = The coronoid process is a triangular eminence projecting forward from the upper and front part of the ulna. Its base is continuous with the body of the bone, and of considerable strength. Its apex is pointed, slightly curved upward, and in flexion of the forearm is received into the coronoid fossa of the humerus. Its upper surface is smooth, concave, and forms the lower part of the semilunar notch. Its antero-inferior surface is concave, and marked by a rough impression for the insertion of the Brachialis muscle. At the junction of this surface with the front of the body is a rough eminence, the tuberosity of the ulna, which gives insertion to a part of the Brachialis; to the lateral border of this tuberosity the oblique cord is attached. Its lateral surface presents a narrow, oblong, articular depression, the radial notch. Its medial surface, by its prominent, free margin, serves for the attachment of part of the ulnar collateral ligament. At the front part of this surface is a small rounded eminence for the origin of one head of the Flexor digitorum superficialis muscle; behind the eminence is a depression for part of the origin of the Flexor digitorum profundus muscle; descending from the eminence is a ridge which gives origin to one head of the Pronator teres muscle. Frequently, the Flexor pollicis longus muscle arises from the lower part of the coronoid process by a rounded bundle of muscular fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronoid_process_of_the_ulna] + * *Definition* = The coronoid process is a triangular eminence projecting forward from the upper and front part of the ulna. Its base is continuous with the body of the bone, and of considerable strength. Its apex is pointed, slightly curved upward, and in flexion of the forearm is received into the coronoid fossa of the humerus. Its upper surface is smooth, concave, and forms the lower part of the semilunar notch. Its antero-inferior surface is concave, and marked by a rough impression for the insertion of the Brachialis muscle. At the junction of this surface with the front of the body is a rough eminence, the tuberosity of the ulna, which gives insertion to a part of the Brachialis; to the lateral border of this tuberosity the oblique cord is attached. Its lateral surface presents a narrow, oblong, articular depression, the radial notch. Its medial surface, by its prominent, free margin, serves for the attachment of part of the ulnar collateral ligament. At the front part of this surface is a small rounded eminence for the origin of one head of the Flexor digitorum superficialis muscle; behind the eminence is a depression for part of the origin of the Flexor digitorum profundus muscle; descending from the eminence is a ridge which gives origin to one head of the Pronator teres muscle. Frequently, the Flexor pollicis longus muscle arises from the lower part of the coronoid process by a rounded bundle of muscular fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronoid_process_of_the_ulna ] ## Synonyms - * coronoid process of the ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronoid_process_of_the_ulna] - * processus coronoideus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23616] + * coronoid process of the ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronoid_process_of_the_ulna ] + * processus coronoideus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23616 ] * ulnar coronoid process - * coronoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23616] - * processus coronoideus ulnae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coronoid_process_of_the_ulna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * coronoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23616 ] + * processus coronoideus ulnae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coronoid_process_of_the_ulna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010994 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011094.md b/md/UBERON/94/UBERON_0011094.md index 3da931490b..8fcf6a6311 100644 --- a/md/UBERON/94/UBERON_0011094.md +++ b/md/UBERON/94/UBERON_0011094.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011094 * *Label* = vertebra cartilage element - * *Definition* = A cartilaginous condensation that is part of a vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cartilaginous condensation that is part of a vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups ## Synonyms - * vertebral cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000584] + * vertebral cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000584 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilaginous condensation](../../UBERON/63/UBERON_0005863.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vertebral column](../../UBERON/30/UBERON_0001130.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011194.md b/md/UBERON/94/UBERON_0011194.md index 046108cb6c..443c34a997 100644 --- a/md/UBERON/94/UBERON_0011194.md +++ b/md/UBERON/94/UBERON_0011194.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011194 * *Label* = ophthalmic plexus - * *Definition* = An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.encyclo.co.uk/define/ophthalmic%20plexus] + * *Definition* = An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.encyclo.co.uk/define/ophthalmic%20plexus ] ## Synonyms * ophthalmic nerve plexus - * ophthalmic plexus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002185] + * ophthalmic plexus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002185 ] * opthalmic plexus - * plexus ophthalmicus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * plexus ophthalmicus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * MA:0002185 - * UMLS:C1709326 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ophthalmic_Plexus] + * UMLS:C1709326 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ophthalmic_Plexus ] * ncithesaurus:Ophthalmic_Plexus ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011594.md b/md/UBERON/94/UBERON_0011594.md index 35c29811c6..0d611b1985 100644 --- a/md/UBERON/94/UBERON_0011594.md +++ b/md/UBERON/94/UBERON_0011594.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011594 * *Label* = dentary tooth - * *Definition* = Tooth that is attached to a dentary/mandible[TAO,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001628] + * *Definition* = Tooth that is attached to a dentary/mandible[TAO,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001628 ] * *Comment* = Editor notes: Note that we treat dentary tooth and mandibular tooth as equivalent ## Synonyms - * mandibular teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000641[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * mandibular teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000641, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * mandibular tooth * tooth of dentary @@ -30,7 +30,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [dentary](../../UBERON/42/UBERON_0004742.md) and [calcareous tooth](../../UBERON/91/UBERON_0001091.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Tooth that is attached to the dentary.[TAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of dentary tooth row (TAO:0001952)[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011694.md b/md/UBERON/94/UBERON_0011694.md index b377df7d37..681a8fe67d 100644 --- a/md/UBERON/94/UBERON_0011694.md +++ b/md/UBERON/94/UBERON_0011694.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011694 * *Label* = embryo portion of umbilical artery - * *Definition* = Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000599] + * *Definition* = Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000599 ] ## Synonyms - * embryonic umbilical artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000599] + * embryonic umbilical artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000599 ] ## Cross-references @@ -31,8 +31,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011794.md b/md/UBERON/94/UBERON_0011794.md index c1a7a2f7c2..b5d234d5cc 100644 --- a/md/UBERON/94/UBERON_0011794.md +++ b/md/UBERON/94/UBERON_0011794.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011794 * *Label* = rectrix feather - * *Definition* = A flight feather that lies along a single horizontal row on the rear margin of the anatomical tail. Only the central pair are attached (via ligaments) to the tail bones; the remaining rectrices are embedded into the rectricial bulbs, complex structures of fat and muscle that surround those bones. Rectrices are always paired, with a vast majority of species having six pairs. They are absent in grebes and some ratites, and greatly reduced in size in penguins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather#Rectrices] + * *Definition* = A flight feather that lies along a single horizontal row on the rear margin of the anatomical tail. Only the central pair are attached (via ligaments) to the tail bones; the remaining rectrices are embedded into the rectricial bulbs, complex structures of fat and muscle that surround those bones. Rectrices are always paired, with a vast majority of species having six pairs. They are absent in grebes and some ratites, and greatly reduced in size in penguins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather#Rectrices ] ## Synonyms - * rectrices [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * rectrices [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * rectrix - * retrices [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * retrices [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * retrix * retrix feather @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [flight feather](../../UBERON/93/UBERON_0011793.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tail](../../UBERON/15/UBERON_0002415.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0011894.md b/md/UBERON/94/UBERON_0011894.md index 6484119038..9fe0e6824e 100644 --- a/md/UBERON/94/UBERON_0011894.md +++ b/md/UBERON/94/UBERON_0011894.md @@ -6,7 +6,7 @@ ## Synonyms - * vaginal lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19982] + * vaginal lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19982 ] ## Cross-references @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ cavity](../../UBERON/58/UBERON_0002558.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011894 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0012194.md b/md/UBERON/94/UBERON_0012194.md index 76f029b98f..39c73a391b 100644 --- a/md/UBERON/94/UBERON_0012194.md +++ b/md/UBERON/94/UBERON_0012194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012194 * *Label* = superior intercostal vein - * *Definition* = The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_intercostal_vein] + * *Definition* = The superior intercostal veins are two veins that drain the 2nd, 3rd, and 4th intercostal spaces, one vein for each side of the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_intercostal_vein ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0002226 - * UMLS:C1515066 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Intercostal_Vein] + * UMLS:C1515066 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Intercostal_Vein ] * Wikipedia:Superior_intercostal_vein * ncithesaurus:Superior_Intercostal_Vein @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0012294.md b/md/UBERON/94/UBERON_0012294.md index 831c434c5e..df15cd75ac 100644 --- a/md/UBERON/94/UBERON_0012294.md +++ b/md/UBERON/94/UBERON_0012294.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012294 * *Label* = navicular fossa of spongiose part of urethra - * *Definition* = The dilated terminal portion of the male spongy urethra located in the glans penis right before the external urethral orifice, also referred to as the most distal pendulous urethra; it is lined by stratified squamous, non-keratinizing epithelium; during development, the glans of the penis is initially solid but cannulates to give rise to the navicular fossa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011838[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navicular_fossa_of_male_urethra] + * *Definition* = The dilated terminal portion of the male spongy urethra located in the glans penis right before the external urethral orifice, also referred to as the most distal pendulous urethra; it is lined by stratified squamous, non-keratinizing epithelium; during development, the glans of the penis is initially solid but cannulates to give rise to the navicular fossa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011838, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navicular_fossa_of_male_urethra ] ## Synonyms * fossa navicularis of urethra - * fossa navicularis urethrae (pars spongiosa, urethra masculina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19722] - * fossa navicularis urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * navicular fossa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19722] + * fossa navicularis urethrae (pars spongiosa, urethra masculina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19722 ] + * fossa navicularis urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * navicular fossa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19722 ] * navicular fossa of urethra - * fossa navicularis urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Navicular_fossa_of_male_urethra] + * fossa navicularis urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Navicular_fossa_of_male_urethra ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012294 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0012494.md b/md/UBERON/94/UBERON_0012494.md index 02485a1488..dd97f1092e 100644 --- a/md/UBERON/94/UBERON_0012494.md +++ b/md/UBERON/94/UBERON_0012494.md @@ -6,7 +6,7 @@ ## Synonyms - * lamina muscularis of duodenal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15059] + * lamina muscularis of duodenal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15059 ] * lamina muscularis of duodenum ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0013194.md b/md/UBERON/94/UBERON_0013194.md index 1439530c23..65750c8afb 100644 --- a/md/UBERON/94/UBERON_0013194.md +++ b/md/UBERON/94/UBERON_0013194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013194 * *Label* = orthokeratinized epithelium - * *Definition* = A keratinized epithelium in which the cells of the stratum corneum become very flat, loose their nuclei and cytoplasmic organelles and are now composed of densely packed tonofilaments cemented by filaggrin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html] + * *Definition* = A keratinized epithelium in which the cells of the stratum corneum become very flat, loose their nuclei and cytoplasmic organelles and are now composed of densely packed tonofilaments cemented by filaggrin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.dental.pitt.edu/informatics/periohistology/en/glossary.html ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013194 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0013494.md b/md/UBERON/94/UBERON_0013494.md index 7b2d836970..d716d5494f 100644 --- a/md/UBERON/94/UBERON_0013494.md +++ b/md/UBERON/94/UBERON_0013494.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013494 * *Label* = keratin-coated spine - * *Definition* = A modified strand of hair covered in a keratin coat, as found in porcupines and hedgehogs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A modified strand of hair covered in a keratin coat, as found in porcupines and hedgehogs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [keratin filament](../../GO/95/GO_0045095.md) and [spine appendage](../../UBERON/60/UBERON_0008260.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013494 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0013594.md b/md/UBERON/94/UBERON_0013594.md index e560c493a4..814e7b79fc 100644 --- a/md/UBERON/94/UBERON_0013594.md +++ b/md/UBERON/94/UBERON_0013594.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0013694.md b/md/UBERON/94/UBERON_0013694.md index b381035b15..035979ee94 100644 --- a/md/UBERON/94/UBERON_0013694.md +++ b/md/UBERON/94/UBERON_0013694.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013694 * *Label* = brain endothelium - * *Definition* = Vascular endothelium found in blood vessels of the blood-brain-barrier. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0092] + * *Definition* = Vascular endothelium found in blood vessels of the blood-brain-barrier. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0092 ] ## Synonyms - * cerebromicrovascular endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0092] + * cerebromicrovascular endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0092 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0014394.md b/md/UBERON/94/UBERON_0014394.md index 43cc41bb40..160fb88e41 100644 --- a/md/UBERON/94/UBERON_0014394.md +++ b/md/UBERON/94/UBERON_0014394.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014394 * *Label* = uterine fat pad - * *Definition* = Encapsulated adipose tissue associated with the uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008900] + * *Definition* = Encapsulated adipose tissue associated with the uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008900 ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fat pad](../../UBERON/16/UBERON_0003916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014394 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0014594.md b/md/UBERON/94/UBERON_0014594.md index a573c8b307..3517b6d633 100644 --- a/md/UBERON/94/UBERON_0014594.md +++ b/md/UBERON/94/UBERON_0014594.md @@ -6,8 +6,8 @@ ## Synonyms - * tuberomammillary nucleus ventral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * TMv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1294[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * tuberomammillary nucleus ventral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * TMv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1294, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014594 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0014694.md b/md/UBERON/94/UBERON_0014694.md index bfc11b9276..f2d59dfa0d 100644 --- a/md/UBERON/94/UBERON_0014694.md +++ b/md/UBERON/94/UBERON_0014694.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014694 * *Label* = posterior auricular artery - * *Definition* = The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_auricular_artery] + * *Definition* = The posterior auricular artery is a small artery and arises from the external carotid artery, above the Digastric muscle and Stylohyoid muscle, opposite the apex of the styloid process. It ascends posteriorly beneath the parotid gland, along the styloid process of the temporal bone, between the cartilage of the ear and the mastoid process of the temporal bone along the lateral side of the head. The posterior auricular artery supplies blood to the scalp posterior to the auricle and to the auricle itself. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_auricular_artery ] ## Synonyms @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014694 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0014794.md b/md/UBERON/94/UBERON_0014794.md index b0b88ef88c..789434b33a 100644 --- a/md/UBERON/94/UBERON_0014794.md +++ b/md/UBERON/94/UBERON_0014794.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014794 * *Label* = pectoral appendage muscle - * *Definition* = A muscle organ that is part of a pectoral appendage (forelimb or pectoral fin). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a pectoral appendage (forelimb or pectoral fin). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage](../../UBERON/10/UBERON_0004710.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014794 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_0015094.md b/md/UBERON/94/UBERON_0015094.md index 3aa0e861b9..4dd75083f4 100644 --- a/md/UBERON/94/UBERON_0015094.md +++ b/md/UBERON/94/UBERON_0015094.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal bone 4 endochondral element](../../UBERON/93/UBERON_0015093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015094 + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000194.md b/md/UBERON/94/UBERON_2000194.md index 10f4b39574..45c36c00e7 100644 --- a/md/UBERON/94/UBERON_2000194.md +++ b/md/UBERON/94/UBERON_2000194.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000294.md b/md/UBERON/94/UBERON_2000294.md index d48c1b9536..a2685966ca 100644 --- a/md/UBERON/94/UBERON_2000294.md +++ b/md/UBERON/94/UBERON_2000294.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000394.md b/md/UBERON/94/UBERON_2000394.md index 6742735f42..966d6f9015 100644 --- a/md/UBERON/94/UBERON_2000394.md +++ b/md/UBERON/94/UBERON_2000394.md @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000594.md b/md/UBERON/94/UBERON_2000594.md index 1490e8abf4..02794686d7 100644 --- a/md/UBERON/94/UBERON_2000594.md +++ b/md/UBERON/94/UBERON_2000594.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000594 * *Label* = supracleithrum - * *Definition* = Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. ## Synonyms - * hypercleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000131] - * supracleithra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000594[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * supracleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000164] - * ?piclithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000132] + * hypercleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000131 ] + * supracleithra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000594, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * supracleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000164 ] + * ?piclithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000132 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000694.md b/md/UBERON/94/UBERON_2000694.md index 00bcb52595..334d649b67 100644 --- a/md/UBERON/94/UBERON_2000694.md +++ b/md/UBERON/94/UBERON_2000694.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000694 * *Label* = ceratobranchial 5 tooth - * *Definition* = Tooth that forms on ceratobranchial 5 cartilage or bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Tooth that forms on ceratobranchial 5 cartilage or bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. ## Synonyms - * pharyngeal teeth [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000694] + * pharyngeal teeth [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000694 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [core#attaches_to](../../core#attaches/to/core#attaches_to.md) some [ceratobranchial 5 bone](../../UBERON/39/UBERON_2001239.md) ## Other Logical Axioms @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2000794.md b/md/UBERON/94/UBERON_2000794.md index 47dfe98707..5efc81843e 100644 --- a/md/UBERON/94/UBERON_2000794.md +++ b/md/UBERON/94/UBERON_2000794.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 22 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000794[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 22 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000794, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/94/UBERON_2000894.md b/md/UBERON/94/UBERON_2000894.md index a30c3e6491..5afdf47c99 100644 --- a/md/UBERON/94/UBERON_2000894.md +++ b/md/UBERON/94/UBERON_2000894.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000894 * *Label* = hypaxial region somite 15 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001394.md b/md/UBERON/94/UBERON_2001394.md index a41f535849..79287a0beb 100644 --- a/md/UBERON/94/UBERON_2001394.md +++ b/md/UBERON/94/UBERON_2001394.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001394 * *Label* = neural arch 3 - * *Definition* = Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001594.md b/md/UBERON/94/UBERON_2001594.md index 62896fa621..2d55682a87 100644 --- a/md/UBERON/94/UBERON_2001594.md +++ b/md/UBERON/94/UBERON_2001594.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001594 * *Label* = caudal fin lower lobe - * *Definition* = Surface structure that is the ventral portion of the caudal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is the ventral portion of the caudal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * caudal fin ventral lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001594] + * caudal fin ventral lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001594 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001694.md b/md/UBERON/94/UBERON_2001694.md index b32685b446..1a6ecfadc0 100644 --- a/md/UBERON/94/UBERON_2001694.md +++ b/md/UBERON/94/UBERON_2001694.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001694 * *Label* = humerovertebral ligament - * *Definition* = Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Recorded in siluriform families Aspredinidae, Amblycipitidae, Akysidae, Sisoridae and Erethistidae (dePinna 1996). Submitted by Mario de Pinna. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001794.md b/md/UBERON/94/UBERON_2001794.md index 15daec74c7..c98843638c 100644 --- a/md/UBERON/94/UBERON_2001794.md +++ b/md/UBERON/94/UBERON_2001794.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001794 * *Label* = orbitosphenoid-prootic joint - * *Definition* = Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [core#connects](../../ts/core#connects.md) some [orbitosphenoid](../../UBERON/78/UBERON_0002478.md) and [core#connects](../../ts/core#connects.md) some [prootic bone](../../UBERON/46/UBERON_0004746.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001894.md b/md/UBERON/94/UBERON_2001894.md index f83029b50a..af8b019007 100644 --- a/md/UBERON/94/UBERON_2001894.md +++ b/md/UBERON/94/UBERON_2001894.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001894 * *Label* = hypobranchial 1 element - * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 1 element laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2001994.md b/md/UBERON/94/UBERON_2001994.md index e407e20f82..637a78e5d2 100644 --- a/md/UBERON/94/UBERON_2001994.md +++ b/md/UBERON/94/UBERON_2001994.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001994 * *Label* = gill raker row - * *Definition* = Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2002094.md b/md/UBERON/94/UBERON_2002094.md index 72bc7f9dc4..ae6fe68d5e 100644 --- a/md/UBERON/94/UBERON_2002094.md +++ b/md/UBERON/94/UBERON_2002094.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002094 * *Label* = dorsal fin pterygiophore 1 - * *Definition* = Dorsal fin pterygiophore that is the anteriormost pterygiophore of the dorsal fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dorsal fin pterygiophore that is the anteriormost pterygiophore of the dorsal fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2002294.md b/md/UBERON/94/UBERON_2002294.md index abf20993b1..d4c67c5f6b 100644 --- a/md/UBERON/94/UBERON_2002294.md +++ b/md/UBERON/94/UBERON_2002294.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002294 * *Label* = fish scute - * *Definition* = Dermal bone that is an unpaired, scale-like structure. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000171[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that is an unpaired, scale-like structure. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000171, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = temporarily relabeled 'fish scute' to distinguish from reptilian scute class. To DO: reconcile definitions for the two sets of classes. ## Synonyms - * ridge scale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002294] + * ridge scale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002294 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_2005194.md b/md/UBERON/94/UBERON_2005194.md index bd933d5ffb..23c278a18a 100644 --- a/md/UBERON/94/UBERON_2005194.md +++ b/md/UBERON/94/UBERON_2005194.md @@ -8,7 +8,7 @@ ## Synonyms - * rostral lateral 1 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005194] + * rostral lateral 1 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005194 ] ## Cross-references @@ -30,8 +30,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/94/UBERON_3000294.md b/md/UBERON/94/UBERON_3000294.md index 192b8b8afb..b04fe4389c 100644 --- a/md/UBERON/94/UBERON_3000294.md +++ b/md/UBERON/94/UBERON_3000294.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000294 * *Label* = median prenasal process - * *Definition* = Anterior projection of the septum nasi that protrudes through the anterior nasal wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Anterior projection of the septum nasi that protrudes through the anterior nasal wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * processus prenasalis medius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000294] + * processus prenasalis medius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000294 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000394.md b/md/UBERON/94/UBERON_3000394.md index 89a5bcdc60..3aa9facf74 100644 --- a/md/UBERON/94/UBERON_3000394.md +++ b/md/UBERON/94/UBERON_3000394.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000394 * *Label* = pars articularis of mandibular arch - * *Definition* = Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000494.md b/md/UBERON/94/UBERON_3000494.md index c26dcbed27..a333ebde58 100644 --- a/md/UBERON/94/UBERON_3000494.md +++ b/md/UBERON/94/UBERON_3000494.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000494 * *Label* = processus lingualis of pterygoid - * *Definition* = Dorsolateral process of the of the medial ramus of the pterygoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Dorsolateral process of the of the medial ramus of the pterygoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000694.md b/md/UBERON/94/UBERON_3000694.md index 25834fdfd3..90861ffedc 100644 --- a/md/UBERON/94/UBERON_3000694.md +++ b/md/UBERON/94/UBERON_3000694.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000694 * *Label* = atlantal cotyle - * *Definition* = Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Francis_1934] + * *Definition* = Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Francis_1934 ] ## Synonyms - * cavitas glenoidalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000694] + * cavitas glenoidalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000694 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000794.md b/md/UBERON/94/UBERON_3000794.md index a87c7e5843..a06decf052 100644 --- a/md/UBERON/94/UBERON_3000794.md +++ b/md/UBERON/94/UBERON_3000794.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000794 * *Label* = displasiocoelous - * *Definition* = Vertebral column in which the first seven vertebrae have holochordal centra and the intervertebral cartilages are posteriorly subdivided in the procoelous manner. The eighth presacral vertebra has a holochordal centrum and the intervertebral cartilage is subdivided in the opisthocoelous manner. Thus, the first seven presacral vertebrae are concave anteriorly and convex posteriorly, whereas the eighth is biconcave. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Vertebral column in which the first seven vertebrae have holochordal centra and the intervertebral cartilages are posteriorly subdivided in the procoelous manner. The eighth presacral vertebra has a holochordal centrum and the intervertebral cartilage is subdivided in the opisthocoelous manner. Thus, the first seven presacral vertebrae are concave anteriorly and convex posteriorly, whereas the eighth is biconcave. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000894.md b/md/UBERON/94/UBERON_3000894.md index 7e89b7d683..6df78fd7a1 100644 --- a/md/UBERON/94/UBERON_3000894.md +++ b/md/UBERON/94/UBERON_3000894.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000894 * *Label* = femoral ridge - * *Definition* = Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * crista femoris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000894] + * crista femoris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000894 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3000994.md b/md/UBERON/94/UBERON_3000994.md index bf88b4fa0d..e332583246 100644 --- a/md/UBERON/94/UBERON_3000994.md +++ b/md/UBERON/94/UBERON_3000994.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010094.md b/md/UBERON/94/UBERON_3010094.md index 337918f563..c2a2e3105b 100644 --- a/md/UBERON/94/UBERON_3010094.md +++ b/md/UBERON/94/UBERON_3010094.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010094 * *Label* = quadratoethmoid process - * *Definition* = Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010194.md b/md/UBERON/94/UBERON_3010194.md index 14f4402d83..451a69b1f5 100644 --- a/md/UBERON/94/UBERON_3010194.md +++ b/md/UBERON/94/UBERON_3010194.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010194 * *Label* = mediale - * *Definition* = A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010394.md b/md/UBERON/94/UBERON_3010394.md index 41ed9d9eb1..405c041e3b 100644 --- a/md/UBERON/94/UBERON_3010394.md +++ b/md/UBERON/94/UBERON_3010394.md @@ -6,11 +6,11 @@ ## Synonyms - * PT3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010394] - * late proximal segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010394] - * proximal tubule 3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010394] - * opisthonephros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010394] - * proximal straight segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010394] + * PT3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010394 ] + * late proximal segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010394 ] + * proximal tubule 3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010394 ] + * opisthonephros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010394 ] + * proximal straight segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010394 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010494.md b/md/UBERON/94/UBERON_3010494.md index 2edc926ff9..aa0ad04805 100644 --- a/md/UBERON/94/UBERON_3010494.md +++ b/md/UBERON/94/UBERON_3010494.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010494 * *Label* = lateral pretrosal artery - * *Definition* = Part of the internal carotid which supplies blood to the ear and branches to two additional arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Part of the internal carotid which supplies blood to the ear and branches to two additional arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010694.md b/md/UBERON/94/UBERON_3010694.md index 608835489b..802afc081c 100644 --- a/md/UBERON/94/UBERON_3010694.md +++ b/md/UBERON/94/UBERON_3010694.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010694 * *Label* = m. rhomboideus posterior - * *Definition* = Muscle which originates from the transverse process of presacral vertebrae IV and insert on the dorso-medial surface of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the transverse process of presacral vertebrae IV and insert on the dorso-medial surface of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_3010794.md b/md/UBERON/94/UBERON_3010794.md index ad551ce9da..2126b5219a 100644 --- a/md/UBERON/94/UBERON_3010794.md +++ b/md/UBERON/94/UBERON_3010794.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010794 * *Label* = oral ramule - * *Definition* = Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Medial branch of the ramus mandibularis externus. This ramule innervates the oral and angular lines of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/94/UBERON_4200094.md b/md/UBERON/94/UBERON_4200094.md index 78155895f0..0a75be4560 100644 --- a/md/UBERON/94/UBERON_4200094.md +++ b/md/UBERON/94/UBERON_4200094.md @@ -28,7 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0000095.md b/md/UBERON/95/UBERON_0000095.md index b52039781b..3ab2c13b73 100644 --- a/md/UBERON/95/UBERON_0000095.md +++ b/md/UBERON/95/UBERON_0000095.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000095 * *Label* = cardiac neural crest - * *Definition* = portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_neural_crest] + * *Definition* = portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_neural_crest ] * *Comment* = AO notes - ZFA treats this as a subtype of NC. ## Synonyms - * cardiac neural crest complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_neural_crest] - * complexus cristae neuralis cardiacus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cardiac_neural_crest] + * cardiac neural crest complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_neural_crest ] + * complexus cristae neuralis cardiacus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cardiac_neural_crest ] ## Cross-references @@ -27,7 +27,7 @@ * [ectoderm-derived structure](../../UBERON/21/UBERON_0004121.md) * [embryonic tissue](../../UBERON/91/UBERON_0005291.md) * [part_of](../../BFO/50/BFO_0000050.md) some [neural crest](../../UBERON/42/UBERON_0002342.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [vagal neural crest](../../UBERON/28/UBERON_0005428.md) ## Equivalencies @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A subpopulation of the cephalic neural crest that emerges from the otic level to the anterior limit of somite 4. It migrates to the heart and is essential for the septation of the outflow track[doi:10.1242/dev.091751]. * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = cjm * *[oboInOwl#creation_date](../../oboInOwl#creation/te/oboInOwl#creation_date.md)* = 2009-07-30T07:57:38Z - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0000395.md b/md/UBERON/95/UBERON_0000395.md index 121e815a9a..d6565dc011 100644 --- a/md/UBERON/95/UBERON_0000395.md +++ b/md/UBERON/95/UBERON_0000395.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000395 * *Label* = cochlear ganglion - * *Definition* = group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002855[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_ganglion] + * *Definition* = group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002855, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_ganglion ] * *Comment* = Editor notes: in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems ## Synonyms - * Corti's ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53445] - * ganglion of Corti [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53445] - * spiral ganglion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53445] - * vestibulocochlear VIII ganglion cochlear component [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001085] - * ganglion cochlearis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001688] - * ganglion spirale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Spiral_ganglion[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglion spirale cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001688] - * spiral ganglion of cochlea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001688] + * Corti's ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53445 ] + * ganglion of Corti [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53445 ] + * spiral ganglion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53445 ] + * vestibulocochlear VIII ganglion cochlear component [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001085 ] + * ganglion cochlearis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001688 ] + * ganglion spirale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Spiral_ganglion, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglion spirale cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001688 ] + * spiral ganglion of cochlea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001688 ] ## Cross-references @@ -53,8 +53,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0000995.md b/md/UBERON/95/UBERON_0000995.md index d01bd6e9a4..0eaeaeac2e 100644 --- a/md/UBERON/95/UBERON_0000995.md +++ b/md/UBERON/95/UBERON_0000995.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000995 * *Label* = uterus - * *Definition* = a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterus] + * *Definition* = a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterus ] * *Comment* = Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle "vagina" which functions as the birth canal. Marsupial embryos form a choriovitelline "placenta" (which can be thought of as something between a monotreme egg and a "true" placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream. ## Synonyms @@ -24,7 +24,7 @@ * MIAA:0000127 * OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA * SCTID:181452004 - * UMLS:C0042149 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Uterus] + * UMLS:C0042149 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Uterus ] * VHOG:0001137 * Wikipedia:Uterus * galen:Uterus @@ -57,8 +57,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = An infundibulum, uterine tube, uterus, and vagina also differentiate along the oviducts of eutherian mammals.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = uterine * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001095.md b/md/UBERON/95/UBERON_0001095.md index 66b1ea13fc..4945135447 100644 --- a/md/UBERON/95/UBERON_0001095.md +++ b/md/UBERON/95/UBERON_0001095.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001095 * *Label* = caudal vertebra - * *Definition* = bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Caudal_vertebra[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Caudal_vertebra, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * caudal vertebrae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * tail vertebra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000310] + * caudal vertebrae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * tail vertebra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000310 ] ## Cross-references @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal region of vertebral column](../../UBERON/76/UBERON_0006076.md) and [vertebra](../../UBERON/12/UBERON_0002412.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001195.md b/md/UBERON/95/UBERON_0001195.md index dd97f2e737..7040c3c817 100644 --- a/md/UBERON/95/UBERON_0001195.md +++ b/md/UBERON/95/UBERON_0001195.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001195 * *Label* = inferior pancreaticoduodenal artery - * *Definition* = The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pancreaticoduodenal_artery] + * *Definition* = The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pancreaticoduodenal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * inferior pancreatico-duodenal artery - * arteriae pancreaticoduodenales inferiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_pancreaticoduodenal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae pancreaticoduodenales inferiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_pancreaticoduodenal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14805 * MA:0002014 * SCTID:244273004 - * UMLS:C0226319 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Pancreatico-duodenal_artery] + * UMLS:C0226319 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Pancreatico-duodenal_artery ] * Wikipedia:Inferior_pancreaticoduodenal_artery * http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png * ncithesaurus:Inferior_Pancreatico-duodenal_artery @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001295.md b/md/UBERON/95/UBERON_0001295.md index addd11a863..b0d16a0812 100644 --- a/md/UBERON/95/UBERON_0001295.md +++ b/md/UBERON/95/UBERON_0001295.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001295 * *Label* = endometrium - * *Definition* = inner mucous membrane of the mammalian uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endometrium] + * *Definition* = inner mucous membrane of the mammalian uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endometrium ] * *Comment* = Taxon notes: Animals that have estrous cycles reabsorb the endometrium if conception does not occur during that cycle. Animals that have menstrual cycles shed the endometrium through menstruation instead. AO notes: in FMA this is subdivided into basal and outer. In MA there is a single child term, endometrium epithelium ## Synonyms - * tunica mucosa (endometrium) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17742] - * tunica mucosa uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endometrium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine endometrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001422] - * uterine mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001422] + * tunica mucosa (endometrium) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17742 ] + * tunica mucosa uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endometrium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine endometrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001422 ] + * uterine mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001422 ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A05.360.319.679.490 * MIAA:0000319 * SCTID:278867007 - * UMLS:C0014180 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endometrium] + * UMLS:C0014180 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endometrium ] * VHOG:0001285 * Wikipedia:Endometrium * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The maternal part of the placenta (of eutherian mammals) is the vascularized and glandular uterine lining, or endometrium.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = endometrial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001395.md b/md/UBERON/95/UBERON_0001395.md index 8dd47f0585..49bc58e394 100644 --- a/md/UBERON/95/UBERON_0001395.md +++ b/md/UBERON/95/UBERON_0001395.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001395 * *Label* = thoraco-acromial artery - * *Definition* = The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thoraco-acromial_artery] + * *Definition* = The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thoraco-acromial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -16,7 +16,7 @@ * FMA:22671 * MA:0002064 * SCTID:244315002 - * UMLS:C0226420 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Acromial_Thoracic_Artery] + * UMLS:C0226420 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Acromial_Thoracic_Artery ] * Wikipedia:Thoraco-acromial_artery * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG * ncithesaurus:Acromial_Thoracic_Artery @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001495.md b/md/UBERON/95/UBERON_0001495.md index deb2d8b08e..9d29bdc035 100644 --- a/md/UBERON/95/UBERON_0001495.md +++ b/md/UBERON/95/UBERON_0001495.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001495 * *Label* = pectoral muscle - * *Definition* = Muscles of the upper chest. The term may refer to one of two muscles, the pectoralis major and pectoralis minor. The former is a thick muscle in the anterior portion of the chest. Its action involves flexion, medial rotation, and adduction of the humerus. The latter is a thin muscle located beneath the pectoralis major. Its action involves lowering the scapula and raising the ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Pectoralis_Muscle] + * *Definition* = Muscles of the upper chest. The term may refer to one of two muscles, the pectoralis major and pectoralis minor. The former is a thick muscle in the anterior portion of the chest. Its action involves flexion, medial rotation, and adduction of the humerus. The latter is a thin muscle located beneath the pectoralis major. Its action involves lowering the scapula and raising the ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Pectoralis_Muscle ] * *Comment* = This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus ## Synonyms - * M. pectoralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010727] - * muscle of pectoral part of chest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37349] - * muscle of pectoral region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37349] - * breast muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000023] + * M. pectoralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010727 ] + * muscle of pectoral part of chest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37349 ] + * muscle of pectoral region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37349 ] + * breast muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000023 ] * pectoralis * pectoralis group muscle - * pectoralis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000023] + * pectoralis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000023 ] ## Cross-references @@ -26,7 +26,7 @@ * MA:0002423 * MESH:A02.633.567.775 * SCTID:181621006 - * UMLS:C0030747 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pectoralis_Muscle] + * UMLS:C0030747 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pectoralis_Muscle ] * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png * ncithesaurus:Pectoralis_Muscle @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001595.md b/md/UBERON/95/UBERON_0001595.md index 06786b0026..11aac4bbf0 100644 --- a/md/UBERON/95/UBERON_0001595.md +++ b/md/UBERON/95/UBERON_0001595.md @@ -7,15 +7,15 @@ ## Synonyms * muscle of auricle - * attolens aurem muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * attrahens aurem muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auriculares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auriculares anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auriculares muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auricularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auricularis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * auricularis muscles [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] - * temporoparietalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Auricular_muscles] + * attolens aurem muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * attrahens aurem muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auriculares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auriculares anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auriculares muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auricularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auricularis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * auricularis muscles [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] + * temporoparietalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Auricular_muscles ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001695.md b/md/UBERON/95/UBERON_0001695.md index f017dab40b..216b22ac09 100644 --- a/md/UBERON/95/UBERON_0001695.md +++ b/md/UBERON/95/UBERON_0001695.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001695 * *Label* = squamous part of temporal bone - * *Definition* = A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004423[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_temporalis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squamosal_bone] + * *Definition* = A bone which is fused with the temporal bone in many mammals and forms part of the cheek region articulating with quadrate and pterygoid in other vertebrates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004423, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_temporalis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squamosal_bone ] * *Comment* = Taxon notes: The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles. Editor notes: consider separate class for squamosal OR making squamosal the primary label ## Synonyms * pars squamosa (os temporale) - * squama temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_temporalis] - * squamosal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000574] - * squamosal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001473] + * squama temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_temporalis ] + * squamosal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000574 ] + * squamosal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001473 ] * squamous bone - * temporal bone squamous part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001561] + * temporal bone squamous part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001561 ] * squama - * squama temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Squama_temporalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * squama temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Squama_temporalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -54,8 +54,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001795.md b/md/UBERON/95/UBERON_0001795.md index 696614a687..874598cf99 100644 --- a/md/UBERON/95/UBERON_0001795.md +++ b/md/UBERON/95/UBERON_0001795.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001795 * *Label* = inner plexiform layer of retina - * *Definition* = Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005032] + * *Definition* = Cytoarchitectural layer of the retina that is made up of a dense reticulum of fibrils formed by interlaced dendrites of retinal ganglion cells and cells of the inner nuclear layer (adapted from Wikipedia) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005032 ] * *Comment* = BTO misspelling? ## Synonyms * retina inner plexiform layer * retinal inner plexiform layer - * stratum plexiforme internum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58704] + * stratum plexiforme internum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58704 ] * IPL - * inner plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003175] - * internal plexiform layer of retina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005032] - * retina, inner plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:Ripl] - * retinal internal plexiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1005032] - * stratum plexifome internum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003175] - * stratum plexiforme internum retinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inner_plexiform_layer[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inner plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003175 ] + * internal plexiform layer of retina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005032 ] + * retina, inner plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:Ripl ] + * retinal internal plexiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1005032 ] + * stratum plexifome internum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003175 ] + * stratum plexiforme internum retinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inner_plexiform_layer, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,7 +28,7 @@ * NIF_GrossAnatomy:nlx_anat_1005032 * SCTID:280682006 * TAO:0001329 - * UMLS:C0229221 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inner_Plexiform_Layer] + * UMLS:C0229221 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inner_Plexiform_Layer ] * VHOG:0001168 * Wikipedia:Inner_plexiform_layer * XAO:0003225 @@ -45,14 +45,14 @@ * [retinal neural layer](../../UBERON/02/UBERON_0003902.md) * [part_of](../../BFO/50/BFO_0000050.md) some [retinal neural layer](../../UBERON/02/UBERON_0003902.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [retinal ganglion cell](../../CL/40/CL_0000740.md) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [retinal bipolar neuron](../../CL/48/CL_0000748.md) * [adjacent to](../../RO/20/RO_0002220.md) some [inner nuclear layer of retina](../../UBERON/91/UBERON_0001791.md) * [adjacent to](../../RO/20/RO_0002220.md) some [ganglionic layer of retina](../../UBERON/92/UBERON_0001792.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [ganglionic layer of retina](../../UBERON/92/UBERON_0001792.md) and [adjacent to](../../RO/20/RO_0002220.md) some [inner nuclear layer of retina](../../UBERON/91/UBERON_0001791.md) and [layer of retina](../../UBERON/81/UBERON_0001781.md) ## Other Logical Axioms @@ -63,8 +63,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup. (...) The outer layer of the optic cup becomes the pigment layer of the retina, whereas the inner layer differentiates into the photoreceptive cells and neuronal layers of the retina.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001895.md b/md/UBERON/95/UBERON_0001895.md index b051d2f57e..a91270b3f1 100644 --- a/md/UBERON/95/UBERON_0001895.md +++ b/md/UBERON/95/UBERON_0001895.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001895 * *Label* = metencephalon - * *Definition* = Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metencephalon[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/300] + * *Definition* = Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum[WP,modified]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metencephalon, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/300 ] * *Comment* = the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA]. ## Synonyms - * epencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Epencephalon[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * epencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Epencephalon, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -23,9 +23,9 @@ * MA:0000197 * MESH:A08.186.211.132.810.428 * NIF_GrossAnatomy:birnlex_965 - * NeuroNames:543 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_965] - * UMLS:C0376353 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_965] - * UMLS:C1516904 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epencephalon] + * NeuroNames:543 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_965 ] + * UMLS:C0376353 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_965 ] + * UMLS:C1516904 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epencephalon ] * VHOG:0000741 * Wikipedia:Metencephalon * http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg @@ -56,8 +56,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG] * *[dubious_for_taxon](../../core#dubious/on/core#dubious_for_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7955 * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0001995.md b/md/UBERON/95/UBERON_0001995.md index d1e385e425..cb80fe48a2 100644 --- a/md/UBERON/95/UBERON_0001995.md +++ b/md/UBERON/95/UBERON_0001995.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001995 * *Label* = fibrocartilage - * *Definition* = Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000103[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000103, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = The white fibrocartilages admit of arrangement into four groupsinterarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized ## Synonyms @@ -14,7 +14,7 @@ * FMA:64784 * MA:0000108 * SCTID:91685003 - * UMLS:C0684077 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Fibrocartilage] + * UMLS:C0684077 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Fibrocartilage ] * VSAO:0000103 * Wikipedia:Fibrocartilage * XAO:0004028 @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA:64784]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns.[VSAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = fibrocartilaginous - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002095.md b/md/UBERON/95/UBERON_0002095.md index 7bdecf1097..5aaabd3e8d 100644 --- a/md/UBERON/95/UBERON_0002095.md +++ b/md/UBERON/95/UBERON_0002095.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002095 * *Label* = mesentery - * *Definition* = Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7144[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery#Mesentery_.28general.29] + * *Definition* = Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7144, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery#Mesentery_.28general.29 ] * *Comment* = Note that in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: "In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.". TODO - check. Consider FMA:259286 - Region of mesentery. ## Synonyms - * generic mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery] - * mesentery (generic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery] + * generic mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery ] + * mesentery (generic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery ] ## Cross-references @@ -20,7 +20,7 @@ * GAID:21 * MESH:A01.047.025.600.451 * SCTID:362707009 - * UMLS:C0025474 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Mesentery] + * UMLS:C0025474 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Mesentery ] * Wikipedia:Mesentery#Mesentery_.28general.29 * galen:Mesentery * http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png @@ -46,8 +46,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mesenteric - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002195.md b/md/UBERON/95/UBERON_0002195.md index 52cc1b0cbb..99423d987c 100644 --- a/md/UBERON/95/UBERON_0002195.md +++ b/md/UBERON/95/UBERON_0002195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002195 * *Label* = trabecula of lymph node - * *Definition* = Membranous process coming from capsule of lymph node[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lymph_node_trabeculae] + * *Definition* = Membranous process coming from capsule of lymph node[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lymph_node_trabeculae ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -15,7 +15,7 @@ * FMA:74605 * MA:0000746 - * UMLS:C1184179 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lymph_Node_Trabecula] + * UMLS:C1184179 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lymph_Node_Trabecula ] * Wikipedia:Lymph_node_trabeculae * http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray598.png/200px-Gray598.png * ncithesaurus:Lymph_Node_Trabecula @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002295.md b/md/UBERON/95/UBERON_0002295.md index 230f62aa68..2f759fb9ba 100644 --- a/md/UBERON/95/UBERON_0002295.md +++ b/md/UBERON/95/UBERON_0002295.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002295 * *Label* = scala media - * *Definition* = An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Scala_media] + * *Definition* = An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Scala_media ] * *Comment* = TODO: check cochlear duct vs cochlear aqueduct vs scala media ## Synonyms @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002395.md b/md/UBERON/95/UBERON_0002395.md index 699e408553..e541f0460a 100644 --- a/md/UBERON/95/UBERON_0002395.md +++ b/md/UBERON/95/UBERON_0002395.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002395 * *Label* = talus - * *Definition* = proximal tarsal bone resulting from fusion of intermedium and fibulare. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talus_bone] + * *Definition* = proximal tarsal bone resulting from fusion of intermedium and fibulare. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talus_bone ] * *Comment* = Taxon notes: The talus is apparently derived from the fusion of three separate bones in the feet of primitive amphibians; the tibiale, articulating with tibia, the intermedium, between the bases of the tibia and fibula, and the fourth centrale, lying in the mid-part of the tarsus. These bones are still partially separate in modern amphibians, which therefore do not have a true talus. The talus forms a considerably more flexible joint in mammals than it does in reptiles. This reaches its greatest extent in artiodactyls, where the distal surface of the bone has a smooth keel to allow greater freedom of movement of the foot, and thus increase running speed[WP] ## Synonyms - * astragaloid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002354] - * astragalus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:000135[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talus_bone] - * astragalus bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talus_bone] + * astragaloid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002354 ] + * astragalus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:000135, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talus_bone ] + * astragalus bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talus_bone ] * major ankle bone - * os tarsi tibiale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002354] - * os trigonum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Talus_bone] + * os tarsi tibiale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002354 ] + * os trigonum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Talus_bone ] ## Cross-references @@ -25,7 +25,7 @@ * MA:0001351 * MESH:A02.835.232.300.710.780 * SCTID:182098005 - * UMLS:C0039277 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Talus] + * UMLS:C0039277 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Talus ] * Wikipedia:Talus_bone * galen:Talus * http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG @@ -50,8 +50,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002495.md b/md/UBERON/95/UBERON_0002495.md index a24f2ad9e1..6214c253eb 100644 --- a/md/UBERON/95/UBERON_0002495.md +++ b/md/UBERON/95/UBERON_0002495.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002495 * *Label* = long bone - * *Definition* = Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO:wd]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:wd[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Long_bone] + * *Definition* = Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO:wd]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:wd, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Long_bone ] * *Comment* = Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251] ## Synonyms - * os longum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004256] + * os longum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004256 ] ## Cross-references @@ -17,7 +17,7 @@ * MA:0002802 * OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA * SCTID:332709000 - * UMLS:C0222647 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Long_Bone] + * UMLS:C0222647 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Long_Bone ] * Wikipedia:Long_bone * galen:LongBone * ncithesaurus:Long_Bone @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002595.md b/md/UBERON/95/UBERON_0002595.md index ddcb76da15..c8a4a3347f 100644 --- a/md/UBERON/95/UBERON_0002595.md +++ b/md/UBERON/95/UBERON_0002595.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002595 * *Label* = orbital sulcus - * *Definition* = The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbital_sulcus] + * *Definition* = The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbital_sulcus ] ## Synonyms - * cruciate sulcus of campbell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1112] - * orbital sulci [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83770[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * sulci orbitalis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1112] - * orbs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1112[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulci orbitales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:79[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cruciate sulcus of campbell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1112 ] + * orbital sulci [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83770, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * sulci orbitalis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1112 ] + * orbs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1112, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulci orbitales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:79, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,10 +21,10 @@ * BM:Tel-Cx-ORS * FMA:83770 * NIF_GrossAnatomy:birnlex_1112 - * NeuroNames:79 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1112] + * NeuroNames:79 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1112 ] * SCTID:314143008 - * UMLS:C0228206 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1112] - * UMLS:C0228206 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbital_Sulcus] + * UMLS:C0228206 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1112 ] + * UMLS:C0228206 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbital_Sulcus ] * Wikipedia:Orbital_sulcus * ncithesaurus:Orbital_Sulcus @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002695.md b/md/UBERON/95/UBERON_0002695.md index 2dfa340d70..3d182ef3a6 100644 --- a/md/UBERON/95/UBERON_0002695.md +++ b/md/UBERON/95/UBERON_0002695.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002695 * *Label* = parieto-occipital sulcus - * *Definition* = Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parieto-occipital_sulcus] + * *Definition* = Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parieto-occipital_sulcus ] * *Comment* = AO notes - two classes in ncit (in general ncit distinguishes between fissue and sulcus, whereas FMA treats these as exact synonyms) ## Synonyms - * fissura parieto-occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1428] - * parieto-occipital fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83754] - * parieto-occipital incisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83754] - * parietooccipital sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83754] - * sulcus parieto-occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1428] - * sulcus parieto-occipitalis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1428] - * sulcus parietoccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1428] - * sulcus parietooccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1428] - * pos [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fissura parietooccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parieto-occipital_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * posterior orbital sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:pos] - * sulcus parietooccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Parieto-occipital_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fissura parieto-occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1428 ] + * parieto-occipital fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83754 ] + * parieto-occipital incisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83754 ] + * parietooccipital sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83754 ] + * sulcus parieto-occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1428 ] + * sulcus parieto-occipitalis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1428 ] + * sulcus parietoccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1428 ] + * sulcus parietooccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1428 ] + * pos [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fissura parietooccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parieto-occipital_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * posterior orbital sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:pos ] + * sulcus parietooccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Parieto-occipital_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -28,11 +28,11 @@ * BM:Tel-Cx-POS * FMA:83754 * NIF_GrossAnatomy:birnlex_1428 - * NeuroNames:52 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1428] + * NeuroNames:52 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1428 ] * OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA * SCTID:279354009 - * UMLS:C0228191 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1428] - * UMLS:C1744592 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parieto-occipital_Fissure] + * UMLS:C0228191 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1428 ] + * UMLS:C1744592 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parieto-occipital_Fissure ] * Wikipedia:Parieto-occipital_sulcus * http://upload.wikimedia.org/wikipedia/commons/5/5d/Gray726_parieto-occipital_sulcus.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Gray726_parieto-occipital_sulcus.png/200px-Gray726_parieto-occipital_sulcus.png @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002795.md b/md/UBERON/95/UBERON_0002795.md index 91d69c228a..439d6f0c0e 100644 --- a/md/UBERON/95/UBERON_0002795.md +++ b/md/UBERON/95/UBERON_0002795.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002795 * *Label* = frontal pole - * *Definition* = Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1716] + * *Definition* = Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1716 ] ## Synonyms - * polus frontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:57[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * Frontal pole, cerebral cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:FRP] + * polus frontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:57, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * Frontal pole, cerebral cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:FRP ] ## Cross-references @@ -17,9 +17,9 @@ * BAMS:frp * FMA:74885 * NIF_GrossAnatomy:birnlex_1716 - * NeuroNames:57 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1716] + * NeuroNames:57 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1716 ] * SCTID:314144002 - * UMLS:C0149546 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1716] + * UMLS:C0149546 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1716 ] * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG ## Subsets @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [frontal cortex](../../UBERON/70/UBERON_0001870.md) and [pole of cerebral hemisphere](../../UBERON/99/UBERON_0009899.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002895.md b/md/UBERON/95/UBERON_0002895.md index bedf640afd..7dd4bf85f7 100644 --- a/md/UBERON/95/UBERON_0002895.md +++ b/md/UBERON/95/UBERON_0002895.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002895 * *Label* = secondary olfactory cortex - * *Definition* = Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2709] + * *Definition* = Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2709 ] * *Comment* = FMA considers this a syn of entorhinal cortex. See also brodman definition ## Synonyms - * secondary olfactory areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2709] - * secondary olfactory cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72356] + * secondary olfactory areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2709 ] + * secondary olfactory cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72356 ] * secondary olfactory cortical area (carpenter) - * entorhinal cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72356[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * entorhinal cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72356, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0002995.md b/md/UBERON/95/UBERON_0002995.md index 24344e26e3..9c3ea2e55e 100644 --- a/md/UBERON/95/UBERON_0002995.md +++ b/md/UBERON/95/UBERON_0002995.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002995 * *Label* = substantia nigra pars lateralis - * *Definition* = Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_866] - * *Comment* = disjointness violation - relationship: part_of UBERON:0001966 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF] + * *Definition* = Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_866 ] + * *Comment* = disjointness violation - relationship: part_of UBERON:0001966 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF ] ## Synonyms - * Substantia nigra, lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:SNI] - * lateral part of substantia nigra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76844] - * pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_866] - * internal capsule (Burdach) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:198] - * substantia nigra lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNL] - * substantia nigra lateral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNl] - * substantia nigra, lateral division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNL] - * substantia nigra, pars lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:SNL] + * Substantia nigra, lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:SNI ] + * lateral part of substantia nigra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76844 ] + * pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_866 ] + * internal capsule (Burdach) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:198 ] + * substantia nigra lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNL ] + * substantia nigra lateral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNl ] + * substantia nigra, lateral division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNL ] + * substantia nigra, pars lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:SNL ] ## Cross-references @@ -25,7 +25,7 @@ * FMA:76844 * MA:0001065 * NIF_GrossAnatomy:birnlex_866 - * NeuroNames:198 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_866] + * NeuroNames:198 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_866 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003095.md b/md/UBERON/95/UBERON_0003095.md index 99ca1d648a..70fde82923 100644 --- a/md/UBERON/95/UBERON_0003095.md +++ b/md/UBERON/95/UBERON_0003095.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003095 * *Label* = dorsal lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -37,8 +37,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003195.md b/md/UBERON/95/UBERON_0003195.md index ddd68c390a..4a15c5c452 100644 --- a/md/UBERON/95/UBERON_0003195.md +++ b/md/UBERON/95/UBERON_0003195.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004765 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000236 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003195 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_0003295.md b/md/UBERON/95/UBERON_0003295.md index 2343ef8a6d..fc1b2702d4 100644 --- a/md/UBERON/95/UBERON_0003295.md +++ b/md/UBERON/95/UBERON_0003295.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003295 * *Label* = pharyngeal gland - * *Definition* = Racemose mucous glands beneath the mucous membrane of the pharynx. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Biology-Online_Dictionary:http://www.biology-online.org/dictionary/] + * *Definition* = Racemose mucous glands beneath the mucous membrane of the pharynx. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Biology-Online_Dictionary:http://www.biology-online.org/dictionary/ ] ## Synonyms - * pharynx gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001461] - * glandulae pharyngeae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004849] + * pharynx gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001461 ] + * glandulae pharyngeae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004849 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chordate pharynx](../../UBERON/42/UBERON_0001042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003395.md b/md/UBERON/95/UBERON_0003395.md index 9e7f027515..d91dee55a7 100644 --- a/md/UBERON/95/UBERON_0003395.md +++ b/md/UBERON/95/UBERON_0003395.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003395 * *Label* = mesentery of rectum - * *Definition* = A mesentery that is part of a rectum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a rectum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * rectum mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * rectum mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003495.md b/md/UBERON/95/UBERON_0003495.md index ef20b78349..93a0aa00ef 100644 --- a/md/UBERON/95/UBERON_0003495.md +++ b/md/UBERON/95/UBERON_0003495.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003495 * *Label* = respiratory system arteriole - * *Definition* = An arteriole that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arteriole that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arteriole](../../UBERON/80/UBERON_0001980.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003595.md b/md/UBERON/95/UBERON_0003595.md index dcebf0bde5..bf420dbd92 100644 --- a/md/UBERON/95/UBERON_0003595.md +++ b/md/UBERON/95/UBERON_0003595.md @@ -3,118 +3,118 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003595 * *Label* = pes connective tissue - * *Definition* = A portion of connective tissue that is part of a foot [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a foot [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * autopod of hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000644] - * foot portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * foot textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autopod of hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000644 ] + * foot portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * foot textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -130,15 +130,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003695.md b/md/UBERON/95/UBERON_0003695.md index 50438d56ea..717cd18a43 100644 --- a/md/UBERON/95/UBERON_0003695.md +++ b/md/UBERON/95/UBERON_0003695.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003695 * *Label* = metacarpophalangeal joint - * *Definition* = The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metacarpophalangeal_joint] + * *Definition* = The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metacarpophalangeal_joint ] * *Comment* = Editor notes: we follow FMA in making these joints part of digits. We include carpometacarpophalangeal joint as a synonym - these joints connect to the carpometacarpus - this is not necessarily inconsistent with the relationship for this class to metacarpal bone, as the carpometacarpus could be considered to have a metacarpal as part ## Synonyms - * MP joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35246] - * metacarpo-phalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000453] - * metacarpal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35246] - * carpometacarpophalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:8782[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * articulationes metacarpophalangeae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metacarpophalangeal_joint[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metacarpal phalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0004294] + * MP joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35246 ] + * metacarpo-phalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000453 ] + * metacarpal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35246 ] + * carpometacarpophalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:8782, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * articulationes metacarpophalangeae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metacarpophalangeal_joint, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metacarpal phalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0004294 ] ## Cross-references @@ -25,7 +25,7 @@ * OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA * SCTID:280995004 * SCTID:370651001 - * UMLS:C0025525 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metacarpophalangeal_Joint] + * UMLS:C0025525 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metacarpophalangeal_Joint ] * Wikipedia:Metacarpophalangeal_joint * galen:MetacarpoPhalangealJoint * http://upload.wikimedia.org/wikipedia/commons/5/53/Gray337.png @@ -44,7 +44,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [metacarpal bone](../../UBERON/74/UBERON_0002374.md) and [connects](../../ts/core#connects.md) some [proximal phalanx of manus](../../UBERON/34/UBERON_0002234.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms @@ -52,8 +52,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_71364 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003895.md b/md/UBERON/95/UBERON_0003895.md index abe88713ab..f659697a6e 100644 --- a/md/UBERON/95/UBERON_0003895.md +++ b/md/UBERON/95/UBERON_0003895.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003895 * *Label* = hypaxial myotome region - * *Definition* = Portion of myotome that is ventral to the horizontal septum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = Portion of myotome that is ventral to the horizontal septum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms - * hypaxial myotome region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001085] - * body wall muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0003228] + * hypaxial myotome region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001085 ] + * body wall muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0003228 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0003995.md b/md/UBERON/95/UBERON_0003995.md index 4d51e0a2f2..6156ab3d6e 100644 --- a/md/UBERON/95/UBERON_0003995.md +++ b/md/UBERON/95/UBERON_0003995.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003995 * *Label* = subarcuate fossa - * *Definition* = the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009822] + * *Definition* = the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009822 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004195.md b/md/UBERON/95/UBERON_0004195.md index 85eb7f3c88..6591aae6a9 100644 --- a/md/UBERON/95/UBERON_0004195.md +++ b/md/UBERON/95/UBERON_0004195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004195 * *Label* = short nephron - * *Definition* = Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072030] + * *Definition* = Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072030 ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004295.md b/md/UBERON/95/UBERON_0004295.md index d7b8b2d4a3..eb341734d3 100644 --- a/md/UBERON/95/UBERON_0004295.md +++ b/md/UBERON/95/UBERON_0004295.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004295 * *Label* = sympathetic nerve trunk - * *Definition* = A nerve trunk that is part of a sympathetic nervous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A nerve trunk that is part of a sympathetic nervous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nerve trunk of sympathetic nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * nerve trunk of sympathetic part of autonomic division of nervous system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * sympathetic nervous system nerve trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * nerve trunk of sympathetic nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * nerve trunk of sympathetic part of autonomic division of nervous system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * sympathetic nervous system nerve trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nerve trunk](../../UBERON/64/UBERON_0002464.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sympathetic nervous system](../../UBERON/13/UBERON_0000013.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004395.md b/md/UBERON/95/UBERON_0004395.md index 64244b3363..5c9003a9e4 100644 --- a/md/UBERON/95/UBERON_0004395.md +++ b/md/UBERON/95/UBERON_0004395.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004395 * *Label* = epiphysis of first metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone of digit 1 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * first metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33815] + * first metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33815 ] * metatarsal 1 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 1](../../UBERON/50/UBERON_0003650.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004495.md b/md/UBERON/95/UBERON_0004495.md index 12c5f3260d..dae001d027 100644 --- a/md/UBERON/95/UBERON_0004495.md +++ b/md/UBERON/95/UBERON_0004495.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004495 * *Label* = skeletal muscle tissue of diaphragm - * *Definition* = A portion of skeletal muscle tissue that is part of a diaphragm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a diaphragm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [diaphragm](../../UBERON/03/UBERON_0001103.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004695.md b/md/UBERON/95/UBERON_0004695.md index e285d2a373..782f9d221d 100644 --- a/md/UBERON/95/UBERON_0004695.md +++ b/md/UBERON/95/UBERON_0004695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004695 * *Label* = arterial system smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of an arterial system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [arterial system](../../UBERON/72/UBERON_0004572.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004795.md b/md/UBERON/95/UBERON_0004795.md index c1cb04b8d8..dd9063dc1e 100644 --- a/md/UBERON/95/UBERON_0004795.md +++ b/md/UBERON/95/UBERON_0004795.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004795 * *Label* = pancreas secretion - * *Definition* = A secretion that is part of a pancreas [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A secretion that is part of a pancreas [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * pancreatic secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * pancreatic secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0002516 - * UMLS:C0030296 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pancreatic_Secretion] + * UMLS:C0030296 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pancreatic_Secretion ] * ncithesaurus:Pancreatic_Secretion ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pancreas](../../UBERON/64/UBERON_0001264.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004895.md b/md/UBERON/95/UBERON_0004895.md index f5fe8e11cc..e3c0b9d126 100644 --- a/md/UBERON/95/UBERON_0004895.md +++ b/md/UBERON/95/UBERON_0004895.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004895 * *Label* = alveolar smooth muscle - * *Definition* = Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012628] + * *Definition* = Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012628 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [alveolus of lung](../../UBERON/99/UBERON_0002299.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0004995.md b/md/UBERON/95/UBERON_0004995.md index 70274803a5..ab4e9f9609 100644 --- a/md/UBERON/95/UBERON_0004995.md +++ b/md/UBERON/95/UBERON_0004995.md @@ -3,41 +3,41 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004995 * *Label* = mucosa of body of stomach - * *Definition* = A mucosa that is part of a body of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a body of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * body of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * body of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * body of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * body of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * corpus gastricum (ventriculare) mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * corpus gastricum (ventriculare) mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * corpus gastricum (ventriculare) mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * corpus gastricum (ventriculare) organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric body mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric body mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric body mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric body organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of corpus gastricum (ventriculare) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of gastric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of body of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of corpus gastricum (ventriculare) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of gastric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of stomach body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of stomach body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of body of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of corpus gastricum (ventriculare) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of gastric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of stomach body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of body of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of corpus gastricum (ventriculare) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of gastric body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach body [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach body mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach body mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach body mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach body organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * body of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * body of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * body of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * body of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * corpus gastricum (ventriculare) mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * corpus gastricum (ventriculare) mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * corpus gastricum (ventriculare) mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * corpus gastricum (ventriculare) organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric body mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric body mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric body mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric body organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of corpus gastricum (ventriculare) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of gastric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of body of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of corpus gastricum (ventriculare) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of gastric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of stomach body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of stomach body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of body of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of corpus gastricum (ventriculare) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of gastric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of stomach body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of body of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of corpus gastricum (ventriculare) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of gastric body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach body [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach body mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach body mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach body mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach body organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -53,15 +53,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [body of stomach](../../UBERON/61/UBERON_0001161.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005095.md b/md/UBERON/95/UBERON_0005095.md index 56c1c568f0..a029910d85 100644 --- a/md/UBERON/95/UBERON_0005095.md +++ b/md/UBERON/95/UBERON_0005095.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005095 * *Label* = kidney rudiment - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072003] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072003 ] * *Comment* = Editor notes: class added for consistency with GO - consider merging with kidney mesenchyme. ## Synonyms - * kidney anlage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:mtg_kidney_jan10] + * kidney anlage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:mtg_kidney_jan10 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005195.md b/md/UBERON/95/UBERON_0005195.md index 53e9ff46ba..15efb585d1 100644 --- a/md/UBERON/95/UBERON_0005195.md +++ b/md/UBERON/95/UBERON_0005195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005195 * *Label* = deferent duct vein - * *Definition* = A vein that is part of a vas deferens [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A vein that is part of a vas deferens [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vas deferens](../../UBERON/00/UBERON_0001000.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005295.md b/md/UBERON/95/UBERON_0005295.md index dab51b937a..232d38e48a 100644 --- a/md/UBERON/95/UBERON_0005295.md +++ b/md/UBERON/95/UBERON_0005295.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005295 * *Label* = sex cord - * *Definition* = Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sex_cords[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.answers.com/topic/sex-cord] + * *Definition* = Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sex_cords, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.answers.com/topic/sex-cord ] ## Synonyms @@ -16,7 +16,7 @@ * EHDAA2:0004051 * RETIRED_EHDAA2:0001523 * SCTID:343823004 - * UMLS:C1512242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gonadal_Cord] + * UMLS:C1512242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gonadal_Cord ] * Wikipedia:Sex_cords * ncithesaurus:Gonadal_Cord @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005395.md b/md/UBERON/95/UBERON_0005395.md index 7128bb02bb..861be88660 100644 --- a/md/UBERON/95/UBERON_0005395.md +++ b/md/UBERON/95/UBERON_0005395.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005395 * *Label* = cortical layer VI - * *Definition* = Innermost layer of neocortex lying deep to the internal pyramidal cell layer defined cytoarchitecturally by cells of varying size. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] + * *Definition* = Innermost layer of neocortex lying deep to the internal pyramidal cell layer defined cytoarchitecturally by cells of varying size. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] ## Synonyms - * cerebral cortex, layer 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:CTX6] - * lamina multiformis isocorticis [lamina vi] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77805[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * layer VI of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * multiform layer of isocortex [layer vi] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77805] - * multiform layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77805] - * multiform layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * neocortex layer 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * neocortex layer VI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * neocortex multiform layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * neocortical layer 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * neocortical layer VI [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] - * pleiomorphic layer of neocortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_090812] + * cerebral cortex, layer 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:CTX6 ] + * lamina multiformis isocorticis [lamina vi] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77805, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * layer VI of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * multiform layer of isocortex [layer vi] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77805 ] + * multiform layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77805 ] + * multiform layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * neocortex layer 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * neocortex layer VI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * neocortex multiform layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * neocortical layer 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * neocortical layer VI [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] + * pleiomorphic layer of neocortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_090812 ] * multiform layer ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005495.md b/md/UBERON/95/UBERON_0005495.md index 9a59f2dd88..a5c2dc8623 100644 --- a/md/UBERON/95/UBERON_0005495.md +++ b/md/UBERON/95/UBERON_0005495.md @@ -6,8 +6,8 @@ ## Synonyms - * lateral wall midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000906] - * lateral wall mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000455] + * lateral wall midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000906 ] + * lateral wall mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000455 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005695.md b/md/UBERON/95/UBERON_0005695.md index 62f4d6b9e6..49f343f357 100644 --- a/md/UBERON/95/UBERON_0005695.md +++ b/md/UBERON/95/UBERON_0005695.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005695 * *Label* = manual digit 5 mesenchyme - * *Definition* = Mesenchyme that is part of a manual digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a manual digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fore limb digit 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * fore limb digit 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit 5](../../UBERON/25/UBERON_0003625.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005795.md b/md/UBERON/95/UBERON_0005795.md index 8aa80ebe5b..b10d08c95d 100644 --- a/md/UBERON/95/UBERON_0005795.md +++ b/md/UBERON/95/UBERON_0005795.md @@ -6,7 +6,7 @@ ## Synonyms - * fetal uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72173] + * fetal uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72173 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005895.md b/md/UBERON/95/UBERON_0005895.md index d0452291f4..e432b619f9 100644 --- a/md/UBERON/95/UBERON_0005895.md +++ b/md/UBERON/95/UBERON_0005895.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005895 * *Label* = insect leg - * *Definition* = The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004640[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007480] + * *Definition* = The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004640, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007480 ] ## Synonyms - * imaginal disc-derived leg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0007480] + * imaginal disc-derived leg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0007480 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0005995.md b/md/UBERON/95/UBERON_0005995.md index fe08c1956d..2176ac9dd3 100644 --- a/md/UBERON/95/UBERON_0005995.md +++ b/md/UBERON/95/UBERON_0005995.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005995 * *Label* = mitral valve anulus - * *Definition* = the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010613] + * *Definition* = the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010613 ] ## Synonyms - * anulus of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9498] - * fibrous ring of mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9498] - * mitral annulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mitral_annulus] - * mitral anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9498] - * mitral valvar anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9498] + * anulus of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9498 ] + * fibrous ring of mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9498 ] + * mitral annulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mitral_annulus ] + * mitral anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9498 ] + * mitral valvar anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9498 ] ## Cross-references @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to](../../RO/71/RO_0002371.md) some [mitral valve cusp](../../UBERON/96/UBERON_0005996.md) and [fibrous ring of heart](../../UBERON/08/UBERON_0006008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mitral valve](../../UBERON/35/UBERON_0002135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006095.md b/md/UBERON/95/UBERON_0006095.md index 38fe8fd256..708f9cfaa0 100644 --- a/md/UBERON/95/UBERON_0006095.md +++ b/md/UBERON/95/UBERON_0006095.md @@ -6,28 +6,28 @@ ## Synonyms - * B09-41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1774] - * BA41 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1774] - * Brodmann area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68638] - * Brodmann area 41, anterior transverse temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1774] - * Brodmann's area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1582] - * anterior transverse temporal area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68638] - * anterior transverse termporal area 41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1582] - * area 41 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68638] - * area 41 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1582] - * area 41 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1774] - * area temporalis transversa anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1774] - * principle auditory receptive areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1582] - * B09-41 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1774[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1774 ] + * BA41 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1774 ] + * Brodmann area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68638 ] + * Brodmann area 41, anterior transverse temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1774 ] + * Brodmann's area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1582 ] + * anterior transverse temporal area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68638 ] + * anterior transverse termporal area 41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1582 ] + * area 41 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68638 ] + * area 41 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1582 ] + * area 41 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1774 ] + * area temporalis transversa anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1774 ] + * principle auditory receptive areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1582 ] + * B09-41 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1774, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * FMA:68638 * NIF_GrossAnatomy:birnlex_1582 * NIF_GrossAnatomy:birnlex_1774 - * NeuroNames:95 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1582] - * UMLS:C1272502 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1774] + * NeuroNames:95 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1582 ] + * UMLS:C1272502 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1774 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013574 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006195.md b/md/UBERON/95/UBERON_0006195.md index 74512b5700..3f2ed6f32f 100644 --- a/md/UBERON/95/UBERON_0006195.md +++ b/md/UBERON/95/UBERON_0006195.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006195 * *Label* = renal sinus of left kidney - * *Definition* = A renal sinus that is part of a left kidney. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A renal sinus that is part of a left kidney. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * left renal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17622] + * left renal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17622 ] ## Cross-references @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [left kidney](../../UBERON/38/UBERON_0004538.md) and [renal sinus](../../UBERON/71/UBERON_0006171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006295.md b/md/UBERON/95/UBERON_0006295.md index aaba84b81b..799399a079 100644 --- a/md/UBERON/95/UBERON_0006295.md +++ b/md/UBERON/95/UBERON_0006295.md @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006495.md b/md/UBERON/95/UBERON_0006495.md index 81a9a9c1de..cd8c4aed6b 100644 --- a/md/UBERON/95/UBERON_0006495.md +++ b/md/UBERON/95/UBERON_0006495.md @@ -6,7 +6,7 @@ ## Synonyms - * osseous cochlear canal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75666] + * osseous cochlear canal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75666 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006595.md b/md/UBERON/95/UBERON_0006595.md index 65a25ea1f3..57131b95eb 100644 --- a/md/UBERON/95/UBERON_0006595.md +++ b/md/UBERON/95/UBERON_0006595.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006695.md b/md/UBERON/95/UBERON_0006695.md index 302fcf9966..11db55f009 100644 --- a/md/UBERON/95/UBERON_0006695.md +++ b/md/UBERON/95/UBERON_0006695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006695 * *Label* = mammillary axonal complex - * *Definition* = The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061373] + * *Definition* = The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061373 ] ## Synonyms @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0006795.md b/md/UBERON/95/UBERON_0006795.md index 468fcbf290..66337eb589 100644 --- a/md/UBERON/95/UBERON_0006795.md +++ b/md/UBERON/95/UBERON_0006795.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006795 * *Label* = arthropod optic lobe - * *Definition* = A region of the adult brain that processes the visual information from the compound eyes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBC:gg[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN:978-3-11-014898-5] + * *Definition* = A region of the adult brain that processes the visual information from the compound eyes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBC:gg, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN:978-3-11-014898-5 ] * *Comment* = Editor notes: this term should be ceded to the arthropod anatomy ontology ## Synonyms - * optic lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00003701[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * optic lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00003701, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0007095.md b/md/UBERON/95/UBERON_0007095.md index 1c20254184..1594cb9c3b 100644 --- a/md/UBERON/95/UBERON_0007095.md +++ b/md/UBERON/95/UBERON_0007095.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0007195.md b/md/UBERON/95/UBERON_0007195.md index e0c00e3ee6..1c57690535 100644 --- a/md/UBERON/95/UBERON_0007195.md +++ b/md/UBERON/95/UBERON_0007195.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007195 * *Label* = stroma of bone marrow - * *Definition* = The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow#Stroma] + * *Definition* = The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow#Stroma ] ## Synonyms - * bone marrow stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:21426] + * bone marrow stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:21426 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0007295.md b/md/UBERON/95/UBERON_0007295.md index 6fd1cc1a85..168904c7ca 100644 --- a/md/UBERON/95/UBERON_0007295.md +++ b/md/UBERON/95/UBERON_0007295.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007295 * *Label* = presumptive rhombomere 8 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 8. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 8. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 8](../../UBERON/27/UBERON_0005527.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0007795.md b/md/UBERON/95/UBERON_0007795.md index a3f3f0d723..ca49f89819 100644 --- a/md/UBERON/95/UBERON_0007795.md +++ b/md/UBERON/95/UBERON_0007795.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007795 * *Label* = ascitic fluid - * *Definition* = The serous fluid which accumulates in the peritoneal cavity in ascites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.207.119] + * *Definition* = The serous fluid which accumulates in the peritoneal cavity in ascites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.207.119 ] * *Comment* = todo - move to pathological anatomical entity ontology ## Synonyms - * ascites [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000091] - * ascites fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000091] + * ascites [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000091 ] + * ascites fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000091 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0008195.md b/md/UBERON/95/UBERON_0008195.md index 6539c5b809..ef70bf60a6 100644 --- a/md/UBERON/95/UBERON_0008195.md +++ b/md/UBERON/95/UBERON_0008195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008195 * *Label* = tarsometatarsus - * *Definition* = The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (pes) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tarsometatarsus] + * *Definition* = The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (pes) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tarsometatarsus ] * *Comment* = Taxon notes: found in birds[VSAO] ## Synonyms @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [bone tissue](../../UBERON/81/UBERON_0002481.md) and [tarsometatarsus endochondral element](../../UBERON/12/UBERON_0015012.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0008295.md b/md/UBERON/95/UBERON_0008295.md index 47809ae4d7..033182b373 100644 --- a/md/UBERON/95/UBERON_0008295.md +++ b/md/UBERON/95/UBERON_0008295.md @@ -7,7 +7,7 @@ ## Synonyms - * barbule [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * barbule [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0008595.md b/md/UBERON/95/UBERON_0008595.md index d21ce76760..40522187c8 100644 --- a/md/UBERON/95/UBERON_0008595.md +++ b/md/UBERON/95/UBERON_0008595.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008595 * *Label* = levator anguli oris - * *Definition* = The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris_muscle] + * *Definition* = The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris_muscle ] ## Synonyms - * levator anguli oris muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris] - * caninus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris] - * caninus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris] - * levator anguli oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris] - * musculus levator anguli oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Levator_anguli_oris] + * levator anguli oris muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris ] + * caninus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris ] + * caninus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris ] + * levator anguli oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris ] + * musculus levator anguli oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Levator_anguli_oris ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0008895.md b/md/UBERON/95/UBERON_0008895.md index 1aef4e657f..ceed57580a 100644 --- a/md/UBERON/95/UBERON_0008895.md +++ b/md/UBERON/95/UBERON_0008895.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008895 * *Label* = splanchnocranium - * *Definition* = Subdivision of endoskeleton derived from pharyngeal arches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Facial_skeleton[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Subdivision of endoskeleton derived from pharyngeal arches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Facial_skeleton, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = AO notes: VSAO labels this term 'pharyngeal arch' (2012-06-01) - however, it clearly means pharyngeal arch skeleton. Editor/AO notes: many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both ## Synonyms - * viscerocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000315[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Viscerocranium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001216[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * viscerocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000315, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Viscerocranium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001216, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * branchial arch skeleton * gill arch skeleton - * pharyngeal arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000149[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * pharyngeal arch skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001216] - * pharyngeal skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001216] - * visceral cranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * visceral skeletal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] - * visceral skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000007] + * pharyngeal arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000149, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * pharyngeal arch skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001216 ] + * pharyngeal skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001216 ] + * visceral cranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * visceral skeletal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] + * visceral skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000007 ] ## Cross-references @@ -36,7 +36,7 @@ * [structure with developmental contribution from neural crest](../../UBERON/14/UBERON_0010314.md) * [primary subdivision of cranial skeletal system](../../UBERON/59/UBERON_0011159.md) - * [has_part](../../BFO/51/BFO_0000051.md) some ObjectSomeValuesFrom( ) + * [has_part](../../BFO/51/BFO_0000051.md) some [part_of](../../BFO/50/BFO_0000050.md) some [facial skeleton](../../UBERON/56/UBERON_0011156.md) * [develops from](../../RO/02/RO_0002202.md) some [pharyngeal arch](../../UBERON/39/UBERON_0002539.md) * [has developmental contribution from](../../RO/54/RO_0002254.md) some [cranial neural crest](../../UBERON/99/UBERON_0003099.md) @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The part of the skull derived from the embryonic pharyngeal arches. [Biology_Online][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The skull of ancestral tetrapods has the three basic components that we have been considering: (1) chondrocranium, (2) splanchnocranium, and (3) dermatocranium (reference 1); Each part of the skull arises from a separate phylogenetic source. The most ancient part is the splanchnocranium (visceral cranium), which first arose to support pharyngeal slits in protochordates (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0008995.md b/md/UBERON/95/UBERON_0008995.md index 6f557b0044..aa220ecb9d 100644 --- a/md/UBERON/95/UBERON_0008995.md +++ b/md/UBERON/95/UBERON_0008995.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008995 * *Label* = nucleus of cerebellar nuclear complex - * *Definition* = Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003835] + * *Definition* = Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003835 ] ## Synonyms - * cerebellar nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003835] + * cerebellar nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003835 ] * deep cerebellar nucleus ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [nucleus of brain](../../UBERON/08/UBERON_0002308.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar nuclear complex](../../UBERON/30/UBERON_0002130.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009095.md b/md/UBERON/95/UBERON_0009095.md index 89cda75b72..8779455d4f 100644 --- a/md/UBERON/95/UBERON_0009095.md +++ b/md/UBERON/95/UBERON_0009095.md @@ -6,8 +6,8 @@ ## Synonyms - * papillary tip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + KUPO:0001009] - * papillary tips [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + KUPO:0001009[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * papillary tip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = KUPO:0001009 ] + * papillary tips [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = KUPO:0001009, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009195.md b/md/UBERON/95/UBERON_0009195.md index 72d829dc1f..e9f1f3f6aa 100644 --- a/md/UBERON/95/UBERON_0009195.md +++ b/md/UBERON/95/UBERON_0009195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009195 * *Label* = anal membrane - * *Definition* = The dorsal part of the cloacal membrane following its partition by the urorectal septum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ncithesaurus:Anal_Membrane] + * *Definition* = The dorsal part of the cloacal membrane following its partition by the urorectal septum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ncithesaurus:Anal_Membrane ] * *Comment* = During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html] ## Synonyms @@ -13,7 +13,7 @@ * EHDAA2:0004018 * SCTID:344130000 - * UMLS:C1288337 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anal_Membrane] + * UMLS:C1288337 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anal_Membrane ] * ncithesaurus:Anal_Membrane ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009495.md b/md/UBERON/95/UBERON_0009495.md index 4c8c672e78..51f26a893f 100644 --- a/md/UBERON/95/UBERON_0009495.md +++ b/md/UBERON/95/UBERON_0009495.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009695.md b/md/UBERON/95/UBERON_0009695.md index 1b9d454c52..75b62170e6 100644 --- a/md/UBERON/95/UBERON_0009695.md +++ b/md/UBERON/95/UBERON_0009695.md @@ -6,8 +6,8 @@ ## Synonyms - * epithelium of laryngeal pharynx [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62454] - * laryngopharynx epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62454] + * epithelium of laryngeal pharynx [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62454 ] + * laryngopharynx epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62454 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypopharynx](../../UBERON/51/UBERON_0001051.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009895.md b/md/UBERON/95/UBERON_0009895.md index a10cae53e7..f7d65fd392 100644 --- a/md/UBERON/95/UBERON_0009895.md +++ b/md/UBERON/95/UBERON_0009895.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0009995.md b/md/UBERON/95/UBERON_0009995.md index 84e62922e4..6c62f4abf8 100644 --- a/md/UBERON/95/UBERON_0009995.md +++ b/md/UBERON/95/UBERON_0009995.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009995 * *Label* = tertiary chorionic villus - * *Definition* = Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] + * *Definition* = Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm ] ## Synonyms ## Cross-references - * UMLS:C1515280 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Tertiary_Chorionic_Villus] + * UMLS:C1515280 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Tertiary_Chorionic_Villus ] * ncithesaurus:Tertiary_Chorionic_Villus ## Subsets @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010195.md b/md/UBERON/95/UBERON_0010195.md index fefc483826..f8e97b51da 100644 --- a/md/UBERON/95/UBERON_0010195.md +++ b/md/UBERON/95/UBERON_0010195.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010195 * *Label* = renal portal system - * *Definition* = A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] * *Comment* = Function notes: function not well understood. Taxon notes: present in all classes of vertebrates except mammals; the mammalian kidney has a low pressure vascular network that may be its counterpart [ISBN10:0073040584] ## Synonyms * portal system of kidney - * renal-portal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0010518] + * renal-portal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0010518 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the circulatory system in which the veins of the hindlimb combine to form the pair Jacobson's veins which receive many small vesicles from the kidney and also collects blood from the oviducal vein.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010295.md b/md/UBERON/95/UBERON_0010295.md index c4f3c79a20..f323bf63ae 100644 --- a/md/UBERON/95/UBERON_0010295.md +++ b/md/UBERON/95/UBERON_0010295.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010295 * *Label* = substantia propria of sclera - * *Definition* = A stroma that is part of a sclera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A stroma that is part of a sclera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * scleral stroma [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58365] - * stroma of sclera [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58365] - * subsantia propria sclerae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58365] + * scleral stroma [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58365 ] + * stroma of sclera [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58365 ] + * subsantia propria sclerae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58365 ] * subsantia propria ## Cross-references * FMA:58365 * SCTID:368851004 - * UMLS:C1704397 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Substantia_Propria] + * UMLS:C1704397 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Substantia_Propria ] * ncithesaurus:Substantia_Propria ## Subsets @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [sclera](../../UBERON/73/UBERON_0001773.md) and [stroma](../../UBERON/91/UBERON_0003891.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010395.md b/md/UBERON/95/UBERON_0010395.md index a9aacd2129..343646e2d7 100644 --- a/md/UBERON/95/UBERON_0010395.md +++ b/md/UBERON/95/UBERON_0010395.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010395 * *Label* = lymph node primary follicle - * *Definition* = An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002345[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/6] + * *Definition* = An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002345, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/6 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [lymph node](../../UBERON/29/UBERON_0000029.md) and [primary nodular lymphoid tissue](../../UBERON/22/UBERON_0010422.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010695.md b/md/UBERON/95/UBERON_0010695.md index 867b9ba0dd..cedfd6739c 100644 --- a/md/UBERON/95/UBERON_0010695.md +++ b/md/UBERON/95/UBERON_0010695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010695 * *Label* = mesenchyme of tarsal region - * *Definition* = Mesenchyme of the carpal region that conributes to the tarsal skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Mesenchyme of the carpal region that conributes to the tarsal skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010895.md b/md/UBERON/95/UBERON_0010895.md index 0f7700df72..a4900cd1b7 100644 --- a/md/UBERON/95/UBERON_0010895.md +++ b/md/UBERON/95/UBERON_0010895.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010895 * *Label* = sequential hermaphroditic organism - * *Definition* = Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000045] + * *Definition* = Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000045 ] ## Synonyms - * consecutive hermaphroditic organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000045] + * consecutive hermaphroditic organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000045 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0010995.md b/md/UBERON/95/UBERON_0010995.md index e40a67f9c8..773439d48b 100644 --- a/md/UBERON/95/UBERON_0010995.md +++ b/md/UBERON/95/UBERON_0010995.md @@ -6,11 +6,11 @@ ## Synonyms - * deep layer of masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49003] - * deep part of masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49003] + * deep layer of masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49003 ] + * deep part of masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49003 ] * masseter, deep - * masseter, profundus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FEED:FEED] - * pars profunda (musculus masseter) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49003] + * masseter, profundus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FEED:FEED ] + * pars profunda (musculus masseter) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49003 ] * pars profunda of masseter muscle ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010995 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011095.md b/md/UBERON/95/UBERON_0011095.md index 7249dfe5e9..69bd7910fe 100644 --- a/md/UBERON/95/UBERON_0011095.md +++ b/md/UBERON/95/UBERON_0011095.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011095 * *Label* = vertebra pre-cartilage condensation - * *Definition* = A pre-cartilage condensation that is part of a vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A pre-cartilage condensation that is part of a vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * vertebral pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000582] + * vertebral pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000582 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vertebral column](../../UBERON/30/UBERON_0001130.md) and [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011195.md b/md/UBERON/95/UBERON_0011195.md index 8fe3f5ee14..ffa8b004cf 100644 --- a/md/UBERON/95/UBERON_0011195.md +++ b/md/UBERON/95/UBERON_0011195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011195 * *Label* = inferior parathyroid epithelium - * *Definition* = An epithelium that is part of a inferior parathyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a inferior parathyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior parathyroid gland](../../UBERON/55/UBERON_0006755.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011495.md b/md/UBERON/95/UBERON_0011495.md index e09a955a47..ba495769a8 100644 --- a/md/UBERON/95/UBERON_0011495.md +++ b/md/UBERON/95/UBERON_0011495.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011495 * *Label* = rectus thoracis muscle - * *Definition* = Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MURDOCH:2224] + * *Definition* = Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MURDOCH:2224 ] ## Synonyms - * rectus thoracis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002366] + * rectus thoracis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002366 ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011595.md b/md/UBERON/95/UBERON_0011595.md index 8ccb4322bc..a8cf0e9660 100644 --- a/md/UBERON/95/UBERON_0011595.md +++ b/md/UBERON/95/UBERON_0011595.md @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011595 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://eol.org/collections/11578 +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_0011695.md b/md/UBERON/95/UBERON_0011695.md index fad3e0bb2b..1b8c715c84 100644 --- a/md/UBERON/95/UBERON_0011695.md +++ b/md/UBERON/95/UBERON_0011695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011695 * *Label* = embryonic cardiovascular system - * *Definition* = A cardiovascular system that is part of a conceptus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A cardiovascular system that is part of a conceptus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cardiovascular system](../../UBERON/35/UBERON_0004535.md) and [part_of](../../BFO/50/BFO_0000050.md) some [conceptus](../../UBERON/16/UBERON_0004716.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011795.md b/md/UBERON/95/UBERON_0011795.md index 452a2bd531..3763dc69ea 100644 --- a/md/UBERON/95/UBERON_0011795.md +++ b/md/UBERON/95/UBERON_0011795.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011795 * *Label* = remex feather - * *Definition* = A flight feather located on the posterior side of the wing [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather#Remiges] + * *Definition* = A flight feather located on the posterior side of the wing [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather#Remiges ] ## Synonyms - * remiges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * remiges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * remex ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [flight feather](../../UBERON/93/UBERON_0011793.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb wing](../../UBERON/24/UBERON_0000024.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0011895.md b/md/UBERON/95/UBERON_0011895.md index 488e12dbe1..23be23e4fa 100644 --- a/md/UBERON/95/UBERON_0011895.md +++ b/md/UBERON/95/UBERON_0011895.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011895 * *Label* = endomysium - * *Definition* = A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Endomysium] + * *Definition* = A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Endomysium ] ## Synonyms - * fascia of muscle fiber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9729] + * fascia of muscle fiber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9729 ] ## Cross-references * FMA:9729 * SCTID:91739007 - * UMLS:C0504097 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Endomysium] + * UMLS:C0504097 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Endomysium ] * Wikipedia:Endomysium * ncithesaurus:Endomysium @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [reticular tissue](../../UBERON/04/UBERON_0006804.md) and [surrounds](../../RO/21/RO_0002221.md) some [muscle cell](../../CL/87/CL_0000187.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0012195.md b/md/UBERON/95/UBERON_0012195.md index 9896b0162f..cf8ecc4dad 100644 --- a/md/UBERON/95/UBERON_0012195.md +++ b/md/UBERON/95/UBERON_0012195.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0012295.md b/md/UBERON/95/UBERON_0012295.md index 4b87dcaa77..10049ffdac 100644 --- a/md/UBERON/95/UBERON_0012295.md +++ b/md/UBERON/95/UBERON_0012295.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012295 * *Label* = Gurin's valve - * *Definition* = an inconstant fold or valve of mucous membrane sometimes found in the root or upper wall of the navicular fossa of the urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011839[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/valve-of-navicular-fossa.html] + * *Definition* = an inconstant fold or valve of mucous membrane sometimes found in the root or upper wall of the navicular fossa of the urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011839, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/valve-of-navicular-fossa.html ] ## Synonyms * Guerin's valve - * Gurin's fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/valve-of-navicular-fossa.html] - * Gurin's valvule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] - * urethral valve of Gurin [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * Gurin's fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/valve-of-navicular-fossa.html ] + * Gurin's valvule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] + * urethral valve of Gurin [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] * valve of fossa navicularis of urethra - * valvula fossae navicularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * valvula fossae navicularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012295 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0013195.md b/md/UBERON/95/UBERON_0013195.md index f649a7a12f..b4ca22b0c7 100644 --- a/md/UBERON/95/UBERON_0013195.md +++ b/md/UBERON/95/UBERON_0013195.md @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [parakeratinized epithelium](../../UBERON/93/UBERON_0013193.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gingiva](../../UBERON/28/UBERON_0001828.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013195 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0013495.md b/md/UBERON/95/UBERON_0013495.md index 62c0dc1804..c3d9b91f63 100644 --- a/md/UBERON/95/UBERON_0013495.md +++ b/md/UBERON/95/UBERON_0013495.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013495 * *Label* = barbed keratin-coated spine - * *Definition* = A keratin-coated spine that is tipped with a barb. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A keratin-coated spine that is tipped with a barb. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Taxon notes: Porcupines' quills, or spines, take on various forms, depending on the species, but all are modified hairs coated with thick plates of keratin, and they are embedded in the skin musculature. Old World porcupines (Hystricidae) have quills embedded in clusters, whereas in New World porcupines (Erethizontidae), single quills are interspersed with bristles, underfur and hair. ## Synonyms @@ -31,8 +31,9 @@ * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_10135 * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_30649 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013495 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0013595.md b/md/UBERON/95/UBERON_0013595.md index 21ec313bd5..7f7ff891b7 100644 --- a/md/UBERON/95/UBERON_0013595.md +++ b/md/UBERON/95/UBERON_0013595.md @@ -25,8 +25,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0013695.md b/md/UBERON/95/UBERON_0013695.md index db66d003ec..2e62b4fd96 100644 --- a/md/UBERON/95/UBERON_0013695.md +++ b/md/UBERON/95/UBERON_0013695.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013695 * *Label* = colon endothelium - * *Definition* = Vascular endothelium found in colon blood vessels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] + * *Definition* = Vascular endothelium found in colon blood vessels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] ## Synonyms - * colon endothelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] - * colon endothelial cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] - * colonic endothelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] - * colonic endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] - * colorectal endothelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] - * colorectal endothelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-0162] + * colon endothelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] + * colon endothelial cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] + * colonic endothelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] + * colonic endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] + * colorectal endothelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] + * colorectal endothelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-0162 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0014395.md b/md/UBERON/95/UBERON_0014395.md index 0c7db63920..e557e992de 100644 --- a/md/UBERON/95/UBERON_0014395.md +++ b/md/UBERON/95/UBERON_0014395.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014395 * *Label* = proximal mesopodial bone - * *Definition* = A tarsal bone that connected_to a zeugopod skeleton. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A tarsal bone that connected_to a zeugopod skeleton. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [zeugopodial skeleton](../../UBERON/84/UBERON_0011584.md) and [mesopodium bone](../../UBERON/56/UBERON_0003656.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014395 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0014595.md b/md/UBERON/95/UBERON_0014595.md index 0e2429c3ee..4232ce9f43 100644 --- a/md/UBERON/95/UBERON_0014595.md +++ b/md/UBERON/95/UBERON_0014595.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1342[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHmpv [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1342[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus medial parvicellular part, ventral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmpv] - * paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmpv] - * paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHmpv] + * paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1342, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHmpv [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1342, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus medial parvicellular part, ventral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmpv ] + * paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmpv ] + * paraventricular nucleus of the hypothalamus, descending division, medial parvicellular part, ventral zone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHmpv ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014595 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0014695.md b/md/UBERON/95/UBERON_0014695.md index f5e93b46f7..83b434c466 100644 --- a/md/UBERON/95/UBERON_0014695.md +++ b/md/UBERON/95/UBERON_0014695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014695 * *Label* = deep auricular artery - * *Definition* = The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_auricular_artery] + * *Definition* = The deep auricular artery often arises in common with the anterior tympanic artery. It ascends in the substance of the parotid gland, behind the temporomandibular articulation, pierces the cartilaginous or bony wall of the external acoustic meatus, and supplies its cuticular lining and the outer surface of the tympanic membrane. It gives a branch to the temporomandibular joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_auricular_artery ] ## Synonyms @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014695 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0014795.md b/md/UBERON/95/UBERON_0014795.md index 1074fb7653..ebce113b7b 100644 --- a/md/UBERON/95/UBERON_0014795.md +++ b/md/UBERON/95/UBERON_0014795.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014795 * *Label* = pelvic appendage muscle - * *Definition* = A muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a pelvic appendage (hindlimb or pelvic fin). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage](../../UBERON/09/UBERON_0004709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014795 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0014895.md b/md/UBERON/95/UBERON_0014895.md index 9887838853..67eacc3cc6 100644 --- a/md/UBERON/95/UBERON_0014895.md +++ b/md/UBERON/95/UBERON_0014895.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014895 * *Label* = somatic muscle - * *Definition* = A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:DOS] + * *Definition* = A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:DOS ] ## Synonyms - * skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00005073] + * skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00005073 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The muscle that is attached at either end to the cuticle[HAO]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014895 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_0015095.md b/md/UBERON/95/UBERON_0015095.md index 3ae802d8f2..91353fb520 100644 --- a/md/UBERON/95/UBERON_0015095.md +++ b/md/UBERON/95/UBERON_0015095.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal carpal bone 4 endochondral element](../../UBERON/93/UBERON_0015093.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015095 + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2000195.md b/md/UBERON/95/UBERON_2000195.md index 260219a487..1a3eead712 100644 --- a/md/UBERON/95/UBERON_2000195.md +++ b/md/UBERON/95/UBERON_2000195.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2000395.md b/md/UBERON/95/UBERON_2000395.md index 51001a4800..74efdd7719 100644 --- a/md/UBERON/95/UBERON_2000395.md +++ b/md/UBERON/95/UBERON_2000395.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000395[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000395, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_2000495.md b/md/UBERON/95/UBERON_2000495.md index e2003f9f39..9ae8a7f2e5 100644 --- a/md/UBERON/95/UBERON_2000495.md +++ b/md/UBERON/95/UBERON_2000495.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000495 * *Label* = infraorbital 5 - * *Definition* = Infraorbital that is the fifth bone of the infraorbital series. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Infraorbital that is the fifth bone of the infraorbital series. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dermosphenotic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000495] + * dermosphenotic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000495 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2000695.md b/md/UBERON/95/UBERON_2000695.md index d76239d598..10b75b49e8 100644 --- a/md/UBERON/95/UBERON_2000695.md +++ b/md/UBERON/95/UBERON_2000695.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2000795.md b/md/UBERON/95/UBERON_2000795.md index 8c404a6da7..839a3d9593 100644 --- a/md/UBERON/95/UBERON_2000795.md +++ b/md/UBERON/95/UBERON_2000795.md @@ -6,7 +6,7 @@ ## Synonyms - * fast muscle cells somite 18 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000795[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * fast muscle cells somite 18 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000795, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_2000895.md b/md/UBERON/95/UBERON_2000895.md index f0dab4357c..fe305fc9dd 100644 --- a/md/UBERON/95/UBERON_2000895.md +++ b/md/UBERON/95/UBERON_2000895.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000895 * *Label* = hypaxial region somite 18 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001095.md b/md/UBERON/95/UBERON_2001095.md index 8cdfbe05f8..30d71e8ccd 100644 --- a/md/UBERON/95/UBERON_2001095.md +++ b/md/UBERON/95/UBERON_2001095.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001095 * *Label* = immature macula - * *Definition* = An otic sensory epithelium that will develop into the mature macula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001095] + * *Definition* = An otic sensory epithelium that will develop into the mature macula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001095 ] ## Synonyms - * immature maculae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001095[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * immature sensory patch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001095] - * immature sensory patches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001095] + * immature maculae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001095, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * immature sensory patch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001095 ] + * immature sensory patches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001095 ] ## Cross-references @@ -32,7 +32,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001395.md b/md/UBERON/95/UBERON_2001395.md index c0b660921e..13a4737b4a 100644 --- a/md/UBERON/95/UBERON_2001395.md +++ b/md/UBERON/95/UBERON_2001395.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001395 * *Label* = neural arch 4 - * *Definition* = Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001695.md b/md/UBERON/95/UBERON_2001695.md index 5118a17263..a7ec3cd043 100644 --- a/md/UBERON/95/UBERON_2001695.md +++ b/md/UBERON/95/UBERON_2001695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001695 * *Label* = mediopharyngobranchial - * *Definition* = Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Recorded in several Clupeoidei (Nelson, 1967). Submitted by Mario de Pinna. ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001795.md b/md/UBERON/95/UBERON_2001795.md index 30f71197c6..32678a2438 100644 --- a/md/UBERON/95/UBERON_2001795.md +++ b/md/UBERON/95/UBERON_2001795.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001795 * *Label* = ceratohyal foramen - * *Definition* = Foramen in the anterior ceratohyal for passage of the hyoidean artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Foramen in the anterior ceratohyal for passage of the hyoidean artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * bericiform foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001795] - * beryciform foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001795] + * bericiform foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001795 ] + * beryciform foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001795 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001895.md b/md/UBERON/95/UBERON_2001895.md index 85cb5e2d35..37fe8b408e 100644 --- a/md/UBERON/95/UBERON_2001895.md +++ b/md/UBERON/95/UBERON_2001895.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001895 * *Label* = hypobranchial 2 element - * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 2 element laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2001995.md b/md/UBERON/95/UBERON_2001995.md index ab0514b137..693dc314f5 100644 --- a/md/UBERON/95/UBERON_2001995.md +++ b/md/UBERON/95/UBERON_2001995.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001995 * *Label* = papilla - * *Definition* = Surface structure that is a small, fleshy protuberance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Surface structure that is a small, fleshy protuberance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * papillae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001995[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * dermal papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001995] + * papillae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001995, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * dermal papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001995 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2002095.md b/md/UBERON/95/UBERON_2002095.md index 6789c134ac..df0d1ea35c 100644 --- a/md/UBERON/95/UBERON_2002095.md +++ b/md/UBERON/95/UBERON_2002095.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2002195.md b/md/UBERON/95/UBERON_2002195.md index 9035330d4e..4eccb80fc8 100644 --- a/md/UBERON/95/UBERON_2002195.md +++ b/md/UBERON/95/UBERON_2002195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002195 * *Label* = epidermal placode - * *Definition* = Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-081008-12] + * *Definition* = Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-081008-12 ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_2005195.md b/md/UBERON/95/UBERON_2005195.md index f4fe20eaea..c9d6709587 100644 --- a/md/UBERON/95/UBERON_2005195.md +++ b/md/UBERON/95/UBERON_2005195.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 3 contralateral llf interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005195] + * middle dorsal 3 contralateral llf interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005195 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_2005295.md b/md/UBERON/95/UBERON_2005295.md index d4922ebd7e..f38547189b 100644 --- a/md/UBERON/95/UBERON_2005295.md +++ b/md/UBERON/95/UBERON_2005295.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3000195.md b/md/UBERON/95/UBERON_3000195.md index d51933076e..9fd1e02498 100644 --- a/md/UBERON/95/UBERON_3000195.md +++ b/md/UBERON/95/UBERON_3000195.md @@ -6,8 +6,8 @@ ## Synonyms - * foramen pro aquaeducto cochleae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000195] - * inferior perilymphatic foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000195] + * foramen pro aquaeducto cochleae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000195 ] + * inferior perilymphatic foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000195 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3000295.md b/md/UBERON/95/UBERON_3000295.md index b2c3f165ab..5c96e9e078 100644 --- a/md/UBERON/95/UBERON_3000295.md +++ b/md/UBERON/95/UBERON_3000295.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3000395.md b/md/UBERON/95/UBERON_3000395.md index a97f7b87b9..9397100cee 100644 --- a/md/UBERON/95/UBERON_3000395.md +++ b/md/UBERON/95/UBERON_3000395.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3000895.md b/md/UBERON/95/UBERON_3000895.md index 67b8682e45..0ce8f6252e 100644 --- a/md/UBERON/95/UBERON_3000895.md +++ b/md/UBERON/95/UBERON_3000895.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000895 * *Label* = obsolete trochlear groove of femur - * *Definition* = Canal on the posteroventral surface of the femoral head, which articulates with the ischial process on the rim of the acetabulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Canal on the posteroventral surface of the femoral head, which articulates with the ischial process on the rim of the acetabulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_3000995.md b/md/UBERON/95/UBERON_3000995.md index 74624de770..ac71470133 100644 --- a/md/UBERON/95/UBERON_3000995.md +++ b/md/UBERON/95/UBERON_3000995.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3010195.md b/md/UBERON/95/UBERON_3010195.md index 64b0636aba..7905c2e1b1 100644 --- a/md/UBERON/95/UBERON_3010195.md +++ b/md/UBERON/95/UBERON_3010195.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010195 * *Label* = lateral appendix - * *Definition* = A small lateral diverticulum of the nasal cavity found in anuran larvae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A small lateral diverticulum of the nasal cavity found in anuran larvae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3010295.md b/md/UBERON/95/UBERON_3010295.md index c697952650..2e528bad3c 100644 --- a/md/UBERON/95/UBERON_3010295.md +++ b/md/UBERON/95/UBERON_3010295.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010295 * *Label* = obsolete spermatozoon - * *Definition* = A mature male germ cell that develops from a spermatid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:0000019] + * *Definition* = A mature male germ cell that develops from a spermatid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:0000019 ] ## Synonyms - * sperm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010295] - * spermatozoa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010295] + * sperm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010295 ] + * spermatozoa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010295 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000019 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_3010695.md b/md/UBERON/95/UBERON_3010695.md index 7bd3971acf..492161282e 100644 --- a/md/UBERON/95/UBERON_3010695.md +++ b/md/UBERON/95/UBERON_3010695.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010695 * *Label* = m. serratus superior - * *Definition* = Muscle which originates from the transverse process of presacral vertebrae IV and inserts on the dorso-medial surface of the suprascapula beneath the insertion M. rhomboideus posterior. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the transverse process of presacral vertebrae IV and inserts on the dorso-medial surface of the suprascapula beneath the insertion M. rhomboideus posterior. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_3010795.md b/md/UBERON/95/UBERON_3010795.md index c0fd093e1f..37c341678e 100644 --- a/md/UBERON/95/UBERON_3010795.md +++ b/md/UBERON/95/UBERON_3010795.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010795 * *Label* = preopercular ramule - * *Definition* = Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Ventral branch of the ramus mandibularis externus. This ramule have a superior and an inferior division, both innervating the preopercular line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/95/UBERON_4000095.md b/md/UBERON/95/UBERON_4000095.md index 3a00ef9a42..8d7ee8595c 100644 --- a/md/UBERON/95/UBERON_4000095.md +++ b/md/UBERON/95/UBERON_4000095.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000095 * *Label* = obsolete non-terminally differentiated odontoblast - * *Definition* = Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:00007012 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/95/UBERON_4200095.md b/md/UBERON/95/UBERON_4200095.md index dab0a019e9..ac7c83811a 100644 --- a/md/UBERON/95/UBERON_4200095.md +++ b/md/UBERON/95/UBERON_4200095.md @@ -28,7 +28,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0000396.md b/md/UBERON/96/UBERON_0000396.md index 30da7c8e82..c383ee827e 100644 --- a/md/UBERON/96/UBERON_0000396.md +++ b/md/UBERON/96/UBERON_0000396.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000396 * *Label* = vallate papilla - * *Definition* = any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006258] + * *Definition* = any of the large papillae, which have multiple taste buds in the trough surrounding the papillae, located near the base and on the dorsal side of the tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006258 ] ## Synonyms - * circumvallate papilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001594] - * circumvallate papilla of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54822] - * papilla vallatae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:71449[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * circumvallate papilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001594 ] + * circumvallate papilla of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54822 ] + * papilla vallatae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:71449, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * vallate papilla of tongue - * circumvallate papillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * circumvallate papillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -23,10 +23,10 @@ * MA:0001594 * NIF_GrossAnatomy:birnlex_4106_2 * SCTID:69517000 - * UMLS:C0226965 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106_2] - * UMLS:C1182961 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106_2] - * UMLS:C1182961 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Circumvallate_Papilla] - * UMLS:C1267555 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4106_2] + * UMLS:C0226965 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106_2 ] + * UMLS:C1182961 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106_2 ] + * UMLS:C1182961 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Circumvallate_Papilla ] + * UMLS:C1267555 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4106_2 ] * Wikipedia:Vallate_papilla * http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png * ncithesaurus:Circumvallate_Papilla @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongu[BTO:0001705, Wikipedia:Vallate_papilla]e * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002927 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0000996.md b/md/UBERON/96/UBERON_0000996.md index 024d06e90a..3b6157fe40 100644 --- a/md/UBERON/96/UBERON_0000996.md +++ b/md/UBERON/96/UBERON_0000996.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000996 * *Label* = vagina - * *Definition* = a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19949[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vagina] + * *Definition* = a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19949, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vagina ] * *Comment* = Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688 ## Synonyms * distal oviductal region * distal portion of oviduct - * vaginae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * vaginae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -27,7 +27,7 @@ * MIAA:0000128 * OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA * SCTID:181441005 - * UMLS:C0042232 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vagina] + * UMLS:C0042232 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vagina ] * VHOG:0001138 * Wikipedia:Vagina * galen:Vagina @@ -59,8 +59,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = vaginal * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001096.md b/md/UBERON/96/UBERON_0001096.md index 0ee5078ad6..5efcece3e9 100644 --- a/md/UBERON/96/UBERON_0001096.md +++ b/md/UBERON/96/UBERON_0001096.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001096 * *Label* = wall of esophagus - * *Definition* = An anatomical wall that is part of a esophagus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical wall that is part of a esophagus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * anatomical wall of esophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * anatomical wall of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * anatomical wall of esophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * anatomical wall of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * esophageal wall - * esophagus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * esophagus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * esophagus wall - * gullet anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gullet wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus anatomical wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * oesophagus wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of gullet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * wall of oesophagus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * gullet anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gullet wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus anatomical wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * oesophagus wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of gullet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * wall of oesophagus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [esophagus](../../UBERON/43/UBERON_0001043.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001196.md b/md/UBERON/96/UBERON_0001196.md index 884dd1ffd0..efa6c0b1ee 100644 --- a/md/UBERON/96/UBERON_0001196.md +++ b/md/UBERON/96/UBERON_0001196.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001196 * *Label* = middle colic artery - * *Definition* = The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers breadth from the transverse colon, to which they distribute branches. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_colic_artery] + * *Definition* = The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers breadth from the transverse colon, to which they distribute branches. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_colic_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria colica media [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Middle_colic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria colica media [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Middle_colic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14810 * MA:0002007 * SCTID:244276007 - * UMLS:C0226328 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Middle_Colic_Artery] + * UMLS:C0226328 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Middle_Colic_Artery ] * Wikipedia:Middle_colic_artery * galen:MiddleColicArtery * http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001296.md b/md/UBERON/96/UBERON_0001296.md index 856832d288..7695bb864b 100644 --- a/md/UBERON/96/UBERON_0001296.md +++ b/md/UBERON/96/UBERON_0001296.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001296 * *Label* = myometrium - * *Definition* = middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myometrium] + * *Definition* = middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myometrium ] * *Comment* = The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss. ## Synonyms * tunica muscularis (myometrium) - * tunica muscularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Myometrium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uterine myometrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000907] + * tunica muscularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Myometrium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uterine myometrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000907 ] * uterine smooth muscle ## Cross-references @@ -26,7 +26,7 @@ * MESH:A02.633.570.500 * MeSH:D009215 * SCTID:279879004 - * UMLS:C0027088 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Myometrium] + * UMLS:C0027088 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Myometrium ] * VHOG:0001281 * Wikipedia:Myometrium * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg @@ -60,8 +60,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In all mammals, the uterus develops as a specialization of the paramesonephric or Mllerian ducts, which gives rise to the infundibula, oviducts, uterus, cervix, and anterior vagina. Morphogenetic events common to development of all uteri include: 1) differentiation and growth of the myometrium, 2) differentiation and morphogenesis of the endometrial glands, and 3) organization and stratification of endometrial stroma. Uterine development is initiated in the fetus, but is only completed postnatally with differentiation and development of the endometrial glands.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = myometrial * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001396.md b/md/UBERON/96/UBERON_0001396.md index 090df7a48f..001f52ace8 100644 --- a/md/UBERON/96/UBERON_0001396.md +++ b/md/UBERON/96/UBERON_0001396.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001396 * *Label* = lateral thoracic artery - * *Definition* = In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_thoracic_artery] + * *Definition* = In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the serratus ventralis muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_thoracic_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * external mammary artery - * arteria thoracalis lateralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lateral_thoracic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria thoracalis lateralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lateral_thoracic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:22674 * MA:0001989 * SCTID:206135006 - * UMLS:C0226421 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lateral_Thoracic_Artery] + * UMLS:C0226421 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lateral_Thoracic_Artery ] * Wikipedia:Lateral_thoracic_artery * http://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001496.md b/md/UBERON/96/UBERON_0001496.md index 353ebd3fed..00ef2135eb 100644 --- a/md/UBERON/96/UBERON_0001496.md +++ b/md/UBERON/96/UBERON_0001496.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001496 * *Label* = ascending aorta - * *Definition* = The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the hearts axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035905[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_aorta] + * *Definition* = The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the hearts axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035905, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_aorta ] ## Synonyms * pars ascendens aortae - * aorta ascendens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pars ascendens aortae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ascending_aorta[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aorta ascendens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pars ascendens aortae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ascending_aorta, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002570 * OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA * SCTID:181299009 - * UMLS:C0003956 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ascending_Aorta] + * UMLS:C0003956 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ascending_Aorta ] * Wikipedia:Ascending_aorta * http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001596.md b/md/UBERON/96/UBERON_0001596.md index be4d5480b9..2a798188a5 100644 --- a/md/UBERON/96/UBERON_0001596.md +++ b/md/UBERON/96/UBERON_0001596.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001596 * *Label* = intrinsic auricular muscle - * *Definition* = auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.daviddarling.info/encyclopedia/A/auricle.html] + * *Definition* = auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.daviddarling.info/encyclopedia/A/auricle.html ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001796.md b/md/UBERON/96/UBERON_0001796.md index ded6a073f6..cd55532c60 100644 --- a/md/UBERON/96/UBERON_0001796.md +++ b/md/UBERON/96/UBERON_0001796.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001796 * *Label* = aqueous humor of eyeball - * *Definition* = Body substance in liquid state contained in the anterior and posterior chambers of the eyeball[FMA]. The aqueous humour is a thick watery substance filling the space between the lens and the cornea[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58819[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Aqueous_humor] + * *Definition* = Body substance in liquid state contained in the anterior and posterior chambers of the eyeball[FMA]. The aqueous humour is a thick watery substance filling the space between the lens and the cornea[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58819, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Aqueous_humor ] * *Comment* = Note that FMA says A+P chambers, and MA states A chamber. ZFA states A chamber and tha it is produced primarily by dorsal ciliary epithelial cells.To be investigated across taxa. ## Synonyms * aqueous humor - * aqueous humour [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000139] - * humor aquosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58819[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * aqueous humour [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000139 ] + * humor aquosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58819, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MESH:A09.371.060.067.070 * OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA * SCTID:280587006 - * UMLS:C0003662 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Aqueous_Humor] + * UMLS:C0003662 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Aqueous_Humor ] * VHOG:0000548 * Wikipedia:Aqueous_humor * ZFA:0005564 @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The fluid produced by the ciliary process in the eye and occupying the anterior and posterior chambers. It provides nourishment for the lens and cornea and maintains the ocular pressure, and hence the optical integrity of the eyeball. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya (reference 1); Although the eye varies greatly in adaptative details among vertebrates, its basic structure is the same in all. The human eye is representative of the design typical for a tetrapod. (...) A watery aqueous humor fills the spaces in the eye in front of the lens (...) (reference 2).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001896.md b/md/UBERON/96/UBERON_0001896.md index fcc88756e5..2fa95b6aff 100644 --- a/md/UBERON/96/UBERON_0001896.md +++ b/md/UBERON/96/UBERON_0001896.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001896 * *Label* = medulla oblongata - * *Definition* = Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62004[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021550[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bone_marrow_of_ovary_oblongata] + * *Definition* = Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62004, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021550, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bone_marrow_of_ovary_oblongata ] ## Synonyms - * bulbus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62004[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * bulbus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62004, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * bulb - * medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:MY] - * medial orbital cortex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] - * medulla oblonzata [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Medulla_oblongata[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metepencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62004] - * somatic motor areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] - * somatomotor areas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:MO] + * medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:MY ] + * medial orbital cortex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] + * medulla oblonzata [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Medulla_oblongata, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metepencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62004 ] + * somatic motor areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] + * somatomotor areas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:MO ] ## Cross-references @@ -38,14 +38,14 @@ * MESH:A08.186.211.132.810.406 * MIAA:0000111 * NIF_GrossAnatomy:birnlex_957 - * NeuroNames:698 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_957] + * NeuroNames:698 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_957 ] * OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA * OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA * SCTID:279104005 * TAO:0000545 - * UMLS:C0025148 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_957] - * UMLS:C0025148 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Medulla_Oblongata] - * UMLS:C1269575 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_957] + * UMLS:C0025148 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_957 ] + * UMLS:C0025148 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Medulla_Oblongata ] + * UMLS:C1269575 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_957 ] * VHOG:0000181 * Wikipedia:Bone_marrow_of_ovary_oblongata * XAO:0003100 @@ -83,8 +83,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The posterior region of the brain that is continuous with the spinal cord. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-17, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Classical anatomical studies subdivided the vertebrate rhombencephalon into pons and medulla oblongata. (...) The medulla oblongata appears therefore as a tagma, that is, a group of segmental units (pseudorhombomeres, in this case) sharing some morphological and molecular characteristics, and in some aspects different from the segmental units present in adjoining brain regions, pons and spinal cord.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0001996.md b/md/UBERON/96/UBERON_0001996.md index 6de7ac8d20..ebe17242a9 100644 --- a/md/UBERON/96/UBERON_0001996.md +++ b/md/UBERON/96/UBERON_0001996.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001996 * *Label* = elastic cartilage tissue - * *Definition* = Cartilage tissue that is flexible and contains abundant elastic fibers. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000091[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Cartilage tissue that is flexible and contains abundant elastic fibers. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000091, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] ## Synonyms - * elastic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000107] - * elastic cartilage tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000091] - * yellow elastic cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Elastic_cartilage] + * elastic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000107 ] + * elastic cartilage tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000091 ] + * yellow elastic cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Elastic_cartilage ] * yellow elastic cartilage tissue ## Cross-references * FMA:64785 * MA:0000107 - * UMLS:C0682559 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Elastic_Cartilage] + * UMLS:C0682559 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Elastic_Cartilage ] * VSAO:0000091 * Wikipedia:Elastic_cartilage * XAO:0004197 @@ -44,8 +44,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers[FMA:64785]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Cartilage tissue that is flexible and contains abundant elastic fibers.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002196.md b/md/UBERON/96/UBERON_0002196.md index ad7108c321..075acaeeda 100644 --- a/md/UBERON/96/UBERON_0002196.md +++ b/md/UBERON/96/UBERON_0002196.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002196 * *Label* = adenohypophysis - * *Definition* = The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Adenohypophysis[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Adenohypophysis, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: "While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathkes pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head"[NBK53175]. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish[ZFA]. ## Synonyms - * anterior hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001282] + * anterior hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001282 ] * anterior lobe (hypophysis) * anterior lobe of hypophysis * anterior lobe of pituitary * anterior lobe of pituitary gland * anterior pituitary - * lobus anterior (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus anterior hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74627[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lobus anterior (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus anterior hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74627, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pituitary gland, anterior lobe - * AHP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1581[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterior hypothalamic area posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHP] - * anterior hypothalamic area, posterior part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AHP] - * anterior lobe of the pituitary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:APit] - * anterior pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000040] - * cranial lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000496] - * lobus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:407[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus ansae lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AL] - * nucleus of ansa lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AL] - * nucleus of the ansa lenticularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AL] - * pituitary glandanterior lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:AL] - * rostral lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000496] + * AHP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1581, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterior hypothalamic area posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHP ] + * anterior hypothalamic area, posterior part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AHP ] + * anterior lobe of the pituitary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:APit ] + * anterior pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000040 ] + * cranial lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000496 ] + * lobus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:407, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus ansae lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AL ] + * nucleus of ansa lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AL ] + * nucleus of the ansa lenticularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AL ] + * pituitary glandanterior lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:AL ] + * rostral lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000496 ] ## Cross-references @@ -48,12 +48,12 @@ * MA:0000177 * MESH:A06.407.747.608 * NIF_GrossAnatomy:birnlex_1581 - * NeuroNames:407 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1581] + * NeuroNames:407 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1581 ] * SCTID:245532007 * TAO:0001282 - * UMLS:C0032008 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1581] - * UMLS:C0032008 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland] - * UMLS:C1280369 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1581] + * UMLS:C0032008 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1581 ] + * UMLS:C0032008 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland ] + * UMLS:C1280369 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1581 ] * VHOG:0000141 * Wikipedia:Adenohypophysis * ZFA:0001282 @@ -92,8 +92,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002296.md b/md/UBERON/96/UBERON_0002296.md index 568167222d..e88c238d9c 100644 --- a/md/UBERON/96/UBERON_0002296.md +++ b/md/UBERON/96/UBERON_0002296.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002296 * *Label* = dorsal mesentery - * *Definition* = The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_mesentery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mesentery#Development[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_mesentery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mesentery#Development, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsal mesogastrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_mesentery] - * mesenterium dorsale commune [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_mesentery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal mesogastrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_mesentery ] + * mesenterium dorsale commune [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_mesentery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -47,8 +47,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mesentery that originates from the dorsal side of the peritoneal cavity.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002396.md b/md/UBERON/96/UBERON_0002396.md index 45350a3690..7e83d95617 100644 --- a/md/UBERON/96/UBERON_0002396.md +++ b/md/UBERON/96/UBERON_0002396.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002396 * *Label* = vomer - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vomer] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vomer ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * vomer bone - * prevomer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000308] + * prevomer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000308 ] ## Cross-references @@ -19,7 +19,7 @@ * OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA * SCTID:272678009 * TAO:0000308 - * UMLS:C0242403 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vomer] + * UMLS:C0242403 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vomer ] * Wikipedia:Vomer * ZFA:0000308 * http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg @@ -53,8 +53,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: overlaps mesethmoid-vomer joint (TAO:0001680)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In bony fish, the vomers are flattened, paired, bones forming the anterior part of the roof of the mouth, just behind the premaxillary bones. In many species, they have teeth, supplementing those in the jaw proper; in some extinct species the teeth on the vomers were actually larger than the primary set. In amphibians and reptiles, the vomers become narrower, due to the presence of the enlarged choanae (the inner part of the nostrils) on either side, and they may extend further back in the jaw. They are typically small in birds, where they form the upper hind part of the beak, again being located between the choanae. In mammals, the vomers have become narrower still, and are fused into a single, vertically oriented bone. The development of the hard palate beneath the vomer means that the bone is now located in a nasal chamber, separate from the mouth[WP] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The vomer is paired in some taxa (e.g., Amia) while unpaired in others (e.g., teleosts).[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002496.md b/md/UBERON/96/UBERON_0002496.md index abab8275bd..e534ce47cd 100644 --- a/md/UBERON/96/UBERON_0002496.md +++ b/md/UBERON/96/UBERON_0002496.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002496 * *Label* = stapes base - * *Definition* = The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/base+of+stapes] + * *Definition* = The flat portion of the stirrup of the ear that fits in the oval window between the middle and inner ear. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/base+of+stapes ] ## Synonyms - * base of stapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002804] - * basis stapedis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * base of stapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002804 ] + * basis stapedis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * stapes footpiece - * stapes footplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002804] - * footplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52769[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * stapes footplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002804 ] + * footplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52769, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -28,7 +28,7 @@ * [endoderm-derived structure](../../UBERON/19/UBERON_0004119.md) * [zone of bone organ](../../UBERON/13/UBERON_0005913.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [stapes](../../UBERON/87/UBERON_0001687.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [stapes bone](../../UBERON/87/UBERON_0001687.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002596.md b/md/UBERON/96/UBERON_0002596.md index 68cf4ee234..86c96e7c80 100644 --- a/md/UBERON/96/UBERON_0002596.md +++ b/md/UBERON/96/UBERON_0002596.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002596 * *Label* = ventral posterior nucleus - * *Definition* = The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ventral_posterior_nucleus] + * *Definition* = The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ventral_posterior_nucleus ] ## Synonyms - * nucleus ventrales posteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1116] - * nucleus ventralis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1116] - * ventral posterior thalamic nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62187] - * ventrobasal complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62187] - * ventrobasal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62187] - * VP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * VPN [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004373] - * nuclei ventrales posteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:343[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventral posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventral posterior complex of the thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] - * ventroposterior inferior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004374] - * ventroposterior nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004373] - * ventroposterior nucleus of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:VP] + * nucleus ventrales posteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1116 ] + * nucleus ventralis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1116 ] + * ventral posterior thalamic nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62187 ] + * ventrobasal complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62187 ] + * ventrobasal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62187 ] + * VP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * VPN [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004373 ] + * nuclei ventrales posteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:343, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventral posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventral posterior complex of the thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] + * ventroposterior inferior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004374 ] + * ventroposterior nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004373 ] + * ventroposterior nucleus of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:VP ] ## Cross-references @@ -30,9 +30,9 @@ * EV:0100209 * FMA:62187 * NIF_GrossAnatomy:birnlex_1116 - * NeuroNames:343 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1116] + * NeuroNames:343 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1116 ] * SCTID:279147005 - * UMLS:C0175276 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1116] + * UMLS:C0175276 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1116 ] * Wikipedia:Ventral_posterior_nucleus * http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png @@ -54,8 +54,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002696.md b/md/UBERON/96/UBERON_0002696.md index e5ac55e0c3..5661dff6ac 100644 --- a/md/UBERON/96/UBERON_0002696.md +++ b/md/UBERON/96/UBERON_0002696.md @@ -7,10 +7,10 @@ ## Synonyms * parabigeminal area (mai) - * CnF [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1430[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area parabigeminalis (Mai) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:502[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cuneiform nucleus (Castaldi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:502] - * nucleus cuneiformis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:502[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * CnF [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1430, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area parabigeminalis (Mai) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:502, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cuneiform nucleus (Castaldi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:502 ] + * nucleus cuneiformis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:502, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,8 +20,8 @@ * BM:MB-CNF * FMA:72427 * NIF_GrossAnatomy:birnlex_1430 - * NeuroNames:502 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1430] - * UMLS:C0175396 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1430] + * NeuroNames:502 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1430 ] + * UMLS:C0175396 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1430 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002796.md b/md/UBERON/96/UBERON_0002796.md index 759f255216..790910656c 100644 --- a/md/UBERON/96/UBERON_0002796.md +++ b/md/UBERON/96/UBERON_0002796.md @@ -7,19 +7,19 @@ ## Synonyms - * motor branch of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52612] + * motor branch of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52612 ] * motor root of nervus v - * radix motoria (Nervus trigeminus [V]) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52612] - * dorsal motor root of v [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000650] - * minor root of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608] - * motor root of N. V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608] - * motor root of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608] - * nervus trigemini radix motoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus trigeminus, radix motoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nervus trigeminus, radix motorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * portio minor nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * portio minor of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * radix motoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:608[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * radix motoria (Nervus trigeminus [V]) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52612 ] + * dorsal motor root of v [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000650 ] + * minor root of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608 ] + * motor root of N. V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608 ] + * motor root of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608 ] + * nervus trigemini radix motoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus trigeminus, radix motoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nervus trigeminus, radix motorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * portio minor nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * portio minor of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * radix motoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:608, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -29,10 +29,10 @@ * BAMS:moV * FMA:52612 * NIF_GrossAnatomy:birnlex_1717 - * NeuroNames:608 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1717] + * NeuroNames:608 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1717 ] * SCTID:280189001 * TAO:0000650 - * UMLS:C0228707 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1717] + * UMLS:C0228707 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1717 ] * ZFA:0000650 ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002896.md b/md/UBERON/96/UBERON_0002896.md index 457eafbb60..567ecb0e31 100644 --- a/md/UBERON/96/UBERON_0002896.md +++ b/md/UBERON/96/UBERON_0002896.md @@ -6,17 +6,17 @@ ## Synonyms - * telo-diencephalic fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83726] - * tdf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4001[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fissura telo-diencephalica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:28[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * telo-diencephalic fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83726 ] + * tdf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4001, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fissura telo-diencephalica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:28, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:tdf * FMA:83726 * NIF_GrossAnatomy:birnlex_4001 - * NeuroNames:28 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4001] - * UMLS:C0262340 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4001] + * NeuroNames:28 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4001 ] + * UMLS:C0262340 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4001 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0002996.md b/md/UBERON/96/UBERON_0002996.md index 6e9679eb99..9ab982e944 100644 --- a/md/UBERON/96/UBERON_0002996.md +++ b/md/UBERON/96/UBERON_0002996.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002996 * *Label* = nucleus of optic tract - * *Definition* = Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive inpu from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_868] + * *Definition* = Predominantly gray matter structure consisting of large multipoloar cells lying aong axons of the brachium of the superior colliculus, lyaing adjaent to the dorsal terminal nucleus of the accessory optic system. In several species, cells of this nucleus receive inpu from the contralateral retina (Sefton and Dreher in Paxinos, G. The rat nervous system, 1995, pg. 862). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_868 ] ## Synonyms - * large-celled nucleus of optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72403] - * lentiform nucleus of pretectal area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72403] - * nucleus of the optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_868] - * optic tract nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72403] - * nucleus magnocellularis tractus optici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:470[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus tractus optici [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:470[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * large-celled nucleus of optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72403 ] + * lentiform nucleus of pretectal area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72403 ] + * nucleus of the optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_868 ] + * optic tract nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72403 ] + * nucleus magnocellularis tractus optici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:470, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus tractus optici [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:470, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,8 +22,8 @@ * BAMS:OTN * FMA:72403 * NIF_GrossAnatomy:birnlex_868 - * NeuroNames:470 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_868] - * UMLS:C0175356 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_868] + * NeuroNames:470 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_868 ] + * UMLS:C0175356 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_868 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003096.md b/md/UBERON/96/UBERON_0003096.md index 1d7739a8e6..e725439927 100644 --- a/md/UBERON/96/UBERON_0003096.md +++ b/md/UBERON/96/UBERON_0003096.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003096 * *Label* = middle lateral line - * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms @@ -38,8 +38,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of middle lateral line system (TAO:0005114)[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The mechanosensory lateral line system is widely distributed in aquatic anamniotes. It was apparently present in the earliest vertebrates, as it has been identified in agnathans, cartilaginous fishes, bony fishes, lungfishes, the crossopterygian Latimeria, and aquatic amphibians.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003196.md b/md/UBERON/96/UBERON_0003196.md index 603d0677fb..e6fe4f1ed5 100644 --- a/md/UBERON/96/UBERON_0003196.md +++ b/md/UBERON/96/UBERON_0003196.md @@ -7,7 +7,7 @@ ## Synonyms - * intervein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004769] + * intervein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004769 ] ## Cross-references @@ -28,9 +28,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004769 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0001091 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003196 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_0003296.md b/md/UBERON/96/UBERON_0003296.md index d84d28c34e..8cd75b48bf 100644 --- a/md/UBERON/96/UBERON_0003296.md +++ b/md/UBERON/96/UBERON_0003296.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003296 * *Label* = gland of diencephalon - * *Definition* = A gland that is part of a diencephalon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a diencephalon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * between brain gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * diencephalon gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of between brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of interbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gland of mature diencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * interbrain gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mature diencephalon gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * between brain gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * diencephalon gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of between brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of interbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gland of mature diencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * interbrain gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mature diencephalon gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003396.md b/md/UBERON/96/UBERON_0003396.md index 33bfdc0617..1bf3077ac4 100644 --- a/md/UBERON/96/UBERON_0003396.md +++ b/md/UBERON/96/UBERON_0003396.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003396 * *Label* = mesentery of colon - * *Definition* = A mesentery that is part of a colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * colon mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large intestinal mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14645] - * mesentery of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mesentery of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14645] + * colon mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large intestinal mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14645 ] + * mesentery of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mesentery of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14645 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003496.md b/md/UBERON/96/UBERON_0003496.md index 04082c828c..4342918c72 100644 --- a/md/UBERON/96/UBERON_0003496.md +++ b/md/UBERON/96/UBERON_0003496.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003496 * *Label* = head blood vessel - * *Definition* = A blood vessel that is part of a head [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a head [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * adult head blood vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of adult head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * blood vessel of head [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * adult head blood vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of adult head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * blood vessel of head [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003596.md b/md/UBERON/96/UBERON_0003596.md index c1d5d8c410..9f0e6d2f8c 100644 --- a/md/UBERON/96/UBERON_0003596.md +++ b/md/UBERON/96/UBERON_0003596.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003596 * *Label* = ankle connective tissue - * *Definition* = A portion of connective tissue that is part of an ankle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of an ankle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ankle portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ankle textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tarsal region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * textus connectivus of ankle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * ankle portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ankle textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tarsal region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * textus connectivus of ankle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tarsal region](../../UBERON/54/UBERON_0004454.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003696.md b/md/UBERON/96/UBERON_0003696.md index 135eaf3a59..196adaa98c 100644 --- a/md/UBERON/96/UBERON_0003696.md +++ b/md/UBERON/96/UBERON_0003696.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003696 * *Label* = metatarsophalangeal joint - * *Definition* = The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsophalangeal_articulations] + * *Definition* = The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsophalangeal_articulations ] * *Comment* = Editor notes: we follow FMA in making these joints part of digits ## Synonyms - * articulationes metatarsophalangeae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsophalangeal_articulations[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * metatarsal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35222] - * metatarsalphalangeal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsophalangeal_articulations] - * metatarsophalangeal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsophalangeal_articulations] - * metatarsophalangeal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Metatarsophalangeal_articulations] + * articulationes metatarsophalangeae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsophalangeal_articulations, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * metatarsal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35222 ] + * metatarsalphalangeal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsophalangeal_articulations ] + * metatarsophalangeal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsophalangeal_articulations ] + * metatarsophalangeal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Metatarsophalangeal_articulations ] ## Cross-references @@ -23,7 +23,7 @@ * SCTID:239747005 * SCTID:302535003 * SCTID:370752004 - * UMLS:C0025589 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Metatarsophalangeal_Joint] + * UMLS:C0025589 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Metatarsophalangeal_Joint ] * Wikipedia:Metatarsophalangeal_articulations * galen:MetatarsoPhalangealJoint * http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png @@ -41,15 +41,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [distal phalanx of pes](../../UBERON/67/UBERON_0003867.md) and [connects](../../ts/core#connects.md) some [metatarsal bone](../../UBERON/48/UBERON_0001448.md) and [skeletal joint](../../UBERON/82/UBERON_0000982.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0003896.md b/md/UBERON/96/UBERON_0003896.md index a9c0badfcb..e1630c4142 100644 --- a/md/UBERON/96/UBERON_0003896.md +++ b/md/UBERON/96/UBERON_0003896.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003896 * *Label* = obsolete muscle of body wall - * *Definition* = A muscle organ that is part of a body wall [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a body wall [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = obsoleted as it grouped together a worm-specific structure (BTO) with the vertebrate structure (which develops from the myotome) ## Synonyms - * wall muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001863] + * wall muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001863 ] ## Cross-references @@ -31,9 +31,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = BTO:0001863 * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0004462 * *[consider](../../er/oboInOwl#consider.md)* = WBbt:0005813 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003896 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_0003996.md b/md/UBERON/96/UBERON_0003996.md index e9162bd60a..09c415ef06 100644 --- a/md/UBERON/96/UBERON_0003996.md +++ b/md/UBERON/96/UBERON_0003996.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003996 * *Label* = cervical vertebra 1 arcus anterior - * *Definition* = The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009879] + * *Definition* = The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009879 ] ## Synonyms - * anterior arch of atlas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002954] - * arcus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009879] - * arcus anterior atlantis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002954] - * cervical vertebra 1 arcus anterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002954] - * arcus anterior atlantis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_arch_of_atlas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * anterior arch of atlas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002954 ] + * arcus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009879 ] + * arcus anterior atlantis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002954 ] + * cervical vertebra 1 arcus anterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002954 ] + * arcus anterior atlantis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_arch_of_atlas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005209 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004096.md b/md/UBERON/96/UBERON_0004096.md index 37dd4c1f9a..b43a3b16f2 100644 --- a/md/UBERON/96/UBERON_0004096.md +++ b/md/UBERON/96/UBERON_0004096.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004096 * *Label* = odontoid process of cervical vertebra 2 - * *Definition* = The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:238[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003310[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wikipedia:Dens_(anatomy)] + * *Definition* = The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:238, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003310, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wikipedia:Dens_(anatomy) ] * *Comment* = TODO check AAO:0000721 odontoid_process -- Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen ## Synonyms - * axis dens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24043] - * axis odontoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002872] - * cervical vertebra 2 odontoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002872] - * dens [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:26535] - * dens of axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24043] - * odontoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24043] - * odontoid process of axis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:24043] - * odontoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wikipedia:Dens_(anatomy)] + * axis dens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24043 ] + * axis odontoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002872 ] + * cervical vertebra 2 odontoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002872 ] + * dens [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:26535 ] + * dens of axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24043 ] + * odontoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24043 ] + * odontoid process of axis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:24043 ] + * odontoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wikipedia:Dens_(anatomy) ] ## Cross-references @@ -27,7 +27,7 @@ * MESH:A02.835.232.834.151.383.668 * OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA * SCTID:181899003 - * UMLS:C0028881 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Odontoid_Process] + * UMLS:C0028881 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Odontoid_Process ] * Wikipedia:Dens_(anatomy) * ncithesaurus:Odontoid_Process @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen.[AAO] * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005210 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004196.md b/md/UBERON/96/UBERON_0004196.md index b186ebdd53..8a222d1899 100644 --- a/md/UBERON/96/UBERON_0004196.md +++ b/md/UBERON/96/UBERON_0004196.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004196 * *Label* = proximal convoluted tubule segment 1 - * *Definition* = The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072031[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855] + * *Definition* = The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072031, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855 ] ## Synonyms * S1 portion of renal tubule * S1 portion of tubule - * proximal tubule segment 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002612] - * segment 1 of proximal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29657] - * S1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072031] + * proximal tubule segment 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002612 ] + * segment 1 of proximal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29657 ] + * S1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072031 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006432 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004296.md b/md/UBERON/96/UBERON_0004296.md index e257544867..e8c77a99fe 100644 --- a/md/UBERON/96/UBERON_0004296.md +++ b/md/UBERON/96/UBERON_0004296.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004296 * *Label* = respiratory system lymphatic vessel smooth muscle - * *Definition* = A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A lymphatic vessel smooth muscle that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * smooth muscle of lymph vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * smooth muscle of lymph vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system lymphatic vessel](../../UBERON/56/UBERON_0003456.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004396.md b/md/UBERON/96/UBERON_0004396.md index d1f212f34d..9d1d6ea842 100644 --- a/md/UBERON/96/UBERON_0004396.md +++ b/md/UBERON/96/UBERON_0004396.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004396 * *Label* = epiphysis of second metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone of digit 2 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metatarsal 2 epiphysis - * second metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:33816] + * second metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:33816 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 2](../../UBERON/51/UBERON_0003651.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004496.md b/md/UBERON/96/UBERON_0004496.md index 9e34263ecc..e3dbd843af 100644 --- a/md/UBERON/96/UBERON_0004496.md +++ b/md/UBERON/96/UBERON_0004496.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004496 * *Label* = skeletal muscle tissue of iliacus - * *Definition* = A portion of skeletal muscle tissue that is part of a iliacus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a iliacus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [iliacus muscle](../../UBERON/69/UBERON_0001369.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004696.md b/md/UBERON/96/UBERON_0004696.md index 747bf186ab..60c4640fe4 100644 --- a/md/UBERON/96/UBERON_0004696.md +++ b/md/UBERON/96/UBERON_0004696.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004696 * *Label* = venous system smooth muscle - * *Definition* = A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of smooth muscle tissue that is part of a venous system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [venous system](../../UBERON/82/UBERON_0004582.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004796.md b/md/UBERON/96/UBERON_0004796.md index ca1ec2f74b..80125233da 100644 --- a/md/UBERON/96/UBERON_0004796.md +++ b/md/UBERON/96/UBERON_0004796.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004796 * *Label* = prostate gland secretion - * *Definition* = A secretion of the prostate this is slightly alkaline fluid, milky or white in appearance. Usually constitutes 2030% of the volume of the semen along with spermatozoa and seminal vesicle fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostate#Secretions] + * *Definition* = A secretion of the prostate this is slightly alkaline fluid, milky or white in appearance. Usually constitutes 2030% of the volume of the semen along with spermatozoa and seminal vesicle fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostate#Secretions ] * *Comment* = Taxon notes: Prostatic secretions vary among species. They are generally composed of simple sugars and are often slightly alkaline. ## Synonyms - * prostate secretion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostatic fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:66884] - * secretion of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * secretion of prostate gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * prostate fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001232] + * prostate secretion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostatic fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:66884 ] + * secretion of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * secretion of prostate gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * prostate fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001232 ] ## Cross-references * FMA:66884 * MA:0002525 - * UMLS:C1709733 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostate_Gland_Secretion] + * UMLS:C1709733 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostate_Gland_Secretion ] * Wikipedia:Prostate#Secretions * ncithesaurus:Prostate_Gland_Secretion @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bodily secretion](../../UBERON/56/UBERON_0000456.md) and [produced_by](../../RO/01/RO_0003001.md) some [prostate gland](../../UBERON/67/UBERON_0002367.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0010142 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004896.md b/md/UBERON/96/UBERON_0004896.md index 7540bccb4d..e3a1c08ce9 100644 --- a/md/UBERON/96/UBERON_0004896.md +++ b/md/UBERON/96/UBERON_0004896.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004896 * *Label* = right lung accessory lobe lobar bronchus - * *Definition* = The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012636] + * *Definition* = The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012636 ] ## Synonyms - * lobar bronchus of right lung accessory lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000239] - * lobar bronchus of accessory lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17982] + * lobar bronchus of right lung accessory lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000239 ] + * lobar bronchus of accessory lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17982 ] ## Cross-references @@ -26,7 +26,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [lobar bronchus](../../UBERON/83/UBERON_0002183.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) ## Other Logical Axioms @@ -34,8 +34,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0004996.md b/md/UBERON/96/UBERON_0004996.md index 8c4443259d..d5b89fe787 100644 --- a/md/UBERON/96/UBERON_0004996.md +++ b/md/UBERON/96/UBERON_0004996.md @@ -3,49 +3,49 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004996 * *Label* = mucosa of cardia of stomach - * *Definition* = A mucosa that is part of a cardia of stomach [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a cardia of stomach [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * cardia of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardia of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardia of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardia of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardial part of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardial part of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardial part of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * cardial part of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric cardia mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric cardia mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric cardia mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric cardia organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of cardial part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of gastric cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of cardia of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of cardial part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of gastric cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pars cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of pars cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of cardia of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of cardial part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of gastric cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pars cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of cardia of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of cardial part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of gastric cardia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pars cardiaca (gaster) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach cardiac region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars cardiaca (gaster) mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars cardiaca (gaster) mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars cardiaca (gaster) mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pars cardiaca (gaster) organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach cardiac region mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach cardiac region mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach cardiac region mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach cardiac region organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * cardia of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardia of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardia of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardia of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardial part of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardial part of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardial part of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * cardial part of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric cardia mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric cardia mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric cardia mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric cardia organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of cardial part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of gastric cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of cardia of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of cardial part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of gastric cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pars cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of pars cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of cardia of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of cardial part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of gastric cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pars cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of cardia of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of cardial part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of gastric cardia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pars cardiaca (gaster) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach cardiac region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars cardiaca (gaster) mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars cardiaca (gaster) mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars cardiaca (gaster) mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pars cardiaca (gaster) organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach cardiac region mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach cardiac region mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach cardiac region mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach cardiac region organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -61,15 +61,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardia of stomach](../../UBERON/62/UBERON_0001162.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005096.md b/md/UBERON/96/UBERON_0005096.md index 6f3d9a58ca..079fce90ae 100644 --- a/md/UBERON/96/UBERON_0005096.md +++ b/md/UBERON/96/UBERON_0005096.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005096 * *Label* = descending thin limb - * *Definition* = The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072022[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] + * *Definition* = The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072022, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] ## Synonyms * descending thin limb of loop of Henle * loop of Henle descending thin limb - * loop of henle thin descending limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002625] - * pars descendens (tubulus attenuatus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17719] + * loop of henle thin descending limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002625 ] + * pars descendens (tubulus attenuatus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17719 ] * thin descending limb - * descending limb of henle%27s loop [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] - * descending limb of loop of henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] - * thin descending limb of loop of henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] - * thin descending limb of the loop of henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] - * thin descending loop of henle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Descending_limb_of_loop_of_Henle] + * descending limb of henle%27s loop [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] + * descending limb of loop of henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] + * thin descending limb of loop of henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] + * thin descending limb of the loop of henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] + * thin descending loop of henle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Descending_limb_of_loop_of_Henle ] ## Cross-references @@ -48,8 +48,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0005165 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005196.md b/md/UBERON/96/UBERON_0005196.md index 5e8e6b5cd7..448b827fce 100644 --- a/md/UBERON/96/UBERON_0005196.md +++ b/md/UBERON/96/UBERON_0005196.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005196 * *Label* = spleen germinal center - * *Definition* = A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CL:tm[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/6] + * *Definition* = A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CL:tm, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/6 ] ## Synonyms * germinal center of spleen - * spleen GC [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008474] - * spleen follicle center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008474] - * splenic germinal center [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0008474] + * spleen GC [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008474 ] + * spleen follicle center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008474 ] + * splenic germinal center [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0008474 ] ## Cross-references * MA:0000764 - * UMLS:C1710156 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spleen_Germinal_Center] + * UMLS:C1710156 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spleen_Germinal_Center ] * ncithesaurus:Spleen_Germinal_Center ## Subsets @@ -30,15 +30,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [germinal center](../../UBERON/54/UBERON_0010754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spleen](../../UBERON/06/UBERON_0002106.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005296.md b/md/UBERON/96/UBERON_0005296.md index 0b3aa23702..6c750f55ab 100644 --- a/md/UBERON/96/UBERON_0005296.md +++ b/md/UBERON/96/UBERON_0005296.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005296 * *Label* = ovary sex cord - * *Definition* = structures that develop from sex cords in the female. After further development they become the ovarian follicles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cortical_cords] + * *Definition* = structures that develop from sex cords in the female. After further development they become the ovarian follicles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cortical_cords ] * *Comment* = TODO check secondary vs cortical vs ovary ## Synonyms * ovigerous cord - * ovigerous cords [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001339[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * ovigerous cords [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001339, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * cortical cord * cortical sex cord * ovary primitive sex cord @@ -20,7 +20,7 @@ * EHDAA2:0001363 * EHDAA:8130 * EMAPA:31058 - * UMLS:C1511527 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cortical_Cord] + * UMLS:C1511527 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cortical_Cord ] * VHOG:0001339 * Wikipedia:Cortical_cords * ncithesaurus:Cortical_Cord @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [sex cord](../../UBERON/95/UBERON_0005295.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005396.md b/md/UBERON/96/UBERON_0005396.md index b4514506c9..a8b904628d 100644 --- a/md/UBERON/96/UBERON_0005396.md +++ b/md/UBERON/96/UBERON_0005396.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005396 * *Label* = carotid artery segment - * *Definition* = One of: the common carotid artery, or its branches, the external and internal carotid arteries. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Carotid_artery[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3486870&group_id=76834&atid=994764] + * *Definition* = One of: the common carotid artery, or its branches, the external and internal carotid arteries. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Carotid_artery, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3486870&group_id=76834&atid=994764 ] * *Comment* = Editor/usage notes: This is a generic grouping class that is the superclass of the trunks/branches of the common carotid artery. Note that AOs vary widely in how they divide up and generalize arteries ## Synonyms - * carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001925] - * subdivision of common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70504] - * common carotid arterial subdivision [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:70504] + * carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001925 ] + * subdivision of common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70504 ] + * common carotid arterial subdivision [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:70504 ] ## Cross-references @@ -28,7 +28,7 @@ * SCTID:362040006 * SCTID:69105007 * TAO:0000097 - * UMLS:C0007272 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Carotid_Artery] + * UMLS:C0007272 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Carotid_Artery ] * VHOG:0000266 * Wikipedia:Carotid_artery * ZFA:0000097 @@ -55,8 +55,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995.[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005496.md b/md/UBERON/96/UBERON_0005496.md index f3d4f838f7..6f9555b818 100644 --- a/md/UBERON/96/UBERON_0005496.md +++ b/md/UBERON/96/UBERON_0005496.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005496 * *Label* = neural tube lateral wall - * *Definition* = Portion of tissue on the side of the lumen of the neural tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001435] + * *Definition* = Portion of tissue on the side of the lumen of the neural tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001435 ] ## Synonyms - * lateral wall neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001435] + * lateral wall neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001435 ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005696.md b/md/UBERON/96/UBERON_0005696.md index 68714773f6..9bf8f4b61d 100644 --- a/md/UBERON/96/UBERON_0005696.md +++ b/md/UBERON/96/UBERON_0005696.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005696 * *Label* = pedal digit 2 mesenchyme - * *Definition* = Mesenchyme that is part of a pedal digit 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pedal digit 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 2 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 2 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 2](../../UBERON/32/UBERON_0003632.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005796.md b/md/UBERON/96/UBERON_0005796.md index b805274863..9fd7b4c740 100644 --- a/md/UBERON/96/UBERON_0005796.md +++ b/md/UBERON/96/UBERON_0005796.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005796 * *Label* = duplex uterus - * *Definition* = the duplex uterus is doubled, and is found in monotremes, marsupials, elephants and rodents [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.shsu.edu/~bio_mlt/Chap14.html] + * *Definition* = the duplex uterus is doubled, and is found in monotremes, marsupials, elephants and rodents [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.shsu.edu/~bio_mlt/Chap14.html ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0005896.md b/md/UBERON/96/UBERON_0005896.md index efc653ae32..995719a343 100644 --- a/md/UBERON/96/UBERON_0005896.md +++ b/md/UBERON/96/UBERON_0005896.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005896 * *Label* = jointed/prehensile appendage - * *Definition* = A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035108[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Limb_(anatomy)] + * *Definition* = A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035108, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Limb_(anatomy) ] * *Comment* = Usage notes: this class was originally introduced to account for the previously vague use of the term 'limb' in GO. ## Synonyms - * extremitaet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001492] - * extremities [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * extremitaet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001492 ] + * extremities [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * extremity - * limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000172[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001492[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0035108] + * limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000172, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001492, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0035108 ] ## Cross-references @@ -33,9 +33,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = AEO:0000172 * *[consider](../../er/oboInOwl#consider.md)* = ncithesaurus:Extremities - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005896 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_0005996.md b/md/UBERON/96/UBERON_0005996.md index aa580826d0..31023f35ab 100644 --- a/md/UBERON/96/UBERON_0005996.md +++ b/md/UBERON/96/UBERON_0005996.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005996 * *Label* = mitral valve cusp - * *Definition* = the two fibrous components and associated flaps of the mitral valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010614] + * *Definition* = the two fibrous components and associated flaps of the mitral valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010614 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cusp of cardiac valve](../../UBERON/09/UBERON_0006009.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mitral valve](../../UBERON/35/UBERON_0002135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006096.md b/md/UBERON/96/UBERON_0006096.md index 9db823f710..d9cbd6aeb7 100644 --- a/md/UBERON/96/UBERON_0006096.md +++ b/md/UBERON/96/UBERON_0006096.md @@ -6,28 +6,28 @@ ## Synonyms - * B09-42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1775] - * BA42 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1775] - * Brodmann area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68639] - * Brodmann area 42, posterior transverse temporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1775] - * Brodmann's area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1589] - * area 42 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68639] - * area 42 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1589] - * area 42 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1775] - * area temporalis transversa posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1775] - * auditory association area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1589] - * posterior transverse temporal area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68639] - * posterior transverse termporal area 42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1589] - * B09-42 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1775[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * B09-42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1775 ] + * BA42 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1775 ] + * Brodmann area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68639 ] + * Brodmann area 42, posterior transverse temporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1775 ] + * Brodmann's area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1589 ] + * area 42 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68639 ] + * area 42 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1589 ] + * area 42 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1775 ] + * area temporalis transversa posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1775 ] + * auditory association area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1589 ] + * posterior transverse temporal area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68639 ] + * posterior transverse termporal area 42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1589 ] + * B09-42 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1775, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * FMA:68639 * NIF_GrossAnatomy:birnlex_1589 * NIF_GrossAnatomy:birnlex_1775 - * NeuroNames:96 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1589] - * UMLS:C1272506 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1775] + * NeuroNames:96 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1589 ] + * UMLS:C1272506 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1775 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013575 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006196.md b/md/UBERON/96/UBERON_0006196.md index 44f05b8d11..5602d55f04 100644 --- a/md/UBERON/96/UBERON_0006196.md +++ b/md/UBERON/96/UBERON_0006196.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006196 * *Label* = mesonephric sinus - * *Definition* = A renal sinus that is part of a mesonephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A renal sinus that is part of a mesonephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = todo - check relationship to renal sinus, add definition ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [mesonephros](../../UBERON/80/UBERON_0000080.md) and [renal sinus](../../UBERON/71/UBERON_0006171.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006296.md b/md/UBERON/96/UBERON_0006296.md index 9ae7ebb872..328d6ce2d2 100644 --- a/md/UBERON/96/UBERON_0006296.md +++ b/md/UBERON/96/UBERON_0006296.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006296 * *Label* = subcardinal vein - * *Definition* = a vein in the mammalian embryo or the adult of some lower vertebrates that is located on each side of the abdominal region ventromedial to the mesonephros and that in mammals participates in the formation of the inferior vena cava and the renal vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.merriam-webster.com/medical/subcardinal%20vein] + * *Definition* = a vein in the mammalian embryo or the adult of some lower vertebrates that is located on each side of the abdominal region ventromedial to the mesonephros and that in mammals participates in the formation of the inferior vena cava and the renal vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.merriam-webster.com/medical/subcardinal%20vein ] * *Comment* = TBD: part of cardinal system? ## Synonyms @@ -14,7 +14,7 @@ * EHDAA:2631 * EMAPA:16829 * SCTID:308830006 - * UMLS:C0231088 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subcardinal_Vein] + * UMLS:C0231088 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subcardinal_Vein ] * VHOG:0001336 * ncithesaurus:Subcardinal_Vein @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006496.md b/md/UBERON/96/UBERON_0006496.md index 890018340c..a73d14e627 100644 --- a/md/UBERON/96/UBERON_0006496.md +++ b/md/UBERON/96/UBERON_0006496.md @@ -7,8 +7,8 @@ ## Synonyms * osseous external acoustic meatus - * osseous external acoustic tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61290] - * osseous part of external acoustic meatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61290] + * osseous external acoustic tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61290 ] + * osseous part of external acoustic meatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61290 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006596.md b/md/UBERON/96/UBERON_0006596.md index 1970869766..b7f22f300b 100644 --- a/md/UBERON/96/UBERON_0006596.md +++ b/md/UBERON/96/UBERON_0006596.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006696.md b/md/UBERON/96/UBERON_0006696.md index 2f18d93822..82b992850e 100644 --- a/md/UBERON/96/UBERON_0006696.md +++ b/md/UBERON/96/UBERON_0006696.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006696 * *Label* = mammillothalamic axonal tract - * *Definition* = A fiber pathway that originates from neurons in the posterior hypothalamic region and projects to various nuclei of the anterior nuclear group of the thalamus. It is a composite structure that consists of the mammillothalamic tract of the hypothalamus and the mammillothalamic tract of the thalamus (Carpenter-1983). (from Brain Info.org) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:nlx_anat_1010016] + * *Definition* = A fiber pathway that originates from neurons in the posterior hypothalamic region and projects to various nuclei of the anterior nuclear group of the thalamus. It is a composite structure that consists of the mammillothalamic tract of the hypothalamus and the mammillothalamic tract of the thalamus (Carpenter-1983). (from Brain Info.org) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:nlx_anat_1010016 ] * *Comment* = The mammillothalamic fasciculus arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus [WP] ## Synonyms - * fasciculus mammillothalamicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mammillothalamic fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83849] - * mammillothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83849] - * vicq d'azyr's bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83849] - * bundle of vicq d%27azyr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] - * bundle of vicq d%e2%80%99azyr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] - * fasciculus mammillothalamicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mamillo-thalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] - * mammillo-thalamic fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] - * mammillo-thalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mt] - * mammillothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] - * thalamomammillary fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mammillothalamic_fasciculus] + * fasciculus mammillothalamicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mammillothalamic fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83849 ] + * mammillothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83849 ] + * vicq d'azyr's bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83849 ] + * bundle of vicq d%27azyr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] + * bundle of vicq d%e2%80%99azyr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] + * fasciculus mammillothalamicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mamillo-thalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] + * mammillo-thalamic fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] + * mammillo-thalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mt ] + * mammillothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] + * thalamomammillary fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mammillothalamic_fasciculus ] ## Cross-references @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit[GO][GO:0061374]. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0009642 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0006796.md b/md/UBERON/96/UBERON_0006796.md index 94904baa33..e325932859 100644 --- a/md/UBERON/96/UBERON_0006796.md +++ b/md/UBERON/96/UBERON_0006796.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006796 * *Label* = cephalopod optic lobe - * *Definition* = Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] + * *Definition* = Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587 ] ## Synonyms - * optic lobe [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * optic lobe [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0007196.md b/md/UBERON/96/UBERON_0007196.md index b46bbf0ad2..cbf430dd0c 100644 --- a/md/UBERON/96/UBERON_0007196.md +++ b/md/UBERON/96/UBERON_0007196.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007196 * *Label* = tracheobronchial tree - * *Definition* = the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Tracheobronchial_tree] + * *Definition* = the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Tracheobronchial_tree ] ## Synonyms - * tracheobronchial system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0005607] + * tracheobronchial system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0005607 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004102 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0007296.md b/md/UBERON/96/UBERON_0007296.md index 71725ce594..918631b549 100644 --- a/md/UBERON/96/UBERON_0007296.md +++ b/md/UBERON/96/UBERON_0007296.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007296 * *Label* = presumptive rhombomere 2 - * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a rhombomere 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [rhombomere 2](../../UBERON/69/UBERON_0005569.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0008196.md b/md/UBERON/96/UBERON_0008196.md index dd4eefc4b5..09f9314fae 100644 --- a/md/UBERON/96/UBERON_0008196.md +++ b/md/UBERON/96/UBERON_0008196.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008196 * *Label* = muscle of pectoral girdle - * *Definition* = A muscle organ that is part of a pectoral girdle region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a pectoral girdle region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: EMAPA has both non-skeletal and skeletal types, with the non-skeletal also including a chest muscle, so we place the skeletal class here as the most accurate ## Synonyms - * muscle of shoulder girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37347] - * pectoral girdle muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37347] + * muscle of shoulder girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37347 ] + * pectoral girdle muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37347 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0008296.md b/md/UBERON/96/UBERON_0008296.md index 6acc14b63a..513bc5ff9a 100644 --- a/md/UBERON/96/UBERON_0008296.md +++ b/md/UBERON/96/UBERON_0008296.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008296 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_0008596.md b/md/UBERON/96/UBERON_0008596.md index 7d1aabd0d7..6cb84dd474 100644 --- a/md/UBERON/96/UBERON_0008596.md +++ b/md/UBERON/96/UBERON_0008596.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008596 * *Label* = mentalis - * *Definition* = The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the 'pouting muscle. ' Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mentalis] + * *Definition* = The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the 'pouting muscle. ' Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mentalis ] ## Synonyms - * mentalis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mentalis] - * musculus mentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Mentalis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mentalis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mentalis ] + * musculus mentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Mentalis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0008896.md b/md/UBERON/96/UBERON_0008896.md index 0d0cb08cc6..7b07bec4ba 100644 --- a/md/UBERON/96/UBERON_0008896.md +++ b/md/UBERON/96/UBERON_0008896.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008896 * *Label* = post-hyoid pharyngeal arch - * *Definition* = A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * branchial arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * branchial arches [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * branchial bar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * branchial bars [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * gill arch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * gill arches 1-5 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * pharyngeal arch 3-7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * visceral arches 3-7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001613] - * gill bar [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * branchial arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * branchial arches [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * branchial bar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * branchial bars [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * gill arch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * gill arches 1-5 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * pharyngeal arch 3-7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * visceral arches 3-7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001613 ] + * gill bar [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [pharyngeal arch](../../UBERON/39/UBERON_0002539.md) and [posterior_to](../../BSPO/99/BSPO_0000099.md) some [pharyngeal arch 2](../../UBERON/66/UBERON_0003066.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Posterior-most stream of cranial neural crest, which sub-divides during migration.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0009096.md b/md/UBERON/96/UBERON_0009096.md index a85dec5689..21fb9fc3d6 100644 --- a/md/UBERON/96/UBERON_0009096.md +++ b/md/UBERON/96/UBERON_0009096.md @@ -26,9 +26,10 @@ ## Other Annotations * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0009097 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009096 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_0009196.md b/md/UBERON/96/UBERON_0009196.md index 773137f071..ff8d301749 100644 --- a/md/UBERON/96/UBERON_0009196.md +++ b/md/UBERON/96/UBERON_0009196.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0009496.md b/md/UBERON/96/UBERON_0009496.md index 623f13967f..afbfc97bba 100644 --- a/md/UBERON/96/UBERON_0009496.md +++ b/md/UBERON/96/UBERON_0009496.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0009596.md b/md/UBERON/96/UBERON_0009596.md index be77cd323b..cd9ae98353 100644 --- a/md/UBERON/96/UBERON_0009596.md +++ b/md/UBERON/96/UBERON_0009596.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009596 * *Label* = mesenchyme of interdigital region between digits 1 and 2 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 1 and 2. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 1 and 2. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between digits 1 and 2](../../UBERON/16/UBERON_0006016.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0009896.md b/md/UBERON/96/UBERON_0009896.md index b6ba9e44a1..8bbb961002 100644 --- a/md/UBERON/96/UBERON_0009896.md +++ b/md/UBERON/96/UBERON_0009896.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010096.md b/md/UBERON/96/UBERON_0010096.md index 5dd769ea45..adcd45eab5 100644 --- a/md/UBERON/96/UBERON_0010096.md +++ b/md/UBERON/96/UBERON_0010096.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010096 * *Label* = future myelencephalon - * *Definition* = A developing anatomical structure that has_potential_to_develop_into a myelencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A developing anatomical structure that has_potential_to_develop_into a myelencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [developing anatomical structure](../../UBERON/23/UBERON_0005423.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [myelencephalon](../../UBERON/90/UBERON_0005290.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010296.md b/md/UBERON/96/UBERON_0010296.md index 86176a7fed..d3afe6712d 100644 --- a/md/UBERON/96/UBERON_0010296.md +++ b/md/UBERON/96/UBERON_0010296.md @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010396.md b/md/UBERON/96/UBERON_0010396.md index 5db36b8707..496f750c06 100644 --- a/md/UBERON/96/UBERON_0010396.md +++ b/md/UBERON/96/UBERON_0010396.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010396 * *Label* = afferent lymphatic vessel - * *Definition* = Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * vasa afferentia lymphoglandula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Afferent_lymphatic_vessels] - * vasa afferentia lymphoglandulae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Afferent_lymphatic_vessels] + * vasa afferentia lymphoglandula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Afferent_lymphatic_vessels ] + * vasa afferentia lymphoglandulae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Afferent_lymphatic_vessels ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010496.md b/md/UBERON/96/UBERON_0010496.md index efe382c988..ff5e675ea8 100644 --- a/md/UBERON/96/UBERON_0010496.md +++ b/md/UBERON/96/UBERON_0010496.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010496 * *Label* = teres minor muscle - * *Definition* = a narrow, elongated muscle of the rotator cuff [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Teres_minor_muscle] + * *Definition* = a narrow, elongated muscle of the rotator cuff [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Teres_minor_muscle ] * *Comment* = Dorsal group[Kardong] ## Synonyms - * teres minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32550] - * musculus teres minor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Teres_minor_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * teres minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32550 ] + * musculus teres minor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Teres_minor_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:32550 * SCTID:277445001 - * UMLS:C0224231 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Teres_Minor_Muscle] + * UMLS:C0224231 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Teres_Minor_Muscle ] * Wikipedia:Teres_minor_muscle * http://upload.wikimedia.org/wikipedia/commons/c/c4/Gray810.png * ncithesaurus:Teres_Minor_Muscle @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010696.md b/md/UBERON/96/UBERON_0010696.md index 82e831859d..4fd61068b4 100644 --- a/md/UBERON/96/UBERON_0010696.md +++ b/md/UBERON/96/UBERON_0010696.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010696 * *Label* = skeleton of pedal acropodium - * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the pedal autopodium - i.e. the bones of the foot or their cartilaginous precursors[cjm]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The subdivision of the skeleton that consists of all the skeletal elements at the distalmost end of the pedal autopodium - i.e. the bones of the foot or their cartilaginous precursors[cjm]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms * all phalanges in hindlimb autopod * foot digit skeleton * hind acropodium skeleton - * pedal phalanges [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005030[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] - * phalanges of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78512] + * pedal phalanges [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005030, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] + * phalanges of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78512 ] * phalanges of pes * posterior acropodium skeleton * set of pedal phalanges - * set of phalanges of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:78512] + * set of phalanges of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:78512 ] * set of phalanges of pes - * posterior acropodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005030[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:NI] + * posterior acropodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005030, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:NI ] ## Cross-references @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [acropodial skeleton](../../UBERON/43/UBERON_0010543.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010896.md b/md/UBERON/96/UBERON_0010896.md index 71469804f5..5af6703689 100644 --- a/md/UBERON/96/UBERON_0010896.md +++ b/md/UBERON/96/UBERON_0010896.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0010996.md b/md/UBERON/96/UBERON_0010996.md index 15a3fe6f06..d311ef388f 100644 --- a/md/UBERON/96/UBERON_0010996.md +++ b/md/UBERON/96/UBERON_0010996.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010996 * *Label* = articular cartilage of joint - * *Definition* = A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001572] + * *Definition* = A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001572 ] ## Synonyms - * articular cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000487] - * cartilago articularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12264] - * hyaline cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001572] - * joint-associated cartilage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000179] + * articular cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000487 ] + * cartilago articularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12264 ] + * hyaline cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001572 ] + * joint-associated cartilage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000179 ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0000487 * MESH:A02.165.165 * SCTID:305026006 - * UMLS:C0007303 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Articular_Cartilage] + * UMLS:C0007303 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Articular_Cartilage ] * galen:ArticularCartilage * ncithesaurus:Articular_Cartilage @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011096.md b/md/UBERON/96/UBERON_0011096.md index 1761e4891b..36827e3e33 100644 --- a/md/UBERON/96/UBERON_0011096.md +++ b/md/UBERON/96/UBERON_0011096.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011096 * *Label* = lacrimal nerve - * *Definition* = The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lacrimal_nerve] + * *Definition* = The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lacrimal_nerve ] ## Synonyms @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011196.md b/md/UBERON/96/UBERON_0011196.md index 35851e73f7..3c0826c6ac 100644 --- a/md/UBERON/96/UBERON_0011196.md +++ b/md/UBERON/96/UBERON_0011196.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011196 * *Label* = superior parathyroid epithelium - * *Definition* = An epithelium that is part of a superior parathyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a superior parathyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior parathyroid gland](../../UBERON/49/UBERON_0006749.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011596.md b/md/UBERON/96/UBERON_0011596.md index 6356eb7664..a21f103e53 100644 --- a/md/UBERON/96/UBERON_0011596.md +++ b/md/UBERON/96/UBERON_0011596.md @@ -6,7 +6,7 @@ ## Synonyms - * lower jaw future lip [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001020] + * lower jaw future lip [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001020 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011696.md b/md/UBERON/96/UBERON_0011696.md index 201c69f118..edf59f2d66 100644 --- a/md/UBERON/96/UBERON_0011696.md +++ b/md/UBERON/96/UBERON_0011696.md @@ -6,7 +6,7 @@ ## Synonyms - * extraembryonic umbilical artery left [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000937] + * extraembryonic umbilical artery left [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000937 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011796.md b/md/UBERON/96/UBERON_0011796.md index 2ca08cbfd7..2f4e751462 100644 --- a/md/UBERON/96/UBERON_0011796.md +++ b/md/UBERON/96/UBERON_0011796.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011796 * *Label* = primary remex feather - * *Definition* = A remex feather that is connected to the manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather#Primaries] + * *Definition* = A remex feather that is connected to the manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather#Primaries ] * *Comment* = these are the longest and narrowest of the remiges (particularly those attached to the phalanges), and they can be individually rotated. These feathers are especially important for flapping flight, as they are the principal source of thrust, moving the bird forward through the air. Most thrust is generated on the downstroke of flapping flight. However, on the upstroke (when the bird often draws its wing in close to its body), the primaries are separated and rotated, reducing air resistance while still helping to provide some thrust ## Synonyms * primary flight feather * primary remex - * primary remiges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * primary remiges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [remex feather](../../UBERON/95/UBERON_0011795.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011896.md b/md/UBERON/96/UBERON_0011896.md index 992bdd7c68..a0eb130276 100644 --- a/md/UBERON/96/UBERON_0011896.md +++ b/md/UBERON/96/UBERON_0011896.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011896 * *Label* = smooth muscle endomysium - * *Definition* = Reticular tissue which surrounds a smooth muscle cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Reticular tissue which surrounds a smooth muscle cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endomysium](../../UBERON/95/UBERON_0011895.md) and [part_of](../../BFO/50/BFO_0000050.md) some [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0011996.md b/md/UBERON/96/UBERON_0011996.md index 99305aad93..fd542c7e10 100644 --- a/md/UBERON/96/UBERON_0011996.md +++ b/md/UBERON/96/UBERON_0011996.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011996 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0012196.md b/md/UBERON/96/UBERON_0012196.md index 37b2c2500d..40749e7653 100644 --- a/md/UBERON/96/UBERON_0012196.md +++ b/md/UBERON/96/UBERON_0012196.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0012296.md b/md/UBERON/96/UBERON_0012296.md index d7b1a6e0a1..dc7d92c04b 100644 --- a/md/UBERON/96/UBERON_0012296.md +++ b/md/UBERON/96/UBERON_0012296.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012296 * *Label* = urethral crest - * *Definition* = A longitudinal mucosal fold in the dorsal wall of the urethra[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011840[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Urethral_crest] + * *Definition* = A longitudinal mucosal fold in the dorsal wall of the urethra[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011840, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Urethral_crest ] * *Comment* = AO notes: in the FMA this is part of the prostatic urethra - but this leads to inconsistencies as 'urethral crest' in sex-neutral, with male and female subtypes ## Synonyms * crista of urethra - * crista urethralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * crista urethralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * urethral crista ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012296 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0013196.md b/md/UBERON/96/UBERON_0013196.md index a46e745bb7..22a4353bfb 100644 --- a/md/UBERON/96/UBERON_0013196.md +++ b/md/UBERON/96/UBERON_0013196.md @@ -7,7 +7,7 @@ ## Synonyms * animal wool - * wool [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A13.970] + * wool [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A13.970 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013196 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0013496.md b/md/UBERON/96/UBERON_0013496.md index e52d4c0f1e..ff35afaf34 100644 --- a/md/UBERON/96/UBERON_0013496.md +++ b/md/UBERON/96/UBERON_0013496.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013496 * *Label* = unbarbed keratin-coated spine - * *Definition* = A keratin-coated spine that is lacks a barbed end. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A keratin-coated spine that is lacks a barbed end. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9363 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013496 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0013596.md b/md/UBERON/96/UBERON_0013596.md index 47bdd59b66..447bf2920f 100644 --- a/md/UBERON/96/UBERON_0013596.md +++ b/md/UBERON/96/UBERON_0013596.md @@ -7,7 +7,7 @@ ## Synonyms * coronal sulcus of brain - * coronal sulcus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * coronal sulcus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0013696.md b/md/UBERON/96/UBERON_0013696.md index 326f619d1d..0aff0654ef 100644 --- a/md/UBERON/96/UBERON_0013696.md +++ b/md/UBERON/96/UBERON_0013696.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013696 * *Label* = tonsil epithelium - * *Definition* = The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2070] + * *Definition* = The epithelium that forms the surface of the tonsil dips into the underlying connective tissue in numerous places, forming crypts kown as tonsillar crypts. Stratified squamous epithelium, that may be heavily infiltrated by lymphocytes. Epithelial cells are present in the germinal as well as in the periphery of the nodule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2070 ] ## Synonyms - * epithelium of tonsil [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2070] - * tonsil epithelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2070] + * epithelium of tonsil [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2070 ] + * tonsil epithelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2070 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tonsil](../../UBERON/72/UBERON_0002372.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0014396.md b/md/UBERON/96/UBERON_0014396.md index aa2bd88442..ff8010c5c6 100644 --- a/md/UBERON/96/UBERON_0014396.md +++ b/md/UBERON/96/UBERON_0014396.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014396 * *Label* = interscapular fat pad - * *Definition* = Encapsulated adipose tissue located between the scapulae. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:rbabiuk[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MGI:smb] + * *Definition* = Encapsulated adipose tissue located between the scapulae. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:rbabiuk, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MGI:smb ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014396 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0014596.md b/md/UBERON/96/UBERON_0014596.md index 8a846599bd..d20a70777a 100644 --- a/md/UBERON/96/UBERON_0014596.md +++ b/md/UBERON/96/UBERON_0014596.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1348[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHdp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1348[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus dorsal parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHdp] - * paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHdp] - * paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHdp] + * paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1348, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHdp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1348, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus dorsal parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHdp ] + * paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHdp ] + * paraventricular nucleus of the hypothalamus, descending division, dorsal parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHdp ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014596 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0014696.md b/md/UBERON/96/UBERON_0014696.md index 96db82465b..8d96faae94 100644 --- a/md/UBERON/96/UBERON_0014696.md +++ b/md/UBERON/96/UBERON_0014696.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014696 * *Label* = anterior choroidal artery - * *Definition* = The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_choroidal_artery] + * *Definition* = The anterior choroidal artery originates from the internal carotid artery, though it also rarely arises from the middle cerebral artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_choroidal_artery ] ## Synonyms - * anterior choroidal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterior_choroidal_artery] + * anterior choroidal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterior_choroidal_artery ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014696 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0014796.md b/md/UBERON/96/UBERON_0014796.md index 5cc086e0dc..c4b8825182 100644 --- a/md/UBERON/96/UBERON_0014796.md +++ b/md/UBERON/96/UBERON_0014796.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014796 * *Label* = common tendinous ring - * *Definition* = Organ component cluster which consists of the fusion of the tendons of origin of the four rectus muscles of the eye. Examples: There are only two instances, right and left common tendinous rings. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49071] + * *Definition* = Organ component cluster which consists of the fusion of the tendons of origin of the four rectus muscles of the eye. Examples: There are only two instances, right and left common tendinous rings. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49071 ] ## Synonyms - * anulus of Zinn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49071] - * anulus tendineus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * common annular tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49071] - * common anular tendon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49071] - * annulus of Zinn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * annulus tendineus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * anulus tendineus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * anulus tendineus communis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * common tendinous ring [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * ligament of Zinn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] - * tendon of Zinn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Annulus_of_Zinn] + * anulus of Zinn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49071 ] + * anulus tendineus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * common annular tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49071 ] + * common anular tendon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49071 ] + * annulus of Zinn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * annulus tendineus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * anulus tendineus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * anulus tendineus communis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * common tendinous ring [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * ligament of Zinn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] + * tendon of Zinn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Annulus_of_Zinn ] ## Cross-references @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014796 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0014896.md b/md/UBERON/96/UBERON_0014896.md index b2de8ccd07..407d65bd55 100644 --- a/md/UBERON/96/UBERON_0014896.md +++ b/md/UBERON/96/UBERON_0014896.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014896 * *Label* = transversely striated somatic muscle - * *Definition* = A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:DOS] + * *Definition* = A somatic muscle that consists of one or more somatic muscle myotubes and any associated extracellular structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:DOS ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [CL_0008003](../../CL/03/CL_0008003.md) and [somatic muscle](../../UBERON/95/UBERON_0014895.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014896 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_0015096.md b/md/UBERON/96/UBERON_0015096.md index c183c88aef..21e5c9b69d 100644 --- a/md/UBERON/96/UBERON_0015096.md +++ b/md/UBERON/96/UBERON_0015096.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015096 + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2000096.md b/md/UBERON/96/UBERON_2000096.md index de347ec235..a26997dab5 100644 --- a/md/UBERON/96/UBERON_2000096.md +++ b/md/UBERON/96/UBERON_2000096.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2000196.md b/md/UBERON/96/UBERON_2000196.md index 9263b9689b..bd7986e1f3 100644 --- a/md/UBERON/96/UBERON_2000196.md +++ b/md/UBERON/96/UBERON_2000196.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000196 * *Label* = dorsal hypohyal bone - * *Definition* = Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * dorsal hypohyals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000196[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] - * dorsohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000196] - * upper hypohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000196] + * dorsal hypohyals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000196, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] + * dorsohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000196 ] + * upper hypohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000196 ] ## Cross-references @@ -38,7 +38,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2000296.md b/md/UBERON/96/UBERON_2000296.md index d5a8039365..aa2cfa7e48 100644 --- a/md/UBERON/96/UBERON_2000296.md +++ b/md/UBERON/96/UBERON_2000296.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2000596.md b/md/UBERON/96/UBERON_2000596.md index 08d8e0d257..4c9db66306 100644 --- a/md/UBERON/96/UBERON_2000596.md +++ b/md/UBERON/96/UBERON_2000596.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000596 * *Label* = pelvic fin actinotrichium - * *Definition* = Actinotrichium that is part of the pelvic fin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Actinotrichium that is part of the pelvic fin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -24,7 +24,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [actinotrichium](../../UBERON/89/UBERON_2000089.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic fin](../../UBERON/52/UBERON_0000152.md) ## Other Logical Axioms @@ -33,7 +33,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2000796.md b/md/UBERON/96/UBERON_2000796.md index b9c34d65d4..f7e574c50f 100644 --- a/md/UBERON/96/UBERON_2000796.md +++ b/md/UBERON/96/UBERON_2000796.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 25 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000796[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 25 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000796, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_2000896.md b/md/UBERON/96/UBERON_2000896.md index 0de7d7390b..2382dda30c 100644 --- a/md/UBERON/96/UBERON_2000896.md +++ b/md/UBERON/96/UBERON_2000896.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000896 * *Label* = hypaxial region somite 20 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001096.md b/md/UBERON/96/UBERON_2001096.md index 396b0d72d8..9abfc4336f 100644 --- a/md/UBERON/96/UBERON_2001096.md +++ b/md/UBERON/96/UBERON_2001096.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001396.md b/md/UBERON/96/UBERON_2001396.md index f53a061f8f..8a17a674a5 100644 --- a/md/UBERON/96/UBERON_2001396.md +++ b/md/UBERON/96/UBERON_2001396.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001396 * *Label* = parapophysis + rib of vertebra 4 - * *Definition* = The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * fourth pleural rib plus parapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001396] - * fourth rib plus parapophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001396] - * parapophysis/rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001396] + * fourth pleural rib plus parapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001396 ] + * fourth rib plus parapophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001396 ] + * parapophysis/rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001396 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001696.md b/md/UBERON/96/UBERON_2001696.md index f1785bf0df..ac89a1f17e 100644 --- a/md/UBERON/96/UBERON_2001696.md +++ b/md/UBERON/96/UBERON_2001696.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001696 * *Label* = gongyloid cartilage - * *Definition* = Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Recorded in Pristigasteridae and Engraulidae, of Clupeiformes, apparently also present in Chanos, of Gonorynchiformes (Di Dario, 2002). ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001796.md b/md/UBERON/96/UBERON_2001796.md index 9717f01364..a8794dfe06 100644 --- a/md/UBERON/96/UBERON_2001796.md +++ b/md/UBERON/96/UBERON_2001796.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001796 * *Label* = epibranchial 2 bone uncinate process - * *Definition* = Epibranchial uncinate process that is part of epibranchial 2 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Epibranchial uncinate process that is part of epibranchial 2 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001896.md b/md/UBERON/96/UBERON_2001896.md index 71c0733821..f82f23df17 100644 --- a/md/UBERON/96/UBERON_2001896.md +++ b/md/UBERON/96/UBERON_2001896.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001896 * *Label* = hypobranchial 3 element - * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 3 element laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2001996.md b/md/UBERON/96/UBERON_2001996.md index 8b045a3394..db8dc57a47 100644 --- a/md/UBERON/96/UBERON_2001996.md +++ b/md/UBERON/96/UBERON_2001996.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2002096.md b/md/UBERON/96/UBERON_2002096.md index 64deb3d399..2d5453a4d3 100644 --- a/md/UBERON/96/UBERON_2002096.md +++ b/md/UBERON/96/UBERON_2002096.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002096 * *Label* = bony plate series - * *Definition* = Anatomical cluster that consists of more than one bony plate in an individual. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of more than one bony plate in an individual. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * armor plate series [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002096] + * armor plate series [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002096 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_2005196.md b/md/UBERON/96/UBERON_2005196.md index 0b8b57f4eb..bc494ef441 100644 --- a/md/UBERON/96/UBERON_2005196.md +++ b/md/UBERON/96/UBERON_2005196.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 3 contralateral mlf interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005196] + * middle dorsal 3 contralateral mlf interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005196 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_3000396.md b/md/UBERON/96/UBERON_3000396.md index 6e5a711280..6d37d7dd67 100644 --- a/md/UBERON/96/UBERON_3000396.md +++ b/md/UBERON/96/UBERON_3000396.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000396 * *Label* = pars dentalis of maxilla - * *Definition* = Tooth-bearing part of the maxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Tooth-bearing part of the maxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms - * crista dentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000396] + * crista dentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000396 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3000696.md b/md/UBERON/96/UBERON_3000696.md index 95ec863234..6fcf7ffccd 100644 --- a/md/UBERON/96/UBERON_3000696.md +++ b/md/UBERON/96/UBERON_3000696.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000696 * *Label* = posterior intervertebral notch - * *Definition* = Indentation on the anterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Indentation on the anterior margin of the pedicel. When two vertebrae articulate, the anterior notch of one vertebra and the posterior notch of the other create a bilateral intervertebral space. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3000796.md b/md/UBERON/96/UBERON_3000796.md index f91f59138a..8ec196f96f 100644 --- a/md/UBERON/96/UBERON_3000796.md +++ b/md/UBERON/96/UBERON_3000796.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000796 * *Label* = imbricate neural arch - * *Definition* = Overlapping neural arches that obscure the spinal cord dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Overlapping neural arches that obscure the spinal cord dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3000896.md b/md/UBERON/96/UBERON_3000896.md index 284e3b3c0a..be1687d14c 100644 --- a/md/UBERON/96/UBERON_3000896.md +++ b/md/UBERON/96/UBERON_3000896.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000896 * *Label* = foveal depression - * *Definition* = Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3010096.md b/md/UBERON/96/UBERON_3010096.md index f83f57c167..507a3a897e 100644 --- a/md/UBERON/96/UBERON_3010096.md +++ b/md/UBERON/96/UBERON_3010096.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3010296.md b/md/UBERON/96/UBERON_3010296.md index b3d405bfd3..16a893c677 100644 --- a/md/UBERON/96/UBERON_3010296.md +++ b/md/UBERON/96/UBERON_3010296.md @@ -26,8 +26,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000023 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_3010496.md b/md/UBERON/96/UBERON_3010496.md index 5012265df1..bb0d654294 100644 --- a/md/UBERON/96/UBERON_3010496.md +++ b/md/UBERON/96/UBERON_3010496.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010496 * *Label* = mandibular artery - * *Definition* = Part of lateral pretrosal artery which supplies blood to the roof of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Part of lateral pretrosal artery which supplies blood to the roof of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_3010796.md b/md/UBERON/96/UBERON_3010796.md index 74e0229397..f5368a3aa7 100644 --- a/md/UBERON/96/UBERON_3010796.md +++ b/md/UBERON/96/UBERON_3010796.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010796 * *Label* = ramus supraotic - * *Definition* = Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Small ramus of the MLLN that innervates neuromasts located at the posterior margin of the otic capsule. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/96/UBERON_4000096.md b/md/UBERON/96/UBERON_4000096.md index 67705e3053..737dee0511 100644 --- a/md/UBERON/96/UBERON_4000096.md +++ b/md/UBERON/96/UBERON_4000096.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000096 * *Label* = obsolete terminally differentiated odontoblast - * *Definition* = Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] + * *Definition* = Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] ## Synonyms @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:00007013 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/96/UBERON_4200096.md b/md/UBERON/96/UBERON_4200096.md index dc635d7983..852c78ba8e 100644 --- a/md/UBERON/96/UBERON_4200096.md +++ b/md/UBERON/96/UBERON_4200096.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0000397.md b/md/UBERON/97/UBERON_0000397.md index b9a7ef3693..0cfe16d62d 100644 --- a/md/UBERON/97/UBERON_0000397.md +++ b/md/UBERON/97/UBERON_0000397.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000397 * *Label* = colonic epithelium - * *Definition* = An epithelium that is part of a colon [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a colon [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * Colon epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17302] - * colon epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * colon epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelial tissue of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of colon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * epithelium of large bowel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel epithelial tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * large bowel epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * posterior intestine epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005128] + * Colon epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17302 ] + * colon epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * colon epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelial tissue of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of colon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * epithelium of large bowel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel epithelial tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * large bowel epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * posterior intestine epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005128 ] ## Cross-references @@ -38,7 +38,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [colon](../../UBERON/55/UBERON_0001155.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Intestinal epithelium which lines the lumen of the posterior intestine.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0000997.md b/md/UBERON/97/UBERON_0000997.md index 334b89df22..5519542ab5 100644 --- a/md/UBERON/97/UBERON_0000997.md +++ b/md/UBERON/97/UBERON_0000997.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000997 * *Label* = mammalian vulva - * *Definition* = external genital organs of the female mammal[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vulva] + * *Definition* = external genital organs of the female mammal[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vulva ] * *Comment* = editor note: todo - add pudendum ## Synonyms - * female pudendum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003101] - * female pudendum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20462] + * female pudendum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003101 ] + * female pudendum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20462 ] * mammalian vulva - * puboperineal region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20462] - * pudendum femininum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:20462[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * puboperineal region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20462 ] + * pudendum femininum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:20462, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * skin of female pudendum * skin of vulva - * vulva [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000395] - * pudendum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003101] - * pudendum femininum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vulva[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pudendum muliebre [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003101] + * vulva [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000395 ] + * pudendum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003101 ] + * pudendum femininum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vulva, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pudendum muliebre [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003101 ] ## Cross-references @@ -34,7 +34,7 @@ * MIAA:0000169 * OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA * SCTID:265796001 - * UMLS:C0042993 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vulva] + * UMLS:C0042993 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vulva ] * VHOG:0001458 * Wikipedia:Vulva * galen:Vulva @@ -65,8 +65,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The external genital organs of the female, including the labia majora, labia minora, clitoris, and vestibule of the vagina. [TFD][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = vulval * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001097.md b/md/UBERON/97/UBERON_0001097.md index 39bb5d2934..cb02b7dd13 100644 --- a/md/UBERON/97/UBERON_0001097.md +++ b/md/UBERON/97/UBERON_0001097.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001097 * *Label* = axillary lymph node - * *Definition* = The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_lymph_node[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_lymph_nodes] + * *Definition* = The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_lymph_node, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_lymph_nodes ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * axillary node - * nodi lymphoidei axillares [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Axillary_lymph_nodes[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nodi lymphoidei axillares [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Axillary_lymph_nodes, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:12771 * MA:0000735 * SCTID:181759007 - * UMLS:C0729594 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Axillary_Lymph_Node] + * UMLS:C0729594 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Axillary_Lymph_Node ] * Wikipedia:Axillary_lymph_nodes * http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png * http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001197.md b/md/UBERON/97/UBERON_0001197.md index 3dac1d8266..6bbb5def51 100644 --- a/md/UBERON/97/UBERON_0001197.md +++ b/md/UBERON/97/UBERON_0001197.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001197 * *Label* = ileocolic artery - * *Definition* = The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocolic_artery] + * *Definition* = The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocolic_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria ileocolica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ileocolic_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria ileocolica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ileocolic_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14815 * MA:0001970 * SCTID:244279000 - * UMLS:C0226323 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ileo-colic_Artery] + * UMLS:C0226323 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ileo-colic_Artery ] * Wikipedia:Ileocolic_artery * galen:IleocolicArtery * http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001297.md b/md/UBERON/97/UBERON_0001297.md index 6aea0c3159..0e15171cb6 100644 --- a/md/UBERON/97/UBERON_0001297.md +++ b/md/UBERON/97/UBERON_0001297.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001297 * *Label* = serosa of uterus - * *Definition* = Outer serosa layer of the uterus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Perimetrium] + * *Definition* = Outer serosa layer of the uterus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Perimetrium ] * *Comment* = TODO - check for parallel structure with peritoneum ## Synonyms - * perimetrium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Perimetrium] + * perimetrium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Perimetrium ] * serous coat of uterus - * serous membrane of uterus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * serous membrane of uterus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica serosa (perimetrium) - * tunica serosa uteri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:17744[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica serosa uteri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:17744, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * uterine serosa * uterus serosa - * uterus serous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * uterus serous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * visceral peritoneum of uterus ## Cross-references @@ -23,7 +23,7 @@ * FMA:17744 * MA:0001729 * SCTID:253705006 - * UMLS:C0227824 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Perimetrium] + * UMLS:C0227824 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Perimetrium ] * Wikipedia:Perimetrium * http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg @@ -42,15 +42,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [uterus](../../UBERON/95/UBERON_0000995.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001397.md b/md/UBERON/97/UBERON_0001397.md index 8942534cf5..4431f07715 100644 --- a/md/UBERON/97/UBERON_0001397.md +++ b/md/UBERON/97/UBERON_0001397.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001397 * *Label* = subscapular artery - * *Definition* = The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subscapular_artery] + * *Definition* = The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subscapular_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria subscapularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subscapular_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria subscapularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subscapular_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:22677 * MA:0002050 * SCTID:244311006 - * UMLS:C0226422 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subscapular_Artery] + * UMLS:C0226422 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subscapular_Artery ] * Wikipedia:Subscapular_artery * http://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001497.md b/md/UBERON/97/UBERON_0001497.md index f390cf8617..a940de8e9b 100644 --- a/md/UBERON/97/UBERON_0001497.md +++ b/md/UBERON/97/UBERON_0001497.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001497 * *Label* = muscle of pelvic girdle - * *Definition* = A muscle organ that is part of a pelvic girdle [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a pelvic girdle [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = AO notes: Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle. ## Synonyms - * girdle-pelvic muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of girdle-pelvic [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of pelvic girdle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of pelvic girdle bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvic girdle bone muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * girdle-pelvic muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of girdle-pelvic [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of pelvic girdle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of pelvic girdle bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvic girdle bone muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * pelvic girdle muscle - * pelvic girdle muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pelvic girdle skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18185] + * pelvic girdle muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pelvic girdle skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18185 ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003271 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001597.md b/md/UBERON/97/UBERON_0001597.md index 8dc92ea3b9..2131d2367c 100644 --- a/md/UBERON/97/UBERON_0001597.md +++ b/md/UBERON/97/UBERON_0001597.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001597 * *Label* = masseter muscle - * *Definition* = jaw muscle of therapsids which permits the longitudinal, grinding, motions of the jaw. The masseter is derived from the m. adductor mandibulae externus, which originates in the adductor chamber (in the temporal fenestra) and inserts on the coronoid process and internal surface of the lower jaw.[Palaeos]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseter_muscle[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryM.html] + * *Definition* = jaw muscle of therapsids which permits the longitudinal, grinding, motions of the jaw. The masseter is derived from the m. adductor mandibulae externus, which originates in the adductor chamber (in the temporal fenestra) and inserts on the coronoid process and internal surface of the lower jaw.[Palaeos]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseter_muscle, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryM.html ] * *Comment* = The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati)[VHOG] ## Synonyms - * masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001755] - * musculus masseter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Masseter_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001755 ] + * musculus masseter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Masseter_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002343 * MESH:A02.633.567.600.500 * SCTID:181738000 - * UMLS:C0024876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Masseter_Muscle] + * UMLS:C0024876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Masseter_Muscle ] * VHOG:0000823 * Wikipedia:Masseter_muscle * http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches, and attaches to mandible and zygomatic arch.[FEED] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001697.md b/md/UBERON/97/UBERON_0001697.md index aae8150d81..ddc877a38a 100644 --- a/md/UBERON/97/UBERON_0001697.md +++ b/md/UBERON/97/UBERON_0001697.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001697 * *Label* = orbital region - * *Definition* = Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001410[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Orbit_(anatomy)] + * *Definition* = Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001410, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Orbit_(anatomy) ] * *Comment* = AO notes: in FMA, this overlaps with bones such as the maxilla and sphenoid; in ZFA, individual bones are part of the orbit ## Synonyms * bony orbit * eye socket - * orbit of skull [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53074] - * orbit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001410] + * orbit of skull [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53074 ] + * orbit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001410 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.232.781.324.690 * OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA * TAO:0001410 - * UMLS:C0029180 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Orbit] + * UMLS:C0029180 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Orbit ] * Wikipedia:Orbit_(anatomy) * XAO:0003171 * ZFA:0001410 @@ -51,8 +51,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001797.md b/md/UBERON/97/UBERON_0001797.md index 638b4e4511..1d995d6ba7 100644 --- a/md/UBERON/97/UBERON_0001797.md +++ b/md/UBERON/97/UBERON_0001797.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001797 * *Label* = vitreous humor - * *Definition* = Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitreous_humour] + * *Definition* = Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitreous_humour ] * *Comment* = Note that FMA distinguishes between a portion and the whole portion. We equate with whole portion here, but this is arbitrary ## Synonyms * humor vitreous - * humor vitreus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58822[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vitreous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0005561] - * whole portion of vitreous humor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58822] - * portion of vitreous humor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:67388] - * humoral fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001451] - * ocular fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001451] - * vitreous fluid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001451] + * humor vitreus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58822, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vitreous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0005561 ] + * whole portion of vitreous humor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58822 ] + * portion of vitreous humor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:67388 ] + * humoral fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001451 ] + * ocular fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001451 ] + * vitreous fluid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001451 ] * vitreous humour ## Cross-references @@ -28,7 +28,7 @@ * FMA:58822 * MA:0001286 * OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA - * UMLS:C0229096 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vitreous_Humor] + * UMLS:C0229096 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vitreous_Humor ] * VHOG:0000795 * Wikipedia:Vitreous_humour * ZFA:0005561 @@ -56,8 +56,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001797 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001897.md b/md/UBERON/97/UBERON_0001897.md index ec829f9ddc..fdb17b0422 100644 --- a/md/UBERON/97/UBERON_0001897.md +++ b/md/UBERON/97/UBERON_0001897.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001897 * *Label* = dorsal plus ventral thalamus - * *Definition* = A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Thalamus] + * *Definition* = A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Thalamus ] ## Synonyms - * wider thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMC:PMC3345571] - * Th [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_954[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:23375746[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62007[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000179] - * thalamencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:300[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * thalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000657[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * thalamus opticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:300[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * wider thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMC:PMC3345571 ] + * Th [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_954, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:23375746, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62007, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000179 ] + * thalamencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:300, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * thalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000657, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * thalamus opticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:300, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -31,12 +31,12 @@ * MESH:A08.186.211.730.385.826 * MIAA:0000109 * NIF_GrossAnatomy:birnlex_954 - * NeuroNames:300 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_954] + * NeuroNames:300 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_954 ] * OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA * SCTID:244433007 * TAO:0001215 - * UMLS:C0039729 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_954] - * UMLS:C0039729 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Thalamus] + * UMLS:C0039729 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_954 ] + * UMLS:C0039729 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Thalamus ] * VHOG:0000657 * Wikipedia:Thalamus * ZFA:0001215 @@ -70,8 +70,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) the brain regions of tetrapods, the structures they contain, and their basic organizational features are the same as in fishes.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = thalamic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0001997.md b/md/UBERON/97/UBERON_0001997.md index dcb85e6cb9..d4bc603085 100644 --- a/md/UBERON/97/UBERON_0001997.md +++ b/md/UBERON/97/UBERON_0001997.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001997 * *Label* = olfactory epithelium - * *Definition* = Epithelium inside the nasal cavity that is responsible for detecting odors[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Olfactory_epithelium] + * *Definition* = Epithelium inside the nasal cavity that is responsible for detecting odors[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Olfactory_epithelium ] * *Comment* = Genes: V1Rs, Trpc2 present in lamprey // See also: FMA:77199 ## Synonyms - * nasal cavity olfactory epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0001325] - * olfactory membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_2703] + * nasal cavity olfactory epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0001325 ] + * olfactory membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_2703 ] * olfactory sensory epithelium * sensory olfactory epithelium * nasal epithelium * nasal sensory epithelium - * olfactory mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:303] + * olfactory mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:303 ] ## Cross-references @@ -29,11 +29,11 @@ * MA:0001325 * MAT:0000445 * NIF_GrossAnatomy:birnlex_2703 - * NeuroNames:1900 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2703] + * NeuroNames:1900 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2703 ] * SCTID:37623003 * TAO:0000554 - * UMLS:C0599332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_2703] - * UMLS:C0599332 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Olfactory_Epithelium] + * UMLS:C0599332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_2703 ] + * UMLS:C0599332 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Olfactory_Epithelium ] * VHOG:0000985 * Wikipedia:Olfactory_epithelium * ZFA:0000554 @@ -74,8 +74,9 @@ * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of principal cavity (AAO:0000992)[AAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0004853 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002097.md b/md/UBERON/97/UBERON_0002097.md index c7c06ef8f9..99fd4fa461 100644 --- a/md/UBERON/97/UBERON_0002097.md +++ b/md/UBERON/97/UBERON_0002097.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002097 * *Label* = skin of body - * *Definition* = Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7163[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OMD:skin[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Skin] + * *Definition* = Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7163, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OMD:skin, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Skin ] * *Comment* = Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin ## Synonyms @@ -24,7 +24,7 @@ * MESH:A17.815 * OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA * SCTID:181469002 - * UMLS:C1123023 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Skin] + * UMLS:C1123023 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Skin ] * Wikipedia:Skin * XAO:0000023 * galen:Skin @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002197.md b/md/UBERON/97/UBERON_0002197.md index 4005562b38..a67167a43f 100644 --- a/md/UBERON/97/UBERON_0002197.md +++ b/md/UBERON/97/UBERON_0002197.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002197 * *Label* = median eminence of neurohypophysis - * *Definition* = The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_eminence] + * *Definition* = The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_eminence ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * eminentia mediana hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74634[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * eminentia mediana hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74634, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * median eminence * median eminence of hypothalamus * median eminence of posterior lobe of pituitary gland * median eminence of tuber cinereum - * ME [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_925[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * eminentia medialis (Shantha) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia mediana [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia mediana hypothalami [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Median_eminence[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * eminentia postinfundibularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * medial eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:402] + * ME [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_925, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * eminentia medialis (Shantha) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia mediana [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia mediana hypothalami [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Median_eminence, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * eminentia postinfundibularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * medial eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:402 ] ## Cross-references @@ -34,9 +34,9 @@ * MA:0000859 * MESH:A06.407.747.734.500 * NIF_GrossAnatomy:birnlex_925 - * NeuroNames:402 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_925] + * NeuroNames:402 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_925 ] * SCTID:369121004 - * UMLS:C0025056 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_925] + * UMLS:C0025056 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_925 ] * VHOG:0001179 * Wikipedia:Median_eminence * http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG @@ -66,8 +66,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Region of the neurohypophysis.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002297.md b/md/UBERON/97/UBERON_0002297.md index ac946ba4bc..f6c12a4759 100644 --- a/md/UBERON/97/UBERON_0002297.md +++ b/md/UBERON/97/UBERON_0002297.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002297 * *Label* = cerumen - * *Definition* = The yellow or brown waxy secretions produced by vestigial apocrine sweat glands in the external ear canal[MESH]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A12.200.147] + * *Definition* = The yellow or brown waxy secretions produced by vestigial apocrine sweat glands in the external ear canal[MESH]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A12.200.147 ] ## Synonyms @@ -17,7 +17,7 @@ * GAID:1158 * MA:0002506 * MESH:A12.200.147 - * UMLS:C0740486 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cerumen] + * UMLS:C0740486 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cerumen ] * Wikipedia:Earwax * ncithesaurus:Cerumen @@ -40,8 +40,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cerumenal * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = cerumenous - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002397.md b/md/UBERON/97/UBERON_0002397.md index 4d9262e185..26992d16bf 100644 --- a/md/UBERON/97/UBERON_0002397.md +++ b/md/UBERON/97/UBERON_0002397.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002397 * *Label* = maxilla - * *Definition* = The bone which normally forms the lateral upper jaw in osteichthyans, including tetrapods. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxilla[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryM.html] + * *Definition* = The bone which normally forms the lateral upper jaw in osteichthyans, including tetrapods. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxilla, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryM.html ] * *Comment* = Fusion of maxilla + premaxilla ## Synonyms * upper jaw bone - * maxillae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * maxillary bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Maxilla] + * maxillae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * maxillary bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Maxilla ] ## Cross-references @@ -26,7 +26,7 @@ * MESH:A02.835.232.781.324.502.645 * SCTID:181813003 * TAO:0000270 - * UMLS:C0024947 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Maxilla] + * UMLS:C0024947 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Maxilla ] * VHOG:0001021 * VSAO:0000207 * Wikipedia:Maxilla @@ -68,8 +68,9 @@ * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = In some teleosts, the maxilla is located postero-ventral to the supramaxilla. Commonly, the articular process of the maxilla articulates with the autopalatine and ethmoidal region antero-medially. The maxilla is usually the largest bone in the upper jaw assemblage.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = maxillary * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002497.md b/md/UBERON/97/UBERON_0002497.md index 050100133a..cbe9367180 100644 --- a/md/UBERON/97/UBERON_0002497.md +++ b/md/UBERON/97/UBERON_0002497.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002497 * *Label* = acromion - * *Definition* = Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005067] + * *Definition* = Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005067 ] ## Synonyms - * acromion process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005067] - * scapular acromion [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0005067] - * acromion of scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromion] - * acromion of the scapula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Acromion] + * acromion process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005067 ] + * scapular acromion [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0005067 ] + * acromion of scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromion ] + * acromion of the scapula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Acromion ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A02.835.232.087.783.261 * OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA * SCTID:181911000 - * UMLS:C0001209 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Acromion] + * UMLS:C0001209 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Acromion ] * VSAO:0005067 * Wikipedia:Acromion * http://upload.wikimedia.org/wikipedia/commons/7/79/Gray206.png @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Anterior rounded projection of the pars acromialis of the scapula.[AAO] * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = relationship loss: part_of pars acromialis (AAO:0000752)[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002597.md b/md/UBERON/97/UBERON_0002597.md index 0b19fca2e8..7e28134105 100644 --- a/md/UBERON/97/UBERON_0002597.md +++ b/md/UBERON/97/UBERON_0002597.md @@ -3,36 +3,36 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002597 * *Label* = principal sensory nucleus of trigeminal nerve - * *Definition* = The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021730[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chief_sensory_nucleus] + * *Definition* = The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021730, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chief_sensory_nucleus ] * *Comment* = GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151 ## Synonyms - * chief sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * main sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] + * chief sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * main sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] * main sensory nucleus of cranial nerve v * principal sensory nucleus - * principal sensory nucleus of trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * principal sensory trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * principal trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * superior trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * superior trigeminal sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * trigeminal V chief sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002740] - * trigeminal V principal sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002740] - * trigeminal nerve superior sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54533] - * chief sensory trigeminal nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] - * chief trigeminal sensory nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] - * nucleus pontinus nervi trigeminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus pontinus nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus principalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus sensibilis superior nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus sensorius principalis nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * nucleus sensorius superior nervi trigemini [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pontine nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0021740[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trigeminal_nuclei[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * pontine nucleus of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] - * primary nucleus of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] - * principal sensory nucleus of the trigeminal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] - * principal sensory nucleus of the trigeminal nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:560] + * principal sensory nucleus of trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * principal sensory trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * principal trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * superior trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * superior trigeminal sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * trigeminal V chief sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002740 ] + * trigeminal V principal sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002740 ] + * trigeminal nerve superior sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54533 ] + * chief sensory trigeminal nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] + * chief trigeminal sensory nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] + * nucleus pontinus nervi trigeminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus pontinus nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus principalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus sensibilis superior nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus sensorius principalis nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * nucleus sensorius superior nervi trigemini [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pontine nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0021740, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trigeminal_nuclei, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * pontine nucleus of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] + * primary nucleus of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] + * principal sensory nucleus of the trigeminal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] + * principal sensory nucleus of the trigeminal nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:560 ] ## Cross-references @@ -45,10 +45,10 @@ * FMA:54533 * MA:0002740 * NIF_GrossAnatomy:birnlex_1120 - * NeuroNames:560 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1120] + * NeuroNames:560 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1120 ] * SCTID:369031008 - * UMLS:C0228701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1120] - * UMLS:C0228701 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve] + * UMLS:C0228701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1120 ] + * UMLS:C0228701 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve ] * Wikipedia:Chief_sensory_nucleus * http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png * ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve @@ -74,8 +74,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002697.md b/md/UBERON/97/UBERON_0002697.md index 5cbbd923dd..17fb4b5d53 100644 --- a/md/UBERON/97/UBERON_0002697.md +++ b/md/UBERON/97/UBERON_0002697.md @@ -6,21 +6,21 @@ ## Synonyms - * Meynert's commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051] - * commissura supraoptica dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Meynert's commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051 ] + * commissura supraoptica dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * commissure of Meynert - * dorsal supra-optic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051] + * dorsal supra-optic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051 ] * dorsal supraoptic commissure (of ganser) - * dorsal supraoptic commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051] - * dorsal supraoptic decussation (of Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1433] - * dorsal supraoptic decussation (of ganser) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1433] + * dorsal supraoptic commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051 ] + * dorsal supraoptic decussation (of Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1433 ] + * dorsal supraoptic decussation (of ganser) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1433 ] * dorsal supraoptic decussation of Meynert - * ganser's commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051] + * ganser's commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051 ] * supraoptic commissure of Meynert - * supraoptic commissures, dorsal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62051] - * dsox [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1433[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * commissura supraoptica dorsalis pars ventralis (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:388[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * supraoptic commissures, dorsal (Meynert) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:388] + * supraoptic commissures, dorsal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62051 ] + * dsox [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1433, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * commissura supraoptica dorsalis pars ventralis (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:388, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * supraoptic commissures, dorsal (Meynert) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:388 ] ## Cross-references @@ -28,8 +28,8 @@ * BAMS:supd * FMA:62051 * NIF_GrossAnatomy:birnlex_1433 - * NeuroNames:388 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1433] - * UMLS:C0175338 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1433] + * NeuroNames:388 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1433 ] + * UMLS:C0175338 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1433 ] ## Subsets @@ -47,8 +47,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002797.md b/md/UBERON/97/UBERON_0002797.md index 5fbd6bbb85..3014a93d30 100644 --- a/md/UBERON/97/UBERON_0002797.md +++ b/md/UBERON/97/UBERON_0002797.md @@ -3,28 +3,28 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002797 * *Label* = dorsal trigeminal tract - * *Definition* = The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_trigeminal_tract] + * *Definition* = The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_trigeminal_tract ] * *Comment* = This tract arises from Principal trigeminal nucleus and terminates in the ipsilateral VPM nucleus of the thalamus.[WP] ## Synonyms - * dorsal ascending trigeminal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * dorsal division of trigeminal lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] + * dorsal ascending trigeminal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * dorsal division of trigeminal lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] * dorsal secondary ascending tract of v * dorsal secondary tract of v - * dorsal trigeminal lemniscus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * dorsal trigeminal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * dorsal trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * posterior trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * reticulothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * tractus trigeminothalamicus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * uncrossed dorsal trigeminothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72500] - * dorsal secondary ascending tract of V [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:606] - * dorsal trigemino-thalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tth] - * dorsal trigmino-thalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:606] - * tenia of thalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:tth] - * tractus trigeminalis dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus trigemino-thalamicus dorsalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:606[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dorsal trigeminal lemniscus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * dorsal trigeminal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * dorsal trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * posterior trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * reticulothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * tractus trigeminothalamicus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * uncrossed dorsal trigeminothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72500 ] + * dorsal secondary ascending tract of V [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:606 ] + * dorsal trigemino-thalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tth ] + * dorsal trigmino-thalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:606 ] + * tenia of thalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:tth ] + * tractus trigeminalis dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus trigemino-thalamicus dorsalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:606, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -32,8 +32,8 @@ * BAMS:tth * FMA:72500 * NIF_GrossAnatomy:birnlex_1718 - * NeuroNames:606 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1718] - * UMLS:C0175459 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1718] + * NeuroNames:606 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1718 ] + * UMLS:C0175459 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1718 ] * Wikipedia:Dorsal_trigeminal_tract ## Subsets @@ -55,8 +55,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002797 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002897.md b/md/UBERON/97/UBERON_0002897.md index f7c185cf9d..cd291740d9 100644 --- a/md/UBERON/97/UBERON_0002897.md +++ b/md/UBERON/97/UBERON_0002897.md @@ -6,21 +6,21 @@ ## Synonyms - * cisterna lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4002] - * lamina terminalis cistern [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74516] - * cislt [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4002[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * cistern of the lamina terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:29] - * cisterna laminae terminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cisterna lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4002 ] + * lamina terminalis cistern [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74516 ] + * cislt [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4002, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * cistern of the lamina terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:29 ] + * cisterna laminae terminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:cislt * FMA:74516 * NIF_GrossAnatomy:birnlex_4002 - * NeuroNames:29 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4002] + * NeuroNames:29 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4002 ] * SCTID:12692002 - * UMLS:C0228153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4002] - * UMLS:C0228153 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lamina_Terminalis_Cistern] + * UMLS:C0228153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4002 ] + * UMLS:C0228153 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lamina_Terminalis_Cistern ] * ncithesaurus:Lamina_Terminalis_Cistern ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0002997.md b/md/UBERON/97/UBERON_0002997.md index 1df555867a..1ed61f4172 100644 --- a/md/UBERON/97/UBERON_0002997.md +++ b/md/UBERON/97/UBERON_0002997.md @@ -6,8 +6,8 @@ ## Synonyms - * medial eminence nucleus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72467] - * nucleus of eminentia teres [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72467] + * medial eminence nucleus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72467 ] + * nucleus of eminentia teres [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72467 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003097.md b/md/UBERON/97/UBERON_0003097.md index 6854aabe93..c27445ef29 100644 --- a/md/UBERON/97/UBERON_0003097.md +++ b/md/UBERON/97/UBERON_0003097.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003097 * *Label* = dorsal fin - * *Definition* = Median fin located on the dorsal surface of the organism. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:curator[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000165] + * *Definition* = Median fin located on the dorsal surface of the organism. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:curator, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000165 ] ## Synonyms - * nageoire dorsale@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000165] - * notoptrygie@fr [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000165] + * nageoire dorsale@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000165 ] + * notoptrygie@fr [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000165 ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[axiom_lost_from_external_ontology](../../UBPROP/02/UBPROP_0000002.md)* = is_a median fin[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003197.md b/md/UBERON/97/UBERON_0003197.md index c6fc024f94..00bd30498c 100644 --- a/md/UBERON/97/UBERON_0003197.md +++ b/md/UBERON/97/UBERON_0003197.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004770 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000226 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003197 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_0003297.md b/md/UBERON/97/UBERON_0003297.md index 4496b8418a..4d65d76c8c 100644 --- a/md/UBERON/97/UBERON_0003297.md +++ b/md/UBERON/97/UBERON_0003297.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003297 * *Label* = gland of integumental system - * *Definition* = A gland that is part of a integumental system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A gland that is part of a integumental system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * integumental system gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * integumental system gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [integumental system](../../UBERON/16/UBERON_0002416.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003397.md b/md/UBERON/97/UBERON_0003397.md index e0033b276a..70c781756b 100644 --- a/md/UBERON/97/UBERON_0003397.md +++ b/md/UBERON/97/UBERON_0003397.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003397 * *Label* = mesentery of duodenum - * *Definition* = A mesentery that is part of a duodenum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a duodenum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * duodenum mesentery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * duodenum mesentery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [duodenum](../../UBERON/14/UBERON_0002114.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003497.md b/md/UBERON/97/UBERON_0003497.md index cbd2c05b32..4c68898a08 100644 --- a/md/UBERON/97/UBERON_0003497.md +++ b/md/UBERON/97/UBERON_0003497.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003497 * *Label* = abdomen blood vessel - * *Definition* = A blood vessel that is part of an abdomen [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of an abdomen [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -23,16 +23,17 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003497 * *[see also](../../so/rdf-schema#seeAlso.md)* = UBERON:0012254 +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_0003597.md b/md/UBERON/97/UBERON_0003597.md index c9d4289763..44033af323 100644 --- a/md/UBERON/97/UBERON_0003597.md +++ b/md/UBERON/97/UBERON_0003597.md @@ -3,48 +3,48 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003597 * *Label* = manual digit connective tissue - * *Definition* = A portion of connective tissue that is part of a finger [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a finger [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of hand connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of hand portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of hand textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digit of terminal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * digitus manus textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * finger textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * fore limb digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * hand digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000623] - * hand digit portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb digit textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digit of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digit of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of digitus manus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of finger [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hand digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of terminal segment of free upper limb digit [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand digit connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * connective tissue of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of hand connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of hand portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of hand textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digit of terminal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * digitus manus textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * finger textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * fore limb digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * hand digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000623 ] + * hand digit portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb digit textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digit of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digit of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of digitus manus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of finger [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hand digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of terminal segment of free upper limb digit [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand digit connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -60,15 +60,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manual digit](../../UBERON/89/UBERON_0002389.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003697.md b/md/UBERON/97/UBERON_0003697.md index 2af08c107e..d8460b58e2 100644 --- a/md/UBERON/97/UBERON_0003697.md +++ b/md/UBERON/97/UBERON_0003697.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003697 * *Label* = abdominal wall - * *Definition* = The abdominal wall represents the boundaries of the abdominal cavity. The abdominal wall is split into the posterior (back), lateral (sides) and anterior (front) walls. There is a common set of layers covering and forming all the walls: the deepest being the extraperitoneal fat, the parietal peritoneum, and a layer of fascia which has different names over where it covers (eg transversalis, psoas fascia). Superficial to these, but not present in the posterior wall are the three layers of muscle, the transversus abdominis (transverse abdominal muscle), the internal (obliquus internus) and the external oblique (obliquus externus). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_wall] + * *Definition* = The abdominal wall represents the boundaries of the abdominal cavity. The abdominal wall is split into the posterior (back), lateral (sides) and anterior (front) walls. There is a common set of layers covering and forming all the walls: the deepest being the extraperitoneal fat, the parietal peritoneum, and a layer of fascia which has different names over where it covers (eg transversalis, psoas fascia). Superficial to these, but not present in the posterior wall are the three layers of muscle, the transversus abdominis (transverse abdominal muscle), the internal (obliquus internus) and the external oblique (obliquus externus). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_wall ] ## Synonyms - * paries abdominalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_wall] - * wall of abdomen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:259054] - * wall of abdomen proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:10429] - * layers of the abdominal wall [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_wall] - * paries abdominalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Abdominal_wall[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * paries abdominalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_wall ] + * wall of abdomen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:259054 ] + * wall of abdomen proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:10429 ] + * layers of the abdominal wall [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_wall ] + * paries abdominalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Abdominal_wall, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,7 +20,7 @@ * GAID:26 * MESH:A01.047.050 * SCTID:181613000 - * UMLS:C0836916 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Abdominal_Wall] + * UMLS:C0836916 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Abdominal_Wall ] * Wikipedia:Abdominal_wall * http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg * ncithesaurus:Abdominal_Wall @@ -35,15 +35,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical wall](../../UBERON/60/UBERON_0000060.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003897.md b/md/UBERON/97/UBERON_0003897.md index c73341fcff..78338058b3 100644 --- a/md/UBERON/97/UBERON_0003897.md +++ b/md/UBERON/97/UBERON_0003897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003897 * *Label* = axial muscle - * *Definition* = One of the skeletal muscles of the head and neck, spine, and ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003327] + * *Definition* = One of the skeletal muscles of the head and neck, spine, and ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003327 ] ## Synonyms @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [attaches_to_part_of](../../core#attaches/of/core#attaches_to_part_of.md) some [axial skeleton plus cranial skeleton](../../UBERON/44/UBERON_0005944.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main body axis](../../UBERON/01/UBERON_0013701.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0003997.md b/md/UBERON/97/UBERON_0003997.md index 04a13da2fb..c86158906b 100644 --- a/md/UBERON/97/UBERON_0003997.md +++ b/md/UBERON/97/UBERON_0003997.md @@ -3,32 +3,32 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003997 * *Label* = hyoid bone greater horn - * *Definition* = the larger and more lateral of the paired processes on either side of the hyoid bone[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009913[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Greater_cornu] + * *Definition* = the larger and more lateral of the paired processes on either side of the hyoid bone[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009913, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Greater_cornu ] * *Comment* = In humans, the greater cornua are the larger, more lateral projections from the left and right borders of the body of hyoid bone. They are in contrast to the lesser cornua, which also occur in pairs but are comparatively smaller and conical in shape. The greater cornua are derived from the third pharyngeal arches. [http://www.biology-online.org/dictionary/Greater_cornua] ## Synonyms - * cornu majus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496] - * cornu majus ossis hyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cornua majora [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Greater_cornua] - * greater cornu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496] - * greater cornua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Greater_cornua] - * greater horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496] - * greater horn of hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496] - * greater horn of hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59496] - * tyrohal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Greater_cornua] - * tyrohals [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Greater_cornua] - * epibranchial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CHECKME:CHECKME] - * epibranchial of gill arch I [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CHECKME:CHECKME] - * epibranchial of pharyngeal arch III [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CHECKME:CHECKME] - * greater cornua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * greater horn of the hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hyoid_bone] - * hyoid bone greater cornu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002959] + * cornu majus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496 ] + * cornu majus ossis hyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cornua majora [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Greater_cornua ] + * greater cornu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496 ] + * greater cornua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Greater_cornua ] + * greater horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496 ] + * greater horn of hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496 ] + * greater horn of hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59496 ] + * tyrohal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Greater_cornua ] + * tyrohals [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Greater_cornua ] + * epibranchial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CHECKME:CHECKME ] + * epibranchial of gill arch I [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CHECKME:CHECKME ] + * epibranchial of pharyngeal arch III [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CHECKME:CHECKME ] + * greater cornua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * greater horn of the hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hyoid_bone ] + * hyoid bone greater cornu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002959 ] * hyoid bone long horn - * hyoid bone superior horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002959] - * hyoid bone upper horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002959] + * hyoid bone superior horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002959 ] + * hyoid bone upper horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002959 ] * posterior horn of hyoid - * second horn of hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * second horn of hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Cross-references @@ -57,8 +57,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The greater cornua (or greater horns) of the hyoid bone project backward from the lateral borders of the body; they are flattened from above downward and diminish in size from before backward; each ends in a tubercle to which is fixed the lateral hyothyroid ligament. The upper surface is rough close to its lateral border, for muscular attachments: the largest of these are the origins of the hyoglossus and Constrictor pharyngis medius which extend along the whole length of the cornu; the digastric muscle and stylohyoid muscle have small insertions in front of these near the junction of the body with the cornu. To the medial border the hyothyroid membrane is attached, while the anterior half of the lateral border gives insertion to the thyrohyoid. The greater cornua derive from the 3rd pharyngeal arches[Wikipedia:Greater_cornu]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004097.md b/md/UBERON/97/UBERON_0004097.md index 1719edeaab..9e85a812c8 100644 --- a/md/UBERON/97/UBERON_0004097.md +++ b/md/UBERON/97/UBERON_0004097.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004097 * *Label* = obsolete renin-aldosterone axis - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003350] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003350 ] ## Synonyms @@ -25,9 +25,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004097 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_0004197.md b/md/UBERON/97/UBERON_0004197.md index ee564a80a9..926e668377 100644 --- a/md/UBERON/97/UBERON_0004197.md +++ b/md/UBERON/97/UBERON_0004197.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004197 * *Label* = proximal convoluted tubule segment 2 - * *Definition* = The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072032] + * *Definition* = The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072032 ] ## Synonyms * S2 portion of renal tubule * S2 portion of tubule - * proximal tubule segment 2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002613] - * segment 2 of proximal tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:29659] - * S2 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072032] + * proximal tubule segment 2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002613 ] + * segment 2 of proximal tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:29659 ] + * S2 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072032 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0006433 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004297.md b/md/UBERON/97/UBERON_0004297.md index 2d6f7397fb..811be26527 100644 --- a/md/UBERON/97/UBERON_0004297.md +++ b/md/UBERON/97/UBERON_0004297.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004297 * *Label* = respiratory system blood vessel smooth muscle - * *Definition* = A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel smooth muscle that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * smooth muscle tissue of blood vessel of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * smooth muscle tissue of blood vessel of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system blood vessel](../../UBERON/04/UBERON_0003504.md) and [smooth muscle tissue](../../UBERON/35/UBERON_0001135.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004397.md b/md/UBERON/97/UBERON_0004397.md index 140df835b5..92505c01fb 100644 --- a/md/UBERON/97/UBERON_0004397.md +++ b/md/UBERON/97/UBERON_0004397.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004397 * *Label* = epiphysis of third metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone of digit 3 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * metatarsal 3 epiphysis - * third metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86313] + * third metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86313 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 3](../../UBERON/52/UBERON_0003652.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004497.md b/md/UBERON/97/UBERON_0004497.md index 4dcdbaa432..dd1a9c1130 100644 --- a/md/UBERON/97/UBERON_0004497.md +++ b/md/UBERON/97/UBERON_0004497.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004497 * *Label* = skeletal muscle tissue of gluteus maximus - * *Definition* = A portion of skeletal muscle tissue that is part of a gluteus maximus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a gluteus maximus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [gluteus maximus](../../UBERON/70/UBERON_0001370.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004697.md b/md/UBERON/97/UBERON_0004697.md index 7f73d5e881..acdef79ad4 100644 --- a/md/UBERON/97/UBERON_0004697.md +++ b/md/UBERON/97/UBERON_0004697.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004697 * *Label* = Peyer's patch germinal center - * *Definition* = area of the Peyer's patch where B cells proliferate and differentiate into plasma cells [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002391] + * *Definition* = area of the Peyer's patch where B cells proliferate and differentiate into plasma cells [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002391 ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0000734 - * UMLS:C1711398 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Peyer_s_Patch_Germinal_Center] + * UMLS:C1711398 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Peyer_s_Patch_Germinal_Center ] * ncithesaurus:Peyer_s_Patch_Germinal_Center ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [germinal center](../../UBERON/54/UBERON_0010754.md) and [part_of](../../BFO/50/BFO_0000050.md) some [Peyer's patch](../../UBERON/11/UBERON_0001211.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004797.md b/md/UBERON/97/UBERON_0004797.md index 9364a71331..806bed36ba 100644 --- a/md/UBERON/97/UBERON_0004797.md +++ b/md/UBERON/97/UBERON_0004797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004797 * *Label* = blood vessel layer - * *Definition* = An organ component layer that is part of a blood vessel. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An organ component layer that is part of a blood vessel. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [organ component layer](../../UBERON/23/UBERON_0004923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [blood vessel](../../UBERON/81/UBERON_0001981.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004797 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004897.md b/md/UBERON/97/UBERON_0004897.md index e85b1ffa65..81f937505d 100644 --- a/md/UBERON/97/UBERON_0004897.md +++ b/md/UBERON/97/UBERON_0004897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004897 * *Label* = right lung accessory lobe lobar bronchus mesenchyme - * *Definition* = The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012640] + * *Definition* = The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012640 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus of right lung](../../UBERON/04/UBERON_0003404.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right lung accessory lobe](../../UBERON/90/UBERON_0004890.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0004997.md b/md/UBERON/97/UBERON_0004997.md index 4121c81885..0d32312be0 100644 --- a/md/UBERON/97/UBERON_0004997.md +++ b/md/UBERON/97/UBERON_0004997.md @@ -3,35 +3,35 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004997 * *Label* = mucosa of pyloric antrum - * *Definition* = A mucosa that is part of a pyloric antrum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a pyloric antrum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * antral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004107] - * antrum of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antrum of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of antrum of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of antrum of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of stomach pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of stomach pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of antrum of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of stomach pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of antrum of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach pyloric antrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric antrum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric antrum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric antrum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric antrum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric antrum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric antrum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric antrum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric antrum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * gastric antrum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004107] + * antral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004107 ] + * antrum of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antrum of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of antrum of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of antrum of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of stomach pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of stomach pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of antrum of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of stomach pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of antrum of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach pyloric antrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric antrum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric antrum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric antrum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric antrum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric antrum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric antrum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric antrum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric antrum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * gastric antrum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004107 ] ## Cross-references @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pyloric antrum](../../UBERON/65/UBERON_0001165.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005097.md b/md/UBERON/97/UBERON_0005097.md index 91b30212a0..8175513fa8 100644 --- a/md/UBERON/97/UBERON_0005097.md +++ b/md/UBERON/97/UBERON_0005097.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005097 * *Label* = renal connecting tubule - * *Definition* = The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072027[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Connecting_tubule] + * *Definition* = The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072027, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Connecting_tubule ] ## Synonyms - * connecting tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002610] - * kidney connecting tubule [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002610] - * tubulus renalis arcuatus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Connecting_tubule[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * connecting tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002610 ] + * kidney connecting tubule [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002610 ] + * tubulus renalis arcuatus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Connecting_tubule, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005197.md b/md/UBERON/97/UBERON_0005197.md index bb45654abf..2a14a9f6a2 100644 --- a/md/UBERON/97/UBERON_0005197.md +++ b/md/UBERON/97/UBERON_0005197.md @@ -7,7 +7,7 @@ ## Synonyms - * cervical segmental spinal nerves C1-7 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001822] + * cervical segmental spinal nerves C1-7 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001822 ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005297.md b/md/UBERON/97/UBERON_0005297.md index 2bc1f82b00..aceeedb316 100644 --- a/md/UBERON/97/UBERON_0005297.md +++ b/md/UBERON/97/UBERON_0005297.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005297 * *Label* = testis sex cord - * *Definition* = The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Testis_cords] + * *Definition* = The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Testis_cords ] * *Comment* = check primary vs testis ## Synonyms - * testis cord [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0006424] - * testis primary sex cords [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0002011] + * testis cord [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0006424 ] + * testis primary sex cords [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0002011 ] * primary sex cord * testis primitive sex cord @@ -33,7 +33,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [testis](../../UBERON/73/UBERON_0000473.md) and [sex cord](../../UBERON/95/UBERON_0005295.md) ## Other Logical Axioms @@ -41,8 +41,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005397.md b/md/UBERON/97/UBERON_0005397.md index 24d81f388d..dcc781bb79 100644 --- a/md/UBERON/97/UBERON_0005397.md +++ b/md/UBERON/97/UBERON_0005397.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005397 * *Label* = brain arachnoid mater - * *Definition* = An arachnoid mater that surrounds a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An arachnoid mater that surrounds a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * brain arachnoid matter [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000814] - * cranial arachnoid mater [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83981] + * brain arachnoid matter [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000814 ] + * cranial arachnoid mater [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83981 ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [surrounds](../../RO/21/RO_0002221.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The middle membrane of the three mammalian meninges covering the brain and spinal cord. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In fishes, the meninges consist of a single membrane, the primitive meninx, wrapped around the brain and spinal cord. With the adoption of terrestrial life, the meninges doubled. In amphibians, reptiles, and birds, the meninges include a thick outer dura mater derived from mesoderm and a thin inner secondary meninx. (...) In mammals, the dura mater persists, but division of the secondary meninx yields both the arachnoid and the pia mater from ectomesoderm.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005497.md b/md/UBERON/97/UBERON_0005497.md index 81fc6858a1..e5c39ef237 100644 --- a/md/UBERON/97/UBERON_0005497.md +++ b/md/UBERON/97/UBERON_0005497.md @@ -7,11 +7,11 @@ ## Synonyms - * non neural ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001178] - * ventral ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001178] - * epidermal ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] - * epithelial ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] - * surface ectoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000002] + * non neural ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001178 ] + * ventral ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001178 ] + * epidermal ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] + * epithelial ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] + * surface ectoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000002 ] ## Cross-references @@ -45,8 +45,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = In the early gastrula of vertebrates, factors from the organizer (e.g. noggin, chordin, and follistatin in Xenopus) antagonize the epidermalizing factor bone morphogenetic protein 4 (BMP4), thus dividing the epiblast into neuroectoderm. In Drosophila, decapentaplegic, the homologue of BMP4, interacts similarly with the protein short gastrulation, the homologue of chordin. Thus, a comparable molecular mechanism for distinguishing non-neural ectoderm from neural ectoderm was probably present in the common ancestor of all bilaterally symmetrical animals.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005597.md b/md/UBERON/97/UBERON_0005597.md index e3345f183e..eb63e68665 100644 --- a/md/UBERON/97/UBERON_0005597.md +++ b/md/UBERON/97/UBERON_0005597.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005597 * *Label* = lung primordium - * *Definition* = A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0001002] + * *Definition* = A pair of lateral diverticula just over the liver rudiment representing the primordia of the lungs, formed by the floor of the foregut just anterior to the liver diverticulum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0001002 ] ## Synonyms - * lateral diverticula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0001002] - * lung endoderm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EFO:0002578] + * lateral diverticula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0001002 ] + * lung endoderm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EFO:0002578 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005697.md b/md/UBERON/97/UBERON_0005697.md index f61ff8b812..0422b96229 100644 --- a/md/UBERON/97/UBERON_0005697.md +++ b/md/UBERON/97/UBERON_0005697.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005697 * *Label* = pedal digit 3 mesenchyme - * *Definition* = Mesenchyme that is part of a pedal digit 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pedal digit 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 3 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 3 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 3](../../UBERON/33/UBERON_0003633.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005797.md b/md/UBERON/97/UBERON_0005797.md index 35de1ddfcd..cbc356118e 100644 --- a/md/UBERON/97/UBERON_0005797.md +++ b/md/UBERON/97/UBERON_0005797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005797 * *Label* = bipartite uterus - * *Definition* = the bipartite uterus is y-shaped externally and divided internally (ungulates, carnivores) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.shsu.edu/~bio_mlt/Chap14.html] + * *Definition* = the bipartite uterus is y-shaped externally and divided internally (ungulates, carnivores) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.shsu.edu/~bio_mlt/Chap14.html ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005797 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005897.md b/md/UBERON/97/UBERON_0005897.md index 98f986495f..3d9b82e240 100644 --- a/md/UBERON/97/UBERON_0005897.md +++ b/md/UBERON/97/UBERON_0005897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005897 * *Label* = manus bone - * *Definition* = A bone that is part of the manus skeleton. Note that this includes the carpal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the manus skeleton. Note that this includes the carpal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -15,7 +15,7 @@ * bone of pectoral limb autopodium * forelimb autopod bone * forelimb autopodium bone - * hand bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000619] + * hand bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000619 ] ## Cross-references @@ -34,7 +34,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms @@ -42,8 +42,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0005997.md b/md/UBERON/97/UBERON_0005997.md index 37f635bf67..2c191d091d 100644 --- a/md/UBERON/97/UBERON_0005997.md +++ b/md/UBERON/97/UBERON_0005997.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005997 * *Label* = tricuspid valve anulus - * *Definition* = the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010621] + * *Definition* = the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010621 ] ## Synonyms - * anulus of tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9500] - * fibrous ring of tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9500] - * tricuspid anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9500] - * tricuspid valvar anulus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9500] + * anulus of tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9500 ] + * fibrous ring of tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9500 ] + * tricuspid anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9500 ] + * tricuspid valvar anulus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9500 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [fibrous ring of heart](../../UBERON/08/UBERON_0006008.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tricuspid valve](../../UBERON/34/UBERON_0002134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006097.md b/md/UBERON/97/UBERON_0006097.md index 95dff5b7e3..baee23fca0 100644 --- a/md/UBERON/97/UBERON_0006097.md +++ b/md/UBERON/97/UBERON_0006097.md @@ -6,22 +6,22 @@ ## Synonyms - * ventral external arcuate fiber bundle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1628] - * ventral external arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72631] - * ventral external arcuate fibers [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1628] - * ventral external arcuate tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72631] - * fibrae arcuatae externae anteriores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:797[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae arcuatae externae ventrales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:797[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibrae circumpyramidales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:797[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * fibre arcuatae superficiales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:797[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ventral external arcuate fiber bundle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1628 ] + * ventral external arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72631 ] + * ventral external arcuate fibers [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1628 ] + * ventral external arcuate tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72631 ] + * fibrae arcuatae externae anteriores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:797, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae arcuatae externae ventrales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:797, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibrae circumpyramidales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:797, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * fibre arcuatae superficiales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:797, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:vea * FMA:72631 * NIF_GrossAnatomy:birnlex_1628 - * NeuroNames:797 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1628] - * UMLS:C0175553 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1628] + * NeuroNames:797 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1628 ] + * UMLS:C0175553 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1628 ] ## Subsets @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006197.md b/md/UBERON/97/UBERON_0006197.md index 246e642015..0967ae6304 100644 --- a/md/UBERON/97/UBERON_0006197.md +++ b/md/UBERON/97/UBERON_0006197.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006197 * *Label* = auricular vein - * *Definition* = Any vein serving the ear region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.thefreedictionary.com/auricular+vein] + * *Definition* = Any vein serving the ear region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.thefreedictionary.com/auricular+vein ] * *Comment* = Taxon notes: In humans this refers to either the anterior or posterior auricular vein, passing in front of or behind the ear. This class also groups other auricular veins, including the greater, ventral, central auricular nerves. These may exhibit different branching structures. In the pig, the external jugular branches to the maxillary to the caudal auricular to the middle auricular, then onto various unique patterns ## Synonyms - * vena auriculares [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * venae auriculares [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena auriculares [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * venae auriculares [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references - * UMLS:C2698201 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Auricular_Vein] + * UMLS:C2698201 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Auricular_Vein ] * ncithesaurus:Auricular_Vein ## Subsets @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006297.md b/md/UBERON/97/UBERON_0006297.md index 28f7f033e4..20ccd95efc 100644 --- a/md/UBERON/97/UBERON_0006297.md +++ b/md/UBERON/97/UBERON_0006297.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006497.md b/md/UBERON/97/UBERON_0006497.md index 2b53cac832..5bd6feaaa0 100644 --- a/md/UBERON/97/UBERON_0006497.md +++ b/md/UBERON/97/UBERON_0006497.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006497 * *Label* = interosseous muscle of pes - * *Definition* = An interosseous muscle that is part of a pes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interosseous muscle that is part of a pes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * foot interosseous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37456] - * foot interosseus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002302] - * interosseous of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37456] + * foot interosseous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37456 ] + * foot interosseus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002302 ] + * interosseous of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37456 ] * pes interosseous muscle ## Cross-references @@ -17,7 +17,7 @@ * FMA:37456 * MA:0002302 * SCTID:181714004 - * UMLS:C0448494 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Interosseous_Muscle] + * UMLS:C0448494 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Interosseous_Muscle ] * ncithesaurus:Foot_Interosseous_Muscle ## Subsets @@ -31,7 +31,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interosseous muscle](../../UBERON/08/UBERON_0006508.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -39,8 +39,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Interroseous muscles are short digital muscles found together on the plantar aspect of the hindlimb. They act as shock absorbers for the pes, and closely resemble the interossei found in the forelimb. They originate from the proximal ends of all metatarsal bones and initially insert on the sesamoid bones at the metatarsophalangeal joints. The interosseous are then continued by distal sesamoidean ligaments which join the extensor tendons and attach to the phalanges[MURDOCH:920]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006597.md b/md/UBERON/97/UBERON_0006597.md index 61ee36a1b3..538544fbae 100644 --- a/md/UBERON/97/UBERON_0006597.md +++ b/md/UBERON/97/UBERON_0006597.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006597 * *Label* = quadrate bone - * *Definition* = Ossified pars articularis of the palatoquadrate cartilage. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000525[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Quadrate_bone] + * *Definition* = Ossified pars articularis of the palatoquadrate cartilage. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000525, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Quadrate_bone ] * *Comment* = Taxon notes: In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus. AO notes: Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone.[TAO:0000621] ## Synonyms - * quadrate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000621] - * quadrate bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000525] - * quadrate - incus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000689] + * quadrate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000621 ] + * quadrate bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000525 ] + * quadrate - incus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000689 ] ## Cross-references @@ -48,8 +48,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG] * *[external_comment](../../UBPROP/05/UBPROP_0000005.md)* = The quadrate commonly has a triangular shape, with its lower vertex, or condyle, for articulation with the lower jaw, and an elongate postero-ventral or postero-dorsal elongate process. The presence of an elongate postero-ventral or postero-dorsal process is a synapomorphy of teleosts (Arratia and Schultze, 1990; Arratia, 1999).[TAO] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0006697.md b/md/UBERON/97/UBERON_0006697.md index 877811dcfe..a949acdd63 100644 --- a/md/UBERON/97/UBERON_0006697.md +++ b/md/UBERON/97/UBERON_0006697.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006697 * *Label* = mammillotectal axonal tract - * *Definition* = The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061375] + * *Definition* = The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061375 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0007097.md b/md/UBERON/97/UBERON_0007097.md index 95dabc411a..174cc50e25 100644 --- a/md/UBERON/97/UBERON_0007097.md +++ b/md/UBERON/97/UBERON_0007097.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007097 * *Label* = chordo neural hinge - * *Definition* = Portion of tissue that is posterior to the developing notochord during tail bud extension. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001082[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dev.biologists.org/content/136/10/1591.full] + * *Definition* = Portion of tissue that is posterior to the developing notochord during tail bud extension. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001082, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dev.biologists.org/content/136/10/1591.full ] * *Comment* = In mouse and chick, the derivative of the NSB (with a minor contribution from the CLE), the `chordo-neural-hinge'(CNH) (Cambray and Wilson, 2007; Catala et al., 1995; Charrier et al., 1999), contains progenitors for the ventral neural tube, somites and notochord (Cambray and Wilson, 2002; McGrew et al., 2008). The CNH is continuous with the most recently formed neural tube and notochord (Fig. 2C-D?). By contrast, the tissue immediately caudal to the CNH exclusively produces somites in mouse and chick (McGrew et al., 2008). ## Synonyms - * chordoneural hinge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001382] + * chordoneural hinge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001382 ] ## Cross-references @@ -38,8 +38,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Portion of tissue is a posterior to the developing notochord during tailbud extension.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = Although there is mounting evidence showing the comparability of events and formation of different nascent tissue types during gastrulation and tail development, recent work also suggests the presence of an ongoing stem cell population capable of contributing to multiple tissue types in the tail of several different vertebrates, situated in the chordoneural hinge region of the tail bud. It would seem likely that secondary signaling centers regulate the fate to be adopted by such pluripotent progenitors.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0007197.md b/md/UBERON/97/UBERON_0007197.md index 62faa4cfaf..e30a684370 100644 --- a/md/UBERON/97/UBERON_0007197.md +++ b/md/UBERON/97/UBERON_0007197.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007197 * *Label* = hermaphroditic organism - * *Definition* = Multi-cellular organism that can produce both male and female gametes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:MAH] + * *Definition* = Multi-cellular organism that can produce both male and female gametes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:MAH ] ## Synonyms - * dioecious organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BILA:0000029] - * hermaphrodite [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WBbt:0007849] + * dioecious organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BILA:0000029 ] + * hermaphrodite [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WBbt:0007849 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0007297.md b/md/UBERON/97/UBERON_0007297.md index 11c209db96..158dd8514b 100644 --- a/md/UBERON/97/UBERON_0007297.md +++ b/md/UBERON/97/UBERON_0007297.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007297 * *Label* = presumptive pronephric mesoderm - * *Definition* = A presumptive structure that has_potential_to_develop_into a pronephric mesoderm. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A presumptive structure that has_potential_to_develop_into a pronephric mesoderm. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * nephron primordium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001070] + * nephron primordium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001070 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has potential to develop into](../../RO/87/RO_0002387.md) some [pronephric mesoderm](../../UBERON/21/UBERON_0005721.md) and [presumptive structure](../../UBERON/98/UBERON_0006598.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0007497.md b/md/UBERON/97/UBERON_0007497.md index 14290f93c0..67d302c481 100644 --- a/md/UBERON/97/UBERON_0007497.md +++ b/md/UBERON/97/UBERON_0007497.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007497 * *Label* = developing epithelial placode - * *Definition* = A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000218[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + JB:DEF] + * *Definition* = A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000218, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = JB:DEF ] * *Comment* = Consider merging with ectodermal placode? In EHDAA2 this includes lens, nasal, otic epibranchial and trigeminal placodes ## Synonyms - * epithelial placode [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:0000112] + * epithelial placode [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:0000112 ] ## Cross-references @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has potential to develop into](../../RO/87/RO_0002387.md) some [anatomical structure](../../UBERON/61/UBERON_0000061.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = EHDAA2:0003112 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0007997.md b/md/UBERON/97/UBERON_0007997.md index 236c3eef15..611978bee5 100644 --- a/md/UBERON/97/UBERON_0007997.md +++ b/md/UBERON/97/UBERON_0007997.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007997 * *Label* = sesamoid bone of manus - * *Definition* = A sesamoid bone that is part of a manus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sesamoid bone that is part of a manus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * sesamoid bone of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:42353] + * sesamoid bone of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:42353 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) and [sesamoid bone](../../UBERON/79/UBERON_0001479.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0008297.md b/md/UBERON/97/UBERON_0008297.md index 371e9aefc0..49e2fe77ca 100644 --- a/md/UBERON/97/UBERON_0008297.md +++ b/md/UBERON/97/UBERON_0008297.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008297 * *Label* = pennaceous feather - * *Definition* = Pennaceous feathers are also known as contour feathers. This type of feather is present in most modern birds, and has been shown in some species of maniraptoran dinosaurs. Pennaceous feathers have a central shaft (or rachis) with vanes spreading to either side. These vanes are composed of a high number of flattened barbs, that are connected to one another with barbules. The barbules are tiny strands that criss-cross on the flattened side s of the barbs. This forms a kind of miniature velcro-like mesh that holds all the barbs together, stabilizing the vanes. Flight feathers (remiges and rectrices) are specialized types of pennaceous feathers, adapted for high loadings and often strongly asymmetric for improved flight performance[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pennaceous_feather] + * *Definition* = Pennaceous feathers are also known as contour feathers. This type of feather is present in most modern birds, and has been shown in some species of maniraptoran dinosaurs. Pennaceous feathers have a central shaft (or rachis) with vanes spreading to either side. These vanes are composed of a high number of flattened barbs, that are connected to one another with barbules. The barbules are tiny strands that criss-cross on the flattened side s of the barbs. This forms a kind of miniature velcro-like mesh that holds all the barbs together, stabilizing the vanes. Flight feathers (remiges and rectrices) are specialized types of pennaceous feathers, adapted for high loadings and often strongly asymmetric for improved flight performance[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pennaceous_feather ] ## Synonyms - * contour feather [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pennaceous_feather] - * pennaceous [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pennaceous_feather] + * contour feather [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pennaceous_feather ] + * pennaceous [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pennaceous_feather ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0008397.md b/md/UBERON/97/UBERON_0008397.md index c9507f3f5e..0b4259ce67 100644 --- a/md/UBERON/97/UBERON_0008397.md +++ b/md/UBERON/97/UBERON_0008397.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008397 * *Label* = tracheobronchial epithelium - * *Definition* = Epithelium pertaining to the trachea and bronchi. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Dorlands_Medical_Dictionary:MerckMedicus] + * *Definition* = Epithelium pertaining to the trachea and bronchi. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Dorlands_Medical_Dictionary:MerckMedicus ] ## Synonyms - * bronchotracheal epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002925] + * bronchotracheal epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002925 ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0008597.md b/md/UBERON/97/UBERON_0008597.md index 025d25abbf..de5f49bcbb 100644 --- a/md/UBERON/97/UBERON_0008597.md +++ b/md/UBERON/97/UBERON_0008597.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008597 * *Label* = depressor anguli oris muscle - * *Definition* = The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_anguli_oris_muscle] + * *Definition* = The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_anguli_oris_muscle ] ## Synonyms - * depressor anguli oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_anguli_oris_muscle] - * musculus depressor anguli oris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_anguli_oris_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * triangularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_anguli_oris_muscle] - * triangularis muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Depressor_anguli_oris_muscle] + * depressor anguli oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_anguli_oris_muscle ] + * musculus depressor anguli oris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_anguli_oris_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * triangularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_anguli_oris_muscle ] + * triangularis muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Depressor_anguli_oris_muscle ] ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0008897.md b/md/UBERON/97/UBERON_0008897.md index 1e1df58b34..019359b898 100644 --- a/md/UBERON/97/UBERON_0008897.md +++ b/md/UBERON/97/UBERON_0008897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008897 * *Label* = fin - * *Definition* = An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004649[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Fin] + * *Definition* = An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004649, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Fin ] * *Comment* = This class groups together various structures that may have arisen through convergent evolution, including, for example, the dorsal fin of a cetacean ## Synonyms @@ -45,8 +45,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure involved in locomotion.[TAO] * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure involved in locomotion.[VSAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009097.md b/md/UBERON/97/UBERON_0009097.md index 812ef0a08d..77452bc552 100644 --- a/md/UBERON/97/UBERON_0009097.md +++ b/md/UBERON/97/UBERON_0009097.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009097 * *Label* = gravid organism - * *Definition* = An organism containing a developing embryo, fetus, or unborn offspring within the body. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004733] + * *Definition* = An organism containing a developing embryo, fetus, or unborn offspring within the body. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004733 ] ## Synonyms - * gravid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004733] - * pregnant adult [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004733] - * pregnant adult stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004733] + * gravid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004733 ] + * pregnant adult [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004733 ] + * pregnant adult stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004733 ] * pregnant organism - * pregnant stage [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0004733] + * pregnant stage [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0004733 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [adult organism](../../UBERON/23/UBERON_0007023.md) and [has_part](../../BFO/51/BFO_0000051.md) some [embryo](../../UBERON/22/UBERON_0000922.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009197.md b/md/UBERON/97/UBERON_0009197.md index 8e0d36233d..a96a284d97 100644 --- a/md/UBERON/97/UBERON_0009197.md +++ b/md/UBERON/97/UBERON_0009197.md @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basioccipital endochondral element](../../UBERON/48/UBERON_0015048.md) and [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) ## Other Logical Axioms @@ -35,8 +35,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009497.md b/md/UBERON/97/UBERON_0009497.md index 22fee779a5..2cfa306c85 100644 --- a/md/UBERON/97/UBERON_0009497.md +++ b/md/UBERON/97/UBERON_0009497.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009497 * *Label* = epithelium of foregut-midgut junction - * *Definition* = An epithelium that is part of a foregut-midgut junction. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a foregut-midgut junction. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [foregut-midgut junction](../../UBERON/35/UBERON_0006235.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009597.md b/md/UBERON/97/UBERON_0009597.md index 00ef2ee8b1..d76d41c3fe 100644 --- a/md/UBERON/97/UBERON_0009597.md +++ b/md/UBERON/97/UBERON_0009597.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009597 * *Label* = mesenchyme of interdigital region between digits 2 and 3 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 2 and 3. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 2 and 3. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between digits 2 and 3](../../UBERON/19/UBERON_0006019.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009697.md b/md/UBERON/97/UBERON_0009697.md index f1079a6ff3..db26139790 100644 --- a/md/UBERON/97/UBERON_0009697.md +++ b/md/UBERON/97/UBERON_0009697.md @@ -6,8 +6,8 @@ ## Synonyms - * appendix epithelium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63581] - * epithelium of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63581] + * appendix epithelium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63581 ] + * epithelium of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63581 ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0009897.md b/md/UBERON/97/UBERON_0009897.md index 6b81dd0a1c..8e5a1e0963 100644 --- a/md/UBERON/97/UBERON_0009897.md +++ b/md/UBERON/97/UBERON_0009897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009897 * *Label* = right auditory cortex - * *Definition* = An auditory cortex that is in the left side of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An auditory cortex that is in the left side of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [auditory cortex](../../UBERON/93/UBERON_0001393.md) and [in_left_side_of](../../BSPO/20/BSPO_0000120.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0010197.md b/md/UBERON/97/UBERON_0010197.md index 19cb33ff37..1c7604a3f2 100644 --- a/md/UBERON/97/UBERON_0010197.md +++ b/md/UBERON/97/UBERON_0010197.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010197 * *Label* = trunk of common carotid artery - * *Definition* = The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * common carotid arterial trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:69323] - * common carotid artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000306[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * common carotid arterial trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:69323 ] + * common carotid artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000306, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0010297.md b/md/UBERON/97/UBERON_0010297.md index 03e0c37923..19a38ab2f1 100644 --- a/md/UBERON/97/UBERON_0010297.md +++ b/md/UBERON/97/UBERON_0010297.md @@ -33,8 +33,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0010397.md b/md/UBERON/97/UBERON_0010397.md index bdc84090c9..1e03d678e8 100644 --- a/md/UBERON/97/UBERON_0010397.md +++ b/md/UBERON/97/UBERON_0010397.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010397 * *Label* = efferent lymphatic vessel - * *Definition* = Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] ## Synonyms - * efferent lymphatic vessel [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_lymph_vessel] - * efferent lymphatic vessels [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Efferent_lymph_vessel] + * efferent lymphatic vessel [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_lymph_vessel ] + * efferent lymphatic vessels [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Efferent_lymph_vessel ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0010697.md b/md/UBERON/97/UBERON_0010697.md index fad27d6390..fa445c42dd 100644 --- a/md/UBERON/97/UBERON_0010697.md +++ b/md/UBERON/97/UBERON_0010697.md @@ -7,8 +7,8 @@ ## Synonyms - * hind limb digit metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit metatarsal cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit metatarsal cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [pedal digit metatarsal endochondral element](../../UBERON/36/UBERON_0015036.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011197.md b/md/UBERON/97/UBERON_0011197.md index 34986cb46f..061bca436e 100644 --- a/md/UBERON/97/UBERON_0011197.md +++ b/md/UBERON/97/UBERON_0011197.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011197 * *Label* = parathyroid epithelium - * *Definition* = An epithelium that is part of a parathyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epithelium that is part of a parathyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * CALOHA:TS-2141 - * UMLS:C1709466 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Parathyroid_Gland_Epithelial_Tissue] + * UMLS:C1709466 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Parathyroid_Gland_Epithelial_Tissue ] * ncithesaurus:Parathyroid_Gland_Epithelial_Tissue ## Subsets @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parathyroid gland](../../UBERON/32/UBERON_0001132.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011597.md b/md/UBERON/97/UBERON_0011597.md index d9ed0169d8..de479b378f 100644 --- a/md/UBERON/97/UBERON_0011597.md +++ b/md/UBERON/97/UBERON_0011597.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011597 * *Label* = bone of upper jaw - * *Definition* = Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Editor notes: Do not manually classify under here - bones are automatically classified ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011697.md b/md/UBERON/97/UBERON_0011697.md index 10436c5f14..4445002517 100644 --- a/md/UBERON/97/UBERON_0011697.md +++ b/md/UBERON/97/UBERON_0011697.md @@ -6,7 +6,7 @@ ## Synonyms - * extraembryonic umbilical artery right [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001721] + * extraembryonic umbilical artery right [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001721 ] ## Cross-references @@ -28,8 +28,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011797.md b/md/UBERON/97/UBERON_0011797.md index b4c8e6b2c1..f2080a040d 100644 --- a/md/UBERON/97/UBERON_0011797.md +++ b/md/UBERON/97/UBERON_0011797.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011797 * *Label* = secondary remex feather - * *Definition* = A remex feather that is connected to the ulna [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather#Secondaries] + * *Definition* = A remex feather that is connected to the ulna [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather#Secondaries ] * *Comment* = In some species, the ligaments that bind these remiges to the bone connect to small, rounded projections, known as quill knobs, on the ulna; in other species, no such knobs exist. Secondary feathers remain close together in flight (they cannot be individually separated like the primaries can) and help to provide lift by creating the airfoil shape of the bird's wing. Secondaries tend to be shorter and broader than primaries, with blunter ends ## Synonyms * secondary flight feather * secondary remex - * secondary remiges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * secondary remiges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [ulna](../../UBERON/24/UBERON_0001424.md) and [remex feather](../../UBERON/95/UBERON_0011795.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011797 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011897.md b/md/UBERON/97/UBERON_0011897.md index 1a92c80f7b..a60d0d8c0c 100644 --- a/md/UBERON/97/UBERON_0011897.md +++ b/md/UBERON/97/UBERON_0011897.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011897 * *Label* = cardiac endomysium - * *Definition* = Reticular tissue which surrounds a cardiac myocyte. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83112] + * *Definition* = Reticular tissue which surrounds a cardiac myocyte. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83112 ] ## Synonyms - * Endomysium of cardiac muscle cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83112] - * Fibrocollagenous sheath of cardiac muscle cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83112] + * Endomysium of cardiac muscle cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83112 ] + * Fibrocollagenous sheath of cardiac muscle cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83112 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endomysium](../../UBERON/95/UBERON_0011895.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cardiac muscle tissue](../../UBERON/33/UBERON_0001133.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0011997.md b/md/UBERON/97/UBERON_0011997.md index 3246559f12..0d8bbe88bd 100644 --- a/md/UBERON/97/UBERON_0011997.md +++ b/md/UBERON/97/UBERON_0011997.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011997 * *Label* = coelom - * *Definition* = The structure that contains the coelemic cavity. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_cavity[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Coelom] + * *Definition* = The structure that contains the coelemic cavity. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_cavity, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Coelom ] * *Comment* = Editor notes: EHDAA2 distingsuishes between the lumen, the lining, and the 'coelomic cavity', which despire it's name, is not a space - it is the aggregate of space plus lining. ## Synonyms * coelem - * coelomic cavity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004731] + * coelomic cavity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004731 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = coelomic - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011997 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0012197.md b/md/UBERON/97/UBERON_0012197.md index 683eda8519..c6b319d8ec 100644 --- a/md/UBERON/97/UBERON_0012197.md +++ b/md/UBERON/97/UBERON_0012197.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012197 * *Label* = intercostal vein - * *Definition* = The intercostal veins are a group of veins which drain the area between the ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_veins] + * *Definition* = The intercostal veins are a group of veins which drain the area between the ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_veins ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [located_in](../../RO/25/RO_0001025.md) some [intercostal space](../../UBERON/98/UBERON_0012198.md) and [vein](../../UBERON/38/UBERON_0001638.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012197 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0012297.md b/md/UBERON/97/UBERON_0012297.md index a9d04cb3cb..5bf49aeaf6 100644 --- a/md/UBERON/97/UBERON_0012297.md +++ b/md/UBERON/97/UBERON_0012297.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012297 * *Label* = male urethral crest - * *Definition* = narrow longitudinal fold of mucosa on the posterior wall of the male urethra, extending from the uvula of the bladder through the prostatic urethra; when distended, it may serve to prevent the passage of the semen backward into the bladder; on either side of the male urethral crest is a slightly depressed fossa, the prostatic sinus, the floor of which is perforated by the orifices of the prostatic ducts from the lateral lobes of the prostate; the ducts of the middle lobe open behind the crest; at the forepart of the crest, below its summit, is a median elevation, the colliculus seminalis, upon or within the margins of which are the orifices of the prostatic utricle and the slit-like openings of the ejaculatory ducts[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011841[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * *Definition* = narrow longitudinal fold of mucosa on the posterior wall of the male urethra, extending from the uvula of the bladder through the prostatic urethra; when distended, it may serve to prevent the passage of the semen backward into the bladder; on either side of the male urethral crest is a slightly depressed fossa, the prostatic sinus, the floor of which is perforated by the orifices of the prostatic ducts from the lateral lobes of the prostate; the ducts of the middle lobe open behind the crest; at the forepart of the crest, below its summit, is a median elevation, the colliculus seminalis, upon or within the margins of which are the orifices of the prostatic utricle and the slit-like openings of the ejaculatory ducts[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011841, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Synonyms - * crista phallica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crista urethralis masculinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urethral crest (male) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85270] - * urethral crest of male [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * crista phallica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crista urethralis masculinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urethral crest (male) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85270 ] + * urethral crest of male [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) and [urethral crest](../../UBERON/96/UBERON_0012296.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012297 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0012497.md b/md/UBERON/97/UBERON_0012497.md index 2a2f263b93..26feeb3a06 100644 --- a/md/UBERON/97/UBERON_0012497.md +++ b/md/UBERON/97/UBERON_0012497.md @@ -6,8 +6,8 @@ ## Synonyms - * lamina muscularis of rectal mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15687] - * lamina muscularis of rectal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:15687] + * lamina muscularis of rectal mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15687 ] + * lamina muscularis of rectal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:15687 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rectum](../../UBERON/52/UBERON_0001052.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0013397.md b/md/UBERON/97/UBERON_0013397.md index fb4581e1cd..79f3cae1e0 100644 --- a/md/UBERON/97/UBERON_0013397.md +++ b/md/UBERON/97/UBERON_0013397.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013397 * *Label* = stratum argenteum of choroid - * *Definition* = A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults. In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502] + * *Definition* = A silver reflective layer in the outer choroid, adjacent to the sclera, frequently present in fish larvae but not as frequent in adults. In species known to have a stratum argenteum as adults, like the toadfish (Toad- fishes), the tapetum lucidum is absent or vestigial and there is little choroidal melanin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502 ] ## Synonyms * choroid stratum argenteum - * stratum argenteum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:14738502] + * stratum argenteum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:14738502 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0013497.md b/md/UBERON/97/UBERON_0013497.md index 3bd7115116..d1a22ec3ff 100644 --- a/md/UBERON/97/UBERON_0013497.md +++ b/md/UBERON/97/UBERON_0013497.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013497 * *Label* = muscularis orbicularis - * *Definition* = A fringe of muscle running along the periphery of the panniculus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A fringe of muscle running along the periphery of the panniculus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Function notes: Hedgehogs roll into a ball via contraction of this muscle ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations * *[present_in_taxon](../../core#present/on/core#present_in_taxon.md)* = http://purl.obolibrary.org/obo/NCBITaxon_9363 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013497 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0013697.md b/md/UBERON/97/UBERON_0013697.md index 72300d5c81..6a93eb99ba 100644 --- a/md/UBERON/97/UBERON_0013697.md +++ b/md/UBERON/97/UBERON_0013697.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013697 * *Label* = exocrine pancreas epithelium - * *Definition* = Epithelium lining the exocrine pancreas. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2108] + * *Definition* = Epithelium lining the exocrine pancreas. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2108 ] ## Synonyms - * epithelium of exocrine pancreas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2108] - * exocrine pancreas epithelial cell [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CALOHA:TS-2108] + * epithelium of exocrine pancreas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2108 ] + * exocrine pancreas epithelial cell [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CALOHA:TS-2108 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [part_of](../../BFO/50/BFO_0000050.md) some [exocrine pancreas](../../UBERON/17/UBERON_0000017.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0014397.md b/md/UBERON/97/UBERON_0014397.md index 68d065ec31..07999db711 100644 --- a/md/UBERON/97/UBERON_0014397.md +++ b/md/UBERON/97/UBERON_0014397.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014397 * *Label* = lateral process of malleus - * *Definition* = A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=72288] + * *Definition* = A short projection from the base of the manubrium of the malleus, attached firmly to the drum membrane. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=72288 ] ## Synonyms - * processus lateralis (malleus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52770] - * processus lateralis mallei [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * processus lateralis malleus [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * processus lateralis (malleus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52770 ] + * processus lateralis mallei [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * processus lateralis malleus [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * short process of malleus - * tuberculum mallei [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tuberculum mallei [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -25,7 +25,7 @@ * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) * [skeletal element projection](../../UBERON/00/UBERON_4100000.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [malleus](../../UBERON/89/UBERON_0001689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [malleus bone](../../UBERON/89/UBERON_0001689.md) ## Equivalencies @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014397 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0014597.md b/md/UBERON/97/UBERON_0014597.md index 305466887d..578bc12e37 100644 --- a/md/UBERON/97/UBERON_0014597.md +++ b/md/UBERON/97/UBERON_0014597.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1354[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHlp [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1354[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus lateral parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHlp] - * paraventricular hypothalamic nucleus, descending division, lateral parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHlp] - * paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHlp] + * paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1354, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHlp [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1354, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus lateral parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHlp ] + * paraventricular hypothalamic nucleus, descending division, lateral parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHlp ] + * paraventricular nucleus of the hypothalamus, descending division, lateral parvicellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHlp ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014597 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0014697.md b/md/UBERON/97/UBERON_0014697.md index 2fbd8b8e84..61ecfb19d7 100644 --- a/md/UBERON/97/UBERON_0014697.md +++ b/md/UBERON/97/UBERON_0014697.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014697 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0014797.md b/md/UBERON/97/UBERON_0014797.md index fde161e7fc..449fad731d 100644 --- a/md/UBERON/97/UBERON_0014797.md +++ b/md/UBERON/97/UBERON_0014797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014797 * *Label* = hypobranchial group muscle - * *Definition* = A jaw muscle that arises from trunk somites and is innervated by spinal nerves. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] + * *Definition* = A jaw muscle that arises from trunk somites and is innervated by spinal nerves. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] ## Synonyms @@ -29,9 +29,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014797 * *[see also](../../so/rdf-schema#seeAlso.md)* = http://purl.obolibrary.org/obo/UBERON_2002200 +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_0014897.md b/md/UBERON/97/UBERON_0014897.md index cecab44dc1..ab80495cb3 100644 --- a/md/UBERON/97/UBERON_0014897.md +++ b/md/UBERON/97/UBERON_0014897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014897 * *Label* = obliquely striated somatic muscle - * *Definition* = A somatic muscle that consists of one or more obliquely striated muscle cells and any associated extracellular structures. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GOC:DOS] + * *Definition* = A somatic muscle that consists of one or more obliquely striated muscle cells and any associated extracellular structures. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GOC:DOS ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [CL_0008005](../../CL/05/CL_0008005.md) and [somatic muscle](../../UBERON/95/UBERON_0014895.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014897 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_0015097.md b/md/UBERON/97/UBERON_0015097.md index 28a968b0d4..602515857b 100644 --- a/md/UBERON/97/UBERON_0015097.md +++ b/md/UBERON/97/UBERON_0015097.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [distal carpal bone 5 endochondral element](../../UBERON/96/UBERON_0015096.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015097 + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000197.md b/md/UBERON/97/UBERON_2000197.md index 1933723cef..4605bcb6de 100644 --- a/md/UBERON/97/UBERON_2000197.md +++ b/md/UBERON/97/UBERON_2000197.md @@ -29,8 +29,10 @@ Obsoleted because this term refererences a teleost specific region of the habenu * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0008993 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_2000297.md b/md/UBERON/97/UBERON_2000297.md index 2ec8e7967a..5e004c724c 100644 --- a/md/UBERON/97/UBERON_2000297.md +++ b/md/UBERON/97/UBERON_2000297.md @@ -6,7 +6,7 @@ ## Synonyms - * nX [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000297] + * nX [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000297 ] ## Cross-references @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000397.md b/md/UBERON/97/UBERON_2000397.md index 765c6e86ff..266ed9878a 100644 --- a/md/UBERON/97/UBERON_2000397.md +++ b/md/UBERON/97/UBERON_2000397.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000497.md b/md/UBERON/97/UBERON_2000497.md index e7954fce65..75d4020cd4 100644 --- a/md/UBERON/97/UBERON_2000497.md +++ b/md/UBERON/97/UBERON_2000497.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000597.md b/md/UBERON/97/UBERON_2000597.md index 86cbde2e0c..74d1908b28 100644 --- a/md/UBERON/97/UBERON_2000597.md +++ b/md/UBERON/97/UBERON_2000597.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000797.md b/md/UBERON/97/UBERON_2000797.md index 7beda94630..29160e83c2 100644 --- a/md/UBERON/97/UBERON_2000797.md +++ b/md/UBERON/97/UBERON_2000797.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 28 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000797[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 28 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000797, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_2000897.md b/md/UBERON/97/UBERON_2000897.md index 9dbbc7c803..c8c0936d5d 100644 --- a/md/UBERON/97/UBERON_2000897.md +++ b/md/UBERON/97/UBERON_2000897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000897 * *Label* = hypaxial region somite 23 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2000997.md b/md/UBERON/97/UBERON_2000997.md index 0436f43c69..986030fb9b 100644 --- a/md/UBERON/97/UBERON_2000997.md +++ b/md/UBERON/97/UBERON_2000997.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001097.md b/md/UBERON/97/UBERON_2001097.md index 2d1d2ca24b..ef07a69ed0 100644 --- a/md/UBERON/97/UBERON_2001097.md +++ b/md/UBERON/97/UBERON_2001097.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001297.md b/md/UBERON/97/UBERON_2001297.md index 2420479eae..c63d78b8ed 100644 --- a/md/UBERON/97/UBERON_2001297.md +++ b/md/UBERON/97/UBERON_2001297.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001397.md b/md/UBERON/97/UBERON_2001397.md index 882f436774..50567f2419 100644 --- a/md/UBERON/97/UBERON_2001397.md +++ b/md/UBERON/97/UBERON_2001397.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001397 * *Label* = post-Weberian supraneural - * *Definition* = Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001697.md b/md/UBERON/97/UBERON_2001697.md index cbba301808..120170aa69 100644 --- a/md/UBERON/97/UBERON_2001697.md +++ b/md/UBERON/97/UBERON_2001697.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001697 * *Label* = transverse radial - * *Definition* = Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Recorded in some Cetopsidae, Clariidae and Austroglanididae (Siluriformes) (De Pinna et al., 2007). ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001797.md b/md/UBERON/97/UBERON_2001797.md index 000746cb1f..38a75666f2 100644 --- a/md/UBERON/97/UBERON_2001797.md +++ b/md/UBERON/97/UBERON_2001797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001797 * *Label* = epibranchial 1 bone uncinate process - * *Definition* = Epibranchial uncinate process that is part of epibranchial 1 bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Epibranchial uncinate process that is part of epibranchial 1 bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001897.md b/md/UBERON/97/UBERON_2001897.md index df33f4fa5e..802f55421b 100644 --- a/md/UBERON/97/UBERON_2001897.md +++ b/md/UBERON/97/UBERON_2001897.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001897 * *Label* = hypobranchial 4 element - * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is ventral, bilaterally paired and articulates with a median skeletal element medially and with a ceratobranchial 4 element laterally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2001997.md b/md/UBERON/97/UBERON_2001997.md index a6101ac75f..f1a1ba969b 100644 --- a/md/UBERON/97/UBERON_2001997.md +++ b/md/UBERON/97/UBERON_2001997.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001997 * *Label* = parietal-supraoccipital - * *Definition* = Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endodermal supraoccipital. Forms the dorso-posterior element of the dermatocranium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:GA_TG] + * *Definition* = Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endodermal supraoccipital. Forms the dorso-posterior element of the dermatocranium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:GA_TG ] * *Comment* = A parietal-supraoccipital or parieto-supraoccipital bone is an element present in Siluriformes. ## Synonyms - * parieto-supraoccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001997] - * supraoccipital [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001997] + * parieto-supraoccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001997 ] + * supraoccipital [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001997 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2002097.md b/md/UBERON/97/UBERON_2002097.md index b4f1e26c0b..35f39107d3 100644 --- a/md/UBERON/97/UBERON_2002097.md +++ b/md/UBERON/97/UBERON_2002097.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002097 * *Label* = sensory canal pore series - * *Definition* = Anatomical cluster that consists of more than one sensory canal pore. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of more than one sensory canal pore. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2005097.md b/md/UBERON/97/UBERON_2005097.md index 1a5667cecf..2c812f1d7d 100644 --- a/md/UBERON/97/UBERON_2005097.md +++ b/md/UBERON/97/UBERON_2005097.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_2005197.md b/md/UBERON/97/UBERON_2005197.md index c723c85027..d9f1a65cbe 100644 --- a/md/UBERON/97/UBERON_2005197.md +++ b/md/UBERON/97/UBERON_2005197.md @@ -7,7 +7,7 @@ ## Synonyms - * middle dorsal 3 ipsilateral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005197] + * middle dorsal 3 ipsilateral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005197 ] ## Cross-references @@ -29,8 +29,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_3000397.md b/md/UBERON/97/UBERON_3000397.md index 148d42209c..a0c139645b 100644 --- a/md/UBERON/97/UBERON_3000397.md +++ b/md/UBERON/97/UBERON_3000397.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000397 * *Label* = pars dentalis of premaxilla - * *Definition* = Tooth-bearing part of the premaxilla. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Tooth-bearing part of the premaxilla. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_3000597.md b/md/UBERON/97/UBERON_3000597.md index 98c19d15d1..c2cdc479db 100644 --- a/md/UBERON/97/UBERON_3000597.md +++ b/md/UBERON/97/UBERON_3000597.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_3000797.md b/md/UBERON/97/UBERON_3000797.md index bc75aa02b4..27fdeba52c 100644 --- a/md/UBERON/97/UBERON_3000797.md +++ b/md/UBERON/97/UBERON_3000797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000797 * *Label* = non-imbricate neural arch - * *Definition* = Neural arches that do not overlap, thus exposing the spinal cord dorsally. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Neural arches that do not overlap, thus exposing the spinal cord dorsally. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_3010097.md b/md/UBERON/97/UBERON_3010097.md index 23f0973dd3..314d97b063 100644 --- a/md/UBERON/97/UBERON_3010097.md +++ b/md/UBERON/97/UBERON_3010097.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010097 * *Label* = M. tarsalis posticus - * *Definition* = Originates on the medial border of the ligamentum calcanei and inserts along the ventral surface of the tibiale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the medial border of the ligamentum calcanei and inserts along the ventral surface of the tibiale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_3010197.md b/md/UBERON/97/UBERON_3010197.md index 846f73820a..4efbd5dc67 100644 --- a/md/UBERON/97/UBERON_3010197.md +++ b/md/UBERON/97/UBERON_3010197.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010197 * *Label* = lateral recess - * *Definition* = A part of the inferior cavity of the olfactory organ, found in anurans. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = A part of the inferior cavity of the olfactory organ, found in anurans. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_3010297.md b/md/UBERON/97/UBERON_3010297.md index ad96c5cccf..d2ab04a36b 100644 --- a/md/UBERON/97/UBERON_3010297.md +++ b/md/UBERON/97/UBERON_3010297.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010297 * *Label* = obsolete primary oogonium - * *Definition* = A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:EJS] + * *Definition* = A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:EJS ] ## Synonyms - * primary oogonia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010297] + * primary oogonia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010297 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000654 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/97/UBERON_3010797.md b/md/UBERON/97/UBERON_3010797.md index 55103a84fd..23f7e2156d 100644 --- a/md/UBERON/97/UBERON_3010797.md +++ b/md/UBERON/97/UBERON_3010797.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010797 * *Label* = m. ypsiloideus posterior - * *Definition* = Contraction depresses the ypsiloid cartilage; arises from the anterodorsal edge of the pubis deep to the m. rectus abdominis profundus and spreads anteriorly in a fan shape to insert on the lateral edges of the shaft and the posterior edges of the lateral processes of the ypsiloid cartilage . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BMZ] + * *Definition* = Contraction depresses the ypsiloid cartilage; arises from the anterodorsal edge of the pubis deep to the m. rectus abdominis profundus and spreads anteriorly in a fan shape to insert on the lateral edges of the shaft and the posterior edges of the lateral processes of the ypsiloid cartilage . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BMZ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_4000097.md b/md/UBERON/97/UBERON_4000097.md index 5fa4ae6c4d..6a6a92316b 100644 --- a/md/UBERON/97/UBERON_4000097.md +++ b/md/UBERON/97/UBERON_4000097.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_4000097 * *Label* = orthodentine - * *Definition* = Odontoid tissue that typically contains tubules and is acellular. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170] + * *Definition* = Odontoid tissue that typically contains tubules and is acellular. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170 ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = vertebrate_skeletal_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/97/UBERON_4200097.md b/md/UBERON/97/UBERON_4200097.md index d1b6677650..89f051bb7f 100644 --- a/md/UBERON/97/UBERON_4200097.md +++ b/md/UBERON/97/UBERON_4200097.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Ad - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0000398.md b/md/UBERON/98/UBERON_0000398.md index f571b65d87..9a8a264912 100644 --- a/md/UBERON/98/UBERON_0000398.md +++ b/md/UBERON/98/UBERON_0000398.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000398 * *Label* = cartilage tissue of sternum - * *Definition* = Any portion of cartilage tissue that is part of the sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Any portion of cartilage tissue that is part of the sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Examples: cartilage of manubrium, cartilage of xiphoid process ## Synonyms - * cartilage of sternum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:32567] + * cartilage of sternum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:32567 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sternum](../../UBERON/75/UBERON_0000975.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0000998.md b/md/UBERON/98/UBERON_0000998.md index e8bbb03fa5..04ca1761d7 100644 --- a/md/UBERON/98/UBERON_0000998.md +++ b/md/UBERON/98/UBERON_0000998.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000998 * *Label* = seminal vesicle - * *Definition* = Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001234[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] + * *Definition* = Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001234, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] * *Comment* = Function notes: The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70%[2] of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid. ## Synonyms * seminal gland - * glandula seminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001234] - * glandula vesiculosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001234] + * glandula seminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001234 ] + * glandula vesiculosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001234 ] * gon_male_sves * vas efferens - * vesicula seminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001234] - * vesicula seminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] - * vesiculae seminales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] - * vesicular gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] - * vesicular glands [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] - * vesicular seminalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] - * vesicul? seminales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * vesicul seminales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Seminal_vesicle] + * vesicula seminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001234 ] + * vesicula seminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] + * vesiculae seminales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] + * vesicular gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] + * vesicular glands [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] + * vesicular seminalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] + * vesicul? seminales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * vesicul seminales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Seminal_vesicle ] ## Cross-references @@ -38,7 +38,7 @@ * MIAA:0000171 * OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA * SCTID:181434004 - * UMLS:C0036628 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Seminal_Vesicle] + * UMLS:C0036628 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Seminal_Vesicle ] * VHOG:0001379 * Wikipedia:Seminal_vesicle * http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg @@ -69,8 +69,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Either of a pair of pouchlike glands situated on each side of the male urinary bladder that secrete seminal fluid and nourish and promote the movement of spermatozoa through the urethra. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (In mammalian testis) Along the way (the sperm travel), three accessory sex glands, the seminal vesicle, prostate, and bulbourethral (Cowper's) gland, respectively, add their secretions as sperm move from the testes to the urethra.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001098.md b/md/UBERON/98/UBERON_0001098.md index 09fb2852e6..4d01add92e 100644 --- a/md/UBERON/98/UBERON_0001098.md +++ b/md/UBERON/98/UBERON_0001098.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001098 * *Label* = incisor tooth - * *Definition* = Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Incisor_tooth] + * *Definition* = Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Incisor_tooth ] * *Comment* = Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat ## Synonyms - * incisor [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000349] + * incisor [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000349 ] ## Cross-references @@ -22,7 +22,7 @@ * MESH:A14.254.860.425 * OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA * SCTID:420856006 - * UMLS:C0021156 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Incisor] + * UMLS:C0021156 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Incisor ] * Wikipedia:Incisor_tooth * http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png * ncithesaurus:Incisor @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001198.md b/md/UBERON/98/UBERON_0001198.md index 9eb1f9cf4c..b9d1fc7d08 100644 --- a/md/UBERON/98/UBERON_0001198.md +++ b/md/UBERON/98/UBERON_0001198.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001198 * *Label* = superior suprarenal artery - * *Definition* = Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_suprarenal_artery] + * *Definition* = Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_suprarenal_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteriae suprarenales superiores [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Superior_suprarenal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteriae suprarenales superiores [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Superior_suprarenal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * superior adrenal branch of inferior phrenic artery * superior suprarenal branch of inferior phrenic artery @@ -17,7 +17,7 @@ * FMA:14863 * MA:0002057 * SCTID:303424001 - * UMLS:C0580876 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Superior_Suprarenal_Artery] + * UMLS:C0580876 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Superior_Suprarenal_Artery ] * Wikipedia:Superior_suprarenal_artery * http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png * http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001298.md b/md/UBERON/98/UBERON_0001298.md index 9f5f208264..bfb1f91448 100644 --- a/md/UBERON/98/UBERON_0001298.md +++ b/md/UBERON/98/UBERON_0001298.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001298 * *Label* = psoas major muscle - * *Definition* = The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Psoas_major_muscle] + * *Definition* = The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Psoas_major_muscle ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * psoas major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002358] - * m. psoas major [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Psoas_major_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * psoas major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002358 ] + * m. psoas major [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Psoas_major_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0002358 * OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA * SCTID:244952006 - * UMLS:C0224419 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Psoas_Major] + * UMLS:C0224419 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Psoas_Major ] * Wikipedia:Psoas_major_muscle * http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG * http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG @@ -44,8 +44,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001398.md b/md/UBERON/98/UBERON_0001398.md index 7d3184dcfc..5801e5c7e5 100644 --- a/md/UBERON/98/UBERON_0001398.md +++ b/md/UBERON/98/UBERON_0001398.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001398 * *Label* = brachial artery - * *Definition* = The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_artery] + * *Definition* = The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * brachial part of trunk of subclavian artery - * arteria brachialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brachial_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria brachialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brachial_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -21,7 +21,7 @@ * MESH:A07.231.114.139 * OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA * SCTID:181322008 - * UMLS:C0006087 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brachial_Artery] + * UMLS:C0006087 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brachial_Artery ] * Wikipedia:Brachial_artery * galen:BrachialArtery * http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray525.png @@ -46,8 +46,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Part of the subclavian artery which supplies blood to the forelimb.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001498.md b/md/UBERON/98/UBERON_0001498.md index f500e015be..50a77ec1c6 100644 --- a/md/UBERON/98/UBERON_0001498.md +++ b/md/UBERON/98/UBERON_0001498.md @@ -3,49 +3,49 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001498 * *Label* = muscle of pes - * *Definition* = A muscle organ that is part of a pes [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of a pes [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * autopod of hind limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of hindlimb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of inferior member muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of lower extremity muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hind limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of hindlimb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of inferior member muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of lower extremity muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * autopod of hind limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of hindlimb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of inferior member muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of lower extremity muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hind limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of hindlimb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of inferior member muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of lower extremity muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * foot muscle - * foot muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hind limb distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hindlimb distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * inferior member distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity autopod muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * lower extremity distal free limb segment muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37369] - * muscle organ of autopod of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of autopod of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of hind limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of hindlimb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of inferior member [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of distal free limb segment of lower extremity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hind limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hind limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hindlimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of hindlimb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of inferior member autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of inferior member distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of lower extremity autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of lower extremity distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle organ of terminal segment of free lower limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free lower limb muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * foot muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hind limb distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hindlimb distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * inferior member distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity autopod muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * lower extremity distal free limb segment muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37369 ] + * muscle organ of autopod of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of autopod of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of hind limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of hindlimb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of inferior member [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of distal free limb segment of lower extremity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hind limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hind limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hindlimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of hindlimb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of inferior member autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of inferior member distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of lower extremity autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of lower extremity distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle organ of terminal segment of free lower limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free lower limb muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -65,15 +65,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001598.md b/md/UBERON/98/UBERON_0001598.md index a914d52cd7..eca224ce66 100644 --- a/md/UBERON/98/UBERON_0001598.md +++ b/md/UBERON/98/UBERON_0001598.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001598 * *Label* = temporalis muscle - * *Definition* = The temporal muscle is one of the muscles of mastication. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_muscle] + * *Definition* = The temporal muscle is one of the muscles of mastication. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_muscle ] ## Synonyms - * musculus temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:49006[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculus temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:49006, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * temporal muscle - * temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002390] - * musculus temporalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Temporal_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002390 ] + * musculus temporalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Temporal_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,7 +22,7 @@ * MA:0002390 * MESH:A02.633.567.600.850 * SCTID:181739008 - * UMLS:C0039487 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Temporal_Muscle] + * UMLS:C0039487 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Temporal_Muscle ] * VHOG:0000929 * Wikipedia:Temporal_muscle * http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png @@ -53,8 +53,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001698.md b/md/UBERON/98/UBERON_0001698.md index 7204371da4..74cfce0eaf 100644 --- a/md/UBERON/98/UBERON_0001698.md +++ b/md/UBERON/98/UBERON_0001698.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001698 * *Label* = foramen ovale of skull - * *Definition* = one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_ovale_(skull)] + * *Definition* = one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_ovale_(skull) ] ## Synonyms - * foramen ovale (skull) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53155] - * foramen ovale basis cranii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + galen:ForamenOvaleBasisCranii] - * foramen ovale of chondrocranium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:18711] - * foramen ovale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000169[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53155] + * foramen ovale (skull) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53155 ] + * foramen ovale basis cranii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = galen:ForamenOvaleBasisCranii ] + * foramen ovale of chondrocranium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:18711 ] + * foramen ovale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000169, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53155 ] ## Cross-references @@ -42,8 +42,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = An aperture in the great wing of the sphenoid for vessels and nerves. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001798.md b/md/UBERON/98/UBERON_0001798.md index ee5d3fc3ef..a153693572 100644 --- a/md/UBERON/98/UBERON_0001798.md +++ b/md/UBERON/98/UBERON_0001798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001798 * *Label* = vitreous body - * *Definition* = Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies.[FMA] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58827[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:FMA] + * *Definition* = Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies.[FMA] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58827, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:FMA ] * *Comment* = Note - in many AOs these are exact synonyms, but FMA has a part of link between portion of vitreous humor and this ## Synonyms @@ -17,7 +17,7 @@ * MA:0002462 * MESH:A09.371.943 * SCTID:181170006 - * UMLS:C0042905 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vitreous_Body] + * UMLS:C0042905 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vitreous_Body ] * http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png * ncithesaurus:Vitreous_Body @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001898.md b/md/UBERON/98/UBERON_0001898.md index a48d6e7a5d..ce20353d89 100644 --- a/md/UBERON/98/UBERON_0001898.md +++ b/md/UBERON/98/UBERON_0001898.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001898 * *Label* = hypothalamus - * *Definition* = A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothalamus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothalamus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = Taxon notes: all vertebrates contain a hypothalamus[WP]. ## Synonyms * preoptico-hypothalamic area * preoptico-hypothalamic region - * Hy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_734[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hypothalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Hy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_734, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hypothalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,12 +34,12 @@ * MESH:A08.186.211.577.482 * MIAA:0000112 * NIF_GrossAnatomy:birnlex_734 - * NeuroNames:292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_734] + * NeuroNames:292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_734 ] * OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA * SCTID:264483005 * TAO:0000032 - * UMLS:C0020663 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_734] - * UMLS:C0020663 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hypothalamus] + * UMLS:C0020663 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_734 ] + * UMLS:C0020663 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hypothalamus ] * VHOG:0000179 * Wikipedia:Hypothalamus * XAO:0004070 @@ -75,8 +75,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = For instance, the vertebrate ventral diencephalon generates the hypothalamus which functions as a major endocrine center in cooperation with the hypophysis, the anterior part of the pituitary gland, located just ventral to the hypothalamus. In the amphioxus brain, the presence of a hypothalamus-like structure has been reported associated with the ventrally located Hatschek's pit, the hypothetical hypophysial homologue. It is thus conceivable that a hypothalamus-like structure originally involved in endocrine functions may have already been present before the establishment of vertebrates.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = hypothalamic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0001998.md b/md/UBERON/98/UBERON_0001998.md index 7c58d9571e..22507a193e 100644 --- a/md/UBERON/98/UBERON_0001998.md +++ b/md/UBERON/98/UBERON_0001998.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001998 * *Label* = sternocostal joint - * *Definition* = arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocostal_joints] + * *Definition* = arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocostal_joints ] * *Comment* = AO notes - FMA has FMA:72323 'Costosternal joint', isa Synchondrosis, no other relationships ## Synonyms - * articulatio sternocostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7954] + * articulatio sternocostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7954 ] * costo sternal joint * costosternal joint - * sternochondral joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7954] - * sternocostal synovial joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7954] - * synovial sternocostal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7954] - * articulationes sternocostales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Sternocostal_joints[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sternochondral joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7954 ] + * sternocostal synovial joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7954 ] + * synovial sternocostal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7954 ] + * articulationes sternocostales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Sternocostal_joints, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MA:0001512 * MESH:A02.835.583.790 * SCTID:361860002 - * UMLS:C1305902 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Sternocostal_Joint] + * UMLS:C1305902 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Sternocostal_Joint ] * Wikipedia:Sternocostal_joints * http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png * http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002098.md b/md/UBERON/98/UBERON_0002098.md index 2d3d892ddd..ecf59f0de5 100644 --- a/md/UBERON/98/UBERON_0002098.md +++ b/md/UBERON/98/UBERON_0002098.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002098 * *Label* = apex of heart - * *Definition* = The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Apex_of_the_heart] + * *Definition* = The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Apex_of_the_heart ] * *Comment* = Note that FMA also has terms for the apical zone ## Synonyms - * apex cordis [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * cardiac apex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7164] + * apex cordis [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * cardiac apex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7164 ] * heart apex ## Cross-references @@ -17,7 +17,7 @@ * FMA:7164 * MA:0000488 * SCTID:362009004 - * UMLS:C0225811 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Apex_of_the_Heart] + * UMLS:C0225811 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Apex_of_the_Heart ] * Wikipedia:Apex_of_the_heart * http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png * http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png @@ -40,8 +40,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002198.md b/md/UBERON/98/UBERON_0002198.md index fe5e312313..cc06cbdff9 100644 --- a/md/UBERON/98/UBERON_0002198.md +++ b/md/UBERON/98/UBERON_0002198.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002198 * *Label* = neurohypophysis - * *Definition* = comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Neurohypophysis] + * *Definition* = comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Neurohypophysis ] * *Comment* = Editor note - request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: "The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon" [http://syllabus.med.unc.edu/courseware/embryo_images/] ## Synonyms - * infundibular process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628] - * lobus nervosus neurohypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus posterior (glandula pituitaria) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus posterior hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * neural lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628] - * neural lobe of pituitary [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1586] - * neural lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628] + * infundibular process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628 ] + * lobus nervosus neurohypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus posterior (glandula pituitaria) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus posterior hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * neural lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628 ] + * neural lobe of pituitary [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1586 ] + * neural lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628 ] * neurohypophysis * pituitary gland, posterior lobe * posterior lobe of pituitary - * posterior lobe of pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74628] + * posterior lobe of pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74628 ] * posterior pituitary - * NHP [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1586[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * lobus nervosus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:401[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lobus posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:401[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pituitary gland neural lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:NL] - * pituitary gland, neural lobe [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:401] - * posterior lobe of hypophysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:401] - * posterior pituitary gland [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000937] + * NHP [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1586, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * lobus nervosus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:401, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lobus posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:401, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pituitary gland neural lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:NL ] + * pituitary gland, neural lobe [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:401 ] + * posterior lobe of hypophysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:401 ] + * posterior pituitary gland [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000937 ] ## Cross-references @@ -45,12 +45,12 @@ * MA:0000178 * MESH:A06.407.747.734 * NIF_GrossAnatomy:birnlex_1586 - * NeuroNames:401 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1586] + * NeuroNames:401 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1586 ] * SCTID:245527006 * TAO:0001271 - * UMLS:C0032009 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1586] - * UMLS:C0032009 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland] - * UMLS:C1280368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1586] + * UMLS:C0032009 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1586 ] + * UMLS:C0032009 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland ] + * UMLS:C1280368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1586 ] * VHOG:0000142 * Wikipedia:Neurohypophysis * ZFA:0001271 @@ -88,8 +88,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The infundibular part of the pituitary gland consisting of two regions.[AAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It (the hypophysis) develops embryonically in all vertebrates from two ectodermal evaginations that meet and unite. An infundibulum grows ventrally from the diencephalon of the brain, and Rathke's pouch extends dorsally from the roof of the developing mouth, or stomodaeum. The infundibulum remains connected to the floor of the diencephalon, which becomes the hypothalamus, and gives rise to the part of the gland known as the neurohypophysis. (...) Rathke's pouch loses its connection with the stomodaeum in most adult vertebrates and gives rise to the rest of the gland, the adenohypophysis. (...) A well-developed hypophyseal system with functional connections to the hypothalamus is unique to craniates.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002298.md b/md/UBERON/98/UBERON_0002298.md index 05e9d59450..04223232d6 100644 --- a/md/UBERON/98/UBERON_0002298.md +++ b/md/UBERON/98/UBERON_0002298.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002298 * *Label* = brainstem - * *Definition* = Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0471888893[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0005277[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brainstem[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001707] + * *Definition* = Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0471888893, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0005277, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brainstem, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001707 ] * *Comment* = 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). ## Synonyms - * brain stem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:BS] - * truncus encephali [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Brainstem[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * accessory medullary lamina of pallidum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236] - * lamella pallidi incompleta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris accessoria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina medullaris incompleta pallidi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lamina pallidi incompleta [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:236[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * truncus encephalicus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000146[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * brain stem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:BS ] + * truncus encephali [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Brainstem, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * accessory medullary lamina of pallidum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236 ] + * lamella pallidi incompleta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris accessoria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina medullaris incompleta pallidi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lamina pallidi incompleta [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:236, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * truncus encephalicus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000146, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,11 +30,11 @@ * MA:0000169 * MESH:A08.186.211.132 * NIF_GrossAnatomy:birnlex_1565 - * NeuroNames:236 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1565] + * NeuroNames:236 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1565 ] * SCTID:180925009 * TAO:0002156 - * UMLS:C0006121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1565] - * UMLS:C0006121 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Brain_Stem] + * UMLS:C0006121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1565 ] + * UMLS:C0006121 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Brain_Stem ] * VHOG:0001457 * Wikipedia:Brainstem * ZFA:0001707 @@ -70,8 +70,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002398.md b/md/UBERON/98/UBERON_0002398.md index d1d8b253db..9388aa4f78 100644 --- a/md/UBERON/98/UBERON_0002398.md +++ b/md/UBERON/98/UBERON_0002398.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002398 * *Label* = manus - * *Definition* = distal segment of the fore limb, including carpal region, metacarpal region and digits. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hand[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Manus_(anatomy)] + * *Definition* = distal segment of the fore limb, including carpal region, metacarpal region and digits. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hand, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Manus_(anatomy) ] * *Comment* = Usage notes: like all limb segments, this class encompasses both the unformed hand region of the embryo to the fully formed structure complete with skeleton ## Synonyms - * forelimb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * forelimb autopodium [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000037] - * hand region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000728] + * forelimb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * forelimb autopodium [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000037 ] + * hand region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000728 ] * terminal segment of free upper limb - * fore foot [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * fore paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17428[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * fore-paw [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17428[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * forefoot [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * fore foot [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * fore paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17428, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * fore-paw [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17428, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * forefoot [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] * forefoot of quadruped ## Cross-references @@ -33,7 +33,7 @@ * NIF_GrossAnatomy:nlx_anat_20090603 * OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA * SCTID:302539009 - * UMLS:C0018563 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hand] + * UMLS:C0018563 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hand ] * VHOG:0000344 * Wikipedia:Manus_(anatomy) * galen:Hand @@ -53,7 +53,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [autopod region](../../UBERON/70/UBERON_0002470.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) ## Other Logical Axioms @@ -62,8 +62,9 @@ * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = manual * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002498.md b/md/UBERON/98/UBERON_0002498.md index fa834c3cb9..cab88e853f 100644 --- a/md/UBERON/98/UBERON_0002498.md +++ b/md/UBERON/98/UBERON_0002498.md @@ -3,22 +3,22 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002498 * *Label* = deltopectoral crest - * *Definition* = The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_tuberosity] + * *Definition* = The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_tuberosity ] ## Synonyms - * crista ventralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000736] - * deltoid crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004353] - * deltoid eminence [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004353] - * deltoid impression [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004353] - * deltoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0004353] - * deltoid tuberosity [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23418] - * deltoid tuberosity of humerus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23418] + * crista ventralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000736 ] + * deltoid crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004353 ] + * deltoid eminence [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004353 ] + * deltoid impression [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004353 ] + * deltoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0004353 ] + * deltoid tuberosity [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23418 ] + * deltoid tuberosity of humerus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23418 ] * tuberositas deltoidea (corpus humeri) - * tuberositas deltoidea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23418[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tuberositas deltoidea humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deltoid_tuberosity[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * crista ventralis humeri [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000736] - * deltoid crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000736] + * tuberositas deltoidea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23418, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tuberositas deltoidea humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deltoid_tuberosity, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * crista ventralis humeri [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000736 ] + * deltoid crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000736 ] ## Cross-references @@ -49,8 +49,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002598.md b/md/UBERON/98/UBERON_0002598.md index 59f09b1356..cf7bea6e85 100644 --- a/md/UBERON/98/UBERON_0002598.md +++ b/md/UBERON/98/UBERON_0002598.md @@ -6,19 +6,19 @@ ## Synonyms - * sulcus subcentralis medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1121] - * pcs [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1121[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * precentral sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:pcs] - * sulcus paracentralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:70[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * sulcus subcentralis medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1121 ] + * pcs [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1121, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * precentral sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:pcs ] + * sulcus paracentralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:70, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:pcs * FMA:83762 * NIF_GrossAnatomy:birnlex_1121 - * NeuroNames:70 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1121] + * NeuroNames:70 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1121 ] * SCTID:369228002 - * UMLS:C0228204 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1121] + * UMLS:C0228204 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1121 ] ## Subsets @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002698.md b/md/UBERON/98/UBERON_0002698.md index e6c4f270a3..6c1a24ba24 100644 --- a/md/UBERON/98/UBERON_0002698.md +++ b/md/UBERON/98/UBERON_0002698.md @@ -6,22 +6,22 @@ ## Synonyms - * incisura parieto-occipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1436] - * incisura praeoccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1436] - * incisura preoccipitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1436] - * occipital notch [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83739] - * preoccipital incisura [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83739] - * preoccipital incisure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83739] - * pon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1436[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * incisura parieto-occipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1436 ] + * incisura praeoccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1436 ] + * incisura preoccipitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1436 ] + * occipital notch [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83739 ] + * preoccipital incisura [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83739 ] + * preoccipital incisure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83739 ] + * pon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1436, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references * BAMS:pon * FMA:83739 * NIF_GrossAnatomy:birnlex_1436 - * NeuroNames:54 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1436] + * NeuroNames:54 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1436 ] * SCTID:369229005 - * UMLS:C0228192 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1436] + * UMLS:C0228192 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1436 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002798.md b/md/UBERON/98/UBERON_0002798.md index 5c98ff329d..2189b47a89 100644 --- a/md/UBERON/98/UBERON_0002798.md +++ b/md/UBERON/98/UBERON_0002798.md @@ -3,30 +3,30 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002798 * *Label* = spinothalamic tract of pons - * *Definition* = Part of spinothalamic tract that is in the pontine tegmentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1719] + * *Definition* = Part of spinothalamic tract that is in the pontine tegmentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1719 ] ## Synonyms - * pons of varolius spinothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons of varolius spinothalamic tract of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons spinothalamic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pons spinothalamic tract of medulla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinothalamic tract of medulla of pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinothalamic tract of medulla of pons of varolius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * spinothalamic tract of pons of varolius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Spinotectal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:stp] - * spinotectal pathway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:stp] - * spinothalamic tract of the pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:611] - * tractus spinothalamicus (pontis) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:611[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pons of varolius spinothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons of varolius spinothalamic tract of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons spinothalamic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pons spinothalamic tract of medulla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinothalamic tract of medulla of pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinothalamic tract of medulla of pons of varolius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * spinothalamic tract of pons of varolius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Spinotectal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:stp ] + * spinotectal pathway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:stp ] + * spinothalamic tract of the pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:611 ] + * tractus spinothalamicus (pontis) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:611, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:stp * FMA:72504 * NIF_GrossAnatomy:birnlex_1719 - * NeuroNames:611 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1719] + * NeuroNames:611 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1719 ] * SCTID:369026006 - * UMLS:C0152380 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1719] + * UMLS:C0152380 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1719 ] ## Subsets @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002898.md b/md/UBERON/98/UBERON_0002898.md index 77a5520a49..d0af80e5fd 100644 --- a/md/UBERON/98/UBERON_0002898.md +++ b/md/UBERON/98/UBERON_0002898.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002898 * *Label* = chiasmatic cistern - * *Definition* = In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chiasmatic_cistern] + * *Definition* = In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chiasmatic_cistern ] ## Synonyms - * cisterna chiasmatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4003] - * cisterna chiasmatis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4003] - * ccis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4003[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * cisterna chiasmatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chiasmatic_cistern[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cisterna chiasmatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4003 ] + * cisterna chiasmatis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4003 ] + * ccis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4003, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * cisterna chiasmatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chiasmatic_cistern, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * EMAPA:25081 * FMA:74515 * NIF_GrossAnatomy:birnlex_4003 - * NeuroNames:30 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4003] + * NeuroNames:30 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4003 ] * SCTID:47947006 - * UMLS:C0228152 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4003] - * UMLS:C0228152 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Chiasmatic_Cistern] + * UMLS:C0228152 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4003 ] + * UMLS:C0228152 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Chiasmatic_Cistern ] * Wikipedia:Chiasmatic_cistern * ncithesaurus:Chiasmatic_Cistern @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0002998.md b/md/UBERON/98/UBERON_0002998.md index 02cb9f0688..732311a8e1 100644 --- a/md/UBERON/98/UBERON_0002998.md +++ b/md/UBERON/98/UBERON_0002998.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002998 * *Label* = inferior frontal gyrus - * *Definition* = The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_frontal_gyrus] + * *Definition* = The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_frontal_gyrus ] * *Comment* = ncit has two classes, but these are exact synonyms in FMA ## Synonyms - * inferior frontal convolution [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:61860] - * gyrus F3 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis inferior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Inferior_frontal_gyrus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus frontalis tertius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * regio subfrontalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:85[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * inferior frontal convolution [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:61860 ] + * gyrus F3 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis inferior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Inferior_frontal_gyrus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus frontalis tertius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * regio subfrontalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:85, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,10 +20,10 @@ * BTO:0004835 * FMA:61860 * NIF_GrossAnatomy:birnlex_873 - * NeuroNames:85 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_873] + * NeuroNames:85 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_873 ] * SCTID:362333004 - * UMLS:C0152298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_873] - * UMLS:C0152298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Inferior_Frontal_Convolution] + * UMLS:C0152298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_873 ] + * UMLS:C0152298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Inferior_Frontal_Convolution ] * Wikipedia:Inferior_frontal_gyrus * http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png * ncithesaurus:Inferior_Frontal_Convolution @@ -48,8 +48,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003098.md b/md/UBERON/98/UBERON_0003098.md index e9a4078ce8..f511271773 100644 --- a/md/UBERON/98/UBERON_0003098.md +++ b/md/UBERON/98/UBERON_0003098.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003098 * *Label* = optic stalk - * *Definition* = The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_stalk] + * *Definition* = The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_stalk ] ## Synonyms - * pedunculus opticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Optic_stalk[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * pedunculus opticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Optic_stalk, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -17,7 +17,7 @@ * EMAPA:16678 * SCTID:308788004 * TAO:0000137 - * UMLS:C0231107 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Optic_Stalk] + * UMLS:C0231107 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Optic_Stalk ] * VHOG:0000223 * Wikipedia:Optic_stalk * XAO:0000475 @@ -49,8 +49,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The evagination from the neural tube of the developing embryo which develops the optic cup at its extremity; the stalk persists as the optic nerve. [TFD][VHOG] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = (...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003198.md b/md/UBERON/98/UBERON_0003198.md index 0f8fa9a99d..3b5bde60cc 100644 --- a/md/UBERON/98/UBERON_0003198.md +++ b/md/UBERON/98/UBERON_0003198.md @@ -27,9 +27,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = FBbt:00004850 * *[consider](../../er/oboInOwl#consider.md)* = HAO:0000091 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003198 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_0003298.md b/md/UBERON/98/UBERON_0003298.md index 6c622b6e27..ccce2cf57a 100644 --- a/md/UBERON/98/UBERON_0003298.md +++ b/md/UBERON/98/UBERON_0003298.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003298 * *Label* = roof plate of neural tube - * *Definition* = A roof plate that is part of a neural tube [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a neural tube [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * neural tube roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * neural tube roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000303] - * roof plate neural tube region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001436] - * roofplate of neural tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * neural tube roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * neural tube roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000303 ] + * roof plate neural tube region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001436 ] + * roofplate of neural tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [neural tube](../../UBERON/49/UBERON_0001049.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -45,8 +45,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003398.md b/md/UBERON/98/UBERON_0003398.md index 418c8ae633..b2144c5626 100644 --- a/md/UBERON/98/UBERON_0003398.md +++ b/md/UBERON/98/UBERON_0003398.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003398 * *Label* = mesentery of jejunum - * *Definition* = A mesentery that is part of a jejunum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mesentery that is part of a jejunum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms * jejunal mesentery * jejunum mesentery - * mesojejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] + * mesojejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesentery](../../UBERON/95/UBERON_0002095.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003498.md b/md/UBERON/98/UBERON_0003498.md index 1415302e08..88132439a4 100644 --- a/md/UBERON/98/UBERON_0003498.md +++ b/md/UBERON/98/UBERON_0003498.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003498 * *Label* = heart blood vessel - * *Definition* = A blood vessel that is part of a heart [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a heart [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of heart [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of heart [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003598.md b/md/UBERON/98/UBERON_0003598.md index edec83967e..022cddac6f 100644 --- a/md/UBERON/98/UBERON_0003598.md +++ b/md/UBERON/98/UBERON_0003598.md @@ -3,94 +3,94 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003598 * *Label* = manus connective tissue - * *Definition* = A portion of connective tissue that is part of a hand [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a hand [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * arm autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * autopod of proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * brachial region distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of arm textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of brachial region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * distal free limb segment of proximal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000620] - * hand portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * hand textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb autopod connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb autopod portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb autopod textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * proximal segment of free upper limb distal free limb segment textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * terminal segment of free upper limb textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of arm distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of autopod of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of brachial region distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of brachial region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of distal free limb segment of proximal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of hand [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb autopod [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of proximal segment of free upper limb distal free limb segment [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of terminal segment of free upper limb [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * arm autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * autopod of proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * brachial region distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of arm textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of brachial region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * distal free limb segment of proximal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000620 ] + * hand portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * hand textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb autopod connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb autopod portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb autopod textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * proximal segment of free upper limb distal free limb segment textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * terminal segment of free upper limb textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of arm distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of autopod of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of brachial region distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of brachial region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of distal free limb segment of proximal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of hand [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb autopod [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of proximal segment of free upper limb distal free limb segment [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of terminal segment of free upper limb [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -106,15 +106,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [manus](../../UBERON/98/UBERON_0002398.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003698.md b/md/UBERON/98/UBERON_0003698.md index 6e4bfb5e1d..33a54cb294 100644 --- a/md/UBERON/98/UBERON_0003698.md +++ b/md/UBERON/98/UBERON_0003698.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003698 * *Label* = subtalar joint - * *Definition* = A joint of the pes that connects the talus and the calcaneus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subtalar_joint[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A joint of the pes that connects the talus and the calcaneus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subtalar_joint, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * articulatio subtalaris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35198[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * articulatio talocalcanea [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35198[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * subtalar joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:35198] - * talocalcaneal articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subtalar_joint] - * talocalcaneal joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:260] + * articulatio subtalaris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35198, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * articulatio talocalcanea [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35198, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * subtalar joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:35198 ] + * talocalcaneal articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subtalar_joint ] + * talocalcaneal joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:260 ] ## Cross-references @@ -19,7 +19,7 @@ * GAID:260 * MESH:A02.835.583.378.831.780 * SCTID:182213007 - * UMLS:C0038593 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subtalar_Joint] + * UMLS:C0038593 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subtalar_Joint ] * Wikipedia:Subtalar_joint * http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG * ncithesaurus:Subtalar_Joint @@ -36,15 +36,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [connects](../../ts/core#connects.md) some [calcaneus](../../UBERON/50/UBERON_0001450.md) and [connects](../../ts/core#connects.md) some [talus](../../UBERON/95/UBERON_0002395.md) and [synovial joint](../../UBERON/17/UBERON_0002217.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003898.md b/md/UBERON/98/UBERON_0003898.md index 9f593020f7..b9951acb0d 100644 --- a/md/UBERON/98/UBERON_0003898.md +++ b/md/UBERON/98/UBERON_0003898.md @@ -7,13 +7,13 @@ ## Synonyms - * skeletal muscle of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of torso [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * skeletal muscle tissue of trunk [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * torso skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * trunk skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * skeletal muscle of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of torso [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * skeletal muscle tissue of trunk [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * torso skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * trunk skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0003998.md b/md/UBERON/98/UBERON_0003998.md index bb7e179629..f56faac13c 100644 --- a/md/UBERON/98/UBERON_0003998.md +++ b/md/UBERON/98/UBERON_0003998.md @@ -3,23 +3,23 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003998 * *Label* = hyoid bone lesser horn - * *Definition* = shorter and more medial of the paired processes on either side of the hyoid bone[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009914[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_cornu] + * *Definition* = shorter and more medial of the paired processes on either side of the hyoid bone[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009914, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_cornu ] ## Synonyms - * cornu minus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499] - * cornu minus ossis hyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * lesser cornu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499] + * cornu minus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499 ] + * cornu minus ossis hyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * lesser cornu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499 ] * lesser cornu of hyoid - * lesser cornua [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.biology-online.org/dictionary/Lesser_cornua] - * lesser horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499] - * lesser horn of hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499] - * lesser horn of hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:59499] + * lesser cornua [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.biology-online.org/dictionary/Lesser_cornua ] + * lesser horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499 ] + * lesser horn of hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499 ] + * lesser horn of hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:59499 ] * lesser horn of the hyoid - * anterior horn of hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * ceratohyal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] - * hyoid bone lesser cornu [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002960] - * hyoid bone lower horn [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002960] + * anterior horn of hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * ceratohyal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] + * hyoid bone lesser cornu [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002960 ] + * hyoid bone lower horn [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002960 ] ## Cross-references @@ -50,8 +50,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The lesser cornua (or lesser horns) are two small, conical eminences, attached by their bases to the angles of junction between the body and greater cornua of the hyoid bone. They are connected to the body of the bone by fibrous tissue, and occasionally to the greater cornua by distinct diarthrodial joints, which usually persist throughout life, but occasionally become ankylosed. The lesser cornua are situated in the line of the transverse ridge on the body and appear to be morphological continuations of it. The apex of each cornu gives attachment to the stylohyoid ligament; the Chondroglossus rises from the medial side of the base. The lesser cornua are derived from the 2nd pharyngeal arches[Wikipedia:Lesser_cornu]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004098.md b/md/UBERON/98/UBERON_0004098.md index 6db30a2bff..b68b43e923 100644 --- a/md/UBERON/98/UBERON_0004098.md +++ b/md/UBERON/98/UBERON_0004098.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004098 * *Label* = tibial plateaux - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003832] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003832 ] ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004198.md b/md/UBERON/98/UBERON_0004198.md index bfff760fdc..1571ec08bf 100644 --- a/md/UBERON/98/UBERON_0004198.md +++ b/md/UBERON/98/UBERON_0004198.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004198 * *Label* = comma-shaped body - * *Definition* = The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072049] + * *Definition* = The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072049 ] ## Synonyms - * CSB [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] + * CSB [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004398.md b/md/UBERON/98/UBERON_0004398.md index 9369fce4b3..50328561d1 100644 --- a/md/UBERON/98/UBERON_0004398.md +++ b/md/UBERON/98/UBERON_0004398.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004398 * *Label* = epiphysis of fourth metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone of digit 4 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fourth metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86314] + * fourth metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86314 ] * metatarsal 4 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 4](../../UBERON/53/UBERON_0003653.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004498.md b/md/UBERON/98/UBERON_0004498.md index 0edd9a0abb..5d889e6c97 100644 --- a/md/UBERON/98/UBERON_0004498.md +++ b/md/UBERON/98/UBERON_0004498.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004498 * *Label* = skeletal muscle tissue of quadriceps femoris - * *Definition* = A portion of skeletal muscle tissue that is part of a quadriceps femoris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a quadriceps femoris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [quadriceps femoris](../../UBERON/77/UBERON_0001377.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004698.md b/md/UBERON/98/UBERON_0004698.md index f3982db672..0c17e006fe 100644 --- a/md/UBERON/98/UBERON_0004698.md +++ b/md/UBERON/98/UBERON_0004698.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004698 * *Label* = vena cava endothelium - * *Definition* = An endothelium that is part of a vena cava [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a vena cava [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * MA:0000713 - * UMLS:C1710623 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vena_Cava_Endothelium] + * UMLS:C1710623 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vena_Cava_Endothelium ] * ncithesaurus:Vena_Cava_Endothelium ## Subsets @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vena cava](../../UBERON/87/UBERON_0004087.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004798.md b/md/UBERON/98/UBERON_0004798.md index 30191ec2b4..86669c63bf 100644 --- a/md/UBERON/98/UBERON_0004798.md +++ b/md/UBERON/98/UBERON_0004798.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004798 * *Label* = respiratory system basal lamina - * *Definition* = A basal lamina that is part of a respiratory system [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basal lamina that is part of a respiratory system [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * apparatus respiratorius basal lamina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * apparatus respiratorius basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of connective tissue of apparatus respiratorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of connective tissue of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * basal lamina of respiratory system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * respiratory system basal lamina of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * apparatus respiratorius basal lamina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * apparatus respiratorius basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of connective tissue of apparatus respiratorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of connective tissue of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * basal lamina of respiratory system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * respiratory system basal lamina of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basal lamina of epithelium](../../UBERON/82/UBERON_0000482.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory system](../../UBERON/04/UBERON_0001004.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0004898.md b/md/UBERON/98/UBERON_0004898.md index 55896bd017..296ff1b446 100644 --- a/md/UBERON/98/UBERON_0004898.md +++ b/md/UBERON/98/UBERON_0004898.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004898 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_0004998.md b/md/UBERON/98/UBERON_0004998.md index 341bce8758..ed1f56e6e2 100644 --- a/md/UBERON/98/UBERON_0004998.md +++ b/md/UBERON/98/UBERON_0004998.md @@ -3,34 +3,34 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004998 * *Label* = mucosa of pylorus - * *Definition* = A mucosa that is part of a pylorus [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a pylorus [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * mucosa of organ of pyloric part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of pylorus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of pyloric part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pyloric part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of pylorus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pyloric part of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of pylorus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach pyloric region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric part of stomach mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric part of stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric part of stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pyloric part of stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pylorus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pylorus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pylorus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * pylorus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric region mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric region mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric region mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach pyloric region organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * antropyloric mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002984] + * mucosa of organ of pyloric part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of pylorus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of pyloric part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pyloric part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of pylorus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pyloric part of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of pylorus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach pyloric region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric part of stomach mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric part of stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric part of stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pyloric part of stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pylorus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pylorus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pylorus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * pylorus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric region mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric region mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric region mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach pyloric region organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * antropyloric mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002984 ] ## Cross-references @@ -49,15 +49,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pylorus](../../UBERON/66/UBERON_0001166.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005198.md b/md/UBERON/98/UBERON_0005198.md index 5434db3602..220e277c5b 100644 --- a/md/UBERON/98/UBERON_0005198.md +++ b/md/UBERON/98/UBERON_0005198.md @@ -24,9 +24,10 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005198 * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_0005298.md b/md/UBERON/98/UBERON_0005298.md index 6444b0a3fd..c65d72e647 100644 --- a/md/UBERON/98/UBERON_0005298.md +++ b/md/UBERON/98/UBERON_0005298.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005298 * *Label* = skin of clitoris - * *Definition* = A zone of skin that is part of a clitoris [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A zone of skin that is part of a clitoris [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [clitoris](../../UBERON/11/UBERON_0002411.md) and [zone of skin](../../UBERON/14/UBERON_0000014.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005398.md b/md/UBERON/98/UBERON_0005398.md index e7c556045e..877db3fb09 100644 --- a/md/UBERON/98/UBERON_0005398.md +++ b/md/UBERON/98/UBERON_0005398.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005398 * *Label* = female reproductive gland - * *Definition* = A sex gland that is part of a female reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sex gland that is part of a female reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female reproductive system](../../UBERON/74/UBERON_0000474.md) and [sex gland](../../UBERON/37/UBERON_0003937.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005498.md b/md/UBERON/98/UBERON_0005498.md index 714aac77f9..4228611da0 100644 --- a/md/UBERON/98/UBERON_0005498.md +++ b/md/UBERON/98/UBERON_0005498.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005498 * *Label* = primitive heart tube - * *Definition* = Multi-tissue structure that arises from the heart rudiment and will become the heart tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000149] + * *Definition* = Multi-tissue structure that arises from the heart rudiment and will become the heart tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000149 ] ## Synonyms - * primitive heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16215] - * early primitive heart tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16208] + * primitive heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16215 ] + * early primitive heart tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16208 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005598.md b/md/UBERON/98/UBERON_0005598.md index 8ca0b97214..f4d374d6a0 100644 --- a/md/UBERON/98/UBERON_0005598.md +++ b/md/UBERON/98/UBERON_0005598.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005598 * *Label* = trunk somite - * *Definition* = A somite that is part of a trunk. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A somite that is part of a trunk. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) and [somite](../../UBERON/29/UBERON_0002329.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005698.md b/md/UBERON/98/UBERON_0005698.md index 40bb17f4a5..e30627be12 100644 --- a/md/UBERON/98/UBERON_0005698.md +++ b/md/UBERON/98/UBERON_0005698.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005698 * *Label* = pedal digit 4 mesenchyme - * *Definition* = Mesenchyme that is part of a pedal digit 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pedal digit 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 4 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 4 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 4](../../UBERON/34/UBERON_0003634.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005798.md b/md/UBERON/98/UBERON_0005798.md index e32a094fb8..1fb3991b23 100644 --- a/md/UBERON/98/UBERON_0005798.md +++ b/md/UBERON/98/UBERON_0005798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005798 * *Label* = bicornuate uterus - * *Definition* = the bicornate uterus is y-shaped but has no internal partition (some ungulates, whales) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Bicornuate_uterus[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Uterus#Forms_in_mammals[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.shsu.edu/~bio_mlt/Chap14.html] + * *Definition* = the bicornate uterus is y-shaped but has no internal partition (some ungulates, whales) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Bicornuate_uterus, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Uterus#Forms_in_mammals, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.shsu.edu/~bio_mlt/Chap14.html ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0005998.md b/md/UBERON/98/UBERON_0005998.md index 155e9e0b03..6c2f99f9f6 100644 --- a/md/UBERON/98/UBERON_0005998.md +++ b/md/UBERON/98/UBERON_0005998.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005998 * *Label* = tricuspid valve cusp - * *Definition* = the three fibrous triangular components and associated flaps of the tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0010622] + * *Definition* = the three fibrous triangular components and associated flaps of the tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0010622 ] * *Comment* = Editor notes: check whether we need to separate cusp/leaflet/valve ## Synonyms - * cuspis septalis valvae atrioventricularis dextrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7240[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * septal cusp of right atrioventricular valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7240] - * septal cusp of tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7240] - * septal leaflet of right-sided tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BGEE:ANiknejad] - * septal leaflet of tricuspid valve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7240] - * septal tricuspid leaflet [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7240] + * cuspis septalis valvae atrioventricularis dextrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7240, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * septal cusp of right atrioventricular valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7240 ] + * septal cusp of tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7240 ] + * septal leaflet of right-sided tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BGEE:ANiknejad ] + * septal leaflet of tricuspid valve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7240 ] + * septal tricuspid leaflet [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7240 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [cusp of cardiac valve](../../UBERON/09/UBERON_0006009.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tricuspid valve](../../UBERON/34/UBERON_0002134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006098.md b/md/UBERON/98/UBERON_0006098.md index 55b9067330..efe270e1af 100644 --- a/md/UBERON/98/UBERON_0006098.md +++ b/md/UBERON/98/UBERON_0006098.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006098 * *Label* = basal nuclear complex - * *Definition* = The deep nuclei of telencephalic origin found in the basal region of the forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1629] + * *Definition* = The deep nuclei of telencephalic origin found in the basal region of the forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1629 ] ## Synonyms - * basal nuclei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1629] - * basal nuclei of the forebrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1629] - * basal ganglia (anatomic) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224] - * basal ganglia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1629[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] - * corpus striatum (Savel'ev) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ganglia basales [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:224[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * basal nuclei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1629 ] + * basal nuclei of the forebrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1629 ] + * basal ganglia (anatomic) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224 ] + * basal ganglia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1629, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] + * corpus striatum (Savel'ev) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ganglia basales [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:224, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -20,8 +20,8 @@ * BAMS:BNC * EV:0100182 * NIF_GrossAnatomy:birnlex_1629 - * NeuroNames:224 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1629] - * UMLS:C0004781 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1629] + * NeuroNames:224 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1629 ] + * UMLS:C0004781 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1629 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006198.md b/md/UBERON/98/UBERON_0006198.md index 85689b79c3..21ddce56e0 100644 --- a/md/UBERON/98/UBERON_0006198.md +++ b/md/UBERON/98/UBERON_0006198.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006198 * *Label* = dorsal intercostal artery - * *Definition* = The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Highest_intercostal_artery] + * *Definition* = The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Highest_intercostal_artery ] * *Comment* = classes unified on basis of spatial anatomy ontology synonyms ## Synonyms - * superior intercostal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76998[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Highest_intercostal_artery] - * supreme intercostal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76998[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Highest_intercostal_artery] - * arteria intercostalis suprema [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Highest_intercostal_artery[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * dorsal branch of superior intercostal artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery] + * superior intercostal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76998, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Highest_intercostal_artery ] + * supreme intercostal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76998, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Highest_intercostal_artery ] + * arteria intercostalis suprema [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Highest_intercostal_artery, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * dorsal branch of superior intercostal artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006298.md b/md/UBERON/98/UBERON_0006298.md index 32850f1893..fa33e0a1ea 100644 --- a/md/UBERON/98/UBERON_0006298.md +++ b/md/UBERON/98/UBERON_0006298.md @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006598.md b/md/UBERON/98/UBERON_0006598.md index 98fcca36bd..12a91203da 100644 --- a/md/UBERON/98/UBERON_0006598.md +++ b/md/UBERON/98/UBERON_0006598.md @@ -6,7 +6,7 @@ ## Synonyms - * presumptive structures [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001116] + * presumptive structures [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001116 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006698.md b/md/UBERON/98/UBERON_0006698.md index 6aefa65000..262f28f3ac 100644 --- a/md/UBERON/98/UBERON_0006698.md +++ b/md/UBERON/98/UBERON_0006698.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006698 * *Label* = mammillotegmental axonal tract - * *Definition* = The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0061376] + * *Definition* = The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0061376 ] ## Synonyms - * Gudden tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62058] - * mammillotegmental fasciculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62058] - * mammillotegmental tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62058] - * mammillotegmental tract of hypothalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1497] - * von Gudden's tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62058] - * mtg [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1497[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * fasciculus mamillotegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * mammillo-tegmental tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423] - * mammillotegmental tract (Gudden) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423] - * medial tegmental tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:mtg] - * tractus hypothalamicotegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus hypothalamotegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus mamillo-tegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus mammillotegmentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:423[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Gudden tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62058 ] + * mammillotegmental fasciculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62058 ] + * mammillotegmental tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62058 ] + * mammillotegmental tract of hypothalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1497 ] + * von Gudden's tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62058 ] + * mtg [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1497, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * fasciculus mamillotegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * mammillo-tegmental tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423 ] + * mammillotegmental tract (Gudden) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423 ] + * medial tegmental tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:mtg ] + * tractus hypothalamicotegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus hypothalamotegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus mamillo-tegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus mammillotegmentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:423, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:mtg * FMA:62058 * NIF_GrossAnatomy:birnlex_1497 - * NeuroNames:423 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1497] + * NeuroNames:423 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1497 ] * SCTID:369140005 - * UMLS:C0228376 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1497] + * UMLS:C0228376 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1497 ] ## Subsets @@ -51,8 +51,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0002725 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0006798.md b/md/UBERON/98/UBERON_0006798.md index 03f8ba184f..2f4524bc72 100644 --- a/md/UBERON/98/UBERON_0006798.md +++ b/md/UBERON/98/UBERON_0006798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006798 * *Label* = efferent nerve - * *Definition* = A group of neurons that provides a nervous signal to a tissue. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB] + * *Definition* = A group of neurons that provides a nervous signal to a tissue. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0007098.md b/md/UBERON/98/UBERON_0007098.md index 7b3903d232..5db54ee7cc 100644 --- a/md/UBERON/98/UBERON_0007098.md +++ b/md/UBERON/98/UBERON_0007098.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007098 * *Label* = mandibular neural crest - * *Definition* = Cranial neural crest that migrates into the mandibular arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007064] + * *Definition* = Cranial neural crest that migrates into the mandibular arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007064 ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0007198.md b/md/UBERON/98/UBERON_0007198.md index f365d02892..66655aa247 100644 --- a/md/UBERON/98/UBERON_0007198.md +++ b/md/UBERON/98/UBERON_0007198.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007198 * *Label* = hermaphrodite anatomical structure - * *Definition* = An anatomical structure present only in hermaphrodites. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + JB:DEF] + * *Definition* = An anatomical structure present only in hermaphrodites. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = JB:DEF ] ## Synonyms - * hermaphrodite-specific [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + WBbt:0005758] + * hermaphrodite-specific [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = WBbt:0005758 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical structure](../../UBERON/61/UBERON_0000061.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hermaphroditic organism](../../UBERON/97/UBERON_0007197.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = AEO:0000177 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0007298.md b/md/UBERON/98/UBERON_0007298.md index 3442a063ce..acea15d71e 100644 --- a/md/UBERON/98/UBERON_0007298.md +++ b/md/UBERON/98/UBERON_0007298.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007298 * *Label* = pronephric proximal convoluted tubule - * *Definition* = A proximal convoluted tubule that is part of a pronephros. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A proximal convoluted tubule that is part of a pronephros. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [pronephros](../../UBERON/20/UBERON_0002120.md) and [proximal convoluted tubule](../../UBERON/87/UBERON_0001287.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0007798.md b/md/UBERON/98/UBERON_0007798.md index c667a63e39..ed988fb112 100644 --- a/md/UBERON/98/UBERON_0007798.md +++ b/md/UBERON/98/UBERON_0007798.md @@ -7,7 +7,7 @@ ## Synonyms - * Gefaesssystem@ge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001085] + * Gefaesssystem@ge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001085 ] ## Cross-references @@ -15,7 +15,7 @@ * CALOHA:TS-2053 * EHDAA2:0004520 * MA:0002718 - * UMLS:C0489903 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vascular_System] + * UMLS:C0489903 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vascular_System ] * ncithesaurus:Vascular_System ## Subsets @@ -35,8 +35,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The cardiovascular and lymphatic systems, collectively[ncithesaurus:Vascular_System]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0008198.md b/md/UBERON/98/UBERON_0008198.md index 2b23d0e998..36fc52b206 100644 --- a/md/UBERON/98/UBERON_0008198.md +++ b/md/UBERON/98/UBERON_0008198.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008198 * *Label* = nail plate - * *Definition* = The nail plate is the hard and translucent portion of the nail, composed of keratin. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nail_plate[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://purl.obolibrary.org/obo/uberon/tracker/20[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://sourceforge.net/tracker/?func=detail&aid=3307500&group_id=36855&atid=440764] + * *Definition* = The nail plate is the hard and translucent portion of the nail, composed of keratin. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nail_plate, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://purl.obolibrary.org/obo/uberon/tracker/20, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://sourceforge.net/tracker/?func=detail&aid=3307500&group_id=36855&atid=440764 ] * *Comment* = AO Notes: in FMA, the nail is the nail plate ## Synonyms - * lamina unguis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Nail_plate[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * lamina unguis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Nail_plate, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0008598.md b/md/UBERON/98/UBERON_0008598.md index 04faf2a467..fdac2250fd 100644 --- a/md/UBERON/98/UBERON_0008598.md +++ b/md/UBERON/98/UBERON_0008598.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008598 * *Label* = risorius muscle - * *Definition* = The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Risorius] + * *Definition* = The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Risorius ] ## Synonyms - * risorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Risorius] - * musculus risorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Risorius[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * risorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Risorius ] + * musculus risorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Risorius, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0008798.md b/md/UBERON/98/UBERON_0008798.md index 802729c4b6..0a165f86d4 100644 --- a/md/UBERON/98/UBERON_0008798.md +++ b/md/UBERON/98/UBERON_0008798.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008798 * *Label* = rugal fold of vagina - * *Definition* = A rugal fold that is part of a vagina. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A rugal fold that is part of a vagina. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * ruga of vagina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19991] - * vaginal ruga [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19991] + * ruga of vagina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19991 ] + * vaginal ruga [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19991 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vagina](../../UBERON/96/UBERON_0000996.md) and [rugal fold](../../UBERON/90/UBERON_0008790.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0008998.md b/md/UBERON/98/UBERON_0008998.md index 33a45c0f38..72395100fd 100644 --- a/md/UBERON/98/UBERON_0008998.md +++ b/md/UBERON/98/UBERON_0008998.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008998 * *Label* = cerebrovascular system - * *Definition* = System pertaining to blood vessels in the brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003840] + * *Definition* = System pertaining to blood vessels in the brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003840 ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008998 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0009098.md b/md/UBERON/98/UBERON_0009098.md index adbbe81ff6..98db6648bf 100644 --- a/md/UBERON/98/UBERON_0009098.md +++ b/md/UBERON/98/UBERON_0009098.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009098 * *Label* = gravid uterus - * *Definition* = The uterus in pregnancy [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/gravid+uterus] + * *Definition* = The uterus in pregnancy [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/gravid+uterus ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * SCTID:362253003 - * UMLS:C1514389 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pregnant_Uterus] + * UMLS:C1514389 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pregnant_Uterus ] * ncithesaurus:Gravid_Uterus * ncithesaurus:Pregnant_Uterus @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [contains](../../RO/19/RO_0001019.md) some [embryo](../../UBERON/22/UBERON_0000922.md) and [uterus](../../UBERON/95/UBERON_0000995.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0009198.md b/md/UBERON/98/UBERON_0009198.md index 1406c9cad9..b6eb75373b 100644 --- a/md/UBERON/98/UBERON_0009198.md +++ b/md/UBERON/98/UBERON_0009198.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009198 * *Label* = craniofacial suture - * *Definition* = any suture between cranial and/or facial bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097094] + * *Definition* = any suture between cranial and/or facial bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097094 ] * *Comment* = Editor notes: we follow GO in dividing sutures into cranial and facial and making a grouping class, but this is not consistent with FMA ## Synonyms - * joint of the skull bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * articulation of skull bones [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * joint of the skull bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * articulation of skull bones [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0009598.md b/md/UBERON/98/UBERON_0009598.md index 6486a4314d..2f17f7617d 100644 --- a/md/UBERON/98/UBERON_0009598.md +++ b/md/UBERON/98/UBERON_0009598.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009598 * *Label* = mesenchyme of interdigital region between digits 3 and 4 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 3 and 4. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 3 and 4. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between digits 3 and 4](../../UBERON/22/UBERON_0006022.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0009898.md b/md/UBERON/98/UBERON_0009898.md index a11a92f8dc..4a43c2fbc2 100644 --- a/md/UBERON/98/UBERON_0009898.md +++ b/md/UBERON/98/UBERON_0009898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009898 * *Label* = left auditory cortex - * *Definition* = An auditory cortex that is in the right side of a brain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An auditory cortex that is in the right side of a brain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [auditory cortex](../../UBERON/93/UBERON_0001393.md) and [in_right_side_of](../../BSPO/21/BSPO_0000121.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010198.md b/md/UBERON/98/UBERON_0010198.md index 94d8b440d0..b2d54e3b40 100644 --- a/md/UBERON/98/UBERON_0010198.md +++ b/md/UBERON/98/UBERON_0010198.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010198 * *Label* = carotid duct - * *Definition* = a segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus] + * *Definition* = a segment of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it regresses early in development to allow the carotid axis to take its definitive appearance. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus ] * *Comment* = In amphibians, closes at metamorphosis[Kardong] ## Synonyms - * ductus caroticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:17006] + * ductus caroticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:17006 ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010298.md b/md/UBERON/98/UBERON_0010298.md index e346241f0c..02442885e3 100644 --- a/md/UBERON/98/UBERON_0010298.md +++ b/md/UBERON/98/UBERON_0010298.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010398.md b/md/UBERON/98/UBERON_0010398.md index ae0134e523..e369fd8e6a 100644 --- a/md/UBERON/98/UBERON_0010398.md +++ b/md/UBERON/98/UBERON_0010398.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010398 * *Label* = spleen marginal sinus - * *Definition* = the border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath (PALS) that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:MP] + * *Definition* = the border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath (PALS) that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:MP ] * *Comment* = Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus (which may not exist in human) has been included as part of the white pulp. The perifollicular zone, which is present in human and not rodents, may be the functional equivalent of the marginal sinus in rodents.[MP:0002363] ## Synonyms - * splenic marginal sinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002363] + * splenic marginal sinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002363 ] ## Cross-references * MA:0000754 - * UMLS:C1710157 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Marginal_Sinus] + * UMLS:C1710157 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Marginal_Sinus ] * ncithesaurus:Splenic_Marginal_Sinus ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010498.md b/md/UBERON/98/UBERON_0010498.md index b6d81385ab..4d948ca73a 100644 --- a/md/UBERON/98/UBERON_0010498.md +++ b/md/UBERON/98/UBERON_0010498.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010498 * *Label* = pseudostratified columnar epithelium - * *Definition* = A simple columnar epithelium that looks stratified but is not, because its cells are arranged with their nuclei at different levels. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pseudostratified_columnar_epithelium[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://medical-dictionary.thefreedictionary.com/pseudostratified+epithelium] + * *Definition* = A simple columnar epithelium that looks stratified but is not, because its cells are arranged with their nuclei at different levels. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pseudostratified_columnar_epithelium, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://medical-dictionary.thefreedictionary.com/pseudostratified+epithelium ] * *Comment* = AO notes: glandular in NCIT; we consider the two NCIT terms synonymous. Function notes: Pseudostratified epithelia function in secretion or absorption. If a specimen looks stratified but has cilia, then it is a pseudostratified ciliated epithelium, since stratified epithelia do not have cilia. ## Synonyms @@ -12,8 +12,8 @@ ## Cross-references * FMA:45572 - * UMLS:C0836138 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pseudostratified_Columnar_Epithelium] - * UMLS:C1514590 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pseudostratified_Epithelium] + * UMLS:C0836138 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pseudostratified_Columnar_Epithelium ] + * UMLS:C1514590 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pseudostratified_Epithelium ] * Wikipedia:Pseudostratified_columnar_epithelium * ncithesaurus:Pseudostratified_Columnar_Epithelium * ncithesaurus:Pseudostratified_Epithelium @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010698.md b/md/UBERON/98/UBERON_0010698.md index faceacd8c2..d7074c1ace 100644 --- a/md/UBERON/98/UBERON_0010698.md +++ b/md/UBERON/98/UBERON_0010698.md @@ -6,11 +6,11 @@ ## Synonyms - * fore limb digit metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * metacarpal bone pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000953] + * fore limb digit metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * metacarpal bone pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000953 ] * metacarpal pre-cartilage condensation - * metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000953] - * hand digit metacarpus pre-cartilage condensation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000953 ] + * hand digit metacarpus pre-cartilage condensation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -29,7 +29,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [manual digit metacarpus endochondral element](../../UBERON/42/UBERON_0015042.md) ## Other Logical Axioms @@ -37,8 +37,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0010898.md b/md/UBERON/98/UBERON_0010898.md index d04960f791..b71b18ce1e 100644 --- a/md/UBERON/98/UBERON_0010898.md +++ b/md/UBERON/98/UBERON_0010898.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010898 * *Label* = gastralium - * *Definition* = Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO_REF:0000034[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000170[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000127[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://dx.plos.org/10.1371/journal.pone.0051070] + * *Definition* = Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO_REF:0000034, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000170, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000127, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://dx.plos.org/10.1371/journal.pone.0051070 ] * *Comment* = These bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons[WP] ## Synonyms - * abdominal rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * belly rib [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:curator] - * gastralia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VSAO:0000127[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * abdominal rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * belly rib [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:curator ] + * gastralia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VSAO:0000127, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011198.md b/md/UBERON/98/UBERON_0011198.md index 900ee7121d..a8998a281b 100644 --- a/md/UBERON/98/UBERON_0011198.md +++ b/md/UBERON/98/UBERON_0011198.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011198 * *Label* = muscle layer of large intestine - * *Definition* = A muscle layer that is part of a large intestine. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle layer that is part of a large intestine. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * muscular coat of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14971] - * muscular layer of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14971] - * muscularis externa of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14971] - * tunica muscularis intestini crassi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * muscular coat of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14971 ] + * muscular layer of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14971 ] + * muscularis externa of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14971 ] + * tunica muscularis intestini crassi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:14971 - * UMLS:C0734205 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Large_Intestinal_Muscular_Coat] + * UMLS:C0734205 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Large_Intestinal_Muscular_Coat ] * ncithesaurus:Large_Intestinal_Muscular_Coat ## Subsets @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine](../../UBERON/59/UBERON_0000059.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011298.md b/md/UBERON/98/UBERON_0011298.md index baeae9601d..0ff923413b 100644 --- a/md/UBERON/98/UBERON_0011298.md +++ b/md/UBERON/98/UBERON_0011298.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011298 * *Label* = submucosa of uterine tube - * *Definition* = The submucous layer of the wall of the uterine tube. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002116] + * *Definition* = The submucous layer of the wall of the uterine tube. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002116 ] ## Synonyms * submucosa of fallopian tube - * tela submucosa tubae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002116[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * submucous layer of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0002116] + * tela submucosa tubae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002116, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * submucous layer of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0002116 ] * uterine submucosa ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fallopian tube](../../UBERON/89/UBERON_0003889.md) and [submucosa](../../UBERON/09/UBERON_0000009.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011598.md b/md/UBERON/98/UBERON_0011598.md index 5400187277..b8578a13ee 100644 --- a/md/UBERON/98/UBERON_0011598.md +++ b/md/UBERON/98/UBERON_0011598.md @@ -6,7 +6,7 @@ ## Synonyms - * coronoid process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001673] + * coronoid process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001673 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011698.md b/md/UBERON/98/UBERON_0011698.md index e4c0b4fb3d..b2c7213e02 100644 --- a/md/UBERON/98/UBERON_0011698.md +++ b/md/UBERON/98/UBERON_0011698.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011698 * *Label* = midgut loop - * *Definition* = Portion of midgut after it bends around the superior mesenteric artery [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Wikipedia] + * *Definition* = Portion of midgut after it bends around the superior mesenteric artery [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Wikipedia ] ## Synonyms @@ -11,7 +11,7 @@ ## Cross-references * EMAPA:17036 - * UMLS:C1513298 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Midgut_Loop] + * UMLS:C1513298 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Midgut_Loop ] * VHOG:0000673 * Wikipedia:Wikipedia * ncithesaurus:Midgut_Loop @@ -33,8 +33,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011798.md b/md/UBERON/98/UBERON_0011798.md index 445e15668a..f615d640f7 100644 --- a/md/UBERON/98/UBERON_0011798.md +++ b/md/UBERON/98/UBERON_0011798.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011798 * *Label* = tertial remex feather - * *Definition* = A remex feather that is connected to the humerus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Flight_feather#Tertials] + * *Definition* = A remex feather that is connected to the humerus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Flight_feather#Tertials ] * *Comment* = ertials are connected to the humerus in some species. These elongated "true" tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such.[11] However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries. ## Synonyms * tertial flight feather * tertial remex - * tertial remiges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tertial remiges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * tertiary flight feather * tertiary remex - * tertiary remiges [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * tertiary remiges [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [humerus](../../UBERON/76/UBERON_0000976.md) and [remex feather](../../UBERON/95/UBERON_0011795.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0011898.md b/md/UBERON/98/UBERON_0011898.md index 30567122af..1cb40522dc 100644 --- a/md/UBERON/98/UBERON_0011898.md +++ b/md/UBERON/98/UBERON_0011898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011898 * *Label* = skeletal muscle endomysium - * *Definition* = Reticular tissue which surrounds a skeletal muscle cell. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86022] + * *Definition* = Reticular tissue which surrounds a skeletal muscle cell. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86022 ] ## Synonyms @@ -23,15 +23,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endomysium](../../UBERON/95/UBERON_0011895.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0012198.md b/md/UBERON/98/UBERON_0012198.md index d48f077b50..1927bd8297 100644 --- a/md/UBERON/98/UBERON_0012198.md +++ b/md/UBERON/98/UBERON_0012198.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012198 * *Label* = intercostal space - * *Definition* = Space of compartment of trunk bounded by the upper and lower surfaces of two consecutive ribs. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:12243[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intercostal_space] + * *Definition* = Space of compartment of trunk bounded by the upper and lower surfaces of two consecutive ribs. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:12243, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intercostal_space ] ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0012298.md b/md/UBERON/98/UBERON_0012298.md index e50efb8115..9d0576d462 100644 --- a/md/UBERON/98/UBERON_0012298.md +++ b/md/UBERON/98/UBERON_0012298.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012298 * *Label* = female urethral crest - * *Definition* = The conspicuous longitudinal fold of mucosa on the posterior wall of the female urethra[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0011842[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * *Definition* = The conspicuous longitudinal fold of mucosa on the posterior wall of the female urethra[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0011842, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Synonyms - * crista urethralis femininae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * urethral crest (female) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:85271] - * urethral crest of female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:anna] + * crista urethralis femininae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * urethral crest (female) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:85271 ] + * urethral crest of female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:anna ] ## Cross-references @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [urethral crest](../../UBERON/96/UBERON_0012296.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012298 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0012398.md b/md/UBERON/98/UBERON_0012398.md index 45305cc808..e8ccc0ed66 100644 --- a/md/UBERON/98/UBERON_0012398.md +++ b/md/UBERON/98/UBERON_0012398.md @@ -6,7 +6,7 @@ ## Synonyms - * circular muscle layer of segment of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:81160] + * circular muscle layer of segment of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:81160 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [circular muscle layer](../../UBERON/68/UBERON_0012368.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine smooth muscle](../../UBERON/20/UBERON_0004220.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0012498.md b/md/UBERON/98/UBERON_0012498.md index 9c7cd8b959..64df2bf933 100644 --- a/md/UBERON/98/UBERON_0012498.md +++ b/md/UBERON/98/UBERON_0012498.md @@ -6,10 +6,10 @@ ## Synonyms - * appendiceal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14997] - * appendix serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14997] - * serosa of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14997] - * visceral peritoneum of vermiform appendix [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14997] + * appendiceal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14997 ] + * appendix serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14997 ] + * serosa of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14997 ] + * visceral peritoneum of vermiform appendix [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14997 ] ## Cross-references @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [vermiform appendix](../../UBERON/54/UBERON_0001154.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0013198.md b/md/UBERON/98/UBERON_0013198.md index 8e20d495c5..79d420b40f 100644 --- a/md/UBERON/98/UBERON_0013198.md +++ b/md/UBERON/98/UBERON_0013198.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013198 * *Label* = cocoon - * *Definition* = A casing spun of silk by many moth caterpillars, and numerous other holometabolous insect larvae as a protective covering for the pupa[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Pupa#Cocoon] + * *Definition* = A casing spun of silk by many moth caterpillars, and numerous other holometabolous insect larvae as a protective covering for the pupa[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Pupa#Cocoon ] * *Comment* = analagous to a puparium in other insects ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013198 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0013398.md b/md/UBERON/98/UBERON_0013398.md index d8fcb97fa8..ab790ca00c 100644 --- a/md/UBERON/98/UBERON_0013398.md +++ b/md/UBERON/98/UBERON_0013398.md @@ -22,7 +22,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [gland](../../UBERON/30/UBERON_0002530.md) and [part_of](../../BFO/50/BFO_0000050.md) some [optic choroid](../../UBERON/76/UBERON_0001776.md) ## Other Logical Axioms @@ -31,8 +31,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Teleosts bear a body of capillary adjacent to the optic nerve called the choroidal gland. Though its function is not known, it is believed to be a supplemental oxygen carrier[http://en.wikipedia.org/wiki/Choroid#In_bony_fish]. * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a gland on the dorsal half of the fish eyeball[http://en.academic.ru/dic.nsf/en_ichthyology/2916/choroid]l - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0013498.md b/md/UBERON/98/UBERON_0013498.md index 37d49f0e92..d4f495896b 100644 --- a/md/UBERON/98/UBERON_0013498.md +++ b/md/UBERON/98/UBERON_0013498.md @@ -9,7 +9,7 @@ * vestibulocochlear VIII ganglion complex * vestibulocochlear ganglion complex - * vestibular VIII ganglion complex [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0004313] + * vestibular VIII ganglion complex [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0004313 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013498 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0013598.md b/md/UBERON/98/UBERON_0013598.md index e89aeadb59..52e7c95e86 100644 --- a/md/UBERON/98/UBERON_0013598.md +++ b/md/UBERON/98/UBERON_0013598.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0013598 * *Label* = accessory nucleus of optic tract - * *Definition* = One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=61308] + * *Definition* = One of a set of small groups of neuron cell bodies located along the trajectory of optic fibers in the mesencephalon. These consist of the posterior nucleus [TA] (nucleus posterior [TA]), medial nucleus [TA] (nucleus medialis [TA]), and lateral nucleus [TA] (nucleus lateralis [TA]), which are also called the posterior, medial, and lateral terminal nuclei. The connections of these nuclei, along with the nucleus of the optic tract, make up the accessory optic system that appears to be concerned with retinal slip in specific directions [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=61308 ] ## Synonyms - * nuclei accessorii tractus optici [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nuclei accessorii tractus optici [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * nucleus of accessory optic system ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0013698.md b/md/UBERON/98/UBERON_0013698.md index d8abbb8aca..e112698479 100644 --- a/md/UBERON/98/UBERON_0013698.md +++ b/md/UBERON/98/UBERON_0013698.md @@ -6,12 +6,12 @@ ## Synonyms - * pubic hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54319] + * pubic hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54319 ] ## Cross-references * FMA:54319 - * UMLS:C1305636 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pubic_Hair] + * UMLS:C1305636 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pubic_Hair ] * Wikipedia:Pubic_hair * ncithesaurus:Pubic_Hair @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0014398.md b/md/UBERON/98/UBERON_0014398.md index fc1c26c288..a355ce780f 100644 --- a/md/UBERON/98/UBERON_0014398.md +++ b/md/UBERON/98/UBERON_0014398.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014398 * *Label* = respiratory muscle - * *Definition* = Muscle that is part of the respiratory system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:cjm] + * *Definition* = Muscle that is part of the respiratory system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:cjm ] * *Comment* = This class may be merged with 'respiratory system muscle'; check intercostals ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [capable of part of](../../RO/16/RO_0002216.md) some [respiratory gaseous exchange](../../GO/85/GO_0007585.md) and [muscle organ](../../UBERON/30/UBERON_0001630.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014398 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0014598.md b/md/UBERON/98/UBERON_0014598.md index 890a417ab5..a6801a1910 100644 --- a/md/UBERON/98/UBERON_0014598.md +++ b/md/UBERON/98/UBERON_0014598.md @@ -6,12 +6,12 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus descending division - forniceal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1374[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHf [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1374[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus forniceal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHf] - * paraventricular hypothalamic nucleus, descending division, forniceal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHf] - * paraventricular nucleus of the hypothalamus, descending division, forniceal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHf] - * paraventricular nucleus of the hypothalamus, parvicellular division forniceal part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHf] + * paraventricular nucleus of the hypothalamus descending division - forniceal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1374, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHf [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1374, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus forniceal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHf ] + * paraventricular hypothalamic nucleus, descending division, forniceal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHf ] + * paraventricular nucleus of the hypothalamus, descending division, forniceal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHf ] + * paraventricular nucleus of the hypothalamus, parvicellular division forniceal part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHf ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014598 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0014698.md b/md/UBERON/98/UBERON_0014698.md index 5421fec01e..b8170b1523 100644 --- a/md/UBERON/98/UBERON_0014698.md +++ b/md/UBERON/98/UBERON_0014698.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014698 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0014798.md b/md/UBERON/98/UBERON_0014798.md index 6cecbc6963..7130af251d 100644 --- a/md/UBERON/98/UBERON_0014798.md +++ b/md/UBERON/98/UBERON_0014798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014798 * *Label* = clavotrapezius muscle - * *Definition* = The most anterior of the trapezius muscles, found in felids, it is also the largest. Its fibers run obliquely to the ventral surface. Its origin is the superior nuchal line and median dorsal line and its insertion is the clavicle. Its action is to draw the clavicle dorsally and towards the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cat_anatomy#Clavotrapezius] + * *Definition* = The most anterior of the trapezius muscles, found in felids, it is also the largest. Its fibers run obliquely to the ventral surface. Its origin is the superior nuchal line and median dorsal line and its insertion is the clavicle. Its action is to draw the clavicle dorsally and towards the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cat_anatomy#Clavotrapezius ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014798 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0014898.md b/md/UBERON/98/UBERON_0014898.md index 47931651a3..c8b6f563e3 100644 --- a/md/UBERON/98/UBERON_0014898.md +++ b/md/UBERON/98/UBERON_0014898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014898 * *Label* = lamina terminalis of ischium - * *Definition* = In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:0000881[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:0000881, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014898 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_0015098.md b/md/UBERON/98/UBERON_0015098.md index d2ee772884..b26d5ef48c 100644 --- a/md/UBERON/98/UBERON_0015098.md +++ b/md/UBERON/98/UBERON_0015098.md @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [pre-cartilage condensation](../../UBERON/66/UBERON_0005866.md) and [distal carpal bone 5 endochondral element](../../UBERON/96/UBERON_0015096.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015098 + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000098.md b/md/UBERON/98/UBERON_2000098.md index 6554662d88..8e38086f1d 100644 --- a/md/UBERON/98/UBERON_2000098.md +++ b/md/UBERON/98/UBERON_2000098.md @@ -6,9 +6,9 @@ ## Synonyms - * cell cycle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000098] - * cell division [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000098] - * proliferation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000098] + * cell cycle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000098 ] + * cell division [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000098 ] + * proliferation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000098 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000298.md b/md/UBERON/98/UBERON_2000298.md index 64833f9e4a..04e6b48bbf 100644 --- a/md/UBERON/98/UBERON_2000298.md +++ b/md/UBERON/98/UBERON_2000298.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000398.md b/md/UBERON/98/UBERON_2000398.md index c587c6e62a..37ec5a3128 100644 --- a/md/UBERON/98/UBERON_2000398.md +++ b/md/UBERON/98/UBERON_2000398.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000498.md b/md/UBERON/98/UBERON_2000498.md index 18a3757203..49f28bd3fe 100644 --- a/md/UBERON/98/UBERON_2000498.md +++ b/md/UBERON/98/UBERON_2000498.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000698.md b/md/UBERON/98/UBERON_2000698.md index 677c6b4c53..d299351ef6 100644 --- a/md/UBERON/98/UBERON_2000698.md +++ b/md/UBERON/98/UBERON_2000698.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000698 * *Label* = tripus - * *Definition* = Endochondral bone, membrane bone, and Weberian ossicle that is an element of third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Endochondral bone, membrane bone, and Weberian ossicle that is an element of third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * Weberian ossicle 4 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000698] - * fourth Weberian ossicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000698] + * Weberian ossicle 4 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000698 ] + * fourth Weberian ossicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000698 ] ## Cross-references @@ -35,7 +35,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2000798.md b/md/UBERON/98/UBERON_2000798.md index 15b42780e8..904884b49c 100644 --- a/md/UBERON/98/UBERON_2000798.md +++ b/md/UBERON/98/UBERON_2000798.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 30 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000798[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 30 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000798, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_2000898.md b/md/UBERON/98/UBERON_2000898.md index d3ce13913b..dfe96121c9 100644 --- a/md/UBERON/98/UBERON_2000898.md +++ b/md/UBERON/98/UBERON_2000898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000898 * *Label* = hypaxial region somite 26 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2001098.md b/md/UBERON/98/UBERON_2001098.md index 59e63c7479..aece14ef30 100644 --- a/md/UBERON/98/UBERON_2001098.md +++ b/md/UBERON/98/UBERON_2001098.md @@ -6,7 +6,7 @@ ## Synonyms - * immature sensory hair cells anterior macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001098[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * immature sensory hair cells anterior macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001098, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_2001298.md b/md/UBERON/98/UBERON_2001298.md index c56e6d4938..394ec94158 100644 --- a/md/UBERON/98/UBERON_2001298.md +++ b/md/UBERON/98/UBERON_2001298.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2001698.md b/md/UBERON/98/UBERON_2001698.md index 98ac4838b4..89fe378fe2 100644 --- a/md/UBERON/98/UBERON_2001698.md +++ b/md/UBERON/98/UBERON_2001698.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001698 * *Label* = anal-fin stay - * *Definition* = Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * anal fin stay [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001698] + * anal fin stay [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001698 ] ## Cross-references @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2001798.md b/md/UBERON/98/UBERON_2001798.md index 752f309053..7e0ebcb806 100644 --- a/md/UBERON/98/UBERON_2001798.md +++ b/md/UBERON/98/UBERON_2001798.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001798 * *Label* = epicentral - * *Definition* = Intermuscular bone that articulates with the vertebral centrum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Intermuscular bone that articulates with the vertebral centrum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * di?pipleural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000131] - * neoneural [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000165[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PSPUB:0000166] + * di?pipleural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000131 ] + * neoneural [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000165, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PSPUB:0000166 ] ## Cross-references @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2001898.md b/md/UBERON/98/UBERON_2001898.md index dbeda25613..7f2da464ca 100644 --- a/md/UBERON/98/UBERON_2001898.md +++ b/md/UBERON/98/UBERON_2001898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001898 * *Label* = ceratobranchial element - * *Definition* = Skeletal element that is bilaterally paired and forms part of the ventral branchial arches. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Skeletal element that is bilaterally paired and forms part of the ventral branchial arches. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2001998.md b/md/UBERON/98/UBERON_2001998.md index 3514025711..59f7eb13f6 100644 --- a/md/UBERON/98/UBERON_2001998.md +++ b/md/UBERON/98/UBERON_2001998.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001998 * *Label* = posttemporal-supracleithrum - * *Definition* = Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = A posttemporo-supracleithrum is a bone present in Siluriformes. There are different opinions if this is the result of an ontogenetic or a phylogenetic fusion or the loss or one or other bone. ## Synonyms - * postemporo-supracleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001998] - * posttemporo-supracleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001998] - * posttemporal [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001998] - * supracleithrum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001998] + * postemporo-supracleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001998 ] + * posttemporo-supracleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001998 ] + * posttemporal [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001998 ] + * supracleithrum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001998 ] ## Cross-references @@ -37,7 +37,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2002098.md b/md/UBERON/98/UBERON_2002098.md index 4017e310ad..5cc5cc90f8 100644 --- a/md/UBERON/98/UBERON_2002098.md +++ b/md/UBERON/98/UBERON_2002098.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2002198.md b/md/UBERON/98/UBERON_2002198.md index 0f8d8de647..4ddb9c9285 100644 --- a/md/UBERON/98/UBERON_2002198.md +++ b/md/UBERON/98/UBERON_2002198.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002198 * *Label* = obsolete head muscle - * *Definition* = Muscle which is part of the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Muscle which is part of the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms - * cephalic muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002198] + * cephalic muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002198 ] ## Cross-references @@ -29,8 +29,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = UBERON:0002376 * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_2005098.md b/md/UBERON/98/UBERON_2005098.md index 755cab4eb4..2d9778637b 100644 --- a/md/UBERON/98/UBERON_2005098.md +++ b/md/UBERON/98/UBERON_2005098.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005098 * *Label* = central ray artery - * *Definition* = Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_2005198.md b/md/UBERON/98/UBERON_2005198.md index 68278c27fc..6fc11fd3a9 100644 --- a/md/UBERON/98/UBERON_2005198.md +++ b/md/UBERON/98/UBERON_2005198.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral lateral 2 interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005198] + * rostral lateral 2 interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005198 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_3000798.md b/md/UBERON/98/UBERON_3000798.md index e617f6e742..8c5c419a49 100644 --- a/md/UBERON/98/UBERON_3000798.md +++ b/md/UBERON/98/UBERON_3000798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000798 * *Label* = presacral shield - * *Definition* = Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:Trueb_1973] + * *Definition* = Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:Trueb_1973 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3000898.md b/md/UBERON/98/UBERON_3000898.md index 2bb3fbbe6c..88b9fd2aec 100644 --- a/md/UBERON/98/UBERON_3000898.md +++ b/md/UBERON/98/UBERON_3000898.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000898 * *Label* = trochanteric crest - * *Definition* = Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3000998.md b/md/UBERON/98/UBERON_3000998.md index 8b77846b57..10a01bf7a8 100644 --- a/md/UBERON/98/UBERON_3000998.md +++ b/md/UBERON/98/UBERON_3000998.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000998 * *Label* = suprarostral cartilage - * *Definition* = Larval upper jaws articulate with trabecular horns. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Larval upper jaws articulate with trabecular horns. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -31,7 +31,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3010098.md b/md/UBERON/98/UBERON_3010098.md index cc849207fa..f31b209f84 100644 --- a/md/UBERON/98/UBERON_3010098.md +++ b/md/UBERON/98/UBERON_3010098.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010098 * *Label* = M. plantaris profundus - * *Definition* = Originates on the medial half of the ligamentum calcanei and inserts along the dorsal surface of the aponeurosis plantaris and extends to the level of the base of the prehallux. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Originates on the medial half of the ligamentum calcanei and inserts along the dorsal surface of the aponeurosis plantaris and extends to the level of the base of the prehallux. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3010298.md b/md/UBERON/98/UBERON_3010298.md index 68a2f0339f..4769882cd3 100644 --- a/md/UBERON/98/UBERON_3010298.md +++ b/md/UBERON/98/UBERON_3010298.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010298 * *Label* = obsolete primary spermatogonium - * *Definition* = A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISSN:0289-0003] + * *Definition* = A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISSN:0289-0003 ] ## Synonyms - * primary spermatogonia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010298] + * primary spermatogonia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010298 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000656 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_3010398.md b/md/UBERON/98/UBERON_3010398.md index d0cba13502..6ac42b3af9 100644 --- a/md/UBERON/98/UBERON_3010398.md +++ b/md/UBERON/98/UBERON_3010398.md @@ -26,8 +26,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/98/UBERON_3010498.md b/md/UBERON/98/UBERON_3010498.md index 9fbf3ed6d2..dd582c9ca4 100644 --- a/md/UBERON/98/UBERON_3010498.md +++ b/md/UBERON/98/UBERON_3010498.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010498 * *Label* = cutaneus artery - * *Definition* = Artery which supplies blood to the thymus and parotoid region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = Artery which supplies blood to the thymus and parotoid region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3010698.md b/md/UBERON/98/UBERON_3010698.md index 4ae7ef8f3b..5c361db38f 100644 --- a/md/UBERON/98/UBERON_3010698.md +++ b/md/UBERON/98/UBERON_3010698.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010698 * *Label* = m. serratus medius - * *Definition* = Muscle which originates from the transverse process of presacral vertebrae III and inserts on the central and medial surface of the suprascapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates from the transverse process of presacral vertebrae III and inserts on the central and medial surface of the suprascapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_3010798.md b/md/UBERON/98/UBERON_3010798.md index c6c9517d94..b4fc2dfb73 100644 --- a/md/UBERON/98/UBERON_3010798.md +++ b/md/UBERON/98/UBERON_3010798.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010798 * *Label* = ramulus suprabranchialis anterior - * *Definition* = Ramulus that innervates the suprabranchial line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Ramulus that innervates the suprabranchial line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/98/UBERON_4200098.md b/md/UBERON/98/UBERON_4200098.md index 4e371efb72..177df0f184 100644 --- a/md/UBERON/98/UBERON_4200098.md +++ b/md/UBERON/98/UBERON_4200098.md @@ -29,7 +29,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = Ad - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0000199.md b/md/UBERON/99/UBERON_0000199.md index 1b60a07609..a530557619 100644 --- a/md/UBERON/99/UBERON_0000199.md +++ b/md/UBERON/99/UBERON_0000199.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000199 * *Label* = neck of radius - * *Definition* = the narrow part of the shaft of the radius just below the head. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.medilexicon.com/medicaldictionary.php?t=58913] + * *Definition* = the narrow part of the shaft of the radius just below the head. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.medilexicon.com/medicaldictionary.php?t=58913 ] ## Synonyms - * radial neck [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:23479] + * radial neck [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:23479 ] ## Cross-references @@ -32,8 +32,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0000399.md b/md/UBERON/99/UBERON_0000399.md index 496a52495d..8b48637ec6 100644 --- a/md/UBERON/99/UBERON_0000399.md +++ b/md/UBERON/99/UBERON_0000399.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000399 * *Label* = jejunal mucosa - * *Definition* = A mucosa that is part of a jejunum [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a jejunum [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * jejunal mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14949] - * jejunum mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14949] - * jejunum mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * jejunum mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * jejunum organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14949] - * mucosa of organ of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of jejunum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * jejunal mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14949 ] + * jejunum mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14949 ] + * jejunum mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * jejunum mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * jejunum organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14949 ] + * mucosa of organ of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of jejunum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -36,7 +36,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [jejunum](../../UBERON/15/UBERON_0002115.md) ## Other Logical Axioms @@ -44,8 +44,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003349 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0000999.md b/md/UBERON/99/UBERON_0000999.md index b1435dd6aa..c11daf90e2 100644 --- a/md/UBERON/99/UBERON_0000999.md +++ b/md/UBERON/99/UBERON_0000999.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0000999 * *Label* = ejaculatory duct - * *Definition* = The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ejaculatory_duct] + * *Definition* = The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ejaculatory_duct ] ## Synonyms - * ductus ejaculatorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001580[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * ductus ejaculatorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001580] - * ductus ejaculatorii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Ejaculatory_duct[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ductus ejaculatorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001580, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * ductus ejaculatorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001580 ] + * ductus ejaculatorii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Ejaculatory_duct, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -24,7 +24,7 @@ * MIAA:0000170 * OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA * SCTID:279665005 - * UMLS:C0013747 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Ejaculatory_Duct] + * UMLS:C0013747 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Ejaculatory_Duct ] * Wikipedia:Ejaculatory_duct * http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png * http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png @@ -56,8 +56,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0000999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001099.md b/md/UBERON/99/UBERON_0001099.md index 3975d880d5..d30b72209d 100644 --- a/md/UBERON/99/UBERON_0001099.md +++ b/md/UBERON/99/UBERON_0001099.md @@ -3,19 +3,19 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001099 * *Label* = subcostal vein - * *Definition* = The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostal_vein] + * *Definition* = The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostal_vein ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * vena subcostalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Subcostal_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * vena subcostalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Subcostal_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:12845 * MA:0002222 * SCTID:25248001 - * UMLS:C0226653 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Subcostal_Vein] + * UMLS:C0226653 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Subcostal_Vein ] * Wikipedia:Subcostal_vein * ncithesaurus:Subcostal_Vein @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001199.md b/md/UBERON/99/UBERON_0001199.md index 8bf0c96d1f..99a89accea 100644 --- a/md/UBERON/99/UBERON_0001199.md +++ b/md/UBERON/99/UBERON_0001199.md @@ -3,33 +3,33 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001199 * *Label* = mucosa of stomach - * *Definition* = The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_mucosa] + * *Definition* = The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_mucosa ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * gastric mucosa * gastric mucous membrane - * mucosa of organ of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucosa of organ of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * mucous membrane of stomach - * mucous membrane of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of stomach [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of ventriculus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * mucous membrane of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of stomach [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of ventriculus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * stomach mucosa - * stomach mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * stomach organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * stomach mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * stomach organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * tunica mucosa (gaster) - * tunica mucosa gastricae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:14907[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ventriculus mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * ventriculus organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * Magenschleimhaut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001308] - * tunica mucosa gastris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0001308] - * tunica mucosa gastris [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Gastric_mucosa[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * tunica mucosa gastricae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:14907, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ventriculus mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * ventriculus organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * Magenschleimhaut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001308 ] + * tunica mucosa gastris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0001308 ] + * tunica mucosa gastris [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Gastric_mucosa, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -41,7 +41,7 @@ * MESH:A03.492.766.440 * OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA * SCTID:362131005 - * UMLS:C0017136 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Gastric_Mucosa] + * UMLS:C0017136 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Gastric_Mucosa ] * Wikipedia:Gastric_mucosa * galen:GastricMucosa * http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_stomach2.jpg @@ -62,15 +62,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stomach](../../UBERON/45/UBERON_0000945.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001299.md b/md/UBERON/99/UBERON_0001299.md index 94e062334e..f9517b2a18 100644 --- a/md/UBERON/99/UBERON_0001299.md +++ b/md/UBERON/99/UBERON_0001299.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001299 * *Label* = glans penis - * *Definition* = The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. The glans penis is anatomically homologous to the clitoral glans of the female. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glans_penis] + * *Definition* = The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. The glans penis is anatomically homologous to the clitoral glans of the female. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glans_penis ] ## Synonyms - * glans [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EV:0100108] - * balanus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003118] - * coronal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Glans_penis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT] + * glans [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EV:0100108 ] + * balanus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003118 ] + * coronal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Glans_penis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT ] ## Cross-references @@ -21,7 +21,7 @@ * MA:0002726 * OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA * SCTID:263378009 - * UMLS:C0227948 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glans_Penis] + * UMLS:C0227948 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glans_Penis ] * VHOG:0001475 * Wikipedia:Glans_penis * http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg @@ -50,8 +50,9 @@ * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 * *[sexually_homologous_to](../../core#sexually/to/core#sexually_homologous_to.md)* = http://purl.obolibrary.org/obo/UBERON_0006653 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001399.md b/md/UBERON/99/UBERON_0001399.md index f89a70e408..0e965151aa 100644 --- a/md/UBERON/99/UBERON_0001399.md +++ b/md/UBERON/99/UBERON_0001399.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001399 * *Label* = deep brachial artery - * *Definition* = The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Deep_brachial_artery] + * *Definition* = The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Deep_brachial_artery ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * arteria profunda brachii [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:22695[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * arteria profunda brachii [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:22695, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * profunda brachii artery ## Cross-references @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001499.md b/md/UBERON/99/UBERON_0001499.md index 02343ae2f1..581411f11e 100644 --- a/md/UBERON/99/UBERON_0001499.md +++ b/md/UBERON/99/UBERON_0001499.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001499 * *Label* = muscle of arm - * *Definition* = A muscle organ that is part of an arm [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A muscle organ that is part of an arm [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] * *Comment* = See notes on UBERON:0001460 for possible terminological confusion over term 'arm'. MA uses this consistent with uberon (forelimb muscle is subdivided into shoulder, arm and hand) ## Synonyms - * arm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000594] - * arm skeletal muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * arm skeletal muscle tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * muscle of upper arm or lower arm [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * upper arm / lower arm muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * arm muscle system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0000141] + * arm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000594 ] + * arm skeletal muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * arm skeletal muscle tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * muscle of upper arm or lower arm [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * upper arm / lower arm muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * arm muscle system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0000141 ] ## Cross-references @@ -32,7 +32,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [muscle organ](../../UBERON/30/UBERON_0001630.md) and [part_of](../../BFO/50/BFO_0000050.md) some [arm](../../UBERON/60/UBERON_0001460.md) ## Other Logical Axioms @@ -40,8 +40,9 @@ ## Other Annotations * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0003272 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001599.md b/md/UBERON/99/UBERON_0001599.md index 6b722b9c08..0a12d21f75 100644 --- a/md/UBERON/99/UBERON_0001599.md +++ b/md/UBERON/99/UBERON_0001599.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001599 * *Label* = stapedius muscle - * *Definition* = The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stapedius_muscle] + * *Definition* = The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stapedius_muscle ] ## Synonyms - * stapedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EHDAA2:0001909] - * musculus stapedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Stapedius_muscle[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * stapedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EHDAA2:0001909 ] + * musculus stapedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Stapedius_muscle, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -19,7 +19,7 @@ * MA:0001220 * MESH:A02.633.567.950 * SCTID:244780003 - * UMLS:C0038151 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Stapedius_Muscle] + * UMLS:C0038151 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Stapedius_Muscle ] * VHOG:0000813 * Wikipedia:Stapedius_muscle * http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png @@ -37,7 +37,7 @@ * [part_of](../../BFO/50/BFO_0000050.md) some [middle ear](../../UBERON/56/UBERON_0001756.md) * [innervated_by](../../RO/05/RO_0002005.md) some [facial nerve](../../UBERON/47/UBERON_0001647.md) * [develops from](../../RO/02/RO_0002202.md) some [stapedius pre-muscle condensation](../../UBERON/29/UBERON_0010929.md) - * [has muscle insertion](../../RO/73/RO_0002373.md) some [stapes](../../UBERON/87/UBERON_0001687.md) + * [has muscle insertion](../../RO/73/RO_0002373.md) some [stapes bone](../../UBERON/87/UBERON_0001687.md) ## Equivalencies @@ -49,8 +49,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001699.md b/md/UBERON/99/UBERON_0001699.md index 913423dabf..4c070d8a91 100644 --- a/md/UBERON/99/UBERON_0001699.md +++ b/md/UBERON/99/UBERON_0001699.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001699 * *Label* = sensory root of facial nerve - * *Definition* = The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Intermediate_nerve] + * *Definition* = The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Intermediate_nerve ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * Wrisberg's nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53410] - * intermediate nerve [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53410] + * Wrisberg's nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53410 ] + * intermediate nerve [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53410 ] * nerve of Wrisberg - * nervus intermedius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:53410[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * nervus intermedius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:53410, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * pars intermedii of Wrisberg ## Cross-references @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001799.md b/md/UBERON/99/UBERON_0001799.md index 2690374df6..9850093db7 100644 --- a/md/UBERON/99/UBERON_0001799.md +++ b/md/UBERON/99/UBERON_0001799.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001799 * *Label* = vitreous chamber of eyeball - * *Definition* = The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Vitreous_chamber] + * *Definition* = The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Vitreous_chamber ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * camera postrema - * camera postrema bulbi oculi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58848[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * camera postrema bulbi oculi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58848, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * camera vitrea * camera vitrea bulbi * postremal chamber @@ -21,7 +21,7 @@ * BTO:0002087 * FMA:58848 * MA:0002461 - * UMLS:C0229095 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Vitreous_Chamber] + * UMLS:C0229095 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Vitreous_Chamber ] * Wikipedia:Vitreous_chamber * ncithesaurus:Vitreous_Chamber @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001899.md b/md/UBERON/99/UBERON_0001899.md index 1680cbcb87..c01718bcba 100644 --- a/md/UBERON/99/UBERON_0001899.md +++ b/md/UBERON/99/UBERON_0001899.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001899 * *Label* = epithalamus - * *Definition* = The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epithalamus] + * *Definition* = The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epithalamus ] ## Synonyms - * ETh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1710[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * epithalamus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epithalamus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * ETh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1710, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * epithalamus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epithalamus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -33,12 +33,12 @@ * MESH:A08.186.211.577.200 * MIAA:0000422 * NIF_GrossAnatomy:birnlex_1710 - * NeuroNames:292 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1710] + * NeuroNames:292 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1710 ] * OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA * SCTID:281487003 * TAO:0000509 - * UMLS:C0152361 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1710] - * UMLS:C0152361 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epithalamus] + * UMLS:C0152361 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1710 ] + * UMLS:C0152361 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epithalamus ] * VHOG:0000178 * Wikipedia:Epithalamus * ZFA:0000509 @@ -70,8 +70,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = The epithalamus has been historically conceived as a distinct neuroanatomical moiety within the diencephalon of all vertebrates. (...) The evolutionary origins of epithalamic structures are uncertain but asymmetry in this region is likely to have existed at the origin of the vertebrate, perhaps even the chordate, lineage.[well established][VHOG] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = epithalamic * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0001999.md b/md/UBERON/99/UBERON_0001999.md index a4046975ee..3f126316b9 100644 --- a/md/UBERON/99/UBERON_0001999.md +++ b/md/UBERON/99/UBERON_0001999.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0001999 * *Label* = iliopsoas - * *Definition* = Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliopsoas] + * *Definition* = Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliopsoas ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms * Hyrtl's muscle - * iliopsoas muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000621] - * illopsoas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001005] - * ilio-psoas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0001005] - * musculus iliopsoas [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Iliopsoas[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * iliopsoas muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000621 ] + * illopsoas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001005 ] + * ilio-psoas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0001005 ] + * musculus iliopsoas [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Iliopsoas, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * FMA:64918 * MA:0002321 * SCTID:181668001 - * UMLS:C0224417 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Iliopsoas_Muscle] + * UMLS:C0224417 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Iliopsoas_Muscle ] * VHOG:0001005 * Wikipedia:Iliopsoas * http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG @@ -52,8 +52,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0001999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002099.md b/md/UBERON/99/UBERON_0002099.md index 73888b70be..4a5a656b44 100644 --- a/md/UBERON/99/UBERON_0002099.md +++ b/md/UBERON/99/UBERON_0002099.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002099 * *Label* = cardiac septum - * *Definition* = The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A07.541.459] + * *Definition* = The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A07.541.459 ] * *Comment* = Note in GO, septum morphogenesis is part of cardiac chamber morphogenesis; need to add axioms to infer this. Taxon notes: "Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations" ## Synonyms - * cardiac septa [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * heart septa [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * cardiac septa [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * heart septa [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * heart septum * septum of heart @@ -20,7 +20,7 @@ * MA:0000083 * MESH:A07.541.459 * SCTID:362014000 - * UMLS:C0018819 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Heart_Septum] + * UMLS:C0018819 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Heart_Septum ] * XAO:0004141 * ncithesaurus:Heart_Septum @@ -37,15 +37,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) and [septum](../../UBERON/37/UBERON_0003037.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002199.md b/md/UBERON/99/UBERON_0002199.md index af2d43ff53..b0d5d00910 100644 --- a/md/UBERON/99/UBERON_0002199.md +++ b/md/UBERON/99/UBERON_0002199.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002199 * *Label* = integument - * *Definition* = The dermis, epidermis and hypodermis. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Integument] + * *Definition* = The dermis, epidermis and hypodermis. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Integument ] * *Comment* = Usage notes: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates. Note that the VSAO class appears to include adnexa by its definition. ## Synonyms - * integumentum commune [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74657[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * the integument [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:74657] - * Hautsystem [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000634] - * dermal system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000634] - * dermoid system [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000634] + * integumentum commune [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74657, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * the integument [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:74657 ] + * Hautsystem [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000634 ] + * dermal system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000634 ] + * dermoid system [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000634 ] * skin - * tegument [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000634] + * tegument [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000634 ] ## Cross-references @@ -56,8 +56,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = integumental * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = integumentary - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002299.md b/md/UBERON/99/UBERON_0002299.md index 0cdaff89d4..973d1a3a79 100644 --- a/md/UBERON/99/UBERON_0002299.md +++ b/md/UBERON/99/UBERON_0002299.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002299 * *Label* = alveolus of lung - * *Definition* = Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_alveolus] + * *Definition* = Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_alveolus ] ## Synonyms - * alveolus pulmonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_alveolus] + * alveolus pulmonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_alveolus ] * lung alveolus - * pulmonary alveolus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:7318] + * pulmonary alveolus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:7318 ] * respiratory alveolus * alveolus - * alveoli [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0000060[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * alveolus pulmonis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pulmonary_alveolus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * respiratory alveoli [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * alveoli [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0000060, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * alveolus pulmonis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pulmonary_alveolus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * respiratory alveoli [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -49,7 +49,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [alveolus](../../UBERON/15/UBERON_0003215.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lung](../../UBERON/48/UBERON_0002048.md) ## Other Logical Axioms @@ -57,8 +57,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002399.md b/md/UBERON/99/UBERON_0002399.md index 7e85188cd2..50546c6306 100644 --- a/md/UBERON/99/UBERON_0002399.md +++ b/md/UBERON/99/UBERON_0002399.md @@ -3,14 +3,14 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002399 * *Label* = lesser omentum - * *Definition* = The double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_omentum] + * *Definition* = The double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_omentum ] * *Comment* = editor note: exact part of and develops from relationships need to be established ## Synonyms - * gastrohepatic omentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_omentum] - * omentum minus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_omentum[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * small omentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Lesser_omentum] + * gastrohepatic omentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_omentum ] + * omentum minus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_omentum, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * small omentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Lesser_omentum ] ## Cross-references @@ -22,7 +22,7 @@ * FMA:9715 * MA:0001623 * SCTID:362712005 - * UMLS:C0230260 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Lesser_Omentum] + * UMLS:C0230260 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Lesser_Omentum ] * VHOG:0000357 * Wikipedia:Lesser_omentum * http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png @@ -52,8 +52,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = A membranous extension of the peritoneum from the peritoneal layers covering the ventral and the dorsal surfaces of the stomach and the first part of the duodenum. The lesser omentum extends from the portal fissure of the liver to the diaphragm, where the layers separate to enclose the end of the esophagus. It also forms two ligaments, one associated with the liver, the hepatogastric ligament, and the other, the heptatoduodenal ligament, with the duodenum. [TFD][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002499.md b/md/UBERON/99/UBERON_0002499.md index f91892a83b..fb8e653e4f 100644 --- a/md/UBERON/99/UBERON_0002499.md +++ b/md/UBERON/99/UBERON_0002499.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002499 * *Label* = cochlear labyrinth - * *Definition* = The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cochlear_labyrinth] + * *Definition* = The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cochlear_labyrinth ] * *Comment* = Editor notes: we follow the FMA in placing this in the membranous labyrinth. Notes: The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear ## Synonyms @@ -14,7 +14,7 @@ * BTO:0004686 * FMA:61259 * MA:0002809 - * UMLS:C0931689 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Cochlear_Labyrinth] + * UMLS:C0931689 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Cochlear_Labyrinth ] * Wikipedia:Cochlear_labyrinth * http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png * ncithesaurus:Cochlear_Labyrinth @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002599.md b/md/UBERON/99/UBERON_0002599.md index c44e139709..462e07f008 100644 --- a/md/UBERON/99/UBERON_0002599.md +++ b/md/UBERON/99/UBERON_0002599.md @@ -6,17 +6,17 @@ ## Synonyms - * gyrus medius olfactorius [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:281[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * gyrus olfactorius medialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:281[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * gyrus medius olfactorius [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:281, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * gyrus olfactorius medialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:281, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:MOG * FMA:74509 * NIF_GrossAnatomy:birnlex_1127 - * NeuroNames:281 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1127] + * NeuroNames:281 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1127 ] * SCTID:369103002 - * UMLS:C0152331 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1127] + * UMLS:C0152331 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1127 ] ## Subsets @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002699.md b/md/UBERON/99/UBERON_0002699.md index 82893646ef..ef25e12f72 100644 --- a/md/UBERON/99/UBERON_0002699.md +++ b/md/UBERON/99/UBERON_0002699.md @@ -6,21 +6,21 @@ ## Synonyms - * supra-opticohypophysial tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62054] - * supraopticohypophyseal tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62054] - * tractus supraopticohypophysialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:62054[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * soh [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1440[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * tractus hypothalamico-hypophyseus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:391[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus hypothalamohypophysialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:391[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * tractus supraoptico-hypophyseus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:391[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * supra-opticohypophysial tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62054 ] + * supraopticohypophyseal tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62054 ] + * tractus supraopticohypophysialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:62054, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * soh [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1440, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * tractus hypothalamico-hypophyseus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:391, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus hypothalamohypophysialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:391, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * tractus supraoptico-hypophyseus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:391, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * BAMS:soh * FMA:62054 * NIF_GrossAnatomy:birnlex_1440 - * NeuroNames:391 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1440] - * UMLS:C0228368 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1440] + * NeuroNames:391 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1440 ] + * UMLS:C0228368 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1440 ] ## Subsets @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002799.md b/md/UBERON/99/UBERON_0002799.md index b71cfa8049..fc84fcff35 100644 --- a/md/UBERON/99/UBERON_0002799.md +++ b/md/UBERON/99/UBERON_0002799.md @@ -6,11 +6,11 @@ ## Synonyms - * fronto-orbital dimple [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83768] - * orbito-frontal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83768] - * orbitofrontal sulcus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BM:Tel-Cx-OFS] - * fros [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1724[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * sulcus fronto-orbitalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:77[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * fronto-orbital dimple [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83768 ] + * orbito-frontal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83768 ] + * orbitofrontal sulcus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BM:Tel-Cx-OFS ] + * fros [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_1724, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * sulcus fronto-orbitalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:77, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -18,8 +18,8 @@ * BM:Tel-Cx-OFS * FMA:83768 * NIF_GrossAnatomy:birnlex_1724 - * NeuroNames:77 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1724] - * UMLS:C0262240 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1724] + * NeuroNames:77 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1724 ] + * UMLS:C0262240 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1724 ] ## Subsets @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002899.md b/md/UBERON/99/UBERON_0002899.md index 150b336769..0e53eb4151 100644 --- a/md/UBERON/99/UBERON_0002899.md +++ b/md/UBERON/99/UBERON_0002899.md @@ -3,18 +3,18 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002899 * *Label* = hippocampal sulcus - * *Definition* = The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hippocampal_sulcus] + * *Definition* = The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hippocampal_sulcus ] * *Comment* = AO notes - two classes in ncit (in general ncit distinguishes between fissure and sulcus, whereas FMA treats these as exact synonyms) ## Synonyms - * dentate fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83747] - * hippocampal fissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83747] - * sulcus hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_4004] - * his [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4004[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * hippocampal fissure (Gratiolet) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:42] - * sulcus hippocampalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hippocampal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * sulcus hippocampi [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Hippocampal_sulcus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * dentate fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83747 ] + * hippocampal fissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83747 ] + * sulcus hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_4004 ] + * his [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_4004, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * hippocampal fissure (Gratiolet) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:42 ] + * sulcus hippocampalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hippocampal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * sulcus hippocampi [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Hippocampal_sulcus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -22,10 +22,10 @@ * BAMS:his * FMA:83747 * NIF_GrossAnatomy:birnlex_4004 - * NeuroNames:42 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4004] + * NeuroNames:42 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4004 ] * SCTID:369101000 - * UMLS:C0228251 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_4004] - * UMLS:C0228251 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Hippocampal_Fissure] + * UMLS:C0228251 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_4004 ] + * UMLS:C0228251 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Hippocampal_Fissure ] * Wikipedia:Hippocampal_sulcus * http://upload.wikimedia.org/wikipedia/commons/3/31/Hippocampus_%28brain%29.jpg * http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg @@ -44,15 +44,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [adjacent to](../../RO/20/RO_0002220.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [adjacent to](../../RO/20/RO_0002220.md) some [dentate gyrus of hippocampal formation](../../UBERON/85/UBERON_0001885.md) and [adjacent to](../../RO/20/RO_0002220.md) some [subiculum](../../UBERON/91/UBERON_0002191.md) and [subarachnoid sulcus](../../UBERON/34/UBERON_0008334.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0002999.md b/md/UBERON/99/UBERON_0002999.md index 4716264bea..0995ff4168 100644 --- a/md/UBERON/99/UBERON_0002999.md +++ b/md/UBERON/99/UBERON_0002999.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0002999 * *Label* = oral pontine reticular nucleus - * *Definition* = The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oral_pontine_reticular_nucleus] + * *Definition* = The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oral_pontine_reticular_nucleus ] ## Synonyms - * pontine reticular nucleus, rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:72468] - * Pontine reticular nucleus rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNr] - * nucleus reticularis pontis oralis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Oral_pontine_reticular_nucleus[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * pontine reticular nucleus oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PnO] - * pontine reticular nucleus rostral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PRNr] - * pontine reticular nucleus, oral part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PnO] + * pontine reticular nucleus, rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:72468 ] + * Pontine reticular nucleus rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNr ] + * nucleus reticularis pontis oralis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Oral_pontine_reticular_nucleus, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * pontine reticular nucleus oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PnO ] + * pontine reticular nucleus rostral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PRNr ] + * pontine reticular nucleus, oral part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PnO ] ## Cross-references @@ -42,8 +42,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0002999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003099.md b/md/UBERON/99/UBERON_0003099.md index cea68b5d4c..7e993ee158 100644 --- a/md/UBERON/99/UBERON_0003099.md +++ b/md/UBERON/99/UBERON_0003099.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003099 * *Label* = cranial neural crest - * *Definition* = The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_neural_crest[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001194[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_neural_crest, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001194, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] * *Comment* = This class was created automatically from a combination of ontologies ## Synonyms - * cephalic neural crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:16091] - * crista neuralis cranialis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Cranial_neural_crest[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * cephalic neural crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:16091 ] + * crista neuralis cranialis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Cranial_neural_crest, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] * head crest * head neural crest @@ -51,8 +51,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Neural crest that is part of the head.[TAO] * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = We conclude this section by listing some of the many synapomorphies of craniates, including (1) the neural crest (...).[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003199.md b/md/UBERON/99/UBERON_0003199.md index 11981cc719..448a2fca89 100644 --- a/md/UBERON/99/UBERON_0003199.md +++ b/md/UBERON/99/UBERON_0003199.md @@ -6,14 +6,14 @@ ## Synonyms - * germarium derived egg chamber [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004894] - * follicle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FBbt:00004894] + * germarium derived egg chamber [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004894 ] + * follicle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FBbt:00004894 ] ## Cross-references * FBbt:00004894 * HAO:0000287 - * UMLS:C1571705 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Follicle] + * UMLS:C1571705 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Follicle ] * ncithesaurus:Follicle ## Subsets @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003299.md b/md/UBERON/99/UBERON_0003299.md index 4decfec796..28085cd544 100644 --- a/md/UBERON/99/UBERON_0003299.md +++ b/md/UBERON/99/UBERON_0003299.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003299 * *Label* = roof plate of midbrain - * *Definition* = A roof plate that is part of a midbrain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A roof plate that is part of a midbrain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * midbrain roof plate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * midbrain roofplate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000772] - * roof plate midbrain region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000355] - * roofplate of midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * roof plate mesencephalon [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000772] - * roofplate midbrain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + VHOG:0000772] + * midbrain roof plate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * midbrain roofplate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000772 ] + * roof plate midbrain region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000355 ] + * roofplate of midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * roof plate mesencephalon [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000772 ] + * roofplate midbrain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = VHOG:0000772 ] ## Cross-references @@ -37,7 +37,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain](../../UBERON/91/UBERON_0001891.md) and [part_of](../../BFO/50/BFO_0000050.md) some [roof plate](../../UBERON/54/UBERON_0003054.md) and [tissue](../../UBERON/79/UBERON_0000479.md) ## Other Logical Axioms @@ -46,8 +46,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Roof plate that is part of the midbrain. [Bgee_curator][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003499.md b/md/UBERON/99/UBERON_0003499.md index 07687dd9e1..982cc803ac 100644 --- a/md/UBERON/99/UBERON_0003499.md +++ b/md/UBERON/99/UBERON_0003499.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003499 * *Label* = brain blood vessel - * *Definition* = A blood vessel that is part of a brain [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A blood vessel that is part of a brain [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * blood vessel of brain [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * blood vessel of brain [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [blood vessel](../../UBERON/81/UBERON_0001981.md) and [part_of](../../BFO/50/BFO_0000050.md) some [brain](../../UBERON/55/UBERON_0000955.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003599.md b/md/UBERON/99/UBERON_0003599.md index 5a97f19542..a6ca8722d0 100644 --- a/md/UBERON/99/UBERON_0003599.md +++ b/md/UBERON/99/UBERON_0003599.md @@ -3,21 +3,21 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003599 * *Label* = tail connective tissue - * *Definition* = A portion of connective tissue that is part of a tail [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of connective tissue that is part of a tail [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * connective tissue of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * connective tissue of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * portion of connective tissue of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * post-vent region textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tail portion of connective tissue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * tail textus connectivus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of post-vent region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * textus connectivus of tail [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * connective tissue of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * connective tissue of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * portion of connective tissue of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * post-vent region textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tail portion of connective tissue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * tail textus connectivus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of post-vent region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * textus connectivus of tail [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -33,15 +33,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [connective tissue](../../UBERON/84/UBERON_0002384.md) and [part_of](../../BFO/50/BFO_0000050.md) some [post-anal tail](../../UBERON/12/UBERON_0007812.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003699.md b/md/UBERON/99/UBERON_0003699.md index 38dcd2908f..6fda88688f 100644 --- a/md/UBERON/99/UBERON_0003699.md +++ b/md/UBERON/99/UBERON_0003699.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003699 * *Label* = pubic symphysis - * *Definition* = the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009575[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis] + * *Definition* = the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009575, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis ] * *Comment* = In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188192. ISBN 0-03-910284-X. ## Synonyms - * symphysis pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:16950] - * interpubic articulation [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis] - * symphisis pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis] - * symphysis pubica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * symphysis pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * symphysis pubis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Pubic_symphysis] + * symphysis pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:16950 ] + * interpubic articulation [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis ] + * symphisis pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis ] + * symphysis pubica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * symphysis pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis ] + * symphysis pubis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Pubic_symphysis, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -23,7 +23,7 @@ * MESH:A02.835.583.656 * OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA * SCTID:182200001 - * UMLS:C0034015 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pubic_Symphisis] + * UMLS:C0034015 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pubic_Symphisis ] * Wikipedia:Pubic_symphysis * http://upload.wikimedia.org/wikipedia/commons/5/51/Gray321.png * http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png @@ -52,8 +52,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Medial attachment of the two halves of the pelvic girdle.[AAO] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0003999.md b/md/UBERON/99/UBERON_0003999.md index e59c7acfc4..cdb247b26d 100644 --- a/md/UBERON/99/UBERON_0003999.md +++ b/md/UBERON/99/UBERON_0003999.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0003999 * *Label* = hyoid bone body - * *Definition* = the main curve of the hyoid bone, from which the horns extend [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009917[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_hyoid_bone] + * *Definition* = the main curve of the hyoid bone, from which the horns extend [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009917, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_hyoid_bone ] ## Synonyms - * base of hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002958] - * basihyal bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002958] - * basihyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002958] - * body of hyoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ISBN10:0073040584] - * body of hyoid bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002958] - * corpus ossis hyoidei [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Body_of_hyoid_bone[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * hyoid bone base [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002958] + * base of hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002958 ] + * basihyal bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002958 ] + * basihyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002958 ] + * body of hyoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ISBN10:0073040584 ] + * body of hyoid bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002958 ] + * corpus ossis hyoidei [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Body_of_hyoid_bone, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * hyoid bone base [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002958 ] ## Cross-references @@ -41,8 +41,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0003999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004099.md b/md/UBERON/99/UBERON_0004099.md index 199ca1b7d4..75f17188ad 100644 --- a/md/UBERON/99/UBERON_0004099.md +++ b/md/UBERON/99/UBERON_0004099.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004099 * *Label* = joint space of elbow - * *Definition* = Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + HP:0003943] + * *Definition* = Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = HP:0003943 ] ## Synonyms - * synovial cavity of elbow joint [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:38911] + * synovial cavity of elbow joint [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:38911 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [elbow joint](../../UBERON/90/UBERON_0001490.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004199.md b/md/UBERON/99/UBERON_0004199.md index 9bbe4a48ff..ee777c498a 100644 --- a/md/UBERON/99/UBERON_0004199.md +++ b/md/UBERON/99/UBERON_0004199.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004199 * *Label* = S-shaped body - * *Definition* = The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072050] + * *Definition* = The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072050 ] * *Comment* = TODO ## Synonyms - * SSB [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * stage II nephron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] + * SSB [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * stage II nephron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html ] ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004399.md b/md/UBERON/99/UBERON_0004399.md index f1ef68d4d0..3a2413f830 100644 --- a/md/UBERON/99/UBERON_0004399.md +++ b/md/UBERON/99/UBERON_0004399.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004399 * *Label* = epiphysis of fifth metatarsal bone - * *Definition* = An epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An epiphysis that is part of a metatarsal bone of digit 5 [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * fifth metatarsal bone epiphysis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:86315] + * fifth metatarsal bone epiphysis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:86315 ] * metatarsal 5 epiphysis ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epiphysis](../../UBERON/37/UBERON_0001437.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metatarsal bone of digit 5](../../UBERON/54/UBERON_0003654.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004499.md b/md/UBERON/99/UBERON_0004499.md index f79b915c08..26f276613a 100644 --- a/md/UBERON/99/UBERON_0004499.md +++ b/md/UBERON/99/UBERON_0004499.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004499 * *Label* = skeletal muscle tissue of tibialis anterior - * *Definition* = A portion of skeletal muscle tissue that is part of a tibialis anterior [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A portion of skeletal muscle tissue that is part of a tibialis anterior [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [tibialis anterior](../../UBERON/85/UBERON_0001385.md) and [skeletal muscle tissue](../../UBERON/34/UBERON_0001134.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004699.md b/md/UBERON/99/UBERON_0004699.md index 912988cf56..ae7d56b381 100644 --- a/md/UBERON/99/UBERON_0004699.md +++ b/md/UBERON/99/UBERON_0004699.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004699 * *Label* = outflow tract endothelium - * *Definition* = An endothelium that is part of a outflow tract [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An endothelium that is part of a outflow tract [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -23,7 +23,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [endothelium](../../UBERON/86/UBERON_0001986.md) and [part_of](../../BFO/50/BFO_0000050.md) some [outflow tract](../../UBERON/45/UBERON_0004145.md) ## Other Logical Axioms @@ -32,8 +32,9 @@ * *[homology_notes](../../UBPROP/03/UBPROP_0000003.md)* = It is assumed that during evolution, a circulatory system composed of the heart and endothelial tubular system first formed in vertebrates, medial smooth muscle then appeared for regulation of the system, and innervation of the muscle tissue took place. This sequence of development assumed for phylogenesis is actually realized in the ontogenetic processes.[well established][VHOG] * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004799.md b/md/UBERON/99/UBERON_0004799.md index 07d1e91b5b..ae3a4587e7 100644 --- a/md/UBERON/99/UBERON_0004799.md +++ b/md/UBERON/99/UBERON_0004799.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004799 * *Label* = trachea basal lamina - * *Definition* = A basal lamina that is part of a respiratory airway [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A basal lamina that is part of a respiratory airway [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * basal lamina of connective tissue of respiratory airway [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * basal lamina of connective tissue of respiratory airway [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references * MA:0001855 - * UMLS:C1710454 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Trachea_Basal_Lamina] + * UMLS:C1710454 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Trachea_Basal_Lamina ] * ncithesaurus:Trachea_Basal_Lamina ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [basal lamina of epithelium](../../UBERON/82/UBERON_0000482.md) and [part_of](../../BFO/50/BFO_0000050.md) some [respiratory airway](../../UBERON/05/UBERON_0001005.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004899.md b/md/UBERON/99/UBERON_0004899.md index 0b8be1ad04..48fe8ca192 100644 --- a/md/UBERON/99/UBERON_0004899.md +++ b/md/UBERON/99/UBERON_0004899.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004899 * *Label* = right lung cranial lobe lobar bronchus mesenchyme - * *Definition* = The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + LG:0012659] + * *Definition* = The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = LG:0012659 ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobar bronchus of right lung](../../UBERON/04/UBERON_0003404.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper lobe of right lung](../../UBERON/70/UBERON_0002170.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0004999.md b/md/UBERON/99/UBERON_0004999.md index e23f030cdb..c11329cedf 100644 --- a/md/UBERON/99/UBERON_0004999.md +++ b/md/UBERON/99/UBERON_0004999.md @@ -3,25 +3,25 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0004999 * *Label* = mucosa of biliary tree - * *Definition* = A mucosa that is part of a biliary tree [Automatically generated definition]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mucosa that is part of a biliary tree [Automatically generated definition]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * biliary tract mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tract mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tract mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tract organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tree mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tree mucosa of organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tree mucous membrane [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * biliary tree organ mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of biliary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of biliary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucosa of organ of biliary tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of biliary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * mucous membrane of biliary tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of biliary tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] - * organ mucosa of biliary tree [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * biliary tract mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tract mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tract mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tract organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tree mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tree mucosa of organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tree mucous membrane [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * biliary tree organ mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of biliary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of biliary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucosa of organ of biliary tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of biliary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * mucous membrane of biliary tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of biliary tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] + * organ mucosa of biliary tree [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Cross-references @@ -38,15 +38,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [biliary tree](../../UBERON/73/UBERON_0001173.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0004999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005099.md b/md/UBERON/99/UBERON_0005099.md index 5ff71bc537..5b99152a48 100644 --- a/md/UBERON/99/UBERON_0005099.md +++ b/md/UBERON/99/UBERON_0005099.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005099 * *Label* = short descending thin limb - * *Definition* = The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0072063] + * *Definition* = The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0072063 ] * *Comment* = TODO - epithelium types ## Synonyms @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005199.md b/md/UBERON/99/UBERON_0005199.md index 43341475f9..4b2877c56c 100644 --- a/md/UBERON/99/UBERON_0005199.md +++ b/md/UBERON/99/UBERON_0005199.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005199 * *Label* = cervical mammary gland - * *Definition* = A mammary gland that is part of a cervical region. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A mammary gland that is part of a cervical region. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -22,15 +22,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mammary gland](../../UBERON/11/UBERON_0001911.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cervical region](../../UBERON/34/UBERON_0005434.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005299.md b/md/UBERON/99/UBERON_0005299.md index 4f301dcb82..5266191faf 100644 --- a/md/UBERON/99/UBERON_0005299.md +++ b/md/UBERON/99/UBERON_0005299.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005299 * *Label* = prepuce of clitoris - * *Definition* = In female human anatomy, the clitoral hood, is a fold of skin that surrounds and protects the clitoral glans. It develops as part of the labia minora and is homologous with the foreskin (equally called prepuce) in male genitals. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_hood] + * *Definition* = In female human anatomy, the clitoral hood, is a fold of skin that surrounds and protects the clitoral glans. It develops as part of the labia minora and is homologous with the foreskin (equally called prepuce) in male genitals. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_hood ] * *Comment* = Note FMA has FMA:27886 skin of prepuce of clitoris- how is this different? ## Synonyms - * clitoral hood [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_hood] + * clitoral hood [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_hood ] * clitoral prepuce * clitoris prepuce - * prepuce of female [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + EMAPA:30699] + * prepuce of female [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = EMAPA:30699 ] * prepuce of the clitoris - * preputium clitoridis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Clitoral_hood] + * preputium clitoridis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Clitoral_hood ] ## Cross-references * EMAPA:30699 * FMA:20169 * SCTID:362242009 - * UMLS:C0227771 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Female_Prepuce] + * UMLS:C0227771 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Female_Prepuce ] * Wikipedia:Clitoral_hood * http://upload.wikimedia.org/wikipedia/commons/b/bd/Clitoris_outer_anatomy.gif * http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Clitoris_outer_anatomy.gif/200px-Clitoris_outer_anatomy.gif @@ -45,8 +45,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005399.md b/md/UBERON/99/UBERON_0005399.md index d7768bcb32..4f1ea8fa66 100644 --- a/md/UBERON/99/UBERON_0005399.md +++ b/md/UBERON/99/UBERON_0005399.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005399 * *Label* = male reproductive gland - * *Definition* = A sex gland that is part of a male reproductive system. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A sex gland that is part of a male reproductive system. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) and [sex gland](../../UBERON/37/UBERON_0003937.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005499.md b/md/UBERON/99/UBERON_0005499.md index 3f751a9534..5d88ae2995 100644 --- a/md/UBERON/99/UBERON_0005499.md +++ b/md/UBERON/99/UBERON_0005499.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005499 * *Label* = rhombomere 1 - * *Definition* = Hindbrain segment or neuromere 1. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001031] + * *Definition* = Hindbrain segment or neuromere 1. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001031 ] ## Synonyms - * r1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001031] + * r1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001031 ] ## Cross-references @@ -40,8 +40,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Hindbrain segment or neuromere. Kimmel et al, 1995.[TAO] * *[rhombomere number](../../UBPROP/11/UBPROP_0000111.md)* = 1 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005599.md b/md/UBERON/99/UBERON_0005599.md index ac1bd1f33f..4b5342c4d0 100644 --- a/md/UBERON/99/UBERON_0005599.md +++ b/md/UBERON/99/UBERON_0005599.md @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005699.md b/md/UBERON/99/UBERON_0005699.md index 3a6e28fbaa..0d79e1de67 100644 --- a/md/UBERON/99/UBERON_0005699.md +++ b/md/UBERON/99/UBERON_0005699.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005699 * *Label* = pedal digit 5 mesenchyme - * *Definition* = Mesenchyme that is part of a pedal digit 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = Mesenchyme that is part of a pedal digit 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * hind limb digit 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] - * foot digit 5 mesenchyme [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hind limb digit 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] + * foot digit 5 mesenchyme [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mesenchyme](../../UBERON/04/UBERON_0003104.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedal digit 5](../../UBERON/35/UBERON_0003635.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005799.md b/md/UBERON/99/UBERON_0005799.md index a5a2514099..02e5da0645 100644 --- a/md/UBERON/99/UBERON_0005799.md +++ b/md/UBERON/99/UBERON_0005799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005799 * *Label* = simplex uterus - * *Definition* = the simplex uterus has only one uterine chamber (primates) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.shsu.edu/~bio_mlt/Chap14.html] + * *Definition* = the simplex uterus has only one uterine chamber (primates) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.shsu.edu/~bio_mlt/Chap14.html ] ## Synonyms @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0005899.md b/md/UBERON/99/UBERON_0005899.md index d15d6276af..4db1536a95 100644 --- a/md/UBERON/99/UBERON_0005899.md +++ b/md/UBERON/99/UBERON_0005899.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0005899 * *Label* = pes bone - * *Definition* = A bone that is part of the pes skeleton [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A bone that is part of the pes skeleton [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms @@ -11,7 +11,7 @@ * bone of foot * bone of pedal skeleton * bone of pes - * foot bone [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0000643] + * foot bone [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0000643 ] ## Cross-references @@ -20,7 +20,7 @@ * MESH:A02.835.232.300 * OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA * SCTID:361371005 - * UMLS:C0016505 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Foot_Bone] + * UMLS:C0016505 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Foot_Bone ] * ncithesaurus:Foot_Bone ## Subsets @@ -35,7 +35,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pes](../../UBERON/87/UBERON_0002387.md) ## Other Logical Axioms @@ -43,8 +43,9 @@ ## Other Annotations * *[implements_design_pattern](../../UBPROP/06/UBPROP_0000006.md)* = http://purl.obolibrary.org/obo/uberon/references/reference_0000015 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0005899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006099.md b/md/UBERON/99/UBERON_0006099.md index 94e9d3bf6f..b271142737 100644 --- a/md/UBERON/99/UBERON_0006099.md +++ b/md/UBERON/99/UBERON_0006099.md @@ -3,29 +3,29 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006099 * *Label* = Brodmann (1909) area 1 - * *Definition* = . [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] + * *Definition* = . [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] ## Synonyms - * B09-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * BA1 [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * Brodmann (1909) area 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * Brodmann area 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * Brodmann's area 1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68597] - * area 1 of Brodmann [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68597] - * area 1 of Brodmann-1909 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * area postcentralis intermedia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * intermediate postcentral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1732] - * intermediate postcentral area [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:68597] - * B09-1 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1732[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * area 1 of Brodmann (guenon) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NeuroNames:1022] + * B09-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * BA1 [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * Brodmann (1909) area 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * Brodmann area 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * Brodmann's area 1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68597 ] + * area 1 of Brodmann [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68597 ] + * area 1 of Brodmann-1909 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * area postcentralis intermedia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * intermediate postcentral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1732 ] + * intermediate postcentral area [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:68597 ] + * B09-1 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:SumsDB_abbrevSource,NIF_GrossAnatomy:birnlex_1732, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * area 1 of Brodmann (guenon) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NeuroNames:1022 ] ## Cross-references * FMA:68597 * NIF_GrossAnatomy:birnlex_1732 - * NeuroNames:1022 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1732] - * UMLS:C1272523 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + NIF_GrossAnatomy:birnlex_1732] + * NeuroNames:1022 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1732 ] + * UMLS:C1272523 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = NIF_GrossAnatomy:birnlex_1732 ] ## Subsets @@ -43,8 +43,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006199.md b/md/UBERON/99/UBERON_0006199.md index fffc6c0379..6699ba9575 100644 --- a/md/UBERON/99/UBERON_0006199.md +++ b/md/UBERON/99/UBERON_0006199.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006199 * *Label* = posterior auricular vein - * *Definition* = The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_auricular_vein] + * *Definition* = The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_auricular_vein ] * *Comment* = AO notes: check placement of AO class ## Synonyms - * posterior auricular vein [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:50851] - * venae auricularis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_auricular_vein[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * posterior auricular vein [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:50851 ] + * venae auricularis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_auricular_vein, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:50851 * MA:0002090 * SCTID:150188002 - * UMLS:C0226544 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Posterior_Auricular_Vein] + * UMLS:C0226544 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Posterior_Auricular_Vein ] * Wikipedia:Posterior_auricular_vein * http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png * ncithesaurus:Posterior_Auricular_Vein @@ -37,8 +37,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006499.md b/md/UBERON/99/UBERON_0006499.md index c5dcdd772b..c796b8fcc2 100644 --- a/md/UBERON/99/UBERON_0006499.md +++ b/md/UBERON/99/UBERON_0006499.md @@ -3,20 +3,20 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006499 * *Label* = dorsal pes interosseous muscle - * *Definition* = In human anatomy, the dorsal interossei of the foot are four muscles situated between the metatarsal bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_interossei_of_the_foot] + * *Definition* = In human anatomy, the dorsal interossei of the foot are four muscles situated between the metatarsal bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_interossei_of_the_foot ] ## Synonyms - * dorsal foot interosseus muscle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MA:0002303] - * dorsal interosseous of foot [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:37457] + * dorsal foot interosseus muscle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MA:0002303 ] + * dorsal interosseous of foot [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:37457 ] * musculi interossei dorsalis pedis - * musculi interossei dorsalis pedis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Dorsal_interossei_of_the_foot[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * musculi interossei dorsalis pedis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Dorsal_interossei_of_the_foot, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references * FMA:37457 * MA:0002303 - * UMLS:C1744541 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Dorsal_Foot_Interosseous_Muscle] + * UMLS:C1744541 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Dorsal_Foot_Interosseous_Muscle ] * Wikipedia:Dorsal_interossei_of_the_foot * http://upload.wikimedia.org/wikipedia/commons/5/57/Gray446.png * ncithesaurus:Dorsal_Foot_Interosseous_Muscle @@ -39,8 +39,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006599.md b/md/UBERON/99/UBERON_0006599.md index 4976e1cd66..67ca9bf73f 100644 --- a/md/UBERON/99/UBERON_0006599.md +++ b/md/UBERON/99/UBERON_0006599.md @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006699.md b/md/UBERON/99/UBERON_0006699.md index 3f3747d69c..c480c5d3ee 100644 --- a/md/UBERON/99/UBERON_0006699.md +++ b/md/UBERON/99/UBERON_0006699.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006699 * *Label* = foramen cecum of tongue - * *Definition* = The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_cecum_%28tongue%29] + * *Definition* = The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_cecum_%28tongue%29 ] * *Comment* = consider merging with FC of thyroid ## Synonyms - * Morand's foramen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54828] - * foramen cecum of tongue [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54828] - * foramen of Morgagni [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54828] - * f. caecum linguae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Foramen_cecum_%28tongue%29[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * Morand's foramen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54828 ] + * foramen cecum of tongue [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54828 ] + * foramen of Morgagni [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54828 ] + * f. caecum linguae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Foramen_cecum_%28tongue%29, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -43,8 +43,9 @@ ## Other Annotations * *[homologous_in](../../core#homologous/in/core#homologous_in.md)* = http://purl.obolibrary.org/obo/NCBITaxon_7742 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0006799.md b/md/UBERON/99/UBERON_0006799.md index 0fe8a2ad9e..9fd9a2bd88 100644 --- a/md/UBERON/99/UBERON_0006799.md +++ b/md/UBERON/99/UBERON_0006799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0006799 * *Label* = glandular epithelium - * *Definition* = Epithelium composed of secretory cells. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Online_Medical_Dictionary:http://cancerweb.ncl.ac.uk/] + * *Definition* = Epithelium composed of secretory cells. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Online_Medical_Dictionary:http://cancerweb.ncl.ac.uk/ ] * *Comment* = Editor notes: consider splitting epithelium from epithelial tissue ## Synonyms @@ -12,8 +12,8 @@ ## Cross-references * BTO:0002991 - * UMLS:C0682578 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glandular_Epithelium] - * UMLS:C1708242 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Glandular_Epithelial_Tissue] + * UMLS:C0682578 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glandular_Epithelium ] + * UMLS:C1708242 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Glandular_Epithelial_Tissue ] * ncithesaurus:Glandular_Epithelial_Tissue * ncithesaurus:Glandular_Epithelium @@ -28,15 +28,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_part](../../BFO/51/BFO_0000051.md) some [glandular epithelial cell](../../CL/50/CL_0000150.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0006799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0007099.md b/md/UBERON/99/UBERON_0007099.md index b7256108a4..c6d9564382 100644 --- a/md/UBERON/99/UBERON_0007099.md +++ b/md/UBERON/99/UBERON_0007099.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007099 * *Label* = hyoid neural crest - * *Definition* = Cranial neural crest that migrates into the hyoid arch. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0007065] + * *Definition* = Cranial neural crest that migrates into the hyoid arch. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0007065 ] ## Synonyms - * hyoid crest [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:0000025] + * hyoid crest [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:0000025 ] ## Cross-references @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0007299.md b/md/UBERON/99/UBERON_0007299.md index 8b22cfd850..ec0bb11713 100644 --- a/md/UBERON/99/UBERON_0007299.md +++ b/md/UBERON/99/UBERON_0007299.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007299 * *Label* = choroid plexus of tectal ventricle - * *Definition* = A choroid plexus that is part of a cerebral aqueduct. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = A choroid plexus that is part of a cerebral aqueduct. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * choroid plexus tectal ventricle [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0001445] + * choroid plexus tectal ventricle [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0001445 ] ## Cross-references @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [choroid plexus](../../UBERON/86/UBERON_0001886.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain cerebral aqueduct](../../UBERON/89/UBERON_0002289.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0007499.md b/md/UBERON/99/UBERON_0007499.md index 7b597e0b41..a2a46060b6 100644 --- a/md/UBERON/99/UBERON_0007499.md +++ b/md/UBERON/99/UBERON_0007499.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007499 * *Label* = epithelial sac - * *Definition* = An epithelial tube that is open at one end only. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AEO:JB[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERONREF:0000001] + * *Definition* = An epithelial tube that is open at one end only. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AEO:JB, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERONREF:0000001 ] ## Synonyms @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [epithelium](../../UBERON/83/UBERON_0000483.md) and [has_quality](../../SIO/08/SIO_000008.md) some [saccular](../../PATO/87/PATO_0001987.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0007699.md b/md/UBERON/99/UBERON_0007699.md index 6bbfcf3343..6576d55209 100644 --- a/md/UBERON/99/UBERON_0007699.md +++ b/md/UBERON/99/UBERON_0007699.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007699 * *Label* = tract of spinal cord - * *Definition* = An axon tract that is part of a spinal cord. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An axon tract that is part of a spinal cord. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms - * spinal cord tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75683] + * spinal cord tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75683 ] ## Cross-references * FMA:75683 - * UMLS:C1519456 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Spinal_Cord_Tract] + * UMLS:C1519456 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Spinal_Cord_Tract ] * ncithesaurus:Spinal_Cord_Tract ## Subsets @@ -25,15 +25,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [axon tract](../../UBERON/18/UBERON_0001018.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spinal cord](../../UBERON/40/UBERON_0002240.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0007799.md b/md/UBERON/99/UBERON_0007799.md index 448841592e..5f4b9ac307 100644 --- a/md/UBERON/99/UBERON_0007799.md +++ b/md/UBERON/99/UBERON_0007799.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0007799 * *Label* = mixed dentition - * *Definition* = The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MESH:A14.254.229] + * *Definition* = The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MESH:A14.254.229 ] ## Synonyms - * transitional dentition [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GAID:1250] + * transitional dentition [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GAID:1250 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0007799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0008199.md b/md/UBERON/99/UBERON_0008199.md index 546f3debe6..3b54aa44bc 100644 --- a/md/UBERON/99/UBERON_0008199.md +++ b/md/UBERON/99/UBERON_0008199.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008199 * *Label* = chin - * *Definition* = Surface structure that is the anteriormost part of the lower jaw region. In humans, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0002254[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chin] + * *Definition* = Surface structure that is the anteriormost part of the lower jaw region. In humans, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0002254, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chin ] ## Synonyms - * mental part of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46495] - * mental region [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46495] - * mental region of face [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46495] - * regio mentalis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:46495[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * chins [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chin] - * mentum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Chin[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * mental part of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46495 ] + * mental region [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46495 ] + * mental region of face [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46495 ] + * regio mentalis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:46495, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * chins [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chin ] + * mentum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Chin, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -47,8 +47,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = Surface structure that is the anteriormost region of the lower jaw.[TAO] * *[has_relational_adjective](../../UBPROP/07/UBPROP_0000007.md)* = mental - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0008799.md b/md/UBERON/99/UBERON_0008799.md index 7825b3d54a..779d14343f 100644 --- a/md/UBERON/99/UBERON_0008799.md +++ b/md/UBERON/99/UBERON_0008799.md @@ -3,24 +3,24 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008799 * *Label* = transverse palatine fold - * *Definition* = a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/transverse-palatine-fold.html] + * *Definition* = a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/transverse-palatine-fold.html ] * *Comment* = note that this class refers to the singular and the FMA class refers to the set. In future this class may be split. ## Synonyms - * palatal rugae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0009652] - * palatine fold [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652] - * palatine rugae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * plica palatina transversa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/transverse-palatine-fold.html] - * plicae palatinae transversae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] - * ruga of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] - * ruga palatina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/transverse-palatine-fold.html] - * rugae of palate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * rugae palatinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * transverse palatine folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * transverse palatine folds set [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] - * transverse palatine ridge [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.drugs.com/dict/transverse-palatine-fold.html] - * set of transverse palatine folds [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:75652] + * palatal rugae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0009652 ] + * palatine fold [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652 ] + * palatine rugae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * plica palatina transversa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/transverse-palatine-fold.html ] + * plicae palatinae transversae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] + * ruga of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] + * ruga palatina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/transverse-palatine-fold.html ] + * rugae of palate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * rugae palatinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * transverse palatine folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * transverse palatine folds set [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] + * transverse palatine ridge [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.drugs.com/dict/transverse-palatine-fold.html ] + * set of transverse palatine folds [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:75652 ] ## Cross-references @@ -39,15 +39,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [hard palate](../../UBERON/16/UBERON_0003216.md) and [rugal fold](../../UBERON/90/UBERON_0008790.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0008999.md b/md/UBERON/99/UBERON_0008999.md index 3526277b38..a1b19ad6f1 100644 --- a/md/UBERON/99/UBERON_0008999.md +++ b/md/UBERON/99/UBERON_0008999.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0008999 * *Label* = hoof lamina - * *Definition* = The tissues which attach the third phalanx to the hoof wall. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003997] + * *Definition* = The tissues which attach the third phalanx to the hoof wall. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003997 ] ## Synonyms - * hoof laminae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BTO:0003997] + * hoof laminae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BTO:0003997 ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0008999 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0009099.md b/md/UBERON/99/UBERON_0009099.md index 9adf4d23cb..b06c2072af 100644 --- a/md/UBERON/99/UBERON_0009099.md +++ b/md/UBERON/99/UBERON_0009099.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009099 * *Label* = typhlosole - * *Definition* = an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Typhlosole[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/] + * *Definition* = an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Typhlosole, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/ ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0009199.md b/md/UBERON/99/UBERON_0009199.md index 0f99289512..2dae51a119 100644 --- a/md/UBERON/99/UBERON_0009199.md +++ b/md/UBERON/99/UBERON_0009199.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009199 * *Label* = facial suture - * *Definition* = any suture between facial bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + GO:0097096] + * *Definition* = any suture between facial bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = GO:0097096 ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectIntersectionOf(ObjectMinCardinality(2 ) ObjectMaxCardinality(2 ))) + * ObjectMaxCardinality(2 ) and ObjectMinCardinality(2 ) and [craniofacial suture](../../UBERON/98/UBERON_0009198.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0009499.md b/md/UBERON/99/UBERON_0009499.md index c71bd131a5..8fc79a9a9b 100644 --- a/md/UBERON/99/UBERON_0009499.md +++ b/md/UBERON/99/UBERON_0009499.md @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0009599.md b/md/UBERON/99/UBERON_0009599.md index 493cad86e8..9fa567685b 100644 --- a/md/UBERON/99/UBERON_0009599.md +++ b/md/UBERON/99/UBERON_0009599.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009599 * *Label* = mesenchyme of interdigital region between digits 4 and 5 - * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 4 and 5. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An interdigital region mesenchyme that is part of a interdigital region between digits 4 and 5. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [interdigital region mesenchyme](../../UBERON/85/UBERON_0009585.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interdigital region between digits 4 and 5](../../UBERON/25/UBERON_0006025.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0009899.md b/md/UBERON/99/UBERON_0009899.md index 7fb1ddfc6c..1df8e9656e 100644 --- a/md/UBERON/99/UBERON_0009899.md +++ b/md/UBERON/99/UBERON_0009899.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0009899 * *Label* = pole of cerebral hemisphere - * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Poles_of_cerebral_hemispheres] + * *Definition* = The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Poles_of_cerebral_hemispheres ] ## Synonyms @@ -31,8 +31,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0009899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0010299.md b/md/UBERON/99/UBERON_0010299.md index d5c4824b93..151e8545e7 100644 --- a/md/UBERON/99/UBERON_0010299.md +++ b/md/UBERON/99/UBERON_0010299.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010299 * *Label* = scleral mesenchyme - * *Definition* = Mesenchyme surrounding the developing optic cup which develops into the sclera. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + PMID:16496288[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = Mesenchyme surrounding the developing optic cup which develops into the sclera. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = PMID:16496288, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] * *Comment* = Development notes: The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. PMID:16496288 ## Synonyms @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0010399.md b/md/UBERON/99/UBERON_0010399.md index 30cca11026..8ee3d3830d 100644 --- a/md/UBERON/99/UBERON_0010399.md +++ b/md/UBERON/99/UBERON_0010399.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010399 * *Label* = spleen trabecular artery - * *Definition* = one of the branches of the splenic artery[MP] [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + MP:0002354[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Trabecular_arteries] + * *Definition* = one of the branches of the splenic artery[MP] [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = MP:0002354, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Trabecular_arteries ] ## Synonyms @@ -12,7 +12,7 @@ ## Cross-references * MA:0000759 - * UMLS:C1710159 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Splenic_Trabecular_Artery] + * UMLS:C1710159 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Splenic_Trabecular_Artery ] * Wikipedia:Trabecular_arteries * ncithesaurus:Splenic_Trabecular_Artery @@ -28,7 +28,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [artery](../../UBERON/37/UBERON_0001637.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trabecula of spleen](../../UBERON/65/UBERON_0001265.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = When the splenic artery passes into the trabecula of the spleen and branches, they become known as the trabecular arteries. When these arteries then reach the white pulp, and become covered with Periarteriolar lymphoid sheaths, the name changes again to central arteries (or central arterioles). Branches of the central arteries are given to the red pulp, and these are called penicillar arteries).[Wikipedia] - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0010499.md b/md/UBERON/99/UBERON_0010499.md index 77a86e3672..4a20997b12 100644 --- a/md/UBERON/99/UBERON_0010499.md +++ b/md/UBERON/99/UBERON_0010499.md @@ -3,16 +3,16 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010499 * *Label* = pseudostratified ciliated columnar epithelium - * *Definition* = Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCIT:NCIT] + * *Definition* = Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCIT:NCIT ] ## Synonyms - * epithelium pseudostratificatum columnare ciliatum (trachea et bronchi) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:13146] + * epithelium pseudostratificatum columnare ciliatum (trachea et bronchi) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:13146 ] ## Cross-references * FMA:13146 - * UMLS:C0506992 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium] + * UMLS:C0506992 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium ] * ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium ## Subsets @@ -26,15 +26,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [ciliated epithelial cell](../../CL/67/CL_0000067.md) and [pseudostratified columnar epithelium](../../UBERON/98/UBERON_0010498.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0010699.md b/md/UBERON/99/UBERON_0010699.md index fec7d499e6..b062fdf982 100644 --- a/md/UBERON/99/UBERON_0010699.md +++ b/md/UBERON/99/UBERON_0010699.md @@ -7,10 +7,10 @@ ## Synonyms * finger metacarpus cartilage element - * fore limb digit metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted] + * fore limb digit metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted ] * metacarpal cartilage element * metacarpus cartilage element - * hand digit metacarpus cartilage element [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NCBITaxon:9606[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:accepted[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#SENSU] + * hand digit metacarpus cartilage element [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NCBITaxon:9606, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:accepted, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#SENSU ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [composed_primarily_of](../../UBREL/02/UBREL_0000002.md) some [cartilage tissue](../../UBERON/18/UBERON_0002418.md) and [manual digit metacarpus endochondral element](../../UBERON/42/UBERON_0015042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0010899.md b/md/UBERON/99/UBERON_0010899.md index 9684a20277..2a09d37ca9 100644 --- a/md/UBERON/99/UBERON_0010899.md +++ b/md/UBERON/99/UBERON_0010899.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0010899 * *Label* = synchronous hermaphroditic organism - * *Definition* = Hermaphroditic organism that produces both male and female gametes at the same time. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000046] + * *Definition* = Hermaphroditic organism that produces both male and female gametes at the same time. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000046 ] ## Synonyms - * serially hermaphroditic organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + CARO:0000046] - * simultaneous hermaphroditic organism [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * serially hermaphroditic organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = CARO:0000046 ] + * simultaneous hermaphroditic organism [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Cross-references @@ -29,15 +29,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [has_part](../../BFO/51/BFO_0000051.md) some [female gonad](../../UBERON/92/UBERON_0000992.md) and [has_part](../../BFO/51/BFO_0000051.md) some [testis](../../UBERON/73/UBERON_0000473.md) and [multi-cellular organism](../../UBERON/68/UBERON_0000468.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0010899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0011199.md b/md/UBERON/99/UBERON_0011199.md index 33c64f4e41..bfb2c97b54 100644 --- a/md/UBERON/99/UBERON_0011199.md +++ b/md/UBERON/99/UBERON_0011199.md @@ -3,26 +3,26 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011199 * *Label* = prostatic utricle - * *Definition* = a small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts. It is also known as the vagina masculina or (in older literature) vesicula prostatica. It is often described as 'blind,' meaning that it is a duct that does not lead to any other structures. It can sometimes be enlarged. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_utricle] + * *Definition* = a small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts. It is also known as the vagina masculina or (in older literature) vesicula prostatica. It is often described as 'blind,' meaning that it is a duct that does not lead to any other structures. It can sometimes be enlarged. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_utricle ] * *Comment* = Editor notes: add df relations. Check mesopnephric duct ## Synonyms - * sinus pocularis [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19702] - * uterus masculinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19702] - * utricle of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19702] - * utriculus of prostate [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19702] - * vagina masculina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:19702] - * uterus masculinus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_utricle] - * utriculus prostaticus [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_utricle] - * vagina masculina [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_utricle] - * vesicula prostatica [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Prostatic_utricle] + * sinus pocularis [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19702 ] + * uterus masculinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19702 ] + * utricle of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19702 ] + * utriculus of prostate [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19702 ] + * vagina masculina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:19702 ] + * uterus masculinus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_utricle ] + * utriculus prostaticus [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_utricle ] + * vagina masculina [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_utricle ] + * vesicula prostatica [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Prostatic_utricle ] ## Cross-references * FMA:19702 * SCTID:197909004 - * UMLS:C0227736 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Prostatic_Utricle] + * UMLS:C0227736 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Prostatic_Utricle ] * Wikipedia:Prostatic_utricle * http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png * ncithesaurus:Prostatic_Utricle @@ -46,8 +46,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0011299.md b/md/UBERON/99/UBERON_0011299.md index efffb12ee0..238a5b734f 100644 --- a/md/UBERON/99/UBERON_0011299.md +++ b/md/UBERON/99/UBERON_0011299.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011299 * *Label* = white matter of telencephalon - * *Definition* = A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + https://orcid.org/0000-0002-6601-2165] + * *Definition* = A partion of white matter that is part of a telencephalon. This can be further subdivided in some species, for example, into hemisphere white matter and the corpus callosum. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = https://orcid.org/0000-0002-6601-2165 ] ## Synonyms - * telencephalic tract/commissure [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFA:0000597] - * telencephalic tracts [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000597] + * telencephalic tract/commissure [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFA:0000597 ] + * telencephalic tracts [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000597 ] ## Cross-references @@ -27,7 +27,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) and [white matter](../../UBERON/16/UBERON_0002316.md) ## Other Logical Axioms @@ -36,8 +36,9 @@ * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = CNS white matter that is part of the telencephalon[ZFA:0000597]. * *[has_alternative_id](../../Id/oboInOwl#hasAlternativeId.md)* = UBERON:0013202 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0011599.md b/md/UBERON/99/UBERON_0011599.md index f2f4e18da0..d486a0a4ed 100644 --- a/md/UBERON/99/UBERON_0011599.md +++ b/md/UBERON/99/UBERON_0011599.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011599 * *Label* = lenticular process of incus - * *Definition* = the long ventral process of the incus which articulates with the stapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com/vertebrates/glossary/glossaryJL.html] + * *Definition* = the long ventral process of the incus which articulates with the stapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com/vertebrates/glossary/glossaryJL.html ] * *Comment* = the lenticular process may be homologous to the shaft of the stapes and result from fusion of the former quadrate- stapes articulation. This speculation is consistent with the observation that artiodactyls have a very short lenticular process (Thewissen & Hussain (1993)), with perhaps greater length to the corresponding process of the stapes[http://palaeos.com/vertebrates/bones/ear/incus.html] ## Synonyms - * incus crus longum [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://palaeos.com] - * processus lenticularis (incus) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:52775] + * incus crus longum [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://palaeos.com ] + * processus lenticularis (incus) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:52775 ] * lenticular process * processus lenticularis @@ -27,7 +27,7 @@ * [bony projection](../../UBERON/30/UBERON_0004530.md) * [neural crest-derived structure](../../UBERON/13/UBERON_0010313.md) * [skeletal element projection](../../UBERON/00/UBERON_4100000.md) - * [part_of](../../BFO/50/BFO_0000050.md) some [incus](../../UBERON/88/UBERON_0001688.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [incus bone](../../UBERON/88/UBERON_0001688.md) * [develops from](../../RO/02/RO_0002202.md) some [2nd arch mesenchyme](../../UBERON/89/UBERON_0005689.md) ## Equivalencies @@ -38,8 +38,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0011799.md b/md/UBERON/99/UBERON_0011799.md index fd9c187d04..75900dac65 100644 --- a/md/UBERON/99/UBERON_0011799.md +++ b/md/UBERON/99/UBERON_0011799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011799 * *Label* = cavity of feather shaft - * *Definition* = An anatomical cavity that is part of a feather shaft. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + OBOL:automatic] + * *Definition* = An anatomical cavity that is part of a feather shaft. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = OBOL:automatic ] ## Synonyms @@ -21,15 +21,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical cavity](../../UBERON/53/UBERON_0002553.md) and [part_of](../../BFO/50/BFO_0000050.md) some [feather shaft](../../UBERON/84/UBERON_0011784.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0011899.md b/md/UBERON/99/UBERON_0011899.md index 8a3d8796bd..a41dbdcdf2 100644 --- a/md/UBERON/99/UBERON_0011899.md +++ b/md/UBERON/99/UBERON_0011899.md @@ -3,17 +3,17 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0011899 * *Label* = epimysium - * *Definition* = Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous. The Epimysium also protects muscles from friction against other muscles and bones. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epimysium] + * *Definition* = Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous. The Epimysium also protects muscles from friction against other muscles and bones. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epimysium ] ## Synonyms - * fascia of muscle organ [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:9726] - * epimysia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Epimysium[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * fascia of muscle organ [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:9726 ] + * epimysia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Epimysium, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references * FMA:9726 - * UMLS:C0504096 [[oboInOwl#source](../../ce/oboInOwl#source.md) = + ncithesaurus:Epimysium] + * UMLS:C0504096 [ [oboInOwl#source](../../ce/oboInOwl#source.md) = ncithesaurus:Epimysium ] * Wikipedia:Epimysium * ncithesaurus:Epimysium @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0011899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0012199.md b/md/UBERON/99/UBERON_0012199.md index ae8ae4f371..f948ea3b5c 100644 --- a/md/UBERON/99/UBERON_0012199.md +++ b/md/UBERON/99/UBERON_0012199.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0012199 * *Label* = posterior intercostal vein - * *Definition* = The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Posterior_intercostal_veins] + * *Definition* = The posterior intercostal veins are veins that drain the intercostal spaces posteriorly. They run with their corresponding posterior intercostal artery on the underside of the rib, the vein superior to the artery. Each vein also gives off a dorsal branch that drains blood from the muscles of the back. There are eleven posterior intercostal veins on each side. Their patterns are variable, but they are commonly arranged as: The 1st posterior intercostal vein, supreme intercostal vein, drains into the brachiocephalic vein or the vertebral vein. The 2nd and 3rd (and often 4th) posterior intercostal veins drain into the superior intercostal vein. The remaining posterior intercostal veins drain into the azygos vein on the right, or the hemiazygos vein on the left. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Posterior_intercostal_veins ] ## Synonyms - * venae intercostalis posterior [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:4858[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#LATIN] + * venae intercostalis posterior [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:4858, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#LATIN ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0012299.md b/md/UBERON/99/UBERON_0012299.md index 49593af75d..5018903e0a 100644 --- a/md/UBERON/99/UBERON_0012299.md +++ b/md/UBERON/99/UBERON_0012299.md @@ -6,9 +6,9 @@ ## Synonyms - * mucous membrane of urethra [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76904] - * tunica mucosa urethrae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * urethral mucosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:76904] + * mucous membrane of urethra [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76904 ] + * tunica mucosa urethrae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * urethral mucosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:76904 ] ## Cross-references @@ -27,15 +27,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [urethra](../../UBERON/57/UBERON_0000057.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012299 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0012399.md b/md/UBERON/99/UBERON_0012399.md index 005ca9baa4..62867e961a 100644 --- a/md/UBERON/99/UBERON_0012399.md +++ b/md/UBERON/99/UBERON_0012399.md @@ -6,7 +6,7 @@ ## Synonyms - * longitudinal muscle layer of zone of large intestine [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63637] + * longitudinal muscle layer of zone of large intestine [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63637 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [longitudinal muscle layer](../../UBERON/69/UBERON_0012369.md) and [part_of](../../BFO/50/BFO_0000050.md) some [large intestine smooth muscle](../../UBERON/20/UBERON_0004220.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0012499.md b/md/UBERON/99/UBERON_0012499.md index 153cc8e484..e8ea00ea73 100644 --- a/md/UBERON/99/UBERON_0012499.md +++ b/md/UBERON/99/UBERON_0012499.md @@ -6,13 +6,13 @@ ## Synonyms - * serosa of fallopian tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] - * serosa of oviduct [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] - * serous coat of uterine tube [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] - * tunica serosa (tuba uterina) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] - * tunica serosa tubae uterinae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:TA] - * uterine tubal serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] - * uterine tube serosa [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:18316] + * serosa of fallopian tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] + * serosa of oviduct [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] + * serous coat of uterine tube [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] + * tunica serosa (tuba uterina) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] + * tunica serosa tubae uterinae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:TA ] + * uterine tubal serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] + * uterine tube serosa [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:18316 ] ## Cross-references @@ -31,15 +31,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [fallopian tube](../../UBERON/89/UBERON_0003889.md) and [serous membrane](../../UBERON/42/UBERON_0000042.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0012499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0013199.md b/md/UBERON/99/UBERON_0013199.md index 13b8930903..5c24a7e315 100644 --- a/md/UBERON/99/UBERON_0013199.md +++ b/md/UBERON/99/UBERON_0013199.md @@ -6,10 +6,10 @@ ## Synonyms - * neuraxis stria [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:83854] - * neuraxis striae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * neuraxis stria [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:83854 ] + * neuraxis striae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] * stria - * striae [[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#PLURAL] + * striae [ [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#PLURAL ] ## Cross-references @@ -30,8 +30,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013199 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0013399.md b/md/UBERON/99/UBERON_0013399.md index 0e96ba6070..664f393961 100644 --- a/md/UBERON/99/UBERON_0013399.md +++ b/md/UBERON/99/UBERON_0013399.md @@ -6,12 +6,12 @@ ## Synonyms - * lamina vasculosa (choroid) [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] - * lamina vasculosa of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] - * outer layer of choroid proper [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] - * vessel layer of choroid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] - * Haller's layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] - * Sattler's layer [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:58435] + * lamina vasculosa (choroid) [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] + * lamina vasculosa of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] + * outer layer of choroid proper [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] + * vessel layer of choroid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] + * Haller's layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] + * Sattler's layer [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:58435 ] ## Cross-references @@ -36,8 +36,9 @@ ## Other Annotations * *[external_definition](../../UBPROP/01/UBPROP_0000001.md)* = a layer of medium-diameter blood vessels of the choroid, a layer of the eye[Wikipedia:Sattler's_layer]. - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0013499.md b/md/UBERON/99/UBERON_0013499.md index 13db94e33a..db7113a8b4 100644 --- a/md/UBERON/99/UBERON_0013499.md +++ b/md/UBERON/99/UBERON_0013499.md @@ -27,8 +27,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013499 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0013599.md b/md/UBERON/99/UBERON_0013599.md index 0aba4fe1c1..76c4018ae4 100644 --- a/md/UBERON/99/UBERON_0013599.md +++ b/md/UBERON/99/UBERON_0013599.md @@ -7,8 +7,8 @@ ## Synonyms * dorsal terminal nucleus of accessory optic tract - * dorsal terminal nucleus of the accessory optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ABA:DT] - * posterior accessory nucleus of optic tract [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:77651] + * dorsal terminal nucleus of the accessory optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ABA:DT ] + * posterior accessory nucleus of optic tract [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:77651 ] * posterior terminal nucleus of accessory optic tract ## Cross-references @@ -33,8 +33,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0013699.md b/md/UBERON/99/UBERON_0013699.md index 5e3759af3f..9a2fc4d277 100644 --- a/md/UBERON/99/UBERON_0013699.md +++ b/md/UBERON/99/UBERON_0013699.md @@ -7,8 +7,8 @@ ## Synonyms * axilla hair - * axillary hair [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54253] - * hair of axilla [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:54253] + * axillary hair [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54253 ] + * hair of axilla [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:54253 ] ## Cross-references @@ -25,7 +25,7 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [axilla](../../UBERON/72/UBERON_0009472.md) and [strand of hair](../../UBERON/37/UBERON_0001037.md) ## Other Logical Axioms @@ -33,8 +33,9 @@ ## Other Annotations * *[fma_set_term](../../core#fma/rm/core#fma_set_term.md)* = http://purl.obolibrary.org/obo/FMA_70756 - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0013699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0014399.md b/md/UBERON/99/UBERON_0014399.md index 5875a50c82..6a6727998d 100644 --- a/md/UBERON/99/UBERON_0014399.md +++ b/md/UBERON/99/UBERON_0014399.md @@ -6,8 +6,8 @@ ## Synonyms - * lumen of sinusoid [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63133] - * sinusoid lumen [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + FMA:63133] + * lumen of sinusoid [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63133 ] + * sinusoid lumen [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = FMA:63133 ] ## Cross-references @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [anatomical space](../../UBERON/64/UBERON_0000464.md) and [enclosed_by](../../core#enclosed/by/core#enclosed_by.md) some [sinusoid](../../UBERON/09/UBERON_0003909.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014399 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0014599.md b/md/UBERON/99/UBERON_0014599.md index 9ef16447aa..47d95f648e 100644 --- a/md/UBERON/99/UBERON_0014599.md +++ b/md/UBERON/99/UBERON_0014599.md @@ -6,11 +6,11 @@ ## Synonyms - * paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:birnlex_1384[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED] - * PVHam [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1384[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * paraventricular hypothalamic nucleus anterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHam] - * paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHam] - * paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + BAMS:PVHam] + * paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:birnlex_1384, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED ] + * PVHam [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = NIF_GrossAnatomy:Swanson-rat-1998_abbrevSource,NIF_GrossAnatomy:birnlex_1384, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * paraventricular hypothalamic nucleus anterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHam ] + * paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHam ] + * paraventricular nucleus of the hypothalamus, magnocellular division, anterior magnocellular part [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = BAMS:PVHam ] ## Cross-references @@ -34,8 +34,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014599 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0014699.md b/md/UBERON/99/UBERON_0014699.md index 616707937c..59176979e9 100644 --- a/md/UBERON/99/UBERON_0014699.md +++ b/md/UBERON/99/UBERON_0014699.md @@ -24,15 +24,16 @@ ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) + * [part_of](../../BFO/50/BFO_0000050.md) some [umbilical cord](../../UBERON/31/UBERON_0002331.md) and [venous system](../../UBERON/82/UBERON_0004582.md) ## Other Logical Axioms ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014699 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0014799.md b/md/UBERON/99/UBERON_0014799.md index 9e6bffbd68..e0819b88a4 100644 --- a/md/UBERON/99/UBERON_0014799.md +++ b/md/UBERON/99/UBERON_0014799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014799 * *Label* = acromiotrapezius muscle - * *Definition* = Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + http://en.wikipedia.org/wiki/Cat_anatomy#Acromiotrapezius] + * *Definition* = Acromiotrapezius is the middle trapezius muscle. It covers the dorsal and lateral surfaces of the scapula. Its origin is the neural spines of the cervical vertebrae and its insertion is in the metacromion process and fascia of the clavotrapezius. Its action is to draw the scapula to the dorsal, and hold the two scapula together. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = http://en.wikipedia.org/wiki/Cat_anatomy#Acromiotrapezius ] ## Synonyms @@ -29,8 +29,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014799 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0014899.md b/md/UBERON/99/UBERON_0014899.md index 3c6a20e274..7354f88414 100644 --- a/md/UBERON/99/UBERON_0014899.md +++ b/md/UBERON/99/UBERON_0014899.md @@ -3,15 +3,15 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_0014899 * *Label* = anterolateral ligament of knee - * *Definition* = a ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + Wikipedia:Anterolateral_ligament[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087] + * *Definition* = a ligament on the lateral aspect of the human knee, anterior to the fibular collateral ligament. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = Wikipedia:Anterolateral_ligament, [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087 ] ## Synonyms - * (mid-third) lateral capsular ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087] - * ALL [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION] - * anterolateral ligament [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087] - * capsulo-osseous layer of the iliotibial band [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087] - * ligament of Segond [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + doi:10.1111/joa.12087] + * (mid-third) lateral capsular ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087 ] + * ALL [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION ] + * anterolateral ligament [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087 ] + * capsulo-osseous layer of the iliotibial band [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087 ] + * ligament of Segond [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = doi:10.1111/joa.12087 ] ## Cross-references @@ -35,8 +35,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0014899 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_0015099.md b/md/UBERON/99/UBERON_0015099.md index 38b9cf10b3..d49b83f9b9 100644 --- a/md/UBERON/99/UBERON_0015099.md +++ b/md/UBERON/99/UBERON_0015099.md @@ -26,8 +26,9 @@ ## Other Annotations - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon - * *[oboInOwl#id](../../id/oboInOwl#id.md)* = UBERON:0015099 + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000199.md b/md/UBERON/99/UBERON_2000199.md index d7878e33b5..7dfcb06b7c 100644 --- a/md/UBERON/99/UBERON_2000199.md +++ b/md/UBERON/99/UBERON_2000199.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000299.md b/md/UBERON/99/UBERON_2000299.md index 9cabd7105f..830c107ff6 100644 --- a/md/UBERON/99/UBERON_2000299.md +++ b/md/UBERON/99/UBERON_2000299.md @@ -27,8 +27,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_2000399.md b/md/UBERON/99/UBERON_2000399.md index c188c3dc87..9c8bdcf54a 100644 --- a/md/UBERON/99/UBERON_2000399.md +++ b/md/UBERON/99/UBERON_2000399.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000499.md b/md/UBERON/99/UBERON_2000499.md index 20d162a29e..d8e84bce65 100644 --- a/md/UBERON/99/UBERON_2000499.md +++ b/md/UBERON/99/UBERON_2000499.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000599.md b/md/UBERON/99/UBERON_2000599.md index 27ef0cc01e..9f1e0b0e2c 100644 --- a/md/UBERON/99/UBERON_2000599.md +++ b/md/UBERON/99/UBERON_2000599.md @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000699.md b/md/UBERON/99/UBERON_2000699.md index 81394215a5..10f8041e31 100644 --- a/md/UBERON/99/UBERON_2000699.md +++ b/md/UBERON/99/UBERON_2000699.md @@ -3,13 +3,13 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000699 * *Label* = entopterygoid vertical strut - * *Definition* = Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] * *Comment* = Fink and Fink 1981, present in gymnotoids. ## Synonyms - * endopterygoid vertical strut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000699] - * mesopterygoid vertical strut [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000699] + * endopterygoid vertical strut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000699 ] + * mesopterygoid vertical strut [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000699 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2000799.md b/md/UBERON/99/UBERON_2000799.md index 74f8f70622..efc61b489f 100644 --- a/md/UBERON/99/UBERON_2000799.md +++ b/md/UBERON/99/UBERON_2000799.md @@ -6,7 +6,7 @@ ## Synonyms - * muscle pioneers somite 6 [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0000799[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * muscle pioneers somite 6 [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0000799, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_2000899.md b/md/UBERON/99/UBERON_2000899.md index ef6e19ca28..4b6e36208a 100644 --- a/md/UBERON/99/UBERON_2000899.md +++ b/md/UBERON/99/UBERON_2000899.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2000899 * *Label* = hypaxial region somite 29 - * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2001099.md b/md/UBERON/99/UBERON_2001099.md index 60eae27928..f8510afb05 100644 --- a/md/UBERON/99/UBERON_2001099.md +++ b/md/UBERON/99/UBERON_2001099.md @@ -6,7 +6,7 @@ ## Synonyms - * immature sensory hair cells posterior macula [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001099[has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = + http://purl.obolibrary.org/obo/core#PLURAL] + * immature sensory hair cells posterior macula [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001099, [has_synonym_type](../../pe/oboInOwl#hasSynonymType.md) = http://purl.obolibrary.org/obo/core#PLURAL ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_2001299.md b/md/UBERON/99/UBERON_2001299.md index 8b0a9518f0..13876df533 100644 --- a/md/UBERON/99/UBERON_2001299.md +++ b/md/UBERON/99/UBERON_2001299.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2001699.md b/md/UBERON/99/UBERON_2001699.md index e9e0b926fa..2371496818 100644 --- a/md/UBERON/99/UBERON_2001699.md +++ b/md/UBERON/99/UBERON_2001699.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001699 * *Label* = dorsal-fin stay - * *Definition* = Endochondral bone located posterior to the last dorsal fin pterygiophore. The dorsal fin stay is a median bone. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Endochondral bone located posterior to the last dorsal fin pterygiophore. The dorsal fin stay is a median bone. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * dorsal fin stay [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001699] + * dorsal fin stay [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001699 ] ## Cross-references @@ -32,7 +32,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2001799.md b/md/UBERON/99/UBERON_2001799.md index 5727dcd2cd..62469f555b 100644 --- a/md/UBERON/99/UBERON_2001799.md +++ b/md/UBERON/99/UBERON_2001799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001799 * *Label* = recessus lateralis - * *Definition* = Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004). [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004). [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2001899.md b/md/UBERON/99/UBERON_2001899.md index 11a967a547..c685636508 100644 --- a/md/UBERON/99/UBERON_2001899.md +++ b/md/UBERON/99/UBERON_2001899.md @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2001999.md b/md/UBERON/99/UBERON_2001999.md index e5999f69ff..1c8778ec84 100644 --- a/md/UBERON/99/UBERON_2001999.md +++ b/md/UBERON/99/UBERON_2001999.md @@ -3,12 +3,12 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2001999 * *Label* = posterior cleithral process - * *Definition* = Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms - * humeral process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001999] - * postcleithral process [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0001999] + * humeral process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001999 ] + * postcleithral process [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0001999 ] ## Cross-references @@ -34,7 +34,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2002099.md b/md/UBERON/99/UBERON_2002099.md index 078e153989..d970435223 100644 --- a/md/UBERON/99/UBERON_2002099.md +++ b/md/UBERON/99/UBERON_2002099.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002099 * *Label* = lateral line scale series - * *Definition* = Anatomical cluster that consists of more than one lateral line scale. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:wd] + * *Definition* = Anatomical cluster that consists of more than one lateral line scale. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:wd ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2002199.md b/md/UBERON/99/UBERON_2002199.md index 7e00ba4407..d16c338ff7 100644 --- a/md/UBERON/99/UBERON_2002199.md +++ b/md/UBERON/99/UBERON_2002199.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2002199 * *Label* = hindbrain commissure - * *Definition* = CNS white matter that crosses the midline within the hindbrain. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:ZDB-PUB-090417-11] + * *Definition* = CNS white matter that crosses the midline within the hindbrain. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:ZDB-PUB-090417-11 ] ## Synonyms @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2005099.md b/md/UBERON/99/UBERON_2005099.md index 896fcc327a..9abb5e0d2d 100644 --- a/md/UBERON/99/UBERON_2005099.md +++ b/md/UBERON/99/UBERON_2005099.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_2005099 * *Label* = ray vein - * *Definition* = Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + ZFIN:curator] + * *Definition* = Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = ZFIN:curator ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_2005199.md b/md/UBERON/99/UBERON_2005199.md index d1087fe3cd..8548bd7d6f 100644 --- a/md/UBERON/99/UBERON_2005199.md +++ b/md/UBERON/99/UBERON_2005199.md @@ -6,7 +6,7 @@ ## Synonyms - * rostral lateral 2 rostral interneuron [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + TAO:0005199] + * rostral lateral 2 rostral interneuron [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = TAO:0005199 ] ## Cross-references @@ -28,8 +28,10 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = teleost_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_3000099.md b/md/UBERON/99/UBERON_3000099.md index 137467dba9..999ebedd20 100644 --- a/md/UBERON/99/UBERON_3000099.md +++ b/md/UBERON/99/UBERON_3000099.md @@ -26,8 +26,10 @@ * *[consider](../../er/oboInOwl#consider.md)* = UBERON:0002384 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_3000399.md b/md/UBERON/99/UBERON_3000399.md index b2bb2de6e3..4b74388901 100644 --- a/md/UBERON/99/UBERON_3000399.md +++ b/md/UBERON/99/UBERON_3000399.md @@ -6,13 +6,13 @@ ## Synonyms - * extracolumellare [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * extrapediale [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * extraplectral [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * extrastapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * hyostapes [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * medio-stapedial [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] - * pars quadrata columellae [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3000399] + * extracolumellare [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * extrapediale [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * extraplectral [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * extrastapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * hyostapes [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * medio-stapedial [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] + * pars quadrata columellae [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3000399 ] ## Cross-references @@ -36,7 +36,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3000599.md b/md/UBERON/99/UBERON_3000599.md index fe9046d5c2..e36daaa2f2 100644 --- a/md/UBERON/99/UBERON_3000599.md +++ b/md/UBERON/99/UBERON_3000599.md @@ -30,7 +30,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3000799.md b/md/UBERON/99/UBERON_3000799.md index d38d3024f6..b7a32d0675 100644 --- a/md/UBERON/99/UBERON_3000799.md +++ b/md/UBERON/99/UBERON_3000799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3000799 * *Label* = cartilago paraglenoidalis - * *Definition* = Strip of cartilage that separates the coracoid from the scapula. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:LAP] + * *Definition* = Strip of cartilage that separates the coracoid from the scapula. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:LAP ] ## Synonyms @@ -29,7 +29,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3000999.md b/md/UBERON/99/UBERON_3000999.md index 1a693c1e00..cc2c232c31 100644 --- a/md/UBERON/99/UBERON_3000999.md +++ b/md/UBERON/99/UBERON_3000999.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3010099.md b/md/UBERON/99/UBERON_3010099.md index 28d8c27cb6..5513476984 100644 --- a/md/UBERON/99/UBERON_3010099.md +++ b/md/UBERON/99/UBERON_3010099.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010099 * *Label* = musculus rectus superior - * *Definition* = Cranial nerve III innervated; dorsal in the rectus group. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:EJS] + * *Definition* = Cranial nerve III innervated; dorsal in the rectus group. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:EJS ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3010299.md b/md/UBERON/99/UBERON_3010299.md index 19cf8feb3c..9d20ff7b40 100644 --- a/md/UBERON/99/UBERON_3010299.md +++ b/md/UBERON/99/UBERON_3010299.md @@ -3,11 +3,11 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010299 * *Label* = obsolete secondary oogonium - * *Definition* = A type of germ cell that results from the mitotic division of a primary oogonium. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + XAO:EJS] + * *Definition* = A type of germ cell that results from the mitotic division of a primary oogonium. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = XAO:EJS ] ## Synonyms - * secondary oogonia [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + UBERON:3010299] + * secondary oogonia [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = UBERON:3010299 ] ## Cross-references @@ -28,8 +28,10 @@ * *[term replaced by](../../IAO/01/IAO_0100001.md)* = CL:0000655 * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy * *[owl#deprecated](../../ed/owl#deprecated.md)* = true +## Usage + + ## External Comments diff --git a/md/UBERON/99/UBERON_3010499.md b/md/UBERON/99/UBERON_3010499.md index 6308e5ce19..087296fb91 100644 --- a/md/UBERON/99/UBERON_3010499.md +++ b/md/UBERON/99/UBERON_3010499.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010499 * *Label* = coeliaco-mesenteric artery - * *Definition* = This artery has many branches which supply blood to various organs in the viscus. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:BJB] + * *Definition* = This artery has many branches which supply blood to various organs in the viscus. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:BJB ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3010599.md b/md/UBERON/99/UBERON_3010599.md index ac98948a5d..b3b1536065 100644 --- a/md/UBERON/99/UBERON_3010599.md +++ b/md/UBERON/99/UBERON_3010599.md @@ -27,7 +27,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3010699.md b/md/UBERON/99/UBERON_3010699.md index 82a7351c9e..4c2a5f8979 100644 --- a/md/UBERON/99/UBERON_3010699.md +++ b/md/UBERON/99/UBERON_3010699.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010699 * *Label* = m. serratus inferior - * *Definition* = Muscle which originates as a posterior and anterior head. The posterior head originates from the transverse process and cartilaginous epiphysis of presacral vertebra IV. The anterior head originates on the same parts of presacral vertebrae III. Both insert on the medial surface of the suprascapula near its postero-ventral edge. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:MEJ] + * *Definition* = Muscle which originates as a posterior and anterior head. The posterior head originates from the transverse process and cartilaginous epiphysis of presacral vertebra IV. The anterior head originates on the same parts of presacral vertebrae III. Both insert on the medial surface of the suprascapula near its postero-ventral edge. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:MEJ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_3010799.md b/md/UBERON/99/UBERON_3010799.md index 383b3854e6..7dc4617179 100644 --- a/md/UBERON/99/UBERON_3010799.md +++ b/md/UBERON/99/UBERON_3010799.md @@ -3,7 +3,7 @@ * *IRI* = http://purl.obolibrary.org/obo/UBERON_3010799 * *Label* = ramulus suprabranchialis posterior - * *Definition* = Ramulus innervating the suprabranchial line of neuromasts. [[database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = + AAO:SIQ] + * *Definition* = Ramulus innervating the suprabranchial line of neuromasts. [ [database_cross_reference](../../ef/oboInOwl#hasDbXref.md) = AAO:SIQ ] ## Synonyms @@ -28,7 +28,9 @@ * *[core#provenance_notes](../../core#provenance/es/core#provenance_notes.md)* = This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = amphibian_anatomy_curators - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = uberon/phenoscape-anatomy + +## Usage + ## External Comments diff --git a/md/UBERON/99/UBERON_4200099.md b/md/UBERON/99/UBERON_4200099.md index b37c4fca31..bb8acabf90 100644 --- a/md/UBERON/99/UBERON_4200099.md +++ b/md/UBERON/99/UBERON_4200099.md @@ -27,7 +27,9 @@ ## Other Annotations * *[oboInOwl#created_by](../../oboInOwl#created/by/oboInOwl#created_by.md)* = AD - * *[has_obo_namespace](../../ce/oboInOwl#hasOBONamespace.md)* = none + +## Usage + ## External Comments diff --git a/md/XAO/32/XAO_0000332.md b/md/XAO/32/XAO_0000332.md index 9d5a2ef6f4..78f8eda1fc 100644 --- a/md/XAO/32/XAO_0000332.md +++ b/md/XAO/32/XAO_0000332.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ZFA/00/ZFA_0001200.md b/md/ZFA/00/ZFA_0001200.md index 164ec5f9ad..c52bd2a982 100644 --- a/md/ZFA/00/ZFA_0001200.md +++ b/md/ZFA/00/ZFA_0001200.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ZFA/81/ZFA_0005581.md b/md/ZFA/81/ZFA_0005581.md index f36a900750..7934197ff2 100644 --- a/md/ZFA/81/ZFA_0005581.md +++ b/md/ZFA/81/ZFA_0005581.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ZFA/98/ZFA_0000398.md b/md/ZFA/98/ZFA_0000398.md index c8fb394ec6..55a4fbd4d3 100644 --- a/md/ZFA/98/ZFA_0000398.md +++ b/md/ZFA/98/ZFA_0000398.md @@ -24,5 +24,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/biological/ng/biological_modeling.md b/md/biological/ng/biological_modeling.md index e7bfcedf77..a863e5a79f 100644 --- a/md/biological/ng/biological_modeling.md +++ b/md/biological/ng/biological_modeling.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = Documentation describing how a specific piece of biology is represented in the ontology +## Usage + + ## External Comments diff --git a/md/description/ng/description_of_a_meeting.md b/md/description/ng/description_of_a_meeting.md index e7200d4a95..dbd38916f9 100644 --- a/md/description/ng/description_of_a_meeting.md +++ b/md/description/ng/description_of_a_meeting.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = Some combination of: a meeting report, meeting minutes or a description of the outcomes of a meeting +## Usage + + ## External Comments diff --git a/md/metadata/on/metadata_description.md b/md/metadata/on/metadata_description.md index b202c06806..befce358dd 100644 --- a/md/metadata/on/metadata_description.md +++ b/md/metadata/on/metadata_description.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = Documentation describing the metadata or metadata best practices used in an ontology +## Usage + + ## External Comments diff --git a/md/ng/owl#Nothing.md b/md/ng/owl#Nothing.md index 123adf2421..9b80ff1e88 100644 --- a/md/ng/owl#Nothing.md +++ b/md/ng/owl#Nothing.md @@ -319,543 +319,543 @@ * [in taxon](../../RO/62/RO_0002162.md) some [Phocidae](../../NCBITaxon/09/NCBITaxon_9709.md) * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_9816](../../NCBITaxon/16/NCBITaxon_9816.md) * [in taxon](../../RO/62/RO_0002162.md) some [Sus](../../NCBITaxon/22/NCBITaxon_9822.md) - * [connected to](../../UBREL/01/UBREL_0000001.md) some ObjectSomeValuesFrom( ) - * [connected to](../../UBREL/01/UBREL_0000001.md) some ObjectSomeValuesFrom( ) - * [connected to](../../UBREL/01/UBREL_0000001.md) some ObjectSomeValuesFrom( ) - * [connected to](../../UBREL/01/UBREL_0000001.md) some ObjectSomeValuesFrom( ) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [forelimb skeleton](../../UBERON/40/UBERON_0001440.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb skeleton](../../UBERON/41/UBERON_0001441.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage skeleton](../../UBERON/72/UBERON_0007272.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage skeleton](../../UBERON/73/UBERON_0007273.md) ## Equivalencies - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( ObjectSomeValuesFrom( )) - * ObjectIntersectionOf( 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ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * 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ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) - * ObjectIntersectionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) + * [in taxon](../../RO/62/RO_0002162.md) some [Serpentes](../../NCBITaxon/70/NCBITaxon_8570.md) and [lymph node](../../UBERON/29/UBERON_0000029.md) + * [Leydig's organ](../../UBERON/40/UBERON_0000040.md) and [in taxon](../../RO/62/RO_0002162.md) some [Holocephali](../../NCBITaxon/63/NCBITaxon_7863.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_110815](../../NCBITaxon/15/NCBITaxon_110815.md) and [organ](../../UBERON/62/UBERON_0000062.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Amniota](../../NCBITaxon/24/NCBITaxon_32524.md) and [larval stage](../../UBERON/69/UBERON_0000069.md) + * [apocrine sweat gland](../../UBERON/82/UBERON_0000382.md) and [in taxon](../../RO/62/RO_0002162.md) some [Sus](../../NCBITaxon/22/NCBITaxon_9822.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Porifera](../../NCBITaxon/40/NCBITaxon_6040.md) and [musculature of body](../../UBERON/83/UBERON_0000383.md) + * [epiglottis](../../UBERON/88/UBERON_0000388.md) and [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Porifera](../../NCBITaxon/40/NCBITaxon_6040.md) and [mesoderm](../../UBERON/26/UBERON_0000926.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Chordata](../../NCBITaxon/11/NCBITaxon_7711.md) and [ventral nerve cord](../../UBERON/34/UBERON_0000934.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Chimaeriformes](../../NCBITaxon/64/NCBITaxon_7864.md) and [stomach](../../UBERON/45/UBERON_0000945.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Dipnoi](../../NCBITaxon/78/NCBITaxon_7878.md) and [stomach](../../UBERON/45/UBERON_0000945.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Danio rerio](../../NCBITaxon/55/NCBITaxon_7955.md) and [stomach](../../UBERON/45/UBERON_0000945.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Ornithorhynchus](../../NCBITaxon/57/NCBITaxon_9257.md) and [stomach](../../UBERON/45/UBERON_0000945.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_9259](../../NCBITaxon/59/NCBITaxon_9259.md) and [stomach](../../UBERON/45/UBERON_0000945.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Arthropoda](../../NCBITaxon/56/NCBITaxon_6656.md) and [retina](../../UBERON/66/UBERON_0000966.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Serpentes](../../NCBITaxon/70/NCBITaxon_8570.md) and [sternum](../../UBERON/75/UBERON_0000975.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) and [respiratory system](../../UBERON/04/UBERON_0001004.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_110815](../../NCBITaxon/15/NCBITaxon_110815.md) and [renal system](../../UBERON/08/UBERON_0001008.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) and [renal system](../../UBERON/08/UBERON_0001008.md) + * [circulatory system](../../UBERON/09/UBERON_0001009.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) + * [circulatory system](../../UBERON/09/UBERON_0001009.md) and [in taxon](../../RO/62/RO_0002162.md) some [Cnidaria](../../NCBITaxon/73/NCBITaxon_6073.md) + * [circulatory system](../../UBERON/09/UBERON_0001009.md) and [in taxon](../../RO/62/RO_0002162.md) some [Platyhelminthes](../../NCBITaxon/57/NCBITaxon_6157.md) + * [central nervous system](../../UBERON/17/UBERON_0001017.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_6217](../../NCBITaxon/17/NCBITaxon_6217.md) and [mushroom body](../../UBERON/58/UBERON_0001058.md) + * [calcareous tooth](../../UBERON/91/UBERON_0001091.md) and [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) + * [diaphragm](../../UBERON/03/UBERON_0001103.md) and [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Myxinidae](../../NCBITaxon/62/NCBITaxon_7762.md) and [vertebral column](../../UBERON/30/UBERON_0001130.md) + * [caecum](../../UBERON/53/UBERON_0001153.md) and [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) + * [ilium](../../UBERON/73/UBERON_0001273.md) and [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Canis](../../NCBITaxon/11/NCBITaxon_9611.md) and [soleus muscle](../../UBERON/89/UBERON_0001389.md) + * [digestive tract](../../UBERON/55/UBERON_0001555.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) + * [digestive tract](../../UBERON/55/UBERON_0001555.md) and [in taxon](../../RO/62/RO_0002162.md) some [Siboglinidae](../../NCBITaxon/24/NCBITaxon_41324.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Ostariophysi](../../NCBITaxon/19/NCBITaxon_32519.md) and [palatine bone](../../UBERON/82/UBERON_0001682.md) + * [external ear](../../UBERON/91/UBERON_0001691.md) and [in taxon](../../RO/62/RO_0002162.md) some [Phocidae](../../NCBITaxon/09/NCBITaxon_9709.md) + * [enamel](../../UBERON/52/UBERON_0001752.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_9359](../../NCBITaxon/59/NCBITaxon_9359.md) + * [enamel](../../UBERON/52/UBERON_0001752.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_9816](../../NCBITaxon/16/NCBITaxon_9816.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) and [lip](../../UBERON/33/UBERON_0001833.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_7745](../../NCBITaxon/45/NCBITaxon_7745.md) and [pair of nares](../../UBERON/09/UBERON_0002109.md) + * [gallbladder](../../UBERON/10/UBERON_0002110.md) and [in taxon](../../RO/62/RO_0002162.md) some [Rattus](../../NCBITaxon/14/NCBITaxon_10114.md) + * [bronchus](../../UBERON/85/UBERON_0002185.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_8507](../../NCBITaxon/07/NCBITaxon_8507.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Tunicata](../../NCBITaxon/12/NCBITaxon_7712.md) and [somite](../../UBERON/29/UBERON_0002329.md) + * [corpus callosum](../../UBERON/36/UBERON_0002336.md) and [in taxon](../../RO/62/RO_0002162.md) some [Monotremata](../../NCBITaxon/55/NCBITaxon_9255.md) + * [dura mater](../../UBERON/63/UBERON_0002363.md) and [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) and [pars intermedia of adenohypophysis](../../UBERON/32/UBERON_0002432.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Danio rerio](../../NCBITaxon/55/NCBITaxon_7955.md) and [pars tuberalis of adenohypophysis](../../UBERON/33/UBERON_0002433.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) and [paired fin](../../UBERON/34/UBERON_0002534.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Amniota](../../NCBITaxon/24/NCBITaxon_32524.md) and [lateral line system](../../UBERON/40/UBERON_0002540.md) + * [dermatocranium](../../UBERON/13/UBERON_0003113.md) and [in taxon](../../RO/62/RO_0002162.md) some [Chondrichthyes](../../NCBITaxon/77/NCBITaxon_7777.md) + * [cuspid](../../UBERON/74/UBERON_0003674.md) and [in taxon](../../RO/62/RO_0002162.md) some [Muroidea](../../NCBITaxon/87/NCBITaxon_337687.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [placenta labyrinth](../../UBERON/46/UBERON_0003946.md) + * [Harderian gland](../../UBERON/87/UBERON_0004187.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [cleithrum](../../UBERON/41/UBERON_0004741.md) and [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) + * [coracoid bone](../../UBERON/43/UBERON_0004743.md) and [in taxon](../../RO/62/RO_0002162.md) some [Theria ](../../NCBITaxon/25/NCBITaxon_32525.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Macropus rufus](../../NCBITaxon/21/NCBITaxon_9321.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Primates](../../NCBITaxon/43/NCBITaxon_9443.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Sus](../../NCBITaxon/22/NCBITaxon_9822.md) and [tapetum lucidum](../../UBERON/68/UBERON_0004868.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) and [tooth enamel organ](../../UBERON/76/UBERON_0005176.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [male preputial gland](../../UBERON/01/UBERON_0005301.md) + * [female preputial gland](../../UBERON/02/UBERON_0005302.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [copula pyramidis](../../UBERON/47/UBERON_0005347.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Takifugu rubripes](../../NCBITaxon/33/NCBITaxon_31033.md) and [pelvic appendage bud](../../UBERON/20/UBERON_0005420.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [os penis](../../UBERON/35/UBERON_0006435.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [os clitoris](../../UBERON/40/UBERON_0006440.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) and [statolith](../../UBERON/82/UBERON_0006582.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) and [statocyst](../../UBERON/83/UBERON_0006583.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [quadrate bone](../../UBERON/97/UBERON_0006597.md) + * [horn](../../UBERON/67/UBERON_0006967.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Muroidea](../../NCBITaxon/87/NCBITaxon_337687.md) and [premolar tooth](../../UBERON/20/UBERON_0007120.md) + * [extensor digitorum lateralis muscle](../../UBERON/13/UBERON_0007613.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [prostate gland ventral lobe](../../UBERON/15/UBERON_0007615.md) + * [bone of reproductive structure](../../UBERON/19/UBERON_0007719.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [sclerotic ring](../../UBERON/04/UBERON_0007804.md) + * [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_8827](../../NCBITaxon/27/NCBITaxon_8827.md) and [uncinate process of ribs](../../UBERON/43/UBERON_0007843.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) and [oral surface](../../UBERON/58/UBERON_0008258.md) + * [aboral surface](../../UBERON/59/UBERON_0008259.md) and [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) and [pharyngeal slit](../../UBERON/15/UBERON_0008815.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Primates](../../NCBITaxon/43/NCBITaxon_9443.md) and [placenta metrial gland](../../UBERON/55/UBERON_0008855.md) + * [fin](../../UBERON/97/UBERON_0008897.md) and [in taxon](../../RO/62/RO_0002162.md) some [Aves](../../NCBITaxon/82/NCBITaxon_8782.md) + * [ampulla of Lorenzini](../../UBERON/18/UBERON_0008918.md) and [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) + * [ampulla of Lorenzini](../../UBERON/18/UBERON_0008918.md) and [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mus ](../../NCBITaxon/88/NCBITaxon_10088.md) and [upper lobe of left lung](../../UBERON/52/UBERON_0008952.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mus ](../../NCBITaxon/88/NCBITaxon_10088.md) and [lower lobe of left lung](../../UBERON/53/UBERON_0008953.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mus ](../../NCBITaxon/88/NCBITaxon_10088.md) and [lingula of left lung](../../UBERON/54/UBERON_0008954.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Amniota](../../NCBITaxon/24/NCBITaxon_32524.md) and [lateral line placode](../../UBERON/28/UBERON_0009128.md) + * [hypothalamo-hypophyseal system](../../UBERON/76/UBERON_0009976.md) and [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) + * [epigonal organ](../../UBERON/14/UBERON_0010014.md) and [in taxon](../../RO/62/RO_0002162.md) some [Holocephali](../../NCBITaxon/63/NCBITaxon_7863.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) and [spiral valve of intestine](../../UBERON/16/UBERON_0010016.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Amniota](../../NCBITaxon/24/NCBITaxon_32524.md) and [spiral valve of conus arteriosus](../../UBERON/18/UBERON_0010018.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) and [spiracle](../../UBERON/19/UBERON_0010019.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [renal portal system](../../UBERON/95/UBERON_0010195.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [nictitating membrane](../../UBERON/07/UBERON_0010207.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Euarchontoglires](../../NCBITaxon/46/NCBITaxon_314146.md) and [torus pylorus](../../UBERON/38/UBERON_0010238.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [musculus retractor bulbi](../../UBERON/71/UBERON_0010271.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Theria ](../../NCBITaxon/25/NCBITaxon_32525.md) and [scleral cartilage](../../UBERON/89/UBERON_0010289.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Chondrichthyes](../../NCBITaxon/77/NCBITaxon_7777.md) and [scleral ossicle](../../UBERON/90/UBERON_0010290.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Dipnoi](../../NCBITaxon/78/NCBITaxon_7878.md) and [scleral ossicle](../../UBERON/90/UBERON_0010290.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [scleral skeletal element](../../UBERON/96/UBERON_0010296.md) + * [endochondral scleral ossicle](../../UBERON/97/UBERON_0010297.md) and [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Teleostei](../../NCBITaxon/43/NCBITaxon_32443.md) and [intramembranous scleral ossicle](../../UBERON/98/UBERON_0010298.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Theria ](../../NCBITaxon/25/NCBITaxon_32525.md) and [quadrate-articular joint](../../UBERON/70/UBERON_0011170.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [rhinarium](../../UBERON/56/UBERON_0011256.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [quadratojugal bone](../../UBERON/67/UBERON_0011267.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Squamata](../../NCBITaxon/09/NCBITaxon_8509.md) and [quadratojugal bone](../../UBERON/67/UBERON_0011267.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [sublingua](../../UBERON/68/UBERON_0011268.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Tetrapoda](../../NCBITaxon/23/NCBITaxon_32523.md) and [urophysis](../../UBERON/59/UBERON_0011359.md) + * [coelom](../../UBERON/97/UBERON_0011997.md) and [in taxon](../../RO/62/RO_0002162.md) some [NCBITaxon_147099](../../NCBITaxon/99/NCBITaxon_147099.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [penile spine](../../UBERON/28/UBERON_0012328.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) and [oral cirrus](../../UBERON/73/UBERON_0012473.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) and [vaginal sphincter](../../UBERON/87/UBERON_0012487.md) + * [forelimb epitrochlearis muscle](../../UBERON/20/UBERON_0012520.md) and [in taxon](../../RO/62/RO_0002162.md) some [Homo sapiens](../../NCBITaxon/06/NCBITaxon_9606.md) + * [cocoon](../../UBERON/98/UBERON_0013198.md) and [in taxon](../../RO/62/RO_0002162.md) some [Papilionoidea](../../NCBITaxon/72/NCBITaxon_37572.md) + * [epipubic bone](../../UBERON/04/UBERON_0013204.md) and [in taxon](../../RO/62/RO_0002162.md) some [Euarchontoglires](../../NCBITaxon/46/NCBITaxon_314146.md) + * [ambiens muscle](../../UBERON/11/UBERON_0013511.md) and [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) + * [basilar papilla](../../UBERON/31/UBERON_0013731.md) and [in taxon](../../RO/62/RO_0002162.md) some [Mammalia](../../NCBITaxon/74/NCBITaxon_40674.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Elasmobranchii](../../NCBITaxon/78/NCBITaxon_7778.md) and [rib skeletal system](../../UBERON/78/UBERON_0014478.md) + * [in taxon](../../RO/62/RO_0002162.md) some [Vertebrata ](../../NCBITaxon/42/NCBITaxon_7742.md) and [somatic muscle](../../UBERON/95/UBERON_0014895.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [mucosa](../../UBERON/44/UBERON_0000344.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submucosa](../../UBERON/09/UBERON_0000009.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submucosa](../../UBERON/09/UBERON_0000009.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [appendage](../../UBERON/26/UBERON_0000026.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) and [part_of](../../BFO/50/BFO_0000050.md) some [heart](../../UBERON/48/UBERON_0000948.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [head](../../UBERON/33/UBERON_0000033.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trunk](../../UBERON/00/UBERON_0002100.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [external ectoderm](../../UBERON/76/UBERON_0000076.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neurectoderm](../../UBERON/46/UBERON_0002346.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [male reproductive system](../../UBERON/79/UBERON_0000079.md) and [part_of](../../BFO/50/BFO_0000050.md) some [spermathecum](../../UBERON/94/UBERON_0000994.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [intestine](../../UBERON/60/UBERON_0000160.md) and [part_of](../../BFO/50/BFO_0000050.md) some [kidney](../../UBERON/13/UBERON_0002113.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abdominal segment of trunk](../../UBERON/17/UBERON_0002417.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thoracic segment of trunk](../../UBERON/15/UBERON_0000915.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abdomen](../../UBERON/16/UBERON_0000916.md) and [part_of](../../BFO/50/BFO_0000050.md) some [chest](../../UBERON/43/UBERON_0001443.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [musculature](../../UBERON/15/UBERON_0001015.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [copula pyramidis](../../UBERON/47/UBERON_0005347.md) and [part_of](../../BFO/50/BFO_0000050.md) some [flocculus](../../UBERON/63/UBERON_0001063.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ansiform lobule](../../UBERON/48/UBERON_0005348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [flocculus](../../UBERON/63/UBERON_0001063.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [flocculus](../../UBERON/63/UBERON_0001063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paramedian lobule](../../UBERON/49/UBERON_0005349.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [flocculus](../../UBERON/63/UBERON_0001063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobule simplex](../../UBERON/50/UBERON_0005350.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [flocculus](../../UBERON/63/UBERON_0001063.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraflocculus](../../UBERON/51/UBERON_0005351.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral girdle region](../../UBERON/21/UBERON_0001421.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic girdle region](../../UBERON/71/UBERON_0001271.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [diaphysis proper](../../UBERON/61/UBERON_0006861.md) and [part_of](../../BFO/50/BFO_0000050.md) some [metaphysis](../../UBERON/38/UBERON_0001438.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb skeleton](../../UBERON/41/UBERON_0001441.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forelimb skeleton](../../UBERON/40/UBERON_0001440.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [forelimb skeleton](../../UBERON/40/UBERON_0001440.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb skeleton](../../UBERON/41/UBERON_0001441.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [muscle organ](../../UBERON/30/UBERON_0001630.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [bone element](../../UBERON/74/UBERON_0001474.md) and [part_of](../../BFO/50/BFO_0000050.md) some [muscle tissue](../../UBERON/85/UBERON_0002385.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower respiratory tract](../../UBERON/58/UBERON_0001558.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper respiratory tract](../../UBERON/57/UBERON_0001557.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lower jaw region](../../UBERON/10/UBERON_0001710.md) and [part_of](../../BFO/50/BFO_0000050.md) some [upper jaw region](../../UBERON/09/UBERON_0001709.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oculomotor nuclear complex](../../UBERON/15/UBERON_0001715.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus ambiguus](../../UBERON/19/UBERON_0001719.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior vestibular nucleus](../../UBERON/21/UBERON_0001721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial vestibular nucleus](../../UBERON/22/UBERON_0001722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior vestibular nucleus](../../UBERON/21/UBERON_0001721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior vestibular nucleus](../../UBERON/27/UBERON_0007227.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior vestibular nucleus](../../UBERON/21/UBERON_0001721.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral vestibular nucleus](../../UBERON/30/UBERON_0007230.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial vestibular nucleus](../../UBERON/22/UBERON_0001722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior vestibular nucleus](../../UBERON/27/UBERON_0007227.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral vestibular nucleus](../../UBERON/30/UBERON_0007230.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial vestibular nucleus](../../UBERON/22/UBERON_0001722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral septal nucleus](../../UBERON/67/UBERON_0002667.md) and [part_of](../../BFO/50/BFO_0000050.md) some [septofimbrial nucleus](../../UBERON/78/UBERON_0001878.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [septofimbrial nucleus](../../UBERON/78/UBERON_0001878.md) and [part_of](../../BFO/50/BFO_0000050.md) some [septohippocampal nucleus](../../UBERON/30/UBERON_0007630.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus accumbens](../../UBERON/82/UBERON_0001882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory tubercle](../../UBERON/83/UBERON_0001883.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Ammon's horn](../../UBERON/54/UBERON_0001954.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dentate gyrus of hippocampal formation](../../UBERON/85/UBERON_0001885.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dentate gyrus of hippocampal formation](../../UBERON/85/UBERON_0001885.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fasciolar gyrus](../../UBERON/01/UBERON_0002601.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [brainstem](../../UBERON/98/UBERON_0002298.md) and [part_of](../../BFO/50/BFO_0000050.md) some [forebrain](../../UBERON/90/UBERON_0001890.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum](../../UBERON/37/UBERON_0002037.md) and [part_of](../../BFO/50/BFO_0000050.md) some [telencephalon](../../UBERON/93/UBERON_0001893.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [diencephalon](../../UBERON/94/UBERON_0001894.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindbrain](../../UBERON/28/UBERON_0002028.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal plus ventral thalamus](../../UBERON/97/UBERON_0001897.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypothalamus](../../UBERON/98/UBERON_0001898.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithalamus](../../UBERON/99/UBERON_0001899.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thalamic reticular nucleus](../../UBERON/03/UBERON_0001903.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithalamus](../../UBERON/99/UBERON_0001899.md) and [part_of](../../BFO/50/BFO_0000050.md) some [intralaminar nuclear group](../../UBERON/33/UBERON_0002733.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [epithalamus](../../UBERON/99/UBERON_0001899.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral nuclear group](../../UBERON/36/UBERON_0002736.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [intralaminar nuclear group](../../UBERON/33/UBERON_0002733.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thalamic reticular nucleus](../../UBERON/03/UBERON_0001903.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral nuclear group](../../UBERON/36/UBERON_0002736.md) and [part_of](../../BFO/50/BFO_0000050.md) some [thalamic reticular nucleus](../../UBERON/03/UBERON_0001903.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral habenular nucleus](../../UBERON/41/UBERON_0001941.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pineal body](../../UBERON/05/UBERON_0001905.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial habenular nucleus](../../UBERON/42/UBERON_0001942.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pineal body](../../UBERON/05/UBERON_0001905.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subthalamic nucleus](../../UBERON/06/UBERON_0001906.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zona incerta](../../UBERON/07/UBERON_0001907.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral preoptic nucleus](../../UBERON/31/UBERON_0001931.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subthalamic nucleus](../../UBERON/06/UBERON_0001906.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [retrochiasmatic area](../../UBERON/33/UBERON_0001933.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subthalamic nucleus](../../UBERON/06/UBERON_0001906.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral hypothalamic area](../../UBERON/30/UBERON_0002430.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subthalamic nucleus](../../UBERON/06/UBERON_0001906.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral preoptic nucleus](../../UBERON/31/UBERON_0001931.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zona incerta](../../UBERON/07/UBERON_0001907.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [retrochiasmatic area](../../UBERON/33/UBERON_0001933.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zona incerta](../../UBERON/07/UBERON_0001907.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral hypothalamic area](../../UBERON/30/UBERON_0002430.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zona incerta](../../UBERON/07/UBERON_0001907.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [paratenial nucleus](../../UBERON/92/UBERON_0002992.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraventricular nucleus of thalamus](../../UBERON/20/UBERON_0001920.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central medial nucleus](../../UBERON/23/UBERON_0001923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parafascicular nucleus](../../UBERON/22/UBERON_0001922.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [paracentral nucleus](../../UBERON/24/UBERON_0001924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parafascicular nucleus](../../UBERON/22/UBERON_0001922.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parafascicular nucleus](../../UBERON/22/UBERON_0001922.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rhomboidal nucleus](../../UBERON/55/UBERON_0002955.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central lateral nucleus](../../UBERON/36/UBERON_0003036.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parafascicular nucleus](../../UBERON/22/UBERON_0001922.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central medial nucleus](../../UBERON/23/UBERON_0001923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paracentral nucleus](../../UBERON/24/UBERON_0001924.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central medial nucleus](../../UBERON/23/UBERON_0001923.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rhomboidal nucleus](../../UBERON/55/UBERON_0002955.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central lateral nucleus](../../UBERON/36/UBERON_0003036.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central medial nucleus](../../UBERON/23/UBERON_0001923.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [paracentral nucleus](../../UBERON/24/UBERON_0001924.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rhomboidal nucleus](../../UBERON/55/UBERON_0002955.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central lateral nucleus](../../UBERON/36/UBERON_0003036.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paracentral nucleus](../../UBERON/24/UBERON_0001924.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal lateral geniculate nucleus](../../UBERON/79/UBERON_0002479.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial geniculate body](../../UBERON/27/UBERON_0001927.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [paraventricular nucleus of hypothalamus](../../UBERON/30/UBERON_0001930.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic nucleus](../../UBERON/29/UBERON_0001929.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [arcuate nucleus of hypothalamus](../../UBERON/32/UBERON_0001932.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic nucleus](../../UBERON/29/UBERON_0001929.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [arcuate nucleus of hypothalamus](../../UBERON/32/UBERON_0001932.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraventricular nucleus of hypothalamus](../../UBERON/30/UBERON_0001930.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral preoptic nucleus](../../UBERON/31/UBERON_0001931.md) and [part_of](../../BFO/50/BFO_0000050.md) some [retrochiasmatic area](../../UBERON/33/UBERON_0001933.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral hypothalamic area](../../UBERON/30/UBERON_0002430.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral preoptic nucleus](../../UBERON/31/UBERON_0001931.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral hypothalamic area](../../UBERON/30/UBERON_0002430.md) and [part_of](../../BFO/50/BFO_0000050.md) some [retrochiasmatic area](../../UBERON/33/UBERON_0001933.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsomedial nucleus of hypothalamus](../../UBERON/34/UBERON_0001934.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventromedial nucleus of hypothalamus](../../UBERON/35/UBERON_0001935.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventromedial nucleus of hypothalamus](../../UBERON/35/UBERON_0001935.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventromedial nucleus of hypothalamus](../../UBERON/35/UBERON_0001935.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventromedial nucleus of hypothalamus](../../UBERON/35/UBERON_0001935.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral mammillary nucleus](../../UBERON/38/UBERON_0001938.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tuberomammillary nucleus](../../UBERON/36/UBERON_0001936.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial mammillary nucleus](../../UBERON/39/UBERON_0001939.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tuberomammillary nucleus](../../UBERON/36/UBERON_0001936.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [supramammillary nucleus](../../UBERON/40/UBERON_0001940.md) and [part_of](../../BFO/50/BFO_0000050.md) some [tuberomammillary nucleus](../../UBERON/36/UBERON_0001936.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral mammillary nucleus](../../UBERON/38/UBERON_0001938.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial mammillary nucleus](../../UBERON/39/UBERON_0001939.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral mammillary nucleus](../../UBERON/38/UBERON_0001938.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supramammillary nucleus](../../UBERON/40/UBERON_0001940.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial mammillary nucleus](../../UBERON/39/UBERON_0001939.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supramammillary nucleus](../../UBERON/40/UBERON_0001940.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral habenular nucleus](../../UBERON/41/UBERON_0001941.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial habenular nucleus](../../UBERON/42/UBERON_0001942.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pretectal region](../../UBERON/44/UBERON_0001944.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [red nucleus](../../UBERON/47/UBERON_0001947.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [neocortex](../../UBERON/50/UBERON_0001950.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [allocortex](../../UBERON/34/UBERON_0014734.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neocortex](../../UBERON/50/UBERON_0001950.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [presubiculum](../../UBERON/53/UBERON_0001953.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subiculum](../../UBERON/91/UBERON_0002191.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [entorhinal area](../../UBERON/28/UBERON_0002728.md) and [part_of](../../BFO/50/BFO_0000050.md) some [presubiculum](../../UBERON/53/UBERON_0001953.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parasubiculum](../../UBERON/83/UBERON_0004683.md) and [part_of](../../BFO/50/BFO_0000050.md) some [presubiculum](../../UBERON/53/UBERON_0001953.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Ammon's horn](../../UBERON/54/UBERON_0001954.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fasciolar gyrus](../../UBERON/01/UBERON_0002601.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pedunculopontine tegmental nucleus](../../UBERON/42/UBERON_0002142.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars compacta](../../UBERON/65/UBERON_0001965.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain raphe nuclei](../../UBERON/12/UBERON_0007412.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars compacta](../../UBERON/65/UBERON_0001965.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars reticulata](../../UBERON/66/UBERON_0001966.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [basal amygdaloid nucleus](../../UBERON/87/UBERON_0002887.md) and [part_of](../../BFO/50/BFO_0000050.md) some [claustrum of brain](../../UBERON/23/UBERON_0002023.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [basolateral amygdaloid nuclear complex](../../UBERON/07/UBERON_0006107.md) and [part_of](../../BFO/50/BFO_0000050.md) some [claustrum of brain](../../UBERON/23/UBERON_0002023.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprachiasmatic nucleus](../../UBERON/34/UBERON_0002034.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal premammillary nucleus](../../UBERON/67/UBERON_0007767.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial preoptic nucleus](../../UBERON/35/UBERON_0002035.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral premammillary nucleus](../../UBERON/68/UBERON_0007768.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal raphe nucleus](../../UBERON/43/UBERON_0002043.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interpeduncular nucleus](../../UBERON/45/UBERON_0002145.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [interstitial nucleus of Cajal](../../UBERON/51/UBERON_0002551.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral nucleus of posterior commissure](../../UBERON/44/UBERON_0002044.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneate nucleus](../../UBERON/45/UBERON_0002045.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gracile nucleus](../../UBERON/61/UBERON_0002161.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [locus ceruleus](../../UBERON/48/UBERON_0002148.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine raphe nucleus](../../UBERON/47/UBERON_0002047.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [laterodorsal tegmental nucleus](../../UBERON/67/UBERON_0002267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine raphe nucleus](../../UBERON/47/UBERON_0002047.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus subceruleus](../../UBERON/87/UBERON_0002587.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine raphe nucleus](../../UBERON/47/UBERON_0002047.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median raphe nucleus](../../UBERON/04/UBERON_0003004.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine raphe nucleus](../../UBERON/47/UBERON_0002047.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [arachnoid mater](../../UBERON/62/UBERON_0002362.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vasculature](../../UBERON/49/UBERON_0002049.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [forelimb](../../UBERON/02/UBERON_0002102.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hindlimb](../../UBERON/03/UBERON_0002103.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [vestibulo-auditory system](../../UBERON/05/UBERON_0002105.md) and [part_of](../../BFO/50/BFO_0000050.md) some [visual system](../../UBERON/04/UBERON_0002104.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [extrahepatic bile duct](../../UBERON/03/UBERON_0003703.md) and [part_of](../../BFO/50/BFO_0000050.md) some [liver](../../UBERON/07/UBERON_0002107.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) and [part_of](../../BFO/50/BFO_0000050.md) some [solitary tract nuclear complex](../../UBERON/26/UBERON_0002126.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior olivary complex](../../UBERON/27/UBERON_0002127.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [principal sensory nucleus of trigeminal nerve](../../UBERON/97/UBERON_0002597.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior olivary complex](../../UBERON/28/UBERON_0002128.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral lemniscus](../../UBERON/40/UBERON_0006840.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior olivary complex](../../UBERON/28/UBERON_0002128.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parabrachial nucleus](../../UBERON/34/UBERON_0007634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior olivary complex](../../UBERON/28/UBERON_0002128.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar cortex](../../UBERON/29/UBERON_0002129.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar nuclear complex](../../UBERON/30/UBERON_0002130.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior lobe of cerebellum](../../UBERON/31/UBERON_0002131.md) and [part_of](../../BFO/50/BFO_0000050.md) some [flocculonodular lobe](../../UBERON/12/UBERON_0003012.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior lobe of cerebellum](../../UBERON/31/UBERON_0002131.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior lobe of cerebellum](../../UBERON/02/UBERON_0004002.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dentate nucleus](../../UBERON/32/UBERON_0002132.md) and [part_of](../../BFO/50/BFO_0000050.md) some [fastigial nucleus](../../UBERON/53/UBERON_0002153.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parvocellular oculomotor nucleus](../../UBERON/41/UBERON_0002141.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [midbrain raphe nuclei](../../UBERON/12/UBERON_0007412.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pedunculopontine tegmental nucleus](../../UBERON/42/UBERON_0002142.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal tegmental nucleus](../../UBERON/43/UBERON_0002143.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [metathalamus](../../UBERON/04/UBERON_0002704.md) and [part_of](../../BFO/50/BFO_0000050.md) some [peripeduncular nucleus](../../UBERON/44/UBERON_0002144.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [peripeduncular nucleus](../../UBERON/44/UBERON_0002144.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral nuclear group](../../UBERON/76/UBERON_0002776.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [reticulotegmental nucleus](../../UBERON/47/UBERON_0002147.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [laterodorsal tegmental nucleus](../../UBERON/67/UBERON_0002267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [locus ceruleus](../../UBERON/48/UBERON_0002148.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [locus ceruleus](../../UBERON/48/UBERON_0002148.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus subceruleus](../../UBERON/87/UBERON_0002587.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [locus ceruleus](../../UBERON/48/UBERON_0002148.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median raphe nucleus](../../UBERON/04/UBERON_0003004.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior salivatory nucleus](../../UBERON/49/UBERON_0002149.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pontine nuclear group](../../UBERON/51/UBERON_0002151.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral reticular nucleus](../../UBERON/54/UBERON_0002154.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [gigantocellular nucleus](../../UBERON/55/UBERON_0002155.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe magnus](../../UBERON/56/UBERON_0002156.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe pallidus](../../UBERON/57/UBERON_0002157.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe magnus](../../UBERON/56/UBERON_0002156.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe obscurus](../../UBERON/84/UBERON_0002684.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe obscurus](../../UBERON/84/UBERON_0002684.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus raphe pallidus](../../UBERON/57/UBERON_0002157.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus prepositus](../../UBERON/60/UBERON_0002160.md) and [part_of](../../BFO/50/BFO_0000050.md) some [sublingual nucleus](../../UBERON/81/UBERON_0002881.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [area postrema](../../UBERON/62/UBERON_0002162.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [entorhinal area](../../UBERON/28/UBERON_0002728.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subiculum](../../UBERON/91/UBERON_0002191.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parasubiculum](../../UBERON/83/UBERON_0004683.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subiculum](../../UBERON/91/UBERON_0002191.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal premammillary nucleus](../../UBERON/67/UBERON_0007767.md) and [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [mammillary body](../../UBERON/06/UBERON_0002206.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral premammillary nucleus](../../UBERON/68/UBERON_0007768.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subfornical organ](../../UBERON/19/UBERON_0002219.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar hemisphere](../../UBERON/45/UBERON_0002245.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellar vermis](../../UBERON/20/UBERON_0004720.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hippocampal formation](../../UBERON/21/UBERON_0002421.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olfactory bulb](../../UBERON/64/UBERON_0002264.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior olfactory nucleus](../../UBERON/66/UBERON_0002266.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prepyriform area](../../UBERON/90/UBERON_0002590.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior olfactory nucleus](../../UBERON/66/UBERON_0002266.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral olfactory tract](../../UBERON/93/UBERON_0002893.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory olfactory bulb](../../UBERON/69/UBERON_0004069.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anterior olfactory nucleus](../../UBERON/66/UBERON_0002266.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior olfactory nucleus](../../UBERON/66/UBERON_0002266.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main olfactory bulb](../../UBERON/51/UBERON_0009951.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [laterodorsal tegmental nucleus](../../UBERON/67/UBERON_0002267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus subceruleus](../../UBERON/87/UBERON_0002587.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [laterodorsal tegmental nucleus](../../UBERON/67/UBERON_0002267.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median raphe nucleus](../../UBERON/04/UBERON_0003004.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [brainstem](../../UBERON/98/UBERON_0002298.md) and [part_of](../../BFO/50/BFO_0000050.md) some [midbrain tectum](../../UBERON/14/UBERON_0002314.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [neurectoderm](../../UBERON/46/UBERON_0002346.md) and [part_of](../../BFO/50/BFO_0000050.md) some [non-neural ectoderm](../../UBERON/97/UBERON_0005497.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [muscle tissue](../../UBERON/85/UBERON_0002385.md) and [part_of](../../BFO/50/BFO_0000050.md) some [neural tissue](../../UBERON/14/UBERON_0003714.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pallidum](../../UBERON/14/UBERON_0006514.md) and [part_of](../../BFO/50/BFO_0000050.md) some [striatum](../../UBERON/35/UBERON_0002435.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental nucleus](../../UBERON/38/UBERON_0002438.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [autopod region](../../UBERON/70/UBERON_0002470.md) and [part_of](../../BFO/50/BFO_0000050.md) some [stylopod](../../UBERON/72/UBERON_0002472.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [stylopod](../../UBERON/72/UBERON_0002472.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zeugopod](../../UBERON/71/UBERON_0002471.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral globus pallidus](../../UBERON/76/UBERON_0002476.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medial globus pallidus](../../UBERON/77/UBERON_0002477.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medullary reticular formation](../../UBERON/59/UBERON_0002559.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central nucleus of inferior colliculus](../../UBERON/63/UBERON_0002563.md) and [part_of](../../BFO/50/BFO_0000050.md) some [external nucleus of inferior colliculus](../../UBERON/71/UBERON_0002571.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of posterior commissure](../../UBERON/11/UBERON_0002711.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olivary pretectal nucleus](../../UBERON/65/UBERON_0002565.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of optic tract](../../UBERON/96/UBERON_0002996.md) and [part_of](../../BFO/50/BFO_0000050.md) some [olivary pretectal nucleus](../../UBERON/65/UBERON_0002565.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [olivary pretectal nucleus](../../UBERON/65/UBERON_0002565.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior pretectal nucleus](../../UBERON/48/UBERON_0006848.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median raphe nucleus](../../UBERON/04/UBERON_0003004.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus subceruleus](../../UBERON/87/UBERON_0002587.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral olfactory tract](../../UBERON/93/UBERON_0002893.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prepyriform area](../../UBERON/90/UBERON_0002590.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory olfactory bulb](../../UBERON/69/UBERON_0004069.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prepyriform area](../../UBERON/90/UBERON_0002590.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [main olfactory bulb](../../UBERON/51/UBERON_0009951.md) and [part_of](../../BFO/50/BFO_0000050.md) some [prepyriform area](../../UBERON/90/UBERON_0002590.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) and [part_of](../../BFO/50/BFO_0000050.md) some [oral part of spinal trigeminal nucleus](../../UBERON/91/UBERON_0002591.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral lemniscus](../../UBERON/40/UBERON_0006840.md) and [part_of](../../BFO/50/BFO_0000050.md) some [principal sensory nucleus of trigeminal nerve](../../UBERON/97/UBERON_0002597.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parabrachial nucleus](../../UBERON/34/UBERON_0007634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [principal sensory nucleus of trigeminal nerve](../../UBERON/97/UBERON_0002597.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cochlear nuclear complex](../../UBERON/10/UBERON_0002610.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [median preoptic nucleus](../../UBERON/25/UBERON_0002625.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [motor nucleus of trigeminal nerve](../../UBERON/33/UBERON_0002633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [dorsal premammillary nucleus](../../UBERON/67/UBERON_0007767.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterior nucleus of hypothalamus](../../UBERON/34/UBERON_0002634.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral premammillary nucleus](../../UBERON/68/UBERON_0007768.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral septal nucleus](../../UBERON/67/UBERON_0002667.md) and [part_of](../../BFO/50/BFO_0000050.md) some [septohippocampal nucleus](../../UBERON/30/UBERON_0007630.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) and [part_of](../../BFO/50/BFO_0000050.md) some [vestibular nuclear complex](../../UBERON/73/UBERON_0002673.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterodorsal nucleus of thalamus](../../UBERON/79/UBERON_0002679.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anteromedial nucleus of thalamus](../../UBERON/81/UBERON_0002681.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterodorsal nucleus of thalamus](../../UBERON/79/UBERON_0002679.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral nucleus](../../UBERON/85/UBERON_0002685.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anterodorsal nucleus of thalamus](../../UBERON/79/UBERON_0002679.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral dorsal nucleus](../../UBERON/84/UBERON_0002984.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteromedial nucleus of thalamus](../../UBERON/81/UBERON_0002681.md) and [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral nucleus](../../UBERON/85/UBERON_0002685.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteromedial nucleus of thalamus](../../UBERON/81/UBERON_0002681.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral dorsal nucleus](../../UBERON/84/UBERON_0002984.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [abducens nucleus](../../UBERON/82/UBERON_0002682.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral nucleus](../../UBERON/85/UBERON_0002685.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral dorsal nucleus](../../UBERON/84/UBERON_0002984.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) and [part_of](../../BFO/50/BFO_0000050.md) some [supraoptic crest](../../UBERON/89/UBERON_0002689.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [anteroventral periventricular nucleus](../../UBERON/90/UBERON_0002690.md) and [part_of](../../BFO/50/BFO_0000050.md) some [subparaventricular zone](../../UBERON/26/UBERON_0007626.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral tegmental area](../../UBERON/91/UBERON_0002691.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cuneiform nucleus](../../UBERON/96/UBERON_0002696.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [metathalamus](../../UBERON/04/UBERON_0002704.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral nuclear group](../../UBERON/76/UBERON_0002776.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal premammillary nucleus](../../UBERON/67/UBERON_0007767.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [posterior nucleus of hypothalamus](../../UBERON/06/UBERON_0002706.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral premammillary nucleus](../../UBERON/68/UBERON_0007768.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral posterior nucleus](../../UBERON/83/UBERON_0002983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior nuclear complex of thalamus](../../UBERON/09/UBERON_0002709.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [posterior nuclear complex of thalamus](../../UBERON/09/UBERON_0002709.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprageniculate nucleus](../../UBERON/33/UBERON_0003033.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of optic tract](../../UBERON/96/UBERON_0002996.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of posterior commissure](../../UBERON/11/UBERON_0002711.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of posterior commissure](../../UBERON/11/UBERON_0002711.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior pretectal nucleus](../../UBERON/48/UBERON_0006848.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [trochlear nucleus](../../UBERON/22/UBERON_0002722.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [entorhinal area](../../UBERON/28/UBERON_0002728.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasubiculum](../../UBERON/83/UBERON_0004683.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [intralaminar nuclear group](../../UBERON/33/UBERON_0002733.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lateral nuclear group](../../UBERON/36/UBERON_0002736.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial dorsal nucleus of thalamus](../../UBERON/39/UBERON_0002739.md) and [part_of](../../BFO/50/BFO_0000050.md) some [submedial nucleus](../../UBERON/31/UBERON_0003031.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal nucleus of medial geniculate body](../../UBERON/58/UBERON_0002758.md) and [part_of](../../BFO/50/BFO_0000050.md) some [magnocellular nucleus of medial geniculate body](../../UBERON/59/UBERON_0002759.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal nucleus of medial geniculate body](../../UBERON/58/UBERON_0002758.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral nucleus of medial geniculate body](../../UBERON/85/UBERON_0002985.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [magnocellular nucleus of medial geniculate body](../../UBERON/59/UBERON_0002759.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral nucleus of medial geniculate body](../../UBERON/85/UBERON_0002985.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [left parietal lobe](../../UBERON/02/UBERON_0002802.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right parietal lobe](../../UBERON/03/UBERON_0002803.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [left occipital lobe](../../UBERON/06/UBERON_0002806.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right occipital lobe](../../UBERON/07/UBERON_0002807.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [left frontal lobe](../../UBERON/11/UBERON_0002811.md) and [part_of](../../BFO/50/BFO_0000050.md) some [right frontal lobe](../../UBERON/10/UBERON_0002810.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory cuneate nucleus](../../UBERON/64/UBERON_0002864.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) and [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal part of spinal trigeminal nucleus](../../UBERON/66/UBERON_0002866.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal motor nucleus of vagus nerve](../../UBERON/70/UBERON_0002870.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [hypoglossal nucleus](../../UBERON/71/UBERON_0002871.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [inferior salivatory nucleus](../../UBERON/72/UBERON_0002872.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parasolitary nucleus](../../UBERON/77/UBERON_0002877.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [interpolar part of spinal trigeminal nucleus](../../UBERON/73/UBERON_0002873.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of trapezoid body](../../UBERON/33/UBERON_0007633.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory olfactory bulb](../../UBERON/69/UBERON_0004069.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral olfactory tract](../../UBERON/93/UBERON_0002893.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [main olfactory bulb](../../UBERON/51/UBERON_0009951.md) and [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral olfactory tract](../../UBERON/93/UBERON_0002893.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ventral posterolateral nucleus](../../UBERON/42/UBERON_0002942.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral posteromedial nucleus](../../UBERON/45/UBERON_0002945.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central lateral nucleus](../../UBERON/36/UBERON_0003036.md) and [part_of](../../BFO/50/BFO_0000050.md) some [rhomboidal nucleus](../../UBERON/55/UBERON_0002955.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Purkinje cell layer of cerebellar cortex](../../UBERON/79/UBERON_0002979.md) and [part_of](../../BFO/50/BFO_0000050.md) some [granular layer of cerebellar cortex](../../UBERON/56/UBERON_0002956.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [caudal pontine reticular nucleus](../../UBERON/63/UBERON_0002963.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of pons](../../UBERON/68/UBERON_0002968.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [medial septal complex](../../UBERON/29/UBERON_0007629.md) and [part_of](../../BFO/50/BFO_0000050.md) some [triangular septal nucleus](../../UBERON/77/UBERON_0002977.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral posterior nucleus](../../UBERON/83/UBERON_0002983.md) and [part_of](../../BFO/50/BFO_0000050.md) some [suprageniculate nucleus](../../UBERON/33/UBERON_0003033.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central gray substance of midbrain](../../UBERON/40/UBERON_0003040.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia nigra pars lateralis](../../UBERON/95/UBERON_0002995.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of optic tract](../../UBERON/96/UBERON_0002996.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior pretectal nucleus](../../UBERON/48/UBERON_0006848.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [Barrington's nucleus](../../UBERON/32/UBERON_0007632.md) and [part_of](../../BFO/50/BFO_0000050.md) some [facial motor nucleus](../../UBERON/11/UBERON_0003011.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [flocculonodular lobe](../../UBERON/12/UBERON_0003012.md) and [part_of](../../BFO/50/BFO_0000050.md) some [posterior lobe of cerebellum](../../UBERON/02/UBERON_0004002.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [magnocellular nucleus of stria terminalis](../../UBERON/27/UBERON_0007627.md) and [part_of](../../BFO/50/BFO_0000050.md) some [substantia innominata](../../UBERON/17/UBERON_0003017.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [central lobule](../../UBERON/21/UBERON_0003021.md) and [part_of](../../BFO/50/BFO_0000050.md) some [cerebellum vermis lobule IV](../../UBERON/77/UBERON_0004077.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [female organism](../../UBERON/00/UBERON_0003100.md) and [part_of](../../BFO/50/BFO_0000050.md) some [male organism](../../UBERON/01/UBERON_0003101.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [cranium](../../UBERON/28/UBERON_0003128.md) and [part_of](../../BFO/50/BFO_0000050.md) some [skeleton of lower jaw](../../UBERON/78/UBERON_0003278.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [CA1 field of hippocampus](../../UBERON/81/UBERON_0003881.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [CA2 field of hippocampus](../../UBERON/82/UBERON_0003882.md) and [part_of](../../BFO/50/BFO_0000050.md) some [CA3 field of hippocampus](../../UBERON/83/UBERON_0003883.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [accessory olfactory bulb](../../UBERON/69/UBERON_0004069.md) and [part_of](../../BFO/50/BFO_0000050.md) some [main olfactory bulb](../../UBERON/51/UBERON_0009951.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ansiform lobule](../../UBERON/48/UBERON_0005348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [copula pyramidis](../../UBERON/47/UBERON_0005347.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [copula pyramidis](../../UBERON/47/UBERON_0005347.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paramedian lobule](../../UBERON/49/UBERON_0005349.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [copula pyramidis](../../UBERON/47/UBERON_0005347.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobule simplex](../../UBERON/50/UBERON_0005350.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [copula pyramidis](../../UBERON/47/UBERON_0005347.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraflocculus](../../UBERON/51/UBERON_0005351.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ansiform lobule](../../UBERON/48/UBERON_0005348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paramedian lobule](../../UBERON/49/UBERON_0005349.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ansiform lobule](../../UBERON/48/UBERON_0005348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [lobule simplex](../../UBERON/50/UBERON_0005350.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [ansiform lobule](../../UBERON/48/UBERON_0005348.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraflocculus](../../UBERON/51/UBERON_0005351.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lobule simplex](../../UBERON/50/UBERON_0005350.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paramedian lobule](../../UBERON/49/UBERON_0005349.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [paraflocculus](../../UBERON/51/UBERON_0005351.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paramedian lobule](../../UBERON/49/UBERON_0005349.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lobule simplex](../../UBERON/50/UBERON_0005350.md) and [part_of](../../BFO/50/BFO_0000050.md) some [paraflocculus](../../UBERON/51/UBERON_0005351.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [superficial white layer of superior colliculus](../../UBERON/79/UBERON_0006779.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus superficial gray layer](../../UBERON/20/UBERON_0006120.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [superior colliculus superficial gray layer](../../UBERON/20/UBERON_0006120.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zonal layer of superior colliculus](../../UBERON/80/UBERON_0006780.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [muscle layer](../../UBERON/60/UBERON_0006660.md) and [part_of](../../BFO/50/BFO_0000050.md) some [muscularis mucosa](../../UBERON/76/UBERON_0006676.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [superficial white layer of superior colliculus](../../UBERON/79/UBERON_0006779.md) and [part_of](../../BFO/50/BFO_0000050.md) some [zonal layer of superior colliculus](../../UBERON/80/UBERON_0006780.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [nucleus of lateral lemniscus](../../UBERON/40/UBERON_0006840.md) and [part_of](../../BFO/50/BFO_0000050.md) some [parabrachial nucleus](../../UBERON/34/UBERON_0007634.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [lateral vestibular nucleus](../../UBERON/30/UBERON_0007230.md) and [part_of](../../BFO/50/BFO_0000050.md) some [superior vestibular nucleus](../../UBERON/27/UBERON_0007227.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage skeleton](../../UBERON/73/UBERON_0007273.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage skeleton](../../UBERON/72/UBERON_0007272.md) + * [connected to](../../UBREL/01/UBREL_0000001.md) some [part_of](../../BFO/50/BFO_0000050.md) some [pectoral appendage skeleton](../../UBERON/72/UBERON_0007272.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic appendage skeleton](../../UBERON/73/UBERON_0007273.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [dorsal premammillary nucleus](../../UBERON/67/UBERON_0007767.md) and [part_of](../../BFO/50/BFO_0000050.md) some [ventral premammillary nucleus](../../UBERON/68/UBERON_0007768.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [meningeal dura mater](../../UBERON/06/UBERON_0010506.md) and [part_of](../../BFO/50/BFO_0000050.md) some [periosteal dura mater](../../UBERON/05/UBERON_0010505.md) + * [part_of](../../BFO/50/BFO_0000050.md) some [pectoral complex](../../UBERON/08/UBERON_0010708.md) and [part_of](../../BFO/50/BFO_0000050.md) some [pelvic complex](../../UBERON/09/UBERON_0010709.md) ## Other Logical Axioms @@ -863,5 +863,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/md/ontology/le/ontology_usage_article.md b/md/ontology/le/ontology_usage_article.md index f69170619f..65e8cf55f4 100644 --- a/md/ontology/le/ontology_usage_article.md +++ b/md/ontology/le/ontology_usage_article.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = Documentation describing how a particular piece of the ontology is intended to be used +## Usage + + ## External Comments diff --git a/md/ontology/on/ontology_documentation.md b/md/ontology/on/ontology_documentation.md index bb7be5f086..514490e33f 100644 --- a/md/ontology/on/ontology_documentation.md +++ b/md/ontology/on/ontology_documentation.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = Documentation describing an ontology or some aspect of an ontology +## Usage + + ## External Comments diff --git a/md/ontology/rn/ontology_design_pattern.md b/md/ontology/rn/ontology_design_pattern.md index 4d0f34c582..aef6fb7080 100644 --- a/md/ontology/rn/ontology_design_pattern.md +++ b/md/ontology/rn/ontology_design_pattern.md @@ -28,5 +28,8 @@ * *[description](../../on/description.md)* = A template or design pattern that is repeated multiple kinds * *[see also](../../so/rdf-schema#seeAlso.md)* = http://www.springerlink.com/content/d2lp476v0p281q73/ +## Usage + + ## External Comments diff --git a/md/spreadsheet/on/spreadsheet_documentation.md b/md/spreadsheet/on/spreadsheet_documentation.md index eb193c636a..6cff11dc90 100644 --- a/md/spreadsheet/on/spreadsheet_documentation.md +++ b/md/spreadsheet/on/spreadsheet_documentation.md @@ -27,5 +27,8 @@ * *[description](../../on/description.md)* = A description of and link to a spreadsheet that contains domain knowledge in tabular form +## Usage + + ## External Comments diff --git a/md/us/Status.md b/md/us/Status.md index 8714274ab6..f7105df614 100644 --- a/md/us/Status.md +++ b/md/us/Status.md @@ -26,5 +26,8 @@ ## Other Annotations +## Usage + + ## External Comments diff --git a/ncbitaxon_import.owl b/ncbitaxon_import.owl index 97a9b601f3..73a37c8b5e 100644 --- a/ncbitaxon_import.owl +++ b/ncbitaxon_import.owl @@ -6,7 +6,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> - + diff --git a/pato_import.owl b/pato_import.owl index 8c0080a496..c559fa9877 100644 --- a/pato_import.owl +++ b/pato_import.owl @@ -6,7 +6,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> - + diff --git a/pr_import.owl b/pr_import.owl index 51719f4835..c282684d31 100644 --- a/pr_import.owl +++ b/pr_import.owl @@ -6,7 +6,7 @@ xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"> - + diff --git a/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo b/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo index 310bc179e6..16459e9bc2 100644 --- a/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo +++ b/subsets/uberon-with-isa-for-FMA-MA-ZFA.obo @@ -103,7 +103,7 @@ namespace: none def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -1863,8 +1863,7 @@ id: UBERON:4200140 name: prepollical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] @@ -1872,8 +1871,7 @@ id: UBERON:4200141 name: prehallical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:3000922 ! prehallux skeleton [Term] @@ -6573,11 +6571,11 @@ relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 -name: tibial cartilage +name: tibial cartilage tissue namespace: uberon def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] -comment: TODO -synonym: "cartilage of tibia" EXACT [FMA:33923] +comment: This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia +synonym: "cartilage of tibia" RELATED [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue @@ -8742,7 +8740,7 @@ relationship: part_of UBERON:0001870 ! frontal cortex id: UBERON:0000453 name: decidua basalis namespace: uberon -def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [MGI:anna, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599] +def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [MP:0012529, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity subset: efo_slim ! EFO slim synonym: "basal decidua" RELATED [MGI:anna] @@ -9787,7 +9785,7 @@ relationship: part_of UBERON:0001073 ! ileocecal junction id: UBERON:0000642 name: suspensory ligament of duodenum namespace: uberon -def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] @@ -10332,6 +10330,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string +property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string property_value: has_relational_adjective "stomodeal" xsd:string [Term] @@ -11526,7 +11525,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extrem xref: ncithesaurus:Humerus is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone -relationship: develops_from UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +relationship: develops_from UBERON:0006245 ! humerus cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod property_value: homologous_in NCBITaxon:7742 @@ -11627,7 +11627,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px xref: ncithesaurus:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string @@ -11689,7 +11690,8 @@ xref: ncithesaurus:Femur is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +relationship: develops_from UBERON:0010129 ! femur cartilage element relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 ! hindlimb skeleton property_value: homologous_in NCBITaxon:7742 @@ -14639,7 +14641,7 @@ name: obsolete articular cartilage namespace: uberon is_obsolete: true consider: UBERON:0010996 ! articular cartilage of joint -consider: UBERON:0011002 ! articular cartilage condensation +consider: UBERON:0011002 ! articular cartilage element comment: obsoleted as it conflated two distinct classes [Term] @@ -14860,8 +14862,8 @@ xref: ncithesaurus:Sacral_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -is_a: UBERON:0005179 ! pelvic region organ -relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: part_of UBERON:0006075 ! sacral region of vertebral column intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column @@ -19651,7 +19653,8 @@ xref: ncithesaurus:Ilium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +relationship: develops_from UBERON:0010714 ! iliac cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -19684,7 +19687,8 @@ xref: ncithesaurus:Ischium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -19714,7 +19718,8 @@ xref: ncithesaurus:Pubic_Bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -23242,7 +23247,8 @@ xref: galen:Radius xref: ncithesaurus:Radius_Bone is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +relationship: develops_from UBERON:0006286 ! radius cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string @@ -23272,7 +23278,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extrem xref: ncithesaurus:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +relationship: develops_from UBERON:0006306 ! ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string @@ -23418,6 +23425,9 @@ xref: Wikipedia:Trapezium_(bone) xref: galen:Trapezium xref: ncithesaurus:Trapezial_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001431 @@ -23448,6 +23458,9 @@ xref: Wikipedia:Trapezoid_bone xref: galen:Trapezoid xref: ncithesaurus:Trapezoid_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string @@ -23480,6 +23493,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Capitate_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -23511,6 +23527,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Hamate_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -23573,7 +23592,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px- xref: ncithesaurus:Carpal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone -relationship: develops_from UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element +relationship: develops_from UBERON:0006213 ! carpus cartilage element relationship: part_of UBERON:0004452 ! carpal region relationship: part_of UBERON:0009880 ! carpal skeleton intersection_of: UBERON:0001474 ! bone element @@ -23611,7 +23631,8 @@ xref: ncithesaurus:Hand_Phalanx is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone -relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium intersection_of: UBERON:0003221 ! phalanx @@ -23890,7 +23911,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extrem xref: ncithesaurus:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string @@ -23924,7 +23946,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200p xref: ncithesaurus:Tarsal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: develops_from UBERON:0010541 ! tarsus cartilage element relationship: part_of UBERON:0004454 ! tarsal region relationship: part_of UBERON:0009879 ! tarsal skeleton intersection_of: UBERON:0001474 ! bone element @@ -23953,6 +23976,7 @@ xref: ncithesaurus:Metatarsal_Bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0010545 ! metatarsus skeleton intersection_of: UBERON:0001474 ! bone element @@ -23989,7 +24013,8 @@ xref: ncithesaurus:Phalanx_of_the_Foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone -relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0002387 ! pes relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium @@ -24026,7 +24051,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG xref: ncithesaurus:Calcaneum is_a: UBERON:0011679 ! proximal tarsal bone -relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton property_value: has_relational_adjective "calcaneal" xsd:string @@ -24096,6 +24122,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png xref: ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string [Term] @@ -24131,6 +24160,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string [Term] @@ -24167,6 +24199,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:External_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string @@ -24882,6 +24917,9 @@ xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001481 @@ -24894,6 +24932,8 @@ xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +relationship: develops_from UBERON:0015069 ! distal carpal cartilage relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string @@ -29790,7 +29830,8 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008193 ! pneumatized bone -relationship: develops_from UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0015060 ! sphenoid endochondral element +relationship: develops_from UBERON:0009193 ! sphenoid cartilage element relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -30122,10 +30163,10 @@ property_value: homology_notes "Additional structural analysis within a phylogen [Term] id: UBERON:0001687 -name: stapes +name: stapes bone namespace: uberon def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [Wikipedia:Stapes, doi:10.1111/j.1469-7580.2005.00441.x] -comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): \"This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.\" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] +comment: Taxon notes (via VHOG): \"This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.\" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] @@ -30156,17 +30197,19 @@ xref: ncithesaurus:Stapes is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0004368 ! Reichert's cartilage -relationship: develops_from UBERON:0010055 ! stapes cartilage condensation +relationship: develops_from UBERON:0010055 ! stapes cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string [Term] id: UBERON:0001688 -name: incus +name: incus bone namespace: uberon def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms +synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 @@ -30183,17 +30226,20 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px xref: ncithesaurus:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone -relationship: develops_from UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0015017 ! incus endochondral element +relationship: develops_from UBERON:0007374 ! incus cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string [Term] id: UBERON:0001689 -name: malleus +name: malleus bone namespace: uberon def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus] +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] +synonym: "malleus" BROAD [MA:0001216] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 @@ -30208,8 +30254,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px xref: ncithesaurus:Malleus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0003107 ! Meckel's cartilage -relationship: develops_from UBERON:0010054 ! malleus cartilage condensation +relationship: develops_from UBERON:0010054 ! malleus cartilage element property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string @@ -30329,8 +30376,10 @@ xref: ZFA:0000472 xref: http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region @@ -30370,9 +30419,11 @@ xref: ZFA:0000661 xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0009635 ! parachordal cartilage -relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -36509,7 +36560,6 @@ id: UBERON:0001897 name: dorsal plus ventral thalamus namespace: uberon def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] -comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -36668,11 +36718,11 @@ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obs subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "SbTh" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource, NIF_GrossAnatomy:birnlex_708] synonym: "perithalamus" RELATED [Wikipedia:Thalamus] -synonym: "prethalamus" EXACT DEVELOPMENTAL [] -synonym: "subthalamic region" EXACT [] -synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708] +synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] +synonym: "subthalamic region" EXACT [FMA:62010, NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [NIF_GrossAnatomy:birnlex_708] -synonym: "ventral thalamus" EXACT [MA:0000181] +synonym: "ventral thalamus" EXACT [GO:0021539, MA:0000181] xref: BAMS:SbTh xref: BAMS:VNT xref: BAMS:VT @@ -36695,7 +36745,6 @@ xref: ZFA:0000458 xref: ncithesaurus:Ventral_Thalamus is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus -property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string property_value: has_relational_adjective "subthalamic" xsd:string [Term] @@ -38317,7 +38366,7 @@ synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] -synonym: "isocortex" EXACT [] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] @@ -45728,7 +45777,7 @@ property_value: homology_notes "There are more than 50,000 extant vertebrate spe id: UBERON:0002205 name: manubrium of sternum namespace: uberon -def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "manubrium" BROAD [] @@ -46309,7 +46358,8 @@ xref: ncithesaurus:Rib is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: develops_from UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +relationship: develops_from UBERON:0006288 ! rib cartilage element relationship: in_lateral_side_of UBERON:0014478 ! rib skeletal system relationship: part_of UBERON:0014478 ! rib skeletal system property_value: homologous_in NCBITaxon:7742 @@ -47413,7 +47463,7 @@ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obs subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] -synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery] +synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] xref: EHDAA2:0004072 xref: EMAPA:19242 @@ -49414,7 +49464,8 @@ xref: ncithesaurus:Thoracic_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone -relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0006073 ! thoracic region of vertebral column intersection_of: UBERON:0002412 ! vertebra @@ -50334,6 +50385,7 @@ xref: ncithesaurus:Metacarpal_Bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0010544 ! metacarpus skeleton intersection_of: UBERON:0001474 ! bone element @@ -50812,8 +50864,7 @@ property_value: external_definition "One of the fingers of the manus.[AAO]" xsd: id: UBERON:0002390 name: hematopoietic system namespace: uberon -def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, OMD:haematological, Wikipedia:Hematopoietic_system, http://www.thefreedictionary.com/hematopoietic+system] -comment: This class was created automatically from a combination of ontologies +def: "Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes." [Wikipedia:Haematopoiesis] subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -50840,7 +50891,7 @@ xref: SCTID:362587009 xref: TAO:0005023 xref: UMLS:C0018957 xref: VHOG:0001624 -xref: Wikipedia:Hematopoietic_system +xref: Wikipedia:Haematopoiesis xref: XAO:0000122 xref: ZFA:0005023 xref: ncithesaurus:Hematopoietic_System @@ -51539,7 +51590,8 @@ xref: ncithesaurus:Vertebra is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: develops_from UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element +relationship: develops_from UBERON:0011094 ! vertebra cartilage element relationship: part_of UBERON:0001130 ! vertebral column property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string @@ -51570,7 +51622,8 @@ xref: ncithesaurus:Cervical_Vertebra is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0004451 ! trunk or cervical vertebra -relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element relationship: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0006072 ! cervical region of vertebral column intersection_of: UBERON:0002412 ! vertebra @@ -51599,7 +51652,8 @@ xref: ncithesaurus:Lumbar_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column @@ -52013,7 +52067,8 @@ xref: UMLS:C0582791 xref: ncithesaurus:Bone_of_the_Extremity is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin -relationship: develops_from UBERON:0010881 ! limb bone cartilage condensation +is_a: UBERON:0015061 ! limb endochondral element +relationship: develops_from UBERON:0010881 ! limb cartilage element relationship: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0004381 ! skeleton of limb intersection_of: UBERON:0001474 ! bone element @@ -53346,6 +53401,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbito-sphC)nocC/de@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [UBERON:cjm] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -53359,7 +53415,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone @@ -53778,7 +53835,7 @@ xref: SCTID:279685009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001687 ! stapes +relationship: part_of UBERON:0001687 ! stapes bone [Term] id: UBERON:0002497 @@ -58115,12 +58172,12 @@ id: UBERON:0002689 name: supraoptic crest namespace: uberon def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [Wikipedia:Organum_vasculosum_of_the_lamina_terminalis, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] -comment: AO notes: NIF has two classes here +comment: AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis synonym: "OVLT" EXACT ABBREVIATION [] synonym: "SoC" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource, NIF_GrossAnatomy:birnlex_1400] synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] -synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] @@ -66075,7 +66132,7 @@ property_value: external_definition "There are two primary regions that are thou id: UBERON:0003054 name: roof plate namespace: uberon -def: "a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +def: "a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -66085,8 +66142,10 @@ xref: AAO:0011097 xref: NeuroNames:1371 xref: TAO:0007058 xref: ZFA:0007058 -is_a: UBERON:0005423 ! developing anatomical structure -relationship: part_of UBERON:0000922 ! embryo +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: in_dorsal_side_of UBERON:0001049 ! neural tube relationship: part_of UBERON:0001049 ! neural tube property_value: external_definition "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string @@ -66775,7 +66834,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic id: UBERON:0003079 name: floor plate namespace: uberon -def: "A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms @@ -66794,11 +66853,15 @@ xref: Wikipedia:Floor_plate xref: ZFA:0000022 xref: http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png -is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002328 ! notochord relationship: develops_from UBERON:0007286 ! presumptive floor plate -relationship: part_of UBERON:0000922 ! embryo -relationship: part_of UBERON:0001016 ! nervous system +relationship: in_ventral_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube +property_value: dc-description " A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." xsd:string property_value: external_definition "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string [Term] @@ -69181,7 +69244,8 @@ xref: galen:Phalanx xref: ncithesaurus:Phalanx is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone -relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: develops_from UBERON:0010701 ! phalanx cartilage element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0010543 ! acropodial skeleton intersection_of: UBERON:0002495 ! long bone @@ -69782,6 +69846,7 @@ synonym: "rib cage" EXACT [FMA:7480] synonym: "thoracic cage" EXACT [FMA:7480] xref: FMA:7480 xref: SCTID:361741004 +xref: Wikipedia:Human_rib_cage xref: Wikipedia:Rib_cage xref: galen:RibCage xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png @@ -70855,9 +70920,8 @@ xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002950 ! regional part of midbrain -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -70887,9 +70951,8 @@ xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002791 ! regional part of telencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -70931,9 +70994,8 @@ xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002784 ! regional part of diencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -70962,9 +71024,8 @@ xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001895 ! metencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -70999,9 +71060,8 @@ xref: EHDAA2:0001097 xref: EHDAA:7590 xref: EMAPA:17551 xref: VHOG:0000786 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002678 ! regional part of medulla oblongata -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -73722,7 +73782,8 @@ xref: UMLS:C0448188 xref: ncithesaurus:Bone_of_the_Lower_Extremity is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex -relationship: develops_from UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002103 ! hindlimb intersection_of: UBERON:0001474 ! bone element @@ -77129,7 +77190,8 @@ xref: SCTID:181975002 xref: UMLS:C1711344 xref: ncithesaurus:Hand_Digit_1_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element relationship: part_of UBERON:0001463 ! manual digit 1 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! manual digit 1 @@ -77510,7 +77572,8 @@ xref: SCTID:361783009 xref: UMLS:C1708312 xref: ncithesaurus:Hand_Digit_2_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element relationship: part_of UBERON:0003622 ! manual digit 2 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! manual digit 2 @@ -77554,7 +77617,8 @@ xref: SCTID:361785002 xref: UMLS:C1708314 xref: ncithesaurus:Hand_Digit_3_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element relationship: part_of UBERON:0003623 ! manual digit 3 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! manual digit 3 @@ -77598,7 +77662,8 @@ xref: SCTID:361787005 xref: UMLS:C1708316 xref: ncithesaurus:Hand_Digit_4_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element relationship: part_of UBERON:0003624 ! manual digit 4 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! manual digit 4 @@ -77645,7 +77710,8 @@ xref: SCTID:361789008 xref: UMLS:C1708317 xref: ncithesaurus:Hand_Digit_5_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element relationship: part_of UBERON:0003625 ! manual digit 5 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! manual digit 5 @@ -77679,7 +77745,8 @@ xref: SCTID:361798006 xref: UMLS:C1708080 xref: ncithesaurus:Foot_Digit_1_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element relationship: part_of UBERON:0003631 ! pedal digit 1 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! pedal digit 1 @@ -77705,7 +77772,8 @@ xref: SCTID:361800004 xref: UMLS:C1708082 xref: ncithesaurus:Foot_Digit_2_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element relationship: part_of UBERON:0003632 ! pedal digit 2 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! pedal digit 2 @@ -77731,7 +77799,8 @@ xref: SCTID:361802007 xref: UMLS:C1708084 xref: ncithesaurus:Foot_Digit_3_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element relationship: part_of UBERON:0003633 ! pedal digit 3 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! pedal digit 3 @@ -77796,7 +77865,8 @@ xref: UMLS:C1708987 xref: ncithesaurus:Metacarpal_Bone_Digit_1 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element property_value: external_definition "The first metacarpal bone or the metacarpal bone of the thumb is the first bone of the thumb. It is connected to the trapezium of the carpus at the first carpometacarpal joint and to the proximal thumb phalanx at the first metacarpophalangeal joint[Wikipedia:First_metacarpal_bone]." xsd:string property_value: ray_number "1" xsd:nonNegativeInteger @@ -77836,7 +77906,8 @@ xref: UMLS:C1708988 xref: ncithesaurus:Metacarpal_Bone_Digit_2 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -77878,7 +77949,8 @@ xref: Wikipedia:Third_metacarpal_bone xref: ncithesaurus:Metacarpal_Bone_Digit_3 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO]" xsd:string property_value: external_definition "The third metacarpal bone (metacarpal bone of the middle finger) is a little smaller than the second. The dorsal aspect of its base presents on its radial side a pyramidal eminence, the styloid process, which extends upward behind the capitate; immediately distal to this is a rough surface for the attachment of the extensor carpi radialis brevis muscle. The carpal articular facet is concave behind, flat in front, and articulates with the capitate. On the radial side is a smooth, concave facet for articulation with the second metacarpal, and on the ulnar side two small oval facets for the fourth metacarpal[Wikipedia:Third_metacarpal_bone]." xsd:string property_value: ray_number "3" xsd:nonNegativeInteger @@ -77919,7 +77991,8 @@ xref: UMLS:C1708990 xref: ncithesaurus:Metacarpal_Bone_Digit_4 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element property_value: external_definition "The fourth metacarpal bone (metacarpal bone of the ring finger) is shorter and smaller than the third. The base is small and quadrilateral; its superior surface presents two facets, a large one medially for articulation with the hamate, and a small one laterally for the capitate. On the radial side are two oval facets, for articulation with the third metacarpal; and on the ulnar side a single concave facet, for the fifth metacarpal[Wikipedia:Fourth_metacarpal_bone]." xsd:string property_value: ray_number "4" xsd:nonNegativeInteger @@ -77960,7 +78033,8 @@ xref: UMLS:C1711224 xref: ncithesaurus:Metacarpal_Bone_Digit_5 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO]" xsd:string property_value: external_definition "The fifth metacarpal bone (metacarpal bone of the little finger or pinky finger) is the most lateral metacarpal[Wikipedia:Fifth_metacarpal_bone]." xsd:string property_value: ray_number "5" xsd:nonNegativeInteger @@ -77989,7 +78063,8 @@ xref: UMLS:C1708999 xref: ncithesaurus:Metatarsal_Bone_Digit_1 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO]" xsd:string property_value: external_definition "The first metatarsal bone is the bone in the body of the foot just behind the big toe. It is remarkable for its great thickness, and is the shortest of the metatarsal bones. The body is strong, and of well-marked prismoid form. The base presents, as a rule, no articular facets on its sides, but occasionally on the lateral side there is an oval facet, by which it articulates with the second metatarsal. Its proximal articular surface is of large size and kidney-shaped; its circumference is grooved, for the tarsometatarsal ligaments, and medially gives insertion to part of the tendon of the Tibialis anterior; its plantar angle presents a rough oval prominence for the insertion of the tendon of the PeronC&us longus. The head is large; on its plantar surface are two grooved facets, on which glide sesamoid bones; the facets are separated by a smooth elevation[Wikipedia:First_metatarsal_bone]." xsd:string property_value: ray_number "1" xsd:nonNegativeInteger @@ -78016,7 +78091,8 @@ xref: UMLS:C1709000 xref: ncithesaurus:Metatarsal_Bone_Digit_2 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -78044,7 +78120,8 @@ xref: Wikipedia:Third_metatarsal_bone xref: ncithesaurus:Metatarsal_Bone_Digit_3 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO]" xsd:string property_value: external_definition "The third metatarsal bone articulates proximally, by means of a triangular smooth surface, with the third cuneiform; medially, by two facets, with the second metatarsal; and laterally, by a single facet, with the fourth metatarsal. This last facet is situated at the dorsal angle of the base[Wikipedia:Third_metatarsal_bone]." xsd:string property_value: ray_number "3" xsd:nonNegativeInteger @@ -78071,7 +78148,8 @@ xref: UMLS:C1709002 xref: ncithesaurus:Metatarsal_Bone_Digit_4 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO]" xsd:string property_value: external_definition "The fourth metatarsal bone is smaller in size than the third; its base presents an oblique quadrilateral surface for articulation with the cuboid; a smooth facet on the medial side, divided by a ridge into an anterior portion for articulation with the third metatarsal, and a posterior portion for articulation with the third cuneiform; on the lateral side a single facet, for articulation with the fifth metatarsal[Wikipedia:Fourth_metatarsal_bone]." xsd:string property_value: ray_number "4" xsd:nonNegativeInteger @@ -78098,7 +78176,8 @@ xref: UMLS:C1709003 xref: ncithesaurus:Metatarsal_Bone_Digit_5 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO]" xsd:string property_value: external_definition "The fifth metatarsal bone is recognized by a rough eminence, the tuberosity, on the lateral side of its base. The base articulates behind, by a triangular surface cut obliquely in a transverse direction, with the cuboid; and medially, with the fourth metatarsal. On the medial part of its dorsal surface is inserted the tendon of the PeronC&us tertius and on the dorsal surface of the tuberosity that of the PeronC&us brevis. A strong band of the plantar aponeurosis connects the projecting part of the tuberosity with the lateral process of the tuberosity of the calcaneus. The plantar surface of the base is grooved for the tendon of the Abductor digiti quinti, and gives origin to the Flexor digiti quinti brevis. The base of the metatarsal is often injured and a particularly notorious fracture is the Jones fracture. When the tuberosity is broken, it is called a pseudo-Jones fracture or a dancer's fracture. This is a common fracture of the fifth metatarsal. Stress fractures are common in the fifth metatarsal among athletes[Wikipedia:Fifth_metatarsal_bone]." xsd:string property_value: ray_number "5" xsd:nonNegativeInteger @@ -80645,7 +80724,8 @@ xref: SCTID:361804008 xref: UMLS:C1708086 xref: ncithesaurus:Foot_Digit_4_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element relationship: part_of UBERON:0003634 ! pedal digit 4 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! pedal digit 4 @@ -80673,7 +80753,8 @@ xref: SCTID:361806005 xref: UMLS:C1708088 xref: ncithesaurus:Foot_Digit_5_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element relationship: part_of UBERON:0003635 ! pedal digit 5 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! pedal digit 5 @@ -82111,7 +82192,6 @@ id: UBERON:0003957 name: Bruch's membrane namespace: uberon def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] -comment: TODO - see also subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] synonym: "Bruch's basal membrane" EXACT [FMA:58438] @@ -82270,7 +82350,7 @@ synonym: "gonium" EXACT [MP:0008380] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0003967 @@ -91720,7 +91800,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone id: UBERON:0004547 name: decidua capsularis namespace: uberon -def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] xref: FMA:86478 xref: MA:0002906 xref: SCTID:255498003 @@ -92004,8 +92084,9 @@ namespace: uberon def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology -synonym: "Costa prima (I)" EXACT [FMA:7597] +synonym: "costa I" EXACT LATIN [] synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib] +synonym: "costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: MA:0001401 @@ -92025,8 +92106,9 @@ namespace: uberon def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology -synonym: "Costa secunda (II)" EXACT [FMA:7620] +synonym: "costa II" EXACT LATIN [] synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib] +synonym: "costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: MA:0001402 @@ -92045,6 +92127,7 @@ name: rib 3 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa III" EXACT LATIN [] synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 @@ -92060,6 +92143,7 @@ name: rib 4 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa IV" EXACT LATIN [] synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 @@ -92075,6 +92159,7 @@ name: rib 5 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa V" EXACT LATIN [] synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 @@ -92090,6 +92175,7 @@ name: rib 6 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VI" EXACT LATIN [] synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 @@ -92105,6 +92191,7 @@ name: rib 7 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VII" EXACT LATIN [] synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 @@ -92120,6 +92207,7 @@ name: rib 9 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa IX" EXACT LATIN [] synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 @@ -92136,6 +92224,7 @@ namespace: uberon def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa X" EXACT LATIN [] synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: MA:0001410 @@ -92155,6 +92244,7 @@ namespace: uberon def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa XI" EXACT LATIN [] synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: MA:0001411 @@ -92173,6 +92263,7 @@ namespace: uberon def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa XII" EXACT LATIN [] synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: MA:0001412 @@ -92630,10 +92721,11 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: SCTID:361515007 xref: VHOG:0000854 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010363 ! endochondral element -relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015020 ! otic capsule endochondral element +relationship: develops_from UBERON:0010351 ! otic capsule cartilage element relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -93814,7 +93906,7 @@ intersection_of: part_of UBERON:0001004 ! respiratory system id: UBERON:0004703 name: dorsal thalamus namespace: uberon -comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 +comment: TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] @@ -93833,6 +93925,7 @@ xref: ZFA:0000653 xref: ncithesaurus:Dorsal_Thalamus is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +property_value: present_in_taxon NCBITaxon:7776 [Term] id: UBERON:0004704 @@ -94708,7 +94801,7 @@ xref: Wikipedia:Articular xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone -relationship: develops_from UBERON:0011002 ! articular cartilage condensation +relationship: develops_from UBERON:0011002 ! articular cartilage element property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string @@ -94787,8 +94880,10 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -100318,8 +100413,7 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0005070 name: anterior neuropore namespace: uberon -def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] -comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube +def: "The neuropore at the anterior (rostral) end of the neural tube." [UBERON:cjm] synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "rostral neuropore" EXACT [EMAPA:16523] @@ -100329,6 +100423,9 @@ xref: RETIRED_EHDAA2:0001768 xref: SCTID:361478000 xref: VHOG:0000768 is_a: UBERON:0005077 ! neuropore +relationship: in_anterior_side_of UBERON:0001049 ! neural tube +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_anterior_side_of UBERON:0001049 ! neural tube property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Anterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string @@ -100336,7 +100433,7 @@ property_value: external_definition "Anterior site of neural tube closure. [Evol id: UBERON:0005071 name: posterior neuropore namespace: uberon -def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] +def: "The neuropore at the posterior (caudal) end of the neural tube." [UBERON:cjm] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA2:0000676 xref: EHDAA:900 @@ -100345,6 +100442,9 @@ xref: RETIRED_EHDAA2:0000223 xref: SCTID:361479008 xref: VHOG:0000769 is_a: UBERON:0005077 ! neuropore +relationship: in_posterior_side_of UBERON:0001049 ! neural tube +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_posterior_side_of UBERON:0001049 ! neural tube property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Posterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string @@ -100385,30 +100485,33 @@ is_a: UBERON:0000015 ! anatomical boundary id: UBERON:0005077 name: neuropore namespace: uberon -def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] xref: SCTID:360408007 +is_a: UBERON:0000161 ! orifice is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001049 ! neural tube +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore [Term] id: UBERON:0005078 -name: lamina terminalis of forebrain vesicle +name: lamina terminalis of neural tube namespace: uberon -def: "The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development." [Wikipedia:Lamina_terminalis] -synonym: "lamina terminalis" EXACT [FMA:61975] -xref: BAMS:LT +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT xref: EHDAA2:0000903 +xref: EHDAA:1983 +xref: EHDAA:2661 xref: EMAPA:16649 xref: EMAPA:16904 -xref: FMA:61975 xref: NeuroNames:208 -xref: SCTID:361483008 xref: VHOG:0001547 -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: part_of UBERON:0006222 ! future diencephalon property_value: homologous_in NCBITaxon:7742 @@ -103835,7 +103938,7 @@ xref: MA:0002987 xref: SCTID:368926004 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005343 @@ -104042,7 +104145,7 @@ namespace: uberon def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 @@ -104059,7 +104162,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005356 @@ -105134,8 +105237,10 @@ synonym: "auditory capsule" EXACT [ZFA:0001500] xref: EMAPA:18803 xref: TAO:0001500 xref: ZFA:0001500 -is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004637 ! otic capsule +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010351 ! otic capsule cartilage element +is_a: UBERON:0014387 ! mesenchyme derived from neural crest property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: external_definition "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string @@ -105591,7 +105696,7 @@ relationship: part_of UBERON:0004571 ! systemic arterial system id: UBERON:0005432 name: aortic sac namespace: uberon -def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac] +def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] xref: EHDAA2:0004145 xref: EHDAA:9826 xref: FMA:71008 @@ -105604,6 +105709,7 @@ is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004363 ! aortic arch relationship: part_of UBERON:0004145 ! outflow tract +property_value: external_definition "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string [Term] id: UBERON:0005433 @@ -108954,16 +109060,18 @@ intersection_of: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0005687 -name: orbitosphenoid cartilage condensation +name: orbitosphenoid cartilage element namespace: uberon -synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329] +synonym: "sphenoid lesser wing cartilage element" RELATED [EHDAA2:0001329] xref: EHDAA2:0001329 xref: EHDAA:9554 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element relationship: develops_from UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0005688 @@ -109429,8 +109537,7 @@ xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: develops_from UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0003079 ! floor plate @@ -110623,7 +110730,7 @@ is_a: UBERON:0005856 ! developing mesenchymal condensation id: UBERON:0005866 name: pre-cartilage condensation namespace: uberon -def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage] +def: "A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts." [AEO:0000150, AEO:JB] synonym: "pre-chondrogenic condensation" EXACT [] synonym: "precartilage condensation" EXACT [] synonym: "precartilagenous condensation" EXACT [] @@ -110633,6 +110740,7 @@ xref: EHDAA2:0003150 xref: EMAPA:32736 is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: part_of UBERON:0004288 ! skeleton +property_value: external_definition "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." xsd:string [Term] id: UBERON:0005867 @@ -112699,7 +112807,8 @@ xref: UMLS:C0223616 xref: galen:CoccygealVertebra xref: ncithesaurus:Coccygeal_Vertebra is_a: UBERON:0001095 ! caudal vertebra -relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element +relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage element relationship: part_of UBERON:0001350 ! coccyx intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx @@ -114218,14 +114327,17 @@ property_value: homology_notes "Mammals have a third type of tympanic ear. An ex [Term] id: UBERON:0006209 -name: basioccipital cartilage condensation +name: basioccipital cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000164 xref: EHDAA:7141 xref: EMAPA:18337 xref: VHOG:0001124 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015048 ! basioccipital endochondral element relationship: develops_from UBERON:0009197 ! basioccipital pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 @@ -114243,9 +114355,12 @@ is_a: UBERON:0003104 ! mesenchyme id: UBERON:0006211 name: buccopharyngeal membrane namespace: uberon -def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] +def: "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." [MP:0012521] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked +synonym: "oral membrane" RELATED [MP:0012521] +synonym: "oral plate" RELATED [MP:0012521] synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] +synonym: "pharyngeal membrane" RELATED INCONSISTENT [MP:0012521] xref: EHDAA2:0000189 xref: EHDAA:536 xref: EMAPA:16259 @@ -114281,15 +114396,17 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006213 -name: carpus cartilage condensation +name: carpus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a carpal bone." [OBOL:automatic] xref: EHDAA2:0000221 xref: EHDAA:8544 xref: EMAPA:18102 xref: VHOG:0001123 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0010377 ! mesenchyme from somatopleure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 @@ -114302,8 +114419,11 @@ xref: EHDAA2:0000222 xref: EHDAA:6324 xref: EMAPA:17724 xref: VHOG:0000955 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0009523 ! mesenchyme of handplate +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region relationship: part_of UBERON:0009523 ! mesenchyme of handplate property_value: homologous_in NCBITaxon:7742 @@ -114505,6 +114625,7 @@ xref: EHDAA:8355 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -114580,7 +114701,10 @@ subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element property_value: homologous_in NCBITaxon:7742 [Term] @@ -114737,7 +114861,7 @@ relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 -name: humerus cartilage condensation +name: humerus cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000787 @@ -114745,7 +114869,9 @@ xref: EHDAA:6240 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005258 ! upper arm mesenchyme -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015053 ! humerus endochondral element relationship: develops_from UBERON:0006246 ! humerus pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme @@ -114761,7 +114887,9 @@ xref: EHDAA:4192 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005258 ! upper arm mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -114775,8 +114903,8 @@ xref: EHDAA2:0000809 xref: EHDAA:9568 xref: EMAPA:18029 xref: VHOG:0000964 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -114792,7 +114920,7 @@ xref: EHDAA:9024 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015017 ! incus endochondral element relationship: develops_from UBERON:0010042 ! 1st arch mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -114869,14 +114997,15 @@ property_value: homology_notes " (...) an essentially similar sequence of events [Term] id: UBERON:0006254 -name: ischial cartilage condensation +name: ischial cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000890 xref: EHDAA:9570 xref: EMAPA:26930 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015056 ! ischial endochondral element relationship: develops_from UBERON:0006255 ! ischial pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -114889,8 +115018,8 @@ xref: EHDAA2:0000891 xref: EHDAA:7153 xref: EMAPA:18348 xref: VHOG:0000962 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -115003,6 +115132,7 @@ xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: homologous_in NCBITaxon:7742 @@ -115404,22 +115534,22 @@ xref: EHDAA:9572 xref: EMAPA:18349 xref: EMAPA:26928 xref: VHOG:0000965 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006286 -name: radius cartilage condensation +name: radius cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a radius bone." [OBOL:automatic] xref: EHDAA2:0001585 xref: EHDAA:7267 xref: EMAPA:18054 xref: VHOG:0001318 -is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0010846 ! radius pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -115435,13 +115565,14 @@ xref: EHDAA:4178 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element relationship: part_of UBERON:0003327 ! mesenchyme of forearm property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006288 -name: rib cartilage condensation +name: rib cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001716 @@ -115449,7 +115580,10 @@ xref: EHDAA:8347 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015019 ! rib endochondral element relationship: develops_from UBERON:0006289 ! rib pre-cartilage condensation relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: homologous_in NCBITaxon:7742 @@ -115464,14 +115598,16 @@ xref: EHDAA:6026 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0000915 ! thoracic segment of trunk property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006290 -name: scapula cartilage condensation +name: scapula cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001777 @@ -115480,6 +115616,8 @@ xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0006291 ! scapula pre-cartilage condensation relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -115497,6 +115635,7 @@ xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton @@ -115553,6 +115692,7 @@ xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001686 ! auditory ossicle property_value: homologous_in NCBITaxon:7742 @@ -115687,16 +115827,16 @@ property_value: homology_notes "Soon after it forms, the mammalian lens becomes [Term] id: UBERON:0006306 -name: ulna cartilage condensation +name: ulna cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a ulna." [OBOL:automatic] xref: EHDAA2:0002098 xref: EHDAA:7269 xref: EMAPA:18055 xref: VHOG:0001155 -is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0010847 ! ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -119898,7 +120038,8 @@ synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0003466 ! forelimb zeugopod bone -relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] @@ -120028,8 +120169,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0009637 ! alisphenoid ossification center -relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation +relationship: develops_from UBERON:0010733 ! alisphenoid cartilage element relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0008895 ! splanchnocranium @@ -120050,7 +120192,7 @@ xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0006723 @@ -121001,6 +121143,7 @@ xref: Wikipedia:Exoccipital_condyle xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -121053,7 +121196,7 @@ property_value: external_definition "Also known as loose connective tissue. A pl id: UBERON:0006820 name: body of sternum namespace: uberon -def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MGI:anna, Wikipedia:Body_of_sternum] +def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum] @@ -121457,8 +121600,9 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles- xref: ncithesaurus:Scapula is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0015057 ! scapula endochondral element relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: develops_from UBERON:0006290 ! scapula cartilage condensation +relationship: develops_from UBERON:0006290 ! scapula cartilage element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string @@ -125939,11 +126083,12 @@ is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 -name: incus cartilage condensation +name: incus cartilage element namespace: uberon xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015017 ! incus endochondral element relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation [Term] @@ -129016,7 +129161,8 @@ namespace: uberon def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] xref: Wikipedia:Tibiotarsus is_a: UBERON:0003464 ! hindlimb bone -relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] @@ -129027,7 +129173,8 @@ def: "The tarsometatarsus is a bone that is found in the lower leg of certain te comment: Taxon notes: found in birds[VSAO] xref: Wikipedia:Tarsometatarsus is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element relationship: part_of UBERON:0001445 ! skeleton of pes [Term] @@ -129315,8 +129462,7 @@ id: UBERON:0008254 name: styliform cartilage namespace: uberon def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] @@ -133736,7 +133882,8 @@ xref: UMLS:C0003793 xref: ncithesaurus:Bone_of_the_Upper_Extremity is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex -relationship: develops_from UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: develops_from UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002102 ! forelimb intersection_of: UBERON:0002428 ! limb bone @@ -135268,6 +135415,9 @@ xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -135287,12 +135437,16 @@ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 -name: sphenoid bone cartilage condensation +name: sphenoid cartilage element namespace: uberon +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -135307,8 +135461,9 @@ xref: VHOG:0001338 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 ! basisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element property_value: homologous_in NCBITaxon:7742 [Term] @@ -135343,6 +135498,7 @@ xref: EHDAA:6033 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -135466,11 +135622,12 @@ relationship: part_of UBERON:0001716 ! secondary palate id: UBERON:0009210 name: pharyngeal membrane namespace: uberon -def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: UMLS:C1519040 xref: ncithesaurus:Pharyngeal_Membrane is_a: UBERON:0002050 ! embryonic structure +relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009213 @@ -137081,7 +137238,7 @@ is_a: UBERON:0010355 ! ossification center id: UBERON:0009638 name: orbitosphenoid ossification center namespace: uberon -comment: merge with sphenoid lesser wing cartilage condensation? +comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -138336,6 +138493,7 @@ name: lower rhombic lip namespace: uberon def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain @@ -138350,6 +138508,7 @@ synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 @@ -138439,9 +138598,14 @@ id: UBERON:0009848 name: zona limitans intrathalamica namespace: uberon def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "ZLI" EXACT [GO:0022006] +comment: Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 +synonym: "MDO" RELATED ABBREVIATION [https://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica +xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line property_value: external_definition "The border between the dorsal and ventral thalamus.[TAO]" xsd:string @@ -140502,23 +140666,24 @@ is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 -name: malleus cartilage condensation +name: malleus cartilage element namespace: uberon xref: EMAPA:18229 is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation [Term] id: UBERON:0010055 -name: stapes cartilage condensation +name: stapes cartilage element namespace: uberon comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. xref: EMAPA:18230 -is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011607 ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle @@ -140760,7 +140925,7 @@ id: UBERON:0010078 name: optic choroid vascular plexus namespace: uberon alt_id: ZFA:0005228 -comment: Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex +comment: Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] @@ -140775,7 +140940,7 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0002200 ! vasculature of head -property_value: external_definition "A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]." xsd:string +property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]." xsd:string property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string @@ -140919,13 +141084,15 @@ relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0010129 -name: femur cartilage condensation +name: femur cartilage element namespace: uberon comment: TODO - request EHDAA2 synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: part_of UBERON:0005254 ! upper leg mesenchyme @@ -143340,24 +143507,21 @@ name: otic capsule pre-cartilage condensation namespace: uberon synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0010351 -name: otic capsule cartilage condensation +name: otic capsule cartilage element namespace: uberon xref: EHDAA2:0001333 xref: EHDAA:4704 xref: EMAPA:17596 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element relationship: develops_from UBERON:0010349 ! otic capsule pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region @@ -144802,7 +144966,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsal b xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0003328 ! mesenchyme of footplate @@ -144810,13 +144976,14 @@ relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0010541 -name: tarsus cartilage condensation +name: tarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010540 ! tarsus pre-cartilage condensation relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0003328 ! mesenchyme of footplate @@ -144869,7 +145036,8 @@ xref: Wikipedia:Metacarpus xref: XAO:0003208 xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium property_value: external_definition "Segment of the forearm corresponding to the metacarpus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string @@ -144899,7 +145067,8 @@ xref: XAO:0003212 xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium property_value: external_definition "Segment of the leg corresponding to the metatarsus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string @@ -144936,6 +145105,7 @@ xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -144952,6 +145122,7 @@ xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -144968,6 +145139,7 @@ xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -144984,6 +145156,7 @@ xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -145000,88 +145173,94 @@ xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010557 -name: pedal digit 1 metatarsal cartilage condensation +name: pedal digit 1 metatarsal cartilage element namespace: uberon def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010558 -name: pedal digit 2 metatarsal cartilage condensation +name: pedal digit 2 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 2 metatarsal cartilage condensation" EXACT [] +synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010559 -name: pedal digit 3 metatarsal cartilage condensation +name: pedal digit 3 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 3 metatarsal cartilage condensation" EXACT [] +synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010560 -name: pedal digit 4 metatarsal cartilage condensation +name: pedal digit 4 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 4 metatarsal cartilage condensation" EXACT [] +synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010561 -name: pedal digit 5 metatarsal cartilage condensation +name: pedal digit 5 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "hind limb digit 5 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 5 metatarsal cartilage condensation" EXACT [] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] @@ -145125,6 +145304,7 @@ xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -145142,6 +145322,7 @@ xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -145159,6 +145340,7 @@ xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -145176,6 +145358,7 @@ xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -145193,98 +145376,104 @@ xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010570 -name: manual digit 1 metacarpus cartilage condensation +name: manual digit 1 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] -synonym: "finger 1 metacarpus cartilage condensation" EXACT [EHDAA2:0000514] -synonym: "fore limb digit 1 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 1 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010571 -name: manual digit 2 metacarpus cartilage condensation +name: manual digit 2 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] -synonym: "finger 2 metacarpus cartilage condensation" EXACT [EHDAA2:0000520] -synonym: "fore limb digit 2 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 2 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010572 -name: manual digit 3 metacarpus cartilage condensation +name: manual digit 3 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] -synonym: "finger 3 metacarpus cartilage condensation" EXACT [EHDAA2:0000526] -synonym: "fore limb digit 3 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 3 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010573 -name: manual digit 4 metacarpus cartilage condensation +name: manual digit 4 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] -synonym: "fore limb digit 4 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 4 cartilage condensation" EXACT [] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010574 -name: manual digit 5 metacarpus cartilage condensation +name: manual digit 5 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] -synonym: "fore limb digit 5 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 5 cartilage condensation" EXACT [] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] @@ -145298,6 +145487,7 @@ xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010564 ! manual digit 1 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -145313,6 +145503,7 @@ xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0005692 ! manual digit 2 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -145328,6 +145519,7 @@ xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0005693 ! manual digit 3 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -145343,6 +145535,7 @@ xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0005694 ! manual digit 4 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -145358,6 +145551,7 @@ xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0005695 ! manual digit 5 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -145373,6 +145567,7 @@ xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -145388,6 +145583,7 @@ xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -145403,6 +145599,7 @@ xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -145418,6 +145615,7 @@ xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -145433,6 +145631,7 @@ xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -145451,6 +145650,8 @@ xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0005255 ! pedal digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0005255 ! pedal digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme @@ -145470,6 +145671,8 @@ xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0005257 ! manual digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0005257 ! manual digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme @@ -145477,14 +145680,15 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010675 -name: manual digit 1 phalanx cartilage condensation +name: manual digit 1 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18066 is_a: UBERON:0010564 ! manual digit 1 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145492,14 +145696,15 @@ intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010676 -name: manual digit 2 phalanx cartilage condensation +name: manual digit 2 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18071 is_a: UBERON:0005692 ! manual digit 2 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145507,14 +145712,15 @@ intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010677 -name: manual digit 3 phalanx cartilage condensation +name: manual digit 3 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18076 is_a: UBERON:0005693 ! manual digit 3 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145522,14 +145728,15 @@ intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010678 -name: manual digit 4 phalanx cartilage condensation +name: manual digit 4 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18081 is_a: UBERON:0005694 ! manual digit 4 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145537,14 +145744,15 @@ intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010679 -name: manual digit 5 phalanx cartilage condensation +name: manual digit 5 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18086 is_a: UBERON:0005695 ! manual digit 5 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145552,14 +145760,15 @@ intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010680 -name: pedal digit 1 phalanx cartilage condensation +name: pedal digit 1 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18107 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145567,14 +145776,15 @@ intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010681 -name: pedal digit 2 phalanx cartilage condensation +name: pedal digit 2 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18112 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145582,14 +145792,15 @@ intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010682 -name: pedal digit 3 phalanx cartilage condensation +name: pedal digit 3 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18117 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145597,14 +145808,15 @@ intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010683 -name: pedal digit 4 phalanx cartilage condensation +name: pedal digit 4 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18122 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145612,14 +145824,15 @@ intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010684 -name: pedal digit 5 phalanx cartilage condensation +name: pedal digit 5 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18127 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145627,14 +145840,15 @@ intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010685 -name: pedal digit phalanx cartilage condensation +name: pedal digit phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] -synonym: "foot digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0005255 ! pedal digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation relationship: part_of UBERON:0005255 ! pedal digit mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145642,14 +145856,15 @@ intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme [Term] id: UBERON:0010686 -name: manual digit phalanx cartilage condensation +name: manual digit phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0005257 ! manual digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -145666,6 +145881,7 @@ synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: VHOG:0000948 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: part_of UBERON:0005255 ! pedal digit mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -145759,14 +145975,17 @@ intersection_of: part_of UBERON:0002387 ! pes [Term] id: UBERON:0010697 -name: pedal digit metatarsal cartilage condensation +name: pedal digit metatarsal cartilage element namespace: uberon comment: Editor note: EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32951 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation [Term] @@ -145781,20 +146000,24 @@ synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: part_of UBERON:0005257 ! manual digit mesenchyme property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010699 -name: manual digit metacarpus cartilage condensation +name: manual digit metacarpus cartilage element namespace: uberon -synonym: "finger metacarpus cartilage condensation" EXACT [] -synonym: "fore limb digit metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpal cartilage condensation" EXACT [] -synonym: "metacarpus cartilage condensation" EXACT [] +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -145804,9 +146027,9 @@ name: phalanx pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32720 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element relationship: part_of UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0010702 ! digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -145814,13 +146037,13 @@ intersection_of: part_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0010701 -name: phalanx cartilage condensation +name: phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32721 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation relationship: part_of UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0010702 ! digit mesenchyme @@ -146002,24 +146225,26 @@ property_value: external_definition "Skeletal system that consists of the paired [Term] id: UBERON:0010714 -name: iliac cartilage condensation +name: iliac cartilage element namespace: uberon xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element relationship: develops_from UBERON:0006247 ! iliac pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010718 -name: pubic cartilage condensation +name: pubic cartilage element namespace: uberon xref: EHDAA2:0001573 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element relationship: develops_from UBERON:0006285 ! pubic pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -146074,6 +146299,8 @@ xref: Wikipedia:Cuneiform_%28anatomy%29 xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png xref: ncithesaurus:Cuneiform_Bone_of_the_Foot is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string @@ -146149,8 +146376,10 @@ id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation namespace: uberon xref: EHDAA2:0003449 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -146163,22 +146392,28 @@ xref: EHDAA2:0003448 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010733 -name: alisphenoid cartilage condensation +name: alisphenoid cartilage element namespace: uberon synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element relationship: develops_from UBERON:0010732 ! alisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0010737 @@ -146192,6 +146427,9 @@ synonym: "tarsal 4" EXACT [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -146206,6 +146444,9 @@ synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -146223,6 +146464,9 @@ synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string [Term] @@ -146295,19 +146539,20 @@ synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:00017 xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0010745 -name: sacral vertebra cartilage condensation +name: sacral vertebra cartilage element namespace: uberon synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0005179 ! pelvic region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage relationship: develops_from UBERON:0010744 ! sacral vertebra pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column @@ -146412,10 +146657,13 @@ relationship: part_of UBERON:0004339 ! vault of skull [Term] id: UBERON:0010752 -name: exoccipital cartilage condensation +name: exoccipital cartilage element namespace: uberon xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -146490,6 +146738,7 @@ name: rib 8 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VIII" EXACT LATIN [] synonym: "eighth rib" EXACT [FMA:8120] xref: FMA:8120 xref: MA:0001408 @@ -146545,26 +146794,30 @@ name: calcaneum pre-cartilage condensation namespace: uberon synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010842 -name: calcaneum cartilage condensation +name: calcaneum cartilage element namespace: uberon -synonym: "calcaneous cartilage condensation" EXACT [] +synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010843 -name: clavicle cartilage condensation +name: clavicle cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a clavicle." [OBOL:automatic] comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] @@ -146591,7 +146844,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a radius b comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -146604,33 +146859,36 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a ulna." [ xref: EHDAA2:0002100 xref: EHDAA:6226 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010848 -name: radius-ulna cartilage condensation +name: radius-ulna cartilage element namespace: uberon comment: AO notes: note that this is not represented as a single unit in EHDAA2 synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010849 -name: tibia cartilage condensation +name: tibia cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EMAPA:18155 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton @@ -146642,20 +146900,22 @@ namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0010851 -name: fibula cartilage condensation +name: fibula cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] xref: EMAPA:18154 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -146670,7 +146930,9 @@ synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA2:0000509 xref: EHDAA:6196 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -146851,10 +147113,12 @@ property_value: present_in_taxon NCBITaxon:9590 [Term] id: UBERON:0010881 -name: limb bone cartilage condensation +name: limb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation relationship: part_of UBERON:0002091 ! appendicular skeleton @@ -146864,20 +147128,24 @@ name: limb bone pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0010883 -name: forelimb bone cartilage condensation +name: forelimb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a forelimb bone." [OBOL:automatic] subset: grouping_class ! Subset consisting of classes creating for grouping purposes -synonym: "wing bone cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] -is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010884 @@ -146887,20 +147155,25 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a forelimb subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010885 -name: hindlimb bone cartilage condensation +name: hindlimb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] -is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010886 @@ -146908,9 +147181,12 @@ name: hindlimb bone pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb +intersection_of: UBERON:0005866 ! pre-cartilage condensation +intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010887 @@ -147091,10 +147367,12 @@ is_a: UBERON:0007197 ! hermaphroditic organism [Term] id: UBERON:0010900 -name: tarsometatarsus cartilage condensation +name: tarsometatarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation relationship: part_of UBERON:0001445 ! skeleton of pes @@ -147103,15 +147381,18 @@ id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010902 -name: tibiotarsus cartilage condensation +name: tibiotarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -147120,7 +147401,9 @@ id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] @@ -147938,7 +148221,7 @@ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0011002 -name: articular cartilage condensation +name: articular cartilage element namespace: uberon synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] xref: TAO:0001670 @@ -148373,7 +148656,7 @@ is_a: UBERON:0001271 ! pelvic girdle region [Term] id: UBERON:0011094 -name: vertebra cartilage condensation +name: vertebra cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a vertebral column." [OBOL:automatic] comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups @@ -148382,6 +148665,7 @@ xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010913 ! vertebral element +is_a: UBERON:0015005 ! vertebra endochondral element relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation relationship: part_of UBERON:0001130 ! vertebral column intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148396,8 +148680,8 @@ def: "A pre-cartilage condensation that is part of a vertebral column." [OBOL:au synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0001130 ! vertebral column intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -149101,15 +149385,16 @@ is_a: UBERON:0001725 ! cranial synchondrosis [Term] id: UBERON:0011162 -name: supraoccipital cartilage condensation +name: supraoccipital cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -149121,8 +149406,8 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a supraocc synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA2:0001963 xref: EHDAA:9534 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0009617 ! head paraxial mesoderm relationship: part_of UBERON:0002241 ! chondrocranium @@ -150138,10 +150423,8 @@ name: autopod bone namespace: uberon def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone -relationship: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0006717 ! autopodial skeleton -intersection_of: UBERON:0001474 ! bone element -intersection_of: part_of UBERON:0002470 ! autopod region +is_a: UBERON:0015063 ! autopod endochondral element +relationship: develops_from UBERON:0015064 ! autopod cartilage property_value: implements_design_pattern http://purl.obolibrary.org/obo/uberon/references/reference_0000015 [Term] @@ -152045,7 +152328,7 @@ is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme -relationship: part_of UBERON:0001688 ! incus +relationship: part_of UBERON:0001688 ! incus bone [Term] id: UBERON:0011601 @@ -152165,12 +152448,13 @@ name: hyomandibular element namespace: uberon def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010522 ! replacement element +is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string @@ -152936,6 +153220,8 @@ namespace: uberon def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:automatic] is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0014395 ! proximal mesopodial bone +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0011683 @@ -153772,6 +154058,8 @@ intersection_of: enclosed_by UBERON:0002087 ! atrioventricular canal id: UBERON:0011820 name: atrioventricular region namespace: uberon +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [GO:0003294] xref: EHDAA2:0004149 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -155682,12 +155970,14 @@ is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012080 -name: patella cartilage condensation +name: patella cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a patella." [OBOL:automatic] comment: Note some sources have this as intramembranous xref: EMAPA:19140 -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: develops_from UBERON:0012081 ! patella pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -155699,6 +155989,7 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a patella. xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0006256 ! knee joint primordium @@ -156131,8 +156422,8 @@ synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED PLURAL [] synonym: "os centrale" EXACT [FMA:77232] xref: FMA:77232 -is_a: UBERON:0003656 ! mesopodium bone -relationship: part_of UBERON:0009878 ! mesopodial skeleton +is_a: UBERON:0015067 ! centrale endochondral element +relationship: develops_from UBERON:0015077 ! centrale cartilage [Term] id: UBERON:0012132 @@ -158511,6 +158802,7 @@ name: hemopoietic tissue namespace: uberon def: "Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue" [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] comment: Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] @@ -161823,10 +162115,10 @@ intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 -name: caudal vertebra cartilage condensation +name: caudal vertebra cartilage element namespace: uberon is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation relationship: part_of UBERON:0006076 ! caudal region of vertebral column @@ -161834,17 +162126,18 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation namespace: uberon +is_a: UBERON:0005174 ! dorsal region organ is_a: UBERON:0011095 ! vertebra pre-cartilage condensation relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013505 -name: cervical vertebra cartilage condensation +name: cervical vertebra cartilage element namespace: uberon synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -161853,15 +162146,17 @@ id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0013507 -name: thoracic vertebra cartilage condensation +name: thoracic vertebra cartilage element namespace: uberon synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -161869,18 +162164,18 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation namespace: uberon -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013509 -name: lumbar vertebra cartilage condensation +name: lumbar vertebra cartilage element namespace: uberon synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 -is_a: UBERON:0005173 ! abdominal segment organ -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation relationship: part_of UBERON:0006074 ! lumbar region of vertebral column @@ -161889,6 +162184,7 @@ id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] @@ -161950,11 +162246,12 @@ is_a: UBERON:0013515 ! subdivision of uterine tube [Term] id: UBERON:0013517 -name: coccygeal vertebra cartilage condensation +name: coccygeal vertebra cartilage element namespace: uberon synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] xref: EHDAA2:0000260 -is_a: UBERON:0013503 ! caudal vertebra cartilage condensation +is_a: UBERON:0013503 ! caudal vertebra cartilage element +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element relationship: develops_from UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation [Term] @@ -161962,6 +162259,7 @@ id: UBERON:0013518 name: coccygeal vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element [Term] id: UBERON:0013519 @@ -163428,7 +163726,7 @@ property_value: external_definition "Anatomical region comprising the peripheral id: UBERON:0013683 name: left dorsal thalamus namespace: uberon -synonym: "left thalamus" EXACT [FMA:258716] +synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus @@ -163436,7 +163734,7 @@ is_a: UBERON:0004703 ! dorsal thalamus id: UBERON:0013684 name: right dorsal thalamus namespace: uberon -synonym: "right thalamus" EXACT [FMA:258714] +synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus @@ -164934,7 +165232,7 @@ xref: FMA:52770 xref: SCTID:368921009 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0014398 @@ -168122,6 +168420,7 @@ id: UBERON:0014734 name: allocortex namespace: uberon def: "The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -168155,9 +168454,11 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0014736 name: periallocortex namespace: uberon -synonym: "periallocortex" RELATED [NeuroNames:2315] +def: "agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] xref: NeuroNames:2315 -is_a: UBERON:0014734 ! allocortex +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 @@ -169659,6 +169960,1290 @@ namespace: uberon is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 ! cerebral cortex +[Term] +id: UBERON:0014951 +name: proisocortex +namespace: uberon +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: NeuroNames:2311 +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +namespace: uberon +def: "A radius bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius element" EXACT [UBERON:endochondral] +synonym: "radius skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +namespace: uberon +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius-ulna element" EXACT [UBERON:endochondral] +synonym: "radius-ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +namespace: uberon +def: "A ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ulna element" EXACT [UBERON:endochondral] +synonym: "ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +namespace: uberon +def: "A tibia bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibia element" EXACT [UBERON:endochondral] +synonym: "tibia skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation + +[Term] +id: UBERON:0015005 +name: vertebra endochondral element +namespace: uberon +def: "A vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "vertebra element" EXACT [UBERON:endochondral] +synonym: "vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001130 ! vertebral column +union_of: UBERON:0002412 ! vertebra +union_of: UBERON:0011094 ! vertebra cartilage element +union_of: UBERON:0011095 ! vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015006 +name: coccygeal vertebra endochondral element +namespace: uberon +def: "A coccygeal vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "coccygeal vertebra element" EXACT [UBERON:endochondral] +synonym: "coccygeal vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001130 ! vertebral column +union_of: UBERON:0006070 ! coccygeal vertebra +union_of: UBERON:0013517 ! coccygeal vertebra cartilage element +union_of: UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +namespace: uberon +def: "A cervical vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "cervical vertebra element" EXACT [UBERON:endochondral] +synonym: "cervical vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0006072 ! cervical region of vertebral column +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +namespace: uberon +def: "A thoracic vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "thoracic vertebra element" EXACT [UBERON:endochondral] +synonym: "thoracic vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +namespace: uberon +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "lumbar vertebra element" EXACT [UBERON:endochondral] +synonym: "lumbar vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005173 ! abdominal segment organ +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +namespace: uberon +def: "A sacral vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sacral vertebra element" EXACT [UBERON:endochondral] +synonym: "sacral vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +namespace: uberon +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibiotarsus element" EXACT [UBERON:endochondral] +synonym: "tibiotarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0001441 ! hindlimb skeleton +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +namespace: uberon +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsometatarsus element" EXACT [UBERON:endochondral] +synonym: "tarsometatarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0001445 ! skeleton of pes +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +namespace: uberon +def: "A fibula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "fibula element" EXACT [UBERON:endochondral] +synonym: "fibula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +namespace: uberon +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "calcaneum element" EXACT [UBERON:endochondral] +synonym: "calcaneum skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +namespace: uberon +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "supraoccipital element" EXACT [UBERON:endochondral] +synonym: "supraoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +namespace: uberon +def: "A stapes bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "stapes element" EXACT [UBERON:endochondral] +synonym: "stapes skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element + +[Term] +id: UBERON:0015017 +name: incus endochondral element +namespace: uberon +def: "A incus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "incus element" EXACT [UBERON:endochondral] +synonym: "incus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +namespace: uberon +def: "A malleus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "malleus" RELATED [UBERON:endochondral] +synonym: "malleus element" EXACT [UBERON:endochondral] +synonym: "malleus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element + +[Term] +id: UBERON:0015019 +name: rib endochondral element +namespace: uberon +def: "A rib bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "rib element" EXACT [UBERON:endochondral] +synonym: "rib skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0014478 ! rib skeletal system +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation + +[Term] +id: UBERON:0015020 +name: otic capsule endochondral element +namespace: uberon +def: "A otic capsule bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "otic capsule element" EXACT [UBERON:endochondral] +synonym: "otic capsule skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region +union_of: UBERON:0004637 ! otic capsule +union_of: UBERON:0010349 ! otic capsule pre-cartilage condensation +union_of: UBERON:0010351 ! otic capsule cartilage element + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +namespace: uberon +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "forelimb skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +namespace: uberon +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "hindlimb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb bone pre-cartilage condensation + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +namespace: uberon +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "phalanx element" EXACT [UBERON:endochondral] +synonym: "phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0010543 ! acropodial skeleton +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +namespace: uberon +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +namespace: uberon +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0001463 ! manual digit 1 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +namespace: uberon +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003622 ! manual digit 2 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +namespace: uberon +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003623 ! manual digit 3 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +namespace: uberon +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003624 ! manual digit 4 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +namespace: uberon +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003625 ! manual digit 5 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +namespace: uberon +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +namespace: uberon +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003631 ! pedal digit 1 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +namespace: uberon +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003632 ! pedal digit 2 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +namespace: uberon +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003633 ! pedal digit 3 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +namespace: uberon +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003634 ! pedal digit 4 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +namespace: uberon +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003635 ! pedal digit 5 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +namespace: uberon +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +namespace: uberon +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +namespace: uberon +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +namespace: uberon +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +namespace: uberon +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +namespace: uberon +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +namespace: uberon +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +namespace: uberon +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "basioccipital element" EXACT [UBERON:endochondral] +synonym: "basioccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +namespace: uberon +def: "A carpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "carpus element" EXACT [UBERON:endochondral] +synonym: "carpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +namespace: uberon +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsus element" EXACT [UBERON:endochondral] +synonym: "tarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +namespace: uberon +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "exoccipital element" EXACT [UBERON:endochondral] +synonym: "exoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element + +[Term] +id: UBERON:0015052 +name: femur endochondral element +namespace: uberon +def: "A femur bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "femur element" EXACT [UBERON:endochondral] +synonym: "femur skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0001441 ! hindlimb skeleton +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +namespace: uberon +def: "A humerus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "humerus element" EXACT [UBERON:endochondral] +synonym: "humerus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0003822 ! forelimb stylopod +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +namespace: uberon +def: "A iliac bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "iliac element" EXACT [UBERON:endochondral] +synonym: "iliac skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +namespace: uberon +def: "A pubic bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pubic element" EXACT [UBERON:endochondral] +synonym: "pubic skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +namespace: uberon +def: "A ischial bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ischial element" EXACT [UBERON:endochondral] +synonym: "ischial skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +namespace: uberon +def: "A scapula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "scapula element" EXACT [UBERON:endochondral] +synonym: "scapula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +namespace: uberon +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "alisphenoid element" EXACT [UBERON:endochondral] +synonym: "alisphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +namespace: uberon +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "orbitosphenoid element" EXACT [UBERON:endochondral] +synonym: "orbitosphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +namespace: uberon +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sphenoid bone skeletal element" BROAD [UBERON:endochondral] +synonym: "sphenoid element" EXACT [UBERON:endochondral] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0011156 ! facial skeleton +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element + +[Term] +id: UBERON:0015061 +name: limb endochondral element +namespace: uberon +def: "A limb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "limb bone endochondral element" EXACT [UBERON:endochondral] +synonym: "limb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0004381 ! skeleton of limb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation + +[Term] +id: UBERON:0015062 +name: bone condensation +namespace: uberon +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +namespace: uberon +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0006717 ! autopodial skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015064 +name: autopod cartilage +namespace: uberon +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +namespace: uberon +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +comment: Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +namespace: uberon +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015068 ! distal carpal endochondral element + +[Term] +id: UBERON:0015077 +name: centrale cartilage +namespace: uberon +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015081 +name: proximal tarsal bone endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015099 +name: distal tarsal bone endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +namespace: uberon +def: "The remnant of the lamina terminalis in the developed brain." [UBERON:cjm] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: SCTID:361483008 +xref: VHOG:0001547 +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0014532 ! lamina of cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter +relationship: transformation_of UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: UBERON:1000000 name: chin ventral margin @@ -170196,6 +171781,24 @@ is_a: UBERON:0001982 ! capillary is_a: UBERON:0004638 ! blood vessel endothelium property_value: external_definition "Blood vessel endothelium that has pores that allow passage small molecules and proteins[ZFA]." xsd:string +[Term] +id: UBERON:4300081 +name: mesopterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:4300082 +name: metapterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:4300083 +name: propterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + [Typedef] id: adjacent_to name: adjacent_to @@ -170933,6 +172536,12 @@ inverse_of: in_proximal_side_of ! in_proximal_side_of xref: BSPO:0000125 is_a: part_of ! part_of +[Typedef] +id: in_dorsal_side_of +name: in_dorsal_side_of +namespace: uberon +is_a: part_of ! part_of + [Typedef] id: in_lateral_side_of name: in_lateral_side_of @@ -171003,6 +172612,12 @@ holds_over_chain: overlaps in_taxon ! in taxon holds_over_chain: part_of in_taxon ! in taxon holds_over_chain: supplies in_taxon ! in taxon +[Typedef] +id: in_ventral_side_of +name: in_ventral_side_of +namespace: uberon +is_a: part_of ! part_of + [Typedef] id: innervated name: innervated (UNDECLARED) @@ -172946,6 +174561,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -173000,6 +174616,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -182153,6 +183770,7 @@ comment: The supraoccipital crest may be small and restricted to the dorsal part synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -184855,6 +186473,7 @@ name: spina occipitalis namespace: uberon/phenoscape-anatomy def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -193091,8 +194710,7 @@ id: UBERON:3000921 name: element Y of hind mesopodium namespace: uberon/phenoscape-anatomy def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -193655,8 +195273,8 @@ id: UBERON:3010045 name: centrale 1 namespace: uberon/phenoscape-anatomy def: "Distal-most centrale when two are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -193688,8 +195306,8 @@ id: UBERON:3010060 name: centrale (fore) namespace: uberon/phenoscape-anatomy def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] -is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -193766,8 +195384,8 @@ id: UBERON:3010073 name: centrale 2 namespace: uberon/phenoscape-anatomy def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -194452,8 +196070,9 @@ name: postminimus namespace: uberon/phenoscape-anatomy def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -203420,7 +205039,7 @@ is_a: UBERON:0013774 ! diaphysis of metatarsal bone [Term] id: FMA:33923 -is_a: UBERON:0000313 ! tibial cartilage +is_a: UBERON:0000313 ! tibial cartilage tissue [Term] id: FMA:34830 @@ -205913,15 +207532,15 @@ is_a: UBERON:0001686 ! auditory ossicle [Term] id: FMA:52751 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: FMA:52752 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: FMA:52753 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: FMA:52760 @@ -208761,7 +210380,7 @@ is_a: UBERON:0003029 ! stria terminalis [Term] id: FMA:61975 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere [Term] id: FMA:61976 @@ -221528,15 +223147,15 @@ is_a: UBERON:0001858 ! posterior semicircular duct [Term] id: MA:0001215 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: MA:0001216 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: MA:0001217 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: MA:0001218 @@ -233682,7 +235301,7 @@ is_a: UBERON:0000464 ! anatomical space [Term] id: ZFA:0001644 -is_a: UBERON:0011002 ! articular cartilage condensation +is_a: UBERON:0011002 ! articular cartilage element [Term] id: ZFA:0001645 diff --git a/uberon-taxmod-amniote.obo b/uberon-taxmod-amniote.obo index 693939eec8..6768cb1df1 100644 --- a/uberon-taxmod-amniote.obo +++ b/uberon-taxmod-amniote.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: uberon/releases/2013-12-15/ext.owl +data-version: uberon/releases/2014-01-11/ext.owl import: http://purl.obolibrary.org/obo/uberon/chebi_import.owl import: http://purl.obolibrary.org/obo/uberon/cl_import.owl import: http://purl.obolibrary.org/obo/uberon/envo_import.owl @@ 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)))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( 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ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( 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ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) 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)))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( 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ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n) treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-reverse-genus-differentia: ABA part_of NCBITaxon:10088 treat-xrefs-as-reverse-genus-differentia: BSA part_of NCBITaxon:7712 @@ -4049,10 +4049,10 @@ relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 -name: tibial cartilage +name: tibial cartilage tissue def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] -comment: TODO -synonym: "cartilage of tibia" EXACT [FMA:33923] +comment: This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia +synonym: "cartilage of tibia" RELATED [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue @@ -6180,7 +6180,7 @@ relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0000453 name: decidua basalis -def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MGI:anna] +def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity subset: efo_slim synonym: "basal decidua" RELATED [MGI:anna] @@ -7206,7 +7206,7 @@ relationship: part_of UBERON:0001073 ! ileocecal junction [Term] id: UBERON:0000642 name: suspensory ligament of duodenum -def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] @@ -7746,6 +7746,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001290", ontology="TAO", source="ZFIN:curator"} +property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string {source="MP:0012522", taxon="NCBITaxon:40674"} property_value: has_relational_adjective "stomodeal" xsd:string [Term] @@ -8907,7 +8908,11 @@ xref: Wikipedia:Humerus xref: XAO:0003210 is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone -relationship: develops_from UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006245 ! humerus cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton @@ -9009,7 +9014,11 @@ xref: UMLS:C0040184 {source="ncithesaurus:Tibia"} xref: Wikipedia:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000890", ontology="AAO", source="AAO:LAP"} @@ -9069,7 +9078,11 @@ xref: XAO:0003214 is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010129 ! femur cartilage element relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton @@ -12208,10 +12221,10 @@ xref: XAO:0003078 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0015010 ! sacral vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column -relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] @@ -12488,7 +12501,7 @@ is_a: UBERON:0002495 ! long bone is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010905 ! clavicle bone primordium -relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage condensation +relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage element relationship: in_lateral_side_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO"} @@ -17039,7 +17052,11 @@ xref: Wikipedia:Ilium_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010714 ! iliac cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -17072,7 +17089,11 @@ xref: Wikipedia:Ischium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -17101,7 +17122,11 @@ xref: Wikipedia:Pubis_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -20636,7 +20661,11 @@ xref: VSAO:0005012 xref: Wikipedia:Radius_(bone) is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006286 ! radius cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000788", ontology="AAO", source="AAO:LAP"} @@ -20665,7 +20694,11 @@ xref: VSAO:0005013 xref: Wikipedia:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006306 ! ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000789", ontology="AAO", source="AAO:LAP"} @@ -20806,6 +20839,12 @@ xref: UMLS:C0223736 {source="ncithesaurus:Trapezial_Bone"} xref: VSAO:0005043 xref: Wikipedia:Trapezium_(bone) is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001431 @@ -20835,6 +20874,12 @@ xref: UMLS:C0223741 {source="ncithesaurus:Trapezoid_Bone"} xref: VSAO:0005044 xref: Wikipedia:Trapezoid_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000848", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string {source="Wikipedia:Trapezoid_bone"} @@ -20866,6 +20911,12 @@ xref: UMLS:C0223733 {source="ncithesaurus:Capitate_Bone"} xref: VSAO:0005045 xref: Wikipedia:Capitate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000849", ontology="AAO", source="AAO:LAP"} [Term] @@ -20897,6 +20948,12 @@ xref: UMLS:C0560737 {source="ncithesaurus:Hamate_Bone"} xref: VSAO:0005046 xref: Wikipedia:Hamate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000850", ontology="AAO", source="AAO:LAP"} [Term] @@ -20957,9 +21014,10 @@ xref: UMLS:C0007285 {source="ncithesaurus:Carpal_Bone"} xref: Wikipedia:Carpus is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004452 ! carpal region -relationship: develops_from UBERON:0006213 ! carpus cartilage condensation +relationship: develops_from UBERON:0006213 ! carpus cartilage element relationship: part_of UBERON:0004452 ! carpal region relationship: part_of UBERON:0009880 ! carpal skeleton @@ -20994,9 +21052,10 @@ xref: Wikipedia:Phalanges_of_the_hand is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002389 ! manual digit -relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage condensation +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000947", ontology="AAO", source="AAO:LAP"} @@ -21279,7 +21338,11 @@ xref: UMLS:C0016068 {source="ncithesaurus:Fibula"} xref: Wikipedia:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000891", ontology="AAO", source="AAO:LAP"} @@ -21312,9 +21375,10 @@ xref: SCTID:108372004 xref: UMLS:C0039316 {source="ncithesaurus:Tarsal_Bone"} is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004454 ! tarsal region -relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation +relationship: develops_from UBERON:0010541 ! tarsus cartilage element relationship: part_of UBERON:0004454 ! tarsal region relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -21340,6 +21404,7 @@ xref: Wikipedia:Metatarsal_bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0000983 ! metatarsus region relationship: connected_to UBERON:0001447 ! tarsal bone @@ -21377,9 +21442,10 @@ xref: Wikipedia:Phalanges_of_the_foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002387 ! pes -relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage condensation +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0002387 ! pes relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium @@ -21413,7 +21479,11 @@ xref: UMLS:C0006655 {source="ncithesaurus:Calcaneum"} xref: VSAO:0005016 xref: Wikipedia:Calcaneus is_a: UBERON:0011679 ! proximal tarsal bone -relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton property_value: has_relational_adjective "calcaneal" xsd:string @@ -21485,7 +21555,13 @@ xref: UMLS:C1512869 {source="ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005052 xref: Wikipedia:Medial_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000918", ontology="AAO", source="AAO:LAP"} @@ -21523,7 +21599,13 @@ xref: UMLS:C1513292 {source="ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005053 xref: Wikipedia:Intermediate_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000919", ontology="AAO", source="AAO:LAP"} @@ -21560,7 +21642,13 @@ xref: UMLS:C1517036 {source="ncithesaurus:External_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005054 xref: Wikipedia:Lateral_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string {date_retrieved="2012-09-17", source="http://palaeos.com/vertebrates/glossary/glossaryE.html"} property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000920", ontology="AAO", source="AAO:LAP"} @@ -22299,9 +22387,12 @@ xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone -intersection_of: UBERON:0001435 ! carpal bone -intersection_of: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton -relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001481 @@ -22313,6 +22404,11 @@ xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015069 ! distal carpal cartilage relationship: distally_connected_to UBERON:0002374 ! metacarpal bone relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000847", ontology="AAO", source="AAO:LAP"} @@ -25168,7 +25264,7 @@ xref: Wikipedia:Stapedius_muscle is_a: UBERON:0001577 ! facial nerve muscle is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation -relationship: has_muscle_insertion UBERON:0001687 ! stapes +relationship: has_muscle_insertion UBERON:0001687 ! stapes bone relationship: innervated_by UBERON:0001647 ! facial nerve relationship: part_of UBERON:0001756 ! middle ear property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000813"} @@ -27312,7 +27408,11 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008193 ! pneumatized bone -relationship: develops_from UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0009193 ! sphenoid cartilage element relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -27643,9 +27743,9 @@ property_value: homology_notes "Additional structural analysis within a phylogen [Term] id: UBERON:0001687 -name: stapes +name: stapes bone def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [doi:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes] -comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] +comment: Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] @@ -27676,16 +27776,21 @@ xref: Wikipedia:Stapes is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004368 ! Reichert's cartilage -relationship: develops_from UBERON:0010055 ! stapes cartilage condensation +relationship: develops_from UBERON:0010055 ! stapes cartilage element property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000688"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001688 -name: incus +name: incus bone def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: uberon_slim +synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 @@ -27702,16 +27807,22 @@ xref: VHOG:0000689 xref: Wikipedia:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone -relationship: develops_from UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0007374 ! incus cartilage element property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000689"} property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000689", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} [Term] id: UBERON:0001689 -name: malleus +name: malleus bone def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus] +synonym: "malleus" BROAD [MA:0001216] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 @@ -27726,8 +27837,12 @@ xref: VHOG:0000690 xref: Wikipedia:Malleus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0003107 ! Meckel's cartilage -relationship: develops_from UBERON:0010054 ! malleus cartilage condensation +relationship: develops_from UBERON:0010054 ! malleus cartilage element property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000690"} property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} @@ -27847,8 +27962,13 @@ xref: VHOG:0001152 xref: Wikipedia:Basilar_part_of_occipital_bone xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region @@ -27888,9 +28008,14 @@ xref: VHOG:0001151 xref: Wikipedia:Lateral_parts_of_occipital_bone xref: ZFA:0000661 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009635 ! parachordal cartilage -relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -33977,12 +34102,10 @@ property_value: homology_notes "Classical anatomical studies subdivided the vert id: UBERON:0001897 name: dorsal plus ventral thalamus def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] -comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: efo_slim subset: uberon_slim subset: vertebrate_core -synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954] -synonym: "Th" BROAD ABBREVIATION [PMID:23375746] +synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954, PMID:23375746] synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] synonym: "thalami" RELATED PLURAL [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] @@ -34136,11 +34259,12 @@ comment: Some sources treat the subthalamus as distinct from the thalamus, separ subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] -synonym: "prethalamus" EXACT DEVELOPMENTAL [] +synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] synonym: "SbTh" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_708] -synonym: "subthalamic region" EXACT [] -synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamic region" EXACT [FMA:62010, NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [NIF_GrossAnatomy:birnlex_708] +synonym: "ventral thalamus" EXACT [GO:0021539] synonym: "ventral thalamus" EXACT [MA:0000181] xref: BAMS:SbTh xref: BAMS:Ventral_thalamus @@ -34165,7 +34289,6 @@ xref: Wikipedia:Subthalamus xref: ZFA:0000458 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus -property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string {source="GO:0021539"} property_value: has_relational_adjective "subthalamic" xsd:string [Term] @@ -35766,7 +35889,7 @@ synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] -synonym: "isocortex" EXACT [] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] @@ -43115,7 +43238,7 @@ property_value: homology_notes "There are more than 50,000 extant vertebrate spe [Term] id: UBERON:0002205 name: manubrium of sternum -def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: uberon_slim synonym: "manubrium" BROAD [] @@ -43690,7 +43813,11 @@ xref: ZFA:0000538 is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: develops_from UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006288 ! rib cartilage element relationship: in_lateral_side_of UBERON:0014478 ! rib skeletal system relationship: part_of UBERON:0014478 ! rib skeletal system property_value: external_definition "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000538", ontology="TAO", source="ZFIN:curator"} @@ -44778,7 +44905,7 @@ def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. subset: uberon_slim subset: vertebrate_core -synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery] +synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] @@ -46754,9 +46881,10 @@ xref: Wikipedia:Thoracic_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column -relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage condensation +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0006073 ! thoracic region of vertebral column @@ -47662,6 +47790,7 @@ xref: Wikipedia:Metacarpal_bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004453 ! metacarpus region relationship: connected_to UBERON:0001435 ! carpal bone @@ -48146,8 +48275,7 @@ property_value: external_definition "One of the fingers of the manus.[AAO]" xsd: [Term] id: UBERON:0002390 name: hematopoietic system -def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system] -comment: This class was created automatically from a combination of ontologies +def: "Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes." [Wikipedia:Haematopoiesis] subset: efo_slim subset: uberon_slim subset: vertebrate_core @@ -48175,7 +48303,7 @@ xref: SCTID:362587009 xref: TAO:0005023 xref: UMLS:C0018957 {source="ncithesaurus:Hematopoietic_System"} xref: VHOG:0001624 -xref: Wikipedia:Hematopoietic_system +xref: Wikipedia:Haematopoiesis xref: XAO:0000122 xref: ZFA:0005023 is_a: UBERON:0000467 ! anatomical system @@ -48873,7 +49001,11 @@ xref: ZFA:0001189 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: develops_from UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element +intersection_of: UBERON:0015005 ! vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011094 ! vertebra cartilage element relationship: part_of UBERON:0001130 ! vertebral column property_value: external_definition "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001189", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000691", ontology="AAO", source="AAO:Pugener_and_Maglia_2008"} @@ -48903,9 +49035,10 @@ xref: XAO:0003076 is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0004451 ! trunk or cervical vertebra +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column -relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage condensation +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element relationship: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -48931,9 +49064,10 @@ xref: Wikipedia:Lumbar_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column -relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage condensation +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] @@ -49333,9 +49467,10 @@ xref: SCTID:304149004 xref: UMLS:C0582791 {source="ncithesaurus:Bone_of_the_Extremity"} is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002101 ! limb -relationship: develops_from UBERON:0010881 ! limb bone cartilage condensation +relationship: develops_from UBERON:0010881 ! limb cartilage element relationship: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0004381 ! skeleton of limb @@ -50680,6 +50815,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbito-sphnocde@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [UBERON:cjm] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -50693,7 +50829,11 @@ xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone @@ -51115,7 +51255,7 @@ xref: SCTID:279685009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001687 ! stapes +relationship: part_of UBERON:0001687 ! stapes bone [Term] id: UBERON:0002497 @@ -55229,12 +55369,11 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0002689 name: supraoptic crest def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis] -comment: AO notes: NIF has two classes here +comment: AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] -synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] -synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "OVLT" EXACT ABBREVIATION [] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] @@ -62965,7 +63104,7 @@ property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001224"} [Term] id: UBERON:0003054 name: roof plate -def: "a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +def: "a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim subset: vertebrate_core @@ -62975,8 +63114,10 @@ xref: AAO:0011097 xref: NeuroNames:1371 xref: TAO:0007058 xref: ZFA:0007058 -is_a: UBERON:0005423 ! developing anatomical structure -relationship: part_of UBERON:0000922 ! embryo +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: in_dorsal_side_of UBERON:0001049 ! neural tube relationship: part_of UBERON:0001049 ! neural tube property_value: external_definition "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0007058", ontology="TAO", source="ZFIN:curator"} @@ -63655,7 +63796,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic [Term] id: UBERON:0003079 name: floor plate -def: "A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: efo_slim subset: uberon_slim @@ -63674,11 +63815,15 @@ xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: Wikipedia:Floor_plate xref: ZFA:0000022 -is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002328 ! notochord relationship: develops_from UBERON:0007286 ! presumptive floor plate -relationship: part_of UBERON:0000922 ! embryo -relationship: part_of UBERON:0001016 ! nervous system +relationship: in_ventral_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube +property_value: dc-description " A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." xsd:string {source="Wikipedia:Floor_plate"} property_value: external_definition "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011041", ontology="AAO", source="GO:0021508", source="PMID:15738958"} [Term] @@ -65826,9 +65971,10 @@ xref: VSAO:0000199 xref: Wikipedia:Phalanx_bones is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002544 ! digit -relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation +relationship: develops_from UBERON:0010701 ! phalanx cartilage element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0010543 ! acropodial skeleton property_value: has_relational_adjective "phalangeal" xsd:string @@ -66421,6 +66567,7 @@ xref: FMA:7480 xref: galen:RibCage xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png xref: SCTID:361741004 +xref: Wikipedia:Human_rib_cage xref: Wikipedia:Rib_cage is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton @@ -67456,9 +67603,8 @@ xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002950 ! regional part of midbrain -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0003079 ! floor plate @@ -67487,9 +67633,8 @@ xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002791 ! regional part of telencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67530,9 +67675,8 @@ xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002784 ! regional part of diencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67560,9 +67704,8 @@ xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67596,9 +67739,8 @@ xref: EHDAA2:0001097 xref: EHDAA:7590 xref: EMAPA:17551 xref: VHOG:0000786 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002678 ! regional part of medulla oblongata -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate @@ -70203,9 +70345,10 @@ xref: SCTID:361370006 xref: UMLS:C0448188 {source="ncithesaurus:Bone_of_the_Lower_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002103 ! hindlimb -relationship: develops_from UBERON:0010885 ! hindlimb bone cartilage condensation +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002103 ! hindlimb @@ -73505,9 +73648,10 @@ xref: ncithesaurus:Hand_Digit_1_Phalanx xref: SCTID:181975002 xref: UMLS:C1711344 {source="ncithesaurus:Hand_Digit_1_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! manual digit 1 -relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element relationship: part_of UBERON:0001463 ! manual digit 1 [Term] @@ -73886,9 +74030,10 @@ xref: ncithesaurus:Hand_Digit_2_Phalanx xref: SCTID:361783009 xref: UMLS:C1708312 {source="ncithesaurus:Hand_Digit_2_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! manual digit 2 -relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element relationship: part_of UBERON:0003622 ! manual digit 2 [Term] @@ -73930,9 +74075,10 @@ xref: ncithesaurus:Hand_Digit_3_Phalanx xref: SCTID:361785002 xref: UMLS:C1708314 {source="ncithesaurus:Hand_Digit_3_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! manual digit 3 -relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element relationship: part_of UBERON:0003623 ! manual digit 3 [Term] @@ -73974,9 +74120,10 @@ xref: ncithesaurus:Hand_Digit_4_Phalanx xref: SCTID:361787005 xref: UMLS:C1708316 {source="ncithesaurus:Hand_Digit_4_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! manual digit 4 -relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element relationship: part_of UBERON:0003624 ! manual digit 4 [Term] @@ -74021,9 +74168,10 @@ xref: ncithesaurus:Hand_Digit_5_Phalanx xref: SCTID:361789008 xref: UMLS:C1708317 {source="ncithesaurus:Hand_Digit_5_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! manual digit 5 -relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element relationship: part_of UBERON:0003625 ! manual digit 5 [Term] @@ -74055,9 +74203,10 @@ xref: ncithesaurus:Foot_Digit_1_Phalanx xref: SCTID:361798006 xref: UMLS:C1708080 {source="ncithesaurus:Foot_Digit_1_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! pedal digit 1 -relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] @@ -74081,9 +74230,10 @@ xref: ncithesaurus:Foot_Digit_2_Phalanx xref: SCTID:361800004 xref: UMLS:C1708082 {source="ncithesaurus:Foot_Digit_2_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! pedal digit 2 -relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element relationship: part_of UBERON:0003632 ! pedal digit 2 [Term] @@ -74107,9 +74257,10 @@ xref: ncithesaurus:Foot_Digit_3_Phalanx xref: SCTID:361802007 xref: UMLS:C1708084 {source="ncithesaurus:Foot_Digit_3_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! pedal digit 3 -relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element relationship: part_of UBERON:0003633 ! pedal digit 3 [Term] @@ -74169,9 +74320,10 @@ xref: SCTID:181973009 xref: UMLS:C1708987 {source="ncithesaurus:Metacarpal_Bone_Digit_1"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 -relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element relationship: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 property_value: external_definition "The first metacarpal bone or the metacarpal bone of the thumb is the first bone of the thumb. It is connected to the trapezium of the carpus at the first carpometacarpal joint and to the proximal thumb phalanx at the first metacarpophalangeal joint[Wikipedia:First_metacarpal_bone]." xsd:string {source="Wikipedia:First_metacarpal_bone"} property_value: ray_number "1" xsd:nonNegativeInteger @@ -74211,9 +74363,10 @@ xref: SCTID:263399007 xref: UMLS:C1708988 {source="ncithesaurus:Metacarpal_Bone_Digit_2"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 -relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element relationship: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000853", ontology="AAO", source="AAO:LAP"} property_value: ray_number "2" xsd:nonNegativeInteger @@ -74255,9 +74408,10 @@ xref: UMLS:C1708989 {source="ncithesaurus:Metacarpal_Bone_Digit_3"} xref: Wikipedia:Third_metacarpal_bone is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 -relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element relationship: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000854", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The third metacarpal bone (metacarpal bone of the middle finger) is a little smaller than the second. The dorsal aspect of its base presents on its radial side a pyramidal eminence, the styloid process, which extends upward behind the capitate; immediately distal to this is a rough surface for the attachment of the extensor carpi radialis brevis muscle. The carpal articular facet is concave behind, flat in front, and articulates with the capitate. On the radial side is a smooth, concave facet for articulation with the second metacarpal, and on the ulnar side two small oval facets for the fourth metacarpal[Wikipedia:Third_metacarpal_bone]." xsd:string {source="Wikipedia:Third_metacarpal_bone"} @@ -74298,9 +74452,10 @@ xref: SCTID:263401001 xref: UMLS:C1708990 {source="ncithesaurus:Metacarpal_Bone_Digit_4"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 -relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element relationship: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 property_value: external_definition "The fourth metacarpal bone (metacarpal bone of the ring finger) is shorter and smaller than the third. The base is small and quadrilateral; its superior surface presents two facets, a large one medially for articulation with the hamate, and a small one laterally for the capitate. On the radial side are two oval facets, for articulation with the third metacarpal; and on the ulnar side a single concave facet, for the fifth metacarpal[Wikipedia:Fourth_metacarpal_bone]." xsd:string {source="Wikipedia:Fourth_metacarpal_bone"} property_value: ray_number "4" xsd:nonNegativeInteger @@ -74341,9 +74496,10 @@ xref: SCTID:263402008 xref: UMLS:C1711224 {source="ncithesaurus:Metacarpal_Bone_Digit_5"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 -relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element relationship: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000855", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The fifth metacarpal bone (metacarpal bone of the little finger or pinky finger) is the most lateral metacarpal[Wikipedia:Fifth_metacarpal_bone]." xsd:string {source="Wikipedia:Fifth_metacarpal_bone"} @@ -74372,9 +74528,10 @@ xref: SCTID:182121005 xref: UMLS:C1708999 {source="ncithesaurus:Metatarsal_Bone_Digit_1"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 -relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000925", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The first metatarsal bone is the bone in the body of the foot just behind the big toe. It is remarkable for its great thickness, and is the shortest of the metatarsal bones. The body is strong, and of well-marked prismoid form. The base presents, as a rule, no articular facets on its sides, but occasionally on the lateral side there is an oval facet, by which it articulates with the second metatarsal. Its proximal articular surface is of large size and kidney-shaped; its circumference is grooved, for the tarsometatarsal ligaments, and medially gives insertion to part of the tendon of the Tibialis anterior; its plantar angle presents a rough oval prominence for the insertion of the tendon of the Peronus longus. The head is large; on its plantar surface are two grooved facets, on which glide sesamoid bones; the facets are separated by a smooth elevation[Wikipedia:First_metatarsal_bone]." xsd:string {source="Wikipedia:First_metatarsal_bone"} @@ -74401,9 +74558,10 @@ xref: SCTID:182128004 xref: UMLS:C1709000 {source="ncithesaurus:Metatarsal_Bone_Digit_2"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 -relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000926", ontology="AAO", source="AAO:LAP"} property_value: ray_number "2" xsd:nonNegativeInteger @@ -74431,9 +74589,10 @@ xref: UMLS:C1709001 {source="ncithesaurus:Metatarsal_Bone_Digit_3"} xref: Wikipedia:Third_metatarsal_bone is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 -relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000927", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The third metatarsal bone articulates proximally, by means of a triangular smooth surface, with the third cuneiform; medially, by two facets, with the second metatarsal; and laterally, by a single facet, with the fourth metatarsal. This last facet is situated at the dorsal angle of the base[Wikipedia:Third_metatarsal_bone]." xsd:string {source="Wikipedia:Third_metatarsal_bone"} @@ -74460,9 +74619,10 @@ xref: SCTID:182139001 xref: UMLS:C1709002 {source="ncithesaurus:Metatarsal_Bone_Digit_4"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 -relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000928", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The fourth metatarsal bone is smaller in size than the third; its base presents an oblique quadrilateral surface for articulation with the cuboid; a smooth facet on the medial side, divided by a ridge into an anterior portion for articulation with the third metatarsal, and a posterior portion for articulation with the third cuneiform; on the lateral side a single facet, for articulation with the fifth metatarsal[Wikipedia:Fourth_metatarsal_bone]." xsd:string {source="Wikipedia:Fourth_metatarsal_bone"} @@ -74489,9 +74649,10 @@ xref: SCTID:182144008 xref: UMLS:C1709003 {source="ncithesaurus:Metatarsal_Bone_Digit_5"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 -relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000929", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The fifth metatarsal bone is recognized by a rough eminence, the tuberosity, on the lateral side of its base. The base articulates behind, by a triangular surface cut obliquely in a transverse direction, with the cuboid; and medially, with the fourth metatarsal. On the medial part of its dorsal surface is inserted the tendon of the Peronus tertius and on the dorsal surface of the tuberosity that of the Peronus brevis. A strong band of the plantar aponeurosis connects the projecting part of the tuberosity with the lateral process of the tuberosity of the calcaneus. The plantar surface of the base is grooved for the tendon of the Abductor digiti quinti, and gives origin to the Flexor digiti quinti brevis. The base of the metatarsal is often injured and a particularly notorious fracture is the Jones fracture. When the tuberosity is broken, it is called a pseudo-Jones fracture or a dancer's fracture. This is a common fracture of the fifth metatarsal. Stress fractures are common in the fifth metatarsal among athletes[Wikipedia:Fifth_metatarsal_bone]." xsd:string {source="Wikipedia:Fifth_metatarsal_bone"} @@ -77028,9 +77189,10 @@ xref: ncithesaurus:Foot_Digit_4_Phalanx xref: SCTID:361804008 xref: UMLS:C1708086 {source="ncithesaurus:Foot_Digit_4_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! pedal digit 4 -relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element relationship: part_of UBERON:0003634 ! pedal digit 4 [Term] @@ -77056,9 +77218,10 @@ xref: ncithesaurus:Foot_Digit_5_Phalanx xref: SCTID:361806005 xref: UMLS:C1708088 {source="ncithesaurus:Foot_Digit_5_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! pedal digit 5 -relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element relationship: part_of UBERON:0003635 ! pedal digit 5 [Term] @@ -78437,7 +78600,6 @@ relationship: part_of UBERON:0001768 ! uvea id: UBERON:0003957 name: Bruch's membrane def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] -comment: TODO - see also subset: vertebrate_core synonym: "basal lamina of choroid" EXACT [FMA:58438] synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] @@ -78592,7 +78754,7 @@ synonym: "gonium" EXACT [MP:0008380] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0003967 @@ -87700,7 +87862,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone [Term] id: UBERON:0004547 name: decidua capsularis -def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] xref: FMA:86478 xref: MA:0002906 xref: ncithesaurus:Decidua_Capsularis @@ -87977,8 +88139,9 @@ name: rib 1 def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa I" EXACT LATIN [] synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib] -synonym: "Costa prima (I)" EXACT [FMA:7597] +synonym: "costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png @@ -87997,8 +88160,9 @@ name: rib 2 def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa II" EXACT LATIN [] synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib] -synonym: "Costa secunda (II)" EXACT [FMA:7620] +synonym: "costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray125.png @@ -88016,6 +88180,7 @@ id: UBERON:0004603 name: rib 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa III" EXACT LATIN [] synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 @@ -88030,6 +88195,7 @@ id: UBERON:0004604 name: rib 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IV" EXACT LATIN [] synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 @@ -88044,6 +88210,7 @@ id: UBERON:0004605 name: rib 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa V" EXACT LATIN [] synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 @@ -88058,6 +88225,7 @@ id: UBERON:0004606 name: rib 6 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VI" EXACT LATIN [] synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 @@ -88072,6 +88240,7 @@ id: UBERON:0004607 name: rib 7 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VII" EXACT LATIN [] synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 @@ -88086,6 +88255,7 @@ id: UBERON:0004608 name: rib 9 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IX" EXACT LATIN [] synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 @@ -88101,6 +88271,7 @@ name: rib 10 def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa X" EXACT LATIN [] synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray126.png @@ -88119,6 +88290,7 @@ name: rib 11 def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XI" EXACT LATIN [] synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Gray127.png @@ -88136,6 +88308,7 @@ name: rib 12 def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XII" EXACT LATIN [] synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png @@ -88586,10 +88759,14 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: SCTID:361515007 xref: VHOG:0000854 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010363 ! endochondral element -relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010351 ! otic capsule cartilage element relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -89729,7 +89906,7 @@ relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004703 name: dorsal thalamus -comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 +comment: TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] @@ -89748,6 +89925,7 @@ xref: TAO:0000653 xref: ZFA:0000653 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +property_value: present_in_taxon NCBITaxon:7776 {notes="http://neurolex.org/wiki/Category_talk:Thalamus", source="PMID:8167659"} [Term] id: UBERON:0004704 @@ -90576,7 +90754,7 @@ xref: Wikipedia:Articular xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone -relationship: develops_from UBERON:0011002 ! articular cartilage condensation +relationship: develops_from UBERON:0011002 ! articular cartilage element property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} property_value: external_comment "The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000467", ontology="TAO", source="Curator"} @@ -90652,8 +90830,13 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -95966,8 +96149,7 @@ relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005070 name: anterior neuropore -def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] -comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube +def: "The neuropore at the anterior (rostral) end of the neural tube." [UBERON:cjm] synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "rostral neuropore" EXACT [EMAPA:16523] @@ -95977,13 +96159,16 @@ xref: RETIRED_EHDAA2:0001768 xref: SCTID:361478000 xref: VHOG:0000768 is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_anterior_side_of UBERON:0001049 ! neural tube +relationship: in_anterior_side_of UBERON:0001049 ! neural tube property_value: external_definition "Anterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000768", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000768"} [Term] id: UBERON:0005071 name: posterior neuropore -def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] +def: "The neuropore at the posterior (caudal) end of the neural tube." [UBERON:cjm] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA2:0000676 xref: EHDAA:900 @@ -95992,6 +96177,9 @@ xref: RETIRED_EHDAA2:0000223 xref: SCTID:361479008 xref: VHOG:0000769 is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_posterior_side_of UBERON:0001049 ! neural tube +relationship: in_posterior_side_of UBERON:0001049 ! neural tube property_value: external_definition "Posterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000769", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000769"} @@ -96037,29 +96225,33 @@ relationship: adjacent_to UBERON:0002240 ! spinal cord [Term] id: UBERON:0005077 name: neuropore -def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] xref: SCTID:360408007 +is_a: UBERON:0000161 ! orifice is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore +relationship: connects UBERON:0003842 ! neural tube lumen relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005078 -name: lamina terminalis of forebrain vesicle -def: "The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development." [Wikipedia:Lamina_terminalis] -synonym: "lamina terminalis" EXACT [FMA:61975] -xref: BAMS:LT +name: lamina terminalis of neural tube +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT xref: EHDAA2:0000903 +xref: EHDAA:1983 +xref: EHDAA:2661 xref: EMAPA:16649 xref: EMAPA:16904 -xref: FMA:61975 xref: NeuroNames:208 -xref: SCTID:361483008 xref: VHOG:0001547 -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: part_of UBERON:0006222 ! future diencephalon property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001547"} @@ -99300,7 +99492,7 @@ xref: MA:0002987 xref: SCTID:368926004 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005343 @@ -99497,7 +99689,7 @@ name: malleus processus brevis def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 @@ -99513,7 +99705,7 @@ xref: SCTID:368927008 xref: Wikipedia:Neck_of_malleus is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005356 @@ -100561,8 +100753,10 @@ synonym: "auditory capsule" EXACT [ZFA:0001500] xref: EMAPA:18803 xref: TAO:0001500 xref: ZFA:0001500 -is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004637 ! otic capsule +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010351 ! otic capsule cartilage element +is_a: UBERON:0014387 ! mesenchyme derived from neural crest property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO"} property_value: external_definition "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001500", ontology="TAO", source="ZFIN:curator"} @@ -101015,7 +101209,7 @@ relationship: supplies UBERON:0002240 ! spinal cord [Term] id: UBERON:0005432 name: aortic sac -def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac] +def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] xref: EHDAA2:0004145 xref: EHDAA:9826 xref: FMA:71008 @@ -101028,6 +101222,7 @@ is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004363 ! aortic arch relationship: part_of UBERON:0004145 ! outflow tract +property_value: external_definition "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string {source="http://medical-dictionary.thefreedictionary.com/aortic+sac"} [Term] id: UBERON:0005433 @@ -104262,15 +104457,20 @@ relationship: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0005687 -name: orbitosphenoid cartilage condensation -synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329] +name: orbitosphenoid cartilage element +synonym: "sphenoid lesser wing cartilage element" RELATED [EHDAA2:0001329] xref: EHDAA2:0001329 xref: EHDAA:9554 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0005688 @@ -104709,8 +104909,7 @@ xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002240 ! spinal cord intersection_of: part_of UBERON:0003079 ! floor plate @@ -105857,7 +106056,7 @@ is_a: UBERON:0005856 ! developing mesenchymal condensation [Term] id: UBERON:0005866 name: pre-cartilage condensation -def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage] +def: "A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts." [AEO:0000150, AEO:JB] synonym: "pre-chondrogenic condensation" EXACT [] synonym: "precartilage condensation" EXACT [] synonym: "precartilagenous condensation" EXACT [] @@ -105867,6 +106066,7 @@ xref: EHDAA2:0003150 xref: EMAPA:32736 is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: part_of UBERON:0004288 ! skeleton +property_value: external_definition "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." xsd:string {source="http://dictionary.reference.com/browse/precartilage"} [Term] id: UBERON:0005867 @@ -107896,9 +108096,10 @@ xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: SCTID:361774004 xref: UMLS:C0223616 {source="ncithesaurus:Coccygeal_Vertebra"} is_a: UBERON:0001095 ! caudal vertebra +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx -relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage condensation +relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage element relationship: part_of UBERON:0001350 ! coccyx [Term] @@ -109387,13 +109588,19 @@ property_value: homology_notes "Mammals have a third type of tympanic ear. An ex [Term] id: UBERON:0006209 -name: basioccipital cartilage condensation +name: basioccipital cartilage element subset: emapa_ehdaa2 xref: EHDAA2:0000164 xref: EHDAA:7141 xref: EMAPA:18337 xref: VHOG:0001124 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009197 ! basioccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001124"} @@ -109410,9 +109617,12 @@ is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0006211 name: buccopharyngeal membrane -def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] +def: "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." [MP:0012521] subset: emapa_ehdaa2 +synonym: "oral membrane" RELATED [MP:0012521] +synonym: "oral plate" RELATED [MP:0012521] synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] +synonym: "pharyngeal membrane" RELATED INCONSISTENT [MP:0012521] xref: EHDAA2:0000189 xref: EHDAA:536 xref: EMAPA:16259 @@ -109449,14 +109659,16 @@ property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001405"} [Term] id: UBERON:0006213 -name: carpus cartilage condensation +name: carpus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a carpal bone." [OBOL:automatic] xref: EHDAA2:0000221 xref: EHDAA:8544 xref: EMAPA:18102 xref: VHOG:0001123 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0010377 ! mesenchyme from somatopleure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001435 ! carpal bone relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation @@ -109471,8 +109683,11 @@ xref: EHDAA2:0000222 xref: EHDAA:6324 xref: EMAPA:17724 xref: VHOG:0000955 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0009523 ! mesenchyme of handplate +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001435 ! carpal bone relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region @@ -109676,6 +109891,10 @@ xref: EHDAA:8355 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000963"} @@ -109747,7 +109966,13 @@ subset: emapa_ehdaa2 xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000951"} @@ -109907,14 +110132,19 @@ relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 -name: humerus cartilage condensation +name: humerus cartilage element subset: emapa_ehdaa2 xref: EHDAA2:0000787 xref: EHDAA:6240 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005258 ! upper arm mesenchyme -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006246 ! humerus pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton @@ -109930,7 +110160,12 @@ xref: EHDAA:4192 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005258 ! upper arm mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme @@ -109944,8 +110179,11 @@ xref: EHDAA2:0000809 xref: EHDAA:9568 xref: EMAPA:18029 xref: VHOG:0000964 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000964"} @@ -109960,7 +110198,10 @@ xref: EHDAA:9024 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0010042 ! 1st arch mesenchyme property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000957"} @@ -110035,13 +110276,17 @@ property_value: homology_notes " (...) an essentially similar sequence of events [Term] id: UBERON:0006254 -name: ischial cartilage condensation +name: ischial cartilage element subset: emapa_ehdaa2 xref: EHDAA2:0000890 xref: EHDAA:9570 xref: EMAPA:26930 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006255 ! ischial pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -110053,8 +110298,11 @@ xref: EHDAA2:0000891 xref: EHDAA:7153 xref: EMAPA:18348 xref: VHOG:0000962 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000962"} @@ -110162,6 +110410,10 @@ xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000958"} @@ -110554,25 +110806,28 @@ xref: EHDAA:9572 xref: EMAPA:18349 xref: EMAPA:26928 xref: VHOG:0000965 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000965"} [Term] id: UBERON:0006286 -name: radius cartilage condensation +name: radius cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a radius bone." [OBOL:automatic] xref: EHDAA2:0001585 xref: EHDAA:7267 xref: EMAPA:18054 xref: VHOG:0001318 -is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0010883 ! forelimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010846 ! radius pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001318"} @@ -110586,20 +110841,30 @@ xref: EHDAA:4178 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000949"} [Term] id: UBERON:0006288 -name: rib cartilage condensation +name: rib cartilage element subset: emapa_ehdaa2 xref: EHDAA2:0001716 xref: EHDAA:8347 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006289 ! rib pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -110614,7 +110879,12 @@ xref: EHDAA:6026 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003089 ! sclerotome relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -110622,7 +110892,7 @@ property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000681"} [Term] id: UBERON:0006290 -name: scapula cartilage condensation +name: scapula cartilage element subset: emapa_ehdaa2 xref: EHDAA2:0001777 xref: EHDAA:8368 @@ -110630,6 +110900,11 @@ xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006291 ! scapula pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo @@ -110647,6 +110922,10 @@ xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo @@ -110702,6 +110981,10 @@ xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001686 ! auditory ossicle property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000956"} @@ -110830,19 +111113,19 @@ property_value: homology_notes "Soon after it forms, the mammalian lens becomes [Term] id: UBERON:0006306 -name: ulna cartilage condensation +name: ulna cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a ulna." [OBOL:automatic] xref: EHDAA2:0002098 xref: EHDAA:7269 xref: EMAPA:18055 xref: VHOG:0001155 -is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010847 ! ulna pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001155"} @@ -114878,7 +115161,11 @@ synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0003466 ! forelimb zeugopod bone -relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element relationship: has_fused_element UBERON:0001423 ! radius bone relationship: has_fused_element UBERON:0001424 ! ulna relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -115022,8 +115309,12 @@ xref: Wikipedia:Greater_wing_of_sphenoid_bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009637 ! alisphenoid ossification center -relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation +relationship: develops_from UBERON:0010733 ! alisphenoid cartilage element relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0008895 ! splanchnocranium @@ -115045,7 +115336,7 @@ xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone relationship: surrounded_by UBERON:0002364 ! tympanic membrane [Term] @@ -115967,6 +116258,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png xref: Wikipedia:Exoccipital_condyle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -116019,7 +116311,7 @@ property_value: external_definition "Also known as loose connective tissue. A pl [Term] id: UBERON:0006820 name: body of sternum -def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MGI:anna, Wikipedia:Body_of_sternum] +def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum] @@ -116407,8 +116699,12 @@ xref: Wikipedia:Scapula xref: ZFA:0000583 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: develops_from UBERON:0006290 ! scapula cartilage condensation +relationship: develops_from UBERON:0006290 ! scapula cartilage element relationship: distally_connected_to UBERON:0007272 ! pectoral appendage skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000751", ontology="AAO"} @@ -120770,10 +121066,14 @@ is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 -name: incus cartilage condensation +name: incus cartilage element xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation [Term] @@ -123762,7 +124062,11 @@ name: tibiotarsus def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] xref: Wikipedia:Tibiotarsus is_a: UBERON:0003464 ! hindlimb bone -relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element relationship: has_fused_element UBERON:0000979 ! tibia relationship: has_fused_element UBERON:0001447 ! tarsal bone relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -123774,7 +124078,11 @@ def: "The tarsometatarsus is a bone that is found in the lower leg of certain te comment: Taxon notes: found in birds[VSAO] xref: Wikipedia:Tarsometatarsus is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element relationship: has_fused_element UBERON:0001448 ! metatarsal bone relationship: has_fused_element UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0001445 ! skeleton of pes @@ -124047,8 +124355,7 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:0008254 name: styliform cartilage def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton [Term] @@ -128271,9 +128578,10 @@ xref: SCTID:368532003 xref: UMLS:C0003793 {source="ncithesaurus:Bone_of_the_Upper_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0002428 ! limb bone intersection_of: part_of UBERON:0002102 ! forelimb -relationship: develops_from UBERON:0010883 ! forelimb bone cartilage condensation +relationship: develops_from UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002102 ! forelimb @@ -129677,6 +129985,12 @@ xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -129695,11 +130009,18 @@ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 -name: sphenoid bone cartilage condensation +name: sphenoid cartilage element +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -129713,8 +130034,9 @@ xref: VHOG:0001338 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 ! basisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001338"} [Term] @@ -129746,6 +130068,10 @@ xref: EHDAA:6033 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000959"} @@ -129866,13 +130192,14 @@ relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: pharyngeal membrane -def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: ncithesaurus:Pharyngeal_Membrane xref: UMLS:C1519040 {source="ncithesaurus:Pharyngeal_Membrane"} is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0000924 ! ectoderm relationship: has_part UBERON:0000925 ! endoderm +relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009213 @@ -131378,7 +131705,7 @@ is_a: UBERON:0010355 ! ossification center [Term] id: UBERON:0009638 name: orbitosphenoid ossification center -comment: merge with sphenoid lesser wing cartilage condensation? +comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -132566,6 +132893,7 @@ id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain @@ -132579,6 +132907,7 @@ synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 @@ -132668,9 +132997,14 @@ relationship: part_of UBERON:0004902 ! urogenital sinus epithelium id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "ZLI" EXACT [GO:0022006] +comment: Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 +synonym: "MDO" RELATED ABBREVIATION [https://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica +xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line @@ -134607,21 +134941,28 @@ is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 -name: malleus cartilage condensation +name: malleus cartilage element xref: EMAPA:18229 is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation [Term] id: UBERON:0010055 -name: stapes cartilage condensation +name: stapes cartilage element comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. xref: EMAPA:18230 -is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011607 ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle @@ -134851,7 +135192,7 @@ is_a: UBERON:0000483 ! epithelium id: UBERON:0010078 name: optic choroid vascular plexus alt_id: ZFA:0005228 -comment: Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex +comment: Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] @@ -134866,7 +135207,7 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0002200 ! vasculature of head -property_value: external_definition "A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]." xsd:string {source="XAO:0004176"} +property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]." xsd:string {source="XAO:0004176"} property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string {source="ZFA:0005094"} property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string {source="PMID:14738502"} @@ -135040,12 +135381,17 @@ relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0010129 -name: femur cartilage condensation +name: femur cartilage element comment: TODO - request EHDAA2 synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur relationship: part_of UBERON:0005254 ! upper leg mesenchyme @@ -137334,24 +137680,27 @@ id: UBERON:0010349 name: otic capsule pre-cartilage condensation synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0010351 -name: otic capsule cartilage condensation +name: otic capsule cartilage element xref: EHDAA2:0001333 xref: EHDAA:4704 xref: EMAPA:17596 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: adjacent_to UBERON:0001694 ! petrous part of temporal bone +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010349 ! otic capsule pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region @@ -138705,7 +139054,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsal b xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region @@ -138716,12 +139067,13 @@ relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0010541 -name: tarsus cartilage condensation +name: tarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: develops_from UBERON:0010540 ! tarsus pre-cartilage condensation @@ -138780,9 +139132,10 @@ xref: VSAO:0005026 xref: Wikipedia:Metacarpus xref: XAO:0003208 is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: subdivision_of UBERON:0004453 ! metacarpus region -relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage condensation +relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium relationship: proximally_connected_to UBERON:0009880 ! carpal skeleton @@ -138813,9 +139166,10 @@ xref: VSAO:0005027 xref: Wikipedia:Metatarsus xref: XAO:0003212 is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: subdivision_of UBERON:0000983 ! metatarsus region -relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage condensation +relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium relationship: proximally_connected_to UBERON:0009879 ! tarsal skeleton @@ -138857,6 +139211,7 @@ xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -138872,6 +139227,7 @@ xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -138887,6 +139243,7 @@ xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -138902,6 +139259,7 @@ xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -138917,81 +139275,87 @@ xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010557 -name: pedal digit 1 metatarsal cartilage condensation +name: pedal digit 1 metatarsal cartilage element def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010558 -name: pedal digit 2 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 2 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 2 metatarsal cartilage condensation" EXACT [] +synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010559 -name: pedal digit 3 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 3 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 3 metatarsal cartilage condensation" EXACT [] +synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010560 -name: pedal digit 4 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 4 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 4 metatarsal cartilage condensation" EXACT [] +synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010561 -name: pedal digit 5 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "hind limb digit 5 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 5 metatarsal cartilage condensation" EXACT [] +name: pedal digit 5 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -139034,6 +139398,7 @@ xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -139050,6 +139415,7 @@ xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -139066,6 +139432,7 @@ xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -139082,6 +139449,7 @@ xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -139098,91 +139466,97 @@ xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010570 -name: manual digit 1 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] -synonym: "finger 1 metacarpus cartilage condensation" EXACT [EHDAA2:0000514] -synonym: "fore limb digit 1 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 1 cartilage condensation" EXACT [] +name: manual digit 1 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010571 -name: manual digit 2 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] -synonym: "finger 2 metacarpus cartilage condensation" EXACT [EHDAA2:0000520] -synonym: "fore limb digit 2 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 2 cartilage condensation" EXACT [] +name: manual digit 2 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010572 -name: manual digit 3 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] -synonym: "finger 3 metacarpus cartilage condensation" EXACT [EHDAA2:0000526] -synonym: "fore limb digit 3 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 3 cartilage condensation" EXACT [] +name: manual digit 3 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010573 -name: manual digit 4 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +name: manual digit 4 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] -synonym: "fore limb digit 4 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 4 cartilage condensation" EXACT [] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010574 -name: manual digit 5 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +name: manual digit 5 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] -synonym: "fore limb digit 5 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 5 cartilage condensation" EXACT [] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -139197,6 +139571,7 @@ xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010564 ! manual digit 1 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -139211,6 +139586,7 @@ xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0005692 ! manual digit 2 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -139225,6 +139601,7 @@ xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0005693 ! manual digit 3 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -139239,6 +139616,7 @@ xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0005694 ! manual digit 4 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -139253,6 +139631,7 @@ xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0005695 ! manual digit 5 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -139267,6 +139646,7 @@ xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -139281,6 +139661,7 @@ xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -139295,6 +139676,7 @@ xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -139309,6 +139691,7 @@ xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -139323,6 +139706,7 @@ xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -139340,6 +139724,8 @@ xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0005255 ! pedal digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: part_of UBERON:0005255 ! pedal digit mesenchyme @@ -139358,6 +139744,8 @@ xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0005257 ! manual digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -139365,13 +139753,14 @@ property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000954"} [Term] id: UBERON:0010675 -name: manual digit 1 phalanx cartilage condensation +name: manual digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18066 is_a: UBERON:0010564 ! manual digit 1 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation @@ -139379,13 +139768,14 @@ relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010676 -name: manual digit 2 phalanx cartilage condensation +name: manual digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18071 is_a: UBERON:0005692 ! manual digit 2 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation @@ -139393,13 +139783,14 @@ relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010677 -name: manual digit 3 phalanx cartilage condensation +name: manual digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18076 is_a: UBERON:0005693 ! manual digit 3 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation @@ -139407,13 +139798,14 @@ relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010678 -name: manual digit 4 phalanx cartilage condensation +name: manual digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18081 is_a: UBERON:0005694 ! manual digit 4 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation @@ -139421,13 +139813,14 @@ relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010679 -name: manual digit 5 phalanx cartilage condensation +name: manual digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18086 is_a: UBERON:0005695 ! manual digit 5 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation @@ -139435,13 +139828,14 @@ relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010680 -name: pedal digit 1 phalanx cartilage condensation +name: pedal digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18107 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation @@ -139449,13 +139843,14 @@ relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010681 -name: pedal digit 2 phalanx cartilage condensation +name: pedal digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18112 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation @@ -139463,13 +139858,14 @@ relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010682 -name: pedal digit 3 phalanx cartilage condensation +name: pedal digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18117 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation @@ -139477,13 +139873,14 @@ relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010683 -name: pedal digit 4 phalanx cartilage condensation +name: pedal digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18122 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation @@ -139491,13 +139888,14 @@ relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010684 -name: pedal digit 5 phalanx cartilage condensation +name: pedal digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18127 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation @@ -139505,13 +139903,14 @@ relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010685 -name: pedal digit phalanx cartilage condensation +name: pedal digit phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] -synonym: "foot digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0005255 ! pedal digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation @@ -139519,13 +139918,14 @@ relationship: part_of UBERON:0005255 ! pedal digit mesenchyme [Term] id: UBERON:0010686 -name: manual digit phalanx cartilage condensation +name: manual digit phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0005257 ! manual digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation @@ -139541,6 +139941,10 @@ synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: VHOG:0000948 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005255 ! pedal digit mesenchyme property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000948"} @@ -139631,13 +140035,19 @@ relationship: proximally_connected_to UBERON:0010545 ! metatarsus skeleton [Term] id: UBERON:0010697 -name: pedal digit metatarsal cartilage condensation +name: pedal digit metatarsal cartilage element comment: Editor note: EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32951 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation [Term] @@ -139651,19 +140061,29 @@ synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000953"} [Term] id: UBERON:0010699 -name: manual digit metacarpus cartilage condensation -synonym: "finger metacarpus cartilage condensation" EXACT [] -synonym: "fore limb digit metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpal cartilage condensation" EXACT [] -synonym: "metacarpus cartilage condensation" EXACT [] +name: manual digit metacarpus cartilage element +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -139672,9 +140092,9 @@ id: UBERON:0010700 name: phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32720 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: part_of UBERON:0006717 ! autopodial skeleton @@ -139682,12 +140102,12 @@ relationship: part_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0010701 -name: phalanx cartilage condensation +name: phalanx cartilage element def: "A cartilaginous condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32721 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation @@ -139829,22 +140249,30 @@ relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0010714 -name: iliac cartilage condensation +name: iliac cartilage element xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006247 ! iliac pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 {source="VHOG:0001126"} [Term] id: UBERON:0010718 -name: pubic cartilage condensation +name: pubic cartilage element xref: EHDAA2:0001573 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006285 ! pubic pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -139904,6 +140332,11 @@ xref: SCTID:182102002 xref: UMLS:C1511560 {source="ncithesaurus:Cuneiform_Bone_of_the_Foot"} xref: Wikipedia:Cuneiform_%28anatomy%29 is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage relationship: distally_connected_to UBERON:0001448 ! metatarsal bone relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000914", ontology="AAO", source="AAO:LAP"} @@ -139973,8 +140406,13 @@ relationship: part_of UBERON:0003685 ! cranial suture id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation xref: EHDAA2:0003449 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -139986,21 +140424,33 @@ xref: EHDAA2:0003448 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010733 -name: alisphenoid cartilage condensation +name: alisphenoid cartilage element synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010732 ! alisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0010737 @@ -140013,7 +140463,13 @@ synonym: "tarsal 4" EXACT [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000932", ontology="AAO", source="AAO:LAP"} @@ -140028,7 +140484,13 @@ synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000933", ontology="AAO", source="AAO:Francis_1934"} @@ -140046,6 +140508,12 @@ synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000851", ontology="AAO", source="AAO:LAP"} [Term] @@ -140113,18 +140581,25 @@ synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:00017 xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0010745 -name: sacral vertebra cartilage condensation +name: sacral vertebra cartilage element synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0005179 ! pelvic region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010744 ! sacral vertebra pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column @@ -140229,9 +140704,15 @@ relationship: part_of UBERON:0004339 ! vault of skull [Term] id: UBERON:0010752 -name: exoccipital cartilage condensation +name: exoccipital cartilage element xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium @@ -140306,6 +140787,7 @@ id: UBERON:0010757 name: rib 8 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VIII" EXACT LATIN [] synonym: "eighth rib" EXACT [FMA:8120] xref: FMA:8120 xref: MA:0001408 @@ -140357,25 +140839,35 @@ id: UBERON:0010801 name: calcaneum pre-cartilage condensation synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010842 -name: calcaneum cartilage condensation -synonym: "calcaneous cartilage condensation" EXACT [] +name: calcaneum cartilage element +synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010843 -name: clavicle cartilage condensation +name: clavicle cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a clavicle." [OBOL:automatic] comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] xref: EMAPA:18342 @@ -140405,7 +140897,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a radius b comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation @@ -140420,7 +140914,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a ulna." [ xref: EHDAA2:0002100 xref: EHDAA:6226 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation @@ -140430,28 +140926,32 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010848 -name: radius-ulna cartilage condensation +name: radius-ulna cartilage element comment: AO notes: note that this is not represented as a single unit in EHDAA2 synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010849 -name: tibia cartilage condensation +name: tibia cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EMAPA:18155 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton @@ -140461,7 +140961,9 @@ name: tibia pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: has_potential_to_develop_into UBERON:0000979 ! tibia @@ -140470,17 +140972,17 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0010851 -name: fibula cartilage condensation +name: fibula cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] xref: EMAPA:18154 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -140493,7 +140995,9 @@ synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA2:0000509 xref: EHDAA:6196 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: has_potential_to_develop_into UBERON:0001446 ! fibula @@ -140688,9 +141192,11 @@ property_value: present_in_taxon NCBITaxon:9590 {notes="gular sac", source="http [Term] id: UBERON:0010881 -name: limb bone cartilage condensation +name: limb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation @@ -140702,6 +141208,8 @@ id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: has_potential_to_develop_into UBERON:0002428 ! limb bone @@ -140709,18 +141217,17 @@ relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0010883 -name: forelimb bone cartilage condensation +name: forelimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a forelimb bone." [OBOL:automatic] subset: grouping_class -synonym: "wing bone cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] -is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002102 ! forelimb relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010884 @@ -140729,37 +141236,36 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a forelimb subset: grouping_class synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010885 -name: hindlimb bone cartilage condensation +name: hindlimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] -is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010886 name: hindlimb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010887 @@ -140933,20 +141439,24 @@ relationship: has_part UBERON:0000992 ! female gonad [Term] id: UBERON:0010900 -name: tarsometatarsus cartilage condensation +name: tarsometatarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus @@ -140954,20 +141464,23 @@ relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010902 -name: tibiotarsus cartilage condensation +name: tibiotarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus @@ -141773,7 +142286,7 @@ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0011002 -name: articular cartilage condensation +name: articular cartilage element synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 @@ -142217,7 +142730,7 @@ relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0011094 -name: vertebra cartilage condensation +name: vertebra cartilage element def: "A cartilaginous condensation that is part of a vertebral column." [OBOL:automatic] comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] @@ -142225,6 +142738,7 @@ xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010913 ! vertebral element +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation @@ -142239,8 +142753,8 @@ def: "A pre-cartilage condensation that is part of a vertebral column." [OBOL:au synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0003089 ! sclerotome @@ -142986,18 +143500,19 @@ relationship: connects UBERON:0006428 ! basisphenoid bone [Term] id: UBERON:0011162 -name: supraoccipital cartilage condensation +name: supraoccipital cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium [Term] @@ -143007,8 +143522,8 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a supraocc synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA2:0001963 xref: EHDAA:9534 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: develops_from UBERON:0009617 ! head paraxial mesoderm @@ -143992,10 +144507,11 @@ id: UBERON:0011250 name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone -intersection_of: UBERON:0001474 ! bone element -intersection_of: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0006717 ! autopodial skeleton +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015064 ! autopod cartilage property_value: implements_design_pattern http://purl.obolibrary.org/obo/uberon/references/reference_0000015 xsd:anyURI [Term] @@ -145848,7 +146364,7 @@ is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme -relationship: part_of UBERON:0001688 ! incus +relationship: part_of UBERON:0001688 ! incus bone [Term] id: UBERON:0011601 @@ -145934,6 +146450,9 @@ xref: Wikipedia:Hyomandibula xref: ZFA:0000672 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011607 ! hyomandibular cartilage property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} @@ -145958,6 +146477,9 @@ xref: VHOG:0000688 xref: ZFA:0001422 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001422", ontology="TAO", source="ZFIN:curator"} property_value: homologous_in NCBITaxon:7742 {source="VHOG:0000688"} property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000688", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948)", source="http://bgee.unil.ch/"} @@ -145967,12 +146489,13 @@ id: UBERON:0011608 name: hyomandibular element def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010522 ! replacement element +is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000672", ontology="TAO"} @@ -146711,6 +147234,8 @@ is_a: UBERON:0014395 ! proximal mesopodial bone intersection_of: UBERON:0001447 ! tarsal bone intersection_of: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton relationship: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0011683 @@ -147525,6 +148050,8 @@ relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0011820 name: atrioventricular region +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [GO:0003294] xref: EHDAA2:0004149 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -149386,11 +149913,13 @@ is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012080 -name: patella cartilage condensation +name: patella cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a patella." [OBOL:automatic] comment: Note some sources have this as intramembranous xref: EMAPA:19140 -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella relationship: adjacent_to UBERON:0001485 ! knee joint @@ -149405,6 +149934,7 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a patella. xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -149824,8 +150354,11 @@ synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED PLURAL [] synonym: "os centrale" EXACT [FMA:77232] xref: FMA:77232 -is_a: UBERON:0003656 ! mesopodium bone -relationship: part_of UBERON:0009878 ! mesopodial skeleton +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0015067 ! centrale endochondral element +relationship: composed_primarily_of UBERON:0015067 ! centrale endochondral element +relationship: develops_from UBERON:0015077 ! centrale cartilage [Term] id: UBERON:0012132 @@ -152097,6 +152630,7 @@ id: UBERON:0012429 name: hemopoietic tissue def: "Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue" [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] comment: Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] @@ -155273,9 +155807,9 @@ relationship: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 -name: caudal vertebra cartilage condensation +name: caudal vertebra cartilage element is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation @@ -155285,6 +155819,7 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation +is_a: UBERON:0005174 ! dorsal region organ is_a: UBERON:0011095 ! vertebra pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra @@ -155293,11 +155828,11 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013505 -name: cervical vertebra cartilage condensation +name: cervical vertebra cartilage element synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation @@ -155308,6 +155843,7 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra @@ -155315,10 +155851,11 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0013507 -name: thoracic vertebra cartilage condensation +name: thoracic vertebra cartilage element synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation @@ -155328,7 +155865,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra @@ -155336,12 +155874,11 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013509 -name: lumbar vertebra cartilage condensation +name: lumbar vertebra cartilage element synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 -is_a: UBERON:0005173 ! abdominal segment organ -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation @@ -155352,6 +155889,7 @@ relationship: part_of UBERON:0006074 ! lumbar region of vertebral column id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra @@ -155420,10 +155958,11 @@ is_a: UBERON:0013515 ! subdivision of uterine tube [Term] id: UBERON:0013517 -name: coccygeal vertebra cartilage condensation +name: coccygeal vertebra cartilage element synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] xref: EHDAA2:0000260 -is_a: UBERON:0013503 ! caudal vertebra cartilage condensation +is_a: UBERON:0013503 ! caudal vertebra cartilage element +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra relationship: develops_from UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation @@ -155433,6 +155972,7 @@ relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra id: UBERON:0013518 name: coccygeal vertebra pre-cartilage condensation is_a: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra @@ -156880,7 +157420,7 @@ property_value: external_definition "Anatomical region comprising the peripheral [Term] id: UBERON:0013683 name: left dorsal thalamus -synonym: "left thalamus" EXACT [FMA:258716] +synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus intersection_of: UBERON:0004703 ! dorsal thalamus @@ -156890,7 +157430,7 @@ relationship: in_left_side_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0013684 name: right dorsal thalamus -synonym: "right thalamus" EXACT [FMA:258714] +synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus intersection_of: UBERON:0004703 ! dorsal thalamus @@ -158342,7 +158882,7 @@ xref: FMA:52770 xref: SCTID:368921009 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0014398 @@ -161341,6 +161881,7 @@ property_value: present_in_taxon NCBITaxon:8782 id: UBERON:0014734 name: allocortex def: "The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -161372,9 +161913,12 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014736 name: periallocortex -synonym: "periallocortex" RELATED [NeuroNames:2315] +def: "agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] xref: NeuroNames:2315 -is_a: UBERON:0014734 ! allocortex +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: adjacent_to UBERON:0014734 ! allocortex +relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 @@ -162746,6 +163290,1269 @@ name: layer of developing cerebral cortex is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 ! cerebral cortex +[Term] +id: UBERON:0014951 +name: proisocortex +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: NeuroNames:2311 +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +def: "A radius bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius element" EXACT [UBERON:endochondral] +synonym: "radius skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius-ulna element" EXACT [UBERON:endochondral] +synonym: "radius-ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +def: "A ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ulna element" EXACT [UBERON:endochondral] +synonym: "ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +def: "A tibia bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibia element" EXACT [UBERON:endochondral] +synonym: "tibia skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015005 +name: vertebra endochondral element +def: "A vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "vertebra element" EXACT [UBERON:endochondral] +synonym: "vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002412 ! vertebra +union_of: UBERON:0011094 ! vertebra cartilage element +union_of: UBERON:0011095 ! vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015006 +name: coccygeal vertebra endochondral element +def: "A coccygeal vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "coccygeal vertebra element" EXACT [UBERON:endochondral] +synonym: "coccygeal vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006070 ! coccygeal vertebra +union_of: UBERON:0013517 ! coccygeal vertebra cartilage element +union_of: UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +def: "A cervical vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "cervical vertebra element" EXACT [UBERON:endochondral] +synonym: "cervical vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation +relationship: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +def: "A thoracic vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "thoracic vertebra element" EXACT [UBERON:endochondral] +synonym: "thoracic vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "lumbar vertebra element" EXACT [UBERON:endochondral] +synonym: "lumbar vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005173 ! abdominal segment organ +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +def: "A sacral vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sacral vertebra element" EXACT [UBERON:endochondral] +synonym: "sacral vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibiotarsus element" EXACT [UBERON:endochondral] +synonym: "tibiotarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsometatarsus element" EXACT [UBERON:endochondral] +synonym: "tarsometatarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation +relationship: part_of UBERON:0001445 ! skeleton of pes + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +def: "A fibula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "fibula element" EXACT [UBERON:endochondral] +synonym: "fibula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "calcaneum element" EXACT [UBERON:endochondral] +synonym: "calcaneum skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "supraoccipital element" EXACT [UBERON:endochondral] +synonym: "supraoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +def: "A stapes bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "stapes element" EXACT [UBERON:endochondral] +synonym: "stapes skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015017 +name: incus endochondral element +def: "A incus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "incus element" EXACT [UBERON:endochondral] +synonym: "incus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +def: "A malleus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "malleus" RELATED [UBERON:endochondral] +synonym: "malleus element" EXACT [UBERON:endochondral] +synonym: "malleus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015019 +name: rib endochondral element +def: "A rib bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "rib element" EXACT [UBERON:endochondral] +synonym: "rib skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation +relationship: part_of UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0015020 +name: otic capsule endochondral element +def: "A otic capsule bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "otic capsule element" EXACT [UBERON:endochondral] +synonym: "otic capsule skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004637 ! otic capsule +union_of: UBERON:0010349 ! otic capsule pre-cartilage condensation +union_of: UBERON:0010351 ! otic capsule cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "forelimb skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "hindlimb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "phalanx element" EXACT [UBERON:endochondral] +synonym: "phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element +relationship: part_of UBERON:0010543 ! acropodial skeleton + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element +relationship: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element +relationship: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element +relationship: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element +relationship: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +relationship: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +relationship: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +relationship: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +relationship: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "basioccipital element" EXACT [UBERON:endochondral] +synonym: "basioccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +def: "A carpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "carpus element" EXACT [UBERON:endochondral] +synonym: "carpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation +relationship: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsus element" EXACT [UBERON:endochondral] +synonym: "tarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element +relationship: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "exoccipital element" EXACT [UBERON:endochondral] +synonym: "exoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015052 +name: femur endochondral element +def: "A femur bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "femur element" EXACT [UBERON:endochondral] +synonym: "femur skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +def: "A humerus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "humerus element" EXACT [UBERON:endochondral] +synonym: "humerus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +def: "A iliac bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "iliac element" EXACT [UBERON:endochondral] +synonym: "iliac skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +def: "A pubic bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pubic element" EXACT [UBERON:endochondral] +synonym: "pubic skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +def: "A ischial bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ischial element" EXACT [UBERON:endochondral] +synonym: "ischial skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +def: "A scapula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "scapula element" EXACT [UBERON:endochondral] +synonym: "scapula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "alisphenoid element" EXACT [UBERON:endochondral] +synonym: "alisphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "orbitosphenoid element" EXACT [UBERON:endochondral] +synonym: "orbitosphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sphenoid bone skeletal element" BROAD [UBERON:endochondral] +synonym: "sphenoid element" EXACT [UBERON:endochondral] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0015061 +name: limb endochondral element +def: "A limb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "limb bone endochondral element" EXACT [UBERON:endochondral] +synonym: "limb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation +relationship: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0004381 ! skeleton of limb + +[Term] +id: UBERON:0015062 +name: bone condensation +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0006717 ! autopodial skeleton +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015064 +name: autopod cartilage +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +comment: Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015068 ! distal carpal endochondral element +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015077 +name: centrale cartilage +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton +relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015081 +name: proximal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015099 +name: distal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +def: "The remnant of the lamina terminalis in the developed brain." [UBERON:cjm] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: SCTID:361483008 +xref: VHOG:0001547 +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0014532 ! lamina of cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter +relationship: transformation_of UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: UBERON:1000000 name: chin ventral margin @@ -163034,7 +164841,7 @@ namespace: none def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -164563,6 +166370,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -164623,6 +166431,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -174229,6 +176038,7 @@ comment: The supraoccipital crest may be small and restricted to the dorsal part synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -177096,6 +178906,7 @@ name: spina occipitalis namespace: uberon/phenoscape-anatomy def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -186328,8 +188139,7 @@ id: UBERON:3000921 name: element Y of hind mesopodium namespace: uberon/phenoscape-anatomy def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -186947,8 +188757,8 @@ id: UBERON:3010045 name: centrale 1 namespace: uberon/phenoscape-anatomy def: "Distal-most centrale when two are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -186984,8 +188794,8 @@ id: UBERON:3010060 name: centrale (fore) namespace: uberon/phenoscape-anatomy def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] -is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -187071,8 +188881,8 @@ id: UBERON:3010073 name: centrale 2 namespace: uberon/phenoscape-anatomy def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -187807,8 +189617,9 @@ name: postminimus namespace: uberon/phenoscape-anatomy def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -192879,8 +194690,7 @@ id: UBERON:4200140 name: prepollical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] @@ -192888,8 +194698,7 @@ id: UBERON:4200141 name: prehallical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:3000922 ! prehallux skeleton created_by: DB @@ -194169,6 +195978,11 @@ xref: BSPO:0000125 is_a: part_of ! part_of inverse_of: in_proximal_side_of ! in_proximal_side_of +[Typedef] +id: in_dorsal_side_of +name: in_dorsal_side_of +is_a: part_of ! part_of + [Typedef] id: in_lateral_side_of name: in_lateral_side_of @@ -194227,6 +196041,11 @@ holds_over_chain: overlaps in_taxon holds_over_chain: part_of in_taxon holds_over_chain: supplies in_taxon +[Typedef] +id: in_ventral_side_of +name: in_ventral_side_of +is_a: part_of ! part_of + [Typedef] id: innervated_by name: innervated_by diff --git a/uberon-with-isa.obo b/uberon-with-isa.obo index 272eb8307a..f794478d57 100644 --- a/uberon-with-isa.obo +++ b/uberon-with-isa.obo @@ -103,7 +103,7 @@ namespace: none def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -1893,8 +1893,7 @@ id: UBERON:4200140 name: prepollical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] @@ -1902,8 +1901,7 @@ id: UBERON:4200141 name: prehallical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:3000922 ! prehallux skeleton [Term] @@ -6692,11 +6690,11 @@ relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 -name: tibial cartilage +name: tibial cartilage tissue namespace: uberon def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] -comment: TODO -synonym: "cartilage of tibia" EXACT [FMA:33923] +comment: This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia +synonym: "cartilage of tibia" RELATED [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue @@ -8911,7 +8909,7 @@ relationship: part_of UBERON:0001870 ! frontal cortex id: UBERON:0000453 name: decidua basalis namespace: uberon -def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [MGI:anna, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599] +def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [MP:0012529, https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity subset: efo_slim ! EFO slim synonym: "basal decidua" RELATED [MGI:anna] @@ -9975,7 +9973,7 @@ relationship: part_of UBERON:0001073 ! ileocecal junction id: UBERON:0000642 name: suspensory ligament of duodenum namespace: uberon -def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] @@ -10536,6 +10534,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string +property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string property_value: has_relational_adjective "stomodeal" xsd:string [Term] @@ -11751,10 +11750,14 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extrem xref: ncithesaurus:Humerus is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone -relationship: develops_from UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006245 ! humerus cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string property_value: has_relational_adjective "humeral" xsd:string @@ -11856,9 +11859,13 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px xref: ncithesaurus:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string [Term] @@ -11918,10 +11925,14 @@ xref: ncithesaurus:Femur is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010129 ! femur cartilage element relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that form the thighs, extending from the pelvic girdles to the knees.[AAO]" xsd:string @@ -14919,7 +14930,7 @@ name: obsolete articular cartilage namespace: uberon is_obsolete: true consider: UBERON:0010996 ! articular cartilage of joint -consider: UBERON:0011002 ! articular cartilage condensation +consider: UBERON:0011002 ! articular cartilage element comment: obsoleted as it conflated two distinct classes [Term] @@ -15151,8 +15162,8 @@ xref: ncithesaurus:Sacral_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -is_a: UBERON:0005179 ! pelvic region organ -relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: part_of UBERON:0006075 ! sacral region of vertebral column intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column @@ -15442,7 +15453,7 @@ is_a: UBERON:0002495 ! long bone is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010905 ! clavicle bone primordium -relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage condensation +relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage element relationship: in_lateral_side_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -20135,10 +20146,14 @@ xref: ncithesaurus:Ilium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010714 ! iliac cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: dubious_for_taxon NCBITaxon:8570 property_value: external_definition "Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO]" xsd:string property_value: has_relational_adjective "iliac" xsd:string @@ -20168,10 +20183,14 @@ xref: ncithesaurus:Ischium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string property_value: has_relational_adjective "ischial" xsd:string @@ -20198,10 +20217,14 @@ xref: ncithesaurus:Pubic_Bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string [Term] @@ -23859,9 +23882,13 @@ xref: galen:Radius xref: ncithesaurus:Radius_Bone is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006286 ! radius cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string [Term] @@ -23889,9 +23916,13 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extrem xref: ncithesaurus:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006306 ! ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string property_value: has_relational_adjective "ulnar" xsd:string @@ -24035,6 +24066,12 @@ xref: Wikipedia:Trapezium_(bone) xref: galen:Trapezium xref: ncithesaurus:Trapezial_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0001431 @@ -24065,6 +24102,12 @@ xref: Wikipedia:Trapezoid_bone xref: galen:Trapezoid xref: ncithesaurus:Trapezoid_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string @@ -24097,6 +24140,12 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Capitate_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -24128,6 +24177,12 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png xref: ncithesaurus:Hamate_Bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -24190,7 +24245,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px- xref: ncithesaurus:Carpal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone -relationship: develops_from UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element +relationship: develops_from UBERON:0006213 ! carpus cartilage element relationship: part_of UBERON:0004452 ! carpal region relationship: part_of UBERON:0009880 ! carpal skeleton intersection_of: UBERON:0001474 ! bone element @@ -24228,7 +24284,8 @@ xref: ncithesaurus:Hand_Phalanx is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone -relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium intersection_of: UBERON:0003221 ! phalanx @@ -24522,9 +24579,13 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extrem xref: ncithesaurus:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string property_value: has_relational_adjective "fibular" xsd:string @@ -24556,7 +24617,8 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200p xref: ncithesaurus:Tarsal_Bone is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: develops_from UBERON:0010541 ! tarsus cartilage element relationship: part_of UBERON:0004454 ! tarsal region relationship: part_of UBERON:0009879 ! tarsal skeleton intersection_of: UBERON:0001474 ! bone element @@ -24585,6 +24647,7 @@ xref: ncithesaurus:Metatarsal_Bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element relationship: connected_to UBERON:0001447 ! tarsal bone relationship: connected_to UBERON:0001449 ! phalanx of pes relationship: part_of UBERON:0000983 ! metatarsus region @@ -24623,7 +24686,8 @@ xref: ncithesaurus:Phalanx_of_the_Foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone -relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0002387 ! pes relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium @@ -24660,8 +24724,12 @@ xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG xref: ncithesaurus:Calcaneum is_a: UBERON:0011679 ! proximal tarsal bone -relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: has_relational_adjective "calcaneal" xsd:string [Term] @@ -24732,8 +24800,14 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png xref: ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string [Term] @@ -24769,8 +24843,14 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string [Term] @@ -24807,8 +24887,14 @@ xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png xref: ncithesaurus:External_Cuneiform_Bone_of_the_Foot is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string @@ -25567,9 +25653,12 @@ xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone -relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton -intersection_of: UBERON:0001435 ! carpal bone -intersection_of: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0001481 @@ -25582,8 +25671,13 @@ xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015069 ! distal carpal cartilage relationship: distally_connected_to UBERON:0002374 ! metacarpal bone relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string [Term] @@ -28532,7 +28626,7 @@ xref: ncithesaurus:Stapedius_Muscle is_a: UBERON:0001577 ! facial nerve muscle is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation -relationship: has_muscle_insertion UBERON:0001687 ! stapes +relationship: has_muscle_insertion UBERON:0001687 ! stapes bone relationship: innervated_by UBERON:0001647 ! facial nerve relationship: part_of UBERON:0001756 ! middle ear property_value: homologous_in NCBITaxon:7742 @@ -30734,8 +30828,12 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008193 ! pneumatized bone -relationship: develops_from UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0015060 ! sphenoid endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0009193 ! sphenoid cartilage element relationship: part_of UBERON:0011156 ! facial skeleton +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0001678 @@ -31069,10 +31167,10 @@ property_value: homology_notes "Additional structural analysis within a phylogen [Term] id: UBERON:0001687 -name: stapes +name: stapes bone namespace: uberon def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [Wikipedia:Stapes, doi:10.1111/j.1469-7580.2005.00441.x] -comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): \"This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.\" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] +comment: Taxon notes (via VHOG): \"This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.\" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] @@ -31103,19 +31201,24 @@ xref: ncithesaurus:Stapes is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004368 ! Reichert's cartilage -relationship: develops_from UBERON:0010055 ! stapes cartilage condensation +relationship: develops_from UBERON:0010055 ! stapes cartilage element relationship: evolved_from UBERON:0011606 ! hyomandibular bone relationship: homologous_to UBERON:3000580 ! stylus of pars media plectri +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string [Term] id: UBERON:0001688 -name: incus +name: incus bone namespace: uberon def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms +synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 @@ -31132,18 +31235,24 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px xref: ncithesaurus:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone -relationship: develops_from UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0015017 ! incus endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0007374 ! incus cartilage element relationship: evolved_from UBERON:0006597 ! quadrate bone +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string [Term] id: UBERON:0001689 -name: malleus +name: malleus bone namespace: uberon def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus] +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] +synonym: "malleus" BROAD [MA:0001216] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 @@ -31158,9 +31267,13 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px xref: ncithesaurus:Malleus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0003107 ! Meckel's cartilage -relationship: develops_from UBERON:0010054 ! malleus cartilage condensation +relationship: develops_from UBERON:0010054 ! malleus cartilage element relationship: evolved_from UBERON:0004744 ! articular/anguloarticular +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string @@ -31281,11 +31394,16 @@ xref: ZFA:0000472 xref: http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps parasphenoid-basioccipital joint (TAO:0001832)[TAO]" xsd:string @@ -31322,12 +31440,17 @@ xref: ZFA:0000661 xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009635 ! parachordal cartilage -relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from occipital arch cartilage (TAO:0001504)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string @@ -37561,7 +37684,6 @@ id: UBERON:0001897 name: dorsal plus ventral thalamus namespace: uberon def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] -comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -37720,11 +37842,11 @@ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obs subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "SbTh" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource, NIF_GrossAnatomy:birnlex_708] synonym: "perithalamus" RELATED [Wikipedia:Thalamus] -synonym: "prethalamus" EXACT DEVELOPMENTAL [] -synonym: "subthalamic region" EXACT [] -synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708] +synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] +synonym: "subthalamic region" EXACT [FMA:62010, NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [NIF_GrossAnatomy:birnlex_708] -synonym: "ventral thalamus" EXACT [MA:0000181] +synonym: "ventral thalamus" EXACT [GO:0021539, MA:0000181] xref: BAMS:SbTh xref: BAMS:VNT xref: BAMS:VT @@ -37747,7 +37869,6 @@ xref: ZFA:0000458 xref: ncithesaurus:Ventral_Thalamus is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus -property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string property_value: has_relational_adjective "subthalamic" xsd:string [Term] @@ -39378,7 +39499,7 @@ synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] -synonym: "isocortex" EXACT [] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] @@ -46933,7 +47054,7 @@ property_value: homology_notes "There are more than 50,000 extant vertebrate spe id: UBERON:0002205 name: manubrium of sternum namespace: uberon -def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms synonym: "manubrium" BROAD [] @@ -47522,9 +47643,13 @@ xref: ncithesaurus:Rib is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: develops_from UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006288 ! rib cartilage element relationship: in_lateral_side_of UBERON:0014478 ! rib skeletal system relationship: part_of UBERON:0014478 ! rib skeletal system +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO]" xsd:string property_value: external_definition "Endochondral, rodlike element that articulates with the transverse process and parapophysis (double-headed rib), or with the transverse process only (single-headed rib); it extends into the body wall and provides a site for muscle attachment.[AAO]" xsd:string @@ -48645,7 +48770,7 @@ subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obs subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] -synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery] +synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] xref: EHDAA2:0004072 xref: EMAPA:19242 @@ -50677,7 +50802,8 @@ xref: ncithesaurus:Thoracic_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone -relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0006073 ! thoracic region of vertebral column intersection_of: UBERON:0002412 ! vertebra @@ -51608,6 +51734,7 @@ xref: ncithesaurus:Metacarpal_Bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element relationship: connected_to UBERON:0001435 ! carpal bone relationship: connected_to UBERON:0001436 ! phalanx of manus relationship: part_of UBERON:0004453 ! metacarpus region @@ -52105,8 +52232,7 @@ property_value: external_definition "One of the fingers of the manus.[AAO]" xsd: id: UBERON:0002390 name: hematopoietic system namespace: uberon -def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, OMD:haematological, Wikipedia:Hematopoietic_system, http://www.thefreedictionary.com/hematopoietic+system] -comment: This class was created automatically from a combination of ontologies +def: "Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes." [Wikipedia:Haematopoiesis] subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -52133,7 +52259,7 @@ xref: SCTID:362587009 xref: TAO:0005023 xref: UMLS:C0018957 xref: VHOG:0001624 -xref: Wikipedia:Hematopoietic_system +xref: Wikipedia:Haematopoiesis xref: XAO:0000122 xref: ZFA:0005023 xref: ncithesaurus:Hematopoietic_System @@ -52853,8 +52979,12 @@ xref: ncithesaurus:Vertebra is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: develops_from UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011094 ! vertebra cartilage element relationship: part_of UBERON:0001130 ! vertebral column +intersection_of: UBERON:0015005 ! vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string property_value: external_definition "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string @@ -52884,7 +53014,8 @@ xref: ncithesaurus:Cervical_Vertebra is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0004451 ! trunk or cervical vertebra -relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element relationship: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0006072 ! cervical region of vertebral column intersection_of: UBERON:0002412 ! vertebra @@ -52913,7 +53044,8 @@ xref: ncithesaurus:Lumbar_Vertebra is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column @@ -53329,7 +53461,8 @@ xref: UMLS:C0582791 xref: ncithesaurus:Bone_of_the_Extremity is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin -relationship: develops_from UBERON:0010881 ! limb bone cartilage condensation +is_a: UBERON:0015061 ! limb endochondral element +relationship: develops_from UBERON:0010881 ! limb cartilage element relationship: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0004381 ! skeleton of limb intersection_of: UBERON:0001474 ! bone element @@ -54706,6 +54839,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbito-sphC)nocC/de@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [UBERON:cjm] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -54719,12 +54853,16 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0003111 ! sphenoid region +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from taenia marginalis anterior (TAO:0001505)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps orbitosphenoid-lateral ethmoid joint (TAO:0001941)[TAO]" xsd:string @@ -55157,7 +55295,7 @@ xref: SCTID:279685009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001687 ! stapes +relationship: part_of UBERON:0001687 ! stapes bone [Term] id: UBERON:0002497 @@ -59533,12 +59671,12 @@ id: UBERON:0002689 name: supraoptic crest namespace: uberon def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [Wikipedia:Organum_vasculosum_of_the_lamina_terminalis, https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376] -comment: AO notes: NIF has two classes here +comment: AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis synonym: "OVLT" EXACT ABBREVIATION [] synonym: "SoC" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource, NIF_GrossAnatomy:birnlex_1400] synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] -synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] @@ -67548,7 +67686,7 @@ property_value: external_definition "There are two primary regions that are thou id: UBERON:0003054 name: roof plate namespace: uberon -def: "a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +def: "a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO @@ -67558,8 +67696,10 @@ xref: AAO:0011097 xref: NeuroNames:1371 xref: TAO:0007058 xref: ZFA:0007058 -is_a: UBERON:0005423 ! developing anatomical structure -relationship: part_of UBERON:0000922 ! embryo +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: in_dorsal_side_of UBERON:0001049 ! neural tube relationship: part_of UBERON:0001049 ! neural tube property_value: external_definition "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string @@ -68263,7 +68403,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic id: UBERON:0003079 name: floor plate namespace: uberon -def: "A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: efo_slim ! EFO slim subset: uberon_slim ! Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms @@ -68282,11 +68422,15 @@ xref: Wikipedia:Floor_plate xref: ZFA:0000022 xref: http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png -is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002328 ! notochord relationship: develops_from UBERON:0007286 ! presumptive floor plate -relationship: part_of UBERON:0000922 ! embryo -relationship: part_of UBERON:0001016 ! nervous system +relationship: in_ventral_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube +property_value: dc-description " A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." xsd:string property_value: external_definition "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string [Term] @@ -70697,7 +70841,8 @@ xref: galen:Phalanx xref: ncithesaurus:Phalanx is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone -relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: develops_from UBERON:0010701 ! phalanx cartilage element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0010543 ! acropodial skeleton intersection_of: UBERON:0002495 ! long bone @@ -71314,6 +71459,7 @@ synonym: "rib cage" EXACT [FMA:7480] synonym: "thoracic cage" EXACT [FMA:7480] xref: FMA:7480 xref: SCTID:361741004 +xref: Wikipedia:Human_rib_cage xref: Wikipedia:Rib_cage xref: galen:RibCage xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png @@ -72396,9 +72542,8 @@ xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002950 ! regional part of midbrain -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -72428,9 +72573,8 @@ xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002791 ! regional part of telencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -72472,9 +72616,8 @@ xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002784 ! regional part of diencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -72503,9 +72646,8 @@ xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001895 ! metencephalon relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -72540,9 +72682,8 @@ xref: EHDAA2:0001097 xref: EHDAA:7590 xref: EMAPA:17551 xref: VHOG:0000786 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002678 ! regional part of medulla oblongata -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0001896 ! medulla oblongata relationship: part_of UBERON:0003079 ! floor plate intersection_of: UBERON:0000481 ! multi-tissue structure @@ -75279,7 +75420,8 @@ xref: UMLS:C0448188 xref: ncithesaurus:Bone_of_the_Lower_Extremity is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex -relationship: develops_from UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002103 ! hindlimb intersection_of: UBERON:0001474 ! bone element @@ -78725,7 +78867,8 @@ xref: SCTID:181975002 xref: UMLS:C1711344 xref: ncithesaurus:Hand_Digit_1_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element relationship: part_of UBERON:0001463 ! manual digit 1 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! manual digit 1 @@ -79106,7 +79249,8 @@ xref: SCTID:361783009 xref: UMLS:C1708312 xref: ncithesaurus:Hand_Digit_2_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element relationship: part_of UBERON:0003622 ! manual digit 2 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! manual digit 2 @@ -79150,7 +79294,8 @@ xref: SCTID:361785002 xref: UMLS:C1708314 xref: ncithesaurus:Hand_Digit_3_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element relationship: part_of UBERON:0003623 ! manual digit 3 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! manual digit 3 @@ -79194,7 +79339,8 @@ xref: SCTID:361787005 xref: UMLS:C1708316 xref: ncithesaurus:Hand_Digit_4_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element relationship: part_of UBERON:0003624 ! manual digit 4 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! manual digit 4 @@ -79241,7 +79387,8 @@ xref: SCTID:361789008 xref: UMLS:C1708317 xref: ncithesaurus:Hand_Digit_5_Phalanx is_a: UBERON:0001436 ! phalanx of manus -relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element relationship: part_of UBERON:0003625 ! manual digit 5 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! manual digit 5 @@ -79275,7 +79422,8 @@ xref: SCTID:361798006 xref: UMLS:C1708080 xref: ncithesaurus:Foot_Digit_1_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element relationship: part_of UBERON:0003631 ! pedal digit 1 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! pedal digit 1 @@ -79301,7 +79449,8 @@ xref: SCTID:361800004 xref: UMLS:C1708082 xref: ncithesaurus:Foot_Digit_2_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element relationship: part_of UBERON:0003632 ! pedal digit 2 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! pedal digit 2 @@ -79327,7 +79476,8 @@ xref: SCTID:361802007 xref: UMLS:C1708084 xref: ncithesaurus:Foot_Digit_3_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element relationship: part_of UBERON:0003633 ! pedal digit 3 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! pedal digit 3 @@ -79392,7 +79542,8 @@ xref: UMLS:C1708987 xref: ncithesaurus:Metacarpal_Bone_Digit_1 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element relationship: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 @@ -79435,7 +79586,8 @@ xref: UMLS:C1708988 xref: ncithesaurus:Metacarpal_Bone_Digit_2 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element relationship: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 @@ -79480,7 +79632,8 @@ xref: Wikipedia:Third_metacarpal_bone xref: ncithesaurus:Metacarpal_Bone_Digit_3 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element relationship: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 @@ -79524,7 +79677,8 @@ xref: UMLS:C1708990 xref: ncithesaurus:Metacarpal_Bone_Digit_4 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element relationship: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 @@ -79568,7 +79722,8 @@ xref: UMLS:C1711224 xref: ncithesaurus:Metacarpal_Bone_Digit_5 is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element relationship: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 @@ -79600,7 +79755,8 @@ xref: UMLS:C1708999 xref: ncithesaurus:Metatarsal_Bone_Digit_1 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013581 ! metapodium bone 1 -relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 @@ -79630,7 +79786,8 @@ xref: UMLS:C1709000 xref: ncithesaurus:Metatarsal_Bone_Digit_2 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013582 ! metapodium bone 2 -relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 @@ -79661,7 +79818,8 @@ xref: Wikipedia:Third_metatarsal_bone xref: ncithesaurus:Metatarsal_Bone_Digit_3 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013583 ! metapodium bone 3 -relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 @@ -79691,7 +79849,8 @@ xref: UMLS:C1709002 xref: ncithesaurus:Metatarsal_Bone_Digit_4 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013584 ! metapodium bone 4 -relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 @@ -79721,7 +79880,8 @@ xref: UMLS:C1709003 xref: ncithesaurus:Metatarsal_Bone_Digit_5 is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013585 ! metapodium bone 5 -relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 @@ -82353,7 +82513,8 @@ xref: SCTID:361804008 xref: UMLS:C1708086 xref: ncithesaurus:Foot_Digit_4_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element relationship: part_of UBERON:0003634 ! pedal digit 4 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! pedal digit 4 @@ -82381,7 +82542,8 @@ xref: SCTID:361806005 xref: UMLS:C1708088 xref: ncithesaurus:Foot_Digit_5_Phalanx is_a: UBERON:0001449 ! phalanx of pes -relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element relationship: part_of UBERON:0003635 ! pedal digit 5 intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! pedal digit 5 @@ -83869,7 +84031,6 @@ id: UBERON:0003957 name: Bruch's membrane namespace: uberon def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] -comment: TODO - see also subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] synonym: "Bruch's basal membrane" EXACT [FMA:58438] @@ -84032,7 +84193,7 @@ synonym: "gonium" EXACT [MP:0008380] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0003967 @@ -93645,7 +93806,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone id: UBERON:0004547 name: decidua capsularis namespace: uberon -def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] xref: FMA:86478 xref: MA:0002906 xref: SCTID:255498003 @@ -93937,8 +94098,9 @@ namespace: uberon def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology -synonym: "Costa prima (I)" EXACT [FMA:7597] +synonym: "costa I" EXACT LATIN [] synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib] +synonym: "costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: MA:0001401 @@ -93958,8 +94120,9 @@ namespace: uberon def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology -synonym: "Costa secunda (II)" EXACT [FMA:7620] +synonym: "costa II" EXACT LATIN [] synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib] +synonym: "costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: MA:0001402 @@ -93978,6 +94141,7 @@ name: rib 3 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa III" EXACT LATIN [] synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 @@ -93993,6 +94157,7 @@ name: rib 4 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa IV" EXACT LATIN [] synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 @@ -94008,6 +94173,7 @@ name: rib 5 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa V" EXACT LATIN [] synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 @@ -94023,6 +94189,7 @@ name: rib 6 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VI" EXACT LATIN [] synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 @@ -94038,6 +94205,7 @@ name: rib 7 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VII" EXACT LATIN [] synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 @@ -94053,6 +94221,7 @@ name: rib 9 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa IX" EXACT LATIN [] synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 @@ -94069,6 +94238,7 @@ namespace: uberon def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa X" EXACT LATIN [] synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: MA:0001410 @@ -94088,6 +94258,7 @@ namespace: uberon def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa XI" EXACT LATIN [] synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: MA:0001411 @@ -94106,6 +94277,7 @@ namespace: uberon def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa XII" EXACT LATIN [] synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: MA:0001412 @@ -94582,14 +94754,18 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: SCTID:361515007 xref: VHOG:0000854 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010363 ! endochondral element -relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015020 ! otic capsule endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010351 ! otic capsule cartilage element relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string @@ -95777,7 +95953,7 @@ intersection_of: part_of UBERON:0001004 ! respiratory system id: UBERON:0004703 name: dorsal thalamus namespace: uberon -comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 +comment: TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core ! core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] @@ -95796,6 +95972,7 @@ xref: ZFA:0000653 xref: ncithesaurus:Dorsal_Thalamus is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +property_value: present_in_taxon NCBITaxon:7776 [Term] id: UBERON:0004704 @@ -96687,8 +96864,8 @@ xref: Wikipedia:Articular xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone -relationship: develops_from UBERON:0011002 ! articular cartilage condensation -relationship: homologous_to UBERON:0001689 ! malleus +relationship: develops_from UBERON:0011002 ! articular cartilage element +relationship: homologous_to UBERON:0001689 ! malleus bone property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string @@ -96767,11 +96944,16 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps supraoccipital-parietal joint (TAO:0005264)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string @@ -102353,8 +102535,7 @@ relationship: part_of UBERON:0001049 ! neural tube id: UBERON:0005070 name: anterior neuropore namespace: uberon -def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] -comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube +def: "The neuropore at the anterior (rostral) end of the neural tube." [UBERON:cjm] synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "rostral neuropore" EXACT [EMAPA:16523] @@ -102364,6 +102545,9 @@ xref: RETIRED_EHDAA2:0001768 xref: SCTID:361478000 xref: VHOG:0000768 is_a: UBERON:0005077 ! neuropore +relationship: in_anterior_side_of UBERON:0001049 ! neural tube +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_anterior_side_of UBERON:0001049 ! neural tube property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Anterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string @@ -102371,7 +102555,7 @@ property_value: external_definition "Anterior site of neural tube closure. [Evol id: UBERON:0005071 name: posterior neuropore namespace: uberon -def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] +def: "The neuropore at the posterior (caudal) end of the neural tube." [UBERON:cjm] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA2:0000676 xref: EHDAA:900 @@ -102380,6 +102564,9 @@ xref: RETIRED_EHDAA2:0000223 xref: SCTID:361479008 xref: VHOG:0000769 is_a: UBERON:0005077 ! neuropore +relationship: in_posterior_side_of UBERON:0001049 ! neural tube +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_posterior_side_of UBERON:0001049 ! neural tube property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Posterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string @@ -102430,30 +102617,34 @@ intersection_of: adjacent_to UBERON:0002240 ! spinal cord id: UBERON:0005077 name: neuropore namespace: uberon -def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] xref: SCTID:360408007 +is_a: UBERON:0000161 ! orifice is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: connects UBERON:0003842 ! neural tube lumen relationship: part_of UBERON:0001049 ! neural tube +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore [Term] id: UBERON:0005078 -name: lamina terminalis of forebrain vesicle +name: lamina terminalis of neural tube namespace: uberon -def: "The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development." [Wikipedia:Lamina_terminalis] -synonym: "lamina terminalis" EXACT [FMA:61975] -xref: BAMS:LT +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT xref: EHDAA2:0000903 +xref: EHDAA:1983 +xref: EHDAA:2661 xref: EMAPA:16649 xref: EMAPA:16904 -xref: FMA:61975 xref: NeuroNames:208 -xref: SCTID:361483008 xref: VHOG:0001547 -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: part_of UBERON:0006222 ! future diencephalon property_value: homologous_in NCBITaxon:7742 @@ -105928,7 +106119,7 @@ xref: MA:0002987 xref: SCTID:368926004 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005343 @@ -106135,7 +106326,7 @@ namespace: uberon def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 @@ -106152,7 +106343,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005356 @@ -107244,8 +107435,10 @@ synonym: "auditory capsule" EXACT [ZFA:0001500] xref: EMAPA:18803 xref: TAO:0001500 xref: ZFA:0001500 -is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004637 ! otic capsule +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010351 ! otic capsule cartilage element +is_a: UBERON:0014387 ! mesenchyme derived from neural crest property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: external_definition "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string @@ -107719,7 +107912,7 @@ relationship: supplies UBERON:0002240 ! spinal cord id: UBERON:0005432 name: aortic sac namespace: uberon -def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac] +def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] xref: EHDAA2:0004145 xref: EHDAA:9826 xref: FMA:71008 @@ -107732,6 +107925,7 @@ is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004363 ! aortic arch relationship: part_of UBERON:0004145 ! outflow tract +property_value: external_definition "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string [Term] id: UBERON:0005433 @@ -111141,16 +111335,21 @@ intersection_of: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0005687 -name: orbitosphenoid cartilage condensation +name: orbitosphenoid cartilage element namespace: uberon -synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329] +synonym: "sphenoid lesser wing cartilage element" RELATED [EHDAA2:0001329] xref: EHDAA2:0001329 xref: EHDAA:9554 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0005688 @@ -111619,8 +111818,7 @@ xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube relationship: develops_from UBERON:0003306 ! floor plate of neural tube relationship: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0003079 ! floor plate @@ -112853,7 +113051,7 @@ is_a: UBERON:0005856 ! developing mesenchymal condensation id: UBERON:0005866 name: pre-cartilage condensation namespace: uberon -def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage] +def: "A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts." [AEO:0000150, AEO:JB] synonym: "pre-chondrogenic condensation" EXACT [] synonym: "precartilage condensation" EXACT [] synonym: "precartilagenous condensation" EXACT [] @@ -112863,6 +113061,7 @@ xref: EHDAA2:0003150 xref: EMAPA:32736 is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: part_of UBERON:0004288 ! skeleton +property_value: external_definition "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." xsd:string [Term] id: UBERON:0005867 @@ -115022,7 +115221,8 @@ xref: UMLS:C0223616 xref: galen:CoccygealVertebra xref: ncithesaurus:Coccygeal_Vertebra is_a: UBERON:0001095 ! caudal vertebra -relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element +relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage element relationship: part_of UBERON:0001350 ! coccyx intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx @@ -116568,16 +116768,22 @@ property_value: homology_notes "Mammals have a third type of tympanic ear. An ex [Term] id: UBERON:0006209 -name: basioccipital cartilage condensation +name: basioccipital cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000164 xref: EHDAA:7141 xref: EMAPA:18337 xref: VHOG:0001124 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015048 ! basioccipital endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009197 ! basioccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -116594,9 +116800,12 @@ is_a: UBERON:0003104 ! mesenchyme id: UBERON:0006211 name: buccopharyngeal membrane namespace: uberon -def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] +def: "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." [MP:0012521] subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked +synonym: "oral membrane" RELATED [MP:0012521] +synonym: "oral plate" RELATED [MP:0012521] synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] +synonym: "pharyngeal membrane" RELATED INCONSISTENT [MP:0012521] xref: EHDAA2:0000189 xref: EHDAA:536 xref: EMAPA:16259 @@ -116634,15 +116843,17 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006213 -name: carpus cartilage condensation +name: carpus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a carpal bone." [OBOL:automatic] xref: EHDAA2:0000221 xref: EHDAA:8544 xref: EMAPA:18102 xref: VHOG:0001123 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0010377 ! mesenchyme from somatopleure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001435 ! carpal bone intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -116658,8 +116869,11 @@ xref: EHDAA2:0000222 xref: EHDAA:6324 xref: EMAPA:17724 xref: VHOG:0000955 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0009523 ! mesenchyme of handplate +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region relationship: has_potential_to_develop_into UBERON:0001435 ! carpal bone relationship: part_of UBERON:0009523 ! mesenchyme of handplate @@ -116874,8 +117088,12 @@ xref: EHDAA:8355 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015051 ! exoccipital endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -116950,8 +117168,14 @@ subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117119,7 +117343,7 @@ relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 -name: humerus cartilage condensation +name: humerus cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000787 @@ -117127,11 +117351,16 @@ xref: EHDAA:6240 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005258 ! upper arm mesenchyme -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015053 ! humerus endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006246 ! humerus pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -117144,10 +117373,15 @@ xref: EHDAA:4192 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005258 ! upper arm mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117159,10 +117393,13 @@ xref: EHDAA2:0000809 xref: EHDAA:9568 xref: EMAPA:18029 xref: VHOG:0000964 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117176,8 +117413,11 @@ xref: EHDAA:9024 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015017 ! incus endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0010042 ! 1st arch mesenchyme +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117254,16 +117494,20 @@ property_value: homology_notes " (...) an essentially similar sequence of events [Term] id: UBERON:0006254 -name: ischial cartilage condensation +name: ischial cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0000890 xref: EHDAA:9570 xref: EMAPA:26930 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015056 ! ischial endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006255 ! ischial pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0006255 @@ -117274,9 +117518,12 @@ xref: EHDAA2:0000891 xref: EHDAA:7153 xref: EMAPA:18348 xref: VHOG:0000962 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117389,7 +117636,11 @@ xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003107 ! Meckel's cartilage +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117804,28 +118055,31 @@ xref: EHDAA:9572 xref: EMAPA:18349 xref: EMAPA:26928 xref: VHOG:0000965 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006286 -name: radius cartilage condensation +name: radius cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a radius bone." [OBOL:automatic] xref: EHDAA2:0001585 xref: EHDAA:7267 xref: EMAPA:18054 xref: VHOG:0001318 -is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015001 ! radius endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010846 ! radius pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -117838,13 +118092,17 @@ xref: EHDAA:4178 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006288 -name: rib cartilage condensation +name: rib cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001716 @@ -117852,10 +118110,16 @@ xref: EHDAA:8347 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015019 ! rib endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006289 ! rib pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -117868,15 +118132,20 @@ xref: EHDAA:6026 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003089 ! sclerotome relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006290 -name: scapula cartilage condensation +name: scapula cartilage element namespace: uberon subset: emapa_ehdaa2 ! derived from the union of EHDAA2 and EMAPA - still to be checked xref: EHDAA2:0001777 @@ -117885,10 +118154,15 @@ xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015057 ! scapula endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006291 ! scapula pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -117903,10 +118177,14 @@ xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015057 ! scapula endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -117961,8 +118239,12 @@ xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0015016 ! stapes endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001686 ! auditory ossicle +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -118098,22 +118380,22 @@ property_value: homology_notes "Soon after it forms, the mammalian lens becomes [Term] id: UBERON:0006306 -name: ulna cartilage condensation +name: ulna cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a ulna." [OBOL:automatic] xref: EHDAA2:0002098 xref: EHDAA:7269 xref: EMAPA:18055 xref: VHOG:0001155 -is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015003 ! ulna endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010847 ! ulna pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] @@ -122398,10 +122680,14 @@ synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0003466 ! forelimb zeugopod bone -relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element relationship: has_fused_element UBERON:0001423 ! radius bone relationship: has_fused_element UBERON:0001424 ! ulna relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0006716 @@ -122547,11 +122833,15 @@ xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015058 ! alisphenoid endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009637 ! alisphenoid ossification center -relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation +relationship: develops_from UBERON:0010733 ! alisphenoid cartilage element relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0008895 ! splanchnocranium +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0006722 @@ -122569,7 +122859,7 @@ xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone relationship: surrounded_by UBERON:0002364 ! tympanic membrane [Term] @@ -123539,6 +123829,7 @@ xref: Wikipedia:Exoccipital_condyle xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -123595,7 +123886,7 @@ property_value: external_definition "Also known as loose connective tissue. A pl id: UBERON:0006820 name: body of sternum namespace: uberon -def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MGI:anna, Wikipedia:Body_of_sternum] +def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum] @@ -124005,10 +124296,14 @@ xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles- xref: ncithesaurus:Scapula is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0015057 ! scapula endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: develops_from UBERON:0006290 ! scapula cartilage condensation +relationship: develops_from UBERON:0006290 ! scapula cartilage element relationship: distally_connected_to UBERON:0007272 ! pectoral appendage skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string @@ -128654,12 +128949,16 @@ is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 -name: incus cartilage condensation +name: incus cartilage element namespace: uberon xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015017 ! incus endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0007375 @@ -130327,7 +130626,7 @@ xref: Wikipedia:Interphalangeal_articulations_of_the_hand xref: ncithesaurus:Interphalangeal_Joint_of_the_Hand is_a: UBERON:0001489 ! manus joint is_a: UBERON:0006658 ! interphalangeal joint -relationship: connects UBERON:0001436 ! phalanx of manus +relationship: connects UBERON:0001436 {cardinality="2"} ! phalanx of manus relationship: part_of UBERON:0002389 ! manual digit intersection_of: UBERON:0006658 ! interphalangeal joint intersection_of: part_of UBERON:0002389 ! manual digit @@ -131855,10 +132154,14 @@ namespace: uberon def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] xref: Wikipedia:Tibiotarsus is_a: UBERON:0003464 ! hindlimb bone -relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element relationship: has_fused_element UBERON:0000979 ! tibia relationship: has_fused_element UBERON:0001447 ! tarsal bone relationship: part_of UBERON:0001441 ! hindlimb skeleton +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0008195 @@ -131868,10 +132171,14 @@ def: "The tarsometatarsus is a bone that is found in the lower leg of certain te comment: Taxon notes: found in birds[VSAO] xref: Wikipedia:Tarsometatarsus is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element relationship: has_fused_element UBERON:0001448 ! metatarsal bone relationship: has_fused_element UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0001445 ! skeleton of pes +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue [Term] id: UBERON:0008196 @@ -132161,8 +132468,7 @@ id: UBERON:0008254 name: styliform cartilage namespace: uberon def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element relationship: homologous_to UBERON:0001429 ! pisiform relationship: part_of UBERON:0001440 ! forelimb skeleton @@ -136783,7 +137089,8 @@ xref: UMLS:C0003793 xref: ncithesaurus:Bone_of_the_Upper_Extremity is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex -relationship: develops_from UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: develops_from UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002102 ! forelimb intersection_of: UBERON:0002428 ! limb bone @@ -136983,7 +137290,7 @@ xref: UMLS:C0015641 xref: Wikipedia:Fascia xref: ncithesaurus:Fascia is_a: UBERON:0007846 ! dense regular connective tissue -relationship: connects UBERON:0001630 {cardinality="2"} ! muscle organ +relationship: connects UBERON:0001630 ! muscle organ relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] @@ -138360,8 +138667,14 @@ xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0009192 @@ -138379,14 +138692,21 @@ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 -name: sphenoid bone cartilage condensation +name: sphenoid cartilage element namespace: uberon +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0009194 @@ -138399,8 +138719,9 @@ xref: VHOG:0001338 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 ! basisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element property_value: homologous_in NCBITaxon:7742 [Term] @@ -138435,8 +138756,12 @@ xref: EHDAA:6033 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:0002241 ! chondrocranium +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -138565,13 +138890,14 @@ relationship: part_of UBERON:0001716 ! secondary palate id: UBERON:0009210 name: pharyngeal membrane namespace: uberon -def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: UMLS:C1519040 xref: ncithesaurus:Pharyngeal_Membrane is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0000924 ! ectoderm relationship: has_part UBERON:0000925 ! endoderm +relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009213 @@ -140201,7 +140527,7 @@ is_a: UBERON:0010355 ! ossification center id: UBERON:0009638 name: orbitosphenoid ossification center namespace: uberon -comment: merge with sphenoid lesser wing cartilage condensation? +comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -141490,6 +141816,7 @@ name: lower rhombic lip namespace: uberon def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain @@ -141504,6 +141831,7 @@ synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 @@ -141600,9 +141928,14 @@ id: UBERON:0009848 name: zona limitans intrathalamica namespace: uberon def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, GO_REF:0000021, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "ZLI" EXACT [GO:0022006] +comment: Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 +synonym: "MDO" RELATED ABBREVIATION [https://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica +xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line relationship: adjacent_to UBERON:0001900 ! ventral thalamus @@ -143736,25 +144069,32 @@ is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 -name: malleus cartilage condensation +name: malleus cartilage element namespace: uberon xref: EMAPA:18229 is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010055 -name: stapes cartilage condensation +name: stapes cartilage element namespace: uberon comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. xref: EMAPA:18230 -is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011607 ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010056 @@ -144001,7 +144341,7 @@ id: UBERON:0010078 name: optic choroid vascular plexus namespace: uberon alt_id: ZFA:0005228 -comment: Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex +comment: Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex synonym: "CVP" EXACT ABBREVIATION [ZFA:0005094] synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] @@ -144016,7 +144356,7 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0002200 ! vasculature of head -property_value: external_definition "A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]." xsd:string +property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]." xsd:string property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string @@ -144203,16 +144543,21 @@ intersection_of: has_potential_to_develop_into UBERON:0003962 ! pterygopalatine [Term] id: UBERON:0010129 -name: femur cartilage condensation +name: femur cartilage element namespace: uberon comment: TODO - request EHDAA2 synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur relationship: part_of UBERON:0005254 ! upper leg mesenchyme +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010130 @@ -146702,28 +147047,31 @@ name: otic capsule pre-cartilage condensation namespace: uberon synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010351 -name: otic capsule cartilage condensation +name: otic capsule cartilage element namespace: uberon xref: EHDAA2:0001333 xref: EHDAA:4704 xref: EMAPA:17596 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element relationship: adjacent_to UBERON:0001694 ! petrous part of temporal bone +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010349 ! otic capsule pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010354 @@ -148188,7 +148536,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsal b xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region relationship: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: part_of UBERON:0001445 ! skeleton of pes @@ -148199,13 +148549,14 @@ intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone [Term] id: UBERON:0010541 -name: tarsus cartilage condensation +name: tarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: develops_from UBERON:0010540 ! tarsus pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: part_of UBERON:0001445 ! skeleton of pes @@ -148266,7 +148617,8 @@ xref: Wikipedia:Metacarpus xref: XAO:0003208 xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium relationship: proximally_connected_to UBERON:0009880 ! carpal skeleton @@ -148300,7 +148652,8 @@ xref: XAO:0003212 xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png is_a: UBERON:0010546 ! metapodial skeleton -relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium relationship: proximally_connected_to UBERON:0009879 ! tarsal skeleton @@ -148346,6 +148699,7 @@ xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -148362,6 +148716,7 @@ xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -148378,6 +148733,7 @@ xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -148394,6 +148750,7 @@ xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -148410,88 +148767,94 @@ xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010557 -name: pedal digit 1 metatarsal cartilage condensation +name: pedal digit 1 metatarsal cartilage element namespace: uberon def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010558 -name: pedal digit 2 metatarsal cartilage condensation +name: pedal digit 2 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 2 metatarsal cartilage condensation" EXACT [] +synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010559 -name: pedal digit 3 metatarsal cartilage condensation +name: pedal digit 3 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 3 metatarsal cartilage condensation" EXACT [] +synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010560 -name: pedal digit 4 metatarsal cartilage condensation +name: pedal digit 4 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 4 metatarsal cartilage condensation" EXACT [] +synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010561 -name: pedal digit 5 metatarsal cartilage condensation +name: pedal digit 5 metatarsal cartilage element namespace: uberon -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "hind limb digit 5 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 5 metatarsal cartilage condensation" EXACT [] +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] @@ -148535,6 +148898,7 @@ xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -148552,6 +148916,7 @@ xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -148569,6 +148934,7 @@ xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -148586,6 +148952,7 @@ xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -148603,98 +148970,104 @@ xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010570 -name: manual digit 1 metacarpus cartilage condensation +name: manual digit 1 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] -synonym: "finger 1 metacarpus cartilage condensation" EXACT [EHDAA2:0000514] -synonym: "fore limb digit 1 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 1 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010571 -name: manual digit 2 metacarpus cartilage condensation +name: manual digit 2 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] -synonym: "finger 2 metacarpus cartilage condensation" EXACT [EHDAA2:0000520] -synonym: "fore limb digit 2 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 2 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010572 -name: manual digit 3 metacarpus cartilage condensation +name: manual digit 3 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] -synonym: "finger 3 metacarpus cartilage condensation" EXACT [EHDAA2:0000526] -synonym: "fore limb digit 3 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 3 cartilage condensation" EXACT [] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010573 -name: manual digit 4 metacarpus cartilage condensation +name: manual digit 4 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] -synonym: "fore limb digit 4 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 4 cartilage condensation" EXACT [] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010574 -name: manual digit 5 metacarpus cartilage condensation +name: manual digit 5 metacarpus cartilage element namespace: uberon -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] -synonym: "fore limb digit 5 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 5 cartilage condensation" EXACT [] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] @@ -148708,6 +149081,7 @@ xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010564 ! manual digit 1 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -148723,6 +149097,7 @@ xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0005692 ! manual digit 2 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -148738,6 +149113,7 @@ xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0005693 ! manual digit 3 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -148753,6 +149129,7 @@ xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0005694 ! manual digit 4 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -148768,6 +149145,7 @@ xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0005695 ! manual digit 5 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -148783,6 +149161,7 @@ xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -148798,6 +149177,7 @@ xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -148813,6 +149193,7 @@ xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -148828,6 +149209,7 @@ xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -148843,6 +149225,7 @@ xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -148861,6 +149244,8 @@ xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0005255 ! pedal digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: part_of UBERON:0005255 ! pedal digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme @@ -148880,6 +149265,8 @@ xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0005257 ! manual digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: part_of UBERON:0005257 ! manual digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme @@ -148887,14 +149274,15 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010675 -name: manual digit 1 phalanx cartilage condensation +name: manual digit 1 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18066 is_a: UBERON:0010564 ! manual digit 1 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148902,14 +149290,15 @@ intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010676 -name: manual digit 2 phalanx cartilage condensation +name: manual digit 2 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18071 is_a: UBERON:0005692 ! manual digit 2 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148917,14 +149306,15 @@ intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010677 -name: manual digit 3 phalanx cartilage condensation +name: manual digit 3 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18076 is_a: UBERON:0005693 ! manual digit 3 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148932,14 +149322,15 @@ intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010678 -name: manual digit 4 phalanx cartilage condensation +name: manual digit 4 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18081 is_a: UBERON:0005694 ! manual digit 4 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148947,14 +149338,15 @@ intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010679 -name: manual digit 5 phalanx cartilage condensation +name: manual digit 5 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18086 is_a: UBERON:0005695 ! manual digit 5 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148962,14 +149354,15 @@ intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010680 -name: pedal digit 1 phalanx cartilage condensation +name: pedal digit 1 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18107 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148977,14 +149370,15 @@ intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010681 -name: pedal digit 2 phalanx cartilage condensation +name: pedal digit 2 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18112 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -148992,14 +149386,15 @@ intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010682 -name: pedal digit 3 phalanx cartilage condensation +name: pedal digit 3 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18117 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -149007,14 +149402,15 @@ intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010683 -name: pedal digit 4 phalanx cartilage condensation +name: pedal digit 4 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18122 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -149022,14 +149418,15 @@ intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010684 -name: pedal digit 5 phalanx cartilage condensation +name: pedal digit 5 phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18127 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -149037,14 +149434,15 @@ intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010685 -name: pedal digit phalanx cartilage condensation +name: pedal digit phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] -synonym: "foot digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0005255 ! pedal digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation relationship: part_of UBERON:0005255 ! pedal digit mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -149052,14 +149450,15 @@ intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme [Term] id: UBERON:0010686 -name: manual digit phalanx cartilage condensation +name: manual digit phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0005257 ! manual digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -149076,7 +149475,11 @@ synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: VHOG:0000948 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005255 ! pedal digit mesenchyme +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] @@ -149171,15 +149574,21 @@ intersection_of: part_of UBERON:0002387 ! pes [Term] id: UBERON:0010697 -name: pedal digit metatarsal cartilage condensation +name: pedal digit metatarsal cartilage element namespace: uberon comment: Editor note: EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32951 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0015064 ! autopod cartilage +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010698 @@ -149193,22 +149602,32 @@ synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010699 -name: manual digit metacarpus cartilage condensation +name: manual digit metacarpus cartilage element namespace: uberon -synonym: "finger metacarpus cartilage condensation" EXACT [] -synonym: "fore limb digit metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpal cartilage condensation" EXACT [] -synonym: "metacarpus cartilage condensation" EXACT [] +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010700 @@ -149216,9 +149635,9 @@ name: phalanx pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32720 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element relationship: part_of UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0010702 ! digit mesenchyme intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -149226,13 +149645,13 @@ intersection_of: part_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0010701 -name: phalanx cartilage condensation +name: phalanx cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32721 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation relationship: part_of UBERON:0006717 ! autopodial skeleton relationship: part_of UBERON:0010702 ! digit mesenchyme @@ -149432,26 +149851,34 @@ property_value: external_definition "Skeletal system that consists of the paired [Term] id: UBERON:0010714 -name: iliac cartilage condensation +name: iliac cartilage element namespace: uberon xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006247 ! iliac pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010718 -name: pubic cartilage condensation +name: pubic cartilage element namespace: uberon xref: EHDAA2:0001573 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006285 ! pubic pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010719 @@ -149512,8 +149939,13 @@ xref: Wikipedia:Cuneiform_%28anatomy%29 xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png xref: ncithesaurus:Cuneiform_Bone_of_the_Foot is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage relationship: distally_connected_to UBERON:0001448 ! metatarsal bone relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string [Term] @@ -149588,10 +150020,15 @@ id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation namespace: uberon xref: EHDAA2:0003449 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010732 @@ -149602,22 +150039,34 @@ xref: EHDAA2:0003448 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010733 -name: alisphenoid cartilage condensation +name: alisphenoid cartilage element namespace: uberon synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010732 ! alisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010737 @@ -149631,8 +150080,14 @@ synonym: "tarsal 4" EXACT [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -149647,8 +150102,14 @@ synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string [Term] @@ -149666,6 +150127,12 @@ synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string [Term] @@ -149738,21 +150205,28 @@ synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:00017 xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010745 -name: sacral vertebra cartilage condensation +name: sacral vertebra cartilage element namespace: uberon synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0005179 ! pelvic region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010744 ! sacral vertebra pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010746 @@ -149859,13 +150333,19 @@ relationship: part_of UBERON:0004339 ! vault of skull [Term] id: UBERON:0010752 -name: exoccipital cartilage condensation +name: exoccipital cartilage element namespace: uberon xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010753 @@ -149942,6 +150422,7 @@ name: rib 8 namespace: uberon comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series ! classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology +synonym: "costa VIII" EXACT LATIN [] synonym: "eighth rib" EXACT [FMA:8120] xref: FMA:8120 xref: MA:0001408 @@ -149997,26 +150478,36 @@ name: calcaneum pre-cartilage condensation namespace: uberon synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation [Term] id: UBERON:0010842 -name: calcaneum cartilage condensation +name: calcaneum cartilage element namespace: uberon -synonym: "calcaneous cartilage condensation" EXACT [] +synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010843 -name: clavicle cartilage condensation +name: clavicle cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a clavicle." [OBOL:automatic] comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] @@ -150049,7 +150540,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a radius b comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: part_of UBERON:0003327 ! mesenchyme of forearm @@ -150065,7 +150558,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a ulna." [ xref: EHDAA2:0002100 xref: EHDAA:6226 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: part_of UBERON:0003327 ! mesenchyme of forearm @@ -150075,32 +150570,36 @@ intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna [Term] id: UBERON:0010848 -name: radius-ulna cartilage condensation +name: radius-ulna cartilage element namespace: uberon comment: AO notes: note that this is not represented as a single unit in EHDAA2 synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010849 -name: tibia cartilage condensation +name: tibia cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EMAPA:18155 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010850 @@ -150109,7 +150608,9 @@ namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element relationship: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton @@ -150118,20 +150619,20 @@ intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia [Term] id: UBERON:0010851 -name: fibula cartilage condensation +name: fibula cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] xref: EMAPA:18154 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010852 @@ -150143,7 +150644,9 @@ synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA2:0000509 xref: EHDAA:6196 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element relationship: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -150355,10 +150858,12 @@ property_value: present_in_taxon NCBITaxon:9590 [Term] id: UBERON:0010881 -name: limb bone cartilage condensation +name: limb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: part_of UBERON:0002091 ! appendicular skeleton @@ -150371,6 +150876,8 @@ name: limb bone pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element relationship: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: part_of UBERON:0002091 ! appendicular skeleton intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -150378,19 +150885,18 @@ intersection_of: has_potential_to_develop_into UBERON:0002428 ! limb bone [Term] id: UBERON:0010883 -name: forelimb bone cartilage condensation +name: forelimb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a forelimb bone." [OBOL:automatic] subset: grouping_class ! Subset consisting of classes creating for grouping purposes -synonym: "wing bone cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] -is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +relationship: part_of UBERON:0002102 ! forelimb +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010884 @@ -150400,26 +150906,25 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a forelimb subset: grouping_class ! Subset consisting of classes creating for grouping purposes synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010885 -name: hindlimb bone cartilage condensation +name: hindlimb cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] -is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0001441 ! hindlimb skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +relationship: part_of UBERON:0002103 ! hindlimb +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010886 @@ -150427,12 +150932,12 @@ name: hindlimb bone pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010887 @@ -150618,22 +151123,26 @@ intersection_of: has_part UBERON:0000992 ! female gonad [Term] id: UBERON:0010900 -name: tarsometatarsus cartilage condensation +name: tarsometatarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: part_of UBERON:0001445 ! skeleton of pes -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: part_of UBERON:0001445 ! skeleton of pes intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -150641,22 +151150,25 @@ intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus [Term] id: UBERON:0010902 -name: tibiotarsus cartilage condensation +name: tibiotarsus cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: part_of UBERON:0001441 ! hindlimb skeleton -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation namespace: uberon def: "A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: part_of UBERON:0001441 ! hindlimb skeleton intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -151521,7 +152033,7 @@ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0011002 -name: articular cartilage condensation +name: articular cartilage element namespace: uberon synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] xref: TAO:0001670 @@ -151989,7 +152501,7 @@ intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0011094 -name: vertebra cartilage condensation +name: vertebra cartilage element namespace: uberon def: "A cartilaginous condensation that is part of a vertebral column." [OBOL:automatic] comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups @@ -151998,6 +152510,7 @@ xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010913 ! vertebral element +is_a: UBERON:0015005 ! vertebra endochondral element relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra relationship: part_of UBERON:0001130 ! vertebral column @@ -152013,8 +152526,8 @@ def: "A pre-cartilage condensation that is part of a vertebral column." [OBOL:au synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element relationship: develops_from UBERON:0003089 ! sclerotome relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra relationship: part_of UBERON:0001130 ! vertebral column @@ -152807,20 +153320,21 @@ intersection_of: connects UBERON:0006428 ! basisphenoid bone [Term] id: UBERON:0011162 -name: supraoccipital cartilage condensation +name: supraoccipital cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue [Term] id: UBERON:0011163 @@ -152830,8 +153344,8 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a supraocc synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA2:0001963 xref: EHDAA:9534 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element relationship: develops_from UBERON:0009617 ! head paraxial mesoderm relationship: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium @@ -153877,10 +154391,11 @@ name: autopod bone namespace: uberon def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone -relationship: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0006717 ! autopodial skeleton -intersection_of: UBERON:0001474 ! bone element -intersection_of: part_of UBERON:0002470 ! autopod region +is_a: UBERON:0015063 ! autopod endochondral element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: implements_design_pattern http://purl.obolibrary.org/obo/uberon/references/reference_0000015 [Term] @@ -155870,7 +156385,7 @@ is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme -relationship: part_of UBERON:0001688 ! incus +relationship: part_of UBERON:0001688 ! incus bone [Term] id: UBERON:0011601 @@ -155962,7 +156477,10 @@ xref: Wikipedia:Hyomandibula xref: ZFA:0000672 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011608 ! hyomandibular element +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011607 ! hyomandibular cartilage +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string @@ -155987,6 +156505,9 @@ xref: VHOG:0000688 xref: ZFA:0001422 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0011608 ! hyomandibular element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: homologous_in NCBITaxon:7742 property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO]" xsd:string property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string @@ -155997,12 +156518,13 @@ name: hyomandibular element namespace: uberon def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010522 ! replacement element +is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: homologous_in NCBITaxon:7742 property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string @@ -156806,6 +157328,8 @@ def: "A tarsal bone that connected_to a hindlimb zeugopod skeleton." [OBOL:autom is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0014395 ! proximal mesopodial bone relationship: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton intersection_of: UBERON:0001447 ! tarsal bone intersection_of: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton @@ -157688,6 +158212,8 @@ intersection_of: enclosed_by UBERON:0002087 ! atrioventricular canal id: UBERON:0011820 name: atrioventricular region namespace: uberon +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [GO:0003294] xref: EHDAA2:0004149 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -159696,12 +160222,14 @@ is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012080 -name: patella cartilage condensation +name: patella cartilage element namespace: uberon def: "A cartilaginous condensation that has_potential_to_develop_into a patella." [OBOL:automatic] comment: Note some sources have this as intramembranous xref: EMAPA:19140 -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element relationship: adjacent_to UBERON:0001485 ! knee joint relationship: develops_from UBERON:0012081 ! patella pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002446 ! patella @@ -159717,6 +160245,7 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a patella. xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002446 ! patella relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -159951,7 +160480,7 @@ xref: FMA:77271 xref: SCTID:410003009 xref: Wikipedia:Diastema_(dentistry) is_a: UBERON:0000464 ! anatomical space -relationship: adjacent_to UBERON:0001091 {cardinality="2"} ! calcareous tooth +relationship: adjacent_to UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001708 ! jaw skeleton relationship: part_of UBERON:0003672 ! dentition @@ -160171,8 +160700,11 @@ synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED PLURAL [] synonym: "os centrale" EXACT [FMA:77232] xref: FMA:77232 -is_a: UBERON:0003656 ! mesopodium bone -relationship: part_of UBERON:0009878 ! mesopodial skeleton +is_a: UBERON:0015067 ! centrale endochondral element +relationship: composed_primarily_of UBERON:0015067 ! centrale endochondral element +relationship: develops_from UBERON:0015077 ! centrale cartilage +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0015067 ! centrale endochondral element [Term] id: UBERON:0012132 @@ -160189,7 +160721,7 @@ synonym: "intercuneiform joints" RELATED [Wikipedia:Intercuneiform_articulations xref: FMA:35213 xref: Wikipedia:Intercuneiform_articulations is_a: UBERON:0000982 ! skeletal joint -relationship: connects UBERON:0010721 ! distal tarsal bone +relationship: connects UBERON:0010721 {cardinality="2"} ! distal tarsal bone [Term] id: UBERON:0012133 @@ -162613,6 +163145,7 @@ name: hemopoietic tissue namespace: uberon def: "Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue" [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] comment: Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] @@ -166053,10 +166586,10 @@ intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 -name: caudal vertebra cartilage condensation +name: caudal vertebra cartilage element namespace: uberon is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra relationship: part_of UBERON:0006076 ! caudal region of vertebral column @@ -166067,6 +166600,7 @@ intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation namespace: uberon +is_a: UBERON:0005174 ! dorsal region organ is_a: UBERON:0011095 ! vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra relationship: part_of UBERON:0006076 ! caudal region of vertebral column @@ -166075,12 +166609,12 @@ intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra [Term] id: UBERON:0013505 -name: cervical vertebra cartilage condensation +name: cervical vertebra cartilage element namespace: uberon synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -166092,6 +166626,7 @@ id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: part_of UBERON:0006072 ! cervical region of vertebral column intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -166099,11 +166634,12 @@ intersection_of: has_potential_to_develop_into UBERON:0002413 ! cervical vertebr [Term] id: UBERON:0013507 -name: thoracic vertebra cartilage condensation +name: thoracic vertebra cartilage element namespace: uberon synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -166114,7 +166650,8 @@ intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebr id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation namespace: uberon -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element relationship: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: part_of UBERON:0000915 ! thoracic segment of trunk intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -166122,13 +166659,12 @@ intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebr [Term] id: UBERON:0013509 -name: lumbar vertebra cartilage condensation +name: lumbar vertebra cartilage element namespace: uberon synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 -is_a: UBERON:0005173 ! abdominal segment organ -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: part_of UBERON:0006074 ! lumbar region of vertebral column @@ -166140,6 +166676,7 @@ id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: part_of UBERON:0006074 ! lumbar region of vertebral column intersection_of: UBERON:0005866 ! pre-cartilage condensation @@ -166214,11 +166751,12 @@ is_a: UBERON:0013515 ! subdivision of uterine tube [Term] id: UBERON:0013517 -name: coccygeal vertebra cartilage condensation +name: coccygeal vertebra cartilage element namespace: uberon synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] xref: EHDAA2:0000260 -is_a: UBERON:0013503 ! caudal vertebra cartilage condensation +is_a: UBERON:0013503 ! caudal vertebra cartilage element +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element relationship: develops_from UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra intersection_of: UBERON:0005863 ! cartilaginous condensation @@ -166229,6 +166767,7 @@ id: UBERON:0013518 name: coccygeal vertebra pre-cartilage condensation namespace: uberon is_a: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra @@ -167756,7 +168295,7 @@ property_value: external_definition "Anatomical region comprising the peripheral id: UBERON:0013683 name: left dorsal thalamus namespace: uberon -synonym: "left thalamus" EXACT [FMA:258716] +synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus relationship: in_left_side_of UBERON:0001894 ! diencephalon @@ -167767,7 +168306,7 @@ intersection_of: in_left_side_of UBERON:0001894 ! diencephalon id: UBERON:0013684 name: right dorsal thalamus namespace: uberon -synonym: "right thalamus" EXACT [FMA:258714] +synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus relationship: in_right_side_of UBERON:0001894 ! diencephalon @@ -169317,7 +169856,7 @@ xref: FMA:52770 xref: SCTID:368921009 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0014398 @@ -172557,6 +173096,7 @@ id: UBERON:0014734 name: allocortex namespace: uberon def: "The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -172590,9 +173130,12 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0014736 name: periallocortex namespace: uberon -synonym: "periallocortex" RELATED [NeuroNames:2315] +def: "agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] xref: NeuroNames:2315 -is_a: UBERON:0014734 ! allocortex +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: adjacent_to UBERON:0014734 ! allocortex +relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 @@ -174182,6 +174725,1378 @@ namespace: uberon is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 ! cerebral cortex +[Term] +id: UBERON:0014951 +name: proisocortex +namespace: uberon +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: NeuroNames:2311 +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +namespace: uberon +def: "A radius bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius element" EXACT [UBERON:endochondral] +synonym: "radius skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +namespace: uberon +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius-ulna element" EXACT [UBERON:endochondral] +synonym: "radius-ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +namespace: uberon +def: "A ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ulna element" EXACT [UBERON:endochondral] +synonym: "ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +namespace: uberon +def: "A tibia bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibia element" EXACT [UBERON:endochondral] +synonym: "tibia skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation + +[Term] +id: UBERON:0015005 +name: vertebra endochondral element +namespace: uberon +def: "A vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "vertebra element" EXACT [UBERON:endochondral] +synonym: "vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001130 ! vertebral column +union_of: UBERON:0002412 ! vertebra +union_of: UBERON:0011094 ! vertebra cartilage element +union_of: UBERON:0011095 ! vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015006 +name: coccygeal vertebra endochondral element +namespace: uberon +def: "A coccygeal vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "coccygeal vertebra element" EXACT [UBERON:endochondral] +synonym: "coccygeal vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001130 ! vertebral column +union_of: UBERON:0006070 ! coccygeal vertebra +union_of: UBERON:0013517 ! coccygeal vertebra cartilage element +union_of: UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +namespace: uberon +def: "A cervical vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "cervical vertebra element" EXACT [UBERON:endochondral] +synonym: "cervical vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0006072 ! cervical region of vertebral column +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +namespace: uberon +def: "A thoracic vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "thoracic vertebra element" EXACT [UBERON:endochondral] +synonym: "thoracic vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +namespace: uberon +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "lumbar vertebra element" EXACT [UBERON:endochondral] +synonym: "lumbar vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005173 ! abdominal segment organ +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +namespace: uberon +def: "A sacral vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sacral vertebra element" EXACT [UBERON:endochondral] +synonym: "sacral vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +namespace: uberon +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibiotarsus element" EXACT [UBERON:endochondral] +synonym: "tibiotarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0001441 ! hindlimb skeleton +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +namespace: uberon +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsometatarsus element" EXACT [UBERON:endochondral] +synonym: "tarsometatarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0001445 ! skeleton of pes +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +namespace: uberon +def: "A fibula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "fibula element" EXACT [UBERON:endochondral] +synonym: "fibula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +namespace: uberon +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "calcaneum element" EXACT [UBERON:endochondral] +synonym: "calcaneum skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +namespace: uberon +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "supraoccipital element" EXACT [UBERON:endochondral] +synonym: "supraoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +namespace: uberon +def: "A stapes bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "stapes element" EXACT [UBERON:endochondral] +synonym: "stapes skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element + +[Term] +id: UBERON:0015017 +name: incus endochondral element +namespace: uberon +def: "A incus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "incus element" EXACT [UBERON:endochondral] +synonym: "incus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +namespace: uberon +def: "A malleus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "malleus" RELATED [UBERON:endochondral] +synonym: "malleus element" EXACT [UBERON:endochondral] +synonym: "malleus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element + +[Term] +id: UBERON:0015019 +name: rib endochondral element +namespace: uberon +def: "A rib bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "rib element" EXACT [UBERON:endochondral] +synonym: "rib skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0014478 ! rib skeletal system +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation + +[Term] +id: UBERON:0015020 +name: otic capsule endochondral element +namespace: uberon +def: "A otic capsule bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "otic capsule element" EXACT [UBERON:endochondral] +synonym: "otic capsule skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region +union_of: UBERON:0004637 ! otic capsule +union_of: UBERON:0010349 ! otic capsule pre-cartilage condensation +union_of: UBERON:0010351 ! otic capsule cartilage element + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +namespace: uberon +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "forelimb skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +namespace: uberon +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "hindlimb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb bone pre-cartilage condensation + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +namespace: uberon +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "phalanx element" EXACT [UBERON:endochondral] +synonym: "phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0010543 ! acropodial skeleton +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +namespace: uberon +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +namespace: uberon +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0001463 ! manual digit 1 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +namespace: uberon +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003622 ! manual digit 2 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +namespace: uberon +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003623 ! manual digit 3 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +namespace: uberon +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003624 ! manual digit 4 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +namespace: uberon +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +relationship: part_of UBERON:0003625 ! manual digit 5 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +namespace: uberon +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +namespace: uberon +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003631 ! pedal digit 1 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +namespace: uberon +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003632 ! pedal digit 2 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +namespace: uberon +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003633 ! pedal digit 3 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +namespace: uberon +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003634 ! pedal digit 4 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +namespace: uberon +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +relationship: part_of UBERON:0003635 ! pedal digit 5 +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +namespace: uberon +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +namespace: uberon +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +namespace: uberon +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +namespace: uberon +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +namespace: uberon +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +namespace: uberon +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +namespace: uberon +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +namespace: uberon +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +namespace: uberon +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "basioccipital element" EXACT [UBERON:endochondral] +synonym: "basioccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +namespace: uberon +def: "A carpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "carpus element" EXACT [UBERON:endochondral] +synonym: "carpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +namespace: uberon +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsus element" EXACT [UBERON:endochondral] +synonym: "tarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +namespace: uberon +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "exoccipital element" EXACT [UBERON:endochondral] +synonym: "exoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element + +[Term] +id: UBERON:0015052 +name: femur endochondral element +namespace: uberon +def: "A femur bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "femur element" EXACT [UBERON:endochondral] +synonym: "femur skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0001441 ! hindlimb skeleton +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +namespace: uberon +def: "A humerus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "humerus element" EXACT [UBERON:endochondral] +synonym: "humerus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0003822 ! forelimb stylopod +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +namespace: uberon +def: "A iliac bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "iliac element" EXACT [UBERON:endochondral] +synonym: "iliac skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +namespace: uberon +def: "A pubic bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pubic element" EXACT [UBERON:endochondral] +synonym: "pubic skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +namespace: uberon +def: "A ischial bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ischial element" EXACT [UBERON:endochondral] +synonym: "ischial skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +namespace: uberon +def: "A scapula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "scapula element" EXACT [UBERON:endochondral] +synonym: "scapula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +namespace: uberon +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "alisphenoid element" EXACT [UBERON:endochondral] +synonym: "alisphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0008895 ! splanchnocranium +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +namespace: uberon +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "orbitosphenoid element" EXACT [UBERON:endochondral] +synonym: "orbitosphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +namespace: uberon +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sphenoid bone skeletal element" BROAD [UBERON:endochondral] +synonym: "sphenoid element" EXACT [UBERON:endochondral] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0011156 ! facial skeleton +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element + +[Term] +id: UBERON:0015061 +name: limb endochondral element +namespace: uberon +def: "A limb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "limb bone endochondral element" EXACT [UBERON:endochondral] +synonym: "limb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +relationship: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0004381 ! skeleton of limb +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation + +[Term] +id: UBERON:0015062 +name: bone condensation +namespace: uberon +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +namespace: uberon +is_a: UBERON:0015061 ! limb endochondral element +relationship: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0006717 ! autopodial skeleton +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015064 +name: autopod cartilage +namespace: uberon +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +namespace: uberon +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +comment: Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +namespace: uberon +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015068 ! distal carpal endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015077 +name: centrale cartilage +namespace: uberon +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton +relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015078 ! proximal carpal endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015081 +name: proximal tarsal bone endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +namespace: uberon +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +namespace: uberon +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015099 +name: distal tarsal bone endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +namespace: uberon +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +namespace: uberon +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +namespace: uberon +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +namespace: uberon +def: "The remnant of the lamina terminalis in the developed brain." [UBERON:cjm] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: SCTID:361483008 +xref: VHOG:0001547 +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0014532 ! lamina of cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter +relationship: transformation_of UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: UBERON:1000000 name: chin ventral margin @@ -174721,6 +176636,24 @@ is_a: UBERON:0001982 ! capillary is_a: UBERON:0004638 ! blood vessel endothelium property_value: external_definition "Blood vessel endothelium that has pores that allow passage small molecules and proteins[ZFA]." xsd:string +[Term] +id: UBERON:4300081 +name: mesopterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:4300082 +name: metapterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + +[Term] +id: UBERON:4300083 +name: propterygium element +namespace: uberon +is_a: UBERON:2101587 ! pectoral fin proximal radial element + [Typedef] id: adjacent_to name: adjacent_to @@ -175458,6 +177391,12 @@ inverse_of: in_proximal_side_of ! in_proximal_side_of xref: BSPO:0000125 is_a: part_of ! part_of +[Typedef] +id: in_dorsal_side_of +name: in_dorsal_side_of +namespace: uberon +is_a: part_of ! part_of + [Typedef] id: in_lateral_side_of name: in_lateral_side_of @@ -175528,6 +177467,12 @@ holds_over_chain: overlaps in_taxon ! in taxon holds_over_chain: part_of in_taxon ! in taxon holds_over_chain: supplies in_taxon ! in taxon +[Typedef] +id: in_ventral_side_of +name: in_ventral_side_of +namespace: uberon +is_a: part_of ! part_of + [Typedef] id: innervated name: innervated (UNDECLARED) @@ -177498,6 +179443,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -177552,6 +179498,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -186870,6 +188817,7 @@ comment: The supraoccipital crest may be small and restricted to the dorsal part synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -189753,6 +191701,7 @@ name: spina occipitalis namespace: uberon/phenoscape-anatomy def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -198217,8 +200166,7 @@ id: UBERON:3000921 name: element Y of hind mesopodium namespace: uberon/phenoscape-anatomy def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -198782,8 +200730,8 @@ id: UBERON:3010045 name: centrale 1 namespace: uberon/phenoscape-anatomy def: "Distal-most centrale when two are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -198815,8 +200763,8 @@ id: UBERON:3010060 name: centrale (fore) namespace: uberon/phenoscape-anatomy def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] -is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -198893,8 +200841,8 @@ id: UBERON:3010073 name: centrale 2 namespace: uberon/phenoscape-anatomy def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -199579,8 +201527,9 @@ name: postminimus namespace: uberon/phenoscape-anatomy def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -207795,6 +209744,10 @@ is_a: UBERON:0001638 ! vein id: AEO:0000212 is_a: UBERON:0003089 ! sclerotome +[Term] +id: AEO:0000213 +is_a: UBERON:0015062 ! bone condensation + [Term] id: AEO:0000214 is_a: UBERON:0004290 ! dermomyotome @@ -209990,12 +211943,11 @@ is_a: UBERON:0007628 ! lateral septal complex [Term] id: BAMS:LT -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle is_a: UBERON:0013600 ! lateral accessory nucleus of optic tract [Term] id: BAMS:LTer -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: BAMS:LTh @@ -214657,7 +216609,7 @@ is_a: UBERON:0002154 ! lateral reticular nucleus [Term] id: BM:LT -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: BM:MB @@ -215835,7 +217787,7 @@ is_a: UBERON:0002418 ! cartilage tissue [Term] id: BTO:0000207 -is_a: UBERON:0000313 ! tibial cartilage +is_a: UBERON:0000313 ! tibial cartilage tissue [Term] id: BTO:0000209 @@ -225945,7 +227897,7 @@ is_a: UBERON:0001633 ! basilar artery [Term] id: EHDAA2:0000164 -is_a: UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: EHDAA2:0000165 @@ -226090,7 +228042,7 @@ is_a: UBERON:0003319 ! mesenchyme of carpal region [Term] id: EHDAA2:0000221 -is_a: UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: EHDAA2:0000222 @@ -226134,7 +228086,7 @@ is_a: UBERON:0006072 ! cervical region of vertebral column [Term] id: EHDAA2:0000240 -is_a: UBERON:0013505 ! cervical vertebra cartilage condensation +is_a: UBERON:0013505 ! cervical vertebra cartilage element [Term] id: EHDAA2:0000242 @@ -226191,7 +228143,7 @@ is_a: UBERON:0001350 ! coccyx [Term] id: EHDAA2:0000260 -is_a: UBERON:0013517 ! coccygeal vertebra cartilage condensation +is_a: UBERON:0013517 ! coccygeal vertebra cartilage element [Term] id: EHDAA2:0000262 @@ -226644,7 +228596,7 @@ is_a: UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: EHDAA2:0000514 -is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage element [Term] id: EHDAA2:0000515 @@ -226668,7 +228620,7 @@ is_a: UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: EHDAA2:0000520 -is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage element [Term] id: EHDAA2:0000521 @@ -226692,7 +228644,7 @@ is_a: UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: EHDAA2:0000526 -is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage element [Term] id: EHDAA2:0000527 @@ -226716,7 +228668,7 @@ is_a: UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: EHDAA2:0000532 -is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage element [Term] id: EHDAA2:0000533 @@ -226740,7 +228692,7 @@ is_a: UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: EHDAA2:0000538 -is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage element [Term] id: EHDAA2:0000539 @@ -227145,7 +229097,7 @@ is_a: UBERON:0003320 ! mesenchyme of hip [Term] id: EHDAA2:0000787 -is_a: UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: EHDAA2:0000788 @@ -227193,7 +229145,7 @@ is_a: UBERON:0001898 ! hypothalamus [Term] id: EHDAA2:0000808 -is_a: UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0010714 ! iliac cartilage element [Term] id: EHDAA2:0000809 @@ -227425,7 +229377,7 @@ is_a: UBERON:0006253 ! embryonic intraretinal space [Term] id: EHDAA2:0000890 -is_a: UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0006254 ! ischial cartilage element [Term] id: EHDAA2:0000891 @@ -227457,7 +229409,7 @@ is_a: UBERON:0001849 ! membranous labyrinth [Term] id: EHDAA2:0000903 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: EHDAA2:0000904 @@ -227791,7 +229743,7 @@ is_a: UBERON:0006074 ! lumbar region of vertebral column [Term] id: EHDAA2:0001038 -is_a: UBERON:0013509 ! lumbar vertebra cartilage condensation +is_a: UBERON:0013509 ! lumbar vertebra cartilage element [Term] id: EHDAA2:0001040 @@ -228363,7 +230315,7 @@ is_a: UBERON:0006271 ! orbital fissure [Term] id: EHDAA2:0001329 -is_a: UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0005687 ! orbitosphenoid cartilage element [Term] id: EHDAA2:0001331 @@ -228371,7 +230323,7 @@ is_a: UBERON:0006272 ! oronasal cavity [Term] id: EHDAA2:0001333 -is_a: UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0010351 ! otic capsule cartilage element [Term] id: EHDAA2:0001335 @@ -228796,7 +230748,7 @@ is_a: UBERON:0006284 ! early prosencephalic vesicle [Term] id: EHDAA2:0001573 -is_a: UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0010718 ! pubic cartilage element [Term] id: EHDAA2:0001574 @@ -228836,7 +230788,7 @@ is_a: UBERON:0001492 ! radial nerve [Term] id: EHDAA2:0001585 -is_a: UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0006286 ! radius cartilage element [Term] id: EHDAA2:0001586 @@ -229032,7 +230984,7 @@ is_a: UBERON:0005590 ! rhombomere 8 roof plate [Term] id: EHDAA2:0001716 -is_a: UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0006288 ! rib cartilage element [Term] id: EHDAA2:0001717 @@ -229164,7 +231116,7 @@ is_a: UBERON:0006075 ! sacral region of vertebral column [Term] id: EHDAA2:0001773 -is_a: UBERON:0010745 ! sacral vertebra cartilage condensation +is_a: UBERON:0010745 ! sacral vertebra cartilage element [Term] id: EHDAA2:0001774 @@ -229180,7 +231132,7 @@ is_a: UBERON:0001373 ! sartorius muscle [Term] id: EHDAA2:0001777 -is_a: UBERON:0006290 ! scapula cartilage condensation +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: EHDAA2:0001778 @@ -229290,7 +231242,7 @@ is_a: UBERON:0004874 ! somatopleure [Term] id: EHDAA2:0001888 -is_a: UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0009193 ! sphenoid cartilage element [Term] id: EHDAA2:0001889 @@ -229518,7 +231470,7 @@ is_a: UBERON:0002533 ! tail bud [Term] id: EHDAA2:0001977 -is_a: UBERON:0010541 ! tarsus cartilage condensation +is_a: UBERON:0010541 ! tarsus cartilage element [Term] id: EHDAA2:0001978 @@ -229599,7 +231551,7 @@ is_a: UBERON:0014477 ! thoracic skeleton [Term] id: EHDAA2:0002014 -is_a: UBERON:0013507 ! thoracic vertebra cartilage condensation +is_a: UBERON:0013507 ! thoracic vertebra cartilage element [Term] id: EHDAA2:0002017 @@ -229855,7 +231807,7 @@ is_a: UBERON:0006305 ! tunica vasculosa lentis [Term] id: EHDAA2:0002098 -is_a: UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: EHDAA2:0002099 @@ -230583,7 +232535,7 @@ is_a: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation [Term] id: EHDAA2:0003450 -is_a: UBERON:0010733 ! alisphenoid cartilage condensation +is_a: UBERON:0010733 ! alisphenoid cartilage element [Term] id: EHDAA2:0003454 @@ -231886,6 +233838,10 @@ is_a: UBERON:0005591 ! diencephalon lateral wall id: EHDAA:1979 is_a: UBERON:0003301 ! roof plate of diencephalon +[Term] +id: EHDAA:1983 +is_a: UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: EHDAA:1993 is_a: UBERON:0009676 ! early telencephalic vesicle @@ -232082,6 +234038,10 @@ is_a: UBERON:0003309 ! floor plate of diencephalon id: EHDAA:2657 is_a: UBERON:0003301 ! roof plate of diencephalon +[Term] +id: EHDAA:2661 +is_a: UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: EHDAA:2671 is_a: UBERON:0009676 ! early telencephalic vesicle @@ -232395,6 +234355,10 @@ is_a: UBERON:0003308 ! floor plate of telencephalon id: EHDAA:350 is_a: UBERON:0000076 ! external ectoderm +[Term] +id: EHDAA:3500 +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere + [Term] id: EHDAA:3502 is_a: UBERON:0002285 ! telencephalic ventricle @@ -232865,6 +234829,10 @@ is_a: UBERON:0000007 ! pituitary gland id: EHDAA:4479 is_a: UBERON:0006250 ! infundibular recess of 3rd ventricle +[Term] +id: EHDAA:4498 +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere + [Term] id: EHDAA:450 is_a: UBERON:0003906 ! cardiac jelly @@ -232927,7 +234895,7 @@ is_a: UBERON:0001849 ! membranous labyrinth [Term] id: EHDAA:4704 -is_a: UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0010351 ! otic capsule cartilage element [Term] id: EHDAA:4706 @@ -233876,7 +235844,7 @@ is_a: UBERON:0003822 ! forelimb stylopod [Term] id: EHDAA:6240 -is_a: UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: EHDAA:6242 @@ -234173,7 +236141,7 @@ is_a: UBERON:0001951 ! epithelium of nasopharynx [Term] id: EHDAA:7141 -is_a: UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: EHDAA:7149 @@ -234185,11 +236153,11 @@ is_a: UBERON:0006255 ! ischial pre-cartilage condensation [Term] id: EHDAA:7267 -is_a: UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0006286 ! radius cartilage element [Term] id: EHDAA:7269 -is_a: UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: EHDAA:7327 @@ -234713,7 +236681,7 @@ is_a: UBERON:0001497 ! muscle of pelvic girdle [Term] id: EHDAA:8347 -is_a: UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0006288 ! rib cartilage element [Term] id: EHDAA:8355 @@ -234729,7 +236697,7 @@ is_a: UBERON:0006227 ! ethmoid bone primordium [Term] id: EHDAA:8368 -is_a: UBERON:0006290 ! scapula cartilage condensation +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: EHDAA:844 @@ -234753,7 +236721,7 @@ is_a: UBERON:0006292 ! shoulder joint primordium [Term] id: EHDAA:8544 -is_a: UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: EHDAA:8570 @@ -235218,7 +237186,7 @@ is_a: UBERON:0006231 ! facial bone primordium [Term] id: EHDAA:9554 -is_a: UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0005687 ! orbitosphenoid cartilage element [Term] id: EHDAA:956 @@ -235242,7 +237210,7 @@ is_a: UBERON:0006247 ! iliac pre-cartilage condensation [Term] id: EHDAA:9570 -is_a: UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0006254 ! ischial cartilage element [Term] id: EHDAA:9572 @@ -236828,7 +238796,7 @@ is_a: UBERON:0006250 ! infundibular recess of 3rd ventricle [Term] id: EMAPA:16649 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: EMAPA:16650 @@ -237481,7 +239449,7 @@ is_a: UBERON:0003309 ! floor plate of diencephalon [Term] id: EMAPA:16904 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: EMAPA:16905 @@ -239287,7 +241255,7 @@ is_a: UBERON:0003246 ! epithelium of endolymphatic sac [Term] id: EMAPA:17596 -is_a: UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0010351 ! otic capsule cartilage element [Term] id: EMAPA:17597 @@ -239495,7 +241463,7 @@ is_a: UBERON:0010744 ! sacral vertebra pre-cartilage condensation [Term] id: EMAPA:17678 -is_a: UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0006288 ! rib cartilage element [Term] id: EMAPA:17680 @@ -239567,7 +241535,7 @@ is_a: UBERON:0006224 ! elbow joint primordium [Term] id: EMAPA:17711 -is_a: UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0010848 ! radius-ulna cartilage element [Term] id: EMAPA:17712 @@ -239575,7 +241543,7 @@ is_a: UBERON:0006292 ! shoulder joint primordium [Term] id: EMAPA:17713 -is_a: UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: EMAPA:17714 @@ -239675,7 +241643,7 @@ is_a: UBERON:0006256 ! knee joint primordium [Term] id: EMAPA:17742 -is_a: UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0010129 ! femur cartilage element [Term] id: EMAPA:17744 @@ -240418,7 +242386,7 @@ is_a: UBERON:0002242 ! nucleus pulposus [Term] id: EMAPA:18009 -is_a: UBERON:0010745 ! sacral vertebra cartilage condensation +is_a: UBERON:0010745 ! sacral vertebra cartilage element [Term] id: EMAPA:18010 @@ -240543,11 +242511,11 @@ is_a: UBERON:0001517 ! skin of elbow [Term] id: EMAPA:18054 -is_a: UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0006286 ! radius cartilage element [Term] id: EMAPA:18055 -is_a: UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: EMAPA:18056 @@ -240564,91 +242532,91 @@ is_a: UBERON:0004263 ! upper arm skin [Term] id: EMAPA:18065 -is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +is_a: UBERON:0010570 ! manual digit 1 metacarpus cartilage element [Term] id: EMAPA:18066 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element [Term] id: EMAPA:18070 -is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +is_a: UBERON:0010571 ! manual digit 2 metacarpus cartilage element [Term] id: EMAPA:18071 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element [Term] id: EMAPA:18075 -is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +is_a: UBERON:0010572 ! manual digit 3 metacarpus cartilage element [Term] id: EMAPA:18076 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element [Term] id: EMAPA:18080 -is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +is_a: UBERON:0010573 ! manual digit 4 metacarpus cartilage element [Term] id: EMAPA:18081 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element [Term] id: EMAPA:18085 -is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +is_a: UBERON:0010574 ! manual digit 5 metacarpus cartilage element [Term] id: EMAPA:18086 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element [Term] id: EMAPA:18102 -is_a: UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: EMAPA:18106 -is_a: UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +is_a: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element [Term] id: EMAPA:18107 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element [Term] id: EMAPA:18111 -is_a: UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +is_a: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element [Term] id: EMAPA:18112 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element [Term] id: EMAPA:18116 -is_a: UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +is_a: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element [Term] id: EMAPA:18117 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element [Term] id: EMAPA:18121 -is_a: UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +is_a: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element [Term] id: EMAPA:18122 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element [Term] id: EMAPA:18126 -is_a: UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +is_a: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element [Term] id: EMAPA:18127 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element [Term] id: EMAPA:18143 -is_a: UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0010842 ! calcaneum cartilage element [Term] id: EMAPA:18148 @@ -240660,11 +242628,11 @@ is_a: UBERON:0001510 ! skin of knee [Term] id: EMAPA:18154 -is_a: UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0010851 ! fibula cartilage element [Term] id: EMAPA:18155 -is_a: UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0010849 ! tibia cartilage element [Term] id: EMAPA:18156 @@ -240860,15 +242828,15 @@ is_a: UBERON:0003727 ! intercostal nerve [Term] id: EMAPA:18228 -is_a: UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0007374 ! incus cartilage element [Term] id: EMAPA:18229 -is_a: UBERON:0010054 ! malleus cartilage condensation +is_a: UBERON:0010054 ! malleus cartilage element [Term] id: EMAPA:18230 -is_a: UBERON:0010055 ! stapes cartilage condensation +is_a: UBERON:0010055 ! stapes cartilage element [Term] id: EMAPA:18231 @@ -241161,7 +243129,7 @@ is_a: UBERON:0001094 ! sacral vertebra [Term] id: EMAPA:18337 -is_a: UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: EMAPA:18338 @@ -241169,7 +243137,7 @@ is_a: UBERON:0009194 ! basisphenoid cartilage condenstion [Term] id: EMAPA:18339 -is_a: UBERON:0010752 ! exoccipital cartilage condensation +is_a: UBERON:0010752 ! exoccipital cartilage element [Term] id: EMAPA:18340 @@ -241177,15 +243145,15 @@ is_a: UBERON:0001677 ! sphenoid bone [Term] id: EMAPA:18341 -is_a: UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0011162 ! supraoccipital cartilage element [Term] id: EMAPA:18342 -is_a: UBERON:0010843 ! clavicle cartilage condensation +is_a: UBERON:0010843 ! clavicle cartilage element [Term] id: EMAPA:18343 -is_a: UBERON:0006290 ! scapula cartilage condensation +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: EMAPA:18344 @@ -241201,7 +243169,7 @@ is_a: UBERON:0001269 ! acetabular part of hip bone [Term] id: EMAPA:18347 -is_a: UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0010714 ! iliac cartilage element [Term] id: EMAPA:18348 @@ -241571,15 +243539,15 @@ is_a: UBERON:0003362 ! epithelium of endolymphatic duct [Term] id: EMAPA:18583 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: EMAPA:18584 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: EMAPA:18585 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: EMAPA:18586 @@ -242988,7 +244956,7 @@ is_a: UBERON:0003676 ! patellar ligament [Term] id: EMAPA:19140 -is_a: UBERON:0012080 ! patella cartilage condensation +is_a: UBERON:0012080 ! patella cartilage element [Term] id: EMAPA:19141 @@ -244383,7 +246351,7 @@ is_a: UBERON:0006285 ! pubic pre-cartilage condensation [Term] id: EMAPA:26930 -is_a: UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0006254 ! ischial cartilage element [Term] id: EMAPA:26937 @@ -245642,7 +247610,7 @@ is_a: UBERON:0003248 ! epithelium of footplate [Term] id: EMAPA:32658 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element [Term] id: EMAPA:32659 @@ -245674,7 +247642,7 @@ is_a: UBERON:0003549 ! brain pia mater [Term] id: EMAPA:32669 -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element [Term] id: EMAPA:32670 @@ -245805,7 +247773,7 @@ is_a: UBERON:0010700 ! phalanx pre-cartilage condensation [Term] id: EMAPA:32721 -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element [Term] id: EMAPA:32722 @@ -246124,7 +248092,7 @@ is_a: UBERON:0002439 ! myenteric nerve plexus [Term] id: EMAPA:32849 -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element [Term] id: EMAPA:32850 @@ -246272,7 +248240,7 @@ is_a: UBERON:0005255 ! pedal digit mesenchyme [Term] id: EMAPA:32948 -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element [Term] id: EMAPA:32950 @@ -246280,7 +248248,7 @@ is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation [Term] id: EMAPA:32951 -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element [Term] id: EMAPA:32952 @@ -254061,7 +256029,7 @@ is_a: UBERON:0013774 ! diaphysis of metatarsal bone [Term] id: FMA:33923 -is_a: UBERON:0000313 ! tibial cartilage +is_a: UBERON:0000313 ! tibial cartilage tissue [Term] id: FMA:34830 @@ -256554,15 +258522,15 @@ is_a: UBERON:0001686 ! auditory ossicle [Term] id: FMA:52751 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: FMA:52752 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: FMA:52753 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: FMA:52760 @@ -259402,7 +261370,7 @@ is_a: UBERON:0003029 ! stria terminalis [Term] id: FMA:61975 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere [Term] id: FMA:61976 @@ -270342,15 +272310,15 @@ is_a: UBERON:0001352 ! external acoustic meatus [Term] id: GAID:866 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: GAID:867 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: GAID:868 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: GAID:869 @@ -275706,15 +277674,15 @@ is_a: UBERON:0001858 ! posterior semicircular duct [Term] id: MA:0001215 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: MA:0001216 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: MA:0001217 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: MA:0001218 @@ -285736,15 +287704,15 @@ is_a: UBERON:0001756 ! middle ear [Term] id: MESH:A09.246.397.247.362 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: MESH:A09.246.397.247.524 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: MESH:A09.246.397.247.806 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: MESH:A09.246.397.873 @@ -293246,7 +295214,7 @@ is_a: UBERON:0013201 ! olfactory pathway [Term] id: NeuroNames:208 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube [Term] id: NeuroNames:2085 @@ -293418,6 +295386,10 @@ is_a: UBERON:0004683 ! parasubiculum id: NeuroNames:231 is_a: UBERON:0001875 ! globus pallidus +[Term] +id: NeuroNames:2311 +is_a: UBERON:0014951 ! proisocortex + [Term] id: NeuroNames:2315 is_a: UBERON:0014736 ! periallocortex @@ -296454,7 +298426,7 @@ is_a: UBERON:0001143 ! hepatic vein [Term] id: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA @@ -304454,7 +306426,7 @@ is_a: UBERON:0001333 ! male urethra [Term] id: SCTID:264090005 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: SCTID:264091009 @@ -304494,7 +306466,7 @@ is_a: UBERON:0003715 ! splanchnic nerve [Term] id: SCTID:264199009 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: SCTID:264228001 @@ -304730,7 +306702,7 @@ is_a: UBERON:0000322 ! cerebral lobe [Term] id: SCTID:272649008 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: SCTID:272650008 @@ -308943,7 +310915,7 @@ is_a: UBERON:0013149 ! hindbrain vesicle [Term] id: SCTID:361483008 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere [Term] id: SCTID:361485001 @@ -316638,7 +318610,7 @@ is_a: UBERON:0011079 ! angular bone [Term] id: TAO:0001670 -is_a: UBERON:0011002 ! articular cartilage condensation +is_a: UBERON:0011002 ! articular cartilage element [Term] id: TAO:0001673 @@ -319162,7 +321134,7 @@ is_a: UBERON:0001098 ! incisor tooth [Term] id: UMLS:C0021181 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: UMLS:C0021445 @@ -319366,7 +321338,7 @@ is_a: UBERON:0002182 ! main bronchus [Term] id: UMLS:C0024631 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: UMLS:C0024670 @@ -320234,7 +322206,7 @@ is_a: UBERON:0001599 ! stapedius muscle [Term] id: UMLS:C0038152 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: UMLS:C0038291 @@ -331113,7 +333085,7 @@ is_a: UBERON:0005876 ! undifferentiated genital tubercle [Term] id: VHOG:0000584 -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element [Term] id: VHOG:0000592 @@ -331401,19 +333373,19 @@ is_a: UBERON:0005364 ! superior vagus X ganglion [Term] id: VHOG:0000688 -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone is_a: UBERON:0011606 ! hyomandibular bone is_a: UBERON:0011607 ! hyomandibular cartilage is_a: UBERON:0011608 ! hyomandibular element [Term] id: VHOG:0000689 -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone is_a: UBERON:0006597 ! quadrate bone [Term] id: VHOG:0000690 -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone is_a: UBERON:0004744 ! articular/anguloarticular [Term] @@ -332636,7 +334608,7 @@ is_a: UBERON:0003842 ! neural tube lumen [Term] id: VHOG:0001120 -is_a: UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0006245 ! humerus cartilage element [Term] id: VHOG:0001121 @@ -332644,23 +334616,23 @@ is_a: UBERON:0006263 ! Meckel's cartilage pre-cartilage condensation [Term] id: VHOG:0001122 -is_a: UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0006288 ! rib cartilage element [Term] id: VHOG:0001123 -is_a: UBERON:0006213 ! carpus cartilage condensation +is_a: UBERON:0006213 ! carpus cartilage element [Term] id: VHOG:0001124 -is_a: UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0006209 ! basioccipital cartilage element [Term] id: VHOG:0001125 -is_a: UBERON:0006290 ! scapula cartilage condensation +is_a: UBERON:0006290 ! scapula cartilage element [Term] id: VHOG:0001126 -is_a: UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0010714 ! iliac cartilage element [Term] id: VHOG:0001127 @@ -332779,7 +334751,7 @@ is_a: UBERON:0002228 ! rib [Term] id: VHOG:0001155 -is_a: UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0006306 ! ulna cartilage element [Term] id: VHOG:0001156 @@ -333339,7 +335311,7 @@ is_a: UBERON:0001679 ! ethmoid bone [Term] id: VHOG:0001318 -is_a: UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0006286 ! radius cartilage element [Term] id: VHOG:0001319 @@ -333835,7 +335807,8 @@ is_a: UBERON:0005446 ! foramen rotundum [Term] id: VHOG:0001547 -is_a: UBERON:0005078 ! lamina terminalis of forebrain vesicle +is_a: UBERON:0005078 ! lamina terminalis of neural tube +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere [Term] id: VHOG:0001548 @@ -339195,6 +341168,10 @@ is_a: UBERON:0006065 ! hemal arch id: Wikipedia:Haemal_nodes is_a: UBERON:0013119 ! haemal node +[Term] +id: Wikipedia:Haematopoiesis +is_a: UBERON:0002390 ! hematopoietic system + [Term] id: Wikipedia:Hair is_a: UBERON:0001037 ! strand of hair @@ -339291,10 +341268,6 @@ is_a: UBERON:0008813 ! helicotrema id: Wikipedia:Helix is_a: UBERON:0002488 ! helix -[Term] -id: Wikipedia:Hematopoietic_system -is_a: UBERON:0002390 ! hematopoietic system - [Term] id: Wikipedia:Hemiazygos_vein is_a: UBERON:0006663 ! hemiazygos vein @@ -339419,6 +341392,10 @@ is_a: UBERON:0011270 ! dorsal trunk id: Wikipedia:Human_mandible is_a: UBERON:0001684 ! mandible +[Term] +id: Wikipedia:Human_rib_cage +is_a: UBERON:0003252 ! thoracic rib cage + [Term] id: Wikipedia:Humeroradial_joint is_a: UBERON:0011111 ! humeroradial joint @@ -339606,7 +341583,7 @@ is_a: UBERON:0001098 ! incisor tooth [Term] id: Wikipedia:Incus -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: Wikipedia:Index_finger @@ -340314,6 +342291,11 @@ is_a: UBERON:0000957 ! lamina id: Wikipedia:Lamina_propria is_a: UBERON:0000030 ! lamina propria +[Term] +id: Wikipedia:Lamina_terminalis +is_a: UBERON:0005078 ! lamina terminalis of neural tube +is_a: UBERON:0015117 ! lamina terminalis of cerebral hemisphere + [Term] id: Wikipedia:Lancelet#Physical_features is_a: UBERON:0012473 ! oral cirrus @@ -340939,7 +342921,7 @@ is_a: UBERON:0001333 ! male urethra [Term] id: Wikipedia:Malleus -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: Wikipedia:Malpighian_tubule @@ -344688,7 +346670,7 @@ is_a: UBERON:0001599 ! stapedius muscle [Term] id: Wikipedia:Stapes -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: Wikipedia:Star-nosed_mole @@ -349191,6 +351173,10 @@ is_a: UBERON:0002691 ! ventral tegmental area id: XAO:0004301 is_a: UBERON:0014912 ! thalamic eminence +[Term] +id: XAO:0004305 +is_a: UBERON:0009848 ! zona limitans intrathalamica + [Term] id: XAO:0004325 is_a: UBERON:0004164 ! branchiomeric muscle @@ -354944,7 +356930,7 @@ is_a: UBERON:0000464 ! anatomical space [Term] id: ZFA:0001644 -is_a: UBERON:0011002 ! articular cartilage condensation +is_a: UBERON:0011002 ! articular cartilage element [Term] id: ZFA:0001645 @@ -361303,7 +363289,7 @@ is_a: UBERON:0003011 ! facial motor nucleus [Term] id: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone is_a: UBERON:0005355 ! malleus neck [Term] @@ -362919,7 +364905,7 @@ is_a: UBERON:0001391 ! popliteus muscle [Term] id: http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: http://upload.wikimedia.org/wikipedia/commons/c/c2/Biceps_brachii.png @@ -363421,7 +365407,7 @@ is_a: UBERON:0002161 ! gracile nucleus [Term] id: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg @@ -365291,7 +367277,7 @@ is_a: UBERON:0003011 ! facial motor nucleus [Term] id: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone is_a: UBERON:0005355 ! malleus neck [Term] @@ -366505,7 +368491,7 @@ is_a: UBERON:0001391 ! popliteus muscle [Term] id: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png @@ -366885,7 +368871,7 @@ is_a: UBERON:0002161 ! gracile nucleus [Term] id: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg @@ -370992,7 +372978,7 @@ is_a: UBERON:0001098 ! incisor tooth [Term] id: ncithesaurus:Incus -is_a: UBERON:0001688 ! incus +is_a: UBERON:0001688 ! incus bone [Term] id: ncithesaurus:Indifferent_Gonad @@ -372204,7 +374190,7 @@ is_a: UBERON:0001333 ! male urethra [Term] id: ncithesaurus:Malleus -is_a: UBERON:0001689 ! malleus +is_a: UBERON:0001689 ! malleus bone [Term] id: ncithesaurus:Mamillary_Body @@ -375200,7 +377186,7 @@ is_a: UBERON:0001599 ! stapedius muscle [Term] id: ncithesaurus:Stapes -is_a: UBERON:0001687 ! stapes +is_a: UBERON:0001687 ! stapes bone [Term] id: ncithesaurus:Stellate_Reticulum diff --git a/uberon.obo b/uberon.obo index dad497f595..c4edea9e19 100644 --- a/uberon.obo +++ b/uberon.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: releases/2013-12-15 -date: 15:12:2013 12:26 +data-version: releases/2014-01-11 +date: 11:01:2014 11:00 saved-by: cjm subsetdef: cumbo "CUMBO" subsetdef: cyclostome_subset "cyclostome structures" @@ -162,7 +162,7 @@ property_value: doap-GitRepository https://github.com/cmungall/uberon/ xsd:anyUR property_value: doap-mailing-list https://lists.sourceforge.net/lists/listinfo/obo-anatomy xsd:anyURI property_value: doap-SVNRepository https://obo.svn.sourceforge.net/svnroot/obo/uberon/ xsd:anyURI property_value: foaf-homepage http://uberon.org xsd:anyURI -owl-axioms: 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)))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nEquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n) treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292 treat-xrefs-as-reverse-genus-differentia: ABA part_of NCBITaxon:10088 treat-xrefs-as-reverse-genus-differentia: BSA part_of NCBITaxon:7712 @@ -4144,10 +4144,10 @@ relationship: part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 -name: tibial cartilage +name: tibial cartilage tissue def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource] -comment: TODO -synonym: "cartilage of tibia" EXACT [FMA:33923] +comment: This class represents a portion of cartilage tissue located in the tibia, *not* the cartilaginous condensation of an emrbyonic tibia +synonym: "cartilage of tibia" RELATED [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0004270 ! lower leg connective tissue @@ -6274,7 +6274,7 @@ relationship: part_of UBERON:0001870 ! frontal cortex [Term] id: UBERON:0000453 name: decidua basalis -def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MGI:anna] +def: "area of uterine endometrium found between the implanted chorionic vesicle and the myometrium." [https://sourceforge.net/p/obo/mammalian-phenotype-requests/1599, MP:0012529] comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity subset: efo_slim synonym: "basal decidua" RELATED [MGI:anna] @@ -7300,7 +7300,7 @@ relationship: part_of UBERON:0001073 ! ileocecal junction [Term] id: UBERON:0000642 name: suspensory ligament of duodenum -def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum] +def: "A thin muscle connecting the junction between the duodenum, jejunum, and duodenojejunal flexure to connective tissue surrounding the superior mesenteric artery and coeliac artery " [Wikipedia:Suspensory_muscle_of_duodenum] comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament. synonym: "ligament of Treitz" EXACT [FMA:20509] synonym: "muscle of Treitz" EXACT [FMA:20509] @@ -7840,6 +7840,7 @@ is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm relationship: part_of UBERON:0007026 ! primitive gut property_value: external_definition "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string +property_value: external_definition "the primordial mouth region of the developing head, initially a midline ectodermal depression between the forebrain bulge (cranially) and the heart bulge (caudally) and between the maxillary and mandibular components of the first pharyngeal arch; the stomodeum is separated from the anterior end of the foregut by the buccopharyngeal membrane; the mouth is developed partly from the stomodeum, and partly from the floor of the anterior portion of the foregut; the lips, teeth, and gums are formed from the walls of the stomodeum, but the tongue is developed in the floor of the pharynx" xsd:string property_value: has_relational_adjective "stomodeal" xsd:string [Term] @@ -9012,7 +9013,11 @@ xref: Wikipedia:Humerus xref: XAO:0003210 is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004250 ! upper arm bone -relationship: develops_from UBERON:0006245 ! humerus cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006245 ! humerus cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0003822 ! forelimb stylopod relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton @@ -9114,7 +9119,11 @@ xref: UMLS:C0040184 {source="ncithesaurus:Tibia"} xref: Wikipedia:Tibia is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010849 ! tibia cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010849 ! tibia cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string @@ -9174,7 +9183,11 @@ xref: XAO:0003214 is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003826 ! upper leg bone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010129 ! femur cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010129 ! femur cartilage element relationship: part_of UBERON:0000376 ! hindlimb stylopod relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: proximally_connected_to UBERON:0007832 ! pelvic girdle skeleton @@ -12311,10 +12324,10 @@ xref: XAO:0003078 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone -is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0015010 ! sacral vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column -relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation +relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage element relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] @@ -12591,7 +12604,7 @@ is_a: UBERON:0002495 ! long bone is_a: UBERON:0003461 ! shoulder bone is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010905 ! clavicle bone primordium -relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage condensation +relationship: has_developmental_contribution_from UBERON:0010843 ! clavicle cartilage element relationship: in_lateral_side_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string @@ -17142,7 +17155,11 @@ xref: Wikipedia:Ilium_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010714 ! iliac cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010714 ! iliac cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -17175,7 +17192,11 @@ xref: Wikipedia:Ischium is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -17204,7 +17225,11 @@ xref: Wikipedia:Pubis_(bone) is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007830 ! pelvic girdle bone/zone is_a: UBERON:0008202 ! bone of hip region -relationship: develops_from UBERON:0010718 ! pubic cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -20739,7 +20764,11 @@ xref: VSAO:0005012 xref: Wikipedia:Radius_(bone) is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006286 ! radius cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006286 ! radius cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: preaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string @@ -20768,7 +20797,11 @@ xref: VSAO:0005013 xref: Wikipedia:Ulna is_a: UBERON:0003466 ! forelimb zeugopod bone is_a: UBERON:0003607 ! forelimb long bone -relationship: develops_from UBERON:0006306 ! ulna cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006306 ! ulna cartilage element relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string @@ -20909,6 +20942,12 @@ xref: UMLS:C0223736 {source="ncithesaurus:Trapezial_Bone"} xref: VSAO:0005043 xref: Wikipedia:Trapezium_(bone) is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015085 ! distal carpal bone 1 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001431 @@ -20938,6 +20977,12 @@ xref: UMLS:C0223741 {source="ncithesaurus:Trapezoid_Bone"} xref: VSAO:0005044 xref: Wikipedia:Trapezoid_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015088 ! distal carpal bone 2 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string property_value: external_definition "The trapezoid bone (lesser multangular bone) is a carpal bone in tetrapods, including humans. It is the smallest bone in the distal row. It may be known by its wedge-shaped form, the broad end of the wedge constituting the dorsal, the narrow end the palmar surface; and by its having four articular facets touching each other, and separated by sharp edges. It is homologous with the 'second distal carpal' of reptiles and amphibians. The etymology derives from the Greek trapezion which means 'irregular quadrilateral,' from tra- 'four' and peza 'foot' or 'edge. ' Literally, 'a little table' from trapeza meaning 'table' and -oeides 'shaped.[Wikipedia:Trapezoid_bone]" xsd:string @@ -20969,6 +21014,12 @@ xref: UMLS:C0223733 {source="ncithesaurus:Capitate_Bone"} xref: VSAO:0005045 xref: Wikipedia:Capitate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015091 ! distal carpal bone 3 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -21000,6 +21051,12 @@ xref: UMLS:C0560737 {source="ncithesaurus:Hamate_Bone"} xref: VSAO:0005046 xref: Wikipedia:Hamate_bone is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015094 ! distal carpal bone 4 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string [Term] @@ -21060,9 +21117,10 @@ xref: UMLS:C0007285 {source="ncithesaurus:Carpal_Bone"} xref: Wikipedia:Carpus is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005897 ! manus bone +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004452 ! carpal region -relationship: develops_from UBERON:0006213 ! carpus cartilage condensation +relationship: develops_from UBERON:0006213 ! carpus cartilage element relationship: part_of UBERON:0004452 ! carpal region relationship: part_of UBERON:0009880 ! carpal skeleton @@ -21097,9 +21155,10 @@ xref: Wikipedia:Phalanges_of_the_hand is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0004249 ! manual digit bone +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002389 ! manual digit -relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage condensation +relationship: develops_from UBERON:0010686 ! manual digit phalanx cartilage element relationship: part_of UBERON:0002389 ! manual digit relationship: part_of UBERON:0010688 ! skeleton of manual acropodium property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO]" xsd:string @@ -21382,7 +21441,11 @@ xref: UMLS:C0016068 {source="ncithesaurus:Fibula"} xref: Wikipedia:Fibula is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004251 ! hindlimb zeugopod bone -relationship: develops_from UBERON:0010851 ! fibula cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010851 ! fibula cartilage element relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton relationship: postaxialmost_part_of UBERON:0010720 ! hindlimb zeugopod skeleton property_value: external_definition "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string @@ -21415,9 +21478,10 @@ xref: SCTID:108372004 xref: UMLS:C0039316 {source="ncithesaurus:Tarsal_Bone"} is_a: UBERON:0003656 ! mesopodium bone is_a: UBERON:0005899 ! pes bone +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004454 ! tarsal region -relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation +relationship: develops_from UBERON:0010541 ! tarsus cartilage element relationship: part_of UBERON:0004454 ! tarsal region relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -21443,6 +21507,7 @@ xref: Wikipedia:Metatarsal_bone is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012359 ! pedal digitopodium bone +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0000983 ! metatarsus region relationship: connected_to UBERON:0001447 ! tarsal bone @@ -21480,9 +21545,10 @@ xref: Wikipedia:Phalanges_of_the_foot is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! hindlimb long bone is_a: UBERON:0004248 ! pedal digit bone +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002387 ! pes -relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage condensation +relationship: develops_from UBERON:0010685 ! pedal digit phalanx cartilage element relationship: part_of UBERON:0001466 ! pedal digit relationship: part_of UBERON:0002387 ! pes relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium @@ -21516,7 +21582,11 @@ xref: UMLS:C0006655 {source="ncithesaurus:Calcaneum"} xref: VSAO:0005016 xref: Wikipedia:Calcaneus is_a: UBERON:0011679 ! proximal tarsal bone -relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton property_value: has_relational_adjective "calcaneal" xsd:string @@ -21588,7 +21658,13 @@ xref: UMLS:C1512869 {source="ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005052 xref: Wikipedia:Medial_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015103 ! distal tarsal bone 1 cartilage relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string @@ -21626,7 +21702,13 @@ xref: UMLS:C1513292 {source="ncithesaurus:Middle_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005053 xref: Wikipedia:Intermediate_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015106 ! distal tarsal bone 2 cartilage relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string @@ -21663,7 +21745,13 @@ xref: UMLS:C1517036 {source="ncithesaurus:External_Cuneiform_Bone_of_the_Foot"} xref: VSAO:0005054 xref: Wikipedia:Lateral_cuneiform_bone is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015109 ! distal tarsal bone 3 cartilage relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_comment "In some types, the cuneiform is found as two or three bones, in which case the more anterior ('dorsal' in dorsal/plantar terminology) is the ectocuneiform, while the more posterior or plantar bones are the mesocuneiform and entocuneiform.[Palaeos]" xsd:string property_value: external_definition "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string @@ -22403,9 +22491,12 @@ xref: MA:0002557 xref: SCTID:306715004 is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0014395 ! proximal mesopodial bone -intersection_of: UBERON:0001435 ! carpal bone -intersection_of: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton -relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015079 ! proximal carpal cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton [Term] id: UBERON:0001481 @@ -22417,6 +22508,11 @@ xref: FMA:33303 xref: MA:0002558 xref: SCTID:306716003 is_a: UBERON:0001435 ! carpal bone +is_a: UBERON:0015068 ! distal carpal endochondral element +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015069 ! distal carpal cartilage relationship: distally_connected_to UBERON:0002374 ! metacarpal bone relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Series of elements that articulate with the metacarpals.[AAO]" xsd:string @@ -25271,7 +25367,7 @@ xref: Wikipedia:Stapedius_muscle is_a: UBERON:0001577 ! facial nerve muscle is_a: UBERON:0004113 ! muscle of auditory ossicle relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation -relationship: has_muscle_insertion UBERON:0001687 ! stapes +relationship: has_muscle_insertion UBERON:0001687 ! stapes bone relationship: innervated_by UBERON:0001647 ! facial nerve relationship: part_of UBERON:0001756 ! middle ear property_value: homologous_in NCBITaxon:7742 @@ -27407,7 +27503,11 @@ is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008193 ! pneumatized bone -relationship: develops_from UBERON:0009193 ! sphenoid bone cartilage condensation +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0009193 ! sphenoid cartilage element relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -27738,9 +27838,9 @@ property_value: homology_notes "Additional structural analysis within a phylogen [Term] id: UBERON:0001687 -name: stapes +name: stapes bone def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [doi:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes] -comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] +comment: Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x] subset: uberon_slim synonym: "columella" RELATED SENSU [Wikipedia:Stapes] synonym: "columella auris" RELATED [AAO:0000580] @@ -27771,8 +27871,12 @@ xref: Wikipedia:Stapes is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004368 ! Reichert's cartilage -relationship: develops_from UBERON:0010055 ! stapes cartilage condensation +relationship: develops_from UBERON:0010055 ! stapes cartilage element relationship: evolved_from UBERON:0011606 ! hyomandibular bone relationship: homologous_to UBERON:3000580 ! stylus of pars media plectri property_value: homologous_in NCBITaxon:7742 @@ -27780,9 +27884,10 @@ property_value: homology_notes "This structure (the hyomandibular), on ontogenic [Term] id: UBERON:0001688 -name: incus +name: incus bone def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus] subset: uberon_slim +synonym: "incus" EXACT [MA:0001215] synonym: "incus bone" EXACT [] synonym: "quadrate - incus" BROAD [VHOG:0000689] xref: EMAPA:18583 @@ -27799,17 +27904,23 @@ xref: VHOG:0000689 xref: Wikipedia:Incus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone -relationship: develops_from UBERON:0007374 ! incus cartilage condensation +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0007374 ! incus cartilage element relationship: evolved_from UBERON:0006597 ! quadrate bone property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string [Term] id: UBERON:0001689 -name: malleus +name: malleus bone def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus] subset: uberon_slim +synonym: "anguloarticular - malleus" BROAD [VHOG:0000690] synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus] +synonym: "malleus" BROAD [MA:0001216] xref: EMAPA:18584 xref: FMA:52753 xref: GAID:867 @@ -27824,8 +27935,12 @@ xref: VHOG:0000690 xref: Wikipedia:Malleus is_a: UBERON:0001686 ! auditory ossicle is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0003107 ! Meckel's cartilage -relationship: develops_from UBERON:0010054 ! malleus cartilage condensation +relationship: develops_from UBERON:0010054 ! malleus cartilage element relationship: evolved_from UBERON:0004744 ! articular/anguloarticular property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string @@ -27944,8 +28059,13 @@ xref: VHOG:0001152 xref: Wikipedia:Basilar_part_of_occipital_bone xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006209 ! basioccipital cartilage element relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0005902 ! occipital region @@ -27985,9 +28105,14 @@ xref: VHOG:0001151 xref: Wikipedia:Lateral_parts_of_occipital_bone xref: ZFA:0000661 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009635 ! parachordal cartilage -relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation +relationship: develops_from UBERON:0010752 ! exoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -34051,12 +34176,10 @@ property_value: homology_notes "Classical anatomical studies subdivided the vert id: UBERON:0001897 name: dorsal plus ventral thalamus def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus] -comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex. subset: efo_slim subset: uberon_slim subset: vertebrate_core -synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954] -synonym: "Th" BROAD ABBREVIATION [PMID:23375746] +synonym: "Th" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_954, PMID:23375746] synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] synonym: "thalami" RELATED PLURAL [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] @@ -34207,11 +34330,12 @@ comment: Some sources treat the subthalamus as distinct from the thalamus, separ subset: uberon_slim subset: vertebrate_core synonym: "perithalamus" RELATED [Wikipedia:Thalamus] -synonym: "prethalamus" EXACT DEVELOPMENTAL [] +synonym: "prethalamus" RELATED DEVELOPMENTAL [Wikipedia:Thalamus] synonym: "SbTh" BROAD ABBREVIATION [NIF_GrossAnatomy:NeuroNames_abbrevSource\,NIF_GrossAnatomy\:birnlex_708] -synonym: "subthalamic region" EXACT [] -synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamic region" EXACT [FMA:62010, NIF_GrossAnatomy:birnlex_708] +synonym: "subthalamus" EXACT [NIF_GrossAnatomy:birnlex_708, Wikipedia:Thalamus] synonym: "thalamus ventralis" EXACT LATIN [NIF_GrossAnatomy:birnlex_708] +synonym: "ventral thalamus" EXACT [GO:0021539] synonym: "ventral thalamus" EXACT [MA:0000181] xref: BAMS:SbTh xref: BAMS:Ventral_thalamus @@ -34235,7 +34359,6 @@ xref: Wikipedia:Subthalamus xref: ZFA:0000458 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus -property_value: external_definition "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO][GO:0021539]." xsd:string property_value: has_relational_adjective "subthalamic" xsd:string [Term] @@ -35828,7 +35951,7 @@ synonym: "cerebral neocortex" EXACT [] synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893] synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547] synonym: "iso-cortex" RELATED [BAMS:iso-cortex] -synonym: "isocortex" EXACT [] +synonym: "isocortex" NARROW [BRAINSPAN:BRAINSPAN] synonym: "isocortex (sensu lato)" EXACT [FMA:62429] synonym: "neopallial cortex" EXACT [] synonym: "neopallium" EXACT [] @@ -43162,7 +43285,7 @@ property_value: homology_notes "There are more than 50,000 extant vertebrate spe [Term] id: UBERON:0002205 name: manubrium of sternum -def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium] +def: "The cranial most segment of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[MP,WP]." [MP:0012668, Wikipedia:Manubrium] comment: May be cartilage in some species. subset: uberon_slim synonym: "manubrium" BROAD [] @@ -43735,7 +43858,11 @@ xref: ZFA:0000538 is_a: UBERON:0002495 ! long bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: develops_from UBERON:0006288 ! rib cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0006288 ! rib cartilage element relationship: in_lateral_side_of UBERON:0014478 ! rib skeletal system relationship: part_of UBERON:0014478 ! rib skeletal system property_value: external_definition "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO]" xsd:string @@ -44821,7 +44948,7 @@ def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here.. subset: uberon_slim subset: vertebrate_core -synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery] +synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] @@ -46789,9 +46916,10 @@ xref: Wikipedia:Thoracic_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! thoracic segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column -relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage condensation +relationship: develops_from UBERON:0013507 ! thoracic vertebra cartilage element relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0006073 ! thoracic region of vertebral column @@ -47697,6 +47825,7 @@ xref: Wikipedia:Metacarpal_bone is_a: UBERON:0003607 ! forelimb long bone is_a: UBERON:0003821 ! metapodium bone is_a: UBERON:0012358 ! manual digitopodium bone +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0004453 ! metacarpus region relationship: connected_to UBERON:0001435 ! carpal bone @@ -48182,8 +48311,7 @@ property_value: external_definition "One of the fingers of the manus.[AAO]" xsd: [Term] id: UBERON:0002390 name: hematopoietic system -def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system] -comment: This class was created automatically from a combination of ontologies +def: "Anatomical system that is involved in the production of hematopoietic cells. In humans this is primarily the bone marrow, spleen, tonsils, and lymph nodes." [Wikipedia:Haematopoiesis] subset: efo_slim subset: uberon_slim subset: vertebrate_core @@ -48211,7 +48339,7 @@ xref: SCTID:362587009 xref: TAO:0005023 xref: UMLS:C0018957 {source="ncithesaurus:Hematopoietic_System"} xref: VHOG:0001624 -xref: Wikipedia:Hematopoietic_system +xref: Wikipedia:Haematopoiesis xref: XAO:0000122 xref: ZFA:0005023 is_a: UBERON:0000467 ! anatomical system @@ -48908,7 +49036,11 @@ xref: ZFA:0001189 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008001 ! irregular bone is_a: UBERON:0010913 ! vertebral element -relationship: develops_from UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element +intersection_of: UBERON:0015005 ! vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011094 ! vertebra cartilage element relationship: part_of UBERON:0001130 ! vertebral column property_value: external_definition "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string property_value: external_definition "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string @@ -48938,9 +49070,10 @@ xref: XAO:0003076 is_a: UBERON:0003458 ! neck bone is_a: UBERON:0004247 ! back bone is_a: UBERON:0004451 ! trunk or cervical vertebra +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column -relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage condensation +relationship: develops_from UBERON:0013505 ! cervical vertebra cartilage element relationship: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0006072 ! cervical region of vertebral column @@ -48966,9 +49099,10 @@ xref: Wikipedia:Lumbar_vertebrae is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0004247 ! back bone +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column -relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage condensation +relationship: develops_from UBERON:0013509 ! lumbar vertebra cartilage element relationship: part_of UBERON:0006074 ! lumbar region of vertebral column [Term] @@ -49368,9 +49502,10 @@ xref: SCTID:304149004 xref: UMLS:C0582791 {source="ncithesaurus:Bone_of_the_Extremity"} is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004375 ! bone of free limb or fin +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002101 ! limb -relationship: develops_from UBERON:0010881 ! limb bone cartilage condensation +relationship: develops_from UBERON:0010881 ! limb cartilage element relationship: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0004381 ! skeleton of limb @@ -50711,6 +50846,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbito-sphénocïde@fr" EXACT [TAO:0000253] +synonym: "orbitosphenoid bone" EXACT [UBERON:cjm] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -50724,7 +50860,11 @@ xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage element relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone @@ -51146,7 +51286,7 @@ xref: SCTID:279685009 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001687 ! stapes +relationship: part_of UBERON:0001687 ! stapes bone [Term] id: UBERON:0002497 @@ -55355,12 +55495,11 @@ relationship: part_of UBERON:0001872 ! parietal lobe id: UBERON:0002689 name: supraoptic crest def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis] -comment: AO notes: NIF has two classes here +comment: AO notes: NIF has two classes here; Editor note: consider relationship to lamina terminalis synonym: "olfactory ventricle (olfactory part of lateral ventricle)" RELATED [BAMS:OV] synonym: "organum vasculosum" RELATED [NeuroNames:383] -synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313] +synonym: "organum vasculosum lamina terminalis" EXACT LATIN [NIF_GrossAnatomy:nlx_anat_100313] synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:62315, FMA:TA] -synonym: "organum vasculosum laminae terminalis" EXACT LATIN [FMA:TA] synonym: "organum vasculosum of lamina terminalis" RELATED LATIN [NeuroNames:383] synonym: "OVLT" EXACT ABBREVIATION [] synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400] @@ -63061,7 +63200,7 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0003054 name: roof plate -def: "a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] +def: "a single row of glia at the dorsal midline of the developing neural tube along the entire anterior-posterior axis. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040] comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate subset: uberon_slim subset: vertebrate_core @@ -63071,8 +63210,10 @@ xref: AAO:0011097 xref: NeuroNames:1371 xref: TAO:0007058 xref: ZFA:0007058 -is_a: UBERON:0005423 ! developing anatomical structure -relationship: part_of UBERON:0000922 ! embryo +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue +relationship: in_dorsal_side_of UBERON:0001049 ! neural tube relationship: part_of UBERON:0001049 ! neural tube property_value: external_definition "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string @@ -63751,7 +63892,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic [Term] id: UBERON:0003079 name: floor plate -def: "A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] +def: "The specialized glial structure (non-neuronal cells) situated at the ventral midline of the embryonic neural tube; this structure spans the anteroposterior axis from the midbrain to the tail regions, separating the left and right basal plates of the developing neural tube, and serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." [GO:0021508, MGI:anna, PMID:15738958, Wikipedia:Floor_plate] comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'. subset: efo_slim subset: uberon_slim @@ -63770,11 +63911,15 @@ xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: Wikipedia:Floor_plate xref: ZFA:0000022 -is_a: UBERON:0005423 ! developing anatomical structure +is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0002328 ! notochord relationship: develops_from UBERON:0007286 ! presumptive floor plate -relationship: part_of UBERON:0000922 ! embryo -relationship: part_of UBERON:0001016 ! nervous system +relationship: in_ventral_side_of UBERON:0001049 ! neural tube +relationship: part_of UBERON:0001049 ! neural tube +property_value: dc-description " A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube." xsd:string property_value: external_definition "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string [Term] @@ -66046,9 +66191,10 @@ xref: VSAO:0000199 xref: Wikipedia:Phalanx_bones is_a: UBERON:0003606 ! limb long bone is_a: UBERON:0012357 ! digitopodium bone +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002544 ! digit -relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation +relationship: develops_from UBERON:0010701 ! phalanx cartilage element relationship: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0010543 ! acropodial skeleton property_value: has_relational_adjective "phalangeal" xsd:string @@ -66641,6 +66787,7 @@ xref: FMA:7480 xref: galen:RibCage xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png xref: SCTID:361741004 +xref: Wikipedia:Human_rib_cage xref: Wikipedia:Rib_cage is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010912 ! subdivision of skeleton @@ -67676,9 +67823,8 @@ xref: RETIRED_EHDAA2:0001106 xref: TAO:0002196 xref: VHOG:0000780 xref: ZFA:0001677 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002950 ! regional part of midbrain -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0003079 ! floor plate @@ -67707,9 +67853,8 @@ xref: EMAPA:16655 xref: TAO:0000914 xref: VHOG:0000783 xref: ZFA:0000914 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002791 ! regional part of telencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67750,9 +67895,8 @@ xref: EMAPA:16903 xref: TAO:0000871 xref: VHOG:0000782 xref: ZFA:0000871 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002784 ! regional part of diencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67780,9 +67924,8 @@ xref: EMAPA:17093 xref: EMAPA:17100 xref: EMAPA:17258 xref: VHOG:0000784 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002680 ! regional part of metencephalon -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -67816,9 +67959,8 @@ xref: EHDAA:7590 xref: EHDAA2:0001097 xref: EMAPA:17551 xref: VHOG:0000786 -is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002678 ! regional part of medulla oblongata -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate @@ -70423,9 +70565,10 @@ xref: SCTID:361370006 xref: UMLS:C0448188 {source="ncithesaurus:Bone_of_the_Lower_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010742 ! bone of pelvic complex +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002103 ! hindlimb -relationship: develops_from UBERON:0010885 ! hindlimb bone cartilage condensation +relationship: develops_from UBERON:0010885 ! hindlimb cartilage element relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0002103 ! hindlimb @@ -73725,9 +73868,10 @@ xref: ncithesaurus:Hand_Digit_1_Phalanx xref: SCTID:181975002 xref: UMLS:C1711344 {source="ncithesaurus:Hand_Digit_1_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! manual digit 1 -relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010675 ! manual digit 1 phalanx cartilage element relationship: part_of UBERON:0001463 ! manual digit 1 [Term] @@ -74106,9 +74250,10 @@ xref: ncithesaurus:Hand_Digit_2_Phalanx xref: SCTID:361783009 xref: UMLS:C1708312 {source="ncithesaurus:Hand_Digit_2_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! manual digit 2 -relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010676 ! manual digit 2 phalanx cartilage element relationship: part_of UBERON:0003622 ! manual digit 2 [Term] @@ -74150,9 +74295,10 @@ xref: ncithesaurus:Hand_Digit_3_Phalanx xref: SCTID:361785002 xref: UMLS:C1708314 {source="ncithesaurus:Hand_Digit_3_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! manual digit 3 -relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010677 ! manual digit 3 phalanx cartilage element relationship: part_of UBERON:0003623 ! manual digit 3 [Term] @@ -74194,9 +74340,10 @@ xref: ncithesaurus:Hand_Digit_4_Phalanx xref: SCTID:361787005 xref: UMLS:C1708316 {source="ncithesaurus:Hand_Digit_4_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! manual digit 4 -relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010678 ! manual digit 4 phalanx cartilage element relationship: part_of UBERON:0003624 ! manual digit 4 [Term] @@ -74241,9 +74388,10 @@ xref: ncithesaurus:Hand_Digit_5_Phalanx xref: SCTID:361789008 xref: UMLS:C1708317 {source="ncithesaurus:Hand_Digit_5_Phalanx"} is_a: UBERON:0001436 ! phalanx of manus +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! manual digit 5 -relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010679 ! manual digit 5 phalanx cartilage element relationship: part_of UBERON:0003625 ! manual digit 5 [Term] @@ -74275,9 +74423,10 @@ xref: ncithesaurus:Foot_Digit_1_Phalanx xref: SCTID:361798006 xref: UMLS:C1708080 {source="ncithesaurus:Foot_Digit_1_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! pedal digit 1 -relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation +relationship: develops_from UBERON:0010680 ! pedal digit 1 phalanx cartilage element relationship: part_of UBERON:0003631 ! pedal digit 1 [Term] @@ -74301,9 +74450,10 @@ xref: ncithesaurus:Foot_Digit_2_Phalanx xref: SCTID:361800004 xref: UMLS:C1708082 {source="ncithesaurus:Foot_Digit_2_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! pedal digit 2 -relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation +relationship: develops_from UBERON:0010681 ! pedal digit 2 phalanx cartilage element relationship: part_of UBERON:0003632 ! pedal digit 2 [Term] @@ -74327,9 +74477,10 @@ xref: ncithesaurus:Foot_Digit_3_Phalanx xref: SCTID:361802007 xref: UMLS:C1708084 {source="ncithesaurus:Foot_Digit_3_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! pedal digit 3 -relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation +relationship: develops_from UBERON:0010682 ! pedal digit 3 phalanx cartilage element relationship: part_of UBERON:0003633 ! pedal digit 3 [Term] @@ -74389,9 +74540,10 @@ xref: SCTID:181973009 xref: UMLS:C1708987 {source="ncithesaurus:Metacarpal_Bone_Digit_1"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 -relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage condensation +relationship: develops_from UBERON:0010570 ! manual digit 1 metacarpus cartilage element relationship: distally_connected_to UBERON:0004338 ! proximal phalanx of manual digit 1 property_value: external_definition "The first metacarpal bone or the metacarpal bone of the thumb is the first bone of the thumb. It is connected to the trapezium of the carpus at the first carpometacarpal joint and to the proximal thumb phalanx at the first metacarpophalangeal joint[Wikipedia:First_metacarpal_bone]." xsd:string property_value: ray_number "1" xsd:nonNegativeInteger @@ -74431,9 +74583,10 @@ xref: SCTID:263399007 xref: UMLS:C1708988 {source="ncithesaurus:Metacarpal_Bone_Digit_2"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 -relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage condensation +relationship: develops_from UBERON:0010571 ! manual digit 2 metacarpus cartilage element relationship: distally_connected_to UBERON:0004328 ! proximal phalanx of manual digit 2 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -74475,9 +74628,10 @@ xref: UMLS:C1708989 {source="ncithesaurus:Metacarpal_Bone_Digit_3"} xref: Wikipedia:Third_metacarpal_bone is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 -relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage condensation +relationship: develops_from UBERON:0010572 ! manual digit 3 metacarpus cartilage element relationship: distally_connected_to UBERON:0004329 ! proximal phalanx of manual digit 3 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO]" xsd:string property_value: external_definition "The third metacarpal bone (metacarpal bone of the middle finger) is a little smaller than the second. The dorsal aspect of its base presents on its radial side a pyramidal eminence, the styloid process, which extends upward behind the capitate; immediately distal to this is a rough surface for the attachment of the extensor carpi radialis brevis muscle. The carpal articular facet is concave behind, flat in front, and articulates with the capitate. On the radial side is a smooth, concave facet for articulation with the second metacarpal, and on the ulnar side two small oval facets for the fourth metacarpal[Wikipedia:Third_metacarpal_bone]." xsd:string @@ -74518,9 +74672,10 @@ xref: SCTID:263401001 xref: UMLS:C1708990 {source="ncithesaurus:Metacarpal_Bone_Digit_4"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 -relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage condensation +relationship: develops_from UBERON:0010573 ! manual digit 4 metacarpus cartilage element relationship: distally_connected_to UBERON:0004330 ! proximal phalanx of manual digit 4 property_value: external_definition "The fourth metacarpal bone (metacarpal bone of the ring finger) is shorter and smaller than the third. The base is small and quadrilateral; its superior surface presents two facets, a large one medially for articulation with the hamate, and a small one laterally for the capitate. On the radial side are two oval facets, for articulation with the third metacarpal; and on the ulnar side a single concave facet, for the fifth metacarpal[Wikipedia:Fourth_metacarpal_bone]." xsd:string property_value: ray_number "4" xsd:nonNegativeInteger @@ -74561,9 +74716,10 @@ xref: SCTID:263402008 xref: UMLS:C1711224 {source="ncithesaurus:Metacarpal_Bone_Digit_5"} is_a: UBERON:0002374 ! metacarpal bone is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 -relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage condensation +relationship: develops_from UBERON:0010574 ! manual digit 5 metacarpus cartilage element relationship: distally_connected_to UBERON:0004331 ! proximal phalanx of manual digit 5 property_value: external_definition "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO]" xsd:string property_value: external_definition "The fifth metacarpal bone (metacarpal bone of the little finger or pinky finger) is the most lateral metacarpal[Wikipedia:Fifth_metacarpal_bone]." xsd:string @@ -74592,9 +74748,10 @@ xref: SCTID:182121005 xref: UMLS:C1708999 {source="ncithesaurus:Metatarsal_Bone_Digit_1"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013581 ! metapodium bone 1 +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 -relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage condensation +relationship: develops_from UBERON:0010557 ! pedal digit 1 metatarsal cartilage element relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of pedal digit 1 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO]" xsd:string property_value: external_definition "The first metatarsal bone is the bone in the body of the foot just behind the big toe. It is remarkable for its great thickness, and is the shortest of the metatarsal bones. The body is strong, and of well-marked prismoid form. The base presents, as a rule, no articular facets on its sides, but occasionally on the lateral side there is an oval facet, by which it articulates with the second metatarsal. Its proximal articular surface is of large size and kidney-shaped; its circumference is grooved, for the tarsometatarsal ligaments, and medially gives insertion to part of the tendon of the Tibialis anterior; its plantar angle presents a rough oval prominence for the insertion of the tendon of the Peronæus longus. The head is large; on its plantar surface are two grooved facets, on which glide sesamoid bones; the facets are separated by a smooth elevation[Wikipedia:First_metatarsal_bone]." xsd:string @@ -74621,9 +74778,10 @@ xref: SCTID:182128004 xref: UMLS:C1709000 {source="ncithesaurus:Metatarsal_Bone_Digit_2"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013582 ! metapodium bone 2 +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 -relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage condensation +relationship: develops_from UBERON:0010558 ! pedal digit 2 metatarsal cartilage element relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of pedal digit 2 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO]" xsd:string property_value: ray_number "2" xsd:nonNegativeInteger @@ -74651,9 +74809,10 @@ xref: UMLS:C1709001 {source="ncithesaurus:Metatarsal_Bone_Digit_3"} xref: Wikipedia:Third_metatarsal_bone is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013583 ! metapodium bone 3 +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 -relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage condensation +relationship: develops_from UBERON:0010559 ! pedal digit 3 metatarsal cartilage element relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of pedal digit 3 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO]" xsd:string property_value: external_definition "The third metatarsal bone articulates proximally, by means of a triangular smooth surface, with the third cuneiform; medially, by two facets, with the second metatarsal; and laterally, by a single facet, with the fourth metatarsal. This last facet is situated at the dorsal angle of the base[Wikipedia:Third_metatarsal_bone]." xsd:string @@ -74680,9 +74839,10 @@ xref: SCTID:182139001 xref: UMLS:C1709002 {source="ncithesaurus:Metatarsal_Bone_Digit_4"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013584 ! metapodium bone 4 +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 -relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage condensation +relationship: develops_from UBERON:0010560 ! pedal digit 4 metatarsal cartilage element relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of pedal digit 4 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO]" xsd:string property_value: external_definition "The fourth metatarsal bone is smaller in size than the third; its base presents an oblique quadrilateral surface for articulation with the cuboid; a smooth facet on the medial side, divided by a ridge into an anterior portion for articulation with the third metatarsal, and a posterior portion for articulation with the third cuneiform; on the lateral side a single facet, for articulation with the fifth metatarsal[Wikipedia:Fourth_metatarsal_bone]." xsd:string @@ -74709,9 +74869,10 @@ xref: SCTID:182144008 xref: UMLS:C1709003 {source="ncithesaurus:Metatarsal_Bone_Digit_5"} is_a: UBERON:0001448 ! metatarsal bone is_a: UBERON:0013585 ! metapodium bone 5 +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 -relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage condensation +relationship: develops_from UBERON:0010561 ! pedal digit 5 metatarsal cartilage element relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of pedal digit 5 property_value: external_definition "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO]" xsd:string property_value: external_definition "The fifth metatarsal bone is recognized by a rough eminence, the tuberosity, on the lateral side of its base. The base articulates behind, by a triangular surface cut obliquely in a transverse direction, with the cuboid; and medially, with the fourth metatarsal. On the medial part of its dorsal surface is inserted the tendon of the Peronæus tertius and on the dorsal surface of the tuberosity that of the Peronæus brevis. A strong band of the plantar aponeurosis connects the projecting part of the tuberosity with the lateral process of the tuberosity of the calcaneus. The plantar surface of the base is grooved for the tendon of the Abductor digiti quinti, and gives origin to the Flexor digiti quinti brevis. The base of the metatarsal is often injured and a particularly notorious fracture is the Jones fracture. When the tuberosity is broken, it is called a pseudo-Jones fracture or a dancer's fracture. This is a common fracture of the fifth metatarsal. Stress fractures are common in the fifth metatarsal among athletes[Wikipedia:Fifth_metatarsal_bone]." xsd:string @@ -77248,9 +77409,10 @@ xref: ncithesaurus:Foot_Digit_4_Phalanx xref: SCTID:361804008 xref: UMLS:C1708086 {source="ncithesaurus:Foot_Digit_4_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! pedal digit 4 -relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation +relationship: develops_from UBERON:0010683 ! pedal digit 4 phalanx cartilage element relationship: part_of UBERON:0003634 ! pedal digit 4 [Term] @@ -77276,9 +77438,10 @@ xref: ncithesaurus:Foot_Digit_5_Phalanx xref: SCTID:361806005 xref: UMLS:C1708088 {source="ncithesaurus:Foot_Digit_5_Phalanx"} is_a: UBERON:0001449 ! phalanx of pes +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! pedal digit 5 -relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation +relationship: develops_from UBERON:0010684 ! pedal digit 5 phalanx cartilage element relationship: part_of UBERON:0003635 ! pedal digit 5 [Term] @@ -78683,7 +78846,6 @@ relationship: part_of UBERON:0001768 ! uvea id: UBERON:0003957 name: Bruch's membrane def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane] -comment: TODO - see also subset: vertebrate_core synonym: "basal lamina of choroid" EXACT [FMA:58438] synonym: "Bruch membrane" EXACT [MESH:A09.371.894.223.250] @@ -78838,7 +79000,7 @@ synonym: "gonium" EXACT [MP:0008380] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0003967 @@ -87946,7 +88108,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone [Term] id: UBERON:0004547 name: decidua capsularis -def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm] +def: "The layer of uterine endometrium overlying the implanted chorionic vesicle and facing the uterine cavity" [MP:0012530] xref: FMA:86478 xref: MA:0002906 xref: ncithesaurus:Decidua_Capsularis @@ -88223,8 +88385,9 @@ name: rib 1 def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the serratus ventralis. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa I" EXACT LATIN [] synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib] -synonym: "Costa prima (I)" EXACT [FMA:7597] +synonym: "costa prima (I)" EXACT [FMA:7597] synonym: "first rib" EXACT [FMA:7597] xref: FMA:7597 xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png @@ -88243,8 +88406,9 @@ name: rib 2 def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the serratus ventralis; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa II" EXACT LATIN [] synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib] -synonym: "Costa secunda (II)" EXACT [FMA:7620] +synonym: "costa secunda (II)" EXACT [FMA:7620] synonym: "second rib" EXACT [FMA:7620] xref: FMA:7620 xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray125.png @@ -88262,6 +88426,7 @@ id: UBERON:0004603 name: rib 3 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa III" EXACT LATIN [] synonym: "third rib" EXACT [FMA:7638] xref: FMA:7638 xref: MA:0001403 @@ -88276,6 +88441,7 @@ id: UBERON:0004604 name: rib 4 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IV" EXACT LATIN [] synonym: "fourth rib" EXACT [FMA:7749] xref: FMA:7749 xref: MA:0001404 @@ -88290,6 +88456,7 @@ id: UBERON:0004605 name: rib 5 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa V" EXACT LATIN [] synonym: "fifth rib" EXACT [FMA:7776] xref: FMA:7776 xref: MA:0001405 @@ -88304,6 +88471,7 @@ id: UBERON:0004606 name: rib 6 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VI" EXACT LATIN [] synonym: "sixth rib" EXACT [FMA:8147] xref: FMA:8147 xref: MA:0001406 @@ -88318,6 +88486,7 @@ id: UBERON:0004607 name: rib 7 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VII" EXACT LATIN [] synonym: "seventh rib" EXACT [FMA:7830] xref: FMA:7830 xref: MA:0001407 @@ -88332,6 +88501,7 @@ id: UBERON:0004608 name: rib 9 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa IX" EXACT LATIN [] synonym: "ninth rib" EXACT [FMA:8337] xref: FMA:8337 xref: MA:0001409 @@ -88347,6 +88517,7 @@ name: rib 10 def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa X" EXACT LATIN [] synonym: "tenth rib" EXACT [FMA:8418] xref: FMA:8418 xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray126.png @@ -88365,6 +88536,7 @@ name: rib 11 def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XI" EXACT LATIN [] synonym: "eleventh rib" EXACT [FMA:8499] xref: FMA:8499 xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Gray127.png @@ -88382,6 +88554,7 @@ name: rib 12 def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib] comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa XII" EXACT LATIN [] synonym: "twelfth rib" EXACT [FMA:8515] xref: FMA:8515 xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png @@ -88832,10 +89005,14 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: SCTID:361515007 xref: VHOG:0000854 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010363 ! endochondral element -relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation +is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0003462 ! facial bone +is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010351 ! otic capsule cartilage element relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -89974,7 +90151,7 @@ relationship: part_of UBERON:0003504 ! respiratory system blood vessel [Term] id: UBERON:0004703 name: dorsal thalamus -comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 +comment: TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659 subset: vertebrate_core synonym: "dorsal thalamus" EXACT [FMA:62007] synonym: "dorsal thalamus (Anthoney)" EXACT [FMA:62007] @@ -89993,6 +90170,7 @@ xref: TAO:0000653 xref: ZFA:0000653 is_a: UBERON:0002784 ! regional part of diencephalon relationship: part_of UBERON:0001897 ! dorsal plus ventral thalamus +property_value: present_in_taxon NCBITaxon:7776 [Term] id: UBERON:0004704 @@ -90849,8 +91027,8 @@ xref: Wikipedia:Articular xref: ZFA:0000467 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0008907 ! dermal bone -relationship: develops_from UBERON:0011002 ! articular cartilage condensation -relationship: homologous_to UBERON:0001689 ! malleus +relationship: develops_from UBERON:0011002 ! articular cartilage element +relationship: homologous_to UBERON:0001689 ! malleus bone property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string property_value: external_comment "The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO]" xsd:string @@ -90926,8 +91104,13 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone -relationship: develops_from UBERON:0011162 ! supraoccipital cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0011162 ! supraoccipital cartilage element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium relationship: part_of UBERON:0005902 ! occipital region @@ -96240,8 +96423,7 @@ relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005070 name: anterior neuropore -def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506] -comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube +def: "The neuropore at the anterior (rostral) end of the neural tube." [UBERON:cjm] synonym: "cephalic neuropore" EXACT [] synonym: "cranial neuropore" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "rostral neuropore" EXACT [EMAPA:16523] @@ -96251,13 +96433,16 @@ xref: RETIRED_EHDAA2:0001768 xref: SCTID:361478000 xref: VHOG:0000768 is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_anterior_side_of UBERON:0001049 ! neural tube +relationship: in_anterior_side_of UBERON:0001049 ! neural tube property_value: external_definition "Anterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0005071 name: posterior neuropore -def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507] +def: "The neuropore at the posterior (caudal) end of the neural tube." [UBERON:cjm] synonym: "caudal neuropore" EXACT [EMAPA:16526] xref: EHDAA:900 xref: EHDAA2:0000676 @@ -96266,6 +96451,9 @@ xref: RETIRED_EHDAA2:0000223 xref: SCTID:361479008 xref: VHOG:0000769 is_a: UBERON:0005077 ! neuropore +intersection_of: UBERON:0005077 ! neuropore +intersection_of: in_posterior_side_of UBERON:0001049 ! neural tube +relationship: in_posterior_side_of UBERON:0001049 ! neural tube property_value: external_definition "Posterior site of neural tube closure. [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Vertebrates:_Comparative_Anatomy, p.378, see_Kardong_KV][VHOG]" xsd:string property_value: homologous_in NCBITaxon:7742 @@ -96311,29 +96499,33 @@ relationship: adjacent_to UBERON:0002240 ! spinal cord [Term] id: UBERON:0005077 name: neuropore -def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995] +def: "A temporary opening leading from the central canal of the embryonic neural tube to the exterior." [MGI:anna] xref: SCTID:360408007 +is_a: UBERON:0000161 ! orifice is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0004121 ! ectoderm-derived structure +union_of: UBERON:0005070 ! anterior neuropore +union_of: UBERON:0005071 ! posterior neuropore +relationship: connects UBERON:0003842 ! neural tube lumen relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0005078 -name: lamina terminalis of forebrain vesicle -def: "The median portion of the wall of the fore-brain vesicle consists of a thin, the lamina terminalis, which stretches from the interventricular foramen to the recess at the base of the optic stalk and contains the organum vasculosum of the lamina terminalis, which regulates the osmolarity of the blood. This is the rostral end (tip) of the neural tube in the early weeks of development." [Wikipedia:Lamina_terminalis] -synonym: "lamina terminalis" EXACT [FMA:61975] -xref: BAMS:LT +name: lamina terminalis of neural tube +def: "The anterior-most (rostral) portion of the wall of the neural tube, formed by closure of the anterior neuropore; the median strip of the anterior wall of the prosencephalon, which persists in a relatively unchanged state as the cerebral hemispheres grow out forward beyond the original anterior end of the prosencephalon." [MGI:anna] +synonym: "lamina terminalis" BROAD [] xref: BAMS:LTer xref: BM:LT +xref: EHDAA:1983 +xref: EHDAA:2661 xref: EHDAA2:0000903 xref: EMAPA:16649 xref: EMAPA:16904 -xref: FMA:61975 xref: NeuroNames:208 -xref: SCTID:361483008 xref: VHOG:0001547 -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: part_of UBERON:0006222 ! future diencephalon property_value: homologous_in NCBITaxon:7742 @@ -99574,7 +99766,7 @@ xref: MA:0002987 xref: SCTID:368926004 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005343 @@ -99771,7 +99963,7 @@ name: malleus processus brevis def: "the projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005355 @@ -99787,7 +99979,7 @@ xref: SCTID:368927008 xref: Wikipedia:Neck_of_malleus is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0005356 @@ -100835,8 +101027,10 @@ synonym: "auditory capsule" EXACT [ZFA:0001500] xref: EMAPA:18803 xref: TAO:0001500 xref: ZFA:0001500 -is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004637 ! otic capsule +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010351 ! otic capsule cartilage element +is_a: UBERON:0014387 ! mesenchyme derived from neural crest property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string property_value: external_definition "Bilaterally paired cartilage encasing the semicircular canals of the inner ear.[TAO]" xsd:string @@ -101289,7 +101483,7 @@ relationship: supplies UBERON:0002240 ! spinal cord [Term] id: UBERON:0005432 name: aortic sac -def: "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD]." [http://medical-dictionary.thefreedictionary.com/aortic+sac] +def: "The dilated structure that is lined by endothelial cells and located at the arterial pole of the heart just above (distal to) the truncus arteriosus in mammalian embryos; it is the primordial vascular channel from which the aortic arches (and eventually the dorsal aortae) arise; the aortic sac is homologous to the ventral aorta of gill-bearing vertebrates" [MP:0012510] xref: EHDAA:9826 xref: EHDAA2:0004145 xref: FMA:71008 @@ -101302,6 +101496,7 @@ is_a: UBERON:0003498 ! heart blood vessel is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004363 ! aortic arch relationship: part_of UBERON:0004145 ! outflow tract +property_value: external_definition "the merged ventral aortae of the embryo which supplies blood to the aortic arches[TMD][http://medical-dictionary.thefreedictionary.com/aortic+sac]." xsd:string [Term] id: UBERON:0005433 @@ -104536,15 +104731,20 @@ relationship: part_of UBERON:0001153 ! caecum [Term] id: UBERON:0005687 -name: orbitosphenoid cartilage condensation -synonym: "sphenoid lesser wing cartilage condensation" RELATED [EHDAA2:0001329] +name: orbitosphenoid cartilage element +synonym: "sphenoid lesser wing cartilage element" RELATED [EHDAA2:0001329] xref: EHDAA:9554 xref: EHDAA2:0001329 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0005688 @@ -104983,8 +105183,7 @@ xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 is_a: UBERON:0001948 ! regional part of spinal cord -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002240 ! spinal cord intersection_of: part_of UBERON:0003079 ! floor plate @@ -106141,7 +106340,7 @@ is_a: UBERON:0005856 ! developing mesenchymal condensation [Term] id: UBERON:0005866 name: pre-cartilage condensation -def: "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." [http://dictionary.reference.com/browse/precartilage] +def: "A delimited region of dense mesenchyme within looser mesenchyme whose cells are committed to become chondroblasts." [AEO:0000150, AEO:JB] synonym: "pre-chondrogenic condensation" EXACT [] synonym: "precartilage condensation" EXACT [] synonym: "precartilagenous condensation" EXACT [] @@ -106151,6 +106350,7 @@ xref: EHDAA2:0003150 xref: EMAPA:32736 is_a: UBERON:0005856 ! developing mesenchymal condensation relationship: part_of UBERON:0004288 ! skeleton +property_value: external_definition "A closely packed aggregation of mesenchymal cells just prior to their differentiation into embryonic cartilage." xsd:string [Term] id: UBERON:0005867 @@ -108180,9 +108380,10 @@ xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: SCTID:361774004 xref: UMLS:C0223616 {source="ncithesaurus:Coccygeal_Vertebra"} is_a: UBERON:0001095 ! caudal vertebra +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0001095 ! caudal vertebra intersection_of: part_of UBERON:0001350 ! coccyx -relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage condensation +relationship: develops_from UBERON:0013517 ! coccygeal vertebra cartilage element relationship: part_of UBERON:0001350 ! coccyx [Term] @@ -109671,13 +109872,19 @@ property_value: homology_notes "Mammals have a third type of tympanic ear. An ex [Term] id: UBERON:0006209 -name: basioccipital cartilage condensation +name: basioccipital cartilage element subset: emapa_ehdaa2 xref: EHDAA:7141 xref: EHDAA2:0000164 xref: EMAPA:18337 xref: VHOG:0001124 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009197 ! basioccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone property_value: homologous_in NCBITaxon:7742 @@ -109694,9 +109901,12 @@ is_a: UBERON:0003104 ! mesenchyme [Term] id: UBERON:0006211 name: buccopharyngeal membrane -def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane] +def: "The thin bilaminar membrane derived from the prechordal plate that is devoid of mesoderm and formed by the apposition of the stomodeal ectoderm with the foregut endoderm; after the embryonic head fold has evolved it lies at the caudal limit of the stomodeum, forming a septum between the primitive mouth and pharynx; the membrane eventually disappears, and thus a communication is established between the mouth and the future pharynx." [MP:0012521] subset: emapa_ehdaa2 +synonym: "oral membrane" RELATED [MP:0012521] +synonym: "oral plate" RELATED [MP:0012521] synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane] +synonym: "pharyngeal membrane" RELATED INCONSISTENT [MP:0012521] xref: EHDAA:536 xref: EHDAA2:0000189 xref: EMAPA:16259 @@ -109733,14 +109943,16 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006213 -name: carpus cartilage condensation +name: carpus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a carpal bone." [OBOL:automatic] xref: EHDAA:8544 xref: EHDAA2:0000221 xref: EMAPA:18102 xref: VHOG:0001123 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0010377 ! mesenchyme from somatopleure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001435 ! carpal bone relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation @@ -109755,8 +109967,11 @@ xref: EHDAA:6324 xref: EHDAA2:0000222 xref: EMAPA:17724 xref: VHOG:0000955 +is_a: UBERON:0003319 ! mesenchyme of carpal region is_a: UBERON:0009523 ! mesenchyme of handplate +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015049 ! carpus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001435 ! carpal bone relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region @@ -109960,6 +110175,10 @@ xref: EHDAA2:0000457 xref: EMAPA:18014 xref: VHOG:0000963 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -110031,7 +110250,13 @@ subset: emapa_ehdaa2 xref: EHDAA2:0000508 xref: EMAPA:17502 xref: VHOG:0000951 +is_a: UBERON:0005254 ! upper leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur property_value: homologous_in NCBITaxon:7742 @@ -110191,14 +110416,19 @@ relationship: part_of UBERON:0003320 ! mesenchyme of hip [Term] id: UBERON:0006245 -name: humerus cartilage condensation +name: humerus cartilage element subset: emapa_ehdaa2 xref: EHDAA:6240 xref: EHDAA2:0000787 xref: EMAPA:17713 xref: VHOG:0001120 is_a: UBERON:0005258 ! upper arm mesenchyme -is_a: UBERON:0010883 ! forelimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006246 ! humerus pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton @@ -110214,7 +110444,12 @@ xref: EHDAA2:0000788 xref: EMAPA:17427 xref: VHOG:0000950 is_a: UBERON:0005258 ! upper arm mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015053 ! humerus endochondral element +intersection_of: UBERON:0015053 ! humerus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000976 ! humerus relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0005258 ! upper arm mesenchyme @@ -110228,8 +110463,11 @@ xref: EHDAA:9568 xref: EHDAA2:0000809 xref: EMAPA:18029 xref: VHOG:0000964 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -110244,7 +110482,10 @@ xref: EHDAA2:0000813 xref: EMAPA:17825 xref: VHOG:0000957 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0010042 ! 1st arch mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -110319,13 +110560,17 @@ property_value: homology_notes " (...) an essentially similar sequence of events [Term] id: UBERON:0006254 -name: ischial cartilage condensation +name: ischial cartilage element subset: emapa_ehdaa2 xref: EHDAA:9570 xref: EHDAA2:0000890 xref: EMAPA:26930 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006255 ! ischial pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -110337,8 +110582,11 @@ xref: EHDAA:7153 xref: EHDAA2:0000891 xref: EMAPA:18348 xref: VHOG:0000962 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015056 ! ischial endochondral element +intersection_of: UBERON:0015056 ! ischial endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 @@ -110446,6 +110694,10 @@ xref: EMAPA:17826 xref: VHOG:0000958 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003107 ! Meckel's cartilage property_value: homologous_in NCBITaxon:7742 @@ -110838,25 +111090,28 @@ xref: EHDAA2:0001574 xref: EMAPA:18349 xref: EMAPA:26928 xref: VHOG:0000965 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006286 -name: radius cartilage condensation +name: radius cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a radius bone." [OBOL:automatic] xref: EHDAA:7267 xref: EHDAA2:0001585 xref: EMAPA:18054 xref: VHOG:0001318 -is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0010883 ! forelimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015001 ! radius endochondral element +intersection_of: UBERON:0015001 ! radius endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010846 ! radius pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: homologous_in NCBITaxon:7742 @@ -110870,20 +111125,30 @@ xref: EHDAA2:0001587 xref: EMAPA:17420 xref: VHOG:0000949 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006288 -name: rib cartilage condensation +name: rib cartilage element subset: emapa_ehdaa2 xref: EHDAA:8347 xref: EHDAA2:0001716 xref: EMAPA:17678 xref: VHOG:0001122 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006289 ! rib pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -110898,7 +111163,12 @@ xref: EHDAA2:0001717 xref: EMAPA:17397 xref: VHOG:0000681 is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015019 ! rib endochondral element +intersection_of: UBERON:0015019 ! rib endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0003089 ! sclerotome relationship: has_potential_to_develop_into UBERON:0002228 ! rib relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -110906,7 +111176,7 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0006290 -name: scapula cartilage condensation +name: scapula cartilage element subset: emapa_ehdaa2 xref: EHDAA:8368 xref: EHDAA2:0001777 @@ -110914,6 +111184,11 @@ xref: EMAPA:18343 xref: VHOG:0001125 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006291 ! scapula pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo @@ -110931,6 +111206,10 @@ xref: EMAPA:18027 xref: VHOG:0000960 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006210 ! body-wall mesenchyme relationship: has_potential_to_develop_into UBERON:0006849 ! scapula relationship: part_of UBERON:0000922 ! embryo @@ -110986,6 +111265,10 @@ xref: VHOG:0000956 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001686 ! auditory ossicle property_value: homologous_in NCBITaxon:7742 @@ -111114,19 +111397,19 @@ property_value: homology_notes "Soon after it forms, the mammalian lens becomes [Term] id: UBERON:0006306 -name: ulna cartilage condensation +name: ulna cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a ulna." [OBOL:automatic] xref: EHDAA:7269 xref: EHDAA2:0002098 xref: EMAPA:18055 xref: VHOG:0001155 -is_a: UBERON:0003327 ! mesenchyme of forearm is_a: UBERON:0005423 ! developing anatomical structure -is_a: UBERON:0010883 ! forelimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015003 ! ulna endochondral element +intersection_of: UBERON:0015003 ! ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010847 ! ulna pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton property_value: homologous_in NCBITaxon:7742 @@ -115205,7 +115488,11 @@ synonym: "radius-ulna" EXACT [XAO:0003209] xref: AAO:0000901 xref: XAO:0003209 is_a: UBERON:0003466 ! forelimb zeugopod bone -relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010848 ! radius-ulna cartilage element relationship: has_fused_element UBERON:0001423 ! radius bone relationship: has_fused_element UBERON:0001424 ! ulna relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -115349,8 +115636,12 @@ xref: Wikipedia:Greater_wing_of_sphenoid_bone is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 ! neurocranium bone +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0009637 ! alisphenoid ossification center -relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation +relationship: develops_from UBERON:0010733 ! alisphenoid cartilage element relationship: in_lateral_side_of UBERON:0002517 ! basicranium relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0008895 ! splanchnocranium @@ -115372,7 +115663,7 @@ xref: MA:0002985 xref: SCTID:264091009 is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0010313 ! neural crest-derived structure -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone relationship: surrounded_by UBERON:0002364 ! tympanic membrane [Term] @@ -116294,6 +116585,7 @@ xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png xref: Wikipedia:Exoccipital_condyle is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -116346,7 +116638,7 @@ property_value: external_definition "Also known as loose connective tissue. A pl [Term] id: UBERON:0006820 name: body of sternum -def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MGI:anna, Wikipedia:Body_of_sternum] +def: "The middle and longest portion of the sternum, lying between the manubrium superiorly and the xiphoid process inferiorly; it considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [MP:0012512, Wikipedia:Body_of_sternum] comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939] synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum] synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum] @@ -116734,8 +117026,12 @@ xref: Wikipedia:Scapula xref: ZFA:0000583 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone +is_a: UBERON:0015057 ! scapula endochondral element +intersection_of: UBERON:0015057 ! scapula endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: develops_from UBERON:0006290 ! scapula cartilage condensation +relationship: develops_from UBERON:0006290 ! scapula cartilage element relationship: distally_connected_to UBERON:0007272 ! pectoral appendage skeleton relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string @@ -121101,10 +121397,14 @@ is_a: UBERON:0007367 ! surface of tongue [Term] id: UBERON:0007374 -name: incus cartilage condensation +name: incus cartilage element xref: EMAPA:18228 is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015017 ! incus endochondral element +intersection_of: UBERON:0015017 ! incus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation [Term] @@ -122660,7 +122960,7 @@ is_a: UBERON:0001489 ! manus joint is_a: UBERON:0006658 ! interphalangeal joint intersection_of: UBERON:0006658 ! interphalangeal joint intersection_of: part_of UBERON:0002389 ! manual digit -relationship: connects UBERON:0001436 ! phalanx of manus +relationship: connects UBERON:0001436 {maxCardinality="2", minCardinality="2"} ! phalanx of manus relationship: part_of UBERON:0002389 ! manual digit [Term] @@ -124090,7 +124390,11 @@ name: tibiotarsus def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their pes bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus] xref: Wikipedia:Tibiotarsus is_a: UBERON:0003464 ! hindlimb bone -relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010902 ! tibiotarsus cartilage element relationship: has_fused_element UBERON:0000979 ! tibia relationship: has_fused_element UBERON:0001447 ! tarsal bone relationship: part_of UBERON:0001441 ! hindlimb skeleton @@ -124102,7 +124406,11 @@ def: "The tarsometatarsus is a bone that is found in the lower leg of certain te comment: Taxon notes: found in birds[VSAO] xref: Wikipedia:Tarsometatarsus is_a: UBERON:0005899 ! pes bone -relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilage element relationship: has_fused_element UBERON:0001448 ! metatarsal bone relationship: has_fused_element UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0001445 ! skeleton of pes @@ -124375,8 +124683,7 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:0008254 name: styliform cartilage def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element relationship: homologous_to UBERON:0001429 ! pisiform relationship: part_of UBERON:0001440 ! forelimb skeleton @@ -128708,9 +129015,10 @@ xref: SCTID:368532003 xref: UMLS:C0003793 {source="ncithesaurus:Bone_of_the_Upper_Extremity"} is_a: UBERON:0002428 ! limb bone is_a: UBERON:0010741 ! bone of pectoral complex +is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0002428 ! limb bone intersection_of: part_of UBERON:0002102 ! forelimb -relationship: develops_from UBERON:0010883 ! forelimb bone cartilage condensation +relationship: develops_from UBERON:0010883 ! forelimb cartilage element relationship: part_of UBERON:0001440 ! forelimb skeleton relationship: part_of UBERON:0002102 ! forelimb @@ -128894,7 +129202,7 @@ xref: SCTID:181772008 xref: UMLS:C0015641 {source="ncithesaurus:Fascia"} xref: Wikipedia:Fascia is_a: UBERON:0007846 ! dense regular connective tissue -relationship: connects UBERON:0001630 {maxCardinality="2", minCardinality="2"} ! muscle organ +relationship: connects UBERON:0001630 ! muscle organ relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] @@ -130166,6 +130474,12 @@ xref: EMAPA:18015 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -130184,11 +130498,18 @@ relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0009193 -name: sphenoid bone cartilage condensation +name: sphenoid cartilage element +synonym: "sphenoid bone cartilage condensation" EXACT [EHDAA2:0001888] xref: EHDAA2:0001888 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015060 ! sphenoid endochondral element +intersection_of: UBERON:0015060 ! sphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation relationship: part_of UBERON:0002241 ! chondrocranium @@ -130202,8 +130523,9 @@ xref: VHOG:0001338 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme relationship: develops_from UBERON:0009192 ! basisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element property_value: homologous_in NCBITaxon:7742 [Term] @@ -130235,6 +130557,10 @@ xref: EHDAA2:0000165 xref: EMAPA:18012 xref: VHOG:0000959 is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015048 ! basioccipital endochondral element +intersection_of: UBERON:0015048 ! basioccipital endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:0002241 ! chondrocranium property_value: homologous_in NCBITaxon:7742 @@ -130355,13 +130681,14 @@ relationship: part_of UBERON:0001716 ! secondary palate [Term] id: UBERON:0009210 name: pharyngeal membrane -def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] +def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the pharyngeal clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html] synonym: "pharyngeal membrane" EXACT [] xref: ncithesaurus:Pharyngeal_Membrane xref: UMLS:C1519040 {source="ncithesaurus:Pharyngeal_Membrane"} is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0000924 ! ectoderm relationship: has_part UBERON:0000925 ! endoderm +relationship: part_of UBERON:0008814 ! pharyngeal system [Term] id: UBERON:0009213 @@ -131876,7 +132203,7 @@ is_a: UBERON:0010355 ! ossification center [Term] id: UBERON:0009638 name: orbitosphenoid ossification center -comment: merge with sphenoid lesser wing cartilage condensation? +comment: merge with sphenoid lesser wing cartilage element? synonym: "orbitosphenoid center" RELATED [] is_a: UBERON:0010355 ! ossification center @@ -133066,6 +133393,7 @@ id: UBERON:0009840 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] synonym: "caudal rhombic lip" EXACT [https://orcid.org/0000-0002-6601-2165] +synonym: "lower (caudal) rhombic lip" EXACT [] xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0002616 ! regional part of brain @@ -133079,6 +133407,7 @@ synonym: "cerebellar anlage" EXACT [ZFA:0001442] synonym: "presumptive cerebellum" EXACT [ZFA:0001442] synonym: "rhombomere 01 cerebellum primordium" RELATED [EHDAA2:0000229] synonym: "rostral rhombic lip" EXACT [DHB:URL] +synonym: "upper (rostral) rhombic lip" EXACT [] xref: EHDAA2:0000229 xref: TAO:0001442 xref: ZFA:0001442 @@ -133168,9 +133497,14 @@ relationship: part_of UBERON:0004902 ! urogenital sinus epithelium id: UBERON:0009848 name: zona limitans intrathalamica def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica] -synonym: "ZLI" EXACT [GO:0022006] +comment: Editor note: Modeling this as a line may not be correct - see http://code.google.com/p/caro2/issues/detail?id=17 +synonym: "MDO" RELATED ABBREVIATION [https://en.wikipedia.org/wiki/Thalamus] +synonym: "mid-diencephalic organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] +synonym: "ZLI" EXACT ABBREVIATION [GO:0022006] +synonym: "ZLI organizer" RELATED [https://en.wikipedia.org/wiki/Thalamus] xref: TAO:0001344 xref: Wikipedia:Zona_limitans_intrathalamica +xref: XAO:0004305 xref: ZFA:0001344 is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line @@ -135160,21 +135494,28 @@ is_a: UBERON:0000062 ! organ [Term] id: UBERON:0010054 -name: malleus cartilage condensation +name: malleus cartilage element xref: EMAPA:18229 is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015018 ! malleus endochondral element +intersection_of: UBERON:0015018 ! malleus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation [Term] id: UBERON:0010055 -name: stapes cartilage condensation +name: stapes cartilage element comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks. xref: EMAPA:18230 -is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest -is_a: UBERON:0009506 ! associated mesenchyme of middle ear +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011607 ! hyomandibular cartilage +is_a: UBERON:0015016 ! stapes endochondral element +intersection_of: UBERON:0015016 ! stapes endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation relationship: part_of UBERON:0001686 ! auditory ossicle @@ -135406,7 +135747,7 @@ is_a: UBERON:0000483 ! epithelium id: UBERON:0010078 name: optic choroid vascular plexus alt_id: ZFA:0005228 -comment: Editor notes: Consider merging with capillary layer. See https://sourceforge.net/tracker/?group_id=76834&atid=1127722. Consider choriocapillaris complex +comment: Editor notes: Consider merging with capillary layer. Consider choriocapillaris complex synonym: "capillary lamina of choroid" RELATED [XAO:0004176] synonym: "choriocapillaris" RELATED [XAO:0004176] synonym: "choroid vascular plexus" RELATED [] @@ -135421,7 +135762,7 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0005629 ! vascular plexus relationship: part_of UBERON:0001776 ! optic choroid relationship: part_of UBERON:0002200 ! vasculature of head -property_value: external_definition "A plexus of capillaries that is visible anteromedial to the eye. The choroid is the vascular layer of the eye, containing connective tissue, and lying between the retina and the sclera. The choroid provides oxygen and nourishment to the outer layers of the retina. Along with the ciliary body and iris, the choroid forms the uveal tract[XAO:0004176]." xsd:string +property_value: external_definition "A plexus of capillaries that is located anteromedial to the eye. It is a capillary layer in the choroid. It is in contact with the basal surface of the retinal pigmented epithelium and supplies the photoreceptors with oxygen and nutrients. The fused basement membrane of this capillary layer and the pigmented epithelium is called Bruch's membrane.[XAO:0004176]." xsd:string property_value: external_definition "Is an ocular vasculature that develops adjacent to the pigment epithelium of the eye. The optic choroid vascular plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. The plexus supplies blood to the retina[ZFA:0005094]." xsd:string property_value: taxon_notes "The choroid of teleosts is a connective tissue layer rich in blood vessels, and one or two choroidal glands." xsd:string @@ -135595,12 +135936,17 @@ relationship: part_of UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0010129 -name: femur cartilage condensation +name: femur cartilage element comment: TODO - request EHDAA2 synonym: "femoral cartilage condensation" EXACT [EMAPA:17742] xref: EMAPA:17742 is_a: UBERON:0005254 ! upper leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015052 ! femur endochondral element +intersection_of: UBERON:0015052 ! femur endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0000981 ! femur relationship: part_of UBERON:0005254 ! upper leg mesenchyme @@ -137919,24 +138265,27 @@ id: UBERON:0010349 name: otic capsule pre-cartilage condensation synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region [Term] id: UBERON:0010351 -name: otic capsule cartilage condensation +name: otic capsule cartilage element xref: EHDAA:4704 xref: EHDAA2:0001333 xref: EMAPA:17596 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015020 ! otic capsule endochondral element +intersection_of: UBERON:0015020 ! otic capsule endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: adjacent_to UBERON:0001694 ! petrous part of temporal bone +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010349 ! otic capsule pre-cartilage condensation relationship: part_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0003110 ! otic region @@ -139301,7 +139650,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsal b xref: EHDAA2:0001978 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region @@ -139312,12 +139663,13 @@ relationship: part_of UBERON:0004454 ! tarsal region [Term] id: UBERON:0010541 -name: tarsus cartilage condensation +name: tarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsal bone." [OBOL:automatic] xref: EHDAA2:0001977 is_a: UBERON:0003328 ! mesenchyme of footplate is_a: UBERON:0010695 ! mesenchyme of tarsal region -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001447 ! tarsal bone relationship: develops_from UBERON:0010540 ! tarsus pre-cartilage condensation @@ -139376,9 +139728,10 @@ xref: VSAO:0005026 xref: Wikipedia:Metacarpus xref: XAO:0003208 is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: subdivision_of UBERON:0004453 ! metacarpus region -relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage condensation +relationship: develops_from UBERON:0010699 ! manual digit metacarpus cartilage element relationship: part_of UBERON:0004453 ! metacarpus region relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium relationship: proximally_connected_to UBERON:0009880 ! carpal skeleton @@ -139409,9 +139762,10 @@ xref: VSAO:0005027 xref: Wikipedia:Metatarsus xref: XAO:0003212 is_a: UBERON:0010546 ! metapodial skeleton +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: subdivision_of UBERON:0000983 ! metatarsus region -relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage condensation +relationship: develops_from UBERON:0010697 ! pedal digit metatarsal cartilage element relationship: part_of UBERON:0000983 ! metatarsus region relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium relationship: proximally_connected_to UBERON:0009879 ! tarsal skeleton @@ -139453,6 +139807,7 @@ xref: EHDAA2:0002040 xref: EMAPA:17725 is_a: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -139468,6 +139823,7 @@ xref: EHDAA2:0002045 xref: EMAPA:17727 is_a: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -139483,6 +139839,7 @@ xref: EHDAA2:0002050 xref: EMAPA:17729 is_a: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -139498,6 +139855,7 @@ xref: EHDAA2:0002055 xref: EMAPA:17731 is_a: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -139513,81 +139871,87 @@ xref: EHDAA2:0002060 xref: EMAPA:17733 is_a: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element intersection_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010557 -name: pedal digit 1 metatarsal cartilage condensation +name: pedal digit 1 metatarsal cartilage element def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 metatarsal cartilage condensation" EXACT [OBOL:accepted] synonym: "toe 1 metatarsal cartilage condensation" EXACT [] xref: EMAPA:18106 -is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015037 ! pedal digit 1 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010558 -name: pedal digit 2 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 2 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] +synonym: "foot digit 2 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 2 metatarsal cartilage condensation" EXACT [] +synonym: "toe 2 metatarsal cartilage element" EXACT [] xref: EMAPA:18111 -is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015038 ! pedal digit 2 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010559 -name: pedal digit 3 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 3 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] +synonym: "foot digit 3 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 3 metatarsal cartilage condensation" EXACT [] +synonym: "toe 3 metatarsal cartilage element" EXACT [] xref: EMAPA:18116 -is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015039 ! pedal digit 3 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010560 -name: pedal digit 4 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +name: pedal digit 4 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] +synonym: "foot digit 4 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 4 metatarsal cartilage condensation" EXACT [] +synonym: "toe 4 metatarsal cartilage element" EXACT [] xref: EMAPA:18121 -is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015040 ! pedal digit 4 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010561 -name: pedal digit 5 metatarsal cartilage condensation -def: "A pedal digit metatarsal cartilage condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "hind limb digit 5 metatarsal cartilage condensation" EXACT [OBOL:accepted] -synonym: "toe 5 metatarsal cartilage condensation" EXACT [] +name: pedal digit 5 metatarsal cartilage element +def: "A pedal digit metatarsal cartilage element that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] +synonym: "foot digit 5 metatarsal cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hind limb digit 5 metatarsal cartilage element" EXACT [OBOL:accepted] +synonym: "toe 5 metatarsal cartilage element" EXACT [] xref: EMAPA:18126 -is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage condensation -is_a: UBERON:0010697 ! pedal digit metatarsal cartilage condensation -intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage condensation +is_a: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +is_a: UBERON:0010697 ! pedal digit metatarsal cartilage element +is_a: UBERON:0015041 ! pedal digit 5 metatarsal endochondral element +intersection_of: UBERON:0010697 ! pedal digit metatarsal cartilage element intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -139630,6 +139994,7 @@ xref: EHDAA2:0000515 xref: EMAPA:17714 is_a: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -139646,6 +140011,7 @@ xref: EHDAA2:0000521 xref: EMAPA:17716 is_a: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -139662,6 +140028,7 @@ xref: EHDAA2:0000527 xref: EMAPA:17718 is_a: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -139678,6 +140045,7 @@ xref: EHDAA2:0000533 xref: EMAPA:17720 is_a: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -139694,91 +140062,97 @@ xref: EHDAA2:0000539 xref: EMAPA:17722 is_a: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation is_a: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element intersection_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010570 -name: manual digit 1 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] -synonym: "finger 1 metacarpus cartilage condensation" EXACT [EHDAA2:0000514] -synonym: "fore limb digit 1 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 1 cartilage condensation" EXACT [] +name: manual digit 1 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 1 mesenchyme." [OBOL:automatic] +synonym: "finger 1 metacarpus cartilage element" EXACT [EHDAA2:0000514] +synonym: "fore limb digit 1 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 1 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 1 cartilage element" EXACT [] xref: EHDAA2:0000514 xref: EMAPA:18065 -is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010675 ! manual digit 1 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015043 ! manual digit 1 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010571 -name: manual digit 2 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] -synonym: "finger 2 metacarpus cartilage condensation" EXACT [EHDAA2:0000520] -synonym: "fore limb digit 2 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 2 cartilage condensation" EXACT [] +name: manual digit 2 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 2 mesenchyme." [OBOL:automatic] +synonym: "finger 2 metacarpus cartilage element" EXACT [EHDAA2:0000520] +synonym: "fore limb digit 2 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 2 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 2 cartilage element" EXACT [] xref: EHDAA2:0000520 xref: EMAPA:18070 -is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010676 ! manual digit 2 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015044 ! manual digit 2 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010572 -name: manual digit 3 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] -synonym: "finger 3 metacarpus cartilage condensation" EXACT [EHDAA2:0000526] -synonym: "fore limb digit 3 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 3 cartilage condensation" EXACT [] +name: manual digit 3 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 3 mesenchyme." [OBOL:automatic] +synonym: "finger 3 metacarpus cartilage element" EXACT [EHDAA2:0000526] +synonym: "fore limb digit 3 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 3 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 3 cartilage element" EXACT [] xref: EHDAA2:0000526 xref: EMAPA:18075 -is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010677 ! manual digit 3 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015045 ! manual digit 3 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010573 -name: manual digit 4 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] +name: manual digit 4 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "finger 4 metacarpus cartilage condensation" EXACT [EHDAA2:0000532] -synonym: "fore limb digit 4 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 4 cartilage condensation" EXACT [] +synonym: "fore limb digit 4 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 4 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 4 cartilage element" EXACT [] xref: EHDAA2:0000532 xref: EMAPA:18080 -is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010678 ! manual digit 4 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015046 ! manual digit 4 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010574 -name: manual digit 5 metacarpus cartilage condensation -def: "A manual digit metacarpus cartilage condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] +name: manual digit 5 metacarpus cartilage element +def: "A manual digit metacarpus cartilage element that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "finger 5 metacarpus cartilage condensation" EXACT [EHDAA2:0000538] -synonym: "fore limb digit 5 metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpus 5 cartilage condensation" EXACT [] +synonym: "fore limb digit 5 metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit 5 metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpus 5 cartilage element" EXACT [] xref: EHDAA2:0000538 xref: EMAPA:18085 -is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage condensation -is_a: UBERON:0010699 ! manual digit metacarpus cartilage condensation -intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage condensation +is_a: UBERON:0010679 ! manual digit 5 phalanx cartilage element +is_a: UBERON:0010699 ! manual digit metacarpus cartilage element +is_a: UBERON:0015047 ! manual digit 5 metacarpus endochondral element +intersection_of: UBERON:0010699 ! manual digit metacarpus cartilage element intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -139793,6 +140167,7 @@ xref: EHDAA2:0000516 xref: EMAPA:17715 is_a: UBERON:0010564 ! manual digit 1 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme @@ -139807,6 +140182,7 @@ xref: EHDAA2:0000522 xref: EMAPA:17717 is_a: UBERON:0005692 ! manual digit 2 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme @@ -139821,6 +140197,7 @@ xref: EHDAA2:0000528 xref: EMAPA:17719 is_a: UBERON:0005693 ! manual digit 3 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme @@ -139835,6 +140212,7 @@ xref: EHDAA2:0000534 xref: EMAPA:17721 is_a: UBERON:0005694 ! manual digit 4 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme @@ -139849,6 +140227,7 @@ xref: EHDAA2:0000540 xref: EMAPA:17723 is_a: UBERON:0005695 ! manual digit 5 mesenchyme is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme @@ -139863,6 +140242,7 @@ xref: EHDAA2:0002041 xref: EMAPA:17726 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme @@ -139877,6 +140257,7 @@ xref: EHDAA2:0002046 xref: EMAPA:17728 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme @@ -139891,6 +140272,7 @@ xref: EHDAA2:0002051 xref: EMAPA:17730 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme @@ -139905,6 +140287,7 @@ xref: EHDAA2:0002056 xref: EMAPA:17732 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme @@ -139919,6 +140302,7 @@ xref: EHDAA2:0002061 xref: EMAPA:17734 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme @@ -139936,6 +140320,8 @@ xref: EMAPA:32950 xref: VHOG:0000952 is_a: UBERON:0005255 ! pedal digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: part_of UBERON:0005255 ! pedal digit mesenchyme @@ -139954,6 +140340,8 @@ xref: EMAPA:32639 xref: VHOG:0000954 is_a: UBERON:0005257 ! manual digit mesenchyme is_a: UBERON:0010700 ! phalanx pre-cartilage condensation +is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -139961,13 +140349,14 @@ property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010675 -name: manual digit 1 phalanx cartilage condensation +name: manual digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 1 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18066 is_a: UBERON:0010564 ! manual digit 1 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015025 ! manual digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010564 ! manual digit 1 mesenchyme relationship: develops_from UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation @@ -139975,13 +140364,14 @@ relationship: part_of UBERON:0010564 ! manual digit 1 mesenchyme [Term] id: UBERON:0010676 -name: manual digit 2 phalanx cartilage condensation +name: manual digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 2 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18071 is_a: UBERON:0005692 ! manual digit 2 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015026 ! manual digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005692 ! manual digit 2 mesenchyme relationship: develops_from UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation @@ -139989,13 +140379,14 @@ relationship: part_of UBERON:0005692 ! manual digit 2 mesenchyme [Term] id: UBERON:0010677 -name: manual digit 3 phalanx cartilage condensation +name: manual digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 3 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18076 is_a: UBERON:0005693 ! manual digit 3 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015027 ! manual digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005693 ! manual digit 3 mesenchyme relationship: develops_from UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation @@ -140003,13 +140394,14 @@ relationship: part_of UBERON:0005693 ! manual digit 3 mesenchyme [Term] id: UBERON:0010678 -name: manual digit 4 phalanx cartilage condensation +name: manual digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 4 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18081 is_a: UBERON:0005694 ! manual digit 4 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015028 ! manual digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005694 ! manual digit 4 mesenchyme relationship: develops_from UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation @@ -140017,13 +140409,14 @@ relationship: part_of UBERON:0005694 ! manual digit 4 mesenchyme [Term] id: UBERON:0010679 -name: manual digit 5 phalanx cartilage condensation +name: manual digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit 5 mesenchyme." [OBOL:automatic] synonym: "fore limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "hand digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:18086 is_a: UBERON:0005695 ! manual digit 5 mesenchyme -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0015029 ! manual digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005695 ! manual digit 5 mesenchyme relationship: develops_from UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation @@ -140031,13 +140424,14 @@ relationship: part_of UBERON:0005695 ! manual digit 5 mesenchyme [Term] id: UBERON:0010680 -name: pedal digit 1 phalanx cartilage condensation +name: pedal digit 1 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 1 mesenchyme." [OBOL:automatic] -synonym: "foot digit 1 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 1 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 1 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18107 is_a: UBERON:0010562 ! pedal digit 1 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015031 ! pedal digit 1 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010562 ! pedal digit 1 mesenchyme relationship: develops_from UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation @@ -140045,13 +140439,14 @@ relationship: part_of UBERON:0010562 ! pedal digit 1 mesenchyme [Term] id: UBERON:0010681 -name: pedal digit 2 phalanx cartilage condensation +name: pedal digit 2 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 2 mesenchyme." [OBOL:automatic] -synonym: "foot digit 2 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 2 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 2 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18112 is_a: UBERON:0005696 ! pedal digit 2 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015032 ! pedal digit 2 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005696 ! pedal digit 2 mesenchyme relationship: develops_from UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation @@ -140059,13 +140454,14 @@ relationship: part_of UBERON:0005696 ! pedal digit 2 mesenchyme [Term] id: UBERON:0010682 -name: pedal digit 3 phalanx cartilage condensation +name: pedal digit 3 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 3 mesenchyme." [OBOL:automatic] -synonym: "foot digit 3 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 3 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 3 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18117 is_a: UBERON:0005697 ! pedal digit 3 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015033 ! pedal digit 3 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005697 ! pedal digit 3 mesenchyme relationship: develops_from UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation @@ -140073,13 +140469,14 @@ relationship: part_of UBERON:0005697 ! pedal digit 3 mesenchyme [Term] id: UBERON:0010683 -name: pedal digit 4 phalanx cartilage condensation +name: pedal digit 4 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 4 mesenchyme." [OBOL:automatic] -synonym: "foot digit 4 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 4 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 4 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18122 is_a: UBERON:0005698 ! pedal digit 4 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015034 ! pedal digit 4 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005698 ! pedal digit 4 mesenchyme relationship: develops_from UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation @@ -140087,13 +140484,14 @@ relationship: part_of UBERON:0005698 ! pedal digit 4 mesenchyme [Term] id: UBERON:0010684 -name: pedal digit 5 phalanx cartilage condensation +name: pedal digit 5 phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit 5 mesenchyme." [OBOL:automatic] -synonym: "foot digit 5 phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit 5 phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit 5 phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:18127 is_a: UBERON:0005699 ! pedal digit 5 mesenchyme -is_a: UBERON:0010685 ! pedal digit phalanx cartilage condensation +is_a: UBERON:0010685 ! pedal digit phalanx cartilage element +is_a: UBERON:0015035 ! pedal digit 5 phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005699 ! pedal digit 5 mesenchyme relationship: develops_from UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation @@ -140101,13 +140499,14 @@ relationship: part_of UBERON:0005699 ! pedal digit 5 mesenchyme [Term] id: UBERON:0010685 -name: pedal digit phalanx cartilage condensation +name: pedal digit phalanx cartilage element def: "A cartilaginous condensation that is part of a pedal digit mesenchyme." [OBOL:automatic] -synonym: "foot digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "foot digit phalanx cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32948 is_a: UBERON:0005255 ! pedal digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005255 ! pedal digit mesenchyme relationship: develops_from UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation @@ -140115,13 +140514,14 @@ relationship: part_of UBERON:0005255 ! pedal digit mesenchyme [Term] id: UBERON:0010686 -name: manual digit phalanx cartilage condensation +name: manual digit phalanx cartilage element def: "A cartilaginous condensation that is part of a manual digit mesenchyme." [OBOL:automatic] synonym: "fore limb digit phalanx cartilage condensation" EXACT [OBOL:accepted] synonym: "hand digit phalanx cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] xref: EMAPA:32658 is_a: UBERON:0005257 ! manual digit mesenchyme -is_a: UBERON:0010701 ! phalanx cartilage condensation +is_a: UBERON:0010701 ! phalanx cartilage element +is_a: UBERON:0015024 ! manual digit phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0005257 ! manual digit mesenchyme relationship: develops_from UBERON:0010586 ! manual digit phalanx pre-cartilage condensation @@ -140137,6 +140537,10 @@ synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948] xref: EMAPA:32956 xref: VHOG:0000948 is_a: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005255 ! pedal digit mesenchyme property_value: homologous_in NCBITaxon:7742 @@ -140227,13 +140631,19 @@ relationship: proximally_connected_to UBERON:0010545 ! metatarsus skeleton [Term] id: UBERON:0010697 -name: pedal digit metatarsal cartilage condensation +name: pedal digit metatarsal cartilage element comment: Editor note: EMAPA represents the specific child classes as being part of the digit mesenchyme - we follow this although for the fully formed structure we represent the metatarsals as adjoining rather than being part of the digit skeleton synonym: "foot digit metatarsal cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] synonym: "hind limb digit metatarsal cartilage condensation" EXACT [OBOL:accepted] xref: EMAPA:32951 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0003860 ! hindlimb mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015036 ! pedal digit metatarsal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation [Term] @@ -140247,19 +140657,29 @@ synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953] xref: EMAPA:32850 xref: VHOG:0000953 is_a: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010699 -name: manual digit metacarpus cartilage condensation -synonym: "finger metacarpus cartilage condensation" EXACT [] -synonym: "fore limb digit metacarpus cartilage condensation" EXACT [OBOL:accepted] -synonym: "hand digit metacarpus cartilage condensation" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] -synonym: "metacarpal cartilage condensation" EXACT [] -synonym: "metacarpus cartilage condensation" EXACT [] +name: manual digit metacarpus cartilage element +synonym: "finger metacarpus cartilage element" EXACT [] +synonym: "fore limb digit metacarpus cartilage element" EXACT [OBOL:accepted] +synonym: "hand digit metacarpus cartilage element" NARROW SENSU [NCBITaxon:9606, OBOL:accepted] +synonym: "metacarpal cartilage element" EXACT [] +synonym: "metacarpus cartilage element" EXACT [] xref: EMAPA:32849 -is_a: UBERON:0010686 ! manual digit phalanx cartilage condensation +is_a: UBERON:0010686 ! manual digit phalanx cartilage element +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015042 ! manual digit metacarpus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation relationship: part_of UBERON:0005257 ! manual digit mesenchyme @@ -140268,9 +140688,9 @@ id: UBERON:0010700 name: phalanx pre-cartilage condensation def: "A pre-cartilage condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32720 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: part_of UBERON:0006717 ! autopodial skeleton @@ -140278,12 +140698,12 @@ relationship: part_of UBERON:0010702 ! digit mesenchyme [Term] id: UBERON:0010701 -name: phalanx cartilage condensation +name: phalanx cartilage element def: "A cartilaginous condensation that is part of a digit mesenchyme." [OBOL:automatic] xref: EMAPA:32721 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010702 ! digit mesenchyme +is_a: UBERON:0015023 ! phalanx endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0010702 ! digit mesenchyme relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation @@ -140474,22 +140894,30 @@ property_value: external_definition "Skeletal system that consists of the paired [Term] id: UBERON:0010714 -name: iliac cartilage condensation +name: iliac cartilage element xref: EHDAA2:0000808 xref: EMAPA:18347 xref: VHOG:0001126 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015054 ! iliac endochondral element +intersection_of: UBERON:0015054 ! iliac endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006247 ! iliac pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton property_value: homologous_in NCBITaxon:7742 [Term] id: UBERON:0010718 -name: pubic cartilage condensation +name: pubic cartilage element xref: EHDAA2:0001573 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015055 ! pubic endochondral element +intersection_of: UBERON:0015055 ! pubic endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006285 ! pubic pre-cartilage condensation relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -140549,6 +140977,11 @@ xref: SCTID:182102002 xref: UMLS:C1511560 {source="ncithesaurus:Cuneiform_Bone_of_the_Foot"} xref: Wikipedia:Cuneiform_%28anatomy%29 is_a: UBERON:0001447 ! tarsal bone +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015100 ! distal tarsal cartilage relationship: distally_connected_to UBERON:0001448 ! metatarsal bone relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: external_definition "Series of elements that articulate with the metatarsals.[AAO]" xsd:string @@ -140618,8 +141051,13 @@ relationship: part_of UBERON:0003685 ! cranial suture id: UBERON:0010728 name: sphenoid lesser wing pre-cartilage condensation xref: EHDAA2:0003449 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest +is_a: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -140631,21 +141069,33 @@ xref: EHDAA2:0003448 is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest relationship: part_of UBERON:0009191 ! sphenoid bone pre-cartilage condensation [Term] id: UBERON:0010733 -name: alisphenoid cartilage condensation +name: alisphenoid cartilage element synonym: "alisphenoid cartilage" RELATED [] synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450] xref: EHDAA2:0003450 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0011004 ! pharyngeal arch cartilage +is_a: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: UBERON:0015058 ! alisphenoid endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010732 ! alisphenoid pre-cartilage condensation -relationship: part_of UBERON:0009193 ! sphenoid bone cartilage condensation +relationship: part_of UBERON:0009193 ! sphenoid cartilage element [Term] id: UBERON:0010737 @@ -140658,7 +141108,13 @@ synonym: "tarsal 4" EXACT [AAO:0000932] xref: AAO:0000932 xref: VSAO:0005055 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015112 ! distal tarsal bone 4 cartilage relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string @@ -140673,7 +141129,13 @@ synonym: "tarsal 5" EXACT [AAO:0000933] xref: AAO:0000933 xref: VSAO:0005056 is_a: UBERON:0010721 ! distal tarsal bone +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015115 ! distal tarsal bone 5 cartilage relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5 +relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: proximally_connected_to UBERON:0001451 ! navicular bone of pes property_value: external_definition "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string @@ -140691,6 +141153,12 @@ synonym: "uncinate" RELATED [VSAO:0005047] xref: AAO:0000851 xref: VSAO:0005047 is_a: UBERON:0001481 ! distal carpal bone +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015097 ! distal carpal bone 5 cartilage +relationship: part_of UBERON:0009880 ! carpal skeleton property_value: external_definition "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string [Term] @@ -140758,18 +141226,25 @@ synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:00017 xref: EHDAA2:0001774 xref: EMAPA:17677 is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column [Term] id: UBERON:0010745 -name: sacral vertebra cartilage condensation +name: sacral vertebra cartilage element synonym: "sacral vertebral cartilage condensation" EXACT [] synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773] xref: EHDAA2:0001773 xref: EMAPA:18009 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0005179 ! pelvic region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015010 ! sacral vertebra endochondral element +is_a: UBERON:2001457 ! postcranial axial cartilage +intersection_of: UBERON:0015010 ! sacral vertebra endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010744 ! sacral vertebra pre-cartilage condensation relationship: part_of UBERON:0006075 ! sacral region of vertebral column @@ -140874,9 +141349,15 @@ relationship: part_of UBERON:0004339 ! vault of skull [Term] id: UBERON:0010752 -name: exoccipital cartilage condensation +name: exoccipital cartilage element xref: EMAPA:18339 +is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015051 ! exoccipital endochondral element +intersection_of: UBERON:0015051 ! exoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation relationship: has_potential_to_develop_into UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium @@ -140951,6 +141432,7 @@ id: UBERON:0010757 name: rib 8 comment: elements are to be defined spatially/topologically subset: defined_by_ordinal_series +synonym: "costa VIII" EXACT LATIN [] synonym: "eighth rib" EXACT [FMA:8120] xref: FMA:8120 xref: MA:0001408 @@ -141002,25 +141484,35 @@ id: UBERON:0010801 name: calcaneum pre-cartilage condensation synonym: "calcaneous pre-cartilage condensation" EXACT [] xref: EMAPA:17736 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010842 -name: calcaneum cartilage condensation -synonym: "calcaneous cartilage condensation" EXACT [] +name: calcaneum cartilage element +synonym: "calcaneous cartilage element" EXACT [] xref: EMAPA:18143 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010695 ! mesenchyme of tarsal region +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015014 ! calcaneum endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015014 ! calcaneum endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0010843 -name: clavicle cartilage condensation +name: clavicle cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a clavicle." [OBOL:automatic] comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4] xref: EMAPA:18342 @@ -141050,7 +141542,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a radius b comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation xref: EHDAA2:0001586 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015001 ! radius endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001423 ! radius bone relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation @@ -141065,7 +141559,9 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a ulna." [ xref: EHDAA:6226 xref: EHDAA2:0002100 is_a: UBERON:0003327 ! mesenchyme of forearm +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation +is_a: UBERON:0015003 ! ulna endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001424 ! ulna relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation @@ -141075,28 +141571,32 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010848 -name: radius-ulna cartilage condensation +name: radius-ulna cartilage element comment: AO notes: note that this is not represented as a single unit in EHDAA2 synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711] xref: EMAPA:17711 is_a: UBERON:0003327 ! mesenchyme of forearm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: UBERON:0015002 ! radius-ulna endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation relationship: part_of UBERON:0003327 ! mesenchyme of forearm relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton [Term] id: UBERON:0010849 -name: tibia cartilage condensation +name: tibia cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EMAPA:18155 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015004 ! tibia endochondral element +intersection_of: UBERON:0015004 ! tibia endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: part_of UBERON:0005259 ! lower leg mesenchyme relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton @@ -141106,7 +141606,9 @@ name: tibia pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibia." [OBOL:automatic] xref: EHDAA2:0002036 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015004 ! tibia endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0000979 ! tibia relationship: has_potential_to_develop_into UBERON:0000979 ! tibia @@ -141115,17 +141617,17 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:0010851 -name: fibula cartilage condensation +name: fibula cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a fibula." [OBOL:automatic] synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154] synonym: "fibular cartilage condensation" EXACT [EMAPA:18154] xref: EMAPA:18154 -is_a: UBERON:0005259 ! lower leg mesenchyme -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015013 ! fibula endochondral element +intersection_of: UBERON:0015013 ! fibula endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: part_of UBERON:0001441 ! hindlimb skeleton relationship: part_of UBERON:0005259 ! lower leg mesenchyme @@ -141138,7 +141640,9 @@ synonym: "fibular pre-cartilage condensation" EXACT [] xref: EHDAA:6196 xref: EHDAA2:0000509 is_a: UBERON:0005259 ! lower leg mesenchyme +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015013 ! fibula endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001446 ! fibula relationship: has_potential_to_develop_into UBERON:0001446 ! fibula @@ -141333,9 +141837,11 @@ property_value: present_in_taxon NCBITaxon:9590 [Term] id: UBERON:0010881 -name: limb bone cartilage condensation +name: limb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation @@ -141347,6 +141853,8 @@ id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a limb bone." [OBOL:automatic] is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0009749 ! limb mesenchyme +is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002428 ! limb bone relationship: has_potential_to_develop_into UBERON:0002428 ! limb bone @@ -141354,18 +141862,17 @@ relationship: part_of UBERON:0002091 ! appendicular skeleton [Term] id: UBERON:0010883 -name: forelimb bone cartilage condensation +name: forelimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a forelimb bone." [OBOL:automatic] subset: grouping_class -synonym: "wing bone cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] -is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +synonym: "wing cartilaginous condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015021 ! forelimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002102 ! forelimb relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010884 @@ -141374,37 +141881,36 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a forelimb subset: grouping_class synonym: "wing bone pre-cartilage condensation" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] is_a: UBERON:0003859 ! forelimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015021 ! forelimb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0008962 ! forelimb bone -relationship: has_potential_to_develop_into UBERON:0008962 ! forelimb bone +intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0010885 -name: hindlimb bone cartilage condensation +name: hindlimb cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] -is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010881 ! limb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element +intersection_of: UBERON:0007844 ! cartilage element +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010886 name: hindlimb bone pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a hindlimb bone." [OBOL:automatic] is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010882 ! limb bone pre-cartilage condensation +is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation -intersection_of: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone -relationship: has_potential_to_develop_into UBERON:0003464 ! hindlimb bone +intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0010887 @@ -141578,20 +142084,24 @@ relationship: has_part UBERON:0000992 ! female gonad [Term] id: UBERON:0010900 -name: tarsometatarsus cartilage condensation +name: tarsometatarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015012 ! tarsometatarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage +intersection_of: UBERON:0015012 ! tarsometatarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010901 name: tarsometatarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tarsometatarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015012 ! tarsometatarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus relationship: has_potential_to_develop_into UBERON:0008195 ! tarsometatarsus @@ -141599,20 +142109,23 @@ relationship: part_of UBERON:0001445 ! skeleton of pes [Term] id: UBERON:0010902 -name: tibiotarsus cartilage condensation +name: tibiotarsus cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: UBERON:0015011 ! tibiotarsus endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: part_of UBERON:0001441 ! hindlimb skeleton [Term] id: UBERON:0010903 name: tibiotarsus pre-cartilage condensation def: "A pre-cartilage condensation that has_potential_to_develop_into a tibiotarsus." [OBOL:automatic] +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +is_a: UBERON:0015011 ! tibiotarsus endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus relationship: has_potential_to_develop_into UBERON:0008194 ! tibiotarsus @@ -142418,7 +142931,7 @@ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0011002 -name: articular cartilage condensation +name: articular cartilage element synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 @@ -142862,7 +143375,7 @@ relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0011094 -name: vertebra cartilage condensation +name: vertebra cartilage element def: "A cartilaginous condensation that is part of a vertebral column." [OBOL:automatic] comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584] @@ -142870,6 +143383,7 @@ xref: EMAPA:32669 xref: VHOG:0000584 is_a: UBERON:0005863 ! cartilaginous condensation is_a: UBERON:0010913 ! vertebral element +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation @@ -142884,8 +143398,8 @@ def: "A pre-cartilage condensation that is part of a vertebral column." [OBOL:au synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582] xref: EMAPA:32671 xref: VHOG:0000582 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015005 ! vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: part_of UBERON:0001130 ! vertebral column relationship: develops_from UBERON:0003089 ! sclerotome @@ -143631,18 +144145,19 @@ relationship: connects UBERON:0006428 ! basisphenoid bone [Term] id: UBERON:0011162 -name: supraoccipital cartilage condensation +name: supraoccipital cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a supraoccipital bone." [OBOL:automatic] synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341] synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0005863 ! cartilaginous condensation -intersection_of: UBERON:0005863 ! cartilaginous condensation -intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone +is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: UBERON:0015015 ! supraoccipital endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation -relationship: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: part_of UBERON:0002241 ! chondrocranium [Term] @@ -143652,8 +144167,8 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a supraocc synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963] xref: EHDAA:9534 xref: EHDAA2:0001963 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0015015 ! supraoccipital endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0004747 ! supraoccipital bone relationship: develops_from UBERON:0009617 ! head paraxial mesoderm @@ -144637,10 +145152,11 @@ id: UBERON:0011250 name: autopod bone def: "A bone that is part of a autopod region. Note that this incudes the carpal and tarsal bones." [https://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002428 ! limb bone -intersection_of: UBERON:0001474 ! bone element -intersection_of: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0002470 ! autopod region -relationship: part_of UBERON:0006717 ! autopodial skeleton +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: develops_from UBERON:0015064 ! autopod cartilage property_value: implements_design_pattern http://purl.obolibrary.org/obo/uberon/references/reference_0000015 xsd:anyURI [Term] @@ -146504,7 +147020,7 @@ is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme -relationship: part_of UBERON:0001688 ! incus +relationship: part_of UBERON:0001688 ! incus bone [Term] id: UBERON:0011601 @@ -146590,6 +147106,9 @@ xref: Wikipedia:Hyomandibula xref: ZFA:0000672 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue +relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011607 ! hyomandibular cartilage property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string @@ -146614,6 +147133,9 @@ xref: VHOG:0000688 xref: ZFA:0001422 is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0011608 ! hyomandibular element +intersection_of: UBERON:0011608 ! hyomandibular element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue property_value: external_definition "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO]" xsd:string property_value: homologous_in NCBITaxon:7742 property_value: homology_notes "This structure (the hyomandibular), on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes.[well established][VHOG]" xsd:string @@ -146623,12 +147145,13 @@ id: UBERON:0011608 name: hyomandibular element def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula] synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html] +synonym: "hyomandibula" RELATED [] synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010522 ! replacement element +is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string property_value: axiom_lost_from_external_ontology "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string @@ -147369,6 +147892,8 @@ is_a: UBERON:0014395 ! proximal mesopodial bone intersection_of: UBERON:0001447 ! tarsal bone intersection_of: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton relationship: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton +relationship: develops_from UBERON:0015082 ! proximal tarsal cartilage +relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] id: UBERON:0011683 @@ -148183,6 +148708,8 @@ relationship: part_of UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0011820 name: atrioventricular region +synonym: "atrial ventricular junction" RELATED [GO:0003294] +synonym: "atrioventricular junction" RELATED [GO:0003294] xref: EHDAA2:0004149 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure @@ -150047,11 +150574,13 @@ is_a: UBERON:0006800 ! anatomical line [Term] id: UBERON:0012080 -name: patella cartilage condensation +name: patella cartilage element def: "A cartilaginous condensation that has_potential_to_develop_into a patella." [OBOL:automatic] comment: Note some sources have this as intramembranous xref: EMAPA:19140 -is_a: UBERON:0010885 ! hindlimb bone cartilage condensation +is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0010881 ! limb cartilage element +is_a: UBERON:0015022 ! hindlimb endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella relationship: adjacent_to UBERON:0001485 ! knee joint @@ -150066,6 +150595,7 @@ def: "A pre-cartilage condensation that has_potential_to_develop_into a patella. xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010882 ! limb bone pre-cartilage condensation is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -150282,7 +150812,7 @@ xref: FMA:77271 xref: SCTID:410003009 xref: Wikipedia:Diastema_(dentistry) is_a: UBERON:0000464 ! anatomical space -relationship: adjacent_to UBERON:0001091 {maxCardinality="2", minCardinality="2"} ! calcareous tooth +relationship: adjacent_to UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001708 ! jaw skeleton relationship: part_of UBERON:0003672 ! dentition @@ -150484,8 +151014,11 @@ synonym: "central mesopodium bone" EXACT [] synonym: "centralia" RELATED PLURAL [] synonym: "os centrale" EXACT [FMA:77232] xref: FMA:77232 -is_a: UBERON:0003656 ! mesopodium bone -relationship: part_of UBERON:0009878 ! mesopodial skeleton +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0015067 ! centrale endochondral element +relationship: composed_primarily_of UBERON:0015067 ! centrale endochondral element +relationship: develops_from UBERON:0015077 ! centrale cartilage [Term] id: UBERON:0012132 @@ -150501,7 +151034,7 @@ synonym: "intercuneiform joints" RELATED [Wikipedia:Intercuneiform_articulations xref: FMA:35213 xref: Wikipedia:Intercuneiform_articulations is_a: UBERON:0000982 ! skeletal joint -relationship: connects UBERON:0010721 ! distal tarsal bone +relationship: connects UBERON:0010721 {maxCardinality="2", minCardinality="2"} ! distal tarsal bone [Term] id: UBERON:0012133 @@ -152756,6 +153289,7 @@ id: UBERON:0012429 name: hemopoietic tissue def: "Blood-forming tissue, consisting of reticular fibers and cells. Also known as hemopoietic tissue" [http://encyclopedia2.thefreedictionary.com/hematopoietic+tissue] comment: Bone marrow in humans, kidney interstitium in Danio, within a stroma of reticuloendothelial tissue +synonym: "bone marrow tissue" NARROW [NCBITaxon:9606] synonym: "haemopoietic tissue" EXACT [FMA:14073] synonym: "hematopoietic tissue" EXACT [FMA:14073] synonym: "textus haemopoieticus" EXACT [FMA:14073] @@ -155942,9 +156476,9 @@ relationship: part_of UBERON:0003116 ! pharyngeal arch 5 [Term] id: UBERON:0013503 -name: caudal vertebra cartilage condensation +name: caudal vertebra cartilage element is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra relationship: develops_from UBERON:0013504 ! caudal vertebra pre-cartilage condensation @@ -155954,6 +156488,7 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013504 name: caudal vertebra pre-cartilage condensation +is_a: UBERON:0005174 ! dorsal region organ is_a: UBERON:0011095 ! vertebra pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0001095 ! caudal vertebra @@ -155962,11 +156497,11 @@ relationship: part_of UBERON:0006076 ! caudal region of vertebral column [Term] id: UBERON:0013505 -name: cervical vertebra cartilage condensation +name: cervical vertebra cartilage element synonym: "cervical vertebral cartilage condensation group" EXACT [EHDAA2:0000240] xref: EHDAA2:0000240 -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: develops_from UBERON:0013506 ! cervical vertebra pre-cartilage condensation @@ -155977,6 +156512,7 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column id: UBERON:0013506 name: cervical vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015007 ! cervical vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra relationship: has_potential_to_develop_into UBERON:0002413 ! cervical vertebra @@ -155984,10 +156520,11 @@ relationship: part_of UBERON:0006072 ! cervical region of vertebral column [Term] id: UBERON:0013507 -name: thoracic vertebra cartilage condensation +name: thoracic vertebra cartilage element synonym: "thoracic vertebral cartilage condensation group" EXACT [EHDAA2:0002014] xref: EHDAA2:0002014 -is_a: UBERON:0005863 ! cartilaginous condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: develops_from UBERON:0013508 ! thoracic vertebra pre-cartilage condensation @@ -155997,7 +156534,8 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013508 name: thoracic vertebra pre-cartilage condensation -is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015008 ! thoracic vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra relationship: has_potential_to_develop_into UBERON:0002347 ! thoracic vertebra @@ -156005,12 +156543,11 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk [Term] id: UBERON:0013509 -name: lumbar vertebra cartilage condensation +name: lumbar vertebra cartilage element synonym: "lumbar vertebral cartilage condensation group" EXACT [EHDAA2:0001038] xref: EHDAA2:0001038 -is_a: UBERON:0005173 ! abdominal segment organ -is_a: UBERON:0005174 ! dorsal region organ -is_a: UBERON:0011094 ! vertebra cartilage condensation +is_a: UBERON:0011094 ! vertebra cartilage element +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: develops_from UBERON:0013510 ! lumbar vertebra pre-cartilage condensation @@ -156021,6 +156558,7 @@ relationship: part_of UBERON:0006074 ! lumbar region of vertebral column id: UBERON:0013510 name: lumbar vertebra pre-cartilage condensation is_a: UBERON:0011095 ! vertebra pre-cartilage condensation +is_a: UBERON:0015009 ! lumbar vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra relationship: has_potential_to_develop_into UBERON:0002414 ! lumbar vertebra @@ -156089,10 +156627,11 @@ is_a: UBERON:0013515 ! subdivision of uterine tube [Term] id: UBERON:0013517 -name: coccygeal vertebra cartilage condensation +name: coccygeal vertebra cartilage element synonym: "coccygeal vertebral cartilage condensation group" EXACT [EHDAA2:0000260] xref: EHDAA2:0000260 -is_a: UBERON:0013503 ! caudal vertebra cartilage condensation +is_a: UBERON:0013503 ! caudal vertebra cartilage element +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra relationship: develops_from UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation @@ -156102,6 +156641,7 @@ relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra id: UBERON:0013518 name: coccygeal vertebra pre-cartilage condensation is_a: UBERON:0013504 ! caudal vertebra pre-cartilage condensation +is_a: UBERON:0015006 ! coccygeal vertebra endochondral element intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra relationship: has_potential_to_develop_into UBERON:0006070 ! coccygeal vertebra @@ -157549,7 +158089,7 @@ property_value: external_definition "Anatomical region comprising the peripheral [Term] id: UBERON:0013683 name: left dorsal thalamus -synonym: "left thalamus" EXACT [FMA:258716] +synonym: "left thalamus" BROAD [FMA:258716] xref: FMA:258716 is_a: UBERON:0004703 ! dorsal thalamus intersection_of: UBERON:0004703 ! dorsal thalamus @@ -157559,7 +158099,7 @@ relationship: in_left_side_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0013684 name: right dorsal thalamus -synonym: "right thalamus" EXACT [FMA:258714] +synonym: "right thalamus" BROAD [FMA:258714] xref: FMA:258714 is_a: UBERON:0004703 ! dorsal thalamus intersection_of: UBERON:0004703 ! dorsal thalamus @@ -159011,7 +159551,7 @@ xref: FMA:52770 xref: SCTID:368921009 is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection -relationship: part_of UBERON:0001689 ! malleus +relationship: part_of UBERON:0001689 ! malleus bone [Term] id: UBERON:0014398 @@ -162031,6 +162571,7 @@ property_value: present_in_taxon NCBITaxon:8782 id: UBERON:0014734 name: allocortex def: "The term allocortex refers to one of two types of cerebral cortex defined on the basis of cytoarchitecture and fetal development. The other is neocortex. Allocortex does not pass through a prenatal phase of six-layered structure and has three or four layers in the mature brain ( Schiebler-1999 ). Allocortex has three subtypes: paleocortex, archicortex and periallocortex. This definition differs from that in some older sources, which excluded the olfactory bulb and the accessory olfactory bulb ( Carpenter-1983 )." [NeuroNames:759] +comment: The allocortex is composed of hippocampal and olfactory structures, which usually display three-layered organization[Brainspan] synonym: "allocortex (Stephan)" RELATED [NeuroNames:1598] synonym: "heterogenetic cortex" RELATED [NeuroNames:1598] synonym: "heterogenetic formations" RELATED [NeuroNames:1598] @@ -162062,9 +162603,12 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014736 name: periallocortex -synonym: "periallocortex" RELATED [NeuroNames:2315] +def: "agranular cortical structures located next to the allocortex." [BRAINSPAN:BRAINSPAN] +synonym: "periallocortex" EXACT [NeuroNames:2315] xref: NeuroNames:2315 -is_a: UBERON:0014734 ! allocortex +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: adjacent_to UBERON:0014734 ! allocortex +relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0014738 @@ -163533,6 +164077,1269 @@ name: layer of developing cerebral cortex is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 ! cerebral cortex +[Term] +id: UBERON:0014951 +name: proisocortex +def: "The part of the neocortex hich mainly consists of parts of cingulate, parahippocampal and temporopolar cortice. As distinct from isocortex (typical neocortex) which contains other regions." [BRAINSPAN:BRAINSPAN] +synonym: "intermediate belt" RELATED [NeuroNames:2311] +synonym: "iuxtallocorteccia@it" RELATED [NeuroNames:2311] +synonym: "juxtallocortex" RELATED [NeuroNames:2311] +synonym: "periisocortical belt" RELATED [NeuroNames:2311] +synonym: "proisocortex" RELATED [NeuroNames:2311] +synonym: "proisocortical belt" RELATED [NeuroNames:2311] +xref: NeuroNames:2311 +is_a: UBERON:0002619 ! regional part of cerebral cortex +relationship: part_of UBERON:0001950 ! neocortex + +[Term] +id: UBERON:0015001 +name: radius endochondral element +def: "A radius bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius element" EXACT [UBERON:endochondral] +synonym: "radius skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001423 ! radius bone +union_of: UBERON:0006286 ! radius cartilage element +union_of: UBERON:0010846 ! radius pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015002 +name: radius-ulna endochondral element +def: "A radius-ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "radius-ulna element" EXACT [UBERON:endochondral] +synonym: "radius-ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0006287 ! radius-ulna pre-cartilage condensation +union_of: UBERON:0006715 ! radio-ulna +union_of: UBERON:0010848 ! radius-ulna cartilage element +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015003 +name: ulna endochondral element +def: "A ulna bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ulna element" EXACT [UBERON:endochondral] +synonym: "ulna skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0001424 ! ulna +union_of: UBERON:0006306 ! ulna cartilage element +union_of: UBERON:0010847 ! ulna pre-cartilage condensation +relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015004 +name: tibia endochondral element +def: "A tibia bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibia element" EXACT [UBERON:endochondral] +synonym: "tibia skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000979 ! tibia +union_of: UBERON:0010849 ! tibia cartilage element +union_of: UBERON:0010850 ! tibia pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015005 +name: vertebra endochondral element +def: "A vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "vertebra element" EXACT [UBERON:endochondral] +synonym: "vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002412 ! vertebra +union_of: UBERON:0011094 ! vertebra cartilage element +union_of: UBERON:0011095 ! vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015006 +name: coccygeal vertebra endochondral element +def: "A coccygeal vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "coccygeal vertebra element" EXACT [UBERON:endochondral] +synonym: "coccygeal vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006070 ! coccygeal vertebra +union_of: UBERON:0013517 ! coccygeal vertebra cartilage element +union_of: UBERON:0013518 ! coccygeal vertebra pre-cartilage condensation +relationship: part_of UBERON:0001130 ! vertebral column + +[Term] +id: UBERON:0015007 +name: cervical vertebra endochondral element +def: "A cervical vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "cervical vertebra element" EXACT [UBERON:endochondral] +synonym: "cervical vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002413 ! cervical vertebra +union_of: UBERON:0013505 ! cervical vertebra cartilage element +union_of: UBERON:0013506 ! cervical vertebra pre-cartilage condensation +relationship: part_of UBERON:0000974 ! neck +relationship: part_of UBERON:0006072 ! cervical region of vertebral column + +[Term] +id: UBERON:0015008 +name: thoracic vertebra endochondral element +def: "A thoracic vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "thoracic vertebra element" EXACT [UBERON:endochondral] +synonym: "thoracic vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005181 ! thoracic segment organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002347 ! thoracic vertebra +union_of: UBERON:0013507 ! thoracic vertebra cartilage element +union_of: UBERON:0013508 ! thoracic vertebra pre-cartilage condensation +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: part_of UBERON:0006073 ! thoracic region of vertebral column + +[Term] +id: UBERON:0015009 +name: lumbar vertebra endochondral element +def: "A lumbar vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "lumbar vertebra element" EXACT [UBERON:endochondral] +synonym: "lumbar vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005173 ! abdominal segment organ +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002414 ! lumbar vertebra +union_of: UBERON:0013509 ! lumbar vertebra cartilage element +union_of: UBERON:0013510 ! lumbar vertebra pre-cartilage condensation +relationship: part_of UBERON:0006074 ! lumbar region of vertebral column + +[Term] +id: UBERON:0015010 +name: sacral vertebra endochondral element +def: "A sacral vertebra bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sacral vertebra element" EXACT [UBERON:endochondral] +synonym: "sacral vertebra skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0005174 ! dorsal region organ +is_a: UBERON:0005179 ! pelvic region organ +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001094 ! sacral vertebra +union_of: UBERON:0010744 ! sacral vertebra pre-cartilage condensation +union_of: UBERON:0010745 ! sacral vertebra cartilage element +relationship: part_of UBERON:0006075 ! sacral region of vertebral column + +[Term] +id: UBERON:0015011 +name: tibiotarsus endochondral element +def: "A tibiotarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tibiotarsus element" EXACT [UBERON:endochondral] +synonym: "tibiotarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0008194 ! tibiotarsus +union_of: UBERON:0010902 ! tibiotarsus cartilage element +union_of: UBERON:0010903 ! tibiotarsus pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015012 +name: tarsometatarsus endochondral element +def: "A tarsometatarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsometatarsus element" EXACT [UBERON:endochondral] +synonym: "tarsometatarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0008195 ! tarsometatarsus +union_of: UBERON:0010900 ! tarsometatarsus cartilage element +union_of: UBERON:0010901 ! tarsometatarsus pre-cartilage condensation +relationship: part_of UBERON:0001445 ! skeleton of pes + +[Term] +id: UBERON:0015013 +name: fibula endochondral element +def: "A fibula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "fibula element" EXACT [UBERON:endochondral] +synonym: "fibula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0001446 ! fibula +union_of: UBERON:0010851 ! fibula cartilage element +union_of: UBERON:0010852 ! fibula pre-cartilage condensation +relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton + +[Term] +id: UBERON:0015014 +name: calcaneum endochondral element +def: "A calcaneum bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "calcaneum element" EXACT [UBERON:endochondral] +synonym: "calcaneum skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001450 ! calcaneus +union_of: UBERON:0010801 ! calcaneum pre-cartilage condensation +union_of: UBERON:0010842 ! calcaneum cartilage element + +[Term] +id: UBERON:0015015 +name: supraoccipital endochondral element +def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "supraoccipital element" EXACT [UBERON:endochondral] +synonym: "supraoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004747 ! supraoccipital bone +union_of: UBERON:0011162 ! supraoccipital cartilage element +union_of: UBERON:0011163 ! supraoccipital pre-cartilage condensation +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015016 +name: stapes endochondral element +def: "A stapes bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "stapes element" EXACT [UBERON:endochondral] +synonym: "stapes skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001687 ! stapes bone +union_of: UBERON:0006294 ! stapes pre-cartilage condensation +union_of: UBERON:0010055 ! stapes cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015017 +name: incus endochondral element +def: "A incus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "incus element" EXACT [UBERON:endochondral] +synonym: "incus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001688 ! incus bone +union_of: UBERON:0006248 ! incus pre-cartilage condensation +union_of: UBERON:0007374 ! incus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015018 +name: malleus endochondral element +def: "A malleus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "malleus" RELATED [UBERON:endochondral] +synonym: "malleus element" EXACT [UBERON:endochondral] +synonym: "malleus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001689 ! malleus bone +union_of: UBERON:0006262 ! malleus pre-cartilage condensation +union_of: UBERON:0010054 ! malleus cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015019 +name: rib endochondral element +def: "A rib bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "rib element" EXACT [UBERON:endochondral] +synonym: "rib skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002228 ! rib +union_of: UBERON:0006288 ! rib cartilage element +union_of: UBERON:0006289 ! rib pre-cartilage condensation +relationship: part_of UBERON:0014478 ! rib skeletal system + +[Term] +id: UBERON:0015020 +name: otic capsule endochondral element +def: "A otic capsule bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "otic capsule element" EXACT [UBERON:endochondral] +synonym: "otic capsule skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0004637 ! otic capsule +union_of: UBERON:0010349 ! otic capsule pre-cartilage condensation +union_of: UBERON:0010351 ! otic capsule cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0001846 ! internal ear +relationship: part_of UBERON:0003110 ! otic region + +[Term] +id: UBERON:0015021 +name: forelimb endochondral element +def: "A forelimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "forelimb skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002102 ! forelimb +union_of: UBERON:0008962 ! forelimb bone +union_of: UBERON:0010883 ! forelimb cartilage element +union_of: UBERON:0010884 ! forelimb bone pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0002102 ! forelimb + +[Term] +id: UBERON:0015022 +name: hindlimb endochondral element +def: "A hindlimb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "hindlimb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002103 ! hindlimb +union_of: UBERON:0003464 ! hindlimb bone +union_of: UBERON:0010885 ! hindlimb cartilage element +union_of: UBERON:0010886 ! hindlimb bone pre-cartilage condensation +relationship: part_of UBERON:0001441 ! hindlimb skeleton +relationship: part_of UBERON:0002103 ! hindlimb + +[Term] +id: UBERON:0015023 +name: phalanx endochondral element +def: "A phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "phalanx element" EXACT [UBERON:endochondral] +synonym: "phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015063 ! autopod endochondral element +union_of: UBERON:0003221 ! phalanx +union_of: UBERON:0010700 ! phalanx pre-cartilage condensation +union_of: UBERON:0010701 ! phalanx cartilage element +relationship: part_of UBERON:0010543 ! acropodial skeleton + +[Term] +id: UBERON:0015024 +name: manual digit phalanx endochondral element +def: "A manual digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0002389 ! manual digit +union_of: UBERON:0001436 ! phalanx of manus +union_of: UBERON:0010586 ! manual digit phalanx pre-cartilage condensation +union_of: UBERON:0010686 ! manual digit phalanx cartilage element +relationship: part_of UBERON:0002389 ! manual digit +relationship: part_of UBERON:0010688 ! skeleton of manual acropodium + +[Term] +id: UBERON:0015025 +name: manual digit 1 phalanx endochondral element +def: "A manual digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001463 ! manual digit 1 +union_of: UBERON:0003620 ! manual digit 1 phalanx +union_of: UBERON:0010575 ! manual digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010675 ! manual digit 1 phalanx cartilage element +relationship: part_of UBERON:0001463 ! manual digit 1 + +[Term] +id: UBERON:0015026 +name: manual digit 2 phalanx endochondral element +def: "A manual digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003622 ! manual digit 2 +union_of: UBERON:0003636 ! manual digit 2 phalanx +union_of: UBERON:0010576 ! manual digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010676 ! manual digit 2 phalanx cartilage element +relationship: part_of UBERON:0003622 ! manual digit 2 + +[Term] +id: UBERON:0015027 +name: manual digit 3 phalanx endochondral element +def: "A manual digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003623 ! manual digit 3 +union_of: UBERON:0003637 ! manual digit 3 phalanx +union_of: UBERON:0010577 ! manual digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010677 ! manual digit 3 phalanx cartilage element +relationship: part_of UBERON:0003623 ! manual digit 3 + +[Term] +id: UBERON:0015028 +name: manual digit 4 phalanx endochondral element +def: "A manual digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003624 ! manual digit 4 +union_of: UBERON:0003638 ! manual digit 4 phalanx +union_of: UBERON:0010578 ! manual digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010678 ! manual digit 4 phalanx cartilage element +relationship: part_of UBERON:0003624 ! manual digit 4 + +[Term] +id: UBERON:0015029 +name: manual digit 5 phalanx endochondral element +def: "A manual digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015024 ! manual digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003625 ! manual digit 5 +union_of: UBERON:0003639 ! manual digit 5 phalanx +union_of: UBERON:0010579 ! manual digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010679 ! manual digit 5 phalanx cartilage element +relationship: part_of UBERON:0003625 ! manual digit 5 + +[Term] +id: UBERON:0015030 +name: pedal digit phalanx endochondral element +def: "A pedal digit phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015023 ! phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0001466 ! pedal digit +union_of: UBERON:0001449 ! phalanx of pes +union_of: UBERON:0010585 ! pedal digit phalanx pre-cartilage condensation +union_of: UBERON:0010685 ! pedal digit phalanx cartilage element +relationship: part_of UBERON:0001466 ! pedal digit +relationship: part_of UBERON:0010696 ! skeleton of pedal acropodium + +[Term] +id: UBERON:0015031 +name: pedal digit 1 phalanx endochondral element +def: "A pedal digit 1 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003631 ! pedal digit 1 +union_of: UBERON:0003640 ! pedal digit 1 phalanx +union_of: UBERON:0010580 ! pedal digit 1 phalanx pre-cartilage condensation +union_of: UBERON:0010680 ! pedal digit 1 phalanx cartilage element +relationship: part_of UBERON:0003631 ! pedal digit 1 + +[Term] +id: UBERON:0015032 +name: pedal digit 2 phalanx endochondral element +def: "A pedal digit 2 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003632 ! pedal digit 2 +union_of: UBERON:0003641 ! pedal digit 2 phalanx +union_of: UBERON:0010581 ! pedal digit 2 phalanx pre-cartilage condensation +union_of: UBERON:0010681 ! pedal digit 2 phalanx cartilage element +relationship: part_of UBERON:0003632 ! pedal digit 2 + +[Term] +id: UBERON:0015033 +name: pedal digit 3 phalanx endochondral element +def: "A pedal digit 3 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003633 ! pedal digit 3 +union_of: UBERON:0003642 ! pedal digit 3 phalanx +union_of: UBERON:0010582 ! pedal digit 3 phalanx pre-cartilage condensation +union_of: UBERON:0010682 ! pedal digit 3 phalanx cartilage element +relationship: part_of UBERON:0003633 ! pedal digit 3 + +[Term] +id: UBERON:0015034 +name: pedal digit 4 phalanx endochondral element +def: "A pedal digit 4 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003634 ! pedal digit 4 +union_of: UBERON:0003862 ! pedal digit 4 phalanx +union_of: UBERON:0010583 ! pedal digit 4 phalanx pre-cartilage condensation +union_of: UBERON:0010683 ! pedal digit 4 phalanx cartilage element +relationship: part_of UBERON:0003634 ! pedal digit 4 + +[Term] +id: UBERON:0015035 +name: pedal digit 5 phalanx endochondral element +def: "A pedal digit 5 phalanx bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 phalanx element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 phalanx skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015030 ! pedal digit phalanx endochondral element +intersection_of: UBERON:0015023 ! phalanx endochondral element +intersection_of: part_of UBERON:0003635 ! pedal digit 5 +union_of: UBERON:0003863 ! pedal digit 5 phalanx +union_of: UBERON:0010584 ! pedal digit 5 phalanx pre-cartilage condensation +union_of: UBERON:0010684 ! pedal digit 5 phalanx cartilage element +relationship: part_of UBERON:0003635 ! pedal digit 5 + +[Term] +id: UBERON:0015036 +name: pedal digit metatarsal endochondral element +def: "A pedal digit metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0000983 ! metatarsus region +union_of: UBERON:0010545 ! metatarsus skeleton +union_of: UBERON:0010687 ! pedal digit metatarsal pre-cartilage condensation +union_of: UBERON:0010697 ! pedal digit metatarsal cartilage element +relationship: part_of UBERON:0000983 ! metatarsus region +relationship: part_of UBERON:0012152 ! skeleton of pedal digitopodium + +[Term] +id: UBERON:0015037 +name: pedal digit 1 metatarsal endochondral element +def: "A pedal digit 1 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 1 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003650 ! metatarsal bone of digit 1 +union_of: UBERON:0010547 ! pedal digit 1 metatarsal pre-cartilage condensation +union_of: UBERON:0010557 ! pedal digit 1 metatarsal cartilage element + +[Term] +id: UBERON:0015038 +name: pedal digit 2 metatarsal endochondral element +def: "A pedal digit 2 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 2 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003651 ! metatarsal bone of digit 2 +union_of: UBERON:0010548 ! pedal digit 2 metatarsal pre-cartilage condensation +union_of: UBERON:0010558 ! pedal digit 2 metatarsal cartilage element + +[Term] +id: UBERON:0015039 +name: pedal digit 3 metatarsal endochondral element +def: "A pedal digit 3 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 3 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003652 ! metatarsal bone of digit 3 +union_of: UBERON:0010549 ! pedal digit 3 metatarsal pre-cartilage condensation +union_of: UBERON:0010559 ! pedal digit 3 metatarsal cartilage element + +[Term] +id: UBERON:0015040 +name: pedal digit 4 metatarsal endochondral element +def: "A pedal digit 4 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 4 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003653 ! metatarsal bone of digit 4 +union_of: UBERON:0010550 ! pedal digit 4 metatarsal pre-cartilage condensation +union_of: UBERON:0010560 ! pedal digit 4 metatarsal cartilage element + +[Term] +id: UBERON:0015041 +name: pedal digit 5 metatarsal endochondral element +def: "A pedal digit 5 metatarsal bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal element" EXACT [UBERON:endochondral] +synonym: "pedal digit 5 metatarsal skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element +union_of: UBERON:0003654 ! metatarsal bone of digit 5 +union_of: UBERON:0010551 ! pedal digit 5 metatarsal pre-cartilage condensation +union_of: UBERON:0010561 ! pedal digit 5 metatarsal cartilage element + +[Term] +id: UBERON:0015042 +name: manual digit metacarpus endochondral element +def: "A manual digit metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004453 ! metacarpus region +union_of: UBERON:0010544 ! metacarpus skeleton +union_of: UBERON:0010698 ! manual digit metacarpus pre-cartilage condensation +union_of: UBERON:0010699 ! manual digit metacarpus cartilage element +relationship: part_of UBERON:0004453 ! metacarpus region +relationship: part_of UBERON:0012151 ! skeleton of manual digitopodium + +[Term] +id: UBERON:0015043 +name: manual digit 1 metacarpus endochondral element +def: "A manual digit 1 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 1 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 1 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003645 ! metacarpal bone of digit 1 +union_of: UBERON:0010565 ! manual digit 1 metacarpus pre-cartilage condensation +union_of: UBERON:0010570 ! manual digit 1 metacarpus cartilage element + +[Term] +id: UBERON:0015044 +name: manual digit 2 metacarpus endochondral element +def: "A manual digit 2 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 2 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 2 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003646 ! metacarpal bone of digit 2 +union_of: UBERON:0010566 ! manual digit 2 metacarpus pre-cartilage condensation +union_of: UBERON:0010571 ! manual digit 2 metacarpus cartilage element + +[Term] +id: UBERON:0015045 +name: manual digit 3 metacarpus endochondral element +def: "A manual digit 3 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 3 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 3 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003647 ! metacarpal bone of digit 3 +union_of: UBERON:0010567 ! manual digit 3 metacarpus pre-cartilage condensation +union_of: UBERON:0010572 ! manual digit 3 metacarpus cartilage element + +[Term] +id: UBERON:0015046 +name: manual digit 4 metacarpus endochondral element +def: "A manual digit 4 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 4 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 4 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003648 ! metacarpal bone of digit 4 +union_of: UBERON:0010568 ! manual digit 4 metacarpus pre-cartilage condensation +union_of: UBERON:0010573 ! manual digit 4 metacarpus cartilage element + +[Term] +id: UBERON:0015047 +name: manual digit 5 metacarpus endochondral element +def: "A manual digit 5 metacarpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "manual digit 5 metacarpus element" EXACT [UBERON:endochondral] +synonym: "manual digit 5 metacarpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015042 ! manual digit metacarpus endochondral element +union_of: UBERON:0003649 ! metacarpal bone of digit 5 +union_of: UBERON:0010569 ! manual digit 5 metacarpus pre-cartilage condensation +union_of: UBERON:0010574 ! manual digit 5 metacarpus cartilage element + +[Term] +id: UBERON:0015048 +name: basioccipital endochondral element +def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "basioccipital element" EXACT [UBERON:endochondral] +synonym: "basioccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001692 ! basioccipital bone +union_of: UBERON:0006209 ! basioccipital cartilage element +union_of: UBERON:0009197 ! basioccipital pre-cartilage condensation +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015049 +name: carpus endochondral element +def: "A carpus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "carpus element" EXACT [UBERON:endochondral] +synonym: "carpus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004452 ! carpal region +union_of: UBERON:0001435 ! carpal bone +union_of: UBERON:0006213 ! carpus cartilage element +union_of: UBERON:0006214 ! carpus pre-cartilage condensation +relationship: part_of UBERON:0004452 ! carpal region +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015050 +name: tarsus endochondral element +def: "A tarsus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "tarsus element" EXACT [UBERON:endochondral] +synonym: "tarsus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0004454 ! tarsal region +union_of: UBERON:0001447 ! tarsal bone +union_of: UBERON:0010540 ! tarsus pre-cartilage condensation +union_of: UBERON:0010541 ! tarsus cartilage element +relationship: part_of UBERON:0004454 ! tarsal region +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015051 +name: exoccipital endochondral element +def: "A exoccipital bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "exoccipital element" EXACT [UBERON:endochondral] +synonym: "exoccipital skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001693 ! exoccipital bone +union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation +union_of: UBERON:0010752 ! exoccipital cartilage element +relationship: part_of UBERON:0001703 ! neurocranium +relationship: part_of UBERON:0002241 ! chondrocranium +relationship: part_of UBERON:0005902 ! occipital region + +[Term] +id: UBERON:0015052 +name: femur endochondral element +def: "A femur bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "femur element" EXACT [UBERON:endochondral] +synonym: "femur skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015022 ! hindlimb endochondral element +union_of: UBERON:0000981 ! femur +union_of: UBERON:0006234 ! femur pre-cartilage condensation +union_of: UBERON:0010129 ! femur cartilage element +relationship: part_of UBERON:0000376 ! hindlimb stylopod +relationship: part_of UBERON:0001441 ! hindlimb skeleton + +[Term] +id: UBERON:0015053 +name: humerus endochondral element +def: "A humerus bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "humerus element" EXACT [UBERON:endochondral] +synonym: "humerus skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0015021 ! forelimb endochondral element +union_of: UBERON:0000976 ! humerus +union_of: UBERON:0006245 ! humerus cartilage element +union_of: UBERON:0006246 ! humerus pre-cartilage condensation +relationship: part_of UBERON:0001440 ! forelimb skeleton +relationship: part_of UBERON:0003822 ! forelimb stylopod + +[Term] +id: UBERON:0015054 +name: iliac endochondral element +def: "A iliac bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "iliac element" EXACT [UBERON:endochondral] +synonym: "iliac skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001273 ! ilium +union_of: UBERON:0006247 ! iliac pre-cartilage condensation +union_of: UBERON:0010714 ! iliac cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015055 +name: pubic endochondral element +def: "A pubic bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "pubic element" EXACT [UBERON:endochondral] +synonym: "pubic skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001275 ! pubis +union_of: UBERON:0006285 ! pubic pre-cartilage condensation +union_of: UBERON:0010718 ! pubic cartilage element +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015056 +name: ischial endochondral element +def: "A ischial bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "ischial element" EXACT [UBERON:endochondral] +synonym: "ischial skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001274 ! ischium +union_of: UBERON:0006254 ! ischial cartilage element +union_of: UBERON:0006255 ! ischial pre-cartilage condensation +relationship: part_of UBERON:0007832 ! pelvic girdle skeleton + +[Term] +id: UBERON:0015057 +name: scapula endochondral element +def: "A scapula bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "scapula element" EXACT [UBERON:endochondral] +synonym: "scapula skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006290 ! scapula cartilage element +union_of: UBERON:0006291 ! scapula pre-cartilage condensation +union_of: UBERON:0006849 ! scapula +relationship: part_of UBERON:0007831 ! pectoral girdle skeleton + +[Term] +id: UBERON:0015058 +name: alisphenoid endochondral element +def: "A alisphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "alisphenoid element" EXACT [UBERON:endochondral] +synonym: "alisphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0006721 ! alisphenoid bone +union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation +union_of: UBERON:0010733 ! alisphenoid cartilage element +relationship: part_of UBERON:0008895 ! splanchnocranium + +[Term] +id: UBERON:0015059 +name: orbitosphenoid endochondral element +def: "A orbitosphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "orbitosphenoid element" EXACT [UBERON:endochondral] +synonym: "orbitosphenoid skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0002478 ! orbitosphenoid +union_of: UBERON:0005687 ! orbitosphenoid cartilage element +union_of: UBERON:0010728 ! sphenoid lesser wing pre-cartilage condensation +relationship: part_of UBERON:0002517 ! basicranium +relationship: part_of UBERON:0003111 ! sphenoid region + +[Term] +id: UBERON:0015060 +name: sphenoid endochondral element +def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "sphenoid bone skeletal element" BROAD [UBERON:endochondral] +synonym: "sphenoid element" EXACT [UBERON:endochondral] +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010363 ! endochondral element +union_of: UBERON:0001677 ! sphenoid bone +union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation +union_of: UBERON:0009193 ! sphenoid cartilage element +relationship: part_of UBERON:0011156 ! facial skeleton + +[Term] +id: UBERON:0015061 +name: limb endochondral element +def: "A limb bone or its cartilage or pre-cartilage precursor." [UBERON:endochondral] +synonym: "limb bone endochondral element" EXACT [UBERON:endochondral] +synonym: "limb bone skeletal element" BROAD [UBERON:endochondral] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010363 ! endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002101 ! limb +union_of: UBERON:0002428 ! limb bone +union_of: UBERON:0010881 ! limb cartilage element +union_of: UBERON:0010882 ! limb bone pre-cartilage condensation +relationship: part_of UBERON:0002101 ! limb +relationship: part_of UBERON:0004381 ! skeleton of limb + +[Term] +id: UBERON:0015062 +name: bone condensation +def: "A delimited region of osteoblasts representing the early stages of bone formation." [AEO:0000213, AEO:JB] +xref: AEO:0000213 +is_a: UBERON:0005856 ! developing mesenchymal condensation +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0004288 ! skeleton + +[Term] +id: UBERON:0015063 +name: autopod endochondral element +is_a: UBERON:0015061 ! limb endochondral element +intersection_of: UBERON:0010363 ! endochondral element +intersection_of: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0002470 ! autopod region +relationship: part_of UBERON:0006717 ! autopodial skeleton +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015064 +name: autopod cartilage +is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0015063 ! autopod endochondral element +intersection_of: UBERON:0015063 ! autopod endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +property_value: implements_design_pattern reference:0000015 + +[Term] +id: UBERON:0015067 +name: centrale endochondral element +def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] +comment: Usage notes: This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus. AO notes: the FMA term is under 'general anatomical term'. +synonym: "central mesopodium element" EXACT [UBERON:0012131] +synonym: "centralia" RELATED PLURAL [UBERON:0012131] +is_a: UBERON:0015063 ! autopod endochondral element +relationship: part_of UBERON:0009878 ! mesopodial skeleton + +[Term] +id: UBERON:0015068 +name: distal carpal endochondral element +synonym: "distal carpal" RELATED [AAO:0000847] +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015069 +name: distal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015068 ! distal carpal endochondral element +intersection_of: UBERON:0015068 ! distal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015077 +name: centrale cartilage +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015067 ! centrale endochondral element +intersection_of: UBERON:0015067 ! centrale endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue + +[Term] +id: UBERON:0015078 +name: proximal carpal endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton +relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton + +[Term] +id: UBERON:0015079 +name: proximal carpal cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015080 ! proximal carpal bone pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015080 +name: proximal carpal bone pre-cartilage condensation +is_a: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: UBERON:0015078 ! proximal carpal endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0001442 ! skeleton of manus + +[Term] +id: UBERON:0015081 +name: proximal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015082 +name: proximal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015083 ! proximal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015083 +name: proximal tarsal bone pre-cartilage condensation +is_a: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: UBERON:0015081 ! proximal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015084 +name: distal carpal bone 1 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015085 +name: distal carpal bone 1 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015086 ! distal carpal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015086 +name: distal carpal bone 1 pre-cartilage condensation +is_a: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: UBERON:0015084 ! distal carpal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015087 +name: distal carpal bone 2 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015088 +name: distal carpal bone 2 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015089 ! distal carpal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015089 +name: distal carpal bone 2 pre-cartilage condensation +is_a: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: UBERON:0015087 ! distal carpal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015090 +name: distal carpal bone 3 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015091 +name: distal carpal bone 3 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015092 ! distal carpal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015092 +name: distal carpal bone 3 pre-cartilage condensation +is_a: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: UBERON:0015090 ! distal carpal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015093 +name: distal carpal bone 4 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015094 +name: distal carpal bone 4 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015095 ! distal carpal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015095 +name: distal carpal bone 4 pre-cartilage condensation +is_a: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: UBERON:0015093 ! distal carpal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015096 +name: distal carpal bone 5 endochondral element +is_a: UBERON:0015049 ! carpus endochondral element +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015097 +name: distal carpal bone 5 cartilage +is_a: UBERON:0010883 ! forelimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015098 ! distal carpal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015098 +name: distal carpal bone 5 pre-cartilage condensation +is_a: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: UBERON:0015096 ! distal carpal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009880 ! carpal skeleton + +[Term] +id: UBERON:0015099 +name: distal tarsal bone endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015100 +name: distal tarsal cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015101 ! distal tarsal bone pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015101 +name: distal tarsal bone pre-cartilage condensation +is_a: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: UBERON:0015099 ! distal tarsal bone endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015102 +name: distal tarsal bone 1 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015103 +name: distal tarsal bone 1 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015104 ! distal tarsal bone 1 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015104 +name: distal tarsal bone 1 pre-cartilage condensation +is_a: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: UBERON:0015102 ! distal tarsal bone 1 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015105 +name: distal tarsal bone 2 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015106 +name: distal tarsal bone 2 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015107 ! distal tarsal bone 2 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015107 +name: distal tarsal bone 2 pre-cartilage condensation +is_a: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: UBERON:0015105 ! distal tarsal bone 2 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015108 +name: distal tarsal bone 3 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015109 +name: distal tarsal bone 3 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015110 ! distal tarsal bone 3 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015110 +name: distal tarsal bone 3 pre-cartilage condensation +is_a: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: UBERON:0015108 ! distal tarsal bone 3 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015111 +name: distal tarsal bone 4 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015112 +name: distal tarsal bone 4 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015113 ! distal tarsal bone 4 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015113 +name: distal tarsal bone 4 pre-cartilage condensation +is_a: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: UBERON:0015111 ! distal tarsal bone 4 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015114 +name: distal tarsal bone 5 endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015115 +name: distal tarsal bone 5 cartilage +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015064 ! autopod cartilage +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +relationship: develops_from UBERON:0015116 ! distal tarsal bone 5 pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015116 +name: distal tarsal bone 5 pre-cartilage condensation +is_a: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: UBERON:0015114 ! distal tarsal bone 5 endochondral element +intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation +relationship: part_of UBERON:0009879 ! tarsal skeleton + +[Term] +id: UBERON:0015117 +name: lamina terminalis of cerebral hemisphere +def: "The remnant of the lamina terminalis in the developed brain." [UBERON:cjm] +comment: In the developed brain, the lamina terminalis remains as the thin rostral wall of the third ventricle, stretching from the bases of the major cerebral commissures (the anterior commissure, the commissure of the fornix, and the rostrum of the corpus callosum) to the dorsal surface of the optic chiasm[MGI:anna] +synonym: "lamina terminalis" BROAD [FMA:61975] +xref: EHDAA:3500 +xref: EHDAA:4498 +xref: FMA:61975 +xref: SCTID:361483008 +xref: VHOG:0001547 +xref: Wikipedia:Lamina_terminalis +is_a: UBERON:0014532 ! lamina of cerebral hemisphere +relationship: part_of UBERON:0002437 ! cerebral hemisphere white matter +relationship: transformation_of UBERON:0005078 ! lamina terminalis of neural tube + [Term] id: UBERON:1000000 name: chin ventral margin @@ -163830,7 +165637,7 @@ namespace: none def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle. [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]" [] is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element -relationship: develops_from UBERON:0006254 ! ischial cartilage condensation +relationship: develops_from UBERON:0006254 ! ischial cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -165551,6 +167358,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -165611,6 +167419,7 @@ namespace: uberon/phenoscape-anatomy def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -175986,6 +177795,7 @@ comment: The supraoccipital crest may be small and restricted to the dorsal part synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -179136,6 +180946,7 @@ name: spina occipitalis namespace: uberon/phenoscape-anatomy def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string @@ -188829,8 +190640,7 @@ id: UBERON:3000921 name: element Y of hind mesopodium namespace: uberon/phenoscape-anatomy def: "Oval tarsal element that is located on the anteromedial side of the tibiale. Anteriorly, it articulates with the proximal prehallux, tarsals 1, 2, and 3." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -189460,8 +191270,8 @@ id: UBERON:3010045 name: centrale 1 namespace: uberon/phenoscape-anatomy def: "Distal-most centrale when two are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -189497,8 +191307,8 @@ id: UBERON:3010060 name: centrale (fore) namespace: uberon/phenoscape-anatomy def: "Rectangular cartilage or bone between the distal basal commune and the proximal intermedium." [AAO:EJS] -is_a: UBERON:0001435 ! carpal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0009880 ! carpal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -189584,8 +191394,8 @@ id: UBERON:3010073 name: centrale 2 namespace: uberon/phenoscape-anatomy def: "The proximal-most rectangular cartilage or bone when two centralelia are present." [AAO:EJS] -is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -190356,8 +192166,9 @@ name: postminimus namespace: uberon/phenoscape-anatomy def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0007844 ! cartilage element +is_a: UBERON:0010885 ! hindlimb cartilage element +is_a: UBERON:0015050 ! tarsus endochondral element +is_a: UBERON:0015064 ! autopod cartilage relationship: part_of UBERON:0009879 ! tarsal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string created_by: amphibian_anatomy_curators @@ -195590,8 +197401,7 @@ id: UBERON:4200140 name: prepollical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prepollex which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the hand." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015049 ! carpus endochondral element relationship: part_of UBERON:0012135 ! prepollex skeleton [Term] @@ -195599,8 +197409,7 @@ id: UBERON:4200141 name: prehallical element namespace: none def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010363 ! endochondral element +is_a: UBERON:0015050 ! tarsus endochondral element relationship: part_of UBERON:3000922 ! prehallux skeleton created_by: DB @@ -196251,6 +198060,24 @@ is_a: UBERON:0006984 ! anatomical surface relationship: part_of UBERON:0004765 ! skeletal element created_by: WD +[Term] +id: UBERON:4300081 +name: mesopterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300082 +name: metapterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + +[Term] +id: UBERON:4300083 +name: propterygium element +is_a: UBERON:2101587 ! pectoral fin proximal radial element +created_by: WD + [Term] id: UBERON:4400000 name: metapterygium @@ -196988,6 +198815,11 @@ xref: BSPO:0000125 is_a: part_of ! part_of inverse_of: in_proximal_side_of ! in_proximal_side_of +[Typedef] +id: in_dorsal_side_of +name: in_dorsal_side_of +is_a: part_of ! part_of + [Typedef] id: in_lateral_side_of name: in_lateral_side_of @@ -197050,6 +198882,11 @@ holds_over_chain: part_of in_taxon holds_over_chain: supplies in_taxon holds_over_chain: overlaps in_taxon +[Typedef] +id: in_ventral_side_of +name: in_ventral_side_of +is_a: part_of ! part_of + [Typedef] id: innervated name: innervated (UNDECLARED) diff --git a/util/add-cart-cond.pl b/util/add-cart-cond.pl index 7f77646653..d21f0da17f 100755 --- a/util/add-cart-cond.pl +++ b/util/add-cart-cond.pl @@ -37,23 +37,30 @@ exit 1; sub mk() { - my $cc = sprintf("UBERON:%07d", $max); - my $pc = sprintf("UBERON:%07d", $max+1); + my $ec = sprintf("UBERON:%07d", $max); + my $cc = sprintf("UBERON:%07d", $max+1); + my $pc = sprintf("UBERON:%07d", $max+2); print "relationship: develops_from $cc ! $n cartilaginous condensation\n"; print "\n"; print "[Term]\n"; + printf "id: $ec\n"; + print "name: $n endochondral element\n"; + print "is_a: UBERON:0010363 ! endochondral element\n"; + print "relationship: part_of $p\n"; + print "\n"; + print "[Term]\n"; printf "id: $cc\n"; - print "name: $n cartilaginous condensation\n"; - print "intersection_of: UBERON:0005863 ! cartilaginous condensation\n"; - print "intersection_of: develops_into $id ! $n\n"; + print "name: $n cartilage\n"; + print "intersection_of: $ec ! $n endochondral element\n"; + print "intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue\n"; print "relationship: part_of $p\n"; print "relationship: develops_from $pc ! $n pre-cartilage condensation\n"; print "\n"; print "[Term]\n"; printf "id: $pc\n"; print "name: $n pre-cartilage condensation\n"; - print "intersection_of: UBERON:0005866 ! pre-cartilage condensation\n"; - print "intersection_of: develops_into $id ! $n\n"; + print "intersection_of: $ec ! $n endochondral element\n"; + print "intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation\n"; print "relationship: part_of $p\n"; print "\n";